Prediction of potential genes in microbial genomes Time: Fri May 27 08:52:29 2011 Seq name: gi|228309182|gb|ACLR01000001.1| Porphyromonas uenonis 60-3 ctg1118640599660, whole genome shotgun sequence Length of sequence - 28954 bp Number of predicted genes - 33, with homology - 31 Number of transcription units - 15, operones - 9 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 725 1039 ## COG3590 Predicted metalloendopeptidase 2 1 Op 2 . - CDS 747 - 1652 1161 ## PG0160 hypothetical protein 3 1 Op 3 . - CDS 1729 - 2208 579 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis 4 1 Op 4 . - CDS 2227 - 2949 976 ## COG3340 Peptidase E - Prom 2985 - 3044 1.9 5 2 Tu 1 . - CDS 3067 - 3465 216 ## - Prom 3560 - 3619 2.5 + Prom 3281 - 3340 3.8 6 3 Tu 1 . + CDS 3398 - 3787 366 ## gi|228469300|ref|ZP_04054326.1| hypothetical protein PORUE0001_0573 + Term 4037 - 4074 0.6 + Prom 4005 - 4064 3.2 7 4 Op 1 . + CDS 4085 - 6217 2397 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 8 4 Op 2 . + CDS 6229 - 6738 621 ## BF0319 hypothetical protein + Term 6911 - 6958 13.5 - Term 8360 - 8399 8.2 9 5 Tu 1 . - CDS 8449 - 9912 2197 ## COG2195 Di- and tripeptidases + Prom 9886 - 9945 5.8 10 6 Op 1 . + CDS 10075 - 10290 324 ## gi|228469315|ref|ZP_04054341.1| hypothetical protein PORUE0001_0578 11 6 Op 2 . + CDS 10330 - 10956 942 ## PG0535 hypothetical protein 12 6 Op 3 . + CDS 11011 - 11736 847 ## COG0289 Dihydrodipicolinate reductase 13 6 Op 4 . + CDS 11764 - 13182 1825 ## COG0681 Signal peptidase I 14 6 Op 5 . + CDS 13166 - 13651 316 ## gi|228469298|ref|ZP_04054324.1| signal peptidase-related protein 15 6 Op 6 . + CDS 13645 - 14298 592 ## BF0144 hypothetical protein 16 7 Op 1 . - CDS 14295 - 14642 436 ## Coch_2162 hypothetical protein - Prom 14662 - 14721 1.6 17 7 Op 2 . - CDS 14724 - 14984 195 ## - Prom 15220 - 15279 3.1 18 8 Op 1 . + CDS 15244 - 15891 853 ## COG0259 Pyridoxamine-phosphate oxidase 19 8 Op 2 . + CDS 15897 - 16577 612 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 20 8 Op 3 29/0.000 + CDS 16598 - 17482 1163 ## COG2086 Electron transfer flavoprotein, beta subunit 21 8 Op 4 3/0.000 + CDS 17523 - 18536 1241 ## COG2025 Electron transfer flavoprotein, alpha subunit 22 8 Op 5 . + CDS 18558 - 20288 2123 ## COG1960 Acyl-CoA dehydrogenases 23 9 Op 1 . + CDS 20526 - 21323 1160 ## COG0207 Thymidylate synthase + Term 21361 - 21419 5.4 24 9 Op 2 . + CDS 21468 - 21614 241 ## PROTEIN SUPPORTED gi|228469287|ref|ZP_04054313.1| ribosomal protein L34 + Term 21685 - 21739 10.5 - Term 21635 - 21684 3.8 25 10 Op 1 9/0.000 - CDS 21830 - 22435 549 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 26 10 Op 2 . - CDS 22432 - 23400 653 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Prom 23437 - 23496 2.6 27 11 Tu 1 . + CDS 23468 - 24043 710 ## COG0512 Anthranilate/para-aminobenzoate synthases component II + Term 24170 - 24215 0.3 - Term 24061 - 24121 2.2 28 12 Tu 1 . - CDS 24337 - 24588 210 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 - Prom 24783 - 24842 3.9 + Prom 24661 - 24720 2.8 29 13 Op 1 16/0.000 + CDS 24857 - 26809 2617 ## COG0441 Threonyl-tRNA synthetase 30 13 Op 2 . + CDS 26912 - 27541 858 ## COG0290 Translation initiation factor 3 (IF-3) 31 14 Op 1 . + CDS 27701 - 27895 332 ## PROTEIN SUPPORTED gi|228469285|ref|ZP_04054311.1| ribosomal protein L35 32 14 Op 2 . + CDS 27955 - 28302 594 ## PROTEIN SUPPORTED gi|228469292|ref|ZP_04054318.1| ribosomal protein L20 + Term 28419 - 28457 4.3 + Prom 28403 - 28462 1.6 33 15 Tu 1 . + CDS 28484 - 28952 642 ## COG0015 Adenylosuccinate lyase Predicted protein(s) >gi|228309182|gb|ACLR01000001.1| GENE 1 2 - 725 1039 241 aa, chain - ## HITS:1 COG:XF0576 KEGG:ns NR:ns ## COG: XF0576 COG3590 # Protein_GI_number: 15837178 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Xylella fastidiosa 9a5c # 23 241 13 249 700 100 27.0 2e-21 MNHFEIEQSNMNNRKLLVAALCAASITFSACNKKQGAQTNDEIVPAINLADMDTLVRPQD DFYHYVNGGWIKANPLKPAYSRFGTFDVLRDRSIEQIHGIVDELAQGSYKAGSNEYRVSV LYKQAIDSVKRNELGAQPILDELKSIEAINSKEALVDFAAQQDNKGDDTFFGTYVMADAE NSDMNIFNLNQTSLALGNKEYYTDPKNGEIIKSYNQYIERIAQLAGYSAEEAQRIAKNNI A >gi|228309182|gb|ACLR01000001.1| GENE 2 747 - 1652 1161 301 aa, chain - ## HITS:1 COG:no KEGG:PG0160 NR:ns ## KEGG: PG0160 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 301 1 300 300 352 55.0 8e-96 MKPTLVIMAAGMGSRYGGLKQLDKLGPAGESIMDYSVFDAIRAGFGKVVFVIRHAFAEQF KEQVLQKYQKAIDTAVVYQEIDSLPEGFTAPAERTKPWGTNHALMMAAPEIDGPFAVINA DDFYGREAFQTMSDYLSQLPSDSRGAYCMVAYDIESTLTAEGSVSRGVCKASPEGYLMHI TEHKNIHENESHEIVSMHDGKKLSIARGTLVSMNLWGFTPDYLEHSERLFADFLKEHGSE PTSEFFIPTVVDTLIRQGLAQVQVLSTDARWFGATYASDRDMVIAHLAKLTEAGEYPSPL L >gi|228309182|gb|ACLR01000001.1| GENE 3 1729 - 2208 579 159 aa, chain - ## HITS:1 COG:BB0377 KEGG:ns NR:ns ## COG: BB0377 COG1854 # Protein_GI_number: 15594722 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Borrelia burgdorferi # 1 158 17 173 173 174 48.0 6e-44 MKDIPSFTIDHERLKRGVYVSRRDLVGDQVVTTFDIRMKAPNREPVLDLSALHTIEHLVA TYLRNDPEWGSRIIYWGPMGCLTGNYLIIVGDLNPLDIADLLRRAFAFVAHYEGAVPGVA PRDCGNYKLHNLELAREESRRYLEEVLEHLDDTNTHYPE >gi|228309182|gb|ACLR01000001.1| GENE 4 2227 - 2949 976 240 aa, chain - ## HITS:1 COG:STM4190 KEGG:ns NR:ns ## COG: STM4190 COG3340 # Protein_GI_number: 16767440 # Func_class: E Amino acid transport and metabolism # Function: Peptidase E # Organism: Salmonella typhimurium LT2 # 3 217 2 214 229 192 46.0 4e-49 MKKLLLISNSASQGQPYLGYAAEEIGRFLGPVAQDVLFVPYAAITYSWDEYVAKVNNALG GVGVNVTGLHTYDKPLQALASAQAIMVGGGNTWALLKQLQDMGAMKLIRERVLEDGIPYV GWSAGSNLACPTIMTTNDMPICNPDTTQALGLISFQINPHYLDAHPEGHGGETREQRIRE FVKYNPNCDVLGLREGSMLHITGDKITLWGERTARLFNYPTFYDNPLEIEPGVLSYSEKK >gi|228309182|gb|ACLR01000001.1| GENE 5 3067 - 3465 216 132 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYTSPNSKAVIRVGISICVSLFICCIAGKDSEKFSPRNRRLFKFNVAKWNLRSQDDRRNT RKTNSSEEILRLLGGKSLFLPKFEIKVRKNEMKLRKKDFKVRKNFFVPPWRIFVSSVAIG DFLRYTPRRSEE >gi|228309182|gb|ACLR01000001.1| GENE 6 3398 - 3787 366 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469300|ref|ZP_04054326.1| ## NR: gi|228469300|ref|ZP_04054326.1| hypothetical protein PORUE0001_0573 [Porphyromonas uenonis 60-3] # 1 129 7 135 135 259 100.0 3e-68 MKRLTHIDMPTRMTALLLGLVYILALMGQAMHQHDAEIFSSTYYGLISDANVDQSDDNKK SEASSEVYLVNKVTCPVCEFHLGITDQCAVAPSFAVDEWDTPAPELQPEAVHLALREGIA LRAPPVRYC >gi|228309182|gb|ACLR01000001.1| GENE 7 4085 - 6217 2397 710 aa, chain + ## HITS:1 COG:XF0384 KEGG:ns NR:ns ## COG: XF0384 COG1629 # Protein_GI_number: 15836986 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Xylella fastidiosa 9a5c # 26 710 54 681 681 107 23.0 6e-23 MVALAESSLSKPDSIALKPHPFDETLQTVVVRANSQRLQTARLGQTIEWLDSTYLTKHFT GNFAATLSTLPGVNVITIGSGYGKPVIRGLGFNRIAYVDGGLKQEGQQWGADHGLEVDAF DQDPVQVIKGAGSLLYGSDALGGVIVRQPATPPHKQGLYGSCTLLGQSSTMGGGGSLMMG YLHGAHHIRLRVSGQYHGDRNVTADSITYLTRWIPIYGRRLKNSATQTYASQLRYEWLGE QIKASLQASVNGERSGFFPGAHGVPDLKRVLPDKSRYNIELPYSTVRQLSTQGSLQWRIS PQWQLVGELGWQQNLRRELSAFHTHYGTMQRPVQDADLEFEFDLKTISARLQASYYAPWG GKWTLGTDGQYQWHKRRGYGFLLPDYQRATSGMSLTYQGRIAQGLHLTSGLRYDLGYISM SPYHDPYLADYLKERGESSATLTQYYYSSQEGERHWHDLSGSVGLAWQINRHWLWKVNLG RSFRLPGIYELAANGIHHGTFRHEVGDPSLSSEQGWLLDSEVGFHNEVWSCTVAPFVTYF TNYIFLQPSGEWSILPHSGQIYRYQSTRALFTGVELEGTWHLHPQWDYHLQGDYVYTYNV ADRLALPYSPPARLSHDLTWHPQHWALSLKHRIIAPQHRIARNEEPTPGTASLLDLAVTY DGQLRQSNYRISLAIQNLLDSRYYDHMSYYRRVNLPEAGRNVLLTINLSF >gi|228309182|gb|ACLR01000001.1| GENE 8 6229 - 6738 621 169 aa, chain + ## HITS:1 COG:no KEGG:BF0319 NR:ns ## KEGG: BF0319 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 10 151 7 149 167 154 55.0 8e-37 MMKRTIFASITLLSCLALATAFTACKKEPTDTTKPVIDLIAPEDHSMYLTGDDNGVHFEM NLSDNDLVKSYKIDVHNNFDGHSHTRDLRLGDDKTKPFSFNKEYTVNQRNAHIHHHDIKI PADATPGEYHLLVYCVDRSGNESMVARTIILVQDTSGDHHDHDHDHDHK >gi|228309182|gb|ACLR01000001.1| GENE 9 8449 - 9912 2197 487 aa, chain - ## HITS:1 COG:VC2279 KEGG:ns NR:ns ## COG: VC2279 COG2195 # Protein_GI_number: 15642277 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Vibrio cholerae # 2 484 51 531 534 438 45.0 1e-122 MQITDLTHMPIWQHFYEITKIPRPSKHEEQILAFLKKFAEEHNLDYAQDKTGNIVIRKGA TPGMEDRETIILQGHVDMVCEKNSDVEHDFYKDPIKTQITDGWIHAEGTTLGADNGIGVA AGLAVLTDPTVEHGPVECLFTVDEETGLTGAMGIEPGFVQGRILINLDSEDEGEMFIGCA GGMGTMAFFDYTTEATPAGQIALEVKVSGLKGGHSGGDIHVGLGNANKLLVRYLYKVLKE VPEMRLAMIDGGNLHNAIAREAKAIITIPANRKENLAIWANEMDAEFRNELKKVDPNVNL RVETTTTPKEVVDAKTANTLIRTLYACPHGVMGMSHSLEGLVETSTNLASVKMREGNVIS IETSQRSSTESLKEDVGNMLLALFELAGARTEVRDGYPGWAPNPDSEILKVAESTYRELF GKEPKVKAIHAGLECGLFLAKYPYLDMVSFGPTMRDVHSPAERMEVQTVEMFWRHLVAIL KNAPKRK >gi|228309182|gb|ACLR01000001.1| GENE 10 10075 - 10290 324 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469315|ref|ZP_04054341.1| ## NR: gi|228469315|ref|ZP_04054341.1| hypothetical protein PORUE0001_0578 [Porphyromonas uenonis 60-3] # 1 71 13 83 83 90 100.0 3e-17 MKLIIISVLLVGLAVLLLALRLIVKGDKNPQSSHIEDSKALKKRGIGCANKQMAELATRQ NLADRIADDPQ >gi|228309182|gb|ACLR01000001.1| GENE 11 10330 - 10956 942 208 aa, chain + ## HITS:1 COG:no KEGG:PG0535 NR:ns ## KEGG: PG0535 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 29 199 24 198 206 89 34.0 1e-16 MNKKFILLLPLLIASLLLGSCNQKQNGQPTTSDSLTATTADPTHQLKIGVVSLDSLYKNY EYYTQANKQIEAQLKRNQQALANKAQKAQQAYASYMEKAQKGLFTTQAQVDAEEKRITAM QQEGAQLEQRYAEEAMKAQADAQKALHDEVVAQLKAFNADKKYDLILTSTGLEGVMYAGE GFDITKEVLDFLNAAHKAKANDTKKPKK >gi|228309182|gb|ACLR01000001.1| GENE 12 11011 - 11736 847 241 aa, chain + ## HITS:1 COG:MK1422 KEGG:ns NR:ns ## COG: MK1422 COG0289 # Protein_GI_number: 20094858 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Methanopyrus kandleri AV19 # 44 239 69 267 275 119 38.0 5e-27 MKIAILGYGRMGHMIEEVATQRGHQVVARIDKADAALLEDGSLREADVAIEFSTPESGYQ LCQAALKAGLPVVTGSTGWNEQLEKLKAEVQSSGRGGLFAASNFSLGMNLMMILNEQLAQ LMAPYPEYTPRIQETHHIHKLDAPSGTAITLAEGLIEQTPSLHNWHLGLETHDGSLGIEA IREGEVPGIHTVIYHSDIDEITLRHEAYSRRGFALGATLAAEYLQQHPVGVWSMRDLILH K >gi|228309182|gb|ACLR01000001.1| GENE 13 11764 - 13182 1825 472 aa, chain + ## HITS:1 COG:STM2582 KEGG:ns NR:ns ## COG: STM2582 COG0681 # Protein_GI_number: 16765902 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Salmonella typhimurium LT2 # 399 463 256 320 324 77 50.0 5e-14 MKMKLHWQDKSIFQKVVAIVIPILYLLFCILWAGPFWLIFLPFILDYYFTKFINWSWYRN IKNKTLRGFVSLLADLLWAVIGVHLLSIFFVQNFAIPTSSLEKTLLVGDYLFVDKVTYGP RMPMTPLQVPLTQNRFLGHESYLSKPQLSYMRLKGIRKVERGDLVVFNFPTGDTVTTKVT NPDYYYLKEMYGGRAALEAQPEVFGKIVYRPVDRRDHYVKRCVGLPGDLIEIRNNDIYIN GKQQARPEYMQLNYWVCTRGGYFSAEELKHLGISLDDQHVVSPSQLSAGDLEAMGLTGVS MSDVQALYLLPLTEEMRQQLASDSRVAKIVVSQDPNTNLYPVGYDFGWTRDNYGPLQIPR KGLTIELTPQALALYSRCIHNYEGHALEQRPDGTILIDGQPATHYTFGMDYYYMMGDNRH NSADSRYWGFVPEDHIVGRPAFLWLSLDKDLGLWNGKIRWRRMMHTIHGQPL >gi|228309182|gb|ACLR01000001.1| GENE 14 13166 - 13651 316 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469298|ref|ZP_04054324.1| ## NR: gi|228469298|ref|ZP_04054324.1| signal peptidase-related protein [Porphyromonas uenonis 60-3] # 1 161 1 161 161 307 100.0 1e-82 MVSHSDIATRRRATWLRWGLPTIIVVLIIVGRLFFFVYRQTTPSGSSYHLMSRIAQPHRG DDVLLKLTADSLAESELILRVVGEPSDTLRFTEGKLLVLGKRGRQTFTMPLPQPLQQSSY EVVLAADEYWLLAKPPLTAKTIDSRHFGPIHRSEISATVIW >gi|228309182|gb|ACLR01000001.1| GENE 15 13645 - 14298 592 217 aa, chain + ## HITS:1 COG:no KEGG:BF0144 NR:ns ## KEGG: BF0144 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 4 206 6 208 214 160 41.0 2e-38 MVVLPTAYAPSVAYMSYLLDSSTRIEAHEYYQKQTYRNRCAIVGAEGVMKLSIPVLAGSS QQCPVQSVQIAEHDNWRHKHWYTIETCYGASPYYEYYAPDLAPLYLDKERRSTSLYQHNQ RLIMRICQLIHLPYQWQETEQYVGTSAGVCSQILPPITTDSTATQETIASVPYYQVFARS LGFVANLSILDLLFNMGPESLLVLRQLHDQLSGNSLR >gi|228309182|gb|ACLR01000001.1| GENE 16 14295 - 14642 436 115 aa, chain - ## HITS:1 COG:no KEGG:Coch_2162 NR:ns ## KEGG: Coch_2162 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 29 86 29 86 115 73 56.0 2e-12 MEVNTPPPYENRNEKQQDKPVTNVYVQNVVQSPQKNSLGTAGFVLSLVALLVGWVPVLGW IVWILGAIFSGIGIFRKPRGLSIAGVCISFFWLIIFALIFGVFMTAVVADSYANL >gi|228309182|gb|ACLR01000001.1| GENE 17 14724 - 14984 195 86 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSPSTALSRKSDDSSVDIFESPVRNEQILPNFEIFLPNFHFILPNFYFPSPWRIFVCSLK IPNLLGINLGYSGLFQALGGRPCRNA >gi|228309182|gb|ACLR01000001.1| GENE 18 15244 - 15891 853 215 aa, chain + ## HITS:1 COG:PA1049 KEGG:ns NR:ns ## COG: PA1049 COG0259 # Protein_GI_number: 15596246 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxamine-phosphate oxidase # Organism: Pseudomonas aeruginosa # 7 215 7 215 215 191 49.0 7e-49 MDLHYEDIRRDYGRRSLSRKDLTDDPFSLVRLWLQEAVDDPKVLEPTAVLVCTSTPDGHP SSRTVLLKELLGEEFIFYSNYESRKGQQMAANPHVSLTFLWHELERQIHVEGTVRHLEPE ISDQYFATRPYKSRIGARISPQSHPIPDRNYIYTHFVTEAAKFALQTVPRPDNWGGFAVL PSRIEFWQGRPSRLHDRFLYERQEDNSWLINRLAP >gi|228309182|gb|ACLR01000001.1| GENE 19 15897 - 16577 612 226 aa, chain + ## HITS:1 COG:CC0059 KEGG:ns NR:ns ## COG: CC0059 COG1214 # Protein_GI_number: 16124314 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Caulobacter vibrioides # 7 132 1 122 211 70 41.0 2e-12 MNATKPVLLAIDTALQGCSVAVTDSEQVLYTKVYQETEISNAVLIGRYTEEAINWCQEHG YQIAAIATTDGPGSYTGLRIGASLAKGLAFGRSIPLIAVSTLQLLLAGLPSFAGETVTLL DAGHGNAYQQTFDAQGGPCDKATFVTISSEWHAPTESRIVYVGSLPVEGTAVAPPTAETL ATVARSYWLEERYVDTAYWEPNYVKPYKAVVGQNKVLERLKLSKQA >gi|228309182|gb|ACLR01000001.1| GENE 20 16598 - 17482 1163 294 aa, chain + ## HITS:1 COG:CAC2710 KEGG:ns NR:ns ## COG: CAC2710 COG2086 # Protein_GI_number: 15895967 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Clostridium acetobutylicum # 4 258 2 224 259 164 41.0 2e-40 MIKDIIVLAKQVPDTRNVGKDAMKADGTVNRAALDAIFNPEDLNALEQALRIKEQNPDCR VSILTMGPPRAAEIIREALYRGADHGYLLTDRAFAGADTLATSYALACAIRHIYKGGLPD LILGGRQAIDGDTAQVGPQVGEKLGINVVTYCEQIDQIEGDQLTITRRLEHGVETVRAHK PLLLTVTGSAAPCRLRNAKRVQKYKYAASALELDALPETWRKRLESNPEELTIDILTAES TGADIAQCGLSGSPTKVKSIESVVFKAKEVMHLSSSDADLETLIQTLLANHTIG >gi|228309182|gb|ACLR01000001.1| GENE 21 17523 - 18536 1241 337 aa, chain + ## HITS:1 COG:CAC2709 KEGG:ns NR:ns ## COG: CAC2709 COG2025 # Protein_GI_number: 15895966 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Clostridium acetobutylicum # 4 333 9 332 336 275 45.0 1e-73 MNNLFVYLEIEDGSVHDVSLELLTKGRSLANQLGVALEAIAITDRAEGIADTVMPYGVDK LHLFVDPRLEHYQTLPHASIVIKLFQQEKPQICLLGATTIGRDLGPRVSSSLGSGLTADC TSLEIGDHTEKGKEFKNLLYQIRPAFGGNIVATIVNPEHRPQMATVRPGVMKKEIYKADH KGEVINHSVADFVRDEDFVIEIIDRHVAKSKINLGGAPIIVSGGYGVGSAESFELLHELA NLLGGEVGATRAAVDAGFTEHERQIGQTGVTVRPKLYIACGISGQIQHVAGMQESSMIIS INTDPDAPINTIADYVITGRIEEVIPKLIKYYKQNSK >gi|228309182|gb|ACLR01000001.1| GENE 22 18558 - 20288 2123 576 aa, chain + ## HITS:1 COG:CC3393 KEGG:ns NR:ns ## COG: CC3393 COG1960 # Protein_GI_number: 16127623 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Caulobacter vibrioides # 45 445 48 459 603 187 34.0 6e-47 MANFYTDNPHIQYHLQHPLMERIARLKERDYADADQYDYAPSDYADALDSYQRVLEIVGE VCGEVIAPNAAEVDLTGPTLHEGRVSYDPLTAQNLDTVRQTGLMGMALPRRYGGLNMPIT PYIMAADMVSRADAGFENLWGLQDCAETLYEFGSEDQRERFLPRVCAGETMSMDLTEPDA GSDLQAVMLKATYNEADQQWYLNGVKRFITNGDSDIHLVLARSEEGTKDARGLSMFIYDA KKGGVTVRRIEHKMGIKGVPTCELVFKDAPAELCGERRLGLIRYVMSLMNGARLGIMAQA VGISEAAYREAKAYAADRHQYGHAIDKFPAVYEMLALIRAKADATRAHLYETSRFVDMYK AYDDIARERKLTPEERKEQKYYSRLADAYTPIGKGMSTELANQNVYDCIQIYGGSGYMKD YTCERLYRDVRITNIYEGTTQLQVVAAIRHVTTGTYFARLEEYQQVAVSPEWQETKELLA TWIERAKACTELVTEAKDQTLLDYHARRLVEMCGHCIFAHLLLIAAQERPDLYEHSTHVY IQYASGEMDKCEGLIRRFDPKQLQHYAVQTSTPAEA >gi|228309182|gb|ACLR01000001.1| GENE 23 20526 - 21323 1160 265 aa, chain + ## HITS:1 COG:BH3451 KEGG:ns NR:ns ## COG: BH3451 COG0207 # Protein_GI_number: 15616013 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Bacillus halodurans # 1 265 1 264 264 379 64.0 1e-105 MQQYLDLIERVLTEGNERTDRTGTGTVGVFGHQMTFDLADGFPLLTTKKLHLRSIIHELL WFLKGDTNLQYLHDNKVSIWDEWADEAGDLGPIYGAQWRHWFDPHTGQTIDQMQQALDLI RHQPDSRRIVVSAWNVADLPLMHLSPCHCLMQYYVVGDKLDLQLYQRSADIFLGVPFNIA SYALLLMMTAQVTGLRPGRFIHTLGDAHLYKNHLEQARLQLTRTPRPLPTMTLRDRGQSL FDFVYDDFTLTDYNPYPHIPAPVSV >gi|228309182|gb|ACLR01000001.1| GENE 24 21468 - 21614 241 48 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228469287|ref|ZP_04054313.1| ribosomal protein L34 [Porphyromonas uenonis 60-3] # 1 48 1 48 48 97 100 9e-20 MKRTFQPSNRKRKNKHGFRARMATASGRKVLAMRRAKGRAKLSVSDEY >gi|228309182|gb|ACLR01000001.1| GENE 25 21830 - 22435 549 201 aa, chain - ## HITS:1 COG:PM1465 KEGG:ns NR:ns ## COG: PM1465 COG0115 # Protein_GI_number: 15603330 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Pasteurella multocida # 7 190 5 192 193 134 38.0 1e-31 MSQVPLLLESIRYVDGEPELLPLHQERVDRSLAEYGVKPRWRLADYLAQHPCPASLMGVV KCRLLYDAEPLEVGYAPYHRRTIQSLRAVAAPELDYHLKWADRAALQALLEQRGDADEVV IVNEEGLLTDSSYTNIALRQGNRWYTPRVPLLAGVQRAHLIAEGVLTPRDIPLAELSAYD RIALINAMMPWAERIELEVRG >gi|228309182|gb|ACLR01000001.1| GENE 26 22432 - 23400 653 322 aa, chain - ## HITS:1 COG:HI1170 KEGG:ns NR:ns ## COG: HI1170 COG0147 # Protein_GI_number: 16273094 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Haemophilus influenzae # 3 320 7 323 328 308 49.0 1e-83 MKQSMIDRLNELGGQGKPFVFCLDYEMSELILLEKPLAQQELLFDIGGVTNCLARSVSDT SAVLCATPISEEAYAERFAVIRHALERGDSFLANLTVATPIELNISLEEVFLRSQARYKC YLPGRFVCFSPETFVRIVGNEISCYPMKGTIDATLPDAAETILGDYKETAEHYTITDLIR NDLSRVSHDVAVRRFRYIDELVTSRGRLLQVSSEIVGQLSPNWRAHLGSILSELLPAGSI SGAPKEATVRAIAVAEGEPRGFYTGICGYFDGETLDSGVMIRFIEQQADGALRYRSGGGI TINSHCAEEYREVCQKVYLPFV >gi|228309182|gb|ACLR01000001.1| GENE 27 23468 - 24043 710 191 aa, chain + ## HITS:1 COG:HI1171 KEGG:ns NR:ns ## COG: HI1171 COG0512 # Protein_GI_number: 16273095 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Haemophilus influenzae # 4 189 3 186 193 153 40.0 2e-37 MKHLLIADNHDSFVYNLVELLRQLDECTLEIHYTEQITPAMVARSHGLLLSPGPGIPTEQ SHLMELIDSYHTELPMLGVCLGHQALAAYCGAELMQLRTPLHGHTDQLIIEHHDELLRDI PTGSHIGRYHSWVVQPDNLPDTLQVTAHAQSDGTIMALRHRALPLWGVQFHPESYISDHG RRYLHNFIAQL >gi|228309182|gb|ACLR01000001.1| GENE 28 24337 - 24588 210 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 6 80 17 91 91 94 68.0 2e-18 MIWISPEEIGNLQGANEYSPRRREMKLRKNEMKLRKKQIKVPKNLFVPPWRIRNTYRGNF DFLGGVVSRFSECVEVHRTSNPS >gi|228309182|gb|ACLR01000001.1| GENE 29 24857 - 26809 2617 650 aa, chain + ## HITS:1 COG:DR2081 KEGG:ns NR:ns ## COG: DR2081 COG0441 # Protein_GI_number: 15807075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Deinococcus radiodurans # 5 624 1 625 649 656 53.0 0 MSDQIHITLPDGSVKEMKQGSTPLDIANSISERLAQEVLAAECDGKLIDVRTPLMQDAHI KLLKWEDEGGKHAFWHTSAHLMAEALQELYPGVQFGIGPAIEAGFYYDIDTGDQVIKSED LPKIEAKMLELARRKETLERKAISKSDALDFFKKTGQTYKLELINDLEDGTITTYTQGAF TDLCRGPHLPSTAPIKAVKLLSVAGAYWRGDETRRQLTRIYGITFPKKKLLDEYLALLEE AKKRDHRKIGKELELFAFSQRVGQGLPLWLPRGTQLRLKLEDFLKRIQKRYGYQQVMTPH IGNVELYKTSGHYAKYGADSFQVITTPQEGEAFMLKPMNCPHHCEIYKLKPHSYRDLPVR LAEFGTVYRYEQSGELHGLTRVRGFTQDDAHIFCRPDQVKEEFLKVMEIIFIIFRALDFE NFEAQISLRSQTDRSKYIGSEENWDRAEQAIIEACQEAGLPAHVEYDEAAFYGPKLDFMV KDALGRRWQLGTIQVDYNLPERFELEYTGEDNQKHRPVMIHRAPFGSMERFVAVLIEHTA GKFPLWLSPDQVVILPVSERFNDYAYEVAAALSEQDISVSVDDRNEKVGRKIRDNELKRI PYMLIVGEQEQADGTVSVRKQGEGDAGTEKISTFAERILKEIESQMNANA >gi|228309182|gb|ACLR01000001.1| GENE 30 26912 - 27541 858 209 aa, chain + ## HITS:1 COG:BH3140 KEGG:ns NR:ns ## COG: BH3140 COG0290 # Protein_GI_number: 15615702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 3 (IF-3) # Organism: Bacillus halodurans # 1 179 8 187 190 143 45.0 2e-34 MANSRNFRRPPIKEQPNRINEQIPHREVRLVGDNVDQGVYPIQQARRIAELQGLDLVEIS PNAEPPVCRVTDYQKFLYQQKKRQKEQKAKQAKVVVKEIRFGPQTDDHDYNFKLRHAEGF LKDGFKVKAYVFFRGRSILFKDQGEILLLRFANDLEELARVESMPVLEGKRMTIMLAPKP ASAKGKKKEPKQTSEESTDQEASEEKDNE >gi|228309182|gb|ACLR01000001.1| GENE 31 27701 - 27895 332 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228469285|ref|ZP_04054311.1| ribosomal protein L35 [Porphyromonas uenonis 60-3] # 1 64 1 64 64 132 100 3e-30 MPKQKTVSGAKKRFFLTGSGRVKRKHAYKSHILTKKSKKRKRNLTYTALVHPHNEHSVKE MLNL >gi|228309182|gb|ACLR01000001.1| GENE 32 27955 - 28302 594 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228469292|ref|ZP_04054318.1| ribosomal protein L20 [Porphyromonas uenonis 60-3] # 1 115 1 115 115 233 100 1e-60 MPRSVNHVASRAKRKRILKLTRGYIGARRNVWTVAKNGWEKGLTYAYRDRKNKKRSFRAL WIQRINAAARLEGMSYSTLMGALHKQGIEINRKVLADLAMNNPEAFKSICEKARG >gi|228309182|gb|ACLR01000001.1| GENE 33 28484 - 28952 642 156 aa, chain + ## HITS:1 COG:RSc2720 KEGG:ns NR:ns ## COG: RSc2720 COG0015 # Protein_GI_number: 17547439 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Ralstonia solanacearum # 1 155 4 159 457 125 44.0 3e-29 MSALQAISPLDGRYASKTAPLAAYSSESALIRYRVRIEVEYLIALTQAIPALSKAITEPK QQALRQLYKEWSTEAAQEVKDIEATTNHDVKAVEYYIKRHLPQLGLEEIEEYVHFGLTSQ DVNNTAFPLMLREALHEVYLPTLQQLIEQLRQLANE Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:24 2011 Seq name: gi|228309178|gb|ACLR01000002.1| Porphyromonas uenonis 60-3 deg1118640599573, whole genome shotgun sequence Length of sequence - 586 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 269 413 ## COG0450 Peroxiredoxin - Prom 355 - 414 4.6 Predicted protein(s) >gi|228309178|gb|ACLR01000002.1| GENE 1 2 - 269 413 89 aa, chain - ## HITS:1 COG:STM0608 KEGG:ns NR:ns ## COG: STM0608 COG0450 # Protein_GI_number: 16763985 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 8 89 3 83 187 113 60.0 9e-26 MQMTMQPIINSNLPEFKVPAYTKSKGFHEVSNEDLKGRWSVLFFYPGDFTFVCPTELADL ADNYAEFQQIGVDIYSVSTDSHFVHKAWQ Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:25 2011 Seq name: gi|228309175|gb|ACLR01000003.1| Porphyromonas uenonis 60-3 deg1118640599518, whole genome shotgun sequence Length of sequence - 502 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 4 - 501 418 ## COG0297 Glycogen synthase Predicted protein(s) >gi|228309175|gb|ACLR01000003.1| GENE 1 4 - 501 418 165 aa, chain - ## HITS:1 COG:TM0895 KEGG:ns NR:ns ## COG: TM0895 COG0297 # Protein_GI_number: 15643657 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Thermotoga maritima # 6 68 106 168 486 60 41.0 1e-09 PPSEGAPSDNADRSIFFIRGVLEAIKSLHWIPDVIHCLGWFSALAPVYLKTAYKNDPYFE RAKVLFSVDGNEEEGRDWAKDLIKKLEFDKITGDLLDPLQGEVTPDALRRMAIHYSDGVI LGQESVSPELIEYLRSEPDHKVLEYPGPAVDHAEAYVDFYRSFTE Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:25 2011 Seq name: gi|228309171|gb|ACLR01000004.1| Porphyromonas uenonis 60-3 deg1118640599482, whole genome shotgun sequence Length of sequence - 506 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 197 185 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 242 - 285 12.2 2 2 Tu 1 . - CDS 185 - 490 128 ## Predicted protein(s) >gi|228309171|gb|ACLR01000004.1| GENE 1 3 - 197 185 64 aa, chain + ## HITS:1 COG:SA0511 KEGG:ns NR:ns ## COG: SA0511 COG0451 # Protein_GI_number: 15926231 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 61 254 314 321 73 45.0 8e-14 AVKRIIPDFEMSYDVDPLRQAIAESWPNSLDDSCARREWDWQPHYDLDTMSQDMIQVLRA RYGK >gi|228309171|gb|ACLR01000004.1| GENE 2 185 - 490 128 101 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVLGAFTKAFVSTRKVAMRT HLRSLPRESQMKSATPERTQEWRMWMRLCQSLGICADAYLP Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:31 2011 Seq name: gi|228309168|gb|ACLR01000005.1| Porphyromonas uenonis 60-3 deg1118640599556, whole genome shotgun sequence Length of sequence - 546 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:31 2011 Seq name: gi|228309165|gb|ACLR01000006.1| Porphyromonas uenonis 60-3 deg1118640599704, whole genome shotgun sequence Length of sequence - 586 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 583 549 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228309165|gb|ACLR01000006.1| GENE 1 2 - 583 549 193 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 1 127 88 209 227 81 39.0 8e-16 SRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTDYEAS LGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALYNTARPHR ALNKKTPMQMLIPDYPNPLTTQPPKNQISKNDSPTAPSLKTPSPCRLTPNKELSLCTSAV KTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:32 2011 Seq name: gi|228309161|gb|ACLR01000007.1| Porphyromonas uenonis 60-3 deg1118640599536, whole genome shotgun sequence Length of sequence - 526 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 71 - 265 201 ## gi|228469671|ref|ZP_04054642.1| transposase family protein Predicted protein(s) >gi|228309161|gb|ACLR01000007.1| GENE 1 71 - 265 201 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469671|ref|ZP_04054642.1| ## NR: gi|228469671|ref|ZP_04054642.1| transposase family protein [Porphyromonas uenonis 60-3] # 1 64 48 111 111 113 100.0 3e-24 MSKTNKNKAVDPDYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKRPICS RETA Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:37 2011 Seq name: gi|228309159|gb|ACLR01000008.1| Porphyromonas uenonis 60-3 deg1118640599697, whole genome shotgun sequence Length of sequence - 517 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 516 501 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228309159|gb|ACLR01000008.1| GENE 1 3 - 516 501 171 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 30 171 65 201 227 93 39.0 2e-19 TTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSLTMDAYSRIITGFD LQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTDYEASLGIVTSVT QTGNPLHNAMAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTARPH Prediction of potential genes in microbial genomes Time: Fri May 27 08:53:47 2011 Seq name: gi|228309129|gb|ACLR01000009.1| Porphyromonas uenonis 60-3 ctg1118640599609, whole genome shotgun sequence Length of sequence - 36605 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 11, operones - 7 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 592 584 ## COG3590 Predicted metalloendopeptidase 2 1 Op 2 . + CDS 589 - 1011 466 ## COG3590 Predicted metalloendopeptidase + Term 1102 - 1159 18.0 3 2 Tu 1 . + CDS 1163 - 2215 942 ## BDI_2094 hypothetical protein 4 3 Tu 1 . - CDS 2377 - 2583 282 ## - Prom 2726 - 2785 78.1 + TRNA 2709 - 2783 75.0 # Val GAC 0 0 5 4 Op 1 . + CDS 3024 - 5774 3112 ## BT_3560 hypothetical protein 6 4 Op 2 . + CDS 5789 - 6616 984 ## FIC_02376 hypothetical protein 7 4 Op 3 . + CDS 6672 - 8315 2353 ## gi|228469348|ref|ZP_04054366.1| conserved hypothetical protein + Term 8396 - 8438 1.3 8 5 Tu 1 . + CDS 8451 - 9812 1132 ## COG1864 DNA/RNA endonuclease G, NUC1 + Term 9846 - 9889 5.0 9 6 Tu 1 . - CDS 9826 - 10023 135 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 - Prom 10103 - 10162 2.5 + Prom 9827 - 9886 1.9 10 7 Op 1 41/0.000 + CDS 10131 - 10400 499 ## COG0234 Co-chaperonin GroES (HSP10) 11 7 Op 2 . + CDS 10452 - 12086 1648 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 12167 - 12230 21.1 - Term 12155 - 12218 22.7 12 8 Op 1 . - CDS 12256 - 12666 436 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase 13 8 Op 2 . - CDS 12688 - 13635 1261 ## COG3176 Putative hemolysin 14 8 Op 3 . - CDS 13632 - 14516 790 ## COG3176 Putative hemolysin - Prom 14741 - 14800 3.7 + Prom 14724 - 14783 3.2 15 9 Op 1 33/0.000 + CDS 14947 - 16107 1166 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 16 9 Op 2 35/0.000 + CDS 16116 - 17150 1189 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 17 9 Op 3 . + CDS 17155 - 17952 212 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 18 9 Op 4 . + CDS 17949 - 19742 1743 ## COG1903 Cobalamin biosynthesis protein CbiD 19 9 Op 5 . + CDS 19753 - 21054 1658 ## COG1797 Cobyrinic acid a,c-diamide synthase + Prom 21091 - 21150 3.8 20 10 Op 1 . + CDS 21246 - 22814 1632 ## COG1864 DNA/RNA endonuclease G, NUC1 21 10 Op 2 . + CDS 22832 - 23737 836 ## gi|228469352|ref|ZP_04054370.1| hypothetical protein PORUE0001_0300 22 10 Op 3 . + CDS 23773 - 25209 1984 ## gi|228469351|ref|ZP_04054369.1| hypothetical protein PORUE0001_0301 23 10 Op 4 . + CDS 25295 - 25675 271 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 + Term 25745 - 25782 1.6 24 11 Op 1 . + CDS 26019 - 28022 2367 ## COG3408 Glycogen debranching enzyme 25 11 Op 2 . + CDS 28075 - 28932 226 ## gi|228469333|ref|ZP_04054351.1| hypothetical protein PORUE0001_0303 26 11 Op 3 2/0.000 + CDS 28998 - 30242 1422 ## COG0438 Glycosyltransferase 27 11 Op 4 . + CDS 30267 - 31523 1292 ## COG1449 Alpha-amylase/alpha-mannosidase 28 11 Op 5 . + CDS 31555 - 33666 2320 ## COG0339 Zn-dependent oligopeptidases 29 11 Op 6 . + CDS 33679 - 36093 1703 ## PG0569 hypothetical protein + Term 36149 - 36200 11.1 Predicted protein(s) >gi|228309129|gb|ACLR01000009.1| GENE 1 2 - 592 584 196 aa, chain + ## HITS:1 COG:XF0576 KEGG:ns NR:ns ## COG: XF0576 COG3590 # Protein_GI_number: 15837178 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Xylella fastidiosa 9a5c # 1 167 344 509 700 177 49.0 8e-45 SDDFVQANFDFYSKTLSGIKEMHPRWRRAVNLLNGTLGEALGEVYVKKYFPEEAKERMKT MISNLQSALKDRISQLEWMSDETKQKAIEKLSNFTVKIGYPDKWKDYSKLNISEDKSFVD NVRSAIQFEHDFNMSELGQPVDRSRWLMNPQDVNAYYMPTTNEICFPLVSYSLHSLTSML MTLSTMVLSVWSSVMR >gi|228309129|gb|ACLR01000009.1| GENE 2 589 - 1011 466 140 aa, chain + ## HITS:1 COG:XF0576 KEGG:ns NR:ns ## COG: XF0576 COG3590 # Protein_GI_number: 15837178 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Xylella fastidiosa 9a5c # 1 122 539 660 700 119 48.0 1e-27 MTHGFDDQGSEFDATGNMNNWWTKADKQNFKTSTERLAQQFSKIKINDNLNADGHLTLGE NIADQGGLLVSYLALQKQLNGKKVDKIDGFTPAQRFFIGYARVWGQNITPEEEIRLTKID PQQLGYQPCQPGAEEHRCLL >gi|228309129|gb|ACLR01000009.1| GENE 3 1163 - 2215 942 350 aa, chain + ## HITS:1 COG:no KEGG:BDI_2094 NR:ns ## KEGG: BDI_2094 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 14 349 5 341 348 204 37.0 4e-51 MICSVVVRLRWLRLLFLLLCGTLHLVAQQRFTFVSYNVENLFDTIPSTRWDDREYLPTAR KGWTAPRMKRKCRQLAEVISHVTAWDIPALIALQEVESVEALEQLGQHTLLSSANYKTIC ATGSDRRGSHVALLYDADRFALERIEEWPLRITPDSVYPTRNLLFVSGRLPSAARLSLIV CHLPSRRGGATAEKARATLIKMLRMRTDSLLMADPAQSIIVLGDFNATPEDALTDSWALS YQAYQSQVDSLEMVDLTPPFTSEQLETMPPGSYYYRGSWERIDRLFVSRSLLAESHYPHI ELETVRIALPPQQYMHETPAPWGRPRRTYGGDTYLGGPSDHLPLVGTLLY >gi|228309129|gb|ACLR01000009.1| GENE 4 2377 - 2583 282 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSSTALSRKSPISSVEIANYPRRNRKILRNFDFFLPKFHFILPNFYFPVPWRIFICSLK VPDFLGRN >gi|228309129|gb|ACLR01000009.1| GENE 5 3024 - 5774 3112 916 aa, chain + ## HITS:1 COG:no KEGG:BT_3560 NR:ns ## KEGG: BT_3560 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 111 916 31 846 846 494 35.0 1e-138 MRRIVQIICLALIALYGAQAQQIDKARGSVYEEQTGTPIPAVNVTWTGDGITSQVQTDAS GAYTISYSGTGRLTVIFNKSGYRAEVLELEWPREANRLERVSLTPTLTAADMADLSMTDF VMSDDGVTAGDISPLLTASRDPYTNKAGFQFSPMRFRVRGYDSYYQSQYLNGMQMNNMNN GYSSYSLWNGLNNVTRVQNNEDGLQPIDYSFGNIGGTMNILTRASGYRPGTTLTFSGSNR TYNYRTMATHATGMMPEGWAITASASRRWGNQSYVQGQFYDAWGYFLSLEKQFTPQHSLG LVILAAPTERGVASGTTQEVYDLVGSNFFNPNVGFQGGKLRNARVRSNHEPIIQLQHYWQ INEKNKLTTGVGYRFGKNAYSALNWGNGPDPRPDYYRNLPSYYGYMSETQDPDMAAYYEE LWHSDCNMRYINWDRLYNINRNNYQVLFDEKGRQIAEGNRSIYVVEDRRSDQRQFNFATT WNALINKHLRFDLGANYRLNRTANFNVIADLLGGDYWLDIDKYSERDFAQDPSKSQVDLD HPNRVVGVGDKYGHNYLAHIQEAELWGNLWGQSRHVDGYLAFTAGWTGMHREGLQRRGLF PDNSFGDSKHLNFLNYGVKGGITYKITGRHYLVANASWTQRAPYFADIFVSPRTRNQYVT DPRPERVLSGDLSYVLRSPFVKGRITGFYTHFYDKTKNMSFYDDGYRAFSNYVLTNIEST HMGVEAGMEFKITPALTAIAVVSYGQYRYANNPDYVQTVDNSQKLLEQDRVYWKGFHVSG TPQTAANLSVSYQFPFYMWAGLDLNYFGRSFISLNPIRRTDKARASLDYDYVRQEVFPGG FTLDANVGYSWRIKSGVYLRLNLSTSNLLNTKNLRSGGYEQLRVRYTKEGKMMRPFDSRY FYMYGTTFFFNAALQF >gi|228309129|gb|ACLR01000009.1| GENE 6 5789 - 6616 984 275 aa, chain + ## HITS:1 COG:no KEGG:FIC_02376 NR:ns ## KEGG: FIC_02376 # Name: not_defined # Def: hypothetical protein # Organism: F.bacterium # Pathway: not_defined # 46 274 303 525 685 105 30.0 2e-21 MNSMTHIYNRLIVVVGMLALLTSCQYNKIDPPQERTPRPLWERTMTIQELKALYQSKPVR VVPDAVIVGQVISDDSEGNIYKSVYLQDETGGIEFKAGLVNSNLLYKRGSKIAIRCHGLT LGKYGGVVTLGKHSTEPKYENAYLPEQMTPSLVRCDNSRQPLVYRTLTIPTLSPEYTNTL IRLEGVQFVDSELGQTYADADNKTSVPAVERQIEDQQGNRVVLRSSSYALFAGRQIPQGS GNITAILGYFNGKPQLLISLESDINFTSPRFQTTK >gi|228309129|gb|ACLR01000009.1| GENE 7 6672 - 8315 2353 547 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469348|ref|ZP_04054366.1| ## NR: gi|228469348|ref|ZP_04054366.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 547 1 547 547 1011 100.0 0 MKTLNKLATRRLLLAILTIAPLLAVTSCKDEMDYYEKPYVTLSPNFTDNTIPFKQDGGKQ ELTIETNRRFSITFGEGAEWVSATPMEATEGTHQIAITALPNRSEDAREAQMIIKTSTTQ HVYLIMQLGSTGKGITYTSLAEIAKLGEGLDQNGKTIDQDLRIRATVTTHAETKQLPFAG YHHIQDAEGNALVLIVPKGKGEGALQFGDEVTAKLKGAKISNYKGTIQLQVSHAQMSIVP NKPIEPIETTLAEIVAGKHPNQYVRVKDVQFVKPDVPFFDSASAPSTRHKLVDKSGNEAE LDVWKTATFGEEKVPSGSGSITAVVTVYKSNKTNKTFFNLRPTLRSDIKLDQPRFDVGGG NQPNPNPNPNPQGNVYGVDLSQTACTIPFADDFSKGGEDKKDFTLPGWLNKALVGTTLKF QNGSYGGVHFALASAFKSTEPENKFVLVTPRLQMKAGSSYTVDLTYSTGHTNGATLTIQQ LDKDGKLVKTLEVINDQSSPNGFGNQHYKKSYTITGSADAGYIALLYEASQKPLHTTTYQ VEALTVK >gi|228309129|gb|ACLR01000009.1| GENE 8 8451 - 9812 1132 453 aa, chain + ## HITS:1 COG:BB0411 KEGG:ns NR:ns ## COG: BB0411 COG1864 # Protein_GI_number: 15594756 # Func_class: F Nucleotide transport and metabolism # Function: DNA/RNA endonuclease G, NUC1 # Organism: Borrelia burgdorferi # 291 430 40 175 195 105 36.0 2e-22 MSSLLYNRRSSRQRRLLHKSTVPQSCKQDCPDFAERMKRKALRVWSEGSIPPYVTEAESR KQHSDSPLCNSRQILLLVGWMALLLVGCKPQGTSQPELPTELALYDRTGASVRVVNPEPL DFFVTVEAPTSWTLTASPDAWLSVSPSEGNAGKQEVIVSISANEGGERKAQLTLSANGKS VSYTITQQQVAGHTGGSGEYGRETILGDVSLLEAPKLSGRSSAYYITHRVEQEQRVNFSV EYDVVYHHPIWVCYSADEYTCQRHTRRSIDAWSWDPFVPSQYEVTQSAFRGYDRGHIVAS ADRLYSKEANEQTFYYTNMSPQRHNFNAGVWLQLEKLVQEWTRNGRLRDKLYVVKGGTLR EGETLGVTVGGITVPRYYWMAILAQRGDHYQAIAFWVEHTRPAEVARPRTVAISIDKLEE RTGLDFFHNLPDNIETRVEATHPTDDLSLWPGI >gi|228309129|gb|ACLR01000009.1| GENE 9 9826 - 10023 135 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 24 64 1 41 58 67 85.0 4e-10 MRLLHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSRQSCKQDCETVDFCNSLL LTKAS >gi|228309129|gb|ACLR01000009.1| GENE 10 10131 - 10400 499 89 aa, chain + ## HITS:1 COG:RP627 KEGG:ns NR:ns ## COG: RP627 COG0234 # Protein_GI_number: 15604474 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Rickettsia prowazekii # 1 89 1 94 95 100 60.0 6e-22 MTIKPLADRVLIKPATAEEKTQGGIIIPDSAKEKPLKGEVLAVGKGTKDEEMVLKVGDKV LYGKYAGTEVEIEGEKLMIMKQSDVLATL >gi|228309129|gb|ACLR01000009.1| GENE 11 10452 - 12086 1648 544 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 544 3 547 547 639 59 0.0 MAKEIKFDIEARDLLKRGVDQLSDAVKVTLGPKGRNVIISRSYGAPHITKDGVTVAKEIE LENEFENMGAQLVREVASKTNEDAGDGTTTATVLAQSIINVGLKNITSGANPMEVKRGID KAVKAVVESIRKQAKEVGDDLEQIAHVATISANGDEEIGQLIAQAMEKVKKEGVITVEEA KGIDTTVDIVEGMQFDNGYISPYFVTDTEKMECRMEKPYILFYEKKLSTIKDLLPLLEKV LQQGRSLLIIAEDIESEALTTLVLNRLRAGLKICGVKAPGFGDRRKEILRDMAILTGGTV ISEDTGLTLENATIDMLGSAETVTVVKNKTTIVNGDGDKEAIADRANQIRHQIENTKSDY DREKLQERLAKLSGGVAVLYVGAGSEVEMKEKKDRVEDALSATRAAIEEGTVPGGGTAYI RAISSVEKLKGDTDDERTGIEIVKRAIEEPLRQIVANAAKEGAVVVQRVRDGKGAFGYNA RTDSFEDLMKHGVIDPAKVTRVALENAASIAGMFLTTECVIADIKEDKPDPAAMAGAGGM GGMM >gi|228309129|gb|ACLR01000009.1| GENE 12 12256 - 12666 436 136 aa, chain - ## HITS:1 COG:CAC1763 KEGG:ns NR:ns ## COG: CAC1763 COG0792 # Protein_GI_number: 15895040 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Clostridium acetobutylicum # 3 118 4 120 122 60 34.0 8e-10 MALANELGAAGERAAQRYLLSRHIRLLEINWRDPLCEIDIIASDGRHLLIVEVKSRMEYT ATSPLDAVDQAKAHQMMLGGMRYAQRMRINLPIRYDVIEALYCPASDLFEIKYHKGYFSA EEIALQETLPHGSVQP >gi|228309129|gb|ACLR01000009.1| GENE 13 12688 - 13635 1261 315 aa, chain - ## HITS:1 COG:VC0489 KEGG:ns NR:ns ## COG: VC0489 COG3176 # Protein_GI_number: 15640516 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Vibrio cholerae # 36 276 310 538 586 103 27.0 5e-22 MSATEQPIIAPIDRQLIRQELTPELFVRKTNKSNNEIYAFRAAQAPQTMREVGRLREESF RAGGGGTGLECDVDKYDLMDDGYVQLIVWSPELEKIMGGYRYILGEAVLRHQEQTDALAT SHMFGFSEEFVRDYLPYTIELGRSFVSQEFQTTRAGLMSSIYTLDNLWDGLGALTVIYPE IKYFFGKVTMYKTYNKYCRNLILKFMEIYFGDKDHLVFPMNPVEVDIDPAEIDRLFVKND LKSDYRTLKAEVRKHNINIPPLFNAYMSLTPKIRIFGTAINDEFGDVEETGLLTPIADII PEKKERHIDTYQQAK >gi|228309129|gb|ACLR01000009.1| GENE 14 13632 - 14516 790 294 aa, chain - ## HITS:1 COG:VCA0646 KEGG:ns NR:ns ## COG: VCA0646 COG3176 # Protein_GI_number: 15601404 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Vibrio cholerae # 62 267 61 268 605 99 32.0 6e-21 MCAISRTFAVNLMQSMPEESFHPQQVDIAAILNRRRKKPLPAFVTNGVARLIHQREINDV LQRYGHLEGVDFMDALIQEFRIDLTLVGAEHLPADPRALFISNHPLGGLDGICLTHLIAG HYHSDIRYIVNDLLLNLKPLANIFVPVNKYGAQARSSIQRMHEALESDLPVITFPAGLCS RLIKGQIQDPLWRPSFIKQARQFRRPIVPLFFHGRNSMKFYRIEQLRKALGIRFNIGTAL LPHEMFAAQGSSFTVVVGEPIPYETLEGVKPSDLPRQVELIRQQVYQLKDQLSK >gi|228309129|gb|ACLR01000009.1| GENE 15 14947 - 16107 1166 386 aa, chain + ## HITS:1 COG:alr4031 KEGG:ns NR:ns ## COG: alr4031 COG0614 # Protein_GI_number: 17231523 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 44 381 81 421 426 186 30.0 5e-47 MDTLRCMKYLLSGLVLSLLLISCGKGGSDEGTAGGSEVDSTAMIRYAEGLQIKRAGAVTL VTISDPTHDSNEVYRYALVPREQAQELAAEVPEGYTKIETPVRRVIVMTTLQLSNFIKLD AVDRVVGMPSTRFLFNEEMQSRLASGAAKRIGIEGNFDSELIMALQPDIILVSPFKRGGY DVIKQLDIPLITFLGYKETSPLGQAEWLKFTALLLGMEERAETIFSTIEQRYHELQALIT DDLPRPKVLSGELHGGNWYVVGGASYLAHLFEDAGADYFMADDKESGGFYVDFETVYAKA ADADYWRIANSYDGAFSYDVLGKTDARYRDFKAYRDKQVLYCNLRERPFYELSPVEPEVV LADLIHAFHPQLLPDHEPVFYSILTR >gi|228309129|gb|ACLR01000009.1| GENE 16 16116 - 17150 1189 344 aa, chain + ## HITS:1 COG:alr4032 KEGG:ns NR:ns ## COG: alr4032 COG0609 # Protein_GI_number: 17231524 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Nostoc sp. PCC 7120 # 6 344 23 360 362 235 41.0 9e-62 MRRPIIAFTVIALLIVVFFVLNLSLGTIAIPFDQVVRILFGADAGGDEIWRNIIWKSRYP QTITALVAGAGLSISGLQMQTVFRNPLAGPSELGISSGASLGVATFILLSGSISQRALVR MGFVGEMAVSVAALLGALLVMSIIMTMAQRVRGNVVLLIMGVMIGYIANAIIGVLKFFSN DEDVRSYVIWGLGSFAKVSGDQVTTFVLIMLVLIPLSFLLIKVLNLMLLGENYARSLGLN YGRARHLVIFSACLLTAIVTAYCGPIVFIGLAVPHLCRTIFATSNHLTLMPAVTLVGALL ALCCNLIARMPGMEGALPINSVTALIGAPIVIWVLFDKRRREQL >gi|228309129|gb|ACLR01000009.1| GENE 17 17155 - 17952 212 265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 25 230 294 503 563 86 28 2e-16 MTSHATIELCDLSIGYHQMKRTRVVASQLNATIWSGQLTCLIGSNGVGKSTLLRTIAAFQ PKLGGALLVEGKEIQQYRAKELARRISVVLTERLIMSNTTAYEMIALGRSLYTGFWGQMN ESNRQAVDEALQLVGIQPLAKRMVDSLSDGERQKVMIAKALAQETPIILLDEPTAFLDFP SKVEMLQLLLRLSRETHKTIFLSTHDLELALQIADQVWLLDDDHKLHMGPPRTLAGDGTL PSYFEAKGIDFDPETLHFSIHASNV >gi|228309129|gb|ACLR01000009.1| GENE 18 17949 - 19742 1743 597 aa, chain + ## HITS:1 COG:MJ0022 KEGG:ns NR:ns ## COG: MJ0022 COG1903 # Protein_GI_number: 15668193 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiD # Organism: Methanococcus jannaschii # 255 520 10 273 362 187 39.0 7e-47 MILIIGGTTEGRKALEVCEEAGKPFYYSTRGASQELTMHHGIRLEGGMNGEEMAHFCTER AIALIVDAAHPFAMGVHQSVADCVSRLQLPVIRYERTFPALPASVMSLDSFDAALTYLLK QQPRRLLALTGVNSIERLRAYWTQHETYLRVMPIAETEERLRQSDFPLERVVYYDKEQCD RELFATLRPDMILLKESGDTSGFAAKVEEALALGITVLVIRRPQIPYPATVTVEGPVGLR RSIERLLGSDFFPQRIGLTTGTTATAAATAALLTLLNEESYSEVTVTLPQGERVPFPIQH TELTAQGARAVAIKDAGSDPDVTDGAEIVADLSLTQAHSGVSFLQGEGVGRVTLPGIGLE VGEPAVNPVPRQMMRQALGALVDLSQVGIDLTISVPEGRRLAHSTFNPRLGILDGISILG TTGVVRPYSSEAFVESIRRELEVSKSVYGKHLVLNSGGRSERYLKGRFPDLPANAFVQYG NFIGETLSLANELGFPQITLGIMIGKAVKLAAGELDTHSKKVVMDKAFIIALASASGASE AQKQQISEMTLARELWQIFPDGTHPLYQSIVDHCYQVCKPLVPSAQLEVLLIPDSQL >gi|228309129|gb|ACLR01000009.1| GENE 19 19753 - 21054 1658 433 aa, chain + ## HITS:1 COG:sll1501 KEGG:ns NR:ns ## COG: sll1501 COG1797 # Protein_GI_number: 16329614 # Func_class: H Coenzyme transport and metabolism # Function: Cobyrinic acid a,c-diamide synthase # Organism: Synechocystis # 6 428 2 440 482 266 37.0 5e-71 MSTLPSLLIAAPLSESGKSTLTMGLLRAYTRRGLATQAFKCGPDYVDPKLHSVATGRPAV NLDLFMYGAERVQALYDHYSQDAQAVIVEGVMGLFDGYDRDKGSAADIARLLDLPVVLVV TPRSMAYTVAPLLYGLQHFDPRVQIAGVIFNKVSSERHLTYLTQAATDAGVPVLGSLPRV DDIAIPSRYLGLDVDDLAQIDRYADQVADLLEQHLDIDRLLAISSERKERSHEAPALQKL ASSTPRRIAVARDDAFNFLYQENVRQLEQWGEVTYFSPLADKELPPSDFVYLPGGYPELH LAQLSANKSMLDSLRDYIRGGGAMLAEGGGMLLLCEAIVDEKGSSYPLVGALQQTATMQQ RGLALGYRQLEIEGVAVRGHEFHYSRIIDPLPTVAQQYNAWGDPVATALWHTDHCYATYT HLALTEQLLSHLL >gi|228309129|gb|ACLR01000009.1| GENE 20 21246 - 22814 1632 522 aa, chain + ## HITS:1 COG:BB0411 KEGG:ns NR:ns ## COG: BB0411 COG1864 # Protein_GI_number: 15594756 # Func_class: F Nucleotide transport and metabolism # Function: DNA/RNA endonuclease G, NUC1 # Organism: Borrelia burgdorferi # 351 515 16 176 195 72 28.0 3e-12 MANRTYRLLFTLMALSWGLLLTASCQPTDRQGDAEHPQADIHQTFLASQQDYDLRVAGTA WEAGDQIGIYVRRTAQNTTWSAEQLLHNNLHYKTTRGGSVATFDPADEQQKVQWDSSMKY DVLAYYPYNAQTQGGKIAYSVADQVSLKPLLISDNLSAIASDGAKQLVFRQALASLRFEM RSEDGGSLEGVTVRIVGMPTTGSLDLYSRQWQVDASSTGEISVPVTVSGATATATALILP IKTTTSEMKVLFTLSNGRTYTWPLREGQSLVMGQQRTHTITLKDTGTGKVAEVGRYLELP AKKNIPNTLEVQHNLPSNPSARNYFLLYNTKLHLAHYVAYPLYKDLMGSGRYERWQYDAS VPSQFQPNLNKPYVDGYSRGHQIPNADRNANPTLCYTTYYFSNMVPQNQQHNGGIWSNLE NQVRTLANGVDTLYVVTGVGFDNTNYQYAHDRDGMACPIPDYFYKVVVWRDEQERWHSKA WCIPHEGFSGKPNKYQTTLKKMEEKTGFDFFPALNDVTVLND >gi|228309129|gb|ACLR01000009.1| GENE 21 22832 - 23737 836 301 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469352|ref|ZP_04054370.1| ## NR: gi|228469352|ref|ZP_04054370.1| hypothetical protein PORUE0001_0300 [Porphyromonas uenonis 60-3] # 1 301 1 301 301 590 100.0 1e-167 MNKLLTTISILLATLLLAASCTKEQSRCTTCPDADGAQAKDYIVFKSNIRLGDKEVRATD ERFDVSDQIGVYARGAEERNNLHYHAIPGGHIAIFHPTTMSDRIYPSTVRELDFYAYAPY RTDVQKGIIHLNLIKEPIDLLWAHHREVAPRVEKKEYTLLFGHVLSRIVFTLQGLPAGVT LQSMKLQGMVVEGDFDVLTGELRTPYSSKGTLPLTVSADKHSASSLVLPKDVVDAQLQLT LSNGRTYTKEIKQLGIISNKIYYYNISLDGQDKISIDLVNGQIVDWEDDGSVSNIVATPT K >gi|228309129|gb|ACLR01000009.1| GENE 22 23773 - 25209 1984 478 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469351|ref|ZP_04054369.1| ## NR: gi|228469351|ref|ZP_04054369.1| hypothetical protein PORUE0001_0301 [Porphyromonas uenonis 60-3] # 1 478 1 478 478 769 100.0 0 MKKLLVGALALLALTACNKDNKGECLQQEAMQFGSNIPALNLRMAGNAFEANDAIGISMT GDATATNVEYKTTAGGATATFAPAATGLTFAEGQTVNFVSYYPYSASATTNLAIDLTNDQ TDVLYSNNLTGIKTAKAANGANHVLQFTHKLALVSFTMTGLPAGTTITLAQLEGIVTTSS MKIADGTLTNGTAKATQKLQLAAGTFAPTIVIPATNANAKLVIKLSDGKSYSYTFASLAL QSGKNHKFNVTLASGAITVDQVNGQITDWDVVDGGNVTVVPDNTGGVTPPPTPQPQPGNA ELLFPGADFEDFAAFKGTLNKFGLKNYATEAAGAGRNGSKALHIKGTPKDNDYVFTATNK EGKDFNGKTKITFYIKGTVTGKSLSFNLYPEDKTAPDLFVTKKGEKYYTYNLGVVNDAEA NLSVAKNNQYNGSITATDWVKVTLDITGRSIAKSGNLIAFKVGKGVAWDLYIDDITIE >gi|228309129|gb|ACLR01000009.1| GENE 23 25295 - 25675 271 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 33 67 1 35 58 73 97.0 3e-12 MSLRSFYPEERLLHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSRQSCKQDCE TVDFCNSPEEIGKRHGANEHSPRSRDIKVRKNEMKLRKNEIKVPKDSSVPRRIIHDLHRR IGRFPR >gi|228309129|gb|ACLR01000009.1| GENE 24 26019 - 28022 2367 667 aa, chain + ## HITS:1 COG:MA0905 KEGG:ns NR:ns ## COG: MA0905 COG3408 # Protein_GI_number: 20089784 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen debranching enzyme # Organism: Methanosarcina acetivorans str.C2A # 1 639 22 672 680 259 29.0 2e-68 MSYLKFDRTTLSNLDRSLQLEHIRSNRGGAFNCTTLVGCNTRKYHGLLVVPLPHLSRHNH VLLSSLDATVIQHGAEFNLGVHLYGDGTVYPNGHKYIREYNIDKMPRTIYRVGGVVLQRE SIFCHYKNQVIIKFTLLDSHSETTLRLRPVVAFRDVILLSHENDTADTTVHPVGTTGVRT CLYEGYPDLYMQVDAPSHWVDEGYWIKNLHYPKEQIRGYESCEDLYSPGYFEMDLRNGES VYFTAQLEEVDVTTLPALFDSEVAHRKARVDLQSCLRNACSQFYYKPESNRHYILAGFPW YGVRARDEMVALPGCSIYSDHPERFHNVMSTFIRSSINFIKQIALPLDMEGVRDPDVGLW AIRAIQLFLAEYPDDSHRTFYLDFVGRIIDYYLSDRHPILRIEPNGLLYAEGSGTPPVTW MDSTIAGQAVVPRRGYLVEVNGLWYNALCFYREARGVGFPKELAGVIERLEPAFEQTFVN PYGYLYDYVTKEGYRERAVRPDMLIAISLPFCPLSRAKQRQVLGIVTSELLTPKGIRSLS PRSEGYVEQCSGLQEQREHAYYNGSAWPWLLGAYTDAYLKINGRSGVTHLARLLGDIQDE LQHHGISTLSELYDGNPPYDSHGGISFAMSCAEVLRALVTLERYNSEETPLANYLYYTTS NEERPTR >gi|228309129|gb|ACLR01000009.1| GENE 25 28075 - 28932 226 285 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469333|ref|ZP_04054351.1| ## NR: gi|228469333|ref|ZP_04054351.1| hypothetical protein PORUE0001_0303 [Porphyromonas uenonis 60-3] # 1 285 1 285 285 565 100.0 1e-160 MRHQLLLLTILLSCGLIVSAQNTWDGLLTTVEHPTDPARGRVLAIMTNDAYIPIQTKDGV YASATDPLLLSGKSIQLDSIYHFVCNREGDSYHYDFEQLYKGAKYVTAEGWFVTALMGED PNTGVVIPGIESFFLTKDKVRMDDAFTEWGGIVTALGGWTRKHLYAVNRDLTFTTPPDSI YTIRFVEIGRSYMATHVLSSKLTSIDLPTERSLAPIIKLEDEKLLIRSTRPISFVEVYSP EGYASRYETDDREEIVIPLQYASHCSVVHIEFADGSTPFTQKLLL >gi|228309129|gb|ACLR01000009.1| GENE 26 28998 - 30242 1422 414 aa, chain + ## HITS:1 COG:Ta0340 KEGG:ns NR:ns ## COG: Ta0340 COG0438 # Protein_GI_number: 16081471 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Thermoplasma acidophilum # 3 413 26 388 388 222 32.0 1e-57 MYGWEFPPHISGGLGTASYGLTNGMAEQSDMDITFVVPKLYGDEDTSHITLVGADRTPIV YHDHSAEYLRSRLHNEAEVSFYQAAREHIYDDFRYRCPNDLGCLEFSGAYPDNLLEEINN YSIVAGVIARTVPCDIIHSHDWLTYPAGIHTKMVTGRPLVIHVHATDFDRSRGNVNPQVY AIERQGMDYADAIVCVSNLTRRTVIDKYGQSPDKVFTVHNAVEPLSPELLALPNKQHTGD KVITFLGRITMQKGPEYFVEAAHKVLQHTDGIRFVMAGNGDMMDKMIDLVARKRIADRFH FTGFLRGQQVYEMLRSSDVYVMPSVSEPFGISPLEAMQCGVPSIISKQSGCAEILRYAIK TDYWDVDAMADAMHALVSYPTLHEHLKQKGIEEVNNIVWSKAGLRLRAIYDRLV >gi|228309129|gb|ACLR01000009.1| GENE 27 30267 - 31523 1292 418 aa, chain + ## HITS:1 COG:MA4052 KEGG:ns NR:ns ## COG: MA4052 COG1449 # Protein_GI_number: 20092845 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-amylase/alpha-mannosidase # Organism: Methanosarcina acetivorans str.C2A # 1 382 1 390 396 237 35.0 2e-62 MIQIILHFYLHQPFRLKSYPFFNIGSDHYYYDDFANEEILRQVVDRSYRPALELIEQLIE AHPDFRLALTLSGSVLTQMELHTPDMIQLLKRLVKSGRIEILGEPISHGLCGLYDEEEYA NQLRMYRTRISSLLGVSPVTLSNPELIYSDRIAQIAHSQGYKAIVTEGAKHLLAWKSPNY LYNATTEGVSLLMRHAELSDAIAHDFARYDSPLYPYTTERFFATLEAEQGDYALVSLPLE TLGSVWSRETGIFEFLRALPEQGYKRGFTFTTPQEIATHCTPQDTIQATYPVSRMGEERD TSLWTGNELQQCVIQKLEEWGERIRLSRDQRLLEDWINLQGSDHLFYMTTKLGGPGAFSP YETPYAAFTNYMNVLSDFLLRVSAEYPTSMGNEELSALLQTIENQNKKIAQLEAQLAK >gi|228309129|gb|ACLR01000009.1| GENE 28 31555 - 33666 2320 703 aa, chain + ## HITS:1 COG:mlr4139 KEGG:ns NR:ns ## COG: mlr4139 COG0339 # Protein_GI_number: 13473513 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Mesorhizobium loti # 47 700 34 683 684 402 37.0 1e-111 MTANTPQATALLSDLFTAPETPYGSFPFDQFFDLSSATATEQTMETFRTAMQEAITLHRA EIDAITAQREPATFDNTIRRFEESGEALEAVTGAFYNLLSAYSCPEMMQLSETFSDWLSK LSTDTLLNEVLFARIRSVYDQREELHLDEIDLRLLTESYEGFADNGALLVGAERERFREI NEQLSQLTTRFAQNKLCDEESWTLFVPADESDRLRGLPQQILDDAKEKARTASEAHGEGY LFDLSAPHVGAIMKHCADRELRYKMYLGRGSVGNRDNAQNNRQIVCQIATLRGELARLLG HPNYATYRLKHRMCNSPEHVEQLLDDLTKYYRQTALDELDELDREAGFELESWDLSYYME RHSEQTFGVKEEELRPYFPLSQVISGVFAIATRLYGITFAPAEEVTVYHPDVRPYQVLDR DGAHLGLLYLDFFPRKGKRSGAWMNNLREWTPTQRPHILLVMNFTPPTAGKEAMLTLSEV HTLLHEFGHSLHGLLTQTRYSSMSGTNVERDFVELPSQFMENYLLQPEVVTELLSKHYQT GEPLPAKLLNKAIQATQYPVGYSTIRQVIFGKLDMAYHTLAEGESLPDDLYTYERETLRG TTLRDRERDPQHPKHIVATAFSHIFAGGYAAGYYGYKWSEMLATDAFERFSKEGIFSPTV ASDFRHQILERGDELDPMELYVRFRGRKPTLAAMLKRDGITAN >gi|228309129|gb|ACLR01000009.1| GENE 29 33679 - 36093 1703 804 aa, chain + ## HITS:1 COG:no KEGG:PG0569 NR:ns ## KEGG: PG0569 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 352 525 238 407 508 113 39.0 3e-23 MRLRWIWFVLVLSLLSRWPVVGQWQAHFADSVALSPAVWQGTLDKFRCHTSRGLQLYDDK ARGITNYAYIKTNVPLSKQMTWHGKVRLDYTPSTVSNVKLPLYCYEALDDGTSNYVVLKM EDNQCLRLAECRLILQKNGRVNTSLTSEILTYDYFNEMRQEGGVIDFVLQYNPTAERRWS LWVRHRDSDLYKFVGSAGSTTPFSSTTKSYPLFFACQYSKSRSQHSSLEFLDIYPSLVSP DELLGERNVVPAKDFYKAFNQRDPHTVEVLCAEPADLSTATIAVAPSWGKLTTAAEGKSI YIRSEVAIPEGEYAVSLRGVRTASGLKVENAIYTIAVNYDQPKPPRDQFALTFSEFMANP LKGASEYLELHNPSGQKLDASDYSVGVQRRGKVTTWYPLSSRSCPIPAGGYHAFTTSVEG ITAFYEAPRDSLTQSASLPQLANKGFTIELLRHADSTVVETFRYDPALLGKLRSQRGVAL ERYISPTGDKSQEFWGAAIQSAHFATPGQRNSIRPSGGSPSDTTHTSALLPLYITEIMAR PTVDGSEYIELYNPNDTTVNTGHLGLVIARSGHPSKVCPLPPHPAGGIPPRGYLALTPST HPLERLYYAKPDSLLLFPEMPQLPDSECAIRLVQLANDSIVEEVYYDINTFPKALQKVKG VAQERIIPDKQSQDLSNWTAAEAWANYGTPGRQNSVYGHSSASGESLDLPKQRTLLSLPQ LARLVLQEISDGETTCTATLYAVAGYPLAQYDHASTETLCRAIVERQSLAELLPVTYATR AILLVELRHPDRKRAYPLVSIIVL Prediction of potential genes in microbial genomes Time: Fri May 27 08:55:24 2011 Seq name: gi|228309126|gb|ACLR01000010.1| Porphyromonas uenonis 60-3 deg1118640599569, whole genome shotgun sequence Length of sequence - 526 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 67 - 432 408 ## gi|228469361|ref|ZP_04054378.1| transposase IS3/family protein Predicted protein(s) >gi|228309126|gb|ACLR01000010.1| GENE 1 67 - 432 408 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469361|ref|ZP_04054378.1| ## NR: gi|228469361|ref|ZP_04054378.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 216 100.0 4e-55 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITARTIRNWLRTFGVELPNQ STMSKTNKNKAVDPDYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 08:55:32 2011 Seq name: gi|228309122|gb|ACLR01000011.1| Porphyromonas uenonis 60-3 ctg1118640599590, whole genome shotgun sequence Length of sequence - 3127 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 210 235 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 255 - 314 1.6 - Term 724 - 757 6.1 2 2 Tu 1 . - CDS 768 - 3125 1304 ## COG4886 Leucine-rich repeat (LRR) protein Predicted protein(s) >gi|228309122|gb|ACLR01000011.1| GENE 1 3 - 210 235 69 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 69 1 69 84 139 100.0 7e-32 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFCCE >gi|228309122|gb|ACLR01000011.1| GENE 2 768 - 3125 1304 785 aa, chain - ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 2 118 142 258 292 99 53.0 3e-20 TALAELDCSSNQLTSLGVSDCTALTELNCWGNKLTSLDVSGCTALTTLSCFTNQLTSLDV SGCTSLTSLRCECNQLTSLNASGCTALTTLECSYNQLTSLDVSKNTALTQLYCYGNQING ENMTRLVNSLPDRKGMSAGSLVVSRSEDEKNLCRPSDIAIAREKNWIPKWHNGDSYKGIG EGVITMTTSKAVGEKVKLEIEANGDVLIEGVSESPQQYCNDYTLTSQTITIRGDVTTLYC YNNQLTSLDVSGCTSLTNLNCNSNQLSSLELLQNSALTSLACSRNELKSLDLSACTRLKS LECYRNKIRGNAVAQLVESLPDRYGKESGKFYFVYYSEDESEENFCYRPAVGRANDKNWR PQKHYSFSWEDYFGVMDEGVVMMRTAQEVGSQITLTLEAKGDVAIDGVKGVPETDGKPHQ YTLLSQDVTIRGYVTKLHCSGNKLTSLDLSTTVPLVELDCSNNQLTALDVSQNAAVTSLT CYRNQIKGEAMALLIKGLPQLPLRSTHLFGIVSNAADEGNVFLKADVERVRDKGWSPMKW NEERHQYEPYAGKETETFAVTLTKEGKGTITATGADDLTAVPYGTELTIVATPTEGYELI SLTAGEEDILATKKVVVTDNVTVKAIFDQATFAVSLTKEGKGTISATGADDLTAVPYGTY LTIVATPAAGYKLTALTANGKDILATKKVVVKGATEVKATFVDHTGVETTVTQQVKLYPN PATDYVIVEGVTPASEVTLHSLTGERLYAGRTDSRGVLQIDLTPYADGGYLVCVAGETHR VVVRR Prediction of potential genes in microbial genomes Time: Fri May 27 08:55:39 2011 Seq name: gi|228309112|gb|ACLR01000012.1| Porphyromonas uenonis 60-3 ctg1118640599713, whole genome shotgun sequence Length of sequence - 10556 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 64 - 123 1.5 1 1 Op 1 . + CDS 230 - 2689 2639 ## PG0534 hypothetical protein 2 1 Op 2 . + CDS 2982 - 4901 2853 ## COG0443 Molecular chaperone + Term 4934 - 4977 12.2 3 2 Tu 1 . + CDS 5162 - 5590 372 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Prom 5675 - 5734 2.1 4 3 Op 1 12/0.000 + CDS 5787 - 6563 668 ## COG2966 Uncharacterized conserved protein 5 3 Op 2 . + CDS 6560 - 7054 715 ## COG3610 Uncharacterized conserved protein 6 3 Op 3 . + CDS 7070 - 7798 653 ## BF2504 hypothetical protein + Term 7833 - 7882 13.0 7 4 Tu 1 . - CDS 8087 - 8425 221 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Prom 8358 - 8417 3.8 8 5 Tu 1 . + CDS 8449 - 10062 2542 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) + Term 10087 - 10132 8.2 Predicted protein(s) >gi|228309112|gb|ACLR01000012.1| GENE 1 230 - 2689 2639 819 aa, chain + ## HITS:1 COG:no KEGG:PG0534 NR:ns ## KEGG: PG0534 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 9 819 23 827 827 819 49.0 0 MRSLHYIALLLCILLQGCALALHGQTTDTTAVATPHRVALTGYVLDRDREPIEFASVRVE GTSIGTWSDLTGAYRLELTPTTDSVVVSYSSIGYQTVRQVYPQGISRDMHFNPMLGENAI NLGTVTVRGEARPPSMERITTQTLAMEASPTRSIESMVATYAGVTQHNELSTQYNVRGGS FDENLVYVNGIEVYRPLLVRSAEQEGLSFVNTDLVERVYFSAGAFDAHYGDRLSSVLDIQ YKRPTKLEGAVTLGLMNNSIYVGGKHGRFTHVTGIRTRMTQQLLAKMETRGEYNPFYADA QTYLTYTFNDRWRIEGIGYYSWTQYRFRPQQRETTVGSLQNAKHFTVYFDGQERDRFSTL FGALTLHWRPSSQGAHRLDLSLYNSNERESYDITGAYYLQKEADPTTGSDKQELLATGVN HEHARNLLRYSVAALAYSGNQRLSETHRLMWGAELRGEQIADYISEWVKLDSAGYNLPRD PNLIKMQSNLYSNVSLRSARASLYLQDEMQWQTPSGRYNLTAGLRGSFWSFNKKADFSPR LVASWRPKELSDLLVRAAGGLYYQSPFYKEIRIIEADAMGNQSVLLNDQVRSQGSAQALV GVDYNFLVAGRKFRFTAEGYYKHLFRINPYYVDNVKQRYLGQNLGTGYIVGLDVKLFGEF VPDVDSWFTASLMRGRQTIEGYGEMPLPHVPDYNLSLFFQDYFPGYKRITLSLRGVLTGG LPQLNAAEGFGRPLFRGTAYKRVDIGMQYTLWDRETAQPGAWRWLQALSKVSVGVNVFNL FDMTNIGSYYWLSDAYRNQYAVPNYLTGRQYDASLIVRF >gi|228309112|gb|ACLR01000012.1| GENE 2 2982 - 4901 2853 639 aa, chain + ## HITS:1 COG:sll0170 KEGG:ns NR:ns ## COG: sll0170 COG0443 # Protein_GI_number: 16331261 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Synechocystis # 1 637 1 633 636 686 59.0 0 MGKIIGIDLGTTNSCVAVLEGGESKVIPNSEGRMTTPSVVAFVEGGERKVGDPAKRQAIT NPTNTIYSIKRFMGETYDQIQKEAERVPFKVVKGDNNTPRVDIDGRLYTPQEISAMILQK MKKTAEDYLGTEVTDAVITVPAYFNDSQRQATKEAGEIAGLKVRRIVNEPTAASLAYGLD KKGSDMKIAVFDLGGGTFDISILELGDGVFEVKSTNGDTHLGGDDFDHVIIDWLAEEFMK DEGVDPRKDNMALQRLKDAAERAKIELSSSTSTEINLPYLIPVDGIAKHLVRTLTRAKFE QLADKLIHACVEPCNQALKDAGLTASDINEVILVGGSTRIPAIQEIVKKIFNQEPSKGVN PDEVVACGAAIQGAVLTGEVKDVLLLDVTPLSLGLETMGGVMTRLIDANTTIPTKKSQIF TTAVDNQPSVEIHVLQGERSLAKDNKSIGRFTLDGIAPAPRQTPQIEVTFDIDANGILNV TAVDKATGKQQNIRIEASSGLSDDEIKRMKQEAEANAKADEEAKARIDKLNQADSIIFST EKQLKELGDKIPADKKAPIEAALEDLRKAHKAEDIPAIDKAMEELNTAFHAATEQMYNQA NAQQQAGPQPGASAQPNDNASAKGNDSSDVADADFEEIK >gi|228309112|gb|ACLR01000012.1| GENE 3 5162 - 5590 372 142 aa, chain + ## HITS:1 COG:RSc0048 KEGG:ns NR:ns ## COG: RSc0048 COG0735 # Protein_GI_number: 17544767 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Ralstonia solanacearum # 15 141 30 163 172 57 29.0 6e-09 MTRHDDIAEYFKQKGVRATANRILVLRALMAATQPMNLNELETTLYPMDKSSISRVLTLF LAHDIVHAFEDGRGVCNYELCASDGVCLGEDEHIHFYCERCQHSYCMEMLQVPPLRLPKG YSAHAISFVIKGICPNCQNKHS >gi|228309112|gb|ACLR01000012.1| GENE 4 5787 - 6563 668 258 aa, chain + ## HITS:1 COG:Cj1166c KEGG:ns NR:ns ## COG: Cj1166c COG2966 # Protein_GI_number: 15792490 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 10 252 6 251 258 139 33.0 5e-33 MENDLHGNSLKAVGTFLSAYATHMMGCGVHTSRVVRCTQRIGERYGYTVVTMMVQKGVLI KLYDPKSNTHFAIEDAIPPLPISFEHNARLSALSWEVVDEQLSLEEVRERYEQILAAPRT HPLFVLILVGLANASFCRLFGGDLPAMGIVFWATVVGFICKQKLIQEHVNHYIAFMVSAF VASLCTSISLIFNTDSEIALTTSVLYLVPGVPLINGVIDIVEGYIQTGFSRLVEAFLLIG CIGWGFSITLFIFRSSLL >gi|228309112|gb|ACLR01000012.1| GENE 5 6560 - 7054 715 164 aa, chain + ## HITS:1 COG:Cj1165c KEGG:ns NR:ns ## COG: Cj1165c COG3610 # Protein_GI_number: 15792489 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 3 161 1 159 164 87 36.0 9e-18 MMLIVDILLDGLFAAMAAMGFGAISDPPLRAYRSIAILAAVGHALRFVLMTVCGINIAIG SLCASLTIGFGALWLGKRIQTPITVLSIPALLPMIPGKYAYNMFFAQIMFLQNLDSMEGQ QKYMEMFFFNSIVAITVIFVLAAGATLPILLFPKRTFSLTRKKQ >gi|228309112|gb|ACLR01000012.1| GENE 6 7070 - 7798 653 242 aa, chain + ## HITS:1 COG:no KEGG:BF2504 NR:ns ## KEGG: BF2504 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 228 1 228 244 214 50.0 2e-54 MNTFWNTIAQYNAATWPIQILLVIAAVVVLYLLVKRPSRSSTIIAKSYLILLYVWIAVAY YAIYCAERSYSILLSIYWGILALAWIKDLLEDDTQFALRDKFKPFGIFVLLLPLMYPLAS ITRGLSFPYITTPVMPCTVAIYTIGLLLLFTSRVNIFIVLLLLNWAMVGVTKTWFFGIPE DFILVLTAIPALYIFFREYFALDLHQDSKPQAKYINALLILVCIGVCIALCCALFAQISR DI >gi|228309112|gb|ACLR01000012.1| GENE 7 8087 - 8425 221 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 45 96 18 69 91 68 65.0 8e-11 MLDVSNIVPGPQGGGHSKSNKKTETLSYGVHLMTLRSRPIGISTEEFSNSSRGNEVSSRN RQIKVRKNEMKVRKKEIKVRKNFLIPPWIIDDLHRGIARFPPSVDFSPRKCR >gi|228309112|gb|ACLR01000012.1| GENE 8 8449 - 10062 2542 537 aa, chain + ## HITS:1 COG:VC2738 KEGG:ns NR:ns ## COG: VC2738 COG1866 # Protein_GI_number: 15642731 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Vibrio cholerae # 6 537 12 541 542 813 72.0 0 MTQHNIDLSQYGIKAPAEIIYNPSYDQLYEAELQPDLTGYDRGQLTELGAVNVMTGVYTG RSPKDKFFVLDDTTRDTIWWTTPEYPNDNKPTSQETWQELKRIATEELSGKKLYVVDAFC GANPDTRLKIRFIMEVAWQAHFVTNMFIRPSKEELANFGKPDFVVMNASKAKVTNYKELG LNSETAVVFNLTEKVQLILNTWYGGEMKKGMFSYMNYLNPLRGNASMHCSANTNQDETET AIFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDNGIFNYEGGCYAKVINLSKESEPDIYNA IRRDALLENVTVDANGKIDFSDKSVTENTRVSYPIYHIENIVKPVSKAGHANKVIFLSAD AFGVLPPVSILDPEQTQYYFLSGFTAKLAGTERGVTEPTPTFSACFGAAFLSLHPTKYGQ ELVKRMKAVGAKAYLVNTGWNGTGKRISIKDTRGIIDAILDGSIDKAPTKTLPYFNFAIP TELPGVDPAILDPRDTYADPAEWETKAQDLAKRFVKNFEKFATNEHGKKLQEAGPKL Prediction of potential genes in microbial genomes Time: Fri May 27 08:56:15 2011 Seq name: gi|228309057|gb|ACLR01000013.1| Porphyromonas uenonis 60-3 ctg1118640599748, whole genome shotgun sequence Length of sequence - 64873 bp Number of predicted genes - 55, with homology - 50 Number of transcription units - 19, operones - 10 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 484 - 1071 635 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 1150 - 1209 2.5 2 2 Op 1 . - CDS 1305 - 1961 657 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 3 2 Op 2 8/0.000 - CDS 1968 - 2978 844 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 4 2 Op 3 6/0.000 - CDS 2975 - 3823 857 ## COG1216 Predicted glycosyltransferases 5 2 Op 4 . - CDS 3850 - 5031 896 ## COG0438 Glycosyltransferase 6 2 Op 5 . - CDS 5025 - 6065 1059 ## PGN_1242 hypothetical protein 7 2 Op 6 . - CDS 6092 - 7135 940 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 7096 - 7155 4.5 8 3 Tu 1 . + CDS 7324 - 7497 145 ## + Term 7587 - 7613 -0.6 + Prom 7760 - 7819 2.0 9 4 Tu 1 . + CDS 8020 - 8664 952 ## COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit 10 5 Op 1 . + CDS 8778 - 9170 484 ## PG1067 hypothetical protein 11 5 Op 2 . + CDS 9192 - 10019 1127 ## COG3246 Uncharacterized conserved protein 12 5 Op 3 . + CDS 10080 - 11123 1503 ## PGN_1165 hypothetical protein + Term 11131 - 11185 16.3 + Prom 11127 - 11186 1.5 13 6 Op 1 . + CDS 11212 - 12477 1588 ## COG1509 Lysine 2,3-aminomutase 14 6 Op 2 . + CDS 12531 - 13547 731 ## PGN_1167 hypothetical protein 15 6 Op 3 . + CDS 13544 - 14947 1429 ## COG1193 Mismatch repair ATPase (MutS family) 16 6 Op 4 . + CDS 14934 - 16505 2227 ## PGN_1169 D-lysine 5,6-aminomutase alpha subunit 17 6 Op 5 . + CDS 16502 - 17302 1088 ## COG5012 Predicted cobalamin binding protein 18 6 Op 6 . + CDS 17354 - 18022 1044 ## COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit 19 6 Op 7 2/0.000 + CDS 18114 - 19253 1452 ## COG1960 Acyl-CoA dehydrogenases 20 6 Op 8 29/0.000 + CDS 19281 - 20066 1018 ## COG2086 Electron transfer flavoprotein, beta subunit 21 6 Op 9 . + CDS 20068 - 21078 1298 ## COG2025 Electron transfer flavoprotein, alpha subunit 22 6 Op 10 7/0.000 + CDS 21096 - 21875 989 ## COG1024 Enoyl-CoA hydratase/carnithine racemase + Term 21883 - 21927 10.5 23 6 Op 11 . + CDS 21934 - 22782 1237 ## COG1250 3-hydroxyacyl-CoA dehydrogenase + Term 22896 - 22941 13.7 24 7 Tu 1 . - CDS 23106 - 23393 170 ## - Prom 23591 - 23650 4.0 + Prom 23375 - 23434 3.1 25 8 Op 1 . + CDS 23574 - 26411 3533 ## COG0178 Excinuclease ATPase subunit 26 8 Op 2 . + CDS 26418 - 26801 513 ## CA2559_04765 putative transcriptional regulator protein + Term 26840 - 26880 -0.7 + Prom 26806 - 26865 2.8 27 9 Tu 1 . + CDS 26938 - 29532 3093 ## COG0249 Mismatch repair ATPase (MutS family) + Term 29549 - 29585 2.1 28 10 Op 1 . + CDS 30012 - 31574 1604 ## PG1209 hypothetical protein 29 10 Op 2 . + CDS 31614 - 33404 2227 ## COG0006 Xaa-Pro aminopeptidase 30 10 Op 3 . + CDS 33409 - 33972 836 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily 31 10 Op 4 . + CDS 34003 - 34668 821 ## COG0176 Transaldolase + Term 34698 - 34744 10.8 32 11 Tu 1 . + CDS 34975 - 35148 62 ## - Term 35420 - 35486 16.5 33 12 Op 1 . - CDS 35570 - 37237 1807 ## PGN_0294 receptor antigen B 34 12 Op 2 . - CDS 37277 - 40351 3443 ## PG0185 RagA protein - Prom 40534 - 40593 4.0 35 13 Tu 1 . - CDS 40906 - 43797 2790 ## PG0553 extracellular protease, putative - Prom 43845 - 43904 1.5 + Prom 43762 - 43821 2.7 36 14 Tu 1 . + CDS 43946 - 44134 95 ## + Prom 44295 - 44354 1.8 37 15 Op 1 . + CDS 44427 - 45266 896 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 38 15 Op 2 . + CDS 45279 - 45968 506 ## gi|228469398|ref|ZP_04054412.1| hypothetical protein PORUE0001_1486 39 15 Op 3 26/0.000 + CDS 45999 - 48239 2211 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 40 15 Op 4 4/0.000 + CDS 48264 - 49763 1396 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 41 15 Op 5 28/0.000 + CDS 49829 - 51088 1830 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 42 15 Op 6 25/0.000 + CDS 51117 - 52502 1264 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 43 15 Op 7 . + CDS 52518 - 53915 1358 ## COG0772 Bacterial cell division membrane protein + Term 54015 - 54050 0.1 44 16 Op 1 . - CDS 53919 - 54671 890 ## COG0169 Shikimate 5-dehydrogenase 45 16 Op 2 . - CDS 54693 - 55409 386 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 - Term 55418 - 55472 5.4 46 17 Op 1 . - CDS 55498 - 56442 1409 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 47 17 Op 2 . - CDS 56540 - 57547 1004 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 48 17 Op 3 . - CDS 57567 - 57959 585 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 49 17 Op 4 . - CDS 58007 - 58477 782 ## COG0782 Transcription elongation factor - Prom 58708 - 58767 3.1 50 18 Tu 1 . - CDS 58778 - 58996 191 ## + Prom 59521 - 59580 2.4 51 19 Op 1 . + CDS 59725 - 60240 452 ## PGN_0487 FtsK/SpoIIIE family cell division protein 52 19 Op 2 . + CDS 60161 - 62344 2010 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 53 19 Op 3 . + CDS 62363 - 63052 608 ## gi|228469374|ref|ZP_04054388.1| hypothetical protein PORUE0001_1501 54 19 Op 4 . + CDS 63079 - 63426 644 ## COG0853 Aspartate 1-decarboxylase 55 19 Op 5 . + CDS 63448 - 64788 1844 ## COG0541 Signal recognition particle GTPase Predicted protein(s) >gi|228309057|gb|ACLR01000013.1| GENE 1 484 - 1071 635 195 aa, chain - ## HITS:1 COG:alr3280 KEGG:ns NR:ns ## COG: alr3280 COG1595 # Protein_GI_number: 17230772 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Nostoc sp. PCC 7120 # 12 188 33 213 218 81 33.0 1e-15 MTTLRTCSDDELVCQYCEGCDRAFAELLRRYEADIHNYIFLTVADSDVADDLFQEVFIKV MRTLKEGKYRAKGKFKAWLLRLTHNMMMDHFRSEKRSLYVTNYDANQQILDLTPASDLPE DFFDDQEAMYHQISLCVEDLPEAQREVLKMRIYEDIPFKEIAERTEVSISTALGRMRYAL INLRKMVRERNIAPV >gi|228309057|gb|ACLR01000013.1| GENE 2 1305 - 1961 657 218 aa, chain - ## HITS:1 COG:NMA0639_1 KEGG:ns NR:ns ## COG: NMA0639_1 COG2148 # Protein_GI_number: 15793627 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Neisseria meningitidis Z2491 # 5 214 4 195 223 182 46.0 4e-46 MYRNYIKRLLDIICALLGLTILSPLLLVVIVVMSFANKGAGVFFSQARPGRGERLFNMYK FKSMTDERDAAGNLLPDAQRLTAMGRFIRKTSIDELPQLWNVLRGDMSLVGPRPFLATYR HIPTERKKVDIISVSIEGDSIAITPAQRVRYQVRPGITGLAQINGRNKLSYQHRFTYDAW YVHHLSFALDLKILLKTVTQTLQMKDISSATSEPSNHL >gi|228309057|gb|ACLR01000013.1| GENE 3 1968 - 2978 844 336 aa, chain - ## HITS:1 COG:ECs4493 KEGG:ns NR:ns ## COG: ECs4493 COG0463 # Protein_GI_number: 15833747 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Escherichia coli O157:H7 # 7 239 8 229 338 110 32.0 3e-24 MSVELPLSVIIPIYNGAKTIARCLDSLVAILDAATAIEIIVINDGSQDETLEVVTNYQTQ HPEQRIRIISQTNQGQSAARNKGLEVAQGAYVWFVDADDWVDSVAASYLLTLITKESYDK PYDMLCFGVRNVADEGEEVPSEWMDTSVHDFDQLQCTDGRALLTQRNLSGSVCSFLWRRA MLEEHQARFMEGLLHEDALFYWHYTAYAERVLLVPIVAYCYYQRADSTIHNPDTLHLRGI SRLEGSFRLLECAKGQDDLRSFYLKLASGFYRSGLRMVARYGTVSELKSYTQRMKQSGNH KLLMRYAGRKGAPLIRIAHCAPRLFNLIAHILPPVA >gi|228309057|gb|ACLR01000013.1| GENE 4 2975 - 3823 857 282 aa, chain - ## HITS:1 COG:RSc0688 KEGG:ns NR:ns ## COG: RSc0688 COG1216 # Protein_GI_number: 17545407 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Ralstonia solanacearum # 4 272 5 261 275 167 32.0 3e-41 MLTTGSIVLYKSNASFVEQIIEDFFRTPSQPRVETDKRLYLIDNSPTDEMCYLAELPVGK GRIYYEHQPSNLGFGKAHNIAIRLAHSEGARYHVIINPDVRFDETVLDTLTAYMEEHEEV GLVSPFVYYPDGRPQQLCKLLPRPCDVLLRRFSFSQWVRDKVNKRYEMHWLDYSKPVEVP YLSGCFMFTRMETLERVGGFDERFFMYVEDIDLSRRIGQVSKTICHPEAKITHVHSRGSY HDAKLLWHHISSMVKYFNKWGWWCDAERKEVNARYIPKEAKL >gi|228309057|gb|ACLR01000013.1| GENE 5 3850 - 5031 896 393 aa, chain - ## HITS:1 COG:PA5004 KEGG:ns NR:ns ## COG: PA5004 COG0438 # Protein_GI_number: 15600197 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Pseudomonas aeruginosa # 67 364 59 341 378 71 25.0 3e-12 MVSNEPTPPRAIAFVVNQIRPQGPLFVVRDIIAGLPEGYYKPYIIQLCTLEPQGEAMADE LQAMGCEIIELGFTRGQLELFPRSAAKLLDECLQHYNITLVHSHTYQPDIVTSYLAHRYI LLSTQHNIAKLDFTYGKGRLLGGYMCRRLMCALSRHREVVCVSHVCRDYYRKDLPTKVSV YVAPNGIDNARFTPPASSSERTQLRHQLNLPDQGYIITYCGGLIKRKDPELILRAMRRLK RRRQLPSDLRLLFLGKGPLERRCRQLAKPLGEQVQFVGFTDRVADYLSASDALITASHAE GLPLNVIEGVASGCVVIHSNLSIFDEILEHVPQMVALRFDIGNVSQCADCILKAPSVTFD RQEALEMGALYGRQRMALQYHRIYQQLLRKYLG >gi|228309057|gb|ACLR01000013.1| GENE 6 5025 - 6065 1059 346 aa, chain - ## HITS:1 COG:no KEGG:PGN_1242 NR:ns ## KEGG: PGN_1242 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 11 335 21 345 347 144 28.0 6e-33 MLLLTGLYYRDQRFEGLYQLFTFILLVGFAGLRVGLGKDYEVYENGYNWITSESFQAFEP LWKGVILGMRALGMSFRSFMILTSAITIALFFKGIRRLSISYPLGVLFFVLFNTGYLESL NGVRQSLALMITFAAFHLYVERRYWRFFLWVVLSCLVHSSSVIWLLILPMMAIRWDWRVL TALLVVTLAVGNPLFKVVGHVLEPMLPERYSFYISSDGWETHQGWVNVLTQNGMAILCLI GSLYLNKERDRVTRLAILLIAFSSMIYNCTLSSSVAMRFMYNPGIMICVALPNLLLLVKD RGYQLAIAGVMILYFIFTVNNVMDPGSSLHTYRWIYDEYTYTPTLW >gi|228309057|gb|ACLR01000013.1| GENE 7 6092 - 7135 940 347 aa, chain - ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 13 249 3 219 344 136 33.0 8e-32 MSLLQGATEDHTPKVSVIIPVYNVEQYLRRCLDSILGQTMPDWEAICVDDGSPDGSASIL AEYAEQDSRFRILTKENGGLSSARNAGTQVARGLYVNYVDSDDFIHPQTFELALTLAERD GSDIVSWVPDMVYKRRLLLRAKLGQPYDDVVPWSMSQRYDLSKVHAVCTTEVVRHATNHR WFDGVSDPIRYFYAWRHLVRRELAVETPFVEGLKFEDFPWWSDLMLHSPRVTITHLPLYY YYYNRSSISSASSECNKMTHWIAGIRHTFPQYVASASVVQWHYWKNQCLWAVICDRISKQ LYKVQDETSRETLVPLLRELWDMGAFATPYNKRTRYHQGRIKEYINL >gi|228309057|gb|ACLR01000013.1| GENE 8 7324 - 7497 145 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHSDTLRSPRHHTPEEITNTSVGNRNPPRSNQKILRNFEIFLPKFHFILPNFYFGPP >gi|228309057|gb|ACLR01000013.1| GENE 9 8020 - 8664 952 214 aa, chain + ## HITS:1 COG:CAP0163 KEGG:ns NR:ns ## COG: CAP0163 COG1788 # Protein_GI_number: 15004866 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit # Organism: Clostridium acetobutylicum # 3 212 4 213 218 237 57.0 2e-62 MKKSIDKAGLKAKLHDGMSIMIGGFLANGTPERIVDVLVECGVKDLTMIVNDTSYPDRGC GRLIANKQVKHLIVSHIGTNPMTAEQMNNGELEVEFSPQGTLAERIRVGGCGLGGVLTTT GLGTIIAEGKKVININGQDYLLELPLRADMAFIKGTVGDETGNLVYKGTTQNFQPLMAMA ADCVVAEIDELVPVGQISPEAVHTSGIFVDYIFE >gi|228309057|gb|ACLR01000013.1| GENE 10 8778 - 9170 484 130 aa, chain + ## HITS:1 COG:no KEGG:PG1067 NR:ns ## KEGG: PG1067 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 6 128 5 127 129 221 86.0 7e-57 MANPKSMIRLRMSSADAHYGGNLVDGAKMLQLFGDVATELLIIQDGDEGLFCAYDKVEFL APVYAGDYIEAVGEITQVGNSSRQMQFEARKVIAPRTDISASAADVLAEPVVVCRAHGTC VVPKKCQRKS >gi|228309057|gb|ACLR01000013.1| GENE 11 9192 - 10019 1127 275 aa, chain + ## HITS:1 COG:FN1868 KEGG:ns NR:ns ## COG: FN1868 COG3246 # Protein_GI_number: 19705173 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 271 2 270 272 353 64.0 1e-97 MDKLILTAAICGAEVTKEQNPAVPYTIDEIVREAKSAYDAGAAVIHVHVREDDGTPTQSK ARFKEALDAIYKVIPDVIIIPSTGGAVGMTAEERLQPTELMPEMATLDCGTCNFGDDVFE NTIPMMRAFGKRMIENKIKPEYECFEMGHLDTILRLAQRGEVPGDPMQFNFVLGVFGCTP ATADNLAWLVNNIPAGSTWTATGIGRHEFPLAAVAIGMGGHVRVGFEDNLYLSKGVLAKS NGELVAKAARIAHELGREIANPAEARQILSLAPRH >gi|228309057|gb|ACLR01000013.1| GENE 12 10080 - 11123 1503 347 aa, chain + ## HITS:1 COG:no KEGG:PGN_1165 NR:ns ## KEGG: PGN_1165 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 347 1 347 347 618 91.0 1e-175 MQKKGNKYGTHRVISPKGVLPQPADKIDNNMDEIYDNEILIDVQTLNIDSASFTQIAEQA GGDKAKIAEIMMGIVEKQGKHRNPVTGSGGMLLGTVEKIGDALKGKIDLKEGDKIATLVS LSLTPLRIDKIKDIRPDIDQVDIDGKAILFESGIYAKIPEDLPENLALSALDVAGAPAQV AKLVKPGDTVLIIGAGGKSGMLCCYEAKKRAGVTGKVIGMCHSQRSTDRLKALGFCDYVF SGNATQPVPVMEEIEKLTDGKMCDVTINNVNITDTEMTSILCTKDDGVVYFFSMATSFTK AALGAEGVGKDVTMIVGNGYTKGHAEITLQELRESEALRKIFTELYA >gi|228309057|gb|ACLR01000013.1| GENE 13 11212 - 12477 1588 421 aa, chain + ## HITS:1 COG:FN1866 KEGG:ns NR:ns ## COG: FN1866 COG1509 # Protein_GI_number: 19705171 # Func_class: E Amino acid transport and metabolism # Function: Lysine 2,3-aminomutase # Organism: Fusobacterium nucleatum # 6 418 7 421 425 616 72.0 1e-176 MNESRRKEFFPEVSDADWNDWHWQVRNRIETLDQLKKYIKLTPEEEEGVRESLKTIRMAI TPYYLSLIDPNDPNDPVRKQSIPTINELHVSPEDQLDPLSEDEDSPVPGLTHRYPDRVLF LITDMCSMYCRHCTRRRFAGQKDAASPKERIEKCIEYIEQTPEVRDVLLSGGDALMVSDK MLEYIIQRLRAIPHVEIIRIGSRTPVVCPQRITPELVQMLSKYHPIWLNTHFNHPNEVTR ESREACERMANAGIPLGNQSVLLRGINDCPSIMKHLVHELVKMRVRPYYIYVCDLSRGIS HFRTPVSKGIEIIEALRGHTSGYAVPTFVVDAPGGGGKTPVMPNYVISQSPHRVVLRNYE GVITTYTEPSDYKEEPCQCPDCKKARHEGVYGLLTGDRLAMAPEHLDRKERSRKWREAHK G >gi|228309057|gb|ACLR01000013.1| GENE 14 12531 - 13547 731 338 aa, chain + ## HITS:1 COG:no KEGG:PGN_1167 NR:ns ## KEGG: PGN_1167 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 338 22 354 359 273 47.0 5e-72 MPFIANIAQLKSLAIVGTAKNVGKTESLNYILGALRERYPELQLALTSIGIDGELRDQVT QTDKPEITLHEGMRFVTAENFFRKKLLPAEIFDIDRIYSSSIGRLIYARARGIGKTLIAG PPSTGGLRRVVTRMRQEGVDLTLIDGALSRLSLASPSVAEGMVLATGSAYSAQPEQLIKR MRELMRLIRLPQLTDRKLAEQLAEVDKGVRLLTDEGAIVDPGFASALTPDMWRDTTWLAE GDTLYVPGVVSDKLLSQLRLIKRHRQLVVKDFTRIFASGQAVQSYLATGREIKTLYSSKL MAVTFNPLAPSGYRLDSERMCERLSETLEVPVYDVRRL >gi|228309057|gb|ACLR01000013.1| GENE 15 13544 - 14947 1429 467 aa, chain + ## HITS:1 COG:FN1864 KEGG:ns NR:ns ## COG: FN1864 COG1193 # Protein_GI_number: 19705169 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Fusobacterium nucleatum # 62 458 62 480 487 166 28.0 1e-40 MKDLRSCIDQISGLRYVVEEMHFNSSPGRMAMLATPWSVEVEAIEQRLDEVARYIGYLSD HEQQKGMQEVAIHLCELMNVSGSIETVRQPQVICSDIDLFEIKRLALIEEKVRRLAEQYH LEILQCHSLTEVVDILDIDGERLPSFYISDSYSTVLRSLRKQMERTSEETERDELAVQCA IEEDRVRKRLTEALHPYADQIEEALMALAQIDKLHAIAQWAVAHGCCRPKPIRSGESTLT DLIHPEVAYHLAERQDRFQPVTISYSDQPTLITGANMAGKSVLLASIGLAQCLMQFGCYV TAQQVQLVPVDEVIFSIGDDQDIKSGLSSYGAEMLRLNRIIESVKEGKQVLALIDEPART TNPEEGHALVSALVQLFAQYAVRAIITTHYSGILGRCHRWRVRGFVEERLRKPLEINQLN RCIDYSLIYDTQTDAPHEALRIAEILGMDRELLDLCEKNLATKNEDK >gi|228309057|gb|ACLR01000013.1| GENE 16 14934 - 16505 2227 523 aa, chain + ## HITS:1 COG:no KEGG:PGN_1169 NR:ns ## KEGG: PGN_1169 # Name: not_defined # Def: D-lysine 5,6-aminomutase alpha subunit # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 523 1 523 523 838 78.0 0 MKTSKVGIDFAKVDKARNAAGAIAEEVQSFVDRYTTVTVERTLCRFVGIDGVDEHDVPLP NVVVTHIKEQEALSDGAFFYLANAMLATGMDPQQIAEGVARGEINLTHYPARTPQEIADV LEPYILKGMQRIVEHRERRENYLKTIGEGPKPYLYVIVATGNIYEDVIQAQAAARQGADI IAVIRTTGQSLIDYVPYGATTEGFGGTYATQENFRIMRKALDEVGEERGKYVRLCNYCSG LCMPEIAIMGAFEGLDVMLNDALYGILFRDINMQRTIIDQYTSRVINGFAGVIINTGEDN YLTTADAIEQAHTVLASDFINEQFALRAALPEEQMGLGHAFEMDPMTENGFLFELAQAQM TREIFPKAPLKYMPPTKFMTGNIFRGHIQDALFNIIGIWTHQGLQLLGMPTEAIHTPFMS DRFLSIENARYIFNNMRSIGDEVEFKEGGIIQSRAREVLDKTLDLLEEIKGEGLFTALSK GIFADIKRPLDGGRGLDGVKPKSERYYNPTLELMKNRKIQGKL >gi|228309057|gb|ACLR01000013.1| GENE 17 16502 - 17302 1088 266 aa, chain + ## HITS:1 COG:FN1862 KEGG:ns NR:ns ## COG: FN1862 COG5012 # Protein_GI_number: 19705167 # Func_class: R General function prediction only # Function: Predicted cobalamin binding protein # Organism: Fusobacterium nucleatum # 1 259 1 259 263 335 64.0 4e-92 MSGGLYSMEAKDFDRTLDLSQVKPYGDTMNDGKVQLSFTLPVPKGAEAEEAAKLLLKEMG LQNPMVVFSEELTKGFTFFNCYGSCTHTVDYSNIYVPKVESTTWGMEETDEFIRTHIGRK LVVLGASTGTDAHTVGIDAIMNMKGFAGHYGLERYDMIDAYNLGSQVPNEELIAKGIEMN ADALLVSQTVTQKDVHIKNMTEFIELVEAEGLRDKMIIICGGPRISHELAKELGFDAGFG ANTFADDVASFICQEIVRRKEAAEGK >gi|228309057|gb|ACLR01000013.1| GENE 18 17354 - 18022 1044 222 aa, chain + ## HITS:1 COG:FN1856 KEGG:ns NR:ns ## COG: FN1856 COG2057 # Protein_GI_number: 19705161 # Func_class: I Lipid transport and metabolism # Function: Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit # Organism: Fusobacterium nucleatum # 1 218 1 216 217 243 62.0 2e-64 MELDKNQVREVIAKRVALELKDGDVVNLGIGLPTMVPNYLKPGVHVMLQSENGMIGMGSA PAAGQEDPLWINAGGGAITAVPEAATFDSATSFGIIRGGHVDVSILGALQVDEAGDLANW IIPGKLAPGMGGAMDLLVGTRKVILAMTHTAKGKAKILKKCTLPLTAAGQVDLIITELCV IEVRKGQGLYVTEIRDGVTREEIEAATEATLHYVDDVKPMRQ >gi|228309057|gb|ACLR01000013.1| GENE 19 18114 - 19253 1452 379 aa, chain + ## HITS:1 COG:FN0783 KEGG:ns NR:ns ## COG: FN0783 COG1960 # Protein_GI_number: 19704118 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Fusobacterium nucleatum # 1 379 1 381 381 564 73.0 1e-161 MDFSKTPQEELFLQMIREFAEKEVKPLAAEIDEQERFPIETVQKMSKLGIMGIPIPKEYG GSGSTVQIYTMAVEELSRVCATTGVVVSAHTSLCCDPIMSFGTEEQKQHYLPKLASGEWI GAFGLTEPNAGTDASAQQTFAVEEEECYILNGNKIFITNAEYAHVYIIFAMTDKSKGNKG ISAFIVEKDDPGFSVGKHELKLGIRGSATCELIMENCRIPKDRLLGKVGGGFKVAMHTLD GGRIGIAAQALGIARGAMDETVKYTKERKQFGRSIAKFQNTQFQLADLKARIDCASLLVR RAAWCKDNGLSYNLEAAEAKLFCAETAMDMTTKAVQFHGGYGYTREYPVERMMRDAKITE IYEGTSEVQRMVIAAHLLK >gi|228309057|gb|ACLR01000013.1| GENE 20 19281 - 20066 1018 261 aa, chain + ## HITS:1 COG:FN0784 KEGG:ns NR:ns ## COG: FN0784 COG2086 # Protein_GI_number: 19704119 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Fusobacterium nucleatum # 1 261 1 262 262 310 62.0 2e-84 MKIIVCIKQVPDTTEIKLDPVKGTLIRDGVPSIMNPDDKGALEQALLLKDQFGAEVSVIT MGPPQATAILREAFAMGCDKGYLITDRRFGGADTLATSYTISQALKTIDYDIVLAGRQAI DGDTAQVGPQIAEQLDLPQITYVEHVDYDGKKTLTVMRNVEEGHETLEVDTPCMLTFLAS AYEPRYMNVPDIMTAFDKEITTLTADSFPVEEERLGLKGSPTRVKKSFTKGAKAMGTLYE DMTPEEAADLIIEKLKEKFII >gi|228309057|gb|ACLR01000013.1| GENE 21 20068 - 21078 1298 336 aa, chain + ## HITS:1 COG:FN0785 KEGG:ns NR:ns ## COG: FN0785 COG2025 # Protein_GI_number: 19704120 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Fusobacterium nucleatum # 1 335 1 391 391 379 54.0 1e-105 MDKTQYKGILVFAEQREGVIQNVAFELIGKARDLADQINEQVTAILCGYQVKGLSDQLIH AGADRVLVVDDPNLKDYLTEQYAQAVYHIITVYKPEIVLFGATTIGRDLAPRLSARLRTG LTADCTSLEIGEDRNLMMTRPAFGGNLMATILCDQNRPQMSTVRPGVMRRKADDKTRTGE VEEVKVPFDERRFKVRLVSKKHETKNMVDITEASVLVSGGRGVGTDGGFDKLKALAQTIK AEVSSSRAMVDAGIIGHERQVGQTGKTVRPDIYFACGISGAIQHLAGMEESEYIIAINKD KFAPIFQVADLGIVGDLHKVLPVLTERLKTLQANKK >gi|228309057|gb|ACLR01000013.1| GENE 22 21096 - 21875 989 259 aa, chain + ## HITS:1 COG:CAC2712 KEGG:ns NR:ns ## COG: CAC2712 COG1024 # Protein_GI_number: 15895969 # Func_class: I Lipid transport and metabolism # Function: Enoyl-CoA hydratase/carnithine racemase # Organism: Clostridium acetobutylicum # 16 256 13 254 261 270 56.0 1e-72 MTDFQTIHYSVSANEQIGTLTIDRPEALNALSTQVLSELEIVIDQIAQERTLRVLVITGA GRSFVAGADIAEMVELTPEEALAFGEHGARVFRKVELLYCPVIAAVNGFALGGGCELSLA CDLRIASDKAKFGQPEVGLGIPPGFSGTQRLPRLIGAGAAKELIYTARVVKADEALTLGL VNRVVESDALMSTVTELAEEIASKSPHAVAISKRAINRGLQSDIDTGIAIENDLFSNAFA HPEQREGMSAFLEKRKPQF >gi|228309057|gb|ACLR01000013.1| GENE 23 21934 - 22782 1237 282 aa, chain + ## HITS:1 COG:CAC2708 KEGG:ns NR:ns ## COG: CAC2708 COG1250 # Protein_GI_number: 15895965 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Clostridium acetobutylicum # 2 281 3 282 282 333 60.0 3e-91 MKIVVLGNGTMGAGIVQTMAQKGLAVTMKGRSNESLDRAMQRMNKGLNRLVEKGKMTADD LKQIIGRITVTTDYADIAQADLVIEAISEEMEVKKEILREIDGLVQPSAIFATNTSSLSI TELASVTKRPEQVIGMHFFNPVPVMKLVEVISGQCTSEQTLQTTLTLCEQLGKTAVRVSE APGFVVNRILIPMINEAIGEYADGVATVEEIDTAMQLGANHPMGPLALGDFIGLDVCLAI MEVLNNEYADPKYRPHPLLRKMVRAGQLGRKSGKGFYDYSKK >gi|228309057|gb|ACLR01000013.1| GENE 24 23106 - 23393 170 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIVGHPKWTYDRERTSMALSRKSTNCSLEILETPARNGKILRNFEIFLPKFHFILPNFY FPVPWGIFVCSVKLLDFLGRNRNQRRCRHRCKVSL >gi|228309057|gb|ACLR01000013.1| GENE 25 23574 - 26411 3533 945 aa, chain + ## HITS:1 COG:BMEI0878 KEGG:ns NR:ns ## COG: BMEI0878 COG0178 # Protein_GI_number: 17987161 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Brucella melitensis # 9 943 7 965 974 744 43.0 0 MKKSPLNDIIIRGCRVNNLKGIDLDIPRGELVVITGVSGSGKSSLAFDTLYAEGQRRYVD SLSSYARQFLMRMKKPECDQIKNLPPAVAIEQRVVSRNPRSTVGTSSEIDDYLRVLMARV GKLYSPISGELVKRHTAADVVEAAHQIPTDSKLYILADLYPPEGRRLIEHLMLLQGQGYN RVLIDDTVYRIEDVSNKELREAKQVQLIVDRLTVRTGDDSYESRLGDSVEIALYEGRETC ALRWQDSEGAWSSEGRRNFSARFEADGRTFTEPTPDLFNFNSPAGACTVCGGFGSILGID PERVIPDDSLSLYEGCVDCWRGAKSSEWAKAFIHEAKRFDFPIHTPYAELTQEQRDLLWH GHEGGGWGKGTLYGIDDYFAMLQKDIYKIQNRVRLAHYRGKSECYACHGGRLKEDALLFT YMGKNFHQIGQMSIREALTFFAQELEDPEEAKIAERPLKEIRNRLRTLDSVGLGYLTLDR RSNTLSGGESQRINLATRLGNSLVGSMYILDEPSIGLHDRDTDRLISVIKELRDQGNTVI VVEHDELTIRAADYLIDMGLDAGRLGGEVIYHGKPSDITAETPGYTAAYLTGREEILVPK HRRPVQRKLTMHHVHKNNLKGFDVDIPLFNMTVVTGVSGSGKSTLISDLLVEELQRIINA RPRETQSRMLTGDVDLVEQVLYVDQNSVGRSTRSNPVTYIDAFTPIRELYADQPLAKQMG YKPYFFSFNKEGGRCEVCKGDGVVEVPMQFMTDITLVCDACEGKRFQKNILEVTYHGVNI YDLLEMTVDQAIEFFTKYPADQTTSIIRLLEGLQRVGLGYLQLGQNSSTLSGGENQRLKL AYYLGRDHEPHTLFVFDEPTTGLHFHDISTLLAAFRDLIDQGHSVLIIEHNMEVIKSADY IIDLGPDGGDKGGQLVVAGTPEEVAACPDSITGHYLKEKLTPRKA >gi|228309057|gb|ACLR01000013.1| GENE 26 26418 - 26801 513 127 aa, chain + ## HITS:1 COG:no KEGG:CA2559_04765 NR:ns ## KEGG: CA2559_04765 # Name: not_defined # Def: putative transcriptional regulator protein # Organism: C.atlanticus # Pathway: not_defined # 4 102 7 106 109 65 36.0 6e-10 MDSKKLYYSHREVSEALQESQSTVRYWVETFAVQVRRSSTGRLKYSQDNLRELQLIRHLL RESNLTIDGAKATLRHNPQEAEQRAEAIAQLKAVRDELVELRQLIEQIERYTSASEVRDR LRQEGLL >gi|228309057|gb|ACLR01000013.1| GENE 27 26938 - 29532 3093 864 aa, chain + ## HITS:1 COG:MA0523 KEGG:ns NR:ns ## COG: MA0523 COG0249 # Protein_GI_number: 20089412 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Methanosarcina acetivorans str.C2A # 2 862 9 899 900 602 39.0 1e-171 MMRQYLQFKKKHPDAILLFRVGDFYETFSDDAIEASKILGITLTKRANGAAQHVELAGFP HHALDTYLPKLVRAGKRVAICDQLEDPKLTNKLVKRGITEIVTPGVVTTDNVLQSKQNNF LAAVYPEAKGENRYGLALLDLSTGEFYATECTDQVLAKLTSGYNPKEILIERKHRDHLQR LLQPEGHLSDYDDWIFSESNNRERLLQHFGTLSLKGFGIDTLPLAITAAGAVLHYLDMTK HTEIGHITRIVRIDEQRHVRIDGFTAHSLELTTPMNAGGTTLRQILDQTVTPMGARLLDQ WIAFPLKELQAIQQRQSIVANLVDNPQLRTKLTDQMKEIGDLQRLVGRVAMGRITPREVV RLGLSIALIAPIRQLALDEGEETLTTLCSLLDPCTQLCQQITFQLNPEAPQQIGKGATIA EGFCEELDQLRRLLKSGKQYLDDLLARETEHTGISSLKIGFNNVFGYYLEVRNTYKEQVP EEWIRKQTLVNAERYITQELKEYEEKILGAEDRILALEQELFAKLIGTLQQFANQLLQDA QILAQLDVLASLAAVAEAYDYCRPTLNDGYDLEIVDGRHPVIERTLPAGQPYIPNDVKLS PIDCQIMIITGPNMSGKSALLRQTALIVIMAQMGSFVPATSATIGIVDSVYTRVGASDNI AVGESTFMVEMQEAASILNNLTPRSLILFDELGRGTSTFDGVSIAWAIVEYLHSTTQGRA KTLFATHYHELNELADHLERVQCYNVSAREIDGEMLFLRKLVPGGSAHSFGIQVAKLAGM PTWIVARAGEVLQHLEAYRTESDQAPDSATPSTSQSGGMQMSIFQLDDPVLTAVRTKINE LDIDNLTPLDALKQLDALKQMLNN >gi|228309057|gb|ACLR01000013.1| GENE 28 30012 - 31574 1604 520 aa, chain + ## HITS:1 COG:no KEGG:PG1209 NR:ns ## KEGG: PG1209 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 517 1 513 516 579 54.0 1e-163 MDDSNTFTSEDLSYLAERGISADEAERQLKLLIDGTPYLVIVDSAKLERGIMRLATDEMP YYLDLWHDYLQKPGADVIKFVPASGAASRMFKSLYGLPKEQQISHDELTPDQQTFVDHLE SFAFYEKLSETCLRNNWRTMSKLMESEQYGTIIDNLLDPHGMGYGSRPKGMLLFHDYPNG TKRTPIEEHMVEGALYTQDIHGDVRLHFTVSPEHLEAFRSLVDRRIQSFEDLFGCRYHVT YSIQERSTDTIALDLERGTPFRRADGTLLLRPGGHGTLIGNLGRLDASVVFIKNIDNVTP DHLKSNTVLYKKLLGGILLAVRDRIFGYLQQLKRSKVSKALTEEVLTFLDETLCIQIPHA ELLSEEELIPKLVAKLDRPIRVCGMVRNEGEPGGGPYLVREADGTTSLQILESVQVDKNN PEALEMMREGTHFNPVDLCCYIRDYEGKPFDLHKYVNPQTAFISEKSVEGRPLKALEHPG LWNGAMHDWNTIFVEVPSDTFTPVKTVLDLLRPEHQPLAD >gi|228309057|gb|ACLR01000013.1| GENE 29 31614 - 33404 2227 596 aa, chain + ## HITS:1 COG:NMB1428 KEGG:ns NR:ns ## COG: NMB1428 COG0006 # Protein_GI_number: 15677287 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Neisseria meningitidis MC58 # 7 596 4 596 598 435 40.0 1e-121 MPTNSPINQRIEALRQAMRTHHIDAYIIPSGDAHLSEYTPERWKSRTWISGFTGSAGTAL VTLDKSFMWTDSRYYLQATNELQGSEMTLQRGDDPDTPTIEQYLSAHLSKGAVVGVDGAC YSMAEYAPLAQSLANHGIKLVSQYDLIEEVWSDRPGVPTNTFYLQDVKFSGERTRDRLQR IREAYQSYGAEAVAITMVDELCWSFNIRGNDVSYNPVGIAFGFIDNEHAYLFALPEKTVF ELRQILNGEGVEVRDYDTFYDFLSKLPQDLKVMVDPKRTSQRVREELGERPVITGDSVIS HLKSIKNETEIAGIHRAMHRDGVALTRFFIWLEQALKNGEHVDEYSAGETLQQFRAKQEF YVSDSFGVICGYEAHGAIVHYSATPESAYKLEPKGMLLLDSGGQYIDGTTDITRTIALGP VTDQQRTDFTLVLKGHIAIATARFPKGTRGNQLDILARKALWDRGLSYGHGTGHGVGVFL NVHEGPQNIRTDNNPTPMHLHTFTSNEPGLYRANQHGIRIENLILTVEKEQTEFGTFYGF ETMTLCFLDNTLVEKSLLTDKEIAWYNGYQEHVYQELSPLLTPEEAQWLRNKTLPL >gi|228309057|gb|ACLR01000013.1| GENE 30 33409 - 33972 836 187 aa, chain + ## HITS:1 COG:Cj0229 KEGG:ns NR:ns ## COG: Cj0229 COG0663 # Protein_GI_number: 15791601 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Campylobacter jejuni # 10 176 2 178 182 141 41.0 7e-34 MAYEYPAGSIIPVRGFTPQLGEGIFVAEGARIIGDVVIGEGSSIWFNAVLRGDVSSIRIG KHVNIQDGCTLHTLHGRSVCDLGDYVSLGHNVILHGAKVGAYALIGMGAVVMDNAEVGEG AIVAAGAVVLANTIIPPYTMYAGTPAKYIKDVPPEQSQELNKRIAHDYGMYADWFMNPEK YSEGSHE >gi|228309057|gb|ACLR01000013.1| GENE 31 34003 - 34668 821 221 aa, chain + ## HITS:1 COG:lin2886 KEGG:ns NR:ns ## COG: lin2886 COG0176 # Protein_GI_number: 16801946 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Listeria innocua # 1 218 1 214 214 232 53.0 3e-61 MKFFIDTANLEDIRTAEALGVLDGVTTNPSLMAKEGIAGDAACREHYLKICNIVDGDVSA EVLSTTYDKMLPEARELAALHKNIVVKVPCTQDGIKTICQLTKEGIRTNCTLIFNLGQAV LAAKAGATYVSPFVGRLDDISSDGVSLIADIVETFETYGFNTQVLAASIRHTQHIIDCMR VGADVATCPLKAILGLLKHPLTDSGLAAFIADQERVAKQGK >gi|228309057|gb|ACLR01000013.1| GENE 32 34975 - 35148 62 57 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHFDALRGSWHHTLEEIANVSVENRNPPPRNEKILRNFDFFLPNFHFILPNFYFGPR >gi|228309057|gb|ACLR01000013.1| GENE 33 35570 - 37237 1807 555 aa, chain - ## HITS:1 COG:no KEGG:PGN_0294 NR:ns ## KEGG: PGN_0294 # Name: ragB # Def: receptor antigen B # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 15 555 14 501 503 235 32.0 4e-60 MKQHIKTLGLLLVSLLALTACKVEFIPEGNEQQSAFKTMQDVKWTREAMFETLRGAESPA NLFVGDYQSDLFNVVNFRDNGAYGKFYDWDEHLLGDAEEIAAYYGSYASLIKDANYFIMR AEEFTANEELMKGLSKEDLAAIKVYVAEARTLRALGHYRLMLRFSKRYNDANDGGDLGIV MMKKFDPLFKSTPKARSTQKEVYTWCLNELKEAANDLPPKTAYNDKKMGKIPCYLVDDYA YAVSARILLEMHRYADAIEMVEKFIDNYPLATSAVADKGNDHDPHAFENIWKYETSTEIM AMTYANKKVGRVRGILNGLRYIPKALKDGSDAELAVPAWLPTQYLIDLYTKAIDTKAAPG DKDYRFQHWFDNGTKKAHKVDVFVYDTAPLEKLGFGYYVYKFSGNPDLDQNSEKHLYSYA HTTHLFDIAEAHLIKAEAQAWSGDVAGAKATLQKLRKSRGLGDELKASNQDEIKQAVMNE RTREMLGMGTRMNDLKRWGLGIDRQDKDAQQQLMAKPGALHENNTDLKRPATDKMFIWEF PLQDRFANKELVRNW >gi|228309057|gb|ACLR01000013.1| GENE 34 37277 - 40351 3443 1024 aa, chain - ## HITS:1 COG:no KEGG:PG0185 NR:ns ## KEGG: PG0185 # Name: ragA # Def: RagA protein # Organism: P.gingivalis # Pathway: not_defined # 1 1024 1 1017 1017 972 50.0 0 MKRLALFFLMLTASIGWAVAQNRTITGTVTSGEGKEPVMFANVVVEGNTSIGTTTDVDGK FTLSVPASAKKLTFSYVGLKTVTLPITKVMNVVMTADSQVLDQVVVVGYGSGQKLSTISG SMARVSGEQIAEKPVANVMDALQGKVAGMSVLTTSGDPNAVAKVQIHGTGSLTAGSAPLY IVDGMQTDLGTVMAMNSNDIESLTTLMDASSTSIYGARAANGVIVITTKKGKRSEEGFGH ITVNAQYGISQFINRKPYDNMMTGDELLQYQASHGYLKTKNKNQLLMKLNELATKASSET EAWPFNPLENNDVKNYNADNYNFDWLKFFMGRNAPTYNADISFSGGSNRTQYYISMGTFS QEGLTRGRNSFTRYNGRISVDSRVKEWLKVGANIFGAYTQQYASSFEGGAYVNEGPYGAL SQPRYLSPYDKNGELRRYWYLVQLGKSTVDRVIKDKYIRNLSDGYQANIGGYAELTPIKG LVIKTQAGLDLSHSFTSKSFLPGAYWETDQRGSRSERRSLSNLFTWTNTAEYRTTFADKH KLTFLLGQEWVQSRADIIAAYANGFEHRSFMLLGNGSTQPEDLILPDQAKSGYNYLSFFG RVNYSFDNYLHLDLSLRSDASSRFGANNQTALFYSVGATYDLYRAHLEHIKWLNTLRLRA SWGTTGNSSIPTLAFYPHLGRVNYSGDFGLYAAAIGNPDLGWERQSNLNIGVDFDAFDNR LHTVANVYHRITDNMLMQVPLPYISGFASRYENVGSMTNTGIDLTASYDIVRTRDWNVYV SAVLNYNHERISKIFYGMDEYKMPSYSLVYKVGEAEQFLMAEYAGVNPKTGKQRWYVPDE NGNISPDRITEEYVAEKLLRASGKKLRAPFNGGFSMGASWKGLALDIDWSFNVGKWVMNN DRYFTENLSFDNLSDNKSRKVLEAWTLKNRNTDVPKFGEKVAFDSRFLENASFLRLKSAR LSYALPSEWFKKVGLITGVRVYVTGRNLLTITKFTGFDPEAVLNMAMNSYPNTRQYVGGI QITF >gi|228309057|gb|ACLR01000013.1| GENE 35 40906 - 43797 2790 963 aa, chain - ## HITS:1 COG:no KEGG:PG0553 NR:ns ## KEGG: PG0553 # Name: not_defined # Def: extracellular protease, putative # Organism: P.gingivalis # Pathway: not_defined # 18 963 17 939 940 513 34.0 1e-143 MTVHRLSQVCRLLAVGVILLCSSLITFGQQSFGGTPLMLNEGSLRSLTAVRAVSLDFNPA DFLSQDSWSETVQTKPLSVGRVIKHSANFAEDAEQVGTVAGRKIYRLQIELEGTPVGCNL YYEDFYIPEGGKLYIYSPEGQQVLGAYTHATHPKHGAFATEPISGNTLILDYEAPATGEM PSIQVQGVGYFYRPALMADAGAKKHIGLEDGSDPGLGKYCQINANCPEGDPYQAQKASSV AMLMVDGDALGMCSGNLVNNVAGDFKPYVMTAAHCASATETFGIPDMALNQWIFAFHYEK PRCSSGDYATLQEKSVVGAEMRSFIPVAGYSDGLLLEIKQDIPLDYRVYYSGWDATPTTW QVGASIHHPAGDAAKISIFDGDVKLGRWNFDEGGVDDHFSLKFRKGNTEGGSSGSPLFNG AGDQVGTLTGGVISICSMDADYGRLNSHFDKYKSKGETWYMAKWLDPKNTGTMKVKGTWR EDYQPLAVVPSIIAKIEPTDASKVKVSWKPVPQHPQGYAVKYNLYRNGDLLTSTSETAYE DAVTGDMKRKGRVSYSVEAVYTIEEGKEEATPLAYYNLYTGQLASRAQLKVTAAKTGAKL KWQMPYNAQVVTKIKNRDKVYPLVAASGVDKILAAYKMPALDGIYMYDSYRLGQSPFNGQ KLYIHQINFIPSQDTPYNPDGTIDEKNNISFFVRQKKDDTRIQYFPLDIPKGTADKAFLD KQLYSFQLSMPVEITDAHLLDVGFSFDPSNTKASICLDANSTDENIAYDGCKLALAYRKG KKYPITFNVWQFPYSKKRMAYQAVELVISNNPEKQDGITSTYYTYGALPVPFPEIKGYNI YRNGKLVKELKPDIFLYEDADGKTSDDYYVEVVYDYPNELRPNEPVSVATSEVSLYPAHF TTQLQLTDATDVQTVELYNMQGLQVAAFAGAELMAMDVSALPAGHYIATIRTAEGVQTQK LVK >gi|228309057|gb|ACLR01000013.1| GENE 36 43946 - 44134 95 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNFPARNEKILRNFEIFLPKFHFILPNFYFGPPWRILFSSVGDLDFPRSFCFPRSFFFGE RG >gi|228309057|gb|ACLR01000013.1| GENE 37 44427 - 45266 896 279 aa, chain + ## HITS:1 COG:CAC2132 KEGG:ns NR:ns ## COG: CAC2132 COG0275 # Protein_GI_number: 15895401 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Clostridium acetobutylicum # 1 274 30 308 312 189 41.0 5e-48 MGGGGHSRALLERLSPEGRCIGLDQDPDAMANAPQDSRYHFVATNFRYLGQWLDYWGLAG EVDGILADLGVSSHHFDSEERGFSFRYEEAMPDMRMNSRSGVTARDLLLSYSEEQLADIL YYYGELHDARRIAALLVSHRAVGYPTIASLMEVLAPVLPKGGPQLRNKLSRIFQALRIEV NDELGALRQLLSDSVRLLKPGGRIAIISYHSLEDRMVKEFFRLGSFEQPSEALAGMPLSK PAPLRVVTKKAITPSADEIADNNRARSAKLRVAELREDI >gi|228309057|gb|ACLR01000013.1| GENE 38 45279 - 45968 506 229 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469398|ref|ZP_04054412.1| ## NR: gi|228469398|ref|ZP_04054412.1| hypothetical protein PORUE0001_1486 [Porphyromonas uenonis 60-3] # 1 229 1 229 229 362 100.0 1e-98 MVKIDESYFDNNLEEELQEPAPVATDESVTGSHPRPLLGDLLDEEVSPEVVEADAPSDTA PAAMDPADDEETIEVTDEHASLTEAENTEELDAAEGLEDSEELEDEELSDESDQPEPSAR KRSSHGLWYWLGGDMLEQPSFRKYIPAFIAILLMGLIHVTSNYQIIAKRRQIDKLETRVK DLTYKHMESVSELTRRSIGGNFEQQLQAMGSDLEASSQQSIILYRDAKK >gi|228309057|gb|ACLR01000013.1| GENE 39 45999 - 48239 2211 746 aa, chain + ## HITS:1 COG:BH2573 KEGG:ns NR:ns ## COG: BH2573 COG0768 # Protein_GI_number: 15615136 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Bacillus halodurans # 165 745 135 710 723 171 28.0 5e-42 MSKHSPIIARYRALGFLAILMTLWIFIKAMGIIFVDGPTWRRIAQSFHQPDTVTISPLRG NIISSDGHIVAISKPAYKLYIDFGAEAIQQMEPDSLYKQLDSLAYQMSLWQKGELATYPA LRKRLREGYRKAQHKQPGYRYVSIYPYEVSHVEYQRLKQSYPLMMTVERKGRLVRRSGPL RNGLTHEERALRDRPYGELARRTIGSVYKEVKGDLTQGEYGLEQSFDTLLRGEPGLAVRQ YLAGSTRQNTLQPPRDGYNVYTTLDMNLQQIVHRALYEQMTQFEADYGGAILMEVETGRI LALANLTKGGESYYEGVNYAVSALNEPGSTMKTPFMMAALDDGICTPSDTIDTGNGVFKY GGYNIRDHNANRGGYGRISVAQGLWYSSNIVMAKIAIKGYVEHPDGIYQHLRNYGLLERL DVGLEGVATPTIIRPEDKSYGNSTIPGISRGYGISVPAINTLNFYNGVANGGRIMRPYLV DRVEDAEGNVIQEFQPQVLHENICKPATLDSIRSMLDNVVLQGTAKGPVRSDLISISGKT GTALMSNHGGAGYRASGEVYMTSFCGYFPSDHPKYSCIIFVVNPHGPGRASGGMVAGGGV KRIAEEIYTLSNPILLDTITPYPASERLKHLDLAGGEKKRVESFVKTYKIPEVRPEGGGK IASDQLVVPQYGRGGLELQPLSRYAKGVMPRLVGLAPSEAIYQISLQGLEVQLVGYGRVI AQSIPVGTPIHPGQKVILHLGNNHRQ >gi|228309057|gb|ACLR01000013.1| GENE 40 48264 - 49763 1396 499 aa, chain + ## HITS:1 COG:BS_murE KEGG:ns NR:ns ## COG: BS_murE COG0769 # Protein_GI_number: 16078582 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Bacillus subtilis # 33 489 23 480 494 338 40.0 2e-92 MNLKPLNNYIVALTEEHLLSQAHTGAVSTELCQVTSIEQDSRRASEGCIFVALRGVHVDG ADYIPKALAAGCRIIVTEHPRPESLSDEVAWLTVTDTAKAIAVLASVYYDRPERQLTIVG VTGTNGKTTTATLCYQLWNWLGMRAALFSTVCIRIGDEEYPATHTTPDALELHRVMRDMV DAGCRYLFMEVSSHALVQQRVYGLPFALALFTNLTRDHLDYHGTMQAYIAAKKLLFDNLS PDAYALVNADDRNGSVMVQNCAAHLHTYAMRSHADYMSQLLGQYVDGSTLLLDNEEVEIK LVGSYNAYNVTAVYGVARLLLPDLDKSLILRGISSLEHVNGRFDLLASPRGYHVVVDYAH TPDALENLLKTVSELNASQVYVVVGAGGDRDMGKRPEMGRIAYNMCNCLYLTSDNPRSED PQTIIDQMLEGIPQVERDQVYTNVSRRQAITDACAAAQRGDLVVIAGKGHETYQEIKGIK HHFDDKEVAQEIFAKEKLA >gi|228309057|gb|ACLR01000013.1| GENE 41 49829 - 51088 1830 419 aa, chain + ## HITS:1 COG:YPO0552 KEGG:ns NR:ns ## COG: YPO0552 COG0472 # Protein_GI_number: 16120880 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Yersinia pestis # 16 419 15 360 360 234 35.0 2e-61 MLYHLYDWLQANNVPGWRLAQYVTFRAGISFILALIISTIIGRRIIHWLHRMQIGEVVRT LGLEGEAMKKGTPTMGGIIIIIAIIVPTLLFARLNNVYVQLMVFTTLTMGALGFIDDYIK VFKKNKAGLHGRYKIIGQVLLGVVVALTFYLSPDIIIRENQEVTHNGRIEQVTFSSQESK NTQTTIPFVKNNNFDYLSLIPASTPHRELIGWIVFSIIIILIVTFISNCVNLTDGLDGLA AGTAAPAGVALAVLAYVSSHIALAQYFSIMFIPGAEELVIFGAAFVGATFGFLWYNAYPA QVFMGDTGSLAIGSIIAVMAVLIRKELLLPILCFLFIIEGLSSLMQQAYFKITKRRTGTG RRIFKMTPLHHHFQKAGNSGIDALIQRPLAPIREAKITVRFWLIAILLAVLTVITLKMR >gi|228309057|gb|ACLR01000013.1| GENE 42 51117 - 52502 1264 461 aa, chain + ## HITS:1 COG:BS_murD KEGG:ns NR:ns ## COG: BS_murD COG0771 # Protein_GI_number: 16078584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus subtilis # 1 443 7 443 451 231 34.0 2e-60 MQRNEYIILGAGESGVGAAILAQKQGLLVFVSDSGQIKPQYKAELEQYSIPYEEGGHTLA RILSAKEVIKSPGIPDSAPLIRQLAEQQTPIISEIEFAYRYAGDSMMIAITGSNGKTTTT NWLYHTLHNAGLDVSMAGNVGTSLARQVALAPHAYYVIELSSFQLDHMYQFRAHIAILLN ITPDHLDRYDHKMELYARAKMRITQNQQPTDYFISWIEDDWTQRLLKEPGMGAGRRIFFS TEGSSDDAVVASSHDGQLCFALQEPVLEMPESALALSGKHNVQNALAVGCAAQALGIKPE VIRALLETFTNVPHRLEYIASIDGVDYINDSKATNINSTWYALESMRKPTILILGGTDKG NDYNDLMDLVKEKVVGLIYMTTDSAKLHRSFDSVIPRHEEVTSMRDAIAAARQMAQAGDT VLLSPACASFDLFTCYEDRGDQFRAEVLDIAQQQPDTDRSL >gi|228309057|gb|ACLR01000013.1| GENE 43 52518 - 53915 1358 465 aa, chain + ## HITS:1 COG:RSc2845 KEGG:ns NR:ns ## COG: RSc2845 COG0772 # Protein_GI_number: 17547564 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Ralstonia solanacearum # 46 416 30 400 413 108 29.0 3e-23 MIPQDEYNPSQETTPSDIFDLSPRETDQHSKSERASEENSPEATKVEPTPRKPRITGDRS LWFLYFAFLATSLLFIYSATSTLAYRGESLYAPFTGHLKHIIISILAAWFCSRLSNFWLR LGGMGFFVIVLLAVIATPFIGTETNEAKRTLFGLQFSEFYKVGIICLASAVLSAHQLGSL NRRFYIFCGISAIGLVFVAKESLSMGLILITFIVCIGLVQTGLSKSLLMISGVGVGVLTL LLACLVLLPDSVIKKNSSTARWKGRIEDFTSKSDSSKFVIDEDNFQEQHARIAIARSNGT GVFPGNSVERDILPEAYSDFIYAIIIEETGFIGMIWVPLLYILLFFKLSRWATRTQRDWQ RILLLGVGIMYTTQAIIHMCVVTGISPNTGQTLPLISRGGSSLLATSMAIGACIGITRHI REEEYQRQLEQESQAEAATEPVAETTSTVEGSPRPTTSDEANDIA >gi|228309057|gb|ACLR01000013.1| GENE 44 53919 - 54671 890 250 aa, chain - ## HITS:1 COG:CAC0897_2 KEGG:ns NR:ns ## COG: CAC0897_2 COG0169 # Protein_GI_number: 15894184 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Clostridium acetobutylicum # 4 247 6 251 273 134 38.0 2e-31 MQRIYALIGKPVGHSLSADYFNDLFDSQGIDARYILQELDDLSALRPWLESNPAIVGLNV TSPYKVEVCNYLDHIDPEAKYVGAVNTIVVDRTDGRIRLFGYNTDVQGVVETLQPLLTSE QQHALVLGTGGAAQAVAQALKRLGRDCTLVSRDPQAPHILSYSDLTPELIADKWIIINAT PVGMGALTMERPQIPYEAITPEHLCMDLIYNPEETRFLKACREQGATTINGLKMLLVQAR YAWHIWNRQA >gi|228309057|gb|ACLR01000013.1| GENE 45 54693 - 55409 386 238 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 15 236 1 219 221 153 36 3e-36 MPLPMDGKSRYVRQMFDRIAGRYDSMNRLMTGGMDLAWRWQVIEHLANYAPHRVADLACG TGDMILMLSRYLPSVREIVGVDLSEGMLAVAAERLQRAVHSVPAVTLSAENCQELSLASQ SVDAVTCTLGIRNFSDPLQGLREMLRILRPGGRLAILELSEPRGGLLLRGYNIYAKHLIP WIGQLCAHDRSAYSYLPASIKAMPQREAMTALIRRAGFREVHYKEMPLGICVLYTAEA >gi|228309057|gb|ACLR01000013.1| GENE 46 55498 - 56442 1409 314 aa, chain - ## HITS:1 COG:mll2603 KEGG:ns NR:ns ## COG: mll2603 COG0152 # Protein_GI_number: 13472340 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Mesorhizobium loti # 2 312 23 337 337 243 43.0 3e-64 MNQALTHTDLSLPGIQAVFHGKVRDVYFLEGDLIAMVATDRISAFDVVLPEGIPYKGQVL NQIAAEQLDATAHLVPNWKIATPDPMVTVGHRCEPFKVEMIVRGYIAGSAWRAYQAGERT ICGIQLPEGLKENERLPHPIITPTTKADEGHDENISREEIIASGLISEEDYKVIEQYTRT LFEEGTRIARERGLILVDTKYEFGKKDGKVILIDEIHTPDSSRYFYLEGYEERQAKGEPQ RQLSKEFVRQWLIEQGFQGKAGQKMPAITPEYAASVSDRYIELYEHITGKTFVKEQTQDV AKRIEDNLLAFLKK >gi|228309057|gb|ACLR01000013.1| GENE 47 56540 - 57547 1004 335 aa, chain - ## HITS:1 COG:PA3981 KEGG:ns NR:ns ## COG: PA3981 COG1702 # Protein_GI_number: 15599176 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Pseudomonas aeruginosa # 6 324 10 332 340 261 47.0 1e-69 MTERLYILEEIDPAVLYGPNREYLLLLRNLYPKLRIVAHDRIIKILGDTTDIQLLTALLD KLVQHVLRYNLLTEQTIRKLATGEELPEVKVAPNHLLYGARGRSIGYRGTHQREMVEAIA DHDMLFAIGPAGTGKTYIAIALAVKALKEKQVRRIILSRPAVEAGEKLGFLPGELKDKLD PYLQPLYDALEEMIPTQRLRTYMESDVIQIAPLAYMRGRTLNDAVVILDEAQNTTHHQMK MFLTRLGRNSKMIITGDLSQVDLPRGVTSGLRIAERILGDVEQIPFVYFDAQDIVRHPIV QLVVDAYDRNEHQALQGGRPAQETRQDQDIDLDKD >gi|228309057|gb|ACLR01000013.1| GENE 48 57567 - 57959 585 130 aa, chain - ## HITS:1 COG:MT0784 KEGG:ns NR:ns ## COG: MT0784 COG0537 # Protein_GI_number: 15840174 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Mycobacterium tuberculosis CDC1551 # 3 127 2 130 133 87 34.0 5e-18 MASIFSRIIAGEIPSYRIAEDEEHYAFLDINPYQLGHTLVVPKREVDYYYDLTDEELARL MAFSKRVARAIQETTHCRKVATLVLGLEVPHAHVHLIPINSEGDVAHGPLATKPTDEEMA RIASEIAAHI >gi|228309057|gb|ACLR01000013.1| GENE 49 58007 - 58477 782 156 aa, chain - ## HITS:1 COG:SMc01218 KEGG:ns NR:ns ## COG: SMc01218 COG0782 # Protein_GI_number: 15965326 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Sinorhizobium meliloti # 6 154 7 155 158 118 43.0 3e-27 MGYYYMTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLED KIAMLKAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKIS VNTPIAKGLLGKKVGDVAEIQVPAGTLVFEILEITR >gi|228309057|gb|ACLR01000013.1| GENE 50 58778 - 58996 191 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSFTRGGWRKSKDSSVEIFDYPARNGKILRNFEIFLPKFHFILPNFYFPVPWRIFVCTLE ILDFLGREEIRG >gi|228309057|gb|ACLR01000013.1| GENE 51 59725 - 60240 452 171 aa, chain + ## HITS:1 COG:no KEGG:PGN_0487 NR:ns ## KEGG: PGN_0487 # Name: not_defined # Def: FtsK/SpoIIIE family cell division protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 20 165 30 164 861 65 30.0 9e-10 MARRSHHRLPYYYLMATSKDKSTKKRSTQSRKRTNASGRKDATPSRSVGSRMRSWAQDLQ NNVADKRYGELISFILGLILLAFVVYVLVACVSYLLVGARDQSIVTALTPWEALTQTLPE GIDGSVAEIQNITRVHGAYLAHWLMDGFLGFGSWFLLHLKFRRGLATDAHL >gi|228309057|gb|ACLR01000013.1| GENE 52 60161 - 62344 2010 727 aa, chain + ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 65 718 141 781 787 385 37.0 1e-106 MASSASVVGSYSILSFVGALRLMRISKRGSIIKITVYAILLSLWTALAGAAIQDLLGMPT FFRWGGAYGTLWLGNLLPAIGWLGVALILLVSIIILIVVIRYEYLQWMRRAIGLGWVKRP NRHRKAEDPLESAEGEEEASDEEPTDTDEEVVPDDMDGEPDTTEDEDEEAPLPAPSVLAA QSAPRTTSQARREPVSTPAEESLEGGVTVTVAQGDADSQVASVMPQSDLRRGGYQMPSPD LLADVDQTSQTVDRAEIKEIEQLIVEKLSDLGIALEPVEVTIGPTVTLYEFKLDPKVKVN RIRSLEDDIAMKVESIGGIRIIAPMPGRGTIGIEVPNRNPRTVGMKALITSQKFITTDQK LPIAIGRTITNDVYLFDLSKMPHLLIAGATGQGKSVGLNALITSLLYNKRPEELKLILID PKMLEFSIYESIGRHFLTKLEDEEKYIITDTTKALPVLESLCVDMDARYELLARAKVRNI SEYNKLFRQGHLREEDGYVFLPYLVLIVDEFADLIMTTGRAIEKPIARLAQKARAAGIHI VLATQRPSTDVITGLIKANFPARIAFKVSSQVDSRTILDTTSAKDLIGRGDMLINDGKEM RRIQCAFIDTPETERIVDHISHQPYPTEPYLLPEPPATEGAAGGAGLGGGGATERDPLFE EVARHVVQMQQGSTSNIQRRFNIGYNRAGRVMDQLYECGIVSAQDGSKPRQVLISDEETL NRLLDTL >gi|228309057|gb|ACLR01000013.1| GENE 53 62363 - 63052 608 229 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469374|ref|ZP_04054388.1| ## NR: gi|228469374|ref|ZP_04054388.1| hypothetical protein PORUE0001_1501 [Porphyromonas uenonis 60-3] # 18 229 1 212 212 397 100.0 1e-109 MRSNLSLSYLRHSAPLTMRLFGALLALFVCSTFATAPLQGQRKAVFDLNKALQQFEQQVN KGVAITFALNSPGAPSQEGYTWLQGRRFMLSMPGMEAAFDGTTLRIINQKERTYTLMTPS EQDLTAMNPLAYIQKASQRYRITERKSPRGTVIYRFVAKSGSGPLAGVKYYEVTFDQQSQ APKKVDLYFDLGEQVSYTIRKMQAKEHVTSQSFTFAPQEYKSLEVVDLR >gi|228309057|gb|ACLR01000013.1| GENE 54 63079 - 63426 644 115 aa, chain + ## HITS:1 COG:lin2014 KEGG:ns NR:ns ## COG: lin2014 COG0853 # Protein_GI_number: 16801080 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Listeria innocua # 1 109 1 109 127 135 59.0 2e-32 MYIQVLKSKIHRVRVTQANLNYVGSITIDRTLMEAVGILPGERVQVVDCNNGNRLDTYVI AGEPDSGVICLNGPAARLVQPDDIVIIMSYALMDYDEARTFQPKIIFPDSDTNRL >gi|228309057|gb|ACLR01000013.1| GENE 55 63448 - 64788 1844 446 aa, chain + ## HITS:1 COG:SA1080 KEGG:ns NR:ns ## COG: SA1080 COG0541 # Protein_GI_number: 15926820 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Staphylococcus aureus N315 # 2 442 3 446 455 431 52.0 1e-120 MFENLSERLERSFKILKGQGRITEINVAETLKDVRRALLDADVNYNVARDFTDQVKEKAL GQNVLTAVNPGQMMVKIVHDELATLMGSEAVSVNLKGSPAIILMSGLQGSGKTTFSGKLA NMLQKQEQRKPLLVACDVYRPAAIQQLHVLGEQIGVPVYSEPESKDPVQIARNAIAHAQQ EGLDTVIIDTAGRLAVDEEMMNEISSIKEAIRPDETLFVVDSMTGQDAVNTAAEFDKRLD FDGVILTKLDGDSRGGAALSIRSVVNKPIKFVGTGEKMEALQVFHPSRMADRILGMGDIV SLVERAQQQYDEEEAKRLEAKIAKNQFDFNDFLAQIAQIKKMGNLKDLVSMIPGVGKMVK DLDISNDAFKGIEAIIHSMTPEERAKPSILDGSRRKRIADGSGTSVAEVNRLIQQFDQVS KVMRKMQGGGLGRMQAKMQKKNKKRR Prediction of potential genes in microbial genomes Time: Fri May 27 08:58:02 2011 Seq name: gi|228309053|gb|ACLR01000014.1| Porphyromonas uenonis 60-3 deg1118640599508, whole genome shotgun sequence Length of sequence - 651 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 650 713 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228309053|gb|ACLR01000014.1| GENE 1 2 - 650 713 216 aa, chain + ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 216 53 293 341 298 58.0 1e-79 IPYGLEVTFDKTTHLIFPAPIRYVDLGSANIVAAKAESAENVLRVKASVKDFETETNMSV ICTDGSFFAFNVKYAKEPEKLSLEMVDFLHAGEGNLPSNKADIYFKELGNETPTLVRLLM STIHKQDKRLVKHISAKQFGMQFGLKAIYAHNGLLYFHTSIRNKTNMRYQIDYVTFKVVD KAVTTQTAIQETILQPLRAYNDLAVVAPKSELRTIY Prediction of potential genes in microbial genomes Time: Fri May 27 08:58:06 2011 Seq name: gi|228309050|gb|ACLR01000015.1| Porphyromonas uenonis 60-3 ctg1118640599640, whole genome shotgun sequence Length of sequence - 1601 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 152 - 1600 1299 ## Sfum_0670 hypothetical protein Predicted protein(s) >gi|228309050|gb|ACLR01000015.1| GENE 1 152 - 1600 1299 482 aa, chain - ## HITS:1 COG:no KEGG:Sfum_0670 NR:ns ## KEGG: Sfum_0670 # Name: not_defined # Def: hypothetical protein # Organism: S.fumaroxidans # Pathway: not_defined # 73 314 725 957 1024 73 29.0 1e-11 VECPRPTKYSVSFAYDETVGTLLFLGKSVQSGASIPLASLTNLSLTYQAKELVGNKVKVT VTNDAPKAVSKEATWTVNADDTYSVETSQEGEGELVVRGAKNLQRVPAGTELTVFATPAD GWELVALTANDVDILKSKTFEVAGNTTVRATFTKKAPTTYAVTLTKEGEGKVAISGADNL GAVVAGTKLTVTATPADGWDLVALTANGADILSSKTFVVYNPTEVRATFTKKAPTTYAVT LTKEGEGKVVITGADNLGAVRAGTKLTVTATPATGWGVKSITANGKDITAEKSFVVTSNT IVKVVFAIKTYPVTLTKEGDGRAFILETDNLGAVALGSKLTVIAEPYPGWDVKSITANGK DITTDKTFVVNGATDVNVVFYKVLESRVVVRYDPTEIAEMSLNDLPPLMTSDGPGLHTIS VRMGDDVKLSIKAKDGYRITFVASDPSGLLRPTRRTSSEAEYLINTSKHQEVEVLVHCTR QS Prediction of potential genes in microbial genomes Time: Fri May 27 08:58:12 2011 Seq name: gi|228309046|gb|ACLR01000016.1| Porphyromonas uenonis 60-3 deg1118640599636, whole genome shotgun sequence Length of sequence - 538 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 73 - 276 278 ## gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 2 1 Op 2 . - CDS 248 - 538 258 ## PGN_0597 putative conserved protein found in conjugate transposon TraK Predicted protein(s) >gi|228309046|gb|ACLR01000016.1| GENE 1 73 - 276 278 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469432|ref|ZP_04054443.1| ## NR: gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 [Porphyromonas uenonis 60-3] # 1 67 1 67 67 126 100.0 5e-28 MKQDVPPLDSVGTSSTQNKVGWVKKQTDRLKAWCDKLTPEERKRLTFISMGVYLAVFLLV ITISIFK >gi|228309046|gb|ACLR01000016.1| GENE 2 248 - 538 258 96 aa, chain - ## HITS:1 COG:no KEGG:PGN_0597 NR:ns ## KEGG: PGN_0597 # Name: traK # Def: putative conserved protein found in conjugate transposon TraK # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 96 113 207 207 114 57.0 2e-24 DYYTDLQEEKYYNRLISTNTSQVLTVDSISCNFNTYPYEAVVYGTQTIYRKSNVTERSLV TACSLLNTVRSDRNPQGFLITKFRVINNETRRTTPR Prediction of potential genes in microbial genomes Time: Fri May 27 08:58:19 2011 Seq name: gi|228309042|gb|ACLR01000017.1| Porphyromonas uenonis 60-3 deg1118640599687, whole genome shotgun sequence Length of sequence - 540 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 137 - 539 75 ## gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 Predicted protein(s) >gi|228309042|gb|ACLR01000017.1| GENE 1 137 - 539 75 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470428|ref|ZP_04055325.1| ## NR: gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 [Porphyromonas uenonis 60-3] # 1 134 1 134 171 271 100.0 9e-72 MRQLEQAKVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRKRKRPPQTTKGVVNHGFQDHL NTTPKYIATDHCRL Prediction of potential genes in microbial genomes Time: Fri May 27 08:58:25 2011 Seq name: gi|228309039|gb|ACLR01000018.1| Porphyromonas uenonis 60-3 deg1118640599743, whole genome shotgun sequence Length of sequence - 580 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 370 470 ## COG2987 Urocanate hydratase - Prom 443 - 502 3.9 Predicted protein(s) >gi|228309039|gb|ACLR01000018.1| GENE 1 1 - 370 470 123 aa, chain - ## HITS:1 COG:SPy2082 KEGG:ns NR:ns ## COG: SPy2082 COG2987 # Protein_GI_number: 15675840 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Streptococcus pyogenes M1 GAS # 9 123 17 131 676 168 65.0 2e-42 MKRTCKFTLDATLPKYPTFEEGIRRAPDRGYSLTPAQTRVALQNALRYVPKELHAELAPE FLKELKERGKIYAYRYRPEGDLKAGPIDSYKGKCIEGKAFQVMIHNNLSHAVALYPYELV TYG Prediction of potential genes in microbial genomes Time: Fri May 27 08:58:33 2011 Seq name: gi|228309013|gb|ACLR01000019.1| Porphyromonas uenonis 60-3 ctg1118640599753, whole genome shotgun sequence Length of sequence - 28730 bp Number of predicted genes - 27, with homology - 25 Number of transcription units - 11, operones - 9 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 5.5 1 1 Op 1 . + CDS 220 - 963 1177 ## BVU_1239 putative cytochrome b subunit 2 1 Op 2 36/0.000 + CDS 993 - 2936 2741 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 3 1 Op 3 . + CDS 2961 - 3716 1033 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit + Term 3749 - 3793 7.4 4 2 Tu 1 . + CDS 3846 - 4217 422 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 5 3 Op 1 . + CDS 4371 - 6143 1850 ## COG1808 Predicted membrane protein 6 3 Op 2 . + CDS 6186 - 8297 2717 ## PGN_1479 hypothetical protein + Term 8418 - 8451 4.9 7 3 Op 3 . + CDS 8575 - 9252 789 ## COG0336 tRNA-(guanine-N1)-methyltransferase + Term 9274 - 9335 17.1 8 4 Op 1 . - CDS 9327 - 10499 1278 ## PGN_0759 hypothetical protein 9 4 Op 2 . - CDS 10496 - 11485 1207 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 10 4 Op 3 . - CDS 11514 - 11915 389 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 11 4 Op 4 . - CDS 11942 - 12640 146 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 12 4 Op 5 . - CDS 12621 - 13274 576 ## PGN_0762 hypothetical protein + Prom 13816 - 13875 3.8 13 5 Op 1 . + CDS 13916 - 14638 822 ## PG1236 hypothetical protein 14 5 Op 2 . + CDS 14653 - 15258 670 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Term 15154 - 15197 3.1 15 6 Op 1 . - CDS 15379 - 15948 769 ## COG2096 Uncharacterized conserved protein 16 6 Op 2 . - CDS 15981 - 16430 421 ## gi|228469445|ref|ZP_04054453.1| hypothetical protein PORUE0001_1532 - Term 16455 - 16511 15.0 17 7 Op 1 . - CDS 16534 - 16944 585 ## gi|228469457|ref|ZP_04054465.1| conserved hypothetical protein 18 7 Op 2 . - CDS 16991 - 18262 1410 ## COG0738 Fucose permease - Prom 18285 - 18344 2.1 19 8 Op 1 . - CDS 18444 - 20654 197 ## PROTEIN SUPPORTED gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 - Prom 20823 - 20882 3.9 20 8 Op 2 . - CDS 18444 - 20654 1496 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase - Prom 20823 - 20882 3.9 + Prom 20651 - 20710 6.3 21 9 Tu 1 . + CDS 20779 - 21048 164 ## - Term 20997 - 21027 -0.3 22 10 Op 1 . - CDS 21116 - 22285 1218 ## PGN_0881 hypothetical protein 23 10 Op 2 . - CDS 22297 - 23103 724 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 24 10 Op 3 . - CDS 23072 - 23794 888 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 25 10 Op 4 . - CDS 23830 - 26793 3617 ## PG1405 hypothetical protein - Prom 26968 - 27027 5.3 26 11 Op 1 . + CDS 26735 - 26950 64 ## 27 11 Op 2 . + CDS 27004 - 28431 1970 ## BVU_0445 FKBP-type peptidyl-prolyl cis-transisomerase + Term 28483 - 28534 18.4 Predicted protein(s) >gi|228309013|gb|ACLR01000019.1| GENE 1 220 - 963 1177 247 aa, chain + ## HITS:1 COG:no KEGG:BVU_1239 NR:ns ## KEGG: BVU_1239 # Name: not_defined # Def: putative cytochrome b subunit # Organism: B.vulgatus # Pathway: Citrate cycle (TCA cycle) [PATH:bvu00020]; Oxidative phosphorylation [PATH:bvu00190]; Butanoate metabolism [PATH:bvu00650]; Metabolic pathways [PATH:bvu01100]; Biosynthesis of secondary metabolites [PATH:bvu01110] # 1 220 1 219 228 176 46.0 7e-43 MWIFKSSIGRKFIMSLSGLFLIIFLLLHGCINLLAVYDAINVNSEFPTELYNQACHVMGT NILVQIMVPVLALGFIVHIIYALWLTLLNRKARGNDRYAIFTRAKIDWASKNMFALGIIV LGLLVFHLTHFWSKMQLQEWTGGESAEGYQLVVQTFSNVWVSILYLVWLVAIWFHLTHGF WSALQTLGWNNKKWFNRLHVISYIVATLLVLIFAVVVVYFGFIYSGPQSLTEAVPFAEAN VATLPII >gi|228309013|gb|ACLR01000019.1| GENE 2 993 - 2936 2741 647 aa, chain + ## HITS:1 COG:Cgl0367 KEGG:ns NR:ns ## COG: Cgl0367 COG1053 # Protein_GI_number: 19551617 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Corynebacterium glutamicum # 4 646 28 673 673 626 50.0 1e-179 MSEINAKIPAGALAEKWTNYKNHQKLVNPANKRLLDVIVVGTGLAGASAAASLGELGFNV LNFCIQDSPRRAHSIAAQGGINAAKNYQNDGDSVYRLYYDTIKGGDYRAREANVYRLAEV SNEIIDQCVAQGVPFAREYGGLLDNRSFGGAQVSRTFYARGQTGQQLLLGAYSALSRQVH KGSVKLYTRHEMLDLVIIDGRARGIIARNLITGAIERFAAHAVVIATGGYGNAFYLTTNA IASNGSAAWQCYKKGAYFGNPCMAQIHPTCIPEHGDFQSKLTLMSESLRNDGRIWVPKKL EDAKALQAGTKKANDIPEEDRDFYLERRYPAFGNLVPRDVASRAAKERCDAGFGVNNTGL AVFLDFKYAIERMGRDVVADKYGNLFQMYEQITADNPYETPMMIYPAIHYTMGGLWVDYE LQTTIPGLFAIGEANFSDHGANRLGASALMQGLADGYFILPYTIQNYLSDQIQVPHFSVD HKEFDEAEKALKERIQRIASMHGKRSVDSIHKELGHIMWEYVGMARSKEGLQTGIEKIKA LRKVFWSDLHLPGNIDDLNIELEKALRLADFLEIGELMAHDALDREESCGGHFRVEHQTE EGEAKRDDENFAYVSCWEYQGEGQDPVMHKEPLVYEFTERLQRNYKN >gi|228309013|gb|ACLR01000019.1| GENE 3 2961 - 3716 1033 251 aa, chain + ## HITS:1 COG:Cgl0368 KEGG:ns NR:ns ## COG: Cgl0368 COG0479 # Protein_GI_number: 19551618 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Corynebacterium glutamicum # 5 243 1 238 249 225 42.0 7e-59 MDHNININVKVWRQRGPREKGHFETYALKDVPQSASFLEMIDILNEQLIAEDKEPVIYDH DCREGICGMCSMYVNGHPHGPISAITTCQLHMRTFKDGDTITVEPWRSAGFPIIRDLMVD RSAYDKIIQAGGYVSVNTGGVPDANSIPIPKHKADEAMDAASCIGCGACAAACKNGSAML FVSAKVSQLALLPQGRAEAHKRAKAMIAKMDELGFGNCTNTRACEMECPKSVSISHIARL NRQFLAAKLSD >gi|228309013|gb|ACLR01000019.1| GENE 4 3846 - 4217 422 123 aa, chain + ## HITS:1 COG:AGc2712 KEGG:ns NR:ns ## COG: AGc2712 COG0239 # Protein_GI_number: 15888794 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 5 121 4 124 125 75 45.0 3e-14 MLRQLLLVALGGAIGSALRYLTALLLARHYTGSIPLATLAVNLVGCFLIGLLIGLCSDTS HLRLLFITGFCGGFTTFSTFTAESYSMFREGAYGLALLYIAGSVLIGLLALWLGLSLSRL LAS >gi|228309013|gb|ACLR01000019.1| GENE 5 4371 - 6143 1850 590 aa, chain + ## HITS:1 COG:SP1264 KEGG:ns NR:ns ## COG: SP1264 COG1808 # Protein_GI_number: 15901124 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 173 471 19 311 347 237 41.0 5e-62 MPSSENSSPTIDVLKRLVAQQKSARHQHHEPMADELTSCPTTPIYNKVAHDLAPDQHLPN NKVAVTANQPAPSKAATTPSQSKVAVTTDQPTSSKAATAPSQSKVAVTADQPASSKKVSS TPQAASSQQPIANSQQPERHIWWMSAWSWLRKLLDFREDKAGDVATIESLKGDVEFRGTK LWILICAILVASIGLNVNSTAVIIGAMLISPLMGPIIGFGLGFGIADLDLVRKSLRNLAL TTLFSITTATIYFLLTPLDQPGSELLGRTEPSIYDVLIAFFGGAAGLIAGSSKSKGQVLP GVAIATALMPPLCTAGFGIATGNWAFFFGAIYLYIINSVFIAFATFVMVRIMRFPMKTVA SGDIRKRSYRWITIIAVCTLIPSIYLSVRLVRDSYQEQRAKQFVADHFVSSDHQVIRQSL VRGEGGKAPYIDVVLIGKPLSAQAIDSIATLLPSYGLSSLELQVHQGFDNEAPTDYEQLG GVLLRDLYERSERTASEQRAEIDSLRRTLLRYDYYKSLTHDVSDEARAVFTDISQVRLMP SMEFIQGQDSVLHILVTTPSHRISPAERNKLEEWLQKRTKADALQLILTN >gi|228309013|gb|ACLR01000019.1| GENE 6 6186 - 8297 2717 703 aa, chain + ## HITS:1 COG:no KEGG:PGN_1479 NR:ns ## KEGG: PGN_1479 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 21 700 22 709 712 887 62.0 0 MNKLQTLLLTLCALLVCSATARADKGMWVLSELNEQNEARMRELGFNLSLDQLYNLDKPS IARGVVIFGGGCTGITVSNQGLLFTNHHCGYDAIQSQSTVEHDYLRDGFASQSFREELPI PGLSVKYLRAQIDVTARIEQAVAGITDEAQRQEKIEKVSEEIVKEYTKSPFDAVEVTPFY AGNKYYVVIYDEFKDVRLVMTPPSSVGKFGGDTDNWMWPRHTGDFSVFRVYADANNKPAE YSASNKPYRPVYYTKVSLKGYQEQDYAMTIGFPGSTDRYLTSYGVIDRIENENAPRIEAR GVKQEIWKRAMDADQATRIKYASKYAQSANYWKNSIGMNRGLEKLHVVDRKRVEEEAFTQ WVARTGKPYGNILPDLKRAYEEIAPYNRQLNYVIETMLSGSEIVWLGYQAMGAAKSGDKK ELEGLYKDYLPNLDREVLPAMLALLRTKLPADNLPFIYQVIDERFGGDYKAYAEELFANS IIPYEDKMMSVLAMDQNKIKETLANDPVQELVQSVLMYYSSLLDTYLEYNNKIEKGKREL FAAMSEFQPKALRPSDANFTMRMSYGRILGYEPGDGAWYYYFTTERGVFQKQNPNSSEFA VQPEILKLLSDPANFAPYGVGNHLFTCFLSDNDITGGNSGSPVFDKNGNLIGLAFDGNWE AMSGDIEFEPDLQRTISVDIRYVLFMIDKWAKCPRLIQELTFA >gi|228309013|gb|ACLR01000019.1| GENE 7 8575 - 9252 789 225 aa, chain + ## HITS:1 COG:BH2479 KEGG:ns NR:ns ## COG: BH2479 COG0336 # Protein_GI_number: 15615042 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Bacillus halodurans # 1 224 1 225 246 230 48.0 2e-60 MRIDIITVLPEMIEPFVSTSIVGRAQREGFAEVHIHQLRDYATNRWGRIDDYPYGGAAGM LMSIEPIDRIITELRSQRPYDEVIFTAPDAPVLTQAVANELSLMENIIILCGHYKGIDHR IREHLITREISIGDYVLTGGELAAAIIADATIRLIPGVLGDADSALSDSFQDGLLTPPMY TRPAEYKGWRVPEILLSGHEARIAQWEHEQAVARTQALRPDLLEE >gi|228309013|gb|ACLR01000019.1| GENE 8 9327 - 10499 1278 390 aa, chain - ## HITS:1 COG:no KEGG:PGN_0759 NR:ns ## KEGG: PGN_0759 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 12 386 6 373 386 326 46.0 9e-88 MTTHTAPQPYEYDSIRPYLDEEVPAVVAQLANQPELRHVLSALLSEEETTALIQQLKGIH SVDDFKQRISYHLVVQLAKRTTFSVSLSGASRLGGDLPTTFITNHRDIILDSAFLNLVMR ERNYLMPRIAIGDNLFGRPWIEAVVKLNDSFVVRRSLPIRQMLLAAQALSAFIDQSIQQD HKSVWIAQREGRAKDNSDKTQPSVLKMIASSQSNDPLTQLMRVNIAPTTISYEYDPCDIL KACELLWRKHHPEEQYVKGPEEDLINMKTGLLGYKGRVHFAIGKRLNELITPELEAELRA LPKQQLYPRLAELIDTELHSNYRFYPINYIAYDLLHPHKAHPKELYSEADKEKALRYIEE QIAKAPTDAYSADELRTQLLQMYAQPLCNA >gi|228309013|gb|ACLR01000019.1| GENE 9 10496 - 11485 1207 329 aa, chain - ## HITS:1 COG:MT3059 KEGG:ns NR:ns ## COG: MT3059 COG1181 # Protein_GI_number: 15842537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Mycobacterium tuberculosis CDC1551 # 11 329 18 367 373 166 33.0 6e-41 MDKPNIAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTI DRALVARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEAC NAYLAHHGLRIARSQRLHNQTKELSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWD QLATAVVDAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEVVAHDTFFDYDAKYY GKSDEITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFIIEADGIPTLLEVNTTPGMT EASFIPQQVRAAGLQLSDLITRIIKSKLS >gi|228309013|gb|ACLR01000019.1| GENE 10 11514 - 11915 389 133 aa, chain - ## HITS:1 COG:L25787 KEGG:ns NR:ns ## COG: L25787 COG0564 # Protein_GI_number: 15672980 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Lactococcus lactis # 11 126 202 301 301 103 50.0 8e-23 MTVYPPTSEIGKPAVTHYTELERLGFVTLIACELETGRTHQIRAHMKSIDHPLFGDERYG GDQILWGQRTSSYQQFVNNCLKICPRQALHAETLAFDHPTTGERMHFSAPLPDDMSQLIE KWRRYVAPLELSN >gi|228309013|gb|ACLR01000019.1| GENE 11 11942 - 12640 146 232 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 67 218 27 166 285 60 33 1e-18 MMSPGCNPDKEPLPLDEQELEEDLIATDEEDQWVAGSHGEELYEHYRVRVDPGQTPLRID RFLVDRMPHTSRHRIQLAAKAGLIWVDGEPVKSNYKVKPLETITMMLAHPKQDWSITPED IPLDIVYEDDQLLVVNKPAGMVVHPGHGNYSGTLVHALAYYLRNDPLYDPNDASVGLVHR IDKDTSGLLLVAKRTEAKIRLARQFFLKTTGRRYQALVWGKLDQPQGTIRAI >gi|228309013|gb|ACLR01000019.1| GENE 12 12621 - 13274 576 217 aa, chain - ## HITS:1 COG:no KEGG:PGN_0762 NR:ns ## KEGG: PGN_0762 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 6 216 12 217 218 154 41.0 2e-36 MRRPTLLIHIGLMILASVIIVLLALLWMNLFTRHGSSVEIPDIYGLPESEAEQLLDKAHL RYEIIDSVYTTEVPKGAVYDLTPKAGSKVKAGRIIFITLNAYCPRNGIIPSLIDVSERQA RARLISLGFEHITPSYVAGSFDGLVMGVQLPSGQTLAPGTRVPLSTPLILLISVSTRDSI PHGTLQPYDSITGSGGSAIPSDSTSHSLEPDDDESWM >gi|228309013|gb|ACLR01000019.1| GENE 13 13916 - 14638 822 240 aa, chain + ## HITS:1 COG:no KEGG:PG1236 NR:ns ## KEGG: PG1236 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 11 231 10 232 236 231 53.0 1e-59 MNPPTLLNHPFDAQTSLSKLILTHYDLLMVITRFGIPLGFGDKSVDEVCQANGVDTNTLL AVVNILTTQSDTVPEELLQEISAESLITYLQRSHHYFLDYKLPDLRGDLFTAVEEGSPEV AALIHRFYDAYVEEVHKHMGYEDEVLFPYVHRLLKGERDKGYSIDEFESRHDHIEMKITD LKNILIKYYQSMGDYALTNVLHELFTTESDLMWHNHIEDCLFVPLIKQKEEALQASNRHA >gi|228309013|gb|ACLR01000019.1| GENE 14 14653 - 15258 670 201 aa, chain + ## HITS:1 COG:YPO3041 KEGG:ns NR:ns ## COG: YPO3041 COG2197 # Protein_GI_number: 16123218 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Yersinia pestis # 3 190 5 206 209 67 28.0 2e-11 MQHTILIIEPHKLLAYGLQLALRRGFPDSSVQLCVDLLDPDALRQHITFIAPDIIIANPL LTGVQYNPDLLPTGKEATVVAINHNLLPEDLYKGYSFVCLPTVDPQSLIQQIQESEQPEV ELIESDESKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLDIHSP SGLTIYALMNNLISMEEAKGI >gi|228309013|gb|ACLR01000019.1| GENE 15 15379 - 15948 769 189 aa, chain - ## HITS:1 COG:RSc2663 KEGG:ns NR:ns ## COG: RSc2663 COG2096 # Protein_GI_number: 17547382 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 4 182 6 177 185 147 45.0 1e-35 MKKSPVYTRRGDDGTTGLVGGTRISKGHIRLECYGTVDELNSHIGVLLAEDLTEETHDFL LRLQHILFNVAGSLATPPDQEEYLAAMKIDPTDIEKLEHKIDELDATLPRLREFVLPSGG RTAALCHVCRTVCRRAERNIYRLREESRVDDLIVRFVNRLSDYFFVLARTEALRTYGSEV TWNRGYSTL >gi|228309013|gb|ACLR01000019.1| GENE 16 15981 - 16430 421 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469445|ref|ZP_04054453.1| ## NR: gi|228469445|ref|ZP_04054453.1| hypothetical protein PORUE0001_1532 [Porphyromonas uenonis 60-3] # 1 149 1 149 149 281 100.0 1e-74 MATPLQRWWTSLGHGVHSPTAFRLITLILDQRGVAYYPEHRVALHDLDHMLDHRQKQLAL QLLHQWPLTQLVTQYDETLAYDRALILWQDAPLAEMPWDTGSILWHVGRKVPHSFSQRES GMMVDYGAGQLLFLDHKLPCQNFWTRIRH >gi|228309013|gb|ACLR01000019.1| GENE 17 16534 - 16944 585 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469457|ref|ZP_04054465.1| ## NR: gi|228469457|ref|ZP_04054465.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 125 3 127 138 218 100.0 6e-56 MKKFMLIVAAGLALVACNTEKKDATATTEDSTAIVAEAPVVAEPEVFNYATADGKQHFEL TVTGENRETATLKDVEGNVVYDMKNAESADGVKWTSEDGHSFWTKGDTFTFFEGDKQLCE GALVVEAPATEAPAAE >gi|228309013|gb|ACLR01000019.1| GENE 18 16991 - 18262 1410 423 aa, chain - ## HITS:1 COG:BMEII1053 KEGG:ns NR:ns ## COG: BMEII1053 COG0738 # Protein_GI_number: 17989398 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Brucella melitensis # 7 420 16 411 412 150 29.0 6e-36 MPTPSIANKPNYLGPFITMVIMMTVIGFITSINQQFQAPIQSAYLHSAGAWTNSFTTLLI FAFFLSYLVLGPTSARFVERHGYKMTIVRGLLLLAGGILLFILSALLFMHTSLWLTLSET VQLPVSYFIFLLGSFVCGAGITFMQSSVNPYLIACAVPGTSAVQRQNIGGVGNSTMTMLA PLFVSMVIFGGVADLKDVQIQEVVLPMTILMAVVLVLSYVVRRLHVPHIEGTTSGEDAQV SFKTVWRIPRVRLGCIALFCYVGVEVCIGANIILYGKDDLGLSYNTVALYATLYWGAMLV GRFVSSFLSRVTDRKLLWVTTLLSAILILIAVVTNQPYWLIAVGLCHSVMWGAIYSLALK GLGSLATRASGVLLMGLIGGALLPFLQSVLADLLGGYHYTWLLVVGGELYMLYYALLGSR FKE >gi|228309013|gb|ACLR01000019.1| GENE 19 18444 - 20654 197 736 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15672820|ref|NP_266994.1| 30S ribosomal protein S1 [Lactococcus lactis subsp. lactis Il1403] # 627 733 279 377 408 80 38 1e-14 MINPVNKTITLPDGRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKDAKPDVDFMPL QVEYKEKFSAIGRFPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFS SDGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARVDGDFVINPTFEQLERADIDLMV AATLDNIMMVEGEMEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMVKREYPAEEQ DEELRERMQRELYDKIYKVATAGTDKHARGDAFAAIVEEFKAQFTAEELEEKGMIIDRYY HDMEKAAMRRMILDEGKRLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLG TKSDEKLVDDVLNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE DYPYVIRVMSDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNYAI LSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILNKI EEAQPEARPDMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDNYGI VEISSSNKESLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHISEI DWKRFATIEETGLKEGDTIDVKLIEIDPKTGKFSLSHKALLPKPEGYVEPERRPRRERRD DGERRERRPRRERHDD >gi|228309013|gb|ACLR01000019.1| GENE 20 18444 - 20654 1496 736 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 14 700 13 694 714 580 46 1e-165 MINPVNKTITLPDGRTITIETGKLAKQADGAVTVTMGSTVLLAAVTAAKDAKPDVDFMPL QVEYKEKFSAIGRFPGGFTRREGRASDYEILTCRLVDRALRPLFPDDYHAEVYVNIILFS SDGVDMPDALAGLAASAALAVSDIPFGGPISEVRVARVDGDFVINPTFEQLERADIDLMV AATLDNIMMVEGEMEEVQEEEMLEAIKVAHEAIKVQCQAQLELSEAVGKMVKREYPAEEQ DEELRERMQRELYDKIYKVATAGTDKHARGDAFAAIVEEFKAQFTAEELEEKGMIIDRYY HDMEKAAMRRMILDEGKRLDGRRTDEIRPIWIETDCLPGPHGSAIFTRGETQSLSTVTLG TKSDEKLVDDVLNYGKERFLLHYNFPPFSTGEAKASRGISRREIGHGNLAHRALKRMIPE DYPYVIRVMSDILESNGSSSMATVCAGTLALRDAGVQMKKPVSGIAMGLISENKGTNYAI LSDILGDEDHLGDMDFKVTGTRDGITATQMDIKVDGLSYEILAKALAQAKAGRLHILNKI EEAQPEARPDMKPHAPRIETLRIGKEFIGAVIGPGGKIIQGIQEKSGATVNIEEVDNYGI VEISSSNKESLDAALAMVRGIVATPEVGEVYKGTVSSVMPYGCFVQFMPGKDGLLHISEI DWKRFATIEETGLKEGDTIDVKLIEIDPKTGKFSLSHKALLPKPEGYVEPERRPRRERRD DGERRERRPRRERHDD >gi|228309013|gb|ACLR01000019.1| GENE 21 20779 - 21048 164 89 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEPSTALSRESDNSSVEIIDYSPRKRKILRNFEIFLPKFHFILPNFYFGPPWGIFVCSLG ILYFLGRSWDQSRCQSNYKVALQHCVARI >gi|228309013|gb|ACLR01000019.1| GENE 22 21116 - 22285 1218 389 aa, chain - ## HITS:1 COG:no KEGG:PGN_0881 NR:ns ## KEGG: PGN_0881 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 17 389 2 375 375 233 36.0 8e-60 MDSTTPSPAPRKTSSQSSKKPRTLWGMIRGFWHTFVSFGNLLLLLLFAGSLLSRYISPTT IILSAYLGLLFPLLFALVVLQAIYWFIIRAWSRAAINTVMLLLSLPTLLLYAPLRARQTP PIDRENWIKVVSLNANAFQFTKLGAHDQHATTDYLAKSDADIICLQEAWLSSNKSKYMSE RSLRHTLSNYPYYSSAYAVKDHGSRLIVLSKYPILSTRPIDLHSKFNGGAVFTILVGEKK LVLYNLHLESFGFTREEQAHYFQLAQEVNPKGFTQAVGGRFSPAFKRRAQQVEQIYQDIN YQESPYLLVCGDFNDTPISYTHHRLSAGLHDAIATTGRGTNYSYYFKSLIGVRIDHMLYS DQIVARAAHVDRSVNISDHKPIICYFKLK >gi|228309013|gb|ACLR01000019.1| GENE 23 22297 - 23103 724 268 aa, chain - ## HITS:1 COG:MA3859 KEGG:ns NR:ns ## COG: MA3859 COG0705 # Protein_GI_number: 20092655 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Methanosarcina acetivorans str.C2A # 19 220 31 216 226 58 27.0 9e-09 MLQEKRIDTTNRWLLWGITLLLVTLWLVDFIVRQLPSPLPTRWTRGVVDQLYLSCSMEAL WRRPWTIVTYTLLHNSGLHLLLNLLLLWLFGEMQLRHSGWRQFVWSYLGGAVVGGIAFVL CTSLLRAGGVILLGLPLVGASASVIALVGYMVGAAPRAEMPLPLIGSLRVWQVGLFVFLL LLLAYGGYNVGGLIAHLAGVLWGCGLGLYHRRRQRSARQQEKLQDAQTARYQQLLDKVQQ SGYQSLSDEEREQLIEHNNQWLDQSGHN >gi|228309013|gb|ACLR01000019.1| GENE 24 23072 - 23794 888 240 aa, chain - ## HITS:1 COG:XF0649 KEGG:ns NR:ns ## COG: XF0649 COG0705 # Protein_GI_number: 15837251 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Xylella fastidiosa 9a5c # 11 226 8 205 224 153 44.0 2e-37 MHSFDTNRRIQIPPVTLNLLIINVLCYLAQQVLPRVGIDLTGLLGLHYVTAHDFHVWQPI SYMFLHGSFTHLFFNMFALFMFGTTIERTWGAKRFLLFYLVCGLTAALSQELVWGLTTVR EVAGYDVVAFPDGSRMATAFFVNQLLTIGASGAVFGLLLAFGWLYPNAAIYLFFIPIPIK AKYFVIGYGVIELFLGVANIESDVAHFAHLGGMLGGLLLILLWRKQGKLYNASGETYRYY >gi|228309013|gb|ACLR01000019.1| GENE 25 23830 - 26793 3617 987 aa, chain - ## HITS:1 COG:no KEGG:PG1405 NR:ns ## KEGG: PG1405 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 52 987 45 951 951 888 48.0 0 MSSSVIAPRSLVRLLLLLVIGVVVVSCATQVRRTVTPATTPSQTESLDTVVADLSADTTR SLDSLAMPPDSLSVVSDSLAAKADTTLAPTATDTLAKGAETSITETDSVELFKLEAPVTF SAEDSLVMTGRNVMYFFGPSEVKYQRMSIEANYLKIVSDSSEVYAQYVLDSLGQPTARPK FADGDQKFESTTMKYNFKTGQGFITDVTTQQGEGFLTSAQTKRLKDNTMYLKDGRYTTCD LHDHPHFYINLTRAKAKPQDKIVTGPVYLVMADVPLYFIGLPFAFFPFNEKQTSGVIMPS YGIDQTRGLYLTHGGLYLNLNDYWDLTLTGDVYTNGSWAVNAMSNYRKRYKYSGSVQAGY ISTVQGDKDIPSTYSRSQDISLRWTHSQDPKADPLRNFSASVNFSTSSYNHNATQAVYNH QRRAENTKGSSISYRRSFAGIPLSLTGAFNIDQRSRDSTISVTLPNLSLSLSTIYPFKRK NRVGKERWYEKISLSYSGSLRNSITTKENLLLKSNLVKDWRNGMQHSIPISASFDLFNYI KISPSINYTAYWYTSRVEKRWDEAQQRIVDADTTYGFYHLNNFSAALSMSTTLYGFYEPW RKLFGDRVQMIRHRFSPSISLSYAPDFGEPFWGYYREIDYVDTLGQAHNYVYSPYERGIF GYPGRGKMGAINFSFDNNVEMKLRMPTDSTAVEEQFKKISLIDQFGLNFSYNMAADSFRW SNINTNIALRLTKTFVLRLSASFDPYEWDYYTDPQGNVRPYRVDKLRILNGHGIGAFLGT GTSFNYTFTPQTFEKIGKWVSGLFNKKKGATTTDDETPKSPGDDPTAMGGGAGPDRVGPD GSPGGGPRSGYTERDSWDDDGYLKFDVPWSFSFNYSVNVAQDRQKFNTHRREFEYMFTQN LSFRGQLQPTPNWTFSFDANYNFDLKKLTGMTINITRDLHCWSLTASVIPLGAYKSYNLV IGVNASLLRDLKWEQHSLPTYGGSGWY >gi|228309013|gb|ACLR01000019.1| GENE 26 26735 - 26950 64 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSSRSSRTSERGAMTELDMYYNNATKLMMIHQPQAKVLNSGVPRHVLCPSRVTRTFLEC TPRRPCFGQAT >gi|228309013|gb|ACLR01000019.1| GENE 27 27004 - 28431 1970 475 aa, chain + ## HITS:1 COG:no KEGG:BVU_0445 NR:ns ## KEGG: BVU_0445 # Name: not_defined # Def: FKBP-type peptidyl-prolyl cis-transisomerase # Organism: B.vulgatus # Pathway: not_defined # 1 441 1 439 451 174 30.0 1e-41 MNISHELKDDSVVLLNITLSSEDIKEQVADQLKHLRKTAEMPGFRPGKTPASIIEKKYGQ AVRFRVINEMTSEEIRHYLKEQGIHTVGGLIMEQDENTYTPEQTDYKLQISAGLMPQFPE TIDSSVTLPHYTVQANDEEIDQMIQNARENAGERTEVEDVQDKDVLYVSVQELDDKGQHA IEGITLEESYIMPLYVTNEEIRAEILKAHKGDTLTIDLHKAYDNNDVEIASFLQIKQEEV HEHKNPFEIQIKRILRNNPSPIDEKLFKLMLGPTTKVTNEEELRAELKRLQGERNDAMAS DIFTTVVSKYIVEKIQGLTFPDKHLALLLNEKTEEETQEAYDERINKILPYVRYQAMLAS LNKQLGVEVPDELVRKIVREGVMRQIQSAGLGQLLSNDELVESIVNSTIEKNDEQLFSAK EQAKEQALAAKVQELVTLDEQKPLTIKELYEVHADLQKEINKLLGLSDVEPAAEA Prediction of potential genes in microbial genomes Time: Fri May 27 08:59:42 2011 Seq name: gi|228309010|gb|ACLR01000020.1| Porphyromonas uenonis 60-3 deg1118640599526, whole genome shotgun sequence Length of sequence - 534 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 08:59:42 2011 Seq name: gi|228309005|gb|ACLR01000021.1| Porphyromonas uenonis 60-3 deg1118640599691, whole genome shotgun sequence Length of sequence - 602 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 228 183 ## gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 2 2 Tu 1 . + CDS 373 - 601 91 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228309005|gb|ACLR01000021.1| GENE 1 1 - 228 183 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470428|ref|ZP_04055325.1| ## NR: gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 [Porphyromonas uenonis 60-3] # 1 75 5 79 171 146 97.0 5e-34 KQAKVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPRAGVD TLQECTNKYFKGTFK >gi|228309005|gb|ACLR01000021.1| GENE 2 373 - 601 91 76 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 6 76 127 198 294 63 41.0 1e-10 MPAHRSDITYVKCLGGFAYLSLTMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHG FDLKGLIFHSDRGCQY Prediction of potential genes in microbial genomes Time: Fri May 27 08:59:48 2011 Seq name: gi|228309001|gb|ACLR01000022.1| Porphyromonas uenonis 60-3 deg1118640599725, whole genome shotgun sequence Length of sequence - 887 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 65 - 493 464 ## PGN_1736 putative glycogen synthase 2 1 Op 2 . + CDS 472 - 885 355 ## PGN_1736 putative glycogen synthase Predicted protein(s) >gi|228309001|gb|ACLR01000022.1| GENE 1 65 - 493 464 142 aa, chain + ## HITS:1 COG:no KEGG:PGN_1736 NR:ns ## KEGG: PGN_1736 # Name: not_defined # Def: putative glycogen synthase # Organism: P.gingivalis_ATCC33277 # Pathway: Starch and sucrose metabolism [PATH:pgn00500]; Metabolic pathways [PATH:pgn01100] # 6 108 4 106 271 166 71.0 3e-40 MAAKDKKVLYISQEIYPYLPESDLAHVARYLPEHIQNAGNDVRIFMPRYGLVNERRNQLH EVIRLSGINVIVDDYDHPLVIKVASIPSTRIQVYFIDNADLFGRKSLFGPPSEGALVTMR IAASSSSEASWRRSKACTGSPM >gi|228309001|gb|ACLR01000022.1| GENE 2 472 - 885 355 137 aa, chain + ## HITS:1 COG:no KEGG:PGN_1736 NR:ns ## KEGG: PGN_1736 # Name: not_defined # Def: putative glycogen synthase # Organism: P.gingivalis_ATCC33277 # Pathway: Starch and sucrose metabolism [PATH:pgn00500]; Metabolic pathways [PATH:pgn01100] # 1 135 134 267 271 120 46.0 2e-26 MHWIPDVIHCLGWFSALAPVYLKTAYKNDPYFERAKVLFSVDGNEEEGEIGEDLIKKLEF DKITGDLLDPLQGEVTPDALRRMAIHYSDGVILGQESVSPELIEYLRSEPDHKVLEYPGP AVDHAEAYVDFYRSFTE Prediction of potential genes in microbial genomes Time: Fri May 27 08:59:58 2011 Seq name: gi|228308986|gb|ACLR01000023.1| Porphyromonas uenonis 60-3 ctg1118640599619, whole genome shotgun sequence Length of sequence - 22325 bp Number of predicted genes - 13, with homology - 13 Number of transcription units - 8, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 60 - 95 2.1 1 1 Op 1 . - CDS 196 - 1476 974 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 2 1 Op 2 . - CDS 1481 - 2326 753 ## COG0575 CDP-diglyceride synthetase - Term 2384 - 2436 7.0 3 2 Tu 1 . - CDS 2450 - 4561 1186 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 4605 - 4664 2.6 4 3 Op 1 . - CDS 4702 - 5856 1433 ## COG1883 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit 5 3 Op 2 . - CDS 5888 - 6835 933 ## PG1611 hypothetical protein - Prom 6920 - 6979 4.0 + Prom 7285 - 7344 2.6 6 4 Tu 1 . + CDS 7430 - 10519 3516 ## PG1427 thiol protease/hemagglutinin PrtT precursor, putative + Term 10556 - 10610 9.1 + Prom 10554 - 10613 4.4 7 5 Op 1 . + CDS 10831 - 12570 1621 ## COG3291 FOG: PKD repeat 8 5 Op 2 . + CDS 12680 - 15028 1963 ## COG4886 Leucine-rich repeat (LRR) protein + Term 15053 - 15115 12.7 + Prom 15079 - 15138 2.6 9 6 Tu 1 . + CDS 15168 - 18095 3367 ## PGN_1416 probable lysyl endopeptidase precursor + Term 18191 - 18243 15.2 + Prom 18247 - 18306 2.3 10 7 Op 1 . + CDS 18493 - 20424 1439 ## COG1649 Uncharacterized protein conserved in bacteria 11 7 Op 2 . + CDS 20428 - 21543 898 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases 12 7 Op 3 . + CDS 21578 - 21784 161 ## gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 + Term 21793 - 21829 -0.9 - Term 21704 - 21746 7.1 13 8 Tu 1 . - CDS 21763 - 22323 705 ## COG0457 FOG: TPR repeat Predicted protein(s) >gi|228308986|gb|ACLR01000023.1| GENE 1 196 - 1476 974 426 aa, chain - ## HITS:1 COG:MA4450 KEGG:ns NR:ns ## COG: MA4450 COG2244 # Protein_GI_number: 20093236 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Methanosarcina acetivorans str.C2A # 2 381 4 386 494 85 22.0 2e-16 MKVPRPLRSILADSGLLLSVGVGVQLIALLLLPWISRLYAPDTLGDLALILSIATLLSIA VGGRYEQAIVVCQEPLERNHLLRLTLWITALATLLLLALVPAIDPWIGTTRYASLQGKLW LIPPVVCALGLCATLSNYALSLGHFKRIATSKAVQGLGNNGLKVGFGLLAPSVWSLWCAQ IASTLLSLIPLLRPLKLRRQAKTSSSRLQLRLVARKYRAFPLFSLPQAVITTLLGSLLIL FIPLGYTTIEVGLVSMATMLARRPIQLIADSVSQVYFNRLSVAHHAQAPWRPLVRPLLMV TLLVGLPTLLLLWWAMPYLVSWLLAPEYAACTAIIRAMLVYLLVLFFTSIINVIPDIIER QRAHLRVQLLNLLLQVALLVLLIYVLRTPFAETVSTYYLVIALYHVVYGGWLLYLVHRHD QRLQQV >gi|228308986|gb|ACLR01000023.1| GENE 2 1481 - 2326 753 281 aa, chain - ## HITS:1 COG:BS_cdsA KEGG:ns NR:ns ## COG: BS_cdsA COG0575 # Protein_GI_number: 16078717 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Bacillus subtilis # 130 278 117 268 269 116 45.0 5e-26 MSNFTTRLISGTIYVALIVLVLVLSMVWGLWVLLSFFAVAGLIEFNQLTRVNRPYIFRIV LDCAAAVWLLYATAQSGMAITLGLGIYIPYLLYLLYVVCRSTFLPHQDMLRSLGNSLIGQ LYIAVPLALAIRLTLTINSFFPITHYNGLLLLAIFIFIWVNDTGAYLVGSRWGKTPLAPS ISPKKTVEGSIGGLLLALLSAVILRLLLFPELSWLHILLIAAVVAIFGTIGDLFESSLKR QAGVKDSGKLIPGHGGILDRIDSLLLAVPAVYLLLRLLDLY >gi|228308986|gb|ACLR01000023.1| GENE 3 2450 - 4561 1186 703 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 144 675 95 623 636 461 46 1e-129 MNKHIKNPLGAPTPNPQGSDPRRGKRRFNPMWIYLSAVLILLMLFFLPSEQPTNSKEVGW TEFQQLLRKEVATKVEVNQTKGVAVATINPKKVGLVYSEQELQNLEQRGFPFRITQTQYK VKCVPPSVDRFDEFVEKEGIAVEVQYKTESASFWIVLLNWAPLILILVFWIWMFRRMSAG PGGKGGGPGGVFNVGKSKAKLYDKNESHVTFDDVAGLHEAKQELQEIVEFLKNPDKYTKL GGKIPKGALLVGPPGTGKTLFAKAVAGEAHVPFFSISGSDFVEMFVGVGASRVRDLFKQA KEKSPCIIFIDEIDAVGRARSKNAGFSSNDERENTLNQLLTEMDGFDGNSGVIILAATNR VDILDKALLRAGRFDRQIYVDLPDLNDRKEIFLVHMKGLKLGADVDVDQLSRQTPGFSGA DIANVCNEAALIAARHDKQAIEKQDFMDAVDRIIGGLEKKNKIITEDERRSIAIHEAGHA TISWMTEYGNPLVKVTIVPRGKALGAAWYMPEERQITHTQVLLDELCSLLGGRAAEELFL KRISTGAANDLERVTKLAYAMITYYGMSDKLPNINYADLQSDGYTFQKPYSEETAVIIDQ EVSKLIATQYARAKELLTQYAEQHHKLAELLLEREVIYTEDVEAILGKRQWTSRSDEIDA LNEAARAQRQANATPPPYIKKEGDHPTPAPSDEQTDEEPTESE >gi|228308986|gb|ACLR01000023.1| GENE 4 4702 - 5856 1433 384 aa, chain - ## HITS:1 COG:TM0880 KEGG:ns NR:ns ## COG: TM0880 COG1883 # Protein_GI_number: 15643642 # Func_class: C Energy production and conversion # Function: Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit # Organism: Thermotoga maritima # 14 384 20 384 384 340 53.0 4e-93 MNFWNFLVDNIEIFSTYTGFANVTTGHVIMILVGALFIFLGIRFRFEPLLLIPIGFGMLI GNIPFKDAGLQIGIYEEGSVLNILYQGVRQGWYPPLIFLGIGAMTDFSALISNPKLMLIG AAAQFGIFGAYMIALQLGFEPNAAGAIGIIGGADGPTAIFLSSKLAPDLLGAIAVSAYSY MALVPIIQPPFMRLLTTNKERRIRMKAPRKVSRVERILFPIFGLLLTGFLVPSGLPLLGM LFFGNILKESGVCDRLARTAREPLIDIITILLGVTVGASTQATHFLTLDSVKIFMLGALS FIIATCSGVLFVKVMNLFLKEGNKINPLIGNAGVSAVPDSARISQIEGVKYDRTNYLLMH AMGPNVAGVIGSAVAAGVLLGFLS >gi|228308986|gb|ACLR01000023.1| GENE 5 5888 - 6835 933 315 aa, chain - ## HITS:1 COG:no KEGG:PG1611 NR:ns ## KEGG: PG1611 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 13 309 9 302 313 271 48.0 2e-71 MQRFTRTALQRLLLLSTIAILWASYPLSAQSITAARINEVMIDNVDNYIDSYGKRSPWIE IYNSSAGTIDLAGCFLTDDPQDLKKYMIPKGDILTIIKPRQSVVFFADEMPLRGTFHLNF TLTPETPHYLALVSSDGSSIIDEVEIPAAIPADHSYARIDDGVRTVAPAKAWHITQHTTP GSNNVVKDKNEKINRLQEADPNGFVMTVTAMLVVFLGLLILFLAYKLIGIVAMRLENRKQ ALYKAPHSESTTTASTTDDPLVAVAISLALTTELELGGGEAPGQLTIRPRTQTYEPWSDK SQMMRPTVECKRLKA >gi|228308986|gb|ACLR01000023.1| GENE 6 7430 - 10519 3516 1029 aa, chain + ## HITS:1 COG:no KEGG:PG1427 NR:ns ## KEGG: PG1427 # Name: not_defined # Def: thiol protease/hemagglutinin PrtT precursor, putative # Organism: P.gingivalis # Pathway: not_defined # 36 606 33 575 843 263 30.0 2e-68 MKHSLLGRSRILTMTLCLLLCGVVQIFARPLREQEARLLAEQFFQKNSQTQQLRSANLTL VSAPARTSNGYNLQSTAEPARYYYIYNRGEAGGFVIVAGDDRLAPYIGYATTGTFSVEAI PDNLAAFLQTCQQRIDELAGQPGWQTRLAPTLPMAGAPAEVAPLLGGIKWDQAEPWNSKT PVDGEGKHMPVGCVATAYAQVMRYYKWPDKGVGKVEYKEPGVRRRHKVDFSQTTYDWANM PESFADVKTATEAQKEALGTLCYHAGVAIETAYNAQASGSFAPKIVMALRNNFRYDKQVT FKRRVNYTQAEWDKMIRAELAAGRPVVYCGTGTGGGHAFVCDGYNVDGLYHINWGWKGLA DGYFNLNFLSPDQLGIGGGFGGGFSMEQGAVIGIKPDRNGTSKDTEIPLLTTRKFTMHLR AGGSKIQMADANYSVWMSDAPVKNDDGEAEYTYYGLTTFGAVKLGTTDTVYMDEFAKTRI LGGLYDLSSEFQFELDITKYITAGTWDFFLVYQVTLPNGKKVWRPCAMDVREGNNENGKG RHTFTIKKVAPNGWTAREDLTHPFAQLEMVEGSAKATLNGYEKSTISLKLKNTGRGEFFR PLYLELKPEGGKWRSYSEILPAIPDGETQEVTYKAEHCPYAKGKVSLRVAYQTEDMGKMQ YFNLPDATVNPSTVIRPAFVIEPASKTAPMEAERGTGKFSPVRVKYVGTVAPKNKVMYRY ILEYGPEKVWTDLMPLEVNVGYEQEFTPELPDLLKKIAVLGGTEFKLTMSFFEIPNEGPK VRLPILENPTIMVTCKKGSFPVTKNVEGPGKISFKGATDLNAVIEGTLLTVVAEPEEGQA LLSLEANGQNILATKSFRVTSPTEVKAVFGKLNTYKVTLKSNDNKYGSINLKEALNPDAI PEGTTIHIEVRPNGQCELTKLMANDEDITETKSFTITKDTEVVATFVNHTGVESVVAQQL RLYPNPARDYVLLEGIPAGATVAIYTLQGQLIYQVEAASDTLRIELTQLQEGTYLLQVGG ETRRLIIRH >gi|228308986|gb|ACLR01000023.1| GENE 7 10831 - 12570 1621 579 aa, chain + ## HITS:1 COG:MA4292 KEGG:ns NR:ns ## COG: MA4292 COG3291 # Protein_GI_number: 20093081 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 119 441 785 1109 1995 120 28.0 1e-26 MIKKLLFIAGLVATMSGLSLQATAQTAALSNHGDGGVKVPAYSSRHELGVGRQLMSQDVK ATDERTIYPTNEGFFIRFVSEKDKTVEIAPAQTAQDKAKEGIYYKDVVIPETLHVKKGTD EVIPCTVVAVGQAAFALTDVYTVQYPATCKELKDRVFRLASLKECVIPDQIEKVGDNVFI DCKEATKVVIGKGLKAMGETPFINCQNLKDITVSPDNTFLTVQDTILYSKDMSKLYLCPS ERRVKVVLPNTVKEIEDYAFLSCIYVKELVLNEGLERIGEEGLYNCSWLEQLTIPASVRE IAPRALGLLKTCEKITVAEGNKTFEAKSDGVNEGKLLINKVKNSLHTCLYKGTKNVTVPE GIKEIEPYAFLACRWTESLKLPASVETIGQTAFSEMVSLKEIEIPEKVQTIPLYCISDCK ELTKITLGKNVKMIEDQAFAGNDTMEKKGGTLQILAVTPPAVGKDSEGTTYDMGKDFYKK VTLEVPAEAREAYKKDRNWKKFRRVYPVGNELVQNELPLQINVAGGVLSITAPEVAPIAI YTLDGQVVYTTSAQEAQLALPAGLYMVTYGTQATKVLVD >gi|228308986|gb|ACLR01000023.1| GENE 8 12680 - 15028 1963 782 aa, chain + ## HITS:1 COG:lin1204_1 KEGG:ns NR:ns ## COG: lin1204_1 COG4886 # Protein_GI_number: 16800273 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 121 394 343 640 801 72 26.0 3e-12 MKSKLFLLLTLLGVLGLMAPRALAQAPKSATGTITITTALKVGERMNLIVEGPDGSSKSV EIAGAKAVPVEGKIAYEITSKPITVKGDIRSFEITMSQVKNLKFENCVNLKTLICGTNLL DYLDLSGLSALEYLNCTSSNINTIKLDGCTSLKEIRADANKLKSINLAAAPKLETVSLPI NALTEINLDGVSCKDLDLSSNNLTSLDLSKTTGIERISVSTNPLTSINLKGCTDLETLSA KNTKIGEIDLSDLTELSNVDLHAGKLSKITFKGNSELTDLDLSENQLTAIDFKECPKIAY LSLNHNALPEMHLDGLDNLKNINLRKNKLTNFSIKDCPELNTVVLSDNLLTSTDLTGGKA SLRTVYVDGNQLTTLNLTGFAKLETLSASKNQITEVKLDGCEKLSYVDLSENKLSALTFP GLADLSEIYIQSNSIQGDAMTNLIKSLPKKKASSLGTFAGSLYALRTRSGNEQNRCLKAD VKAAHDLGWGIYDKRPTKDEKTGKIEERWVAYNGAAFCKITTKTVGEGGSIKINGQTSLD NVYTDTKVTITSDHKDGYALKSLVLVFKGDSVNIFNERYFYAPDVDAEVVATFTNDICKV ILKKLGKGVLKLNGDGLDTRGLPRGMEIEVVAGAEDEFADWQLGALTMRKLKSGGKPINI MGSKSFTLEEDTEIFAEYQNTNGGAVPTDTAVWDGEKWLGVIMPSVPSSEEAQLYPNPAT DFVTVAGAQPATTVNVYTLSGSLVASYATNREGYAELTVADLPEGAYIVLIGNDPRKLII RR >gi|228308986|gb|ACLR01000023.1| GENE 9 15168 - 18095 3367 975 aa, chain + ## HITS:1 COG:no KEGG:PGN_1416 NR:ns ## KEGG: PGN_1416 # Name: not_defined # Def: probable lysyl endopeptidase precursor # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 975 1 939 940 535 37.0 1e-150 MNHTFTSKLLAVAVVALSWVGGLVAQQSFGGVPAGFTASTAELRSAGSTPVVRVLPEFNV QDFRTARAWNKGQVQFKPLTIGRVVKTSIDFARQAQAIELEYGKEIYRLRVSSPGAKAMT LLYDDFFIPNDGGRLYIYTPDRSTLLGAYTHETHPKHGGFANEPLNGDEVIMEYEPGRTG AMPTLLVSGIGYIYNAKVDNNTNKLRIFFPGEDESGDPIPQIGINCPEGAEWQTEKTGVC QLIMYDEEGVGLCSGNLMNNTNQDFRPLILSAAHCISLTTRQEVAQKYLDKWTFVFHYEK PTCSNGSLALNRGKSIVGCDVRTFLPFLGMSDGLLLEAHTQVPENYRVYYNGWDRWSMVP KTPVVGIHHPMGDAKKISIADGPVRIGQWDTGDGEAGAKNAHFEFKYNHGATEGGSSGSS LFSADHLVVGTLTGGRTEGDDFYGRLKFHWDHFAKGDSTDRMDIYLDPKDGGQAKQLEGT WRNGLKPLQSVSNLKVEVTNTEAQLSWAAIDKNTIPAKWKVSYRIYRNGTFVKEVTDNKF TESREVALGDKSREGSVVYGVQVRYDYGGETLPDDGRNEGKAYTYGESDLLEQGAYWGNA VHTMTATPKASSNGVLVAWSEPANLQEVSLFGYPDPDKMEFIPYKHPKAELRGRYSTPNR YNLTVRIASDRFVGEASPTLYAVRLIPDTLINLPEPEKAQRYTIILRNGIARNDMLGGMA GVSYEQSFNVPEDWKPGEWVTVLLDKPFKIDPMSDLFIGYGIPNEDNAAGVVCVKNTNDA VRPYLDGFLLSGQMMVPVPETKFKGSTPPEEYHAMRFVFAPSDRVEKLEKFDCFAKGKVP VPFPKVKSYKLLKNDKVIAEGLTGNDYQDPTGSTTDTYTVEVVYENGGAYAPVGVSEVER SLEPVAYPTQLDATAQLYVDNSAEVLTLRILTVDGTNVMQIDQPGRIVDLSTLPAGQYVV VMQTATGTFTQYITK >gi|228308986|gb|ACLR01000023.1| GENE 10 18493 - 20424 1439 643 aa, chain + ## HITS:1 COG:YPO2538 KEGG:ns NR:ns ## COG: YPO2538 COG1649 # Protein_GI_number: 16122756 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Yersinia pestis # 130 513 12 411 427 161 28.0 4e-39 MALANRQQLTADRHHSIHTPEEIGKVSVEILKPPRRYEKNLRNFEIFLPKFHFILPNFYF PVPWGIFVSSLEIPDFLERRVSLRGNASHRASRDCTLHAVISYLCGVYQFTRAMPQRLRS SLLSTLRQSVLLLLTLFLLSQCGTRHSTTRRPHIELPDCTISEIAYPAPQHPKAEMRAVW LTTIWGLDWPKMTADTHAGMVRQQESLDKMLDDCVRAGINTVFLQVRMRGDLLYPSTLEP LSTTISKTGVLPEGYDPLQYAIDACHHRGMSVHAWMVSYPLGTNDHVRALAKQGKGFYAA HPEMCLRQGNAWFMDPAQPAVRTHMAQLVRDLVTRYDVDGVHLDYIRYPDGPSKFNDLKS YQRMNPDRLPRMAWREANVTAMIDTLHRTLQEVAPEVALSTACIGKYQQLPKPAPGGYFC KDDVSQDPLVWFQRGIVDFIVPMIYYKDGHFNYYIADWAKRIAPHGPIVAGLGVYRLYDN SRWKLQDIYNQLDTLAQYDLSGVSYYRAEQLLQMYNQLPAERQDQLLMPTLRPAFGAAPR IPFGKASVEEIVDDRDQLTITWGYDLKEPTGHTFNLYYRLYGPHLDCPLVLLGQNLAGRS AVISRDFLPKDVLVEFFVEPATFSGHTGQLSAGALYYNSDELK >gi|228308986|gb|ACLR01000023.1| GENE 11 20428 - 21543 898 371 aa, chain + ## HITS:1 COG:lin1513 KEGG:ns NR:ns ## COG: lin1513 COG0635 # Protein_GI_number: 16800581 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Listeria innocua # 3 321 13 331 385 214 36.0 2e-55 MWGLYLHIPFCPTRCVYCDFYSQSDLSLQSSFVEALCRELEIYHDRATWATPPRTIYLGG GTPSSLPLPLLERLMQQIRSLWRLDKTIEITIEANPEDVSPEWANGVALLGFNRISLGVQ SWSDETLRFLHRRHSAAQAERAVNYIRQAGIHNVSIDLIFALPEGYERDWTESLAHALAL PVTHFSAYGLTYERGTRLDRMRERREVIPSSEETYVTQYYALVAACQKAGFTHYELSNWA LPGFASQHNSAYWAGTPYLGLGPSAHSYMSGHRWWDVSDIHLYIERLQEDQLPIADEEWL SPTELYEECVMLGLRTSRGIDLRRAELQVEPIMDRATPWLDQGLLILTDDDHLRLTHDGL IWCDRICAALC >gi|228308986|gb|ACLR01000023.1| GENE 12 21578 - 21784 161 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470674|ref|ZP_04055526.1| ## NR: gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 [Porphyromonas uenonis 60-3] # 21 59 1 39 50 65 89.0 9e-10 MHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSGQSCNQDCETVDCCNSLMLSI SGYSSRIL >gi|228308986|gb|ACLR01000023.1| GENE 13 21763 - 22323 705 186 aa, chain - ## HITS:1 COG:mlr3120 KEGG:ns NR:ns ## COG: mlr3120 COG0457 # Protein_GI_number: 13472730 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Mesorhizobium loti # 11 143 63 195 280 61 30.0 8e-10 AESNKYVSLVPDDPDGYYQRAQIKSKLQDLQGAIDDYSKAIELSDTYLWAYLKRADRYTA LGRKDAATADYRKVIEILQEHDATDIAMAYAYQSLGEQEQAIAAIAKCIEEAPDDAELYY SISGVYGRMGKTEQALDNLRIALEKGYNSFSLLEQDDDLAALRDNPQYKALMQQYKEKLG YKMRDE Prediction of potential genes in microbial genomes Time: Fri May 27 09:00:31 2011 Seq name: gi|228308983|gb|ACLR01000024.1| Porphyromonas uenonis 60-3 deg1118640599543, whole genome shotgun sequence Length of sequence - 516 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 516 424 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308983|gb|ACLR01000024.1| GENE 1 57 - 516 424 153 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 40 152 123 236 294 90 41.0 1e-18 MLLRSRKRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSL TMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMT DYEASLGIVTSVTQTGNPLHNAMAERLNGIIKN Prediction of potential genes in microbial genomes Time: Fri May 27 09:00:32 2011 Seq name: gi|228308976|gb|ACLR01000025.1| Porphyromonas uenonis 60-3 deg1118640599641, whole genome shotgun sequence Length of sequence - 3159 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 687 716 ## gi|228469490|ref|ZP_04054492.1| hypothetical protein PORUE0001_1918 2 1 Op 2 . - CDS 700 - 2019 514 ## gi|228469491|ref|ZP_04054493.1| conserved hypothetical protein 3 1 Op 3 . - CDS 2037 - 2285 96 ## gi|228469489|ref|ZP_04054491.1| hypothetical protein PORUE0001_1920 4 1 Op 4 . - CDS 2330 - 2653 184 ## gi|228469492|ref|ZP_04054494.1| hypothetical protein PORUE0001_1921 5 2 Tu 1 . - CDS 2758 - 3126 460 ## Fjoh_3004 type IV secretory pathway VirB4 components-like protein Predicted protein(s) >gi|228308976|gb|ACLR01000025.1| GENE 1 3 - 687 716 228 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469490|ref|ZP_04054492.1| ## NR: gi|228469490|ref|ZP_04054492.1| hypothetical protein PORUE0001_1918 [Porphyromonas uenonis 60-3] # 1 228 1 228 229 373 100.0 1e-102 MKQIIKTFSLVLVSLSALLFASSCKDDLKPQEQEVDFSVSCTPPQAQIKREGQMVTTQLL ITEQEVECPRPTKYSVSFAYDETVGTLLFLGKSVQSGASIPLASLTNLSLTYQAKELVGN KVKVTVTNDAPKAVSKEATWTVNADDTYSVETSQEGEGELVVRGAKNLQRVPAGTELTVF ATPADGWELVALTANDVDILKSKTFEVAGNTTVRATFTKKAPTTYAVT >gi|228308976|gb|ACLR01000025.1| GENE 2 700 - 2019 514 439 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469491|ref|ZP_04054493.1| ## NR: gi|228469491|ref|ZP_04054493.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 439 1 439 439 770 100.0 0 MCAVFTTEDPETYAVTLTKEGEGKVDISGADNLGAVVTGSKLTVTATPADGWEIVSITAN GKDITTDKSFVVTSNTIVKVVFKKLPPKTYAVTLAKEGEGKVAISGSDNLGAVVTGSKLT VTATPADGWEISSITANGRDITTEKSFVVTSNTLVRVVFKKQPPKTYALTLTTRDDYSSI FVVFPNGDEKELEAGKPISVPAGTKLNVKVYFYSQYRYVASMTANEVDILKDRSFVVTQD TALKVVSAPTLSTRVNLTGRGKVSVTVADGRKKVYTLQDKPDRPDDACYILASIGALDPG TKLTVTAEPADGWELEGITAYRKDITASKTFTVTSDTDLYVFFRKKTTKTYKVTVVCSEG GSIELKRHNRVFDRFESVDLDRVPEGTYLTAFSNPNEGYELSECLFNGILRGGGVINKDT EVRAVFRPKYSTNKNKSNF >gi|228308976|gb|ACLR01000025.1| GENE 3 2037 - 2285 96 82 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469489|ref|ZP_04054491.1| ## NR: gi|228469489|ref|ZP_04054491.1| hypothetical protein PORUE0001_1920 [Porphyromonas uenonis 60-3] # 1 82 1 82 82 137 100.0 2e-31 MTVTNDAPKELRKELVWNILAEEAYWVKSEQEGDGEITITGCDDLDAVKPDTKLAVSAKP ADGWELVALTANDVDISKTRAS >gi|228308976|gb|ACLR01000025.1| GENE 4 2330 - 2653 184 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469492|ref|ZP_04054494.1| ## NR: gi|228469492|ref|ZP_04054494.1| hypothetical protein PORUE0001_1921 [Porphyromonas uenonis 60-3] # 49 107 1 59 59 119 98.0 9e-26 MKRLIKPLWFALATLSALLSVVSCVKDLAVKEQEVSFDSSLTTEQSQIVKGDSTVTTQLL INEDKADCPRPTKYSVSFTYDEEAGTLFFLGNPIQSGKPISLRHSPI >gi|228308976|gb|ACLR01000025.1| GENE 5 2758 - 3126 460 122 aa, chain - ## HITS:1 COG:no KEGG:Fjoh_3004 NR:ns ## KEGG: Fjoh_3004 # Name: not_defined # Def: type IV secretory pathway VirB4 components-like protein # Organism: F.johnsoniae # Pathway: not_defined # 1 122 682 803 837 190 75.0 1e-47 MAEFIKYLYKTVRKHFGEAVVVTQDPDDILRSPVVRESIINNSDCKILLDQRKYMNKFDA IQEALGLTNKEKEQILSINQNNDPNRLYKEVWFGLGGMVSAVYATEVSLEEYFAIQPKRP KK Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:08 2011 Seq name: gi|228308974|gb|ACLR01000026.1| Porphyromonas uenonis 60-3 deg1118640599740, whole genome shotgun sequence Length of sequence - 551 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:09 2011 Seq name: gi|228308972|gb|ACLR01000027.1| Porphyromonas uenonis 60-3 deg1118640599758, whole genome shotgun sequence Length of sequence - 590 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:09 2011 Seq name: gi|228308968|gb|ACLR01000028.1| Porphyromonas uenonis 60-3 deg1118640599516, whole genome shotgun sequence Length of sequence - 956 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 36 - 440 598 ## COG1748 Saccharopine dehydrogenase and related proteins 2 2 Tu 1 . - CDS 594 - 932 449 ## Dalk_0889 1,4-alpha-glucan branching enzyme (EC:2.4.1.18) Predicted protein(s) >gi|228308968|gb|ACLR01000028.1| GENE 1 36 - 440 598 134 aa, chain + ## HITS:1 COG:slr0049 KEGG:ns NR:ns ## COG: slr0049 COG1748 # Protein_GI_number: 16331467 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Synechocystis # 1 124 265 388 398 181 61.0 3e-46 MASIEPINYNGQEIVPIQFLKAVLPNPQELGENYTGETSIGCRIRGVKDGKERTYYIWNN CSHQAAYRETGTQGVSYTTGVPATTGALMLAKGIWGGAGVFNVEQFDPDPFLEEVARQGL PWHESFDIDIEFEK >gi|228308968|gb|ACLR01000028.1| GENE 2 594 - 932 449 112 aa, chain - ## HITS:1 COG:no KEGG:Dalk_0889 NR:ns ## KEGG: Dalk_0889 # Name: not_defined # Def: 1,4-alpha-glucan branching enzyme (EC:2.4.1.18) # Organism: D.alkenivorans # Pathway: Starch and sucrose metabolism [PATH:dal00500]; Metabolic pathways [PATH:dal01100] # 24 107 586 668 673 74 48.0 1e-12 MLSLCRLTPRFAELSDYCYHSHTERQVIAFMRGDGYLFAFNFSPTESYTDYLIEGVPAGQ YELLLDSDAVACGGFGRIDASVLHHTRATAEGGTELRLYLPSRSAQVYQRKR Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:12 2011 Seq name: gi|228308964|gb|ACLR01000029.1| Porphyromonas uenonis 60-3 deg1118640599620, whole genome shotgun sequence Length of sequence - 840 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 276 270 ## gi|228469499|ref|ZP_04054497.1| putative tetratricopeptide TPR_2 repeat protein 2 2 Tu 1 . - CDS 379 - 792 407 ## gi|228469500|ref|ZP_04054498.1| tetratricopeptide repeat domain protein Predicted protein(s) >gi|228308964|gb|ACLR01000029.1| GENE 1 3 - 276 270 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469499|ref|ZP_04054497.1| ## NR: gi|228469499|ref|ZP_04054497.1| putative tetratricopeptide TPR_2 repeat protein [Porphyromonas uenonis 60-3] # 1 91 1 91 92 151 100.0 1e-35 MGRKDAATADYRKVIEILQEHDATDIAMAYAYQSLGEQEQAIAAIAKCIEEAPDDAELYY SISGVYGRMGKTEQALDNLRIALEKGYNSLI >gi|228308964|gb|ACLR01000029.1| GENE 2 379 - 792 407 137 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469500|ref|ZP_04054498.1| ## NR: gi|228469500|ref|ZP_04054498.1| tetratricopeptide repeat domain protein [Porphyromonas uenonis 60-3] # 21 137 1 117 117 213 99.0 2e-54 MSSQLRRCLPSNLSSRLWSPVSKTGEYLFLIGLAHQNIGDNKGALEYYQQVTERQELDDV VASHIATAYQGIGDYSSALKYIDEAISLDPTDYTYIYTKAQMLSEDGNLRRALAESNKYV SLVPDDLMATISVLNQE Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:25 2011 Seq name: gi|228308961|gb|ACLR01000030.1| Porphyromonas uenonis 60-3 deg1118640599615, whole genome shotgun sequence Length of sequence - 962 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 200 201 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 444 - 503 3.6 - Term 468 - 516 14.2 2 2 Tu 1 . - CDS 546 - 962 447 ## COG2217 Cation transport ATPase Predicted protein(s) >gi|228308961|gb|ACLR01000030.1| GENE 1 2 - 200 201 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 66 1 66 84 130 98.0 2e-29 MKYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLF >gi|228308961|gb|ACLR01000030.1| GENE 2 546 - 962 447 138 aa, chain - ## HITS:1 COG:FN0258 KEGG:ns NR:ns ## COG: FN0258 COG2217 # Protein_GI_number: 19703603 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Fusobacterium nucleatum # 1 129 481 610 614 160 64.0 7e-40 VPADKLSRLEAILQQPARGTVLFVGDGINDAPVLARADVGIAMGGLGSDAAIEAADVVIM DDNPLKIATAIRIARHTVGIALQNAWFAIGIKVLVLLLALLGVASMWMAVFADVGVTVLA VLNAMRALRPVKVSRSSN Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:30 2011 Seq name: gi|228308958|gb|ACLR01000031.1| Porphyromonas uenonis 60-3 deg1118640599658, whole genome shotgun sequence Length of sequence - 618 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 618 821 ## COG3590 Predicted metalloendopeptidase Predicted protein(s) >gi|228308958|gb|ACLR01000031.1| GENE 1 3 - 618 821 205 aa, chain - ## HITS:1 COG:XF0576 KEGG:ns NR:ns ## COG: XF0576 COG3590 # Protein_GI_number: 15837178 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Xylella fastidiosa 9a5c # 9 205 126 323 700 82 26.0 4e-16 EAGSNEYRVSVLYKQAIDSVKRNELGAQPILDELKSIEAINSKEALVDFAAQQDNKGDDT FFGTYVMADAENSDMNIFNLNQTSLALGNKEYYTDPKNGEIIKSYNQYIERIAQLAGYSA EEAQRIAKNNIAVSTQLAKMCYSQTELRDAQRNFNKVQIKKFVADNPGFDWARYIKGRNL QTLESWNAGQLKFFKDFSKWFPTAD Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:35 2011 Seq name: gi|228308945|gb|ACLR01000032.1| Porphyromonas uenonis 60-3 ctg1118640599655, whole genome shotgun sequence Length of sequence - 17008 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 1 average op.length - 8.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 368 - 400 3.1 1 1 Tu 1 . - CDS 404 - 3241 2233 ## COG0642 Signal transduction histidine kinase - Prom 3336 - 3395 2.2 - Term 3394 - 3440 -1.0 2 2 Op 1 . - CDS 3500 - 4630 1567 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 3 2 Op 2 . - CDS 4651 - 6033 1515 ## PG1304 hypothetical protein 4 2 Op 3 . - CDS 6107 - 8701 1768 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 5 2 Op 4 5/0.000 - CDS 8727 - 10202 1651 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 6 2 Op 5 . - CDS 10233 - 11018 870 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases - Term 11030 - 11064 -0.4 7 2 Op 6 . - CDS 11110 - 12807 1598 ## BVU_3991 glycoside hydrolase family alpha-glucosidase 8 2 Op 7 . - CDS 12811 - 13728 745 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily 9 2 Op 8 . - CDS 13748 - 15187 1671 ## COG1295 Predicted membrane protein - Prom 15381 - 15440 2.8 - Term 15835 - 15896 15.5 10 3 Tu 1 . - CDS 15917 - 17008 1297 ## COG3590 Predicted metalloendopeptidase Predicted protein(s) >gi|228308945|gb|ACLR01000032.1| GENE 1 404 - 3241 2233 945 aa, chain - ## HITS:1 COG:RSp1178 KEGG:ns NR:ns ## COG: RSp1178 COG0642 # Protein_GI_number: 17549399 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Ralstonia solanacearum # 416 790 287 659 676 127 29.0 1e-28 MSRKPLLILSSLLIVACLLVSSCQQRDTVTFTVAERQAADSLVRATQDIDSLARLQTRLE REGDILGSIVALRVLGDKFRNESNFDKALTTHSEGLKQAETILDTLEWVQALNNVGTDYR RMGILDVAQEYHYQAWSLCKFTADTSFVAIKNQAKSLNGLGNIYLTLGNYERADSALRKA LLVEQQLGSMVGVAINYANLGSIFEHRGEIDSAWTYYRYSMDANQKAGSTLGIALCHSYF GSLYEQAHQYDKAAKEYEAGYQLMRDSKDEWHKLNLLVALASVHNATRDDAKMLQYLDQA RSSAEKIEDTEHLADIYTLYYQYYKRLGDWHAALESYEQATEMKQSILDMDKFNRMQNTS LNIERNIQNKKMNEAKIKLEHERAERRVENITFTVIALLLLGSLGFFLYIQRILRRSHKK LKRMSSMRENFFTNITHEFRTPLTIILGVSQELQQEESEQIRKRAESIERQGHGLLTLIN QLLDISKIKSSVGDSRSCRGNVTAHIAMIVDSYRDYAHSRDIELTYLPQDQVVMNFVPDY VNKVFNNLLSNAFKFTPPHGKISITLWRLEDSIYIDVSDTGHGMDSETVEHAFEPFYQAK GDSKYIGTGIGLTLVHQIVKASKGQISLESKLGKGTTFHIIVPIIDDQATPEQTLSAASN TPLLPHLESDLQDSECEQDEPCRLLIIEDNHDIAHYIGSQFEDHYSVSYATDGAEGFKRA VELVPDIIITDLMMPGLNGLDLCRQIRGNEIVNHIPIIVVTAKVSEEERIKGIEAGADAY LTKPFNTTELRMQVERLLDSRKTIRQKFAQIVIKGQEKEDEPETSKLEEADITFLTKVST IVNQQISKNKETNVEEIAASLYMSSRQLHRKLKALTGYAPSAYILRLKIRKACELMDQDS EISLSDIAYQSGFETYSTFSRSFKSICEISPSKYREQKSIMKVHD >gi|228308945|gb|ACLR01000032.1| GENE 2 3500 - 4630 1567 376 aa, chain - ## HITS:1 COG:BS_tgt KEGG:ns NR:ns ## COG: BS_tgt COG0343 # Protein_GI_number: 16079824 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Bacillus subtilis # 9 356 14 355 381 372 51.0 1e-103 MQFTIDHTCPHSDARTGVIKTAHGDIQTPVFMPVGTAGAIKAVTMEQMEQETDARIILGN TYHLYLRPGIEILKEVGGLHRFGTWSKPILTDSGGYQVFSLAAMRRITPEGVTFASHIDG SKHLFTPERVMEIERAIGADIMMAFDECCPGDASYAYAKQSLDTTEQWLDRCLKHLEQTP PLYGYEQALFPIVQGCVYPDLRRRAAEHIASLGAPGNAIGGLAVGEPTDKMYEMIELTNS ILPKDKPRYLMGVGTPANILEGIARGVDMFDCIMPTRNARNGQLFTWQGTINIRNAKWRT CHEPIDPEGTASTDHRYTRAYLYHLFKAQEITGLTLASIHNIAFYLDLVNQAHDHIIAGD YPDWMRSVLPALARRL >gi|228308945|gb|ACLR01000032.1| GENE 3 4651 - 6033 1515 460 aa, chain - ## HITS:1 COG:no KEGG:PG1304 NR:ns ## KEGG: PG1304 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 44 456 1 442 446 250 36.0 9e-65 MYHYRFTLLLFITLLGLPPLIAQTPHSAEIHSEDDSVTAPAVELTTLKVQYLLNRANPVA PLPKEVLPTTLLVQAPLSSAVSVISSSKSPELSLDLPTSLVCKSSPLATALHGEELQIPI LQQYYERSLQSVNQLKLSTPALISRQEGDLLAHRIDITTVGSSKPIVAATVNTPFAGVDA SDQLHGVTLARKYWFPGLESNIQFSQTYISPNWHKGGNSALALHSKQLLRLSYERDKVNW LNELEWRVGLNAEIRDSLQGYNISDDLLRMRSNLGIKAFKGWYYSLDVEARTQAFEQRSE DKKVLYSAFASPLTLTSGLGMKWVVDNKSKTHYGRRFRLDLNIAPLAYDFKWSARKDIDM TRHGFKEGKNIYSAIGSMLRANMIWDFTDTFAWESRLYYNTSYKRIETEFENSLIFAFSR YFSTRVNVLLRYDDAVPLTLENRSRLQIYQMLTIGFDLKI >gi|228308945|gb|ACLR01000032.1| GENE 4 6107 - 8701 1768 864 aa, chain - ## HITS:1 COG:BS_priA KEGG:ns NR:ns ## COG: BS_priA COG1198 # Protein_GI_number: 16078634 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Bacillus subtilis # 11 863 15 801 805 194 22.0 8e-49 MLARIILPLALEEEYTYRVPEALCEQARVGMRALVQFGSKRYYYAIISQLIEESERPLGQ LKSIIALPDREAIVTQSEIDLWRWGATYYICSLGAWLTAAIPSSFLPSSETQVAWREPDE TSEGDQATDYKATELSEEIRRELLSMRGHQAKVSKLAKLLGDRIYPEIDRLLHAGVLIGS ESIPRYSRSVQVGSPAVQFAEELCSEEALSELVESLSRAKAQKAMVEQLIDLLYLHELPL DTPLLRETLVGRDTNRQATLRALIKRGVLRETATLFDPLVRSTVQRTVSTNESNRQSQLF DSLIGETSRPVLYQATSNEEQIELVVSMVEQMLQRSPSAQVAIYVPQLFLFDQSLLYSAL QQLARSSGATPFDLVLYSSSTTDAERMALRARLLGLTHRERGLIVLTSRMGSLLPLSRCD LVIVTDEESSRYKQSEPAPRYHARDLTVVACKRSQTPLLLTTVAPSAEALYNVERGYYRL LNQLSAPTTPTTPKASRPFELIDLSLQRKQGKMPWGQMLSIELRKALLDQCQAGHKSILL LNRRGYAPHLVCRHCQKTLQCPNCDVGLVYHKSTQSVSCSYCNFTAPAPRACPHCHQSDT PTPGNGEVPTDSNLGAFSIQGYGVERIAEELTLFIPPEVPILELSASQYYNKESQQRMRQ LIRSDEPAILVGTSSLIYLDAIRNVGLIGLANLDQLIVGDDFRANERAYAALSRFGSNYP TAQLYIQSYQTDSPLLDSLQGGATAEPYGVSELAEREYLHFPPYVRLIYVYVRGASQGDV CYTVAALSRLMQAEPFQSLWQASAPIAPYVSWVRMRHIRYICMRIRSSSSWREVRTQLSH IISTVQQSAIQARRVQIYCDVDPL >gi|228308945|gb|ACLR01000032.1| GENE 5 8727 - 10202 1651 491 aa, chain - ## HITS:1 COG:TM1640 KEGG:ns NR:ns ## COG: TM1640 COG0493 # Protein_GI_number: 15644388 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Thermotoga maritima # 34 491 5 462 468 423 50.0 1e-118 MSEQKDLVAARRNEPWREELRKSHTGKERMSIPRVKMTEVDPHERARSLTKEVNCGLTEE EARREAIRCLDCANPSCMEGCPVSINIPSFIKNVERGDFASAAHIIRESSSLPAVCGRVC PQEKQCEKHCIYTEKMKRDAVAIGYLERFVADYERENGLYELPEMAPANGKKIAVIGSGP AGLSFAGDMARLGYDVTVFEALHEVGGVLKYGIPEFRLPLRVVNAELKILEQLGVHFETN VVVGRTLSYEQLQEMGFVGIFVGSGAGLPNFMNIPGENLAGVMSSNEYLTRVNLMGAGTE GAETPIYKGDVVAVIGGGNTAMDSVRTALRLGAKRAMIVYRRSEEEMPARREEILHAKAE GVEFLTLHNPIEYEGNEKGKVCRMKLQRMELGEPTPDGRRKPVPIPGAIDEVDVDVVVVS IGVSPNPLIPRSFQGLEVSPKGTVIVNEHNQSSLKEVYAGGDIVRGGATVILAMGDGRKA AANMHAALSQQ >gi|228308945|gb|ACLR01000032.1| GENE 6 10233 - 11018 870 261 aa, chain - ## HITS:1 COG:TP0736 KEGG:ns NR:ns ## COG: TP0736 COG0543 # Protein_GI_number: 15639723 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Treponema pallidum # 1 260 1 262 280 276 53.0 4e-74 MNRIVSKTFLSEKVAKLVVEAPLIAKSRRAGHFVIVRVTDHSERVPYTIADADVDAGTIT LIVQAVGESSQRLVALNAGDMIHDIVGPLGQATHIENFGTVVCAGGGVGMAPLYPIAKAL KAAGNKVIVVAAARTKELIILEKEFREFADEVIIMTDDGSYGTKGLVTDGVESVIKREKV DLCVTIGPAIMMKFVALLTKKYNIPTTSSLNTIMVDGTGMCGACRITVGGKTRFVCVDGP EFDAHQVDFDELLMRLNTYRK >gi|228308945|gb|ACLR01000032.1| GENE 7 11110 - 12807 1598 565 aa, chain - ## HITS:1 COG:no KEGG:BVU_3991 NR:ns ## KEGG: BVU_3991 # Name: not_defined # Def: glycoside hydrolase family alpha-glucosidase # Organism: B.vulgatus # Pathway: not_defined # 2 475 6 491 565 432 46.0 1e-119 MRTVIYSTLVRLWGNQKPHAQLTPYGTLEQNGTGTLEDFDDAALDYLTSLGVSHLWPIGI IRHATQTPLHGWTDCPDQHPDIVKGQAGSPYAITDYYDVHPTIVRDPMKRRETFRSFIDR CHRHGLKVIIDFVPNHVSRQYDGTHTPERATPLGAQDDRSKAFDPNNNFYYLPGSSLQLP NRSSSYHEEPARVTGNDCWSATPSANDWYETVKLNYGVDYRPDRSSVAHFDPIPATWLQM RDILCYWAAEGVDGFRCDMVEMVPVAFWHWVIPQVQEKYPVTFVAEIYQIDNYCKYLADG CFDLLYDKSGLYDTLYQVVTQERSVSAIEERLISNNKEYAPDELLYFLENHDEVRLASPY FADTARRGLTAMTLLALATPSPLLLYAGQEYGERGLDAEGYSGPDGRTTIFDYWSIPALG HRDPADPTYQSYQWLMRWAQHPVILRGAFHSIQEQARAWGGFNAERTYGYLRLLDPAEQQ AGETIGIAVLGNFTADLQRYPLFLPSLEKAFERQRLLRVTHHTPLEKPDEQLYAFQPWAP LMVELAPFGIQILELQNANLNQISG >gi|228308945|gb|ACLR01000032.1| GENE 8 12811 - 13728 745 305 aa, chain - ## HITS:1 COG:aq_1386 KEGG:ns NR:ns ## COG: aq_1386 COG1752 # Protein_GI_number: 15606577 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Aquifex aeolicus # 47 280 15 247 259 154 35.0 2e-37 MTLNPSNLKAQGERLIERSSALISTSLDKLVERVRTWTHGSRPTFGLALCGGAARGLAYI GVFRFLEEHHVRPDVIAGTSVGSLMGALYADGYSSEEIYELSPQFGFMNMTSLTTPRLSL LKTHKYQEFLRSTLRHQRIEELPIPMHIIATNLNKAEAHDFTEGDLAPAVVASCSIPILF EPVVIDGEQYVDGGVFMNLPARPIRESCDFLLGINLSPEVDNTPTKNILRLSDRLIRIMM RANVTIDLELCDVVLQTPLLSHFGAYDVSPVDIISDIGYQLMCKAYEEEEQFREIIDLLS QRGKA >gi|228308945|gb|ACLR01000032.1| GENE 9 13748 - 15187 1671 479 aa, chain - ## HITS:1 COG:FN1154 KEGG:ns NR:ns ## COG: FN1154 COG1295 # Protein_GI_number: 19704489 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 87 458 19 379 396 156 27.0 8e-38 MPHKSNSIHKHEDSKQSPIEHASRKPSIWLRKLKVGAYKVVRFLTSDMWHIQPDEVRGFR RLYINTLKALYMAIKGFIDQRLSSHASALTYRTLLSIVPMLAIIVALAKGFGLQGTIYDF LMTYMPGHQSEVETIMGFVENYLGQVQGGLFLGVGLVLFLYTIFQLLDTVEQTFNVIWGV PRGRSIGRKLTDYITMVVLLPILMTLSSGLTVMMATIQNTWFNDYIFFTPLWEFMLKLFP YIILIFMFAGIFIALPNTHVKFVPALISGVIAGSAFQVLQALYVSGILWISKYNAIYGGF AAIPLLLLWLQVVWTITLFSAKLCFSIQNVVNFTYAKDATNISHRYKDFMTVIVMAHIVQ RFLDHTEPKPHNIPSLSEACHLPINQTGEIIAQLLEEDLIIEAVYSSRDKEQHYNLAVDP NLLTVGYLLDRMDRSGHRSHMLTQQQFAEEWQLVVASRHAFTEPPLTTRLSDLPLGRKL >gi|228308945|gb|ACLR01000032.1| GENE 10 15917 - 17008 1297 363 aa, chain - ## HITS:1 COG:ML2613 KEGG:ns NR:ns ## COG: ML2613 COG3590 # Protein_GI_number: 15828409 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Mycobacterium leprae # 4 363 306 666 667 365 46.0 1e-101 VCCYLSDDFVQANFDFYSKTLSGIKEMHPRWRRAVNLLNGTLGEALGEVYVKKYFPEEAK ERMKTMVSNLQSALKDRISQLKWMSDETKQKAIEKLSNFTVKIGYPDKWKDYSQLNISED KSFVDNVRSAIQFEHDFNMSELGQPVDRSRWYMNPQEVNAYYRTSTNEICFPAGILQPPF FNINADDAVNYGAIGVVIGHEMTHGFDDQGSEFDAVGNMHNWWTEADKQNFKTSTERLAQ QYSKIKVNDHLNADGHLTLGENIADQGGLLVSYLALQKQLNGKKVDKIDGFTPAQRFFIG YARIWGQNITPEEEVRLTKIDTHSLGNNRVNQALKNIDAFYEAFNVQPGDPMYIAPEERV LVW Prediction of potential genes in microbial genomes Time: Fri May 27 09:01:48 2011 Seq name: gi|228308940|gb|ACLR01000033.1| Porphyromonas uenonis 60-3 ctg1118640599663, whole genome shotgun sequence Length of sequence - 1040 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 198 57 ## gi|228469519|ref|ZP_04054513.1| hypothetical protein PORUE0001_0729 - Prom 250 - 309 3.4 Predicted protein(s) >gi|228308940|gb|ACLR01000033.1| GENE 1 3 - 198 57 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469519|ref|ZP_04054513.1| ## NR: gi|228469519|ref|ZP_04054513.1| hypothetical protein PORUE0001_0729 [Porphyromonas uenonis 60-3] # 1 65 1 65 66 123 100.0 4e-27 MNKTKKWSLATVLCGLLVTTLLTACGGGGGSVWKEPNSENKREKPNQELPTIEQRLTFKA DKPIY Prediction of potential genes in microbial genomes Time: Fri May 27 09:02:14 2011 Seq name: gi|228308871|gb|ACLR01000034.1| Porphyromonas uenonis 60-3 ctg1118640599519, whole genome shotgun sequence Length of sequence - 74261 bp Number of predicted genes - 70, with homology - 65 Number of transcription units - 26, operones - 15 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 49 - 399 396 ## gi|228469589|ref|ZP_04054581.1| transposase Orf2 + Term 469 - 504 -0.3 - Term 658 - 712 16.1 2 2 Op 1 19/0.000 - CDS 730 - 2187 1791 ## COG0772 Bacterial cell division membrane protein 3 2 Op 2 . - CDS 2204 - 4060 1870 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 4 2 Op 3 . - CDS 4072 - 4590 640 ## PGN_0868 hypothetical protein 5 2 Op 4 22/0.000 - CDS 4587 - 5462 856 ## COG1792 Cell shape-determining protein 6 2 Op 5 . - CDS 5505 - 6527 1285 ## COG1077 Actin-like ATPase involved in cell morphogenesis 7 2 Op 6 . - CDS 6552 - 8069 1677 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) + Prom 8122 - 8181 1.6 8 3 Tu 1 . + CDS 8349 - 8567 103 ## + Term 8633 - 8668 0.1 + Prom 8692 - 8751 1.8 9 4 Tu 1 . + CDS 8860 - 9132 525 ## COG0776 Bacterial nucleoid DNA-binding protein + Term 9199 - 9245 7.4 - Term 9183 - 9237 17.8 10 5 Op 1 . - CDS 9260 - 10618 1399 ## COG0534 Na+-driven multidrug efflux pump 11 5 Op 2 . - CDS 10641 - 12680 2277 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 12 5 Op 3 . - CDS 12688 - 13305 788 ## COG0353 Recombinational DNA repair protein (RecF pathway) - Prom 13326 - 13385 1.5 - Term 13352 - 13405 18.3 13 6 Tu 1 . - CDS 13433 - 14812 1971 ## COG3033 Tryptophanase - Prom 14840 - 14899 1.9 + Prom 14809 - 14868 1.9 14 7 Op 1 . + CDS 14968 - 15207 195 ## 15 7 Op 2 . + CDS 15491 - 16120 1001 ## PROTEIN SUPPORTED gi|228469534|ref|ZP_04054527.1| ribosomal protein L25, Ctc-form + Term 16171 - 16222 17.3 + Prom 16225 - 16284 2.6 16 8 Op 1 . + CDS 16342 - 17175 1282 ## COG0284 Orotidine-5'-phosphate decarboxylase 17 8 Op 2 . + CDS 17192 - 18220 1048 ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 18 8 Op 3 . + CDS 18252 - 19634 1675 ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase 19 8 Op 4 . + CDS 19652 - 20443 1018 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 20 8 Op 5 . + CDS 20492 - 22024 485 ## PROTEIN SUPPORTED gi|225093729|ref|YP_002662469.1| ribosomal protein S15 21 8 Op 6 . + CDS 22059 - 22754 806 ## gi|228469536|ref|ZP_04054529.1| hypothetical protein PORUE0001_0158 22 8 Op 7 . + CDS 22767 - 23393 734 ## gi|228469586|ref|ZP_04054579.1| hypothetical protein PORUE0001_0159 + Term 23443 - 23492 9.1 - Term 23446 - 23507 2.0 23 9 Tu 1 . - CDS 23707 - 24723 925 ## COG0117 Pyrimidine deaminase - Prom 24861 - 24920 2.3 + Prom 24531 - 24590 1.7 24 10 Op 1 . + CDS 24744 - 25652 271 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase 25 10 Op 2 . + CDS 25666 - 26163 613 ## BVU_0862 putative regulatory protein 26 10 Op 3 . + CDS 26187 - 26939 784 ## COG1040 Predicted amidophosphoribosyltransferases + Term 26942 - 26977 1.1 27 11 Op 1 . + CDS 27050 - 28027 946 ## COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein 28 11 Op 2 . + CDS 28011 - 29912 1735 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 29 11 Op 3 . + CDS 29909 - 31156 1595 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component 30 11 Op 4 . + CDS 31166 - 32080 515 ## COG4413 Urea transporter + Term 32173 - 32212 1.6 + Prom 32338 - 32397 4.2 31 12 Tu 1 . + CDS 32533 - 33537 1511 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 33596 - 33637 -0.0 32 13 Op 1 . + CDS 33732 - 35042 1184 ## COG0513 Superfamily II DNA and RNA helicases 33 13 Op 2 . + CDS 35050 - 35559 553 ## COG0622 Predicted phosphoesterase + Term 35721 - 35753 1.2 + Prom 35620 - 35679 1.6 34 13 Op 3 . + CDS 35761 - 37941 2114 ## COG2217 Cation transport ATPase + Term 37963 - 38016 14.5 - Term 38235 - 38288 18.4 35 14 Op 1 . - CDS 38353 - 40116 2246 ## gi|228469555|ref|ZP_04054548.1| redoxin family protein 36 14 Op 2 . - CDS 40149 - 40997 844 ## PG2173 outer membrane lipoprotein Omp28 37 14 Op 3 . - CDS 41039 - 42760 2108 ## PGN_0121 hypothetical protein 38 14 Op 4 . - CDS 42827 - 43318 781 ## COG0526 Thiol-disulfide isomerase and thioredoxins 39 14 Op 5 . - CDS 43347 - 44120 804 ## Fjoh_3203 Ig domain-containing protein - Prom 44196 - 44255 1.6 40 15 Tu 1 . - CDS 44577 - 44798 281 ## - Prom 44915 - 44974 1.9 + Prom 44818 - 44877 1.9 41 16 Op 1 2/0.000 + CDS 44939 - 46024 956 ## COG2087 Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase 42 16 Op 2 11/0.000 + CDS 46021 - 47025 1039 ## COG2038 NaMN:DMB phosphoribosyltransferase 43 16 Op 3 6/0.000 + CDS 47048 - 47833 938 ## COG0368 Cobalamin-5-phosphate synthase 44 16 Op 4 . + CDS 47841 - 48371 436 ## COG0406 Fructose-2,6-bisphosphatase 45 16 Op 5 2/0.000 + CDS 48364 - 49845 1470 ## COG1492 Cobyric acid synthase 46 16 Op 6 9/0.000 + CDS 49842 - 50861 714 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 47 16 Op 7 . + CDS 50863 - 51789 953 ## COG1270 Cobalamin biosynthesis protein CobD/CbiB + Term 51948 - 51992 3.1 48 17 Tu 1 . - CDS 51813 - 52058 125 ## - Prom 52130 - 52189 1.7 + Prom 51877 - 51936 5.4 49 18 Op 1 . + CDS 52158 - 53240 916 ## COG0618 Exopolyphosphatase-related proteins 50 18 Op 2 . + CDS 53273 - 53902 942 ## PGN_1188 hypothetical protein 51 18 Op 3 . + CDS 53976 - 55373 1720 ## COG1109 Phosphomannomutase 52 18 Op 4 . + CDS 55377 - 56858 1311 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 53 18 Op 5 . + CDS 56848 - 57327 309 ## COG2608 Copper chaperone + Prom 57346 - 57405 2.9 54 19 Tu 1 . + CDS 57632 - 58165 589 ## MAV_4740 hypothetical protein + Term 58189 - 58240 6.3 - Term 58181 - 58224 10.4 55 20 Op 1 . - CDS 58427 - 58957 602 ## gi|228469543|ref|ZP_04054536.1| hypothetical protein PORUE0001_0190 56 20 Op 2 . - CDS 59034 - 59558 713 ## gi|228469540|ref|ZP_04054533.1| conserved hypothetical protein 57 20 Op 3 . - CDS 59597 - 60103 692 ## PG0985 ECF subfamily RNA polymerase sigma factor - Prom 60225 - 60284 5.6 + Prom 60269 - 60328 6.0 58 21 Op 1 . + CDS 60361 - 60582 241 ## 59 21 Op 2 . + CDS 60606 - 61289 1101 ## PGN_0558 hypothetical protein 60 21 Op 3 . + CDS 61338 - 62951 1717 ## gi|228469587|ref|ZP_04054580.1| hypothetical protein PORUE0001_0194 61 21 Op 4 . + CDS 62967 - 64172 1403 ## PG0495 hypothetical protein + Term 64210 - 64259 16.1 - Term 64196 - 64247 13.6 62 22 Op 1 . - CDS 64264 - 65607 1790 ## Fjoh_3856 hypothetical protein 63 22 Op 2 . - CDS 65650 - 68646 3986 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 68693 - 68752 1.6 64 23 Tu 1 . + CDS 68993 - 69169 103 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 - Term 69222 - 69262 8.2 65 24 Op 1 1/0.000 - CDS 69289 - 70071 974 ## COG1624 Uncharacterized conserved protein 66 24 Op 2 . - CDS 70097 - 71005 1100 ## COG0294 Dihydropteroate synthase and related enzymes 67 24 Op 3 . - CDS 71088 - 72569 1726 ## COG0427 Acetyl-CoA hydrolase - Prom 72651 - 72710 2.3 - Term 72674 - 72718 4.3 68 25 Op 1 . - CDS 72750 - 72932 337 ## PROTEIN SUPPORTED gi|228469561|ref|ZP_04054554.1| ribosomal protein L32 69 25 Op 2 . - CDS 72948 - 73478 502 ## PGN_0187 hypothetical protein + TRNA 73704 - 73792 58.4 # Leu TAA 0 0 + Prom 73706 - 73765 80.3 70 26 Tu 1 . + CDS 73878 - 74259 483 ## PGN_1736 putative glycogen synthase Predicted protein(s) >gi|228308871|gb|ACLR01000034.1| GENE 1 49 - 399 396 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469589|ref|ZP_04054581.1| ## NR: gi|228469589|ref|ZP_04054581.1| transposase Orf2 [Porphyromonas uenonis 60-3] # 1 116 89 204 204 209 100.0 5e-53 MAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTARPHRALNKKTPMQMLIPDYPN PLTTQPSKKQISKNNSPKAPSLKAPSPCRLTPNKELSLCTSAVKTTTSRVPQQEQN >gi|228308871|gb|ACLR01000034.1| GENE 2 730 - 2187 1791 485 aa, chain - ## HITS:1 COG:TP0501 KEGG:ns NR:ns ## COG: TP0501 COG0772 # Protein_GI_number: 15639492 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Treponema pallidum # 55 481 45 430 433 166 30.0 1e-40 MPYLSKQRRSNLLMRLDWPLIILYLLMVAGGWLAICGATYDFTPSHLLEMGGRPMQQLIW ISLALVLGGVVLLIDEDLFESGAPYLYIGFILLLIVTAVVAPDIKGSRSWLVMGPIRVQP AEFAKLGTALMLAYWLNRPEFKLTTLRGYLEVFAIILLPMAIIILQSETGSALVFCAFFL ALYREGLSGAFLLLASLAVTLFVVALMLADVSWGATDASRLLICSIISVATILYLSSIVR WKPRERRILWIVSIAYFVGMYVSLRWLLIDYSYVALALMSCIILFCFIRALLHYSRSYLL VGIASLGLLAFSLSVEYVYNDILAPHQQMRIAVSLGIEQDPRGAGYNVDQAKIAIGSGGL LGKGFLQGTQTKLKYVPEQDTDFIFCTIGEEQGFAGSVGLLLLFLTMILRIMWRAEQHPS TFGRVYGYCLACVFIFHLMVNVGMVLGLVPVIGIPLPFFSYGGSSLWGFSLMLALFLKID ASGKR >gi|228308871|gb|ACLR01000034.1| GENE 3 2204 - 4060 1870 618 aa, chain - ## HITS:1 COG:RSc0062 KEGG:ns NR:ns ## COG: RSc0062 COG0768 # Protein_GI_number: 17544781 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Ralstonia solanacearum # 7 610 15 644 801 256 31.0 9e-68 MERPHRRLRIAVLPLIAIGIVALYITRLGYLQLVSTEYKERAMHNALYEEVIFPDRGVIY DRKGTLLVYNEPAYDLLVTTKELADTLDTPLLASLLHTSEQELDERMTALRDRSINPGYS PFTPQLFWSQLTSEEAGFIQEQLFRLPGFTLRPRAVRRSDQPNAALLLGYLGESSPEELK ADSTLALGQYVGKSGVERTYDKLLRGRNGVNLLLRDARGRIQGSYNEGADDIEAIPGEDL TLSIDIGLQSLGEKLMQGKRGAIVMIEPKSGEVLCLVSSPTYDVRMLQGKSLGKAHQQLI LQEGKPLFNRAIMGTYPPGSTFKPAMGAVMLQEHLVTTSTLLSCARGYPRMRGRPACHGH ASPLNLRSALTTSCNAYFCWGLHFLLDDRSRYPSVQDALNKWRDYMVNFGFGYKLGIDLA GENRGFIPNSSVYDRVYSRWNSSTIISLSIGQGEVLLTPLQMANLASIIANRGYYYTPHV VRKIEHTPLDTLFTTPHHTMVSPDYWEEIAQGMHGAVLAGTCRRANFAPGEINVCGKTGT AENRFGKDHSAFIGFAPLEEPKVAISVYVENGGFGAIFGVPIGRVMMEYYLRDGQLSGAS QAIAEQISRQKIFYSHDL >gi|228308871|gb|ACLR01000034.1| GENE 4 4072 - 4590 640 172 aa, chain - ## HITS:1 COG:no KEGG:PGN_0868 NR:ns ## KEGG: PGN_0868 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 19 167 18 166 172 92 42.0 7e-18 MRLQMIWTTLGIVLLVLLQVEVFNYIQLFRYATPSVYLFALLLFSVDTPKEWLTLVGALV GLSVDLLSGTPGLHMAALTLVGFLRNYLLAPAVDIESNLRRAPSMRIHGWGIWLVILEMV AIHQFILFTLDSLGGFDWEYYALRLGSSMLLTYLIVMILQMLFLEHLPRHQS >gi|228308871|gb|ACLR01000034.1| GENE 5 4587 - 5462 856 291 aa, chain - ## HITS:1 COG:CAC1243 KEGG:ns NR:ns ## COG: CAC1243 COG1792 # Protein_GI_number: 15894526 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Clostridium acetobutylicum # 59 279 66 278 283 66 22.0 5e-11 MRRLLELLRANLHWVLLVVCEAIALLLLFHGSLYHSFVGAAASSSVVGRIHSEGARWRSY LSLQQENQQLTAQLASLEGRYLALQRQFEYLLADTVVPQVLTPLDSLDTIVREEPNFTFV TARVVSLTYLKANNMMTIDRGARDGIKPNMGVVSQSGVVGIVAQVGPRYATVVPLINESL TLSCMTLREGHVGDLSWRQKLSPEEGIVRGLPKHAHLAVGDTLVTSGYSAIFPPGMMIGR LEGNGAQGTRITYRKELPVLLATDFGQLHHVYVITGGNTINLEEQASREEL >gi|228308871|gb|ACLR01000034.1| GENE 6 5505 - 6527 1285 340 aa, chain - ## HITS:1 COG:CAC1242 KEGG:ns NR:ns ## COG: CAC1242 COG1077 # Protein_GI_number: 15894525 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Clostridium acetobutylicum # 1 333 1 330 335 271 44.0 1e-72 MGLFKLRQELAIDLGTANTIIMKDGKIVFDEPSVIAFDRRNDEVIAVGTKAREIYEKGHE YIRSVRPLRDGVIADFDAAEKMIRGMVKQINKKSHSLFSPSLRMVVSVPSGSTEVEIRAV KDSSEHAGGRDVYMLYESMAAAIGIGIDVLAPEGNMVVDIGGGTTEIAVISLGGISSKQS IRVAGDEFTHDIMEYMRQKHNVRVGERTAEQIKIEVGSALAELDNAPEDFVVTSADLMDS LPRQISVSYQEIAQCLDKSIVKIESAILRTLESTPPELYTDVTQNGISLTGGGALLRGLA ERLTRRFAIQFNVPEDPLRAVAMGTDKALKNVDSYNFLIH >gi|228308871|gb|ACLR01000034.1| GENE 7 6552 - 8069 1677 505 aa, chain - ## HITS:1 COG:aq_1963 KEGG:ns NR:ns ## COG: aq_1963 COG0138 # Protein_GI_number: 15606962 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Aquifex aeolicus # 8 505 2 506 506 438 47.0 1e-122 MTTRPIRRALISVYHKEGIDRIAQILHAAEVEIVSTGGTQEYIESLGIPCTAVESLTALP SILGGRVKTLHPMIFGGILARRDNAHDEEQVAQYALPLIDLVIVDLYPFAETVASGASEE EIIEKIDIGGISLIRAAAKNYHDVLICSHRDQYDGLIDLLERDGCTTTLPERRSYALRAF EVTATYDSDIFNYFDAGAHTALHLSGRNPRVLRYGENPHQMGFFYGDLDHYFDKLQGKEL SYNNLQDLDAAVHLIQEFEAPTFAILKHTNPCGVASRETISEAWQAAYEADTESPFGGIL VANRPIDQQTAEQISHIFFEVLIAPDFDTEALQILGQKSKRILLLQKAPLPDQDSVRSAV GGYLVQTPDVLSEPVVYTSVTETTPTEDEMADIRMAESIVKYCKSNALAIVRDSQLLATG IGQTSRVSALRQAIQKAHNFGFDLKGAVLASDAFFPFRDCVDLAAAAGITAIVQPGGSIR DQESIDACNEQGVAMVTTGVRHFRH >gi|228308871|gb|ACLR01000034.1| GENE 8 8349 - 8567 103 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTADHRHSAHTSEEIENLQRANKNPPRSNKKILPNFDLLLPKFHFILPNFYFPAPWRIFV CSLETSYFLRRN >gi|228308871|gb|ACLR01000034.1| GENE 9 8860 - 9132 525 90 aa, chain + ## HITS:1 COG:SA1305 KEGG:ns NR:ns ## COG: SA1305 COG0776 # Protein_GI_number: 15927054 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 85 1 85 90 77 51.0 4e-15 MNKTDFIKTVADKAQLTQKDTKAVYEAIVETIHEEMKKGERLTLVGFGSFYVSQRAARKG INPRSGKTIDIKASKSIKFKPSTALDINKK >gi|228308871|gb|ACLR01000034.1| GENE 10 9260 - 10618 1399 452 aa, chain - ## HITS:1 COG:VC1540 KEGG:ns NR:ns ## COG: VC1540 COG0534 # Protein_GI_number: 15641548 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Vibrio cholerae # 17 443 15 440 461 158 28.0 3e-38 MSWSTYYRSCQEHFRPLLRLGLPVIIGQVGLILVGFADNVMVSHHSLSELAAASFVNNFL NLVIIFGMGFSYGLTPLVATNKEWGRSDQVAHYLGHSFLLNLLIALLIGGGLFLLEGSLG AFNLSEELRPIALPYYRIQILGFMVVMLFNTFKQYTEGMGDTQIPMYITLAGNVLNIGLN YLLIYGKGGFPEWGLYGAGLSTLVSRVVMLIAIVAVTVLLPRYRKILDRVKSLHWSWREG LVPLLRLGTPVALQMGMEAASFSVAVILVARISTAALAAHQIIATISTLGFMVYYGIGAA TAIRSSTLLAQGERRETRYVASAGVYLCLFVAAVMMPLLVLCREPVVRLFNADLSVAEAT YLALIPLCLYQIGDALQIVYANTLRGISRVAMLAPAAALCHLIVAPTMAWLFGFGVGLEG NGPQLMGVWFAFPVSLTLLGLILRYSFRRATR >gi|228308871|gb|ACLR01000034.1| GENE 11 10641 - 12680 2277 679 aa, chain - ## HITS:1 COG:TM0100 KEGG:ns NR:ns ## COG: TM0100 COG0272 # Protein_GI_number: 15642875 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Thermotoga maritima # 3 674 7 663 688 505 40.0 1e-142 MTPNSTELEIEQLRKTIEQHNRAYYLDNAPTISDADYDALMQRLLTLEAEHPEFADPTSP SLRVGRDRNDAFVQVAHEQPMLSLSNTYNYDEIAEICKRTDTLLATDDVPWVAEMKYDGS SISLIYEEGVLARAVTRGDGTLGDDVTVNVRTIQSVPLRLHSIAGHPDYTRGRIEVRGEV LLPFKEFERLNGERTAESEAPFANPRNAAAGTLKTLNSRIVAQRRLLCICYYLYALDDET RLPDSYYERMKLLEEMGFDTGVAPFKSSDLSALYHYIDEWDVQRGDLPYATDGIVLKVDS LTQQRVLGNTAKSPRWAFAYKYQPENARAELLSVDYQVGRSGIVTPVANVEPVLISGTVV RRATLHNEEFIKSLDLHYHDYVYIEKGGEIIPKITAVEPSLRRPEAEPVRLPERCPACGA PLQQIDGSVGYYCVNSYACPPQIMGRIEHYCTRRAADINVGPETIDALFDRHLIENIDDL YKLTASDLAQLPNFKEKSINNLLASIEQSKGRPFARLLYGIGIRFVGEGTAKTLARHFQS IDRLAQATAYELQALPDVGPKIAEQVVYFFSLERNQQLIAELQRCGVRLEECAEEATDMP QSNRLEGERIVISGSFTQHSRDEYKQLIEQHGGTNVGSISSRTTFVLMGSDMGPSKRAKA EQLGIPLVTEEEFLARLNS >gi|228308871|gb|ACLR01000034.1| GENE 12 12688 - 13305 788 205 aa, chain - ## HITS:1 COG:slr1426 KEGG:ns NR:ns ## COG: slr1426 COG0353 # Protein_GI_number: 16332099 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Synechocystis # 10 198 42 229 232 180 46.0 1e-45 MKDQYPSQWLERAVDQLSLLPGIGRKTAMRMALHLLRQPPSYAQHLGEAIIDLRQKICYC ERCHCISDSPLCDICSDPQRDQSTVCVVEQVKDVLTIEQTHRYKGLYHVLGGIISPIDGI TPNDLEIESLYERVQEEPVREVILAIRSTLEGDTTNYYIYKRLESTGVLVSLIARGISIG DEIEYADEVTLGSAIANRTPFDQVK >gi|228308871|gb|ACLR01000034.1| GENE 13 13433 - 14812 1971 459 aa, chain - ## HITS:1 COG:PM0811 KEGG:ns NR:ns ## COG: PM0811 COG3033 # Protein_GI_number: 15602676 # Func_class: E Amino acid transport and metabolism # Function: Tryptophanase # Organism: Pasteurella multocida # 6 457 6 456 458 471 50.0 1e-132 MEIPFSEAYRIKMVEPIHKSTREQREQWIRQAHYNLFSLKSSQVFIDVLTDSGTGAMSDR QWAGIMVGDESYAGASSFQNLKDAVEKICTFPLVIPTHQGRAAENVLYSATLKEGDIVPG NSHFDTTKGHIEFRKAVAVDCTIDAASNTELELPFKGEMDLNKLEDCFKKYPKEQIPMCV LTVTNNTAGGQPVSMKNVRETSELCHKYGIPLQIDGARFAENAYFIKTREEGYADKSIKE IVREMLSYADIMTMSSKKDAVVNMGGFLAMRDEELYHKCSMYAVMNEGFLTYGGMNGRDM NALAIGLDENTEFDMLDTRIRQVAYLGSKLDEYGVPYQRPAGGHAIFLDAKKILTHVPKE EFIAQTLGIELYLEAGIRGVEIGSILADRDPKTGENRYPKLELLRLAIPRRTYTNNHMDV IAAACKNVYDRRESITRGYVITRELPVLRHFTVELEPAK >gi|228308871|gb|ACLR01000034.1| GENE 14 14968 - 15207 195 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MATMHSDTLRSPRRHTSEEIENASVENENPPRRNRKIHRNFDLLLPKFHFILPNFYFPAP WRIFVCSLEISDFLGGYRI >gi|228308871|gb|ACLR01000034.1| GENE 15 15491 - 16120 1001 209 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228469534|ref|ZP_04054527.1| ribosomal protein L25, Ctc-form [Porphyromonas uenonis 60-3] # 10 209 1 200 200 390 99 1e-107 MKHFNLSATVRQADQLGKKATKALRREELVPVVLYGGSETKHLVVKADDLNKLIYTPEIY LIELDVEGKQHKAVLKDVQFHPVSDKTLHADLYEVSEEKPIVMRVPVILEGHAIGVRAGG KLVREKRTLRVRAIYDKIPENLVIDVNNLKLGKTIQVHELSFEGLELVDAPQAVVCGVKL TRAARGKGVADAAGDESEEHGDSEEQSNE >gi|228308871|gb|ACLR01000034.1| GENE 16 16342 - 17175 1282 277 aa, chain + ## HITS:1 COG:RSc2773 KEGG:ns NR:ns ## COG: RSc2773 COG0284 # Protein_GI_number: 17547492 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Ralstonia solanacearum # 4 265 22 285 288 188 41.0 1e-47 MNREQIIAQIRAKRSYLCVGLDPDIQKLPPHLLKGDNPILDFNKAIVDATAQYAIAFKLN LAFYETLGAFGMQVFGDTVDYIRQRYPEQLIIADAKRGDIGNTSKMYARAFYENFKVDAL TVAPYMGSDSVLPFLEYSDKWVILLALTSNQGAQDFQMLHTGEETCLFEQVLQTALSWEG ADHIMFVVGATQSNLMERVRAVAPNAFLLVPGVGAQGGSLEAVAEHAMTSDCGLIVNSSR GIIYAGNDERFASAAAQAASDLARQMERTLIDKGIID >gi|228308871|gb|ACLR01000034.1| GENE 17 17192 - 18220 1048 342 aa, chain + ## HITS:1 COG:PA3646 KEGG:ns NR:ns ## COG: PA3646 COG1044 # Protein_GI_number: 15598842 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Pseudomonas aeruginosa # 2 341 7 344 353 221 39.0 1e-57 MYTVADIAKLIGGTLEGDGTAQLQGFAGIEQAKAGDLSFLANMKYEPFLYTTHASAVLVD EKFTPTQPCPTTLIRVANPYETLSQLMRLYVSQQEPRWTGVHPTAIVDPSVTIPKECIIG PYACIEADVKLGEQVVISAHCVIGTNCSIGDHTTLHPRVTLYSDSVIGHHCRIHAGTVIG ADGFGFAPTEHGYDKIPQIGHVEIGDNVEIGANSCIDRATMGVTRIASGVKIDNLVQIAH NCTVDEHTVIAAQAGLAGSAHIKEWCQLGGQVGIAGHLTVGDHSQLGGQTGVLGNLQPHS VVMGAPAMPVGKALRAFAMLPKLPELMRRVDKLEEQSSSETK >gi|228308871|gb|ACLR01000034.1| GENE 18 18252 - 19634 1675 460 aa, chain + ## HITS:1 COG:alr2270 KEGG:ns NR:ns ## COG: alr2270 COG0774 # Protein_GI_number: 17229762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Nostoc sp. PCC 7120 # 1 295 1 275 280 168 34.0 2e-41 MNQYTLATTLTFQGVGLHTGANRTLTLSPAEPHSGYQICRSDLETHPVIPAYADYVSTTQ RATRIERGAVQVSTLEHCLGALYALGVDNCLITVDGDEAPILDGSALPYVQAIQEAGLKE QDAAREVFVVRKPIEVKDEETGASILLLPSDQLGVEAHLSFASPLLSNQYASLRDLSRFG EEVAEARSFVFVREILPLLSQGLIKGGDLANAMVINDEPLSESDAKALAEALHRSVTEVT QLGVINPKEGIPNEPARHKIIDILGDLALAGIFVQGHIIATKPGHKINNKLARAIRKEIK GMETQPPVYDPNATPVLDLNQIKGLLPHRYPFLLVDKVIHLDKNHIVGVKNVSFNETFFL GHFPTEPVMPGVLIVEAMAQTAGLLVLSGIEDPERYSTYFLTINNVKFRNKVVPGDTLLF KVMLTSEVRRGLASVRGLTFVGNQLVCEADFMAQIVKNKE >gi|228308871|gb|ACLR01000034.1| GENE 19 19652 - 20443 1018 263 aa, chain + ## HITS:1 COG:PM1996 KEGG:ns NR:ns ## COG: PM1996 COG1043 # Protein_GI_number: 15603861 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Pasteurella multocida # 6 259 2 262 262 192 39.0 6e-49 MAQTHISPLAQVHPDAQLGAEVTVGPFVTIEANTVIGDRTVLDQGCIIRSGARIGSDCHI HPYAVIAGIPQDLKFRGEETTAVIGDHTTIREFATVNRGTASRGTTIVGSNCLIMAYSHV AHDCVLKDHIILGNATQLAGEVEIDDYAILSGAVLVHQFVRISQHVMIQGGSKVTKDIPP YCLVGRDPIVYCGINIVGLRRRGFTNEQIFLINDVYRTLYQGGLNNSEALVEIQNRYPQS YERDLIYDFISDSKRGIVRGSMD >gi|228308871|gb|ACLR01000034.1| GENE 20 20492 - 22024 485 510 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225093729|ref|YP_002662469.1| ribosomal protein S15 [gamma proteobacterium HTCC5015] # 13 508 10 495 497 191 30 1e-47 MKKILVGRQWGTTDSYILERDHLSIHDLVERVAQRFVAELRSISDLPQGITYVFAGPGNN GADGLAIARRLLQDGHRVHCYLFCKQEEELSEACAWQETKLQEFHQDALTIVADEFQPPL LTAQTLVIDALFGTGLSRPLEGGFAVLVDQLINASPATVIAVDIPSGLYDKDNSENNLQA IIKADYTLTCESPKIALLLSDNECYTGALRILSLCLNMDDDPAIQADYYLYTPQDAHRAL KPLSHFAHKGTQGHALLIAGSEAMAGAPMLAGMGAMRSGLGKLTMHLPSALARLANTLLP EALVEKDKEETIVSSLPKDLLNYQAIAMGPGIGTAPLTLHLLEHLLQNIQPATPLLLDAD ALNLLALHPELLSVLPKDTILTPHPGELDRITGNALDDHHRLTKAQELAMEQEIIIVLKG ANTATCLPTGEVIFNSSGTPALATAGSGDVLTGIILSLLAQGYTPAEAAPLGVYIHGLTA NHYGERHSPRGMIARDIADMLPAVLKMVEQ >gi|228308871|gb|ACLR01000034.1| GENE 21 22059 - 22754 806 231 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469536|ref|ZP_04054529.1| ## NR: gi|228469536|ref|ZP_04054529.1| hypothetical protein PORUE0001_0158 [Porphyromonas uenonis 60-3] # 11 231 1 221 221 363 100.0 4e-99 MKHLRHQCLLMLTALLCLLVSLLSCSKRKTAEELLQEAIVQQYQSVGKLLLTETTLQKAV TLQDPKISFYDISSFKDFTKWLSNQTKIGNRVGIYSFDATLVSYTDLTDFSADDVTYDKD QQRLTLYISPIQVELRGRDFTLRTEYEYVAPLRNAITPQDRARVKERAYQVLQQEITAND QLIAQIRQRSIEKLRRWLTQLLLSYDLPPTVTIVERGSALVPPNTQTSSPL >gi|228308871|gb|ACLR01000034.1| GENE 22 22767 - 23393 734 208 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469586|ref|ZP_04054579.1| ## NR: gi|228469586|ref|ZP_04054579.1| hypothetical protein PORUE0001_0159 [Porphyromonas uenonis 60-3] # 1 208 1 208 208 379 100.0 1e-104 MGKWFKRILYIIIAILLVIGIVSLWRSCSKSKTEDYSDVVTHAMTVRSIEEILKLSTGEC YQEVPMVDTIDGMVLAYVIQARTYIDFDLDKLPTQVVGDTLYVQLPPEEVTPHEIGYNVI DVHPLRKGFTMPTLTAEQENRAKRRVPQRLINEVYRSGYIRNARQQAREELARFLSVAYP TVIVVDRYPDGVRDTFFADTVYIDHRQM >gi|228308871|gb|ACLR01000034.1| GENE 23 23707 - 24723 925 338 aa, chain - ## HITS:1 COG:BH1554_1 KEGG:ns NR:ns ## COG: BH1554_1 COG0117 # Protein_GI_number: 15614117 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Bacillus halodurans # 10 150 3 139 143 147 54.0 2e-35 MKRTAPTTPDEIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEV MAWRSVPEELRGLVGEATWYVSLEPCAHYGKTPPCAELIAGLRPARVVVAMLDPFAKVDG RGVARLREAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDAS EAPYIFSSPLRQRSVHRLRGLHDAILVGHHTAELDDPLLTNRSGCGGQPIRLLWCHSRLP RPELRMLQDATARTIILLPPTLMAQVPDGQYPPHVSCLATTGEVRDLLTLLRSQGIESLL VEGGAQVLQRFLDSGLYDELNVEHAPVELHDGVPAPNV >gi|228308871|gb|ACLR01000034.1| GENE 24 24744 - 25652 271 302 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 11 299 21 288 294 108 33 6e-23 MSEAMIVAGMTLCDAALAIAEALPAYYVETRERQAMSEMLLQHITKLSQTNYLLDRKVRQ LSDTEATWLCQALERLTHDEPIQYIVGVAPFGSFDLTVGRGVLIPRPETAELCELILARH PATEAPQRLLDVGCGSACIPIYIGSERPQWSLYAMDQSEQALGYAEQNVRQTGVAVQLFR GDLFAWCQGKGIPAKLPPINLLVSNPPYIPECDQATMRPNVLVGEPREALFVPDADPLRY YRALVALVPQIRSPQAPLTLYCETHHQLAHEVAALCEQAGAISSEVLKDLTGRERFVQAT FQ >gi|228308871|gb|ACLR01000034.1| GENE 25 25666 - 26163 613 165 aa, chain + ## HITS:1 COG:no KEGG:BVU_0862 NR:ns ## KEGG: BVU_0862 # Name: not_defined # Def: putative regulatory protein # Organism: B.vulgatus # Pathway: not_defined # 2 148 7 152 161 65 30.0 9e-10 MDTDILNKAKYYCARAERSPRNLRLFLMRREVPSDEIDEYLALLQEGRYYDPQRYAESYA RTRYRDMSQGPHKIRQALRMQEVPTEIIEAVLPEILEEEEPNYSLAELLESKLRRTSART PRALFDKMMRYGVGRGYHQSEVYEALQEVLQRMREEEEDNELEEE >gi|228308871|gb|ACLR01000034.1| GENE 26 26187 - 26939 784 250 aa, chain + ## HITS:1 COG:alr2926 KEGG:ns NR:ns ## COG: alr2926 COG1040 # Protein_GI_number: 17230418 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Nostoc sp. PCC 7120 # 23 230 4 205 229 81 29.0 2e-15 MSHKPTKSPSAGRIAPPPPQGWWTTARESLLQLLYPRWCPVCHTLLPPNAPPLCLTCQGA LGRYHEHTVGALDRLRGAQPMPRRILAPYLYARDDAMAQIVHDIKYHGNKPLARYMGRLM GTLLPLKQEQIDYVIPVPLTLARELERGYNQATLLAEGISSVTGIPYLAHALRRTRFQGS QTHRDRTHRLEAMLGSFTLGSEVIPPDSHILLLDDVLTTGATLTAALNALADIPLAQVSV GVLAVGTPTA >gi|228308871|gb|ACLR01000034.1| GENE 27 27050 - 28027 946 325 aa, chain + ## HITS:1 COG:YPO2922 KEGG:ns NR:ns ## COG: YPO2922 COG4623 # Protein_GI_number: 16123109 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein # Organism: Yersinia pestis # 144 308 286 443 486 88 34.0 1e-17 MNSSQMDEIRRDPTRWRRLLRYITWSLWGAVLVGIVYYFVVVYRAPQAEPDHAHVTPQTE WRDVPIAEVGAGEEYQILEQYADLYLLEYVLLYDPLCSWADLDDEDDDEDDEEELVQTRQ RGSSSVSHGESQEHYDQSERLPGIVSDWDHLFQRYGSKYGWDWFVLAAIAYQESKFRTEV VSQGGATGLMGIMPATGRRYGYSRAKLKHAESSIRVACMALQDFGRSFAHITDSEQRMKF TLASYNSGSAHVLDARRLAENAGLDPDRWDDSVEIFMARLSEPKYYNDPLVQHGRANGDH TVRYVTEVFSRAQSYKSKVQYATTK >gi|228308871|gb|ACLR01000034.1| GENE 28 28011 - 29912 1735 633 aa, chain + ## HITS:1 COG:sll0912 KEGG:ns NR:ns ## COG: sll0912 COG0488 # Protein_GI_number: 16331003 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Synechocystis # 1 627 3 633 636 447 43.0 1e-125 MLQLNNVSLSFGNRVLFTDISLSLLEGDKVGLVGVNGTGKSSLLRIIMGELEPDSGTITR RNGLRIGYLSQQHRFAEGVRVIDAVFSPHDPTAHLVGAWQSAVERGDAEAQERLLPDMDR LSAWQYEQEATAILHALRITDVERPMELLSGGEVKRVALAGVLLQQPDLLILDEPTNHLD LEVIEWLEGYLSRSRLTLLLVTHDRYFLDHICTRIVEMDQQQLYSYEGNYETFLTKRQER LEQMAQTSDRLANIYRQELVWMRATPQARGGKQRARKEHFAELSSELSKARQILREQTTI EPLHSSVRLGKQVIELEGVSKSFEESKPLVRYFDYIFSRRDRVGIVGPNGCGKTTLLKMI IGELEPDSGSVLIGETVQFGYFGQKLPSYAPDKRVIDIISDIASHITDPVTGQSVSATQL LQRFLFTSDRIYTPVSLLSGGELRRLYLCTVLMASPNLLILDEPTNDLDITTLGVLESYL SSFEGVLIIVTHDRYFLDKLVEHLFVFEKGGHIRDFPGNFTQYRLQQEAEVQQATEQAAT RESKSAAPVASQATRQGNRKKRRSYREEQEFQQLEQQIPQLEGRIAELERRMSSGSLSNE ELIKAGEEIAEAQQEMEQASERWFELAAIEEEA >gi|228308871|gb|ACLR01000034.1| GENE 29 29909 - 31156 1595 415 aa, chain + ## HITS:1 COG:BMEI1139 KEGG:ns NR:ns ## COG: BMEI1139 COG4591 # Protein_GI_number: 17987422 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Brucella melitensis # 14 415 20 422 422 87 22.0 6e-17 MRLRLPIWLARQLYSRENRRHSKVYALVRFAIPAIALSLAVMLLGIAIMDGFQYSVRDTV RLVTGDVILCEYGKQPIDLDNVITLTPQMTQRMNEMPEIVSVRPVRTAVGMIKTDSTYQG VAVTGVDDFTFLEPLCASGNLSDTTLAEGANPIVLPKASAQKLGLTIGDKVVLYFLGDKV SVRSFTLIAILELTNTAQPLAYVTNDLLGRVGGWQPNQYTRIEILAKNTDRSLLDMETSL SDKLIQSLSEPGVTHETLGIYTGTQINGGVYQWIDSLRPNVQILLVLMALVAAFTMINAL LIIILDLTQTIGLLKALGMTYRSLTTMSLAIALRIIVWGMLWGNLLAGIIIWSQHQWQWL TLDPNIYYISHVAMRIRPMAWIVVNVATLLLCLILLLLPARIIQRISPTTALRFE >gi|228308871|gb|ACLR01000034.1| GENE 30 31166 - 32080 515 304 aa, chain + ## HITS:1 COG:SA2081 KEGG:ns NR:ns ## COG: SA2081 COG4413 # Protein_GI_number: 15927867 # Func_class: E Amino acid transport and metabolism # Function: Urea transporter # Organism: Staphylococcus aureus N315 # 21 288 4 287 301 98 29.0 2e-20 MPQGSTAPQRGSYIQTFYQEIKTLLLGFSQVFLLQSPLSGVLILAGLFCNSWQLALLALL GCLVSRAAASLWRDTKSEIADGLYGFNGTLVGIAIGVYWEISWLSLLLLVIGAALSTWLA RAFRRHAQLPGLTAPFIIAVWVLLLVSLLAPQGVGLIDSVTKLEEGQPLWRTLGVALGDS VGQVMFQANVLTGLLFFLAIAWESRRKALYALLGALVPMLVIPFVPEAVWREGLLGYNAV LCAIYWAGSGERRLLYALLSVVLSVLLELLALYTGLIPLTAPFVLSVWGVVQAQRWGKGR ADAL >gi|228308871|gb|ACLR01000034.1| GENE 31 32533 - 33537 1511 334 aa, chain + ## HITS:1 COG:VC2000 KEGG:ns NR:ns ## COG: VC2000 COG0057 # Protein_GI_number: 15642002 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Vibrio cholerae # 3 331 4 331 331 463 71.0 1e-130 MTKVGINGFGRIGRLVFRASMKRDDLEVVAINDLIDVEYMAYMLKYDSVHGRFDGTVDVQ DGMLVVNGRKIRVTAEKEPRLINWGAAGVEYVVESTGRFLTKELSQGHIEAGAKYVVMSA PSKDDTPMFVTGVNLEKYVRGTQFVSNASCTTNCLAPLVKVLNDNFGVEQGLMTTVHAAT ATQKTVDGPSLKDWRGGRSAIGNIIPSSTGAAKAVGKVIPELNGKLTGMSFRVPTMDVSV VDLTVQLKRGASYDEICAAMKKASETNLKGIMEYCDELLVSQDFVSDPHTSIFDAKAGIA LTDTFVKVVAWYDNEWGYSNKVLCLIAHMAEVNK >gi|228308871|gb|ACLR01000034.1| GENE 32 33732 - 35042 1184 436 aa, chain + ## HITS:1 COG:RSc0539 KEGG:ns NR:ns ## COG: RSc0539 COG0513 # Protein_GI_number: 17545258 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Ralstonia solanacearum # 1 428 1 426 540 267 37.0 3e-71 MDFYELDLEDEVLDGLDAMNFVETSPIQSETIPPLLEGRDVIGCAQTGSGKTAAYLLPFL NKVARQELPKEHLGAVVMAPTRELAKQIDQEVEGFGYYVSVSTLAIYGGTDGIAWEQQRR GMALGADIVIATPGRLLSMLRLGACDLSHVQYFVLDEADRMLDMGFYEDIMEIYKALPED CQHVMFSATMPKEILKLSESILVDPVLVELAVAKPPKSIMQTAYICYDAQKLPIIRSLFA NPESEVSRTIIFAGTKATVHALAQTLTRDGLPVAEMHSDLSQERREEVLRDFRMGRIKVL VATDIVARGIDIDDIAVVINYEVPHDFEDYVHRIGRTARGADGKGLAITLVSPSDQQDFA RLEQFLEQEIYRIPLDPSLGEAPTYAPNERTHSRGSSRGKGNGRGRSQGKGRGKSQGKGR SSQRKGRSSGRKGSKQ >gi|228308871|gb|ACLR01000034.1| GENE 33 35050 - 35559 553 169 aa, chain + ## HITS:1 COG:PA0351 KEGG:ns NR:ns ## COG: PA0351 COG0622 # Protein_GI_number: 15595548 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Pseudomonas aeruginosa # 6 139 9 130 157 73 35.0 1e-13 MKAQQRIGILSDTHGYIDDQICKALAECDLIFHAGDIGSPQVLERLQAIAPTLAVYGNID DAALHAQLPEVVHTEVAGVELVMTHIGGYPGHYERIFAPYLTPWHEHPMITISGHSHILK VMPDKSRPGLLHINPGAAGRSGWHQSRTLIRLQITAGRPHNLEVVEWPR >gi|228308871|gb|ACLR01000034.1| GENE 34 35761 - 37941 2114 726 aa, chain + ## HITS:1 COG:SA2344 KEGG:ns NR:ns ## COG: SA2344 COG2217 # Protein_GI_number: 15928136 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Staphylococcus aureus N315 # 5 721 73 792 802 405 35.0 1e-112 MKQTTEYIPIVGMHCAGCAAAVTNKLQGVTGVLEATAQIDTHSLYIVYDAEQITREQIAE QVASLGFSLILTTDETEAVSQALEQERRSARQLAWRTAIGAALTIGVMIWMYLLGAIGER WVAPLVALVAYLYVAGPFHWRAVKQLRRGVMGMDTLVSLSTTCSVIGLLLAYGAEGHQLH LYLDALVMIPAFVLIGKWLEQRATASTARALRALLDLTPREASLVVGEETRRVPLQLVQP GMTVRVRPGEAIPVDGVITSQSVTHINEQTITGESEAVSRGEGDKVFAGTICLSTAIEVR AESVGADTALGHIVSTVRKTLADKPPLRLLADRIAQYFVPAILFLGLLTFALWYWVVEPG ALDLAARYAISVLVIACPCALGLATPTALTVAVGESARRNILFAEATALETLPRVNAFLM DKTGTLTLGRPSVTELQWFVPEEERMAKLSLIVSAEQHSLHPLAQAIVAYGEAQGATISE LTVTEQPGQGLLVTTPEGELRIGRASWIAEGGVASIPPCDLTGSLVYVAQGAQLIAIIAL SDTLTPHAAETIAQLKAQGKKLLMLTGDREPEAQRIAQQIGIDTVHAELMPQDKETILAS LQEQGHIVAMVGDGVNDGQALARADVSIALAGGSDLATSMAQLVISKPDLSLLVEATEIA RQTVRTIRFNFLWALLYNVIAIPIAAGLFTRWGLAITPAIAAAAMALSSICVVVNSLLLQ RRIASK >gi|228308871|gb|ACLR01000034.1| GENE 35 38353 - 40116 2246 587 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469555|ref|ZP_04054548.1| ## NR: gi|228469555|ref|ZP_04054548.1| redoxin family protein [Porphyromonas uenonis 60-3] # 1 587 1 587 587 1152 100.0 0 MNKLITRLALSITLVGGMLLPATQATAQQEVSMQELQLIQPSGLRAVKPLVNDKANLMVD LKTSQYKAKDINGKEYDIDAILNSGKLILFDFSASWCGPCWAVHSAGILDKLYEKFGPKG TDQIVVLWVEASGEPIEAIKGDKTKFNRNKTQGDWTKDPDGKPVPYPIISDSKLHATLGI DVIGFPTLALVGKNKWIQCWSELITKDPEFPDFVDLMDLFVDENSAPKTVSFQGPKEFYQ GESLTMRLFYRSVAPTTEVKWEAPEGVTLKKVNDEEYTVSVNKVGTYELKATVTNKNGSA TGKTTITVSKPIDTFPFEARMDTKDKLDKGWRSIDNDGDGLGFESFSGQGFLERLGLTFK KKIGAENSDDCLISFGTFYPNKVKTNSKGQLTGFEGLTIKPDNVLLSAPLVIPADVAKPT FSCYISSFFNATKADQLKVMVSELNGTPVELIAPQNANSEDWTLISADLSAYKGKTIQLS LVPVVNGSSAILVDQLRVTMDGKTDVEAPTLSLETTLYPNPASDYVTVRTRVGSTIELFA ADGTMLSTTQATGERTTIALAQLPAGRYIARITSLEGEVVFRPLIIK >gi|228308871|gb|ACLR01000034.1| GENE 36 40149 - 40997 844 282 aa, chain - ## HITS:1 COG:no KEGG:PG2173 NR:ns ## KEGG: PG2173 # Name: omp28 # Def: outer membrane lipoprotein Omp28 # Organism: P.gingivalis # Pathway: not_defined # 16 271 29 278 290 82 26.0 1e-14 MKLSTRYTILSALALLLMVSCKPMPESERLIPNEIETTNGRTVLVEDYSGVACINCPTAA SRITKAAKAHGDKVVIVALHGSRTDIGTQPEEDPKGLYSPEAATYLERLQAGGSLPIATF NRRPLTSNGDKPFSDSYPQWPAEMQSCLKLPQLYKIDLQVSESDRKVTTRCTATALTPAN QGAATELYLQLWLIEDGIVAPQHLMGRTEADANYQHNHIFRQTLNGLDGEAYQLGQSYDK TSTIEREVIVPDHCSVVAILYDHKTGEVYEVAKAPLKGHATH >gi|228308871|gb|ACLR01000034.1| GENE 37 41039 - 42760 2108 573 aa, chain - ## HITS:1 COG:no KEGG:PGN_0121 NR:ns ## KEGG: PGN_0121 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 19 570 34 578 581 604 54.0 1e-171 MRHLVQRLCLLSWLSIAGLTALSAQSKSEWKAWDKFKPSFSVQSDMLFSLDNKTSGYKSW MSNSYITGTLRNNYLELGLRYEDLLRPMPGHEPEQGRGIPHLHLKGFIGQYGEVTLGDFY DQFGSGILFRSYEERTLGIDNAVRGVHVALTPYDGVRLKGFTGQQRNYFDRTFRLFHKER GFISGGDGELAIHQWAPALRDNQMTLTLGGSYVNKVEGDEVIPVETPAGMTGAMRLNLPR QVHAFGGRAKFTLGGWVLNGEYAYKSSDPTASNHYIYAPGSVAMLSTSYSQRGLSLLLQA KRSENYNYLSARSSVGTPLHINHLPAFTANHTYTLAALYPYATQPEGEWALQGDVRYTIP RGTLLGGKYGTSLRVNYAHIRGLKSVATDQLPLGAEESKLYGTDGYKHPFFGMGELYYSD FNFELSKKFSRSVSLTFEYYHQIYNQQVVEGHAINNPLVYSNIFVLDGKFRLSPRYTLRT ELQYLNSRQAEGSWLFGLAELSVAPHWMFTLSDQYNIDVTKEHYYMGSLTYAKGNHRLQL GYGRTRAGINCSGGVCRYMPETKGIYLSYNGSF >gi|228308871|gb|ACLR01000034.1| GENE 38 42827 - 43318 781 163 aa, chain - ## HITS:1 COG:BH1577 KEGG:ns NR:ns ## COG: BH1577 COG0526 # Protein_GI_number: 15614140 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 26 162 47 175 176 63 27.0 2e-10 MKHVLTILLSLIVVTVAQAQLPQVELKDLQNNVVNTSELSNEGKPFIISFFATWCKPCLR ELKAIHEDYADWQEETGVKLIAVSIDEGQNADRVKPLVDALGFEYEVLLDPNGDFKRAMN VNMIPHVFVIDGKGRVAFSHSGYTEGGEQELIAKVRELLTTEE >gi|228308871|gb|ACLR01000034.1| GENE 39 43347 - 44120 804 257 aa, chain - ## HITS:1 COG:no KEGG:Fjoh_3203 NR:ns ## KEGG: Fjoh_3203 # Name: not_defined # Def: Ig domain-containing protein # Organism: F.johnsoniae # Pathway: not_defined # 32 136 675 787 981 70 44.0 7e-11 MKSTYLSLTLALLTLAFLTSCGPDALKPKVEVTDLSFKATTATLQPGATLQLIATVTPSG AKVTFTSDNTAVATVSETGLVKAVALGTATITAQAGDKKATCVITVAEAKNVTIFNKLDG QKYPSGSTIDYVATISEEKARSYDPELFFSVLKTEQYSGSMTFDTPIDGGVCLGDQCKPA KNLPLFTAKITLISDDEGVDPDEYGKKKGEMTPLNTHIKLNTKAGETYKNRMTIEFAPLM GEGETLKWTINLAITVK >gi|228308871|gb|ACLR01000034.1| GENE 40 44577 - 44798 281 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALMAPIAPMLSETLQSPRHHTSEEIENASVENENPPRRYKKILPNFDLLLPKFHFILPN FYFPAPWRIFVSS >gi|228308871|gb|ACLR01000034.1| GENE 41 44939 - 46024 956 361 aa, chain + ## HITS:1 COG:BMEI0693 KEGG:ns NR:ns ## COG: BMEI0693 COG2087 # Protein_GI_number: 17986976 # Func_class: H Coenzyme transport and metabolism # Function: Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase # Organism: Brucella melitensis # 182 347 6 169 173 117 39.0 4e-26 MRLLIARHGETEENLLSICQGQTAGTLTRRGVAQCLQLGDRLKGCPITHIYSSDQLRAQR SAELMISASGCKAPLTLDRRLRERAFGRWEGRPFVELPPLDEEPHEIESVEAIATRLQSF LEELQERHGRDDLVLLMGHGFTMRVLEALLQGGPLDKVEEITFLPNGDYRLYEDGKLCQR PRVIYISGGQRSGKSGYAQRLARSLSDRPIYLATARHWDEEFERRIARHQADRGPEWTTI EEPRYLSQTQIAGRVVLIDCVTLWLTNIYSDLEFDAEASLSEARREWQELLHHCKAEVLI VVSNEIGMSLHAPDAGSRAFVDLQGWVNQYISATADEAYLMVSGRALCTELISDLYKEES R >gi|228308871|gb|ACLR01000034.1| GENE 42 46021 - 47025 1039 334 aa, chain + ## HITS:1 COG:RSc2397 KEGG:ns NR:ns ## COG: RSc2397 COG2038 # Protein_GI_number: 17547116 # Func_class: H Coenzyme transport and metabolism # Function: NaMN:DMB phosphoribosyltransferase # Organism: Ralstonia solanacearum # 11 330 20 342 354 254 45.0 2e-67 MTFEETLQERIDSRTKPKGALGQLERIAYKVGMIQHSVTPQLIDPVLLVMAADHGIVEEG VSPCPKEITWQQCINFVSGGGACSVLARQNGFRLRVIDVGVDYDFPEACRIESAKVMHGT RNMLHEPAMTTEECAEAMMIGAQCVAQEAERGSNVIAFGEMGIGNTSPATLILHKITGRS IASIIGPGSGLRGSGLEHKTKVLEAVAARYNPQSPMELLSQMGGLEIAAICGGVLEAYKR GMLILADGVIATSAFMVAHEMEPRIVDNVLFAHTSEEPGHQAMIDYFGGEAILSLEMRLG EGTGALVAYPIIQSAVAFMNNMRGFDDAAVCRVD >gi|228308871|gb|ACLR01000034.1| GENE 43 47048 - 47833 938 261 aa, chain + ## HITS:1 COG:VC1238 KEGG:ns NR:ns ## COG: VC1238 COG0368 # Protein_GI_number: 15641251 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin-5-phosphate synthase # Organism: Vibrio cholerae # 9 255 5 252 261 110 32.0 4e-24 MALHLLRTIRSEWDLLRLSLLFYTRIPVGHVAYSEERMGESFRYFPLLGAIVGVLMAGIY ALAGYYLPNAVAAVMSVIVGLVVTGGMHEDGLSDYCDAFGGYHDRETTLRIMKDSSTGVY GILGLVMLLMSRVVLLSYIPYETAIGTIIAMAVVSRWVPILVIRLSTYARKSGEASKATH LRQSVTTKTLLIAAVWAILALLLLPWQAAVVAPVLMTGEALLIMRISNKRIGGYTGDVMG AIVCFAELTLLLVTLVVTIYA >gi|228308871|gb|ACLR01000034.1| GENE 44 47841 - 48371 436 176 aa, chain + ## HITS:1 COG:RSc2395 KEGG:ns NR:ns ## COG: RSc2395 COG0406 # Protein_GI_number: 17547114 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Ralstonia solanacearum # 1 149 1 151 192 90 38.0 2e-18 MSLYLVRHTPVALPQGICYGWLEVPLSEEYPRYVAQIIAELREVQLDKVYSSPSLRCVVL AEAIALTKGLTVRQDERLRELNFGAWEGLPWEEVYEQEAGRAWFADYWHAKTAGGESHDD LLARVADFEAERDKGSQTLLVTHAGVIRAYRILLGKLSPSEAMALEVNFGEIYQYE >gi|228308871|gb|ACLR01000034.1| GENE 45 48364 - 49845 1470 493 aa, chain + ## HITS:1 COG:STM2019 KEGG:ns NR:ns ## COG: STM2019 COG1492 # Protein_GI_number: 16765349 # Func_class: H Coenzyme transport and metabolism # Function: Cobyric acid synthase # Organism: Salmonella typhimurium LT2 # 5 484 3 493 506 361 42.0 2e-99 MSKLKPIMLVGTGSDVGKSIVATGICRILLQEGYKPAPFKAQNMSLNSYPTPEEGEIGRA QAVQAEACGIPCHTDMNPILLKPTADQTTQVILHGKAVGNQSARSYFNVEQRKPLFVEAM KAFDRLASQYNPIVIEGAGSISEVNLWPMDIVNMRVALRTGADVYLVADIERGGIFGSLY GTIELLPPAERAAIKGIIINKFRGDSSLFDSGRKILQDLTKVPVVGLLPYLPNMQIDAED GVSIDSYAAQPRPDTLNVAVVRLPHISNFTDFDSLRFISGVTLYFTSDAEALRQADIIML PGSKNTIDDLLWLQAEGLEAVIQAHHKAGRPLYGICGGYQMMGLRITDSDGVEGEPRTVR GLGLLPTETTLQSNKAVRTSTFTYLPTGTPDCQGYEIHCGVTQPIDAPESPVVMRAGETP DGYWVSPRLWGSYMHGIWDNEAILQQILHEVAPERTFHLERTFATREAAYDRLAEHMRQH LDIEYMLKSLRNV >gi|228308871|gb|ACLR01000034.1| GENE 46 49842 - 50861 714 339 aa, chain + ## HITS:1 COG:sll1713 KEGG:ns NR:ns ## COG: sll1713 COG0079 # Protein_GI_number: 16330049 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Synechocystis # 19 339 11 346 352 136 31.0 5e-32 MIVGHGDDRYSYGALVRYDFSSNVPYRNHAGEIISHLSGRLESLSHYPDPQAKELRELLA EHWRLDPDWLLVTSGSTEAFYLLAHLFAGGETLITVPSFAEYEDACQLYRHHLNYIPTSA IASQSTPADLLWSALPNNPDGDISHRVALLNYCTAHPDSYVIVDEAYAELCAEPVTLLDE VVHHPNLILVRSLTKSFALPGIRLGYIVAHPSLLARLEPLRSPWSVNALALEAGAYICQH YDRLLPDATGLVREAQHLAHEVAQIAGISLIPSPTPYFLACLDEGRGTAAQLKEYLVKQH GVLIRDAANFRSLSPRHFRLSVQSPEAGQALLRGLSSYL >gi|228308871|gb|ACLR01000034.1| GENE 47 50863 - 51789 953 308 aa, chain + ## HITS:1 COG:FN0975 KEGG:ns NR:ns ## COG: FN0975 COG1270 # Protein_GI_number: 19704310 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CobD/CbiB # Organism: Fusobacterium nucleatum # 2 304 5 321 325 210 38.0 3e-54 MYPLLFGLLLDLLLGDPRWALHPIRLFGQLIAWGERWLNHPPHQKAKGTLLALTLVLGVW GFFFAIEWFLADYRYALLAWQTVFFFFAICPRSLIGEALAVERYVVAGDLEGARKRLSWI VGRDTSQLTFAQIRTAVLETLAENLSDGVIAPLFFYALGGVPLMMAYKMINTLDSMIGYK DPRYKDFGYFAARILDDAANYIPSRLTALLMLLVAPSRRAVRTVWRDARKHASPNSGYPE SALAGILGVQFGGPNIYHGMLVEKPYIGAPLHAVTAQTLRRTIIIVIAVTLLASLLVLLT DLLIRGLI >gi|228308871|gb|ACLR01000034.1| GENE 48 51813 - 52058 125 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSLIACQQLTADHRHSAHTSEEIKNASVENGNPSRRYKKILPNFDLLLPKFHFILPNFY FGPPWGNFVSSLEIPKFLGRN >gi|228308871|gb|ACLR01000034.1| GENE 49 52158 - 53240 916 360 aa, chain + ## HITS:1 COG:aq_1630 KEGG:ns NR:ns ## COG: aq_1630 COG0618 # Protein_GI_number: 15606737 # Func_class: R General function prediction only # Function: Exopolyphosphatase-related proteins # Organism: Aquifex aeolicus # 26 352 19 316 325 117 29.0 2e-26 MSQLSNRPLSDTLELTSLGDVGERRVVIVGHKSPDGDCIGSALGLRSYLLARGADEVSIL VVGRMPDNLRWLPGAETVHQLSAQSDLEPIRQILAQARLLLLVDFNHLGRIGNPLEGLVA EIVGKPEVRSVMIDHHPEPDMGLVNEMYSDTSACATGFLIAELLGGGASRELELHGGADM ATCLLAATYTDTGLLRHGQITPTLFRTIAHLLEVGARHEEIVLRIFKSDKLSRQRLLGYI INERTTYDLDLGVAVFTLRQEDFDRFGIEPGDTEGLVNVPLDVAGIRAVAFLREQRDPDE PVKISLRSQGNLPVNEVASAIFGGGGHLNAAGAEYQGTLSDALALVWEGLRELVHRYPDC >gi|228308871|gb|ACLR01000034.1| GENE 50 53273 - 53902 942 209 aa, chain + ## HITS:1 COG:no KEGG:PGN_1188 NR:ns ## KEGG: PGN_1188 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 11 205 5 201 203 155 42.0 7e-37 MKATNHTFTALVTLVLMLLLGQGVLTSCRDKQHIKSLSEMLRDEQKIIDNFIQEQGMNVQ EGVEEQREFDPGVWYKFPNGVYMQVLDKGAELATPERTRVMLRMKGRFIAPEYNPSFDNL SKGYQQSTEFIYINSRDRNGSIHYKLIQEQFGHSIDALMCEGIAYPLTMVGNGAKIRLLI PFLLGPNIAYNAGAPMYCEEVWYQFVEES >gi|228308871|gb|ACLR01000034.1| GENE 51 53976 - 55373 1720 465 aa, chain + ## HITS:1 COG:PH0923 KEGG:ns NR:ns ## COG: PH0923 COG1109 # Protein_GI_number: 14590777 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Pyrococcus horikoshii # 42 463 37 455 455 251 38.0 3e-66 MTVIKSISGIRGTVGGSLTDGFNPLTIAHFVVGYAQHIKLYESISRPTIVVGRDARLSGE MVQQVVIGTLLGMGCDVINIGLATTPTTEMAVLGHRADGGIIITASHNPIQWNALKFLGS DGTFLNVDRGNEVLRLSEDHTVPFASVEDLGQVISTDSYLQKHIDAILALPEVDVEAIRK AELTVAYDPINSVGAIALPPLFEALGVKEWRGINDTPDGKFAHNPEPLPSHLVDLCELVR IARADVGFSVDPDVDRLAIIDETGHPFGEEYTLVSVADYLLGYHEGGNTVSNMSSTRALR DITEQHGGSYTPAAVGEVNVVKRMRETDALIGGEGNGGVIYPRLHAGRDALVGIALFLTH LAKSGETVSQLRKRYPDYAMCKRRVELPAGTDVTALFATLEREVASLKPLTEDGLKIDFD NSWVQVRPSNTEPIVRVYTEAPTEEAASALADEYVSLVEQQLARK >gi|228308871|gb|ACLR01000034.1| GENE 52 55377 - 56858 1311 493 aa, chain + ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 4 479 3 458 458 267 35.0 3e-71 MARKRKEPRYLDDVLIERMGAEGQCVAHVEDKVLFVPYAAPGDRCRIRVGRSKRSYMLGT IEELLEPSPLRVEPRCEVFGACGGCKWQQLPYDEQLRGKSQQAADAMTRIGHIAIEHTEP IVGCEDPWHYRNKVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHG VTCQIADPIASEIRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGGLMVLIAFA EGTEELRVQLLEALRERFPQITSLYYMVNTKFNDSLADLPAQLYSGAPYIEENMHGLRYR IGPKSFYQTNSRQAERLYEKVREYAQLKGDEVVYDLYTGAGTIANYLAQSCRSVIGIEYV PEAVEDAFVNRDQNGITNATFYAGDMKAILTDDFVAAHGRPDVLVTDPPRAGMDAPVVEV ILRAAPQRIVYVSCNPATQARDLALLMAEGQYRAVKACAVDMFPHTHHVETVALLSKLNT EHHLDIEIGEDED >gi|228308871|gb|ACLR01000034.1| GENE 53 56848 - 57327 309 159 aa, chain + ## HITS:1 COG:AF0346 KEGG:ns NR:ns ## COG: AF0346 COG2608 # Protein_GI_number: 11497958 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Archaeoglobus fulgidus # 23 145 4 120 204 75 38.0 3e-14 MKINNECCCGCKTEKPDQIKDNCPVCNNEGISVSKVTVEHLVVDDYRNAVNGDQYKICMN EDCDVVYYNLDNEIKFLKDQVRVPIWFKKDADPKYACYCSEVTENQVIEAVVKHGAKSVK EVNAITGAMKNSNCKENNPLGVCCHKIIQEAIDKGLKMK >gi|228308871|gb|ACLR01000034.1| GENE 54 57632 - 58165 589 177 aa, chain + ## HITS:1 COG:no KEGG:MAV_4740 NR:ns ## KEGG: MAV_4740 # Name: not_defined # Def: hypothetical protein # Organism: M.avium_104 # Pathway: not_defined # 96 166 25 95 110 79 59.0 5e-14 MKQYYLVINGEKSGPFTIDQLTTQQVTPQTPVWTEGMSDWVPAQQVAELSSLFASQAPIP EASQPTATPQAPAYNAAPAYGNPQPQAPNTQVVPPNYLVWSILVTLFCCIPGGVVAIVYS TQVSSRFQQGDYAGANESSRNARKWVIISAIAAAAVWVIYFIILAVTGASILALSQY >gi|228308871|gb|ACLR01000034.1| GENE 55 58427 - 58957 602 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469543|ref|ZP_04054536.1| ## NR: gi|228469543|ref|ZP_04054536.1| hypothetical protein PORUE0001_0190 [Porphyromonas uenonis 60-3] # 25 176 12 163 163 280 100.0 3e-74 MKAYITHISRLSLLTLTMLLLLGLPTSAQRHSARTRVNTSRLMEIKNVDVIYISPAMLQS VPKASLRIDGAESMAGIMDGITSIHIYTASDRKAIQEIRRTFAPIIELRRSDLEQLMYVK NDDGVVNLIGQIQGDNASELYMFVSGDDEYTVINFSGSFSRRQLEKAVTQDNRRRK >gi|228308871|gb|ACLR01000034.1| GENE 56 59034 - 59558 713 174 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469540|ref|ZP_04054533.1| ## NR: gi|228469540|ref|ZP_04054533.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 174 1 174 174 349 100.0 3e-95 MIHSSHDIDQLLERYYDGTTTPDEEFVLYLALLQEQPGSPYYADRMLLEATLQRAATETR SAAPAPTPRWRVWVRKYAVAAAVLLIGGVGVSVFQWGRNSRQAELSLRNGQPIPQEQVNE YALAAFTKLGDCMQLCSEQNDEIGELFGRLQDSYQNSMEKIPFVTEDGWTLTGD >gi|228308871|gb|ACLR01000034.1| GENE 57 59597 - 60103 692 168 aa, chain - ## HITS:1 COG:no KEGG:PG0985 NR:ns ## KEGG: PG0985 # Name: not_defined # Def: ECF subfamily RNA polymerase sigma factor # Organism: P.gingivalis # Pathway: not_defined # 1 165 1 166 168 115 39.0 5e-25 MDGATFIQTYVPLRPTILQVCMALLSNEMEAEDVTQDVLLKLWEQRAHLDEVASPKAYAI RIARNKCIDTLRAPAQRLRNAEEPTELEMPLVTTTPQEDLIAQEQLTRINDWIATLPEQQ QEVWRLRQEMMLTNDETAQRMGLQEVTVRSMISRLRKEARKLFADMRE >gi|228308871|gb|ACLR01000034.1| GENE 58 60361 - 60582 241 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVRKNEIKVPKNFSIPPWRISNSSGGNADKPRNSPKVAKIIRHLSAGLKRKYLHVGIVT HAFQTIPLQSHFD >gi|228308871|gb|ACLR01000034.1| GENE 59 60606 - 61289 1101 227 aa, chain + ## HITS:1 COG:no KEGG:PGN_0558 NR:ns ## KEGG: PGN_0558 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 224 1 215 216 115 34.0 1e-24 MKKLSLLTLLVMLLCVACHKPAPQPGHTPDDPVTPPADPKKEWMVKRMTIDATDYTKWVY LNFTTGELVQVTDPANDLSWDLGLHRYDFKTNGGDSGKGKGAAVRITKQKVLTADIPTPE DSEWTLDREGLLLMQFEDDGLGSHRTKYEMQEANFLLSSECDGYGGYTNKGVIWQEGMPP QVYWDNGIYLVRSASGEIARLRVLDYQDNKKHRGYITIEYAIQVDKK >gi|228308871|gb|ACLR01000034.1| GENE 60 61338 - 62951 1717 537 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469587|ref|ZP_04054580.1| ## NR: gi|228469587|ref|ZP_04054580.1| hypothetical protein PORUE0001_0194 [Porphyromonas uenonis 60-3] # 1 537 1 537 537 979 100.0 0 MNLQLPLLLKLFGVAISLWLFTLPVGAQEMTFMERPFDPATDQAQLLPADQKGSVSWTAA TRTLTLRDVQINTISRILTGWMSDEITIQVEGTNQIVCTGSDDAIMMRSSVRITGPGSLS ITSEQANAYACRNGASLTIADGVSVTAIGLNGGIVGDFLSSHLLIDKAYVTASTINDQGV VSIGYFKELTLEGCAITSPSGAKVAELNKVMSITLDGKDEYAGKVIIAPQQSYHKVTIAQ AEHGRIVAPEGVDLTHLLAGSAVTFTAEPEDGYALTKLMAGTEDITNTRTLIVKADVTVT PTFSPVKSYRVSLQKPEHGALTVKEQEYDLTKVPEGAILHFICTPDKGYELEQVKAGDED ITKSLYIKVHSDVQVTAQYKLIPIPTYRVAIKTLGAGTVTADYPNLEAVPEGTTVHFTCT PKNDQHFLIALKANGEDIMESKSITIEDEDVNVIATFKQRTAIDAPQGVAPTIARTGDAL IISGVATDQPVALITLLGETLLRTSIQAGETLTVSTESFPAGAYLLTIGDTTYKINL >gi|228308871|gb|ACLR01000034.1| GENE 61 62967 - 64172 1403 401 aa, chain + ## HITS:1 COG:no KEGG:PG0495 NR:ns ## KEGG: PG0495 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 8 315 11 308 469 84 27.0 6e-15 MNYTRNILSSLLIILAATLSLTAQKVTDLKQISNFYHVPNSATHRLSAIQGIYGYEDLEY HYDGHNNLIRMDHYQTDTISKSKELVSYEKYLYNDKGQCWQRETYDYRKDWPDLVVSKRD IFVYNDKGQLTQYTRWYNLNTVASDTTLVEDRKISIQYTESGLPSKAHVKFLDPRNFSWY DSFDITLEYNDRGQLCKRTSIVDDKLYEAEEITFDAQGRYMVGLALTSENGLTEWIYSPD DKGNLVNTGTSDFPTDWTFVAGQKAEETYYPMPNLSDLMLNGLRNYTLLEMPLLYNSSPE AVASSRGNDADGEYDGGKFVYEASKPTYVEPVYTTERCTLSCGADSWTVSGTERAVQLYT LEGHCLQVVEPVAGVATISTATLPAGSYLIKAGAQTFKVVR >gi|228308871|gb|ACLR01000034.1| GENE 62 64264 - 65607 1790 447 aa, chain - ## HITS:1 COG:no KEGG:Fjoh_3856 NR:ns ## KEGG: Fjoh_3856 # Name: not_defined # Def: hypothetical protein # Organism: F.johnsoniae # Pathway: not_defined # 61 447 53 429 432 265 48.0 4e-69 MNKTIRLLSLVMATLMSLALLTSCDETGNEPNGGGDNNKVTGRTIGGKELVVIEGRISGK NNHWTADKVYALKGIVTVPAGETLTIDAGTTIIEEPTASGATGVLVVTRGAKIMAEGTAQ KPIVFTSSKAVDNNAGRPAPGDFGGVIILGKAKVNTPTDAQFIEGLNQGVEEYRYGGDND EDNSGVLRYVRIEYAGFILGDSNEINGLTCGGVGRGTTIDHIQVSWGLDDSFEFFGGCVN ATHLVSYACDDDNFDFDNGFTGSITYGVAIANPASTHSDSKGKSDSNGIELDNNAKAQDE TFSLIPKTHPTLTNVSIIGASTRVANVHNNFQGDAYKYAARIRRGGQITLKDCILTGYPK GFVLDPDADKMEHSKIEGSSFHGFDAAFEIKNGSTKPTTGIIEVVNKDSAATFGMKVPFG TPADFTGALVGAFPASKGNWLQGWTAF >gi|228308871|gb|ACLR01000034.1| GENE 63 65650 - 68646 3986 998 aa, chain - ## HITS:1 COG:CC0171 KEGG:ns NR:ns ## COG: CC0171 COG1629 # Protein_GI_number: 16124426 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Caulobacter vibrioides # 135 301 64 228 888 113 37.0 2e-24 MLHKALFYTLALLTLFTAGATLIAQPHGQPIPHSEADLRLGTLTGRIVDEHGEGLIGATV RIIETGGGQVTDFDGNYSLRLTPGSYTVEIAYVGYATKQIKEVRITAGKETNLSVDLAIA DNVLGTVVVVGSYKTSNTAGAMKIQQSMPQLSTVVSSEMIGKTADKNLGEALKRVTGVTT MSNKYVAVRGMGERWNEASLDGIPLPSTESNAKAFGFDLIPTSLIDNVTVLKTATPDVSG NFSGGLIQITTRDIPTKDFISISAGTGYNSLSTFQTQKYRIRGKWDWLGYDDGRRALPKG LHEIPFDPYNPVPELFEQSKRLTTDNFTIHEGKTPLSQNYQVSLGKSWDLNKSGNHRLGL IASLTYRNTQQQTIIDHIERGEWMNAKQYNKVQESFVDTGIRNSGANYKYNTTLAGVLNI GWQRGTNRLSLRNTYTHKYDNDLSELTGLSDEDPNPESNPYRQQVNYPTFHDLLQNKLSG KHQLGESLRLDWALAHTYVQRNQKDAAFTQQVSQRDETGARHFYNQVGVQSGTLFPLTRA WYLNHERDFNGQVNVELPFDLFGNDWTHKFKAGYDGAFKENRFEFWELSMHLFNTRGFDF TTSTIADLIKEENMRDGGFAWDLKRLQGDGRMYHGRVIQNALYAMLDDRYSELLRLVWGL RVEHYLYQELSNPSMSMGELNIVDQDRKERPVAIMPSINLTITPIKDLNVRLSYSRNTVR PQFMERTAYRFYDPFLGGEIFNQSVISTTVDGADLRVEWYPGAGEVISIGGFYRYLDKPI ERIAQKTASFARFYMLMNSDKAHSYGIELELRKNFGFIPLGSWLEHLYLNANATFTQSIV TGMVSRADERGILHWVPVTQRRPMYSQVPYMYNVGLSYESDTFGANLTMNRSGRKLVLNT NQAYEQEYEAPFSQLDAQLSYTFPKQGVTIKVNGSNLLNAKHIIYTNHVDDFERAASNNQ ILDTMRPGTSSDYEPEHDNVVYQYRDGLSLSASISWTF >gi|228308871|gb|ACLR01000034.1| GENE 64 68993 - 69169 103 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 21 57 1 37 58 64 94.0 2e-09 MHKGESLCCFRDSASVTYGGMLPSDLTLSALLFILSAKSRQSCLQDCETVDFCNSLLE >gi|228308871|gb|ACLR01000034.1| GENE 65 69289 - 70071 974 260 aa, chain - ## HITS:1 COG:BH0265 KEGG:ns NR:ns ## COG: BH0265 COG1624 # Protein_GI_number: 15612828 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 3 256 7 252 274 172 40.0 4e-43 MTLDWLSFTLVDLFDIILSALLFYYVYRTLRATASRALILGIFTFILVWVIVSKWAGMIL LGGILDELVGTGMLILVIIFQEEIRRFLITLGSTNRWRFLRKIFKGDDQTAQEEQRCVAA LVLACMNMARKKVGALIAIQAKQELTAYLHTGEVFKADVNARLIENIFFKNSPLHDGAMI IVDSDIRAAGCILPVSNDPNLSKDLGLRHRSALGLSQATDCLVIVISEERGKISLAQNGV IDVDVDIDTLRQRLDAIYAS >gi|228308871|gb|ACLR01000034.1| GENE 66 70097 - 71005 1100 302 aa, chain - ## HITS:1 COG:TM0040 KEGG:ns NR:ns ## COG: TM0040 COG0294 # Protein_GI_number: 15642815 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Thermotoga maritima # 10 279 9 273 278 167 38.0 2e-41 MSYILNLGGRAFDLSEPVVMGILNVTPDSFYAGSRKQTAEAIAERIHEIIQEGGRIIDIG ACSTRPGGGELVDGEEELRRLRHALEIIRAEAPDLPISVDTYRADVAKACVEEYGVEIIN DISGGQADAQMYSTVGELGVAYILMHLEHNVEGMHQVVDYKPSVEVCVADYFRKRLEQLH ACGVKDVILDPGYGFSKSMDDHYRLLTHQREALQEFAEPVLVGFSRKRMVQTVIGADAMH SGDATNVLHTYALMEGIAQIIRTHDVRLAVEAIQVTDMIRKHLPDATGASSYTHWQRPLE IH >gi|228308871|gb|ACLR01000034.1| GENE 67 71088 - 72569 1726 493 aa, chain - ## HITS:1 COG:ECs3790 KEGG:ns NR:ns ## COG: ECs3790 COG0427 # Protein_GI_number: 15833044 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Escherichia coli O157:H7 # 6 488 8 490 492 510 52.0 1e-144 MSYPIMTAEEAARLVHDGDQVGFSGFTPAGCPKVVPQAIAHYAEEEHAAGRPFRIGVFTG ASTGDRLDGALARAHAIKFRTPYQSNKDLRAEINSGEVAYCDLHLSQLAQELRAGFFGKI DVAIVEAAELTDDGQLVPTTAVGILPTICRLADRIIVELNDRHPAKIRGLHDIAEPLDPP ARREIPIYKPSDRVGKPYLQLDPKKVVAVVKTSEPNDDGGFAPLDEVTQAIGDNVTKFLE EEIRTGRIPREFLPLQSGVGNIANAVLASVGKSPKIPPFEVYTEVIQDAVIELMKEGRVK FASGCSLSISRDVILDIYQNWDFFQDKLLLRPQEYSNNPGIVRRLGVITMNTALEADIYG NINSTHVLGTKMMNGIGGSGDFTRNGYISIFTTPSTAKGGAISAIVPMVSHVDHTEHSVK VLITEYGIADLRGLSPRQRAERIIENCAHPDYRPLLRAYLAQASEGQTPVCLEKAFAFHK ALAESKDMRQAKL >gi|228308871|gb|ACLR01000034.1| GENE 68 72750 - 72932 337 60 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228469561|ref|ZP_04054554.1| ribosomal protein L32 [Porphyromonas uenonis 60-3] # 1 60 1 60 60 134 100 1e-30 MAHPKRRQSNMRTAKRRTHDKAATPTLAKCSNCGSWHVYHTICPECGYYRGQLAIEQEEA >gi|228308871|gb|ACLR01000034.1| GENE 69 72948 - 73478 502 176 aa, chain - ## HITS:1 COG:no KEGG:PGN_0187 NR:ns ## KEGG: PGN_0187 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 174 1 183 183 118 33.0 1e-25 MSHGGRYTIHLKGLPQGVSTEDFVVESAFLESRPTFDLSGGPVVCTIRVDRVGETYDLLL TLAGSVQTHCDRCLAPLEMRIDISQHLVVKLGDQYEEVSDEEIIVPHNSPSLDCADLIYD LIVLSLPISRMHPEGACAKDMQAILDNLDATAEEETDGRWAALSTLRDSLQQEKDK >gi|228308871|gb|ACLR01000034.1| GENE 70 73878 - 74259 483 127 aa, chain + ## HITS:1 COG:no KEGG:PGN_1736 NR:ns ## KEGG: PGN_1736 # Name: not_defined # Def: putative glycogen synthase # Organism: P.gingivalis_ATCC33277 # Pathway: Starch and sucrose metabolism [PATH:pgn00500]; Metabolic pathways [PATH:pgn01100] # 6 127 4 124 271 169 66.0 2e-41 MAAKDKKVLYISQEIYPYLPESDLAHVARYLPEHIQNAGNDVRIFMPRYGLVNERRNQLH EVIRLSGINVIVDDYDHPLVIKVASIPSTRIQVYFIDNADLFGRKSLFGPPSEGASSDNA DRSIFFI Prediction of potential genes in microbial genomes Time: Fri May 27 09:04:49 2011 Seq name: gi|228308868|gb|ACLR01000035.1| Porphyromonas uenonis 60-3 deg1118640599707, whole genome shotgun sequence Length of sequence - 709 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 23 - 616 652 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308868|gb|ACLR01000035.1| GENE 1 23 - 616 652 197 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 131 85 209 227 84 39.0 1e-16 MDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTD YEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTA RPHRALNKKTPMQMLIPDYPNPLTTQPSKKQISKNNSPKAPSLKAPSPCRLTPNKELSLC TSAVKTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 09:04:50 2011 Seq name: gi|228308865|gb|ACLR01000036.1| Porphyromonas uenonis 60-3 deg1118640599495, whole genome shotgun sequence Length of sequence - 674 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:04:50 2011 Seq name: gi|228308862|gb|ACLR01000037.1| Porphyromonas uenonis 60-3 deg1118640599524, whole genome shotgun sequence Length of sequence - 566 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 116 - 169 16.3 1 1 Tu 1 . - CDS 241 - 564 494 ## COG0541 Signal recognition particle GTPase Predicted protein(s) >gi|228308862|gb|ACLR01000037.1| GENE 1 241 - 564 494 107 aa, chain - ## HITS:1 COG:aq_1720 KEGG:ns NR:ns ## COG: aq_1720 COG0541 # Protein_GI_number: 15606801 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Aquifex aeolicus # 1 101 335 435 454 94 50.0 5e-20 KKMGNLKDLVSMIPGVGKMVKDLDISNDAFKGIEAIIHSMTPEERAKPSILDGSRRKRIA DGSGTSVAEVNRLIQQFDQVSKVMRKMQGGGLGRMQAKMQKKNKKRR Prediction of potential genes in microbial genomes Time: Fri May 27 09:04:51 2011 Seq name: gi|228308859|gb|ACLR01000038.1| Porphyromonas uenonis 60-3 deg1118640599540, whole genome shotgun sequence Length of sequence - 540 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 539 196 ## PG1710 ISPg5, transposase Orf2 Predicted protein(s) >gi|228308859|gb|ACLR01000038.1| GENE 1 65 - 539 196 158 aa, chain + ## HITS:1 COG:no KEGG:PG1710 NR:ns ## KEGG: PG1710 # Name: not_defined # Def: ISPg5, transposase Orf2 # Organism: P.gingivalis # Pathway: not_defined # 23 158 2 141 312 86 38.0 3e-16 MRQLESAQVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRRRKRPPQTTKGVVNHGFQDHL NTTPKYIATDHCRLTVSDITYVKCLGGFAYLSLTMDAY Prediction of potential genes in microbial genomes Time: Fri May 27 09:04:54 2011 Seq name: gi|228308856|gb|ACLR01000039.1| Porphyromonas uenonis 60-3 deg1118640599631, whole genome shotgun sequence Length of sequence - 656 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 654 508 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228308856|gb|ACLR01000039.1| GENE 1 3 - 654 508 217 aa, chain - ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 217 49 290 341 301 60.0 1e-80 GRTVIPYGLEVTFDKTTHLIFPAPIRYVDLGSANIVAAKAESAENVLRVKASVKDFETET NMSVICTDGSFYAFNVKYAKEPEKLSLEMVDFLHSGEGNLPSNKADIYFKELGNETPTLV RLLMSTIHKQDKRLVKHISAKQFGMQFGLKAIYAHNGLLYFHTSIRNTTNMRYQIDYVTF KVVDKAVTTQTAIQETILQPLRAYNDLAVVAPKSELR Prediction of potential genes in microbial genomes Time: Fri May 27 09:04:58 2011 Seq name: gi|228308851|gb|ACLR01000040.1| Porphyromonas uenonis 60-3 ctg1118640599647, whole genome shotgun sequence Length of sequence - 1619 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 491 269 ## gi|228471473|ref|ZP_04056257.1| hypothetical protein PORUE0001_0047 2 1 Op 2 . - CDS 504 - 821 333 ## gi|228469600|ref|ZP_04054587.1| hypothetical protein PORUE0001_0526 3 1 Op 3 . - CDS 833 - 1480 334 ## BT_0076 transposase Predicted protein(s) >gi|228308851|gb|ACLR01000040.1| GENE 1 2 - 491 269 163 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471473|ref|ZP_04056257.1| ## NR: gi|228471473|ref|ZP_04056257.1| hypothetical protein PORUE0001_0047 [Porphyromonas uenonis 60-3] # 1 162 1 162 162 271 97.0 9e-72 MKEKSFQFRSSWYEAITQLPDSSQGVAYSLIMGYALKGLEPDLATVPALVQGVFLVVREQ IDADAHRQAEISSIRKTCGKLGGRPRKSEQGAKASTTTPNKGVTNKSTLDGGQKLNNQKV YLVSSSPKAGEKQKVYLLSENTQVADVEQSTANPLSSSSTTQE >gi|228308851|gb|ACLR01000040.1| GENE 2 504 - 821 333 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469600|ref|ZP_04054587.1| ## NR: gi|228469600|ref|ZP_04054587.1| hypothetical protein PORUE0001_0526 [Porphyromonas uenonis 60-3] # 1 105 1 105 105 143 100.0 4e-33 MNQSPVDPQVQLLLLQALLARRDETNRNEVYLSHTELEVLLQIPRTSIELAVQRGKLEPV NSTPQYSYNAVLSAIEMRDLEPLVTEQERTDILERLRAYRQLINL >gi|228308851|gb|ACLR01000040.1| GENE 3 833 - 1480 334 215 aa, chain - ## HITS:1 COG:no KEGG:BT_0076 NR:ns ## KEGG: BT_0076 # Name: not_defined # Def: transposase # Organism: B.thetaiotaomicron # Pathway: not_defined # 9 208 201 397 410 154 38.0 3e-36 MERAVEEDLLMRVPFPKVVLRMQPTDRGFLDDSDLERLRSVELSNPKLLLVRDAFLFSCY TGLSYADISRLVRDNIISMHGQSWVVLRRKKTGVLSTIPLMSVAVHILTPYLAQATSTES SESRIFPLCTNPYVNQQLKEIQRLSGVKRVLTYHLARHTFATLALTKGVSLDTVGSVLGH SCLSTTRIYARVLPMKVSEEMRSLDNRLQEECVTN Prediction of potential genes in microbial genomes Time: Fri May 27 09:05:14 2011 Seq name: gi|228308847|gb|ACLR01000041.1| Porphyromonas uenonis 60-3 ctg1118640599768, whole genome shotgun sequence Length of sequence - 1793 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 197 - 1636 966 ## COG4886 Leucine-rich repeat (LRR) protein + Term 1647 - 1681 4.1 Predicted protein(s) >gi|228308847|gb|ACLR01000041.1| GENE 1 197 - 1636 966 479 aa, chain + ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 4 113 172 281 292 94 50.0 6e-19 MRSNQLTNLDVSSCTALTQLGFGINQLTSLDLSKNTALTKLNCYSNQLTSLDLSKNTALT KLVCNSNQLTSLDVSVCTALTELYCNNNRLTSLDLSNCRGLETLKSYGNKFDNGAIHQLI SSLPNRKGIGVGKFYVIDSDNNNTCYQYDVDLAKKKFWLLYHEAGALYLGEPNPTFALTY EPTISGGSIIIKGADDLQHVVYGTELTINATPAEGYELTALTANGTDILATRKVVVTEAT EIKATFVKKTFVVTLDKVGEGELSTTGTDNLNKVPYGTELTIIATAAEGYELKSIVVDGV NITATKKVVIKNNVTVKATFVKKTFKVTLTKEGEGTITTTGASNLNAVAYGTELTIVATP AAGYELQSLVIDGVVNITATKKVVVTDNVTIKATFVDHTGVETTVTQRMQLYPNPATDYL LVEGVAPASEVTLHSMTGERLYAGRADSRGVLQIDLTPYADGVYLVCVAGETYRVVVRH Prediction of potential genes in microbial genomes Time: Fri May 27 09:05:14 2011 Seq name: gi|228308844|gb|ACLR01000042.1| Porphyromonas uenonis 60-3 deg1118640599694, whole genome shotgun sequence Length of sequence - 525 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 47 - 524 450 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308844|gb|ACLR01000042.1| GENE 1 47 - 524 450 159 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 40 154 123 238 294 89 39.0 3e-18 MLLRSRKRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSL TMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYKKHGFDLKGLIFHSDRGCQYVSKQMT DYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNF Prediction of potential genes in microbial genomes Time: Fri May 27 09:05:15 2011 Seq name: gi|228308841|gb|ACLR01000043.1| Porphyromonas uenonis 60-3 deg1118640599700, whole genome shotgun sequence Length of sequence - 516 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 55 - 514 491 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308841|gb|ACLR01000043.1| GENE 1 55 - 514 491 153 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 131 85 209 227 85 39.0 4e-17 MDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTD YEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTA RPHRALNKKTPMQMLIPDYPNPLTTQPSKNQIS Prediction of potential genes in microbial genomes Time: Fri May 27 09:05:15 2011 Seq name: gi|228308839|gb|ACLR01000044.1| Porphyromonas uenonis 60-3 deg1118640599595, whole genome shotgun sequence Length of sequence - 505 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:05:16 2011 Seq name: gi|228308836|gb|ACLR01000045.1| Porphyromonas uenonis 60-3 deg1118640599550, whole genome shotgun sequence Length of sequence - 507 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 357 413 ## gi|228470074|ref|ZP_04054983.1| gliding motility associated protein GldN family protein + Term 383 - 429 11.2 Predicted protein(s) >gi|228308836|gb|ACLR01000045.1| GENE 1 1 - 357 413 118 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470074|ref|ZP_04054983.1| ## NR: gi|228470074|ref|ZP_04054983.1| gliding motility associated protein GldN family protein [Porphyromonas uenonis 60-3] # 1 118 284 401 401 145 100.0 5e-34 SEMSDSTAMAARQAFSNQIEGELKQFEESLYGTEYTKPEASDSDLQEGRDGEDDSELDTA RARRSQELREGKSQRKAAKVTKAKKKSRTTKKATPKAAKAEQPKQSKSTTTRSVRNRF Prediction of potential genes in microbial genomes Time: Fri May 27 09:05:22 2011 Seq name: gi|228308833|gb|ACLR01000046.1| Porphyromonas uenonis 60-3 deg1118640599696, whole genome shotgun sequence Length of sequence - 541 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 88 - 147 2.9 1 1 Tu 1 . + CDS 182 - 539 387 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308833|gb|ACLR01000046.1| GENE 1 182 - 539 387 119 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 118 85 196 227 71 36.0 4e-13 MDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTD YEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNT Prediction of potential genes in microbial genomes Time: Fri May 27 09:05:30 2011 Seq name: gi|228308807|gb|ACLR01000047.1| Porphyromonas uenonis 60-3 ctg1118640599754, whole genome shotgun sequence Length of sequence - 29136 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 17, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 179 186 ## gi|228469439|ref|ZP_04054447.1| putative fkbp-type peptidyl-prolyl cis-transisomerase + Term 231 - 282 18.4 2 2 Tu 1 . + CDS 1199 - 2629 1570 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Prom 2974 - 3033 2.3 3 3 Tu 1 . + CDS 3078 - 3710 876 ## COG2095 Multiple antibiotic transporter + Term 3733 - 3775 10.2 - Term 3719 - 3764 8.6 4 4 Op 1 . - CDS 3844 - 6141 2645 ## COG4886 Leucine-rich repeat (LRR) protein 5 4 Op 2 . - CDS 6155 - 8671 2820 ## TDE2003 internalin-related protein - Prom 8770 - 8829 3.5 - Term 8725 - 8757 1.3 6 5 Tu 1 . - CDS 8956 - 9123 106 ## - Prom 9203 - 9262 3.3 + Prom 9223 - 9282 2.8 7 6 Tu 1 . + CDS 9340 - 10542 1617 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 10604 - 10628 -1.0 - Term 10629 - 10678 12.2 8 7 Op 1 . - CDS 10717 - 11301 723 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 9 7 Op 2 . - CDS 11298 - 12893 1525 ## COG0793 Periplasmic protease 10 7 Op 3 . - CDS 12929 - 13417 531 ## COG2131 Deoxycytidylate deaminase 11 8 Tu 1 . - CDS 13533 - 14273 923 ## COG2859 Uncharacterized protein conserved in bacteria - Term 14278 - 14326 15.0 12 9 Op 1 . - CDS 14328 - 15275 739 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 - Prom 15362 - 15421 2.1 13 9 Op 2 . - CDS 15473 - 15748 251 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 14 9 Op 3 . - CDS 15778 - 16623 843 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 15 9 Op 4 . - CDS 16643 - 18787 1961 ## COG0514 Superfamily II DNA helicase 16 9 Op 5 . - CDS 18738 - 20519 1765 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 20706 - 20765 4.7 - Term 20745 - 20804 5.4 17 10 Tu 1 . - CDS 20853 - 22382 1697 ## COG1530 Ribonucleases G and E 18 11 Tu 1 . - CDS 23154 - 23426 339 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 23596 - 23655 5.0 + Prom 23381 - 23440 4.2 19 12 Tu 1 . + CDS 23466 - 23669 64 ## gi|228469618|ref|ZP_04054598.1| hypothetical protein PORUE0001_1560 - TRNA 23671 - 23742 44.9 # Glu TTC 0 0 - Term 23531 - 23579 11.0 20 13 Tu 1 . - CDS 23820 - 24071 407 ## PROTEIN SUPPORTED gi|228469629|ref|ZP_04054609.1| ribosomal protein S20 - Prom 24276 - 24335 2.6 - TRNA 24141 - 24215 55.3 # Glu CTC 0 0 - Term 24274 - 24329 5.3 21 14 Tu 1 . - CDS 24407 - 25303 878 ## COG0061 Predicted sugar kinase - Prom 25357 - 25416 3.0 22 15 Tu 1 . + CDS 25274 - 25522 185 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Term 25606 - 25649 2.0 + Prom 25568 - 25627 2.6 23 16 Tu 1 . + CDS 25730 - 28252 3159 ## COG0370 Fe2+ transport system protein B + Prom 28600 - 28659 2.4 24 17 Tu 1 . + CDS 28754 - 29135 339 ## gi|228469616|ref|ZP_04054596.1| hypothetical protein PORUE0001_1566 Predicted protein(s) >gi|228308807|gb|ACLR01000047.1| GENE 1 3 - 179 186 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469439|ref|ZP_04054447.1| ## NR: gi|228469439|ref|ZP_04054447.1| putative fkbp-type peptidyl-prolyl cis-transisomerase [Porphyromonas uenonis 60-3] # 1 58 418 475 475 89 100.0 6e-17 SAKEQAKEQALAAKVQELVTLDEQKPLTIKELYEVHADLQKEINKLLGLSDVEPAAEA >gi|228308807|gb|ACLR01000047.1| GENE 2 1199 - 2629 1570 476 aa, chain + ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 3 476 5 482 482 345 40.0 1e-94 MWTILLTILYTLLVVGVVVVILTGGDDIYRMFSWLMVVLFLPIVGVILYLLFGRSAASMR LISKDFLKEINRMPLEHTDQTFHQALLEDPYYGTLGKLLYNSDDRMVLAASSMSVITVGT DKYRQLFEDISSARREIHLMYYIIASDELGVKLRDLLVRKAREGVRVRVIYDGLGSFWSD VRGFWKPLRRAGGEVYAFLPVRFPFIDLRINYRNHRKVVVIDQRVGYLGGMNVAQYYAQG NELGRWRDTHFRIEGSAVAGLQRVFLVDWAVAVRKRFDLAPYFAEIDRGAAYEHPIAMQF LTNGPQAHWLTIEQAFVKACSMAHEEILIQTPYFLPPEGLLMSLCSAAMRGVHVCVMIPE RGDSYLTQRASDSYLTQLMQAGVDVRRYRGGFLHSKLMVVDRRIVGVGSANMDFRSLEIN LEVMAFVYDRLIAEELCKTFEVDLQSCHQLTLAEWDKRPLWIRSWEAVARLFSPLL >gi|228308807|gb|ACLR01000047.1| GENE 3 3078 - 3710 876 210 aa, chain + ## HITS:1 COG:TP0988 KEGG:ns NR:ns ## COG: TP0988 COG2095 # Protein_GI_number: 15639972 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Multiple antibiotic transporter # Organism: Treponema pallidum # 24 198 91 269 278 73 27.0 3e-13 MENLWNSVLSDFEHFTLPSFFATFMILFVSIDIIGAIPIALSLKEKGKVFHPSKVAIISA IMFMAFLFIGEPLLSFFGVDVSSFAVAGSIVLFVLAVEMIFGIQVFQDDDPSGNADIVPL VFPLFAGAASFTAILTMRSSGTANSTLFVAIILNVVCIYLMLRTVSLLERWLGKGGIYIL RKFFGVVLLAISVKFFMQNLMIILEPFFGK >gi|228308807|gb|ACLR01000047.1| GENE 4 3844 - 6141 2645 765 aa, chain - ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 189 359 122 291 292 104 38.0 6e-22 MLHSIIRRGLMTMLMGLALCSLQSYAASRILFTTALPVGSTITLTLSADGAVTAQGLAGS ILADGKAHAYTLESAEVKLSGAITAITLSHQKLSALDIRQAKELTELRCVDNNLTELNLS FAKGLQHLDCTFNQLEQLNIPKASALKELRLKGNYVKSLDLDQCPDLEILDYADNYYPAF IDLSKCPKLQQLDLAKNQFRSLDLSHNGALRSLSCGENEISSLDLAHLSSLERLSVANCS NLSKLTLGEQSKLRYLDLYGTGVRSLDFSKFPLLEELSCAYGQLASLDLSHNQNLRILSC AKNPFAGLDVSHCPLLEELSCGDLQIKSIDLSHNPKLVSLRIGHNNLSQIDLSAQKELKT LHLFYNNISKLDLSAQTHLEELLCNDNQLSSITLPASAPLRQLDIYDNQIKESQMAQIIA QLPNRTGQTRGLFKVVNSPSTLEGNVCTKALVEQALGKYWRVVDYADFADSGNGLDYRGS DAPELGESVVKFTFDKAGSTVQLTVGGLGLLESTGTTKPITNSKDPVTYTLEGNELTIHG DVYKLIVSGATIQAVELTKATYLRELELHDYQPATITLAELPNLVSLRLHDNQLTSIQLS GTPLLNYISCYGNKLTVEAGKDVIASLPKRLEAERATILWLNSKGAGVDNAFAKELQLLA QAKGWTMSDYLDGSKGDTGAPIEIPTFIHPIVPVATHAVQIRLTADALQISAAPHTSIAL YDLSGQLQLQTETDAEGLRELPLTACPAGLYILATPSEAVKVVIP >gi|228308807|gb|ACLR01000047.1| GENE 5 6155 - 8671 2820 838 aa, chain - ## HITS:1 COG:no KEGG:TDE2003 NR:ns ## KEGG: TDE2003 # Name: not_defined # Def: internalin-related protein # Organism: T.denticola # Pathway: not_defined # 49 378 43 413 424 115 26.0 5e-24 MNHRLLIATLLALLGMAIYAPLPAQQAGESNVITIKLSAMPTDDDDQPTTLPLAVQGEGI TIEGVAEAYAADRSSYKPTALEIKIRGAVKSIRCDYANVLSAMDITSSKTIEQLNVKNSG MTDLQVKGVTSLQELICARTSIPALDLTGCTGLTKLEANSCMKLTSVTLTGCTALEEIQL QNGEIKTLDLSGLTKVKSLQLERNPLATLQVAGLTKLTTLNVEGTKLTALSLSDCTALEM LTASRCGDLATIQLPKTGQLQYLYLSDCKPLQTVDLTGLTGLKEAYLEHNKSLTKVIVSD CPNLKLLSLYLSALPAEATLAVVNGLADHSADYDAMKPAFKVYAKGVKFDYTEANVWTPK AASVARRKGWTLYSKNDNDNSIPKPLYSDYAKVTIEKTEHGKVALEGLDAEDLALLPVGE TYKVVATPDEGYQLETLKLNDEDILKDMQFDLMADGKVTATFAKGSVYQYYLTKVEPSKP HPDLYTYTYGYDDNKRWTSRTETKADGSISQHNSISYDAKGRISDIATTISTDYDGDGKP SMFAHFTYDDQGHMTGRQMKLYDNLMANYKILYRPDGQVDYWVDEKAQVMSEYTYNDKGQ LIEEQFGKPDLSQDRPTITTLSGKTFYTYNEKGQKSEVKSSAAQFEWKYFKGEAYKWDNN GLLTTYQAINFEYQEGEKDADKGVAKPVYELRFQYAPEQTAKVFWPKRPFTEGGGTLAEF LYELTGHCQKAEYWSLSDGKEKHFMDFVYTFEASPRHLQELVDRGATTVQYAYGTITAEG ASLEGLQVYDTTGQLLRDYRTAPCQRIDMGVSELPDGLYIVRTISSDSTQTDKVVITQ >gi|228308807|gb|ACLR01000047.1| GENE 6 8956 - 9123 106 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLRKKDFEVPKNFFVPPWRFTDSHRGSPKFLRGELRELAIYDILTGVSSTVEAI >gi|228308807|gb|ACLR01000047.1| GENE 7 9340 - 10542 1617 400 aa, chain + ## HITS:1 COG:FN1419 KEGG:ns NR:ns ## COG: FN1419 COG0626 # Protein_GI_number: 19704751 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Fusobacterium nucleatum # 6 399 2 395 395 541 64.0 1e-153 MIDPKELQQMGFATRAIHAGSEHNQHGTLATPIYQTSTFVFDSAEQGGRRFALEEDGYIY TRLGNPTCTAAEQKVASLEGGEACVSASSGIGAITSAIYPLVQAGDHIVAGKTLYGCTYS FLEHGLSRFGVEVTFVDARNLNEIKAAMRPNTKLVYIETPANPNMYLTDIEGAAKIAHSQ EGTVLMVDNTYCTPFITRPLDLGADVVVHSATKYLNGHGDVIAGFVVGRKEYIDQVRLFA VKDMTGSVLGPFEAYLIARGIKTLEIRMERHCANAQRVAEFLEKHPAVASIAYPGLKSFP QYELAQKQMRLPGAMIAFELKGGLEAGRKLMNSLHLATLCVSLGDAETLIEHPASMTHSP YTPEERAASDIGEGMVRLSIGLENVEDIIADLKGGLDALL >gi|228308807|gb|ACLR01000047.1| GENE 8 10717 - 11301 723 194 aa, chain - ## HITS:1 COG:aq_1731 KEGG:ns NR:ns ## COG: aq_1731 COG0212 # Protein_GI_number: 15606807 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Aquifex aeolicus # 10 194 3 183 186 126 35.0 2e-29 MSCDRVREEKKALRRTIRTKMRSEWTEEYRQTVSERVCEQIETFLPFVRSHSIALYCAMA DEVDLTAILERYQGEKRLLIPRVEGDDINFYTYQSDSLVTSEDYKILEPTAAVEEAVDPA EIELILVPGLAFDPHGGRMGRGKGYYDRFFARCPHALRVAVTSSMQIVDQIPLEPWDVTM HYIISDSKTYEVRD >gi|228308807|gb|ACLR01000047.1| GENE 9 11298 - 12893 1525 531 aa, chain - ## HITS:1 COG:aq_797 KEGG:ns NR:ns ## COG: aq_797 COG0793 # Protein_GI_number: 15606169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Aquifex aeolicus # 37 346 39 346 408 186 34.0 1e-46 MRRQYKYLLCLVAGALIGSLAFWLISRYRSFTHADKFDQVLQLIDKYYVDSVDMEELRTN LLPYLLGALDPHSTYIPPLESEREAQRLEGQFEGIGIIYNIITDTIVVDQVFAGGPSETA GLEPGDRILACDGKSLLGERNNQDTITSALRGPAGSVVRLSVLRRNARRDVSVVRGPVPI QSIEVSYMLTPTIGLMQITTWARTTYDEFIQHWGALQRAGAKALVLDLRDNTGGYMNSAI AVANEFLQEGQLIVYTEGRTMPREDVVANGEGMLQRLPLVVLVNENSASASEIFSGAMQD HDRAMIVGRQTYGKGLVQQPFTFADKSSVRLTVARYYTPSGRNIQRPYEQGSLSSIEESL MSVSGIKPVGDYADTLSLTKQKQREYHSDNGRLLFSGYGIMPDIFIPQDTAMINAYAARL IMSGLMQEYAFYFVDLNRESLREMHSVQELLDLLAQEKSLITDLAAYAAERGIAQRPQML RQASRRLQLQMYALIANHLFGATGFYQVITQDDPMISSAEQYIEDNYHTQR >gi|228308807|gb|ACLR01000047.1| GENE 10 12929 - 13417 531 162 aa, chain - ## HITS:1 COG:AF1764 KEGG:ns NR:ns ## COG: AF1764 COG2131 # Protein_GI_number: 11499353 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Archaeoglobus fulgidus # 15 159 2 157 157 112 38.0 4e-25 MKTFTPTTASAPDSKQTILDRRYLRMARIWAENSYCQRRQVGALIVHNQMIISDGYNGTP SGFENVCEDDEGITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLECAKLIIQSRI RRVVYGEQYRLTDGLELLKRAGVEVVYIPLDTTSSDTESSTH >gi|228308807|gb|ACLR01000047.1| GENE 11 13533 - 14273 923 246 aa, chain - ## HITS:1 COG:slr1258 KEGG:ns NR:ns ## COG: slr1258 COG2859 # Protein_GI_number: 16330444 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Synechocystis # 25 246 32 251 251 106 31.0 3e-23 MDMTKQWTFWAALALAVAFVIGIWIAGSTYQSVRNPRIVSVTGNAEQDFESDLIVWSASF RVHRATLSDAYTEIERERTVVQEFLQKAGLKADGYTFESLEVSQDYNNGYDTHGNYQQVP NGYVLTQSVTVTSKDLDGVESLSKSISSLISQGVEITSRAPAYYYTNLDDLKHQMLRQAS EDALNRAEEIASGSRGKVGKLQNASMGVFQIVGKNAGEDYSWGGAFNTSSRHKTISVTVR ATYALR >gi|228308807|gb|ACLR01000047.1| GENE 12 14328 - 15275 739 315 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 10 310 5 303 306 289 50 2e-77 MSQDKTIRCLIIGSGPAGYTAAIYASRANLSPVLYQGLQPGGQLTTTTEVENFPGFPEGV TGPQLLEQMRQQAERFGTDIRSGEVTRIDFSKRPFEVEIDGSTELTAQAVIIATGARAKY LGLDDEKKYAGMGVSACATCDGFFYRKKRVAVVGGGDTACEEALYLAGIAEQVYLIVRKD HLRASKVMQERLFARENIEVLFEHNTVGLFGDNGVEGAHLVYKKGTPEEAKRDIAIDGFF LAIGHKPNTDFLAGQLELDEAGYIVTREGRPLTSVEGVFAAGDVADPRYRQAITSAGTGC RAALEVEKYLLEKGL >gi|228308807|gb|ACLR01000047.1| GENE 13 15473 - 15748 251 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 91 1 91 91 168 100.0 9e-41 MDTRTERSYFLLFLFPPEEISNSSRENDISSRSREIKVRKNEMKLRKKDFEVPKNFFVPP WRILVFYRGNFDFLGGVVSGASKGVGVHRGS >gi|228308807|gb|ACLR01000047.1| GENE 14 15778 - 16623 843 281 aa, chain - ## HITS:1 COG:BS_yabH KEGG:ns NR:ns ## COG: BS_yabH COG1947 # Protein_GI_number: 16077114 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Bacillus subtilis # 7 254 9 255 289 155 35.0 9e-38 MILHPHAKINLGLRILHRRPDGYHDIESCMLPIGWADQLAVEIATGAAEDSYEIAGLAGE LPIERNLIYKAVQLLRAHHRDIPPLRLKLEKRIPSEAGLGGGSADAAYTLLAVNELCHLG LATAQLETLAGELGSDCPFFIQSRPVLVTGRGEKLTPLTMPSALHGKWLLVVKPPIGMST AEAYRQVIRHPEAEGKLATLLERPIGEWRELIVNDFEPVVFAHYPELAALRDKLYHHGAL YAAMSGSGTALYALFTDNPLSSTSLTAHFADLPVWLERLSL >gi|228308807|gb|ACLR01000047.1| GENE 15 16643 - 18787 1961 714 aa, chain - ## HITS:1 COG:L0268 KEGG:ns NR:ns ## COG: L0268 COG0514 # Protein_GI_number: 15673790 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Lactococcus lactis # 88 439 7 361 592 311 45.0 3e-84 MSSHNDLERTSLPPSDETAGTPSGRGEAVDWDLLLEEQDNLWRDVATDPRADTEREWLGE KPSQPTGDRPEKAGTASADDEATPLGVLHRYWGYPTFRLKQAEIIESVLAGRDTLGLLPT GGGKSITFQVPTMLHDGLTLVVTPLIALMKDQVDGLNKRGMSATAIHSGMEYKEIQRALD NCLYGGCKFLYLSPERLASPLFLACLPELPIRLIVVDECHCISQWGYDFRPSYLKIAEIR RYYPAVPLLALTATATPEVVADVMARLSFRKPHVISSSFARDNLQYIVRPTMDKATELLH ILASTSGSAIVYCRNRKKTQELTEMLQETGISAHYYHAGLTHAEREIKQNAWMAGEVRVM VCTNAFGMGIDKPDVRLVVHWSMPVALEEYFQEAGRAGRDGQRAFAVVLYERRDRGMLLQ RVQNEFPDKAYIRDVYDTLYSYLGIGLGEGMERSYEIDLEAFVRTEHLHPIRSLSALHIL ELAGAWELLLDEARSRLIVEVSREELYYIRGLSAQDDKVLRAVLRNYSGLFADYVFIDER TLSIQTHLTGEAVYESLVRMSQRGIIHYIPRKRLPRILFYTRRERKHHFLIPPEVYELRK EAMTKRLTATVAYLDSQQGCRQSMLLHYFGEELAVPCGRCDLCLARKARSQRSEETLEVR LKALLEQMEEPSPTLRDLAKSLGVKTKALLPILQKLLEEDDRYRTDGVHLYKNK >gi|228308807|gb|ACLR01000047.1| GENE 16 18738 - 20519 1765 593 aa, chain - ## HITS:1 COG:lin1560_1 KEGG:ns NR:ns ## COG: lin1560_1 COG0608 # Protein_GI_number: 16800628 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Listeria innocua # 18 516 18 505 562 337 37.0 5e-92 MTNEWQYTPFTPEEEVGGSQLAHALRIPAVAGRLLYRRGIRTEAEAQRFFHPSLEDLHDP FLMQDMDLAVKRLNKALGRKEHIMIYGDYDVDGTTAVSLIYKYLRSAGCSEHLLSYYIPG RDDEGYGVSYRGVDHAHEIGATLIIVVDCGIKAINEIAYAKTLGIDFIICDHHHPDDQLP DAAAVLDPKRPDCHYPFEELCGCGVAFKFMQAFGMDNGFPSASLFKLLDLVAVSIAADLV SVMDENRILAHYGLRQLNRNPSMGLKGIIKTCGLEGRKITMADIIYKIGPRINASGRMMN GREAVDLLLSNDAKTTARMSELIDEYNVRRRELDRSTTDEAMQLLQVNPELAHQPIVVLY QPDWHKGIIGIVASRVAEYTNRPTIVLTGTSDRIVGSARSVGGIDIYSIIEEARDLLLNF GGHTYAAGLTLLPDKLPDFRAYIQSVNAVVDTDRAQSTPIEVDAEIELREVTQRLYTTIQ RFAPYGPDNYQPLFVTQQLYDGGGSKAVGRNGEHFKVDAIPSLGSRKHCPGIAFNQAPAF RFIKKSSAGRASAPFALVYQIDENHFNGVVSLQLLVKDVKPQRPGEDLFASQR >gi|228308807|gb|ACLR01000047.1| GENE 17 20853 - 22382 1697 509 aa, chain - ## HITS:1 COG:CT808 KEGG:ns NR:ns ## COG: CT808 COG1530 # Protein_GI_number: 15605542 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Chlamydia trachomatis # 2 462 17 468 512 240 31.0 4e-63 MAVLEDGELVELRTENRNIRYAVGDILLGEVDNVVRGNNAAFVNIGPMKNGFLHYNDLGK VFGATTHLLEDIAEKKKVPPIDKVKEGEPLPKDGNIINSGLKKGDKILVKVTREAFGTKG PSLSAELSIAGRFLVLVPFSDQVAISSEIRSTEERTRLKTIVHSVIKSGYGAIIRTQAAG KKTQELVEEMMDLIDRFETSIKKLVRAKAPTQIYEERNRAINLIRDSYNKSFTKIVVNDP DYYKELRGYVADIDPGREQIVTLYEDDAKRPLFDACGVTKQKKTLFGRKVTLRSGANIII EQTEAMHVIDVNSSKKARRTSGQEETAFDVNMAVADLIARQIRLRDLGGIIVIDFIDMNE AAHNKELYEHMVKLMANDRATHKILPLSKFGLMQITRQRVRQATIIRTEETCPTCQGTGK IKTSITFTDDLEEMIAQLTTGDKPIRNFAMHLHPYVVAYIKKAPLLGSSLFTKWKKKYSK NIKLIEDQDVALLDCKIYDKDRNLITLEK >gi|228308807|gb|ACLR01000047.1| GENE 18 23154 - 23426 339 90 aa, chain - ## HITS:1 COG:BS_hbs KEGG:ns NR:ns ## COG: BS_hbs COG0776 # Protein_GI_number: 16079336 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Bacillus subtilis # 1 85 1 85 92 64 36.0 4e-11 MTKAEVVKSIADTTGVDRQEVLQVVEAFMDTVKNAMSQGDNVYLRGFGSFVVKERAEKTA RNISKQTTIIVPARKVPTFKPSKAFTAMIK >gi|228308807|gb|ACLR01000047.1| GENE 19 23466 - 23669 64 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469618|ref|ZP_04054598.1| ## NR: gi|228469618|ref|ZP_04054598.1| hypothetical protein PORUE0001_1560 [Porphyromonas uenonis 60-3] # 11 67 1 57 57 109 100.0 7e-23 MSATTQRCGQMYIKQPTPTCSSAKEIEECSRSGPRTLLFFVIYTRLWYQPYVMKNSLEER EVAGKAF >gi|228308807|gb|ACLR01000047.1| GENE 20 23820 - 24071 407 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228469629|ref|ZP_04054609.1| ribosomal protein S20 [Porphyromonas uenonis 60-3] # 1 83 1 83 83 161 100 5e-39 MANHKSTLKRIRQSSTRRLRNRYASKTSRTMIKQFRAMTDRQEAEQALPKVYSTLDRLAR KNIIHRNKAANLKSKMALHLKSL >gi|228308807|gb|ACLR01000047.1| GENE 21 24407 - 25303 878 298 aa, chain - ## HITS:1 COG:MTH872 KEGG:ns NR:ns ## COG: MTH872 COG0061 # Protein_GI_number: 15678892 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Methanothermobacter thermautotrophicus # 11 294 3 276 283 171 34.0 2e-42 MQADSQMDRHKINTIAVYGSHDTLRLTDDVAALLTALAEHGVDLYIETPLWEALSQAGIP EGYPQMRLGGETPYGDIALSLGGDGTLLRAVHKLRDVELPIWAINCGHLGFMTEMEPQEA WHHLDDLLAGQYSIETRTLIDVSVAGEHVGTALNDLAVQKRETGSIIKIRADLDGDLLAE YAADGLVVSTPSGSTAYALSLGGPIVTPQCQTLLLVPIAPHTLNMAPLIFPDTSVLTMRV SSLHPTFSIVIDGNLRVYDCGVEIVARKSDKRAHLLRLSHKPYTQVIREKLLWGRDLR >gi|228308807|gb|ACLR01000047.1| GENE 22 25274 - 25522 185 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 39 82 17 60 91 69 77.0 6e-11 MPIHLAICLHCYKSTEKQGDPKAPNHPSTETLTSKCVAPEEIANLQRGNENSPRSREIKV RKNEMKLRKKDFEVPMNFSFPP >gi|228308807|gb|ACLR01000047.1| GENE 23 25730 - 28252 3159 840 aa, chain + ## HITS:1 COG:MA3477 KEGG:ns NR:ns ## COG: MA3477 COG0370 # Protein_GI_number: 20092288 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Methanosarcina acetivorans str.C2A # 110 836 7 665 670 523 39.0 1e-148 MKLSELHNGDRARILSVGGHGAFRKRILEMGFVQGQVVEVIQAAPLRDPIYYRLMDYNVS LRRKEAGLITVELIDSDSTSEELPPLAHAFVHEGAGASLTESAVSERVAISRSLRVALIG NPNSGKTTLFNHASGAHERVGNYSGVTVEAKEAHFDYQGVRYELIDLPGTYSLSPYSPEE LYIRDYLTNEETRPDVVIDVLDVTNLERQLYLAVQVREMGIPMVTALNMWDEFEQKKNQL DVQQLSDLLGTPMVPTICRKGVGVFELFDKVRQLVDDNLYADRRFLQINYGTDLEQSIAT LQKKITEQATFPDHLSPRYLAVKLLEGDPHMRSFIKQQPKGEYLLTATAYEENMLRKNHS NEEDLENYIINQRYGFIAGALRETYRPNKRRIRTITDRIDNLLIHPIWGYPIFLAFLFIM FEATFALGAFPMDWIEAGVDAFGAWIHGMMSPGPLRDLLVTGVIGGVGGVLVFLPNILIL YLFISIMEDTGYMARATFLMDKLMHHMGLHGKSFIPLIMGFGCNVPAVMASRTIESRQSR IITVLVTSLMSCSARLPVYILIAGTFFPQSAGLVLFGLYALGVLLAFLLAKLFRRVLFKS EDLPFVMELPPYRIPMARAVGIHMWDKAREYLHKMGSVILVASVIIWALGYYPREEVMSR ADEQIAQVQQQSTLSESERSEQVAEIERQAYMEQQEGSYLGRIGQTVQPVLAPLGFDWKL SVALVAGLPAKEVVVSSLSVIYTGNETVDEDSEDFAVGSSALSRQMRQEKDPVTGEPLYT PLIAICFLIFVLIYIPCVATVVAVSKELNSGWWGLFVVVYTCVLAWIVAYLARLIGLLII >gi|228308807|gb|ACLR01000047.1| GENE 24 28754 - 29135 339 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469616|ref|ZP_04054596.1| ## NR: gi|228469616|ref|ZP_04054596.1| hypothetical protein PORUE0001_1566 [Porphyromonas uenonis 60-3] # 1 127 1 127 127 226 100.0 4e-58 MKRHIIYSILLLPLLLLSLVSCDKLVYDRGECPTILVFTPYTQTPCMSDSAYIGKAGYMD IVISVPSSGEIIAYKHLEPADLTAASRIEIPVPNECGETYRYTIWVGATPQHYTMSDLAP ASGNKHP Prediction of potential genes in microbial genomes Time: Fri May 27 09:06:09 2011 Seq name: gi|228308804|gb|ACLR01000048.1| Porphyromonas uenonis 60-3 deg1118640599734, whole genome shotgun sequence Length of sequence - 534 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:06:10 2011 Seq name: gi|228308797|gb|ACLR01000049.1| Porphyromonas uenonis 60-3 ctg1118640599589, whole genome shotgun sequence Length of sequence - 3106 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 388 310 ## gi|228469642|ref|ZP_04054620.1| hypothetical protein PORUE0001_0272 - Prom 435 - 494 3.0 - Term 566 - 631 20.4 2 2 Tu 1 . - CDS 638 - 2239 1961 ## PGN_0287 Mfa1 fimbrilin 3 3 Tu 1 . + CDS 2897 - 3104 243 ## gi|228469938|ref|ZP_04054867.1| transposase Predicted protein(s) >gi|228308797|gb|ACLR01000049.1| GENE 1 1 - 388 310 129 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469642|ref|ZP_04054620.1| ## NR: gi|228469642|ref|ZP_04054620.1| hypothetical protein PORUE0001_0272 [Porphyromonas uenonis 60-3] # 1 129 1 129 129 228 100.0 8e-59 MKRHTIYSILLLPLLVLSLVSCDKLIYDRGECPTILVFTPYMQTPCMSDSAYIGKAGYMD IVISVPSSGEIIAYKHLEPADLTAASRIEIPVPNECGETYRYTIWVGATPQHYTMSDLAP ASGNKHPDC >gi|228308797|gb|ACLR01000049.1| GENE 2 638 - 2239 1961 533 aa, chain - ## HITS:1 COG:no KEGG:PGN_0287 NR:ns ## KEGG: PGN_0287 # Name: mfa1 # Def: Mfa1 fimbrilin # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 10 530 11 563 563 227 33.0 9e-58 MNRTVRTLLGLLTIGLVALTSCKKDQKEPHQNEGTTYVNVAISIPTGLRATPGEGDDDEY NPKGKWNGKDAIENITVYVVDKNSVSWDGYTKADFDITPATSTTNITITTKKAILTTPGN KKVYVVINAPQAIKDYLNKAIPNEFEQAYEKAVSVIAAKEATKVDGDGNDVILMTNATAP AEQTIEDGVTAEKAKNGLKNQIKVQVQRAVARVILTTTKPEYEIVRADGVVLGKIKNITY AVAQGENSFYLTQKRLNSSSSRGVVKTLGYNFIPKTDNPGVLPAKGYTDMENFYDYSDLV ETAKPGQAREALVADDLNSALAIGEKSLKSSAFIFENTHKYGAYDIFNYKGGYRRANTAY VLVRATFVPNNDAFADKAKFTEPYKEGETFYVGENGALYRSAINVTDEKSSGAGGVEGQK YSEYKNGKVLYYAIVNPDKTERPLNAPVYRNSIYHISVTGFKKIGVNWNPLFPEDPDSDN PKNPDPKPKDNPNEPVPPIKPEDNLSPKETYMAVDVTVVPWSVHTYNIELTIP >gi|228308797|gb|ACLR01000049.1| GENE 3 2897 - 3104 243 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 69 1 69 84 139 100.0 7e-32 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFCCE Prediction of potential genes in microbial genomes Time: Fri May 27 09:06:28 2011 Seq name: gi|228308795|gb|ACLR01000050.1| Porphyromonas uenonis 60-3 deg1118640599626, whole genome shotgun sequence Length of sequence - 510 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 508 304 ## gi|228469953|ref|ZP_04054876.1| conserved hypothetical protein Predicted protein(s) >gi|228308795|gb|ACLR01000050.1| GENE 1 1 - 508 304 169 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469953|ref|ZP_04054876.1| ## NR: gi|228469953|ref|ZP_04054876.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 14 169 3 158 244 282 97.0 6e-75 SLLLEFKLSEQSGGGNTPSPDNSQIPPIGDVAQGENGNYYINGADTGIAIKPNHKPVVTI VDGYYYIDGVKTPVPAPPAPVAPQYPNGVLVPALKKQGKYEVLLISKSPEVTYTDPTTNE KRKVVANGVRIEDGACLYQCLSPDSVPVPFATISGLPRIPDKRYQTDKN Prediction of potential genes in microbial genomes Time: Fri May 27 09:06:37 2011 Seq name: gi|228308791|gb|ACLR01000051.1| Porphyromonas uenonis 60-3 deg1118640599710, whole genome shotgun sequence Length of sequence - 963 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 481 - 540 3.1 1 1 Tu 1 . + CDS 775 - 961 65 ## gi|228469649|ref|ZP_04054625.1| hypothetical protein PORUE0001_2003 Predicted protein(s) >gi|228308791|gb|ACLR01000051.1| GENE 1 775 - 961 65 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469649|ref|ZP_04054625.1| ## NR: gi|228469649|ref|ZP_04054625.1| hypothetical protein PORUE0001_2003 [Porphyromonas uenonis 60-3] # 1 62 1 62 63 115 100.0 7e-25 MFVMKRLDLDVKVRYYTRHNKSYQGDSPIMIRLYVQGERASLGQVGYSVRPCYLVNNKVV AT Prediction of potential genes in microbial genomes Time: Fri May 27 09:06:42 2011 Seq name: gi|228308788|gb|ACLR01000052.1| Porphyromonas uenonis 60-3 deg1118640599499, whole genome shotgun sequence Length of sequence - 766 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:06:42 2011 Seq name: gi|228308785|gb|ACLR01000053.1| Porphyromonas uenonis 60-3 deg1118640599591, whole genome shotgun sequence Length of sequence - 516 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 23 - 514 690 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|228308785|gb|ACLR01000053.1| GENE 1 23 - 514 690 163 aa, chain - ## HITS:1 COG:NMA0772 KEGG:ns NR:ns ## COG: NMA0772 COG3547 # Protein_GI_number: 15793747 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Neisseria meningitidis Z2491 # 1 152 164 314 321 67 29.0 7e-12 KAIDLLTKSIKECERRMLEIIKEDEEMYRHYLHLISCKGVGLVTSVMLIVFTDNFKGWSA KKMASYCGIAPFYESSGSSVFHKSNTGGYSNRRLKGILTQAARSAITHNPTFKQYYQRMK AQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRALRA Prediction of potential genes in microbial genomes Time: Fri May 27 09:06:45 2011 Seq name: gi|228308771|gb|ACLR01000054.1| Porphyromonas uenonis 60-3 ctg1118640599759, whole genome shotgun sequence Length of sequence - 11310 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 5, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 202 248 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 247 - 306 1.5 2 2 Tu 1 . - CDS 443 - 1513 893 ## PG1490 TraG family protein - Prom 1670 - 1729 1.7 + Prom 1479 - 1538 2.5 3 3 Tu 1 . + CDS 1563 - 1985 192 ## + Term 2004 - 2056 4.4 4 4 Op 1 . - CDS 1827 - 3110 394 ## PG1489 hypothetical protein 5 4 Op 2 . - CDS 3110 - 3487 223 ## PG1488 hypothetical protein - Prom 3701 - 3760 5.0 + Prom 4021 - 4080 1.7 6 5 Op 1 . + CDS 4116 - 4907 422 ## PG1486 conjugative transposon protein TraA 7 5 Op 2 . + CDS 4904 - 5449 293 ## gi|228469663|ref|ZP_04054636.1| putative conjugative transposon protein TraC 8 5 Op 3 . + CDS 5446 - 6201 422 ## gi|228469660|ref|ZP_04054633.1| conserved hypothetical protein 9 5 Op 4 . + CDS 6256 - 6573 415 ## Fjoh_3006 hypothetical protein 10 5 Op 5 . + CDS 6573 - 6899 157 ## PG1482 conjugative transposon protein TraF 11 5 Op 6 . + CDS 6896 - 9415 2707 ## COG3451 Type IV secretory pathway, VirB4 components 12 5 Op 7 . + CDS 9442 - 10071 649 ## PG1480 conjugative transposon protein TraI 13 5 Op 8 . + CDS 10104 - 11141 838 ## PG1479 conjugative transposon protein TraJ + Term 11275 - 11310 2.0 Predicted protein(s) >gi|228308771|gb|ACLR01000054.1| GENE 1 1 - 202 248 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 67 1 67 84 134 100.0 1e-30 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFC >gi|228308771|gb|ACLR01000054.1| GENE 2 443 - 1513 893 356 aa, chain - ## HITS:1 COG:no KEGG:PG1490 NR:ns ## KEGG: PG1490 # Name: not_defined # Def: TraG family protein # Organism: P.gingivalis # Pathway: not_defined # 1 351 1 351 669 610 80.0 1e-173 MAQEDDLRALGKIMDFMRGISVLFLLLNCYWFCYEAFHTWGFTLSVLNKILMNFQRTAGL FSSILWTKLFCVLFLALSCLGTRGVKEEKITWAKIWTVLTIGFVLFFLNWWLLALPIGVV GAASLYIFTLSVGYICLLMAGVWMSRLLKNNLMDDVFNTENESFMQETRLMENEYSVNLP TRFYYKKKWNNGWINVVNPFRASMVLGTPGSGKSYAIVNNYIKQQIEKGFAMYIYDYKFP DLSEIAYNHLRNHLDAYEVKPKFYVINFDDPRKSHRCNPINPAFMTDISDAYESAYTIML NLNRTWIQKQGDFFVESPIILLAAIIWYLKIYENGKYCTFPHAIEFLNRPYFNFAE >gi|228308771|gb|ACLR01000054.1| GENE 3 1563 - 1985 192 140 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKLRCFPFSPNCIFTEKTVDTYVTIFYFPRRGDLFPRKFHSILPKFDFILPNYHFVLPW RFLLSPVSISNFLREECDAVLFIIPCLDLPLPSSEMNLALSAKFPLPSRFFPIIVATTER EVTDNVIYQFIDKVVSIVRI >gi|228308771|gb|ACLR01000054.1| GENE 4 1827 - 3110 394 427 aa, chain - ## HITS:1 COG:no KEGG:PG1489 NR:ns ## KEGG: PG1489 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 427 1 425 426 376 48.0 1e-102 MIAKISATENLGGALGYNFKKVNKKEATLLLAHGLYQNRAGEYTMSEVLADMQALIPEKC RTKKTVFHCSLNPHPDEKLSDETLSQIAKEYMVALGYGKQPYIVFKHNDIAREHIHIVSL RVDGDGRKINDKFEGRRSKKITDALEKKYHLIPSTEVTDKPLQELSKVDMAKGNIKKQVA SIARSVLKHYRFCSLGELNAILTQYNLAVEEVKTEFRGKKYDGLVYVPTDDKGDKVSTPF HASEIGRGVGYTAVQNRMQQSKQAIKPLIPAVKEKVLQVMRTSPQTEEALRHRLEEQGLR TVIRKNESGRIYGITFIDDENGIALNGSRLGKGYSANTFNAYLSNPTYNPFMDKTLYGTS SAQLKEEAPTVQPLQSDADDGDNLVDELVDDIVGDLPLGSSNDDWKEAAWQRKLRRQSKV HLRRRKR >gi|228308771|gb|ACLR01000054.1| GENE 5 3110 - 3487 223 125 aa, chain - ## HITS:1 COG:no KEGG:PG1488 NR:ns ## KEGG: PG1488 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 10 125 14 128 133 112 50.0 4e-24 MNGKIERWDRWDTRLPNPKDQQRAIDLFHKSGAETKSDFVRARILGEHFKVITVDKSAVE YYRKLSELTAQIHKIGVLYNQAVRAINSYHSVKTAQILLEKLKQLSAQIITLQEQAISLT IDYRK >gi|228308771|gb|ACLR01000054.1| GENE 6 4116 - 4907 422 263 aa, chain + ## HITS:1 COG:no KEGG:PG1486 NR:ns ## KEGG: PG1486 # Name: not_defined # Def: conjugative transposon protein TraA # Organism: P.gingivalis # Pathway: not_defined # 5 258 8 262 269 192 37.0 7e-48 MDRSNSRPLYLGFASQKGGVGKSTLAEVLASILYYEKDIPLVVVDCDGTQESFFKLRERD RDLIGTSPDIGKALHERLAQYGKKSYQIIRSNLEQAISNTEQYLSKAPIAPQLVIFDFPG HVATSAMMELSIMMDYIISPIEADPQSLASSFAYAKTIQELGVGFAESQIQDLFLLWNKV NRSASTMVIELFSQHAQEQGLKILDARIYHSVRFSRELAQGGVKGVFRCSYLPPATTLRP QTGVDEWVEEVIQKLGLQKGTSV >gi|228308771|gb|ACLR01000054.1| GENE 7 4904 - 5449 293 181 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469663|ref|ZP_04054636.1| ## NR: gi|228469663|ref|ZP_04054636.1| putative conjugative transposon protein TraC [Porphyromonas uenonis 60-3] # 16 181 1 166 166 248 100.0 1e-64 MSSLKEQRERLLQAKMREMANIGVTKRTAENIPDFDEPIDLDEEPMLEENPTLEENPTLE DECNAVSETEETTASTPTTSPQASQRHSSKKKSTPRSCSSTLEFAAYEERFLISVRDGRN KSGFSIHTEVLQLLRNVVSDLRVETSITSYIENIILDHLKTHQELLNQIASQRRRDKTID L >gi|228308771|gb|ACLR01000054.1| GENE 8 5446 - 6201 422 251 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469660|ref|ZP_04054633.1| ## NR: gi|228469660|ref|ZP_04054633.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 251 1 251 251 361 100.0 2e-98 MIEETLRCLLLLLGIVWVIFGITYWRRLLNSSKQDPIRKAAAKKEKTEKADSNQERKELV RDELVGKSKPFVSSSFPMVPKSSSSEKADDNPATFAELDSDKSTPRDDATEPLEAESETI PEAENEIQVAYTMEDLDEESILREELQIASEALPELSPTAILARDLSRISQWSKQEDSLT NENEEEVCQTLRTLRGTELMDRLKEYTLEVEEAHRNLFATLRKAEELEEEPAPSQAETEA GEEEKPLSYYL >gi|228308771|gb|ACLR01000054.1| GENE 9 6256 - 6573 415 105 aa, chain + ## HITS:1 COG:no KEGG:Fjoh_3006 NR:ns ## KEGG: Fjoh_3006 # Name: not_defined # Def: hypothetical protein # Organism: F.johnsoniae # Pathway: not_defined # 5 105 26 127 127 144 79.0 9e-34 MNRRMISKERLAMLALTLMMTGATAFAQGNGMAGINEATKMVTSYFDPATKLIYAIGAVV GLIGGVKVYNKFSSGDPDTSKTAASWFGACIFLIVAATILRSFFL >gi|228308771|gb|ACLR01000054.1| GENE 10 6573 - 6899 157 108 aa, chain + ## HITS:1 COG:no KEGG:PG1482 NR:ns ## KEGG: PG1482 # Name: not_defined # Def: conjugative transposon protein TraF # Organism: P.gingivalis # Pathway: not_defined # 4 101 2 99 111 148 72.0 6e-35 MASWEVNKGVGRTVEFKGLKAHYLFLFAGGLLGIFILVVILYLCGISQIICLGIGVVGAT VVVWQTFAMNRKYGQYGLMKRGAIRRRPRYLLNRRSVYQLFHQLNSAR >gi|228308771|gb|ACLR01000054.1| GENE 11 6896 - 9415 2707 839 aa, chain + ## HITS:1 COG:PSLT088_2 KEGG:ns NR:ns ## COG: PSLT088_2 COG3451 # Protein_GI_number: 17233453 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Salmonella typhimurium LT2 # 264 835 6 564 593 85 22.0 4e-16 MMRNRSKITTLESKFPLLSVEHGCIVSKDADVTVAFRVELPELFTVTSAEYETMHSTWHK AIKVLPNFTIVHKQDWFIKECYHTTCKRGQEKPLSFLARASERHFNERPYLHHTVYLFIT KSNRQRMAQQSNFSTLCRGHLLPKEITNEEEMVKFMETVDQFERIINDSELIKLARMNEA ELVGSREQAALLDRYFSLSDSRHGTLEDIRLGADLVRVGDNMLCLHTLSDTDDLPTTVST DGRYERLSTDRSDCRLSFASPVGLMLPCNHIYNQYIFIEDSEANLQRFEKQARNMHSLAR YSRSNQINEEWIQEYLNTAHSQGLTSIRAHFNVLAWSDDEEELRQVKNDVGSALALMECR PRHNTIDTATLYWAAIPGNAGDFPAEESFYTFIEPALCFFTAETNYKDSLSPFGIKMADR LSGKPIHLDISDLPMKQGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGN SYQGLCELIHRKTKGEDGVYFTYTHDHPISFNPFYTDDKFFDVEKRESICTLLMTLWKSA DERVTKTEAGELGSAVNAYIELICSDASIVPNFNSFYEYLRDVYRKDMEQRDIKVTLSDF NINNLLTTLKQYYKGGRYDFLLNSDKNIDLLSKRFIVFEIDQVKDNKDLFPVVTIIIMEA FINKMRRLKGIRKMILIEEAWKAIASENMADYIKYLYKTVRKYFGEAIVVTQEVDDIISS PVVKESIINNSDCKILLDQRKYMTKFDGIQSMLGLSEKEKSQILSINQNNDPHRLYKEVW VGLGGMQSAVYATEVSMEEYLTYTTEEREKLEVMQRAEQLGGDIESAIRQLAIEKRDKQ >gi|228308771|gb|ACLR01000054.1| GENE 12 9442 - 10071 649 209 aa, chain + ## HITS:1 COG:no KEGG:PG1480 NR:ns ## KEGG: PG1480 # Name: not_defined # Def: conjugative transposon protein TraI # Organism: P.gingivalis # Pathway: not_defined # 1 209 1 209 209 272 66.0 6e-72 MKKYLLMALFAMSLFIPQAHAQWVVTDPGNFAGNIANSIKEIATASKTVKNTLSGFKEVE KLYNDTKKYYDALKQVNNLIGDAYKVKECILMVGDISEIYVTSYKKMLADPNFRPTELAA MAAGYAKLLELSGESLKELKSVAKSKVFSMNDSERMQMIDRIYTTLREYRSIVSYYTRKN ISVSYVRAHEKNDLASVKALYGNPESRYW >gi|228308771|gb|ACLR01000054.1| GENE 13 10104 - 11141 838 345 aa, chain + ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 1 338 1 338 368 518 73.0 1e-145 MDFASLHELLRSTYQEMMPLCGEMTGIAKGIAGLGALFYVAVRVWSSLSRAEPIDLFPLL RPFVLGFCIMFFPTIVLGTMNTILSPVVQGTERMVNKQTVQLDKLIAKRDKLQEAAYLRN PETAYLVSNEAFDQKIEEMGIIGPSDAVTIAGMYAERAAYKTKQWLMKQLHDLIELLYHA AALIIDTLRTFFLIVLSILGPIVFGIAVWDGLSGSLTAWFSRYISVYLWLPVSSVLSALL TKIQVLMVQKDIAALSDPNYLPDSGSWYYIVFFLIGIVGYFCVPTVAGWIIEAGGGIGAY GRNVNQTAQRGAQGAYTGGKAVAGATGSMAGNVGGRIKGALIKGK Prediction of potential genes in microbial genomes Time: Fri May 27 09:07:42 2011 Seq name: gi|228308767|gb|ACLR01000055.1| Porphyromonas uenonis 60-3 deg1118640599485, whole genome shotgun sequence Length of sequence - 610 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 610 792 ## COG3590 Predicted metalloendopeptidase Predicted protein(s) >gi|228308767|gb|ACLR01000055.1| GENE 1 1 - 610 792 203 aa, chain - ## HITS:1 COG:XF0576 KEGG:ns NR:ns ## COG: XF0576 COG3590 # Protein_GI_number: 15837178 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Xylella fastidiosa 9a5c # 5 202 126 324 700 83 26.0 3e-16 DEYRVSVLYKQAIDSVKRNELGAQPILDELKSIEAINSKKALVDFAAQQDNKGDDTFFGT YVMADAENSDMNIFNLKQTSLALGNKEYYTDPKNGEIIKAYNQYIERIAQLAGYSAEEAQ RIAKNNIAVSTQLAKMCYSQTELRDVTRNFNKVQIKKFVADNPGFDWARYIKGRNLQTLE SWNAGQLKFFKDFSKWFPTADLQ Prediction of potential genes in microbial genomes Time: Fri May 27 09:07:42 2011 Seq name: gi|228308763|gb|ACLR01000056.1| Porphyromonas uenonis 60-3 deg1118640599535, whole genome shotgun sequence Length of sequence - 503 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 336 202 ## gi|228469671|ref|ZP_04054642.1| transposase family protein Predicted protein(s) >gi|228308763|gb|ACLR01000056.1| GENE 1 1 - 336 202 111 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469671|ref|ZP_04054642.1| ## NR: gi|228469671|ref|ZP_04054642.1| transposase family protein [Porphyromonas uenonis 60-3] # 1 111 1 111 111 203 100.0 3e-51 DFKWRVIDDLLATGESIATTSQRYGITARTIRNWLRTFGVELPNQSTMSKTNKNKAVDPD YAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKRPICSRETA Prediction of potential genes in microbial genomes Time: Fri May 27 09:07:49 2011 Seq name: gi|228308760|gb|ACLR01000057.1| Porphyromonas uenonis 60-3 deg1118640599490, whole genome shotgun sequence Length of sequence - 562 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 560 254 ## gi|228469673|ref|ZP_04054643.1| hypothetical protein PORUE0001_1812 Predicted protein(s) >gi|228308760|gb|ACLR01000057.1| GENE 1 2 - 560 254 186 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469673|ref|ZP_04054643.1| ## NR: gi|228469673|ref|ZP_04054643.1| hypothetical protein PORUE0001_1812 [Porphyromonas uenonis 60-3] # 1 186 1 186 186 303 100.0 3e-81 KVYLVSSAPKAGEKQKVYLLSENTQVADVEQSTANPLSSSSTTQEEKAKGFASFPPSSPF SLSPVTPNSIPPIIPQSRHLRFAQMTQLQPRAREAKFLGADDGQLSLTDVSPHKGLRKQE ALAFVDYFNGKLATKQANIPALRSLQGSRLAELNARLREYGEDALLEAVDNLVSSEMLNG QNARGW Prediction of potential genes in microbial genomes Time: Fri May 27 09:07:57 2011 Seq name: gi|228308758|gb|ACLR01000058.1| Porphyromonas uenonis 60-3 deg1118640599512, whole genome shotgun sequence Length of sequence - 517 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:08:16 2011 Seq name: gi|228308695|gb|ACLR01000059.1| Porphyromonas uenonis 60-3 ctg1118640599764, whole genome shotgun sequence Length of sequence - 65101 bp Number of predicted genes - 61, with homology - 61 Number of transcription units - 20, operones - 15 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 741 - 1655 1352 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 2 1 Op 2 . + CDS 1689 - 2600 821 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III 3 1 Op 3 . + CDS 2634 - 4178 1950 ## PGN_1481 putative polysaccharide biosynthesis protein + Prom 4357 - 4416 2.5 4 2 Op 1 . + CDS 4503 - 5414 1026 ## gi|228469703|ref|ZP_04054671.1| cold-shock DNA-binding domain protein 5 2 Op 2 . + CDS 5441 - 6493 1239 ## PG2066 putative lipoprotein 6 2 Op 3 . + CDS 6501 - 7574 624 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 7 2 Op 4 . + CDS 7596 - 8561 825 ## gi|228469680|ref|ZP_04054648.1| hypothetical protein PORUE0001_1607 8 2 Op 5 . + CDS 8566 - 11874 3391 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) + Prom 11905 - 11964 2.7 9 3 Op 1 11/0.000 + CDS 11988 - 12335 599 ## PROTEIN SUPPORTED gi|228469684|ref|ZP_04054652.1| ribosomal protein S6 10 3 Op 2 27/0.000 + CDS 12339 - 12605 454 ## PROTEIN SUPPORTED gi|228469704|ref|ZP_04054672.1| ribosomal protein S18 11 3 Op 3 . + CDS 12631 - 13197 923 ## PROTEIN SUPPORTED gi|228469696|ref|ZP_04054664.1| ribosomal protein L9 + Term 13294 - 13358 10.2 - Term 13453 - 13491 -0.9 12 4 Tu 1 . - CDS 13555 - 15753 2374 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Term 15823 - 15854 -0.6 13 5 Op 1 . - CDS 15899 - 16279 679 ## PG0886 hypothetical protein 14 5 Op 2 . - CDS 16303 - 17400 889 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 17428 - 17487 4.1 + Prom 17895 - 17954 1.8 15 6 Op 1 36/0.000 + CDS 18032 - 18751 367 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 16 6 Op 2 10/0.000 + CDS 18767 - 20047 1478 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 17 6 Op 3 13/0.000 + CDS 20076 - 21335 1426 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 18 6 Op 4 13/0.000 + CDS 21381 - 22493 1630 ## COG0845 Membrane-fusion protein 19 6 Op 5 . + CDS 22519 - 23871 1784 ## COG1538 Outer membrane protein 20 7 Op 1 . + CDS 24044 - 24961 950 ## COG1131 ABC-type multidrug transport system, ATPase component 21 7 Op 2 . + CDS 24958 - 25833 836 ## gi|228469709|ref|ZP_04054677.1| putative membrane protein 22 7 Op 3 . + CDS 25853 - 26242 667 ## COG1725 Predicted transcriptional regulators + Term 26293 - 26339 8.5 + Prom 26519 - 26578 4.7 23 8 Op 1 22/0.000 + CDS 26646 - 27038 451 ## COG0720 6-pyruvoyl-tetrahydropterin synthase 24 8 Op 2 . + CDS 27040 - 27645 200 ## PROTEIN SUPPORTED gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 25 8 Op 3 . + CDS 27732 - 28223 275 ## PGN_1296 putative OmpA family protein 26 8 Op 4 . + CDS 27979 - 29658 1727 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 27 8 Op 5 11/0.000 + CDS 29679 - 30245 503 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 28 8 Op 6 . + CDS 30257 - 31402 1030 ## COG1088 dTDP-D-glucose 4,6-dehydratase 29 8 Op 7 . + CDS 31399 - 31956 583 ## Fjoh_4986 fumarylacetoacetate (FAA) hydrolase 30 8 Op 8 . + CDS 31993 - 32640 992 ## COG0036 Pentose-5-phosphate-3-epimerase 31 8 Op 9 . + CDS 32683 - 34203 1632 ## COG0658 Predicted membrane metal-binding protein + Prom 34210 - 34269 1.7 32 9 Op 1 . + CDS 34451 - 37258 2781 ## BVU_2506 putative outer membrane receptor protein 33 9 Op 2 . + CDS 37280 - 38590 1750 ## BF3067 putative lipoprotein 34 9 Op 3 . + CDS 38609 - 38884 161 ## gi|228469722|ref|ZP_04054690.1| conserved hypothetical protein 35 9 Op 4 . + CDS 38881 - 40197 1091 ## BVU_2507 putative lipoprotein 36 9 Op 5 . + CDS 40235 - 41815 1431 ## BVU_2508 hypothetical protein 37 9 Op 6 . + CDS 41856 - 44297 3015 ## gi|228469723|ref|ZP_04054691.1| hypothetical protein PORUE0001_1637 + Term 44304 - 44353 9.0 + Prom 44336 - 44395 2.5 38 10 Op 1 . + CDS 44419 - 45012 918 ## BT_3629 hypothetical protein 39 10 Op 2 . + CDS 45039 - 45620 728 ## BVU_2510 hypothetical protein 40 10 Op 3 . + CDS 45657 - 46541 233 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 41 10 Op 4 . + CDS 46552 - 47223 661 ## BT_3626 hypothetical protein 42 10 Op 5 . + CDS 47230 - 48264 1064 ## BT_3625 hypothetical protein + Term 48388 - 48429 -1.0 43 11 Tu 1 . - CDS 48363 - 48578 67 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 44 12 Op 1 . + CDS 48739 - 49176 784 ## PGN_1488 hypothetical protein 45 12 Op 2 . + CDS 49239 - 50429 1877 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 46 13 Tu 1 . + CDS 50573 - 51784 928 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 47 14 Tu 1 . - CDS 52019 - 52486 409 ## gi|228469701|ref|ZP_04054669.1| hypothetical protein PORUE0001_1646 - Prom 52511 - 52570 2.7 48 15 Op 1 . + CDS 52529 - 53278 996 ## gi|228469690|ref|ZP_04054658.1| hypothetical protein PORUE0001_1647 49 15 Op 2 . + CDS 53295 - 55328 2519 ## COG0556 Helicase subunit of the DNA excision repair complex + Term 55412 - 55450 2.2 - Term 55103 - 55147 7.2 50 16 Op 1 . - CDS 55333 - 55707 500 ## COG1539 Dihydroneopterin aldolase 51 16 Op 2 . - CDS 55733 - 56971 1480 ## COG1760 L-serine deaminase - Prom 57011 - 57070 2.0 - Term 57506 - 57550 13.1 52 17 Op 1 . - CDS 57580 - 58452 1145 ## COG1209 dTDP-glucose pyrophosphorylase 53 17 Op 2 . - CDS 58464 - 59462 901 ## PGN_0732 hypothetical protein - Prom 59487 - 59546 2.5 - Term 59496 - 59548 10.4 54 18 Op 1 . - CDS 59564 - 60241 187 ## PROTEIN SUPPORTED gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 55 18 Op 2 . - CDS 60304 - 61287 1275 ## COG0167 Dihydroorotate dehydrogenase - Prom 61418 - 61477 75.3 + TRNA 61401 - 61473 82.1 # Phe GAA 0 0 + Prom 61400 - 61459 76.0 56 19 Op 1 . + CDS 61622 - 61795 58 ## gi|228469706|ref|ZP_04054674.1| hypothetical protein PORUE0001_1656 57 19 Op 2 . + CDS 61869 - 62939 1245 ## ZPR_0199 endonuclease 58 19 Op 3 . + CDS 62984 - 63532 604 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 59 19 Op 4 . + CDS 63618 - 64064 443 ## gi|228469682|ref|ZP_04054650.1| hypothetical protein PORUE0001_1659 60 19 Op 5 . + CDS 64090 - 64563 600 ## gi|228469710|ref|ZP_04054678.1| hypothetical protein PORUE0001_1660 + Term 64801 - 64847 13.2 + TRNA 64700 - 64777 82.0 # Pro TGG 0 0 - Term 64779 - 64843 13.5 61 20 Tu 1 . - CDS 64870 - 65100 244 ## gi|228469689|ref|ZP_04054657.1| conserved hypothetical protein Predicted protein(s) >gi|228308695|gb|ACLR01000059.1| GENE 1 741 - 1655 1352 304 aa, chain + ## HITS:1 COG:CAC2708 KEGG:ns NR:ns ## COG: CAC2708 COG1250 # Protein_GI_number: 15895965 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Clostridium acetobutylicum # 18 297 2 281 282 269 48.0 5e-72 MTRETSTQSSTATTHYDKKVAIVGAGSMGRSIAICLAMHHIPTVIQARSLDRQKRAIPLL EQSLVECGELFGWSDAERQELLSRIKVTVDNADIVSANLVIEASSGSLEEHKELYRDLDA VLSEETIIASITSSISITELGNATQRPSLVAGMHFFNPVPLIDLVEIVSSQHTSQETLEQ IQELCDAMGKETVYVEDSPGYIVNRMLIPMINEAITELAQGIGSIEDIDRAMRIGASHPM GPLELADWIGLDTCLEILEGLFAEFMDSKYRPHPLLRRKVRAGQLGRKVGVGFYRYTPEE EEES >gi|228308695|gb|ACLR01000059.1| GENE 2 1689 - 2600 821 303 aa, chain + ## HITS:1 COG:MA3031 KEGG:ns NR:ns ## COG: MA3031 COG1234 # Protein_GI_number: 20091849 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Methanosarcina acetivorans str.C2A # 1 303 2 298 305 150 32.0 4e-36 MQVKILGCGSARPTRHHLPSAQVLTVAGHHYLIDAGEGVQHSLIMAGYKMTQLEALFISH AHGDHCFGLPGLLTSMAHVGRTKPLTIVTTAEVADFIRYIEAHHVEESSYALSVTIAPSD EVSPSIYTDEWITVDTLPLRHRTSAVGFLCREHCMPRRIDPVATNFYQIPYSAMPALQMG LDYVPQGGGRIIPNRELTKPGRPPRSYAYLSDTLPAWHLVEQIRGVNLLYHESTYSEEFL DRAETYGHSTARQAAEVAKAAEVGQLLLGHYSGRYDDVSVLLKEAQEVFPNSFAAQEGDL YEV >gi|228308695|gb|ACLR01000059.1| GENE 3 2634 - 4178 1950 514 aa, chain + ## HITS:1 COG:no KEGG:PGN_1481 NR:ns ## KEGG: PGN_1481 # Name: not_defined # Def: putative polysaccharide biosynthesis protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 8 512 1 494 494 429 47.0 1e-118 MSSRIKSLFKDTVIYGATTMLSRFLGWALFPLYVYQLPSPADYGIVTNLYAWVALLLILL TYGMETGFFRFSREGDGRKVYANSLRTLGTSSLLFLILGLLFVKPIGAALGYADMLRPVA MLIVIVAIDAFTSIPFAYLRYTNQALRYGLIKIGYVLLTVALNLFFLLVCPWLQRVAPGA VDWWYEPGLGVEYIFLSNMIANIILLLVLIPYMKEARGGGRFDWGLLRRMLHYSLPMVLL GIAGNFNKMADKIIFPLLFADQTFANTQLGIYSAGYKIAVVIVMFTQAFRFAYEPFIFQR GKEGELSADEEAAAERERRITYAKAMHYYLLSAIFIYVAVMCYLDLLKVLISPAYYDGLR VVPYVMLGEVLFGIYYNLSLWYKLTDRTYWGGIISTLGCLLTVAIIVWGAPHWGFMACAY ASVVSNLLLVLISYFLGRKYYPVPYRLGATAGYLAVGAIAVGLVLWIYGTMPAMWMRLLL STVVFVALTGYVAWREQLGKAFAPLLRRLRHKAS >gi|228308695|gb|ACLR01000059.1| GENE 4 4503 - 5414 1026 303 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469703|ref|ZP_04054671.1| ## NR: gi|228469703|ref|ZP_04054671.1| cold-shock DNA-binding domain protein [Porphyromonas uenonis 60-3] # 1 303 1 303 303 555 100.0 1e-156 MMNDFASWLTPGQSVLIVSKDRTFRGTFQAVCGDYIVLESRRGDQHFIREELIESFTVYH KRERSASSLRDSLEEEELSEERDVKKLSDEEAIESLLSPLEGSIDKDKTYIYKPGDRIPL PDKNQIKSHAVKQQKAGPNRYPRNSADKPTLSEILDEIEASEDRATIPEEDLQIVRPAGT IKMRENMKKYGFIEAFDEEKTNYWFPFNALTDEDLSVTDEVVFCKGSNEKGFTASGIASP GTIHRLLLLVDYILKTRYYNFPIVLPLLETMREQYPDNKSIEDKYQEVKERQESYSKRKG GAE >gi|228308695|gb|ACLR01000059.1| GENE 5 5441 - 6493 1239 350 aa, chain + ## HITS:1 COG:no KEGG:PG2066 NR:ns ## KEGG: PG2066 # Name: not_defined # Def: putative lipoprotein # Organism: P.gingivalis # Pathway: not_defined # 2 345 6 348 351 299 44.0 1e-79 MRPLYQIASLLVALLAVCSCSDGGGNTFTQASGKPNEVMLVMDRDYLADSVGTAVKAMLR SYVPAMPQIEEQMDVTTVDPKDFDTFLRYVRNILIVDIDAGRYTQNSVKFAYDQWAHGQI VVTIQSPSPDSVCYLMADRGRAVLNLFVRHELAVQASNLVKNFSHKADELAVKHLGYHIN APEDIVSYKVGKNCLWLSNNAMRRRTDMLLYKVPYHGEALTAPYLVALRDSVLAVNVPGP VEGSHAVTAPHILMTRQVSIEGQPLRTELRGLWELRGGGSMGGPFVQHAFVTPQGNELVV AEAFVYHPNEAKRDVMQQVEAALFSVRADSVELWDAEQVAQARWTAYTTY >gi|228308695|gb|ACLR01000059.1| GENE 6 6501 - 7574 624 357 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 6 334 7 330 346 244 39 7e-64 MTDRRIVVGITHGDINGTSYELLLKLFNRNGVTDLFTPIIYGSPRIAAYYSKALQMERAS WHLITDAEEAEPDVVNVIDVVGDEIDVTPGKVTEPAGLAALAALERATSDINRGAIDVLV TCPINKSAMPQDRFPYKGHTAYLGVACGQGKEPLMILAAPSGLRVALVSTHDPISQVPKV ITQRRVLKTLEILDEALRRDFLISSPRIAVLGLNPHAGDNGLIGSEELEVIAPSIAIAQR EMGIYAFGPFSTDGFWGSGAYQQYDAVLAMYHDQGLAPFKLLHLHDGVNVTAGLPIIRTS PDHGTGYDIVMQGIANEQALMESIYMAIDLYRHRMADDEARSNVLPKLYKNKRGDNE >gi|228308695|gb|ACLR01000059.1| GENE 7 7596 - 8561 825 321 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469680|ref|ZP_04054648.1| ## NR: gi|228469680|ref|ZP_04054648.1| hypothetical protein PORUE0001_1607 [Porphyromonas uenonis 60-3] # 1 321 8 328 328 567 100.0 1e-160 MERINGLIARKGIRPMTDRIAREVLVRTDFAEAHYMSMLAMLMGVVAAFTLLDPISLWSS IVGTVVILLALILNETAYSVERQRVTRQTVPALSKQVVVWFTATPIVIQLALLVSLPIRI STYPPEEAGATGISDWWYVAPALIVILLYLYQLLIEYFVRYSQRSMSAQLEAHHYAPLFA YRYQRGYQATSPKEPEGKWSRRALYRLLTLWEVLLPWHYRLQSLLYRHAHQEGVPAQFVQ QMPQYKRGVDVTLGLLSNYNRWVLLVLTLAFRWELWYLVVTGVVLSLITLGVHLYLESEY RKLYQGLSDNIQRKEQPESPQ >gi|228308695|gb|ACLR01000059.1| GENE 8 8566 - 11874 3391 1102 aa, chain + ## HITS:1 COG:HP1553 KEGG:ns NR:ns ## COG: HP1553 COG1074 # Protein_GI_number: 15646160 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Helicobacter pylori 26695 # 12 820 11 723 945 115 26.0 4e-25 MSTSNKRLHIYKASAGAGKTHTMTEAFLRHVLQYPESSYQEVQAVTFTNLATRELKERFF KELSTLAVAPQESPFYGTFNKHYSDKQLSTRARTALQSILFDYDGLRVKTIDSFFQDIIH ALAIELKQRPTTRIELSTDQILGLAVERLFDEPSPEAQEAIKRFLTDQADKSIYALKNSL TLFAKQLYNEQIQELAFKNKQLLNPKTYPLFLKAVKAQIDIVREEIRNQVDAFRAQVIPG TKFPGGQQSPLARLTDTTKDQPTIGATKSYITATTWDKYLRHFNVEEALDERYTKGFEGS PLLSAFYKILPLHTKLFTLQTAIRKGYDLQLLGEIQSNVSKVSEELNITLLDNAKQLIRT LVGREHSTAFIYERIGTKLKHHMIDEFQDTSRFQYENFKPLLNEALAADGSSFIVGDVKQ SIYRFRNSDPMLLQESLSKDFSNYEKTHNLEFNWRSAPAIVSFNNRFFSLLPGASQLKLD KSSESYKLIENIYAASEVHQEVPDKHLNKVGGVFIHQWQEASPQDQLQAKIDYLLEHVIP SLRERGYKLSDIAILTPKNDTLQRIAQSIIQYNQEHKSEQEPLAFVSREMLSLDANPLYR LIVEIMHSVLVNAGAAEELYSKSFEHRLATAHYAVLARSIHDLPALDLTRCYSEGQGASL YELTLLIVKAVSPLITSADQPYIDALLDTVQDYSQDNYVDLQGFLEWLETHTPRLCLETQ DALQLLTIHSAKGLGFPVVCLLEYQWRLLDHNDIIWCDDKEVMDELRELLGTDVEIPPLL PISSTKETLSTSFRHRIAAEEGAALLDRINTLYVAMTRAKSEMHLILSEKKETSGKSVNF ESVISELVKEIHKTASSADFCGSKEIPLHCSKATTSSAKVGEVLQCTFYTQTDPSTAPQT QPTAESSTASAPRRISGREQTSDLAQLRVRRFQSVSYQEQDAVRRGLFLHALLSEIDYLE HDELQDILQAKCHQGLLPKEQLAPLTKQLEGALADPAIAEYYQPSSKWQVVNERSVVRFT QDTSSETRTARIERPDRIMYDEEAQQAVIIDYKSGDEAQHQTARHKRQLRNYRKALLASG FTTVRAYLLYLSDDGHLVVEVD >gi|228308695|gb|ACLR01000059.1| GENE 9 11988 - 12335 599 115 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228469684|ref|ZP_04054652.1| ribosomal protein S6 [Porphyromonas uenonis 60-3] # 1 115 1 115 115 235 100 5e-61 MNHYETVFILTPVLSDAQMKEAVDKFTSHLTSAGATIVNDEHWGLKKLAYPIEKKSTGFY HFIEFDAEPSVIKPFETLMRRDETVLRYITIAQDKFHHAYAEKRRALKSNPVAEK >gi|228308695|gb|ACLR01000059.1| GENE 10 12339 - 12605 454 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228469704|ref|ZP_04054672.1| ribosomal protein S18 [Porphyromonas uenonis 60-3] # 1 88 1 88 88 179 100 3e-44 MARTRRGRYSRPLPGEVQQKKYCRFKKARIKFVDYKDPEFLKKFLNDQGKILPRRITGNS LKFQRRVAQAVKRARHLALLPFVTDLMK >gi|228308695|gb|ACLR01000059.1| GENE 11 12631 - 13197 923 188 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228469696|ref|ZP_04054664.1| ribosomal protein L9 [Porphyromonas uenonis 60-3] # 1 188 1 188 188 360 100 1e-98 MEVILKEDIINLGFKDDIVTVKDGYGRNYLIPQKKAIIASESAKKMLAEELRQRAHKLEA IKQEAQALGQKIDGMHLEIKAKTSKYGVIFGSVTNIQLAEALAEKGFEIDRKIIQIKKAV KEVGDYDAQVRLHREVIVPITFTVISENHAVIESETPAPAPAPAPEAAAEAQTEAPEAQA EETAEAAE >gi|228308695|gb|ACLR01000059.1| GENE 12 13555 - 15753 2374 732 aa, chain - ## HITS:1 COG:FN1482 KEGG:ns NR:ns ## COG: FN1482 COG0317 # Protein_GI_number: 19704814 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Fusobacterium nucleatum # 125 648 114 636 725 291 34.0 3e-78 MPTHHRDDHELMRYLLRTADQLGVASYVTPYRELLERLIREGQYGANEEEDDRETFMEQA EMAQLLCDEIGLGVVSISAVLLEPPYIRGAITAQEVEALCPPGTLPLIERLAQTHELYHR YDLRQADQGEEFLLTIAEDIRVVLILLVECLNKLIYAKERMDESRRVLLAQVAQVLFVPT AHRLGLYKIKSQMEDLIFKYTDPKHYYEIKELMGQTIVARQAYMDAFVAPIQKRLEELPL RWPYTIKSRSKTFTSIMNKMRNKGVAFDEIHDLSAMRIIIDAPPEEEYEACWLVYSIVTD LYTPNTKRLRDWISQPKANGYESLQITVQGPEGKSVEIQIRTTRMDRIAESGMAAHWRYK GVSGEASLDSQLTSMRQVIEDLAGDKEKANAQLSLRVESRDIFVFTPTGQMIRLPKGATV LDFAFAIHSNVGLMAQSAQVNGKRAKLRDKLKNGDVVNITTAKNQRPSIDWLQSVTTRKA KNKIRQAIRDQQESGLQAGKELLERRFKNRHLVYQESIFTSLLRKMGYKGNMDFFIDLSE ERVNVPNFLDQYAALSAEAEARAAESRRVASTPTAIKSPEASDGREIVVSTADFKGLEYT LANCCNPKMGDEIFAYPSKSGLKIHTRSCPNAIDILGRHGDRVLPARWRGMESSAVVATL YVTALHDAVTIGRVISTLHQADECSLINEEQQLDGGLWHGTFTFREGERQTLFALQAQLQ SIKGVQQVRLQQ >gi|228308695|gb|ACLR01000059.1| GENE 13 15899 - 16279 679 126 aa, chain - ## HITS:1 COG:no KEGG:PG0886 NR:ns ## KEGG: PG0886 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 6 123 8 125 254 96 40.0 2e-19 MKNKAIISIGSNEHRTANVKEVMEILTKHFPTIRFSTPQLTEPVDMPEDAKAFLNLIALF ETDLDRETLEAELKKLETKLGRDHDDDEEGIIPMDLDIIEWNDEVYKPQDMVRPYVVAGL DELDEL >gi|228308695|gb|ACLR01000059.1| GENE 14 16303 - 17400 889 365 aa, chain - ## HITS:1 COG:Ta0247 KEGG:ns NR:ns ## COG: Ta0247 COG2876 # Protein_GI_number: 16081390 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Thermoplasma acidophilum # 18 260 45 272 285 130 32.0 6e-30 MDDSSAHSTLEEPPASQMLVAGPCSAESREQLLEVAQGLKAQGVTHFRAALWKPRTRPGS FEGVGVEGLAWLQEVQASTGLKVGTEVCLPEQVEAVRTAGVDFVWIGARTVSNPFMVEAI AEQLEGATQTVLVKNPISPDAPLWMGAIERIKSRGVAEVMAILRGCTPVYTKQLRNSPHW EMIAQLRALYHKRYGAEEHLPILLDPSHIAGRADLLEAVCRTGMLYPIDGFMIECHCDPE HAWTDARQQITPEQLHQLLKSLQHPSSDHEAMLRPMRYQLRDLDAALVELLAERCKLTQT IGRYKTANHLGLYQADQRAAVEAHYIELATQYGLDPHWAAQLYNLIHDYSLRGQEAVDTK DANNF >gi|228308695|gb|ACLR01000059.1| GENE 15 18032 - 18751 367 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 6 238 1 227 245 145 38 4e-34 MNAKPVISLRNLHKTYQGAQPLHVLKGINLDIFPGEMVAIMGASGSGKSTLLNILGLLDS YDEGSYHLGEELLSNSLSENRAAEIRSRQIGFVFQSFNLIPFKNALDNIALPLFYQGVGR KERTKRAAELLARMGLSDWAEHLPSEMSGGQKQRIAIARALITTPSVILADEPTGALDSK TTIEVMELLREINRESHLTMIIVTHEPGVAEMCDRTIHIKDGLIEGGGLTSSLPEEVFG >gi|228308695|gb|ACLR01000059.1| GENE 16 18767 - 20047 1478 426 aa, chain + ## HITS:1 COG:VC1566 KEGG:ns NR:ns ## COG: VC1566 COG0577 # Protein_GI_number: 15641574 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Vibrio cholerae # 18 424 15 400 404 111 26.0 3e-24 MRIGHEYFSEIIDNLKRNRLRTFLTGFAVAWGIIFLVILLSIGVGLNRGISKSANAGDTE PNYGIYFEVWMTNLPYQGYPAGRWLYFDESQLAQLQEMVPAIEDIAPRLRSWNKISYASQ VVEGAVKGIGANYFGHFETRVKMLAGRGINGNDVYNREKTLLISSSDALKLFGTDRYSEA VGKSVSVDNVSFTVVGVYEASQNQSASYMPSSTFTMIHPNDQRIDGGYIYAPTIRSRKDF EAFNKELLKALSSILSFSPDDDQAMWGYSNYVNNEQYNKVVNYFYLFLWIVGLSTLLIGI VGVSNIMLVTVRERYKEIGIRKALGAKPRDILAMIMVESLFITAVAGAIGLVIAVGFVAL GDYLVTAYHIGEMSIMGETIHLFDTPVLSPQMALGILVVMIIAGIVAGYTPARRAIRISA IEAMRD >gi|228308695|gb|ACLR01000059.1| GENE 17 20076 - 21335 1426 419 aa, chain + ## HITS:1 COG:MJ1507 KEGG:ns NR:ns ## COG: MJ1507 COG0577 # Protein_GI_number: 15669701 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Methanococcus jannaschii # 7 419 9 399 399 129 26.0 1e-29 MRLFDRDIWGEAFHSLRTNRKRSIATAFGIFWGILMLVILMSLSQGFSNGMRKQLGGISS NTTMLYCSTTSKPYKGFPTDRWWSLSVSDIANLQKRFPEIETIASIQQGSWNTPVSYGTK STTAPLYSAWTSYDQIVYSTILAGRRLNESDEQQRRRNCTIGEEVSQKLFASHEEALGKV INIDGSYYTVVGVLKGKSKGMNINGSEEQKVRIPYTILSASLGQSNEVYHFLYSLHGDGK DSKAINDRIKAYIRSTHDIAPDDESAIGEFNISEFFTAQNSMMWGVNVFVWFIGIGTLLS GIIGISNIMLVSVKERTREIGIRRALGAQRKDIIRLILLESGMLSLLAGLVGLLLGVGIM SIVAQITASMESEMLVNPLIPFGTAIGALLFIIIGGVVGGLLPLKKALEIRSIEAIREE >gi|228308695|gb|ACLR01000059.1| GENE 18 21381 - 22493 1630 370 aa, chain + ## HITS:1 COG:NMA0728 KEGG:ns NR:ns ## COG: NMA0728 COG0845 # Protein_GI_number: 15793704 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Neisseria meningitidis Z2491 # 27 370 24 375 392 109 28.0 9e-24 MKAKRIFKLSLWVIFGLLVVMTFVFLYKKAQPQATIYSVETVTRVPSIQRSIILTGKIAP RNEVMIVPQLNGIIAEIMKKPGDLVKAGDIIARIKVVPEMGSVNQAESQVEIAKIALDEA QQKYKIATELHQQGIVAEEEYATTKANYLQAKERLASAKDAYNIVLTGMSQRNAQGSTTL VRSTVDGTILDIPVKEGNSVIQANSFNAGTTIATIADMTEMIFIGKVDEVDIARVATGLP VTVRIGAIEGSAFSGVVEYISPKTIQQQQGTQYELKAAITIDDYSRIRSDMSANAELITD QVSNVLAIPEGALQFEGDKVYVEVVTSDADPKHLQTERREIKTGISNGSLIEVKSGLKEG EKVKGTPIAA >gi|228308695|gb|ACLR01000059.1| GENE 19 22519 - 23871 1784 450 aa, chain + ## HITS:1 COG:alr2887_2 KEGG:ns NR:ns ## COG: alr2887_2 COG1538 # Protein_GI_number: 17230379 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Nostoc sp. PCC 7120 # 19 432 20 423 443 86 25.0 8e-17 MLTLRHIFPLALLVAGSFTLAAQQSWTLQQCIDHAVAHSITVEEARLRLAGSEQQLSTAQ HSYLPSLSASASQSVSLGRSADKTGVIGDQSSSSTSFGANLSWDVFSGMARPKATEIARL NLDAATAGLSYAKEQIGLQVAEGYYNLLFRQELIHVADEQLKLTRETLTKTAALVRAGKW SRDKLAEVEAQLAKDSVNYLRACSDTELARHQLALIIELPDYTALQITLPDVKSLSATPA PELALANDALLEQARTMRPEMEQARLQLQVAEQQIGLEQTGYIPKVSFGAGYNTGYYYIL NEKLRQFNQPFGDQMRNNGRYFIGLSLSVPIFDAMRTADNVAQARLRYSDQQIALRKVDK ELTQQLYTAQINARAAYSQIDAAQRATESAETALHYAQISYEAGRASSYELAEAQNRHFV AQSEELRARYDYLYRVLVLHSYISPAEETK >gi|228308695|gb|ACLR01000059.1| GENE 20 24044 - 24961 950 305 aa, chain + ## HITS:1 COG:BB0573 KEGG:ns NR:ns ## COG: BB0573 COG1131 # Protein_GI_number: 15594918 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Borrelia burgdorferi # 15 230 5 218 270 137 35.0 3e-32 MYSNTDTHLTAEPLVQAQEVCFSYGRHPLFKGVSFTLPAGSITGLLGKNGEGKTTLLKLI SGLLLAKGGSLTVLGHSSRKRSVPLLRELYYLPEEVQLPATSAVQYLDGAGQFYPNYDAT LARQLLKDFDVPPTNNLRRLSMGQKKKVALVLALSLRVPLLLLDEPTNGLDIPSKSKFRQ LLVQHISDEQTVLISTHQVRDLEQMIDRLVVLHQNQIICNETIARLESTFYCGTAAEAPH VAPLYSEPSVWGEVVMTPRTPETAETGGFSMELFFNALMYNTQAVLQHLSQPVNDTLTPQ APLSL >gi|228308695|gb|ACLR01000059.1| GENE 21 24958 - 25833 836 291 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469709|ref|ZP_04054677.1| ## NR: gi|228469709|ref|ZP_04054677.1| putative membrane protein [Porphyromonas uenonis 60-3] # 1 291 1 291 291 521 100.0 1e-146 MNQSANLTTAAPKTGDSSFSFKRLGQLLRLDFAFHHRQWIQILIGGFLAASIPVVVSVLT TLLFGMGGSDFSARSVYFACLYCSLLAVSLGVMISYNQRVNAPLSPLYLQIPASATEKYV SLLLLTLALHIITPLLGAIAWTVYMLIWALMDGSQVLALYPDILTDPLCYYGVSPQYGWN VSLMIGMQLAGYATYLYCVISARKPLRAVLRFLGIGFGIFVVSMLGMSMMMHLLDIGSIS PDETNRYLVFYLDNGDELSISLLAMTIPFYLYAFAMVWLGLHSLRRKQVKA >gi|228308695|gb|ACLR01000059.1| GENE 22 25853 - 26242 667 129 aa, chain + ## HITS:1 COG:lin1836 KEGG:ns NR:ns ## COG: lin1836 COG1725 # Protein_GI_number: 16800903 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 2 98 1 99 122 67 34.0 4e-12 MITPHFNPQVVIYAQIEQRIKEKILSGEYPAGTQIPSVRQLAAELETNANTIFRAYENLQ NEGLIYPKKGLGLYVSETAEMLLRDEAYRVLTEEELPELFAQLKVLNMNILEVVRRHTDW VKQQGDPDA >gi|228308695|gb|ACLR01000059.1| GENE 23 26646 - 27038 451 130 aa, chain + ## HITS:1 COG:RP178 KEGG:ns NR:ns ## COG: RP178 COG0720 # Protein_GI_number: 15604053 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Rickettsia prowazekii # 2 122 13 134 138 91 34.0 3e-19 MGHRVVGHESKCRHLHGHNYRIHFTCSAAQLDELGRVIDFGVIKELLCMWLEEHWDHKMM IYDEDPLLPSLRELVPEDLVVVPFNPTAEAMAHYLVETIAPAQLAGTGVTLVSCRVEETA RCSATYSLPI >gi|228308695|gb|ACLR01000059.1| GENE 24 27040 - 27645 200 201 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] # 4 199 18 223 225 81 31 1e-14 MQSLPVNEIFYSLQGEGGQMGRAMLFVRLSGCNLACDYCDTDFAGHRLMTVAEILAKLES YPCRDILWTGGEPTLALREEHIAFFHEQGYRQSIETNGTRPVPRGLDYVTCSPKAEAISG LRERFVDNYPDGIDEVRWPLQLGAPLPPPIEQLVQARRYYVSPVEETGVEMSAVVARCMD FVLAHPEWRLSVQLHKLLGFR >gi|228308695|gb|ACLR01000059.1| GENE 25 27732 - 28223 275 163 aa, chain + ## HITS:1 COG:no KEGG:PGN_1296 NR:ns ## KEGG: PGN_1296 # Name: not_defined # Def: putative OmpA family protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 105 23 122 672 89 48.0 5e-17 MGCKSVTLSKAELYDHTGRYALAADSYYTLYRRTSRKKPERRAYLAFKAAENYRRLGNTP RALNCYNLALSGNYPDSILHLRIAQELQQLGRWREAGKSLQAVFRVLPTRLLRTHRTGEC ASGRFAPCPPHGTHGRDGSSLDLALCGVCPLLCARRHDTLLHQ >gi|228308695|gb|ACLR01000059.1| GENE 26 27979 - 29658 1727 559 aa, chain + ## HITS:1 COG:ECs1041 KEGG:ns NR:ns ## COG: ECs1041 COG2885 # Protein_GI_number: 15830295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Escherichia coli O157:H7 # 427 510 220 305 346 76 47.0 1e-13 MLRSYNSWVAGGRRAKAYKQFLEYYPHDYFGRIGLASVRQADSLLAHPTGHTVETDRLLI SPYAEFAPCYAPDGTILYFTSSRVPLRDMLQESEVTGLGTNNLFMIKQDAAGKWSRPDSV PGSVNTPEDEGTPSISSDGNTLYYSYAEQSSTYDRTVQIYKASKSSQGGWGKGERVPIWE DSLRMAAHPAIDASGRYLYFVSEGAGLGGKDLYRIALSEHGWGKPEHLGNEINTPGDELF PTMVGDSTLYFSSDGRVGLGGLDLYKAQMDSLGGWQVTHLGAPMNSPADDYALTFSPKPQ SGLAEEGYLSSTRGDQRGRPHLYHFSLPATIIRIDGFVMDREGYGIPQATVRIADEQGLL ATPIVSTRDDGSFVLEIAGSNRYVLHASHPDYLNQYMPLVTDSATESTDYLVDFYLASRL HSEQIHDIYYDFDRASLRLEGKKSLDYLVTLLEQNPDVRLELSSNTDRKGSQRYNKRLSQ RRAQSVVNYLIAKGIAADRLEARGYGKERPYVVTKGMATRFDWLPEGQELTAEWVGALTE EQQVVCDQLNRRTEFTVIQ >gi|228308695|gb|ACLR01000059.1| GENE 27 29679 - 30245 503 188 aa, chain + ## HITS:1 COG:CAC2331 KEGG:ns NR:ns ## COG: CAC2331 COG1898 # Protein_GI_number: 15895598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Clostridium acetobutylicum # 9 182 10 180 185 164 48.0 9e-41 MIHYQADPDLAGVYLIEPDCYGDARGYFAETYRTADFAATVAPRPWVQENESSSVRGVLR GLHLQRGEASQAKLVRCVVGEIIDLIVDLRRDSDTYGQWRSYHLSEQNHRQLYIPREFAH GFLVLSEQAKFLYKVDNGYAPESELCIRYDDPQLAIPWESWGISSEELILSDKDLRGISL ADYTASRF >gi|228308695|gb|ACLR01000059.1| GENE 28 30257 - 31402 1030 381 aa, chain + ## HITS:1 COG:CAC2332 KEGG:ns NR:ns ## COG: CAC2332 COG1088 # Protein_GI_number: 15895599 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Clostridium acetobutylicum # 7 381 3 351 351 401 50.0 1e-111 MTSYRHTYAVTGAAGFIGTNLAYYLSEALAPDERIVLIDKLTYAGNYRSIEPLIDNERIV FVQADICDAEAMDALFTRYAPHYLINLAAESHVDRSIEDPAIFVRTNILGVQTLLDTIRN HWSTTSGRGSYPVWQEGRMMLQVSTDEVYGSLGREGFFVESTPLDPRSPYSAAKASADLL CQAAVHTHHAPVVWTRCSNNYGPYQFPEKLIPLVIRQCLLGKEIPIYGTGENVRDWLYVT DHCRALHLVVTQGKAGTAYNIGGHNEHTNLEIVRIIISQLHDRLSKEPARAERISEILGA QVQPELINEELITFVRDRLGHDARYGIDPTFIHQELGWLPSVPFAEGIGYTIDWYLDHFD WVKSITDEDYQHYYQQMYSGR >gi|228308695|gb|ACLR01000059.1| GENE 29 31399 - 31956 583 185 aa, chain + ## HITS:1 COG:no KEGG:Fjoh_4986 NR:ns ## KEGG: Fjoh_4986 # Name: not_defined # Def: fumarylacetoacetate (FAA) hydrolase # Organism: F.johnsoniae # Pathway: not_defined # 8 177 23 199 203 80 30.0 3e-14 MKVYGIDDESRLFYKGEALLRPGYPFFVPHLEAEWCAIPSLAIKIGRTGKCVAPPFAERY IESCAAGWDITCRSLLAELREAGAPWERAKVYDGSAVALDWQPLDTALAEHYTLTLSEQS WTLSREAVCQALSLLSECLTIHTGDVLLLNTIPITAAPAIAPEQQLSLTLQAGERLRSTT LLRIK >gi|228308695|gb|ACLR01000059.1| GENE 30 31993 - 32640 992 215 aa, chain + ## HITS:1 COG:alr0782 KEGG:ns NR:ns ## COG: alr0782 COG0036 # Protein_GI_number: 17228277 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Nostoc sp. PCC 7120 # 3 212 11 222 235 226 52.0 3e-59 MAIVSPSLLSADFLHLADEITMINESQCDWLHIDVMDGVFVPNLSFGFPIIEAIRPICQK PLDVHLMIVEPWKFIDQFAKLGIHIMNVHYEVCPHLHRTLRAIREAGMRPAVTLNPHTPV ELLTDILCEADMVLLMSVNPGYGGQKFIEHSVRKVERLRKMIQEQGLSTLIQVDGGVNLE TGRQLVEAGADSLVAGSAVFKAPSPQEMIAQLHAL >gi|228308695|gb|ACLR01000059.1| GENE 31 32683 - 34203 1632 506 aa, chain + ## HITS:1 COG:FN0223 KEGG:ns NR:ns ## COG: FN0223 COG0658 # Protein_GI_number: 19703568 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Fusobacterium nucleatum # 225 451 113 328 378 84 26.0 7e-16 MRPALVTLLSLVLGIYLGSLGLLAAQWYLLGIAVATLLLVLSRLWHKALLAGSAWYLVLL CMGACLATIPRERVAQLPQPSEETTYLVTISRPPTAREQGSRAEAIIEQATDPSGATLVR WRGQRIMLYLYNDSLQLTPRTNYLVRGRLTPLDQVSSSSYQHYLLSRKASGVLSASTAEA CNALSTTHWSLCDQLRYRAYTLQQRIGGTLDEIDRLTPLQRETLRAICLGDRYEGTVAEA QFRSVGVAHLLSVSGFHVGVVLLLIYWLIRYPLRLIHNVRTAYLLRWSLTLVAVWLYAFV CGLSIPTLRASLMFSIFVVARLLGRSTDRLNVWAQAAVLLLIVSPYALFDVGMQLSFGAV LAIFVTWGALNQRITPSSSRIVSYLYYLIVTTLAVQLFVWPILARSFGSTAVWLLLANLL LSPLATLLIITGLVTMGLLALGLPTTLLPMLLVGVSDLTSGAMALLEQHFTAQLTIAMPL WLCVAYYLLLYAWVQYLLARPRPVRI >gi|228308695|gb|ACLR01000059.1| GENE 32 34451 - 37258 2781 935 aa, chain + ## HITS:1 COG:no KEGG:BVU_2506 NR:ns ## KEGG: BVU_2506 # Name: not_defined # Def: putative outer membrane receptor protein # Organism: B.vulgatus # Pathway: not_defined # 21 933 19 909 911 587 37.0 1e-166 MKKSIVRLLLLCLLLPILSQMLYGQGARHALTGVVCDATSGEPIAYALVALSAEGHKDVV TYTDDDGRFAFQSVLAGRYRLQVRYAGLRKEQTITLQRDQYLRIPFKLEQVLGEVVVTAQ EGRHLTSSSTIERAAIDHLQPSSFSDLTALLPGGKSSIPNMGGVNNLLLRETGTINVQGN KTNNQDYAISSLGTLFMVDGAPLNTDADMQYTASSSGSLLGAGKVNVNRGVDMRTLQTDN IERVEFIRGIPSVEYGNITSGVVLVHRKRQASPVQSRFKVDGYSKLVSVEKGFALTPSQH HILNGDVSYLDAKPDPRVPFETYRRLTGSLRYHGTSSDQAHRWEVSGDYTGSFDKNKIDP DLSYGRTDEYLSDYNRIALTSRYSYTPTERTGGLQRVELTLSAAQQFDYLHQRRLVAPDR MTITPTGVEAGEHPATLIGREYVADYVSDGKPLTLFAKGQTLYNIEWGKASHRLKGGFNY ELSKNFGRGQVYDLSYPLFPKAWDTRPRPYYQIPALQQLALYAEDLYTQPLGAHTLQLEA GVRLSMLLGLAPQYTLSYKPYLDPRVNLRWSLPAWELWSRDLKLSLDAGWGLTTRMPTLN YLYPDPRYVDITQLAYYDINAPYERSLYYVRTYIEDATNYKLRATRNQKLDLRLSAEWGR NRISVSYFNELMTTGFRYRSTAQVYAYNKYDASAIDYSKLTGQPDINTIPYTPAARIEST SRPENGSMIRKEGVELQIMTERIPVINTSLILGGAWFRSTYSNSVPLYYAVSGVYGNVIL SDQYLGLYNWQDGSENQSLSTNLLFDTQIPQWGLILTTAVESTWLVSRRRLPQDGRPIAY LDVHDGKLHPYTDESERDTYLQHLFIRYSDTLFKPSRIPLALGVNLKVSKQLGKLFTLSL FANNVIDYLPDYKVGTATLRRTATPYFGMELRIKI >gi|228308695|gb|ACLR01000059.1| GENE 33 37280 - 38590 1750 436 aa, chain + ## HITS:1 COG:no KEGG:BF3067 NR:ns ## KEGG: BF3067 # Name: not_defined # Def: putative lipoprotein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 2 411 5 404 404 272 39.0 2e-71 MKRLLYILLLPALLVAVTSCRPDPVTPDNPKEQKSITCLFERTLPEDVTDLTIQEELLTL HNITTGQDVEHKTLEEVKLAPGLYNLNYTANCRYKLKGVSMEGRLVAQIENLEVTDQTTD PLKLRLELRIVPTVQDFVIQEIFFTGTQTTAGRPYVGTSYVILYNGTDKVLYADGIAFCE SEFNPAIKQDYKPDLRQTDFVPHAVYVVPGSGKEHPVKPGERLILCDIGIDHKATNPNAF DLSKANFEWYDESSVPTHQDFDSPTVPNLDKWYCYTRTFFILNNRGLVSYVIARMPVTKE AWLKDYVYDYSYVFVGTGNEAKRSSYRIPLDWVIDGVNCSVEAMHKWTILPERIDAGYTH CGKVDRDPNRFFHSVRRKYLGKDAEGRMILQDTNNSTEDFNPMVTASLIEEQGSAIDAKG TPCTTKTYDGVVPIDK >gi|228308695|gb|ACLR01000059.1| GENE 34 38609 - 38884 161 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469722|ref|ZP_04054690.1| ## NR: gi|228469722|ref|ZP_04054690.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 26 70 367 411 526 68 66.0 9e-11 MVHHPSVCLSRSLALLLCLLGVLTSSLYGQPLDFGAKGFWDSQGTLRAPWLWGTAFAMGS RLHQEDLLPHLTVAWSYTSRYNLSHTPTSSL >gi|228308695|gb|ACLR01000059.1| GENE 35 38881 - 40197 1091 438 aa, chain + ## HITS:1 COG:no KEGG:BVU_2507 NR:ns ## KEGG: BVU_2507 # Name: not_defined # Def: putative lipoprotein # Organism: B.vulgatus # Pathway: not_defined # 7 409 10 401 404 268 38.0 3e-70 MNRIFRLLLIISAVIAVSSCRPEHGRAPLPTVSCAFTTQLPDGLTDLSVLGEEVHLTNKA TGVDTRYTSLDSIAVTVGLYDISYTVECTFTLHGIQMRGRLVSRLADVSITEQEGDRAVQ LLLPLRVVPQVDDFVIQEIFFTGTLTPAGKQYHGDNYVVLYNGTDHVLYADGIAFCESRF VSTRKYDYKPDIRHEAMAVQAVYVVPGNGKDVAVPPGGRLILCDTGIDHKTNNPNSFDLS KANFEWYDVSTVPAHQDFDSPLVPNLDKWFCYTKSFFVLHNRGFRSYVIARVPIDIDKES YLKDYVYKFTWVLTHAGVSYDMSGSCYKIPNDWILDGVNCSVEANIQWTILPETIDAGYT NCGKADHQKDRYFHSVRRKFLGLDALGNPILQDTNNSTEDFNPMVTPALVEEQGSAIDAK GTPCTTKTYDGVTPMVAK >gi|228308695|gb|ACLR01000059.1| GENE 36 40235 - 41815 1431 526 aa, chain + ## HITS:1 COG:no KEGG:BVU_2508 NR:ns ## KEGG: BVU_2508 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 65 526 56 516 516 160 28.0 2e-37 MVIHFSPLALAWTLLSLFIGNLYGQQVETQAIPADSADTSTTLRTLLEQRRPGYDCSVSP AVSPLYFFSERGSRTDISLGGAVRRDGGETMVPQLGKQDIDGSVHIESALRQRNNFAWGA ASYTYRATEGIRFNETTDYQLLAPYVMGDTAYTARLHQDLYTFGAGTVHRLGNWLLSLKA DYRATFAYRTQDPRPRNLATLLEGQLGVGYQFADYALALAGTLGRYKQNNQVDFLSEVGV ASEYHFTGVGGDYYRFRGNNTSLFYQGISYGLSLGVTPTGQARQGFYALAAWHLLTTDRI IRELNNLPLSTLHLHTLDLQAGYTARSARLGRWGVALYTQGDIRRGTVHLFGDPKGNLYP RIATERSYYGQTLEFGAKGFWDSQDTPRTPWSWGISTSLGYRLHEEDLLPQAERLFYHLG GTLAPYVSFHRGQYFVSLTPTYSIWAQTGHPSLQLASQHQPIPTYAETLERAFQIVSSTQ MTYGLSMTHGYQLSSRYALWLSLDYLHTQTKLCGSDYGAIRCGISF >gi|228308695|gb|ACLR01000059.1| GENE 37 41856 - 44297 3015 813 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469723|ref|ZP_04054691.1| ## NR: gi|228469723|ref|ZP_04054691.1| hypothetical protein PORUE0001_1637 [Porphyromonas uenonis 60-3] # 1 813 1 813 813 1586 100.0 0 MRKQLPVLLMLLTLFCTASVTIAQTPTEGVAKNFLWYRLVANSVERIQVPQQVVASMDGN LFASNMFYSKERADSSSVFNYDAPNVADKAVSFGDDGEAANGNVAISIYKMTPEGKLLWH IYNSRGDVHSNVHCITATPDGGFVTILMVRDAKSKSKTDVDILRLVQADGKPYNIEMKSR FVGANEDASAGATHRKVMPILVKVSATGQIEYHKAFEVDHKPMPDATYYSYGTPTGCDFK GTTIDPEGNVYVCGFVRTAITIGETTIKAKNNVGWNGDSQKDMGDFFILKFDNKGNLVKT LTEQGAPIGRSMLCVIKYQDGKLYATGRFTGTKEKTPITIDGKQLIPSDKESLVTLCLDT DLKVSWISQIDVKAVPDHGWTKVFVDGVAVGKDKVYIAGRCAGALVDAEGNVILEQKLKQ HRGYALALDKATGKPNAKWHTLLPEKGISNCTAISTQGDRVILHAYALFGQTYYRVLDLN FSEGSIQDYPTVSKASVSFGGDVVANSYVATSRCRNSAKLLTTEGYKEMTYKGWFSLFVA HKLPFPSVSASCKALHLSEGKGTLQVLASDLKDPIQVTCSGEGFTAQLKELPATGGALEI QFKTAVTKTPEERIGKLTLTSGGASYEVYLYAMTETEQYIKASQSEINFSMIPVGEHKSV DLTVTQKNLMSAITCTIEGEGAKYYSVDKSEIAISNEPATLKVTYTPDKTIAANAKATAQ LVLTSGDVKTIVTLSGQTNTAVEEIVATKLSIATVAGTLYVHSDVARPVAIYTSAGEMVA QQLLSGDMEIALPAGVYFIQTARETYRVYIPAI >gi|228308695|gb|ACLR01000059.1| GENE 38 44419 - 45012 918 197 aa, chain + ## HITS:1 COG:no KEGG:BT_3629 NR:ns ## KEGG: BT_3629 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 4 195 5 195 195 206 59.0 4e-52 MNNKLSLVLLAALLSLALIGCNKQKQDQDQTAAAEMEAPTYMDVDALLASADSLVGQTVT VQGICTHLCKHGAKKAFLMGSDDTKVIRAEASEEMGAFAQECINSIVSVTGQLVEDRIDE AYLQNWEEQLKAQAAKEHGEGKAGCANEKKARGETADTPEARIADFRKQIAEREAKEGKA YLSFYHIDATSYKIEQQ >gi|228308695|gb|ACLR01000059.1| GENE 39 45039 - 45620 728 193 aa, chain + ## HITS:1 COG:no KEGG:BVU_2510 NR:ns ## KEGG: BVU_2510 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 9 191 7 188 191 208 51.0 9e-53 MRVNFKKVGRSVRRWSRLLHRDLSYLLATLIFIYALSGLYMNHRDSINPHYIITQREYQI PLEELQATGRLDAPAVRKLLDDIDLSGSYTKHYYPDDHTLKVFLKGRATLLIDTSTGVAV YESIERRPLISSMTRLHYNPGRWWTIVADVLAIGLILITLTGLLIVPGRRGLIGRGGILL LIGLAVPLLFLFL >gi|228308695|gb|ACLR01000059.1| GENE 40 45657 - 46541 233 294 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 21 290 26 304 309 94 28 1e-18 MDNLIECHNLTHYYGKRLIYRDLSFAVPRGRILGLLGKNGTGKTTTINILSGFLRPKSGV CRILGEDITRMPDRLRQDIGLLIEGHVQYSFMTIRQIERFYAPFYPKWRREAYYELMELL KVTERQHLSRMSCGQRSQVALGLLLAQNPKLLILDDFSMGLDPGYRRLFVDYLHHYAKEQ GTTIFLTSHIIQDMERLIDDCIIMDYGSILLQRPVAEILSEGRLYRCTLTDDRPLPEIDG LYHLEAHHRSGECYSFLPLPEVAERLTQAGVSYQDLTAHETTLEDAFIGLTGKY >gi|228308695|gb|ACLR01000059.1| GENE 41 46552 - 47223 661 223 aa, chain + ## HITS:1 COG:no KEGG:BT_3626 NR:ns ## KEGG: BT_3626 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 4 223 3 222 222 184 48.0 2e-45 MFTSIIYKEWLKLRLYALLSTLVALAVPLYGVIRIHRAIALQGADHIWLVMIQKGVVFVE SMRYVPLILGLLCAIAQFAPELSRRSLKLTLHLPQSPLRSTYQMLACGVTLLLWHTLLYI GVLFIGLQGLLAYELLAYVLSATLPWILAGFLGYLLMSWILLEPTWRRRILYTLVAVLLI RINFISPTAGAYAPFLPTLLIYTILSSTLVWLSVSRFKEGRQD >gi|228308695|gb|ACLR01000059.1| GENE 42 47230 - 48264 1064 344 aa, chain + ## HITS:1 COG:no KEGG:BT_3625 NR:ns ## KEGG: BT_3625 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 344 1 344 344 318 43.0 3e-85 MKRIATILLYITVALLIIWQIPWWYNYLRADASREPFTIYSQLLGDFIITDHDEGTMSYR SGQGMQYSREEVDSLLPTFYYRQLLTDGRLPDTLYGEAVTPQLIQRGAVTFRCSPRTLAA PAVALYPLLESASRRVKLEMPTDLFRITGQAIEFVDMKSNQTDKAKSALYTKLFQEKGFA FPAQCVAGNATAQKEYDNGYLLIDQRGKLFHLKQMAGKPYLRAIDLPEGVEAAQAFVWEL PSRRHIGLISTRDHQLYLIEREGYRSCRLEIPSWDPLREDLTIIGNDLDSYTLKVSTADV TSYYALDATNYTLLSTLQVDHPERTIPGLHFTSRLDSWVKPRLD >gi|228308695|gb|ACLR01000059.1| GENE 43 48363 - 48578 67 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 29 71 18 60 91 63 72.0 5e-09 MPLGALEPLVLTANSQPLTAKPPPSSSTEEIANLQGENENSPRNREIKVRKNEMKLRKKE IKVPKNFFIPP >gi|228308695|gb|ACLR01000059.1| GENE 44 48739 - 49176 784 145 aa, chain + ## HITS:1 COG:no KEGG:PGN_1488 NR:ns ## KEGG: PGN_1488 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 137 1 141 143 130 53.0 1e-29 MLKEILSISGKPGLFKLLTHTKNSIIVEDLETKRRIPAYASDRVVSLGDISIYTTTEETP LRVILQTLLDKYEGKPIDLKSLSGKEAYFDLFAEVLPEYDRQRVHDNDIKKIFRWYNILV ETDHTDFSEPAPEETSEASETPAEE >gi|228308695|gb|ACLR01000059.1| GENE 45 49239 - 50429 1877 396 aa, chain + ## HITS:1 COG:YPO0059 KEGG:ns NR:ns ## COG: YPO0059 COG0156 # Protein_GI_number: 16120412 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Yersinia pestis # 9 395 14 402 403 494 61.0 1e-140 MYKELKNFLTKEIQDTKDAGLYKEERIIITPQTAAIKVQGGKDVLNFCANNYLGLSDNPR LIKAAKDMMDSHGYGMSSVRFICGTQDIHKQLEQAIAHYFHTEDAILYAACFDANGGVFE PLFGPEDAIISDSLNHASIIDGVRLCKAKRYRYANANMEELEKCLQEAQEQRFRIIVTDG VFSMDGNVAPMDKICDLADKYDALVMVDECHSAGVVGKTGRGVAEAFDCFDRIDIHTGTL GKAFGGAIGGFTAGPKEIIEMLRQRSRPYLFSNSLPPAVVGAGLEVFKMLEEDDSLHTKL MENVKYFRDKMLAAGFDIKPTQSAICAVMLYDAPLSQRYAARLLEEGIYVTGFYYPVVPK GEARIRVQLSAAHEREHLDKAIAAFIKIGKELGVIK >gi|228308695|gb|ACLR01000059.1| GENE 46 50573 - 51784 928 403 aa, chain + ## HITS:1 COG:YPO2763 KEGG:ns NR:ns ## COG: YPO2763 COG0111 # Protein_GI_number: 16122967 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Yersinia pestis # 3 398 1 370 375 225 35.0 2e-58 MSLRIVVDSSIPYMADGMPLGVEAHYLPSGEITAEAVADADALMIRSVTHCDRALLEGSA VRLITSATAGFDHIDTDYCREAGIRWYNAPGCNAASVAQYVLTAIARIALEQGLAPEDIT LGIIGTGHTGGRIYQRAKALGMRTLLYDPPLVAAYDEHPDWQSYLEELDSKGLPRPYLAE AMPALRGSYVELETLLSSATIITCHVPLTKGGAYPTYHLVNEAFLRSAQQRPWLINACRG AVVDTAALVRAIDDKAVSGAVIDCWEGEPHIAQALLDRVFIGTPHIAGFSVHGKAQGAVQ SLRHLCDFFDLSEERIALAHPRPLAEPTLDLSGCEPWQMPWRAMLHTLDLPAIMRRLVAT PDTFEQQRVHYQHPYEPRDYTVRGVPASVRPALATLGFVVSNN >gi|228308695|gb|ACLR01000059.1| GENE 47 52019 - 52486 409 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469701|ref|ZP_04054669.1| ## NR: gi|228469701|ref|ZP_04054669.1| hypothetical protein PORUE0001_1646 [Porphyromonas uenonis 60-3] # 114 155 1 42 42 73 100.0 5e-12 MTATCQRRLLHKGESLYCFRNSASVTYGGMLPSDLTLSALRFILSAKSGQSCKQDCETVD FCNSLKRSQSLPEPLHPQRYKTLCEATTPRMRLLHKGESLCCFRDSASVTYGGMLPSDLT LSALRFILSAKSRQSCKQDCETVDFCNSLRMPCSV >gi|228308695|gb|ACLR01000059.1| GENE 48 52529 - 53278 996 249 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469690|ref|ZP_04054658.1| ## NR: gi|228469690|ref|ZP_04054658.1| hypothetical protein PORUE0001_1647 [Porphyromonas uenonis 60-3] # 1 249 1 249 249 432 100.0 1e-120 MRQRQILGLLLFVLLLGAGSSWAQTVDQKQVYEAYVKRDVNSWKRVIDRMHAEPNKSYAR IAELVEYEYGYIAECILRDRNSEAEQYLKRYKAHVDYLIECDYKTAEMTAYLSAYYTYRI GISWLRAALVGNKSISLMNRSIKMDKQNAIGLIQRGNAQYFAPAFFKGDAKKGAIDYFLR AERAMVSQGKSKGSWLYLSLLIQIAECYVGVGEQTQAEAWYRKVISLEPRLTWALDSKYL ESKQKHGQQ >gi|228308695|gb|ACLR01000059.1| GENE 49 53295 - 55328 2519 677 aa, chain + ## HITS:1 COG:BH3595 KEGG:ns NR:ns ## COG: BH3595 COG0556 # Protein_GI_number: 15616157 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Bacillus halodurans # 2 670 4 658 660 716 56.0 0 MSFQLTSKYKPTGDQPEAIAQLSQGVRDGLPHQTLLGVTGSGKTFTIANVIQQVDRPTLV ISHNKTLAAQLYSEFKAFFPNNAVEYFVSYYDYYQPEAYLINTDTYIEKDMAINAELDKL RLRATASLLSGRRDVIVVASVSCIYGMANPNDFENKIIKLEVGMQIERDALMRRLAESYY VNNKADFVSGSFRVKGDTIDIFPAIESFEGVAYRIELWDEEIDRITIIDPISAESQGTLD NLRIYPANLFVTTEEQTQRAIVEIKKDLGDRTAELEREGHLFEAKRLYERVSYDLEMIKA VGYCSGIENYSRYFDGRKPGERPFCLMDYFPDDYLLVIDESHVSIPQIRAMYGGDRARKT TLVEYGFRLPAALDNRPLEFSEFVNLTNQVIYVSATPADYELNMSEGVVVEQVIRPTGLL DPPIEIRPTEHQVDDLMEEIVIRTERNERTLVTTLTKRMAEELSDYLIRAGIKCAYIHSD VDTLERIQIMDSLREGAYDVLVGVNLLREGLDFPEVSLVAILDADKEGFLRSHRSLTQTA GRAARNVHGLVIFYADSITDSMQATIDETNRRRAKQIAYNEEHHITPTQVVSKRTNALSQ EGYVTTKSSAQAEAYVEEEIAVASPVAEYLTQDKLPELIEQVRKQMYAAAKELNFVEAAR LRDEMYALQSRLEDQKK >gi|228308695|gb|ACLR01000059.1| GENE 50 55333 - 55707 500 124 aa, chain - ## HITS:1 COG:BS_folA KEGG:ns NR:ns ## COG: BS_folA COG1539 # Protein_GI_number: 16077146 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Bacillus subtilis # 12 120 11 119 120 72 33.0 2e-13 MKATIRIVNAHFYSYIGALPEEQVLGNRYIVNLTATYDASQAVQSDDVADAVSYADLYNV VADKIGHSRDNLLEYVAGQILKEILTNYKLVDSCEITIQKAIPPIAGIIEAASVTLAASR EDNK >gi|228308695|gb|ACLR01000059.1| GENE 51 55733 - 56971 1480 412 aa, chain - ## HITS:1 COG:FN1106 KEGG:ns NR:ns ## COG: FN1106 COG1760 # Protein_GI_number: 19704441 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Fusobacterium nucleatum # 2 411 1 405 408 397 48.0 1e-110 MMDSIKQIYKIGHGPSSSHTIAPMRASKMFLTQIKELPVDRIEVTLYGSLAATGKGHMTD QAILSVLNPVHPTTILWEPRVELTFHPNGMRFVAFDKEGKELKEFKVYSIGGGTLANESF NEQVTTPVYELSTMADIIEYLDQRGLSYWEYVESCEGPDIWDYLAEVWEVMKQSVHEGLA AEGVLPGGLRLRRKAADTLVKSLSYKDSVKTRGMVYSYALAVSEQNAAGGRVVTAPTCGS CGVMPAVLLYLQETRSFRDERILRALATAGLFANVVRTNASISGAEVGCQGEVGVACAMA AAAASQLFGGTLHQIEYAAEMGLEHHLGLTCDPVCGLVQIPCIERNAFAASRALDANTYA NFTDGRHRVSFDQVVAAMHQTGKDLPSLYKETAEGGLALLHEKYGGKILIED >gi|228308695|gb|ACLR01000059.1| GENE 52 57580 - 58452 1145 290 aa, chain - ## HITS:1 COG:rfbA KEGG:ns NR:ns ## COG: rfbA COG1209 # Protein_GI_number: 16129979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Escherichia coli K12 # 2 285 5 285 293 358 61.0 5e-99 MKGIILAGGTGSRLYPLTKSVSKQLLPVYDKPMIYYPLSTLMLAGIREILIISTPQDLPS FERLLGDGSAYGIELTYAEQPRPEGLAQAFIIGREFIGTDDVCMVLGDNLFHGASFAAQL AAARDNVTQHRLATIFGYPVSDPTRYGVVCLDDTGKPTDIEEKPQHPKSNLAVVGLYFYP NDVVQVAQSITPSERGELEITAVNDYYLQQQQLSVISLGRGFAWLDTGTHEALMEATNYV SVIQKRQGLVIACLEEIAFHQGWITLAQLQVAADQQRGSTYGQYLASIKA >gi|228308695|gb|ACLR01000059.1| GENE 53 58464 - 59462 901 332 aa, chain - ## HITS:1 COG:no KEGG:PGN_0732 NR:ns ## KEGG: PGN_0732 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 16 329 16 322 327 142 25.0 1e-32 MPHFLQLVSTTLLLTLALFSCSATGKRHAQTPVPLETSFEVVDTTHTRTVTAQPYPMVEI PENVREPLQRAQYALTHFFDRWPEAAMEQVVDSAAMEQGLVDYLYVYSNMPAGSVTQEDL LRPLKLMRGKALSEALRLYTKYLYESGSPLKNHNLYIQALQWATTAPQVEYVDQVVYKDM LSIVSQNRVGTPASDFVITLAQSAAEGYTFADTTLYALRSKPKVVIFYTPGCDRCTHLLE EVAHDQILQRAYQAGKVDILYVSLVYERSEWEQGLSALPPFGTPAFNADLRLLEKSLYDL AVTPVIYVISSDGVVLQREASLAEVRHYVSTL >gi|228308695|gb|ACLR01000059.1| GENE 54 59564 - 60241 187 225 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1] # 76 207 214 344 347 76 32 3e-13 MNKLSITAGIVAVALSLSSCGELNGTLLGAGAGTAVGAGLGAGIGKVAGNTGAGAAIGAV VGGAAGALIGNRMDKQKKELEQQLPEGTQVESVNDGQAIKVVFDSGLLFNTSSSTLSSSS RNDLRKFADNLNKNHDTVLEIIGHTDSSGNDRINDPLSRDRAKSVRDFLEGQGVSSTRMK YEGRGSHEPVDTNATAEGKRKNRRVEVFILPSQKMIEEAKAGTLK >gi|228308695|gb|ACLR01000059.1| GENE 55 60304 - 61287 1275 327 aa, chain - ## HITS:1 COG:alr1912 KEGG:ns NR:ns ## COG: alr1912 COG0167 # Protein_GI_number: 17229404 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Nostoc sp. PCC 7120 # 2 321 1 323 343 198 33.0 1e-50 MVDLTSHYGGIALRNPIIAGSSGLTASLQQIKALAQAGAGAVILKSLFEEQIEATALQAE AEMATSYPEGLDYMLHYTRQHEVEKYLDLIREAKQAIDIPVIASVNCYRGGEWEAFAQSI QEAGADALELNVMRIETDPAQRGSDLEQELVDLAISITRTVQIPVVFKISDRFTNILYLA QELVKSGVKGLTCFNKSWQTDINIETLEIVQGPVISTGHELYNTLKYTGLLTGKLPQLAV SASGGVMDYAGVVKSLLVGASSVQVVSALYQHGASYLTKMLEELTQWMTQHGYRSIDEFR GNLNASKQSDQELYMRSQFMRYFSSKA >gi|228308695|gb|ACLR01000059.1| GENE 56 61622 - 61795 58 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469706|ref|ZP_04054674.1| ## NR: gi|228469706|ref|ZP_04054674.1| hypothetical protein PORUE0001_1656 [Porphyromonas uenonis 60-3] # 21 57 1 37 37 65 100.0 1e-09 MHKGESRCCFRDSASVTYGGMLPSDLTLSALRFILSAKPEQSCEQDCETVDFCNSLL >gi|228308695|gb|ACLR01000059.1| GENE 57 61869 - 62939 1245 356 aa, chain + ## HITS:1 COG:no KEGG:ZPR_0199 NR:ns ## KEGG: ZPR_0199 # Name: not_defined # Def: endonuclease # Organism: Z.profunda # Pathway: not_defined # 16 351 9 341 346 280 44.0 8e-74 MTHSMHYSRWAWLIGLLSLSFGVIYAQHSAAPQRVTVAFYNLENLFDTINQENNDEEFLP EGANRWTPERYQHKLRNMSHVISLIGGNGPAIIGVAEIENRGVLEDLIAQESLRDKHYNI VHYDSPDLRGIDCAILYQPDVYKVFASGARAVVIPNEPWIKTRDVVYASGLIDGEIVHVL VGHWPSRSGGEAVSLNRRMAAAKTMRSVADSLYTLFPGSKVIMMGDFNDDPISPSVRDGL GIQKSPDGLKASDYYTPMLQLYNKGMGTLAYRDVWNLFDIIAVNGELIGSNPTTWQLYRD PETTDMGFIFKQPFMIQQSGQYKGYTLRTFVGGQWQGGYSDHFPVYVYLVKGVAAK >gi|228308695|gb|ACLR01000059.1| GENE 58 62984 - 63532 604 182 aa, chain + ## HITS:1 COG:YPO2711 KEGG:ns NR:ns ## COG: YPO2711 COG1595 # Protein_GI_number: 16122915 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Yersinia pestis # 1 181 5 188 191 78 30.0 6e-15 MTEDELQEQIMKPETRAVAFTKAVQMYQEKLYWLIRRIVRQHDDADDVLQETFLKAWQNL GSFRGEAKLYTWIYRIALFEAINYNKKKKRITDNEYAVSEDTSYLLESAVADPYFDGDKG ELILQQALDTLPPKQRQVFEMRYFDEIPYREMAAITDTSEGALKASYHHAVKKIQQYVSE MN >gi|228308695|gb|ACLR01000059.1| GENE 59 63618 - 64064 443 148 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469682|ref|ZP_04054650.1| ## NR: gi|228469682|ref|ZP_04054650.1| hypothetical protein PORUE0001_1659 [Porphyromonas uenonis 60-3] # 1 148 1 148 148 249 100.0 3e-65 MPTPSEDLIRQIPSLSERLAHYRVPEGYFDDLSTRILSQIPLDEPVTGDQCDGTPSTRRR SRLWVRLRPWVAVAAALIAVVALWSVWRGDVQEPLRSDNEVASSVYDLSVTPLTDAEYAD YLYETCVDILLDDYAIGETMGALSEDEI >gi|228308695|gb|ACLR01000059.1| GENE 60 64090 - 64563 600 157 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469710|ref|ZP_04054678.1| ## NR: gi|228469710|ref|ZP_04054678.1| hypothetical protein PORUE0001_1660 [Porphyromonas uenonis 60-3] # 1 157 1 157 157 191 100.0 1e-47 MTRRKLYHLLWILLPMLLLPDFLVAQQSRSETDGRRREELVKLRKDFFAQELGLTADEAT YLDRILREADKKRIPLWRELREQYELTKSEALSESQATKCLQREQQIKSQLAEIDEQTII VLRKQIPARKLVNYLQVQREFARKYIKRNQLYRSDRR >gi|228308695|gb|ACLR01000059.1| GENE 61 64870 - 65100 244 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469689|ref|ZP_04054657.1| ## NR: gi|228469689|ref|ZP_04054657.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 76 1 76 76 118 100.0 1e-25 STAVTKRYDYDSRVLATWDGTRLYSGDKRYDYDSRVIATWDGTRIYGGDKRYDYDSRVRY TIDGPLPVAVAIYLIL Prediction of potential genes in microbial genomes Time: Fri May 27 09:11:15 2011 Seq name: gi|228308688|gb|ACLR01000060.1| Porphyromonas uenonis 60-3 deg1118640599766, whole genome shotgun sequence Length of sequence - 563 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 191 159 ## gi|228471259|ref|ZP_04056067.1| transposase Predicted protein(s) >gi|228308688|gb|ACLR01000060.1| GENE 1 3 - 191 159 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471259|ref|ZP_04056067.1| ## NR: gi|228471259|ref|ZP_04056067.1| transposase [Porphyromonas uenonis 60-3] # 1 62 64 125 125 131 100.0 2e-29 ARSAITHNPTFKQYYQRMKAQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRAL RA Prediction of potential genes in microbial genomes Time: Fri May 27 09:11:23 2011 Seq name: gi|228308676|gb|ACLR01000061.1| Porphyromonas uenonis 60-3 ctg1118640599775, whole genome shotgun sequence Length of sequence - 12300 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 8, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 425 - 497 81.8 # Lys CTT 0 0 - Term 639 - 672 -0.9 1 1 Tu 1 . - CDS 888 - 1772 1029 ## BT_2320 transcription regulator - Prom 1985 - 2044 2.3 2 2 Tu 1 . - CDS 2414 - 2554 89 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 3 3 Op 1 . + CDS 2969 - 3169 182 ## BVU_1167 hypothetical protein 4 3 Op 2 . + CDS 3200 - 3868 743 ## PGN_0015 probable transcriptional regulator 5 3 Op 3 . + CDS 3904 - 5715 2117 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) + Term 5893 - 5927 -0.5 + Prom 5732 - 5791 2.6 6 4 Op 1 . + CDS 5951 - 6916 1302 ## COG1186 Protein chain release factor B 7 4 Op 2 . + CDS 6930 - 8747 2254 ## COG0550 Topoisomerase IA - Term 8592 - 8619 -0.4 8 5 Op 1 . - CDS 8772 - 9416 612 ## COG0177 Predicted EndoIII-related endonuclease 9 5 Op 2 . - CDS 9431 - 10456 1157 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 10499 - 10558 2.1 - Term 10468 - 10524 0.6 10 6 Op 1 . - CDS 10560 - 10898 390 ## gi|228469750|ref|ZP_04054716.1| 35 kDa hemin binding protein 11 6 Op 2 . - CDS 10955 - 11194 126 ## + Prom 10828 - 10887 2.9 12 7 Tu 1 . + CDS 11120 - 11269 80 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Prom 11461 - 11520 1.8 13 8 Tu 1 . + CDS 11710 - 12298 216 ## COG4886 Leucine-rich repeat (LRR) protein Predicted protein(s) >gi|228308676|gb|ACLR01000061.1| GENE 1 888 - 1772 1029 294 aa, chain - ## HITS:1 COG:no KEGG:BT_2320 NR:ns ## KEGG: BT_2320 # Name: not_defined # Def: transcription regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 278 1 278 291 160 34.0 4e-38 MALFDPPEHLSCHHYATHANSGWLRVDAADQSTYRGITEFHAILFCTRGSVRLAIADELW ELHEGQMKFIPRGTSMTAIFSGDGELLDAYFDVVDFICDKISLQQLQQLRQEVAYAPEPL EVRGAIHSLLGTLAIYLNDQALCAYLHELKIKELFWNLRAYYSREELAAFLWPILGESKF HNDVISAFTCNARVSELAERVYMSTSAFYKRFREEFGTSPEQWIRMQSNKQILFLIQDYD LSIGEIASQLSFNSQSTFSRYCSKNFGLSPSNLRRTLQEGTSSEELLLRSSDND >gi|228308676|gb|ACLR01000061.1| GENE 2 2414 - 2554 89 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 45 43 87 91 69 71.0 6e-11 MKLRKKQIKVPINFFMPPWRISIFYRGNFDFLGSVVPGSSECIGVP >gi|228308676|gb|ACLR01000061.1| GENE 3 2969 - 3169 182 66 aa, chain + ## HITS:1 COG:no KEGG:BVU_1167 NR:ns ## KEGG: BVU_1167 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 4 66 3 65 78 85 60.0 5e-16 MTNNKRLYRSREAMIGGVCGGIADYFGWDPTVVRLIYLVATCSTAFAGLPIYILLWIVVP RQRYRN >gi|228308676|gb|ACLR01000061.1| GENE 4 3200 - 3868 743 222 aa, chain + ## HITS:1 COG:no KEGG:PGN_0015 NR:ns ## KEGG: PGN_0015 # Name: not_defined # Def: probable transcriptional regulator # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 5 208 6 212 234 135 39.0 1e-30 MSYPLLHELLDLVERYEEFRGNAEQSMSNFLRFADQSLEQQASTEESKTGSKGDAYLNAV IARDISFVYRYMRYLVRKAIKDTPLQTIDEYSYLITLMAKGEMTKTELNNYNVVEKTSGS EIIRRLLKSGLISQTRNLEDRRSLLLSITPEGRKVVKELLPRMQQSSDLLLRDLSWDQKI FLHTLHEQLYESNHPLFLTERDTDLEELLKKVPIKQATRPNK >gi|228308676|gb|ACLR01000061.1| GENE 5 3904 - 5715 2117 603 aa, chain + ## HITS:1 COG:HI0002 KEGG:ns NR:ns ## COG: HI0002 COG1022 # Protein_GI_number: 16271978 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Haemophilus influenzae # 3 602 14 602 607 369 35.0 1e-101 MNHLSDLLKLFATTYRHKSLLRYMDRTAEERWHEWTGEQLTEHAMLAAQALVRAGVKPGD CVALYTQNMMEGIITELGLMAIRAVCVPLYATCSPEQVAFITEHASIQLILVGEQFQYNN VYPLLATHPTLRHMVILDERVVRDPSDERSEYFDTFLSMGDAMPYETEVRAQLGAGTPDE TAVIIYTSGTTGTPKGVQITHHMILTQVERHQNLFPTLGDHDVSVNFLPLSHVFEKLWVY YCLATGIKVAVVTYPKRIMELMPQIRPTVMCNVPRYWEKVYQGVQEHIERSKPVMQRIYR KALRVGHKYHIGYRIHGLKAPWGLRISNAFYRYTVFYILKRVLGLERGRFFPTAGAPLSN EINEFLQSAGFNIVVGYGLSESAATVSCYLPGHYVIGSVGEVVPGVEVRIDPETQEIQLR GDTITPGYYHNDEANATAFTEDGWFRTGDAGRLEGRTLYYTERIKELYKTSNGKYIAPQQ VEALLSSSPLIEQCAVVADQRKFVAALIYPNYEQLRRRLRERGQETLADLPTAELAQRSE VCDMLLSHIEPLQAHLAGFEKVKRIALLAEPFTIEAGTLTPTLKLKRKAILEQYAELIEK LYL >gi|228308676|gb|ACLR01000061.1| GENE 6 5951 - 6916 1302 321 aa, chain + ## HITS:1 COG:lin2653 KEGG:ns NR:ns ## COG: lin2653 COG1186 # Protein_GI_number: 16801714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Listeria innocua # 12 311 28 322 327 264 46.0 2e-70 MRRVGEIRSWIEAFEAVDAATQEVALAYDFYKEEAVEEQDVDDAYARAIKLVEDLELRNM LSAEEDRLGAVLKVNAGAGGTESQDWASMLVRMYQRWAERSGYKVTITNWQDGDDAGVKT VTMQIEGELAYGFLKSENGVHRLVRVSPYNAQGKRMTSFASVFVVPLVDDSIEVEVNPAL LSWDTFRSSGAGGQNVNKVETGVRLHYQYTDPDTGVPEEIVIENTETRSQLENRENALRL LRSQLYDKELERRRAAQNEVEANKKKIEWGSQIRSYVFDDRRVKDHRTGYQTSDVNGVMD GDIDAFIKAYLMQTGAGATNE >gi|228308676|gb|ACLR01000061.1| GENE 7 6930 - 8747 2254 605 aa, chain + ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 2 601 4 593 709 421 41.0 1e-117 MIVCIAEKPSVARDIAKILGATEARSGYIEGNGYAVTWTYGHLCTLKEPEDYQSNWQGWR LASLPMIPERFGIKLIHEEHIERQFAVIQGLVSQAERVINCGDAGQEGELIQRWVLQLAG CTCPVERLWISSLTDQSIREGFANLRPSKDLDTLYHAGLARAIGDWLLGINGTRLYTLTD RYSSRQRGVRSVGRVQTPTLALVVDRQAEIESFVPVTTYEMQTTYRGTLFRADTTQEVEV TFAERQHVEELIERIAKEPLVVQAVEQKKSTEYPPRLFDLTSLQVEANKKFGFTAEQTLR LIQSLYEKKVTTYPRVDTTFLPEDQYPKVGETLQGIARHAKLGGFIAPLLSSGKPLKKSK KVFDNKKITDHHAIIPTGQLSSGLTPDEEQIYLLVALRYIAAFYPDAKVSTTTVRATVEE YPLRASGKTILVEGWREVLKPDSGKEGDDTSDGAKDKEQTLPPFKEGESGPHEPTIREST STPPRYYTEATLLRAMETAGKGVEDEELRDALKMNGIGRPSTRAAIIETLFKRGYIVREG KSLRATPAGIQLIESIQDPLLKSVELTGRWELKLRQIESREYDPGQFLNELKAQVTALVT EVRGF >gi|228308676|gb|ACLR01000061.1| GENE 8 8772 - 9416 612 214 aa, chain - ## HITS:1 COG:jhp0532 KEGG:ns NR:ns ## COG: jhp0532 COG0177 # Protein_GI_number: 15611599 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Helicobacter pylori J99 # 12 214 15 214 214 196 48.0 4e-50 MTLDERYGLALEGLTKLYPNADTELIYHDPFSLLVAVVLSAQCTDKRVNMVTPQLMAHFP TPEAMARASVDDLLAFMGSVSYPNNKAKHLIGLSERIAQEHHGVVPSTREELEALPGVGR KSASVMLAVCFDTPAMPVDTHVFRVAKRIGLASSRATTPLAVEQALRRRIPREQLIRAHH QLILLGRYICKARKPLCDECTLTACCRHYATAKS >gi|228308676|gb|ACLR01000061.1| GENE 9 9431 - 10456 1157 341 aa, chain - ## HITS:1 COG:SA0985 KEGG:ns NR:ns ## COG: SA0985 COG0016 # Protein_GI_number: 15926722 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Staphylococcus aureus N315 # 9 336 12 345 352 330 48.0 2e-90 MLDQIQQLQSALAHLVASTPEEAEQLRIAYLGKKGRITQLFEAFRQLPPEEKRQLGATLN QLKQEATARIKELLASVATQSVQQTIDLTRPAVPYPLGSRHPLTLIQEEICNIFERMGFS IAEGPEVEDDWHVFEALNFPPDHPARDMQDTFFVDHKSNILLRTHTSSVQTRVMKSQEPP IRVLCPGRVYRNEAISARAHCFFHQIEGLYIDRNVSYADLREALLFFAQSLFGADTQIRL RPSYFPFTEPSAEMDISCGLCHGEGCGFCKHTGWVEILGCGMVDPNVLENCGIDSSVYSG YAFGLGVERIANLKYNVKDLRYFSENNLDFLSQFTAHTTPL >gi|228308676|gb|ACLR01000061.1| GENE 10 10560 - 10898 390 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469750|ref|ZP_04054716.1| ## NR: gi|228469750|ref|ZP_04054716.1| 35 kDa hemin binding protein [Porphyromonas uenonis 60-3] # 1 112 1 112 112 190 100.0 3e-47 MKQILHIIYTLVVCALLVPCSALASDKSEATERQLLSDQSLVVVASQPSALEQSAPQVEV RDGAIVPLCEYDQMQVFNVMGQEVRNEHLPSGVYLVRIVVQGETYTLKVVIR >gi|228308676|gb|ACLR01000061.1| GENE 11 10955 - 11194 126 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENGNPPRRHKKILRNFDLLLPKFHFILPNFYFGAPWRIFVSSLEISDFLPRGEMRGGRC ERAGVPLQVATREICTCPK >gi|228308676|gb|ACLR01000061.1| GENE 12 11120 - 11269 80 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 47 43 89 91 74 74.0 2e-12 MKLRKKQIKVPKNFFMPPWRISIFHRGNFNFLGGVVSGSSECVEVHRDE >gi|228308676|gb|ACLR01000061.1| GENE 13 11710 - 12298 216 196 aa, chain + ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 71 192 132 253 292 103 55.0 2e-22 MSKQLRIWLFVLLSTLLTSTTLPAEGVITMTTSKSVGETIELGISAKGNISIDGVLETGK TNRYGFKYYTIKSQRITIQGDVTTLYCYKNQLTSLDVSSCIALTNLYCDENQLTGLDVSQ NTALTKLGCGNNQLTSLNVSSCTALTELWCHHNQLTSLDVSKNTALTKFVCNENQLTNLD VSQNTALKTLGCGKTS Prediction of potential genes in microbial genomes Time: Fri May 27 09:11:51 2011 Seq name: gi|228308672|gb|ACLR01000062.1| Porphyromonas uenonis 60-3 deg1118640599702, whole genome shotgun sequence Length of sequence - 518 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 23 - 518 484 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308672|gb|ACLR01000062.1| GENE 1 23 - 518 484 165 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 131 85 209 227 85 40.0 6e-17 MDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTD YEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALYNTA RPHRALNKKTPMQMRIPDYPNPLTTQPSKKQTSKNDSPTAPSLKT Prediction of potential genes in microbial genomes Time: Fri May 27 09:11:52 2011 Seq name: gi|228308667|gb|ACLR01000063.1| Porphyromonas uenonis 60-3 deg1118640599755, whole genome shotgun sequence Length of sequence - 795 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 68 - 418 324 ## gi|228469755|ref|ZP_04054719.1| hypothetical protein PORUE0001_2033 2 1 Op 2 . + CDS 411 - 617 235 ## gi|228469756|ref|ZP_04054720.1| hypothetical protein PORUE0001_2034 3 1 Op 3 . + CDS 520 - 793 111 ## gi|228471154|ref|ZP_04055973.1| hypothetical protein PORUE0001_1567 Predicted protein(s) >gi|228308667|gb|ACLR01000063.1| GENE 1 68 - 418 324 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469755|ref|ZP_04054719.1| ## NR: gi|228469755|ref|ZP_04054719.1| hypothetical protein PORUE0001_2033 [Porphyromonas uenonis 60-3] # 1 116 1 116 116 199 100.0 5e-50 MKRHTIYSILLLPLLVLSLVSCDKLIYDRGECPTILVFTPYMQTPCMSDSAYIGKAGYMD IVISVPSSGEIIAYKHLEPADLTAASRIEIPVPNECGETYRYTIWVGATPHALYYE >gi|228308667|gb|ACLR01000063.1| GENE 2 411 - 617 235 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469756|ref|ZP_04054720.1| ## NR: gi|228469756|ref|ZP_04054720.1| hypothetical protein PORUE0001_2034 [Porphyromonas uenonis 60-3] # 1 68 1 68 68 117 100.0 2e-25 MSDLAPASGNKHPDCRLALRLNEQDRHEGLLPEPLYFATDTIECPMPPRGSTIRVPVRAK PDALQQRL >gi|228308667|gb|ACLR01000063.1| GENE 3 520 - 793 111 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471154|ref|ZP_04055973.1| ## NR: gi|228471154|ref|ZP_04055973.1| hypothetical protein PORUE0001_1567 [Porphyromonas uenonis 60-3] # 20 91 85 156 234 139 98.0 5e-32 MLQTPLSVLCLLEVARLESPFAPNLTRYSNDFDISLTELPSKVIYPLHIEIEDNNAAYNF MGQLTNPTKHVIYQAPLPNEGTTRSTRLSTL Prediction of potential genes in microbial genomes Time: Fri May 27 09:12:08 2011 Seq name: gi|228308664|gb|ACLR01000064.1| Porphyromonas uenonis 60-3 deg1118640599644, whole genome shotgun sequence Length of sequence - 578 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 576 233 ## CBO1693 phage protein Predicted protein(s) >gi|228308664|gb|ACLR01000064.1| GENE 1 3 - 576 233 191 aa, chain - ## HITS:1 COG:no KEGG:CBO1693 NR:ns ## KEGG: CBO1693 # Name: not_defined # Def: phage protein # Organism: C.botulinum # Pathway: not_defined # 127 187 210 270 297 82 55.0 1e-14 NTQVADVEQSTAKPLSSSSTTQEEKAKGFASFPPSSPFSLSPVTPNSIPPIIPQSRHLRF AQMTQLQPRAREAKFLGADDGQLSLTDVSPHKGLREQEALAFVDYFNSKLATKQANIPAL RSLQGSRLAELNARLREYGADALLEAVDNLVSSEMLNGQNARGWHATFDWFVKPSNFAKV LENNYKELFTP Prediction of potential genes in microbial genomes Time: Fri May 27 09:12:12 2011 Seq name: gi|228308662|gb|ACLR01000065.1| Porphyromonas uenonis 60-3 deg1118640599597, whole genome shotgun sequence Length of sequence - 538 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 138 - 197 2.5 1 1 Tu 1 . + CDS 240 - 470 64 ## Predicted protein(s) >gi|228308662|gb|ACLR01000065.1| GENE 1 240 - 470 64 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPPWRISIFYRGNFDFLGSVVPGSSESYTLECLETSNGCRDARSCVRPRTTSRVTAVRTT RSTDLISGRFLFTLQS Prediction of potential genes in microbial genomes Time: Fri May 27 09:12:17 2011 Seq name: gi|228308659|gb|ACLR01000066.1| Porphyromonas uenonis 60-3 deg1118640599695, whole genome shotgun sequence Length of sequence - 514 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 514 523 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308659|gb|ACLR01000066.1| GENE 1 22 - 514 523 164 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 40 154 123 238 294 89 39.0 3e-18 MLLRSRRRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSL TMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYKKHGFDLKGLIFHSDRGCQYVSKQMT DYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPI Prediction of potential genes in microbial genomes Time: Fri May 27 09:12:17 2011 Seq name: gi|228308656|gb|ACLR01000067.1| Porphyromonas uenonis 60-3 deg1118640599575, whole genome shotgun sequence Length of sequence - 560 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 12 - 221 229 ## + Prom 245 - 304 4.3 2 2 Tu 1 . + CDS 418 - 559 134 ## gi|228471121|ref|ZP_04055945.1| ATP synthase subunit E Predicted protein(s) >gi|228308656|gb|ACLR01000067.1| GENE 1 12 - 221 229 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKKLQFHAHENPVSSVGNRKSLPRNGQILRNFEIFLPKFHFILPNFYIQPPWGMFVFQR FICRFLREN >gi|228308656|gb|ACLR01000067.1| GENE 2 418 - 559 134 47 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471121|ref|ZP_04055945.1| ## NR: gi|228471121|ref|ZP_04055945.1| ATP synthase subunit E [Porphyromonas uenonis 60-3] # 1 47 1 47 197 70 100.0 2e-11 MDSKIKELTDKIYHEGVEKGNQEAAQILAKAKQQSDDMIATAQAEAQ Prediction of potential genes in microbial genomes Time: Fri May 27 09:12:26 2011 Seq name: gi|228308653|gb|ACLR01000068.1| Porphyromonas uenonis 60-3 ctg1118640599600, whole genome shotgun sequence Length of sequence - 1635 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 465 - 1635 858 ## COG4886 Leucine-rich repeat (LRR) protein Predicted protein(s) >gi|228308653|gb|ACLR01000068.1| GENE 1 465 - 1635 858 390 aa, chain + ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 2 115 146 259 292 76 42.0 1e-13 MLDCSGDSLTNLNLSGCTSLTMFFFINNRLVSLNISGCTALTKLACSRNQLTSLDASGCT ALKTLDCRDNKLTSLNVSGCTALKTLDCSDNTLSDINLLQCFELNWLRCSINQIKASSMT ALINSLPDRQGKTVGMLQVVDKESTKEGNLCFTDHVTKAKAKNWQAQSYQSNAWSDYAGS EVPTFAVTSSATTGGMVAIIGVPDLTKVPYDTELTIVATPAEGYELTALTANGTDILASK KVIVKEAVEVKATFAKKSFAVTFDKVGEGTITATGADDLNAVAYGTELTIVATPAAGYDL QSLVAGGVDITTTKKVVVKDNVTVTATFAKKNFAVTFEKEGEGTITATGASDLNSVAYGT ELTINATPAMGYELVSITANGTDITATKKI Prediction of potential genes in microbial genomes Time: Fri May 27 09:12:38 2011 Seq name: gi|228308606|gb|ACLR01000069.1| Porphyromonas uenonis 60-3 ctg1118640599487, whole genome shotgun sequence Length of sequence - 42362 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 17, operones - 9 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1335 1802 ## COG0015 Adenylosuccinate lyase + Prom 1338 - 1397 2.2 2 2 Op 1 . + CDS 1508 - 2926 1374 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 3 2 Op 2 . + CDS 2955 - 4370 1698 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 4397 - 4438 11.1 - Term 4385 - 4426 7.3 4 3 Op 1 . - CDS 4453 - 5766 1431 ## COG3681 Uncharacterized conserved protein 5 3 Op 2 . - CDS 5790 - 6329 446 ## BDI_1538 hypothetical protein - Prom 6367 - 6426 1.6 - Term 6717 - 6768 13.3 6 4 Op 1 31/0.000 - CDS 6818 - 7990 1581 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 7 4 Op 2 . - CDS 8019 - 9650 2342 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 8 4 Op 3 . - CDS 9668 - 9949 333 ## gi|228469770|ref|ZP_04054728.1| conserved hypothetical protein - Prom 9981 - 10040 2.0 9 5 Tu 1 . - CDS 10046 - 10555 283 ## COG1438 Arginine repressor + Prom 10512 - 10571 4.3 10 6 Tu 1 . + CDS 10802 - 11740 1102 ## COG0462 Phosphoribosylpyrophosphate synthetase + Term 11763 - 11810 8.6 + Prom 11792 - 11851 2.4 11 7 Op 1 . + CDS 11886 - 12701 995 ## COG4105 DNA uptake lipoprotein 12 7 Op 2 . + CDS 12760 - 13095 562 ## BVU_3042 hypothetical protein 13 7 Op 3 . + CDS 13128 - 13589 629 ## PG1218 hypothetical protein 14 8 Tu 1 . + CDS 13654 - 15156 1956 ## COG0516 IMP dehydrogenase/GMP reductase + Term 15202 - 15238 -0.8 + Prom 15191 - 15250 2.6 15 9 Tu 1 . + CDS 15363 - 16175 786 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase - Term 15985 - 16030 4.1 16 10 Tu 1 . - CDS 16188 - 16820 620 ## PGN_1977 hypothetical protein - Prom 16911 - 16970 4.4 + Prom 16840 - 16899 4.5 17 11 Op 1 . + CDS 16939 - 17787 1022 ## DehalGT_0014 putative lipoprotein 18 11 Op 2 . + CDS 17806 - 18177 543 ## PG1707 hypothetical protein 19 11 Op 3 . + CDS 18221 - 18598 442 ## gi|228469802|ref|ZP_04054760.1| conserved hypothetical protein 20 11 Op 4 . + CDS 18608 - 19633 1140 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 21 11 Op 5 . + CDS 19655 - 21727 2510 ## COG4232 Thiol:disulfide interchange protein + Term 21748 - 21797 14.1 + Prom 21740 - 21799 3.0 22 12 Op 1 . + CDS 21895 - 22395 650 ## COG0716 Flavodoxins 23 12 Op 2 . + CDS 22450 - 22809 355 ## BF2668 hypothetical protein + Term 22843 - 22902 0.6 24 13 Tu 1 . - CDS 23109 - 23363 188 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 - Prom 23541 - 23600 78.0 + TRNA 23524 - 23599 82.2 # Lys TTT 0 0 + Prom 23525 - 23584 78.0 25 14 Op 1 . + CDS 23788 - 24894 1188 ## COG0860 N-acetylmuramoyl-L-alanine amidase 26 14 Op 2 . + CDS 24911 - 25807 1042 ## PGN_1304 hypothetical protein 27 14 Op 3 . + CDS 25822 - 26019 350 ## gi|228469809|ref|ZP_04054767.1| hypothetical protein PORUE0001_0028 28 14 Op 4 7/0.000 + CDS 26035 - 26565 687 ## COG2059 Chromate transport protein ChrA 29 14 Op 5 . + CDS 26578 - 27180 760 ## COG2059 Chromate transport protein ChrA 30 14 Op 6 . + CDS 27177 - 28526 720 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 31 14 Op 7 . + CDS 28535 - 29554 902 ## COG1216 Predicted glycosyltransferases + Term 29697 - 29730 -0.9 32 15 Tu 1 . - CDS 29737 - 30108 504 ## COG3169 Uncharacterized protein conserved in bacteria + Prom 30382 - 30441 4.9 33 16 Op 1 . + CDS 30463 - 30948 794 ## COG0386 Glutathione peroxidase 34 16 Op 2 26/0.000 + CDS 30964 - 31419 576 ## COG1585 Membrane protein implicated in regulation of membrane protease activity 35 16 Op 3 . + CDS 31442 - 32458 1411 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 36 16 Op 4 . + CDS 32511 - 33386 625 ## COG2184 Protein involved in cell division + Term 33431 - 33492 8.9 37 17 Op 1 . + CDS 33519 - 35837 2040 ## COG1203 Predicted helicases 38 17 Op 2 . + CDS 35842 - 36558 900 ## Cvib_1301 CRISPR-associated RAMP Csd5d family protein 39 17 Op 3 . + CDS 36555 - 38402 1644 ## Neut_1016 CRISPR-associated RAMP Csd1 family protein 40 17 Op 4 2/0.000 + CDS 38414 - 39277 1438 ## COG3649 Uncharacterized protein predicted to be involved in DNA repair + Term 39295 - 39342 7.2 41 17 Op 5 12/0.000 + CDS 39353 - 40030 603 ## COG1468 RecB family exonuclease 42 17 Op 6 13/0.000 + CDS 40027 - 41058 740 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 43 17 Op 7 . + CDS 41058 - 41348 311 ## COG1343 Uncharacterized protein predicted to be involved in DNA repair Predicted protein(s) >gi|228308606|gb|ACLR01000069.1| GENE 1 1 - 1335 1802 444 aa, chain + ## HITS:1 COG:RSc2720 KEGG:ns NR:ns ## COG: RSc2720 COG0015 # Protein_GI_number: 17547439 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Ralstonia solanacearum # 9 443 12 447 457 437 51.0 1e-122 CPLFKQSLPLDGRYASKTAPLAAYSSESALIRYRVRIEVEYLIALTQAIPALSKAITEPK QQALRQLYKEWSTEAAQEVKDIEATTNHDVKAVEYYIKRHLPQLGLEEIEEYVHFGLTSQ DVNNTAFPLMLREALHEVYLPTLQQLIEQLRQLANEWHDVAMLARTHGQPASPTRLGKEI MVFVYRLEQQTKALEQVPITGKFGGATGNFNAHHVAYPAIDWVAFGNSFLTSLGLEREQY TTQISNYDNLAALFEAMARINTILIDLARDFWNYISMGYFGQKIKAGEVGSSAMPHKVNP IDFENAEGNLGLANAVALHLASKLPISRLQRDLTDSTVIRNQLVPMGYTMIAFSSLSKGL GKLVIHPERIAHDLDCNWAVVAEAIQTILRREGYPHPYETLKALTRTGEEISQETIAHFI DTLEVAEEVKAELRQITPHNYVGL >gi|228308606|gb|ACLR01000069.1| GENE 2 1508 - 2926 1374 472 aa, chain + ## HITS:1 COG:SA1324 KEGG:ns NR:ns ## COG: SA1324 COG1187 # Protein_GI_number: 15927074 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Staphylococcus aureus N315 # 207 436 7 238 245 165 41.0 2e-40 MSIDSNPTSEAQHKTSTSADSSAEVPSSASTGKRRRQRIARPASSESLIRVKVSGEAGAT VTHRNIDASEMVKPRDINAEKALERRFDFDEQHLGGRSLHKVTTSVSLVGDGNQDDPVIY PFAKQRGKGKRPTAHSGEARTSSPRRKREASADSTDRKSKRSSAPRKSAGQRTNKQRKDE SKPRTPKAPVEPVRYTSPLVEAGEPIRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVS ELGSQVLPTDQVMVDDKPVTLEAKVYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERI YPIGRLDRNTTGILLLTNDGDLAVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELE DGEIHADAISYITGQTHDKVGIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLTKKDLP RGRWRYLTPEEVRYLRMGIKEQEDNGVAPTTKVYHKHQETPDHPFSSEEIED >gi|228308606|gb|ACLR01000069.1| GENE 3 2955 - 4370 1698 471 aa, chain + ## HITS:1 COG:alr3658 KEGG:ns NR:ns ## COG: alr3658 COG0017 # Protein_GI_number: 17231150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Nostoc sp. PCC 7120 # 16 471 10 463 463 553 56.0 1e-157 MNNSLPRTTIKELPQLAQRQLPQPVCVKGWVRTKRGNKAVCFVALNDGSTIHSIQIVIDK TQTDPKLIEQITTGAAIGVVGTLVASQGQGQEYEIQASEITIYGTSDPVRYPLQKKGHTL EFLREIAHLRPRTNTFAAVLRIRHNMAYAIHTFFHERGYFYLHTPIITSSDAEGAGQMFT VTTLDMNKLPLAKDGSVDYSKDFFGKHTSLTVSGQLEGELGAMALGGIYTFGPTFRAENS NTPRHLAEFWMVEPEVAFMDNEGNQDLAEAFTKHCLQWALDHCMDDLEFLAEHYDKELIE RIRFVVERPFVRTTYTEGVAILEEAVRNGKKFEFPVYWGADLASEHERYLVEQHYNAPVI MTDYPKEIKAFYMKQNEDGKTVRGMDVLFPHIGEIIGGSERETDIDKLTARAQEVGIKDK DLWWYLDTRRYGSAPHAGFGLGFERLLLFVTGMTNIRDVIPFPRTPNNANF >gi|228308606|gb|ACLR01000069.1| GENE 4 4453 - 5766 1431 437 aa, chain - ## HITS:1 COG:yhaN+M KEGG:ns NR:ns ## COG: yhaN+M COG3681 # Protein_GI_number: 16132252 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 5 435 4 434 436 257 39.0 4e-68 MKTTNTLTPALRQEIISLVHQEVLPATGCTEPVAVSLCTAYASATLGDFTPESVSVLLSP NVLKNALGVGIPGTGMIGLPIAIALGIVIAQPDKGLTLLDSFTPEQLAEAKQLVEAKVIT IGTKPEPVDKLYAEVTIQTTSGETATAIISGKHDHLTYLAKGTQVLEDHPIGQQEDVEDE EELTLNFSLVYDFATTAPLEEIEFILADAEVNAEASRLSMKSNYGHAVGRMVQSDLGRKY LGNSTLTQIISATSAACDARMDGAPVTVMSNSGSGNQGITATMPVLTFAKEQQKSHEETV RALMLSNLMVIYIKQKLGRLSALCGCVVASTGAACGLTYLLGGNKQQVSYAVKNMVGNIT GLLCDGAKPSCSLKVSSGVSTAMFSALLAMEQKVVTGSEGIVDDDVDQTIDNLTSIGRVG MNETDRLVLNIMTSKNH >gi|228308606|gb|ACLR01000069.1| GENE 5 5790 - 6329 446 179 aa, chain - ## HITS:1 COG:no KEGG:BDI_1538 NR:ns ## KEGG: BDI_1538 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 176 1 177 179 94 33.0 2e-18 MNYILCPHCTTKISEETILANADCRGKVAMLCPTCSESLRFRLRGTTLEHLKARYADFAP EGEPVRAYLQLIANDFAYAALLPLYEGCNTIGSYNGRGTSVTVPIHSSDPSLGRNHCQIT IEPDGQAIIQDLDSMTGTFVAGVEYLPDTFRELQSGDVITLGATSLIYVTRTDYEETNP >gi|228308606|gb|ACLR01000069.1| GENE 6 6818 - 7990 1581 390 aa, chain - ## HITS:1 COG:Cj0082 KEGG:ns NR:ns ## COG: Cj0082 COG1294 # Protein_GI_number: 15791472 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Campylobacter jejuni # 6 386 10 371 374 303 48.0 3e-82 MDYAFLQQYWWFLVSLLGALLVFLLFVQGGQTFIFAARRDEPLQRMIVNSTGRKWEFTLT TLVTFGGAFFASFPLFYSTSFGGAYWVWILICLTFVIQAVSYEYQSKHGNIWGKKTFQTF LFINGVLAPVLLGAAVSTLFTGGNFVVDKSAIYDLSSSMQTISVWQPDPLTGLQLHGLEA IFNPWNVVLGVTLLFLARTTALLYFINNIEDEVAYERARKSLLPNAAIFVVLFVAYVVFL MVTKGYDVDPSTGAVSLVQYKYLHNFLAMPVILIVFLVGVVLVLAGVILTLVKKGFRKGI WLEGVGVVLAVLGLLLILGYNNTAYYPSIADLNSSLTLQNSSSSPYTLKAMSIVSLLIPF VLAYIVYAWRAIDRKKITRHEMGQDEEIKY >gi|228308606|gb|ACLR01000069.1| GENE 7 8019 - 9650 2342 543 aa, chain - ## HITS:1 COG:Cj0081 KEGG:ns NR:ns ## COG: Cj0081 COG1271 # Protein_GI_number: 15791471 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Campylobacter jejuni # 1 529 1 508 520 502 49.0 1e-142 MNVDALLLWSRLQFALTACYHWLFVPLTLGLGVIMSIAETKYYRTNRPEWKKWAMFWQKL FGINFAIGVATGLILEFEFGTNWSNYSWLVGDIFGAPLAIEGILAFFMEATFIAVMFFGW NKVSRGFHLASTWLTVIGATISAVWILVANAWMQDPVGMSFNPATVRSEMADFWAVAFSS SAVNKFWHTTISSWTLGSVFALGVCAIYILRGKHKEFALANSRIIAPFGLIAALLTAFTG DTSGYNVAQRQPMKLAAMEALYDAGESTPDGKTADGKGLGLSAIGLLDCDKLTPQAEANQ DPFIFNIKMPYMLSWLGTRSTNGYVPGINNILEGGYYDKDGNQALSADERMRRGKIAIEA LAAYGEAQKAGDAAEMDRQNAIIQENFDHFGYGYVQDKADLVPNVPLMYYAFRIMVGLGF LFILLFLLIWILQRKKSYEEYARYRWLHIITVICIPLAWIASQAGWVVAEMGRQPWAIQD MLPLNAAVSKLAPENVMTTFFIFAVLFTILLIAEVSIMVKAIKHGPESHLNDVEQLFSKR ESK >gi|228308606|gb|ACLR01000069.1| GENE 8 9668 - 9949 333 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469770|ref|ZP_04054728.1| ## NR: gi|228469770|ref|ZP_04054728.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 93 1 93 93 188 100.0 8e-47 MNMNTESTGTKGKTHWGLRWFYDLYRDGLRSQSRTSRMLWIIVAIKLLIMFAILRPIFFP RVIAEQGDKKAQIEYVQDQLTAPVVDTLHHSNH >gi|228308606|gb|ACLR01000069.1| GENE 9 10046 - 10555 283 169 aa, chain - ## HITS:1 COG:Cgl1366 KEGG:ns NR:ns ## COG: Cgl1366 COG1438 # Protein_GI_number: 19552616 # Func_class: K Transcription # Function: Arginine repressor # Organism: Corynebacterium glutamicum # 5 148 2 147 156 58 34.0 7e-09 MSKQTKSQRLGVIADLLRTHEVTDQAMLLELLRGRNISITQGTLSTYLAELGATKGVRPG SFKSCYQLPLMPQADAVTTQPTGLISPTVGFRSYALSGQMLVIRTEPGFAQSIATVLDSS SSSLSLGSVAGYDTIIVALAEEATDAEVIDWLHRIIPESILAIGGRRRS >gi|228308606|gb|ACLR01000069.1| GENE 10 10802 - 11740 1102 312 aa, chain + ## HITS:1 COG:jhp0679 KEGG:ns NR:ns ## COG: jhp0679 COG0462 # Protein_GI_number: 15611746 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Helicobacter pylori J99 # 6 311 13 318 318 317 53.0 2e-86 MNELPYLVFAGSASQNLAEKICDSLGCPLGKMRTEHFADGEFAVFYEESIRGKDIFLVQS TYPNADNIMELLLMIDAAKRASAHYITAVIPYFGWARQDRKDKPRVSIGAKLIADLLSVA GITRLITMDLHADQIQGFFNVPVDHLYGSTVFTEYIEHNIPVENLCIATPDVGGTKRANS YARHFGVPMVICHKRRAKANEVAEMTIIGDVAGKDVILVDDIVDTAGTMTKAADLMLEHG AKSVRAFATHAVMSDPATKRIDQSGLTEMIFTDSIPYSKKSEKVRIISVAELFAESIRRV CSHESISSLYTF >gi|228308606|gb|ACLR01000069.1| GENE 11 11886 - 12701 995 271 aa, chain + ## HITS:1 COG:SMc01876 KEGG:ns NR:ns ## COG: SMc01876 COG4105 # Protein_GI_number: 15965919 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Sinorhizobium meliloti # 34 224 50 235 288 63 26.0 5e-10 MTRQTLLRILVLSCWLLCTSSCAEYMRIQKSKDPTLRYSYAKKYYNEGKYSRVAELMVDV LPHYEGTQEGAQALYIMADALLQNKQESSAAEYFRRLYSKYPQDARAAEARYKTGLALYR IAPDPRLDQSITYSALKELQGFLEAYPQSEHRKEVEQMLFDLQDNLAKKELITADLYYNL GTYIGNNYISAIITARNALKAYPYTKHREDLLFIIVEASYQQAINSVESKKQGRLREVID AYYNYENAFPNGKHLKRAKTLRDRAQRMIVS >gi|228308606|gb|ACLR01000069.1| GENE 12 12760 - 13095 562 111 aa, chain + ## HITS:1 COG:no KEGG:BVU_3042 NR:ns ## KEGG: BVU_3042 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 6 111 4 108 111 99 55.0 5e-20 MTTNNKKQPVPQSTITRSLPELWEQTGNIYETVRIISKRANQISVEMRDEIREKIQEVTN YQDALDETPTENSEQIEISKYYEQLPKPTLVATTEFLNGEVYFRLPEESQD >gi|228308606|gb|ACLR01000069.1| GENE 13 13128 - 13589 629 153 aa, chain + ## HITS:1 COG:no KEGG:PG1218 NR:ns ## KEGG: PG1218 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 153 1 152 152 85 35.0 7e-16 MWQRIQTLYLFISGVTSTLLLLVTLFTVNPSGQEVLYTANFTGLIVSGWTSIKYFNLVTF VLTSLVTILSFATIFLYKWRKLQIRLTIIGLLLMVAAIVAFAYMLWQQADLLQATTKMQG WIVLPVISLLCLYMAMRNIIKDDILVRASNRLR >gi|228308606|gb|ACLR01000069.1| GENE 14 13654 - 15156 1956 500 aa, chain + ## HITS:1 COG:lin0179_3 KEGG:ns NR:ns ## COG: lin0179_3 COG0516 # Protein_GI_number: 16799256 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Listeria innocua # 231 498 3 269 276 415 72.0 1e-115 MAIIFPDTSHTFGEYLLIPGLTTPECTVDKISLRTPLAKYSPAKEESRINLNIPFVSAIM QSVSNDTMAIALARNGGLSFIFGSQPIEEEAEMVARVKKFKAGFVRSDANVSPKDTLADV LAITQNTGHSTIGVTDDGTPDGVLCGIVTSRDYRLSTDSMDRKVADFMTPFERLTTGRKG ISLSEANDIIWSHKLNALPIIDEDRRLCYFVFRKDYDSHKENPLELQNPHNKTLMVGAGI NTRDYKERVPALVEAGADVLCIDSSDGFSVWQKETITWIREQYGDRVIVGAGNVVDQDGF RYLVEAGADFIKVGIGGGSICITREQKGIGRGQATAVIDVAKARDDYYRETGIYVPICSD GGIVHDYHMTLALAMGADFLMMGRYFARFDESPTEKLRIGNNIVKEYWGEGSNRAHNWQR YDGGGVATVMKFEEGVDSYVPYAGPMKDTLDQTLSKIKATMSSCGTVDLKTLRENAKLTL VSSTSIIEGGAHDVIRKDRT >gi|228308606|gb|ACLR01000069.1| GENE 15 15363 - 16175 786 270 aa, chain + ## HITS:1 COG:TP0637 KEGG:ns NR:ns ## COG: TP0637 COG0324 # Protein_GI_number: 15639624 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Treponema pallidum # 1 250 60 306 316 134 37.0 2e-31 MDIGTGKDLDSYTTERGTIPYYLIDIVPAGQPFNLFKYVRLFDKAYHEVVAQQLKPIFVG GSGLYVEQVLQTRPMHQVPPDATLREELEILSLDDLRAILSRYPRIDRVDPSSARKCIRA IEIARYYAQHPEAYQAYQQALREAKRQKPPLIIGLRLSRQEIIRRIDQRLRSRLEEGMVT EVERLLDQQVPSEALIAYGLEYRFITFYLQGKLSYSEMEEQLATAIHQFAKRQMTWFRGM SRRGLPIHWIDGHQPVTYQRDRVLRLLKSL >gi|228308606|gb|ACLR01000069.1| GENE 16 16188 - 16820 620 210 aa, chain - ## HITS:1 COG:no KEGG:PGN_1977 NR:ns ## KEGG: PGN_1977 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 37 204 26 205 211 144 41.0 2e-33 MKCFSKLYIISLIPLLLLSTKALRGGNLSPIYNSIGEPLVQAPDTLAEEDLVGIMLPEIH VSGTPHKPLSKTERYAYWRRVRDVKKVLPIAEELSRTITETYEYAETLPTKRERRAHLAR VKKELIRDYTPRMKDLTLGQGLLLIKLVNRQTGSTGYEIVKSIYGGLTATWYNLFAKFYG GDLDVKFDPEHVEDDAVTERIIYLWRYGLL >gi|228308606|gb|ACLR01000069.1| GENE 17 16939 - 17787 1022 282 aa, chain + ## HITS:1 COG:no KEGG:DehalGT_0014 NR:ns ## KEGG: DehalGT_0014 # Name: not_defined # Def: putative lipoprotein # Organism: Dehalococcoides_GT # Pathway: not_defined # 30 278 34 261 264 78 26.0 2e-13 MTYKSILTSSLLALAILLGCGISSCTYKKGSTTIAQQELNFKDFTAINANHGIELEITQG AEYSVSVSAPENYMDDLKIEQEGETLYVSLANKGKRRLDTDNITVHITMPYISQIDLAGA AEACFLGRFETPQFTAHLSGSSSIEDLSVAADEVSIEATGASEVSGTVQATRAMVNLSGA SDLDLLANQLSQMTMQLAGSSEAEIKGAITNLQATLAGASEIDGEELTVSDLDISLAGAS SADIRNSGNLRYMLAGASELTIYGSPKVLDSQSDRSSSIEIR >gi|228308606|gb|ACLR01000069.1| GENE 18 17806 - 18177 543 123 aa, chain + ## HITS:1 COG:no KEGG:PG1707 NR:ns ## KEGG: PG1707 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 33 113 34 115 121 73 45.0 2e-12 MSSIRRFVERITGQIKSFSAEHPKRAQAILCGLIVLGMGLYTFVISDSNLGKQLRYSHRI QALTDECKRLEEAYQSDSLKIDSYKQNKASLERIAREEYRMQRPDEVVFLIKDRPDSEDS ESK >gi|228308606|gb|ACLR01000069.1| GENE 19 18221 - 18598 442 125 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469802|ref|ZP_04054760.1| ## NR: gi|228469802|ref|ZP_04054760.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 125 1 125 125 195 100.0 9e-49 MSQPSTSRQRAINICYKLGLILLFGSLLLHLFYPSVLFGYLLMTGALLYTISQALVDKRG VDLRTKRLRGMALLAGILFVSGSYLFIVEQSYWRLVLMIASVLLLYSNTVLLYHKPQAPK DNQAD >gi|228308606|gb|ACLR01000069.1| GENE 20 18608 - 19633 1140 341 aa, chain + ## HITS:1 COG:L25787 KEGG:ns NR:ns ## COG: L25787 COG0564 # Protein_GI_number: 15672980 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Lactococcus lactis # 63 314 59 298 301 72 25.0 1e-12 MPPRPTKNIRKAPQRERVYSFTATEPGALLELLFQLLPQLSRTTVKQFLRNRCVLLAGVT TTQFDAPVAIGDSIEIYNIGTAEELQHPLIEELYRDEQFIVLHKRPGIPTISVGGASKSS LFQVVTHHLKKVDPNEKIFLLNRLDRDTEGIIIVARDRQLQQDLLAEWHSFVLFNSFEAV VLGALDTSSGELTTRPTKDKKRGSDKRRTSTSSGRDKKPASFRASYEVLSTGPYITRLSL SLLTRNNSIRSTLASIGHPLLGDHRANDSIAPDLSKYLALRATELAIFHPIKRQKMLFTI DKPLVNLDRIAQTRLTAAQKEALVIEETVSHQDKKQLNKHL >gi|228308606|gb|ACLR01000069.1| GENE 21 19655 - 21727 2510 690 aa, chain + ## HITS:1 COG:STM4323 KEGG:ns NR:ns ## COG: STM4323 COG4232 # Protein_GI_number: 16767572 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol:disulfide interchange protein # Organism: Salmonella typhimurium LT2 # 227 598 161 508 567 105 28.0 3e-22 MKQRITYLFLLFSILFATGSTLVAQGGGMVNPVKFSQQITDDGKKVVTVSITARINSGWH LYDQNLPKGGPVPLSFHTDKLVGAKALGGFKANKKPKSYIDDIFNIEVREFEGSVTFSQQ LEITDAKAFAYEGYLKGQACQDNCVQVDYDFNFSSKQLSKALLALTASSPSEEATATEAE TDSTETTALAATDSLSAGATSESISESSYWAPVVDQLKAYGDRNQKQSTAGLLYIFIYGF LGGLIALITPCVWPMIPMTVSFFLKRTKSRKAAIRDAMIYGLSIIVIYVALGLIITAIFG ASALNNLATNAVFNIIFFLILVLFAVSFFGAFELVLPAKWTNKMDSKADSTTGLLSIFFM AFTLVLVSFSCTGPIIGTLLVQAGTSGQIVAPAIGMIGFALALALPFSLFAIFPNMLQNM PKSGGWLNSVKVVLGFLELALSLKFLSVADLAYGWGILDRETFLALWIIIFALLGFYLLG KIRLPHDTPLEKVSVSRLFLAIISLAFSVYMIPGLWGAPLKSITAFAPPLYTQDFNLYDG EVHAQFDDFDAGMRYAQETGKPVLLDFSGYGCVNCREMENSVWIDPTVKGLLEDDYILIT LMVDDKTALPKVIEVEENGSIKKLRTVGDKWSYLQRSKFAANAQPYYIAIDPAGNPLSPS YAHNTDISKYIDFLKGGLKEYEARQKQSAQ >gi|228308606|gb|ACLR01000069.1| GENE 22 21895 - 22395 650 166 aa, chain + ## HITS:1 COG:ECs0715 KEGG:ns NR:ns ## COG: ECs0715 COG0716 # Protein_GI_number: 15829969 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Escherichia coli O157:H7 # 1 165 1 166 176 141 40.0 5e-34 MKKTGLYFGSSTGHVEGIADKVAQLLGIDAADVHNVANATPESAMEYDLLILGSSTWGYG DLQDDWEGFLPKLAKQDLSGKQFAVFGCGDSSSYSDTFCDAMAEIAEQVKAAGATLIGQI PADGYSYDATRCEEDGQLIGCCLDEDNESDETDDRLDTWVQAIKKA >gi|228308606|gb|ACLR01000069.1| GENE 23 22450 - 22809 355 119 aa, chain + ## HITS:1 COG:no KEGG:BF2668 NR:ns ## KEGG: BF2668 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 10 110 16 113 120 100 47.0 1e-20 MSTEWVMLSDKVYEFQKGIRPLFLCTVSREVAPLLMRRLERAGIAYHLEEISSVSPRVNL FFGKELCIAIISEMVRGRSLTMLSPEEDFILGTLLGYDTCQQCERYQRRKQSARQVVAS >gi|228308606|gb|ACLR01000069.1| GENE 24 23109 - 23363 188 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 27 83 17 73 91 64 59.0 2e-09 MWLKPRSTALESHLTATPASPLTAISPEEIVKLQGANENSPRNREIKVRKNEMKVRKKDF KVPKNLFVPHWIFRKLHRGIVRFP >gi|228308606|gb|ACLR01000069.1| GENE 25 23788 - 24894 1188 368 aa, chain + ## HITS:1 COG:Cj1269c_2 KEGG:ns NR:ns ## COG: Cj1269c_2 COG0860 # Protein_GI_number: 15792593 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Campylobacter jejuni # 31 251 106 325 329 121 36.0 2e-27 MKSLVKLALAILLATIVCPLGLLAQRKAYTVVIDAGHGGHDAGACAFGRREKDINLAVAL LTRKYIEQAHPEIKVYMTRSTDVFVGLRERANFANRKKADLFISIHTNSAQSPSASGTET YVLGLRRANDNLAVSKRENQVILLEKDYKETYEGFDPNSTESYIIFEFMQNVHLTSSINI ASEVQKSFVKLGRGNRSVRQGPFLVIRETAMPSILIELGFITNKAESDYLVSQSGREQLA QGIADGFSRYYKKYIRVTSPKKQKGQKETTESASDEGATAQQSTTTSDSKEYYRIQIASS RQPLETSDPYFRNVTDVQREQRGKLYIYTAEQCNSLSEARQAQQRLAKRYPDCYIVRYRK GVRDKEIY >gi|228308606|gb|ACLR01000069.1| GENE 26 24911 - 25807 1042 298 aa, chain + ## HITS:1 COG:no KEGG:PGN_1304 NR:ns ## KEGG: PGN_1304 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 9 298 5 292 292 189 36.0 1e-46 MPQNRLTRQTVKIGFFTLLAILILYLGITYLKGLSIAGLSKTYYVSMNDVTGVNVATRVF VNGYKVGSVRKIEYDYAHNGKAVLTLTLDPKVQLPQGTTVQVAQTLLSGAIVNLLLPALE TGAYLHAKDTIPMSTERSAMSLEQLQSEFVPRISATLSRMDSVLLQANTILSNPNIEPTL ADVRQSAQHINASSAQLQRSLSSLPKIMERIDHTSANVESFASRLDSLRLQETISNLEST SRELKSFTQRLNQSNGTVGRLLNEDGLYNRIDSVTTSLDALIRDIKANPKKYVKLSLF >gi|228308606|gb|ACLR01000069.1| GENE 27 25822 - 26019 350 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469809|ref|ZP_04054767.1| ## NR: gi|228469809|ref|ZP_04054767.1| hypothetical protein PORUE0001_0028 [Porphyromonas uenonis 60-3] # 1 65 1 65 65 71 100.0 2e-11 MPRNKKKPLNWLDKTLFVLMLLVIVGMIVALSVADGAKLYVLLGGGGLLVLNLLFVLYFA RRNRL >gi|228308606|gb|ACLR01000069.1| GENE 28 26035 - 26565 687 176 aa, chain + ## HITS:1 COG:FN0712 KEGG:ns NR:ns ## COG: FN0712 COG2059 # Protein_GI_number: 19704047 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 5 176 9 180 186 127 38.0 1e-29 MLWRLFITFVRIGGFTFGGGYAMLSLIQHDVVEKNHWMTDEEFIDLFAVSQSLPGVFAVN MSIFIGYRLKGYLGAVTCAIGATLPSFIIILLLAMFYQEVNDNVWVQRVMYGIRPAVVAM IAIPVITTWRAMKGTWRMVWIPILSALLVWLMGVSPVWIILGSALGGIIYSVMRRK >gi|228308606|gb|ACLR01000069.1| GENE 29 26578 - 27180 760 200 aa, chain + ## HITS:1 COG:FN0713 KEGG:ns NR:ns ## COG: FN0713 COG2059 # Protein_GI_number: 19704048 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 1 198 1 173 176 113 41.0 2e-25 MIYLQLFWVYIQIGLFGFGGGYAMLSLIQNEVVYKYHWLTNQQFTDIVAVSQVTPGPIGI NSATYIGYSVTGGSILGSLLATTAVMLPSFFLCLIISRSFQAFRSNRYVDAAFLGIRPAS VGLIAAAALMLMIQPGLWTLLTLPAGTPITVDNIIVTENFIDYRSFLIFAVTGLVLYKKW VHPILLIVLAGIAGVLLYSL >gi|228308606|gb|ACLR01000069.1| GENE 30 27177 - 28526 720 449 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 15 435 5 423 451 281 36 3e-75 MITPRLHPLVGKRAAFYTLGCRLNYAETSTIARQLATVGVERISDEHHHTTEVLPDICIV NSCSVTDTADKKCRSLINRLHREYPEALIVVTGCYAQLQGEQIAQMPGVDLVVGSGRKSE IVALLTELCQKRTQPKAATPHVTARRELQHFEPSVSSDDRTRHFLKVQDGCNYYCTYCTI PAARGVSRNGSIASLVAQAERVAELGGREIILTGVNIGDFGRSTGETLLELLHRLTQVAG IARYRIGSIEPELLTPEIIQFVAETAQFMPHFHIPLQSGSDHVLRLMRRHYDTELFAERL KLIYELIPDAFVGIDVIAGMRGELPEHHAETLAFLKTQPWSQLHVFPYSERKGTKALEIK PAVPATEKKLRTKELLALSSERHNAFCAPFAGSVRPVLWEETRHGEMMEGFTDNYIRVTQ PYDPELVGAITPAQLAHWSVRRQTFTTKP >gi|228308606|gb|ACLR01000069.1| GENE 31 28535 - 29554 902 339 aa, chain + ## HITS:1 COG:CAC2327_1 KEGG:ns NR:ns ## COG: CAC2327_1 COG1216 # Protein_GI_number: 15895594 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Clostridium acetobutylicum # 4 266 5 266 378 122 28.0 8e-28 MNRPDLAIVVLNWNGRKLLEEYIPPLVAHTPPEMADLVVIDNGSTDDSLAYLQEAFPQVK LVRLSENYGFAGGYNQGLRQLNYSYYCLLNSDVRVSPHWCDRPLALLREGLAAVQPKLRS DRQPEAFEYAGAAGGELDRWGYPYCRGRLFDTVELDHGQYDEECEILWATGACYFVSSEA FWQVGGFDESFFAHMEEIDLSWRLWLAGGRLRYTPDSVVYHLGGATLEMGSPRKSYLNFR NNLRMLYKNLPTRHARRHILLCRLPLDLLAALTFLVKGQPQHASAVLRAVRDFYRTRRQL ALSAEQPWYQPTATPPIARYSLLWQYHLRRRHTYDQLPS >gi|228308606|gb|ACLR01000069.1| GENE 32 29737 - 30108 504 123 aa, chain - ## HITS:1 COG:VC1574 KEGG:ns NR:ns ## COG: VC1574 COG3169 # Protein_GI_number: 15641582 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 1 121 12 122 127 93 49.0 7e-20 MNPWLTVALLVVSNVFMTFAWYGHIKLEQMRVITDHTPLYLVILLSWCLALFEYSFQIPA NRYGYVGNGGAFSLMQLKVIQEVVSITVFTLFSVIFFRGEPLQWNHLAAFACLVLAVYFV FLK >gi|228308606|gb|ACLR01000069.1| GENE 33 30463 - 30948 794 161 aa, chain + ## HITS:1 COG:CC1730 KEGG:ns NR:ns ## COG: CC1730 COG0386 # Protein_GI_number: 16125974 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Caulobacter vibrioides # 3 161 4 160 160 184 53.0 5e-47 MATIYDFTVLTSQGEPLDLASLRGKVLLIVNTASKCGYTPQLAGLEELYKQYHDKGLVLL GFPCNQFGGQDPGTDEEIRNFCQVNYGVTFPIMQKVEVNGPHAHPLFKLLKEETSQDSDL PVKPIQWNFNKFLISRDGTEITRYGSAKLPKNLAKDIEALL >gi|228308606|gb|ACLR01000069.1| GENE 34 30964 - 31419 576 151 aa, chain + ## HITS:1 COG:TM0865 KEGG:ns NR:ns ## COG: TM0865 COG1585 # Protein_GI_number: 15643628 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Membrane protein implicated in regulation of membrane protease activity # Organism: Thermotoga maritima # 8 146 6 140 140 84 39.0 8e-17 MLDSPIYFWLIAGLLLLLVELLTPGFVVACFGIGALLAILPAALGASITWQVITFCIGSI LALLLLRPMVRRLSRNKESARTGVEALYGRTARVTECIDASRETGRIAVDGDNWRARTVA PDMVIPRGEMVRIVSNDSIVMIVEPITQSAE >gi|228308606|gb|ACLR01000069.1| GENE 35 31442 - 32458 1411 338 aa, chain + ## HITS:1 COG:MT1533.2 KEGG:ns NR:ns ## COG: MT1533.2 COG0330 # Protein_GI_number: 15840949 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Mycobacterium tuberculosis CDC1551 # 3 317 6 307 381 248 42.0 1e-65 MEASLIVLGVLVLLVIYIIAKGLVIVQQSETMIVERLGRYLKTLPSGINLIIPFIDKPRP MVWRITASSSKGGTLVRFINTDRIDLRENVYDFARQSVITRDNVVTEINAVLYFQIVEPL KAVYEISNLPVAIEMLTQTSLRNVIGEMDLDETLTSRDTINSKLRDILDEATNKWGVKVN RVELQDINPPRDIRDAMEKQMRAERDKRAQVLTAEGQKEAMIRESEGRMTESVNHAEGEK KAQILAAEADARATILRAEAEAEAIERITSAVASTGSNPTQYLIAMRYLDTLEKIGRNSS DKTLFLPYEATGILSALGGIKEVSASEVGNLLTKVGKH >gi|228308606|gb|ACLR01000069.1| GENE 36 32511 - 33386 625 291 aa, chain + ## HITS:1 COG:HI0977 KEGG:ns NR:ns ## COG: HI0977 COG2184 # Protein_GI_number: 16272915 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Haemophilus influenzae # 108 288 6 186 191 213 59.0 3e-55 MSKISIRFFNDRDVRAVWDETESKWWFSVLDIIGVLNDQDDYNKNRNYWKYLKTKLKREE SEVVSATNQLKLLAPDGKMRLTDTLDDKGVVALAQNFPNDRAMRFVQWFVGGEETIDGHS RSKAYTLFESDLLDSIEVGTVQGLQQIHAYLFGGLYDFAGQIRQVNIAKGGFQFAMAQYL PDTLTSIERMPEQTWEQIIDKYVEMNIAHPFREGNGRATRIWLDLMLKKHLGLCVDWSQV DKYTYLEAMRASVADATSLRGLLHAALTDKVNDRATFMKGIDYSYYYEQES >gi|228308606|gb|ACLR01000069.1| GENE 37 33519 - 35837 2040 772 aa, chain + ## HITS:1 COG:BH0336 KEGG:ns NR:ns ## COG: BH0336 COG1203 # Protein_GI_number: 15612899 # Func_class: R General function prediction only # Function: Predicted helicases # Organism: Bacillus halodurans # 7 760 3 787 800 289 30.0 1e-77 MSNTEQIAHVRALEDGSYETQPLLDHLHGVAELAQSYAERITDYPELGEIGYLLGLLHDL GKYQEGFQRYIRQQSGLDPTLNGWRTPHSPAGARYAYDLKQAGGSQQLLKILSLCIGAHH RGLYNDSEWRGQVVSSSDTKRAVANLVKGLRPEALQLEELLHKASLDKVATMWDKLDEED YQLLVRMLFSCLVDADFLDTERFMSPDKSLVRQSAKASLEQMRAQLEEYVSHFNREGRIN EARAAFLDQCRNHGRTAKRKIYSLTLPTGAGKTVSSMMWALEHAIAQGCERIIYVIPYTS IITQTAQTFRDIFGADQVLEHHSDVDAKERPDEALEYTKLMTENWDVPLVVTTNVQFFES LYAHRVSRCRKLHNICNSVVVFDEVQMFPPRLLNPILRVVESLHYTFRVEPLFCTATLPV FDKDILADSKRIGHEFFFLEERIQEVVPYDAERFAPFDKVRYHWDPLRLSTEELAERLGE HESFLCIVNSRKDAARLYAALQAQDKSGEGLIHLSRRMCSAHIQKRIEEIRHRLKAGEPV RVVSTPLVEAGVDLDFPVVYRAMAGLDSVMQAAGRCNREGRMAEPGEVYIFRLTDGTDIP GEMSWAQGALEDLLDRLTEQGAPQKAEIERYYQAFYNDVDCFDNKKTKEKDKRVSPLLWD VDDDRCEGLRFEYETASENFRYIENQDTPIVIPYGDAGKAIIKKLQSNLPLTRQEYRQMN RLTVGLKRKDCLTLEGNTSVNESGIAYLTNDKLYSSETGIQIIDQTSTFLKV >gi|228308606|gb|ACLR01000069.1| GENE 38 35842 - 36558 900 238 aa, chain + ## HITS:1 COG:no KEGG:Cvib_1301 NR:ns ## KEGG: Cvib_1301 # Name: not_defined # Def: CRISPR-associated RAMP Csd5d family protein # Organism: P.vibrioformis # Pathway: not_defined # 3 236 2 234 236 249 54.0 9e-65 MEEYIDKEYCLRVRGPFACFTRPEMKVERVSYDVITPSAARAIFQAIYWKPAIRWEITKI EVLAPIKRFTIKRNEVASIMSKGSTGINVSEDRRQRASYILRDVDYRIYAKMVYIPVRNR SASCQKHYNEEYSEAERKAENPRKYQEIFERRAKAGQCFTMPYLGCREFTCAFEYVDLEH GETSLEPKPIPESRDLSIMLYDMDFERDRKNPPAMFYHAQMTDGVILVPPMDSNEILR >gi|228308606|gb|ACLR01000069.1| GENE 39 36555 - 38402 1644 615 aa, chain + ## HITS:1 COG:no KEGG:Neut_1016 NR:ns ## KEGG: Neut_1016 # Name: not_defined # Def: CRISPR-associated RAMP Csd1 family protein # Organism: N.eutropha # Pathway: not_defined # 1 611 1 566 566 315 35.0 5e-84 MILQALYNYYEAMRKAHRIATPGLEVKPIRWVIVIREDGSFVRLKDLKDPSDKKSKGQDY LVPAGLKRSGKCPPAQPFWDNRKYILGYEESAEGVSPCTDRLEDFKRVMAEIAEHYPDNA SFKAVCRFYDHYLGAETPLPEEAQTERILASDWMTFQLQGDTELLATQDDAYDLAAQAYS TEDNLGRCLITGEEKPLAAFHARIVAPGSQAGATIASFNDPAYLSYGKKQGENAPISKYA SFAHTTALNELLRNEQTRYTLGDISYVFWNSDLDDPSINETFRTVTFEGVRDDDTQEQSD TDDEQPKRKGKSKKKAPNPTQDTYKVLEQFKTIRGNRGQGEHWEDARQFYVLGLTAGGRI TIKYWQQGTVSEIFDRVYQHLVDMNIISWDGFVDEENPPLRSLYGIVKSVSTPSKSSTFA TNLVQSIVESILSGNPYPMTLQQACVNRITQERTVSELRAAILKGCINRKARIYKQLKEL DMALDKQNDNIAYLAGRLFAVLEQIQQASLGKGVNATIRDRFYASASTRPNMVMGRLIAL SNHHLSKLRKEKPGLAVNLEKLLGEIFALIPAEAPTFPATFSLDEQSLFAVGYYHQKVDT YRKEETTNPTEETEQ >gi|228308606|gb|ACLR01000069.1| GENE 40 38414 - 39277 1438 287 aa, chain + ## HITS:1 COG:SPy1564 KEGG:ns NR:ns ## COG: SPy1564 COG3649 # Protein_GI_number: 15675456 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 1 249 1 240 282 150 36.0 3e-36 MLQNRYDFILLFDVKDGNPNGDPDGGNLPRVDPETGEGLVTDVCIKRKVRNYIQMATDQG IFVRENSVLNDSINEAVEEATGKDAKTKNASDRDKARALMCQKYYDIRAFGAVLSTGNNA GQVRGPIQLTFARSIDPIFPHEHTITRMAATDAKEQKANEEADDKGGNRTMGRKATVPYG LYKMYGFVTPHFAEDTGFTEDDLKLFWEALQNMFDLDHSAARGLMSLQKLIIFKHESPLG NASAHKLFERVTVARREGLTGPARDFSDYTVQIDRNGLQGVEIVELV >gi|228308606|gb|ACLR01000069.1| GENE 41 39353 - 40030 603 225 aa, chain + ## HITS:1 COG:SPy1563 KEGG:ns NR:ns ## COG: SPy1563 COG1468 # Protein_GI_number: 15675455 # Func_class: L Replication, recombination and repair # Function: RecB family exonuclease # Organism: Streptococcus pyogenes M1 GAS # 4 217 3 213 224 152 40.0 3e-37 MRRYSDEELLTISEIQHYCFCPRQWQLITLEQLWQDNHLTALGQILHKRVDQPELSARVG DTITMRRVPLVSYSLGLYGLSDAVELTPLRDQCLSPFRHPKYPGAWQATPVEYKRGKPKT HLADKLQLCAQAIALEEMYQVSIPFGALYYGETRHRLQVEMDDALRTACSEVARKMHEAF AQRTPIPAHYTRQCRSCSLLDECMPRIASHRSAKSYLKHHDILTL >gi|228308606|gb|ACLR01000069.1| GENE 42 40027 - 41058 740 343 aa, chain + ## HITS:1 COG:BH0341 KEGG:ns NR:ns ## COG: BH0341 COG1518 # Protein_GI_number: 15612904 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Bacillus halodurans # 1 340 1 341 343 332 48.0 6e-91 MRKLLNTLYILTPNVYLLKDGTNVVARIDGEETFRIPIHNLEGIITFSYMGASPGLMQLC VQEGVKLTFLTPTGRYIGSLEGPTRGNVLLRRTQYRIADDEPAAAHFAALFISAKIANQR SVLSRYVRDYHPTEGVEATFQEALSQLKTLQKSLAYKRDRMTVMGVEGLAAQQYFALFHH LIRRPEFTFEGRSRRPPLDETNALLSFFYTILAHEVTAALETVGLDPYVGFLHTDRPGRA SLALDLMEELRAYLVDRFVLTVINKRQVAPSDFITQGENGYILRDEPRKELLAAWQQRKR EEIMHPFLQERIPIGLLPYAQALLLARCLRGDLDDYPVFLIQS >gi|228308606|gb|ACLR01000069.1| GENE 43 41058 - 41348 311 96 aa, chain + ## HITS:1 COG:SPy1561 KEGG:ns NR:ns ## COG: SPy1561 COG1343 # Protein_GI_number: 15675453 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Streptococcus pyogenes M1 GAS # 1 96 1 97 97 113 55.0 1e-25 MYLLVTYDVNTASPDGAKRLRQVAKICQNYGQRVQNSVFECLVSPAQRVELEAALTDTIN LSSDSLRIYHLGTNYQSKITTIGKTKGVDPEGVLLI Prediction of potential genes in microbial genomes Time: Fri May 27 09:13:33 2011 Seq name: gi|228308601|gb|ACLR01000070.1| Porphyromonas uenonis 60-3 deg1118640599680, whole genome shotgun sequence Length of sequence - 628 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 144 134 ## gi|228471121|ref|ZP_04055945.1| ATP synthase subunit E - Prom 258 - 317 4.3 2 2 Tu 1 . - CDS 341 - 550 210 ## Predicted protein(s) >gi|228308601|gb|ACLR01000070.1| GENE 1 3 - 144 134 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471121|ref|ZP_04055945.1| ## NR: gi|228471121|ref|ZP_04055945.1| ATP synthase subunit E [Porphyromonas uenonis 60-3] # 1 47 1 47 197 70 100.0 2e-11 MDSKIKELTDKIYHEGVEKGNQEAAQILAKAKQQSDDMIATAQAEAQ >gi|228308601|gb|ACLR01000070.1| GENE 2 341 - 550 210 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKKLQFHAHENPVSSVGNRKSLPRNGQILRNFEIFLPKFHFILPNFYIQPPWGMFVFQR FICRFLREN Prediction of potential genes in microbial genomes Time: Fri May 27 09:13:42 2011 Seq name: gi|228308597|gb|ACLR01000071.1| Porphyromonas uenonis 60-3 deg1118640599505, whole genome shotgun sequence Length of sequence - 522 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 284 398 ## BF0119 hypothetical protein 2 1 Op 2 . + CDS 256 - 459 252 ## gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 Predicted protein(s) >gi|228308597|gb|ACLR01000071.1| GENE 1 3 - 284 398 93 aa, chain + ## HITS:1 COG:no KEGG:BF0119 NR:ns ## KEGG: BF0119 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 93 115 207 207 108 59.0 4e-23 TDLQEEKYYNRLISTNTSQVLTVDSISCDFNTYPYEAVVYGTQTIYRKSNVTERSLVTAC SLLNTVRSDRNPQGFLITKFRVINNETRRTTPR >gi|228308597|gb|ACLR01000071.1| GENE 2 256 - 459 252 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469432|ref|ZP_04054443.1| ## NR: gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 [Porphyromonas uenonis 60-3] # 1 67 1 67 67 126 100.0 5e-28 MKQDVPPLDSVGTSSTQNKVGWVKKQTDRLKAWCDKLTPEERKRLTFISMGVYLAVFLLV ITISIFK Prediction of potential genes in microbial genomes Time: Fri May 27 09:13:48 2011 Seq name: gi|228308595|gb|ACLR01000072.1| Porphyromonas uenonis 60-3 deg1118640599544, whole genome shotgun sequence Length of sequence - 530 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 528 522 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308595|gb|ACLR01000072.1| GENE 1 3 - 528 522 175 aa, chain - ## HITS:1 COG:Rv2167c KEGG:ns NR:ns ## COG: Rv2167c COG2801 # Protein_GI_number: 15609304 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis H37Rv # 37 151 175 290 346 88 39.0 6e-18 RSRRRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSLTMD AYSRIITGFDLQPTLSTEGPYNALKQTVDFYKKHGFDLKGLIFHSDRGCQYVSKQMTDYE ASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALY Prediction of potential genes in microbial genomes Time: Fri May 27 09:13:49 2011 Seq name: gi|228308592|gb|ACLR01000073.1| Porphyromonas uenonis 60-3 deg1118640599614, whole genome shotgun sequence Length of sequence - 522 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 233 180 ## gi|228469819|ref|ZP_04054773.1| transposase - Prom 278 - 337 1.6 Predicted protein(s) >gi|228308592|gb|ACLR01000073.1| GENE 1 2 - 233 180 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469819|ref|ZP_04054773.1| ## NR: gi|228469819|ref|ZP_04054773.1| transposase [Porphyromonas uenonis 60-3] # 1 77 1 77 78 152 100.0 6e-36 MKYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFCCETTGGYDRA Prediction of potential genes in microbial genomes Time: Fri May 27 09:13:54 2011 Seq name: gi|228308588|gb|ACLR01000074.1| Porphyromonas uenonis 60-3 deg1118640599736, whole genome shotgun sequence Length of sequence - 701 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 234 242 ## gi|228469846|ref|ZP_04054786.1| transposase - Term 342 - 368 -0.6 2 2 Tu 1 . - CDS 501 - 695 315 ## PG2003 deoxyguanosinetriphosphate triphosphohydrolase Predicted protein(s) >gi|228308588|gb|ACLR01000074.1| GENE 1 1 - 234 242 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469846|ref|ZP_04054786.1| ## NR: gi|228469846|ref|ZP_04054786.1| transposase [Porphyromonas uenonis 60-3] # 1 77 87 163 163 160 100.0 3e-38 GGYSNRRLKGILTQAARSAITHNPTFKQYYQRMKAQGKPYGVILNNVNNKLLHILFSLVA HDCDFELDHEAKRALRA >gi|228308588|gb|ACLR01000074.1| GENE 2 501 - 695 315 64 aa, chain - ## HITS:1 COG:no KEGG:PG2003 NR:ns ## KEGG: PG2003 # Name: dgt # Def: deoxyguanosinetriphosphate triphosphohydrolase # Organism: P.gingivalis # Pathway: Purine metabolism [PATH:pgi00230] # 1 61 386 446 447 100 75.0 2e-20 MHSLLHPDDAYSRTLLSLVSSQYNLHEASIYGKLQCTLDYISGMTDPYALDLYRRITGMS LPAI Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:01 2011 Seq name: gi|228308585|gb|ACLR01000075.1| Porphyromonas uenonis 60-3 deg1118640599746, whole genome shotgun sequence Length of sequence - 531 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:02 2011 Seq name: gi|228308582|gb|ACLR01000076.1| Porphyromonas uenonis 60-3 deg1118640599648, whole genome shotgun sequence Length of sequence - 522 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 521 226 ## BVU_2095 transposase Predicted protein(s) >gi|228308582|gb|ACLR01000076.1| GENE 1 2 - 521 226 173 aa, chain - ## HITS:1 COG:no KEGG:BVU_2095 NR:ns ## KEGG: BVU_2095 # Name: not_defined # Def: transposase # Organism: B.vulgatus # Pathway: not_defined # 4 165 146 308 407 110 34.0 2e-23 TLLQGYLGYQYGKDDLPLSAVQKDELSSYELYLKGEKNYTHNTAIKVLRFLRKAMERAVE EDLLMRVPFPKVVLRMQPTDRGFLDDSDLERLRSVELSNPKLLLVRDAFLFSCYTGLSYA DISRLVRDNIISMHGQSWVVLRRKKTGVLSTIPLMSVAVHILTPYLAQATSTE Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:05 2011 Seq name: gi|228308580|gb|ACLR01000077.1| Porphyromonas uenonis 60-3 deg1118640599699, whole genome shotgun sequence Length of sequence - 513 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 74 - 512 467 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308580|gb|ACLR01000077.1| GENE 1 74 - 512 467 146 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 131 85 209 227 85 39.0 3e-17 MDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTD YEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTA RPHRALNKKTPMQMLIPDYPNPLTTQ Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:05 2011 Seq name: gi|228308578|gb|ACLR01000078.1| Porphyromonas uenonis 60-3 deg1118640599721, whole genome shotgun sequence Length of sequence - 1208 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 782 - 1090 93 ## Predicted protein(s) >gi|228308578|gb|ACLR01000078.1| GENE 1 782 - 1090 93 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMKTANGNTRTNHLDQPTFPFVNTSLHSLLTRNIRIYRSLKPITPLKGYLLHSKAVLERI MECPKLTRNDSWMVFLGIGISPSLHQKRGGAIVPLPCQCKLF Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:11 2011 Seq name: gi|228308577|gb|ACLR01000079.1| Porphyromonas uenonis 60-3 deg1118640599772, whole genome shotgun sequence Length of sequence - 714 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:12 2011 Seq name: gi|228308572|gb|ACLR01000080.1| Porphyromonas uenonis 60-3 ctg1118640599588, whole genome shotgun sequence Length of sequence - 3054 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 330 - 373 -0.4 1 1 Tu 1 . - CDS 548 - 1060 115 ## gi|238926921|ref|ZP_04658681.1| hypothetical protein HMPREF0908_0821 2 2 Tu 1 . - CDS 1234 - 2409 1527 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid Predicted protein(s) >gi|228308572|gb|ACLR01000080.1| GENE 1 548 - 1060 115 170 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|238926921|ref|ZP_04658681.1| ## NR: gi|238926921|ref|ZP_04658681.1| hypothetical protein HMPREF0908_0821 [Selenomonas flueggei ATCC 43531] # 45 139 1 94 97 62 44.0 8e-09 MEAVIVFVPTANRSPLPTHAPRVGCDPHDEEPMWVYLLFQFTHPVWGATRGQSILPVSGS VFQFTHPVWGATVCREYVVAVDLVSIHAPRVGCDEVWSSGWLSLMRFNSRTPCGVRPRNL VLLVRAMVFQFTHPVWGATTTGLGMVSRPTRFNSRTPCGVRQVRSVVPPS >gi|228308572|gb|ACLR01000080.1| GENE 2 1234 - 2409 1527 391 aa, chain - ## HITS:1 COG:rfbX KEGG:ns NR:ns ## COG: rfbX COG2244 # Protein_GI_number: 16129977 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Escherichia coli K12 # 23 370 4 356 415 78 21.0 2e-14 MNQSPLPAPKHLLQRLCAMVRGNRLVLENFLSLGLINVLNSSFHLIIYPILIHRVGAEAY GAYVYAFSVITYFVTLVTYGLDMIGTRYLARYDKEGDLAGKSDITSQILSSRLYLLLLSF ILFLPIVLWVGPLADYRALLWASFLSVVACVIMPNWYFIGIQRTRIYLYIQIATKVLLAV AIILWVLTPEHMTRYVLLASASNILSAGIAFGYILWREKLSLRLISLRKSLALLREATPL FLSYLVMTVKSAGLNLVIGSLFGMTSLTGYDFSMKIVSVVMYITKQLNVALFPSVSTSYT TERIHRILRGELLMGIACMGALMLAAKPIIWIMGNGPIEDLILPVFLLMTALIPIWLISG FFIELVLTANGRNREVFINQLLSLAVIALVP Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:20 2011 Seq name: gi|228308569|gb|ACLR01000081.1| Porphyromonas uenonis 60-3 deg1118640599586, whole genome shotgun sequence Length of sequence - 504 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 26 - 503 178 ## PG1474 conjugative transposon protein TraO Predicted protein(s) >gi|228308569|gb|ACLR01000081.1| GENE 1 26 - 503 178 159 aa, chain + ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 1 158 32 189 192 179 60.0 2e-44 MSWSALFRLVKGERLCAKESFGVGLAFAHYFKRANYAFLLAEYEQQGLTYRSYNVPLRDA LLHFGYMHPILSDRGKNIFGYLGLSALCGYEELNEDKRLLPDGATLLDRSRFTYGGAIHS SVELFLTDNLLFVLKAQGRLLFGSDLHRFRPAISAGFKF Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:23 2011 Seq name: gi|228308566|gb|ACLR01000082.1| Porphyromonas uenonis 60-3 deg1118640599677, whole genome shotgun sequence Length of sequence - 536 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 288 450 ## COG0450 Peroxiredoxin - Prom 374 - 433 4.6 Predicted protein(s) >gi|228308566|gb|ACLR01000082.1| GENE 1 3 - 288 450 95 aa, chain - ## HITS:1 COG:STM0608 KEGG:ns NR:ns ## COG: STM0608 COG0450 # Protein_GI_number: 16763985 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 8 95 3 89 187 117 59.0 7e-27 MQMTMQPIINSNLPEFKVPAYTKSKGFHEVSNEDLKGRWSVLFFYPGDFTFVCPTELADL ADNYAEFQQIGVDIYSVSTDSHFVHKAWQDASEAV Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:24 2011 Seq name: gi|228308564|gb|ACLR01000083.1| Porphyromonas uenonis 60-3 deg1118640599480, whole genome shotgun sequence Length of sequence - 524 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 174 92 ## gi|228471159|ref|ZP_04055976.1| hypothetical protein PORUE0001_1962 2 2 Tu 1 . + CDS 225 - 413 84 ## + Term 431 - 464 -0.9 Predicted protein(s) >gi|228308564|gb|ACLR01000083.1| GENE 1 1 - 174 92 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471159|ref|ZP_04055976.1| ## NR: gi|228471159|ref|ZP_04055976.1| hypothetical protein PORUE0001_1962 [Porphyromonas uenonis 60-3] # 7 57 1 51 51 87 100.0 3e-16 TAAAQAAWRYALSATLASHSTPMELPLSHFEEYIDESNQLRHSYGRRKALMEELDKI >gi|228308564|gb|ACLR01000083.1| GENE 2 225 - 413 84 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSPLAFSSRGNRVSPRRSEQILPNFDFVLPNFHFILPNFHFSAPWETFVFSLAMWQFLRE DR Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:33 2011 Seq name: gi|228308563|gb|ACLR01000084.1| Porphyromonas uenonis 60-3 deg1118640599546, whole genome shotgun sequence Length of sequence - 504 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 503 483 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308563|gb|ACLR01000084.1| GENE 1 2 - 503 483 167 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 24 167 65 203 227 93 39.0 2e-19 NHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSLTMDAYSRIITGFDLQPTLS TEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTDYEASLGIVTSVTQTGNPL HNAMAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTARPHRA Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:34 2011 Seq name: gi|228308562|gb|ACLR01000085.1| Porphyromonas uenonis 60-3 deg1118640599652, whole genome shotgun sequence Length of sequence - 538 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 206 98 ## gi|228469649|ref|ZP_04054625.1| hypothetical protein PORUE0001_2003 - Prom 441 - 500 3.1 Predicted protein(s) >gi|228308562|gb|ACLR01000085.1| GENE 1 2 - 206 98 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469649|ref|ZP_04054625.1| ## NR: gi|228469649|ref|ZP_04054625.1| hypothetical protein PORUE0001_2003 [Porphyromonas uenonis 60-3] # 1 63 1 63 63 120 100.0 3e-26 MFVMKRLDLDVKVRYYTRHNKSYQGDSPIMIRLYVQGERASLGQVGYSVRPCYLVNNKVV ATAPKSEE Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:39 2011 Seq name: gi|228308558|gb|ACLR01000086.1| Porphyromonas uenonis 60-3 deg1118640599688, whole genome shotgun sequence Length of sequence - 562 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 117 - 561 135 ## PG1710 ISPg5, transposase Orf2 Predicted protein(s) >gi|228308558|gb|ACLR01000086.1| GENE 1 117 - 561 135 148 aa, chain + ## HITS:1 COG:no KEGG:PG1710 NR:ns ## KEGG: PG1710 # Name: not_defined # Def: ISPg5, transposase Orf2 # Organism: P.gingivalis # Pathway: not_defined # 23 148 2 131 312 71 35.0 1e-11 MRQLEQAKVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRKRKRPPQTTKGVVNHGFQDHL NTTPKYIATDHCRLTVSDITYVKCLGGF Prediction of potential genes in microbial genomes Time: Fri May 27 09:14:42 2011 Seq name: gi|228308555|gb|ACLR01000087.1| Porphyromonas uenonis 60-3 deg1118640599612, whole genome shotgun sequence Length of sequence - 588 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 96 - 587 673 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|228308555|gb|ACLR01000087.1| GENE 1 96 - 587 673 163 aa, chain - ## HITS:1 COG:NMA0772 KEGG:ns NR:ns ## COG: NMA0772 COG3547 # Protein_GI_number: 15793747 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Neisseria meningitidis Z2491 # 1 152 164 314 321 66 29.0 2e-11 KAIDLLTKSIKECEYRMLEIIKEDEEMYRHYLHLISCKGVGLVTSVMLIVFTDNFKGWSA KKMASYCGIAPFYESSGSSVFHKSNTGGYSNRRLKGILTQAARSAITHNPTFKQYYQRMK AQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRALRA Prediction of potential genes in microbial genomes Time: Fri May 27 09:15:04 2011 Seq name: gi|228308482|gb|ACLR01000088.1| Porphyromonas uenonis 60-3 ctg1118640599724, whole genome shotgun sequence Length of sequence - 82366 bp Number of predicted genes - 78, with homology - 73 Number of transcription units - 24, operones - 15 average op.length - 4.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 3 - 62 1.6 1 1 Op 1 . + CDS 134 - 1813 1890 ## COG2985 Predicted permease 2 1 Op 2 . + CDS 1817 - 2620 235 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 3 2 Op 1 7/0.000 + CDS 2791 - 4662 2203 ## COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit 4 2 Op 2 . + CDS 4687 - 6843 2642 ## COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit + Term 6899 - 6956 10.1 - Term 6891 - 6940 10.6 5 3 Op 1 . - CDS 6989 - 8140 989 ## COG0763 Lipid A disaccharide synthetase 6 3 Op 2 . - CDS 8162 - 8926 786 ## COG0496 Predicted acid phosphatase 7 3 Op 3 . - CDS 8959 - 9504 657 ## PGN_0208 hypothetical protein 8 3 Op 4 . - CDS 9494 - 11047 2131 ## COG0423 Glycyl-tRNA synthetase (class II) 9 3 Op 5 . - CDS 11132 - 11323 169 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Prom 12420 - 12479 1.6 10 4 Op 1 . + CDS 12540 - 12935 61 ## COG0270 Site-specific DNA methylase 11 4 Op 2 . + CDS 12932 - 14767 922 ## COG1401 GTPase subunit of restriction endonuclease 12 4 Op 3 . + CDS 14794 - 16455 1087 ## PRU_0359 hypothetical protein 13 5 Tu 1 . + CDS 16638 - 17090 529 ## BF2756 putative lipoprotein + Term 17107 - 17149 7.1 14 6 Tu 1 . - CDS 17099 - 17284 84 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 - Prom 17332 - 17391 3.7 15 7 Op 1 . - CDS 17406 - 18143 296 ## COG0802 Predicted ATPase or kinase 16 7 Op 2 . - CDS 18157 - 19701 1832 ## COG0784 FOG: CheY-like receiver 17 7 Op 3 . - CDS 19713 - 20792 720 ## COG0270 Site-specific DNA methylase 18 7 Op 4 . - CDS 20773 - 21639 283 ## Clos_1856 type II site-specific deoxyribonuclease (EC:3.1.21.4) 19 7 Op 5 14/0.000 - CDS 21654 - 22736 1095 ## COG0451 Nucleoside-diphosphate-sugar epimerases 20 7 Op 6 . - CDS 22733 - 23809 1376 ## COG1089 GDP-D-mannose dehydratase 21 8 Op 1 . + CDS 23906 - 24151 122 ## 22 8 Op 2 . + CDS 24201 - 26117 1657 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 23 8 Op 3 . + CDS 26145 - 27953 1428 ## COG0322 Nuclease subunit of the excinuclease complex 24 8 Op 4 . + CDS 27966 - 28418 489 ## COG1490 D-Tyr-tRNAtyr deacylase 25 8 Op 5 . + CDS 28418 - 28792 448 ## COG1694 Predicted pyrophosphatase 26 8 Op 6 . + CDS 28817 - 29683 1331 ## COG0274 Deoxyribose-phosphate aldolase 27 8 Op 7 . + CDS 29702 - 29923 65 ## 28 8 Op 8 . + CDS 29833 - 30621 537 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 29 8 Op 9 . + CDS 30614 - 30988 451 ## gi|228469861|ref|ZP_04054800.1| hypothetical protein PORUE0001_1211 + Prom 31024 - 31083 2.9 30 9 Tu 1 . + CDS 31174 - 32586 1772 ## COG4108 Peptide chain release factor RF-3 + Term 32680 - 32721 -0.2 + Prom 32792 - 32851 3.7 31 10 Op 1 . + CDS 32877 - 35261 2105 ## COG4206 Outer membrane cobalamin receptor protein 32 10 Op 2 . + CDS 35301 - 36512 1476 ## Ctha_1000 conserved hypothetical lipoprotein 33 10 Op 3 . + CDS 36520 - 36924 474 ## gi|228469849|ref|ZP_04054788.1| conserved hypothetical protein + Term 36970 - 37014 12.4 34 11 Tu 1 . + CDS 37277 - 40213 2929 ## gi|228469896|ref|ZP_04054835.1| leucine Rich Repeat domain protein + Term 40276 - 40328 14.8 - Term 40266 - 40314 9.3 35 12 Op 1 . - CDS 40473 - 41429 849 ## gi|228469865|ref|ZP_04054804.1| putative membrane protein 36 12 Op 2 . - CDS 41434 - 42585 1035 ## COG0438 Glycosyltransferase 37 12 Op 3 . - CDS 42601 - 43101 530 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 38 12 Op 4 . - CDS 43109 - 43669 492 ## COG0193 Peptidyl-tRNA hydrolase 39 12 Op 5 . - CDS 43726 - 44445 687 ## COG0791 Cell wall-associated hydrolases (invasion-associated proteins) - Prom 44640 - 44699 3.2 + Prom 44430 - 44489 1.8 40 13 Tu 1 . + CDS 44656 - 44796 66 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 41 14 Op 1 . - CDS 44990 - 45184 75 ## 42 14 Op 2 . - CDS 45200 - 46879 1736 ## COG4886 Leucine-rich repeat (LRR) protein - Prom 46904 - 46963 3.7 43 15 Op 1 22/0.000 - CDS 46972 - 48087 1391 ## COG0842 ABC-type multidrug transport system, permease component 44 15 Op 2 1/0.000 - CDS 48105 - 49241 1332 ## COG0842 ABC-type multidrug transport system, permease component 45 15 Op 3 . - CDS 49356 - 49913 643 ## COG0693 Putative intracellular protease/amidase 46 15 Op 4 . - CDS 49974 - 50759 1017 ## PGN_0674 hypothetical protein 47 15 Op 5 . - CDS 50752 - 51159 487 ## BF3738 putative tansport related protein 48 15 Op 6 . - CDS 51234 - 51908 855 ## COG0811 Biopolymer transport proteins 49 15 Op 7 . - CDS 51932 - 52660 695 ## COG0854 Pyridoxal phosphate biosynthesis protein 50 15 Op 8 . - CDS 52724 - 52957 250 ## - Prom 53025 - 53084 1.6 + Prom 52989 - 53048 4.0 51 16 Tu 1 . + CDS 53079 - 54293 1492 ## BDI_2593 hypothetical protein + Term 54472 - 54530 18.5 - Term 54463 - 54514 10.2 52 17 Op 1 . - CDS 54684 - 56033 1370 ## COG0534 Na+-driven multidrug efflux pump 53 17 Op 2 . - CDS 56035 - 56937 769 ## COG1091 dTDP-4-dehydrorhamnose reductase 54 17 Op 3 . - CDS 56934 - 57512 473 ## gi|228469913|ref|ZP_04054852.1| hypothetical protein PORUE0001_1233 55 17 Op 4 . - CDS 57523 - 58731 1156 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component 56 17 Op 5 . - CDS 58754 - 59095 542 ## COG0858 Ribosome-binding factor A - Prom 59157 - 59216 3.3 57 18 Tu 1 . - CDS 59235 - 59393 102 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 - Prom 59425 - 59484 3.0 - Term 59604 - 59654 15.2 58 19 Tu 1 . - CDS 59698 - 61863 2840 ## LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat) - Prom 62005 - 62064 1.6 - Term 62119 - 62161 9.3 59 20 Op 1 6/0.000 - CDS 62218 - 63576 1869 ## COG1012 NAD-dependent aldehyde dehydrogenases 60 20 Op 2 . - CDS 63618 - 64733 1597 ## COG1454 Alcohol dehydrogenase, class IV 61 20 Op 3 . - CDS 64749 - 66035 1637 ## COG0427 Acetyl-CoA hydrolase - Term 66104 - 66138 0.4 62 21 Op 1 . - CDS 66148 - 66441 297 ## PGN_0726 hypothetical protein 63 21 Op 2 . - CDS 66454 - 67929 1935 ## COG2368 Aromatic ring hydroxylase - Prom 68155 - 68214 2.1 + TRNA 68644 - 68717 58.6 # Arg CCG 0 0 + Prom 68644 - 68703 78.1 64 22 Op 1 . + CDS 68855 - 69091 170 ## 65 22 Op 2 . + CDS 69241 - 70236 1477 ## COG0180 Tryptophanyl-tRNA synthetase 66 22 Op 3 . + CDS 70282 - 70755 699 ## CHU_3583 hypothetical protein 67 22 Op 4 . + CDS 70775 - 71254 638 ## COG1576 Uncharacterized conserved protein 68 22 Op 5 . + CDS 71268 - 71621 477 ## PGN_0746 hypothetical protein 69 22 Op 6 . + CDS 71624 - 71848 317 ## gi|228469917|ref|ZP_04054856.1| conserved hypothetical protein 70 22 Op 7 . + CDS 71870 - 72805 678 ## COG1482 Phosphomannose isomerase 71 22 Op 8 . + CDS 72802 - 73413 480 ## PGN_0688 hypothetical protein 72 22 Op 9 . + CDS 73431 - 74804 1371 ## BDI_0958 hypothetical protein 73 22 Op 10 . + CDS 74791 - 76050 873 ## COG2755 Lysophospholipase L1 and related esterases 74 22 Op 11 . + CDS 75995 - 77581 2063 ## COG1696 Predicted membrane protein involved in D-alanine export + Term 77667 - 77703 -0.5 + Prom 77677 - 77736 3.2 75 23 Op 1 . + CDS 77963 - 80341 1752 ## BDI_2766 lysyl endopeptidase precursor 76 23 Op 2 11/0.000 + CDS 80380 - 81222 496 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase 77 23 Op 3 . + CDS 81234 - 81791 398 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase + Term 81823 - 81874 14.3 78 24 Tu 1 . + CDS 81967 - 82366 502 ## PGN_1736 putative glycogen synthase Predicted protein(s) >gi|228308482|gb|ACLR01000088.1| GENE 1 134 - 1813 1890 559 aa, chain + ## HITS:1 COG:HI0035 KEGG:ns NR:ns ## COG: HI0035 COG2985 # Protein_GI_number: 16272010 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Haemophilus influenzae # 20 558 7 548 551 306 33.0 9e-83 MDSLRAFFNELFVIPSVPQSIIVISLVSLVGLLLARIRIARISLGVTFVFFVGILLSYWG ITLEARTLDFGMNFGLILFIYALGLQVGPAFFPSLKKGGIQDNIDSLLLVVVNIALVVGL FYVSELPMSEWVGILSGATTNTPALAAAQSSLPSVGPDGQSVLAEMALACAITYPFGVVG VILALYVLAPLAKKRAKSQSDEEEHAAFFSEYEVKNMGVVGKTISEISRVAESSFVISRI WRDGKALSPDSSTQLLEGDRLLVVSDEREVPKLELFFGKKVEKDWNRSDIDWDSVDQSLV SRRLVLTRKEYNGVRLSALHLRNDYGVNVTRIDRAGIELLTSPDLHLQLGDRMTVVGTKE ATDAVAAKIGNEIKDLDTPNLLGLFIGLFISVFVGMIPFYIPGVSMPIRLGLAGGGIIIG ILMGAFGPRMHVTTYITNSASLLIRQLGLILYLGCLGLSSGAGFFDILLSTRGLVWLGYG ALLTVFPILLIGWYMLRRKRGDYATMCGVMCGSMANPMALEVVGDRLSGSKHTVAYATVY PLGMFVRIILTQLLILLFV >gi|228308482|gb|ACLR01000088.1| GENE 2 1817 - 2620 235 267 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 23 242 9 227 309 95 28 1e-18 MTETIDTTEALSPDRHKGETGLLRTEHLVKRYRSRTVVNDVSIELRQGEIVGLLGPNGAG KTTTFYMTVGLVVPNGGKIYLNEQDITKLPVYQRARLGIGYLAQEASVFRKLSVEDNIKA VLEMTPLTPEQQQERLEMLIAEFGLHKVRTNQGNRLSGGERRRVEIARCLAIDPKFIMLD EPFAGVDPIAVQDIQSIVAKLKQRNIGILITDHNVNETLSITDRAYLLFEGKVLFQGTAE QLADNALVREKYLGRDFVLRRKSFVDL >gi|228308482|gb|ACLR01000088.1| GENE 3 2791 - 4662 2203 623 aa, chain + ## HITS:1 COG:BH2956_1 KEGG:ns NR:ns ## COG: BH2956_1 COG1884 # Protein_GI_number: 15615518 # Func_class: I Lipid transport and metabolism # Function: Methylmalonyl-CoA mutase, N-terminal domain/subunit # Organism: Bacillus halodurans # 8 444 9 454 525 228 31.0 2e-59 MANKRERLFGDFPPVSKEQWLEKVTVDLKGASFDKRLVWRTPEGFSLQPMYRREDIAQYA SRLALPGEYPYVRSTKLDNEWLVRQDIKVSDPAEANAKALDILNKGVTSLGFKISKTILS AETLETLFKGIDLTAVEINLSTCISRTVELAELFVAYVQKHKVNGAAVRGAIEYNPFKME LMKGMVNAQRYDILEQLYNIAKPIPQIRLYIVEASMLSNAGAGIVKELAYALAWGAEVLD QMVARGHKVEEIARRIKFHFGISSNYFLEMAKFRAARWLWAEIIGAHGDQYKSDAAKICQ HATTSQWNMTIYDAYVNLLRSQTETMSAALGGVDSITVLPFNITYEESNDFSERIARNQQ LLLSEESHFDKVVDPAAGSYYIETLTNVIAEQAWQLFGEISASEGGFESFVTTGALQRDL QETNTQRHGAVAKRKETLLGTNEFPNFTETAHEKLATPAVITSGCGCSAGEKQEGLQPLN FDRGANEFETLRLTTERGKQPVVFMLTIGNLAMRLARSQFSGNFFGCAGYKLIDNLGFET VQEGIDAAVAAKADIVVLCSSDDEYETFAPEAFRLLDGRAQFVVAGNPACTEQLQALGIE HFIHVRSNVLETLQHFNKIFGLA >gi|228308482|gb|ACLR01000088.1| GENE 4 4687 - 6843 2642 718 aa, chain + ## HITS:1 COG:BH2955_1 KEGG:ns NR:ns ## COG: BH2955_1 COG1884 # Protein_GI_number: 15615517 # Func_class: I Lipid transport and metabolism # Function: Methylmalonyl-CoA mutase, N-terminal domain/subunit # Organism: Bacillus halodurans # 10 589 5 582 582 832 68.0 0 MTKPLYKEIDLSHSQFGRTDATKWGKEHALEANWTTPEQIKVKPVYTADDIEGLEHLDYV SGLPPFLRGPYSLMYPFRPWTIRQYAGFSTAEESNAFYRRNLASGQKGLSVAFDLPTHRG YDADHPRVVGDVGKAGVSICSLEDMKVLFDGIPLAKMSVSMTMNGAVLPVLAFYINAGLE QGAKLEEMAGTIQNDILKEFMVRNTYIYPPEFSMKIIADIFEYTSQKMPKFNSISISGYH MQEAGATADIEIAFTIADGIEYLRAGINAGIPVDKFAPRLSFFWGIGVNHFMEIAKMRAA RMLWAKVVKSFGAENPKSLMLRTHCQTSGWSLTEQDPYNNVGRTCIEAMAAALGHTQSLH TNALDEAIALPTDFSARIARNTQIYIQKETQVCRSIDPWGGSYYIESLTDEIAHRAWEHI QEVEKIGGMAKAIETGLPKMRIEEAAARTQARIDSNQQVIIGINKYRLEHEDPIEILEID NTSVRQSQIARLKELRANRDEQAVQAALKEITECVRTKQGNLLELAVKAAGLRASLGEIS DACEAVVGRYSAVIRTISGVYSKESGHDKQLEYAKQLAAEFAEREGRQPRIMIAKMGQDG HDRGAKVVATGYADCGFDVDMGPLFQTPEESARQAVENDVNILGVSSLAAGHKTLIPQVI EELRKLGRPDIIVTAGGVIPAQDYDFLYKAGVAAIFGPGTPVAYSAAKCLEILLGKEA >gi|228308482|gb|ACLR01000088.1| GENE 5 6989 - 8140 989 383 aa, chain - ## HITS:1 COG:FN0597 KEGG:ns NR:ns ## COG: FN0597 COG0763 # Protein_GI_number: 19703932 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Fusobacterium nucleatum # 1 332 1 322 356 150 30.0 5e-36 MKYLLIAGEASGDEHGARLIASLKAVDTEAAFAFIGGDKMAQQAGVAPLYHYREIAVMGF TSVLRSMRKISHAAQLLREEMTSNPPDVVIPIDYGGFNLRYTLPMAHRHGVPVVYYIPPK VWASRRRRIKQLRSYTDLCLTILPFEADYLSQRGVLARYVGNPSIQSVGELLASNAKLCD TVRPYIALLPGSREAEIARNLPIMCQAIDLLPAPWRAVIAGAPSIDRAHYTPYINERIEL VTNETLPLLAGASAALVTSGTATLETALIGTPQVVAYRLPAGRLARWAFDHLLPIRYFSL VNLIAECPVVEELLGDKVTPRRLAQALSPLLEREGSAYQLQQAHYDEIRLRLDPSRVASQ VAAETIYHALTTQWEPTRWTTED >gi|228308482|gb|ACLR01000088.1| GENE 6 8162 - 8926 786 254 aa, chain - ## HITS:1 COG:VC0531 KEGG:ns NR:ns ## COG: VC0531 COG0496 # Protein_GI_number: 15640553 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Vibrio cholerae # 1 250 14 256 263 179 39.0 3e-45 MKILLTNDDGVHAQGIRELAETLAQIATVTVVAPTEPRSGASSQITSRTPLRITLMEESE QLPYQLYSCSGTPVDCVKLALNTIFATTLPDLVVSGINHGRNDGICAIYSGTAGAAIEAA IARIPAVAFSLADHSDKCDFSEVCAFAKQFIPQVMEHGLPRTTMLNVNFPKAPAKGIKWA PQGTGRFVNEYMRSETPHGTPVYWMQGDQVDPDHRTGTDHYWLVEGYATIAPLQIDMTDH PFLERATKEWPLQL >gi|228308482|gb|ACLR01000088.1| GENE 7 8959 - 9504 657 181 aa, chain - ## HITS:1 COG:no KEGG:PGN_0208 NR:ns ## KEGG: PGN_0208 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 175 4 184 185 163 45.0 2e-39 MKYSISLKASLVMLLSLLLLASCEDPIDATTQWRINNESSFKEYASKEDYKKASIPGSSA YVYMKWLAHGEGKEYPIETSRIKCHYEMRMLVGNKVVDGNYGSERSAEFTINRGPKKQLV EGARIGLQQMVVGDEAEIIIPWYLAYGERRTEEISPYSALKFRVKLEEIIPETQRAAEAH E >gi|228308482|gb|ACLR01000088.1| GENE 8 9494 - 11047 2131 517 aa, chain - ## HITS:1 COG:SA1394 KEGG:ns NR:ns ## COG: SA1394 COG0423 # Protein_GI_number: 15927145 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Staphylococcus aureus N315 # 11 504 8 461 463 500 51.0 1e-141 MASQEDLFKKIVSHCKEYGFVFPSSDIYDGLSAVYDYGQNGVELKNNIKRYWWEAMTRLH PNVVGIDSSIFMHPDIWRASGHIDAFNDPLIDNKDSKKRYRADVLIEDQIAKIEGKAEKE IDKARKRFGDSFDESLYRTTNPRVKGYLEQAEALRQRMAKALNDNDLEELRQIIIDEKIV CPISGTTNWTEVRQFNLMFATEVGSTADGASTIYLRPETAQGIFVNYLNVQKTGRMKLPF GIAQIGKAFRNEIVARQFIFRMREFEQMEMQYFVQPGTELEWFEYWKKLRLHWHYALGFP QSDYRYHDHEKLAHYANAATDIEYLMPFGYKEVEGIHSRTDFDLSRHEEFSGKKLRYYDP ETKESYIPYVVETSIGVDRMFLSVLCGSYKEEQTESGETRVVLSLPPALAPVKLAVLPLV RKDGLDEKAHEVVRLLHLDFTCQYDEKDSIGKRYRRQDAIGTPYCITVDHQTLEDNTVTL RDRDTMQQERIAIAELHDLIAQRTSINTLLKKIEDEI >gi|228308482|gb|ACLR01000088.1| GENE 9 11132 - 11323 169 63 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 47 43 89 91 63 70.0 3e-09 MKLRKKQIKVRKNFFMPRWGIFGFYRGICDFLGGVVSGALKGIGVPRNHRSHQNHQNNRT SNL >gi|228308482|gb|ACLR01000088.1| GENE 10 12540 - 12935 61 131 aa, chain + ## HITS:1 COG:NMA1500 KEGG:ns NR:ns ## COG: NMA1500 COG0270 # Protein_GI_number: 15794400 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 1 128 230 334 337 85 38.0 3e-17 MWLGHQTRKKRNRLNGKGFGYSKFTGNSVYTSTISARYWKDGSEILIDQSNRGLNPRMLT PVEAGRLQGYRVIGSGWEHTESASNLAYNESDPEFRIVVSKKEAYRQFGNSVAIPVIKRL SQEIIKQLIRQ >gi|228308482|gb|ACLR01000088.1| GENE 11 12932 - 14767 922 611 aa, chain + ## HITS:1 COG:BS_ydiS KEGG:ns NR:ns ## COG: BS_ydiS COG1401 # Protein_GI_number: 16077677 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Bacillus subtilis # 332 563 107 334 343 130 36.0 7e-30 MKDLSILEAELAQKVSDYKSVLQADCPLPAEFKKLVPKVDNYTIKYLRHSFIVSGRLDIY LPNQLWYLAAICVPLYKELSLYKQALHDEVDISSYKGNKAKAEKVVNNLGYDGQERELLV KFLSDYEWWRGGKSIDRGDYFYSPILSVCNLVNVSQSYVAEMCKYLASKDEATDLLNQAL LGLHGTLSGSDKLLQTIYFGAPGSGKSYIVKETMRKAGVPEENIFRTTFHPDSDYASFVG CYKPVVRSKDDTNLTKEELLQCFETLRSETESYPVDKFAARYHASLQNISKPEKKWLREE LQNTAGISFDPYAQMNTAIAVGDYLAEQGLLNSDETITYDFSPQVFTNAYVRAWEVHSES ESEPKPVYLIIEEINRGNCAQIFGDLFQLLDRDGDGVSEYKIKADEDLTRYLQSKLGVTH EGIKGGNLCLPSNLHIIATMNTSDQSLFPMDSAFKRRWNWKYVPINYSPDIDSGKYTITI GCNKYRWVDFLEKVNERILEVTDSEDKQMGNFFIKDFVGEDEFKSKVMFYLWHEVCKDEF HTKNNFFRYTTKEEQEEQEFSFNDLYKDCSTDLLNGFMNYLEVPPVTQEKTSTAEASTSA ATETTSTETTA >gi|228308482|gb|ACLR01000088.1| GENE 12 14794 - 16455 1087 553 aa, chain + ## HITS:1 COG:no KEGG:PRU_0359 NR:ns ## KEGG: PRU_0359 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 491 1 508 772 320 39.0 8e-86 MKILFEEYRYKPEELPSLEGIDPIELKDGDVKLPYVGYYYDVASAETIFILPKVFIVDNL AFKRYDPKRLCKSQSEKEPLSADDQAFLFRLSAWLYQAIALFNERHPSNEITSQRSLAGV VGHKGKDGVTLLDHVLSLLRFNREHQSLFTYIATIKHTGQHRIHWTKTIRTTTPLVNGKT PYYLECRTKDKTIDYDEELICLFYSTLDYLKQSYHFVVQRHLNYKTEKPHRIANMIECGK GTRYLRKIRGKYFKDELVQLWNLLYAFYERAEEVAQKRVPNERLLVRNFNIVFEDMIDCL IGDSELPKGLKEQKDGKIIDHIYRDKSLVDDDDIYFIGDSKYYKEGNSFDENSRYKQITY AKNVIQYNIDLFNRQEESGYLRYRDELTEGYNPTPNFFIRGFIDPEDLSYADSKLTKEDK EHYSYHFENRLFDRDTLLVLTYDINFLYVLSAYVQSRGYSASVDRFLRDLFRQDIIAAYK DKYEFYQIELEGISKEEFVASNFKLLIGKMFQTKEGKLILALEKENEESKLIKTLSEKTI PRQEIDLKYLGSH >gi|228308482|gb|ACLR01000088.1| GENE 13 16638 - 17090 529 150 aa, chain + ## HITS:1 COG:no KEGG:BF2756 NR:ns ## KEGG: BF2756 # Name: not_defined # Def: putative lipoprotein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 36 140 170 275 278 90 42.0 2e-17 MKRILFMALLLTCSAALFASCGPTKDWHLSEQCSKFLNERYANARILEVDYDKGMVEVEI RHDKKDKEVLFTNSCEWVSTSWDVARRNVPAVVMKALQKKYPNARIDDIDFVEMPRGSYY CFEIERRGQQDEYVYITPQGVITEVRAYHK >gi|228308482|gb|ACLR01000088.1| GENE 14 17099 - 17284 84 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 24 60 1 37 58 65 94.0 1e-09 MRLLHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSRQSCTQDCETVDFCNSLM C >gi|228308482|gb|ACLR01000088.1| GENE 15 17406 - 18143 296 245 aa, chain - ## HITS:1 COG:AGc43_1 KEGG:ns NR:ns ## COG: AGc43_1 COG0802 # Protein_GI_number: 15887385 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 125 10 126 148 72 34.0 6e-13 MRLTLQSLADLPRIAQEVHTRLADYPVIALQGDLGAGKTTLVHELCRLDGASEEEVVNSP TFAIVNVYTTQSDDTIYHIDCYRLESLADADQIGLAEYIRSGARCYIEWPDVIAPLSPRT PPSSTSRRSPTDPASSPSSPSKLALTSARLTRARGGSAAKVLHTPRELLLYCCQRSRARL NDSPPPRMAYIPKEQRSSRYTLSYYYGVKSSELTKGLSEKTCTHFARFGYISETTCTRFG VFGYI >gi|228308482|gb|ACLR01000088.1| GENE 16 18157 - 19701 1832 514 aa, chain - ## HITS:1 COG:mlr6691 KEGG:ns NR:ns ## COG: mlr6691 COG0784 # Protein_GI_number: 13475585 # Func_class: T Signal transduction mechanisms # Function: FOG: CheY-like receiver # Organism: Mesorhizobium loti # 5 122 7 126 130 76 37.0 1e-13 MSAIQILWVDDEIDLLRPHIIFLEQHGYEVTPCVSGADALDLLEERSYDLVFLDEQMPGL SGLETLARIAPLYPYLPVVMVTKSEEEHLMNEAISRQIADYLIKPVNPHQLLLSLKKVLH REQIVTEATQQNYIQAFRELSLRINSAGTIDEWMSIHKEISKWVMQVDNYLPDMAETLQS QRDEANRLFAKYITKEYEGWIQDPKCAPLMSHTLMRDKVFPLLDRGERIFLILIDNFRWD QWLAVQEMLSGLFTFDDGMYTAILPTATQYARNAIFSGLMPLEIAKTFPELWVDEESEEG KNLNEEPMIASLLKRYRKPYSFAYRKVYETSFGERLLGQLNELQDNPLNVIVLNFVDMLS HARTESKMIRELASSEAAYRSLTQSWFRHSTTYRLFEQVAQMGAKIILTTDHGSVRVRKP VQIIGNRNTSTNLRYKLGQSLSFNAKEVYAPRKPKDIGLPVNHLTDGYVFCYEQNFFAYP NNYNYYVNYYRDTLQHGGISMEEMLVPCITLTPR >gi|228308482|gb|ACLR01000088.1| GENE 17 19713 - 20792 720 359 aa, chain - ## HITS:1 COG:BH3508 KEGG:ns NR:ns ## COG: BH3508 COG0270 # Protein_GI_number: 15616070 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Bacillus halodurans # 2 331 5 311 326 228 40.0 1e-59 MSMTLISLFSGAGGMDLGFHKAGFTTILANEYDKTICPTFKHNFPDVPLLEGDIRKIPER LFPRHIDGIIGGPPCQSWSEAGALKGIEDARGQLFFDYIRILKYTQPKFFVAENVSGMLS KRHQEAVQNFINLFDQAGYNVFVELLNAYDYEVPEDRKRVFYIGFRKDLDIKEFEFPVPI PKRLTLRDAIWDLRDTAISARDSNKSNEDACLVPNHEYFTGSYSPIYMSRNRVRSWDEPG FTVQASGRQCQLHPQAPKMQKIETNKHIFDPLNEKLYRRMTVREVARVQSFPDDFLFIYD QVNDGYKMVGNAVPVNLAYHVALSIKQALKQAGLEIHKSEPFVEQQSQRSMTQSTLFTQ >gi|228308482|gb|ACLR01000088.1| GENE 18 20773 - 21639 283 288 aa, chain - ## HITS:1 COG:no KEGG:Clos_1856 NR:ns ## KEGG: Clos_1856 # Name: not_defined # Def: type II site-specific deoxyribonuclease (EC:3.1.21.4) # Organism: A.oremlandii # Pathway: not_defined # 3 281 4 282 282 298 53.0 2e-79 MANIIDAICNITSLTSLELTSLSNSKNRANSMGESLEMFVKDLFAGSYNTSSSSKRTKLL ANTFSYLGNQNNPPDAILLNGDALEIKKIESVSSFLALNSSYPKRQLHSSDPMLSTACRN CEEWTTKDLIYSVGFVKKNHLRALAMVYGDLYCADAETYTKIKRHIKEGVEQIEGIEFAQ TKELGKVNRVDPLGITYLRVRGMWGIENPFTLFQDLYKIKEEDCFDLIAVVEENKYLSFD NRYKLESLSKSLKGLSIKDAKVREPNNPALLKNVKLITYSISHEYDAD >gi|228308482|gb|ACLR01000088.1| GENE 19 21654 - 22736 1095 360 aa, chain - ## HITS:1 COG:wcaG KEGG:ns NR:ns ## COG: wcaG COG0451 # Protein_GI_number: 16129992 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli K12 # 7 360 3 315 321 314 46.0 2e-85 MKQLTPESRVYVAGHRGLVGSAILRQLQARGYQQLITRTHQELDLLDAVAVEQFMREERP DYIFLAAAHVGGIMANQTYRADFIMNNLGIQQNVLTSALRNGVEGLLFLGSSCIYPRLAP QPMREDALLTSPLEYTNEPYAIAKIAGMKMCESMNLQYGTNYLSVMPTNLYGYGDNFDLV NSHVLPAMIRKLHLAGALLRGDLAALRRDVAQRPLAGLTEQSSLEEFTAELARYGITPTS LQLWGTGSALREFMWSDDLAEACITIAERVSFAELYPAGEQEIRNTHINIGSGEEVSIRT LATLVAEATHYEGRIEWDSTKPDGTPRKLLDLTRLTSLGYTATTPLAVGIPRLYDWYCQH >gi|228308482|gb|ACLR01000088.1| GENE 20 22733 - 23809 1376 358 aa, chain - ## HITS:1 COG:BMEI1413 KEGG:ns NR:ns ## COG: BMEI1413 COG1089 # Protein_GI_number: 17987696 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: GDP-D-mannose dehydratase # Organism: Brucella melitensis # 3 353 2 347 362 447 64.0 1e-125 MSRPIALITGITGQDGSYLAELLLSKGYEVHGTLRRASYFNTARIEHLYLDDWVRDQGQR RKIELHWADMTDSSSLIRIIQEVRPTEIYNLAAQSHVKVSFDVPEYTGDVTAIGTLRLLE AVRILGMSQSVRIYQASTSELYGHVAETPQNELTPFRPCSPYACAKLYAYWIIRNYRESY GMFAVNGILFNHESERRGENFVTRKITMAAARIKLGLQDKLYLGNLNALRDWGYAPDYVY CMWLMLQNEKPEDFVIATGEQHSVREFATLAFRYVGIDLEWRGEGLHEEGVDRATGRVLV AVDESFFRPAEVETLLGDPTKARQLLGWNPRMTPFEELIKRMVESDLELFAQEERKKL >gi|228308482|gb|ACLR01000088.1| GENE 21 23906 - 24151 122 81 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTADHRHSAHTLEEIENLFGGIWDSPRRNKKIHRNFDLLLPKFHFILPNFYFPAPWRILI CSLKIPNFLGRNVLAGGMYAF >gi|228308482|gb|ACLR01000088.1| GENE 22 24201 - 26117 1657 638 aa, chain + ## HITS:1 COG:PM1485 KEGG:ns NR:ns ## COG: PM1485 COG0445 # Protein_GI_number: 15603350 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Pasteurella multocida # 15 638 4 621 629 563 47.0 1e-160 MRLTCVSRGYVSTMTTHFDIIVIGAGHAGCEAACATARMGASTLLITGDMNKVAQLSCNP AMGGIAKGQIVREIDALGGYTGQLSDAATIQWRMLNRSKGPAMWSPRAQLDRMRFMELWR GQLDRTDGLDLWQDFVVDIKFGAADGKHLVVTQLGMTFTAAKVIVTAGTFLGGLMHFGRT MIPGGRISEPASHGLTECLVAAGHHADRMKTGTPARIDGRSVDWSLVEEQPGDDETGHFS FLPMQRKPLRQRSCYILYTNEACHDILRASLSDSPLYNGQIQSIGPRYCPSIETKIVNFA DRTRHQLFLEPEGEETNEYYLNGFSSSLPIDTQIRALQTIPALRHVQLYRPGYAIEYDFF DPRDLHHTLESKVVSGLYLAGQVNGTTGYEEAAGQGLLAGINAALALQKKAPLILRRDEA YIGVLIDDLVTKGVDEPYRMFTSRAEYRILLRQDNADLRLTPYAERLGLATAERLSRLEQ IKQRMAELEQLCANYSVKPESVNGYLSSLGENPLDFGTKLTTLLLRPHVSISGLIAHLND FATQVASIIGDDTEVLTRTETSIKYQGYIEREEQAAQKLHRLESLTLGDKFDYQQISALP IEAREKLSRIRPATIAQAARIPGISPSDINILLVLLGR >gi|228308482|gb|ACLR01000088.1| GENE 23 26145 - 27953 1428 602 aa, chain + ## HITS:1 COG:BH3097 KEGG:ns NR:ns ## COG: BH3097 COG0322 # Protein_GI_number: 15615659 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Bacillus halodurans # 3 594 2 589 591 355 39.0 1e-97 MNRDEIKAILPTIPQEPGCYQYRNKNGTIIYVGKAKNLRNRVSSYFNNSPKNPKTTRLVS EIRQLEYFVVNTEAEALVLENNLIKTHLPKYNILLKDDKSYPRIVITDEPFPRIFATRKE VGKGDYFGPYPNVAMAHTVIDLIHRVLQLRSCRYALTPEVVRERRVDLCLQYHIKKCGGP CQGFVSAEEYDHSVQLARRILKGEISILIEEEVEEMNRMSERLEFERAEQHRQNIEVLRR YSGKHVVAPNIREADVFAYDEDDVNGFVCMMQVRHGAVVLAHNLTFKKTVDSSRSDLLAY LIEELRQRFGSTAREVILAEPGEWESDSYRITVPQRGEKKHLLDLAQVNVSGYRWDCYKR QEKLNPEQRATRLLTTMKKDLGIDRLPRHMECFDNSNIQGTNPVAACVVFKNGKPAKSEY RKFHVKTVVGADDYRTMREIIYRRYRRMLDEGQSLPDLIIIDGGKGQLHVACDTLKELDI YDKVCVFGLAERFEELYRPGESEPLVLDRRSETLKVVCHIRDEAHRFGITFHRDSRSKQQ TKSILDEIPGIGARSKETLMRAFKTPQRVVKASRAELIETLGASKGSKLYNHLHPDENIE TT >gi|228308482|gb|ACLR01000088.1| GENE 24 27966 - 28418 489 150 aa, chain + ## HITS:1 COG:TM0730 KEGG:ns NR:ns ## COG: TM0730 COG1490 # Protein_GI_number: 15643493 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Thermotoga maritima # 1 150 1 148 149 140 48.0 8e-34 MKALLQRVTHASVSIKGDCVGSIQQGIVLLLGIGYEDGSEQIEKLCQKVCKLRIFDDEEG VMNRSLLDIGGEALVVSQFTLMANCRKGNRPSYIEAAKGEVSEPLYEQFVAKMRLLMGAD SIKTGKFGADMQVEIHNDGPVTIILDTDTL >gi|228308482|gb|ACLR01000088.1| GENE 25 28418 - 28792 448 124 aa, chain + ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 11 108 3 101 105 75 41.0 3e-14 MEATDKAKQTTLDELQQLVDEWIRTYGVRYFDPLTNMAILTEETGEVARVMARLYGEQSA KASDHLDLADELADLLWVLTCIANQCGINLQEALEKNLQKKTKRDATRHLNNSKLTAHPI DTIE >gi|228308482|gb|ACLR01000088.1| GENE 26 28817 - 29683 1331 288 aa, chain + ## HITS:1 COG:AGl76 KEGG:ns NR:ns ## COG: AGl76 COG0274 # Protein_GI_number: 15890144 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 47 287 81 329 345 169 37.0 6e-42 MHQIDKYHKAISLYEPIEGDVTAKVQAIIDKHYKECYTPEVLKLLYSCIDLTTLMGGDTD ESVTKMVAGVNDFETNHPDIPNVAAICVYPALVPTVKATLTCPDVRIASVAAGFPASQTF PEIKVAEVSMAVAEGANEVDVVLNLNRFLSEDYDGVCTEIEELKDAARGAHLKVIIESGL LADPRQIQIASILSLYSGADFIKTSTGKEYPGASLEAAYVMCQTLRKYYELHGERRGFKA SGGVRTPEDVVKYYCIVKEILGEEWLTPELFRLGASSLGKNLLKAIEG >gi|228308482|gb|ACLR01000088.1| GENE 27 29702 - 29923 65 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPRHTDEKVERGIAFLPNLLTAQPKRETKEPKSPKLAKTRNYRRCLQYRQNNLTIKAFTH HKRRLKRKFLTIF >gi|228308482|gb|ACLR01000088.1| GENE 28 29833 - 30621 537 262 aa, chain + ## HITS:1 COG:aq_1724 KEGG:ns NR:ns ## COG: aq_1724 COG0399 # Protein_GI_number: 15606803 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Aquifex aeolicus # 30 258 27 240 346 89 28.0 6e-18 MPPISTEQLNYQGVYPSQEAIKAQIPDDFLTDSGLCTGFEQAFRRLLGVERTIHLTSSPQ VALTAALRMLQMREGESLFVPAYWRKEYVDCLLAMRLRPIFVEVTSFNMAMDPLLLGKHL ERMVNAGTPLPRAIIVAHAHGIPANMELLCEVAQRYNMTIIEDCSQALGSSIDERACGTW GQLSFFSFSTGEIIQTGIAGALTWSENRSLSITAPYHSWSAQEKLSIEAWLRPYPLAPLQ AAVLLPQIAHLEEAIDKKTPHG >gi|228308482|gb|ACLR01000088.1| GENE 29 30614 - 30988 451 124 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469861|ref|ZP_04054800.1| ## NR: gi|228469861|ref|ZP_04054800.1| hypothetical protein PORUE0001_1211 [Porphyromonas uenonis 60-3] # 1 124 1 124 124 224 100.0 1e-57 MAKLYRKYLTQAFGLRYLGWPEDASHRYRPNYSSQPIHIEPTMLHFSHHELGRALQEKQF VPLLPPLESLSELPALQSYSSVVSGVAQSMAPDMLYLPNDSTLTGARTLEVVEVIRQLVY KYNS >gi|228308482|gb|ACLR01000088.1| GENE 30 31174 - 32586 1772 470 aa, chain + ## HITS:1 COG:VC0659 KEGG:ns NR:ns ## COG: VC0659 COG4108 # Protein_GI_number: 15640679 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Vibrio cholerae # 1 469 62 530 531 475 50.0 1e-134 MEIERQRGISVATSVMGFNYKDYKVNILDTPGHQDFAEDTYRTLTAVDSVIIVIDHAKGV EQQTRRLMEVCRMRHTPVIVFINKLDREGLDPFDLLDEVEQELGIVTTPMVWPIGMGDRF KGVYNIFDHELNLFTPNKQHVVEDIHHIESLDSPDLVQHIGAAAAERLAEEVEMVEGVYP KFDHDAYLAGEQAPVFFGSALNTFGVRELLDTFVRIAPSPQPVQAEEREVSPYEENFTGF VFKIHANMDPNHRSCIAFVKVCSGRFERNAYYRHTRLDKQVRFSSPTAFMANKKEVIDDA YAGDIVGLPDTGLFRIGDTLTSGEMLHFKGLPSFSPEYFKYIENADPMKQKQLIKGTDQL MGEGVAQLFVNQFNGRRIIGTVGQLQFEVIQYRLLHEYGAECRWEPLHLYKACWIESDDA EELANFKRRKAQYMALDSAGRDVYLAESSYILQMAQQDFPHIRFHFTSEF >gi|228308482|gb|ACLR01000088.1| GENE 31 32877 - 35261 2105 794 aa, chain + ## HITS:1 COG:BMEI0657 KEGG:ns NR:ns ## COG: BMEI0657 COG4206 # Protein_GI_number: 17986940 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Brucella melitensis # 123 247 14 141 599 63 30.0 2e-09 MSTYSHHSSWLGRTVYSLILVALSSTVCTLVAQSNPGRHTYSGVVLDATSQEPLIGASLW IEELHQGVATDADGAFTLSLPTKGEYHIKVSYVGYKDYTLHYSSKRASQAPQRILLSSST AELGTVFVHGKGQAQRLREIPSSITVIDTRELHGTVSSLNEVLNRSMGVKVTSTGGIGST SRMIIQGLDGKRIAIFVNGVPIGSSDQTSLDAFAVDQIDHVEVYKGIIPSWLGGEGLGGA INIILRHEEQQDHLTASYEVGSFHTHKGSLRANKYLPALGLNLSLALQGLYTDNDYTFDS PFEQGLVVRRDHDTYANYGGSLSLSLHKPWIDHLSLSLGADRTYQEIQGGVLNLQNNIQH AHTHTTSLQGALSVAKSILDGKLYLSSTSIVAYQLLNHVDTSHYCYDFAGRTFPSGSGQG EIGGMPNDSHDQLINIQEQLNLRYQLSPAHRLLGNISYRFARRDPHDELASKYTKLAVGG YPGQIHSLITGLTHEWKLWDERITNELGAKHVYFYSSVPPLGFTIYEQDDAPLTSSRSVW GGSEAISIKALPNLTLKGSTQYTMRTPRAEEIIGDGVLIYPSPKLAPERSLNFNLGVNWL CNPDDYPNCRIDLNGYYMNVRDMIKLVMESLIMKYTNFGQVRIAGVEAELCANLFPWLTI RSNITYQDARDRMRTAIGGGQNFHYNYRVPNMPYLFGNAEIRLQGDQLLLSDDHGEGFIA CEYTAPFSYGWEASKVSRLQVPRRWNFNVGVQYTLFQHYHLALEVNNLFNTRQWAEYQYP LPTRSLRAKLKVTF >gi|228308482|gb|ACLR01000088.1| GENE 32 35301 - 36512 1476 403 aa, chain + ## HITS:1 COG:no KEGG:Ctha_1000 NR:ns ## KEGG: Ctha_1000 # Name: not_defined # Def: conserved hypothetical lipoprotein # Organism: C.thalassium # Pathway: not_defined # 92 393 90 387 399 167 35.0 5e-40 MKHLSSLILTALLGLVTLSSCQKEESTPQQTQEAKFIYASQVENAFQLTPLADLAEGVQT SFDNSQTLPVGHLFLEKYGDYIYAMSGSMYGYGGEQTLRKYQMSEGKLKEVATLSFKGSP NVIEIIFASDTKAYGVTCASRGQLVIFNPSTMQEMGEIDLSPYAATDPKAEAPDKDPDAG TGIVRDGKLFLCLNQTKSMMELYDEPASVAVIDVATDKVEKVIKDARVQSLGMVGHTNAI LDEAGNIYFYSGPRSAMFGKHEGILRIKKGETDFDKEYYVSVTKADGAEPTSYGMTMTYY KGKVYFFLEKPSLVVDPNDKTFTKNKDFVPYELDLKSGKGKILPLPASSGWSANATIAYN GKIYFGIHAKDGMGFYSYDPATGQGSNKPVVTTPAGIYKIIKL >gi|228308482|gb|ACLR01000088.1| GENE 33 36520 - 36924 474 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469849|ref|ZP_04054788.1| ## NR: gi|228469849|ref|ZP_04054788.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 134 1 134 134 232 100.0 5e-60 MNRQTRTAFLWAFIPMGYIFHTLCELMPLFAGLSIATEEMTTEMLPAMTTFTGSALYLVP LVGLLCSCYGKRRWSTIVSFVLACLTLLLNICHLCTDLLPHFTWAQAAILPFVCVIAALL VIDLWKELRTSKAQ >gi|228308482|gb|ACLR01000088.1| GENE 34 37277 - 40213 2929 978 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469896|ref|ZP_04054835.1| ## NR: gi|228469896|ref|ZP_04054835.1| leucine Rich Repeat domain protein [Porphyromonas uenonis 60-3] # 1 978 1 978 978 1826 100.0 0 MKRNLLFLYSLLLALIPLGSVAQTATNDVLTFTTSKAVGETIQISLQYQGQLKVEGLESV PPSAPFELSISTVKLTAQTVTIKGQLLHLAIYNDQKITSLSAPNHTTLERLQCVNNPSLT SLNLSGCNKLNYISILGTGLKDTHLTQFIGSLPKVKEGKLNFYNAYQKATHAYWTIQDIR DANAKGWHVTTLVGHDNVELYPDEITIGVDPAVSEVLSLWIIGEGENIPLISNIEGNPVI ESGDKFTPYTVTQKSVVIGGNVKLFKVEELKNITSINLGKNRSLTHLVCTKGKVKELGLS ECSSLNLVECYGNGMRGEATTRLMSTLPDRTSAKEPGKIYFVDEASSEAQKNSYSDTDLF LAKNRGWVVYRRLSSGKFEEIKPTGTSYDQITFTTAKKVGEGFFILTNPSKPISVRGLKL LSQSESTPDKNAIVTAQDITLVGNVLSLVLADQQITAFESKDNKELRSLVISGNKLTKLD LSTFEKLESVVCFDNPFDKEGSAFTLSHLPNRTKEETPGAISFVSTAKGDLTPTYSSAAI AAANALNWKVMQRDHEGNESEIVPKINVITLVTDKAVGSEVTIEAKLADALPVKVTGLSV AEITAANAAGKFTLTAQTVTLTGDIISLSLPDGEWTKIETTTDYDNLESLAYPRNKVVAP VLNTPRLSMLDCRNNGMSEAEVKALIATLPNLSNESAQMSERKGTLLIADEANDTHANVC PDEAILAAQTKNWESTVHLGGEVRGKLFTSDKNTLRFETKLPMKSKVRFTLHYAGTLLAA DGLSTQDYLPESSDSEQECELTATFVRLVGDVDQLNITAQQVTRLALPGHKSIAKIDCAD NAITTFDLAGCAKLLFLNMTKNGLTAELVSQLIAQLPDRSAETDKGELRLFNTYKGAGET NEITAEHLKAAKAKGWRITDSKAEITEQQVATDLVLRPDSTDDTVYTLEGIRLFIPANEL PEGIYIIGGKKVIINRTK >gi|228308482|gb|ACLR01000088.1| GENE 35 40473 - 41429 849 318 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469865|ref|ZP_04054804.1| ## NR: gi|228469865|ref|ZP_04054804.1| putative membrane protein [Porphyromonas uenonis 60-3] # 1 318 1 318 318 361 100.0 3e-98 MIQRYRSSLPAPLALLTMVVVWLLCAVIQWYLLALELDSTALLVGFVSHSLALVATLGLS DRIAIQLLLITPRQRALLLLLQTMLLVPLTAFFTLSWSVWALPALLIALYLQMLCYSRPD QLQTLTLAGLMMGIAVLLYPPLLLIVPLSLSLLALMKVRRLRAYLAYLCGFIAILWLVLP TLYLWQGATPLLNLYAQLQISVETLLSPATPFEWIGWGIIALLLIIARIGLESIRGGSHV VTWYRQRALLLMTTLVLLLALVQTETMRSTLLLAVPLVIIPITPWAGQLSRYAWRYLLPL LVLLVTTLQLLLAGLVVL >gi|228308482|gb|ACLR01000088.1| GENE 36 41434 - 42585 1035 383 aa, chain - ## HITS:1 COG:SP1076 KEGG:ns NR:ns ## COG: SP1076 COG0438 # Protein_GI_number: 15900945 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 136 306 143 310 441 80 32.0 4e-15 MQHTPRILIIHRALAPYRIDLFSHLTKRYDTELYLEYGQPLEQDFNLSLQGGRIQFDYKL LAPGSRLLPNLRPELLRILRKPYDLILCSEFNLLTGMLYLLRGLSARPLPRLVSMCDDNL IMAEETLRGSSFSPKRWMLDRIDGVILCNEQAKDLYRDRYRGELSKWHYLPIVQDEQYLQ RQVALAQAETAALRSRYAIPDGRAVILYVGRLDKVKNLPRLLEAFRIVIDEDLDLQLLMV GDGPLDAELRQQATTLSLEERVTFAGKQQGSDLYAHYGLGDALILPSTYEPFGATVAEAL VLGIPVAVSEVAGSCTLIRSEREGYRLNPLDKEDIARALRHLYRLIGERRDGATRHSLLP YTFDQYMSQLDGYLDSLIAERYK >gi|228308482|gb|ACLR01000088.1| GENE 37 42601 - 43101 530 166 aa, chain - ## HITS:1 COG:Cgl2072 KEGG:ns NR:ns ## COG: Cgl2072 COG1188 # Protein_GI_number: 19553322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Corynebacterium glutamicum # 4 122 8 122 126 87 42.0 8e-18 MSRPVRIDSFLWAVRLFKTRSIAQDACRKGRVAINDVTAKPAKMVMMGDIISVRKPPVTL SFKVLQTTANRMGAKLVPEYILNVTPPEQYELLELKRMSGYVDRAQGLGRPTKRERRDLE QFLQAPVVETAPLEDWSDEPLDYDESLDYDEEQDNPSSDLLDWDNW >gi|228308482|gb|ACLR01000088.1| GENE 38 43109 - 43669 492 186 aa, chain - ## HITS:1 COG:slr0922 KEGG:ns NR:ns ## COG: slr0922 COG0193 # Protein_GI_number: 16331675 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Synechocystis # 5 186 5 188 194 135 41.0 5e-32 MNQYLIVGLGNPTEEYRGTRHNIGFRMVSHLADQQGWTWSTARHGEIASGRIKNVQLTLL KPSTYMNLSGTAVRYWMRELKVPIENILICLDDLALPFGTLRMKPGGSAGGHNGLKHITE LLGTDRYPRLRFGIGHDYPRGKQIEYVLAQFPEGELADMPRLLERTDEMIQSFCLVGVER TMNSFN >gi|228308482|gb|ACLR01000088.1| GENE 39 43726 - 44445 687 239 aa, chain - ## HITS:1 COG:BH3007 KEGG:ns NR:ns ## COG: BH3007 COG0791 # Protein_GI_number: 15615569 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell wall-associated hydrolases (invasion-associated proteins) # Organism: Bacillus halodurans # 62 187 215 335 336 86 43.0 4e-17 MSYKPRSIRLLLSTFLLALLLSQCAAKSPSGMTSKRPILKRPPIQRVVGSKAQTAHEELV ADLIDTGKELLGKPYGYRGNLPWRMDCSGFVSYVYSRYGITVPRGSATQAGYVKKIKREE ILPGDLLFFKGRNRGSGRVGHVAMVIDIVDGDPVMMHSTNSRGIVIERLGRSAYFSSRYL SAGRVPEMNDLIEKGTLMVPEPKLSPIAPNNNNKVNPVEIDRENLLPEISVGGPIQWHR >gi|228308482|gb|ACLR01000088.1| GENE 40 44656 - 44796 66 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 45 43 87 91 73 82.0 3e-12 MKLRKKQIKVRKNFFIPPWRIFVFYRGNFDFLGGVVSGSSKSVGVP >gi|228308482|gb|ACLR01000088.1| GENE 41 44990 - 45184 75 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLVALIGISSLKGTIEAIEGFLGGAFSFSTEELTNSSELLFLGSMENFYSHCGACRFFG RSQN >gi|228308482|gb|ACLR01000088.1| GENE 42 45200 - 46879 1736 559 aa, chain - ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 100 288 125 291 292 80 34.0 7e-15 MKKNYTLLLLLAMTLLGVATQTKAQAPLMEPSINLTFITDDENASLVIHVLAPTDGCWID LNGDGQCQDNEKIQKGDEKRAIDLPKDLTKATIYGPITYLNLNKTALTSIDLGEINTLEE LWCYQTGITQLDVTGQPNLEKLFCYSTVIKELDLSKSPKLKELGVQNCMLKAIDLSNLPE LEVVVLSGNKISSVDLTHNPKLKVFHGEKMALTSLDLSKCPELTLIQCSQNYDLKTVDLS MLPNLEVFKADLIGLKSIDVSHNPKLKQLHLGGNKLTTLDLSKNPLLEELNLNNNKKLSS LDFLSTLPELKMLTIKKTNLTVDPDFSKNTKLEYINMASCGFKKVDLSHNPMIKKLYCER NELTELDLTKTPLLRDFIAFENKLTKLDFSACKELQYTDISVNEIAEPAMQVIVESIPKF ELLDANFLAAGRFIAIDIAEGEEKNGITDRQVKVATDKGWVLMNGNAGDPQPYPGRSTVS VTQLSTAETAIYYNAADQRLYARLAEDTPATLLRVYAASGEELLSEVYDQEDGSIYLGYL PQGVYIVQLGDTTYKFVKR >gi|228308482|gb|ACLR01000088.1| GENE 43 46972 - 48087 1391 371 aa, chain - ## HITS:1 COG:ECs0870 KEGG:ns NR:ns ## COG: ECs0870 COG0842 # Protein_GI_number: 15830124 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Escherichia coli O157:H7 # 2 370 5 366 368 171 28.0 2e-42 MLLALIRKEIYNLLRNRLLLGMVVMYPIVVLMLLPFATTTDIKNLQTVVIDHDHTSLSQR LQEQFFSSGYFVNAWQGKLPPTLQEGMKLIEDGQADLIITIPPRFEEHLMRYQKSQIEAR INAFNATKGAVAGGYTQQIVQQFVTQLNESTGIEELATIPIRIVEVNRYNPQINYKNYII PGLVAMLITMTAFILPALNMVQEKEVGTIEQMNVTPIHPLIFMLSKALPYIVISIFMVFL AHPIVRLLYGLWPQGNVGMMIVGTMLYVLAMSGLGLFITNFAHTQQQAMFSFFFVLMFFI LLGGLFTPIEGMPSWARALAVSHPFTHYSILMRTYYLKPVAFTELWRELTALSVFAVVNA TAAILTYRKRA >gi|228308482|gb|ACLR01000088.1| GENE 44 48105 - 49241 1332 378 aa, chain - ## HITS:1 COG:RSc0165 KEGG:ns NR:ns ## COG: RSc0165 COG0842 # Protein_GI_number: 17544884 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Ralstonia solanacearum # 4 378 13 381 381 179 29.0 8e-45 MRVFFKFVRKEFIHIFRDPLTLMLLIGMPIVLVLAFGFALTSEVKQIDVVVATPTRTPFV ESLFTHLDESDAVGSVSLITPHKDMDEALRTGAAHVIVVLPNDIDKELLAGTEPTVQLRL DASDPNTSALISAQIQGIIYTTVQQYLEQFGALIAMRMAERRPYQIETFTTLLYNPEMRA PYYFVPGVMSLVLMIICALMTSVSIVREKEFGSMEVLLTSPVNPITILLSKTVPYFTLSI FNVVTILLLSRFVLGVPLLGSVSAIFFVSLLFILVSLLLGMLISTITDNQTAAMLISGAG LLLPVAMLSGMFFPIESMPILLQYFARAIPATWYSIAVKKLMIQGLGWSSILWEALIMTG MSVVLVILALLNFKKKLE >gi|228308482|gb|ACLR01000088.1| GENE 45 49356 - 49913 643 185 aa, chain - ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 4 183 1 176 184 102 38.0 3e-22 MSNMNNILVFLAEGFEEVEALAIVDVLRRGNQPVTTVSITGSLAVKGSHDVTIQADMLLE ELQSGALPKAIALPGGLTKLNECEPLLELIRRQHEAGGTIAAICASPRVLGAAGIGDGKM RATCYPGCEEQVPGFVLTGADVEVCGHIITGRGPALALPFAFRLLEEVAGRKTAEQVAAG FLYSL >gi|228308482|gb|ACLR01000088.1| GENE 46 49974 - 50759 1017 261 aa, chain - ## HITS:1 COG:no KEGG:PGN_0674 NR:ns ## KEGG: PGN_0674 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 10 260 11 275 275 107 32.0 3e-22 MSKVRYDRWIAGGVALLLHLLVVGLLFWLSMGISKQERTRDKEIWISVGVDPDFGDKIEQ QGDLVAASTSARPASATSESAQPTPPQQQAPKAPEATPTPRPTPTPVRSTTTKETPKPVQ KPATPSKREVDNKVAGLFDRKKPTGSESGTGKSDAGSGVADKGKAGSSAGWSLDGRSIVG NGGRPVMPTRVPDIRGTVVVEITVNAAGQVTNAEVRLRGTNVVDSKLRSAALQAARKTRF NAVGGVPDQKGTITYHFDVKG >gi|228308482|gb|ACLR01000088.1| GENE 47 50752 - 51159 487 135 aa, chain - ## HITS:1 COG:no KEGG:BF3738 NR:ns ## KEGG: BF3738 # Name: not_defined # Def: putative tansport related protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 123 20 137 145 94 50.0 8e-19 MASMTDVIFLLLIFFMVVSTLVVPNAIKVNLPSSQSTATTQEPVARVTIDAEGYYYISTE SAPETTLLPVEELEARLYEIGAAHDEEEDPYVVLYADKSVSYGEIVKVLNASATAGLRMI LATEALQDNSTETDV >gi|228308482|gb|ACLR01000088.1| GENE 48 51234 - 51908 855 224 aa, chain - ## HITS:1 COG:XF1079 KEGG:ns NR:ns ## COG: XF1079 COG0811 # Protein_GI_number: 15837681 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Xylella fastidiosa 9a5c # 24 224 1 200 220 98 32.0 9e-21 MYPILQIANTVADQTATEPATMSLWELACAGGWIMIVLLLLSLVAIYVFVAKYIELRKVN RPDDSLIARIKDYLQMGRKDSAIALCKEKNTPEAHMIEKGLKRLGQPASEVLPAIENVGS YEVGRLERGLPLLATIAAGAPMIGFLGTVTGMVQAFFDLANAPGGIDVSLLSSGIYQALV TTVGGLIVGIVTLFLYNYLVGQINRIVNRLEANTLDFMDVINEL >gi|228308482|gb|ACLR01000088.1| GENE 49 51932 - 52660 695 242 aa, chain - ## HITS:1 COG:XF0060 KEGG:ns NR:ns ## COG: XF0060 COG0854 # Protein_GI_number: 15836665 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxal phosphate biosynthesis protein # Organism: Xylella fastidiosa 9a5c # 2 235 5 247 260 209 50.0 4e-54 MTRLSVNINKIATLRNARGGDTPNVVLAARRCQEFGAEGITVHPRPDERHITYQDVRDLR EVVTTEFNIEGYPSDSFLDLVCSVRPEQVTLVPDKPDALTSDSGWAVADCRDLLKPIVER LKQAGIRVSLFVGTDPRHIEAAAEIGADRVELYTEPYASQMAQSGDPKVIVAPFAEAARV AQRVGLGVNAGHDLNRDNLAYFVQHVTPLDEVSIGHALISDALYLGLEETIAQYLKQAHS NS >gi|228308482|gb|ACLR01000088.1| GENE 50 52724 - 52957 250 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLSRKSSNSSVEIAESPRRNKKILRNFEIFLPKFHFILPNFYFPAPWRIFICSVEIFDF LGRNCNQRRCISGYKQP >gi|228308482|gb|ACLR01000088.1| GENE 51 53079 - 54293 1492 404 aa, chain + ## HITS:1 COG:no KEGG:BDI_2593 NR:ns ## KEGG: BDI_2593 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 27 404 46 428 428 87 25.0 7e-16 MTSTMQRRLISLLALVLLLSSTTTYAQEQVRFTFTGFVQAIAQYGSESDYIRVGNITAPH DQPTTRMGIRRGRLAAIATYGDLAARLEVNATEQKISIFNVYAEYKPHWAEGAFVKGGLM TPSFGYELPYSSSKRAAFERSHYMGDLFPGDIDMGLAMGYNGTLDQSKRWRLESTLSILS GNVDKGMNKNLPNLALRLALTEQGNNHAISFGLSGYAGTMPTPGGYYAFDKGTATLKKDR MLRTYGGAFLTSTIKHQGGQLMLTTEGIMGLQPGWQHANLAVGAKANPTPGNDLFIQRPF IAGMAQIVERIKPVDLELFGRYAYYDRNRHFDPKAVQDVKLGQLSARTEGRSHQLSTGVN YFLQEDHLRLSLQYDCFLRQQIEQQALVAAKPLHMVTVGAQYKF >gi|228308482|gb|ACLR01000088.1| GENE 52 54684 - 56033 1370 449 aa, chain - ## HITS:1 COG:VC0090 KEGG:ns NR:ns ## COG: VC0090 COG0534 # Protein_GI_number: 15640122 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Vibrio cholerae # 14 429 16 430 454 208 34.0 2e-53 MHAKVEDPQLSRQINRQILWLTIPNIISNITVPLLSLIDVGLAGHMAHPEAIGSVTVAAT ITNTIYWLFGFIRLGTTGLVAQAYGRQDSSDINRQLARGITMALLCTIVVLLVSPFATLL SGLVTGGATERLGVEAEQYIQIIFYAAPAVMLIYALNGWFIGMQNSRVPMIASMSALVVN FLVSYTLVVHYQMGVEGLAIGTCVAQYSQALILLTTLLIKYRYLVRHLRFGHFTDTKGYG RYLILGKDLMLRSLLLSSITLFFTYAGVREGAIAVGANALLMQFFSIFSYFMDGFAYAGE SLSGRFYGAGRMDLLRAVILRLFAIGIVLSLLATTLFALYPDGLLRFLSSHDEIVAYAKQ YHLWAALIPLVGFGAFLWDGIYAGTTRSAGLKWSMIGSSIVFFALYYLLYNLLGMTALWI AFDSYLLVRTGILTGIWCERPMRVSTSCS >gi|228308482|gb|ACLR01000088.1| GENE 53 56035 - 56937 769 300 aa, chain - ## HITS:1 COG:alr4490 KEGG:ns NR:ns ## COG: alr4490 COG1091 # Protein_GI_number: 17231982 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Nostoc sp. PCC 7120 # 6 299 5 286 294 196 40.0 5e-50 MSRGRIILLGASGQLGRSLTRELAERGNPYELVSYTHEQLDYTDTESVTRAIKLWEEQAI AHDWTMIVNCAAFTQVDLAEDKAQYRDLLALNALLPAQLAESRLPIIQISTDYVFDGCQG TPYHEEDATNPRSLYGRTKRQGELALLMHPTHPAEQHLVIRTQWLWAPWGHNFVRTMLRL AREGKALRVVNDQIGSPTSALSLARAICEIIDCYDKERSFRTSLLHYANQGICSWYDLAH EAIATHVPTYDLSQLTPIPTAEYPTAAERPAYSVLATDRITACYGITPPQWQDELQIAID >gi|228308482|gb|ACLR01000088.1| GENE 54 56934 - 57512 473 192 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469913|ref|ZP_04054852.1| ## NR: gi|228469913|ref|ZP_04054852.1| hypothetical protein PORUE0001_1233 [Porphyromonas uenonis 60-3] # 1 192 1 192 192 330 100.0 3e-89 MTNEANTPGLLPDVPEYTAQIIHLWIAEESVRILTRQQQPLELLQQHLMQSDPWRQNLMK ELLSEASVAQILSGQHAPITKQLMAECEAIHKKVSQDERNIVYQGCYILVLPTIVAFRAK DPHAKEMGEIEILCTILYNATVRGLAQGSGESAAHSPTDTRIYQQISALFALLDQEYHRK HHQEESQEETRS >gi|228308482|gb|ACLR01000088.1| GENE 55 57523 - 58731 1156 402 aa, chain - ## HITS:1 COG:BMEI1139 KEGG:ns NR:ns ## COG: BMEI1139 COG4591 # Protein_GI_number: 17987422 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Brucella melitensis # 7 392 16 406 422 119 24.0 9e-27 MRLPFFIAWRYLFAHKKLGAINIVTRVSVLAIAVVSMTMICVLSIYNGYEQMILDKVVGL DPQLLITKGDEAPFDQSVVTQEIHTIKGIKAIAPLVWGEGLVSRSEGESFSAAHLYGVDS SYLRISQMDKYLYSGDIAIHPGQYNLGASIAINLNTIAHDTDPLIITLPKRKGYINPIMP MTSLRRSQGVPVSVLFTDNVVYDNSIFMPLSELRSLLMLDENQAHGLALQLAEGADEGAV QKAIATTLGDEYIVRNRPEQQPHLMRLVSIEKWITSLIFAFILLLAAYNVMASISMLLIS KQEDIAILHALGETPREIRRTFQLEGLMVTLIGAVTGIAIGIILCLLQIHYGWLTMDLAL ESQPYPVAIRLTDLLVVLLLVFAVGYLAAVYPVRKLIAHRKA >gi|228308482|gb|ACLR01000088.1| GENE 56 58754 - 59095 542 113 aa, chain - ## HITS:1 COG:lin1364 KEGG:ns NR:ns ## COG: lin1364 COG0858 # Protein_GI_number: 16800432 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Listeria innocua # 7 111 4 107 114 59 35.0 1e-09 MTMDTRRQQKIARLIQKEMGEIFRPLTQQLRGVLVSVTLVRVTSDLSRAHIYLSIFPSER ADELLKYIQDNAGSYRYELGQRTGQQLRVIPEMEYHIDDSLDYLERIDKLLEQ >gi|228308482|gb|ACLR01000088.1| GENE 57 59235 - 59393 102 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 47 43 89 91 69 74.0 6e-11 MKLRKKQIKVPINFFMPPWRISVFYRDIFDFLGGVVSRALKGIGVPRSHQSH >gi|228308482|gb|ACLR01000088.1| GENE 58 59698 - 61863 2840 721 aa, chain - ## HITS:1 COG:no KEGG:LLO_3002 NR:ns ## KEGG: LLO_3002 # Name: not_defined # Def: transmembrane protein (fibronectin III domain and GP5 C-terminal repeat) # Organism: L.longbeachae # Pathway: not_defined # 22 630 1760 2315 3329 103 23.0 2e-20 MKRLLPILLCLLALAVPRLYGQDHTVTFSAQPADGGTVKATYAEGFKNVVITSGAKVPAG KYVTFKAEANEGYEFEKFTVNGLDAPEDFTNPGQYATELSGDLNVVAIFKALAPAKKYAV TFTAEPAEYGTLTATRYDRDSEKDIPFNSGDEIEDGIWVTFNAKPGADYKVEKWLVNGTA IEMPSNPNKHEIELKEALDVKVVFTTKPNEVTLKYSVAAEPAEAGQIAVAVTPKGGGDAV SVESGKKVARGSSVTFTAKPAAGYEVEKWLVNGTKDKKAGQSTTLTITLDEDTEVQLVFQ KEAKKCTINLSVTPVEGGTIKATGYVNDVFKTITDGEVVPENSYLDFEATANEGYEFEKW MYNGAEKKNLLGEPNKLSFVQIIDNTNVVAHFKKVASKIKITYSAGEHGKFTKVKVQKDG EKDVIIESGAEVDRGSYIVFPVEPDKGYIVDKWFVNGDEVHSREVNSYDATFEETSEVKV TFRKPKLTIADAEGGKIVAKVGDKEVSNGADVALGENVSIEAIPDAGYELTALTANDKDI LAAKSFEMKGDTKVAATFTKKANVANYKVTLKSNEHGTISIKEKFDLNAVPEGTKLTVVA KGANDKCELTKLTANGVDILKDKTFTVTKDTEVIAEFVDHTGIDAVAADAFVIYPNPASE SATITGLAPEAAVALYTLDGQLITRLAADRSGHLQIDLTALSDGTYLVVTEGAAQRLVVK H >gi|228308482|gb|ACLR01000088.1| GENE 59 62218 - 63576 1869 452 aa, chain - ## HITS:1 COG:CAP0035_1 KEGG:ns NR:ns ## COG: CAP0035_1 COG1012 # Protein_GI_number: 15004739 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Clostridium acetobutylicum # 2 434 8 443 448 322 39.0 1e-87 MDIKEMVSLAREAQKDYQARFDQDAVDQVVKALCRVVYDNAEMLAREAIDETEMGVYEDK VAKCRNKSKGVWSNLQGKKSMGVLDIDEKTGLIKIAKPVGVVAAITPTTNPIVTPMANIA FALKTRNAIIVSPHPRSKNCSAHTIQLILERLKEFNVPENLIQCVTEPSIQATQDLMAAV DVVVATGGMGMVHSAYSSGKPSFGVGAGNVQVILDEHIDYNEAAETIIRGRIFDNGIICS GEQCFIYPEQHKEEIFQAFKDHGAYFVPAEEHDKMVNTLFVNGTISRDVVGKSVKHIAQL AGISIPEGTRMLIVPAKGVGTADPICKEKMCPVMTCLPYKHFDEAIELANTNLKMEGSGH TAGIHSNNQGNIIKAGDEITISRLIVNAPCSITAGGSIQNGLSVTTTLGCGSWGNNSISE NLTYKHLLNISRIARMSPHVHVPTDEEIWAMN >gi|228308482|gb|ACLR01000088.1| GENE 60 63618 - 64733 1597 371 aa, chain - ## HITS:1 COG:CAC1574 KEGG:ns NR:ns ## COG: CAC1574 COG1454 # Protein_GI_number: 15894852 # Func_class: C Energy production and conversion # Function: Alcohol dehydrogenase, class IV # Organism: Clostridium acetobutylicum # 1 371 1 371 371 392 52.0 1e-109 MQLFKLKTVIDQFETFADFAKAFALGERDLVITNDFLYEPFMKASQLPCHFVMQEHYGTG EPSEEMMNQILHDLQGTDFDRVIAVGGGTVIDISKLFVLRGLTDVMDAFDKKIPLVKEKQ LIIIPTTCGTGSEVTNISIAEIKSRQTKMGLADDAIVADNAVIIPELLKGLPFKFYACSA IDALIHAVESFLSPKCNPYTAIFSEAAWQIIIPVFQKIRDKGPDYRFDCMGEMIMASNFA GIAFGNAGVGAVHALSYPLGGTYHVPHGEANYQFFTEVFKAYERKAPAGQMQLLKEKLAK LMGCTPATLFDEIDTLLSALIAKNPLHTYGMKEEEIEGFADAVIATQQRLLANNYTPLTR DEIRDIYKALY >gi|228308482|gb|ACLR01000088.1| GENE 61 64749 - 66035 1637 428 aa, chain - ## HITS:1 COG:FN0621 KEGG:ns NR:ns ## COG: FN0621 COG0427 # Protein_GI_number: 19703956 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Fusobacterium nucleatum # 9 426 14 431 434 447 52.0 1e-125 MSIPFSSITPDEAVSHIQDGDFVVLSHAAAVPQACVAALARNYERFHNVRIFHMVTLGES PYTAPEMEGHFRLVTNFVGANTRPAVDEQRADFVPSYFYEVPSMMQPGGAFHPDVAIVQL SYPNEEGYCSFGTSCDYTKPAAEQARVVIGELNKQMPFVGGDNLIHISQLTHIVEADYPL YALDLPRIGEVEEAIGRNCAELIQDGDTLQLGIGAIPDAVLLFLKDKKDLGIHSEMVSDG VVKLIKANTITGRRKTLHPNKVVATFLMGTQELYDFAHNNPTIEMRPVNYVNDPRIIAQN DQLVSINSCIEVDLMGQVVSEAMGLRQFSGPGGQVDFVRGAAWSKGGRSIIAIPSTARRG TASRIVPLLTEGAAITTSRNDVDYIVTEYGVAHLKGKSLRERALALTAIAHPNFRPELEA ECKRRFKL >gi|228308482|gb|ACLR01000088.1| GENE 62 66148 - 66441 297 97 aa, chain - ## HITS:1 COG:no KEGG:PGN_0726 NR:ns ## KEGG: PGN_0726 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 11 97 6 92 94 64 33.0 1e-09 MTDLSSRVDEITTIISSYVRPQLLAHGGDIALLRVAGEQVFVKVSGSCQACPSLSSTIQE VVQETLRSELALPTLTVTVDDSVSDELIAEALRIIRK >gi|228308482|gb|ACLR01000088.1| GENE 63 66454 - 67929 1935 491 aa, chain - ## HITS:1 COG:AF0333 KEGG:ns NR:ns ## COG: AF0333 COG2368 # Protein_GI_number: 11497945 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Aromatic ring hydroxylase # Organism: Archaeoglobus fulgidus # 1 480 4 479 500 577 58.0 1e-164 MKTREEYIESLRALHLNVYFMGKKIDNPVDHPMIRPSLNSLAMTYELAQQEEYKDLMTAT SNITGKTVNRFCHIHQSAEDLVKKVKMQRLLGQKTASCFQRCVGMDAFNAIWSTTYEMDE ACGTNYHQRFRNYVQYCQDNDLVVDGAMTDPKGDRSLSPSQQEDPDLYVHINEIRPDGIV VTGAKAHQTGSVNSHEHLIMPTCSMREDDADYAVSFAIPSDAEGVTIIYGRQSCDTRKME EGADIDLGNSTFGGHETLFIMDHVFVPMERVFMCREYQFSNMLVERFAGYHRQSYGGCKV GVGDVLIGAAALAADYNGVPKASHIKDKLIEMVHLNETLYACGIACSAEGKKTKSGNYLI DMLLANVCKQNVTRYPYEITRLAEDIAGGLMVTMPSQADLQHEEVGPLVRKYLAGAKGTD TVNRMRILRLIENLTLGTAAVGYRTESLHGAGSPQAQRIMISRQCNMEAKKELARQIAHI DTSLDKKSQGK >gi|228308482|gb|ACLR01000088.1| GENE 64 68855 - 69091 170 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALSRKSSNASVEIAESPRRDKKIYRNFDLLLPKFHFILPNFYFPAPWRNFVSSLEISDF LRRNCHQRGSRSGYKVSL >gi|228308482|gb|ACLR01000088.1| GENE 65 69241 - 70236 1477 331 aa, chain + ## HITS:1 COG:PM1621 KEGG:ns NR:ns ## COG: PM1621 COG0180 # Protein_GI_number: 15603486 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Pasteurella multocida # 4 326 6 330 333 232 39.0 8e-61 MERVVSGIRPTGHLHIGNYYGAMRSFLEMQEQYDCYFFIADWHSLTTHPHPGDIVQDTDT ILAEYLACGLDPSKVVLYRQSDVPEVLELYLYLNMNAYLGELQRTTTFKEKARKQPDNVN AGLLTYPTLMAADILLQRAVKVPVGKDQEQNMEMARRFARRFNTIYGVEYFTEPASWTAM SKPIKVPGLDGSGKMGKSEGNAIYLYEDDKSISKKVMRAVTDAGPTEPNSKPSEPVENLF TIMDLVSTPETVAHFRQCYADCSIRYGDLKKQLASDLIAAIAPIRERILELSSDKDQLHK VATEGAMKARESARKTIEEVREIIGFAPTLR >gi|228308482|gb|ACLR01000088.1| GENE 66 70282 - 70755 699 157 aa, chain + ## HITS:1 COG:no KEGG:CHU_3583 NR:ns ## KEGG: CHU_3583 # Name: not_defined # Def: hypothetical protein # Organism: C.hutchinsonii # Pathway: not_defined # 15 115 5 109 116 93 44.0 3e-18 MDSNNNRPNPLIARGTVIRILPVQEGVSKSGNAWRKGAFVIETEAQYPRTICFNIWNNRI DEFPLTEGDLVEVRFDVESREYMERWYTDVTAYSVSKVDQTAAAAPEADPFAGKAPYVES AAPSTGFASQAPEAGAQNQFGGSFDPAAGDNADDLPF >gi|228308482|gb|ACLR01000088.1| GENE 67 70775 - 71254 638 159 aa, chain + ## HITS:1 COG:HI0033 KEGG:ns NR:ns ## COG: HI0033 COG1576 # Protein_GI_number: 16272008 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Haemophilus influenzae # 1 159 1 155 155 92 37.0 4e-19 MRTTLLVVGETSSPELHRLIEEYRQRIGGYIPFDLEVLPDPKRRKQQASIANQQQATCEA IASVIAPSDLVVLLDERGKEYTSRQWAEQLQRYMNSGAKRLLLVVGGPYGFTPEFKQRYG QQAWSLSRLTLTHEMVRLFAVEQIYRACTILRGEPYHHD >gi|228308482|gb|ACLR01000088.1| GENE 68 71268 - 71621 477 117 aa, chain + ## HITS:1 COG:no KEGG:PGN_0746 NR:ns ## KEGG: PGN_0746 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 113 1 112 115 165 70.0 6e-40 MIPFFEEADVAVTICDREGRIIEMNEQSRQVNLKPGQSLIGKNVLDCHPEPARSMLANMM EHQTKHVYTITKGDKKKLIYQIPWYENGEYAGFMELSMIIPHEMAHYVRQVPPEKKA >gi|228308482|gb|ACLR01000088.1| GENE 69 71624 - 71848 317 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469917|ref|ZP_04054856.1| ## NR: gi|228469917|ref|ZP_04054856.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 74 1 74 74 114 100.0 2e-24 MFRRDRIKLYFLLIWWIALNVWVWILQRTPFDWIRVGSSIGTLVVIALLAWIWHQRYRTE QKRRAEEQPEDEVE >gi|228308482|gb|ACLR01000088.1| GENE 70 71870 - 72805 678 311 aa, chain + ## HITS:1 COG:BS_ydhS KEGG:ns NR:ns ## COG: BS_ydhS COG1482 # Protein_GI_number: 16077654 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Bacillus subtilis # 7 227 4 228 315 130 34.0 3e-30 MSRKLTPIRCTPQYYHKIWGGGRLAPTGGDQQVGEVWLLSALAGQETPTEGDDYEEASLD ALVARYGDRLLGQGQTARCGGAFPLLIKLLDAATDLSVQVHPSPQEGGKDEIWYFLETEP TSRICLGLTEPMSADALRDITKRATLMDYLHWEPVRTGEAIALPAGTIHALGAGTMLIEV QDTSDITYRLYDYDRVDDEGSKRTLHIDEALRSATLEPHRLDARHLPLGTPHFVCREVTA KPELSQTITTDGASCAILVGISGTLALCDGESEAWQLAPHEALLIPAETLPLSVAPGDGK ALMITLTPAEL >gi|228308482|gb|ACLR01000088.1| GENE 71 72802 - 73413 480 203 aa, chain + ## HITS:1 COG:no KEGG:PGN_0688 NR:ns ## KEGG: PGN_0688 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 191 1 189 194 163 41.0 3e-39 MIQIDDKVVSFEILEEYFACDYAVCRGACCVHGDAGPPATARECQSYRRHLSLLEPHLAP EAREVLHHQGVSYIDITGEQVLSIVNDENCAFTLHPTPSEGVRCAIEWYTSTHPEIHLEK PISCRLYPIRVRQFKYFSSLHYDRWNICQAAVERGRKLGIKVYQFVREPLIAAFGAPFYD QLVEADKLLQEARRKEAESQAKR >gi|228308482|gb|ACLR01000088.1| GENE 72 73431 - 74804 1371 457 aa, chain + ## HITS:1 COG:no KEGG:BDI_0958 NR:ns ## KEGG: BDI_0958 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 455 1 471 482 226 34.0 1e-57 MKRRNHLYRSFGLLLIGGLLAYGLSELLVALGPIAGYQFKEFNPLSDLLDTTANQSYETL SIPLRTANDTTATELHSADSTNSKGVTTDTLTPLELSSRLMDYSEGQSALRRLRAALREG RSRSVRIAFVGDSFIEGDILVAPFRQALQQRYGGKGVGYVPLTSTVARFRQSIQQRFEGA WRQTLASKSNSRTLFTLSETFATATASASTSYKLTNADRVTLHYVSDTIPVAITYGINGG ERQHVELPASHGALAEYTFPHGAVKQFELATGGGDGTRFYGVCFDGMTGISVDNYSLRGS SGTKLTAVSSALTSQLSRFRPYDLIILSYGLNVLSPKDNNDSYEWYYDAMAKSIEHIQQL YPHATILLMSLSDRATLHEGEIHPLNGVARVLRIQHRLAQRYGLLFWNTHEAMASLGGIK GFVDKGWAAKDYTHISMAGGTQLAKLLTADLIGDESK >gi|228308482|gb|ACLR01000088.1| GENE 73 74791 - 76050 873 419 aa, chain + ## HITS:1 COG:NMA1480 KEGG:ns NR:ns ## COG: NMA1480 COG2755 # Protein_GI_number: 15794380 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Neisseria meningitidis Z2491 # 49 399 65 387 397 68 23.0 2e-11 MRANRVIRIICTLVGSLLLLAQTLLAQRAPQLVAPDGYLDQLWSACDQAKATAQTVSVIH LGDSHVQAGHFTKPIRKSFAQRWGDGGIGWVAPFRLLGTNPPIHTNVRASSAGTSGIKIT ERDYDRESPTGMVLQTKESGDITYTFQCGGGQTFDRIVIYRQRETGPFTLSGDSLRTLAQ DTLTREPIVTDTLLVGRYVSSAEVTAPASAVWYGASLERSSGGVLVHTIGYNGATYYTYG KGSFASSVAILRPRLIILSLGTNESVSRSFSRNGFGAEVARMVQSLRASNPDCAIVLTSP LANYQRIRTAHKRRRGKRRRRRTVYRTTYRANTNCQLVADELQQQARELGCGYIDLFAHF GGAAGAGQLLSDGILSGDRVHLTAAGYNKVGEAIATALQANYEQWCQRDTHVTPQASED >gi|228308482|gb|ACLR01000088.1| GENE 74 75995 - 77581 2063 528 aa, chain + ## HITS:1 COG:NMA1478 KEGG:ns NR:ns ## COG: NMA1478 COG1696 # Protein_GI_number: 15794378 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Neisseria meningitidis Z2491 # 48 528 8 478 478 249 32.0 1e-65 MSSGASATHTLPLKPPKTNRMLTPYLSRAAELLTYDSAAPMLFNSGLFLVLFLLFLPLYY LLRRLTLARIIYVVCFSLFFYYKSSGYYALILIMTATVDFIIGHLIAGTPERKVKRRWLI LSLCFNLGMLGYFKYTNFLLELFTPLVQWIGGLVGVSEMTATQLGPLDIFLPVGISFFTF QSLSYVIDIYRGEIRPLRRWVDYLFYVSFFPQLVAGPIVRAKDFIPQIYRPIRVTQQEFG EGLFLILSGLIKKAIISDYISLNFVDRVFDAPTLYSGFENLMAIYGYALQIYCDFSGYSD MAIGIALWLGFRFNINFDSPYRSATITEFWRRWHISLSSWLRDYLYIPLGGSRRGRLRTY LNLLVTMLLGGLWHGASLRFILWGGMHGVALALHKLYMQICPWARLDGASMGRFRRYLGM ILTFHFVCFAWIFFRMPTMEGIGQMFEMIRYEFHPEIIPQFIEGYWLVVTLIVLGFVAHF IPQRTFRPLERSISRMPLIGQALLFALVVLLVVQFQSSGVQPFIYFQF >gi|228308482|gb|ACLR01000088.1| GENE 75 77963 - 80341 1752 792 aa, chain + ## HITS:1 COG:no KEGG:BDI_2766 NR:ns ## KEGG: BDI_2766 # Name: not_defined # Def: lysyl endopeptidase precursor # Organism: P.distasonis # Pathway: not_defined # 119 790 88 748 749 204 28.0 1e-50 MNRLDMALATTAWRRFAQRSCVGFLSYGRCVCLSLATLLLALPAVAQLATPIPATIATDL SERHATLRNAQEAYSLHAVSRTEPVSTLRQQEETASSGLRLLELPAVEYRQLPESQLWGE WITTASGERAWRGALQLEEAGWNTLYFGNYQLSRGDMLIIANEAGEVRGAFTEANNVASH SLTTAPLYGERLTIYYYPASSQEESLPWRLEGITTALLSAIGEELPLPNGNHSGSGGSPW FIVKGLECAESTVLHPEVERIARSELMLVVRGKAFCSGTLLNNSRQDGDALVLTAAHCLN ANYSCRDLKYVRQSAEQTLFYFNYFSPTGDPLINGIEEQTLAGAELLAYNEEHDMCLLRI TGVRPDVPQGKCAIPPSYRPYFAGWNANRNFPAPVIGIHHPQASVRRYNRADEKPTLESY EISSLPIRWIDSHLYIKKWNAGTTAPGSSGSGLFDKNHHLIGALSGGNSYCHAPYQDYYY ALSEVFTGYSDDKCLEPHLAPGREQKIMEGLDPFADNPPMRLSHQLYSPMRDDVAIRSAD DAIQGVAVRYDIDTSVQYLGSVLVLGAMQRWMPVTLSIYADEGGKPGKRLYQQSLTNPSY MLVRGSEKAPKARVLRDAFQAFFPVQEGETLQLSAGTYYVALEGSAGEPLSLPLLLSKAQ SHDIPYAWHLVGSSWQPAQLGGAPYLGHYWVDPIVLGQLKANGTNSVLMTDEPRIILEGE RLQIILPTSWLEGRTPIELSLYSSSGQRVLTAPLTYSSSYLQLSDYALESGVYILHLAGG ECEQYSCKLICP >gi|228308482|gb|ACLR01000088.1| GENE 76 80380 - 81222 496 280 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 27 276 28 283 508 195 42 9e-90 MRTISSTAITDLVEKLCIEACVNLSPDIEAAMQQGAKQDRSPLARNVLNTIIENVHIARS ERAPMCQDTGMTVIFVDMGQDLHVEGDLIEDAINEGVRRGYTHGYLRKSVVSDPIHRHNT GDNTPAVIHYRIVPGDQMHITVAPKGFGSENKSALSMLTPSQGVAGIKQFVLDTISHAGG NPCPPIIVGIGIGGTMERSAELAKRALLRPIGERHPDPAVAEIEEELLQEINKMGIGPAG FGGDTTALAVAINTGATHIAGLPVAVNISCHATRHAEGTL >gi|228308482|gb|ACLR01000088.1| GENE 77 81234 - 81791 398 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 2 177 312 488 508 157 45 9e-90 MEEKKILRAPFTTEMITPLRAGDMCYISGTIYTARDAAHLRLVEMLKRGEEMPFDFEGQV VYYAGPCPAKPGQPIGSVGPTTGGRMDAYSPTLIAHGLRVMIGKGLRSPEVVDAIKQYKG VYFAAIGGAAALMGKCVKEAEVIAFDDLGPEAIRKLRVEELPVIVAVDSLGGDVYSLGRS QYARR >gi|228308482|gb|ACLR01000088.1| GENE 78 81967 - 82366 502 133 aa, chain + ## HITS:1 COG:no KEGG:PGN_1736 NR:ns ## KEGG: PGN_1736 # Name: not_defined # Def: putative glycogen synthase # Organism: P.gingivalis_ATCC33277 # Pathway: Starch and sucrose metabolism [PATH:pgn00500]; Metabolic pathways [PATH:pgn01100] # 6 133 4 130 271 179 66.0 2e-44 MAAKDKKVLYISQEIYPYLPESDLAHVARYLPEHIQNAGNDVRIFMPRYGLVNERRNQLH EVIRLSGINVIVDDYDHPLVIKVASIPSTRIQVYFIDNADLFGRKSLFGPPSEGAPSDNA DRSIFFIRGVLEA Prediction of potential genes in microbial genomes Time: Fri May 27 09:17:57 2011 Seq name: gi|228308473|gb|ACLR01000089.1| Porphyromonas uenonis 60-3 ctg1118640599628, whole genome shotgun sequence Length of sequence - 1068 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 168 80 ## gi|228471449|ref|ZP_04056237.1| conjugative transposon protein TraQ 2 1 Op 2 . - CDS 181 - 813 388 ## PG1474 conjugative transposon protein TraO 3 1 Op 3 . - CDS 825 - 1067 245 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228308473|gb|ACLR01000089.1| GENE 1 3 - 168 80 55 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471449|ref|ZP_04056237.1| ## NR: gi|228471449|ref|ZP_04056237.1| conjugative transposon protein TraQ [Porphyromonas uenonis 60-3] # 1 55 1 55 57 87 100.0 2e-16 MNRYFILPLLLAMLLGACSREVNVQEVYPFEVELMPYHQEATKGQAVEVRCKLTP >gi|228308473|gb|ACLR01000089.1| GENE 2 181 - 813 388 210 aa, chain - ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 21 210 10 192 192 125 37.0 1e-27 MTMTINNPIRYGRLASLPVALLCLLLLALPSVSKAQRAIPHQDGLILSGGVPLTNETPFV QWGNWTARVDYTHYFFHADYLVVGVEYSHDKRSYTDVLKNNYSIPVEDYLFKAGYMYPIL TDYTHTFLLYAGLSALCGYEDVNRRQYDLSNGATICSRSHFVYGGSAHLSAEIFLTDNWL LTVRGDGNFLVGSQLNLFRPLATMGFRFNF >gi|228308473|gb|ACLR01000089.1| GENE 3 825 - 1067 245 80 aa, chain - ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 2 80 263 341 341 94 58.0 1e-18 TQTAIQETILQPLRAYNDLAVVAPKSELRTIYALESFSLPEGKILEISLHELNGGRTLTF TVDNKDLVRARAIDDLELRF Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:06 2011 Seq name: gi|228308471|gb|ACLR01000090.1| Porphyromonas uenonis 60-3 deg1118640599669, whole genome shotgun sequence Length of sequence - 663 bp Number of predicted genes - 2, with homology - 0 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 206 94 ## + Term 224 - 257 -0.9 2 1 Op 2 . + CDS 274 - 579 134 ## Predicted protein(s) >gi|228308471|gb|ACLR01000090.1| GENE 1 3 - 206 94 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no QKTKRLSPLAFSSRGNRVSPRRSEQILPNFDFVLPNFHFILPNFHFSAPWETFVFSLAMW QFLREDR >gi|228308471|gb|ACLR01000090.1| GENE 2 274 - 579 134 101 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVLGAFTKAFVSTRKVAMRT HLRSLPRESQMKSATPERTQEWRMWMRLCQSLGICADAYLP Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:17 2011 Seq name: gi|228308468|gb|ACLR01000091.1| Porphyromonas uenonis 60-3 deg1118640599732, whole genome shotgun sequence Length of sequence - 674 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 10 - 276 323 ## PGN_1703 putative ribonuclease III + Term 425 - 456 4.1 Predicted protein(s) >gi|228308468|gb|ACLR01000091.1| GENE 1 10 - 276 323 88 aa, chain + ## HITS:1 COG:no KEGG:PGN_1703 NR:ns ## KEGG: PGN_1703 # Name: not_defined # Def: putative ribonuclease III # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 11 79 177 245 261 75 55.0 6e-13 MREHTVASIQNYKSELIEWVQKHHLSHEFRLEEHQTMPHDHFIYSVWIDGKPVGRGAGSS KKRAQQEAARDTLELLKQAYSAIQSRTS Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:19 2011 Seq name: gi|228308465|gb|ACLR01000092.1| Porphyromonas uenonis 60-3 deg1118640599599, whole genome shotgun sequence Length of sequence - 512 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 320 - 354 4.1 1 1 Tu 1 . - CDS 365 - 511 57 ## gi|228469603|ref|ZP_04054589.1| internalin-related protein Predicted protein(s) >gi|228308465|gb|ACLR01000092.1| GENE 1 365 - 511 57 48 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469603|ref|ZP_04054589.1| ## NR: gi|228469603|ref|ZP_04054589.1| internalin-related protein [Porphyromonas uenonis 60-3] # 1 48 432 479 479 101 100.0 2e-20 TLHSMTGERLYAGRADSRGVLQIDLTPYADGVYLVCVAGETYRVVVRH Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:24 2011 Seq name: gi|228308461|gb|ACLR01000093.1| Porphyromonas uenonis 60-3 deg1118640599684, whole genome shotgun sequence Length of sequence - 565 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 56 - 421 397 ## gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein Predicted protein(s) >gi|228308461|gb|ACLR01000093.1| GENE 1 56 - 421 397 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:30 2011 Seq name: gi|228308458|gb|ACLR01000094.1| Porphyromonas uenonis 60-3 deg1118640599730, whole genome shotgun sequence Length of sequence - 886 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 239 358 ## gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 + Term 255 - 308 18.5 Predicted protein(s) >gi|228308458|gb|ACLR01000094.1| GENE 1 3 - 239 358 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471453|ref|ZP_04056240.1| ## NR: gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 [Porphyromonas uenonis 60-3] # 1 78 345 422 422 166 100.0 6e-40 SGCVTGDLHSDYSLISAGPLVRCDFGIPLKYGNMLFFGAGYKYGFPIKDADEMAADNYKN VTPYGQSHTVFLSIGYMY Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:36 2011 Seq name: gi|228308455|gb|ACLR01000095.1| Porphyromonas uenonis 60-3 deg1118640599538, whole genome shotgun sequence Length of sequence - 521 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 407 123 ## gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 Predicted protein(s) >gi|228308455|gb|ACLR01000095.1| GENE 1 2 - 407 123 135 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470428|ref|ZP_04055325.1| ## NR: gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 [Porphyromonas uenonis 60-3] # 1 135 1 135 171 267 97.0 1e-70 MKQLESAQVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRRRKRPPQTTKGVVNHGFQDHL NTTPKYIATDHCRLT Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:43 2011 Seq name: gi|228308452|gb|ACLR01000096.1| Porphyromonas uenonis 60-3 deg1118640599568, whole genome shotgun sequence Length of sequence - 524 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 75 - 440 399 ## gi|228469935|ref|ZP_04054866.1| putative transposase Predicted protein(s) >gi|228308452|gb|ACLR01000096.1| GENE 1 75 - 440 399 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469935|ref|ZP_04054866.1| ## NR: gi|228469935|ref|ZP_04054866.1| putative transposase [Porphyromonas uenonis 60-3] # 1 121 1 121 121 218 100.0 1e-55 MKQEKSNRGRKGYPLDFKWRVIDGLLATGESIATTSQRYGITARTIRNWLRTFGVELPNQ STMSKTNKNKAVDPDYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:49 2011 Seq name: gi|228308450|gb|ACLR01000097.1| Porphyromonas uenonis 60-3 deg1118640599577, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:50 2011 Seq name: gi|228308447|gb|ACLR01000098.1| Porphyromonas uenonis 60-3 deg1118640599673, whole genome shotgun sequence Length of sequence - 546 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 251 262 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 278 - 337 1.9 Predicted protein(s) >gi|228308447|gb|ACLR01000098.1| GENE 1 2 - 251 262 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 83 1 83 84 167 100.0 2e-40 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFCCETTGGYDRALCDWLY Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:56 2011 Seq name: gi|228308444|gb|ACLR01000099.1| Porphyromonas uenonis 60-3 deg1118640599744, whole genome shotgun sequence Length of sequence - 549 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 266 349 ## COG2987 Urocanate hydratase - Prom 483 - 542 4.4 Predicted protein(s) >gi|228308444|gb|ACLR01000099.1| GENE 1 2 - 266 349 88 aa, chain - ## HITS:1 COG:SPy2082 KEGG:ns NR:ns ## COG: SPy2082 COG2987 # Protein_GI_number: 15675840 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Streptococcus pyogenes M1 GAS # 9 88 17 96 676 115 62.0 2e-26 MKRTCKFTLDATLPKYPTFEEGIRRAPDRGYSLTPAQTRVALQNALRYVPKELHAELAPE FLKELKERGKIYAYRYRPEGDLKAGPID Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:56 2011 Seq name: gi|228308441|gb|ACLR01000100.1| Porphyromonas uenonis 60-3 deg1118640599496, whole genome shotgun sequence Length of sequence - 501 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:56 2011 Seq name: gi|228308438|gb|ACLR01000101.1| Porphyromonas uenonis 60-3 deg1118640599563, whole genome shotgun sequence Length of sequence - 579 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 232 279 ## BDI_3154 putative Na+-dependent phosphate transporter + Term 297 - 349 16.4 Predicted protein(s) >gi|228308438|gb|ACLR01000101.1| GENE 1 2 - 232 279 76 aa, chain + ## HITS:1 COG:no KEGG:BDI_3154 NR:ns ## KEGG: BDI_3154 # Name: not_defined # Def: putative Na+-dependent phosphate transporter # Organism: P.distasonis # Pathway: not_defined # 3 72 486 555 561 66 42.0 3e-10 SELLRRDKLSEADARESYTLEKQLNDLRTLLKAQNMDNVRTQKYDYPESVSYMDLVGYYE QLGDYVLNVVQAATKG Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:59 2011 Seq name: gi|228308435|gb|ACLR01000102.1| Porphyromonas uenonis 60-3 deg1118640599711, whole genome shotgun sequence Length of sequence - 572 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 27 - 440 617 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|228308435|gb|ACLR01000102.1| GENE 1 27 - 440 617 137 aa, chain + ## HITS:1 COG:NMA0772 KEGG:ns NR:ns ## COG: NMA0772 COG3547 # Protein_GI_number: 15793747 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Neisseria meningitidis Z2491 # 14 126 203 314 321 62 33.0 3e-10 MYRHYLHLISCKGVGLVTSVMLIVFTDNFKGWSAKKMASYCGIAPFYESSGSSVFHKSNT GGYSNRRLKGILTQAARSAITHNPTFKQYYQRMKAQGKPYGVILNNVNNKLLHILFSLVA HDCDFELDHEAKRALRA Prediction of potential genes in microbial genomes Time: Fri May 27 09:18:59 2011 Seq name: gi|228308430|gb|ACLR01000103.1| Porphyromonas uenonis 60-3 deg1118640599627, whole genome shotgun sequence Length of sequence - 1179 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 351 - 872 32 ## PG1473 conjugative transposon protein TraQ 2 1 Op 2 . - CDS 885 - 1172 244 ## PG1474 conjugative transposon protein TraO Predicted protein(s) >gi|228308430|gb|ACLR01000103.1| GENE 1 351 - 872 32 173 aa, chain - ## HITS:1 COG:no KEGG:PG1473 NR:ns ## KEGG: PG1473 # Name: not_defined # Def: conjugative transposon protein TraQ # Organism: P.gingivalis # Pathway: not_defined # 9 134 16 141 154 72 34.0 7e-12 MNRYFILPLLLAMLLGACSREVNVQEVYPFEVELCHTIKRRLKGRQWKCVASSHHRSSLS LASTTYVSFSVAVREPPTECRGVELTDNDNYDLTIGDFRLYYTPEAGGQHTVELVVSDDA GQEQSLLLEFKLSEQSGGGNTPSPDTVNSSDWRCSARRERQLLYQWCGHRYSN >gi|228308430|gb|ACLR01000103.1| GENE 2 885 - 1172 244 95 aa, chain - ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 1 95 98 192 192 79 48.0 5e-14 MYPILTDYTHTFLLYAGLSALCGYEDVNRRQYDLSNGATICSRSHFVYGGSAHLSAEIFL TDNWLLTVRGDGNFLVGSQLNLFRPLATMGFRFNF Prediction of potential genes in microbial genomes Time: Fri May 27 09:19:05 2011 Seq name: gi|228308426|gb|ACLR01000104.1| Porphyromonas uenonis 60-3 ctg1118640599625, whole genome shotgun sequence Length of sequence - 2088 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 218 - 277 3.3 1 1 Tu 1 . + CDS 355 - 933 250 ## gi|228469955|ref|ZP_04054878.1| hypothetical protein PORUE0001_0510 + Term 975 - 1024 19.0 - Term 962 - 1011 19.0 2 2 Op 1 . - CDS 1036 - 1305 162 ## gi|228471476|ref|ZP_04056259.1| hypothetical protein PORUE0001_0727 3 2 Op 2 . - CDS 1352 - 2086 482 ## gi|228469953|ref|ZP_04054876.1| conserved hypothetical protein Predicted protein(s) >gi|228308426|gb|ACLR01000104.1| GENE 1 355 - 933 250 192 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469955|ref|ZP_04054878.1| ## NR: gi|228469955|ref|ZP_04054878.1| hypothetical protein PORUE0001_0510 [Porphyromonas uenonis 60-3] # 1 192 1 192 192 372 100.0 1e-102 MNTTKKWSLVAVLCGLMVATLLTACGGGMRNEPNPSKGYETDIEGEPSTSIEQILTLKAD RPVLLSYLGFGFFDAYINGEKKDSSFSGSLDLQPNLETTIHFKALPNSFNPKNLDALKLE VEFTLRAKEPFAIDPELDNQPNPLKPTTTVVSFTWQEKINGEVTRQESQTVKLYDPDNNA EYRSKEYKTGIK >gi|228308426|gb|ACLR01000104.1| GENE 2 1036 - 1305 162 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471476|ref|ZP_04056259.1| ## NR: gi|228471476|ref|ZP_04056259.1| hypothetical protein PORUE0001_0727 [Porphyromonas uenonis 60-3] # 1 89 254 342 342 171 92.0 2e-41 MGVKSDYAALKRSIAHGTSDGFIVVILPNVSISDPSLPDYDRKDRKPLFLTLGMMRSPYS DRPIHILQLLGMAEKSFWDSFSDFFTPFE >gi|228308426|gb|ACLR01000104.1| GENE 3 1352 - 2086 482 244 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469953|ref|ZP_04054876.1| ## NR: gi|228469953|ref|ZP_04054876.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 244 1 244 244 466 100.0 1e-130 VRGGNTPSPDDSQIPPIGDVAQGENGNYYINGADTGIAIKPNHKPVVTIVDGYYYIDGVK TPVPAPQAPVVPQYPDGVLVPALKKQGKYEVLLISKSPEVTYTDPTTNEKRKVVANGVRI EDGACLYQCLSPDSVPVPFATISGLPRIPDKRYQTDKNGCFVVPASDLPVKGLPETGVTK SIIINGKQYSSDKTTYVPSRMIVKLTYSHHKGSAFYFRLTQWDSEKKRWNFCPTGNSARW NGLW Prediction of potential genes in microbial genomes Time: Fri May 27 09:19:30 2011 Seq name: gi|228308423|gb|ACLR01000105.1| Porphyromonas uenonis 60-3 deg1118640599527, whole genome shotgun sequence Length of sequence - 710 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 356 - 408 11.1 1 1 Tu 1 . - CDS 433 - 708 430 ## gi|228471228|ref|ZP_04056041.1| hypothetical protein PORUE0001_1418 Predicted protein(s) >gi|228308423|gb|ACLR01000105.1| GENE 1 433 - 708 430 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471228|ref|ZP_04056041.1| ## NR: gi|228471228|ref|ZP_04056041.1| hypothetical protein PORUE0001_1418 [Porphyromonas uenonis 60-3] # 1 91 308 398 398 182 100.0 8e-45 KSGSTIELISYLFTQEWMKANIPGTDPLIKDFMTKNGFTYQGMEKVSIYDIEADLYQYYN DQLKVYFEYSLVGGAFPTAMGVYTKTPTVEF Prediction of potential genes in microbial genomes Time: Fri May 27 09:19:37 2011 Seq name: gi|228308420|gb|ACLR01000106.1| Porphyromonas uenonis 60-3 deg1118640599570, whole genome shotgun sequence Length of sequence - 509 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 507 641 ## PGN_1476 hypothetical protein Predicted protein(s) >gi|228308420|gb|ACLR01000106.1| GENE 1 3 - 507 641 168 aa, chain + ## HITS:1 COG:no KEGG:PGN_1476 NR:ns ## KEGG: PGN_1476 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 8 167 316 462 464 73 30.0 3e-12 CRTFTAGEGGTIAATVGTEAKAIQSKDQVEQGAVITFTATPKEGYELDHWMVNGKPAVAG ADTKIEGNKLIVTLGDQDLKVEATFKKVNAISQISEAELAVYPNPFAERIVITVPAECIG QTAYLTSMQGEVVLQMTLEQTETVLYTDALSQGTYLLRVGSHSQLLIK Prediction of potential genes in microbial genomes Time: Fri May 27 09:19:40 2011 Seq name: gi|228308415|gb|ACLR01000107.1| Porphyromonas uenonis 60-3 deg1118640599633, whole genome shotgun sequence Length of sequence - 1032 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 350 337 ## PG1475 conjugative transposon protein TraN 2 2 Tu 1 . - CDS 486 - 956 628 ## PG1476 conjugative transposon protein TraM Predicted protein(s) >gi|228308415|gb|ACLR01000107.1| GENE 1 2 - 350 337 116 aa, chain - ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 116 46 186 341 185 62.0 4e-46 MPDGRTVIPYGLEVTFDKTTHLIFPAPIRYVDLGSANIVAAKAESAENVLRVKASVKDFE TETNMSVICTDGSFYAFNVKYAKEPEKLSLEMVDFLHAGEGNLPSNKADIYFKELG >gi|228308415|gb|ACLR01000107.1| GENE 2 486 - 956 628 156 aa, chain - ## HITS:1 COG:no KEGG:PG1476 NR:ns ## KEGG: PG1476 # Name: not_defined # Def: conjugative transposon protein TraM # Organism: P.gingivalis # Pathway: not_defined # 1 149 301 449 453 117 36.0 1e-25 MRAIIDETKTIKLGDEVKMRLMEDIQIGSVVVPKGTTIVAKSTLTNNRLQLKVTSIEYRE RIIGVDLSAFDLNGQEGLYVPVTAEAVGLKALGEGLAETATGGISIQQSGKDQILANVSN GLIRAGGNYMRSKASEVKIKIKAGYQLYLYDKSQKN Prediction of potential genes in microbial genomes Time: Fri May 27 09:19:45 2011 Seq name: gi|228308412|gb|ACLR01000108.1| Porphyromonas uenonis 60-3 deg1118640599749, whole genome shotgun sequence Length of sequence - 578 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 46 - 363 478 ## COG0541 Signal recognition particle GTPase + Term 435 - 488 16.3 Predicted protein(s) >gi|228308412|gb|ACLR01000108.1| GENE 1 46 - 363 478 105 aa, chain + ## HITS:1 COG:aq_1720 KEGG:ns NR:ns ## COG: aq_1720 COG0541 # Protein_GI_number: 15606801 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Aquifex aeolicus # 1 99 337 435 454 94 51.0 6e-20 MGNLKDLVSMIPGVGKMVKDLDISNDAFKGIEAIIHSMTPEERAKPSILDGSRRKRIADG SGTSVAEVNRLIQQFDQVSKVMRKMQGGGLGRMQAKMQKKNKKRR Prediction of potential genes in microbial genomes Time: Fri May 27 09:19:46 2011 Seq name: gi|228308409|gb|ACLR01000109.1| Porphyromonas uenonis 60-3 deg1118640599777, whole genome shotgun sequence Length of sequence - 642 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 257 - 291 4.1 1 1 Tu 1 . - CDS 302 - 640 267 ## gi|228469603|ref|ZP_04054589.1| internalin-related protein Predicted protein(s) >gi|228308409|gb|ACLR01000109.1| GENE 1 302 - 640 267 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469603|ref|ZP_04054589.1| ## NR: gi|228469603|ref|ZP_04054589.1| internalin-related protein [Porphyromonas uenonis 60-3] # 1 112 368 479 479 208 100.0 1e-52 SLVIDGVVNITATKKVVVTDNVTIKATFVDHTGVETTVTQRMQLYPNPATDYLLVEGVAP ASEVTLHSMTGERLYAGRADSRGVLQIDLTPYADGVYLVCVAGETYRVVVRH Prediction of potential genes in microbial genomes Time: Fri May 27 09:19:52 2011 Seq name: gi|228308406|gb|ACLR01000110.1| Porphyromonas uenonis 60-3 deg1118640599634, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 398 479 ## PG1476 conjugative transposon protein TraM Predicted protein(s) >gi|228308406|gb|ACLR01000110.1| GENE 1 2 - 398 479 132 aa, chain - ## HITS:1 COG:no KEGG:PG1476 NR:ns ## KEGG: PG1476 # Name: not_defined # Def: conjugative transposon protein TraM # Organism: P.gingivalis # Pathway: not_defined # 1 131 301 431 453 102 35.0 5e-21 MRAIIDETKTIKLGDEVKMRLMEDIQIGSVVVPKGTTIVAKSTLTNNRLQLKVTSIEYRE RIIGVDLSAFDLNGQEGLYVPVTAEAVGLKALGEGLAETATGGISIQQSGKDQILANVSN GLIRAGGNYMRS Prediction of potential genes in microbial genomes Time: Fri May 27 09:20:14 2011 Seq name: gi|228308350|gb|ACLR01000111.1| Porphyromonas uenonis 60-3 ctg1118640599720, whole genome shotgun sequence Length of sequence - 65528 bp Number of predicted genes - 53, with homology - 50 Number of transcription units - 23, operones - 14 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 45 - 2087 2140 ## COG0296 1,4-alpha-glucan branching enzyme 2 1 Op 2 . - CDS 2090 - 4498 2262 ## COG0475 Kef-type K+ transport systems, membrane components + Prom 4939 - 4998 3.5 3 2 Op 1 . + CDS 5019 - 5912 1233 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 4 2 Op 2 . + CDS 5923 - 9267 3769 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) + Term 9289 - 9327 -0.7 5 3 Op 1 . - CDS 9309 - 11360 2519 ## PG0362 hypothetical protein 6 3 Op 2 . - CDS 11357 - 11827 550 ## BDI_3688 hypothetical protein 7 3 Op 3 . - CDS 11852 - 12274 609 ## PRU_2394 hypothetical protein 8 3 Op 4 . - CDS 12308 - 12964 746 ## COG0461 Orotate phosphoribosyltransferase - Prom 12995 - 13054 2.6 - Term 13123 - 13173 11.2 9 4 Tu 1 . - CDS 13218 - 16127 3870 ## COG0342 Preprotein translocase subunit SecD - Prom 16154 - 16213 3.6 - Term 16200 - 16233 -0.3 10 5 Op 1 . - CDS 16336 - 16653 375 ## COG3093 Plasmid maintenance system antidote protein 11 5 Op 2 . - CDS 16646 - 16966 199 ## BF3879 hypothetical protein - Prom 17036 - 17095 4.2 12 6 Tu 1 . - CDS 17183 - 17578 264 ## gi|228469974|ref|ZP_04054890.1| hypothetical protein PORUE0001_1119 - Term 17617 - 17646 3.5 13 7 Op 1 . - CDS 17662 - 17859 146 ## gi|228469976|ref|ZP_04054892.1| hypothetical protein PORUE0001_1120 14 7 Op 2 . - CDS 17856 - 18098 199 ## gi|228469982|ref|ZP_04054898.1| hypothetical protein PORUE0001_1121 - TRNA 18211 - 18286 85.7 # Gly CCC 0 0 15 8 Op 1 . - CDS 18498 - 18851 271 ## 16 8 Op 2 . - CDS 18887 - 21352 2475 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily 17 8 Op 3 . - CDS 21396 - 23252 225 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 18 8 Op 4 . - CDS 23275 - 25209 2075 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 19 8 Op 5 . - CDS 25209 - 27188 1984 ## COG0457 FOG: TPR repeat 20 8 Op 6 . - CDS 27194 - 27760 698 ## COG0242 N-formylmethionyl-tRNA deformylase 21 8 Op 7 . - CDS 27786 - 28211 639 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 22 8 Op 8 . - CDS 28227 - 29849 2101 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Term 30203 - 30246 1.1 23 9 Op 1 . - CDS 30286 - 32205 1295 ## COG0826 Collagenase and related proteases 24 9 Op 2 . - CDS 32245 - 32904 872 ## COG0035 Uracil phosphoribosyltransferase - Prom 32933 - 32992 3.2 25 10 Tu 1 . + CDS 32903 - 33760 894 ## BDI_1856 hypothetical protein + Term 33812 - 33858 11.2 - Term 33794 - 33851 18.6 26 11 Tu 1 . - CDS 33873 - 34391 513 ## gi|228470012|ref|ZP_04054928.1| hypothetical protein PORUE0001_1133 - Prom 34467 - 34526 2.5 - TRNA 34503 - 34575 89.6 # Gly GCC 0 0 27 12 Tu 1 . - CDS 34793 - 35074 467 ## PROTEIN SUPPORTED gi|228469970|ref|ZP_04054886.1| ribosomal protein S15 28 13 Op 1 . - CDS 35223 - 36239 954 ## BT_1831 hypothetical protein 29 13 Op 2 . - CDS 36256 - 36924 930 ## COG2860 Predicted membrane protein 30 13 Op 3 . - CDS 36939 - 37574 712 ## COG0572 Uridine kinase 31 13 Op 4 . - CDS 37593 - 38648 1164 ## COG1216 Predicted glycosyltransferases 32 13 Op 5 . - CDS 38667 - 39977 725 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 40037 - 40096 3.1 - Term 40218 - 40261 12.1 33 14 Tu 1 . - CDS 40299 - 41759 1851 ## gi|228470013|ref|ZP_04054929.1| conserved hypothetical protein - Prom 41863 - 41922 3.2 + Prom 42045 - 42104 3.0 34 15 Tu 1 . + CDS 42141 - 43184 694 ## COG3943 Virulence protein + Term 43313 - 43348 -0.4 35 16 Tu 1 . - CDS 43349 - 43543 229 ## - Prom 43734 - 43793 5.1 + Prom 43686 - 43745 2.2 36 17 Op 1 . + CDS 43769 - 44335 831 ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 37 17 Op 2 . + CDS 44345 - 45433 815 ## COG0082 Chorismate synthase - Term 45282 - 45323 -0.9 38 18 Op 1 . - CDS 45410 - 46783 1184 ## COG1232 Protoporphyrinogen oxidase 39 18 Op 2 1/0.000 - CDS 46796 - 48109 1574 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 40 18 Op 3 . - CDS 48113 - 49123 1058 ## COG0502 Biotin synthase and related enzymes 41 19 Op 1 . - CDS 49261 - 51300 2113 ## COG3104 Dipeptide/tripeptide permease 42 19 Op 2 . - CDS 51340 - 52449 991 ## PG2083 hypothetical protein - Prom 52494 - 52553 2.9 + Prom 52947 - 53006 8.3 43 20 Op 1 . + CDS 53035 - 54963 2470 ## TDE0741 hypothetical protein + Term 54982 - 55040 3.5 44 20 Op 2 . + CDS 55201 - 55464 454 ## PROTEIN SUPPORTED gi|228470010|ref|ZP_04054926.1| ribosomal protein L31 + Term 55524 - 55570 9.1 - TRNA 55683 - 55757 81.2 # Met CAT 0 0 + Prom 56010 - 56069 3.4 45 21 Op 1 7/0.000 + CDS 56106 - 57461 1638 ## COG1726 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA 46 21 Op 2 9/0.000 + CDS 57533 - 58756 1561 ## COG1805 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB 47 21 Op 3 9/0.000 + CDS 58771 - 59520 1043 ## COG2869 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC 48 21 Op 4 9/0.000 + CDS 59545 - 60168 942 ## COG1347 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD 49 21 Op 5 7/0.000 + CDS 60220 - 60834 743 ## COG2209 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE 50 21 Op 6 . + CDS 60847 - 62094 1667 ## COG2871 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF + Term 62129 - 62190 10.1 51 22 Op 1 . + CDS 62342 - 62953 796 ## PGN_0129 hypothetical protein 52 22 Op 2 . + CDS 62992 - 64431 1982 ## BDI_2595 hypothetical protein + Term 64541 - 64574 2.8 + Prom 64515 - 64574 1.8 53 23 Tu 1 . + CDS 64771 - 64947 149 ## Predicted protein(s) >gi|228308350|gb|ACLR01000111.1| GENE 1 45 - 2087 2140 680 aa, chain - ## HITS:1 COG:YEL011w KEGG:ns NR:ns ## COG: YEL011w COG0296 # Protein_GI_number: 6320826 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Saccharomyces cerevisiae # 24 679 15 703 704 481 42.0 1e-135 MKREKDSPRQAKPKPSTPLWARQDPWLAPYYETIEAWQSYVAARRQLFVGSQSLSSWACG HLYFGLHRTDDGWTAREYAPAAQAVYLLCDANQWRKDPNYRFVVNEERPGEWLLELPATA LHHLDYYKLLICTDHEELERIPAYAHYVVQDPQDYTFCARVWAPEEPYLVQAPAPQRPDT LLIYECHIGMSGEEMGVASYEQFRTERLPYIVSAGYNTLQIMAVQEHPYYGSYGYHVSNF FAPSSRFGTPDDLKRLVDEAHALGLYVIMDLVHSHAVRNEAEGLARYDGTRTLFFHEGSR GEHPQWDSLCFDYGRGEVVHFLLSNCHYWLTEYGFDGFRFDGVTSMLYEDHGLGRPFLTY ADYYNGNVDRDALTYLTLANELIHAVKPSATTIAEEVSGLPGLCESQATEGYGFDYRLAM NVPDYWIKLIKEQPDEAWNPENMWYELRNHRPSERTISYAESHDQALVGDKTIIFRLIDS DMYWHMQQSDYNDRVMRGIALCNMIRLMTFATMCGGYLTFMGNEFGHPEWIDFPREGNGY SYQYARRQWSLQANGLLRYKQLAHFDKGMLSLCRLTPRFAELSDYCYHSHTERQVIAFMR GDGYLFAFNFSPTESYTDYLIEGVPAGQYELLLDSDAVACGGFGRIDASVLHHTRATAEG GTELRLYLPSRSAQVYQRKR >gi|228308350|gb|ACLR01000111.1| GENE 2 2090 - 4498 2262 802 aa, chain - ## HITS:1 COG:SPAC105.01c KEGG:ns NR:ns ## COG: SPAC105.01c COG0475 # Protein_GI_number: 19114377 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Schizosaccharomyces pombe # 84 508 20 442 898 266 34.0 1e-70 MNTQQRQQAWWLYGGLMLIFVALLWWVAATDGAMSGSSESLVTAPVATATESWGEASEGA VVALDLTTPSSAMEATPWQSFVGSVRAHAASDIGMLLIQLVVILLVVRVVGWLFARLHQP TVIGEILAGILLGPSLLGAVWPEAMETLFPVHSLGNLELLSQFGLILFMFTIGMELRMKD LKGQAQQAFVISQSGIIFPFILGILLTYGLYSRPELLSEGSSFLSLALFVGISLSITAFP VLARIIQERSLSHSHLGRLALSTAAMGDIVAWLMLAAIMAVSQGGSFTSALYNMLFLALY LAVIFGILRPLFGLLGRRVRHREVLSKSLMGLIFILLMASAYFTEIMSMHALFGAFMLGL VMPENLDFRVIVKEKVEDLALLLLLPLFFVSSGLRTELGLVNTPELWALFGIFTLVAVVG KMGGTYLAARSCGIQRRESLYLGAYMNTRGLMELVVLRIGLDLGVLSTVLFTILVMMTLV TTIMTAPTLQLIDWLLKKKKTPQSLEHATGQVLISFGRAETGVTLLEFFHRLCGGTAPQV ACTLMHVTTDTDISTIDAEHYYASSFAAPMEMAKQLDLSVQRKYEIAESVPEAVLSHANH IQSNLLLLGASVNLSQDKKDRDLVAYSNKLTRRWGLLTGRRRKAKKEQSSHSFEELIATF AQEAPCSVGIYVDNGQTPIAHPLVLMQRPEDQKLLLVAEQVTQSADSPITLMPLSLHLAK PTAELSARVSWSGETFAEQVDLSAYDFAFIAYDAWAALTPAQQELLEQLPSYLILDIDEA TIELPTIHRPTTEAVSYLGKAS >gi|228308350|gb|ACLR01000111.1| GENE 3 5019 - 5912 1233 297 aa, chain + ## HITS:1 COG:sll0753 KEGG:ns NR:ns ## COG: sll0753 COG0190 # Protein_GI_number: 16331341 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Synechocystis # 9 295 11 291 294 276 51.0 3e-74 MTQESFIRLDGKTTATEIKKEIAQEVQQMVAAGQRPPCLGAIIVGHDGASETYIASKIKA CEEVGFISLTKRFDESITQEELIAEIEQLNKDPEVDGFIVQLPLPKHIDEQAVIHAVDYR KDVDGFHPINVGLLSLGEPCLVPATPKGVIELLKHYNLSTEGKHVVVLGRSNIVGKPIAQ LFLQKGAQGNATVTICHSRTKDIASICRQADIVVAAIGIPLFVKKEMVKEGAIVIDVGIT RVPDATKKSGSRIVGDVDFDEVAPHCSYITPVPGGVGPMTIITLMRNTILARQLRQK >gi|228308350|gb|ACLR01000111.1| GENE 4 5923 - 9267 3769 1114 aa, chain + ## HITS:1 COG:BS_mfd KEGG:ns NR:ns ## COG: BS_mfd COG1197 # Protein_GI_number: 16077123 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus subtilis # 28 1054 30 1114 1177 626 35.0 1e-179 MSLLDLWHDHPRIVELRQALQQDQCVELEGVTASAPAFILATLAREHPYLVIAEDADSAG YMLGDLEALGVKAYYYPSAFNRHIKYGQREPAQEVLRAELLACLAVGDTPLIVSYPEALA EAIPSQQEVAQSCFTLSVGDVISRDKLRERLLEEGFEEVDYVYSPGQVVYRGSLVDIFSY GSTYPYRIDFFDDEIDSIRRFDIESQLSVDQCERAEIAPALQVKGDASGGETSLLTLLSS DYQLWISRYESLAEQWKGLYDAELAVEYEGAFATQEEMRELLLPPDKLSAEVAQRTKILG TPTKGLSIVDQRITFATKPQILIHRHFDLLVEELQVRKRGFFKSFFLSESSAQAQRLKEI LIEREAEELLPEWVPLVVHEGFEDKDLDVLLLTDHQIFDRYHHYQLKSDRIRNADAAISL KELHAISPGDYIVHSDHGVGQFDGLLTTEVDGKPREVVKLVYQNKDVLLVSIHSLHKLSK YQAQEEGSPQLSKLGTGAWTKLKERAKTKIKSIARDLIALYAARKEQPGFAFSPDSYLQH EMEASFAYEETPDQLKAIEQIKADMESNRPMDRLVCGDVGFGKTEVAIRAAFKAVADSKQ VAVLVPTTILAYQHYQTFSQRLEGLPCRIEYLSRAKSDKQTKAILADLAEGQVDILIGTH RLLSKGVAFKSLGLLIIDEEQKFGVKAKEQLRKLQVNVDTLTLSATPIPRTLQFSLMGAR DLSNINTPPRNRQPVTTRLIRWSQETIADAIGYELARHGQVFFVHNRIESIHGVAGQIQE CVPGIRIAIAHGRLTPSETERILLDFAERKYDLLLATTIIENGIDMPSVNTIIINSAHRY GLSDLHQLRGRVGRGSQRAYCYLITPPLGTLTEAAARRVKAIESLSDLGSGMRIALQDLD IRGAGNILGTEQSGFIADLGFETYRKVFEEAVREVKQEDFAALFAAQTEQQAELGNALTD TTIDTDLDLSLPHEYIPQDSERILLYRELDELASDRELKDFADRLRDRFGALPPQTQGLL MVPRLRRLASHLGIVKVSLRREQMILFLPPSGSAYYQSKAFDILLKSVASYGKACEVRET REGHRSVKWHHVATVYQADKILSTLYKALFAHPA >gi|228308350|gb|ACLR01000111.1| GENE 5 9309 - 11360 2519 683 aa, chain - ## HITS:1 COG:no KEGG:PG0362 NR:ns ## KEGG: PG0362 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 5 683 43 722 722 489 40.0 1e-136 MNKLVRYALCLLSLWSLLATALQAQSRYDYDIPLPAFDKDPHELLYRGETLHSFLINPYT GALYESRPDTLSTLFHDQVKAESRSIVMAYLGNLRSPWIDMDYFNRLRPQHRFLFDQTLS GFVWDESRRLFYRTKTPFSKLFYQRNGDAQRREEQFDGTIAFNLGKRLAMGADFNYTYSP GYYIGNRTKSSDYRLFAALTLDRYEAYLSGGGNFARITENGGIMEDGYVNDPTRGNSGRR TLESHEIPVRQAERVWNGIDDAHVFLSQRYNFGSYRPRSASDTLTIFGERRTDADTTRFV PIASVGHILSFRQGVHQYVNRNQATWEQYPNHYAYMHKGPSGALDSLYVLPEDSTRRWQL DNSFIVSLREGFRPWVKFGLEAYVRLENKYYYTPDSIYRERPGHSTMDVVVGGRIARTSG HLLNFDAQLESTLIGENIGSILAQGGIATSFRLWSFPVGLRAWGNFENRRPDYFIRHFHG TFHRWDVDFGYERRLAFGGRLTLDKLGTSLSVETATLQNQLYWTSQGIVQQCADPIQILS ARLLHDYKWGWLAWRLQALYQLSTRQEVMPLPTLSLYGSLYTDFFYARVLRIMLGVDCRW HTRYYAPYYEPAVMQFVNQTKTKYGNFPHLNAFVSFQLKRARFFVEYYNLGDLFISPSER FSAAHYPINPPVLRLGISLDLNK >gi|228308350|gb|ACLR01000111.1| GENE 6 11357 - 11827 550 156 aa, chain - ## HITS:1 COG:no KEGG:BDI_3688 NR:ns ## KEGG: BDI_3688 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 132 1 133 157 70 31.0 2e-11 MKGARTMLLSLMTLLLLGCQGEVQYATPLRPVHYPIYFASAEGRALILVGGYLRITKPST AISAIGFGGILVIHGFAGSGTADYYYAYDLACPKELDPTNALLVNDKLEAVCPKCHSRFS IVYGGGTPVQGPAQSPLLPYRVLPIDGGLLITTPEL >gi|228308350|gb|ACLR01000111.1| GENE 7 11852 - 12274 609 140 aa, chain - ## HITS:1 COG:no KEGG:PRU_2394 NR:ns ## KEGG: PRU_2394 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 12 139 6 130 130 65 31.0 5e-10 MTIQSQPVASTYSCEAIYRKISDLTNLEELHQLLEEKQVKVSSLTSDRCEVQAQVMKFSA DLALVVSERIPTEEVRYQIEHDMLPAKVSIRLTPQESEGSTLVVSMEAKLNPFIAGMVQP RLEEAVQYIANMLGQIRYDA >gi|228308350|gb|ACLR01000111.1| GENE 8 12308 - 12964 746 218 aa, chain - ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 10 218 1 209 209 218 51.0 9e-57 MTSKDSVQKLSIAQSVAHRLLAIQAVELRPDAPFTWASGWLSPIYCDNRKTLSYPEHRSY IKQAFALQVSDLYPEAEVVAGVATGAISWGALVADELGLPFVYVRSSAKDHGKQNLIEGY LPEGARVVVIEDLISTGGSSMKAVEALQAAGAQVEGLMAVYTHGFAEAEELFAKAGVEMR TLTDYNEVIRQAVSAGYVSESDLEMLAQWRQNPSQWGR >gi|228308350|gb|ACLR01000111.1| GENE 9 13218 - 16127 3870 969 aa, chain - ## HITS:1 COG:AGc2877_1 KEGG:ns NR:ns ## COG: AGc2877_1 COG0342 # Protein_GI_number: 15888881 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 378 620 295 536 562 219 46.0 2e-56 MQNKGFVILFAALLTIICAFYISFTPVVRHYDQKALAMTAAGEDGKAYLDSMANEKVWFG YTLKKARNQQIGLGLDLKGGMNVVLKVNGRDLLRNLSGHNQSPAFIEAIDRAAKEGANDF VGTFVEAYKELEPSGSLAVIFSNGPLRDVISPKSSDQEVIKELQEKYSSAIDAAINVLKT RIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFWRTYTYDEIASDLN DANDRLTAMANGKDLTPADTTATEADSTAVQKPATGGVENVLFSKLNITNRGTIVGYARR ADLDKIDEMLEQAQKQKMIREDLMLLWGNSPIKDPQTGKETDIYELYAIRGNRNALPDLG GEVVTSARSEVRNDLGQNRPVVTMTMNDEGARKWARLTGDNIGRSIAIVLDGVVYSAPNV NSEITGGRSEISGHFTVDETTDLANVLNSGRMEASVEIEQESVVGPTLGSESIQAGIISF AIAIILLMIYMCLAYGLIPGLIADGALILNSFFTLGVLASFHSVLTLSGIAGLVLTLGMA VDANILIFERIKEELRAGKSMTRAIQDGYGNAFSAIFDSNLTTVITGGVLYAFGTGPIRG FATTLIIGVIASFITAVFLTRIVVEALDKKGRMDKVTYTTFLTRNLLNNPSFKILENRNK GFIIFGSILVLGLIGSFVWGLNRGIEFSGGRNYIVAFEQPVSSAEVREALTKPLEEHVLV TSIGTEGNQVRISTNYGIGMAQESEDEELLVIGKVFEGVQKFLPQGTTQQQFVDNYVVSS QRVSPSMSKDISRQAIIAVILSLIFMGLYILLRFRNWAFSLGAFASVATTTLLIVASYIL LWQIMPFTMELDQNFIAALLAIIGYSINDVVVVFDRVRETLHNYPNREEKLVMNEALNST LARTVQTSFSTFLVVFIIFLLGGASMRSFTFALLIGIVYGIFCTLFVASPIAYLVRSKQQ RKKLAAAKK >gi|228308350|gb|ACLR01000111.1| GENE 10 16336 - 16653 375 105 aa, chain - ## HITS:1 COG:XF1708 KEGG:ns NR:ns ## COG: XF1708 COG3093 # Protein_GI_number: 15838309 # Func_class: R General function prediction only # Function: Plasmid maintenance system antidote protein # Organism: Xylella fastidiosa 9a5c # 18 86 11 79 371 59 44.0 1e-09 MAKFSLNQAVPFESTQVGEVIRDELEARDMKQSELSDITGIQRSILNNVIKGKRALTPEM AVLIEAALDIPAYVLMNIQSQDGLNKARASERVVLQLEKISLSTL >gi|228308350|gb|ACLR01000111.1| GENE 11 16646 - 16966 199 106 aa, chain - ## HITS:1 COG:no KEGG:BF3879 NR:ns ## KEGG: BF3879 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 106 1 106 107 105 61.0 6e-22 MNVTTDDEALIELYLRGKTADKRYKKVPVQAIKGFKKAVDIMKAVNRIEDLFRFNGLRYE RLVGDRKGQESVRCNDTWRLIFKSYPQEGSVVITEICLIEISHHYG >gi|228308350|gb|ACLR01000111.1| GENE 12 17183 - 17578 264 131 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469974|ref|ZP_04054890.1| ## NR: gi|228469974|ref|ZP_04054890.1| hypothetical protein PORUE0001_1119 [Porphyromonas uenonis 60-3] # 1 131 1 131 131 268 100.0 8e-71 MCRKKREQKLPEQENTIYTGFVRRGATVVSATEVKGEDFDELKAQLLQKMQELHHPGEDI YYTIVGDKQGQWHGHIDKKGDYEELSNSTPPWYLWIIFFPIAARSWVYLTIYYWICPKAL DRDRKQMGIND >gi|228308350|gb|ACLR01000111.1| GENE 13 17662 - 17859 146 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469976|ref|ZP_04054892.1| ## NR: gi|228469976|ref|ZP_04054892.1| hypothetical protein PORUE0001_1120 [Porphyromonas uenonis 60-3] # 1 65 1 65 65 121 100.0 1e-26 MTKKGGYYESNNDRIPWWAWILMIPGFILAPVFWFIHDLINPNKLKRDREAYWKKRGDGS TSPTA >gi|228308350|gb|ACLR01000111.1| GENE 14 17856 - 18098 199 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469982|ref|ZP_04054898.1| ## NR: gi|228469982|ref|ZP_04054898.1| hypothetical protein PORUE0001_1121 [Porphyromonas uenonis 60-3] # 16 80 1 65 65 102 100.0 1e-20 MCRRKRQQKHLFANTMYKGFVRRGAVVIPDTIEEGPDLEEVKRELLARMRAIQAKTRKRA RVKSCGIRYKATKMVSGMAV >gi|228308350|gb|ACLR01000111.1| GENE 15 18498 - 18851 271 117 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIRCSFEEFQNLSVEIFDYPVRNKKNHRNFEIFLPKFHFILPNFYSLVPWRNFVFSLAVS DFLVRDCISGWNVRSETWMNSLYSIAVRLLDFDQSTVFFVGNSSFTPYGTLVSPKWY >gi|228308350|gb|ACLR01000111.1| GENE 16 18887 - 21352 2475 821 aa, chain - ## HITS:1 COG:PA3339_1 KEGG:ns NR:ns ## COG: PA3339_1 COG1752 # Protein_GI_number: 15598535 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Pseudomonas aeruginosa # 38 305 24 294 308 162 36.0 4e-39 MKQPSALLASLLLSLVALCTPIMMQGQSDNASDSLKMRCGIVLSGGGAKGLAHIALLELI DSLQIQVDYISGTSMGAVVAGLYSAGHSASQIKELTRQEDWGRILSNRLPYDKVDMCEKE DYGAYALEFPMRRGIPKPPSSIIEGQYLMEVLMRYTFPVRHITDYAQMPIPLQLVASDVG AGGACVMTSGSMPLSIRASLAIPAFFAPAVVDGKLLVDGGLDRNFPVEEVRSMGANFVIG SYTGARLRNVEELEHSPIDVILQSYALLTKKEVERQASQVDVMLDFSQALRDYTSADFSQ RERIIALAEIEAHKLLPQLIALKARQVAQGITYQRRQIAPVSIPIQQVKISDQWGSPLEE SETKFIQSVIGDDLSSLDSLELLQQRIEMLMGYNRYAQVYYSYEADSTRGGHEVNTIHFF IKKKPQALLRLGAYYDPYESANIILNTSLRDLLLPNSRLSAKLAISQLPKLRASYYKWLD NGYSYWLSPYIALRLDRCDNIHLRYLSQIEDHTEATFYQASLVSGLKMGYTLSPQSQVTL GIQYGSMYVWQPRPPFDQEMKASAQAPSSDWVPMNQFNQLMQTNRTPKLSYRHGTWTMSL VYLQNSLNRKAFATRGNHFTLAAELTLKNSYALSPLPADASESQKQIHNLLNPEESISPQ RGPLLHLSVYEHLVTPLSRRVALHGRLFGGVNLDLGKPWRESFHFDSYLFLSQKFHLGGF ANVGLDDQPIFSGLRYREYPVNNLAALYLGVQYTPIKNLYITPHISVGADIQAPNLQDSD LLYGAGIDLDYDSLIGPIKLSFSRSNVLRASRFFFSIGYAF >gi|228308350|gb|ACLR01000111.1| GENE 17 21396 - 23252 225 618 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 381 601 131 351 398 91 30 1e-17 MRQFLKLFGKYIRPYRHYITGGIIANILSALLNLLAFSLIMPILRILFGMERTTPVYHTL DSINWLRPSDWSVAVDYIVGNFNYYVSQLIQQYGPSRTLLLLCIYLVVMTLIKVGVTYGG IYMLVPIRTGVVRDLRNEFNAKLLRLPISLISEERKGDLLARFSGDVAEIEYSIISILES LIKNPILIVIYLIALFAISWELTLFVLFVLPIAGYIMGAVGKRLKRDSLEGQTQWGRLMS MVEETLSGLRIIKAFNAEQQISHRFTSANEHYRRTIAQVYARQGLAHPMSEFLGTTAIAI ILWYGGNLIFAGSSSITADAFIYYLVIFYSIINPAKELSRASYSIQKGLASMTRIQTILD YPERVTDPAEPLPVTFDQGISYEDVSFRYQEPWIIRHLNLTIPKGQMIALVGASGAGKST LVDLLPRFYDVTSGRITIDGTDIRQVKASDLRDLIGYVNQTPILFNDTIRNNITFGMERP VSDEEVRTAAEAANATEFIDQLPEGMEYNIGDGGSKLSGGQRQRLSIARALLKDSPILIL DEATSALDNVSEQLVQEAIQRLVSDRTTIVIAHRLSTIMHADLICVMQEGQIVEQGTHEE LLGRGGIYAHLYQIQFKE >gi|228308350|gb|ACLR01000111.1| GENE 18 23275 - 25209 2075 644 aa, chain - ## HITS:1 COG:all4183 KEGG:ns NR:ns ## COG: all4183 COG0488 # Protein_GI_number: 17231675 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Nostoc sp. PCC 7120 # 1 536 1 535 564 379 41.0 1e-104 MISVQDLTVDFGKQLLFDSINFVISKGERVALVGHNGAGKSTLMKILVGIEQPTSGTVSR PRDLSIGYLPQVKELVDHTTLRAEVEEVFKDMQSLNDQYDRLSEELATRTDYDSPEYLEL IERHGHLTDLIQMHHPSQYLAEMERTLLGLGFERSDFDRPTREFSGGWRMRIELAKVLLS NPDLLLLDEPTNHLDIESIDWLEHFLIARGVTLLLVSHDRTFLDNVTNRTIEIELGRIYD YKTSYSHYVTLREERLEQQKRAYENQQKKIQDIESFVERFRYKPTKSAQVQSRLKQLDKI EEIELDEIDTRHINFTFPMAGRSGDYPVIIEDLDKSYGALSVLRNVSMTIKRGEKVAFVG KNGSGKSTLMRCIMGQEEYTGKLQIGHGVEIAYFSQNRAQELPANQTIRDAIDSLARGDM RLHINDMLGAFLFGGEVADKPISVLSGGERARVAIMQMLLEPANLLILDEPTNHLDIRTK EILKRAIAAFPGTVIVVSHDRYFLSGLVDRIFSFSHGTVRECMNGLDGYLATLHEELSQS PTANSQQPTASAQQPKPKAQPLDYQQQKEQQKKLRTLRRTSETLGEQVSKLREQQAELEK KIETSPSPQLIEQYTLVNGQLQEVTKQWEDAEFALMEYEEEIQQ >gi|228308350|gb|ACLR01000111.1| GENE 19 25209 - 27188 1984 659 aa, chain - ## HITS:1 COG:all0889 KEGG:ns NR:ns ## COG: all0889 COG0457 # Protein_GI_number: 17228384 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Nostoc sp. PCC 7120 # 41 541 50 560 605 120 25.0 1e-26 MRPLLRSLSLLLCMLCVWSATLWSQIDTERVMTIGRNAIGFKDFVVAIEHFNQVIEVSPT MAEPYYYRAFAKLMLGDYAGAERDATLCLERNPFLSRAYMVRGAARHNQQHYAEAATDYA QALKITPDDFYLSFNLAGSLYGAEQYERADSAALALTQRHPKEARGYFLAAEIALRRQDT VAAEERIAEGLAIDSLSAAPYRMLSAIAYLRGDNKGALRYHDKSIEQDPNQASDYINRGL TRYKLKEYRGAMEDYNQALLLTPHDAVARHNRALLRIEVGDLQGAREDLLEVVRLQPTNL TAHFNLALVQTQTGRYRDAIETLDYILGRRPEFISGYYQRSEVKRLLGDAAGADRDYWFA YKLERGQVKAPKPTIADSTGSSVASDELYALDHHAELQSASSDATSASLSAGSNSLRGSI QEQASSSEACPAYELTYFVQKSHDKLLPRTNFSAELEAYNERTGYQPRLLLAVGAQSLDS TQLHVVLEDIARLQARDTEQTADWHLRMGIDKLLLRDIGEAISQFNASLDLAPQQPLALL VLSTARLMQAETLTEPKQQKLMYNLAMRELTTAISHAPQIGYLYYNRAHLHQTLGHTDQA IADYTKAIELLPQAGEAYYNRALLLEQQGQHEQAIDDLSRAGELGIYQAYSLIHTIQTR >gi|228308350|gb|ACLR01000111.1| GENE 20 27194 - 27760 698 188 aa, chain - ## HITS:1 COG:aq_579 KEGG:ns NR:ns ## COG: aq_579 COG0242 # Protein_GI_number: 15606030 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Aquifex aeolicus # 7 175 5 168 169 119 40.0 4e-27 MAKTLPIYLYGQPVLRNMSEDITPDYPNLSELIADMWQTMYESDGIGLAAPQIGRNIRLQ VIDATPLEDEYPECATLKLVMINAHMQSLSEDTCSEAEGCLSLPGINERVVRPKSIVVDY MNEQFEPQRLELSGYAARVVQHEYDHLDGKLFVDHISAMRKRLIKKKLQHIVDGRIRVGY PVMRNTIH >gi|228308350|gb|ACLR01000111.1| GENE 21 27786 - 28211 639 141 aa, chain - ## HITS:1 COG:BS_yrrK KEGG:ns NR:ns ## COG: BS_yrrK COG0816 # Protein_GI_number: 16079793 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Bacillus subtilis # 3 137 2 137 138 71 31.0 6e-13 MARILAIDYGTKRTGLAVTDSLQITPGALDTVPTHQLLNYLADYLGREEVETIVLGKPTQ MDATPSATWQAIQALAKKLQHLYPQIRLEYVDERFTSVLAQQTIREAGIGKQRRRQDKGL VDRVSATIILQSYLESLRMLH >gi|228308350|gb|ACLR01000111.1| GENE 22 28227 - 29849 2101 540 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 538 1 538 540 657 58.0 0 MIIVNDLTIQFGKRVLFADVNLKFTPGNCYGIIGANGAGKSTMLRMISGELEPTRGTVTF GPDERLSVLSQDHFAFDEYTVIDTVLMGHDKLWKIMKEKDAIYAKEDFSDEDGVKAAELE EQFANLDGWNAESEAAALLSGLGIKEDLHYRLMGDISGKQKVRVLLARCLFGKPDNLLLD EPTNDLDLETVSWLEDYLAETESTVLVVSHDRHFLDAVSTHTVDIDFGKVRLFAGNYSYW YESSQLALRQQQQQNKKLEEKKKELEEFIRRFSANVAKSKQTTSRKKMLERLDINEIEPS SRRYPGILFQPDREPGNKVLEVNDLSAVTDEGEVLFKGLTFNVERNDKIVFISHDPRAMT ALFEIINGNRKAQQGSYEWGQTITTAYLPLDNSAYFDTDMTILDWLGQFAKDTNDVYLKG FLGRMLFSGEEVNKRASVLSGGEKMRCMISRMMLPPGANVLILDTPTNHLDLESIQAFNN TLISFKGNVLFSSHDHEFIRTVANRVIELTPNGIIDRIINYDDYISDPKVAELREKYYNA >gi|228308350|gb|ACLR01000111.1| GENE 23 30286 - 32205 1295 639 aa, chain - ## HITS:1 COG:ZydcP KEGG:ns NR:ns ## COG: ZydcP COG0826 # Protein_GI_number: 15801708 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 EDL933 # 1 625 25 630 667 369 38.0 1e-102 MAPASSLEGGLVALSAGADAVYVGAPQYGARSAVGVSLEDIRQLCAAAHAYAARVYVALN TILTDSQLAHAVELAHQLYEAGADALIIQDLGLLTQDLPPIPLHASTQCHNHSLEQLQML SDLGFEQAVLPREWSCQDIAAVRDKTPLRLEAFVHGALCVSYSGRCFISEALSQRSANRG QCAQYCRMTYDLVDAQGQKLRQGEHLLSLRDLNRTEIIEEMIDAGVSSFKVEGRLKALPY VRNVIAHYRKVLDEILTRRSDQLRRPSWGTTEYTFTPLPEATFARPFTTYNTPLWAPIPT DSITPYSSKSLGQPIGTVTRSRGRELEIALLSDDIELANGDGVVAYTIDKKLVGAQINQV MPAKRAGSYRLRLSQALELPQGATLWRNLNHLLEAQLLRPDASTRTMPVTLHLEATPDQL TLEMQLSEAPEMSVTRSRAVTLEPAQRDNTEHIERTLRKLGDTPYRAKRVILSLDGLFVP PSLVAELRRELSEELQRQCLAKALQRRDAIGKPLQQKRIDRLHTSDPTARQRYGLPDTLD FTYNVANESARKLYRQLGVSGSIAPALEVERPEGAIPVMFTRHCLLHQLGYCTRTGRKPP FALPLYLVRGRDRLRIAHDCRHCMMTLWLDPQGNQPLPR >gi|228308350|gb|ACLR01000111.1| GENE 24 32245 - 32904 872 219 aa, chain - ## HITS:1 COG:MTH1114 KEGG:ns NR:ns ## COG: MTH1114 COG0035 # Protein_GI_number: 15679125 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Methanothermobacter thermautotrophicus # 17 216 20 211 215 128 39.0 6e-30 MQVYNLSERPSLLTHFISEIRDREIQRDPLRFRANIERIGHIMAYELSKHLHYQTRPVET PLGTAPTAVLDEQLVVATILRAGLPLHHGFLDFFDRAENAFISAYRKVKDDEDFDIHVEY VAAPDLTDKELLLVDPMLATGGSMHLSWQALLKSCGTPRHTHMVAIVASQQAIDFLQSQF DDKAPVTLWVGVIDPALNEHAYIVPGLGDAGDLAFGGKL >gi|228308350|gb|ACLR01000111.1| GENE 25 32903 - 33760 894 285 aa, chain + ## HITS:1 COG:no KEGG:BDI_1856 NR:ns ## KEGG: BDI_1856 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 53 285 4 233 233 206 47.0 6e-52 MSFTMVWVLKSGKYTISLSDRRLNHVANYYFVKQVISTYHTYSLGRRYWLVGLLLLLLGV PMATTLSAQTARPMTRPYADHRRFNWGFHVGAHVEDLIIDNLGPTEGEAQTLYAAVPSYS PGFSVGVIANYNPHIDWSIRVLPTLHFGEQRLLFKSWGETSEETFEFIPMRTSQIELPLL VKYSSVRFNDTRPYLVGGVYGLLNMGQKKGAPLQFAPLSAGWTFGVGCDIYLRYFKLSPE LRFDFGVTDLIRHHRPDLDDGASLRYTNALRRGTGRMIMLTFCFE >gi|228308350|gb|ACLR01000111.1| GENE 26 33873 - 34391 513 172 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470012|ref|ZP_04054928.1| ## NR: gi|228470012|ref|ZP_04054928.1| hypothetical protein PORUE0001_1133 [Porphyromonas uenonis 60-3] # 1 172 1 172 172 274 100.0 1e-72 MTNMKRLIALLAVVALVLAGCTSKKAESDETTAAADSTQEVTTQEETTPRVDPEEAKALI NKLYTELYVNDNHIGSDVVSELLGDKLNAKLNEKDGEMPVIDYDPFINAQDWDTKRVMSS LTITELSEDLYQVEVEPLKGSKETIQLTVGYDDKGVLKILDIPSNPDISVLK >gi|228308350|gb|ACLR01000111.1| GENE 27 34793 - 35074 467 93 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228469970|ref|ZP_04054886.1| ribosomal protein S15 [Porphyromonas uenonis 60-3] # 1 93 1 93 93 184 100 1e-45 MYLDSTKKQEIFAKYGTSAKDTGSVESQVALFTYRIQHLTEHLKENKKDFSTSRSLKMLV GKRRRLLDYLAKKDIERYRKLIAELGIRHTTKF >gi|228308350|gb|ACLR01000111.1| GENE 28 35223 - 36239 954 338 aa, chain - ## HITS:1 COG:no KEGG:BT_1831 NR:ns ## KEGG: BT_1831 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 338 7 348 348 355 51.0 2e-96 MKNIMTFLPLALTLLLACQPSTDSSAEVTNMDSIIATDTVVADSQPELTVEQIVIDRELA FDKYTLEDSYQYQKETRTIQWNKIREQLLRIEQLQATPHRWGVLQNYKNLNGEAPLTKVW SRDSYKLVSDSLGVERYQAVPLYASTDTLTPELYGRDGTLIAMTDTQGSNFWQGRTESPE ADWYVPKRYVKLLKPDVTFSHVVVVDRKNQYIITLERQAPAHYLVRSINPATTGRHKPPH AKETPLGIFLLQEKKPKMFYTSDGSSRIAGFAPWASRFTCGAYIHGVPVNNPKGKIVEYS HSLGTTPRSHMCVRNASSHAKFVYDNCPTLATLIVVIE >gi|228308350|gb|ACLR01000111.1| GENE 29 36256 - 36924 930 222 aa, chain - ## HITS:1 COG:BMEI1778 KEGG:ns NR:ns ## COG: BMEI1778 COG2860 # Protein_GI_number: 17988061 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Brucella melitensis # 9 217 11 218 237 125 35.0 8e-29 MLDQILGFDHSALTWSEVTVTSILDFVGTFAFAISGIRLASTKQMDWFGAYVLGVTTAVG GGTLRDLFLGATPFWMLQPSYLIITFVALLYVYIFRKILIRTAPTVFVFDAIGLGLFMVV GVDKTLAMGFPSWVAVIMGTVTGSFGGLLRDIILNVTPLICRQDIYALACIAGGVIYTLM LHFVPIDTVYAQLISAGMVILIRILAAHYHWHLPQLKGVDAS >gi|228308350|gb|ACLR01000111.1| GENE 30 36939 - 37574 712 211 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 1 209 1 209 211 219 48.0 2e-57 MKHKPIIIGVAGGTASGKSTLVRRLQETFVDEDVVVLSHDYYYKAHDELPLEQRAKLNYD HPDAFDTKLMCEQISQLCDGHSVERPVYSFVNHNRIPETVPIDPPCVLIIDGILIFENEE LRDLMDVKIYVQTDDDVRLARRIQRDVKERGRSVDSVIEQYLTTVKPMHQQFVEPSRRYA DLIIPEGGFNSVAVRLLIDNVRSLLSSRAKH >gi|228308350|gb|ACLR01000111.1| GENE 31 37593 - 38648 1164 351 aa, chain - ## HITS:1 COG:CAC2321 KEGG:ns NR:ns ## COG: CAC2321 COG1216 # Protein_GI_number: 15895588 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Clostridium acetobutylicum # 3 259 6 260 298 156 34.0 5e-38 MLLSVILVNYKVPQLTIEAVRSVLASCRLIEGETEVIVLDNASGDDSMDRLRTAFGGEPK VKLLESPTNGGFARGNNQAIAEASGEYLLLLNPDTLVGESTLSYCLAFLRTHPEAGAIGP RLINQSGVMHPESKRGVPTLWHSFCRLTRLYRLAPRSAWLNGYYQGHLSPDEVQQVPVLT GAFLMMRRVLYQAVGGLDERYFMYGEDIDLCYTIERAGYHNYYLPTPVLHYKGESEQAAD RVRYEENFYGAMRLFYLKHQGRSWWSRRVTMPLVLAAINLQRRLARCRRKAKASLPPSHT VSLTLAELVADVDAFPEETHLQLSLAGASYDSLLETMERCATRRYLFIVNA >gi|228308350|gb|ACLR01000111.1| GENE 32 38667 - 39977 725 436 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 4 432 7 414 418 283 36 1e-75 MSHSSLISELKARGMIHNIMPGTEEQLTEHLTTAYVGFDPTADSLHIGHLVGVMMLRHLQ RAGHKPIALLGGATGMIGDPSMKSQERNLLDMDTLRHNQECIGRQLGHFLDFESDAPNKA LLLNNYDWMKDYSFLNFIRDIGKHITVNYMMAKDSVKRRLEANAEAGLSFTEFSYQLLQG YDYLHLYREYGCRVQMGGSDQWGNITTGTELIRRIDGGEAFGVTCPLIKKADGTKFGKTE KGNVWLDRRYTSPYTFCQFWLNVSDEDAERFVKIFTSIPLEEIDSLIERHRQAPHERLLQ HTLAEELTVMVHGREDYEQSMSAGQILFGNNTHDQLRQMPEELLEEVMAGVPHYNVGRTL LEQAGGVKLLDLLVEHAPIFKSKGELRKLIDSNGISLNKEKVADQDCVVTTDDLIAGRYL LVQRGKKNYYLIVVSA >gi|228308350|gb|ACLR01000111.1| GENE 33 40299 - 41759 1851 486 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470013|ref|ZP_04054929.1| ## NR: gi|228470013|ref|ZP_04054929.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 486 1 486 486 977 100.0 0 MKRITSILLLLIAGLCTFTSCSECNSITEPDTPEQPQQPQKISQWMLPIERYGITLNEVA QIEKERGNKVERSNELMTLTATPQDTKAVREIVYYFDKSSHYQVARVQFASQESAKQFID EYLLNNGFVKSGLRTAKASEEIYVSAPRGSRVSSVVLVDGEQTEPIFWWANNDNKKTNWL RVDPLQDKATGIWTPLLPYGATLEMVQLFEARMGHTFDAEASKPDKGVFKFKTGHEIYTE VTYWLDLKTNHFLEESKISCDTLHRPTPEQLDAYLRSQGFKPTGLKDKEGNPIYYDKSIK LIANVDMNIPKDAKAKETFRPGIQYYTNSQIEQLLPYEEVDFPMPLFGFEKDKLEDVMKK YAKEDYTATVLPMLANDMPFPGVQTRSKYFPTIILLPADKDENLYGAAMVICTDLKALRS PSLIDRLERRGFVYDKKRSISLPTYINEQEGVMVQIDEGTVITGLSFSPIEDFGSSSASL ARRLKR >gi|228308350|gb|ACLR01000111.1| GENE 34 42141 - 43184 694 347 aa, chain + ## HITS:1 COG:STM3755 KEGG:ns NR:ns ## COG: STM3755 COG3943 # Protein_GI_number: 16767039 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Salmonella typhimurium LT2 # 7 315 15 331 345 265 46.0 8e-71 MDEQRIIIYNSDDGRSKVTLYAQDGSVWLNQSQLAELFDTSKQSISYHITNILADKELDA NSVVKDYLTTASDGKQYNVAFYSLEMILAIGFRVRSRRGTQFRQWAMRNLREYMVKGFVI DDERLKNPDGRPDYFDELLERIREIRASEKRFYQKVRDLLALSSDYDASDKKTQMFFAEI QNKLIYAVTHQTAAELILSRADASKPNMALTSWQGNVVRKQDILIAKNYLRQEEIDQLNR LTTLFLDSAELRVKERRDLTLNYWRSNVDALLQFQGKDLLLGKGAVTHKQMELQVRKVYA QFDQRRKLESLHEEELREAQELKQLEENVIARTKEDVSSPQRDNTLN >gi|228308350|gb|ACLR01000111.1| GENE 35 43349 - 43543 229 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHSDTFQSPRQHTSEEIANASVENENPPRRNKKNLRNFEIFLPKFHFILPNFYFPVPWGN FVSS >gi|228308350|gb|ACLR01000111.1| GENE 36 43769 - 44335 831 188 aa, chain + ## HITS:1 COG:DR2464 KEGG:ns NR:ns ## COG: DR2464 COG1047 # Protein_GI_number: 15807451 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Deinococcus radiodurans # 1 168 1 157 158 79 32.0 3e-15 MKITKDSYVTCEYELYTGSGKEEIVEKATPEAPLALIVGAGFLLEAFEKQLMGLEAGDKF DFTLTPEEAYGEVSDAYVLELEKELFKNDKGEFHSDVVYEGNAVPMLDNQGNQLVGIVEK VGDDTVTMNFNHPLAGQTLHFVGSVLEARPATEEDRQRLTAQFSGHAGGCCGDDHDHEGG CSCCSGCH >gi|228308350|gb|ACLR01000111.1| GENE 37 44345 - 45433 815 362 aa, chain + ## HITS:1 COG:sll1747 KEGG:ns NR:ns ## COG: sll1747 COG0082 # Protein_GI_number: 16330007 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Synechocystis # 2 358 3 353 362 282 43.0 6e-76 MNSFGRKLRLTTFGESHGVALGGVLDGMPAGFLIDREAVQRFVDLRRPGYSRSTTKRREP DEVVWLSGLTDEGRTLGSPIAFVIQNKDARSQDYATATSLGGKPFRANHADLTYWLKYGL EPQPGGGRSSGRETVARVVAGAVAQQWLEQVWGVTVQAFIQQVGALSLAGDYTTYPLEHT YDRLCYCPDATLDEEIAAYLTKVRTDRDSVGGVVGCVVRGMPAGVGEPIFDRIPALLSYA VMSIPGSRAFAFGDGFDLAGLRGSAVLDELLAMSDEGTVTFGSNHNGGALGGITTGQDLN LSVAFKPTPTIARPQQTLTTEGECVTLTFTGRHDPCIALRAVPVVQSMVALTLADLLVAL GD >gi|228308350|gb|ACLR01000111.1| GENE 38 45410 - 46783 1184 457 aa, chain - ## HITS:1 COG:aq_2015 KEGG:ns NR:ns ## COG: aq_2015 COG1232 # Protein_GI_number: 15607001 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Aquifex aeolicus # 1 453 3 430 436 210 33.0 6e-54 MKQTIVIGAGITGLTTALYLRKAGLPILVLEEAERAGGQIRTLREGGYTFETGPNTGAIS FPEVAELFALLPSGYEAATPEGNCRYIYKKGKLHRLPSGPWSGLTTPLFTLGDKFRLLGE PWRKKGNDPYESVGSLARRRLGKSFLQYAVDPFIGGIYAGDPMKLETRHALPKLYNLEQE YGSFIRGAMAKAKEPKSDRDRLATKEVYSAQHGLETMIHEMVEQIGPDNIRTGASVTSVR QGAAGDWLVTYQQGGELHEVPAERVVSTVGAHTLASFLGETLPDELLSPITSLYYAPIVE VAVGFDRKVSNYRGFGALMPSSEPVDILGVLFPSDCFADRTPTAEGVLYSIFMGGTRYPD LIDQDDETVRALALRDLYKVLRIDPRIAPDMVHISRHRHAIPQYGADSEKRCAAIAEIER RYPGLIIAGNCRDGIGMANRITQATQVAQQLIAESDQ >gi|228308350|gb|ACLR01000111.1| GENE 39 46796 - 48109 1574 437 aa, chain - ## HITS:1 COG:PM1900 KEGG:ns NR:ns ## COG: PM1900 COG0161 # Protein_GI_number: 15603765 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Pasteurella multocida # 9 435 39 465 468 575 63.0 1e-164 MKPYDPTVQQALAWDRKHLWHPYTSTENPLPVYPVSHAEGVRIYLADGTELIDGMSSWWC AVHGYNHPALNAAVETQIGKMSHVMFGGLTHQPAIALGEELLKMLPEGFDWIFYADSGSV AVEVALKMAIQYQQSLGETQRDHFVTIRRGYHGDTWHAMSVCDPVTGMHSIFGTALPQQH FLAPPSVKWGEPWRDDAMEPLRQVLAQHGEQIAALILEPIVQGAGGMYFYHPNYLVEARK LCDQYGVLLIFDEIATGFGRTGRMFAMEHAGVLPDIVTLGKALTGGYMTLSAIVTTQRVA ETVCRGEAGCFMHGPTFMANPLACSVALASLQLLQREPTLERVARIEAQLKQELAPASAF AGVTEVRVLGTIGVIELDEPVDMAFMQRRFVELGIWVRPFGRLCYIMPPYIIQPDDLSRL TAGLLTVVQEMVARQSR >gi|228308350|gb|ACLR01000111.1| GENE 40 48113 - 49123 1058 336 aa, chain - ## HITS:1 COG:FN1000 KEGG:ns NR:ns ## COG: FN1000 COG0502 # Protein_GI_number: 19704335 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Fusobacterium nucleatum # 16 322 45 358 360 261 42.0 1e-69 MLMRPLSDIVTSLCSSEPVEVTQEEALDLAQQADSEALYEAAHRVTRHCMGDAFDTCSII NVKSGHCSEDCHWCAQSAHYHTQAEAYPLLDVEPCVAESRANRQAGIGRIALVASGRGQS DREIERIAQHYEAMRQASDIKLCASMGLLTKEQLRRLHEAGVTTYHCNMESAPSHFPKLC TTHTQVEKEQTIRWAREVGLQVCSGGIIGMGETMAQRIEFACYLRSLAIRSIPINILQPI AGTPLAKEPRLTDEEYLRTVALFRLINPTAFLRFSGGRLRLSPEVMRQAMYIGINSAITG DMLTTSGMQAREDMQLIAEMGYRNTNEKDWRTEETA >gi|228308350|gb|ACLR01000111.1| GENE 41 49261 - 51300 2113 679 aa, chain - ## HITS:1 COG:CAC0751 KEGG:ns NR:ns ## COG: CAC0751 COG3104 # Protein_GI_number: 15894038 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Clostridium acetobutylicum # 2 171 21 241 521 107 36.0 6e-23 MENKHPKGLIVLALTNMGERFGYYTMLAILTLYLQAKFGFSSATTSMLYGTFLALVYFLP IFGGIIADKWLGYGKTIFAGVTIMFAGYLLLGLPFGSGSAGITIMLLSLFLIAAGTGLFK GNLQALVGKIYDDPRFSKGRDMAFSIFYMFINIGAFFAPSMGNWITNNVLAKENYFYDAT IPANYNKLNDETVDADAFIAELQAKHPEYAQLTAEEQSQKVTAAKKKAGVMFPEDEAQVL HDLRIAALRQYTKAGLVSDPQLQITDADHEILISRNAKDEPAKFAINERVAMLQIPAEWT ADLNNKLNAERKDRGEAAQELSFERAFGEHYVSTTLSQSYSLSFFVACISLIISILIFVL CRKTWKAADVTVKQAKAMAAQGDSSAHVVEMSKAEVKERLIALGLVFFVVIFFWMAFHQN GLTMTFFARDYTVSRVDAAGYMPFSLLMLIPFICFMYGIYLSTFGLLGGKKNVKTGLILV VLGIAGLAGGYFIDIKPIADALRNITPQIFQQFNPFFIILLTPVTVGLFGYLANRGKEPS APRKIGIGMLLAAVGFCVLLIPTIMYALPAPAHIHGTSDTLVSPNWLIGTYFVLTLAELF LSPMGLSFVSKVAPPQYAGLMQGGWLAATAIGNLLVGVMGSLWDKMPMGWFWGVLIICCL LSAAFIFAVMKRLERATAD >gi|228308350|gb|ACLR01000111.1| GENE 42 51340 - 52449 991 369 aa, chain - ## HITS:1 COG:no KEGG:PG2083 NR:ns ## KEGG: PG2083 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 23 364 21 361 365 161 32.0 3e-38 MHRHKTPSRLTLWALAMTMVWLTSCASRQATVTPYVADDQPTSGVVYYLPKTQLRIHFVL SEEQFEPGPLVAYASRYLGENYPTQPATRYQIERVAMHAHGVPDKAQGFLIESVALPSVE QLASLTPDGLLYSLHGKAYQPATTDYLADYPKAVASQEASQALPQEYALATSRAKQAEVA ANRLFELRERRVELLSGQVETMPCDGPALKMVLDGLDKELAALQALFAGRTTRRYYEEVV DVPITEPATQQVVARFAPQYGLVDKEDLSGAPIYIDVKALKRPAPLSESELHKLIKSKAL RYIEPGRARVSLQLPERSQAITLELSVAQWGRPALLEHKLGADKLGQLPYTIYFDLTSGS IELIELPRQ >gi|228308350|gb|ACLR01000111.1| GENE 43 53035 - 54963 2470 642 aa, chain + ## HITS:1 COG:no KEGG:TDE0741 NR:ns ## KEGG: TDE0741 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 345 641 89 368 657 66 26.0 3e-09 MTQRLHYLLLVLTALLLGQAVCAAQAPAEGAQIELIVPKGTQYVNFEVSYLDGAKASDID FGDGIVKQYEGQTQLINHKYATKITEETVIKIDATKLTQLCNAEQNYRDLAPGFSGFGKI VAPELQVLRLARNNYTLRDSREKMIDLSGCPKLEEVVLHNVPGIKLPTEHAALKKVSIIS PANTLDRNYAILSNKHLDLSGYTVLSEVNLPFQPNLETVNLTGAIALTKLILNQGSLYKI DGIKELAALTEVNLSGNYLPYSSLPLKRPALAKFDYRQEGVRLAPECVDKNTIHLADMLN VKDADGVAQPTTIKQVKQLNKNGRTLTEGQDYIRKGSDLIILKSGYLLGKDTLDAIQLSI KATNAYYPDYYKSSNGDPELILDITREGAVYPQEKQKLTFTAGEGGLIEAMAGDAKLTSG AEVEPGTPLTFTATPHEGYIITEWRVNDKVRMTLGLNKKPVTDATIEVNMYSEPMTVTVT FANAADNYPVTFSKEGEGNLIATVEGKQFTTGTFFAKGTKVLFEAKAFTNHIVKEWQVNG KTIPAGEEQASYTLTVGKKSDVKVVFAVHNAIDALQGTRYQIAQTAQTLTVLGATAGETI RLYTLTGTPIATATGDATLTISQLPAGIYLLQIGNDWVKVTL >gi|228308350|gb|ACLR01000111.1| GENE 44 55201 - 55464 454 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470010|ref|ZP_04054926.1| ribosomal protein L31 [Porphyromonas uenonis 60-3] # 1 87 1 87 87 179 100 3e-44 MKKDLHPENYRPVAFKDMSNDEVFITKSTANAKETIEIDGETYPLIKIEISNTSHPFYTG KAKLVDTAGRVDKFMSRYGNRGKKADK >gi|228308350|gb|ACLR01000111.1| GENE 45 56106 - 57461 1638 451 aa, chain + ## HITS:1 COG:YPO3240 KEGG:ns NR:ns ## COG: YPO3240 COG1726 # Protein_GI_number: 16123399 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA # Organism: Yersinia pestis # 5 449 2 446 447 247 34.0 3e-65 MSRTITIKRGLDLKLQGTAPRTLLSTPSSGETSTYAWVPDDLPGLTPKMKVHVGDHVEAG DPILYDKQYPDIWVTAPVSGELVAINRGAKRKIMSVEIRPDETQTQHTFSVDGLLEGDAS QLKTLLLQSGLWTLIRQRPYDRLADPAIAPRDIFVTAHLTAPLAPEIDYLLEGREEELRI GLRALARLTEGKVYVGVAHDCPLTLPAEVEAVEVRGPHPAGNVGVLIDHLAPINKGETVW TLRATDVVLIGRLLMTGHVDYTRRIAITGSHAAEHGYMDLLPGCRIESLGKLAQESCKTR VIAGDVLTGTQLTEERPFLPMSCDQITVIPDGSDRDELLGWAMPRLGDFSQSRTYLSWLM PRKRYTLDARLKGGKRAMIMSHELQSVFPLDIYAEYLLKAIIAFDIDKMEELGIYEVAPE DFALCEFVDTSKMELQRIVRQGLDQLYKEMN >gi|228308350|gb|ACLR01000111.1| GENE 46 57533 - 58756 1561 407 aa, chain + ## HITS:1 COG:YPO3239 KEGG:ns NR:ns ## COG: YPO3239 COG1805 # Protein_GI_number: 16123398 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB # Organism: Yersinia pestis # 1 402 1 413 413 289 43.0 7e-78 MSLKDRFNKRRSLFEPGGKLHAFHSLFDGFETFLYVPHTTAAPRGGVHVHDAIDSKRVMS TVVLALVPALLFGMYNVGLQHFIAIGQTAGFWSMFWFGFLAVLPKIVVSYVVGLGIEFAV AQWKHEEIQEGYLVTGMLVPMIVPVDTPLWMIAVAVAMSVVFAKEVFGGTGYNIFNVALV TRAILFFAYPAAMTGDKVFVRTEPIFGFGGGGDMATAAVDGFSGATPLGQVATAGDTLPT IVNTMGEPSTLWDAFWGFIPGSIGEVSTFAILLGAILLIWTGVASYKVIVSGVVGAALMT LLFNAIGTTAAMQLDVAHHLLYGGFAFGLVFMATDPVTSARTETGKWIYGLLVGVMCVFI RVLNPGYPEGMMLAILLMNVFAPLIDYVVVNNNISKRKKRWEMASKH >gi|228308350|gb|ACLR01000111.1| GENE 47 58771 - 59520 1043 249 aa, chain + ## HITS:1 COG:VC2293 KEGG:ns NR:ns ## COG: VC2293 COG2869 # Protein_GI_number: 15642291 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC # Organism: Vibrio cholerae # 2 241 4 252 257 121 31.0 1e-27 MNRDSNSYTILYAAIMVVVVAIALALTAVALRKPQQENERIDKMQQILRAVHLEPTKDQV IPTYTKVIKQELLVNGQGEVIATFEGDQIAQNEAFQMNTANQFKLRQQDHALGLPVYVAE VDGQQLYIFPMDGAGLWGAIWGFLAVQADGSTVYGADFSHAGETPGLGAEIATKHFSQEF VGKQLYRDEQFKSIAVVKHGRSLDDQDYVDGISGGTLTSNGVNNMLENSIKEYLPYIEQI RGAQAVAAE >gi|228308350|gb|ACLR01000111.1| GENE 48 59545 - 60168 942 207 aa, chain + ## HITS:1 COG:PA2996 KEGG:ns NR:ns ## COG: PA2996 COG1347 # Protein_GI_number: 15598192 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD # Organism: Pseudomonas aeruginosa # 7 206 9 208 224 204 52.0 1e-52 MSKISNKEVLLGPLNKNNPVTVQVLGICSALAVTAQLKPALVMALSVTVVVAFANVIISL LRNTIPNRIRIIVQLVVVAALVTIVNEILKAYVYDVSKELSVYIGLIITNCILMGRLEAF ALAHGPKASFLDGIGNGLGYGLVLVIIGFVRELLGRGSLLGFQIIPQACYDMGYVNHGLM IMPPMALIVLACIVWIQRSKLKDLQEK >gi|228308350|gb|ACLR01000111.1| GENE 49 60220 - 60834 743 204 aa, chain + ## HITS:1 COG:PA2995 KEGG:ns NR:ns ## COG: PA2995 COG2209 # Protein_GI_number: 15598191 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE # Organism: Pseudomonas aeruginosa # 3 204 4 202 202 195 55.0 5e-50 MDYLSLFFKSIFVDNMIFAYYLGMCSYLAVSKDVKTSLGLGLAVTFILTCTLPINYLLET YVFKAGALSWLGAEFASVDLSFLSLIVFIAVIASFTQLVEMVVERYSPSLYNSLGIFLPL IAVNCAILGGSLFMQQRDFINTGMATVYGLGSGIGWMLAIVGLAAIRERLAYSNIPKPLR GFGITLIVTGLMGIAFLSFSGVKL >gi|228308350|gb|ACLR01000111.1| GENE 50 60847 - 62094 1667 415 aa, chain + ## HITS:1 COG:PA2994 KEGG:ns NR:ns ## COG: PA2994 COG2871 # Protein_GI_number: 15598190 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF # Organism: Pseudomonas aeruginosa # 8 415 6 406 407 486 53.0 1e-137 MDQMTLIIVSSVAVFLLVVLLLVVVLLVAKSKLIPSGNVHINVNDVKDLEVPMGGTLLNT LQSQGIFLSSACGGGGSCGQCRCRVVEGGGEILATEKGFFSRKEQMAHWRLGCQTKVKED LKVIVPESVFGVKEWECEVVSNRNVATFIKEFVVKLPEGEHMDFKSGSYAQIKIPKYEVK YSDYVVEEQFRSDWDKFNMWSLTAKNTEDTVRAYSMANYPAEGNIITLNVRIATPPMDRV THTWQKVPAGIASSYIFSLKPGDKVTMSGPYGDFHIHEDSDAEMLYIGGGAGMAPLRAQL LHLFLTEHTTRKVSFWYGARSRSEIFYEEDFRAIEREFPNFSFHIALSAPLPEDNWTGLT GFIHQAIYDNYLKDHEAPEDIEYYMCGPGPMSAAAIAMLDNLGVPPEQINFDNFG >gi|228308350|gb|ACLR01000111.1| GENE 51 62342 - 62953 796 203 aa, chain + ## HITS:1 COG:no KEGG:PGN_0129 NR:ns ## KEGG: PGN_0129 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 20 203 19 197 197 192 52.0 8e-48 MIRKIVITIALVLTFGLAATAQRVALKHNFAYDALLTPNLSLEFAMGNKFTFDTQFGWNS FVFNLDASKPNYSTTKWAHWMAQPELRYWFCDVFNGWFLGLHGHVGQMNVGGVNIPYPLI LENKESVMKDHRYQGWFYGGGLSVGYQWVLSTRSSLEFSLGAGYARILYDKFPCTRCGTK VDEGKANYVGPTKATISYVFFFK >gi|228308350|gb|ACLR01000111.1| GENE 52 62992 - 64431 1982 479 aa, chain + ## HITS:1 COG:no KEGG:BDI_2595 NR:ns ## KEGG: BDI_2595 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 8 434 5 417 482 187 29.0 9e-46 MNIKISRLLILLSTLLLVGGTLCAQQFSKAEETKTIALSAEHHTVTRDIARNILRIDLDV APYAYVRAQQLLRITPVYVSADRSKEIRFNKIYVAGNSRYKILKRQHDLYNSDALGKEVY SRPEGSVYAQGTKDLPHMVYERPFEFWMEQGHVELEIEVFSCGNCPKGTRLAQGGPQSIP VFGSKDYKYDYIVPAATAFKEYAESFDAKIQFVVDKHDLLRDYKGNAQELARLGDFVRRA TKIEGAELQAINIRGYASPEGGFEHNKALSERRTKTLDDYVKRTYPNLVNRVEVVAEGMG EDWDGLRKLVDASDMPERQTILDIIDKYNTDTEREADIKALDGGKVYRNLLENDYPKLRR TTFTMSYRVRPFEVSELAHIYSTNPKLLSLKELYTLAQQVIARGESPVAIYRAGYEQNAS DPVARLNYANALLEYDKNANEAYKVLSTIQSDSRAKLPTAIALDMMGRKAEAETLYFKK >gi|228308350|gb|ACLR01000111.1| GENE 53 64771 - 64947 149 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLRKKQIKVPKNFFIPPWRIRNLYREVFDFLGGVGRVALIGCQLLAVGERETSELSE Prediction of potential genes in microbial genomes Time: Fri May 27 09:21:54 2011 Seq name: gi|228308344|gb|ACLR01000112.1| Porphyromonas uenonis 60-3 deg1118640599665, whole genome shotgun sequence Length of sequence - 1249 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 65 - 682 635 ## PG1475 conjugative transposon protein TraN 2 1 Op 2 . + CDS 682 - 1249 340 ## PG1474 conjugative transposon protein TraO Predicted protein(s) >gi|228308344|gb|ACLR01000112.1| GENE 1 65 - 682 635 205 aa, chain + ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 205 110 341 341 289 62.0 4e-77 MSVICEDGSFYAFNVKYADEPEKLSMEMKDFLAPTEGRLPSNRADIYFKELGSESPILVK LIMKSIYQNDKRNQACWAKQFGMRFYSWLYAHNGLLYFHVRMDNESNMPYAVDFITFKVV DKKVAKHTAIQERMLQPLRAFHQVMWIGAGRSERIVFALEQFTLSEDKQLEVTLYERNGS RTLTFYVEPEDLLLTKKIDNLKLKW >gi|228308344|gb|ACLR01000112.1| GENE 2 682 - 1249 340 189 aa, chain + ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 1 189 3 188 192 218 61.0 1e-55 MKRWLSMMVCVMVAMVAAMPSYAQRLIPRQNSVELVGSIPIIKGERLCAKESFGVGLAFA HYFKRANYAFLLAEYEQQGLTYRSYNVPLRDALLHFGYMHPILSDRGKNLFGYLGLSALC GYEELNEDKRLLPDGATLLDRSRFTYGGAIHSSVELFLTDNLLFVLKAQGRLLFGSDLHR FRPAISAGL Prediction of potential genes in microbial genomes Time: Fri May 27 09:22:01 2011 Seq name: gi|228308339|gb|ACLR01000113.1| Porphyromonas uenonis 60-3 ctg1118640599507, whole genome shotgun sequence Length of sequence - 1588 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 1164 853 ## PG1476 conjugative transposon protein TraM 2 1 Op 2 . - CDS 1166 - 1369 252 ## gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 3 1 Op 3 . - CDS 1341 - 1586 317 ## BF0119 hypothetical protein Predicted protein(s) >gi|228308339|gb|ACLR01000113.1| GENE 1 3 - 1164 853 387 aa, chain - ## HITS:1 COG:no KEGG:PG1476 NR:ns ## KEGG: PG1476 # Name: not_defined # Def: conjugative transposon protein TraM # Organism: P.gingivalis # Pathway: not_defined # 24 384 51 426 453 138 28.0 3e-31 MDTNKTAPDKAKLKQWLVMGLIIIVFVGALYMILRPYLIKEDKVGNGQLLTDVPDADVAK LPEDKLSAYKGSDLVELGEEKVDPQLQRLYDEMDSSDDHRTSRYQDDDYPYEESDGYQSS EDMYAQFAREQEEQDQVARLQEQIDGLQREKRNLADEREYLTQLGEIKDRQIAANDIYSN AYRRASADPAPAPEPPKDPNAPVSFEAVGAKTVDPSIVSTLSQSGRDASSQQAHEALLQN RFTTSVGSFRSEAVAKNTIRAIIDETKTIKLGDEIKMRLMEDIQIGTVVVPKGTTIVAKS NLTNNRLQLKVTSIEYRERIIGVDLSAFDLNGQEGLYVPVTAEAVGLKALGEGLAETATG GISIQQSGKDQILANVSNGLIRAGGNY >gi|228308339|gb|ACLR01000113.1| GENE 2 1166 - 1369 252 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469432|ref|ZP_04054443.1| ## NR: gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 [Porphyromonas uenonis 60-3] # 1 67 1 67 67 126 100.0 5e-28 MKQDVPPLDSVGTSSTQNKVGWVKKQTDRLKAWCDKLTPEERKRLTFISMGVYLAVFLLV ITISIFK >gi|228308339|gb|ACLR01000113.1| GENE 3 1341 - 1586 317 81 aa, chain - ## HITS:1 COG:no KEGG:BF0119 NR:ns ## KEGG: BF0119 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 81 127 207 207 96 60.0 3e-19 ISTNTSQVLTVDSISCDFNTYPYEAVVYGTQTIYRKSNVTERSLVTACSLLNTVRSDRNP QGFLITKFRVINNETRRTTPR Prediction of potential genes in microbial genomes Time: Fri May 27 09:22:12 2011 Seq name: gi|228308337|gb|ACLR01000114.1| Porphyromonas uenonis 60-3 deg1118640599530, whole genome shotgun sequence Length of sequence - 531 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 309 336 ## PG2003 deoxyguanosinetriphosphate triphosphohydrolase + Term 444 - 470 -0.6 Predicted protein(s) >gi|228308337|gb|ACLR01000114.1| GENE 1 1 - 309 336 102 aa, chain + ## HITS:1 COG:no KEGG:PG2003 NR:ns ## KEGG: PG2003 # Name: dgt # Def: deoxyguanosinetriphosphate triphosphohydrolase # Organism: P.gingivalis # Pathway: Purine metabolism [PATH:pgi00230] # 2 99 349 446 447 142 70.0 4e-33 AAYRANSAVAQSEIYTARAVIDVELAGHRIFSELIDKVMHSLLHPDDAYSRTLLSLVSSQ YNLHEASIYGKLQCTLDYISGMTDPYALDLYRRITGMSLPAI Prediction of potential genes in microbial genomes Time: Fri May 27 09:22:14 2011 Seq name: gi|228308334|gb|ACLR01000115.1| Porphyromonas uenonis 60-3 deg1118640599708, whole genome shotgun sequence Length of sequence - 535 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 67 - 417 396 ## gi|228469589|ref|ZP_04054581.1| transposase Orf2 + Term 487 - 522 -0.3 Predicted protein(s) >gi|228308334|gb|ACLR01000115.1| GENE 1 67 - 417 396 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469589|ref|ZP_04054581.1| ## NR: gi|228469589|ref|ZP_04054581.1| transposase Orf2 [Porphyromonas uenonis 60-3] # 1 116 89 204 204 209 100.0 5e-53 MAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTARPHRALNKKTPMQMLIPDYPN PLTTQPSKKQISKNNSPKAPSLKAPSPCRLTPNKELSLCTSAVKTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 09:22:28 2011 Seq name: gi|228308308|gb|ACLR01000116.1| Porphyromonas uenonis 60-3 ctg1118640599667, whole genome shotgun sequence Length of sequence - 28441 bp Number of predicted genes - 22, with homology - 21 Number of transcription units - 11, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 480 302 ## PG1474 conjugative transposon protein TraO 2 1 Op 2 . + CDS 493 - 957 415 ## PGN_0056 probable conserved protein found in conjugate transposon + Term 961 - 1001 0.9 + Prom 1075 - 1134 3.9 3 2 Tu 1 . + CDS 1165 - 1701 376 ## COG4283 Uncharacterized conserved protein + Term 1761 - 1824 0.4 - Term 1693 - 1738 3.7 4 3 Op 1 . - CDS 1740 - 3005 221 ## PGN_0050 hypothetical protein 5 3 Op 2 . - CDS 3002 - 3418 154 ## BF0106 hypothetical protein - Prom 3662 - 3721 2.0 + Prom 3552 - 3611 1.5 6 4 Op 1 . + CDS 3664 - 5706 1756 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins 7 4 Op 2 . + CDS 5737 - 6363 432 ## BF1116 hypothetical protein + Term 6393 - 6432 9.1 + Prom 6390 - 6449 2.0 8 5 Tu 1 . + CDS 6567 - 8075 575 ## BF1115 hypothetical protein + Prom 8176 - 8235 2.9 9 6 Tu 1 . + CDS 8300 - 8602 205 ## FN1972 hypothetical protein + Prom 8606 - 8665 2.2 10 7 Tu 1 . + CDS 8825 - 9076 156 ## COG2461 Uncharacterized conserved protein - TRNA 9179 - 9268 64.4 # Ser GCT 0 0 - Term 9091 - 9132 6.1 11 8 Op 1 . - CDS 9381 - 11384 1654 ## PGN_1907 hypothetical protein 12 8 Op 2 . - CDS 11326 - 13875 2703 ## COG1193 Mismatch repair ATPase (MutS family) 13 8 Op 3 . - CDS 13880 - 15220 1695 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 - Prom 15251 - 15310 1.9 + Prom 15646 - 15705 2.6 14 9 Op 1 . + CDS 15761 - 16372 732 ## Cpin_1142 transcriptional regulator, TetR family 15 9 Op 2 13/0.000 + CDS 16359 - 17741 1797 ## COG1538 Outer membrane protein 16 9 Op 3 27/0.000 + CDS 17775 - 18836 1342 ## COG0845 Membrane-fusion protein 17 9 Op 4 . + CDS 18853 - 21960 3418 ## COG0841 Cation/multidrug efflux pump + Term 22068 - 22117 11.1 + Prom 22528 - 22587 2.6 18 10 Op 1 . + CDS 22787 - 24214 1626 ## COG0593 ATPase involved in DNA replication initiation 19 10 Op 2 . + CDS 24235 - 24840 548 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 20 10 Op 3 . + CDS 24827 - 25237 480 ## COG5496 Predicted thioesterase 21 10 Op 4 . + CDS 25282 - 27945 3140 ## COG0525 Valyl-tRNA synthetase + Prom 28033 - 28092 4.3 22 11 Tu 1 . + CDS 28133 - 28321 84 ## + Term 28339 - 28372 -0.9 Predicted protein(s) >gi|228308308|gb|ACLR01000116.1| GENE 1 1 - 480 302 159 aa, chain + ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 1 159 34 192 192 190 62.0 1e-47 LVGSIPIIKGERLCAKESFGVGLAFAHYFKRANYAFLLAEYEQQGLTYRSYNVPLRDALL HFGYMHPILSDRGKNLFGYLGLSALCGYEELNEDKRLLPDGATLLDRSRFTYGGAIHSSV ELFLTDNLLFVLKAQGRLLFGSDLHRFRPAISAGLKFNI >gi|228308308|gb|ACLR01000116.1| GENE 2 493 - 957 415 154 aa, chain + ## HITS:1 COG:no KEGG:PGN_0056 NR:ns ## KEGG: PGN_0056 # Name: not_defined # Def: probable conserved protein found in conjugate transposon # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 148 1 148 153 214 66.0 9e-55 MKKFLVNTIWAVGGIALALFCLSACTRELDVQQAYDFSLEVMPVQNSIAKGETAEIRCSL KRAGRFADTRYTIRYFQPDGKGRLRMDDGTLFLPNDRYPLTKQEFRLYYTSRSTDRQTID IYVEDNFGQVQQRTFNFNNEREDKPKSSIEIQPT >gi|228308308|gb|ACLR01000116.1| GENE 3 1165 - 1701 376 178 aa, chain + ## HITS:1 COG:FN1248 KEGG:ns NR:ns ## COG: FN1248 COG4283 # Protein_GI_number: 19704583 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 178 25 202 204 191 55.0 4e-49 MARATTKADLMTSANQQFVKMWELIDSMSEEQQATPFAVEMTTSGKETHWRRDKNLRDVL VHLYEWHNLLLNWVQANSNGVPKPFLPEPYNWRTYPALNVEFWKKHQNTSLEEAKENLKA SHNAVMALIENYSNDELFAKGSLPWTGTSTLGAYCVSVTASHYDWAMKKIKKHIKYLK >gi|228308308|gb|ACLR01000116.1| GENE 4 1740 - 3005 221 421 aa, chain - ## HITS:1 COG:no KEGG:PGN_0050 NR:ns ## KEGG: PGN_0050 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 421 1 421 424 606 70.0 1e-172 MKPRNKFEKAVLALSTRLCPITKAQRQWAFRECIDHFAYRLPKGRTTCMDCGHSWTLEQP IDTCTCPQCRASLQVKTTRARKLQQKQYFTLLTTCGEYQVLRMFLLVVGMEKGCRAQSSV IEIGHYWWSDAGRQALVAIQRTFGHYIDSFSFYSPMAIRNDSEAYRYVAYSQIYPKLKVT NTLYRNGFNGEFHGIAPTQLIPALLTDSRAETMMKAGRHKDLRHLLSKSKGLDNYWNSYK LTLRHHYIISDIALWCDYVDMLKRLGKDIHNPKYICPSDLRGEHDKREVELRRQREREAM ERKRERAMADEERFRELKSKFFGIRFTDGTIQVHVLESVQEYIDEGAELHHCLFSNEYHL KENSLILSATIEGKRIETIEVSLDTLQVIQSRGVCNQNSPYHEQIVSLVNAHSQLIREVV R >gi|228308308|gb|ACLR01000116.1| GENE 5 3002 - 3418 154 138 aa, chain - ## HITS:1 COG:no KEGG:BF0106 NR:ns ## KEGG: BF0106 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 134 1 135 138 122 49.0 5e-27 MKGTEQFIRTIAEYPNGRAMTDPLFAPNLQKPHKNIEECILYILSEVQRSGCNGFADEEI YSMAVHYYDEDDIAVDKVAGCNVVVNHVVELSEEEKKQYQQEKLVKLQKRNERPKRTERT ETTSATQPQPTLFDTLAL >gi|228308308|gb|ACLR01000116.1| GENE 6 3664 - 5706 1756 680 aa, chain + ## HITS:1 COG:ECs3047 KEGG:ns NR:ns ## COG: ECs3047 COG4771 # Protein_GI_number: 15832301 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli O157:H7 # 31 543 31 535 659 134 25.0 8e-31 MKAYHFALILLILAPLRGFGQDSLMMYHELDEVVVTATRTPKKISDSPVLTQVISRKQIE RQGWMDIKSLLQDEIPGLSFSEVGFGTSINLQGLGAKHILFLIDGERIAGESGNNIDYTR LNLNNIERIEIVQGAGSALYGSQAMGGVINIITRKPTDRLSLGVDLRWGTRFQKNYSHIE PDDKYRYYKTRTDMPNADGALTIGYKKKSWSTQTVLSIQTKDAYNIYDKAGSTIYYPELN KTVTKEKSSTPTNISGFTTMTAKQTLSWTPIKALSLTAQGNYYSKRVHDLYLDNKHEYNR DLSGLFSAKYTLPNGGTWEANIHGDRYRRYTVFEQKKMQKQLVYTHTVLQPNISYRWTID NDHELITGAEYLREVLYADKFSKDGLTARAQGAYALFVQDDWKIPGTSLSMISGLRVDYN KGYGINFSPKLALLYKVSPFTIRLNYGRGYRSPSIKELYMDWDHLGMFWIYGNKQLKPES NHYLSLTTEYTHPQLYVMLSGYYNFFTNKIEGIWSEDQKELHYRNISKSTLAGVQIQMRI RPFISLPLQIHLASHYLHPFFHDGVRLTSQAPISGTGRIEYLQYWGNHRLAFNISASVMG KKSLSGLTTIEDEGIPKETPYRITIPGYTLVRSTIAYTHPKWGTLTIGVDNILNYQADVV SFNSYAGPGRSLFMSYHFNL >gi|228308308|gb|ACLR01000116.1| GENE 7 5737 - 6363 432 208 aa, chain + ## HITS:1 COG:no KEGG:BF1116 NR:ns ## KEGG: BF1116 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 2 208 3 214 214 140 47.0 3e-32 MNKTKCILALISALVLSLGIVSCGDNKPNAPSSKNKKTYTQSRRCKGELGKDWIYFSFAT GKEVPGIDETNFKERTDWDIAIHSFYFRANCGTSGKGKGGALMTNQTKLSAVKEAPTEGY IVDEAISIWGWKGELIKAEVSGNPELNKMIGFSGPPPKYTPSDNIFIIRTADGKYAKVKM ISYIDDSGKSGIVSFDYVYQPDGSTKLD >gi|228308308|gb|ACLR01000116.1| GENE 8 6567 - 8075 575 502 aa, chain + ## HITS:1 COG:no KEGG:BF1115 NR:ns ## KEGG: BF1115 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 10 494 6 497 504 362 39.0 2e-98 MKRSRYTLLKGWHKWICLVITILVLGFAGSGIILNHRDLVSGIDLPRSWLPKAYHYKSWS GGSLIGKIRATPDEEWIYGAAGVWAYDPQLKSYDSRSDGLDPRADRRSVQRVVRTNRGDL YALTAYSLYKWQADKKEWAKQPKLTPKNERLTDLETQGDTLVLLSRSHLYLIFSSQESPT RADLPAPDDYEPRVSLFSTIWQIHSGAFFGTIGRLVVDLMGVALILLSITGILITFVPKK AKVWKQFLKEHNRWGKWCFWGLLFVTITGAFLRPPLMITVIKAQVPTIPGTNLYSTNPWN DKLRKIRRDPITKEWLLSTSRGFYALKQFGKAPKRLTGTPPVSVMGLNVWEWSDRDSLWV VGSFSGAFRWNRQKGQVYDALTGKAYTESGQKGMPIFGTPISGYTIDSDGRERFYSYSTG ELQAEDATDTMPPMPTEISPGRISLWHAALELHVGRLYEKILGPLQPLYIFLSALLLILA LTTGWMLYRRYYRRRGGKKPKK >gi|228308308|gb|ACLR01000116.1| GENE 9 8300 - 8602 205 100 aa, chain + ## HITS:1 COG:no KEGG:FN1972 NR:ns ## KEGG: FN1972 # Name: not_defined # Def: hypothetical protein # Organism: F.nucleatum # Pathway: not_defined # 8 97 28 117 122 75 37.0 4e-13 MKQIINPIGKKINTLGKVIDNKELMLVHLQLKSGEQVPSHDHKGQEVYFTIVKGTVEVTL DDTEVHRISTGTVLHFPGEAHVGVNAIEDSDFFVYLINRQ >gi|228308308|gb|ACLR01000116.1| GENE 10 8825 - 9076 156 83 aa, chain + ## HITS:1 COG:FN1655 KEGG:ns NR:ns ## COG: FN1655 COG2461 # Protein_GI_number: 19704976 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 1 59 72 131 512 90 66.0 6e-19 MIELFDEVMDTSRPNLPLNHPIMCYYRENDEMRCLMLSIEDLVQYPIIKNQWLELYDQIA AFRTHLLTVFLLLLRRLSELECL >gi|228308308|gb|ACLR01000116.1| GENE 11 9381 - 11384 1654 667 aa, chain - ## HITS:1 COG:no KEGG:PGN_1907 NR:ns ## KEGG: PGN_1907 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 26 542 11 542 668 122 27.0 7e-26 MMKMCGLAVQALRSFICRSRGQLYLVLLLLLPLTGWAQNDSLTMSELPLEWLVESLPSDE LSELGEDDLLELSPQKAKAKELLDLNRATQQELQVRFPFLTRQQLHQLRLYRDERGGELQ SVYDLKWITGWDRETIARVAPYVTVRPFAGEPYEKPKAPLTGEAYLAMSYHKASETDPEA WYDPLKLRSAISLRQKGLWQVAAQYQRYPQELAKDGTWRYFAMYEPRLPYLDKVVLGHFK VGWGAGLLAARSVWASASALPQFTRHKSMISPSLSAMRERTLRGIASEGHWGAWRYSAFY SYSRLDGTIDERQGLILSIRPNMRYDTPERRAQRALIPMQTMAAQLAYTMPRASLSLQTL YADWMGYDLAFMPGYKAIASDTPLQSHWLTSLAYQWQSQSRRLELQGELATEQLEHLGFI QHLRYHTPRQRDFGVTLYYMSPRFASYYGRSESHYARLGNDMGLRLYGTMRLMKRSTLRA MLELYESIEPRYHKLERSRGLLTRLYLTTRYNNQIEQLWYGQLGRSNEEALRWRLSSTLR YSLDAISLQLVGTIQQRRLEEQDEAQWGRSLTAVARYRTGVRRPLSIALSGHYYHADHMR VASYAYLPTSRYAFGLYSATGQGIATALLLQWQLAPHWTLSASMRYDRNLDEGVPRWRAD SYLVYRF >gi|228308308|gb|ACLR01000116.1| GENE 12 11326 - 13875 2703 849 aa, chain - ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 30 848 23 785 785 311 29.0 4e-84 MPSDITYPSDYLDKVGYYDLLDLIASECHSSMGREMVGALTASTRPDAIRHRLERVREMR HLLNVTMELPTRRVADLRATLGTLRAEGSYLTEEELAQVAQAIVSYEAWSRLLTKVQDNG AGEVTPLYPSLSRLVVGSEGLQEIAQTILRKLDPHGRLVDNASPRLAELRLALQHEERAI AKLMRGLLTAAQAAGYVEEDAQATMRSGRPVLPVTAMHKRQIPGIVHDESATGKTLYIEP LEVVEANNRIRELESEEHREVIEILRQLTAPIRERRETLSQLYLSMGRIDAVCAIARFAD EMHCSIPEVRNKPTIQWYQAINPILQHTLSQEGKSVVAQDILLRYPNERILVISGPNAGG KSVCLKTVGLLQYMLQSGIPIPVHPDSVAGVFNHLAIEIGDNQSMEDDLSTYSSHLKHMR AMSAACGANSLLLIDEFGAGTEPELGGAIAEGLLALFNEQRAWGVITTHYRNLKEYATTH KGIVNGAMLYDQKEMKPLYELSIGQPGSSFALEIARQQGLPRKVLEYATELVGEEVIQSE RYVQDIVRDKQYWQRKRTEIEHREQKLERLLADYEARLSKLKEQRQDLLTQAQQEATQLL DQSRAQIERTIREIKESQAERQQTKEARQALSAYSEQLAQVDTLEQSGSVERELERLKRR KERKERKRKQGGAPERGAQSQSPVKLSVPKPPKEGDEVRVTTMNVVGVLSELSASSATVV VNGRIRITCKPNEIVRLGSERKEEQAQAAPQPARTTNVVEHLHERRLDFSDRLDVRGMRA AEAIQAVQYFLDDAISLGFNRVQILHGTGTGALRISIRELLDHYPGVSHYHDEDVRFGGA GITIVHLQE >gi|228308308|gb|ACLR01000116.1| GENE 13 13880 - 15220 1695 446 aa, chain - ## HITS:1 COG:NMB0183 KEGG:ns NR:ns ## COG: NMB0183 COG0750 # Protein_GI_number: 15676110 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Neisseria meningitidis MC58 # 9 446 1 445 446 129 28.0 2e-29 MGIDTIALMSTLMRIGQLLLALSLLVFIHELGHFLFARLFGVRVDKFYLFFDLKGKALWR YRPKGSETEYGIGWLPLGGYCKIHGMIDESLDTDQIKEPIRGNEFRSKPAWQRFFILIGG VLFNFILALLIYAGISYHWGDVEMSSRSVTAGMIFSPAAQEVGFHDGDIIWSIDGKERDV LRADFMRAVIEAKEVTVQRDGQLVNIAIPDDMMQRILRGNEGLMTMQLPFIADSVLAGSA AAEAGVQRGDKLLALDSIPMPHLPSGRRYFYTHAGEWISSEWLRGSDTVQLAIRPDTTGV IGVMLRPLQDIYEVQQVRYSLPESFVAGWHKGIGTLSGYAQDMKYVFTPEGASSLGGLVS MGKLFPAQWDWFTFWQICALLSIIFAFMNIIPIPGLDGGHLLFVIWEMITGRKVKDEVLI RAQMVGMLLLIALVIYANANDLFKLF >gi|228308308|gb|ACLR01000116.1| GENE 14 15761 - 16372 732 203 aa, chain + ## HITS:1 COG:no KEGG:Cpin_1142 NR:ns ## KEGG: Cpin_1142 # Name: not_defined # Def: transcriptional regulator, TetR family # Organism: C.pinensis # Pathway: not_defined # 7 199 4 197 202 87 32.0 2e-16 MNTNSRKDKYVAKAISILKQEGFRLSLDEMANKMGITKKTLYNNFSSKDELLKECVHAIS GDFQSVLSMLEEDASNPIESLTKCFAQLDELFVTLNPVFFSDLMRSNPDQATLEHLMGSR YFEKTMTTNLQRGVQRGLYRSDLDIPFVCEYISYSIFGFYIQAVIRNQPLPTGSYFASIL QYHLRAIVSAEGNHFIQYNHDKI >gi|228308308|gb|ACLR01000116.1| GENE 15 16359 - 17741 1797 460 aa, chain + ## HITS:1 COG:aq_1332 KEGG:ns NR:ns ## COG: aq_1332 COG1538 # Protein_GI_number: 15606535 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Aquifex aeolicus # 29 426 22 388 415 91 21.0 3e-18 MIKSNRRTWLLLLSLLLLATPGYAQESYSLQQCLNYAVQHNGNVKKSTYDQEKAKQARKE VIGALMPQISGSAALNDNLKKAKFIMPNFMNNMLPDKMRDPNASQYMTIEMGTQYSANAG VAVNQQILNMSLFNTLDIAKVSERMATLAATSTEEDVIAQTATLYYGAQVTQYAAEQMGH SVELVEKMLRTMEASYSSGLIKKVDVDRLKVNLTNLKTQHAAIESGLEVQKNLLKLQMGL EVTEPIVIAPLDLDLLAQQEIAESGAATFDPIQHVAYQQLQEREKMARLQERAKKYDYIP TLSIALNAQYNYMSDKLFGGGNTHYGYPTAMLGLSLRVPIFSGLSRLSKVRESHMDLLKT QEDLRSLDQSLRMAHLNASLKLQDTQRTIALQKENQALATQVFDLAQQNFTLGVASLSDV LNASQSLVQAQMTYANALGDYIKAYIDLKKSKGEIRDLMN >gi|228308308|gb|ACLR01000116.1| GENE 16 17775 - 18836 1342 353 aa, chain + ## HITS:1 COG:CC1203 KEGG:ns NR:ns ## COG: CC1203 COG0845 # Protein_GI_number: 16125454 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Caulobacter vibrioides # 44 348 26 333 354 102 25.0 8e-22 MKRKVYLPITIVLAIGLIVLVLVLNKKSTTAKTQDLLAEEATVAVRTEVVSESNYTADFT ANGLVEGVKDLSFVSSLGGRVVSLYADEGDHVSKGKLLIQLDAETLRADAEASRVAYEAA KKDYERFQQAHSQGGVTDQQLSTMHTQMVAAQGRYISSRSRLTDASIKAPISGEIYKRYV EVGSYVNPGTKLFDIVDDSQLKASCFVTERQRLQLTKGQAVSVESELYPGQTITGKISMV GDKANHALAFPVDVTLDKQGAEGLRPGMYVSVSFGNQQETHGILIPRRAIVGSVKDAHVY VVEQGVAKQKAITTGYLIGDRIEVLSGLQAGESVIVAGLINVSDGLPVKTINE >gi|228308308|gb|ACLR01000116.1| GENE 17 18853 - 21960 3418 1035 aa, chain + ## HITS:1 COG:RC0211 KEGG:ns NR:ns ## COG: RC0211 COG0841 # Protein_GI_number: 15892134 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Rickettsia conorii # 1 1015 1 1005 1008 452 28.0 1e-126 MKIVKLSIQRPIYVTVLFILLTVLGYLSFKSLSAELMPKFTPPLLNVQIIYPGASPSEVE NSLTQKAEEVLSSMEGIDQMQSYSFEGMSMIMVSFDFGTDIDKAMTEAQNRLAAKRAELP REVFAPRISKVSVDEKPILILSARADIGSTELYDLVDKRIVPELSHIKGVANVDLVGGVE REIQINLDKGRMQEFGITPMMVQGAIRASNLDFPTGYLQSDETQMAVRLSGKITSIEELR QIILRNVSGAPIRLEDVAEVVDGVKDPVKMGRVNGQEAILLNILKQSDANALQVSEAVGK QIKKLEEQYAPEGLKVEVAQDTTTFTRNAISSVLTDLFLAILLVSLVILLFLHNVRNALI VMVVVPVSLISSFIGMRIFGFTLNMMSLLALSLVIGVLVDDAIVVIENVYRHMEMGKNRV RATWDALSEIGLTVISVTLVLVVVFLPIIFTNSLVSDILRQFCAVIVIAILFSLLAALTL VPLLTSRLGNIQPLRSDRPLGRMLTSFERGISRFAEGISSLTRWGLSHRWALAGIVVALM AAVLVLFPLGFINFEFQPYMDRQECIIQLEMPKDISMAESNQLVRKAETWLMQRPEVEKV VTMVGLTSDNSQSSKGTPYLAELDVKLRKTPEGTEAYVARIRKPLTDYLVDARVNVYSVS MTGTVSKAAVEYIVSGADKDSVALFADKALALLSTIPGVIQPTLSVENATPEIIVQVDRD KMSNLGLTLDNVGGMMQTNFQGNDQLRYTQGDYEYAINIRADKLSRRSIEDVAGLTVANP QGDLIQLSQFADVSLGIGPSRLERFNRNSSVTLRAQAYGVPAGAIAKQFMGQLSKTQMPQ GVQIQTAGDMKKMADSMSVLTTAILLSLLFIYLALVLLYNNWTDPLVVMVAIPLSIVGAL LALAMSNTAMSIYAMLGMVMLVGLVAKNAILLVDFANEARGEGLSVDEALIQAVKLRTRP ILMTALSTIIGMLPVALSRGSGAELRTGMAWVIIGGMALSTLLTLIVVPALYKAFHARQR TSVKPKVDIKALMQD >gi|228308308|gb|ACLR01000116.1| GENE 18 22787 - 24214 1626 475 aa, chain + ## HITS:1 COG:YPO4097 KEGG:ns NR:ns ## COG: YPO4097 COG0593 # Protein_GI_number: 16124206 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Yersinia pestis # 7 473 2 460 462 258 33.0 2e-68 MTDREAALRAWSECTVLLQAMIQPEVYNAWFPHIKPVSLIGVEMTLGVPSQFFCEYIETH FINELKQVLQRIIGPNVVLKYKALVDSAASHRKNSSVTLPTQSYASNAYGAASAYAISAS GAAPALKSEPRQLPDFDSQLKPQLSFASYYQGESNRTASSIARSIAEKPGQGALNPCFIY GPSGVGKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDV LLIDDIQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLT IEVERPDYDLRKEYLRHKSEESGSILPREMIDYIARTVTSSIRGLQGVFFSLITRAAVEG CDITSSFVKKIVSQTVKQEKKEITVSMIEKTVCEYFHVPTELVRSRSRKADVAQARQLIM YFAKRYTDQSLSAIGELLGGRSHATVLHSCKVVEDQAEVSTAFRSDLNAIESLIK >gi|228308308|gb|ACLR01000116.1| GENE 19 24235 - 24840 548 201 aa, chain + ## HITS:1 COG:PA3156 KEGG:ns NR:ns ## COG: PA3156 COG0110 # Protein_GI_number: 15598352 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Pseudomonas aeruginosa # 12 174 4 166 191 182 52.0 4e-46 MPHPSHTTETGYVDPTTIIDEGAHIGTGTTIWHFCHIMHDAFIGKQCHLGQNVVVQPRVH LGDRCRILNNVTLFTGVHCEEEVFLGPSCVFTNVINPRAAVSRKHEFRPTYIGRGASIGA NATILCGVKIGAYAMIGAGTVVIRDVAPYALVVGNPARQIGWVSQEGHKLDFSEGSSCYV AEEQRTYHLSHDGNTITYDNQ >gi|228308308|gb|ACLR01000116.1| GENE 20 24827 - 25237 480 136 aa, chain + ## HITS:1 COG:SPy1339 KEGG:ns NR:ns ## COG: SPy1339 COG5496 # Protein_GI_number: 15675277 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Streptococcus pyogenes M1 GAS # 15 133 2 120 121 81 39.0 4e-16 MTTNNRYMNMESKPTTLTKQYIIEPKHSAADMGSGDMPVLATPALIAFMENAAMLLARNY TEEGSTTVGTMITTDHQHATPIGETITVTAQLSSIEGRKLTFAIEATDQTGVVAQATHER FIVSRQRFLERLGIKE >gi|228308308|gb|ACLR01000116.1| GENE 21 25282 - 27945 3140 887 aa, chain + ## HITS:1 COG:FN2011 KEGG:ns NR:ns ## COG: FN2011 COG0525 # Protein_GI_number: 19705307 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Fusobacterium nucleatum # 14 883 8 885 887 727 43.0 0 MQDDSITSQITSVYDPAGVETKWYQYWLDHKLFEAHVDHSKKPYTIIMPPPNVTGVLHMG HMLNNTIQDILIRRARIAGYNACWVPGTDHASIATEAKVVDQLAKQGIQKNQLTREDFLK HAWEWTDKYGGIILSQLRRLGVSCDWSRTAFTLDEERSESVINVFCKLYEEGLIYRGVRV VNWDPKAQTALSDEEVIFKEHQGKLYYLRYFIEGTEDYIVVATTRPETIMGDTAVCINPT DPRYHHLRGKRVIVPLVGRSVPIIEDEYVDLEFGTGCLKVTPAHDINDYQLGITHQLETI DIFNNDGTLNEHGGKYAGKDRFVVRKEIVADLKEAGLLDHEEDYNNRVGYSERTDVAIEP KLSMQWFLKMSELAKPALQAVLEDTVQLVPKKFVNTYRYWLENIKDWCISRQLWWGHRIP AYYLPNGQFVVAATAEEALAKAKQETGDNSLTLEQLNQESDCLDTWFSSWLWPISLFGKI DGSEPTEDLKYFYPTSVLVTGPDILFFWVARMIMAGYHFMGDRPFDKVYLTGIVRDDKGR KMSKSLGNSPDPIDLMDKYGADGVRLGLMMATSAGNDLLYDESLVEQGRNFCNKIWNSYR FLKTQSVSDEVKPDAASLIAMEWFESLLASTMSELDDLFDKYRISDAVTLLYKLVRDDFS GLYLEAIKPAYGTSMSRDVYERTIHYFEQIFILLHPFMPFITEELWQDVAPRQEGDSIMY AHLDDTLQADKQLLADMEHAVELITKIRSIRSAHQIATKQSLALTTSGEHPERMSELVIK LANLSAFTKADAHQSEEHTAEHFIIGTVPYSVELAGAIDVEKTVERLRGELAHQEKFLAG VRKKLSNEKFVTNAKPEVVALERKKESDALLRIDEVQQQLKQLGATL >gi|228308308|gb|ACLR01000116.1| GENE 22 28133 - 28321 84 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSPLAFSSRGNRVSPRRSEQILPNFDFVLPNFHFILPNFHFSAPWETFVFSLAMWQFLRE DR Prediction of potential genes in microbial genomes Time: Fri May 27 09:23:06 2011 Seq name: gi|228308304|gb|ACLR01000117.1| Porphyromonas uenonis 60-3 deg1118640599717, whole genome shotgun sequence Length of sequence - 539 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 94 - 459 397 ## gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein Predicted protein(s) >gi|228308304|gb|ACLR01000117.1| GENE 1 94 - 459 397 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 09:23:42 2011 Seq name: gi|228308199|gb|ACLR01000118.1| Porphyromonas uenonis 60-3 ctg1118640599706, whole genome shotgun sequence Length of sequence - 108002 bp Number of predicted genes - 109, with homology - 100 Number of transcription units - 43, operones - 26 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 423 364 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 461 - 667 96 ## + Term 710 - 761 5.1 3 2 Op 1 . - CDS 647 - 892 98 ## 4 2 Op 2 23/0.000 - CDS 889 - 1602 964 ## COG1346 Putative effector of murein hydrolase 5 2 Op 3 . - CDS 1599 - 1970 394 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 2093 - 2152 1.9 + Prom 1927 - 1986 2.9 6 3 Tu 1 . + CDS 2215 - 2784 732 ## gi|228470140|ref|ZP_04055049.1| hypothetical protein PORUE0001_0959 + Term 2807 - 2868 2.8 - Term 2801 - 2850 15.3 7 4 Tu 1 . - CDS 2888 - 4072 1471 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Term 4135 - 4178 9.1 8 5 Op 1 . - CDS 4194 - 4454 405 ## PGN_0349 upregulated in stationary phase protein A 9 5 Op 2 . - CDS 4551 - 6497 1920 ## COG3537 Putative alpha-1,2-mannosidase 10 5 Op 3 . - CDS 6494 - 6784 411 ## gi|228470075|ref|ZP_04054984.1| conserved hypothetical protein - Prom 6825 - 6884 2.5 - TRNA 6927 - 7010 69.3 # Leu CAA 0 0 - Term 6865 - 6915 11.3 11 6 Tu 1 . - CDS 7053 - 7406 279 ## ZPR_0794 hypothetical protein 12 7 Tu 1 . - CDS 7766 - 7966 58 ## - Prom 7992 - 8051 2.7 + Prom 7905 - 7964 2.7 13 8 Op 1 . + CDS 7984 - 9027 1460 ## COG0781 Transcription termination factor 14 8 Op 2 . + CDS 9055 - 11106 1908 ## COG0795 Predicted permeases 15 8 Op 3 . + CDS 11138 - 12358 1494 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase 16 8 Op 4 . + CDS 12387 - 13193 1108 ## gi|228470146|ref|ZP_04055055.1| hypothetical protein PORUE0001_0970 + Term 13253 - 13294 8.5 + Prom 13299 - 13358 2.5 17 9 Op 1 . + CDS 13412 - 13936 579 ## COG0319 Predicted metal-dependent hydrolase 18 9 Op 2 . + CDS 13958 - 14986 680 ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase 19 9 Op 3 . + CDS 14997 - 15488 286 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 20 9 Op 4 . + CDS 15524 - 16945 1989 ## PG1726 PDZ domain-containing protein 21 9 Op 5 . + CDS 16976 - 18253 1022 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 22 9 Op 6 . + CDS 18299 - 19159 971 ## COG0414 Panthothenate synthetase + Term 19186 - 19223 2.2 - Term 19387 - 19433 11.2 23 10 Op 1 . - CDS 19459 - 20664 1527 ## PG0291 hypothetical protein 24 10 Op 2 . - CDS 20703 - 22253 1861 ## PGN_1674 hypothetical protein 25 10 Op 3 . - CDS 22308 - 23342 1229 ## PGN_1675 hypothetical protein 26 10 Op 4 . - CDS 23396 - 24760 1713 ## COG1262 Uncharacterized conserved protein 27 11 Tu 1 . - CDS 24958 - 25860 726 ## PG0287 hypothetical protein - Term 25881 - 25920 -0.0 28 12 Tu 1 . - CDS 26090 - 26311 392 ## PGN_1678 hypothetical protein - Prom 26426 - 26485 2.9 29 13 Tu 1 . + CDS 26676 - 26906 157 ## - Term 26722 - 26764 1.1 30 14 Tu 1 . - CDS 26916 - 27209 87 ## - Prom 27254 - 27313 2.6 + Prom 27211 - 27270 4.5 31 15 Op 1 . + CDS 27304 - 27801 328 ## PGN_1503 probable ferric uptake transcriptional regulator 32 15 Op 2 . + CDS 27823 - 29112 1704 ## COG0104 Adenylosuccinate synthase 33 15 Op 3 . + CDS 29102 - 30421 1173 ## COG0285 Folylpolyglutamate synthase 34 15 Op 4 . + CDS 30480 - 31889 1541 ## PGN_1506 putative transporter + Prom 31990 - 32049 3.1 35 16 Tu 1 . + CDS 32072 - 32692 696 ## PGN_0809 putative TonB protein + Term 32835 - 32876 -0.8 36 17 Op 1 . + CDS 33069 - 33308 262 ## COG0142 Geranylgeranyl pyrophosphate synthase 37 17 Op 2 . + CDS 33313 - 33513 161 ## gi|228470142|ref|ZP_04055051.1| polyprenyl synthetase + Prom 33834 - 33893 2.3 38 18 Tu 1 . + CDS 33980 - 34771 530 ## COG0084 Mg-dependent DNase + TRNA 34964 - 35054 59.4 # Ser GGA 0 0 + Prom 34979 - 35038 80.4 39 19 Op 1 . + CDS 35100 - 35933 1132 ## COG0811 Biopolymer transport proteins 40 19 Op 2 . + CDS 35943 - 36413 467 ## PGN_0805 hypothetical protein 41 19 Op 3 . + CDS 36438 - 37043 652 ## PGN_0804 hypothetical protein 42 19 Op 4 . + CDS 37067 - 37543 570 ## PGN_0803 hypothetical protein + Term 37587 - 37636 11.0 43 20 Op 1 . + CDS 38128 - 39711 1709 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases 44 20 Op 2 . + CDS 39715 - 40176 503 ## PG1156 S4 domain-containing protein 45 20 Op 3 . + CDS 40237 - 40812 419 ## COG0406 Fructose-2,6-bisphosphatase 46 20 Op 4 40/0.000 + CDS 40864 - 42453 1188 ## COG0642 Signal transduction histidine kinase 47 20 Op 5 . + CDS 42528 - 43259 1008 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 43282 - 43342 19.3 - Term 43274 - 43324 13.2 48 21 Op 1 . - CDS 43366 - 44730 1588 ## COG3004 Na+/H+ antiporter 49 21 Op 2 . - CDS 44797 - 45030 58 ## - Term 45115 - 45162 -0.1 50 22 Op 1 . - CDS 45215 - 46537 1081 ## PGN_0262 hypothetical protein 51 22 Op 2 3/0.000 - CDS 46534 - 47865 1102 ## PROTEIN SUPPORTED gi|227413264|ref|ZP_03896450.1| SSU ribosomal protein S12P methylthiotransferase 52 22 Op 3 . - CDS 47884 - 48843 796 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 53 22 Op 4 . - CDS 48873 - 50039 1419 ## COG0019 Diaminopimelate decarboxylase + Prom 50285 - 50344 2.5 54 23 Tu 1 . + CDS 50372 - 51007 661 ## COG0108 3,4-dihydroxy-2-butanone 4-phosphate synthase + Term 51031 - 51082 8.1 - Term 51021 - 51068 8.5 55 24 Op 1 . - CDS 51092 - 53350 2998 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 56 24 Op 2 . - CDS 53388 - 54062 613 ## COG0132 Dethiobiotin synthetase - Prom 54199 - 54258 4.5 57 25 Tu 1 . - CDS 54520 - 54711 145 ## + Prom 54662 - 54721 5.4 58 26 Op 1 . + CDS 54832 - 55083 266 ## gi|228470063|ref|ZP_04054972.1| transglycosylase-associated protein 59 26 Op 2 . + CDS 55123 - 55287 161 ## COG1592 Rubrerythrin + Term 55330 - 55381 17.4 - Term 55316 - 55369 10.2 60 27 Op 1 . - CDS 55429 - 56520 1068 ## COG1194 A/G-specific DNA glycosylase 61 27 Op 2 . - CDS 56534 - 57517 1328 ## COG0205 6-phosphofructokinase 62 27 Op 3 . - CDS 57584 - 58387 679 ## COG2003 DNA repair proteins 63 27 Op 4 . - CDS 58384 - 59355 768 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 64 27 Op 5 . - CDS 59374 - 59919 698 ## PGN_1625 hypothetical protein 65 27 Op 6 . - CDS 59960 - 60583 908 ## COG0302 GTP cyclohydrolase I 66 27 Op 7 . - CDS 60656 - 61132 495 ## PGN_0666 hypothetical protein 67 27 Op 8 . - CDS 61129 - 61893 1054 ## COG0149 Triosephosphate isomerase 68 27 Op 9 . - CDS 61910 - 63211 1471 ## PGN_0664 hypothetical protein 69 27 Op 10 . - CDS 63238 - 63780 718 ## BT_3927 hypothetical protein 70 27 Op 11 . - CDS 63808 - 66273 3062 ## COG0466 ATP-dependent Lon protease, bacterial type - Prom 66315 - 66374 3.3 - Term 66769 - 66823 18.1 71 28 Op 1 . - CDS 66912 - 68318 1761 ## COG3579 Aminopeptidase C 72 28 Op 2 . - CDS 68333 - 70669 2110 ## PG1604 immunoreactive 84 kDa antigen PG93 73 28 Op 3 . - CDS 70666 - 71055 213 ## PROTEIN SUPPORTED gi|162456259|ref|YP_001618626.1| putative ribosomal protein 74 28 Op 4 . - CDS 71052 - 71258 224 ## - Prom 71289 - 71348 2.6 75 29 Op 1 . + CDS 71307 - 71708 353 ## COG2315 Uncharacterized protein conserved in bacteria 76 29 Op 2 . + CDS 71689 - 72438 663 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 77 29 Op 3 . + CDS 72448 - 73236 584 ## COG0566 rRNA methylases 78 30 Op 1 . - CDS 73242 - 74234 456 ## PROTEIN SUPPORTED gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase 79 30 Op 2 . - CDS 74237 - 74797 355 ## COG0742 N6-adenine-specific methylase 80 30 Op 3 . - CDS 74811 - 75659 661 ## gi|228470098|ref|ZP_04055007.1| hypothetical protein PORUE0001_1032 81 31 Tu 1 . - CDS 75842 - 76483 692 ## PG1302 hypothetical protein - Term 76835 - 76876 2.3 82 32 Op 1 . - CDS 77088 - 78134 401 ## SRU_2576 putative poly-gamma-glutamate biosynthesis enzyme 83 32 Op 2 . - CDS 78150 - 78590 379 ## gi|228470137|ref|ZP_04055046.1| hypothetical protein PORUE0001_1035 84 33 Op 1 . + CDS 79233 - 79646 618 ## COG2185 Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) 85 33 Op 2 . + CDS 79648 - 81033 1640 ## CTC02567 glutamate mutase, MutL 86 33 Op 3 3/0.000 + CDS 81088 - 82536 1782 ## COG4865 Glutamate mutase epsilon subunit + Term 82553 - 82590 6.2 87 33 Op 4 . + CDS 82621 - 83865 1578 ## COG3799 Methylaspartate ammonia-lyase + Term 83876 - 83914 1.5 88 34 Op 1 . + CDS 83998 - 85386 1852 ## Hore_15420 hypothetical protein 89 34 Op 2 . + CDS 85411 - 85731 464 ## CHY_0584 hypothetical protein + Term 85817 - 85875 19.6 90 35 Tu 1 . - CDS 85774 - 85983 117 ## 91 36 Op 1 . + CDS 86039 - 87085 1084 ## COG2255 Holliday junction resolvasome, helicase subunit 92 36 Op 2 . + CDS 87110 - 88609 1336 ## COG1570 Exonuclease VII, large subunit 93 36 Op 3 . + CDS 88627 - 90108 1542 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 90150 - 90201 9.5 - Term 90138 - 90187 12.0 94 37 Op 1 . - CDS 90230 - 90487 385 ## A2cp1_3387 hypothetical protein 95 37 Op 2 . - CDS 90480 - 91718 1217 ## COG2461 Uncharacterized conserved protein - Prom 91739 - 91798 3.6 + Prom 92021 - 92080 1.7 96 38 Tu 1 . + CDS 92209 - 92577 99 ## COG3189 Uncharacterized conserved protein + Prom 92580 - 92639 2.1 97 39 Op 1 . + CDS 92679 - 93233 787 ## PGN_1038 hypothetical protein 98 39 Op 2 . + CDS 93261 - 93698 631 ## COG0698 Ribose 5-phosphate isomerase RpiB 99 39 Op 3 . + CDS 93718 - 94209 494 ## BF0726 hypothetical protein 100 39 Op 4 . + CDS 94307 - 97756 3444 ## COG3468 Type V secretory pathway, adhesin AidA 101 40 Op 1 26/0.000 - CDS 97757 - 98485 459 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 102 40 Op 2 . - CDS 98482 - 99735 991 ## COG0438 Glycosyltransferase 103 40 Op 3 . - CDS 99738 - 100781 1266 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 104 40 Op 4 . - CDS 100708 - 101028 360 ## PG0652 hypothetical protein 105 40 Op 5 . - CDS 101059 - 102348 1634 ## COG0560 Phosphoserine phosphatase - Prom 102369 - 102428 2.5 - Term 102576 - 102622 8.1 106 41 Op 1 . - CDS 102647 - 103945 1570 ## BVU_2751 hypothetical protein 107 41 Op 2 . - CDS 103966 - 106575 3674 ## BVU_2750 hypothetical protein - Prom 106630 - 106689 2.8 - Term 106781 - 106826 10.1 108 42 Tu 1 . - CDS 106938 - 107135 327 ## PROTEIN SUPPORTED gi|228470087|ref|ZP_04054996.1| ribosomal protein S21 - Prom 107331 - 107390 3.2 109 43 Tu 1 . - CDS 107581 - 108000 407 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308199|gb|ACLR01000118.1| GENE 1 1 - 423 364 140 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 9 74 145 209 227 59 45.0 2e-09 MTDYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALY NTARPHRALNKKTPMQMRIPDYPNPLTTQPSKKQTSKNNSPTAPSLKTPSPCRLTPNKEL SLCTSAVKTTTSRVPQQEQN >gi|228308199|gb|ACLR01000118.1| GENE 2 461 - 667 96 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYHLSNTSPTVYFFQEEDTIPPNFDFFLPKFHFVLPNFYIPPPWRFFVSSLTNPDFLGSF ASLVRSAS >gi|228308199|gb|ACLR01000118.1| GENE 3 647 - 892 98 81 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRAGIIEYRALLVRGVPFFFVGGRSDMIYPKADALSTRCQNFPTVERKVSSLGNFIFQGW KVFGNMLRRFVLSLFSAGRSH >gi|228308199|gb|ACLR01000118.1| GENE 4 889 - 1602 964 237 aa, chain - ## HITS:1 COG:ECs3034 KEGG:ns NR:ns ## COG: ECs3034 COG1346 # Protein_GI_number: 15832288 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Escherichia coli O157:H7 # 14 229 7 222 231 139 40.0 3e-33 MINLITLLLSKPIYCLPLTIGIYFLSLLLYRKVRIGLFHPLIVTIGLIILMLYLSGTSYE DYKEGSQLIDFLLGPSVVSLGYILYEQSKYLRGRVVSIMFSLFVGSLIGILSAVGLAYAL GAGAPIAHSMESRSVTTPIAIALSEQSGGIPALTAVVVVISGIIGGVIGPPLFKWLRIES SIAKGLALGAAAHGVGTSVAIQMGALEGAIGGLAIGIMGVFTSILIPIVHYVAQLFV >gi|228308199|gb|ACLR01000118.1| GENE 5 1599 - 1970 394 123 aa, chain - ## HITS:1 COG:L172519 KEGG:ns NR:ns ## COG: L172519 COG1380 # Protein_GI_number: 15672744 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Lactococcus lactis # 1 106 1 106 134 68 34.0 2e-12 MKSLVQCFWVLFFFAVGELIGMMIGHFLPGSVIGLILLFLALETKLIKPDKVDSVAKFLT LNMGLFFVPAGVGLITQVDLIQQYWAAIIISMVVSTALVLVVVGRMQHRFERHHKEQKTN DNA >gi|228308199|gb|ACLR01000118.1| GENE 6 2215 - 2784 732 189 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470140|ref|ZP_04055049.1| ## NR: gi|228470140|ref|ZP_04055049.1| hypothetical protein PORUE0001_0959 [Porphyromonas uenonis 60-3] # 1 189 1 189 189 322 100.0 9e-87 MRRIKLPLSRLLAMLLALTMTLGAVAQTSPFKYVDAEALPTAADGVQIFSFNENMLDMIP MESITKMIKKDGNSSVMANVKTLLKKLKSLNVYIASTPESIDKLQKAFAPMLTPGLHRSI KPLLVVNQPEDNLKVQIVSRESGIWCWRKCPELLISVLDEDEYYVVGLTGDFAPKDIQKL VSSAFPSGK >gi|228308199|gb|ACLR01000118.1| GENE 7 2888 - 4072 1471 394 aa, chain - ## HITS:1 COG:PH0823 KEGG:ns NR:ns ## COG: PH0823 COG0589 # Protein_GI_number: 14590690 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Pyrococcus horikoshii # 104 255 8 156 170 61 30.0 2e-09 MPQDKDQSKLVTVAIHTYEKAQILQSLLQSQGIPATLHNVNTVQPVFSTGVRVRIAERDL PRALAYIEDLKWDLDEAYDVLQEKSDLANESPDTAHVAAYKGYVLIPVDFSSYTDKIVKL GFHFAARRELHVLLMHVYTGTMPQMNFPYGDFTALLPQIQEASQQEAGKAEQQMTELSKE IDAKMADGSLPQVTYRTTIRDGIPADEILRYAKRNLPAIIIMGTRGKTEDSDYIVGSVAA EIIDRAQAPVLVVPEKIAIDDLMQVKHVGVATSFDQRDLVLFDQMMQLMKPLAPEYRLFN VSRSEGKWGDVQLQAIQEYNKQQYPDAHIEWSKLSEGELYAALEEFVANHQVELIVVNTY KRRVLAKLFNPTMARRMLFHAGTPILVMHSNSSR >gi|228308199|gb|ACLR01000118.1| GENE 8 4194 - 4454 405 86 aa, chain - ## HITS:1 COG:no KEGG:PGN_0349 NR:ns ## KEGG: PGN_0349 # Name: ustA # Def: upregulated in stationary phase protein A # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 4 82 3 81 84 117 70.0 2e-25 MAKETISFNELRRIKDSLPDGSMHKIAEQLGLRVDTVRNYFGGANYEDGRGAGVHIEAGP DGGIVVIDDNTILNQARTIIGEEPVL >gi|228308199|gb|ACLR01000118.1| GENE 9 4551 - 6497 1920 648 aa, chain - ## HITS:1 COG:CC0533 KEGG:ns NR:ns ## COG: CC0533 COG3537 # Protein_GI_number: 16124788 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Caulobacter vibrioides # 240 646 290 755 770 126 25.0 1e-28 MKQRLAYFLHTTRRTILTTLLLLPLLLSSSCSKVGEGVFGSTPLLVDYVDVHQGTWDAEH SEEIFPIVQLPHSLLRIIPFKESLRSARIKGLPLYTPDIDGRPLFYLIPESAHANQDPSG RLSFDFQEITPYSYHLYLDELQVNVDFSLTSMSGLYDLSSRDYNGSDAHQLSLYIDRRDS TTWEQVADDALTAEVSYGGTTPTRIYLYLQLNTNIEQMTSAISPRDTTYECLTLRLQKPN KRIVAKYGISLISCEQAKRNLTTQIQSFEYAPLVKAARNEWQKSLRKVEVSGGTEVNMRK FYTALYRSHLWPVSISEDGRYYSPIDDSVHSDEGITQYSQDDLSYTYETNYPLLMLYEPD MMHEVIVSYLRAIRDSGGRLLKTLDLGSVIYTEESPLLFLLTDALAKGLLDEDIRQAFEV LRTAIDADPERRSGYKLWCLSQLANSLGYTALAREYSELSDTYVPVAGRLSAQQVASILE HPSDSAPILLPEGQINIDSLFSSSLHSLNVNPDLFAFLFTYNLMGRPHYAQKFVRHTIDY FFGVGSFGYPGPDDYGSLSASLVFAMMGLYPVAPGINGYSIVAPSFNEINVDMGGGRHLT IKAQGASQVNKYISDLTLGGRPHTVYWVKHSQIAGGGTISMFLSDADN >gi|228308199|gb|ACLR01000118.1| GENE 10 6494 - 6784 411 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470075|ref|ZP_04054984.1| ## NR: gi|228470075|ref|ZP_04054984.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 96 1 96 96 150 100.0 2e-35 MQRKDPKPLGEILSDWLSESPEVDQGLLELKALQYLRTRFYPLRRQIRELSISDHTLRMR ITSAGLRQEIRLTQQQLLEQINAHLQYDLIDEIIIR >gi|228308199|gb|ACLR01000118.1| GENE 11 7053 - 7406 279 117 aa, chain - ## HITS:1 COG:no KEGG:ZPR_0794 NR:ns ## KEGG: ZPR_0794 # Name: not_defined # Def: hypothetical protein # Organism: Z.profunda # Pathway: not_defined # 3 115 2 107 108 73 38.0 2e-12 MRVVRSRWIPFRGFSAINLFGVIFVRKDLPEEYLTNTHWLETIVRHERIHTRQMLELLVL PFYLLYIMEWLVRLAICRNADRAYRSISFEQEAYDHQDDPTYGQRRRPYAFLRYWWF >gi|228308199|gb|ACLR01000118.1| GENE 12 7766 - 7966 58 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNILGANSYEEGTTLLCMWSTMDKNQGFRPADHPRSATKVQKKVSETVIPPPRKQQTTPL FVCTSR >gi|228308199|gb|ACLR01000118.1| GENE 13 7984 - 9027 1460 347 aa, chain + ## HITS:1 COG:lin1396 KEGG:ns NR:ns ## COG: lin1396 COG0781 # Protein_GI_number: 16800464 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Listeria innocua # 246 332 34 120 128 65 40.0 2e-10 MINRSIVRIRVFQQLYQSISSGRLDVALADKSLTTSLRHTYYLYYYLLDLIRALAAYQRE LLEIRERRFLKSSDEVTPRRLSDMTLVKEIARCTEIQNPLDEMQRRWEQDEQLLRTLYNM VETDPSYSALPEDVSTLSMQEQCDYWGNLLKQLFRTAELNEHLAANSFYWADATAICERL EVEEMPTVDQVEATVERLKGSDDYRVIPFTNQPVVTIQDFALKTLRRGAKDGLELPGDLL PMFHSDRDRLYAHQLLSETLLHREEYDAMLTPRLDNWEQDRVALVDMILMEMAVAEALSC PDIALVVTINEYIELAKVYDNAKSASFINAVLDRLFTDLKGEGKLLK >gi|228308199|gb|ACLR01000118.1| GENE 14 9055 - 11106 1908 683 aa, chain + ## HITS:1 COG:TM1735 KEGG:ns NR:ns ## COG: TM1735 COG0795 # Protein_GI_number: 15644481 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Thermotoga maritima # 5 186 11 190 1074 65 27.0 2e-10 MQVRGMRLRPKIMYIFMVRSFLPLLLMTILICWFVVLMQFLWQHIDDLVGKGMDVGVLLE VIFYAGLYVLPTAVPLGVLLASLMTFGNLGERLELLAMKSAGVPLSKIMKPLVILVTCIA LGLFVYLDRGVQKASVRVYQILFSARYARPELELPKGIFFNGIDGYSIYVGDKDVATSTL YNVMIYDLSEQRAPRIILADTGRLLMDDSKLYLIMSLRSGESFEQLSSQTTLIPGSQASD ERPASYIKEHFTEKVIFIPFDANFEMMGDDYLKSQFVGKNLRELINYSDSTRMATDSVGR QVGSDVLFDIHSKLQPPGQADLGTMMPGANLQAAAWLKQDQLSHLPFAIVSARRLDHDEL LVSGYSDAAPTHYTLDTLMDRASDQDKLMGYKQALEWLDNLSSSVQIADTYYDDAASDYR VNAQEMHRKFTFPVACLLFFFVGAPLGAIVRKGGVGTPMVLAVLIFIIYYVIDTFGLKMI NSGQIPVWAGMWLSSAVILPLGAFLTYKASRDSATLNADAYVVFFRRFFHPNYARQLEYK EIIMEPATTEEVLHDISQLQRQMDALRGMTYARSKGLRLDCLPDFATAYQQLYEQLEETV ETLHNYPDKYVFAQLINIPLLGKTLASSLWQRKLYVWICIPLLPVSLPVMLYLAIALRRN ERQLRLMSPILNHIVKQIKSQTV >gi|228308199|gb|ACLR01000118.1| GENE 15 11138 - 12358 1494 406 aa, chain + ## HITS:1 COG:aq_350_1 KEGG:ns NR:ns ## COG: aq_350_1 COG0108 # Protein_GI_number: 15605862 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Aquifex aeolicus # 3 208 5 211 211 246 57.0 6e-65 MNQDFKLNSIEEAIEDFKAGKFVIVVDDEDRENEGDFITAAELITPEKVNFMMRYGRGVL CTPITEDRAAQLELNMQVHENTSLHETPFTVTVDLIGHGCTTGVSMYDRAMTIKALADPN TKPTDLARPGHVNPLRARNRGVLRRAGHTEAAIDLARLAGLQPVGALIEIINEDGTMARL PQLVEIAKQWNMKIISIEDLIAYRLKTDCIVEEGVRAKLPTEWGMFDIIPFRQKSNGLEH IALIKGDISTNKPTLVRMHSSCATGDIFGSLRCECGEQLHKAMEIIEQEGAGVIVYLNQE GRGIGLMDKIKAYKLQDEGLDTVDANLHLGHKVDERDYGVGAQILRAIGVTEMRLMTNNP VKRVGLEAYGLKVVETVPLEIKPNQYNAHYLHTKKVRMGHDLHNVK >gi|228308199|gb|ACLR01000118.1| GENE 16 12387 - 13193 1108 268 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470146|ref|ZP_04055055.1| ## NR: gi|228470146|ref|ZP_04055055.1| hypothetical protein PORUE0001_0970 [Porphyromonas uenonis 60-3] # 1 268 1 268 268 456 100.0 1e-127 MKKLILSTLLLLGVMTSVFAQEKYDLRLNLKKGQTFTYQVTANNPMTISMMGQQMEMKQT QTITYTYKVLDVKDGNYLMEININRVQATSSTTGEAMNMNVDTDSDDKDEMTNQLRKMVN QKVTQWVDAKLKPLGEPEGEAVDDLVKKGVITMAMVPAFFPAEPIAQGESFTVNSPLFSG EDASTKYEGVVTLVAVSDTDYTFRANGKTTANFEGLVIEGNAIDNIILDRKTGMIKNTFG TVSLRGSGNVQGAQTEISSNTITSIRLL >gi|228308199|gb|ACLR01000118.1| GENE 17 13412 - 13936 579 174 aa, chain + ## HITS:1 COG:aq_1354 KEGG:ns NR:ns ## COG: aq_1354 COG0319 # Protein_GI_number: 15606551 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Aquifex aeolicus # 23 146 27 150 150 69 34.0 3e-12 MQFNYYSDNEVLMPPIRRQIANRWMRRVCDEMNRTVGEINFQYTDDEGILKANRAFLQHD YYTDVITFPRESEQEGDDAIYGDILISIDTVATNAQELGVPFKQELYRVMIHGILHLLGI DDQTQSERELMRMAEDRALMQLVEMLEGRDYFLEQGGSKFFKHVDKVCAEDKAR >gi|228308199|gb|ACLR01000118.1| GENE 18 13958 - 14986 680 342 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 1 339 473 816 832 266 42 3e-70 MTSSSSLILGIESSCDDTSAAVLRGGLLCSNVIASQEVHSKYGGVVPELASRAHLQNIVP VVQQAVARAGVTLADLDAIAYTRGPGLLGSLIVGTNFAKGLSLALHIPLVEVNHLQAHVL AHFIAKPEEPHTPPPFPYLCLLVSGGNSQIVQVNAPDDMRILGQTIDDAAGEAFDKCAKV MGLGYPGGPIVNKLANEGDAERFHFSKPQVPGLDYSFSGLKTSFLYTLRDELAKDADFVA KNKADLCASLQKTVIDILMSKLLRASKETGIKHIAVAGGVSANTGLRDAYHAYAERYGWQ VYIPPFAFTTDNAAMVAMAGTFAYERGAYGSIDAVPFAKTTI >gi|228308199|gb|ACLR01000118.1| GENE 19 14997 - 15488 286 163 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 4 149 742 890 904 114 42 2e-24 MPTPQTTEEQLQRLIAHWLEQHESVSTCESCTGGYIASQLTSHAGSSHWFQGALVTYQIE LKERLAHVQAATIEQYGVVSREVAEAMASGARQACRSTIGIATTGVAGPAGGTAETPVGT VCIAIATPQGIYSERLQLTGSRQEIIRQTYCEIINRLYHLELE >gi|228308199|gb|ACLR01000118.1| GENE 20 15524 - 16945 1989 473 aa, chain + ## HITS:1 COG:no KEGG:PG1726 NR:ns ## KEGG: PG1726 # Name: not_defined # Def: PDZ domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 1 473 3 472 472 299 34.0 2e-79 MKRLYHTTLLLILALCSFALTVQAQKAYVGLEYQMSYNDNWGANRPVILTVYPNSPAAQT GLREGDIIEAINGHETIKMSEEDMIRELQGEGEVSDDLLLVVSNFAYHRVVRHLKSTAQP ADALTERDMARAFGMYSLEDESDILISYPISSGTEGKTDLINYETFGFVRTNKQHTNRDV LIEQQITEALQAKGLTYDPKNPDLLIDTYYSISENSAYDAAEARRSAVQTSLRIDPKARK LVELPILPMGSDKTLARFYLKFGVTIYSGVNERKMLWTSEAEELLSDDYTLTDYTALTVP VMLLQFPFTRYFNSLVVRFATHRYLSLGINYKANNISTIHSLPLHSPAAEAGLRAGDEIV AINGRPLGTADELSKGYLAFVKKSMSYRKHDHPFAIKDGPTNCRYWDSEDYARVAKLLDK DKYFGGFSYLFAFNPWITTAPRTGVTIDYLRDGVMQRVVVEPKLQEACYVTLE >gi|228308199|gb|ACLR01000118.1| GENE 21 16976 - 18253 1022 425 aa, chain + ## HITS:1 COG:VC0739 KEGG:ns NR:ns ## COG: VC0739 COG0809 # Protein_GI_number: 15640758 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Vibrio cholerae # 13 423 1 348 352 227 36.0 3e-59 MCDKPHTQHWVDIDINDYDYPLPDERIAAHPLAERDQCRLLLSDATGRLEDHTFAELPKL LPPHALLIRNNTRVIKARIFFVKATGARIEILCLDPYKPVSYEESLSSLGSCSWHCLVGN SKKWRPEQTISCTLPLAGGQTITLQANREADTPDVVTFSWSDETKSFGEILELCGQLPIP PYLNRETESSDLTDYQTVYARIEGSVAAPTAGLHFTPELDDQLLAEGHRITELTLHVGAG TFLPVKGRQVADHQMHSEYCSVPTATLETLLEHIDSPFVPIGTTSVRTLESLYWFAVALQ QAEQEGRDVAEPFHLDQWYSYRMHQSCGASLPSRREALEILLRYVRHKGLDRLTFSTALL IAPGYQYQMVDILVTNFHQPKSTLLLLVSALIGPHWRTLYEHALADAHYRFLSYGDACLL YRREL >gi|228308199|gb|ACLR01000118.1| GENE 22 18299 - 19159 971 286 aa, chain + ## HITS:1 COG:panC KEGG:ns NR:ns ## COG: panC COG0414 # Protein_GI_number: 16128126 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Escherichia coli K12 # 1 278 1 277 283 228 47.0 1e-59 MKVITTVAALQQELSKLRQENPSARVGLVPTMGALHAGHLSLVAAARKQYDIVVVSVFVN PTQFNNPEDLRTYPRKPEEDLARLRDGQVDIAFLPTVEEMYPEADTRQFDFGFLGETMEG AHRPGHFNGVAQIVSKLFMLVQPDGAFFGEKDFQQIAIIREMVRQLALPVEIHSCPIIRE ADGLALSSRNLLLTSEQRDVAPRIHDTLVASQALIPEHSPREVVDFVVSRLAEHPLLRPE YYQIVDGKTLRPLESWSDSSDPVGCIVCYCGEVRLIDNIHYKTSAN >gi|228308199|gb|ACLR01000118.1| GENE 23 19459 - 20664 1527 401 aa, chain - ## HITS:1 COG:no KEGG:PG0291 NR:ns ## KEGG: PG0291 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 30 400 15 360 361 179 33.0 2e-43 MQRIQSILIVLLALTLTLTAEAQNFDPLSATTTDSTRVATELPRQRPTARQRRAQKEQET QTDGVSIRAKNYADQQVKDTETAPWRRVIYRQLSIDSLANAPIFRPVRPSGQLQSLFSLL FKRFNDGSITVYEYEDLGYENLTPERQLRFEDFLDRFGIVYDKDPSQTGNRAFKILPVDI PTQSIHNYYVKEEYYYDVKTSDVSSQIIAICPVMDDEISMEGSVRIPLFWVKYSDVQPYL SQQPIMLSTKNNATTATMDDFFSLNLYRGQISMTLGGETAELNSEMSDSTAMAARQAFSN QIEGELKQFEESLYGTEYTKPEASDSDLQEGRDGEDDSELDTARARRSQELREGKSQRKA AKVTKAKKKSRTTKKATPKAAKAEQPKQSKSTTTRSVRNRF >gi|228308199|gb|ACLR01000118.1| GENE 24 20703 - 22253 1861 516 aa, chain - ## HITS:1 COG:no KEGG:PGN_1674 NR:ns ## KEGG: PGN_1674 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 515 1 515 516 592 57.0 1e-168 MAAGSSGNRNRQKMINLMYLVFIAMVALNVSSEVLSGFVLVERSLTNTIEGAQQSNDNIM KGLSAAYAKNPSKAEPWYRKGLALTAYADSLYNEIDQLRLLIAQEADGKDANPNDVARKD DMNAPTTVMLNPITRRGAKLRESIEAFRTYTTQMVRSDSRREHISEMLSTERSGGLSWEQ QIFENIPTIASLTMLTKLQSDIRSVEGDVLNDLVQNIDSGDLRVNKIAAQVIPRSQLVMQ GSQYEASIVLSSYDSTRVPKIVVNGTTLPESAGGIYRVTATKAGTFPISGYIETELPDGT AVKQPFQSEYYVTEPFATVAPTMMNVLYAGINNPISIAVPGVPSQNVTATMTNGTLTRKG NSWMAKPAKIGTPAVITVMAKQADGRNLKMAETSLRVRALPDPLPYIQYTDANGATKRFK GGRIAKRDLLTANGIGAAIDDDLLDVPYQVVRFQLLFFDSVGGVIPEVSNGPTFSARQRD KIRNMAKGKRFFVSEVTARGPDGIERQIPAIEVIVR >gi|228308199|gb|ACLR01000118.1| GENE 25 22308 - 23342 1229 344 aa, chain - ## HITS:1 COG:no KEGG:PGN_1675 NR:ns ## KEGG: PGN_1675 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 5 299 4 294 309 291 55.0 3e-77 MAKKYRRYKNGLEMYLSSKKGRRVLNFAYSWGAAVVILGALFKLLHLPFGNEMLFIGMIT EFLVFFISGFEQPEEHYQWEQVFPELDSKNPMDKQEMEARRQYLLRKAQEAAAAPAPSYA YPEEQHYEQPSSYAPQPQAQAGYVAPEGGYGAPASEVQVERLSAAIDQLANAASQLSRLG ELSQQMTDQWVAMQQDGRTLGESAVEYQMQMDTTSQHLARLNQIYESQLASITGQVATID QINQGLEHIKNMYQDSAIDSTTFRTQNERLTMQLSELNRVYARILEALTVNMGAPGMAGR PYQGGYEPSYYAPRQEYPSARPDYYASQPYQAPRNAGAPQEPQE >gi|228308199|gb|ACLR01000118.1| GENE 26 23396 - 24760 1713 454 aa, chain - ## HITS:1 COG:MA1951 KEGG:ns NR:ns ## COG: MA1951 COG1262 # Protein_GI_number: 20090799 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 237 449 118 311 311 96 33.0 1e-19 MVGCAPKRGSGVSAELVGVGLSSWSEPAPYGMVQVPQGHIVLGERDADTVWGLPAEYKAI SVDAFWMDQTEVTNAQWRQFVFYVRDSIIRERLADPLYGGNPLYKITTDKYGDPVKPYLD WSQPLPNPKRALEQELEAMESVYYTNPVTGERKLDPKQMLYKYEVYDYHAAALYRNNLQK DVRASKGVQEPVMISKDTAYVNDRGEVIRETITRQLASEYDFLNTYIVAIYPDETVWVND YPNSKNEIYTRTYFNHPRYDNHPVVGVSWEQATAFCHWRTDNYRKGLNLPNGAVIPEFRL PTEAEWEYAARAGRTNTKYPWNSEDLDSEDVCFLANFKPFEGDYAADGQVITSQVSTFSP NDYGLYDMAGNVAEWTSSSYFVSSYEMMDDVNPQMRYNAAREDNTMLRRKVAKGGSWKDV LRFIKSTRRIYAPQDEAHSYIGFRCVRSIINNSK >gi|228308199|gb|ACLR01000118.1| GENE 27 24958 - 25860 726 300 aa, chain - ## HITS:1 COG:no KEGG:PG0287 NR:ns ## KEGG: PG0287 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 4 300 23 313 313 232 41.0 1e-59 MRSLAQVDPLFSDYRRLQNYYNPAAIGLQKDLLLTAAYHQQWIGIEGAPANLFVSAHTEQ QWGKSYHGVGVVVAAQRAGLFTRTEAQAEYAFQLRWKGDKILSIGTGLGMINLLYDGTKA HIPDGGAMTPNDPSLPQTPVSGRTFDLSAGVLWHTPRYFIGFSGRHLTVPRITLDRLYYQ KVPIHINAVCGYNITPRGALLSWHPSLFASTNLTSWRVDVNLDVRLAQRWEAGLMYRPLQ AAGLRLGALFGKCHVGYLFEMPTSQLARGNWGSHELVITYALPMSSHKKGTNSYKSIRLL >gi|228308199|gb|ACLR01000118.1| GENE 28 26090 - 26311 392 73 aa, chain - ## HITS:1 COG:no KEGG:PGN_1678 NR:ns ## KEGG: PGN_1678 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 73 13 85 85 109 93.0 3e-23 MYWTLELASKLEDAPWPATKDELIDYAQRSGAPIEVIENLEEIEDEGEEYETIEDIWPDY PSKEDFFFNEEEY >gi|228308199|gb|ACLR01000118.1| GENE 29 26676 - 26906 157 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHSETLRYPRPHTSEEIKNASVENGNPPRSNQKIHRNFDLLLPKFHFILPNFYFAPPWRI FVCSLEILDFLGRRDE >gi|228308199|gb|ACLR01000118.1| GENE 30 26916 - 27209 87 97 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRRDTTSCATFLGIPPPHFVLQLRATSATGSDRCRKVIQITLLTPPFGQHQFRRTFHPLM HFTQFRLQIYSILSAKLLNSIRETTQISSFYSLTSNL >gi|228308199|gb|ACLR01000118.1| GENE 31 27304 - 27801 328 165 aa, chain + ## HITS:1 COG:no KEGG:PGN_1503 NR:ns ## KEGG: PGN_1503 # Name: not_defined # Def: probable ferric uptake transcriptional regulator # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 139 6 146 166 62 29.0 6e-09 MMSDLVSPFKAFLKQHGYQLTSERVEIAQVVGTQRRIFTTEELMAQLKEAGCHQSRGTVY STVRLLAESGLILQLPQSSEARYLTSEQASLYAVCRCRCCGAEVLYRQPRRLKALHHATT YRYRLTQPLLIFYGVCHRCESDTEKTNNKRLVNQAGRLQQAPTRR >gi|228308199|gb|ACLR01000118.1| GENE 32 27823 - 29112 1704 429 aa, chain + ## HITS:1 COG:PM0938 KEGG:ns NR:ns ## COG: PM0938 COG0104 # Protein_GI_number: 15602803 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Pasteurella multocida # 8 422 6 425 432 377 47.0 1e-104 MNKKKVDVLLGLQWGDEGKGKIVDVLTPGYQMVARFQGGPNAGHTLEFDGQRYVLRSIPS GIFQGNKLNLIGNGVVLDPVLLREEAEQLAQSGHDIKKRLIISRKAHLILPTHRLLDAAQ ELSKGAAKIGTTGKGIGPCYTDKVARTGLRIGDIERDFEARYKAVRDRHVDLLQKMGADL SKLPEMEEAFHKAIEYLKDYQFVDSEILINEALEEGLNVLAEGAQGSLLDVDFGTYPFVT SSNTVSAGCCIGLGISPKAIGRVYGIFKAYCTRVGSGPFPTELQDEVGHLMADRGHEFGA VTGRPRRCGWIDLVALRYTIMLSGVTHLIMMKSDVLDTLSTIKACVAYRIGDKEYKHMPY SLDADIEPIYQELPGWQTPLDGCRSEQDLPDAFRHYVAFLEAQLRVPISIISVGPDRSQT IMRKLNNEL >gi|228308199|gb|ACLR01000118.1| GENE 33 29102 - 30421 1173 439 aa, chain + ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 1 426 1 427 431 231 33.0 2e-60 MNYKETVDYLYQATPCYQNQGGDAYKPGLERMQQMCDAIGNPQRYIRTIHVGGTNGKGST TSLIASVLTAAGYKVGLFTSPHLVDFRERIRINGEMISEEEVVSFVERTRPLIESVGPSF FEYTTLMAFEHFHTHEVDYAVIEVGLGGRLDSTNVILPKLSIITNISLDHTQYLGNTLEA IAYEKAGIIKEGVHAVIGNAGGSVRELFEQVAEERHAPITFCEDEHTIKRYDELHPGMRL DTVDYGLLETPLSGDAQLENAHTVLTALRILDDKVLDKPLTHDEVARGFAELYKLSGLRG RWETISTNPHIVCDTAHNPAGIAVVAHQLEEATYDHLYIIVGMSADKDIDTNLALLPSSA RYYFCTTASQRTLPAEELQQRAEAIGLRGRAYPSVEEALQEVLAHANAGDLIFVGGSNFI VAELLKSYPMTQKERPTHQ >gi|228308199|gb|ACLR01000118.1| GENE 34 30480 - 31889 1541 469 aa, chain + ## HITS:1 COG:no KEGG:PGN_1506 NR:ns ## KEGG: PGN_1506 # Name: not_defined # Def: putative transporter # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 469 1 467 467 578 68.0 1e-163 MTESTQLKTLRDSAGMRWLALALVALTMFFAYMFVDILSPVKTMVESELNWSSTVFGTYG GSEFFINVFFFFLIFAGIILDKMGVRFTFLLSGSLMVIGALIKLYALSPAFNAGGFGYSF FNSFWTSVPASAKLACVGFALFGCGTEMGGVTVSRSIVKWFEGKEMALAMGIEMAVARLG VFAVFWLSPMIAEQYGTVRASVFFGTCLLVVALLLYVVYFFMDKKLDQQLEAAHAAVEKE EEEPFKFRDLGHVFGNSMFWIVAILCVLYYSAIFPFQKFATEMLVSNVGFEQDVAAKIFS LFPVGAMVITPILGFYLDARGKGATMLMIGAILMIVCHGTFAFFPFSSVSHGLATTIAII AIVVLGISFSLVPAALWPSVPKIIPGKVLGSAYSAIFWIQNIGLMSVPMLIGAILDANNQ NVAPGQPKDYFQAMLVFTAFGVVALITAILLKAADKKKGYGLELPNIKK >gi|228308199|gb|ACLR01000118.1| GENE 35 32072 - 32692 696 206 aa, chain + ## HITS:1 COG:no KEGG:PGN_0809 NR:ns ## KEGG: PGN_0809 # Name: not_defined # Def: putative TonB protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 197 1 192 230 124 44.0 3e-27 MEIKKSPHADLRRTIPLSLAMGLVLALGILYTALEWTSAKKDNEDENTSLNIADMEDALI INEQQQEQPEPEPEAPQEVVEVALPEEFKVVDDNKEVAKISIVSADQDRELPPPPVIVQP AQTVVEEPEDQIFEIVENPAVPPTGDIPSLLKWIASHIEYPQSALDNGVQGKVVLRFVVE KDGSIGDILVARKVDPARRQRGCSRA >gi|228308199|gb|ACLR01000118.1| GENE 36 33069 - 33308 262 79 aa, chain + ## HITS:1 COG:PAB2389 KEGG:ns NR:ns ## COG: PAB2389 COG0142 # Protein_GI_number: 14521122 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Pyrococcus abyssi # 13 76 73 137 346 70 44.0 8e-13 MQAFLRLDAPLVVSPAVALEVFHNFTLLHDDVMDNSPVRRGKPSVYAKYGLTPAILSGDA MLILAYQMLTEDVSPEMLV >gi|228308199|gb|ACLR01000118.1| GENE 37 33313 - 33513 161 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470142|ref|ZP_04055051.1| ## NR: gi|228470142|ref|ZP_04055051.1| polyprenyl synthetase [Porphyromonas uenonis 60-3] # 1 66 1 66 66 119 100.0 5e-26 MRDFNKMATLVMEGQQLDLEYERLDNVSKEQYLEMIGYKTAVLIATATRFGANPLKGGYR AGRARL >gi|228308199|gb|ACLR01000118.1| GENE 38 33980 - 34771 530 263 aa, chain + ## HITS:1 COG:VC0103 KEGG:ns NR:ns ## COG: VC0103 COG0084 # Protein_GI_number: 15640135 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Vibrio cholerae # 2 260 1 254 255 208 40.0 8e-54 MLIDTHTHIYGTEYEADRDAVISAAHEAGVGYLVMPNVDLTSLSLLVDTHRSYPDRTAMA LGLHPTSVGTDYAEQLRQLRQYIAESSEEIVAIGEIGLDFYWDRTYVEEQQRALIEQVGW AIELDLPVILHVRSALDETIDLLLSHFASDQLRGVFHCFEGEEAQLQRILEHLPLMMIGV NGNVTYKRSRTAQLLSQIPLDKMLLETDAPYLAPIPQRGKRNEPAYLVHTASYVADQIGI SLESLAEHTTSNAIRLFSLDLIA >gi|228308199|gb|ACLR01000118.1| GENE 39 35100 - 35933 1132 277 aa, chain + ## HITS:1 COG:FN1312 KEGG:ns NR:ns ## COG: FN1312 COG0811 # Protein_GI_number: 19704647 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Fusobacterium nucleatum # 77 268 4 198 202 75 26.0 9e-14 MKKLFATLSCMALLTLGLTQMTYAQEAAPAAGDSATTEEVTPSTVDEAVEADMAVVMEQD ATADQDQGFHQALKKKFIEGGADFMALIALVLILGLVLCLERIIYLNLADNNYEAFLRKL EEALNRGDMNGAKEIARNTRGPVASIAYQALMRFDQGIDVVERSIVSYGGVQGGLLEKNL SWITLFIAIAPSLGFLGTVVGMVMAFDKIEKVGDISPTVVAGGMKVALITTIGGLIVAMI LQIFYNYILSKVESILNRMEDASITLVDFAIKYNLHK >gi|228308199|gb|ACLR01000118.1| GENE 40 35943 - 36413 467 156 aa, chain + ## HITS:1 COG:no KEGG:PGN_0805 NR:ns ## KEGG: PGN_0805 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 156 1 156 156 139 50.0 4e-32 MAVTKIRKISSWTLLVLIVVSVAVCLAFFVGGVELDASGNKVYANTDLVLYWGYALVALT LIATLVFAIASLIQGFRTNPKKALQGLLVFILLIVILGVSYAIGDSTPMSVNEDSAQYNT PGWLKTIDMCIYTAYTLVVLIIVGVIWGGIRKSLSK >gi|228308199|gb|ACLR01000118.1| GENE 41 36438 - 37043 652 201 aa, chain + ## HITS:1 COG:no KEGG:PGN_0804 NR:ns ## KEGG: PGN_0804 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 201 1 202 204 241 62.0 1e-62 MSRTKKKVPSINGSSMADISFILLIFFLITTSMDTDQGLKRRLPPLVPPEQQQQDIEIRD RNVLRILVNRSDQIAIIKKDASGRDDMAIVPLDRLKDRTVEFILNPQDLPHLPEKETRYI AGLGDRVVTTSSYAISLKNEVETSYQMYIDVQNELLRAYNEVWDIVAQKEFGQPYDDLTP DKQKIVVDCYPMHISEMPLNS >gi|228308199|gb|ACLR01000118.1| GENE 42 37067 - 37543 570 158 aa, chain + ## HITS:1 COG:no KEGG:PGN_0803 NR:ns ## KEGG: PGN_0803 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 153 1 153 157 220 72.0 1e-56 MGKFKQAGGRTMPELNTSSLPDLIFAFLFFIMMVTSIREVTPKVAFQNLPTATELTKLEE KSLVSFIYVGKPIPELQAKFGTAPAIQLNDQITTDPSAVYGFVKDEEAQIQDERRKLMTV SIKGDASTKMKIIADIKNELRRADALNISYSARPKRDN >gi|228308199|gb|ACLR01000118.1| GENE 43 38128 - 39711 1709 527 aa, chain + ## HITS:1 COG:BH0109 KEGG:ns NR:ns ## COG: BH0109 COG0008 # Protein_GI_number: 15612672 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Bacillus halodurans # 2 493 5 472 485 301 38.0 3e-81 MVRVRFAPSPTGPLHIGGARTALFNYLFARHHGGTMVLRIEDTDSKRFVPGAEDYIIEAL QWLGIEIDEGIGSDNQPYGPYRQSERREIYREYVQQLIERGAAYYAFDTVEELEQARQEM PNFSYDAATRSKMRNSLSLLSEEVTRLLESGAEYVVRFKVDPDREVEVDDLIRGKVVISS TQLDDKVLYKSADDLPTYHLANIVDDHLMQITHVIRGEEWLPSAPLHVLLYEAFGWQDSM PQFAHLSLLLKPQGSGKLSKRDGDKLGFPVFPLEWCSPEDGSISMGYREQGYLPEAVSNF LALLGWNPGTDQELFADPQKAISSELISAFSLDRCSKSGARFDFEKAKWFNHQYIQIVPV ERLVAYLRPALSERGLNPTDEQLRDVLLTVRDKAQLLPDLLPEVLYFFVAPTEYDAKGLK KHWKAETPGYLQQMITLLEGLPSDASLETIEQALYDKINGDELPMGKVMNGIRMALVGEP RGARIHEIIHLLGIPESVRRMQRAIAEIQLSLTRTAVINELNFRYND >gi|228308199|gb|ACLR01000118.1| GENE 44 39715 - 40176 503 153 aa, chain + ## HITS:1 COG:no KEGG:PG1156 NR:ns ## KEGG: PG1156 # Name: not_defined # Def: S4 domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 1 109 1 111 150 74 44.0 1e-12 MSLRINKLLSDAGIGSRREVEKYIVAGRVMLNGERAELTDIVVEDDIVTLDGEELPVNDI LREALSMKHYLEAQQEDRESREAAREYSSRGGGRPNRPAKSGPKRMRSDRYSDEPREPKG HAKGNKPYKAKGGDAHGRRRDNRGKDFNGDDRW >gi|228308199|gb|ACLR01000118.1| GENE 45 40237 - 40812 419 191 aa, chain + ## HITS:1 COG:RSc2395 KEGG:ns NR:ns ## COG: RSc2395 COG0406 # Protein_GI_number: 17547114 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Ralstonia solanacearum # 1 174 1 173 192 67 29.0 1e-11 MQITLVRHTAVAPEWQVVCYGNTDIPLATTFEEEAPRVAAQIDLSLYDRILSSPLSRALR LARYCVPEGTHIEVDDRLKEMNFGDWEGQPWTSILETEQEVSAFFEYFIDRPAPRGESLR DLAQRVADLLDELYRSGAQRVLLFSHGGVVNAVRSMAGRITLQEAFAQILPYGSVTTIEL DDLIHIDQIRL >gi|228308199|gb|ACLR01000118.1| GENE 46 40864 - 42453 1188 529 aa, chain + ## HITS:1 COG:CAC2760 KEGG:ns NR:ns ## COG: CAC2760 COG0642 # Protein_GI_number: 15896016 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Clostridium acetobutylicum # 285 516 253 479 482 110 31.0 8e-24 MEKRIISTMIVLLVAIATVTILLQLRNFKYIADLYNEYFETLAQRALSEVSRSLEQDEVE RQLRMLLTQDDVQRLGLSDDTLQSPGVASSAFSSSYMSDGSEVWNGYGNAERATCPPWAE ARVKGQSEEHTKVLQSKLLNTYFYHRSLLDETVLRTILQRNNEPLRQRVSVSFLQRALAH ELAQVGITEAFEFTLYDSDGQAVYTTVSDRYEHSLRPPLVVRKDLFASSSAYIETESGEL DLPYIEVTFPEHSRHIGTLIYTLPSAGTLLVIIVLSVLAVTILLRHKHYLRERKDFVSNM THELKTPVSSIRLACEMLEDPSLEQSEERRKRITQTMLKEVDRLTLLVDQVLQSSMMERG VLKSYPVELDAHEEIRDLSSAYAMKINSAHGELVLALEAEHHMLMCDRIAFQNVISNVID NSLKYRKEDTPPIITLTTHSDNANLIIDIEDNGIGISRQDRGHIFDQFYRVHTGDRHDVK GFGLGLAYVQRAIQAMGGEVKVFSKLGVGTKMSLRIPYLTKSKSKIVNK >gi|228308199|gb|ACLR01000118.1| GENE 47 42528 - 43259 1008 243 aa, chain + ## HITS:1 COG:CAC3663 KEGG:ns NR:ns ## COG: CAC3663 COG0745 # Protein_GI_number: 15896896 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Clostridium acetobutylicum # 7 229 4 222 225 131 36.0 9e-31 MNNKEIRVFLCEDDESLGIMLQEYLIAKEYEVDLFTDGEMGLEAFRQKKYDLCLIDIMMP KMDGFELAKEIRTLEPEIPIIFVTAKDQKKDILAGFKLGADDYITKPFSMQELEARMEAI MRRIIGDGHEHQQFYQLGKLLYDTKKQSLTTEDGQVFTLTTKENELLTLFCVYANETLER EYALRTIWSDANYFNARSMDVYVTKLRKILKVDPSLEIKNVHGKGYRLVTPIQEISEDQI KRV >gi|228308199|gb|ACLR01000118.1| GENE 48 43366 - 44730 1588 454 aa, chain - ## HITS:1 COG:jhp1447 KEGG:ns NR:ns ## COG: jhp1447 COG3004 # Protein_GI_number: 15612512 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Helicobacter pylori J99 # 23 449 26 438 438 252 39.0 1e-66 MSQSSGILRPVRRFTIRKVDSSVVLFLATIVALIVANSPLRELYHTLLAIPINLNVLGLD IFQAHGEPMSFLVFANDVLMVFFFFVVGLDIKQQLLVGELSSVKKAMMPVVGAIGGMIMP IILFWLIAPAGDASRGAAIPMATDIAFVLAVLMLLKDHVPVSLRVFMTTLAVADDIGGII VIALFYSTGINLLMLGLGLAVVAILALLGRAGVRHIGLYMIGLFVVWFFFLQSGIHTTIA GVMVALAMPMTTSVSRHQLGSLAGAISKMLPTEESAKKGQTTHLEGADIAMINSLRHAAA SAIPPVQRLEHALTGWVNYLILPVFAFVNAGIDFSTFSMGDISTLPFAVMLGLFIGKPMG IFLFTYVYILLTQHKWSDGVYPAMLFAVSILGGIGFTVSMFIASLSYDVHLHLDWLSEAK LGILTGSLISGIVGYITVLAVGNRHQRRKAKQAN >gi|228308199|gb|ACLR01000118.1| GENE 49 44797 - 45030 58 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLPALRPHSLTVPSPLPPVSYRRNWSFIPKKLEFHTEENGFSWGRKWIFMGMKIFCHLEG TEIGREVRGNSCTPKSC >gi|228308199|gb|ACLR01000118.1| GENE 50 45215 - 46537 1081 440 aa, chain - ## HITS:1 COG:no KEGG:PGN_0262 NR:ns ## KEGG: PGN_0262 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 426 1 408 422 132 29.0 2e-29 MITTEQWLLEVAEQSQLAQTTCQQLWSDLTSLLIGRLTQGSSSYMRSVGLWSAESHSARI ALLPSGERYLMPPSVMPRITNQEQPLSAEEIGELLAKGAIQIPQTLQSFYDSVTKLFEMH ERLGHTLEWTPLGTFAPQSITGEDESSETSYAFTPSDELLRQVNKPFEMFAPTLLKEGVQ WPDVEEQPAESLEQACPSIISSRIAESTATPQPASTPPAWTPQSQAVTPATPTPPPFSAS ESSLPTAKATTPPPPPASESNEPEAVIATPPPYRREEPQERKPRKLWLWIVIPLVAVLVM ALLLWFFAFGKQEMPSSRTTPPPSTMIPVEATPTIDTVAPIDSVAPVADTTAQQEILTTV ILGNGDYLARYAHRYLGRSEYWIYIYLANKEQIKDPDNIPLGTEIKIPSPQSVGITGNQE ADLATAKRLIHDYYSTTAKS >gi|228308199|gb|ACLR01000118.1| GENE 51 46534 - 47865 1102 443 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227413264|ref|ZP_03896450.1| SSU ribosomal protein S12P methylthiotransferase [Dyadobacter fermentans DSM 18053] # 1 432 6 430 436 429 48 1e-119 MIANQIDVISLGCSKNLVDSDALMRRLAQFGYTLRHDPEELTGEIAVVNTCGFIQAAQEE SINLILSLIEAKKEGRIRSVYVMGCLGERFREELTAELPEVDKIYGKYDWKQLISDLGPA LSADSATPLSYRTPPPSVTPRHYSYIKISEGCDRTCSYCAIPLITGRHHSRPMEEIVREV EGRVSAGCREFQIIAQDSTYYGVDLYQEQAIAPLLDRLAQVNGVHWLRLHYAYPNHFPLA LLDVMAQHDNICKYLDLALQHSSNHMLQLMRRQITREETVALLERIREQVPGIALRTTMM VGHPGETDEDFADLLDFVSQMRFERLGAFQYSHEEGTYAYKHYQDDVPPEVKQERYDALM SLQANISASVNSRRVGTSLEVIVDREEEGYYVGRTQYDSPEVDGEVILSSDRPLHVGSFY RAEITGVEEYDLIATTSPEHLIL >gi|228308199|gb|ACLR01000118.1| GENE 52 47884 - 48843 796 319 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 7 319 3 324 336 311 48 1e-83 MGLFGLFSKKKKETLDTGLEKSKTSMVDKLTRAVAGKSKVDDAILDDLEDILVTSDVGVD TTLKIIKRIEERVARDKYVGTSELKSILRDEVAALLAENGTTDGESFTLPAEAHPYVIMV VGVNGVGKTTTIGKLAYQFKQQGKRIVLGAADTFRAAAIEQLEIWGERVGVPVIKQQMGS DPASVAFDTLQSAVAQNADVVIIDTAGRLHNQVSLMNELSKIKRVMAKVVPDAPHEVLLV LDGSTGQNAFEQAKQFTAATDVSALAITKLDGTAKGGVVIGISDQFKVPVKYIGLGEKIE DLQVFRKREFVDSIFGDEL >gi|228308199|gb|ACLR01000118.1| GENE 53 48873 - 50039 1419 388 aa, chain - ## HITS:1 COG:sll0873 KEGG:ns NR:ns ## COG: sll0873 COG0019 # Protein_GI_number: 16330194 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Synechocystis # 9 387 17 386 387 345 45.0 1e-94 MLPMQPHKITTPYYLLEESLLRRNLELIRSVAERAGVEIILAFKAYALWRTFPIFKEYIH ASTASSPWEARLGYEEMGAPVHAYTPAYSEENIADFVRYSSHITLNSPTQWQRFGPASPY AAEHISYGLRLNLAYSPVKTEIYNPALPGTRFGVSAETLQQMEQEGALIGLEGVHLHVLC EGDDEQLELVLERLEERFGFILDKVQWLNLGGGHLMTHREYDTEHLVVLLRAFRERHSNL RIIMEPGSAFAWQTGDLYAQVVDIVTNDGIKTAIMNVSFACHMPDCLEMPYHPVVEGATQ CDTPEPGTHSYRLGGNSCLSGDYMGYWTFDHPLEIGETLVLKDMLHYTTVKTNMFNGVQH PAIALRHLDGSVETLRSFDYSDYKSRMD >gi|228308199|gb|ACLR01000118.1| GENE 54 50372 - 51007 661 211 aa, chain + ## HITS:1 COG:VCA1060 KEGG:ns NR:ns ## COG: VCA1060 COG0108 # Protein_GI_number: 15601811 # Func_class: H Coenzyme transport and metabolism # Function: 3,4-dihydroxy-2-butanone 4-phosphate synthase # Organism: Vibrio cholerae # 14 210 16 212 218 259 64.0 3e-69 MGQTKTISPAVEARIQAAVQALRDGRGILLVDDENRENEGDIIFSTERLTPQNIALMIRE CSGIICLCLKPKKCQELNLPQMVQHNTCVNNTAFTISIEAKEGVTTGVSAHDRYVTITTA ARADAKPEDLVHPGHVFPLQAKEGGVLERRGHTEGSIDIVSIAGLGDTAILCELTNEDGT MARMPEIQKFGAAHDMPVLTIEDIVAYRQQS >gi|228308199|gb|ACLR01000118.1| GENE 55 51092 - 53350 2998 752 aa, chain - ## HITS:1 COG:BH1242 KEGG:ns NR:ns ## COG: BH1242 COG0317 # Protein_GI_number: 15613805 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Bacillus halodurans # 40 751 23 726 728 419 36.0 1e-116 MEDIYPVDYSNSTLSDEEMIQREYDALIYDYEHSNHRKKVEVIQRAFTFARMAHEGVRRK SGEPYIMHPLAVARIVCREIGLGSTSIVSTLLHDVIEDTEYTEEDIEQLFGPKVAQIVVG LTKISSEILTERNIESLQAENFRKLILTMNADIRVILIKIADRLHNMRTLSSMPEHKKLK ITGETLYIYAPLAHRLGLFAIKTELEELVFKHEHPKAYEDICNQIIDTEQSRAELFKQFS TPVHPLLKARGLDYEMKTRVKSCYSIWKKMQKKQIPFQEIYDLYAVRIIFEETPGLNVKE TCWGIYTDITSLYRVNNERTRDWVAQPKSNGYRALHFTVMGPTGKWIEVQVRSRKMDEID ERGLAAHWKYKSDGVEEDQEITKFLDQISELLENPDSSAMDFLDTIKLNLYGDDIMVFTP KGDPITLPHESTPLDFAYALHSTLGQTCIGAKVNHKLVPLSHPLQSGDQVEIISSNNQKP SALWLKYVKTAKAKSKINEFLRVERRKLISQGEESVINYFEQHDLSVDAGHMDLVAALFG FHKREDLFYAVGSGTVNLVESLYKRIKSSKSNRFFKSVKEALIGKQESMPKPTESISQIS EIDYKKPYLLQSDAIKSNYVMADDCHPLPGDEVVAFVIDNQVVVHQRTCTEAMRLKSSTG NKLLSTIWGDQGDTLFTGSIMIEGIDSKGILNGIVQVITEDFLINIASVQLQTQDGIFGG KVGLEVHSAEQVEQLCAALKQAPGISNAYRIY >gi|228308199|gb|ACLR01000118.1| GENE 56 53388 - 54062 613 224 aa, chain - ## HITS:1 COG:NMA0943 KEGG:ns NR:ns ## COG: NMA0943 COG0132 # Protein_GI_number: 15793901 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Neisseria meningitidis Z2491 # 16 221 6 209 215 189 48.0 3e-48 MNSDAMQLVSPPNRIYVCGIDTDIGKTYGTAFLIRTLREAGHTACTSMKLVQTGCHEISE DIETHRRLLGEPLSEWDRQGLTCPYLYSYPCSPHLAARMDGGEIDPERLNEATRHLQELG AKPLLVECAGGLMVPLTEQLLTIDYIAQQEDPQVALVTNGKLGSINHTLLSIDACMHRGI EVRYLIYNVYPEQDATIERETIAYLQGWLEEHLPSCLFMKMPIV >gi|228308199|gb|ACLR01000118.1| GENE 57 54520 - 54711 145 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSIPYSSKRIVLSGLIYATTEEIKNYSVDISHSSVRNEKILRNFEIFLPKFHFILPNFYF GPP >gi|228308199|gb|ACLR01000118.1| GENE 58 54832 - 55083 266 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470063|ref|ZP_04054972.1| ## NR: gi|228470063|ref|ZP_04054972.1| transglycosylase-associated protein [Porphyromonas uenonis 60-3] # 1 83 1 83 83 113 100.0 4e-24 MGLLWSLLIGLAAGAIAGWIMRGRSLGCLWNIIIGMLGGLVGGWVYSFFGATAGDSWWAQ LVCAVVGACVILLVVGLFNKRKR >gi|228308199|gb|ACLR01000118.1| GENE 59 55123 - 55287 161 54 aa, chain + ## HITS:1 COG:alr1174 KEGG:ns NR:ns ## COG: alr1174 COG1592 # Protein_GI_number: 17228669 # Func_class: C Energy production and conversion # Function: Rubrerythrin # Organism: Nostoc sp. PCC 7120 # 2 54 181 233 237 85 58.0 2e-17 MKKYVCDVCGHVYDPAEGDPDSGIAPGTPFEDLPDDWECPLCGVSKDQFSPMED >gi|228308199|gb|ACLR01000118.1| GENE 60 55429 - 56520 1068 363 aa, chain - ## HITS:1 COG:BH0931 KEGG:ns NR:ns ## COG: BH0931 COG1194 # Protein_GI_number: 15613494 # Func_class: L Replication, recombination and repair # Function: A/G-specific DNA glycosylase # Organism: Bacillus halodurans # 1 262 10 267 372 221 43.0 1e-57 MSTLLTKLHSWYQENHRKLPWRDIHDPYRIWLSEVILQQTRIDQGTSYYLRFVEHYPTVS DLAIAPLDEVLKLWEGLGYYSRARNLHRAAQLIVHELGGTFPADYQSVRALPGIGDYTAG AVLSFAYDQPYPAVDGNVLRVLSRLYASEEPIDTTQGKKYYTALARQLVEKAPHPGLHNQ AMIELGALICTPQLCDCTRCPVRSECPSADSPERASLPRKALKLSVQPRHLGYLFVLKRG LDQWQTILYQRPTGDIWAKLYQPTLLYDQPVAPQEELLLQPLPEPPAALAHCPLRPFRRY KHRLTHRQLYIDCYYTILPDSSTPRLPDGGVWVPLHDESEWLALPITLKKALQQLTSHIE TAK >gi|228308199|gb|ACLR01000118.1| GENE 61 56534 - 57517 1328 327 aa, chain - ## HITS:1 COG:TM0209 KEGG:ns NR:ns ## COG: TM0209 COG0205 # Protein_GI_number: 15642982 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Thermotoga maritima # 4 326 1 319 319 296 50.0 3e-80 MNRIKRIGVLTSGGDAPGMNAAIRAVARASLYHGISVCGIIKGYTGLIENNVIELTVENV SNIIQRGGTILKTARSHEFETPEGRARAYQVIQENEIDGLVVIGGDGSLTGARLLANEHN LPTVGIPATIDNDLAGTDLTIGYTTALNTIMDAVDKLRDTASSHERIFFVEVMGRESGFL ALNGAIATGSEGALIPEDPTSTESLKKMIESGFRKTKSSSIILVTESGEREGQTLFIADD FKRRYPKFDIRVTILGHLQRGGIPCATDRIMGSRMGAAAVQALLDEQRNVMIGYDNDEIV YVPFVKATKKQKRIDPELIDLLHMLSI >gi|228308199|gb|ACLR01000118.1| GENE 62 57584 - 58387 679 267 aa, chain - ## HITS:1 COG:lin1584 KEGG:ns NR:ns ## COG: lin1584 COG2003 # Protein_GI_number: 16800652 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Listeria innocua # 22 241 3 212 224 127 31.0 3e-29 MKADSPLQPAKPLAKVSTKTTIKQWSEEDRPREKLLRLGARHLSDAELLAIFINSGTEKD SALDLAKQIMTGLDNDLGQLLEIDHAYLTGCEPGEKKKRFAGLGDARACTILAAIELGRR LRDTPPPRRTPITCSLDAYRVLRRHLESLDHEELRCLYLDASGRVIKDELVSSGGVSHAV ADLRLILAPAITHYASAIILAHNHPTGHLQPSAEDMDLTKRVKQVASVCNIRLNDHLILG RYHASVTSDGERSHYLSFADNGLLASL >gi|228308199|gb|ACLR01000118.1| GENE 63 58384 - 59355 768 323 aa, chain - ## HITS:1 COG:TM0525 KEGG:ns NR:ns ## COG: TM0525 COG0324 # Protein_GI_number: 15643291 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Thermotoga maritima # 15 294 3 277 305 188 38.0 1e-47 MSCCTGKLKEVSPTLIVLTGATGVGKTSFAIALARRLGSTAQPLPILSADSRQIYRGMPI GTATPTEEERRLAPHYFVATHEITEPYSAGRYELEVIKLLEQLFREQTVVILCGGSMLYI DAICSGIDDIPPVDLAVRAQLHERYQREGLAGILAELQLVDPLYYNKVDHCNHRRVMHAL EVYLSSGAPLSSYHSGEDADRPFRLLTYALTRPREELYQRINQRVEMMIEEGLVEEAKAL YPHRQLNALNTVGYKELFAHFDGQYDLAEAIRLIQRNSRHFARKQLTWQRRHHEFAPLDL STPWEPLLERIQQDLLTQPQTTR >gi|228308199|gb|ACLR01000118.1| GENE 64 59374 - 59919 698 181 aa, chain - ## HITS:1 COG:no KEGG:PGN_1625 NR:ns ## KEGG: PGN_1625 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 180 1 180 189 71 24.0 1e-11 MIHHYHVTSEAEETFSLDFEIQADTTFAQLMDLLIDTLDFDPASIGMFYLCDDRWEEIGQ VASNDFFETDAGNQYDIESSRLEDLLDETGARMRYLFDLFEDRYLRLQLVKIHSGSLYSP QIISLEGKKPRQTNPEEFVGSLGGDALSGDTPLGMMDEAFGEELFNADELSSDGFSIVDE E >gi|228308199|gb|ACLR01000118.1| GENE 65 59960 - 60583 908 207 aa, chain - ## HITS:1 COG:alr5287 KEGG:ns NR:ns ## COG: alr5287 COG0302 # Protein_GI_number: 17232779 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Nostoc sp. PCC 7120 # 21 205 44 229 235 225 59.0 5e-59 MEEPQKILHTNQNYVVSDFLSESQLERMKGHVNALLTELGEDPTREGLLKTPERVSKALH FLTKGYQEDPLAILRAATFREDYQQMVIVRDIDFYSLCEHHMLPFFGKVHVGYIPNKYIT GLSKIPRIVDVFARRLQVQERLTTQIKDCIQQALSPLGVIVVIEAQHMCMQMRGVQKQNS FTTTSDFTGAFKESKTREEFFNLVRKS >gi|228308199|gb|ACLR01000118.1| GENE 66 60656 - 61132 495 158 aa, chain - ## HITS:1 COG:no KEGG:PGN_0666 NR:ns ## KEGG: PGN_0666 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 4 156 1 165 168 100 40.0 2e-20 MRLLAPIRHSLVLLLSVTVLSGSLVAQERTQEQDIFAQITAQSSGGNVTITQPNWLRNLV GKTTFHTARSSVRTGYRIQVYTSNMRGAKQEAYRLASQVRGAVPELSAYVTYSAPFWRLS VGDYGSRQEAQQQLNALRASHPRLMREAYIVREKLRSH >gi|228308199|gb|ACLR01000118.1| GENE 67 61129 - 61893 1054 254 aa, chain - ## HITS:1 COG:FN1366 KEGG:ns NR:ns ## COG: FN1366 COG0149 # Protein_GI_number: 19704701 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Fusobacterium nucleatum # 4 252 2 249 251 230 46.0 2e-60 MDKRTLIVAGNWKMNMTLDAGLQLITEIKEQVAKLSNPCKVILAPPYIHLGAMKGLLAGS SIEYAAQDCSAHEAGAYTGEVSAEMIRSCGCTYVIIGHSERRAYHKESAELLAQKIDQAL AHGLKVIFCVGEQQAEREANRYFEVVDEQLRGSLGHLSHEQMEQIVLAYEPVWAIGTGLT ATPEQAQEMHQHIRQTVASLFDKKLADLTTILYGGSCKASNAEALFSQPDVDGGLIGGAA LKADTFLPIITANK >gi|228308199|gb|ACLR01000118.1| GENE 68 61910 - 63211 1471 433 aa, chain - ## HITS:1 COG:no KEGG:PGN_0664 NR:ns ## KEGG: PGN_0664 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 6 417 1 403 430 317 41.0 8e-85 MSCQRVQYILSELSRILLAALLLFSGFVKGVDPIGGAIKIEEYLRVMGLGSLQAMAPALS VALCSFEFLLGGFLLMGLWRRFTAWATTLFMGVMTLVTLYLALFNPISDCGCFGDALKLT NWQTFGKNVFFMAVTIVYLLTYRKASRPLRGITGSVATALLLLGWGIFVGGNLRHLPLID FRPYKVGASLRELTMIPENAPQEEIEYLFIYEKNGLRETFNMEELPDSTWTYIDRQERVI KEGYKPPVMDFAIYAGGSSQQATEREVTQTMLLNESPQIWVITPNWETIPIQMGRKLNAL YDWAESVGVAMYGISGSTPEERGRWRNKTAAAYPLYFCDGTTIKTMARAQPSVILVSDGV ILDKRAARDLPDKYTDQDYEKLSALLRQAPHAGLHIERWGLLVAWIIFCLVMLIQSVQWE DKSKYSEYQIKTK >gi|228308199|gb|ACLR01000118.1| GENE 69 63238 - 63780 718 180 aa, chain - ## HITS:1 COG:no KEGG:BT_3927 NR:ns ## KEGG: BT_3927 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 2 178 3 179 180 226 63.0 3e-58 MNTEQQYHKVVAECRTLFAQKLHDYGASWRILRPSSLTDQIMIKALRIRSLETKAEQRVD EDVDNEYIGIVNYGIIGLIQLERTPSDKPDLSPEEALELYDQLIEETYQLMVDKNHDYDE AWRKMRISSITDIILTKIFRTKEIEDLAGKTLVSEGIAANYQDMINYAIFALIKLRFDQA >gi|228308199|gb|ACLR01000118.1| GENE 70 63808 - 66273 3062 821 aa, chain - ## HITS:1 COG:BS_lonA KEGG:ns NR:ns ## COG: BS_lonA COG0466 # Protein_GI_number: 16079872 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Bacillus subtilis # 49 819 8 769 774 587 43.0 1e-167 MKEDNYDFVETALPNVGSGGMVIPLPNVIDEDEILDDEHDALKVLFHSTFPVLPVFNAVL FPCVLQAVMLTEDKQIDAVSNAMSKGQYIVATTYIGSDPDTPITPSSLAKVGVLCIVEDM IHPSPDNVVAIIRGVIRVHTSNYTQTNPYLRCRVESPRLLPNTENCLTNDTELFVAFNKL RYELVELVKIRHMEGAEDFVEALNAKNNLPFLINFTAAYLSLVYRAKLELLKIADTTELV MELISYVRQTSELVQINEKIAKQTQSDMDEMQRKHFLEQQIRTIREELGEGDFADQTIAE LREAATKKQWSEAVQKTFDRELGNLERIPTQAPEYSIQLQYLRLMIDLPWQEYSQDQFDL KHAEEILNRDHFGLERVKERILEHLAVIKLKNDLKSPILCLYGPPGVGKTSLGKSIAESL GRKYVRISLGGLHDEAEIRGHRRTYIGAMCGRIIDSIKKAGTSNPVFVLDEIDKISSDYK GDPAAALLEVLDPEQNVAFHDNYLDVDYDLSKVLFIATANTLSTISRPLLDRMELIQVSG YLLEEKVEIAHRHLVPKELEAHGLTSDQFAIDTDALTYLIEGYTRESGVRSLQKNLAALM RKQAKRVAMGQKYSVQITPEIIQQDLRTPPYTRDIWQDFGMPGIVTGLAWTEVGGEILFI ESSTHRGKEGKVTLTGNLGDVMKESAVIALDYIKAHCEELEIPESTFDKLEIHLHVPEGA IPKDGPSAGITMATSLVSTLTRRTVKPRIAMSGEITLTGRVLPVGGIKEKILAAKRAGVK TLILSKENEKDILDIKPIYIEGLTFSYVETIKEVLDLALND >gi|228308199|gb|ACLR01000118.1| GENE 71 66912 - 68318 1761 468 aa, chain - ## HITS:1 COG:L130687 KEGG:ns NR:ns ## COG: L130687 COG3579 # Protein_GI_number: 15673860 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Lactococcus lactis # 31 463 3 432 436 308 36.0 1e-83 MKKLLFPLLLLLSSVMLLAQSQSSNRSEGAITPKLLQKLQQATPKAPAERALHNSIVQNG MVLANAELATPPDDHFTYRVPTKGITDQKRSGRCWLFTGLNVLRAKFIKDNNLGEFYFSH CYSFFWDQLEKANLFLEGILETRTLPITDRKVEWLFQHPINDGGQFTGISDNLLKYGVVP SDVMPETYSSNNTSRLSSLIAKLLRQGGMELRAKAEQGATLADLRKVKETTLQAIYRLLC LNLGTPPTTFEYTLRDADGKVLSTKEYTPLSFYKEHIGLNLKDDYVMIMNDPSQPYYETY AIEYDRHAWDGKDWTYINLPMEEIKQMAIASLKDGSMMYYSCDVGKELNKESGLLTLGYD DYEAITGVPMTMTKGERIASFDSGSTHAMTLVAVDLDKSGKPTKWMVENSWGATSGHQGH LIMTDAWFDAYTFRLVVNKKYLTPRAKELQGKTPKLLPPWSPMFRAEE >gi|228308199|gb|ACLR01000118.1| GENE 72 68333 - 70669 2110 778 aa, chain - ## HITS:1 COG:no KEGG:PG1604 NR:ns ## KEGG: PG1604 # Name: not_defined # Def: immunoreactive 84 kDa antigen PG93 # Organism: P.gingivalis # Pathway: not_defined # 5 778 9 775 776 433 34.0 1e-119 MKASIHLLLLPLLLCTLPLTAQEPLWQWHLAVGDVELVADLPEQVLFTTEGVIGTVSPEH PNEIHLLDGLTPISDLDARMIRYSPSHKVTTVYYASGRIDLIYSDHIYNLVGISDNSNLN DKTATRIFYYKEYAFIAGHFGLMQIDLNNHQIVATAFLGKEVLDAFALDEKLYALTKEGL RSSTLSQNLQDPASWSLISGLPAKEMTSITALPDGSLWYIDSLKNLYRTTLTQASATPQM MAQSGWAQRLFPLADGVAVAGADSLLVWRSGGERIRIDLPARLQSLSGDSSADRLWFTAG GSLYKANLASASEGKVSLDKLSLEANAPKVNKHFYITFQHGRLYSVSGGRNYNAFWIPGH IQIYTPPRWDNWTYWQIVEQTNYIPVYDLVSIAVDPHDANHYFVGSWGEGLYEIQGRLIL NRYTPDNAPFVRAWDNDSPTAHNVRVGSLCYDPRGNLWMAQGQGLVANPLVVRTPDGTMK AISYPDIELVNAFGPMLALPNGVKWLLIYHRSADGNNGVFIFDDKGTPLDQSDDEYRLVS KFVDRTGKEIAAKRYYDLALDPSGSLWIATDKGPICVANPSSFISQSTPLASRPVGGQEP NLYYVLDNMPITAIAIDALGNKWCGTGSDGLYLLSSDGTKLLAHYTKDNSPLLTNDVLSL AIDKERGVLYIATSAGLVSLYIGQTSDWSAQSKEVYIYPNPLRPEDPDLITLTQLPAGTT VRILDGAGNLIYQEVAQTGELTITTRLPSGERYPSGIYHALLSDSEGKHSYSIPFAVI >gi|228308199|gb|ACLR01000118.1| GENE 73 70666 - 71055 213 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162456259|ref|YP_001618626.1| putative ribosomal protein [Sorangium cellulosum 'So ce 56'] # 4 124 77 200 207 86 42 5e-16 MIRGLFVEALGGDPGVHSARYAGRDGDDVANRKHLLDSLASHPEPWRAYFECVIVLIDSQ GEQHHFVGHVAGRIIDHEEGTEGFGYDSLFVPEDFDKTFAMMSPQEKNAISHRTRAVDQL RTYLTQHSL >gi|228308199|gb|ACLR01000118.1| GENE 74 71052 - 71258 224 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKVLYLATHNAHKLLEIQSMLGDTCEVRSASSLGHYTAPDESASTLLGNATIKAQAALRP LPQALHCR >gi|228308199|gb|ACLR01000118.1| GENE 75 71307 - 71708 353 133 aa, chain + ## HITS:1 COG:DR2400 KEGG:ns NR:ns ## COG: DR2400 COG2315 # Protein_GI_number: 15807390 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Deinococcus radiodurans # 1 107 5 116 132 63 33.0 7e-11 MNGISQIDELCRQLPYCEVDAPFGPEVVTYRLSRRIFALLWLEHDPGMVSLKVNPDLIEP LLGRHSDLQPAFHLNKKHWVQLELPTSESEEWIARLLRHSYAQVWRKLPKIQQRLLPLGI EIYNQAQNEQDLL >gi|228308199|gb|ACLR01000118.1| GENE 76 71689 - 72438 663 249 aa, chain + ## HITS:1 COG:BS_birA_2 KEGG:ns NR:ns ## COG: BS_birA_2 COG0340 # Protein_GI_number: 16079301 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Bacillus subtilis # 33 175 28 171 245 91 37.0 1e-18 MSKISFEITELGHPIESTYDYLVKLLQERPSLPSGTVIHTDYQTAGRGQLNNSWFSSPRL NALPSIYLRLDRPLQQIWSISEATALAVYKSYKEQLSSEDTIEIKWPNDIFVNGHKIAGI LIHNALAEGSVAETIIGIGMNINEEAFPPELPQAISLHLVTGQTYDVKAFLRQMLRHLGE QLARQDYAALHAEYNDLLYQRGIRARYCDVATEEPFEATIQEVSPQGQLVLTTTTGEERR YAFKEIVYL >gi|228308199|gb|ACLR01000118.1| GENE 77 72448 - 73236 584 262 aa, chain + ## HITS:1 COG:VC0803 KEGG:ns NR:ns ## COG: VC0803 COG0566 # Protein_GI_number: 15640821 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Vibrio cholerae # 12 260 15 252 257 137 35.0 2e-32 MSERTKIEHRPLTHAEVKLIKSLQLAKYRRQSNLFIAEGEKLIGEMLPAYRCQLLVGTAE LVEPLLERCPASIAEAVTLPDPKQIERVSGLKSPRPLLALCEIPTIEAPQALLQPTLLLD DVQDPGNVGTLLRTCDWMGIRQVLCTEGCADIYSPKVLQATMGALARVQVYRYTDRTALL TMLKKTEIPVIGTFIDGVPLRTLRLASEQPYILVLGNEGNGISPELSALVSQRITIPSPV DSHCESLNVAVAGAIVMAHLML >gi|228308199|gb|ACLR01000118.1| GENE 78 73242 - 74234 456 330 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145637283|ref|ZP_01792944.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae PittHH] # 1 287 1 284 326 180 34 3e-44 MQISTLDLGSRPLLLAPMEDVSDAPFRLLCKQFGASLVYTEFISADALVRYVPSTMRKMR IDPAERPVAIQIYGRDVETMCEAARIACQLEPDLLDLNFGCPVKRVAGKGAGSGMLREPE LLLEITAAVVAAANCPVTVKTRLGWDHNSLIITELAPRLQACGIAALTIHGRTRSDMYKG SADWTLIGEVRSNPEIQIPIIGNGDITTGEEVRHAFDTYGVDGVMVGRAAIGQPWIFGEM RAAVDPTFTAPKLSSQQQLEILKEIVHKNIEKLDERRGILHSRRHLAATPLFKGIPNFRA LRIAMLQAPTLADLDDVLAQVEPLLPQTEG >gi|228308199|gb|ACLR01000118.1| GENE 79 74237 - 74797 355 186 aa, chain - ## HITS:1 COG:BMEII1038 KEGG:ns NR:ns ## COG: BMEII1038 COG0742 # Protein_GI_number: 17989383 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Brucella melitensis # 1 168 35 200 221 90 35.0 2e-18 MRIIAGKYGRRRLSPPKGLTLRPTTDIAKEALFNSLSAQYDVEGMRVLDLFAGIGSISLE FVSRGAASVTSIEKHPKHAAFIRSAADTLDKEILSSKQLLVLNRSVEQYLRQYDGEPYDL IFADPPYNLPWIKDIPDLLFASKAWCPSSIFVLEHPDTVDFARSARFAWHKSYSAVQFTC FAPTEE >gi|228308199|gb|ACLR01000118.1| GENE 80 74811 - 75659 661 282 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470098|ref|ZP_04055007.1| ## NR: gi|228470098|ref|ZP_04055007.1| hypothetical protein PORUE0001_1032 [Porphyromonas uenonis 60-3] # 1 282 1 282 282 555 100.0 1e-156 MQQPPALPTDTLASAVPSLALRLTADGFVYLYGLSGEEKEAGAQESYHTKIQSQFVPVEW SRVSALWGDIIAQHPLLSDPEGAVRVLYPASHYVVIPSGMSGEQDVHWWRLTAPIFADEE QYYSNSYTLGDGKPSLAVGFSHLVKGFLQRSFVACQFIPTILPFAQRVLRQSSLQTGLSL GVELVEGGCDLVLCQSGNLLRANHYSWPRYRSWQHHLYQVLYFLSKVYLDSSVDHAAPVS IILSDGTAGADSLVGELLQALYRQFTTADWDVSVMPTDYWYA >gi|228308199|gb|ACLR01000118.1| GENE 81 75842 - 76483 692 213 aa, chain - ## HITS:1 COG:no KEGG:PG1302 NR:ns ## KEGG: PG1302 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 213 23 232 232 194 50.0 1e-48 MRKLMTVILLVAAVIVGYLAVMSILTPERFSQIRVAREAPIQARLKQIALVENAFHDVYN RYAPVDELRQFLTDGKLFYVRSEGDYTDAMREAGMNERQAAAKGLIVRDTVWLSARDSLL KGGMTPEEFLQVPGFPESIIEIDTASVAQEIGDDVVMVPVFRTAVPLSVYLADQDHRLLN AAIKEAEARYQGTGYPGLALGSLKEVKSTGNWE >gi|228308199|gb|ACLR01000118.1| GENE 82 77088 - 78134 401 348 aa, chain - ## HITS:1 COG:no KEGG:SRU_2576 NR:ns ## KEGG: SRU_2576 # Name: not_defined # Def: putative poly-gamma-glutamate biosynthesis enzyme # Organism: S.ruber # Pathway: not_defined # 12 315 49 328 352 94 30.0 8e-18 MSKQGTHWWGSPYTFSEKMDFLKYRILSPKEPSEVKAPEGMQPLVSDYTFRPEASEKGKE ISMIFTGDLMPFGDTKPSHTIALEQFLASADYIVFNLEGVVTDRRRFLALSHSHTPLYDY LHTSFGRGVILNVANNHASDFGRKAFSLQNQRLRDQGFLVIGDTPTPLTIEDQITLSART FLSNQPPIIETLSLTHPSISHEWRLLQHTYNIFMPHWGYEMHLSPTQEQIALYHSIVPAI YDSVIGNHAHTPQPVYLSESSVLATSLGNYCYLNHNPNHWMGSLLKCTFAIQESPNTKPV LSRVELRHTIQHITRSRLLLDLVDAIDYRSLRKATNFYRWNYLKDLLK >gi|228308199|gb|ACLR01000118.1| GENE 83 78150 - 78590 379 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470137|ref|ZP_04055046.1| ## NR: gi|228470137|ref|ZP_04055046.1| hypothetical protein PORUE0001_1035 [Porphyromonas uenonis 60-3] # 1 146 113 258 258 273 100.0 2e-72 MASRPASVFSPRRYKIVINNDPQFKGIPFDSIPYNAAVGIVGHELAHIVEYETKTLLGLL DCLLLYSDKSHGKAYFEKTTDLTTIQHGLGWQLYDWAKYAMYDNQIASEEYKAFKQRTYL SPDEIEQYIRHYAKYATPCLKTLQAE >gi|228308199|gb|ACLR01000118.1| GENE 84 79233 - 79646 618 137 aa, chain + ## HITS:1 COG:Z0895 KEGG:ns NR:ns ## COG: Z0895 COG2185 # Protein_GI_number: 15800444 # Func_class: I Lipid transport and metabolism # Function: Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) # Organism: Escherichia coli O157:H7 EDL933 # 1 124 22 145 170 161 61.0 4e-40 MNQKTIVTGVIGADAHAVGNKIIAYALNNAGYKVVNLGVMVSQEEYIEAALETKADAILV SSLYGHGEIDCQGLREKCDEAGLKGIPLLAGGNLVVGKQDFADVESRFMAMGFTKVYPPG TPIETTIAYLDSILADK >gi|228308199|gb|ACLR01000118.1| GENE 85 79648 - 81033 1640 461 aa, chain + ## HITS:1 COG:no KEGG:CTC02567 NR:ns ## KEGG: CTC02567 # Name: mutL # Def: glutamate mutase, MutL # Organism: C.tetani # Pathway: not_defined # 3 456 9 462 467 396 46.0 1e-108 MHYLTVDFGSTYTKLTLIDVANAEIVATASAFTTITTDVLEGFNNAWQKILAQHPDAHYD RLLSCSSAAGGLKMVALGLVPSLTSKAAKMAASSAGAKVVKTYAYEISHAEQEEIYEINP DLVLLCGGTDGGNKEVILANARRLAEIDRPFAIIAAGNKSASYDLEEIFAQCDKKCVVTE NVMPEFGQINILPARQCIMDLFISRIIDAKGLGEVQKRAELEIIPTPFAVLKACELLSKG IDEEHLGWGDLMAVDLGGATTDIYSMTDGAPSMDNVLIKGIPEPYSKRTVEGDLGMRYSL KALEDETDVKALARAYGVTPEAIVDWVERCAASPDTVAEPGSQEQVIEEALAYSAVDIAV ERHAGIISKVYTPIGEMFTLVGKDLTQVPRLIGIGGALINSSDPARILSGSRFNPQRYEY AKPQDPHFYLDKRYIIASMGLLSQVAPEVALTILQREVLPI >gi|228308199|gb|ACLR01000118.1| GENE 86 81088 - 82536 1782 482 aa, chain + ## HITS:1 COG:ECs0762 KEGG:ns NR:ns ## COG: ECs0762 COG4865 # Protein_GI_number: 15830016 # Func_class: E Amino acid transport and metabolism # Function: Glutamate mutase epsilon subunit # Organism: Escherichia coli O157:H7 # 1 482 1 481 481 619 60.0 1e-177 MELRNKRIDNDTFYKERKEVLASWPTGKDVNFEEAVEFQKSIPEEKIFGRKLAQADAEGR TLIQPRAGVALYTEHIRLLQFLEEEGGADLLPSTVDSYTRLNRYHEAENGIIKSKESGRS MLNGFPIVNYGTKICRTVTSALKNPVQVRHGTPDARLLTEISIAGGFTSYEGGGISYNIP YSKNFSLEKTIMYWQYTDRLVGMYEEAGVSINREPFGPLTGTLIPPCISSAVAVIETLLA AEQGVKDITVGYGQCGNVIQDVAAIRSLRELTNSYLKEYGYDDVRVTTVFHQWMGGFPQD EAKAFGVISWGSATAALAKATKVIVKTPHEAMGVPTKEANAAGLRATKQVISMLRDQSLV DIPVVEQESDIIVRETKCILDKVFELGKGDLAVGTVAAFEAGVLDIPFAPSRYNAGKVLP ARDDNGAVRILDTGHLPFTEDLKAFHREKLEERSRFEHRPVSFQMVIDDVYAIGKGFLVG RP >gi|228308199|gb|ACLR01000118.1| GENE 87 82621 - 83865 1578 414 aa, chain + ## HITS:1 COG:ECs0761 KEGG:ns NR:ns ## COG: ECs0761 COG3799 # Protein_GI_number: 15830015 # Func_class: E Amino acid transport and metabolism # Function: Methylaspartate ammonia-lyase # Organism: Escherichia coli O157:H7 # 1 409 1 408 413 464 53.0 1e-130 MKIKKVVCAPGKTGFFFDDQKAIKKGAKNDGAFYSGDPVTPGFTSVRQAGESISVLFILE DGSIAHGDCAAVQYSGAGGRDPLFLAENFIPVIMKEIAPLYEGKEITTFRQMADLVDKHV NADGKKYHTAIRYGVTQACLDAVAKSQHKLMAQVVADEYGTKISDTMVPIFSQSGDDRYL NVDKMIMKEVGVLPHALFNNVETKVGLKGEKIKEYLQWLRDRIVTKRQNPNYQPAIHIDV YGTLSIVFNNDFQRIADYLHELSEIVAPFELRVEGPVDMDAREPQIEALAKIRELLDAKG SKCQIVADEWCNTLEDIIAFSERKAGHMVQIKTPDLGGVNNAIEAVLYCKQHNMRAYLGG TCNETNRSAEVCANIAMATSPCQCLAKPGMGVDEGYMIIFNEMSRVLALKDVLK >gi|228308199|gb|ACLR01000118.1| GENE 88 83998 - 85386 1852 462 aa, chain + ## HITS:1 COG:no KEGG:Hore_15420 NR:ns ## KEGG: Hore_15420 # Name: not_defined # Def: hypothetical protein # Organism: H.orenii # Pathway: not_defined # 6 454 2 449 461 561 59.0 1e-158 MTPITDEIRVLSTTAILGYGFPEASFREGMKRKPHVIAADAGSTDPGPYYLGAGVSFTDR NSVKRDLEIMIQAGVENKVPVVVGSAGGSGANAHVDWVLEIVREIIADKKLSLRLAVIRS EFDKETILREFDEGHITPLAPAPEATKKDIEESVRIVAQMGEEPFVEALKGGADVIIAGR SYDPSVFACLPIKEGFDRALALHMGKILECAAICALPGSGSDCMFGYLRKDHFVLEPLSK DRKCTTLSVAGHTLYEKTDPYHLPGPGGALNLHGCHFEQIDDNKVKISGTVFEPTDGYFL KLEGTRLVGYRTISVAATTDPIMISKIDSIIESVKARVKDNFDNYGIKDYYLDFKIYGKN GVMSMFEGIDGHIGSELMVVIEAVAKTQKEADTICSFARSTMLHFGYEGRIATAGNLAFP FSPSDCHMGEVYEFSLYHLLQVKDPKQYFPVEYVEYADGQRK >gi|228308199|gb|ACLR01000118.1| GENE 89 85411 - 85731 464 106 aa, chain + ## HITS:1 COG:no KEGG:CHY_0584 NR:ns ## KEGG: CHY_0584 # Name: not_defined # Def: hypothetical protein # Organism: C.hydrogenoformans # Pathway: not_defined # 5 105 3 103 104 130 62.0 2e-29 MTQHKLMDIASVIRSKNSGPYEITFDIIFKDFDIYNQVKAAKAITEQTFCDLYHIKPDHI VKIVYFDPAKAIKCTIVRPIPSGNLGERDVYGAQQHAPLMGLSIQY >gi|228308199|gb|ACLR01000118.1| GENE 90 85774 - 85983 117 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWKKLSFHQYGGEVVPFGQAYLRQLRAALHLVLTSPSVQQQLAPTRLYDESVWGLTLYLG AIKSLFRDC >gi|228308199|gb|ACLR01000118.1| GENE 91 86039 - 87085 1084 348 aa, chain + ## HITS:1 COG:SP0259 KEGG:ns NR:ns ## COG: SP0259 COG2255 # Protein_GI_number: 15900193 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Streptococcus pneumoniae TIGR4 # 24 338 17 331 332 380 60.0 1e-105 MKGDPFDIREERTPPQSLSDLQQEEQLRPSYFDSFRGQGHVVDNLKVFVEAARRRDEALD HVLLYGPPGLGKTTLSHIISHELGVGMKITSGPVLEKAGDLAGLLTSLEPRDVLFIDEIH RLSHTVEEYLYSAMEDFRIDLMIDKGPGARSIQIDLNPFTLVGATTRSGLLTAPLRDRFG INLHLEYYDVDTLTDIVLRSARILEVPCEEEAARGIALRSRGTPRIANALLKRVRDFAQV KGNGVIDSNITTVALEALHIDKHGLDHTDHKLLKTIIDKFDGGPVGLSTIATAMGEDPGT IEEVYEPFLIQEGFIQRTRTGRQATRLAYAHLGRTYRQDLPPEVSLFD >gi|228308199|gb|ACLR01000118.1| GENE 92 87110 - 88609 1336 499 aa, chain + ## HITS:1 COG:all1774 KEGG:ns NR:ns ## COG: all1774 COG1570 # Protein_GI_number: 17229266 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Nostoc sp. PCC 7120 # 35 498 35 410 412 134 29.0 6e-31 MSSLEMQASELVAKRYTLTELLGSLQRCIDHYYNRLYYVTGEVSGYRGRSQRGHCYFNLI DKVSDPLHPEAGGGELSAQISAVIWASRYNQIAQHFQQVTGQPLTDGIKILALVELKYDP RYGLQLDIQDIDPSYTLGEVARQRRETLQLLERMGLMERNKQHPMPRPLRRIAIISSPTA AGYQDFTRHLEESAVAPFIEKALFRATMQGKSAPQSIVAALERVRQHETLFDLVVIIRGG GATADLGTFDDFGVARAVAEFSLPVWSGIGHDRDESVVDLVSHRAFKTPTAVATAVIDAW CAEYTLLEEAHQRLERSWLEARQTAQTGLERLAQLLRQTTLEQLHREERQMLLLREQLSV SPRTLLHNQHTLLESQRERLAGAARYLPKSYRHEWDTLLSLFRHRYASYLTAQLNEWQAR QQSLQEKRKITTTQRTQIEHLAQIIRAMDPQTVLQRGYAIVHHKGDLVKSPSQLREGDDI ELRLAEGTLSATLSQLKEP >gi|228308199|gb|ACLR01000118.1| GENE 93 88627 - 90108 1542 493 aa, chain + ## HITS:1 COG:BH1015_1 KEGG:ns NR:ns ## COG: BH1015_1 COG0737 # Protein_GI_number: 15613578 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Bacillus halodurans # 29 492 35 505 707 186 31.0 6e-47 MRKTFNYTLYGALLLLLVGSLSACRVKQQAQPSGVSTLAVVGLNDIHANIDQLPRIAFMV DSMRAIYPNLLLLAAGDLQTGNPINDNFQPKGLPIIELMNEMHFDASALGNHEFDLGQHG LGDISHRAKFPFLSANVFPSPSYGIALKPYKIFTMPDGTRVSVVGLLQLGELGIPDSHPK NVRGVAFTQPLEEIKNYRYLAGCSDLQIAVTHIGVQEDTILARVAPYLDLIVGGHSHTLI DHPNNLHSSVPIVQSGYKAHYISLALIRHRGGQVLSHQEMLLPADPHAGGVNEKMQRMVE GYNANPLFAEVVTTNPHPIQDKYTLGAIFADAQRWYSHADFAMQNPGGVRIGELPQGNIT LKDILRLDPFGNELTVLTMTGRQLKEFFLRAWTTDSNTPAHTSGLRVDYQLDDTGVLLDC TVYPAGSDTPIDPDKLYTLATSSYVQAAYTYHTSAPDKNQGITTAEVIVQYLKSLPEMPQ VDYKSRYNIRVTR >gi|228308199|gb|ACLR01000118.1| GENE 94 90230 - 90487 385 85 aa, chain - ## HITS:1 COG:no KEGG:A2cp1_3387 NR:ns ## KEGG: A2cp1_3387 # Name: not_defined # Def: hypothetical protein # Organism: A.dehalogenans_2CP-1 # Pathway: not_defined # 9 84 11 86 178 73 48.0 3e-12 MTDTTPLLITPETKVGAMLDRYPELIDTLVSLSDRYRNLTNPILRKTVAPRTPLKLAAQM GGVDLALLVNTLRQAVGQPPLDLPK >gi|228308199|gb|ACLR01000118.1| GENE 95 90480 - 91718 1217 412 aa, chain - ## HITS:1 COG:CAC1531 KEGG:ns NR:ns ## COG: CAC1531 COG2461 # Protein_GI_number: 15894809 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 7 409 6 404 405 282 38.0 8e-76 MSEFLHNTPDERKAMLKEILLRLHQGEQPEALKRQLSTLLHAIPYQEVVAVEEELIAQGL LSTDEIQLFCDHHSEILEGAIDVSGAKEVPAGHPIDTFRAENVALGEVVSEYYALAKEVK EEHCERPLSELLLSLRSIFNRLMDVDKHYLRKEYLLFPYLEQHGVTGPPVVMWGKHDEIR KLLKSAIAVLSGETSDMASLKAHIVETFDPAVEMLDSMITKEEMILFPMTLDLLSEAEWY HIYQETPEFGYCLYDPQTVWKPDVEADNLHFQYESHDAIRLSTGAFSVAELEALLIHLPI DITFVDKDDKVRFYSHSPKRVFARNRSIIGRDVRMCHPPESVHVVETILADFKSGRQSCA KFWIGNFRGRFIYIEYTAVRDPEGNYLGVVECSQDITELRQLEGSRTLLNYD >gi|228308199|gb|ACLR01000118.1| GENE 96 92209 - 92577 99 122 aa, chain + ## HITS:1 COG:BMEII0787 KEGG:ns NR:ns ## COG: BMEII0787 COG3189 # Protein_GI_number: 17989132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Brucella melitensis # 1 116 1 113 116 117 53.0 7e-27 MNELRYKRIYETPVEADGFRVLVDKLWPRGMKKENAKIDLWAKEIAPSDELRRWFSHTPE RYDEFKQRYRQELSENSASQEFKDLCVQKLHDHNVTLLYGAKNEKYNHAVVLKEWLAEQM HP >gi|228308199|gb|ACLR01000118.1| GENE 97 92679 - 93233 787 184 aa, chain + ## HITS:1 COG:no KEGG:PGN_1038 NR:ns ## KEGG: PGN_1038 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: Arginine and proline metabolism [PATH:pgn00330]; Metabolic pathways [PATH:pgn01100] # 3 181 2 180 180 318 85.0 7e-86 MSNKYYGNLIPNTFFTTKGSGESDLEKHAGSYHMALYDAGIADYNIMVYSSVLPATARLV SPDEVDMPPFGSELKTIMSVSHGIQDEFVSAGVVYAWMYKDENFDEKAGGLVCEVSGRYR IEELESRLIRVINDLHQNTYSQYYLGELNFITEGITVTKRYGTALAGLCFVDFVLPESPM KDED >gi|228308199|gb|ACLR01000118.1| GENE 98 93261 - 93698 631 145 aa, chain + ## HITS:1 COG:TM1080 KEGG:ns NR:ns ## COG: TM1080 COG0698 # Protein_GI_number: 15643838 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Thermotoga maritima # 1 140 1 140 143 144 48.0 5e-35 MKLGVCSDHAGYQLKEQVKEWLAAMQIECVDYGTHSEERCDYPDYAHQLAFAIQMGTVDR GIAICGTGNGMAMTLNKYNVIRAGLAWNEDIAKLIRAHNDANVLVMPARFIETAEAERCL HAFLDTPFEGGRHKERIDKMVLPTC >gi|228308199|gb|ACLR01000118.1| GENE 99 93718 - 94209 494 163 aa, chain + ## HITS:1 COG:no KEGG:BF0726 NR:ns ## KEGG: BF0726 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 80 157 48 125 140 62 42.0 4e-09 MEALEIFFLSIAIGLIVHLLVRWSERQKARKKDGTTTQQGSQTTGETALGSALGEVEREL RESLSGESDTSRCADDATACASCTDSCSEAERAVRRAPQIVYYDDEELDVLAHRPVESYT DAELAMLREVAETLLETDYEGWLKSLSMRGILLPPEILQLVTP >gi|228308199|gb|ACLR01000118.1| GENE 100 94307 - 97756 3444 1149 aa, chain + ## HITS:1 COG:NMA0905 KEGG:ns NR:ns ## COG: NMA0905 COG3468 # Protein_GI_number: 15793871 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Type V secretory pathway, adhesin AidA # Organism: Neisseria meningitidis Z2491 # 983 1149 973 1137 1773 63 29.0 3e-09 MADRDTSYRGKLPLRTKHCLGVVVALLCVLGSAVGCSTKRNDSASRFYHNLTTRYNVYHN GQLAFNEGYKALYHDLSESYTELLVPDPITRTAGQESSEETAVGGSLGKAIEKGQKAIRE HSIRTKPKVSREDLLRNPKKKAFYNKMEYNPFLHNAWMMVGESQFYGGHFMEALATFSYM TRLYSTEDKVRDEARIWQARCYLALGWVDEANEILSNLPEDGIYKSRSKAYPLAETELAL KQGDTLSAISYLQQTIDRKPIKAQRARLYYLLGQLYSNEGRWGEASRAFGRVIRLAPPYP LEFAATMRRLEIEAQGNPQRVIQRLERLAHRDKNKELVDQIYLTQGRLYLAMPDTTHAVT AFTHGVAQSTQRSFDYMLCQLHLGDIYLAQNNYLKAQEAYAGAAGVIEKSHPRYEAVTKL SADLDQLVSFAQQVYEQDSLRRIAALPEAEQLAYADSLITAYKKAQEETRKQELLAQQQG QNEALNQQADINMPSRGRPGGVGTPPPMAGGGNGKSYFYNPTLVAQGKDLFERKWGKRPL ADDWRRRNKQIAIDAGDPAAQMGERGEQPADSLSSVASPTDSLTSSTDSLPADQDPLQRA YYLSKLPTTPEQIAASDEIIQTALVGMGKAFNEQMERFEESVKSYEDLLRRYPEYADRAS IYYTLYMLYQRLERADLAEPWRRKLLAELPEDPLAVTLQDPNYIAKLRANIGADERLYDQ AFNAYLAGRSREVQQLYRETAESYPLSETLPQFAFVNALSYVLQGDEASFRKGLESLTAS YPKEEVSVLAQEMLQRLLRGVHIAQGGYQGMAWDLRIASQDSIAGTLAEQPFTIGKRSDK YQALLILPRKGDALERSLRFAVESFNYAQFTDYILPVAFAPSEHETLMTISDLPTATVAW QYVTRTYSPEGYLSALDSSALLLVMTEDNYRQVATGAKSIGDYMTFVADSLVELYPAAHY LLDRWLLLTGSQAEKPVKTDTVPSPALPAVNKPITFEIDRSQIALPAVELQLDSLLQKPE ETKPVENQRTTIQKARQVTPEDLKQMERERKAQERQAKREREEQLKERQRQRDAELKARR EEQRRQEQLRQEQIKRVEAERRAQEKARKEQLRQQEQERQKRLKALEEERRRKLKEREAQ QKEQQKQRR >gi|228308199|gb|ACLR01000118.1| GENE 101 97757 - 98485 459 242 aa, chain - ## HITS:1 COG:MT3031 KEGG:ns NR:ns ## COG: MT3031 COG0463 # Protein_GI_number: 15842506 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mycobacterium tuberculosis CDC1551 # 5 181 4 180 256 107 36.0 2e-23 MTTTPLLTIITICYNAEATIAPTLHSLAEQRDQSFEYLVIDGASQDKTLSLVQTLYPRAI VHSEPDHGLYDAMNKGLRQAHGTYIWYLNAGDTLRTSDTVRTVCAALETHQPDLLYGDTM IVDGAYQDLHPRRLRPPHQLTQRSFANGMLICHQAFIPRRSLAPLYDLRYRYSADYDWCI KIINAIHSQYRIDDYLVNYLNEGVTTRNHRASLLERLRIMARRYGWFTALTRHVSFLFCR QR >gi|228308199|gb|ACLR01000118.1| GENE 102 98482 - 99735 991 417 aa, chain - ## HITS:1 COG:all4426 KEGG:ns NR:ns ## COG: all4426 COG0438 # Protein_GI_number: 17231918 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 107 411 100 415 417 94 27.0 5e-19 MTRVLHLSTYGANSGAGVAALRLLEAERSYGLDAELLLMAPSSEPLTGVHALGNDRRLYR AWQCKLWSERALVALLNGFNREQVFKTSLGRLGISMSALRPYLAKVDLIHLHWTQHAFLS LRTLEELCKLGLPVVITLHDYWWAQGIEQMATKPGELSPPLRLLDRQVRQRKAELMAHYP IHWVTVSSSLTNEVSRSPIVPRLGISTIGNVLSAQYYQQAQMQETKASNEQAPYQILFVA TRVDDPIKGWSYLTAAMQQLAELAGELRAQMQLTLVGALSDRTLLKQIPIPVQHLGSISD AERLRSLYTESSVLISTSERESFGQTLLEALACGTPVIARDSGGPADILINGVNGALVAH DKPQEMATALWQHFTEATAYQSEACRASALRFTPTAIAQQYAQLYAQLIDDTQRANR >gi|228308199|gb|ACLR01000118.1| GENE 103 99738 - 100781 1266 347 aa, chain - ## HITS:1 COG:CAC1550 KEGG:ns NR:ns ## COG: CAC1550 COG0229 # Protein_GI_number: 15894828 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Clostridium acetobutylicum # 210 347 6 143 146 208 65.0 1e-53 MTLSSRTKWVALALIISCTTIILTNAMSRETAQLQELDTVYLAGGCFWGMQAFFEEVDGV VSTEVGYANGTLGRQPSYEEVCTGETGFAETLQVVYDAGRVPLSFILERYFTVINPTTLN RQGADQGTQYRTGIYYTKEEQRPIIEKALTSLQQAYADPIVVECKLLDNYYPAEQYHQEY LRKNPGGYCHIGRTQIARESYVRYVDHEALRKRLTPMQYHVTQEAGTEPPFDNEYYDLTE AGIYVDVVSGKPLFLSLDKFDSGCGWPAFAKPIDDQLIKESTDRSHGMVRTEVRSKDSNA HLGHLFEDGPAELGGLRYCINSAALRFIPLDSLEAEGYGDYLRYFKK >gi|228308199|gb|ACLR01000118.1| GENE 104 100708 - 101028 360 106 aa, chain - ## HITS:1 COG:no KEGG:PG0652 NR:ns ## KEGG: PG0652 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 100 1 100 100 94 50.0 9e-19 MIRHCVIFTLQLPGSAEEQLAHLKQIENLLENLPEQILELESMEVFFNCNPSEESTFMLQ ADVEDLEALSAYATHPAHVQIVNDLIKPYKVGRTCIDYKLHDHYPH >gi|228308199|gb|ACLR01000118.1| GENE 105 101059 - 102348 1634 429 aa, chain - ## HITS:1 COG:PA4960_2 KEGG:ns NR:ns ## COG: PA4960_2 COG0560 # Protein_GI_number: 15600153 # Func_class: E Amino acid transport and metabolism # Function: Phosphoserine phosphatase # Organism: Pseudomonas aeruginosa # 195 406 1 212 217 265 66.0 2e-70 MNTPTLNERGKLMLATIQGYDRPGVTASLMGVLAEHGAYILDIGQSDIHSHLNLGILFQM NEDDSGSVLKDLLFKGYELNVQIRFTPISTNEYGEWVNAQGKNRYIITVVARKMTAGMLS AVAGAAAEQGLNIDNIRRLTGRIPLDQTQQAPMASIEFSMRGNIKDVHTFQLDLLQMSGE LDMDISFQRESMFRRMRRLICFDMDSTLIQTEVIDELAMRAGVGDQVKAITERAMRGEID FIESFTERVALLKGLDVSVMEDIAHNLPITEGCERLMRTLKVMGYKTAILSGGFTYFGHY LQKKFDIDYVYANELEVADGKLTGRYVGDVVDGRRKADLLRLIAQVERVDLLQTVAVGDG ANDLPMLSLAGLGIAFHAKPKVKASAEQRISSVGLDGILYFLGYKDSLFDEQMIECMKDG TCSTLFPHH >gi|228308199|gb|ACLR01000118.1| GENE 106 102647 - 103945 1570 432 aa, chain - ## HITS:1 COG:no KEGG:BVU_2751 NR:ns ## KEGG: BVU_2751 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 205 429 394 626 630 147 37.0 1e-33 MKQITQLLAVAALLLLTACNPMEPIYKQLDSVDHPIQKSIVYALTDADYKTIATTFAKDE VAGYTGSSKEEFAKEVQREANYVKTNRTLTAWVSPDKYVPALIAKMYPEWGKGFAVTVSY AMQQDATLDKLISVKVSADDATKAGLTAKDPNKLSKDEITKLGKYLATTYADKGASYLAK VALAEGKRNMLFIGERLADSHTYRVISPAEYQAMGSTHDNFSSSMLPERYIPQLLQQSMP YAQPGNQLIVVYEWFENKFTTPEYQSFKLEGNQWRMAQTTSQFVNLGKQWVFDPTIRFTL TADDFMTLHAWVKANKPDYISEKHSSDSEWWFCGNAKYKNFTLTGGTSVGPRPDEEGKSA EELTKLRLERIKEGLKLILKARYADKPAQTNGIDQMYIITTVLRQTSNSTVTFTYKGLGG GNFEYVSGPNAI >gi|228308199|gb|ACLR01000118.1| GENE 107 103966 - 106575 3674 869 aa, chain - ## HITS:1 COG:no KEGG:BVU_2750 NR:ns ## KEGG: BVU_2750 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 13 869 14 865 865 933 55.0 0 MNRLLLITTALALLLASSFSSLAQVQVTGKILEKGSDEPMPSVTVYTDGGTSGTYSELDG SFKLSVSAGSQLTLSFVGYETTQLRVPASAQGHYDFGKVYMETNAIGLDEVRVIASVVPK DRLTPVPVSNVTMKAIQTQAPNIEFPELLKATPSVYVTKGGGGFGDSRINLRGFDSNNIG VLINGVPINDMESGKVYWSNWAGLNDVSSFIQVQRGLGASKLGLSSVGGTINMVTKSTDA KKGGSIYTGVGNDGFLKTSFNVSTGLMDNGWAISLAGSRSQGDGYVRGTNFVGWSYFVNV SKRINDHHRLSFTAFGAPQWHNQRGQMYLIEDYHNAAEGRRLNRSYGYMNGQIEGGAYGR NYYHKPQISLNHYWDINKESSIYTSIYASISNGGGRRIRGAKTDWLALDYNTGRPKDPAA FMGTPDGLLDYARVMEANRASNNGSQLIFSNAVNSHNWYGLLSYYTNKFSDLFKLTAGFD GRFYQGIHREVIDNLLGGDYYIEPQNSSTKLMYHKPYQPLKVGDKVQFDNIGEVLWNGLF AQGEFTGENFNAFISGAISHKGYRYVNLGGTGEKYDALTPPDKIVSPWATYLPWSVKAGA SYKFLEHSNVFLNAGYFTIAPYFRNVFFRYNTTINTGAKYERVFTGEVGYGFKMRNLRID INGYYTKWLDKSLTRNLGNNTTANISGLDARHAGVELEATYTPIKPLDIRFMFSWGDWIW SDDVKADVFDDAQQYLGTINAFVKGVHVGNSAQMTSALGISWEALKDFRLKADLNYAGKN YADFDPTNRTKETDKVDAWRLPDYVTLDLGANYRFNIGSCNATVYVNVNNVTNTEYISDA RDGKNHDMQSALVYYGFGTNWATGLRINF >gi|228308199|gb|ACLR01000118.1| GENE 108 106938 - 107135 327 65 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470087|ref|ZP_04054996.1| ribosomal protein S21 [Porphyromonas uenonis 60-3] # 1 65 1 65 65 130 100 3e-29 MIIVPIKEGENIERALKRYKRKYNDTGIVRRLRKLQAFQKPSDVKRRMMEKACYVQSLRQ EELDA >gi|228308199|gb|ACLR01000118.1| GENE 109 107581 - 108000 407 139 aa, chain - ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 8 73 145 209 227 59 47.0 2e-09 TDYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALYN TARPHRALNKKTPMQMLIPDYPNPLTTQPPKNQISKNDSPTAPSLKTPSPCRPTPNKELS LCTSAVKTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 09:27:30 2011 Seq name: gi|228308193|gb|ACLR01000119.1| Porphyromonas uenonis 60-3 deg1118640599555, whole genome shotgun sequence Length of sequence - 513 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 512 292 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308193|gb|ACLR01000119.1| GENE 1 2 - 512 292 170 aa, chain - ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 7 121 100 209 227 75 40.0 5e-14 FDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTDYEASLGIVTS VTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALYNTARPHRALNKKT PMQMRIPDYPNPLTTQPSKKQTSKNNSPTAPSLKNSESMPPNSQTKRAIF Prediction of potential genes in microbial genomes Time: Fri May 27 09:27:56 2011 Seq name: gi|228308117|gb|ACLR01000120.1| Porphyromonas uenonis 60-3 ctg1118640599500, whole genome shotgun sequence Length of sequence - 91318 bp Number of predicted genes - 77, with homology - 71 Number of transcription units - 32, operones - 16 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 372 398 ## gi|228469589|ref|ZP_04054581.1| transposase Orf2 2 2 Tu 1 . + CDS 906 - 2894 2637 ## PGN_0935 hypothetical protein + Term 2909 - 2960 0.7 3 3 Op 1 . + CDS 3078 - 4193 1159 ## COG1559 Predicted periplasmic solute-binding protein 4 3 Op 2 . + CDS 4206 - 4958 850 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 5 3 Op 3 . + CDS 4973 - 5662 345 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 6 3 Op 4 . + CDS 5659 - 6387 542 ## PGN_0421 hypothetical protein 7 4 Op 1 . - CDS 6397 - 7101 871 ## PGN_0524 hypothetical protein 8 4 Op 2 . - CDS 7134 - 7970 479 ## PGN_0525 probable aerotolerance-related exported protein BatE - TRNA 8071 - 8146 75.0 # Gly TCC 0 0 + Prom 7974 - 8033 4.5 9 5 Tu 1 . + CDS 8120 - 8356 144 ## + Term 8447 - 8491 -0.9 - TRNA 8195 - 8277 60.8 # Tyr GTA 0 0 10 6 Tu 1 . - CDS 8465 - 8947 628 ## COG1528 Ferritin-like protein + TRNA 9212 - 9288 82.1 # Arg TCT 0 0 + Prom 9213 - 9272 79.3 11 7 Tu 1 . + CDS 9388 - 10788 1139 ## BF2484 tyrosine type site-specific recombinase + Term 10794 - 10842 5.2 - Term 10785 - 10826 1.6 12 8 Op 1 . - CDS 10849 - 11451 625 ## gi|228470188|ref|ZP_04055095.1| hypothetical protein PORUE0001_0064 13 8 Op 2 . - CDS 11509 - 11832 320 ## gi|228470228|ref|ZP_04055135.1| hypothetical protein PORUE0001_0065 - Prom 11989 - 12048 3.3 14 9 Tu 1 . + CDS 12022 - 13269 1017 ## gi|228470234|ref|ZP_04055141.1| hypothetical protein PORUE0001_0066 + Term 13464 - 13511 7.1 15 10 Tu 1 . - CDS 13361 - 13537 58 ## + Prom 13434 - 13493 2.9 16 11 Op 1 . + CDS 13671 - 14732 1275 ## COG1087 UDP-glucose 4-epimerase 17 11 Op 2 . + CDS 14767 - 15147 665 ## COG0509 Glycine cleavage system H protein (lipoate-binding) 18 11 Op 3 . + CDS 15160 - 15669 755 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase + Term 15682 - 15736 4.5 + Prom 15681 - 15740 2.8 19 12 Op 1 . + CDS 15760 - 17478 1466 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 20 12 Op 2 . + CDS 17499 - 17933 472 ## COG0756 dUTPase 21 12 Op 3 . + CDS 17930 - 19693 1701 ## PGN_0995 TPR domain protein 22 12 Op 4 . + CDS 19710 - 20531 638 ## gi|228470187|ref|ZP_04055094.1| hypothetical protein PORUE0001_0073 23 12 Op 5 . + CDS 20557 - 21858 1643 ## COG4942 Membrane-bound metallopeptidase 24 12 Op 6 . + CDS 21868 - 22842 326 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 + Term 22868 - 22911 12.2 + Prom 23004 - 23063 3.5 25 13 Op 1 . + CDS 23139 - 24074 717 ## gi|228470218|ref|ZP_04055125.1| hypothetical protein PORUE0001_0076 26 13 Op 2 . + CDS 24131 - 24853 785 ## COG0670 Integral membrane protein, interacts with FtsH 27 13 Op 3 . + CDS 24872 - 25873 1053 ## PG0602 hypothetical protein 28 13 Op 4 2/0.000 + CDS 25863 - 26549 178 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 29 13 Op 5 . + CDS 26556 - 27476 318 ## PROTEIN SUPPORTED gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 30 13 Op 6 . + CDS 27489 - 28532 1230 ## gi|228470173|ref|ZP_04055080.1| hypothetical protein PORUE0001_0081 31 13 Op 7 . + CDS 28525 - 30078 1499 ## COG0606 Predicted ATPase with chaperone activity 32 13 Op 8 . + CDS 30140 - 31321 1492 ## PGN_0023 hypothetical protein 33 13 Op 9 . + CDS 31334 - 31810 419 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase + Term 31857 - 31903 7.3 + Prom 32140 - 32199 2.5 34 14 Op 1 . + CDS 32377 - 33297 1163 ## COG0668 Small-conductance mechanosensitive channel 35 14 Op 2 . + CDS 33360 - 35849 2594 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 36 14 Op 3 . + CDS 35917 - 36642 892 ## COG0217 Uncharacterized conserved protein + Prom 36646 - 36705 1.7 37 15 Tu 1 . + CDS 36743 - 38530 2188 ## COG0481 Membrane GTPase LepA 38 16 Tu 1 . + CDS 38634 - 40226 1931 ## COG0305 Replicative DNA helicase + Term 40295 - 40340 6.2 + Prom 40347 - 40406 2.9 39 17 Tu 1 . + CDS 40438 - 40602 60 ## + Prom 40733 - 40792 3.0 40 18 Op 1 26/0.000 + CDS 40816 - 41928 1435 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 41 18 Op 2 . + CDS 41964 - 43337 1265 ## COG0773 UDP-N-acetylmuramate-alanine ligase 42 18 Op 3 . + CDS 43348 - 44127 662 ## PG0582 cell division protein FtsQ, putative 43 18 Op 4 35/0.000 + CDS 44161 - 45624 1538 ## COG0849 Actin-like ATPase involved in cell division 44 18 Op 5 . + CDS 45676 - 47097 1528 ## COG0206 Cell division GTPase 45 18 Op 6 . + CDS 47113 - 47865 360 ## COG0775 Nucleoside phosphorylase 46 18 Op 7 . + CDS 47931 - 49097 1309 ## Cpin_3942 hypothetical protein + Term 49153 - 49199 14.1 47 19 Tu 1 . + CDS 49214 - 51238 2270 ## PRU_2506 outer membrane receptor (OMR) family transporter + Term 51282 - 51321 8.2 + Prom 51572 - 51631 4.9 48 20 Op 1 . + CDS 51719 - 52975 1261 ## COG0534 Na+-driven multidrug efflux pump 49 20 Op 2 . + CDS 52983 - 53900 1585 ## PROTEIN SUPPORTED gi|228470191|ref|ZP_04055098.1| ribosomal protein L11 methyltransferase 50 21 Op 1 . + CDS 54021 - 55994 2200 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 51 21 Op 2 . + CDS 56004 - 56849 1066 ## Dshi_3292 hypothetical protein 52 21 Op 3 26/0.000 + CDS 56873 - 57889 1130 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 53 21 Op 4 . + CDS 57911 - 59020 648 ## COG0438 Glycosyltransferase 54 21 Op 5 . + CDS 59076 - 61076 1803 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 55 22 Tu 1 . + CDS 61453 - 61665 157 ## + Term 61743 - 61785 4.3 56 23 Op 1 . + CDS 62193 - 64775 3626 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 57 23 Op 2 . + CDS 64840 - 66042 1904 ## PG1385 TPR domain-containing protein + Term 66087 - 66130 8.3 + Prom 66051 - 66110 2.0 58 24 Op 1 . + CDS 66206 - 67477 962 ## PGN_0144 hypothetical protein 59 24 Op 2 . + CDS 67495 - 69006 1781 ## PG1720 hypothetical protein + Term 69046 - 69087 1.7 - Term 69025 - 69082 13.1 60 25 Op 1 . - CDS 69102 - 69404 325 ## PGN_1429 hypothetical protein 61 25 Op 2 27/0.000 - CDS 69408 - 72530 3477 ## COG0841 Cation/multidrug efflux pump 62 25 Op 3 13/0.000 - CDS 72564 - 73616 1038 ## COG0845 Membrane-fusion protein 63 25 Op 4 . - CDS 73652 - 75175 1929 ## COG1538 Outer membrane protein - Prom 75242 - 75301 2.3 - Term 75177 - 75217 -0.3 64 26 Op 1 . - CDS 75309 - 75767 385 ## gi|228470230|ref|ZP_04055137.1| putative ferric uptake regulation protein 65 26 Op 2 . - CDS 75782 - 77071 1569 ## COG0192 S-adenosylmethionine synthetase - Prom 77259 - 77318 2.1 - Term 77891 - 77928 1.3 66 27 Tu 1 . - CDS 77947 - 79617 2056 ## COG2759 Formyltetrahydrofolate synthetase - TRNA 79707 - 79779 89.8 # Thr CGT 0 0 67 28 Op 1 12/0.000 + CDS 80440 - 82839 3183 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 68 28 Op 2 . + CDS 82869 - 83339 487 ## COG0602 Organic radical activating enzymes + Term 83465 - 83514 2.0 + Prom 83395 - 83454 2.1 69 29 Tu 1 . + CDS 83549 - 83743 160 ## - Term 83539 - 83580 -1.0 70 30 Tu 1 . - CDS 83610 - 83924 66 ## - Prom 84052 - 84111 3.7 + Prom 83812 - 83871 3.0 71 31 Tu 1 . + CDS 83944 - 84537 993 ## PROTEIN SUPPORTED gi|228470184|ref|ZP_04055091.1| ribosomal protein S16 + Term 84612 - 84662 14.7 72 32 Op 1 1/0.000 + CDS 84696 - 85940 1367 ## COG0612 Predicted Zn-dependent peptidases + Prom 85992 - 86051 1.8 73 32 Op 2 . + CDS 86072 - 86821 775 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 74 32 Op 3 . + CDS 86802 - 87311 428 ## COG0394 Protein-tyrosine-phosphatase 75 32 Op 4 . + CDS 87381 - 89141 1256 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase 76 32 Op 5 . + CDS 89138 - 90805 1298 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase 77 32 Op 6 . + CDS 90884 - 91249 397 ## gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein Predicted protein(s) >gi|228308117|gb|ACLR01000120.1| GENE 1 22 - 372 398 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469589|ref|ZP_04054581.1| ## NR: gi|228469589|ref|ZP_04054581.1| transposase Orf2 [Porphyromonas uenonis 60-3] # 1 116 89 204 204 209 100.0 5e-53 MAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTARPHRALNKKTPMQMLIPDYPN PLTTQPSKKQISKNNSPKAPSLKAPSPCRLTPNKELSLCTSAVKTTTSRVPQQEQN >gi|228308117|gb|ACLR01000120.1| GENE 2 906 - 2894 2637 662 aa, chain + ## HITS:1 COG:no KEGG:PGN_0935 NR:ns ## KEGG: PGN_0935 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 34 645 5 618 626 288 32.0 4e-76 MNLIPQEENINQSSALDQTTNTASTQEATTTPETTPSPETVAQVPLEEPVAEAVTTEDSA EKIPAPTEELTEEERQYQELLNKSDADIAKMSCAQITDDVVLLLQSGELPPRSIIDRYKS VFYSKMNSYLNTVSEENAKLRADAEAQEIRLKELLNDFKERNRKRQEEIAEEQKANLEVK RELLDRLRKLLTSSESFSVISKEYREITDSWRNAGAVPPGDMRQTQGEFEHLREQFYDLQ QINNEFRDYDFKKNLEAKEAIIQRAKELAESTDVTQAARELQDLHHRWRDVGPVAKELRK DLWKQFQELSAQINFNNQEYRNQQRTQEGENETIKRGIITQIEAINPNEINTFKDWRTFT DQIKELQAQWRKTGRVPRAVSEELYLHFRTACDIFFDKRKEFMRDRNKLISEQGDRKRAI IEEIEQIVAEERWPEGHSRIQELQTEWNELIHTNKHQALFKRFREACDTYYTHHKALFQA QREESKESVATAKQLLARAHELAAIEAPTDADREAAVTLQRDFNQLGYMPRKTRRKLQDE LKEQMDAFFNKLRASDRPRGDRRGNRNNNRRNFGPASPYGEEYDKILRRKEQLESDLQTY SNNKERLSVTSSAGENLLKMLEERCDAMQQEIDELDLKLRNIRKEQRAQQESDAPEATQT EA >gi|228308117|gb|ACLR01000120.1| GENE 3 3078 - 4193 1159 371 aa, chain + ## HITS:1 COG:VC2017 KEGG:ns NR:ns ## COG: VC2017 COG1559 # Protein_GI_number: 15642019 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Vibrio cholerae # 70 364 40 334 338 123 31.0 5e-28 MSRSRKSKSRQWRPSYFNDTSRRNHRNRSPKRTGGKLALWILIVILLLLSWAAYLLLRPA GSSSRQEYYAYVTDTTSGEALMTSIAQELEVKNPALLRSVARVIRLDSKLRPGRYHLTPK MSILSICKKIAYEAQDPVKLAFSSIRTQGELIDKLTAPLAMTSEELRTLLRDSVYCDSLG FTTETVRCMFLPDTHEVYWTTTPRELLHKYEQSYHKFWDKQRTALAQEMGLTPVEVSIIA SIVEEESSKTDEYGDIAGLYINRLHKGMPLQADPTLKFASGNFTAQRIGGELLKIDSPYN TYRYKGLPPGPIRYPQMTTIDAVLHRKPHDYLYMCARADFSGYHAFATTYAEHMRNAKAY QKALDERGITE >gi|228308117|gb|ACLR01000120.1| GENE 4 4206 - 4958 850 250 aa, chain + ## HITS:1 COG:FN0725 KEGG:ns NR:ns ## COG: FN0725 COG1179 # Protein_GI_number: 19704060 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Fusobacterium nucleatum # 10 246 2 231 234 178 38.0 1e-44 MTPMDGIPHWLERTELLLGSETLQRLADKHILVVGLGGVGSKACELLARSGIGRFTLVDH DKVDETNINRQVIAFRDTIGRPKVEVVEELLHRINPDIAVEAHAAYLSGDNIPTLLSVHH YDYILDCIDTLTPKCELILTAHQLGIPIISAMGAGAKLDPQRVSVAPMSKTHICALARFV RKRLRQLEAPRSVFDTPCVYSSEPSHEEAIRALPHGDQNKRSIVGTISYMPQLFGINMAA YVLQDLSTPQ >gi|228308117|gb|ACLR01000120.1| GENE 5 4973 - 5662 345 229 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 220 1 218 245 137 37 2e-31 MPTPLVTLDSICKSFGSLQILKEITLSIHQSEITSIVGPSGAGKTTLLQIIGTLLKPDKG QLLINGVDPFTLSAQKQAHFRNSQIGFVFQFHQLLPEFTAVENVAIPAMIAGMSKRQALS EAEQILTQLGLADRLKHRPAQLSGGEKQRTAVARALINRPTLILADEPSGSLDTQRKEEL IELFFELRDRLGQTFLIVTHDEDFAQRADRTISLQDGRIIADTATSEEL >gi|228308117|gb|ACLR01000120.1| GENE 6 5659 - 6387 542 242 aa, chain + ## HITS:1 COG:no KEGG:PGN_0421 NR:ns ## KEGG: PGN_0421 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 3 239 4 231 234 149 37.0 6e-35 MSSFKRGRIETWVLIAVSLIILSAIGKVLWDNNYNAQPLASLAGQTMNEQMGALPTDSTQ RRAGGTYAPPIQPNKSYKEEGNASQGVELSADYVGAPDRPQYTSQPKLREGQRIDLNSAD TLALQQVPGIGPSFARRIARYRDQLGGYYTVLQLQEVFGMEPDRYQRIKPFFYIGVKNYS TAFQSLRSDSIPAHPYLNYRQQMALARSIRKNGTIDSWHRIMSLEEFNRDDSVRLSHYFH FK >gi|228308117|gb|ACLR01000120.1| GENE 7 6397 - 7101 871 234 aa, chain - ## HITS:1 COG:no KEGG:PGN_0524 NR:ns ## KEGG: PGN_0524 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 9 229 8 229 236 175 40.0 1e-42 MVEQLALWERSLFLTLNAAHTPYWDAFMYLISSRWPWIVVAFGLVVFLFAKKPLRESILL VVMLALLITVADQLSSGLIKPYFERLRPSYHPLTADVVQSVYGYKAWGYGFISGHATNFM GLAMFTALAFRNRWYTVVVFALALTTAYSRIYLGVHFITDVVPGACLGLLLGYLVYLLYR WLRVKLYNVHPSTPQSRLCASTIGYLTAFLCVYILFLFAFAGELMGVMKGQAGW >gi|228308117|gb|ACLR01000120.1| GENE 8 7134 - 7970 479 278 aa, chain - ## HITS:1 COG:no KEGG:PGN_0525 NR:ns ## KEGG: PGN_0525 # Name: batE # Def: probable aerotolerance-related exported protein BatE # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 44 267 72 289 302 75 29.0 2e-12 MILDRGGKCVCSVLVTLLVGCLLLCSCGRADLSDTEQLPQTFVEADTLYKAGRYEQAAKM YDRTAEECSGRASLQSLCYYRAGVAYSQTEQRGWAIVSYRKALLLTPDYKEARHNLRLAE EARMNMPAMEYPIVRRWADACAYALPMSGWLVISIVLFVGAVVTCLAFFLGRSRRVRRTS FYAMLILLLLWGCTLLMILHRRHYDKQTDVAIVCSVKAPLYALEDDPAVAEPVTELYDGA ELRIASTAEGGSYLHVVLPDGTEGWLPKANVEPVAIIQ >gi|228308117|gb|ACLR01000120.1| GENE 9 8120 - 8356 144 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLYQLSYFRIYTTDRISRPKVVTTPWAVMDSNHRRLTPAELQSAPFGHSGNCPFGRPDCS VNAFVSAKVQKTFVSATA >gi|228308117|gb|ACLR01000120.1| GENE 10 8465 - 8947 628 160 aa, chain - ## HITS:1 COG:AF0834 KEGG:ns NR:ns ## COG: AF0834 COG1528 # Protein_GI_number: 11498440 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Archaeoglobus fulgidus # 3 160 4 163 173 115 39.0 4e-26 MKINDKMATLVNAQINAEFHAAYLYLSMSFQMEEEGYDGFAHWFLQQYHEEIEHALEIAH YLQLRSGHPQLTGVAEMPQHHGTPLELFEAAYKHECHVTELIHNIYKEALEASDYATSSF FKRYIDEQVEEENTVLGIIDQLRMAGEKGIYLVNAKLSKR >gi|228308117|gb|ACLR01000120.1| GENE 11 9388 - 10788 1139 466 aa, chain + ## HITS:1 COG:no KEGG:BF2484 NR:ns ## KEGG: BF2484 # Name: not_defined # Def: tyrosine type site-specific recombinase # Organism: B.fragilis # Pathway: not_defined # 59 461 4 397 400 275 40.0 2e-72 MPKLRKTPQNPTIFSKFSAHSPAQSANFATEQETKKRAKTNLSHKAPKRIGRLGQIMRAR LRLDRRRAKADGTYPIIMYYNFKGRSVVEPTGWSVFLEQWDDEMREVVHHPEARMLNAML HERIVSLEEALIRLQYEGALDDIDSVSEVRQVVGEYLGLTVRKIAKRVPSGGFWETFNEF AESRPAESTRETYRHTMRRIQAFDKRCEELAWEDVDVAWLKRFEAFLAKTSRSANGRGIL LRNIRAVFNFAIDEERTTLYPFRRFKIRTEQTRKRALTVEELREIVQLDLPEDLALHRDV FLLSFCLIGINMVDLSRLTEVKRGRIEYKRAKTGRLYSIKVEPETKKLLARLKGQKLLVG VFEGYKNYKDYIGHCNDALKKLGRVHIGKQGRRTYKPICDELTTYWARHTWATLASRIDI PKDTIRRALGHADNSVTDIYIDFDDTKIDEANRKVLDYVFGGIKKW >gi|228308117|gb|ACLR01000120.1| GENE 12 10849 - 11451 625 200 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470188|ref|ZP_04055095.1| ## NR: gi|228470188|ref|ZP_04055095.1| hypothetical protein PORUE0001_0064 [Porphyromonas uenonis 60-3] # 1 200 1 200 200 349 100.0 5e-95 MRHFAPLLLLGAILLTACNPKQEPTQKGLDPSARLYINVRNNTMKVTNSTDTTTTDDPVP TPREVVERAGCFMFTEPRQGLTDRPLGIDDVQKDYEHERIMMWGGMIMNDFDNKEGRLEL NDYFLKVRDLRILAPMREGETENPIIAYIPNKRMEDAEAAITKAYNEGNYNEVYRLFQEL YTAIPTTTARWKALKEKGLQ >gi|228308117|gb|ACLR01000120.1| GENE 13 11509 - 11832 320 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470228|ref|ZP_04055135.1| ## NR: gi|228470228|ref|ZP_04055135.1| hypothetical protein PORUE0001_0065 [Porphyromonas uenonis 60-3] # 1 107 19 125 125 202 100.0 6e-51 MGTLCGASFTENGSQIKAFGKRAKRRGQNEAQAVYDYGMNAYKVYHSIGNTNYIPIVQVS GWSSNNINWSLTPRVYNITSEYFVVRILSNNDNPHTKAISYVAFKTE >gi|228308117|gb|ACLR01000120.1| GENE 14 12022 - 13269 1017 415 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470234|ref|ZP_04055141.1| ## NR: gi|228470234|ref|ZP_04055141.1| hypothetical protein PORUE0001_0066 [Porphyromonas uenonis 60-3] # 1 415 1 415 415 827 100.0 0 MTKKFISAILLALPLLYCQSLSAQDATQSLNPLSLLSEYNLQDVGLLAKPNEDGKAWGAL FQFGRNVPFDYKGDAPREETPVSGNDPKVWGKSFLMKAEGQAKYDWLTTGALGDKWTDIV ALASDAPATYRGDNGGDPCPKGMHIPSYTEWVSVMPSSFAVADFTGKIGFKHTTESITIQ GQTKEYEADYYSKTKNEIVGIKCSDESGKYRTAFRWSWSDYGLLIEAKWIGQRYATMQEF VAETDFWTTDQERIVRRFLPASGYISGSTGLASQRYEDLYYWSASASLKNEGFAPTVWGY PYDEESGDGGAATYENVMGRYSAACIRCMMGQPTSTEIQTPAQQVALSASSDANGVLAIS VTPDLVGASYNLYTSEGLLVNRGILSDTQQWINIAHLPHGYYILTAGQQSVRVVR >gi|228308117|gb|ACLR01000120.1| GENE 15 13361 - 13537 58 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSSSTLPWRKSNNSSVQILESPRRNKQILRNFDLLLPKFHFILPNFYFAPPWRIFVFQ >gi|228308117|gb|ACLR01000120.1| GENE 16 13671 - 14732 1275 353 aa, chain + ## HITS:1 COG:VCA0774 KEGG:ns NR:ns ## COG: VCA0774 COG1087 # Protein_GI_number: 15601529 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Vibrio cholerae # 9 344 3 328 338 333 48.0 2e-91 MHEHTPKSILLTGGCGYIASHTAVVLQEAGYGVILVDNLSNSRREVVDAIAQITSVRPQF YEVDCTDAVAMGKIFEHHKGEIEGVIHFAAHKAVGESVEQPLRYYDNNINSLITLLRCME RYGVQHLVFSSSCTVYGQPTAEHLPITESAPRQDATSPYGNTKRINEDIITDSVRSGMPL QAVILRYFNPIGAHPSALIGEEPVGTPQNLIPFLTQTVAGLRKELVVFGNDYNTLDGTCI RDYIDVMDLAQAHLAALRRLHRSDVGSTPAHYIYNVGMGRGLSVLELIQAFERATGRTVP YRIGDRRAGDIEQIWADTSYGEQELQWHAEIPIEESLRRAWHWQEALDKRHIN >gi|228308117|gb|ACLR01000120.1| GENE 17 14767 - 15147 665 126 aa, chain + ## HITS:1 COG:SA0760 KEGG:ns NR:ns ## COG: SA0760 COG0509 # Protein_GI_number: 15926486 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Staphylococcus aureus N315 # 1 126 1 126 126 125 53.0 2e-29 MNFPNELKYTADHEWVRINGNEAVIGITDFAQSELGEIVYVDVDTEGEKIERNEVFGSIE AVKTVSDLMMPMTGEVLEVNEELEDAPELVNEDPYGKGWIIKVAITNPAEADELLDAASY QEKIGK >gi|228308117|gb|ACLR01000120.1| GENE 18 15160 - 15669 755 169 aa, chain + ## HITS:1 COG:PAB1077 KEGG:ns NR:ns ## COG: PAB1077 COG0041 # Protein_GI_number: 14521838 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Pyrococcus abyssi # 3 166 7 171 174 167 53.0 6e-42 MQPLVSVIMGSTSDLPIMQRAAKQLEALEIPFELLALSAHRTPDEVAQFARSAEERGVRV IIAAAGMAAHLCGVIASMTTLPVIGVPIDASLEGLDALLAIVQMPPGIPVATVGVNAAQN AALLAAQMLALGDPEIAQRVRAQKASLKEKIVKANKELAQISDYKYKTN >gi|228308117|gb|ACLR01000120.1| GENE 19 15760 - 17478 1466 572 aa, chain + ## HITS:1 COG:CPn0373 KEGG:ns NR:ns ## COG: CPn0373 COG0821 # Protein_GI_number: 15618288 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Chlamydophila pneumoniae CWL029 # 8 571 12 608 613 345 36.0 1e-94 MSLCRYQRRQSYSVPIGEARLGGESPLLLQSMANVSTMETDLCVAQALRCASEGCQLFRY TAQGVREATNLGVIAEQLRAEGCRMPLVADIHFRSEPAFEALKHVEKVRINPGNFLHQKA SLDDETARAEIAEVFGRFVREAQARHRTIRIGVNHGSLSERILARYGNTPEGMVASCMEY LEVCDSLRMRDVVISMKASNVLVMTQAVRLLVERMDALDLHYPLHLGVTEAGAGEDGRVK SCIGIASLLVDGLGDTLRVSLSEEPEAELRFGKKLIAYIDQLATFDQTRPIYGSHTYRSV TRNQAQGAKEELAKYPAVLTLDSDGKALDVGFDARLEETQLAFAEERQTLQVINLDTPMD RLVQHLEDFVAHWDGHSWLELRGAELDYIYKVRYAVDQLSRRGAIPRILLHYASYARGYD DILIDCATQLGSLLLEGIGNAVAFSAVAMSPKARLDLLNGILQAVRIKMTHTEFISCPGC GRTLFDLQQTVAQVKQRLAHLPNLKIGVMGCIVNGPGEMADADYGYVGGGVGKVDLYRGQ ERLVHGIPSAEAVDHLIELIKSDGKWCDPPQQ >gi|228308117|gb|ACLR01000120.1| GENE 20 17499 - 17933 472 144 aa, chain + ## HITS:1 COG:FN1028 KEGG:ns NR:ns ## COG: FN1028 COG0756 # Protein_GI_number: 19704363 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Fusobacterium nucleatum # 4 143 6 145 146 170 57.0 8e-43 MLPIRIINRSSYPLPQYATALSAGLDLRANLEQSVSLAPLERRLIPTGLYMEIPAGYEGQ VRPRSGLAIKQGLTVLNAPGTIDADYRGELQVILINLSQEAVEIAPGERIAQLVFAHHEQ CDWIEVESLSDTQRGDGGFGHTGV >gi|228308117|gb|ACLR01000120.1| GENE 21 17930 - 19693 1701 587 aa, chain + ## HITS:1 COG:no KEGG:PGN_0995 NR:ns ## KEGG: PGN_0995 # Name: not_defined # Def: TPR domain protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 440 573 23 149 171 74 35.0 1e-11 MKSFGRQTLLLLLLALLGLTSAKVSAQSTETKETAYSLIEDYANILFFAGAQEPAIGYLY YLYDGYPDQQVRTAVPLASWLDLTSRQNEAKDLLKTLFTKRSDQARASQELVRYYLTLLY SSGEIDEADSLFAMLPREVSSHPNILLVHLTSLAILNKNQELIEQIAQLDTTLLTDPQQQ EVYYRLVAQASSKLGDYQRMLQAAERLVALEPSNLGNHHTRLEALNALRLDDQIEKGLAQ LQQTLSLPDAYIEVTRAELIASRRDTKQSADYLYRYLARQDSISSVSARIVSMLLPDFSD ISQIPSEFIPALTRLAELEPTDPKLFADLYMIVSTQEGKAQAEQLIKHFYDNPKTAYSAV LVQASQMKEQERLEYLTSARKRYPANLQILALYAGELIAQDRLDEAKQAISSQLDWTKLK TAEGVKPTEGLRLLLLYSSLIYERQKQSAQALEVFEIAERLFPRDAILLNNYAYYLYTLS PQDSSHLAKAEQLAATAYGLAPEEANILDTYGTILLAQGKTTMAQLMLSQAVERAEQLGK PNAGYIERLGDAYLQGGDRQAALQQWQRAYQLAPTEALQQKIDALNP >gi|228308117|gb|ACLR01000120.1| GENE 22 19710 - 20531 638 273 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470187|ref|ZP_04055094.1| ## NR: gi|228470187|ref|ZP_04055094.1| hypothetical protein PORUE0001_0073 [Porphyromonas uenonis 60-3] # 1 273 1 273 273 486 100.0 1e-136 MRHSLPYTLLLISSLLLLLACGTRTTHSSSPKAPTVADEGGCALGDSWLSDQILQISHTP EHRIANAELSLGNSQLSTRIDLFVDQSEGMMISARPLPFIEALRIYVLPDHVALYDMMHD AKVTITYSELSEQLAAEVSYTLLRDLLLGQPTYLADSEYSVEKGSLEVSLHSPKGKPWVA NYLVNAQCQLGAIRIASTDQSQKGYLQGRYSYQSGSSKAIATQLLVSTPRKRLSMQLKYS KSKVLSPAQLRERITEPRDGYKTMTLDELLRLL >gi|228308117|gb|ACLR01000120.1| GENE 23 20557 - 21858 1643 433 aa, chain + ## HITS:1 COG:ECs4491 KEGG:ns NR:ns ## COG: ECs4491 COG4942 # Protein_GI_number: 15833745 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Membrane-bound metallopeptidase # Organism: Escherichia coli O157:H7 # 28 432 58 425 427 69 25.0 1e-11 MSHLRRLLYTFCLLTLTGTLLLAQQPKKSAAVRKLEKQRTELLNAIKKTDKEIKALGQSL SEKNRQDKLVRQQIKDRSQVISLLDQEVSLLNVSIDSLARQIGVLQQEEEVSRGRYAQTL RALQQRPRFEDRLLFILSASSFDEGIRRVRYLSAYARAHKEVAAQLHDTRERLQASQNQL IATKQQKGTLLQLRAEERVKLEQQQKSIASEVKELSSERQSLQKKLKQQQRKAEQLNQAI QDQIAREIAEAERKAREERERLEREARNKGQKVPKQAERRAETKDGYAMDATERKLASSF AANKGRLPAPVKGRYRVIRRFGLQQHDDLALVQTRNGGIDIQVSRGTQAVAIFDGVVSKV FVVPGYNNSIIIRHGNYLTVYANLQNVSVRAGQKVKTGQVLGTVASDDEGQYGVMQFQVW HERTKLNPQAWIR >gi|228308117|gb|ACLR01000120.1| GENE 24 21868 - 22842 326 324 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 320 3 312 317 130 29 3e-29 LIKAVHPMQRAESTRHLVVAMGAFDGVHLGHQALIRQVLTIAERDHLTSGVVTFDPHPQL VLHPERPFRLITLEREKELLLHQMGIERVAVIPFTVSLSQMSAEEFLRTYLDEQLHIHTL VVGFDHHFGHDKGLDFADYQAIAQHYGIRCIRGEAYTLGDSTSQDPISSTAIRRWIDTGA VTEAERQLGHPYTILGKVKTGLQIGRKLGYPTANIEVPSPYKALPPAGVYMARTTIDPFG ATQQRDIPSMLYIGTRPTLELAKEETMIEVFLMGGEEYHLYGQELQISLCDRLRQELHFE SLDALRKQITRDEEAVRRYFQLSD >gi|228308117|gb|ACLR01000120.1| GENE 25 23139 - 24074 717 311 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470218|ref|ZP_04055125.1| ## NR: gi|228470218|ref|ZP_04055125.1| hypothetical protein PORUE0001_0076 [Porphyromonas uenonis 60-3] # 1 311 1 311 311 586 100.0 1e-166 MKQRNISLSHLSDRLSDIPVPVSVRRWRQGAIAGGVLASGVAVSALALLYWLRRLRSKSY SYDTRSFDTLEIGAGVQIQINFDTVSHASLRVSYPNALRHRVKVRMSNKTLSISRLPYHN RWVPREVFAELTLPSISQLRVVGDAKVVATGCNKPETSFDLLQIGGQVEGLTIEANYAEM QLRGSAKANLYLSCKQSFIGYSGSPEIRAVLQSDGETHITATGSGRATLLGRTKTLSLTA SDRSVVEANTLSVETADALLSDSAECQLHVTDQLSYTLCNESKLGLIQPPKRIAKSDVLD SATLETLDGKR >gi|228308117|gb|ACLR01000120.1| GENE 26 24131 - 24853 785 240 aa, chain + ## HITS:1 COG:ECs0864 KEGG:ns NR:ns ## COG: ECs0864 COG0670 # Protein_GI_number: 15830118 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Escherichia coli O157:H7 # 26 240 17 233 234 172 49.0 5e-43 MTTPPPYNPSNDTASEGQTYMVAPLVSTVMRKTFGWMAMCLLITALTAMGFVNSGLFYHI ASSGAMWLLIIAELVLVFVLSARINKMSVATATIMLIVYSALNGVTLSFIFVVYSLGSIA KTFFITTGMFGVMALVGATTKRDLSKLGSILFMALIGLIIASLVNIFLRSSGLDWIISLI GVVLFTALTAYDVQRVKQLAAESDLYDDTQVGRLAVISALSLYLDFINLFLYLLRFFGRK >gi|228308117|gb|ACLR01000120.1| GENE 27 24872 - 25873 1053 333 aa, chain + ## HITS:1 COG:no KEGG:PG0602 NR:ns ## KEGG: PG0602 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 11 333 24 346 346 252 43.0 1e-65 MPRASLGSTLLLLLFGLLPYTTVQGQEAHTFGFLLQPPSAQSLAMGGKVISYIDANPGLA LDNPALYGHEVAGRMFLSYFNYMRGTHSANALYGLPVGKRGAWAVALRSTYYGKMQGYDT QGVATAPFQAMEMSLSGLYSYDLTDRLRGGLALKMLYGQIERYSAFALVADAGLSYYRSD WGTSLGMTISNVGGMLKSYGLSRRMPQWDIRLGMSQRLAHAPIRFHLTLHGLTPYNIQTW GAGRSTGVRIASHFAGGVEFVPSEQFWVGIGYNAKQAVDLSERGAKSLSGLSAGVGFNQR HYRLALGATYYNPQMLGLMFSFSTTFGNDKYVY >gi|228308117|gb|ACLR01000120.1| GENE 28 25863 - 26549 178 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 72 228 137 286 863 73 31 5e-12 MSTKQIQIAIDGYSACGKSTLARALAKELGYTYVDSGAMYRAVALFAMRRGLWDGEQFEL DKLREELDGVLVTFDPKTGHTLLNGEDVESEIRTLEVSRPASVVASYDFVRTMLVAQQRR LGEAGGIVMDGRDIGTAVFPEAELKIFLTASPKVRAQRRYDELRGKGDQTTTMEMVSADL ADRDYRDSHRAINPLRQAEDAVVIDNSELTIDEQTQVALQIAREREQK >gi|228308117|gb|ACLR01000120.1| GENE 29 26556 - 27476 318 306 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium acetobutylicum ATCC 824] # 9 280 3 267 642 127 30 3e-28 MKANNQIGRVEIDPESGFCFGVIKAVSRAEEILRQEHGEPLYCLGDIVHNRAQVDRLESL GMRTIDHEQFSHLSNARVLYRAHGEPPASYTYAAENGIEVVDATCPVVLRLQQKVRQAYL QHANDDTQIVIFGKPGHAEVNGLVGQTDGKAIVVREPKDLDLVDFARSIELFSQTTMQED QLEEMLSLIQSRLSDTATLVSHNTICQQVSRRIPNIREFAKSHDRIFFVSDQKSSNGRVL YQNCLEVNPNTTFITYPSELTYDLVPSHEESIGVCGATSTSREQLQEIAEIITRWMQQRQ NAAQSN >gi|228308117|gb|ACLR01000120.1| GENE 30 27489 - 28532 1230 347 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470173|ref|ZP_04055080.1| ## NR: gi|228470173|ref|ZP_04055080.1| hypothetical protein PORUE0001_0081 [Porphyromonas uenonis 60-3] # 1 347 1 347 347 669 100.0 0 MRRLPHPFTTLTSLLTCLLLLVSCGSGEVQIKIDSEKADNTGYTALLYTLQDGGARIDTL AFTKAGETFTYTFDRDSIHGAYIVVGNFEQYYPLDLQSQSKVRFHLEVASPHNCYDLDEA KRTGYKAFLKKATPLLRTYDQAVADNDLDNANKEAKLVMQEFIAFASNLKKKEQKRYAGQ MDWALEIMSLYEDGLSQLRQALMDGTIDSALFTPEIYQFVITPSSASQKSYPTLRAINKS DTITWRPSSYPQGRILFGSDIEWTHVRIPQGTQQSITLLLPLGSVDSLGQIANRLGAYNY VIDAPEPLRVQLYRALAPDEQAGVMHYRTDSNHALVVDSISYFQYNE >gi|228308117|gb|ACLR01000120.1| GENE 31 28525 - 30078 1499 517 aa, chain + ## HITS:1 COG:slr0904 KEGG:ns NR:ns ## COG: slr0904 COG0606 # Protein_GI_number: 16331658 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Synechocystis # 4 509 2 507 509 488 49.0 1e-137 MSKLVKTYSSALVSLDALLVTVELSVSKGFNISMVGLPDAAVRESLSRVYTACHSCDAHP KSFKTVINLSPGDVRKEGTVFDLPIAVALLAANEIIPEEPLSDYVMAGELSLDGTLQPVK GILPMAIMAREQKFKGVIVPKENAREAAVVNDLEVYGVESLREVIDFIAGRAKLEPTTVN TREEFAQQQCFSSVDFSEVKGQPALVRAMEVAAAGGHNIIMIGSPGSGKSMVAKRLPTIL PPLTLHEALETTKIYSVAGALKGNVSLMKSRPFRAPHHTISNVALVGGGTTPRPGEVSLA HNGVLFLDELAEFNRVALELLRQPLEDRTITISRAKATFSYPASFMLVAAMNPCPCGYYN DPNRECTCPPGAPAKYLQKLSGPLLDRIDIQIETRPVDFDSLSDRRPSESSAAIRERVIK AREIQLQRFAPYPGIHCNAQMTPRLMKQFAYVEGDAMQILRQAMIQRDLSARAYDRILKV ARTIADLDGSEQISLKHISEAINYRNLDRSSWGIVSV >gi|228308117|gb|ACLR01000120.1| GENE 32 30140 - 31321 1492 393 aa, chain + ## HITS:1 COG:no KEGG:PGN_0023 NR:ns ## KEGG: PGN_0023 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 33 392 30 390 391 483 67.0 1e-135 MKLRNLFITTLMLLGLGALTSHLTAQEVSQDRRFNPVLTSVPSLNINPSARAAGLADMGV STTPDVQSQYFNPAKYAFLSSKAGISMSYTPWLAKLVKDIKLMELVGYYKIGRESNQALS ASVRYFSFGAIEQFDNMSKSLGEAHPNEFAVDFGYGLQLSDSYSMAVALRYIRADNNLAT GEKSAGNAFAADISGFYNRYFDLGSAESLWTFGFNIKNIGTKISYDNGGTSMFIPTNLSL GTGLLYPFDEYNALAVNMEASKLLVPTPPVKDQANPEAYDAARQKYLNTSSIAGIFTSFA DAPGGFKEEMQEISYRIGAEYSYNNRFFLRAGYHYLHPYKGNLQYFTAGAGFKMNVFSID ASYLVSTVQSNPLDQTLRFTIAFDFDGIRELLK >gi|228308117|gb|ACLR01000120.1| GENE 33 31334 - 31810 419 158 aa, chain + ## HITS:1 COG:BH0108 KEGG:ns NR:ns ## COG: BH0108 COG0245 # Protein_GI_number: 15612671 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus halodurans # 6 156 3 155 157 167 56.0 9e-42 MTCSYRIGSGYDIHRTTPDRPLILCGIQIPSPLGLLGHSDADVALHALMDALLGAIGQRD IGYHFPDTDERYRGADSTKLLATVMQMVREEGCQVVNADLTIIAQQPKLSSHIPQMIVRL KELLDTPCVNVKATTHEHLGPLGNSEGIAAQAVVLLTY >gi|228308117|gb|ACLR01000120.1| GENE 34 32377 - 33297 1163 306 aa, chain + ## HITS:1 COG:PA4394 KEGG:ns NR:ns ## COG: PA4394 COG0668 # Protein_GI_number: 15599590 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Pseudomonas aeruginosa # 36 289 14 266 278 165 40.0 1e-40 MPEINPENIILPDSALTKEEIVDSIVNFNLADTLGSWIDAALDIGIRVLLALVIFYIGRW LIRIVMKGVTKILDRRIEPLGLRHFIRSIARAGLWIVLVIMVINILGFAAVSFAALLASL GVAIGMALSGQLQNFAGGAIILITHPFRIGDYIVYQDVEGTVQDIGIFHTSITTTDNTKI YLPNGNLSTNIIKNTSEMPNRRCQWKFLVDYDVPFERAKGILLTELLKDPRVLQDQGVLA VISDMTESNYTIMIRVWCTNDNMWDLFWDFNGKATELFAGEGFPRPYSKVELRNSTPYNK ETKSDD >gi|228308117|gb|ACLR01000120.1| GENE 35 33360 - 35849 2594 829 aa, chain + ## HITS:1 COG:FN2122_2 KEGG:ns NR:ns ## COG: FN2122_2 COG0072 # Protein_GI_number: 19705412 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Fusobacterium nucleatum # 159 829 4 652 653 352 32.0 2e-96 MNISFNWLQQYLPRLEGYNPNEVAETLTAIGLEVAGVEQTESVRGGLRGVVIGRTLTCIP HPNSDHLHVCTVDLGEEEPVQIVCGAPNVAAGQTVVVATVGTTLYGPDGEPFKIKKSKLR GEPSMGMICSQVEIGMGADSSGIWVLEDETVRPGTPAADYFDLASDTVIEIDITPNRVDA TSHYGVARDLAAYYSYREGQVIRAERPTLTKPQAVDAKAPAIQVEMEVSAEDCPRYQGVT IRGLKCVESPDWLKERLQSIGQRPINAVVDVTNFVLHEIGQPLHAFDAQKIAGGKLRIAH LPAGTPFTTLDGVEHKLTGMENMICDSQLTPLCIGGVMGGLDSGVTMDTTDIFIEAANFN PTITRRAARSHGLSTDSSFRFERGLDPEATDWALQRAVSLILEICGGTIAGETVDHYRMH LDPVELTISTDYVSRTIGRDLTAEQLQLILDALEMSPKAVEGGAFAISVPRYRYDVTRPV DVVEEVLRIYGYNAVPLSGYVHASLSKQSDQDHIYHAQLKLSELLTGFGYREILNNSLTS RQYFEGQKAFDLNQLVPIENPLSQELNVLRPTLLVGGLETISDNVHRKQPYCALYEWGNV YRYKQNDQATTPLDQYTQAHRLGLWLSGTLMPNNWTTAGEATSPYMLRGVVEKLLAHMGF TAEDYSVTTPAECHDLWSEVVCYTDREGKSLAYVGVISSYWLTKCDIKQPVYYAELYSDT LMAHLLQHKVVSTELSKYPTVKRDLALLIDNNITYEALASTARKAERKLLQRVELFDVYT GKELPSGKKSYALSFYLRDDKGTLRDAQIDAAMKRIWQAIEQEYHATLR >gi|228308117|gb|ACLR01000120.1| GENE 36 35917 - 36642 892 241 aa, chain + ## HITS:1 COG:Cj1172c KEGG:ns NR:ns ## COG: Cj1172c COG0217 # Protein_GI_number: 15792496 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 1 237 1 235 235 183 48.0 2e-46 MGRAFEYRKARKLKRWGNMARVFTKLGKEITIAVKAGGPDPDTNPRLRVLVQTAKKENMP KENVERAIKKATDKDSNTDYKEMNYEGYGPHGIAIFVETATDNTTRTVANVRSYFNKFGG SLGTTGSLEFLFDHRCVFHVQPKAEVDQEELILDLIDYGVEDIEQDEEEWVIEGDFSQNG ALQAKLEELGFEISSVEFIRVPKDTRSVSAEEREELNKLIERLEEDEDVQNVFTNMEDEE E >gi|228308117|gb|ACLR01000120.1| GENE 37 36743 - 38530 2188 595 aa, chain + ## HITS:1 COG:BH1342 KEGG:ns NR:ns ## COG: BH1342 COG0481 # Protein_GI_number: 15613905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus halodurans # 4 595 13 605 609 740 59.0 0 MQHIRNFCIIAHIDHGKSTLADRLLEYTNTVQKKDLQDQVLDNMDLERERGITIKSHAIQ MSYTKDDVEYTLNLIDTPGHVDFSYEVSRSIAACEGALLIVDASQGIQAQTISNLYMAID HDLTIIPVVNKIDLPGASPEEVQDQIVSLLGVDPDEVLFASGKTGQGVNEILDAIIERVP APVGDPEAPLQALIFDSVFNPFRGIIAYYKIVNGSIAKGDKVKFINTGMEYDADEVGVLK LDMMPRDRVNTGDVGYIISGIKTSKEVKVGDTITHIQRPASEAIAGFEEVKPMVFAGVYP IDTEDFEDLRASLEKLQLNDASLTFTPESSAALGFGFRCGFLGLLHMEIIQERLDREFNM NVITTVPNVSYLVYDKKGGVTEVHNPSGLPDPMQIDHIDEPYIRATIITDTAYIGPIMTL CLDKRGILIKQEYISGNRVEIYFDLPLGEIVIDFYDKLKSISRGYASFDYHLSDFRPSKL VKLDILLNGEPVDALSTLTHFDNSVPFGRRMCEKLKELIPRQQFDIAIQAAIGAKIIARE TVKAVRKDVTAKCYGGDISRKRKLLEKQKEGKKRMKQIGNVEIPQKAFLAVLKLD >gi|228308117|gb|ACLR01000120.1| GENE 38 38634 - 40226 1931 530 aa, chain + ## HITS:1 COG:lin0047 KEGG:ns NR:ns ## COG: lin0047 COG0305 # Protein_GI_number: 16799126 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Listeria innocua # 19 470 1 442 450 370 45.0 1e-102 MPSLKPTQQKQLRKPQASLDRTTEGRVPPQATDIEEAVLGAILLEKEAFSEISTILEPES FYINAHQIIFEVMRDLSLEEQPIDLHTVSQRLQRDGKLDQVGGMPFLVELSNRVISAGNL EYHAMIVAQKALSRNLIKFSTEVLTAAYEDTIDIEDQMETAEGTLFALSQKHLRKDVQPI NTVLKVAIDDIKAAANSAEGISGISSGFDGIDAMTAGWQKSDLIIIAARPAIGKTAFVLS MAKYIAVDNKIPVALFNLEMSSVQLVKRLISNVCELPGEKLKSGQLEQFEWTQLDERISV LENTPLYIDDTPSLSVFELRTKVRRLVREHDIKIIIIDYLQLMNASGMNFGNREQEVSTI SRSLKMLAKELDIPIIALSQLNRAVELRKNDSGTNSKVPQLSDLRESGAIEQDADMVCFL HRPEVYGIMQDDNGDTKGIGYFIIAKHRNGPIGDVRIGFRGEFAKFYPLEEANMHYTSQI NGVKARQTSSATPGVTPGAEAGNPFGQTFNVGASDFNPMATDDEESDFPY >gi|228308117|gb|ACLR01000120.1| GENE 39 40438 - 40602 60 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVRKKDFEVPKNFRFPPWRFPNTSGGNMIRQEVAEPVQADSQPLTALLLVSSL >gi|228308117|gb|ACLR01000120.1| GENE 40 40816 - 41928 1435 370 aa, chain + ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 8 362 2 354 363 224 35.0 3e-58 MQEPNKPRVIISGGGTGGHINPALAIADEVRRRYPESQILFVGALGRMEMERVPAAGYEI VGLPVMGMDRKRLWRNFKVLRSLIKSRLMVRKTLADFHPDLAVGVGGYASAPTLKEAQRS GIPTLLQEQNSYAGVTNKFLAREAKCICVAYPGMERFFPSDRIILTGNPVRHAIEYNHTT REEACAYFALPSSLSRTILVMGGSLGARTINESVVAALPEWSKLGYQLIWQTGRSYEHEA QELIKEYDISKRAYVSAYVERMDLAYKLADVAVSRAGALSVSELCLSELPAILIPSPNVA EDHQTKNARALSTRGAAILLLDSEAVGQMGLTITELLKDETRREKMKAALRDLATPQAVE RIVDQMELLW >gi|228308117|gb|ACLR01000120.1| GENE 41 41964 - 43337 1265 457 aa, chain + ## HITS:1 COG:FN1456 KEGG:ns NR:ns ## COG: FN1456 COG0773 # Protein_GI_number: 19704788 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Fusobacterium nucleatum # 1 454 9 463 468 222 31.0 1e-57 MSYVYFIGIGGAGMSALARYYHLKGCNVSGYDRSHNMYTDELEQLGIAIHYDSDASWLES APMTPDNTLVIYTPAIPHDHPELCYLRSHHFRVLKRAEALGVIAESYRTLAVAGSHGKTT TTNMLAHILDGAKEVGCTAFIGGLAVDTGSNFIYSDHSNLLVVEADEYDRSFLHLNPYMA VVTSTDADHLDIYGDYAGYLAGFEEFCSQIQPGGTLLMKEGLPIKPHLAEGVRTLTYGSA STADVYYDHVTVGDGTIRFDWHYPEAGIHLEQVALGVPVRTNLENATAAMTIAYLNGVAP ANIVRGVESFRGTKRRFELVLQTDRHLLIDDYAHHPVELDSSIRSIKEIYGSEDVLAIFQ PHLYSRTADFYQDFAKSLSHVDQVIVLDIYPAREEPMPGVTSELIYKELTAPHRWLCTKE ELLPLLRQIKLPRVVVTVGAGDIDKLVLPIRDYLATL >gi|228308117|gb|ACLR01000120.1| GENE 42 43348 - 44127 662 259 aa, chain + ## HITS:1 COG:no KEGG:PG0582 NR:ns ## KEGG: PG0582 # Name: not_defined # Def: cell division protein FtsQ, putative # Organism: P.gingivalis # Pathway: not_defined # 37 241 38 242 258 154 38.0 3e-36 MRYLYLSLALLLVGLLCYMALVPPQIAPARIVDVKADIRYEGEHPLMPERDLVSELKALG FRPIGQSVDSLSTMAIESQLIRNGLFSHIDLYTTPGGVLHVSMLQREPLFTLLTPQGNYF VCKDQTVVPIERSEDYYTTFLPVSGSISVEQASHQLYPLMQLILSDPLWRDLFIHIYVDP YRGVIATPRASNTEIILGSSSNWEEKLDKLKLFVEQVIPIFGWNSFISVNLEYKDQIVTV PSEEGALQHSRPSLPAQTL >gi|228308117|gb|ACLR01000120.1| GENE 43 44161 - 45624 1538 487 aa, chain + ## HITS:1 COG:BS_ftsA KEGG:ns NR:ns ## COG: BS_ftsA COG0849 # Protein_GI_number: 16078592 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Bacillus subtilis # 4 444 3 421 440 102 24.0 2e-21 MSYNEDLYTAIDLGSATIRGMVGTKKDGKVLPIAIAEVPTSNAIRKGVVNNMEELHNKLK VLIDRLNEQLPDKHTEIKKVYVGFGGKSLMSRSYKINHKMDNPDGEEISDYHINLINERV KNYRLNAHEVLDVSDPYCLVDGRVERNIKGLLCTEFSIHFNLITTRSSNVNFIRMAIEDR LGLELEAILPSPCCEADVLLYPDAKTLGVALVNIGAGTSSVAIYKNDTLKCLRVIPFGSK NITNDLMSLHITYPEAEKIKLESATPFTDAYDDETLTLSSPDGTRDRELKMRDVNSLVTA RMKEITANVLRVIHDFEAGARLGSGIVLAGQGALMTGFVNYLQGESKFVSLAREFNDKVY KGDTPLSGDVDYAGCAGLIYRAEVNCIGSFDAPQSTPVASSKVATPAPQATVQASQPVEA HEENHSTATPQETIEEQPQQQPQTSLFDLPDIDQPRKATKREHKSAKRKKSFNWFSKIKD VLTDDID >gi|228308117|gb|ACLR01000120.1| GENE 44 45676 - 47097 1528 473 aa, chain + ## HITS:1 COG:TP0390 KEGG:ns NR:ns ## COG: TP0390 COG0206 # Protein_GI_number: 15639381 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Treponema pallidum # 21 325 19 321 418 174 41.0 3e-43 MDNADKLVNFKYNKAVAQKKLIKVIGVGGAGGNAVKHIHASGLQGVSYLLLNTDEQDLAK SGLKDVAVIGQKLTQGLGAGSKIEVGEEAALEDRELIHSLLDDNETQMVFICAGMGGGTG TGAAPVIAKIARDMGLLTVGFIFMPFVREERQRMIKAAQGAERMRQEVDSLVIIANENIN QVYGELPWDESLNKANEILANAVRAITMVITNEMEMNQDFADVRTTLKDGGIAHISIGYG EGSDRVSKAIDSALRSPLLNNDDITTATRLQLAIFYDPSDALTTDEMDEIKKLTSSIRNL QNNKSGHAFNEELGNKVMVVIIASGFQKEAHMPMTAMDVEDYVRQTEIEKEQNKLLNQYY SEFDLEPRSSLPTFVPIVLTDDELDRDDLIDYLDEEPAKNHSYSEVEERRAKYKYGNQTP AMSQTLDTSKVAQRSTPTRMPSADVEELPSVDPTQEGAEPTPQPVNQPKIIKF >gi|228308117|gb|ACLR01000120.1| GENE 45 47113 - 47865 360 250 aa, chain + ## HITS:1 COG:VC2379 KEGG:ns NR:ns ## COG: VC2379 COG0775 # Protein_GI_number: 15642376 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Vibrio cholerae # 62 210 45 198 231 109 41.0 5e-24 MFPSIVLLCAMSKERMAIHSAIEALAPAVKLVERTLVEEKPFASYRYTLRIEGHQTEWTF HLLETGIGKVHAALATQLAIVRYQPQLLVNVGVSGGLYAGAQVGDLCLSTAYRYHDVWCG EGNERGQVQGMPAQYSADATAMATVAKQLRIPLHEGLLLCGDTFIPEADHLRAFAQQYPD LVAVDMESAAIAQTAYLYHTPLVSLRIVSDTPLTSQDHSKQYASFWQQRASALAPFADAM RIICTLAGSL >gi|228308117|gb|ACLR01000120.1| GENE 46 47931 - 49097 1309 388 aa, chain + ## HITS:1 COG:no KEGG:Cpin_3942 NR:ns ## KEGG: Cpin_3942 # Name: not_defined # Def: hypothetical protein # Organism: C.pinensis # Pathway: not_defined # 22 388 27 383 383 332 46.0 2e-89 MNHLYRNLLLLCILSLGLLNSCREDDPVVPSDSEVIANSSQVSGGITGFYLLNEGNFQAN NSSLDYMNLVSGTYSRNIYATINPNVVKELGDTGNDLQIYGSRLYAVINSSNKVEVLDAQ SGKRIGQVDIPNCRYICFDSDNAYVSSYVSTSTRDAKGEVRGAVYRVNLNTLAITGQVVV GYQPEEMVVKGERLYVANSGGYMKPNYERTLSVIDLKSFTEVDKIEVGMNLHRLRMDHNG RLWVTSRGNYGNVPSNLYYIDLDPATQKVAKLDSLNMPCAQMAFYGDKLYYYSSVWDSEA NKMKIGFGLVDINAAKPLAESFITDGTDANIQTAYCLAIHPASGDIYITDAKDYVSSGTL YCFTPDGKLKWQINRTGMLPGHIAFVKK >gi|228308117|gb|ACLR01000120.1| GENE 47 49214 - 51238 2270 674 aa, chain + ## HITS:1 COG:no KEGG:PRU_2506 NR:ns ## KEGG: PRU_2506 # Name: not_defined # Def: outer membrane receptor (OMR) family transporter # Organism: P.ruminicola # Pathway: not_defined # 24 672 7 654 656 642 50.0 0 MATLILSLLLLCATTPQLCAQQPSPRDTVQTHLLETVVVRAPREPDYKRGIIPAQQLSGQ ELKALSAFSIADALRSFSGVQVKDFGGVGGLKTVNIRSMGTHHVGVFYDGVELSNAQNGQ IDLGQYSLDNMEAIQVFNGQKGSYLQPAKDFGSSGTVYLQTRKPTFTDGAQTNLRATLRT GSFDLFNPAILIEHRLEPRVSMSFNAEWIKSSGKYKFRYRKVLPLTHEIAYDTTAVRHNG DINATRLEGNLHIGLPDGQMLVKVYTYNSERGIPGAIVNNVWRRGERLWDNNSFVQTTYE QQLSDRIRLHAIAKYAYYQTHFVRNEPTAAFKVDNLYQQQELYSSVASAFQLIDHWYLSA AYDLQWNKLDANLYDFVYPHRFTHLLALASTYTNEWINAQVSLLGTLAQDKAKLLTRAPL FRKLTPAAILSVKPWEAIDLRLNAFYKQSFRLPTFNDLYYTEIGNVKLDPEHTTQYNVGL QYQLAPQKPWLHTLDFKVDAYYNLVTNKIIAYPKGQQFRWTMINLGKVDIRGIDAQCTWS LIPIRDLQLSLRAQYTYQRAIEVTDPKESYYRHQIPYIPWHSGSATAILQYKGWQLNYNF IYAGERYSQLENFPENHLQPWYTNDLALAYERTVRGYGLRLQFECNNLLSQAYDVVANYP MPLRNYRLTLIVSH >gi|228308117|gb|ACLR01000120.1| GENE 48 51719 - 52975 1261 418 aa, chain + ## HITS:1 COG:lin2873 KEGG:ns NR:ns ## COG: lin2873 COG0534 # Protein_GI_number: 16801933 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Listeria innocua # 3 407 34 438 450 124 25.0 3e-28 MAYNFTDMAWLGRLGSREVAAVGVIGVLLWIATSIAQLTKTSAEVCVSQSLGARNKPLAI KFARHCTTWALIVGTLLALVYLLFGSPIVGIYNLEADVHQMALRYLRIVLVGLPGYFLTL AMSGIYNAHGRSMTPFKINSLGLLFNMILDPLLIFVCHLGVIGAALATLLSQLAVCAILY YRMQHRDKILDGSSIVTKLAGEQSRRIFAIGVPVVLLNSLFALISIFMGRLASEQGGAIG VAVMTTGGQLEGVTWNACQGFCTALATFVGHNYAARQFDRVWRGYKTTILMTLSIGLFGT LLFLFLGRAFFALIVPDPETYIEGGRYLYIASFSQLFIMAEITTQGLFYGVGRSNTPAII SIVGNLLRIPLALLLIYLGWGLPAVWWAISLSSIGKGITAIIVLLTKRDKLAPTNLAA >gi|228308117|gb|ACLR01000120.1| GENE 49 52983 - 53900 1585 305 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470191|ref|ZP_04055098.1| ribosomal protein L11 methyltransferase [Porphyromonas uenonis 60-3] # 1 305 1 305 305 615 100 1e-175 MYHHYTFTTEQLGETEWAMPLLAQMLADWGFESFQEEPDKGLLQAYISDDAWRESREIDS QLATDAGALTLYDIAWHYRHELAPSSDWLAAWRSTTFEPISLRGRMLVTTPELAPTLPTH ELQLLIEAYNSFGSGEHHTTRMILEHLLDYDVTGAQVIDMGCGTGILGIAALLLGADSLV AIDISSECVTNTLHNLQLNGFAPTERISVLHGDAARLSAYPSKADLLFANIHRNIILQDL PSYVAAVRSGGEVWLSGFLLSDRTAICSGLASVGLEIIDEATSEEWLFVRTRKVRPKQSQ DKASE >gi|228308117|gb|ACLR01000120.1| GENE 50 54021 - 55994 2200 657 aa, chain + ## HITS:1 COG:MA1584 KEGG:ns NR:ns ## COG: MA1584 COG0187 # Protein_GI_number: 20090442 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Methanosarcina acetivorans str.C2A # 14 650 3 626 634 694 58.0 0 MSEQEKDIKTAPQDKGAYSASSIQVLEGLEAVRKRPAMYIGDISEKGLHHLVYEVVDNSI DEALAGYCTEVLVEILPDNSIQVTDNGRGIPVDMHAKEGKSALEVVMTVLHAGGKFDKGS YKVSGGLHGVGVSCVNALSESLIAEVHRDGKIYRQKYSRGKPLTGVEVVGEASDTGTRIT FKPDDTIFRETIYSSDTLSHRLRELSYLNAGLHLKLIDHRVHDEEGQPKSWTFYSEDGLS EFVRYVDGAKESLIHDVIHHTTEKQGVPVEVALTYNTSYQENVYTYVNDIHTIEGGTHLT GFRRGLTRTLKKYATDSHLLDKIKEEISGDDFREGLTAIVSVKVAEPQFEGQTKTKLGNS EIVSVVDAAVSEALEIYLEEHPLEAKLIVDKVILAAQARHAARRARELVQRKSPLTGGGL PGKLADCSSKDPSECELFIVEGDSAGGTAKQGRDSKYQAILPLRGKILNVEKAMQHRILD NAEIKNIYTALGVTVGTEEDSKALNLSKLRYHKIIIMTDADVDGAHIATLILTFFFRNMR PLIENGYVYIANPPLYLCKKDRIEEYCWTDDEKANFVTKYGNGQENRIKIQRYKGLGEMN DIQLWDTTMNPQTRTLRKVTIDNLASADSVFSMLMSEDVEPRREFIEENATYANIDA >gi|228308117|gb|ACLR01000120.1| GENE 51 56004 - 56849 1066 281 aa, chain + ## HITS:1 COG:no KEGG:Dshi_3292 NR:ns ## KEGG: Dshi_3292 # Name: not_defined # Def: hypothetical protein # Organism: D.shibae # Pathway: not_defined # 6 209 3 204 293 96 30.0 8e-19 METKRVAALTMVRNDDFYLRRWTAYYGRELGEEHLYIYLDGKDQPLPDWCPQATVVAVDK IQGQVVSAEKERLAFLSERAKELLTTGGYDLVIGVDADEILVVDPLVGMGLKEYLSQIQV GVSVSGLGVDVGQHLEKEDDIREDSPFLQQRHYARLSTRYTKPCVIAQPVVWGSGFHRIK GHNFTIDPQLYLFHFGYFDMKRIEARFADPDRREAGWTKHIAKRSKTIQQVTNHKARPWD STTRLARKLQTYIRPPYAWNKPAMLGLCLIVEIPERFHDTV >gi|228308117|gb|ACLR01000120.1| GENE 52 56873 - 57889 1130 338 aa, chain + ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 1 236 2 218 344 127 35.0 4e-29 MPKISVIIPVYNVEKYLRRCLDSVLAQTFTDWEAICVNDGSPDNSAQILAEYAERDPRFK IVTKANGGLSDARNAGMAVAKGTFINFLDSDDLIHPQTFEIAYALVEQEDADIVSWYKDP LFRPRLLVRHALGFNIDNTMPCGLKRRFSLDEVKYYTTDDIFAHVTEYSHTRIEYPIKHF YVWRHLLRRSLVQDVPFLKGVIFEDFPWWSEVILKNPRTVITDLPFYYYFPNIGSIDRSS SRTKKIKNWIQGLEHSYQLYEERATPYQKEHWQRECMWAMITYRIAHKLEQRVTEPEDRR ELAQALSRLNELGTFDNPFTIEGVKARQRILRFISKYQ >gi|228308117|gb|ACLR01000120.1| GENE 53 57911 - 59020 648 369 aa, chain + ## HITS:1 COG:SMb21250 KEGG:ns NR:ns ## COG: SMb21250 COG0438 # Protein_GI_number: 16264502 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 201 362 234 401 427 89 29.0 1e-17 MNIAFFNWYAIDLLFSGIEKVSHRVATALEERGHHLCYVCVDSWGKTALQKNTFILPNAS KIEAEENRIALRDFLRSHDVSVLVSHSAYSRRLAGMLREATYEAGAKLVQVLHTTPDSYH YRYWQCKVVNRAVRAFMNRKWGNSWSKIYSLSDAFVVLCQPSAEFITRIAHIQDPSKFAV IHNANTYLPTELAPAYDKEPIVLYVGRLVKGKGIEHIPTIWRQVSAQHPDWRLVVLGDGP YRATLEKAQLANCDILGTQEPKPYYERAAISILTSNAEGWSMVLTEAMQHGVVPVAFDSF LATGVVLDEGRAGVLVPPFDLNLFAQEVSSLIADSDRRTAMAEHARRYVQAFDIDHIIAD WERLFERLS >gi|228308117|gb|ACLR01000120.1| GENE 54 59076 - 61076 1803 666 aa, chain + ## HITS:1 COG:PA1689 KEGG:ns NR:ns ## COG: PA1689 COG1368 # Protein_GI_number: 15596886 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Pseudomonas aeruginosa # 276 562 315 594 700 96 32.0 1e-19 MIITKSRWIAIASHTLLAIVVMQLCRLLYFFYNQSFFPSVDGWQLLRLMQGGYILDMVAI AYGLLLYYLMMIVGAYLPRRVEMSRWYRWVRHVAYVLPLGVFIFLNVSDTGYYPFVLRRA NSDIFREFQGKSMFSFYKDFVVEFWPLTIAFLVLLALTIAGYWLVQYQRKERSSRRSYWV DASCTLGMVIFLFFSMRGSWDLYSKPVSTLHFFSYATDPEQFPLLQNTPVALTKDVATRQ LFTFYTDEELPTIFTPYYQAAPLSESDTLFGSMQGRNVVVIILESMAREYTGYLNRYIDG YPSYTPYLDSLMPHTLYAQYGFASGKRSVESFPSIFVSLPSFGGTFDDEAFTMDNYQHFD SYDTGLPLSLGDNGYHLKFYHGDEAGAMGFYSFLNRLGVQDQYTAQDYLAAHPDESSAKV GTWGIHDLPFEQAMAKDLKSLQEPFGAFFFSLSNHSPFSMPKGYKGHLKKGTLPIHQTAQ YADEALREFFERVKEEPWYRNTLFVITADHTSLSDQPLYANLAGHAAAPILFFDPQGKLQ GEVSDYVVQHIDILPTLLYLLGITEPVLSYGSNIFDQQAEHYALNFYHNQYLFFTKALTL TMTADGQVTVKAPAAYLQTEPSRATAPTSSAVKHYTALFKAIVQDYNNRVLKSSFSIRDV TPKSSD >gi|228308117|gb|ACLR01000120.1| GENE 55 61453 - 61665 157 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLSTALSRKSDNSSVELFDYPARKRKIHRNFEIFLPKFHFILPNFYFGPPWGIFICSVK ISDFLGRDCT >gi|228308117|gb|ACLR01000120.1| GENE 56 62193 - 64775 3626 860 aa, chain + ## HITS:1 COG:BH0007 KEGG:ns NR:ns ## COG: BH0007 COG0188 # Protein_GI_number: 15612570 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Bacillus halodurans # 2 816 3 804 833 797 49.0 0 MEDSIDRIIPVDIEDEMKTSYIDYSMSVIVSRALPDVRDGLKPVHRRVLYSMNESGNTYN NPTRKCARAVGDIMGKYHPHGDSSVYNTLVRLAQGWNMRYPLVQGQGNFGSIDGDSPAAM RYTESRLNQFAQEMLRDIDMETVDFQDNFDGDFKEPTVLPCRIPNLLINGAAGIAVGMAT NMAPHNLTETLNACIAYIDARGEITVDELMQYVKAPDFPTGGVIYGYEGVKEAFRTGRGR IVIRGKADIEEYHSHERIIIREIPYQVRKSDMVAKIAQLVNEKKIDGISDISDESSNKGI RIVIDIKKDANAGVVLNYLYKYSDLESYFSVNNIALVNGRPRQLNLKDLIGHFVDHRHDV VTRRAQYELRKAQERIHILEGLIIAVDHIDEVIRIIRSSEETREAMNRLMEAFNLSELQA RAIVDMRLRQLTKLDIDKLQHEYNELKERIDYLNLFLSDINMRMELIQEECREIIEKYGD ERRSEIVYASEDLNPEDFYADEDMVITISHLGYIKRTPLSEFRTQTRGGVGVKGADSRDE DFVEYIYSATMHATMMLFTATGRVYWLRVFEIPEGSKSSKGRHIQNLLDLDEENRITAFL RIKNLTTDADFVNTHYLVFATEQGLIKKTLLAHYANPRKTGVRAINLRDDDQVVSVALSN GNCEIFLANRNGRCVRFNEQEVRPMGRTATGVRGIRLDNDPNDKVVGMVVHRLKNSDETI LVISEKGYGKRSRIDDYRITKRGAKGVKTINVTDKTGQLIDIRAVEDDDNIMIINKSGVA IRLSMEQVRVMGRATQGVKMIDLNKRSDEIASICNVVAEEEEPELVDEADLDDPSEFVPQ EEDLNDFDDSPAQDEESSED >gi|228308117|gb|ACLR01000120.1| GENE 57 64840 - 66042 1904 400 aa, chain + ## HITS:1 COG:no KEGG:PG1385 NR:ns ## KEGG: PG1385 # Name: not_defined # Def: TPR domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 5 398 3 397 400 335 47.0 2e-90 MKTTRKVTLVLLVLMSALTLGCAQTSNVRGADRLSDASKPDYPGARALIQQALENPETKD DAKTWYTAGLIEERAFTGENQKSLKNEPQDLPSMYKALLDMHAYYTKTYEVDHQPNEKGK VRPKFEKKIANAYKDNLLYYINAGGYYMEQKDFKNALKAFQSFREIKRSPLFEGEKFAQT DSNSLMVDFFAIITAYQAGDKQLAIKYGEELKGSGYRQNEVYQILAQTYIEEGDTTNYIS TMREGLQLFPKEPYYSVNLINTYIVQNKYDEARTFLNQAIELNPENPQLYDVMGKLYEGS NEEEAIKWFTKALDIDPNYVESLCNIGRVYYNQAVALSDKEEGGAAVAQKKRNELLNKAL PYLEKAYSINPDASYYLLGNIYYALGNNAKYEEIQAAHGN >gi|228308117|gb|ACLR01000120.1| GENE 58 66206 - 67477 962 423 aa, chain + ## HITS:1 COG:no KEGG:PGN_0144 NR:ns ## KEGG: PGN_0144 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 51 422 50 415 419 147 31.0 9e-34 MNKLWTLCLLLLALASSLSGGEIFPHHIYTTEVQTLQCQVWRDGEPVAIPYPIARLASSD EEIVVSFDLADPVPHRIHYQLELCDADWQVNDRMALSEYLDGWIGARWQTDESTPSEATS VAYRHYELRLGGASVLQPLLSGNYRLTAWCEELQEEPIFVTSFALYEPLAEVAQQVVPTT PQGNYSRFQQVELELTFSPTLASDPLTELLVTVGQNGSSTRYQRLTRPTSLAPGRLTFRG HDGATFAAGNEWRAFEILSPYQANMGVEHLNSQETPPEAYLYLDRPTSGSYITVPDANGY RKVRQTDYDPYYDETMTDYYLVTWRLALDDPLRYGTPLIEGAAFDALPKEQRTLRYNRET GHFELSLLVKGGYVSYRYSTSPSPAPLASNAIEGDYYQTENQYTTLVYLISPMLRYQRLV AVK >gi|228308117|gb|ACLR01000120.1| GENE 59 67495 - 69006 1781 503 aa, chain + ## HITS:1 COG:no KEGG:PG1720 NR:ns ## KEGG: PG1720 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 502 7 508 509 608 57.0 1e-172 MDRKTATIYRLMYLRLKSIERYAKQSEAIQMRQFKRIMRVLRGTAYEQSLTSEPIRTYSD YQRIVPIVEYEELRPWVERMLQGERNQLIKGSCRWFATSSGTSGGRSKYLPVPGLHLQSC HYQGAKDALWLYLDTRPDSEFFAHKSLVIGGSHKPTAFAAGTHTGDLSAILVENMPALGE WHRVPSKQTLLMSEWTAKMRQIVQEVATADVGSLSGVPSWMLETIMAILEHTGRENLSEV WPHLEVFFHGGISFDPYRERYRQIIPSERMQYRETYNASEGFFGIQDDPTSSSMLLMQDY GILYEFIPMSQFDAPDRQAIPLADVQKGVNYALVISTLGGLYRYIIGDTVMFTELHPYKF IITGRTQSFINAFGEELMVHNTTTAISRVAQEMGVTVLDYTVAPRFCLDTANGYHEWIVE FETPPADPEHFIERIDQELRTLNSDYEAKRYANMALLMPRLVVARRGLFNDWLEEQGKLG GQHKIPRLRSNAELNDRLIELNK >gi|228308117|gb|ACLR01000120.1| GENE 60 69102 - 69404 325 100 aa, chain - ## HITS:1 COG:no KEGG:PGN_1429 NR:ns ## KEGG: PGN_1429 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 4 100 3 99 99 114 51.0 1e-24 MNRQKALFIVYNSALHGLVLRTLEQHNAKGYTEWSEVYGRGSATGEPHLGSHAWPTTNGA MMVITDAERAERILSALHQIDLDNPQQGLRAFAWEVTDMI >gi|228308117|gb|ACLR01000120.1| GENE 61 69408 - 72530 3477 1040 aa, chain - ## HITS:1 COG:AGl494 KEGG:ns NR:ns ## COG: AGl494 COG0841 # Protein_GI_number: 15890354 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 1030 1 1023 1048 482 32.0 1e-135 MSLYQSAVRRPVTTIMIFVGVVVLGLFALTRLPIDLLPDMQVNRIMIVTSYSGAAPEEVE NNVTKPIQNVLNGINGVKHITSQSKENVSVVTLELREGLDIESAINDTRDKISAITEALP DGAGTPNIIKFGMDDIPILMLSIKSDASSKSLYKILNDQLITPLGRIDGVGGVNLLGARQ RQINVYCDPHKLESYGITVGDVSNLIAVANRNVSAGSMNLETSKISLRAIGEIVDPKQLE ELPITSFGGQTIYLRDVASVVDGDPEQQTLSYVDNQRGAMLMLMKQSGANTVQVNKRVLK ALPQIVKNLPSDIKIEVVMDQSDFIVRSINSLSSTIAITFCVVMFIVLLFLGRWRATFII VLTIPISLLSAFIYLLLTGNSLNIISLSSLSIAIGMVVDDAIVVLENITNHIERGSYPKQ AAVHATNEVALSVIASTLTMLAVFLPMVMMQGMAGLLFRQLGWIVSIVMIVSTICALALT PTLCAHMLRANRQRQEGRVAQKILRPFNDFIQRLTLFYQRTLAWVLRHKWLTVGLSLAIF VLSLTLGSLVKTEFMPQGDSGYIFVKAYYPVGTTIDRPLAEGHRLTDEWRKKYPEIAMLQ FSTGQADAFQSGASTLAQDNADNILSFSIKLVEANQRTRSTQEVAAEIRRDLSATPGIKQ YNVSIQTGGGGQQSTVNVDIYGHDFAVTDQISKAFMAEIRKSPACAQALSNRDEFMPEYQ VLFDPQRLAEHGLTNSMVASYLRNSIYGATASFYREDGQEYEIRVRLAPEFRRSLDDVAQ TLVRTPQGTSVRLGELGKVEEHFAPPAIYQKDRSRVVTIALTPAPKAALSDLVRTAQKTL DGMDMPEGVSYEITGAFEQQQEAFADLGTLLLLIVFLVFIVMAAEFESLASPFVIMFSVP FAFTGVILGLLLTGVPLSIIAFIGAIMLVGIVVKNGIVLIDYTILNRERGMSVRTALLHA GASRLRPVLMTTLTTVFGMIPMAIGIGEGSEMWQPMGVTVAFGLTISTLVTLLLIPCIYA LVSRRQIRRRRKKSLKNNHL >gi|228308117|gb|ACLR01000120.1| GENE 62 72564 - 73616 1038 350 aa, chain - ## HITS:1 COG:VC0913 KEGG:ns NR:ns ## COG: VC0913 COG0845 # Protein_GI_number: 15640929 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Vibrio cholerae # 66 343 54 337 352 95 25.0 1e-19 MFLSIRTVAPIALSLALLSLTSCHSASKDGKTSFSHTIDSTDIKHVEVATVSVQTLPDLQ EYTSTVEAKVTNQIAPQMASRIKRIYVEVGQQVSRGQLLAEMDHSQLEQARLQVEERKSA LARIDELYKIGGISQSEWEATRRALTLAQTSYNNIKENTQLRSPISGVVTARNYDAGDMM SPQMPLLVVERVNPVVLRVNPSERYYGQMTKGMPVTITSESLPDETFAGKISLKYPTINP QTHTFTMEIEATNPERKLVPGQYARISINLGDKEYTVVPTESIVKQIGSAEQCVYIVRDG IAHRQVVLVERTIGKYTAISEGVSPGDVVVTTGASILSDQMPVQVSQAQQ >gi|228308117|gb|ACLR01000120.1| GENE 63 73652 - 75175 1929 507 aa, chain - ## HITS:1 COG:VC2436 KEGG:ns NR:ns ## COG: VC2436 COG1538 # Protein_GI_number: 15642433 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Vibrio cholerae # 71 480 34 419 438 85 22.0 3e-16 MGIPARTDSGVSAVKRGSLYTYYYMRQQKHLISGWRYVMLPCLLLLTLTLSAQQPDTLVL TLDQSITLGLEQSPMVLGKDVALVNQMYAEREAQSALYPQLSLSGNYGYTLKKQRIYFDG MPGMGAMPGMENGIEVGRTHNIQLGLQAGMPLVNATLWQALQINRTQVDLALQQASQSRQ ELVGQIKKAFYTVLLAQESCETLQQSMRNAELNLERVTQRYEAGLVAEYDKMRAEVQYAN IKPSVLQAEQGVDLAYMQLAVLLGLDPHTGLRLVGHLQDYQAESQQLIAQVPTTDSLWLT TNPTLRALELQQQIADESIKLSKLSWVPSISLGANYNYNFSSNDFDLSKSRLWVPFSVVS LQFQFPLFTGLKNYYTTRQAKGRALLLKLQRQDAERSLTLGMQHQRDQARKAQEQYNTAT QIQATAERGYTIAQRMYDKGMGTLLEVNDAELALLQARLNQTQALYDYLIAGVEIEQLIA PETPLSADPRSDYEERLNSIKRMTRYF >gi|228308117|gb|ACLR01000120.1| GENE 64 75309 - 75767 385 152 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470230|ref|ZP_04055137.1| ## NR: gi|228470230|ref|ZP_04055137.1| putative ferric uptake regulation protein [Porphyromonas uenonis 60-3] # 1 152 1 152 152 285 100.0 5e-76 MPRLSDSLKAKERLLLQTYLKAQGMNRSRVREAILDLIGEQMGIFSSEDLIALARERQMA IGESSIYGCIDLFVKIGILLPLPMGLAGSLVRKSLCHGKALLLCRHCGSALLHRSAAALT ELQTVTPPRFSDVTPLLLYWGVCPQCYRLGRR >gi|228308117|gb|ACLR01000120.1| GENE 65 75782 - 77071 1569 429 aa, chain - ## HITS:1 COG:XF0392 KEGG:ns NR:ns ## COG: XF0392 COG0192 # Protein_GI_number: 15836994 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Xylella fastidiosa 9a5c # 2 429 3 402 403 410 51.0 1e-114 MNYFFTSESVSEGHPDKVADQVSDAIVDQLLAGDPNSRVACETLVTTGQVIVSGEVRSNA YVDLDATVRRVVDRIGYNKPEYGFDARSCGILSAIHDQSNDINRGVDRGNPEEQGAGDQG MMFGYATTETANYMPLPLDLSNALLFELAEIRKKEPELMPYLRPDAKSQVTVEYDENNHP VRIDTIVLSTQHDEFIKPTDDSYEAQHAADLKMQEQITADIRRYLLPRVEKYYPQYADLF AVQEYRLLVNPTGKFVIGGPHGDTGLTGRKIIVDTYGGRASHGGGAFSGKDSSKVDRSGA YAARHIAKNMVAAGICSEMLVQLSYAIGVAEPVSIYVHTSGKKINMSDGEIAQRVLRIFD LRPYAIERRFDLRKPIYEETAAYGHFGRDVRRVKKSFETFHRGTIEIEVELFPWEKLDYV ERIQQEFGL >gi|228308117|gb|ACLR01000120.1| GENE 66 77947 - 79617 2056 556 aa, chain - ## HITS:1 COG:SP1229 KEGG:ns NR:ns ## COG: SP1229 COG2759 # Protein_GI_number: 15901091 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 555 1 555 556 545 51.0 1e-154 MKSDIQIARECQLKPIEEIAHQLHITDSELEPYGHYIGKVALERIDPDKVAQSNLILVTA ITPTKAGVGKTTVSIGLALGLNKIGKSAAVALREPSLGPCFGMKGGAAGGGYAQVLPMEN INLHFTGDFHAITSAHNMITALLDNYIYQNRNSCEGLSEVLWKRVLDVNDRSLRNCITGL GGVGNGVPTETGFDITPASEIMAILCLASDLDDLRRRIDNILLGYTKTKEPFRVKDLGIG GAITILLKDAIKPNLVQTTEGTPAFIHGGPFANIAHGCNSILATKMAMSCCDYTITEAGF GADLGAEKFLDIKCQVAGIAPKLTVIVATLAGLKMHGDVHEKQIYEKDIEGVRKGLANLD RHVHNLHNFGQTVVVAFNRYATDTDEEIEIVRNHCEQVLGCGFAINNAYSEGGKGATELA KLVVKMIKEHPSEPIDHVYQLSEPVKTKVEHIAKRIYGAANVTYSSKAEKKLARIQELNM ERYPICIAKTQYSFSADPKGYGDMRDFDMKVEDIVLNSGAEMIVVIMGSIMRMPGLPKEP QAVHMDIIDGQIEGLS >gi|228308117|gb|ACLR01000120.1| GENE 67 80440 - 82839 3183 799 aa, chain + ## HITS:1 COG:CAC1209 KEGG:ns NR:ns ## COG: CAC1209 COG1328 # Protein_GI_number: 15894492 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Clostridium acetobutylicum # 5 798 2 689 699 412 36.0 1e-114 MTTTIKQIIKRDGLQEPFTPSKIENAVLKAYIATGQTECLQEAKTVTMGVLGRIEQEVIS VEEVQDLVESELMKVQPEVAKRYILYREWRNTERQKKSELKRNLDGIVTIDSNDVNLSNA NMSSHTPAGQMMTFASEVSKDYTYRYLLPTQYAEAHRRGDIHIHDLDYYPTKTTTCIQYD LADLYERGFHTKNGSIRTPQSIQSYATLATIVFQTNQNEQHGGQAIPAFDFFMAPGVYKT FLKHIADTARLFLHCQGATDLPSVQEIRELAGQHLDSIVPTSTAVTNLCQALSQRVNKEI PRKELVYLINQAIERTRRDTHQAMEGFIHNLNTMHSRGGNQVVFSSINYGTDTSAEGRMV IEELMKATTEGLGVGGEVPVFPIQIFKVKDGVNYSEADFDRAMKDFDRAVAGEIEFETPN FDLFLKACETTAKALFPNFVFLDTPFNHSDEWDANDPLRYRHEIATMGCRTRVFENINGP RTSIGRGNLSFTTINLPRLAIEAMRYAKEQMGTKEDIGKMRSIAINKLYASIREMAQLVG EQLHTRYEFQATALARQFPFMMGNDVWKGGGALRPNDPVGHVIDSGTLGIGFIGGHNAMC AIYGEGHGTNEDAWHTLYHCVEIIGEVAQEFKERYHLNYSVLATPAEGLSGRFTRLDRKR YGVIEGVNDRAYYVNSFHIDVKEEIHIADKIRLEAPFHALTLGGHITYIELDGEAKKNVK AIAKIVKLMQDNHIGYGSINHPIDTCRECHYKGVIYAKCPICGGEDILRMRRITGYLTGD LSSWNSAKRAEEADRVKHH >gi|228308117|gb|ACLR01000120.1| GENE 68 82869 - 83339 487 156 aa, chain + ## HITS:1 COG:lin0306 KEGG:ns NR:ns ## COG: lin0306 COG0602 # Protein_GI_number: 16799383 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Listeria innocua # 12 154 28 172 183 137 45.0 1e-32 MNVLKVIPETILDGDGIRCSIYLAGCSHHCPGCHNPESHSPLVGTPLTEEYLQQIIDEIN DNPLLDGITLSGGDPMFSPGELLTLLKRLKHDTGLEIWCYTGYTLEQIEQDPTRAPLLDY IDVLVDGRFVQSLYDPQLPFRGSSNQRIIALHKARR >gi|228308117|gb|ACLR01000120.1| GENE 69 83549 - 83743 160 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLRKKEIKVPKNFPVPPWRLTVSSIANSDSLGSCANRMRSDRRQERQKAPPQDVSKNFP ASEK >gi|228308117|gb|ACLR01000120.1| GENE 70 83610 - 83924 66 104 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIWMSVKSLGSYEPCKGTQKSLPHHHFPKIYCRLAVRSSRGPFVFQRWKANFPPLENPWK LTFPRLESFWKHLEAEPSGAPAADQIACDSRNSRGNLNWLWRKR >gi|228308117|gb|ACLR01000120.1| GENE 71 83944 - 84537 993 197 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470184|ref|ZP_04055091.1| ribosomal protein S16 [Porphyromonas uenonis 60-3] # 1 197 1 197 197 387 100 1e-106 MATKIRLQRFGRRGYPFYRIVIADSRAPRDGKFIERIGSYNPNTNPATIDLKFDRALYWL KVGAQPSDTARRILSREGVLLKKHLDGGVAKGAFTQEVADQRFEAWHTNKQQLLKGVAER DQQKAQDIAQKQHEAEEEQNKERSKALEEKKAAIEREKAEAEAAAKAEAEAAEEANATEE APAAEEAPATEEAPAAE >gi|228308117|gb|ACLR01000120.1| GENE 72 84696 - 85940 1367 414 aa, chain + ## HITS:1 COG:BH2405 KEGG:ns NR:ns ## COG: BH2405 COG0612 # Protein_GI_number: 15614968 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 10 412 6 401 413 181 28.0 3e-45 MTSPQLQYYTTTQGLRIVYYPIPSQVTYIGYMVQTGSAQDPQPYHGLAHCTEHMLFKGTH RRHALHLVNRVEAVGADLNAFTTKEDTTLHISIPSRYALRAVHLLTDIVLNSYIPAEELS KEQEVIIEEIASYLDAPSERIYDEFEELLFGGTPLAHNILGSEQSVRRISSSVVRRFMDQ YYRPDNMVLGIWGEVDFAKAVEMIEHLYSEPRVTAGDPFKVPKVKPATTPERLIAKTHHY RTNQCHCIIGTHAPSLHDRERYAMTLFNNFVGGPAISSQLNLHLREELGLVYSVEASYTP YLSDGVWNVYLGTGSDTLQQAVEAVHSILDRYVTSPMSAEQLAISKQQIVGQLLLANDQH DSELITMLKSYLYFGRVSSVAEVAERIQSITPEEVTETVGRYLTRAQRHTLIYR >gi|228308117|gb|ACLR01000120.1| GENE 73 86072 - 86821 775 249 aa, chain + ## HITS:1 COG:TM1693 KEGG:ns NR:ns ## COG: TM1693 COG0204 # Protein_GI_number: 15644441 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Thermotoga maritima # 62 248 64 244 247 95 31.0 7e-20 MLLRILYIIYIVLFAAPIYAVLTIILAVIMTVGCLLGFGKFFSYYPGLIWSWLGLILSLC PVTVRGRKNYDKKAGPYVVMANHQGAYDIFLLYGFLGIPFKWVMKESLRRVPFVGKACAV AGFIFVNGHSIQNIRNSLDEAKRSLGDGYSIFIFPEGSRTRTGRMQPFKKGGFVIADELD IPIIPVSISGSYGVMRAGSLLPHWRRLYLDIHPPVHPREFHTSDQPMQDLREEVYHTIQQ GIHDGTERL >gi|228308117|gb|ACLR01000120.1| GENE 74 86802 - 87311 428 169 aa, chain + ## HITS:1 COG:alr5068 KEGG:ns NR:ns ## COG: alr5068 COG0394 # Protein_GI_number: 17232560 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Nostoc sp. PCC 7120 # 11 166 2 157 161 137 46.0 9e-33 MAQSDSSTTAPYRILFVCLGNICRSPLAEAIMRQLLAEDPVASSRIEVDSAGIGGWHQGE LADPRMRAHAARRRIEMTHRARQVTDRDFDTFDLIIAMDDGNYEALRELAPTLEQQAKVV RMADYLEQMPWDHIPDPYYGGASGFELVLDLLTEACTRLYQRCKAQSDK >gi|228308117|gb|ACLR01000120.1| GENE 75 87381 - 89141 1256 586 aa, chain + ## HITS:1 COG:jhp1312 KEGG:ns NR:ns ## COG: jhp1312 COG2194 # Protein_GI_number: 15612377 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Helicobacter pylori J99 # 245 569 226 542 553 159 30.0 2e-38 MFPKIKRLLSICGDYLKQLWGRMCSMPSLFAFLTLLQVLMGSLMILHLRMEMPLLLWLGG YIAGTAILMTLPAILPQRWWRITWTSLIVLLSAVLFIYEYYLLTEHGTLLTQTVLLQYYM PADEVCRSLLPWSMPMHTLLEAIGLLCGISLVTWSTRKGWGVLFMLLLVLISGVPHAMQI SPIVVEGISNDEAYTLAHEYNMMSRYIGTTLGVFANQKRYDDMAQNLWKNVPTNVRLMPQ RKPHNVVVIIGESLRRLDMHCYGYPLENTPHLDSLVRSGSLTLYDDVVCPQPNTITSLRR VLTIRGEDEQAPWDATTTLPIAFSSAGYKTYWCSNQEMAGDWIEEVSLIASTADSSYYTE GSTSSSFHWKAGRVKYDELLLPHLTDYRQTTSPSGHLLVMTHLMGNHADFTDRYPHDRFG RFTAEDLQRLEPHLSSGEAQNSAEYMNSILYNDYIVSEIIKYYSHSSSIVIYLSDHGLAR YDNPEAPHQAAHSVSERSLQIPFMVYMSDQFVAENPDVLLAVQRARYKPFMTDLFTSSLM GLMGIQSNYTIPRLQLWSLQYDATRPRRIQGFGTEVTFTPKHPDQL >gi|228308117|gb|ACLR01000120.1| GENE 76 89138 - 90805 1298 555 aa, chain + ## HITS:1 COG:PA4517 KEGG:ns NR:ns ## COG: PA4517 COG2194 # Protein_GI_number: 15599713 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Pseudomonas aeruginosa # 55 555 51 534 600 79 23.0 2e-14 MKKALFNYLQGVKARTPQLVWLLIAMLAILTLNNLVLRSLLSKSAPYLSRENLPLIWDTL WMATLLYVIPILIPHRITRRVVLITELVLVSAVHIMDLYLVSTYQMPYCDAIATPIFATN SSEAHGFFKSLRLDMPFMLREWGKLLLAIFLPLGISWLITLAKDAKKGLLHKRITRFQKY SSTILFIVVLVGAHILGIGYLRKTRVVARDGAIQYSLHAPIARLYLSSRMLCQNAKHCAL DYRPQQATPQEVTVDSLLPPHNVVLVVAEDIYPHLMHCYNPIVSDNTPTIDSLLQAGPLI KLDSVYSASDNAALAAAWTLSLCPKDSPNSWDTYPSIYSIFRVAGYDSYWLDNTPRIAHG LDVYPPLAADCDDLFFTNLRADDQEWTNIIPYDDAVLNRLKPLKDQSRLTTIHLMGARSN IWWRIPEEFYRYNRLSANTDINLSGDALDHLAQYYNVVYYQDDLLKRLIAYYQDTPTILI FCSPVGVYGEWHPYSGDQVTPETRGQVPMLLYLSPAMQRISPTLRNQLLQLNTKRHNLSD LPQLLMRLSGIKVSL >gi|228308117|gb|ACLR01000120.1| GENE 77 90884 - 91249 397 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 09:31:05 2011 Seq name: gi|228308110|gb|ACLR01000121.1| Porphyromonas uenonis 60-3 deg1118640599692, whole genome shotgun sequence Length of sequence - 611 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 165 - 609 404 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228308110|gb|ACLR01000121.1| GENE 1 165 - 609 404 148 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 40 148 123 232 294 85 40.0 2e-17 MLLRSRKRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSL TMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMT DYEASLGIVTSVTQTGNPLHNAMAERLN Prediction of potential genes in microbial genomes Time: Fri May 27 09:31:06 2011 Seq name: gi|228308106|gb|ACLR01000122.1| Porphyromonas uenonis 60-3 deg1118640599650, whole genome shotgun sequence Length of sequence - 1185 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 301 140 ## PG1435 integrase Predicted protein(s) >gi|228308106|gb|ACLR01000122.1| GENE 1 1 - 301 140 100 aa, chain - ## HITS:1 COG:no KEGG:PG1435 NR:ns ## KEGG: PG1435 # Name: not_defined # Def: integrase # Organism: P.gingivalis # Pathway: not_defined # 14 100 209 295 408 87 44.0 1e-16 MERAVEEDLLMRVPFPKVVLRMQPTDRGFLDDSDLERLRSVELSNPKLLLVRDAFLFSCY TGLSYADISRLVRDNIISMHGQSWVVLRRKKTGVLSTIPL Prediction of potential genes in microbial genomes Time: Fri May 27 09:31:51 2011 Seq name: gi|228307988|gb|ACLR01000123.1| Porphyromonas uenonis 60-3 ctg1118640599661, whole genome shotgun sequence Length of sequence - 137693 bp Number of predicted genes - 114, with homology - 110 Number of transcription units - 38, operones - 28 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 303 - 362 3.0 1 1 Op 1 10/0.000 + CDS 447 - 1613 1423 ## COG3288 NAD/NADP transhydrogenase alpha subunit + Term 1662 - 1709 5.6 + Prom 1624 - 1683 1.7 2 1 Op 2 17/0.000 + CDS 1761 - 2069 483 ## COG3288 NAD/NADP transhydrogenase alpha subunit 3 1 Op 3 . + CDS 2066 - 4609 3126 ## COG1282 NAD/NADP transhydrogenase beta subunit + Term 4650 - 4700 12.2 + Prom 4691 - 4750 2.1 4 2 Op 1 . + CDS 4829 - 5611 813 ## Phep_3216 oxidoreductase domain protein 5 2 Op 2 . + CDS 5608 - 6189 574 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation + Prom 6279 - 6338 2.2 6 3 Op 1 8/0.000 + CDS 6459 - 6818 187 ## COG0451 Nucleoside-diphosphate-sugar epimerases 7 3 Op 2 8/0.000 + CDS 6855 - 8177 687 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 8 3 Op 3 . + CDS 8209 - 9285 458 ## COG0451 Nucleoside-diphosphate-sugar epimerases 9 3 Op 4 . + CDS 9323 - 10366 670 ## Cpin_1082 hypothetical protein 10 3 Op 5 . + CDS 10363 - 11259 620 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family 11 3 Op 6 . + CDS 11307 - 12554 783 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid + Prom 12561 - 12620 6.9 12 4 Op 1 . + CDS 12833 - 13279 533 ## PGN_0872 DNA-binding protein histone-like family + Term 13297 - 13332 7.4 13 4 Op 2 . + CDS 13347 - 13919 435 ## COG1045 Serine acetyltransferase 14 4 Op 3 . + CDS 13977 - 15188 479 ## ABO_0923 hypothetical protein 15 4 Op 4 25/0.000 + CDS 15209 - 16312 252 ## COG0438 Glycosyltransferase 16 4 Op 5 12/0.000 + CDS 16316 - 17473 669 ## COG0438 Glycosyltransferase 17 4 Op 6 3/0.000 + CDS 17557 - 18162 299 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 18 4 Op 7 . + CDS 18170 - 18817 351 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Prom 18928 - 18987 1.8 19 5 Op 1 . + CDS 19185 - 19571 197 ## gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 20 5 Op 2 . + CDS 19640 - 20785 1511 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 21 6 Op 1 10/0.000 + CDS 20905 - 21975 611 ## COG1169 Isochorismate synthase 22 6 Op 2 1/0.000 + CDS 22001 - 23719 941 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 23 6 Op 3 . + CDS 23716 - 24546 1087 ## COG0447 Dihydroxynaphthoic acid synthase 24 6 Op 4 4/0.000 + CDS 24553 - 25659 787 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 25 6 Op 5 . + CDS 25690 - 26778 713 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Term 26802 - 26854 16.1 - Term 26793 - 26838 7.5 26 7 Op 1 . - CDS 26876 - 28519 463 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase 27 7 Op 2 . - CDS 28695 - 29975 1891 ## COG0112 Glycine/serine hydroxymethyltransferase - Prom 30137 - 30196 3.5 + Prom 30096 - 30155 3.9 28 8 Op 1 . + CDS 30185 - 31276 1441 ## PG0082 hypothetical protein 29 8 Op 2 . + CDS 31289 - 32047 1006 ## PG0083 hypothetical protein + Term 32080 - 32134 10.1 - Term 32067 - 32121 13.1 30 9 Op 1 . - CDS 32144 - 32362 88 ## 31 9 Op 2 . - CDS 32447 - 33151 510 ## gi|228470269|ref|ZP_04055173.1| hypothetical protein PORUE0001_0630 - Prom 33216 - 33275 2.4 + Prom 33151 - 33210 4.1 32 10 Op 1 . + CDS 33354 - 34946 1704 ## BVU_2944 putative transmembrane protein 33 10 Op 2 . + CDS 34951 - 36060 1019 ## Dfer_0060 hypothetical protein + Term 36068 - 36112 1.3 + Prom 36096 - 36155 4.5 34 11 Op 1 7/0.000 + CDS 36225 - 37073 657 ## COG1596 Periplasmic protein involved in polysaccharide export 35 11 Op 2 . + CDS 37121 - 38821 1798 ## COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis 36 11 Op 3 3/0.000 + CDS 38872 - 39606 676 ## COG0489 ATPases involved in chromosome partitioning 37 11 Op 4 1/0.000 + CDS 39643 - 40389 472 ## COG4464 Capsular polysaccharide biosynthesis protein 38 11 Op 5 . + CDS 40428 - 42455 2417 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases + Term 42515 - 42550 -0.9 39 12 Op 1 . - CDS 42498 - 43034 480 ## COG0703 Shikimate kinase 40 12 Op 2 . - CDS 43031 - 45082 547 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 - Term 45583 - 45632 13.7 41 13 Op 1 38/0.000 - CDS 45690 - 46514 411 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts 42 13 Op 2 . - CDS 46526 - 47419 1508 ## PROTEIN SUPPORTED gi|228470250|ref|ZP_04055154.1| ribosomal protein S2 - Prom 47508 - 47567 2.0 43 14 Op 1 59/0.000 - CDS 47644 - 48030 631 ## PROTEIN SUPPORTED gi|228470310|ref|ZP_04055214.1| ribosomal protein S9 44 14 Op 2 . - CDS 48045 - 48500 798 ## PROTEIN SUPPORTED gi|228470335|ref|ZP_04055239.1| ribosomal protein L13 - Prom 48728 - 48787 2.8 - Term 48789 - 48848 4.2 45 15 Tu 1 . - CDS 48892 - 51621 3474 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase - TRNA 52026 - 52102 74.4 # His GTG 0 0 - Term 52101 - 52139 2.0 46 16 Tu 1 . - CDS 52237 - 54549 2924 ## BDI_1105 putative outer membrane receptor protein involved in Fe transport - Prom 54575 - 54634 4.7 47 17 Tu 1 . - CDS 54693 - 54887 160 ## + Prom 54892 - 54951 2.0 48 18 Op 1 . + CDS 55050 - 56267 1567 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 49 18 Op 2 . + CDS 56293 - 56775 585 ## BDI_0193 hypothetical protein 50 18 Op 3 . + CDS 56775 - 57494 666 ## PGN_0259 hypothetical protein 51 18 Op 4 . + CDS 57519 - 57914 592 ## BF1084 preprotein translocase subunit SecG + Prom 57986 - 58045 2.2 52 19 Op 1 . + CDS 58093 - 59367 1538 ## COG0172 Seryl-tRNA synthetase 53 19 Op 2 . + CDS 59394 - 59864 738 ## COG0691 tmRNA-binding protein 54 19 Op 3 . + CDS 59955 - 60554 266 ## gi|228470256|ref|ZP_04055160.1| hypothetical protein PORUE0001_0655 + Term 60791 - 60848 7.4 - Term 60778 - 60836 18.0 55 20 Op 1 9/0.000 - CDS 60875 - 61807 1329 ## COG0379 Quinolinate synthase 56 20 Op 2 13/0.000 - CDS 61854 - 62711 510 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 57 20 Op 3 . - CDS 62724 - 64343 1414 ## COG0029 Aspartate oxidase - Prom 64511 - 64570 4.1 58 21 Tu 1 . - CDS 64740 - 65786 1353 ## BF2104 hypothetical protein 59 22 Op 1 . + CDS 66145 - 66804 762 ## gi|228470266|ref|ZP_04055170.1| hypothetical protein PORUE0001_0660 60 22 Op 2 . + CDS 66827 - 67690 356 ## COG0863 DNA modification methylase 61 22 Op 3 . + CDS 67687 - 68799 552 ## BF3419 hypothetical protein 62 22 Op 4 . + CDS 68867 - 70078 177 ## PROTEIN SUPPORTED gi|163755828|ref|ZP_02162946.1| 30S ribosomal protein S21 + TRNA 70348 - 70430 60.8 # Tyr GTA 0 0 + TRNA 70442 - 70516 79.9 # Thr GGT 0 0 + Prom 70350 - 70409 80.3 63 23 Tu 1 . + CDS 70618 - 71805 1393 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + TRNA 72074 - 72149 78.8 # Trp CCA 0 0 + Prom 72075 - 72134 78.5 64 24 Op 1 . + CDS 72166 - 72366 223 ## PGN_1577 putative preprotein translocase SecE subunit + Prom 72489 - 72548 4.8 65 24 Op 2 45/0.000 + CDS 72570 - 73133 565 ## COG0250 Transcription antiterminator + Term 73277 - 73319 -0.9 66 24 Op 3 55/0.000 + CDS 73331 - 73774 744 ## PROTEIN SUPPORTED gi|228470331|ref|ZP_04055235.1| ribosomal protein L11 67 24 Op 4 43/0.000 + CDS 73790 - 74494 1167 ## PROTEIN SUPPORTED gi|228470281|ref|ZP_04055185.1| ribosomal protein L1 68 24 Op 5 47/0.000 + CDS 74523 - 75053 868 ## PROTEIN SUPPORTED gi|228470291|ref|ZP_04055195.1| ribosomal protein L10 69 24 Op 6 28/0.000 + CDS 75104 - 75478 584 ## PROTEIN SUPPORTED gi|228470276|ref|ZP_04055180.1| ribosomal protein L7/L12 + Term 75513 - 75569 13.3 70 25 Op 1 58/0.000 + CDS 75816 - 79658 2445 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 71 25 Op 2 . + CDS 79702 - 84051 5309 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 84149 - 84208 10.4 - Term 84330 - 84383 1.2 72 26 Tu 1 . - CDS 84467 - 85876 1245 ## Cpin_4911 spore coat protein CotH - Prom 85982 - 86041 3.0 73 27 Tu 1 . - CDS 86058 - 86291 180 ## - Prom 86526 - 86585 4.6 + Prom 86344 - 86403 2.5 74 28 Op 1 . + CDS 86558 - 87703 1388 ## COG3291 FOG: PKD repeat 75 28 Op 2 . + CDS 87747 - 89672 2242 ## gi|228470345|ref|ZP_04055249.1| hypothetical protein PORUE0001_0680 76 28 Op 3 . + CDS 89711 - 91411 1648 ## gi|228470356|ref|ZP_04055260.1| hypothetical protein PORUE0001_0681 + Term 91426 - 91483 8.1 + TRNA 92046 - 92120 48.7 # Gln TTG 0 0 + TRNA 92260 - 92333 53.1 # Gln CTG 0 0 + TRNA 92388 - 92465 90.9 # Val TAC 0 0 77 29 Op 1 . + CDS 92745 - 94244 1640 ## COG4624 Iron only hydrogenase large subunit, C-terminal domain 78 29 Op 2 . + CDS 94219 - 95268 761 ## COG0502 Biotin synthase and related enzymes 79 29 Op 3 . + CDS 95281 - 96699 1370 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 80 29 Op 4 . + CDS 96714 - 97910 862 ## COG1160 Predicted GTPases 81 29 Op 5 . + CDS 97975 - 98193 94 ## 82 29 Op 6 . + CDS 98227 - 99219 1247 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 83 29 Op 7 . + CDS 99216 - 99737 659 ## COG0778 Nitroreductase 84 29 Op 8 . + CDS 99753 - 100754 963 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 85 29 Op 9 . + CDS 100822 - 102453 1617 ## gi|228470354|ref|ZP_04055258.1| hypothetical protein PORUE0001_0693 86 29 Op 10 . + CDS 102490 - 103167 342 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 87 29 Op 11 . + CDS 103160 - 103543 574 ## BDI_3810 hypothetical protein + Term 103569 - 103626 18.7 - TRNA 103697 - 103773 78.0 # Asn GTT 0 0 - TRNA 103810 - 103886 78.0 # Asn GTT 0 0 + Prom 103979 - 104038 3.5 88 30 Op 1 . + CDS 104167 - 104688 460 ## COG0262 Dihydrofolate reductase 89 30 Op 2 . + CDS 104681 - 106060 1737 ## COG0124 Histidyl-tRNA synthetase 90 30 Op 3 . + CDS 106138 - 106728 861 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 91 30 Op 4 . + CDS 106744 - 107469 911 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 92 30 Op 5 . + CDS 107514 - 108371 1284 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 + Term 108437 - 108502 4.1 + Prom 108473 - 108532 2.5 93 31 Op 1 5/0.000 + CDS 108745 - 109953 1106 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 94 31 Op 2 5/0.000 + CDS 109959 - 110672 819 ## COG2830 Uncharacterized protein conserved in bacteria 95 31 Op 3 1/0.000 + CDS 110608 - 111486 723 ## COG0500 SAM-dependent methyltransferases 96 31 Op 4 . + CDS 111483 - 112514 1468 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 112596 - 112641 14.4 - Term 112873 - 112916 -0.3 97 32 Op 1 . - CDS 112968 - 113765 742 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 98 32 Op 2 . - CDS 113774 - 114829 1104 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 99 33 Tu 1 . - CDS 114996 - 115388 143 ## COG0607 Rhodanese-related sulfurtransferase - Prom 115421 - 115480 3.8 - Term 115499 - 115550 11.5 100 34 Tu 1 . - CDS 115590 - 117758 1781 ## COG1629 Outer membrane receptor proteins, mostly Fe transport + TRNA 118077 - 118149 76.8 # Thr TGT 0 0 + Prom 118074 - 118133 75.7 101 35 Tu 1 . + CDS 118265 - 119041 878 ## BVU_1221 hypothetical protein + Term 119102 - 119136 3.5 102 36 Op 1 . - CDS 119038 - 120666 1342 ## COG0438 Glycosyltransferase 103 36 Op 2 . - CDS 120659 - 121258 507 ## PGN_1645 putative dipeptidyl-peptidase III 104 36 Op 3 . - CDS 121251 - 122066 1432 ## COG0005 Purine nucleoside phosphorylase 105 36 Op 4 . - CDS 122099 - 123370 1204 ## COG0402 Cytosine deaminase and related metal-dependent hydrolases 106 36 Op 5 . - CDS 123377 - 124735 1689 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 124795 - 124854 3.3 - Term 125028 - 125078 11.0 107 37 Op 1 . - CDS 125102 - 125452 527 ## gi|228470352|ref|ZP_04055256.1| hypothetical protein PORUE0001_0718 108 37 Op 2 27/0.000 - CDS 125454 - 128594 3536 ## COG0841 Cation/multidrug efflux pump 109 37 Op 3 13/0.000 - CDS 128599 - 129678 1363 ## COG0845 Membrane-fusion protein 110 37 Op 4 . - CDS 129717 - 131126 1508 ## COG1538 Outer membrane protein 111 37 Op 5 9/0.000 - CDS 131155 - 131943 816 ## COG3279 Response regulator of the LytR/AlgR family 112 37 Op 6 . - CDS 131940 - 133067 1067 ## COG3275 Putative regulator of cell autolysis - Term 133126 - 133187 6.1 113 38 Op 1 . - CDS 133204 - 133908 797 ## gi|228470254|ref|ZP_04055158.1| conserved hypothetical protein 114 38 Op 2 . - CDS 134092 - 136680 2403 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases - Prom 136848 - 136907 4.0 - 5S_RRNA 137326 - 137402 93.0 # AE015924 [D:124845..124952] # 5S ribosomal RNA # Porphyromonas gingivalis W83 # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas. Predicted protein(s) >gi|228307988|gb|ACLR01000123.1| GENE 1 447 - 1613 1423 388 aa, chain + ## HITS:1 COG:all3410 KEGG:ns NR:ns ## COG: all3410 COG3288 # Protein_GI_number: 17230902 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase alpha subunit # Organism: Nostoc sp. PCC 7120 # 1 384 23 401 411 285 42.0 1e-76 MIIGVPKEIMHDEARVAASPEAVKQYVADGHTVLFERGAGEGAAYHDEDYQAAGAELIQG PEEIFRRAEIIIKVKEPLFNEQLGKHEIDMMHKGQYLITFIHPASPVNHDMVRKMAAQGV IGLTLDGVPRISRAQNLDALTSMSTCAGYKGILMAANDLSFFMPQMFTAVGKIDPAKVLV IGVGVAGLQALATARRLGCITYAADIRPAASEQATSLGAKPIDLGIPADKAVAPGGYALH LSPELLEHERKVLADHVKDMDVIFCSALVPGKIAPVVITEEMVKSMKPGSVIVDIAIDQG GNCAITTPGERDVKHHVVIEGIKNIPGMLPQSATWMFSQNMYNLVKYLVKDGKMHLDMSD QITSSIVVTTEAGEIIHEGTLEAMGLKK >gi|228307988|gb|ACLR01000123.1| GENE 2 1761 - 2069 483 102 aa, chain + ## HITS:1 COG:HI1362 KEGG:ns NR:ns ## COG: HI1362 COG3288 # Protein_GI_number: 16273272 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase alpha subunit # Organism: Haemophilus influenzae # 9 95 429 511 512 75 48.0 2e-14 MNPLILVAIFLVATFVGYKLISNVPSLLHTPLMSGMNALSGVTITGALAATATAIIAPDG SLFQQIFGVVAVILATINVVGGFGVTNRMLRMFTKNKKGGKA >gi|228307988|gb|ACLR01000123.1| GENE 3 2066 - 4609 3126 847 aa, chain + ## HITS:1 COG:NMA1175 KEGG:ns NR:ns ## COG: NMA1175 COG1282 # Protein_GI_number: 15794120 # Func_class: C Energy production and conversion # Function: NAD/NADP transhydrogenase beta subunit # Organism: Neisseria meningitidis Z2491 # 13 472 10 459 461 306 41.0 2e-82 MNTLIEISNPVYYVICGILSILVLAGIAMMSKVKSAARGNALSATAMGLGVIVTLLKLQV VTFPWLIAGILIGGIIGVILYTRVKMIQMPQMVALLNGIGGGASALVGALTLFQLEDNVH FTLVTAFLAIIIGMLTLVGSLVAAGKLHRVLPQKSVVWPFHNVATSLTLVVAVFFLLIGT INYQMPTALLYAMIGTMLFSALFGLYFSIRVGGADMPITISLLNSLSGVAGAIAGMAIGD IFLVAVGGVVGASGLLLTQIMCRAMNRSLINILIPHGKAKAPAKPATATTKAPAAPQPKQ ESSPIDQAVAMLRGAKRVIIVPGYGMALAQAQQEVKQLADKLARNGAEVKYAIHPVAGRM PGHMNVLLAEANVDYDSLYEMEAINDQFANTDAVIVIGANDVLNPAARNAEGTPIYGMPV LNVDQAKQVIICNFDLKPGYAGVENPLYSRGEGVALCLGDAKATIDQILSGLDSSAATAQ PASSSSASDPISQAAGMLRGAKRVIIVPGYGMALAQAQQEVKQLADKLARNGAEVKYAIH PVAGRMPGHMNVLLAEANVDYDSLYEMEAINDQFANTDAVIVIGANDVLNPAARNAEGTP IYGMPVLNVDQAKQVIICNYDLKPGYAGVENPLYSRGEGVALCLGDAKATLSNLMDRLDH AESAPAAPAASSATSTATPLQSATEVLHNAKRVIIVPGYGMALAQAQQEVKQLADKLARN GAEVKYAIHPVAGRMPGHMNVLLAEANVDYDSLYEMEAINDQFANTDAVIVIGANDVLNP AARNAEGTPIYGMPVLNVDQAKQVIICNYDLKPGYAGVENPLYSRSEGVTLLIGDAKKTL SDLIDTL >gi|228307988|gb|ACLR01000123.1| GENE 4 4829 - 5611 813 260 aa, chain + ## HITS:1 COG:no KEGG:Phep_3216 NR:ns ## KEGG: Phep_3216 # Name: not_defined # Def: oxidoreductase domain protein # Organism: P.heparinus # Pathway: not_defined # 1 254 1 248 252 149 37.0 6e-35 MKVVLIGSGGVATSIAAALASHASTSLCGIYSRQLAHAEALRKRFALTCPVTDSLRQLPL ADLYIIAVSDQAIAEVATALPPLDGLVVHTSAVTPIDCLSGQRTYGVWYPFNSFAKEVVV PFEGQKVLYQLASDEGLTTLQQWNELLQVEAIPSTLDQRLWLHLAGVLASNCTNRLYTLS HRLLTQAGLPTDLLHGLILRTASKATTIDPYVAQTGPARRHDLETIARHRALLEQLPESQ QEVSQLYNLFTEAILDDYPL >gi|228307988|gb|ACLR01000123.1| GENE 5 5608 - 6189 574 193 aa, chain + ## HITS:1 COG:TM1556 KEGG:ns NR:ns ## COG: TM1556 COG0424 # Protein_GI_number: 15644304 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Thermotoga maritima # 5 188 2 182 204 130 43.0 1e-30 MKTYRWILGSQSPRRKELLATLGHPFEIRTIEGHSEAYPDTLPLEEVPRYLSQLKAEQLR PTLQADELLITADTVVLLDGQILGKPHDLDDARRMLRLLSGRQHEVVSGVSLTTTEWQRS FASHTLVTFAQLTDSEIDHYVAHYQPLDKAGAYGIQEWIGYIGVSHIEGSFYNVMGLPVQ RLYRELQDAALLP >gi|228307988|gb|ACLR01000123.1| GENE 6 6459 - 6818 187 119 aa, chain + ## HITS:1 COG:SMb20458 KEGG:ns NR:ns ## COG: SMb20458 COG0451 # Protein_GI_number: 16264188 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Sinorhizobium meliloti # 59 119 3 71 348 60 46.0 8e-10 MKLRKKDFEVPKNFFVSPWIISDLHRGILRFPPVVPLRSSSSRCLSSMRIPLIAPKYVHL HSDVRMTSFGPHLYTNMKLLITGGAGFIGSNLCEHFLREGHTVRCLDNFATGKPANILP >gi|228307988|gb|ACLR01000123.1| GENE 7 6855 - 8177 687 440 aa, chain + ## HITS:1 COG:STM2080 KEGG:ns NR:ns ## COG: STM2080 COG1004 # Protein_GI_number: 16765410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Salmonella typhimurium LT2 # 7 440 1 388 388 466 55.0 1e-131 MKSIDDIKIAVAGTGYVGMSIATLLSQHHHVSAVDVIPEKVEKINNRISPLQDDYIEKFF AEENLHLDATLDGKTAYSDADFIVIATPTNYDPVKNSFDTSRVEEVIDLILEVNPRAIMV IKSTVPVGYTRSLYIKYAKKGVKSLNLLFCPEFLRESKALYDNLYPSRIIVGYPKLIKGL EYEEENRAIMSTCDVAMMKEAAEIFARLLQEGAIKKDIPTIYMGLKEAEAVKLFANTYLA LRVSFFNELDTYAELKGLDTLSIIEGVGLDPRIGSHYNNPSFGYGGYCLPKDTKQLLANY TDVPQNMMTAIVESNRTRKDFIANQILKKAGYYDYDGDAFDPEREKKCVVGVYRLTMKTG SDNFRHSSIQGVMKRIKAKGADIIIYEPTLEDGTTFFGSLVVNDLEEFKRKSSTIIANRY DSQLSDVYDKIYTRDLYHRD >gi|228307988|gb|ACLR01000123.1| GENE 8 8209 - 9285 458 358 aa, chain + ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 13 352 3 329 343 342 50.0 6e-94 MLDYNLELTSRTVLVTGVAGFIGGALAKRLLNDFVSIKIIGVDNLTSYYDIRLKKERLKD LIEYGDRFVFIEASIANKEVVEQLFAQYRPSVVVNLAAQAGVRYSISHPDTYIESNLIGF FNILEACRHSYDGLKSGVDHLIYASSSSVYGSNTKVPYSVDDKVDNPVSLYAATKKSNEL MAHAYSKLFNIPATGLRFFTVYGPCGRPDMAYFGFTETLLNDGTIQIFNYGNCKRDFTYI DDIVEGIIRIMRHAPERKVGEDGLPIPPYKVYNIGNNNPENLLDFVQTLQEELVKARALP RDYDFAAHTKLVPMQPGDVPITYADTTPLEEDFGFKPNTSLREGLRAFVQWYVKSHLE >gi|228307988|gb|ACLR01000123.1| GENE 9 9323 - 10366 670 347 aa, chain + ## HITS:1 COG:no KEGG:Cpin_1082 NR:ns ## KEGG: Cpin_1082 # Name: not_defined # Def: hypothetical protein # Organism: C.pinensis # Pathway: not_defined # 11 339 12 340 341 261 41.0 3e-68 MKIAIANCKGSYSDHWIEYCKEHNIAYKAINPYDTDIIEQVSDCDAFMWHHLHWHYRDVL FAKQLLFSLEQAGKVVFPNFRTGWHFDDKVGQKYLFEALGVQAAKSWVFYDKKSAYEWIE TTDFPKVFKLRGGAGSANVRLARSAKQARRFVRKAFGRGYPPSNPLFSAKTQWQNFLKGK GRLYDVAKYIALYLFPKLKGGHLLPRHKGYAYFQEFIPNEGFDYRLEIANNKAIAMVRMC REGDFRASGGHDDRYDASLIPQDVVEFAFECYDKLEVQSVALDIVREKESGELYLIEVSY CYGLDEDEFEHGYWTRDGEHHREPFNGVYWMMEEVIKAVSYSKEGTA >gi|228307988|gb|ACLR01000123.1| GENE 10 10363 - 11259 620 298 aa, chain + ## HITS:1 COG:CAC1054 KEGG:ns NR:ns ## COG: CAC1054 COG0010 # Protein_GI_number: 15894341 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Clostridium acetobutylicum # 5 298 4 296 299 194 36.0 1e-49 MKTFDVIGYPINLGCDKDGNELTPSILRRDGCYTSAKHHVNDLGDLPCTPRAAIIEEKFA SHPKIKYLKPILTASRPLAERVMHSIAQQHIPLCVGGDHVMAFGSIAGVGLTKGADNFAV IYIDAHGDFNTEITSGTGNMHGMHLSYLMGYGEADIANFWGVSPLLKPQNIYFLGARALD PGEIEMAAKLNMYIRSSEQLNASDPAEVIVDILSDIKRKGIDHIHLSFDVDVIDPEYAPG TGVPEKKGIPPALAYTLIRLCMQSDLVKSVDIVELNANLDQGRITERAMQQVLKIILE >gi|228307988|gb|ACLR01000123.1| GENE 11 11307 - 12554 783 415 aa, chain + ## HITS:1 COG:CAC3065 KEGG:ns NR:ns ## COG: CAC3065 COG2244 # Protein_GI_number: 15896316 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Clostridium acetobutylicum # 17 390 13 399 431 147 30.0 5e-35 MTPSRIKKALSEENKVVAGNFLFLFLLKGVDFLIPLLTLPYLLRVIGADGYGQIMFVLAL INYFLSFAYYGFSLTGTRFVAANKHSKHRLQYIYTVVNSTRAFLCLISSLLIVILVFTIP SFRAYATLYILFIPMIWGGALLADWMYQGIERMKFIALLNTGLRLIFLVAVFAFIHDKGD LWIYPLSLSLAYIVCAIISHYLLKRILGLKFRLCRLRHITRMLKEDFPIFVNQFVPTLYN NTSGFILGLLAPISTVGIYYAIRKIADIFVTLTDLFTRAIFPNIVRNHSRFRVYSRSMLV VGFVYCLAPILLARLVFLYLNMPLEGNVVILAILMLGVLGIVFYDVYGVNYLIAKGHDKA VMSNTLIASLICFVLAYPMIQYLGILGAAINLSFARVLMGGGVFLQYRRKKSLAR >gi|228307988|gb|ACLR01000123.1| GENE 12 12833 - 13279 533 148 aa, chain + ## HITS:1 COG:no KEGG:PGN_0872 NR:ns ## KEGG: PGN_0872 # Name: not_defined # Def: DNA-binding protein histone-like family # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 128 21 150 152 156 63.0 2e-37 MYYAQADKTRVIPFEEVIKDIAEMSSLTTGDVRNAIDRLAYYLKRELAEGNTVQLGQIGT FRMNTASKFVETPEEVNASILKESKVQFGLSFHLKEAKDSLRVAVFNPYTQKKLGNAGTD PNAGGGTTDPNAGGGSNPGTNEEDNIGI >gi|228307988|gb|ACLR01000123.1| GENE 13 13347 - 13919 435 190 aa, chain + ## HITS:1 COG:VC0919 KEGG:ns NR:ns ## COG: VC0919 COG1045 # Protein_GI_number: 15640935 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Vibrio cholerae # 8 186 6 174 184 112 40.0 4e-25 MSDMTTHQLILSDLYRYTESHSVKSFLRHLFLTPGFRYMTYMRLASSYRNGKGLKKIAYY YLRFRVMMLQRRYGIQISPSTSIGKGFYIGHFGTIVVSPLATIGDNVNISQGVTIGYANR GERKGAATIGNEVYIGPGAKIVGRVTIGNNVAIGANAVVTHDVPDNAVVGGVPARIISYD GAIGYINRKV >gi|228307988|gb|ACLR01000123.1| GENE 14 13977 - 15188 479 403 aa, chain + ## HITS:1 COG:no KEGG:ABO_0923 NR:ns ## KEGG: ABO_0923 # Name: not_defined # Def: hypothetical protein # Organism: A.borkumensis # Pathway: not_defined # 40 383 36 377 393 89 27.0 2e-16 MNINTDILLGTNVGDVFVGFLTIVFCVFFYRHHRLRDRRFNTVLALFILEHITFTLIYYL YSLHNIADATAYYERGLAYSIDMGYTGTSMVYLIVHILTSLFGLKFFALYWPFSLWGLMG ITWLFKICISLNEGRWSRWFWLFLLPNMHYWSVAIGKDSIAFTGVVAVIYLVYYKRGFLK MAMPLILLFFIRPHILLFGLVAYFATLILSSSKGNAIRKIFLSAIVATILILAAPFLSTY IGTEDGQGLSDRLIEMESATASYYGNTGSDINLQGQNIIVKWVSFMFRPFIFEAHNITSA MASLENSIWLVLFFLVAYRFKSCLTSLKNHRSMKEFLWFAFYGFWVSSLFLSYLIYNLGL AQREKNNFFPYFMILLIIVLAKSASNKKTLHNHTSYPLKPTSL >gi|228307988|gb|ACLR01000123.1| GENE 15 15209 - 16312 252 367 aa, chain + ## HITS:1 COG:Cj1127c KEGG:ns NR:ns ## COG: Cj1127c COG0438 # Protein_GI_number: 15792452 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Campylobacter jejuni # 2 350 10 350 365 138 28.0 2e-32 MSMGAGGAEKVISLFLKELIKDYEVTLFLFYDSIHHPIPDGVKIISLYPSSQNNWLRRLC SIPKGILAYARFLRKTRPDISLSFLYRPNVVSGILAPLFPHIRFIISERNYASIEYAREG VKGWAGRVLLRWAYNRADTLFSNSEHINKDLREHFHLTLPMSVIYNPIELPKERHNVSRE YPTRIVSVGRFSPIKNHTLLFQALRHLPDHRLTIWGEGGLRSEYERTLAELGLSDRVSLP GNTKHVLDEIKQGELFVLSSISEGFPNVLLEAMSVGLPVIATNCLSGPLEMLNENEPIDI EQGGFALAKYGLMINVSDTKGLVSAVNYLSDHYEQRNFYSQKALERAEQYTLPSIYKQLK ALIEEPI >gi|228307988|gb|ACLR01000123.1| GENE 16 16316 - 17473 669 385 aa, chain + ## HITS:1 COG:Cgl0349 KEGG:ns NR:ns ## COG: Cgl0349 COG0438 # Protein_GI_number: 19551599 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Corynebacterium glutamicum # 90 369 6 281 294 110 28.0 3e-24 MKILRILTSSISYQLIKGQLKYMSDNGYEVVGVSGLPEERANEASIREGIKTVITPHLVR SISISNDVRALFELIKLIRREKPDVVHANTPKASLLGITAAWWCRVPHRIYTVTGLRFQT AKGFFRWLLITMERITCRFSTKVIPEGDGVAKTLLDEHITRKPLKKLHNGNINGIDLAYY DESAIPISLLSQAKSETSFSEESFTFIFVGRIVRDKGICELVEAFTRLQQEHPEARLLLV GNFEQELDPLPEDVYHTIQSHPAIYCAGWQNDVRPWFAVADALAFPSYREGFPNVVMQAG AMGLPCVVSDINGCNEIIIEGENGLIIPSHDAVALYQTMKRMIEDKALYTHCQQNARPLI ASRYKQEDVWQATLEMYRSLTGDAK >gi|228307988|gb|ACLR01000123.1| GENE 17 17557 - 18162 299 201 aa, chain + ## HITS:1 COG:NMA0639_1 KEGG:ns NR:ns ## COG: NMA0639_1 COG2148 # Protein_GI_number: 15793627 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Neisseria meningitidis Z2491 # 5 201 3 198 223 237 58.0 9e-63 MIYRKYIKRILDFIGALIMLIVLSPLLLVVTVWLHFANKGAGPFFTQERPGKDERIFKLY KFKSMTDERDAEGNLLPDGERLTSVGRFIRKTSLDELPQLWNVLKGDMSFIGPRPLLVQY LPLYSASQRRRHKERPGITGWAQVSGRNAISWERKFALDVWYVDHLSFRLDCIIIWRTVV KVLRKEGISSASCDTMEPFEG >gi|228307988|gb|ACLR01000123.1| GENE 18 18170 - 18817 351 215 aa, chain + ## HITS:1 COG:Cgl0360 KEGG:ns NR:ns ## COG: Cgl0360 COG0110 # Protein_GI_number: 19551610 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Corynebacterium glutamicum # 4 209 7 215 215 101 29.0 1e-21 MKDIVIIGAGGLGREILGLIQSVNKEEPRWRVKGFYDDGAECGKLIHGLPILGKVEDLNA QQESLDVAIAIGDSSTRRKVYDGLNKQHLSFPALISPDATILDERSVSIGEGVLCCAGTI LTCDITIGAFTLLNLCCTVGHDAVIEPFCSFMPSVNISGETHIGAEVYMGTSSSIINRIS IGKNTTIGAGAVVTKDIPADCVVVGCPARPIKFKS >gi|228307988|gb|ACLR01000123.1| GENE 19 19185 - 19571 197 128 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470674|ref|ZP_04055526.1| ## NR: gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 [Porphyromonas uenonis 60-3] # 51 87 1 37 50 71 94.0 2e-11 MMGAPERSVYGLRYYLCTVIDNVKRSIWRLLHKGESLCCFRDSASFTYGGMLPSDLTLSA LRFILSAKSGQSCKQDCETVDFCNSFICVEYVCLTSHRGILSSACHIRHPMNCDHHLAGC HVKMERES >gi|228307988|gb|ACLR01000123.1| GENE 20 19640 - 20785 1511 381 aa, chain + ## HITS:1 COG:Cj1121c KEGG:ns NR:ns ## COG: Cj1121c COG0399 # Protein_GI_number: 15792446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Campylobacter jejuni # 5 375 2 380 386 317 43.0 3e-86 MAQKKIWLSLAEMGGREQEFIQEAFDTNWVVPLGPNVNGFEEDLTRYLGAPGKHVVALSA GTAALHLGLVMLGVGRDDEVICQSFTFAASANPITYQGAKPIFVDSEPDTWNMSPTLLRQ AIEDRIAQTGHKPKAIIPVHLYGMPAKMDEILAIAEEYDIPVLEDAAEALGSEYKGRKCG TLGRYGALSFNGNKMITTSGGGALVCPSEEAARRVLFYATQARDNAPHYQHTHIGYNYRL SNISAGIGRGQMLVLDEHVAKRRHNHARYCALLADCPGVEVKCAPTEEYDSNYWLSCVLV DPEKAGFTREDLRLRLEAEAIESRPLWKPMHLQPVFAEAPRYVDGTSERLFDRGLCLPSG TLVTEEDLQRIVAVIRELGKR >gi|228307988|gb|ACLR01000123.1| GENE 21 20905 - 21975 611 356 aa, chain + ## HITS:1 COG:STM0595 KEGG:ns NR:ns ## COG: STM0595 COG1169 # Protein_GI_number: 16763972 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Salmonella typhimurium LT2 # 97 351 121 384 391 115 31.0 1e-25 MNRRAPFACFRLPGEGRTVHEIGLQNEARAVATTTEELREWKKHLAGFLMAPFAVTIETP MLWIEEEQGKQGASVLQLAACDEAELESFPPVAPIPQALPDSYRVTFARFMEHLQDGMAE KLVLAHLVELPSIATAQVVGAFDKALTHYPNAFVSLCYTPQSGLWLCATPEMLLRGDGAD WQTVALAGTMPRQADGEPSVWSEKNRREHHYVQRFIGELLEQEGIPYQALDVETTTTGQL QHLQARFALQLPEGYAPITLAERLHPTPAVCGTPQRVAQRLILEEESAERSYYAGFLGWY EPERRVDLFVQIRCLQLLPEQALRLYAGGGIVRGSSLESEWQEVLHKLSAIHSLIR >gi|228307988|gb|ACLR01000123.1| GENE 22 22001 - 23719 941 572 aa, chain + ## HITS:1 COG:BS_menD KEGG:ns NR:ns ## COG: BS_menD COG1165 # Protein_GI_number: 16080134 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Bacillus subtilis # 6 489 10 494 580 197 33.0 7e-50 MDDLVISELIALLQAHGVRDVVLCPGSRNAPLVHALSHYLTRATCHSIIDERSAGFYALG LALATHREVVVCCTSGTAVANLHPAVAEAYYQGVPLVILSADRPERWIGQWAGQTLPQPG LFGSLVRKAVQLPEPHTDEERWYCNRLINEALLVALAPLPGPVQINVPISDPSVSLLPPT PAEQQSDPSDRRPIGMQSGRHIKQCCPCGVDAQAVKPLLERLATFERKMILVGQESWTAT TSAGAVFPQSLREQFLCIGESLSNRPVTICSLDALLASLSEADRRALQPDLLITLGGHIV SNKIKQYLRNYPPRETWHLSPDPSVVDLFCSLTELITAPVGPFLEIMAQGLAGHASSPYA LQWRERIDRLPSPTPRYSSLAVVGNLLNQLPEEPCVLHLANSSSVRYAELFRKPRRLLTL CNRGTSGIEGSLSTALGFARQRTEERHFIVIGDLSFFYDLNALGLPEVGSNVRVLLLNNQ RGSIFQSLPTLEMDPLSRRYITAEHQLQAQGWAESCGWEYLSVHEAGELEETMAYFVGPA KRPRILEAFVSSEDEIAELQTYFKQLQPREEL >gi|228307988|gb|ACLR01000123.1| GENE 23 23716 - 24546 1087 276 aa, chain + ## HITS:1 COG:BS_menB KEGG:ns NR:ns ## COG: BS_menB COG0447 # Protein_GI_number: 16080132 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Bacillus subtilis # 9 276 4 271 271 408 69.0 1e-114 MSEKNQRVWKPLKAYEDILFDYYNGIARITINRERYRNAFTPTTTAEMSDALRICREDQS INVVVLTGAGDKAFCSGGDQNVKGRGGYIGKDGVPRLSVLDVQKQIRSIPKPVIAAVNGY AIGGGHVLHVVCDLSIASENAIFGQTGPRVGSFDAGFGSSYLARVVGQKKAREIWFLCRQ YSAQEALDMGLVNKVVPLDQLEDEYVQWAEEMMLLSPLALRMIKAGLNAELDGQAGIQEL AGDATLLYYLTDEAQEGKNAFLEKRKPNFEQYPKFP >gi|228307988|gb|ACLR01000123.1| GENE 24 24553 - 25659 787 368 aa, chain + ## HITS:1 COG:AGpA707 KEGG:ns NR:ns ## COG: AGpA707 COG4948 # Protein_GI_number: 16119707 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 151 265 67 179 299 82 38.0 2e-15 MSPHESILHLPALLPQIAERLTISVEPYTLRFRRPAKTSRGEYETKRVYYLRLQSLEQAG HVGCGECAPMPQLSCDDLPNYQAVLEQLVGQMAQAPDRFDVASLRPYPSIAFGLATAINS FIAAGHSSEEGSEKPFCDTPFTRGELGIPINGLIWMGDKAYMYEQIKAKLAQGFRCLKLK IGGIDFSEELELLRYVRQHFSPEEMELRVDANGAFAPEVALERLKRLSDFRLHSIEQPIP ASDQWDELAKLTAASPLPIALDEELIGIHSRERKAQLLDEGKPHYIILKPSLHSGVDEWI ELAEERGIGWWATSALESNVGLSAIAQWVSQYPIVRPQGLGTGALYLNNTPSTLRLVGDQ MFFREVRD >gi|228307988|gb|ACLR01000123.1| GENE 25 25690 - 26778 713 362 aa, chain + ## HITS:1 COG:Cgl0445 KEGG:ns NR:ns ## COG: Cgl0445 COG0318 # Protein_GI_number: 19551695 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Corynebacterium glutamicum # 53 358 67 376 376 97 28.0 3e-20 MSEHLYIDSARVDAESLEPFARGLAPERRAVLGPLLTFLREWWSEEEYVPVQTSGSTGTP KRLQLAKLAMRRSGLRSNRYFQIQAGKRLLLAMDLRYIGAKMMVVRALLAGAELVVVPPS SHPLATLSVAPQFVSLVPLQLHHTLEVPAERELLSRAEQLIIGGGAIHPAVEAQLSALPV AAFATYGMTETISHIALRRLNGPHVSPLFYPLKGVHLTQGTEGELIIEDRLLYPDGPSLT THDLVELHPDGGFTIVGRSDNIINSGGIKISPEPIERKLAEALDRPLVISWIADAALGQK LVLVLEGDSLSESFMETLAEACQQLLPSYHRPKEIRLVSHLPHNDNGKLDRQALQRLLLT SK >gi|228307988|gb|ACLR01000123.1| GENE 26 26876 - 28519 463 547 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 61 531 23 482 508 182 30 6e-45 MPTPPFKYQPMYPVGPDRTEYELITSDYVHTVDCNGHQMLQVEPEALRILAERAMHDVAF YLRPAHQEQVASILSDPEASDNDKFVALTFLRNAEVSALGQLPFCQDTGTAIILGKKGQN VWTGACDEEYLSHGVYDTYTRYNLRYSQNAPLDMYREVNTGCNLPAQIDLMATEGDEYKF LFIAKGGGSANKTYLYQETKALLTEERLFPFLVEKMRSLGTAACPPYHIAFVIGGTSAEA NLKTVKLASAKYYDELPTKGNELGHAFRDLEMEQRLLEATHEIGLGAQFGGKYFAHDIRV IRMPRHGASCPVGLGVSCSADRNVRAKINKDGLWIERLEKHPARLIPESMRHGTEGEVVK VDLNRPMDEIRKQLSQYPVSTRLSLSGTIVVGRDIAHAKLKERLDRGEELPQYIKDHPIY YAGPAKTPEGMPSGSFGPTTAGRMDPYVDLFQSHGGSLIMIAKGNRSQQVTDACKAHGGF YLGSIGGPAAILAQESIKRVECLEYPELGMEAIWRIEVENFPAFILVDDKGNDFFQQIRQ CAGCPRG >gi|228307988|gb|ACLR01000123.1| GENE 27 28695 - 29975 1891 426 aa, chain - ## HITS:1 COG:aq_479 KEGG:ns NR:ns ## COG: aq_479 COG0112 # Protein_GI_number: 15605959 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Aquifex aeolicus # 1 424 5 410 428 488 57.0 1e-137 MKRDQEIFDLIEQEHQRQQKGIELIASENFVSDEVMQAMGSCMTNKYAEGYPGKRYYGGC EVVDKSESLAIERVKKLFGAEYANVQPHSGAQANMAVLFTCLKPGDTFMGLNLDHGGHLS HGSPVNSSGILYNPIGYNLSKETGTVDYDEMEQLARQHKPKLIIAGGSAYCREWDYARFR KVADEIGAIFMVDMAHPAGLIAAGLLENPVKYAHIVTSTTHKTLRGPRGGIILMGKDFEN PWGLKTPKGAVKMMSQLLNSAVFPGIQGGPLEHVIAAKAVAFGEALDPSFKEYQKQVMKN AKALGEAFVKMGYNCISGGTDNHCLLIDLRSKYPDLTGKVAENALVRADITVNKNMVPFD SRSAFQTSGIRVGTPAITTRGVKEDKMPYIVELIDRVLRDPENEAEIAKVRKEVNEMMSP LPIFAW >gi|228307988|gb|ACLR01000123.1| GENE 28 30185 - 31276 1441 363 aa, chain + ## HITS:1 COG:no KEGG:PG0082 NR:ns ## KEGG: PG0082 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 89 357 42 295 300 138 32.0 3e-31 MKRTYWTLSLLFALSLLMTMSCSGEDPIKAKRIAIENGTYKPNPKPNPNPEPNPNPNPEP NPNPDPNPNPNPNPNPNPDPNPNPNPNPNPNPNPNPEPKPEKKTQEITFTFDEWASPRAE ASYLMPVEKSLPKVLAGDPFWEAVSNVGAAWVGISKPEGYPIHPLTKGRTGQALEAMTIK GKRVFGFGSHIIAGALYSGLFAKDLMMSKPLECTQFGQPVFAIPLSIKGYYQWLPGEKLI DGSKAIAKEIKGKQDNATIACVFYDISQDNSYLNGKTLYTDPRILAKVQIHPTPTKDGAW TPFEGKLEIVHEAAYKQIDFQKGKYRMVLIFSSSADGDKFIGAIGSRLRIDDFTVTLGIP TQK >gi|228307988|gb|ACLR01000123.1| GENE 29 31289 - 32047 1006 252 aa, chain + ## HITS:1 COG:no KEGG:PG0083 NR:ns ## KEGG: PG0083 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 36 252 34 259 261 145 32.0 1e-33 MTTRQLHRGAIGLLLALLTTPLLWAQASQESKDDLEFGIKAGLNVGATTPLPKPKAIDKI YTWNPHMNIAIKGWLSYHLPDTKGWHLDTGLEMERKGMYVCTHATDMRINMGEGQEAAWG LFTGNNSTEFINYYLTLPMLVAYHTTSDKFRMQVGFYLSYLMQQSFKVTLDGDGTFNGTP FQPGHLIDLDLSDHFNKLDMGVRIGFDYFFHQRLGLTTQLNMSFEPALDRSFTMMPFPLY NIYAFAGFAYRI >gi|228307988|gb|ACLR01000123.1| GENE 30 32144 - 32362 88 72 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISSVGSLLSAPRSRKIYRNFEIFLPKFHFILPNFYFPVPWRIFFSSLAASKFLRGDRLE DKMSRALFMALC >gi|228307988|gb|ACLR01000123.1| GENE 31 32447 - 33151 510 234 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470269|ref|ZP_04055173.1| ## NR: gi|228470269|ref|ZP_04055173.1| hypothetical protein PORUE0001_0630 [Porphyromonas uenonis 60-3] # 27 234 1 208 208 408 99.0 1e-112 MKPITYMRCAASLLALLLLATSCCNCVPPTPQEPQENTFKAKFTATPNSFSGDGGYGKVY GVLQELSPSGELLHETPLEDSEFTLHFEKYSSEIEPCVYGPNEFFVRGGINAKTFKIEAE VISGKGKGCKQTILIMRGGWRFSFKAEPSQFTSKGGTGKVIGTMYITDFDGNVVREGNLC DSNFGLNVSGNPKGITVDFDAKTFTVAAGGPATFELRAYTGYGQPYLIEIKREG >gi|228307988|gb|ACLR01000123.1| GENE 32 33354 - 34946 1704 530 aa, chain + ## HITS:1 COG:no KEGG:BVU_2944 NR:ns ## KEGG: BVU_2944 # Name: not_defined # Def: putative transmembrane protein # Organism: B.vulgatus # Pathway: not_defined # 17 437 5 425 510 314 42.0 7e-84 MAQELHDQTTDAHTMPSSRTQRIARNTLFLFVRMAVVTLLSLYISRVLLAALGVEDFGVY QVVGSLVTAFGFVNGAMVAATQRFYSYELGRGNDSGVGRVYSVSIVVQLLLILLICAVAI PFGLWYVPSHLVAPPERLTVALWIYFISLGTFVVNMLLTPFQSLIVSHERMNLFALLSIV DISLRLGAVLLLKAYAGDKLLLYPILLLAVSGVMALCYVGCTRRLFRQVHFRWVRDRSAY REILSYSGWNLFGNLAAVAQTQGINIVYNYFFGPVLNAAFGIVNSVRGALITFANNYQMA ANPQIIKSYAAEEYGYLHKLICASAKISYLLMLCVVIPFALDLDLLLRLWLVKPPAYASL LLQWTLIVLLIESLSGALMTGIQATGRVRIYQVVVGGMIIMILPLSMLAFWLGAPPEYSI YINILVSIACLAVRLVLSYRYHALGVGYYLKRVVLPILPPTIVMLVGAYLYRHLLPYVGS IWGLLVASILLGGLCVVVILTLSLTVEERQLVKGYLHLSKRRQAPKNLPN >gi|228307988|gb|ACLR01000123.1| GENE 33 34951 - 36060 1019 369 aa, chain + ## HITS:1 COG:no KEGG:Dfer_0060 NR:ns ## KEGG: Dfer_0060 # Name: not_defined # Def: hypothetical protein # Organism: D.fermentans # Pathway: not_defined # 5 369 2 368 368 200 34.0 9e-50 MTTKRIHILTHPLGANYGGIMQAYALQQALRQMDYEPVTLDIPFDRRSRLRRWAEAQVRT VKRISYDQSIRSERVVLQHTSRFVQQHITLSPPLRSDAQLRQHYRKQPAHAYVVGSDQVW RQEFVPMLDDYFLGFIPEADPVRRIAYAASFGVDPIDIAPERTALYSELLSRFVAISVRE SSAVPLLAQRFGATAQWVLDPTMLFTKEEYIDQLGLREEPSGEVFAYMLTHTPHKEELAR QIAESHHTTYHLFAPWRHWTKRGQELEACILPPVERWLEGILNAQCVVTDSFHGVAFSLI FGKPFVAIVNNHGGCSRFDTLIKLFDLEHHQEGAYELVSSPKCYDVKAIAQTLARHRITS IGFLESALH >gi|228307988|gb|ACLR01000123.1| GENE 34 36225 - 37073 657 282 aa, chain + ## HITS:1 COG:AGc2283 KEGG:ns NR:ns ## COG: AGc2283 COG1596 # Protein_GI_number: 15888569 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 106 209 63 165 190 61 34.0 1e-09 MTIQRIFYQMKPLACTHPHVLGGLLLAWIFLLATSCASRKDVVYLQDATAGTVSQYTIPV PRIVKGDMLGITVNSKNRELSEPFNLPMVGYYSAFGISASNTQQGYIVDDEGYISFPGLG RVHVDGLTRNELNTKIATELRDKGLLNDATVTVSLLNAQISVLGEVAHPGRFPMVSDQVS ILDAIAMAGDLTIQGRRDNVLVIREVNGERHIVAHDLRSDKIFDSPCYFLRQGDIVYVEP NDAKAQTASINPNNNVGTWLSVISTATSLTTFVFTIVANQRR >gi|228307988|gb|ACLR01000123.1| GENE 35 37121 - 38821 1798 566 aa, chain + ## HITS:1 COG:TM0644_1 KEGG:ns NR:ns ## COG: TM0644_1 COG3206 # Protein_GI_number: 15643409 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in exopolysaccharide biosynthesis # Organism: Thermotoga maritima # 227 543 132 478 561 61 18.0 5e-09 MEYATDSIQQEPARSLEEASTLSLQDILMILKANWLFILLSLIVCLTLGFLYIKSSPHQY SRSASLLIKNETPMSSAMQQLAQFAGDKHAYSDDVSNQIIILSTERVVSETVRRLGLDVQ YHYNAGLREKDLYKQSPVSIRFVNADPDEKITLRVKPDKGSDSQVILYDIKSSLVGKVQE PITAPLGDTIATPIGQVVVEATPYYSNFPSYEVLKVQKENFHSIVDSYMRSLQVSLQQKD ASVIKLTMQSSNPQLAEDFLSTLILVYTELEREDKVKVAESTQRFVDDRLAIISSELGQV DAEIEGFKQSQQIADIQAEAQEYIKGRSEIKTRLVELNNSISIAQFVRGHLKDKNQMEAL IPANVGIASPAIEAAIAKYNELLLKRDQLQANSSSQNPLVQELNTQLAAQRLSIITSIDN LISTLEVERQGILSEQSSYKGRITSVPMQERIVGSIYRQQKIKEELYLFLLNVREQNALS IESAESNARLIQAPTGPVAPVSPRVPIIMLAAGLLGLLIPTAIIYIRSIANNKVRGKADS RALHDYTCTRRGATLQGLQAPRQEYW >gi|228307988|gb|ACLR01000123.1| GENE 36 38872 - 39606 676 244 aa, chain + ## HITS:1 COG:BS_ywqD KEGG:ns NR:ns ## COG: BS_ywqD COG0489 # Protein_GI_number: 16080678 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 7 230 13 230 237 123 35.0 3e-28 MIDQASRTFVVGRHRRSLVSEAFTVIRSNISFLAPDNGAPVKRILVTSAIPGSGKTFTSS NLALSLAQSGKRVLLIDCDIRKNTLSKAIGMHCRGQLGLSSYLSDARITPEQIMSPSLQT ESLIFLPSGPIPPNPTELLMSPRFEELLQYADEAFDYIVMDTIPVLNLADTRVISHLTDI TIMVVRENHLPRRLLHELEALYRDKRLKGLCVVLNDAGIGASAYGYGYGSYGYGSYGSYG SEKE >gi|228307988|gb|ACLR01000123.1| GENE 37 39643 - 40389 472 248 aa, chain + ## HITS:1 COG:CAC3062 KEGG:ns NR:ns ## COG: CAC3062 COG4464 # Protein_GI_number: 15896313 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Clostridium acetobutylicum # 21 243 1 219 254 116 29.0 4e-26 MWWFTKHKKVDIISAGWLEGMTDIHCHLVPAVDDGSRSLEETHQLIETMRSIGIQRIITT PHIYRRYPHNDSNTLQQELEQLLPKLSDMRVPLMLGAEHMLDEGFEAHLDKPLLTLGDSK YLLVETSFVGAPLDLYRLIQSVIVSGAIPMLAHPERYLYMDDKTYDHLRGAGCAFQLNLF SLTGMYGEQVQRRAQQLLERGVYSFVGTDTHRIELFRRTISSAKTYARYEDTIRTLIKNN DTLIATHM >gi|228307988|gb|ACLR01000123.1| GENE 38 40428 - 42455 2417 675 aa, chain + ## HITS:1 COG:BH3718 KEGG:ns NR:ns ## COG: BH3718 COG1086 # Protein_GI_number: 15616280 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Bacillus halodurans # 92 619 56 577 608 321 36.0 2e-87 MKTKVFLRKCLGSRYVNYRIIALIDLLLSVIASLSAVFIASYALLTLTGIYFHESVAEYT GIDHPTLSFIVLSGGFSLLILLLFPVYKGIIRIRTFSYGFNYLWLSLCKALVLGLTLGVL SREWLFGVVYFALDTLFTLFFLTGFRTVVQFIWSFVNGAPSTMSRTPALIFGVDDRSSQL ADKLSNSYQGKGLYVVGFVETNQPTEKMTVGGKPIFYTPDTVAFSALLDKHHISVLLFSG YDVLHENATFASICIDRKIRLLVDQEPRRILNVDSRPPIEEIQIEDILGRESIFLNMKPI SEALHDKTILVTGATGSIGSEIVRQLARLEPQMIVLFDIAETPMHELRLELQRCYPSGHF AYVMGDIRNPQRLDFVMRKFHPDKVFHAAAYKHVPLMEENPCEAVTTNIIGTFNIASKCL EHGVEQMVMLSTDKAVNPSSVMGATKRFCEMIVQSLDLAIKRGEVLAEVPTRFATTRFGN VLNSAGSVIPTFKHQLQRGGPLTVTDPRIERYFMTIPEASQLVLEASMLSRGGEVFVFDM GDLVKIADLAKRMIQLAGYEPDKDIKIIYTGLRPGEKLYEETIHDKEKDLPTAHNKIHIV QTREEAFERIRQMVQLFKRLAHEGDVNGVVYLLKKAIPEYKSLNSDTFAAFERGEQIPFN LEAELNNIATELAQN >gi|228307988|gb|ACLR01000123.1| GENE 39 42498 - 43034 480 178 aa, chain - ## HITS:1 COG:YPO3215 KEGG:ns NR:ns ## COG: YPO3215 COG0703 # Protein_GI_number: 16123374 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Yersinia pestis # 2 151 4 152 174 95 37.0 4e-20 MTIYLIGYMSAGKSTVGRMLAELLGYEFVDTDIYIESRFRQRVSDLFRLHGEDYFRQKER MILEEIAGLNDAVIATGGGLPIYHDNMDMLLESGTVLYLRYSSEVLAQRLELTKRTRPSV AHLTGEELRQHVAEAMRLREPIYSRAHHTIDMEALAMHGVNSEAKIASWIAQQLRLKA >gi|228307988|gb|ACLR01000123.1| GENE 40 43031 - 45082 547 683 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 205 680 251 732 750 215 29 1e-54 MTQFKTTHLYALLTFVLLALVITLLSPHDEETFQYQVVEGKPWTGDELLVAPFTFPIYKS DEMIQRERDSARQTVLPYYQIDTVVGGKMLRKWDEDWSSKWSGEVTDDAYYFYMRDYLKD LYRNGIIEEEVASKLRQEDVLEVKLLSADQVSRLTPTTLFSTPMESYQQATERLPQGMSK SIVRKFDPSKYIEVNVYPNEAKTQQVIDDELRNLSKSMGVVQKGERIIGKGEIVSPHQYD ILQSLRRVTEEQQDSNLRQVLPMSVGTFLIIVSLLLGLWFFLFYYRPQIVKEYKNTLFLS LLILIYAVLTIIFARNELGAWVYAIPFVSVAILVRTFFESRTAIYAFLTTVLICALYVAF PLEFVVIQFVAGLVAVFSLRSLSSRAQIIRATFLIFVIYNVMTCSYSLMMGGALGGNDLS NLLYFSFNLIFNMFSYLLIYLIERAFGYVSNITLVELSDVNRPLPRQLSEQAPGTFQHSM QVALLASEAATAIGADARLVRAGALYHDIGKMRNAAYFTENQGAINPHDQLTPTESAAVI IKHVTDGLAMAQKHNLPQAIQDFIRMHHGRGMTKYFYTQYCNDHPDETVDADKFTYPGPN PNTKETGILMLADAIEASSRSLKDLSKETLIAHVNKIIDAIVADGLLNDTPLTFRDIQTI KEVFAEKLATIYHSRIAYPELKR >gi|228307988|gb|ACLR01000123.1| GENE 41 45690 - 46514 411 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 3 273 4 262 283 162 36 6e-39 MSVTIEDIKKLRKMTGAGLSDCKNALNETAGDFEKAIEIIRAKGKAVAAKRSDREATEGC VLAAHSEGFAAIVSLQCETDFVAKNEGHISLTQQILDVAMKEQPATKEDLLKLPLADGRA VSDHITDRIGSTGEKMELGNYEFLKAPYTTSYIHFGNKLAAIVAFNEAIDAEMGREIAMQ VASMNPVSVSEQDVPAHVLEEERKVAMDRARESGKPEAICERIVEGSIQKFYKENTLLHQ PFVREPKMDVQSYLHTASKTLTATGFKRVNLNED >gi|228307988|gb|ACLR01000123.1| GENE 42 46526 - 47419 1508 297 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470250|ref|ZP_04055154.1| ribosomal protein S2 [Porphyromonas uenonis 60-3] # 1 297 1 297 297 585 100 1e-166 MSLVSFDQLLEAGAHFGHMPRKWNPAMAPYIFMERNGIHIIDLHKTVAKIDECAEIIKNM ASSGKKILFVGTKRQAKEPIAELAKSVGMPYVTERWPGGMLTNFPTIRKAVKKMGQIDKM REDGTYNNLSKRERLQLDRQQAKLDKNLGSIRDMNRLPNALFVVDVMREHIAIREAQRLG IPVFAIVDTNANPRDIDYVIPANDDSTQAIELIVSAMCQAINEGQVEYKAIKAEKEAEEA AELAPSGRRQRTGARRERIRPANAEEERSEEAPETVEEVAQTAEETAPANEEAANQQ >gi|228307988|gb|ACLR01000123.1| GENE 43 47644 - 48030 631 128 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470310|ref|ZP_04055214.1| ribosomal protein S9 [Porphyromonas uenonis 60-3] # 1 128 1 128 128 247 100 2e-64 MEQINAIGRRKAAVARVYLTEGSGKITINKKDIASYFPSSVLQFIVKQPLVKLEVADKYD IRINLAGGGFKGQSEAARLGIARALIKINPEDKAALRAAGLVTRDPRVVERKKPGRPKAR KRFQFSKR >gi|228307988|gb|ACLR01000123.1| GENE 44 48045 - 48500 798 151 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470335|ref|ZP_04055239.1| ribosomal protein L13 [Porphyromonas uenonis 60-3] # 1 151 1 151 151 311 99 8e-84 MNTLSYKTQSATKESAQKEWLVVDAEGQRLGRLCSIVAKILRGKYKPCFTPHADCGDNVI IINADKVELTGNKWDTPSYLTFSGYPGGQREFSPRDFQNKSSRKLFEKVLKGMLPKNKLG AELLTHVRVFDGPDHTMEGVQPRKVDINSYK >gi|228307988|gb|ACLR01000123.1| GENE 45 48892 - 51621 3474 909 aa, chain - ## HITS:1 COG:BMEI1436 KEGG:ns NR:ns ## COG: BMEI1436 COG0574 # Protein_GI_number: 17987719 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Brucella melitensis # 5 895 46 917 930 1033 58.0 0 MKNKKRIYTFGNGSAEGNAQMRDLLGGKGANLAEMNRIGVPVPPGFTISTEVCTEYYERG REAVVADLKDDLMAAVKHIETIMGFKFGDVENPLLVSVRSGSRASMPGMMDTILNLGLND TVVDGLARKSGNERFAWDSYRRFVQMYGDVVLGMKPVNKDDIDPFEAIIEEVKKEAGVKL DNELTTDHLKDLVKRFKAAVMKATGHDFPTDPYEQLWGAIMAVFGSWMNDRAILYRKMEG IPDDWGTAVNVQAMVFGNMGDTSATGVAFTRDAATGENLFNGEYLVNAQGEDVVAGIRTP QEITIEGSRRWAERAGIDEATRKAQYPSMEETFPNIYAELNAIQHKLEEHYHDMQDLEFT VQEGKLWLLQTRNGKRTGQAMVKIAMDLLRDKQISEEEALLRVEPAKLDELLHPVFDKKA LQSAKVLSKGLPASPGAATGQIVFFADDAASWHEQGKNVIMVRIETSPEDLAGMSVAQGI LTARGGMTSHAAVVARGMGKCCITGAGGLIVDYKARTVTIDDKVLREGDFISINGSTGEI YEGQVETKAAEMDADFRQLMELADKHSKLAVRTNADTPHDAATARAFGAVGIGLCRTEHM FFEDNKIKAMREMILATDTEGRRKALAKLLPIQTEDFKGIFRAMKGLPVTVRLLDPPLHE FVPQTESGQVELAKAMGVEPKVVHDRVEQLHELNPMLGHRGCRLGNTYPEITEMQTRAIL GACLELKKEGIETHPEIMIPLVGVVEEFKQQARVIRETAEALFKEQGDRIDFLVGTMIEV PRAALTADEIGKEADFFSFGTNDLTQMTFGYSRDDVNTFLPTYLDKKILKVDPFQQLDQR GVGQLVQMGAEKGRSAKPTIKLGICGEHGGDPSSVEFCHRVGLNYVSCSPFRVPIARLAA ARAAVEDKK >gi|228307988|gb|ACLR01000123.1| GENE 46 52237 - 54549 2924 770 aa, chain - ## HITS:1 COG:no KEGG:BDI_1105 NR:ns ## KEGG: BDI_1105 # Name: not_defined # Def: putative outer membrane receptor protein involved in Fe transport # Organism: P.distasonis # Pathway: not_defined # 13 770 6 769 769 205 24.0 6e-51 MSSKIYPHLLGAMALLLITAGALAAQTITIQGRVLASSDSTALVGASVGLFDDKGQLTSG VSTESEGQFALQADPQVARELRISSIGYTPMTIQIAGDARGVIALGTLYMSEDSQLLDQV VVQGQRSRVDKMLLFPQQAELARSQDFLSLLQTMQLRGLTIDLMNKQASIRGGEVQWQID GVPRTIEDVQSIDPKRILRIEYSDMVSARYTDRGIGGIVNVILKERLQGGSVWTQVESAL TTGFVNGALGARYDRGLHSFTLDYNNGFRNYRKRFAYLETKYIAPHEELTRTETPEASPF GYMVQNLNLSYLYKPSERQQFSATLRNEFVNYHSNSVSQIAQSGSDPFHRESSVKERSYT PALDLYYANMLSNGGKLEVNLVGSYSHGTHSFSLQDQMARQMREVQNAVDVSRTALIGEV VYNHPFSSHFMLATGLQHTTAYSLNKYVEMTDNLLENNSYLFANAQGQLGKVQYSIGTGA KLFVVQDATDKKLFVRNQSTLSLFYSPINHLTLVLKSTYLPTLPSLSMLSRVQQRVDDLM RTSGNPDLKAAQSLYNRFGVYYQTKLFTSNLDFSINNTWAPILWDATYDVAGGYFLNRAT NGRFNRQYSISWQGGLNNLWNFLTLQGTVRYDMFRTHTGVAAYQLNSLYWDVSVMMSYKG WTLGYDYVHPQWTLSGHTKSLGENSSRLILLYKYRDWSFYASCIFPFTPRGSEYQSETLS PVIPSTSRVYILDNRNMVTVGVAWRLNFGKQLQLIDRTLQNRDSNESVIK >gi|228307988|gb|ACLR01000123.1| GENE 47 54693 - 54887 160 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRGSRNLRNGSVGIWNCSARKQKNLRNFDLLLPKFHFILPNFYFPAPWRIFVSQRAIGDF LRGD >gi|228307988|gb|ACLR01000123.1| GENE 48 55050 - 56267 1567 405 aa, chain + ## HITS:1 COG:BMEI0866 KEGG:ns NR:ns ## COG: BMEI0866 COG2204 # Protein_GI_number: 17987149 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Brucella melitensis # 14 253 181 419 528 239 49.0 8e-63 MNVDLQQVMQRFGIVGRNPSFLRAIETAVQVAPTDLSVLVTGESGVGKEFFPKIIHAYSL RKHQGYVAVNCGAIPEGTIDSELFGHRKGSFTGAISDRKGYFEEADGGTIFLDEVGELPL ATQARLLRVLESGEFIPVGASKPLKTDVRVVAATNVNIQEAIARGRFREDLYYRLSTVPI VVPPLRKRQEDIVLLFKLFASLSAEKNQIPMLEITPEAEELLRRYPWPGNIRELRNLTDR ISILEYDRHLTAEDLRGYLPDKTQELSTSLVPVGRQSEERSFANEREILYQVLFDMKRDI TSLKQTIATMRQEPHYEPIHTALVPTDMKPMHTEAEEVTEPDNEVVTTPVEEPTLPDKPM TIEEAERILIMRALERHGGNKTEAAEELNISPRTLYRKLQSYGEE >gi|228307988|gb|ACLR01000123.1| GENE 49 56293 - 56775 585 160 aa, chain + ## HITS:1 COG:no KEGG:BDI_0193 NR:ns ## KEGG: BDI_0193 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 2 160 21 178 178 164 50.0 1e-39 MLLLMGTSCSIKYKFNGATIDYTRIKTVTIEDFPNQAPLVYPPLSQMFSERLREQFRRNT RLEPVQTNGDLVLEGAIVGYELTPMAMQEDALSAMTRFTITVRVSYTNMVEEKKSFSGRT FTSSQEFDSNNLFSDIQEGLANELIDDLVKQIFNATVEDW >gi|228307988|gb|ACLR01000123.1| GENE 50 56775 - 57494 666 239 aa, chain + ## HITS:1 COG:no KEGG:PGN_0259 NR:ns ## KEGG: PGN_0259 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 4 235 1 230 235 142 41.0 1e-32 METMTIDELNRLTAHPEELSRHTLSPLAELVETYPYAQSIVMLYLLNLSILGDLRYEAEL QRWAPHLPSREKLYLLARLHMPLEDLTPVLAHDPSDSFALVDQYLRKVAEREGPLSNDLE YDSAEALPTKERTPDYFSAAEYESAPSDMTLSGLIPTDSAESEPAPAPAPQPIVTSSDES EPSDMLFTETLASIYIKQGHYERAKQIIEGLSLKFPEKISYFAVQLDFLEKLIDNASHS >gi|228307988|gb|ACLR01000123.1| GENE 51 57519 - 57914 592 131 aa, chain + ## HITS:1 COG:no KEGG:BF1084 NR:ns ## KEGG: BF1084 # Name: secG # Def: preprotein translocase subunit SecG # Organism: B.fragilis # Pathway: Protein export [PATH:bfr03060]; Bacterial secretion system [PATH:bfr03070] # 1 122 1 125 126 96 51.0 2e-19 MQIFLTILILIAAILLILIVIVQNSKGGGLAAGFGESNKYMGVRKTTDFLEKATWTLAGA MVVLSIASSFFIKPQVQGNQGESFIEKSQQSEPLLPQQPEATLPLPGASTPAPAAETPAP EAQPEATQPAE >gi|228307988|gb|ACLR01000123.1| GENE 52 58093 - 59367 1538 424 aa, chain + ## HITS:1 COG:aq_298 KEGG:ns NR:ns ## COG: aq_298 COG0172 # Protein_GI_number: 15605830 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Aquifex aeolicus # 1 423 1 422 425 343 44.0 5e-94 MLTIKQILDDPQGVIERLAVKHFPAEEPIAAIIAQDKLRRDAQHKKDDSLAQQKLLSRSI GEKMKAGAREEAEQLKAEVQTLKEISKQAEETMRQAEETMRQLLLSVPNLPHPDVPHGTS AEDNLCVATGGEMPHLEGTAKLPHWELAKQYDLIDFELGVKITGAGFPVYRGKGARLQRA LINFFLDRATAAGFMEVEPPIMVNEASGIGTGQLPDKEGQMYHAQLDNLYLIPTAEVPVT NIFRDVILEADQLPICCTAYTPCFRREAGSYGKDVRGLNRLHQFDKVEIVSIDRPDHSWQ QLDKMIAHVKSLVEELELPYRILRLCGGDLSFTSAMTYDFEVFSAAQERWLEVSSVSNFE SYQANRLMCRYRDPEEGITLCHTLNGSALALPRIVAALLENNQTPEGIIIPKALRPYTGF DKID >gi|228307988|gb|ACLR01000123.1| GENE 53 59394 - 59864 738 156 aa, chain + ## HITS:1 COG:TM0254 KEGG:ns NR:ns ## COG: TM0254 COG0691 # Protein_GI_number: 15644629 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Thermotoga maritima # 16 156 16 156 158 130 46.0 6e-31 MAKKGKQSARAINIRNKRATYDYELLDQYTAGIVLVGSEIKSIRAGKAALVDSYCYFSHG ELWIKNMYIAEYSYASYNNHVERRERKLLLNRKELRKLEEEMKNPGQTIIPVRLFINERG LAKLVVALARGKKQYDKRASIRDREDKRRLERAMRF >gi|228307988|gb|ACLR01000123.1| GENE 54 59955 - 60554 266 199 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470256|ref|ZP_04055160.1| ## NR: gi|228470256|ref|ZP_04055160.1| hypothetical protein PORUE0001_0655 [Porphyromonas uenonis 60-3] # 1 199 1 199 199 399 100.0 1e-110 MRRIKFAFTIIACLLTACAPVATNLDHQSKPVSEVTRLDSIAITLAEIRALDQGIRDNSN LYRTNSRAFKLHTDSLCFSKAIWLIEHYGYINDLGKYNDSFGYLFEALPAVLLHNPQRLI EPHTYDLLKREVKAGRLSAEFAATLLDKYYVMKEKRTLYFSEFRKWLQPPYPQKRDQALS DSLRQDLGLPVLPDSLFVY >gi|228307988|gb|ACLR01000123.1| GENE 55 60875 - 61807 1329 310 aa, chain - ## HITS:1 COG:PAE3115 KEGG:ns NR:ns ## COG: PAE3115 COG0379 # Protein_GI_number: 18313834 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Pyrobaculum aerophilum # 9 310 2 306 307 278 47.0 9e-75 MTQQQIEALYAEIRTLKEQKNAVILAHYYARPEIQRIADHLGDSLALSQIAGQTDADMIV FCGVSFMGETAKIISPNKKVLCPVPHAGCTLAEGATAEGINTWRVKHPDGIVVSYVNTTA AVKAVTDYCVTSANALKIVRALPTGQPILFGPDKNLGQYIMNVTGREMDLWQGACYVHAE ITSELVHTMLDRYPEAEILIHPESVAASDQSIVDNPRCIIGSTTTIIKQPSVSHLKQYVI ATEPEILAEMTRRYPDTELIPILPDQTCEYMKMITLEGLRDALLYEQYEVHVDEELRQKA WRSIERMLQF >gi|228307988|gb|ACLR01000123.1| GENE 56 61854 - 62711 510 285 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 8 280 9 283 286 201 42 2e-50 MTDIYNSEEFATLIELAYREDAPTGDLSTRYLLSESDRAIATLIAKDDGIISGLDVAYMV LCRCTPEEEMTFTSEYEDGDEVRKGDILATIEAPYADLLRAERIMLNFLQRMSGIATYTY QCVQCVAGTKTRILDTRKTVPGHRLTDKMAVRHGGGTNHRASLSDMVMLKDNHIAMAGGI LPAVEEVRPHLPISIRIEVETSTLEEVQEAIDAGADIIMLDNMDLETMRRAVDLIDGQAE VEASGNMTAERLAAVAAIGVDYISIGALTHSVRAFDISMKIKPIQ >gi|228307988|gb|ACLR01000123.1| GENE 57 62724 - 64343 1414 539 aa, chain - ## HITS:1 COG:RSc2447 KEGG:ns NR:ns ## COG: RSc2447 COG0029 # Protein_GI_number: 17547166 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Ralstonia solanacearum # 10 521 3 517 533 372 43.0 1e-102 MKLQQSPQRYDYIIIGGGLAGLYCAYFLAQHGSVALIARRTIEESNSYYAQGGMAAVTDQ QDSPTDHYEDTIVAGRGLCIPEAVKVLTDEAPDRINELIQMGMTFDSEDGHLALGLEGGH HHRRILHAGGDATGRMVTTFMIEQVRKAQHITIFDHHSAVQVLRSADGSHCQGLVTYDER AHHYDTILASAVVLATGGAAALYYPTTNPPTALGDGLWLASEVGAELMDLEFIQFHPTAL YLPGYASFLISEAVRGEGAYLVDKRGERFMPALHPLAELAPRDVVARSIFLKMQEEGSDH VRLRLRHIDPKRLLQRFPTITEHCRQLGLDITDEIPVAPAAHYTVGGIGVDLNGCTRLPG LYAVGEVSSTGVMGANRLASNSLIECIVFGKRIADYAIAHPTTPTETAALATPTNLPDLS WSLDKEQLYALEQQAKINRQIGDILMSKVGIIRSKAGLTEALQALQHLSDMLAEDAQHSI HAYMTRRRVEVAHMMAHAALLREESRGGHYRSDYTETLPESEAYRTRLLNGQITHQPIN >gi|228307988|gb|ACLR01000123.1| GENE 58 64740 - 65786 1353 348 aa, chain - ## HITS:1 COG:no KEGG:BF2104 NR:ns ## KEGG: BF2104 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 29 346 20 305 306 307 52.0 4e-82 MFSYLRVVIHIKLVYNHMNTSTQSLNLHSKLAWRQSLLSFLLVLCLMPLGHAFMILMELL IAPAVLPYSAFGLGLLGLVIAVCGVFAKKDTPQTLCGLIGGLLLWTGWVEFLFMYYAQRF GAHPEILNGVITTTTTYVQGIAANPVLSIDGVPVQHMHDIKDIVVTRPEYLLMPASFGFW VSILLLYIFNVRTGCNFMLWCQRVLLGKKRDLVVRSGMTRHPAMVTFMETMMLLWTCYLL LMFCYDPRFLGQSHPVTIAVGVGCFIGFFFIFRKQLARKQWGANIRMAIPAVIVLWTPVE ILGRNNLFNEIWIAPLDHVGEMIAILVTFLLIGGYLAWHHKRHAKKGA >gi|228307988|gb|ACLR01000123.1| GENE 59 66145 - 66804 762 219 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470266|ref|ZP_04055170.1| ## NR: gi|228470266|ref|ZP_04055170.1| hypothetical protein PORUE0001_0660 [Porphyromonas uenonis 60-3] # 1 219 1 219 219 405 100.0 1e-111 MQHLTIRAILLPLLLLLGAICATAQVRAITSDGDQVILYPNGTWENLNSRHSPHQEPSTT IGAGASGKRVGILLNRQLLFVLREGQLEDLFIYDSRGQLVYSYREGIYQIPYGWRVEYEP LSERVRQFGPYRFKYQLLSERLEQVGSYQVEYELLSERIRKIGDYSIRYDLLSNRITEIG NIRIEYDPFTERIRGVRGTAPGVDIRLMRDGGGRPQPFL >gi|228307988|gb|ACLR01000123.1| GENE 60 66827 - 67690 356 287 aa, chain + ## HITS:1 COG:all4411 KEGG:ns NR:ns ## COG: all4411 COG0863 # Protein_GI_number: 17231903 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Nostoc sp. PCC 7120 # 11 252 12 253 295 345 67.0 7e-95 MRLFGSSDNKIIHGDALQALSECISDNSVDLVFADPPYNIGKNFAGCLDKWDSDESYLRW CYSWLDLCIQKLKPTGALYVMTSTQFMPYFDLYLRERLDILSRIVWSYDSSGVQAKRYFG SLYEPILFCVKDKRQYTFNASDILVEAKTGAKRGLIDYRKNPPQPYSTTKVPGNVWEFTR VRYRMPEYENHPTQKPIELLERIIKASSNEGDVVLDPFSGTFTTSYVASLLHRKSIGIEL QEEYVKIGLRRLGLSYFPTDLPIKSPDTSLQSRPMSEAVHPCFRYNE >gi|228307988|gb|ACLR01000123.1| GENE 61 67687 - 68799 552 370 aa, chain + ## HITS:1 COG:no KEGG:BF3419 NR:ns ## KEGG: BF3419 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 3 366 2 365 374 434 58.0 1e-120 MKEYAFTSSIKEILKSHFGDEGEDIYDKSLLLQYVNEKTKSANRGSKSRSSFANLYAIYV LVEDYLNQTINKEIEYSKYEGALFSALSKRQRELPFGEKLQNHALNNRVNAEFQKFFPTT NLMPIVRDLKTNRYWVNENLLRVRVGRHTYNIAESLIDILDKYIEVKQQTLKQFIEQCSQ LQAMERLGAEDIYTFISNLLSPKLDARLFEIVSYAILKYSYKGQTIIWGYDMKSLTKEPL TLYKTGRTNANDGGIDFVMKPLGRFFQVTEDLDFRKFFLDIEKVRHYPLSFVVKTEKAIP GILSDLREKALDTYGVERVVEEFMACIEEVINIPTLLDRLTQIIDKDGGRSLLEEIILQS KVEFNYSDDD >gi|228307988|gb|ACLR01000123.1| GENE 62 68867 - 70078 177 403 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163755828|ref|ZP_02162946.1| 30S ribosomal protein S21 [Kordia algicida OT-1] # 308 401 4 97 102 72 37 8e-12 MLTQELEQTLDAFMEYLRLERNASPLTLTTYRPAIESYMESALELATDEWRPSDADRDLV RNWIMQQMDDELSSTTVNKNLSAVRSFYKYLQLRGHVTSNPTRYLKGPKREHTLPSFLTQ AQIEEALATIPIETDNFLSVRDRLIIETIYQTGLRRAEVASLKTQQVDLTAMSLRVVGKG RKERIVPFGTDLREKMQDYITLRDQKVGTSQYFFVTLECRPLSGADVYQVVHKALSVVPG LPRRGAHTLRHSFATEMLNAGAPITSIKELLGHSNLETTTRYTHTSFEQLKQLYHAHPRA QSQVSSMINVHIQSLQFDASEALKDFAKKKIDRLARFDDTISKAEITLRLDKSDATRGKI AAIRLFVPGHDHYAEKGATTFEEAIDEAIDALKRQIDRAKENK >gi|228307988|gb|ACLR01000123.1| GENE 63 70618 - 71805 1393 395 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 393 1 405 407 541 66 1e-153 MAKEHFQRTKPHVNIGTIGHVDHGKTTLTAAITKVLADAGFTEARSFDSIDNAPEEKERG ITINSSHVEYETANRHYAHVDCPGHADYVKNMVTGAAQMDGAIIVVAATDGPMPQTREHI LLARQVNVPRLVVFMNKCDLVDDEEMLELVEMDMRELLSFYEFDGDNTPVIRGSALGALN GEPKWCEKIMELMQAVDEWIPLPERDIDKPFLMPVEDVFSITGRGTVATGRIETGVVKVN DEVQIIGLGAEGKKSVVTGVEMFRKILDEGEAGDNVGLLLRGIDKDEIKRGMVLAHPGQV KPHDHFKAEVYILKKEEGGRHTPFHNKYRPQFYIRTLDVTGEITLPEGIDMVMPGDNVTI DVKLISPVACSVGLRFAIREGGRTVGAGQITSLED >gi|228307988|gb|ACLR01000123.1| GENE 64 72166 - 72366 223 66 aa, chain + ## HITS:1 COG:no KEGG:PGN_1577 NR:ns ## KEGG: PGN_1577 # Name: not_defined # Def: putative preprotein translocase SecE subunit # Organism: P.gingivalis_ATCC33277 # Pathway: Protein export [PATH:pgn03060]; Bacterial secretion system [PATH:pgn03070] # 1 65 1 65 67 76 66.0 3e-13 MKFFKRTGSYIKNCYNELVHKVSWPTRSELINSTVVVMIASVIIAIFVAGVDFVFQQLMQ LVYGLA >gi|228307988|gb|ACLR01000123.1| GENE 65 72570 - 73133 565 187 aa, chain + ## HITS:1 COG:NMA0147 KEGG:ns NR:ns ## COG: NMA0147 COG0250 # Protein_GI_number: 15793175 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Neisseria meningitidis Z2491 # 9 186 4 176 178 128 39.0 5e-30 MSQDSQPMRFYVLRVLSGQEKKVCEYIEAAKSNGTLGSYVRRVLVPTEQVVSQRNGKKVV KERPYMPGYVLVEAALVGDTEHTLCTIPNVIGFLTSRMSDGQLAPEPLRTQEVQDLLGQA DRDAEGAGRFDIEYSVGESVRIIDGPFSDFSATIDEVKSDKRKLKVMVKIFGRKTPLELD YTQVEKE >gi|228307988|gb|ACLR01000123.1| GENE 66 73331 - 73774 744 147 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470331|ref|ZP_04055235.1| ribosomal protein L11 [Porphyromonas uenonis 60-3] # 1 147 1 147 147 291 100 1e-77 MAKEVAGQLKLQIKGGAANPSPPVGPALGAKGINIMEFCKQFNARTQDRAGKVLPVVITY YADKSFDFIVKTPPVAIQLLEASKAKGGSAEPNRIKVAKVTWDQVRTIAEDKMSDLNCFT VESAMKMVAGTARSMGISVTGTKPENL >gi|228307988|gb|ACLR01000123.1| GENE 67 73790 - 74494 1167 234 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470281|ref|ZP_04055185.1| ribosomal protein L1 [Porphyromonas uenonis 60-3] # 1 234 1 234 234 454 100 1e-126 MSKLTKNQKIAASKVEAGKSYSLDEASKLLKEITFTKFDASVDIDIRLGVDPRKANQMVR GTVSLPHGIGKEVRVLALCTPDKEAEAQEAGADYVGLDEYINKIKSGWTDIDVIITMPSV MGKIGALGRVLGPRGLMPNPKSGTVTNDLGAAIKEVKAGKIDFKVDKAGIIHTSVGKISF DPKQIRENAKEFIDTVLRLKPSSAKGTYIKSIYLSTTMSAGIKIDPKSVVSAVE >gi|228307988|gb|ACLR01000123.1| GENE 68 74523 - 75053 868 176 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470291|ref|ZP_04055195.1| ribosomal protein L10 [Porphyromonas uenonis 60-3] # 1 176 1 176 176 338 100 6e-92 MKKETKSTVIEQLHAYIESYPNFYLTNIEALNAEKTSELRRLCNKSGVKMVVVKNTLMRR ALSEIDSVDFAELYESLKGNTAVMFSEVANAPAKAIKAFRSDNKELGRPDLKAAYVQEGF YIGADQLEALVNIKSREELIADIVAMLEGPIQGVLGQLDSAAGTIHGVLDTLAERQ >gi|228307988|gb|ACLR01000123.1| GENE 69 75104 - 75478 584 124 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470276|ref|ZP_04055180.1| ribosomal protein L7/L12 [Porphyromonas uenonis 60-3] # 1 124 1 124 124 229 100 5e-59 MADIKAIAETLVNLTVKEVSELKELLKEEYGIEPAAAAVAVAGPAAGAAAEAEEKNSFDV VLKSFGSAKLAVVKAVKEHAGLGLKEAKELVDAAPANIKEGVDKATAEALKAALEEAGAE VELK >gi|228307988|gb|ACLR01000123.1| GENE 70 75816 - 79658 2445 1280 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 319 1279 386 1387 1392 946 49 0.0 MASKPTNTRKSFASIAHPMEYPDFLEVQLKSFQDFFQLDTPAESRKKEGLFKVFSENFPI EDTRNNFKLLFEDYFVDPPKYSIEECLRRGLTYSVPLRAKLKLTCEDPEHEDFESTVQDV FLGSIPYMTPAGTFVINGAERVVVSQLHRSPGVFFGSSLHNNGTRLYSARIIPFKGSWIE FATDTNNELYAYIDRKKKLPITTLLRAIGYETDKDILDLFGIAEEVPVTLETLQANYGRQ LAASVILKYYDEESEEETGETETFARYNTLVEQNAILDEENAQVILENGIETILLRRDLS TSDQESTDQEVMDYSIIFNTLKRDSANSEQAAYNFIYNLLRNSTPPDDQSAKEIFNNIFF SEKRYDLGDVGRYKINSKLGLDIDPDIRILTAEDIVAIIRHLIKLVNGKAPVDDIDHLSN RRVRTVGEQLYNQFSIGLSRMARTVKERMNVRDSEVFTPVDLVNSKTIASVVNSFFGTNA LSQFMDQQNPLSEITHKRRLSALGPGGLTRDRAGFEVRDVHYTHYGRLCPIETPEGPNIG LISSLCVYAKINELGFITTPYRNVDKGTVSFKDSQLGYYTAEEEEDKTVAQGNAPLSEDG HFVRSRVKARYGADFPVVEPSEVDLMDVSPTQIASIAASLIPFLEHDDANRALMGSNMMR QAVPLLTPEAPIVGTGIERRLVSDSRTQVEAEGDGVVVYVDATKIVVDYDRTEEEELVSF EPSEVTYKLPKYRKTNQSTTIDLSPVCRKGDRVTKGQILTQGFSTQDGELALGRNILAAY MPWKGYNYEDAIVLNERVVAEDLFTSVHVDEYSLDVRETKRGMEEFTADIPNVSEEATKD LDTNGIVRVGARIVPGDILVGKITPKGESDPTPEEKLLLAIFGDKAGDVKDASLKASPSL KGVVIDTKLYSRANRKGGIVATRKINQRYEEELSKLQSALKEELVSKLQIILKKHKATAT DFVDYIGIVKVKAGTRITKSLLLELDYNDLRMSDWTKDEHTNQLVKQTIANYIKKDKVTI ADVNRRKLDETLGDELPSGIIQTAKILIAKKRKIQVGDKMAGRHGNKGIVSKIVRREDMP YLPDGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKLGVKFATPIFDGATLDDLNEWTD KAGLPRGGQMKLFDGGTGEPFDQEATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLG GKSNFGGQRFGEMEVWALEAFGAAHVLQEILTIKSDDVVGRSKAYEAIVRGDNMPTPGLP ESLNVLLNELKGLALSVHIE >gi|228307988|gb|ACLR01000123.1| GENE 71 79702 - 84051 5309 1449 aa, chain + ## HITS:1 COG:SMc01316 KEGG:ns NR:ns ## COG: SMc01316 COG0086 # Protein_GI_number: 15965102 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Sinorhizobium meliloti # 12 1431 17 1386 1401 1311 48.0 0 MAYKTAPKSKTTFSSIRLSLASPEEILAASHGEVTNPNTLDYKTYKPVRDGLFCERIFGP VKDYECNCGKFKRIRFRGTICDRCGVEVTEKKVRRERTGHIKLAVPVAHIWYFRSLPNKL AALLNLKSKDLEAIIYYEKYIVLQSGVSDLEVNTILTEEEYQAKLDEIDQSHPDNYDLPE SDPDKFVAKIGAEALYEMLSNLDLDTLSYELRDRAQTETSQQRRLEALKRLNVVESFRAS KDINRPEWMILKVVPVIPPDLRPLVPLDGGRFATSDLNELYRRVILRNNRLKRLLEQSVP EVIIRNEKRMLQEAVDSLLDNSRKSSAFKGENNRPLKSLSDSLKGKPGRFRQNLLGKRVD YSARSVIVVGPELQMHECGLPKDMAAELYKPFIIRKLIERGVVKTVKSAKRIVDRRDNVI WEILENVMKGHPVLLNRAPTLHRLGIQAFQPKMIEGKAIQLHPLACTAFNADFDGDQMAV HLPLGNEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYITKIRKGSKGSGHTFY GVEEARIAYNEGKLDIHAPINVLIDNVLEDGQLVSKIIETSMGRIMVNENVPTEVGYINE TLGKGALRSIISNVIKVCGFAKTAQFLDKIKNLGYHMAFKGGLSFRLQDVVIPKDKEKLV AEGNERVEEIFAQYNEGFITNTERYNQIIDTWSNVSNKITASLMRQLAQDDDGFNNIFMM MDSGARGSKEQIRQLAGIRGLMAKPQKSGSGGGQVIENPILSNFKEGLSVLEYFISSHGA RKGLADTALKTADAGYLTRRLVDVSHDVVISEEDCGTLRGIEMSDVMKNSTVVATLGERI LGRTSVHDIKHPETGEYIVHAGDEINETAVAAITAAGIETVEVRSVLTCETKNGVCAKCY GRNLATNKLVQRGEVVGVIAAQAIGEPGTQLTLRTFHAGGTASNQETDATVRARFSGTVE YSDIRYVDVERAGRDGNMRSAHIVVNRTAELRILDPKTGVILQHELVPYASTIFFANGAT VSKDDTLLNFDPHNTALISEFSGRLVFENLVEKVTFEYETDESASHKEMVIIRKQGVKNN LIPTAQILDEQGNVLRSYNLPVGAHLVKEDGDMITQGDIITKTPRAISGAGDITGGLPRV QELFEARNPSSPAVVAEIDGTIDFAGVKRGNQEISITSRLGEIRKYFVPLTKQILVQPGD YVRAGMPLSEGAVTPADILAIQGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMR KVQVIDPGDTLLMPQQIVDKNDATEENDKLWGMKVITDAGDSTTMKPGQIISSRKLRDEN SSLKRRDLKPAVARDAMPATTNQILQGITKAALQTRGFISAASFQETSKVLNDAAISGKA DKLEGIKENVICGHLIPAGTGLPEYDKLLVMSQKEHEEIEAQSRQTGSDASYRAKKLDEE KTSETAPAK >gi|228307988|gb|ACLR01000123.1| GENE 72 84467 - 85876 1245 469 aa, chain - ## HITS:1 COG:no KEGG:Cpin_4911 NR:ns ## KEGG: Cpin_4911 # Name: not_defined # Def: spore coat protein CotH # Organism: C.pinensis # Pathway: not_defined # 44 309 138 400 518 135 31.0 5e-30 MRHDSIGRVILLTLGVMLTALLPCRGQDDAELPSDATVRPSQTIPIMYITTADGKPIITK KEYKRATFYIADPAGKVSLGTAAEPLGMNIRGRGHSSWKGDKKPYKLKLDEKLSLMGMPK NKHWALLKFWPPTMAGMKLGQLMGMAWTPSTKPIEVVLNGDYVGLYLLTETIRIGKNRVN IYEQPDNNEDAATIPGGWLVEVDNYKEQNQISFRENDRWIINITYHSPKVLSTAQKNWLT AEFKGLNDDIYAPNKATSRWKDRIDVDAMARFFIIQEVMDNPDGFHGSFYLHKDQGEGSK WVAGPIWDLTCMNREKTDYTFRMKTSYVFAPHWIGELLKDEDFSSVVCKVWREEHPVLSD EWMRYLESCFAPYEEAYERDKQRWTKGDFKPLHSAAEELTTALRRNVDWFDKHLPATPNA IALVVPTAGRHIVYTMSGEVVRIADDYSEAVRDLPQGVYIVDNSKVIVP >gi|228307988|gb|ACLR01000123.1| GENE 73 86058 - 86291 180 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRSEGFFFFRSVFPTNPTSSQGISKYSRGKRQIPPNFEIFLRKNEMKVRKKDFKVPKNFS VLRWIVQNLHRGILRFP >gi|228307988|gb|ACLR01000123.1| GENE 74 86558 - 87703 1388 381 aa, chain + ## HITS:1 COG:MA4292 KEGG:ns NR:ns ## COG: MA4292 COG3291 # Protein_GI_number: 20093081 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 101 254 1388 1542 1995 117 36.0 4e-26 MKQNYLFVFLLSLLCAVSALAQEGGATREITLTEAGTLSQQIPESEYATLQHLTLKGDIY QRDIVFIRKKLTELQSLDLTETKILRGERVVGSGTYFPADTLADYALENMLKLQSVKLPK GLKAIGMKAFHNTALTEIEIPEGVTFLGGYAFAFCKALKKATVPGSVKMIENYAFLGCVA LEEISLGEGMTMIGGDMFNDCKSLPKIQLPSTIESLGGQAFKGCIQFTELTIPAACTKVG AQLLRDCPALKTLTSLAKTAPEASPKSFYPEQYEQIELRIPAEALESYQDSPIWSLFKTI HDLEGKPIPLSIEAPHGVATPTASWQDGYLHIAHAAGLTIAIYDTTGQLLLQDTPAEVIA SYPLPQGLYIIKTPYGALRTL >gi|228307988|gb|ACLR01000123.1| GENE 75 87747 - 89672 2242 641 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470345|ref|ZP_04055249.1| ## NR: gi|228470345|ref|ZP_04055249.1| hypothetical protein PORUE0001_0680 [Porphyromonas uenonis 60-3] # 24 641 24 641 641 1254 100.0 0 MKRTLLLTSALLLILLGIGSSLLAQQTLRTGAPYLPLGHCKYTDPTDKGIGWPIGTFGDR PIGVWARASRSMLKPYEGYQVVGVRIAVSKGVKDAEVSLLNNISERKKIVSKKADLVFGW NEVRFDKPIEINSSLNELIYGYQVLEKNISDQTEPYFVACDNGVGASSEAFYVNVSGGAL DSRSRDNGALLCQLMISGPADKINDRASLTVTRYDKALDASGKLGVSYVARNEGANDINQ MEITYSVGGKVVLTDSRTETIKHIQELQLKTKGISVANGETLTARITKVNGRETNLPGFQ IKIEGVADKSFARKVLLEQFSTENCSSCPGAHRYLDKVLAEETYADHFVWVTHHVGYERD TFSLPESEALLFFYEKQENDGTYSESAPAMLLDRTHTELKHSFDGYDYTMLPVYPSQDEF NRKLLDEAIARPAFVSVDIKEECDPKTRKLDLTISGRAYKESLDADNLYLNLFLIEDDIY SRRQAGAGTADDGGRKPVYQHGVIRQISLGGGGKKLTLDDKGEYTYSTSLNIPKEWSAAN MRIVAFVAKSLKGGARNAQVLNSNETKIAAYRSIAPTPDQEMTVQLYAQDGRIYVSGEGA TIAAVYNMSGELMPNEALLPGIYVAMVETSFGSYMRKVIVY >gi|228307988|gb|ACLR01000123.1| GENE 76 89711 - 91411 1648 566 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470356|ref|ZP_04055260.1| ## NR: gi|228470356|ref|ZP_04055260.1| hypothetical protein PORUE0001_0681 [Porphyromonas uenonis 60-3] # 1 566 1 566 566 1091 100.0 0 MNKVTTKLLLLLCTLVTTLLATPRAQAQDETIRLQSSKYVAKDINGKEHDIDAILSSGKA ILVDFSATWCDPCWALHKLGVLEKIHEMFGPDGTNQIEVLWVEASGEPLEAIYGDVSKFR DQPTKGDWRKDKGGKPVPYPIISDRQLAVTTLGHAIPSFPTFILMGPDRRWVRCDDAVYG RDAQSRYTFDPDFKALKQTLTLFLTQDDKPENVELIGMTKVYLGEKPTLNVLYTSAAPIT SIKCSAPEGVTVTKISNTEFQIEPKQAGTFEITATVANKNGEARGSVSMTVSAPISSFPF VATMDNQEQIDEGWRSIDYDGDGYGFDSILGRGLYGRLKVNVQEGYNAGAENSKDALISW GGFFPIQMDDKGRIQGYEIAAKNELRSAPMVIDANAAKPTFSCYIQHYVDDAKPDQLKVM VAEPGGTPEELLAPQTSTEDWKLIQADLSAYKGKTVYLSLIPVVNGESGIAVDQLRVTMD GTTDVETPTLSLQTSLYPNPASDHITIRTAVGSTIELFASDGTLAATVQTTSAETTISVA QLPAGRYLARITALDGETILRPVIIR >gi|228307988|gb|ACLR01000123.1| GENE 77 92745 - 94244 1640 499 aa, chain + ## HITS:1 COG:CAC3230 KEGG:ns NR:ns ## COG: CAC3230 COG4624 # Protein_GI_number: 15896476 # Func_class: R General function prediction only # Function: Iron only hydrogenase large subunit, C-terminal domain # Organism: Clostridium acetobutylicum # 174 408 95 335 450 134 36.0 3e-31 MTYINNVMIVRHKLLSTMVERWRKDQLVKTIDRIPLELSPRKNRNVLGRCCPHKERAVWK YKMFPLLGFDMRDEEDELTPLSEYANTALHRPQPTKENVLCVIDEACTSCVQINYEVSNL CRGCVSRACSSNCPKSCISFQKNGQAQIDHDVCISCGQCHKNCPYHAIVYIPVPCEESCP VGAISKDEDGIEHIDESKCIYCGSCLNACPFGAIFEISQVFDVLGAIERGEQVVAIVAPA ILGQFKATREQVYGAIKKIGFHDVIEVAQGAMDTVSHEGKELVEKIEAGQAFMTTSCCPS FYELVDKHAPGLKPFVSSSHSPMVYTAERARKLYPDSKIVFFGPCVAKRKEIKRPNVDVD MVVTFEELGSILEGLDIDINTVEGYKPAVESVREAHAFARNGGVKDAVISYLSNTEEYKD FVERLTAEEIAGMDKKAVAKLKAYGKRGKADTQFVEVMACLGGCVTGPSAFNDVLAGRRQ LLKEVEKIDLTYANYKEQE >gi|228307988|gb|ACLR01000123.1| GENE 78 94219 - 95268 761 349 aa, chain + ## HITS:1 COG:CAC1631 KEGG:ns NR:ns ## COG: CAC1631 COG0502 # Protein_GI_number: 15894909 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Clostridium acetobutylicum # 21 315 21 310 350 263 46.0 3e-70 MLTTKSKSDTLDHVATASIPELKALLDSNDTHLEHELQVRAKTLAELQFGRRIYLRGLIE ISNVCRNDCYYCGIRSGNERVTRYRLTADEVMSACERGYEIGFRTFVLQGGEDPYWRGER LVSLVRNIRTSYPECAITLSLGEMEYAEYEALFHAGANRYLLRHETYDKEHYESLHPSTM AQEHRLQALRDLKQIGYQVGTGVMIGSPGQTTAHLAQDLDFIHRLQPAMIGVGPFIPHED TPLGTYPAGSLSMTLRFLALCRLLNPRALIPATTAVATLHPEGRLAAIRSGCNVVMPNLS PLNHRADYALYNNKVYSGSEAAEGVALLQAQLDTIGYQIDWGRGDAPAS >gi|228307988|gb|ACLR01000123.1| GENE 79 95281 - 96699 1370 472 aa, chain + ## HITS:1 COG:CAC1356 KEGG:ns NR:ns ## COG: CAC1356 COG1060 # Protein_GI_number: 15894635 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Clostridium acetobutylicum # 3 472 2 472 472 645 66.0 0 MSYNKQSHDACDFINHDEIIDTLRYAEQHKDDEKVISDILRKATEMRGLDHREAAVLLLA EDPATRQRVSQLAEQIKLRFYGKRIVLFAPLYLSNYCINGCVYCPYHAKNRTIPRHKLTQ EQIRQEVIALQDMGHKRLALEAGEDPRNNPIEYILESIQTIYSIHHKNGAIRRVNVNIAA TTVEEYRMLHEAGIGTYILFQETYHKEHYEELHPRGPKSDYAYHTESMDRAMQGGIDDVG LGVLFGLSTYRYDFVGLMMHAEHLEATFGVGPHTISVPRICPADDISLESFPEAIPDDTF LHIIAVARLAVPYTGIIVSTREREAVRQRALHVGVSQISGGSRTSVGGYAQTTEAAHSEQ FEVSDPRTLDEVVYWLLQQGHIPSFCTACYREGRTGDRFMSLCKSGQISNCCGPNALLTL QEYLEDYASPTTRELGLEMISQQLPTVPNERVRAIAQQRLQQIKAGERDFRF >gi|228307988|gb|ACLR01000123.1| GENE 80 96714 - 97910 862 398 aa, chain + ## HITS:1 COG:CAC1651 KEGG:ns NR:ns ## COG: CAC1651 COG1160 # Protein_GI_number: 15894928 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Clostridium acetobutylicum # 9 398 11 397 411 265 39.0 1e-70 MASRKDASERKRIVLVGQVNSGKSTLYNRLLRQERSLVSDQAGTTTDSVEKLFELPSVGP VLLVDTPGLADETPLGAERQRVTQHALSSADLILYLLSCEESLDTPIITALRKASVPTLP IIARADLPEQSSWLERQEEIMRCFGHTPLTLRQDDEKSLDTLLEAIKRTLSNESEPAPSL LGNLCQAGDLVLLVMPQDSSAPAGRLILPQVQTIRALLDRGCHALCVTPEQLPAALSQLA TPPQLIITDSQVFATVEPLVPEDCRLTSFSILMSAQRGDLQRLVAGAGAIGRLTPASRIL IAEACTHAPEGEDIGTVKLPRLLRKRIGETLTIEHVSGRDFPEDLTPYDLVIHCGGCMFN RRMLISRQDLATAQQVPMTNYGLAIAYLTGILDKVTLP >gi|228307988|gb|ACLR01000123.1| GENE 81 97975 - 98193 94 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKPRDGGNRKIPPWISWNIHGGTKKFFRTLISFFRTFISFFRTFISRFRGEFSFAPWSF SISSGEMEISRD >gi|228307988|gb|ACLR01000123.1| GENE 82 98227 - 99219 1247 330 aa, chain + ## HITS:1 COG:mlr7556 KEGG:ns NR:ns ## COG: mlr7556 COG0463 # Protein_GI_number: 13476277 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mesorhizobium loti # 17 322 4 301 326 238 41.0 1e-62 MTDHNSLETTAPERPDISVVIPLLNEAESLPELYERIVAHTAEVGLSYEIIFVDDGSSDD SWQVIKQLAARDAAVHAIKFRRNYGKSPALQCGFAKACGRVVITMDADLQDAPEEIGGMY NMIVHEGYDLVSGWKKKRYDPLSKTIPTKLFNATARRVSGIKNLHDFNCGLKAYRAEVVH SIELYNDMHRYIPYLAKNAGFAKIGEQVVHHAPRKYGHSKFGLDRFFNGYLDLLTLWFTH RFGRKPMHFFGFWGSLMFLIGFIALIVVLSFKLSALISGTPAPLVTDRVYFYISLAAMII GVQLFCAGFIGEMITRRDPNRDIYNIETEL >gi|228307988|gb|ACLR01000123.1| GENE 83 99216 - 99737 659 173 aa, chain + ## HITS:1 COG:CAC2508 KEGG:ns NR:ns ## COG: CAC2508 COG0778 # Protein_GI_number: 15895773 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 5 150 3 147 182 110 41.0 1e-24 MTKTFDQIISTRRTVRHFDATKPMTREELMPILEAGRLAPSAKNFQPLRFVVVLSEEERT KLHAISQQPWFYHAPSYIVIIGDHDKAWQRPHCDLTYVDTSIALTHMLLKAEDMGLGATT VAAFDQEICRELLQIPEHEEPILILAVGHPDPAFAGKEGNPRRKTMEELVTFI >gi|228307988|gb|ACLR01000123.1| GENE 84 99753 - 100754 963 333 aa, chain + ## HITS:1 COG:PM1334 KEGG:ns NR:ns ## COG: PM1334 COG1477 # Protein_GI_number: 15603199 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Pasteurella multocida # 4 294 7 307 346 164 34.0 2e-40 MRRTVTLLLLSLILLSSCHQEAPYRSAEGLIFGTLYRVTYQADQDLSDQINEALQEVNRV ANPFDSTSMIYAVNNNLSMAVDSTFYAIYSVARRVYEQSGGTYDVTIAPLVNAWGFGFEK SYPLTQQQVDSLMELVGMDKVSCTPTELTKANPAMELDFASVAKGYASDLVGEKLRKAGV TNYLVEIGGEIAYSGRNPRGAPWRVGISRPDLDSLGISQELQEIIDLPGVRGGLATSGNY RNYKVAADGRVYGHTISALSGYPAETDILSASVIAPTCAEADALATAFMASGYEGSEAMR KRLSPDISFLLFVSAGDSLTFTTIASPSFPRSH >gi|228307988|gb|ACLR01000123.1| GENE 85 100822 - 102453 1617 543 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470354|ref|ZP_04055258.1| ## NR: gi|228470354|ref|ZP_04055258.1| hypothetical protein PORUE0001_0693 [Porphyromonas uenonis 60-3] # 1 543 1 543 543 1046 100.0 0 MTQSSLPNSAVNDQPNYPDEGSRPTFSQILRLILRQWYWFVIFIAIFVWLGCSIVKYRPL GRQTYYMQLSSREPHEPTEPTMQLGDPIPKTSPWAPEYIASLLNTTTAVLEAGKRIDFQV DYWVKTPFGMRDYYNQTPIIVRFGNLLPTDKLYCIARLDDPVHPKEVTMSAFSGVVQGQP LYEPYDVVIPVGTTQETPVGPITVTLDDPAQHFPYHIDQQYTEIPITYTSLVEARDIYET EMQVTMKKADLPLSSVMRVELLSGRSERRCLSLLNAMYVVTDSLGWVEQLTDEGHVDSLG QFVGTVPPTGLSPFRLVDKPRELREIEPDLFVIVGMGLLGFLIPLLLLYIYWAILGAIYY VCELPRLLRSRLTLDLQRRHKGKTLYPHLEELCALVSPQGEPRAIQLVTPSGTKYHRQLA SELQQALQQRGISCAVWYLDLANQKKASKGSNGVYHTTITPGLIGSSAFEQQLKQLQTQH QLTIIVPPALTKDPTAYLLNSLEQSLYCIYRGSTRIGAIKRVVHQLQIRQQLDRSHIHTL WVE >gi|228307988|gb|ACLR01000123.1| GENE 86 102490 - 103167 342 225 aa, chain + ## HITS:1 COG:BS_yqeJ KEGG:ns NR:ns ## COG: BS_yqeJ COG1057 # Protein_GI_number: 16079618 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Bacillus subtilis # 29 209 4 174 189 109 34.0 5e-24 MTTEGRDSKEKPPGLTNLRPATSDVSGAVGLFGGSFDPLHIGHLALCDYLLAYPELSGVE HIWFIPTPQNPLKEQETIFSYEWRCRMIEQAIQSDPRYELCTVEAILPEPHYTVDTLTAL EEHYPHCAFSLIIGADSLASLSQWHRHGELLDRLPLVVYPRSGYDLSQLAAQYPTAEIRL MSDAPQIEVSSTAIRQALHEGRDLRHWLPQPELYDTLSKVTKHHE >gi|228307988|gb|ACLR01000123.1| GENE 87 103160 - 103543 574 127 aa, chain + ## HITS:1 COG:no KEGG:BDI_3810 NR:ns ## KEGG: BDI_3810 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 4 123 2 120 129 65 28.0 5e-10 MNEDRMVQLASYQVEEEALELLDLLSDHGIPATIRNSYSARLLSSFIDIGGFIVEVPESA RPQIQELIESGELILPDESDEPTTRLTQWVSKLPLPDQWSLEKRLTMLLLLLIAIGIIIA LAVLVVS >gi|228307988|gb|ACLR01000123.1| GENE 88 104167 - 104688 460 173 aa, chain + ## HITS:1 COG:BMEI0609 KEGG:ns NR:ns ## COG: BMEI0609 COG0262 # Protein_GI_number: 17986892 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Brucella melitensis # 5 165 8 169 172 132 43.0 4e-31 MEIWIIVATARDRAIGRDGTMPWRLKDDLRRLKATTTGHAVIMGRHTWDSIGARPLPNRY NIVVSRTLPEGDAETHYVASTLEQALQHCQQAGYDRVYIMGGGVLYKSGLPYATHLNLTM VDTVVPDADTHFPEINLSEWSKLEEAHYPADERNDYPVTQTLYKRIETAKRYE >gi|228307988|gb|ACLR01000123.1| GENE 89 104681 - 106060 1737 459 aa, chain + ## HITS:1 COG:XF2222 KEGG:ns NR:ns ## COG: XF2222 COG0124 # Protein_GI_number: 15838813 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Xylella fastidiosa 9a5c # 1 455 1 460 466 241 36.0 3e-63 MNKPSIPKGTRDFGAEEMRRRNYIFETIRSVFALYGFEQIETPAIEQLTTLTGKYGVEGD RLLFKILNSGDYKAGIDAETFTEESPAALAARLCERGLRYDLTVPFARYVVMHRNELTFP FKRYQMQPVWRADRPQKGRYREFYQCDADVIGTDSLMPEVDFVYMIDEVFRRLKLRTILL LNNRKILAGIAEVIKAPDRLAQLTICMDKLDKTSVEAVLADLVESGFAPESLEPVRKVLT LEGSNLDKVAVLKQLLADSEIGLKGLEELEYVLDHVDTSDLMTELTFSPSLARGLDYYTG AILEVKSLDAPMGSISGGGRYDNLTGIFGLEGVSGVGISFGAERIYDIMLSLGMFDTAME PEERIMIVNFGEEELQKLLPIAHQLRRAGLATEVYPSADKMKKQLSYANSRGCRHVIIAG SQELNEGKVSIKDMTLGTQQECPLNEIVSRLRESLSVNH >gi|228307988|gb|ACLR01000123.1| GENE 90 106138 - 106728 861 196 aa, chain + ## HITS:1 COG:ZfklB KEGG:ns NR:ns ## COG: ZfklB COG0545 # Protein_GI_number: 15804798 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 EDL933 # 3 196 63 259 259 187 48.0 2e-47 MPQDEVSYALGLSIGQNFKASGIKAITSEDFIAGLQDALAEREPQLTNERAREVINQLFT RLQQEEAELNAAAGKEYQEIMRHKSGVVTLPSGLQYEIIKEGKGAKPKATDKVRVHYHGT LINGVVFDSSVERGEPAEFPLNAVIPGWTEILQLMPVGSKWRVVIPSELAYGSRGAGDVI RPNMTLIFEIELLDIV >gi|228307988|gb|ACLR01000123.1| GENE 91 106744 - 107469 911 241 aa, chain + ## HITS:1 COG:NMB1567 KEGG:ns NR:ns ## COG: NMB1567 COG0545 # Protein_GI_number: 15677418 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Neisseria meningitidis MC58 # 29 240 49 265 272 160 42.0 1e-39 MTHRILTVALTLLVSVGALSAAEPPRLISSADTAAYALGVANGVGFGQNLTQMPGNPINK ELLLAGFTAAFLEQPTVMTNEEAQAFLSTYFQKLEEQMAQETKERNEAFLKSNGERPGVK TTQSGLQYEIIKEGKGPRPTVEDTVRVHYTGTLIDGTKFDSSVDRGEPAKFGLLQVIPGW TEGLCLLPQGSKAKLYIPARLAYGERGAGRLIPPNATLIFEIELLEVIKGQPIPLATPTE K >gi|228307988|gb|ACLR01000123.1| GENE 92 107514 - 108371 1284 285 aa, chain + ## HITS:1 COG:ECs5185 KEGG:ns NR:ns ## COG: ECs5185 COG0545 # Protein_GI_number: 15834439 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 77 279 49 258 259 125 38.0 6e-29 MKKSILSLLAVVAMVCAFASCNKTAQKSETNDELSAMSDSVAMIQGYMTGQQLAQQFMMM AMQGMPVDSMEFLKGFKKGITDTTKFSYYAGQIQGVQTAMSLVKEGIDVKLFTEYLEAAL KGDTTKLGMDQEAAYTYVQNYYQKKQEIENKEKFGKNIEAGKKAIAEFSKQEGVITTKSG IAYRYASKGTGKSPVDGDKVKVTYRGTLIDGTEFDKSEEPVELSINQVIPGWTELLKLMK VGDQITAYIPYDLAYGANGSGSSIEPFSTLIFDIKLLEVAPAEKK >gi|228307988|gb|ACLR01000123.1| GENE 93 108745 - 109953 1106 402 aa, chain + ## HITS:1 COG:PM1901 KEGG:ns NR:ns ## COG: PM1901 COG0156 # Protein_GI_number: 15603766 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Pasteurella multocida # 7 393 4 378 387 325 47.0 9e-89 MSHFESHIEQILATLRDEQALRTLTPIEPLERGRYAALDDAHPQPLINLNSNDYLALHDA SCHFADEADLTNSLQALSAGDLGSTSSRLLSGDRAVMHQLEELIAKSLQHETALLFNSGY HANVGILPALKLPGLVVIADKLIHASMIDGLRLSGLPFERFRHNDVAQLQRLIEKHHSAE SCQHIIVMAESIYSMDGDLAPLQELVALKQQYPKVALYIDEAHAIGVRGAHGYGLCEELG LLSEIDLLVGTFGKALGSMGAYVACSEAVRTLLITRSRSLIYSTMLPPLIIQWVLAVWQA LPTFTQRRAHLAKLQQLLTDELASLPAQLLPTPHSHIIPLLCGSRERARAVAQALHEEGY FIRPIMSPTVPVGSERLRISLTAGLTTAEVRQLCQIILTHLA >gi|228307988|gb|ACLR01000123.1| GENE 94 109959 - 110672 819 237 aa, chain + ## HITS:1 COG:PM1902 KEGG:ns NR:ns ## COG: PM1902 COG2830 # Protein_GI_number: 15603767 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pasteurella multocida # 6 233 4 214 215 151 39.0 1e-36 MQYTFQRNSDQGPSRQLILYFCGWGMTPDTVSHLTLPDQCDLLSLYDYRTLELSDDLADL PWSSYQTVTIVAWSLGVWAAEQVLPHWSALPSVRRLIAVAGSPYPMHDLWGIPKAIFIGT LEGLTDENRQRFNRRMCGGKRYKQLYEILSERPTAELRDELQAVYDSITATEEPETKPHS RLAWDLAIIGAHDQIFPAINLSTLWQALHVPTKLLPDGYHYLFDLWHSWRELWECLE >gi|228307988|gb|ACLR01000123.1| GENE 95 110608 - 111486 723 292 aa, chain + ## HITS:1 COG:PM1903 KEGG:ns NR:ns ## COG: PM1903 COG0500 # Protein_GI_number: 15603768 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Pasteurella multocida # 39 285 9 247 251 124 33.0 2e-28 MGTTTSLICGTRGGSCGSASSNPTKPNELYHSSVPMTSLAHQFDRAASHYNEAAEPQRLV IDRLVQLIKEHLPQAERHFAHAFEMGTGSGLLTERIDQLLEVDHWTLSDLSPALLAQVPR LRDPYPEMRVGDASELSLEGLGIDLFVSSSAIQWLSDPCAYLQRIVRELSGEATIAISTF GPDNLLEIRQLTGQGLRYPSLATWHCTLQELGYPYEIHTERLVIPFADPLAVLQHLHHTG TAQLPNAPQQIRTPNQLRRFTKEYITTFADKTGQVPLTFQPIYIIINKHHTV >gi|228307988|gb|ACLR01000123.1| GENE 96 111483 - 112514 1468 343 aa, chain + ## HITS:1 COG:SMc03851 KEGG:ns NR:ns ## COG: SMc03851 COG0526 # Protein_GI_number: 15966987 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Sinorhizobium meliloti # 194 336 45 184 202 77 34.0 4e-14 MKRIISLSSLLVVLGSLLILSSCNRGKKNTLQLHGLEGNLSGMTAYLYDETDTTKTPIDS IVIRDTVASLSLDKLKKGYLYLLSCEGTPLNAQFVYEETSLDYNLSDGRISGSPANDASN AFEQDIQVIMQADSIDQAAGQKIIRKYVAEQKNNPLVLRAIQYAMYLFDDLSEFQKPLEE MGENVKRLPAYTTLTEMIQGMINTKPGKSFADFEGITTDGERVKLSDYVGQGQYALVDFW ASWCGPCRREIPTLIEMHKKYKDKGLLVLGVGVWEDSHDVHLQAVKELQIPYPQIYDDQN NHATSLYGIMGIPQIMLIGPDGVIMQRDLRGEQIDEILSQIYK >gi|228307988|gb|ACLR01000123.1| GENE 97 112968 - 113765 742 265 aa, chain - ## HITS:1 COG:lin0319 KEGG:ns NR:ns ## COG: lin0319 COG1235 # Protein_GI_number: 16799396 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Listeria innocua # 3 244 20 257 276 148 33.0 1e-35 MSLASGSTGNCYYLEHDGQGLLIDAGIALYDIKAGLEQASLSIEHDVQAILLTHNHADHA RTVGKLANRYQLPVYATLPVQCGLDHMRGMERIQHDRRYAIEPEVPFELIGLVVTPFSVP HDSADNVGYHISSEDGFSFTLATDIGHLTPTIERYASMAHHLVLESNYDTEMLRIGKYPP FLKKRISGPLGHLSNAESVEFLCRIWKPTMRNVFLCHLSKENNHPELVRKTFDIRLFAEG IRVGKDVYVTPLQRNHCSPMYLLET >gi|228307988|gb|ACLR01000123.1| GENE 98 113774 - 114829 1104 351 aa, chain - ## HITS:1 COG:YPO2161 KEGG:ns NR:ns ## COG: YPO2161 COG0252 # Protein_GI_number: 16122393 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Yersinia pestis # 16 350 8 335 338 269 46.0 8e-72 MTTDQDTTTALPHLKVIYTGGTIGMVQDIETGALKAFQFDYLREHVPELDQLHCTFDIEQ CDPPIDSSAITPDLWVWLGEMIQREMEAYDGFVILHGTDTMAYTASALSFMLQGLDKPVI LTGSQLPIGRLRTDGKENLITAFEIALARRADGSPMIPEVAVYFEDYLYRGNRTLKYSAE HFEAFASPNYPHLAFAGIDIKYSPSVIGFEEPDLSQAWRPAFDGHVVVLKLFPGLSASLL DHILRMPDLRGVVLETFGSGNAPTDEAFLSAIKGAVARGITIVNVTQCYSGSVVMGRYET GNVLSQTGVIGGGDMTTESATTKLMYLLAQDLSQAEVARLMQVSLRGELTI >gi|228307988|gb|ACLR01000123.1| GENE 99 114996 - 115388 143 130 aa, chain - ## HITS:1 COG:lin0618 KEGG:ns NR:ns ## COG: lin0618 COG0607 # Protein_GI_number: 16799693 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Listeria innocua # 28 117 3 89 99 62 35.0 2e-10 MIRTLYYCIIMGVLSMLIGSCRVAREIKSVDAATFKAEVSSATVQLLDVRTADEFAKGHL EKSINIDVHESHFTEMVKERFDKSQPIYLYCRSGKRSMMAAQALAKEGYQIVNLKDGFLG WLDAGYPAQE >gi|228307988|gb|ACLR01000123.1| GENE 100 115590 - 117758 1781 722 aa, chain - ## HITS:1 COG:alr0397 KEGG:ns NR:ns ## COG: alr0397 COG1629 # Protein_GI_number: 17227893 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Nostoc sp. PCC 7120 # 41 722 186 865 867 273 30.0 6e-73 MRYLELSRWIRCVALSLLTSTSIGLTAMAQNEVHNEVALDEVVVTAHRTPEVKSQSATTV TIVTRKELAELNKTMPDMQAIVGFLVPGMASTGNTTSERSNTLRGRSVLVLIDGIPQTTP LRATSRDLRTIDPTAVERIEVIKGATALYGNGANGGIINIVTRKNRNDKPFGGQSYIAMQ DHSLLSNKTQSFGYRLNQQLYGKVGGFDYLVNGVIGQTGSSVDGDGVYLSPRYGLGDTRT YNALAKVGYQISETARIEGMYNFFRTVQNSPLIASGGKYLESPRIGIKGDQPKEAIPEGM AYNHNAYLRYTHKNIFSGTNFEATLQGRAVKVVTDYRIHNEKKPRWEGTSGQATIEAKQI GAKAQLDSKLPLSEQVFTKLLYGIDFTMDRTGQPLVDGRYWVPEMTALNFGPFVQTKTTI GDLLNIKVGARYDRIDVHVPDYEVLPKKAGVERTKVQGGVLPYNNLSLNGGVTLNRWRVF QPFLAYSQGFSIYDLGRTLRDAKSDVLSKIETSPVKTHNVEVGFYSTIRGLFGEASRLET SGAVFYTYAALGSDLKSVDGFWVVDRSPQRILGGELSMDATINRQWQTGVGFSMMEGKKY VDGSWDHYMGGQSIPPMKLTAYINCRPTKHSYIRLYGMYTGARDRFAANDKGKYAEGEGK VTPVTLLHLNAGLTVDKFTYTLGIENLLNTTYYTVQSQLVARDNEYTHGNGRVINLSMTY RF >gi|228307988|gb|ACLR01000123.1| GENE 101 118265 - 119041 878 258 aa, chain + ## HITS:1 COG:no KEGG:BVU_1221 NR:ns ## KEGG: BVU_1221 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 26 247 16 236 251 249 54.0 9e-65 MHTLHCPSLKWLILLMILVPSYMAGSDVSLWDIPPTGHRVTVVPSSAERQQINQLYQQMG LEGRLSFEAFSLGVRGYNQIPNKHRSRLTIVDFSKPSTQERMFVIDMEQGKLLYATLCAH GRGSGENYATSFSNQPDSHQSSLGFYLTNETYTGSNGYSLRLDGLERGYNDQARARAIVV HGAAYVNDQIIRQGRLGRSYGCPAVPRALARPIIDAIKGGSVLYIYANRPDYLAQSMVPR SEMDRTLTNQDSRTRLIN >gi|228307988|gb|ACLR01000123.1| GENE 102 119038 - 120666 1342 542 aa, chain - ## HITS:1 COG:YFR015c KEGG:ns NR:ns ## COG: YFR015c COG0438 # Protein_GI_number: 14318537 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Saccharomyces cerevisiae # 5 502 8 574 708 177 28.0 6e-44 MSDRYFISEVSWEVANKVGGIYTVLSSRAGEMMLRHGAEQVLFVGPRLRPLEEMVDFRAE TFCITLPGHISLLGVELPITQGYWLTPGGEAQTILVDYTPLATVRDQLYYLMWQHYGIQS DLGYGDYDDSCLFAVAAAATLLAVTPQLALPGSQPIAIYNEWITGMGLLYHRLQQPNLHS LFITHATTVGRSICSNGKDLYRYFAGYHGDQMASELHVEAKHALEKAAAHTATIFATVSE VTALECTQLLERTPVVLPNGFHALATSRFKTKARQRLIDAASQLYGKTFDPKGTTLVATS GRYEYRNKGIDLIVNSLESLLQQQAKLSSDLILYFFIPAWVAEPRADLAYLLSDPNPESS TTPLEYPYLTHWLHNLREDTLAGHLGELLRRGATAQHIYPIFVPTYLDGHDGILGLPYYD LLSALDLTLFPSYYEPWGYTPLESIAYGVPTVTTDLSGFGQAILEFYGEPATDSLQHGVQ VIPRRDHDDAFVTQALAMILEQATAGLPKACYKQARKTASQALWTHYYDYYIEAYRQMMT LS >gi|228307988|gb|ACLR01000123.1| GENE 103 120659 - 121258 507 199 aa, chain - ## HITS:1 COG:no KEGG:PGN_1645 NR:ns ## KEGG: PGN_1645 # Name: not_defined # Def: putative dipeptidyl-peptidase III # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 18 184 687 855 906 96 40.0 4e-19 MPSSPIDEETIATQLAAIRAALRTRMDGSVAQSMRESGLDYRYNWGWTRGYLLELAAQYQ PSRQLAEALRDTSVRELLILSTMLFPREELTEQDVEAFLEKATNVELQEQLAFNLLSYVP LAIRWAEEVVTDRASDEAKLYVALLAIANYTKRQPEKPLPEKLTEVLDSYVSAEELPMHC RRVAYDLQVTLEERTASNE >gi|228307988|gb|ACLR01000123.1| GENE 104 121251 - 122066 1432 271 aa, chain - ## HITS:1 COG:BS_pnp KEGG:ns NR:ns ## COG: BS_pnp COG0005 # Protein_GI_number: 16079406 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Bacillus subtilis # 5 233 4 233 271 291 61.0 1e-78 MDFQKYQQAAEYIKSKISAQPRVGIILGSGLGNLADEIANPTVIPYSEIPNFAHSTAIGH KGNFISGTLGGVPVVAMQGRFHYYEGYPMEVVTLPVRVMKLLGIEILIVSNAAGGINPNF HVGDLMIIRDHINMLPNPLIGPNDENFGVRFPDMTRAYDRELIALAETIAQEQKLTLQKG VYVSLTGPSYETPAEYKYWQTVGADAVGMSTTPEVIVARHAGIRVFGMSVITNEGWHFEG DYTNDGDEVVAAANAASKRMGALIAELIARA >gi|228307988|gb|ACLR01000123.1| GENE 105 122099 - 123370 1204 423 aa, chain - ## HITS:1 COG:AF0550 KEGG:ns NR:ns ## COG: AF0550 COG0402 # Protein_GI_number: 11498160 # Func_class: F Nucleotide transport and metabolism; R General function prediction only # Function: Cytosine deaminase and related metal-dependent hydrolases # Organism: Archaeoglobus fulgidus # 4 396 2 393 422 336 45.0 5e-92 MSSILIKESLIGGATQDLLIVDNRIDKIGTDLLPIDEETIILDGRDKAVVPGLCNGHTHC AMTLFRGYGDDLPLQTWLEDYIWPVEAHMTEEDIYVGALLGCVEMIQSGTTCFLDMYTAP EATARAVLETGIRANLSYTLFDRGDAERAQLDRDNCYRYEQLFAKLPERICWSVGPHAIY TVSGDQLHFAKEFAEEHEIPIHLHLSETEREVKDCIAEHGTTPVRYLEQIDALSPRCIMA HSLWLDDEELDILARHGCTLVHNPASNMKLASGGRFRYEEMKERGIPVAIGTDGCSSSND LDMYIAMRMASLLGKVWRYDPTAVCAPDIYRSATEVGYAMLGLKGGRIEEGYLADLCLID LKAPSMVPCHNLTSNLVYAGSSTIVSTTIVDGAILMRDREIVGMERIIEMARRTAHDLLH RKG >gi|228307988|gb|ACLR01000123.1| GENE 106 123377 - 124735 1689 452 aa, chain - ## HITS:1 COG:DR2025 KEGG:ns NR:ns ## COG: DR2025 COG0624 # Protein_GI_number: 15807020 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Deinococcus radiodurans # 18 441 18 440 459 426 51.0 1e-119 MANIKEYIAEHEDRFHEDLYGLVRIPSISAQSEHKADMQRAAEYLRDHLLSLGVQEAEVM PSEGNPIVFGHYKQPGATKTILVYGHYDVMPVEPLELWESQPFEPEIRDGRIYARGANDD KGQIMIQLKGFETAKALGLVGVNVKFIFEGEEEIGSGSLSPFCREHKDLLAADVILVSDT TMLSEETPSITAGLRGLAYWQVEVTGPNRDLHSGHFGGAVANPINELCKIIAQLVDDKGR ITVPGFYDKVLPLSDEERAMIRKVPFSEEDYCRALDIRETQGEEGYITLERNSCRPSFDV CGIWGGYQGEGAKTVLPSKAYAKLSCRLVANQDHEEISRLMKAYIEQIAPKSVHVKVTPM HGGAGYYCPLDLPAYQAAAQAVEKAYGVAPLAIRSGGSIPIIAAFEEILGLKTVLMGFGL EKDAIHSPNESFSVRVFRKGVEAVAEFYRLFN >gi|228307988|gb|ACLR01000123.1| GENE 107 125102 - 125452 527 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470352|ref|ZP_04055256.1| ## NR: gi|228470352|ref|ZP_04055256.1| hypothetical protein PORUE0001_0718 [Porphyromonas uenonis 60-3] # 12 116 1 105 105 200 100.0 2e-50 MRFVYITCNVSMLEQMESLLRELEISVYQVIPKALAESNFDIPHKDTAVWPGFNACLLVQ EADTSKGDALLERIREMNAQAYNNSELVAAYLWSVDTYVAPESIMSVQERDPLSGA >gi|228307988|gb|ACLR01000123.1| GENE 108 125454 - 128594 3536 1046 aa, chain - ## HITS:1 COG:AGl494 KEGG:ns NR:ns ## COG: AGl494 COG0841 # Protein_GI_number: 15890354 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 1039 1 1027 1048 475 30.0 1e-133 MKLPEFGVKRPIAAAMIFVAILVIGVFSLTKLPLDLMPNMEFPSLTVITVYPGASAIEVE EQVSKPLEAVLSSAENLVEIKSISKENVSFIQLRYEWEEDITAAANNARDLLELVKSRMP SQAYTPIIYKINASMMPILGYAVNADENYNGLEEIVEDQIASALRKVDGVGTVIYLGQPQ REIRVEIDPTRMQAYGMSVAQLSMMLKANNINVPSGFVTESAYDFSVRMPGKYESVEELE NTVIKAFNGKVVRIKDVATVRDTFKETDASAFNHVGKGIALLVQKQSGANTVDVVNAVRA EIADIQKDLPSDVQIFEVIGSDELVTSSINNLSSSIWYALIFVTLVVLLFLREWRSSLIV FLTMPVSLISAFIVMNVLGYTINIFSLVALVIAIGMVVDNAIVVLENITQHIERGAMPKQ AAMFGASEMGLAIAASTLTTIVVFLPLVFMGGIVGVMFKQLAVLTVTCMITSLFTALALT PMLSSVLLKPAPRGGKGKKHGKLYNWSERMFQRIERVYHDFLGWAVFHKGITLVSALVIF ALVLLLGKAVGTDYIPDIDAGSVSIQFETEQGTSHTLTEQVGNQIVQLLQDHVPEIAEGG IASITGQTDDGVLTAVGFKEGKNIGTIFCHLKPVDERKRSSQQIADDIRPLIEAIPEIEK VTVSGGSAMATALTGNRAPIEFVVYGKDIDQMNQVAFEIERKAKECSEFTNVEALVSAGN REVHILVDKDKASQMALNPGIIGIQVRENLYGAKAGAYTEDGTDYDIRIQYAPEYRNSIS KLREMQVTNLLGQQIPLIAVADIQEKEGPVQIERLTQQRYVKVTANLNGISLGDGAKKAE QIIADLDTPQGVTVSLGGQVEDQGDTFSSLTVIFVIGLLLVFMVMAAQFESLVDPFIILF AIPFTLVGVILAFLITGTTLSVVTFIGLIMLVGIVVNNGIVLVDYSNMLVRRGYTIRDAV MESGRSRLRPVLMTSMTTILGMLPMALSRGMGKELYAPLGITIIGGLLISMLVTLILVPT AYAAVHQHKLNKERRISRLRKQIKKK >gi|228307988|gb|ACLR01000123.1| GENE 109 128599 - 129678 1363 359 aa, chain - ## HITS:1 COG:VC0165 KEGG:ns NR:ns ## COG: VC0165 COG0845 # Protein_GI_number: 15640195 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Vibrio cholerae # 43 358 43 355 368 108 29.0 1e-23 MHTKELKSYLLPTILLLLTIGTTTACNKQGDQDQESEADKVIPVTIAQAKEMTFTPSIRF SGTAEASKSASLGTALPGKVERIRYSKGSFVPKGAVIVEMSDEMLLQARVENEAIKRDFD RVTRLREKESISQMDYDHVKAKYDASVAKVAMLKKNTSITAPFSGVITEIMINEGETYAF TPSLSSDLKLESGIIELRQINPLKATIEVNEKDLSYIAKGQQALITFDAYPDEPATGKVS YISAVLSPTTRTASVEVNIPNSNNRLKPGMYCNVSIALPEREGLFVPLNAIYRLAGTAEE FVFKLNEDGETVSRIAVKRGEINDGWVYVESNELKSGDTIIIDGKNKLSDGSKVNVVKK >gi|228307988|gb|ACLR01000123.1| GENE 110 129717 - 131126 1508 469 aa, chain - ## HITS:1 COG:aq_699 KEGG:ns NR:ns ## COG: aq_699 COG1538 # Protein_GI_number: 15606101 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Aquifex aeolicus # 44 457 27 433 437 87 23.0 5e-17 MRYRFNGRSFLLLGTALVLTLGGSAEAQTQEQVPMSLEQCRDLALEHNKQIQMAQADAVA SDYLVQSAKTKYLPRVDFAGAWINPGDRPIRPFAIDFNIPGVTPPGLSIPLDFISVAPRE IYTGGFTLRQPIFMGGKIVEANKMARYTSDLAHEKVKMKEADVLATVDEAYWRVISVQEK VRLAQTYKSLLDHLVRDLENVYAEGMTTRNEVLKVQVKQNEAELTLVKAQNGLQLSKMLL GQIIGLEAEQIELDSAIISEEQLSSRLLALESSNAERAEIVMLRSKLALTESARKMVKSQ FLPNVFLTAGYNWVEPNIYKGSQSNLGGDWMVGIGVQIPLLTWGDRIHQVHIADQEVAKA ELELQDAQEMIALQVQQNRFKHAEALKKMELTKLSKEQAEESLRITKNNLLEGMNSVRDI LEAQTMWEKAASEDIDARVEAAVTLSQLEKTTGALYQYATEHTQTRQEE >gi|228307988|gb|ACLR01000123.1| GENE 111 131155 - 131943 816 262 aa, chain - ## HITS:1 COG:CAC1670 KEGG:ns NR:ns ## COG: CAC1670 COG3279 # Protein_GI_number: 15894947 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Clostridium acetobutylicum # 1 251 3 249 253 86 25.0 4e-17 MRVIIVEDEYFTATGLQSLLTEMDPDIEVLTILQSVSECVEWFGSHPEPDLAFMDIHLAD GPVFSLFERVEVTCPIIFTTAYEEYALKAFEVNSIDYLLKPIKETDLQRALEKVKRFSHT EQRVDNQALMAKMMQVLNESQMSYKSHFLIPWRDKLIPISVDKIAYIRADSKASVVVTTD RKEHFVDLSLEKMAQELNPRLFFRANRQYIVAHSAIQSMSVWFGGKLTVTLDIETPEKIV VSKAKNKEFKEWYQGAYDPDTK >gi|228307988|gb|ACLR01000123.1| GENE 112 131940 - 133067 1067 375 aa, chain - ## HITS:1 COG:YPO3943 KEGG:ns NR:ns ## COG: YPO3943 COG3275 # Protein_GI_number: 16124071 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Yersinia pestis # 181 366 371 565 565 87 34.0 5e-17 MTRRIIMGRLRRRQGKGFILLSNERKSVLLATLIISFLLAFVMLSSSIYYYSLLDTDRKI DLGAILSVNSFASLLVNMVFFYLLLSIQSWAINRYEIRQYQLWLILLGLLVGVILISPYL SRLQRWWFRDLFSYHAYAAMQYVKDLVILVVTFLFTMTIYLMKQNHLAVVGMQELDFENL QNRYTALKNQTDPHFLFNSLNTLNGLIGRDDERARAYVQELATVFRHTMRDKVVVRLSEE LEFVHSYLYLMCIRYFDGLRVEWDVDKKYLDYYVIPSGLQILVENAIKHNIASAKVPLTI YIRTVDNQIVVDNKIQLREDSQSGSTGVGLDNLMEQYRLLFGKDIDIVSNDGHFTVSLPL IQSLEEVEPKAKSLI >gi|228307988|gb|ACLR01000123.1| GENE 113 133204 - 133908 797 234 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470254|ref|ZP_04055158.1| ## NR: gi|228470254|ref|ZP_04055158.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 234 1 234 234 434 100.0 1e-120 MKRNIIAIVATALMGMTAVSAVAQTTSLNYGVKAGVNCSSMILSDDFNILKTEMKPGADF GGFMRINLHQNFAIQPELEFYYRGMGIKAEVAGLSVENKINQWGMQIPVYALGKVELGKG QLYGGVGPYVGVGFSAKTDEIKFAVFKKDPIDLYEQHNDKSALQRWDVGVACQLGYEFAN GIQINAGYKYGFINQVDDLKSTVNDVASRFGTSLQDNAYKANASVLTVGLGYRF >gi|228307988|gb|ACLR01000123.1| GENE 114 134092 - 136680 2403 862 aa, chain - ## HITS:1 COG:PH0863 KEGG:ns NR:ns ## COG: PH0863 COG1506 # Protein_GI_number: 14590723 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Pyrococcus horikoshii # 378 847 163 641 642 169 26.0 2e-41 MKRNVLRLLTMLPLLVLATFYTKAEQLRAINPSATVQQPYTVGASATEHQPDTLTVVPMQ VQQYRVMKPFISDSLDVQGKAYDATDLLKPVNHIKLSHAHGTLPTAQEGIVTLRTTEDAI TTYAVRLRTPSYEQATLQIETTVPFVLALDGDKLSSATQYQSELKVASPASLTLTPGRSH LVTLQLLTKGGESAQYRLKLIPAKADSQIEVRHDDKEYLSLEYMMTGRNLYSVSVSPTGR YTLLTERETTALKSSYRTYIYQGNKLLSTLSEQYRFASWMPKEDKLYRTSTTDDGRQLIS YDPKTQEERVVAEQIPAGSFFMMPDGKQLLYTIEEEGPARGKITEQVLGRYDRMADFRKR TFLALYDLESGRYQPLTFGHRSTYLQDVSPDSREIILSTSEDITEIPFSQSNFYTMRLET LEVKPLFTKERSISSVSYTALPHTLLVEGDANAFGGIGRNLPEGMITNTYDGQLFLYDRQ SQRATPLTKDFDPAIKRVKVSTVQPVAYFTAENKDRISLYRLDLRRKQIEQVATTEDLVR SFDISDDASQLAYYGQSAMNADRFYSLRGKRETLLYDLAKSKMQDLELGSVSDWVHTMPN GDKVEGRYYLPPHFDATKQYPMIVYYYGGTSPTTRFFEGSYSLPMYAAQGYVVLTLNPSG TTGFGQEYAARHVNAWGKVTADEIVSATKQFCQEHPYVNAKKIGCMGASYGGFMTQYLQT ITDIFAAAISHAGISALSSYWGEGTWGIGYSTVASYNSYPWNNPQLYTEQSPLFHADKIH TPLLLIHGTDDTNVPIGESIQMYNALKILGREVAFVKVHGEDHIITAPEKKIEWTNTLFA WFQKWLKDDSTWWDARYPEAHL Prediction of potential genes in microbial genomes Time: Fri May 27 09:35:38 2011 Seq name: gi|228307942|gb|ACLR01000124.1| Porphyromonas uenonis 60-3 ctg1118640599622, whole genome shotgun sequence Length of sequence - 58216 bp Number of predicted genes - 43, with homology - 39 Number of transcription units - 20, operones - 12 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 1543 - 1591 8.0 2 2 Op 1 . - CDS 1613 - 1864 136 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 3 2 Op 2 . - CDS 1930 - 3618 2589 ## PGN_1323 TPR domain protein 4 2 Op 3 . - CDS 3643 - 6135 2602 ## PGN_1968 hypothetical protein 5 2 Op 4 . - CDS 6164 - 7129 761 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 6 2 Op 5 . - CDS 7156 - 8634 1652 ## COG0215 Cysteinyl-tRNA synthetase 7 2 Op 6 . - CDS 8657 - 9382 137 ## PGN_0371 hypothetical protein 8 2 Op 7 . - CDS 9379 - 10737 1799 ## COG1253 Hemolysins and related proteins containing CBS domains 9 2 Op 8 . - CDS 10730 - 11194 461 ## COG0629 Single-stranded DNA-binding protein - Term 11229 - 11274 4.1 10 3 Tu 1 . - CDS 11341 - 11520 292 ## gi|228470381|ref|ZP_04055284.1| hypothetical protein PORUE0001_0467 - Prom 11730 - 11789 3.1 + Prom 11485 - 11544 3.6 11 4 Tu 1 . + CDS 11767 - 11991 76 ## + Term 12104 - 12138 1.9 12 5 Op 1 . - CDS 11899 - 14238 3095 ## PG2095 putative lipoprotein 13 5 Op 2 . - CDS 14235 - 19100 4598 ## PG2096 hypothetical protein 14 6 Tu 1 . - CDS 19241 - 20767 1087 ## PG0236 hypothetical protein - Prom 20853 - 20912 2.0 - TRNA 20972 - 21048 91.5 # Met CAT 0 0 + Prom 21112 - 21171 4.9 15 7 Tu 1 . + CDS 21277 - 22719 1653 ## COG4690 Dipeptidase + Term 22743 - 22799 17.1 - Term 22956 - 22999 13.3 16 8 Op 1 . - CDS 23062 - 24117 1294 ## COG2855 Predicted membrane protein 17 8 Op 2 . - CDS 24151 - 24804 741 ## PG1383 amino acid exporter, putative - Prom 25054 - 25113 4.9 18 9 Op 1 . + CDS 25081 - 28353 3583 ## PGN_0192 hypothetical protein 19 9 Op 2 . + CDS 28383 - 29129 1005 ## COG0588 Phosphoglycerate mutase 1 20 9 Op 3 . + CDS 29169 - 30539 621 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 21 9 Op 4 . + CDS 30546 - 31508 964 ## COG1893 Ketopantoate reductase + Term 31520 - 31574 9.1 22 10 Op 1 . + CDS 31606 - 32943 1021 ## PGN_1159 hypothetical protein 23 10 Op 2 . + CDS 33010 - 33450 541 ## gi|228470385|ref|ZP_04055288.1| hypothetical protein PORUE0001_0480 + Term 33501 - 33548 9.1 - Term 33779 - 33819 -0.7 24 11 Tu 1 . - CDS 33821 - 34003 214 ## - Prom 34240 - 34299 2.5 + Prom 33873 - 33932 5.4 25 12 Op 1 . + CDS 34106 - 35017 756 ## gi|228470370|ref|ZP_04055273.1| hypothetical protein PORUE0001_0481 26 12 Op 2 . + CDS 35031 - 35936 733 ## gi|228470364|ref|ZP_04055267.1| hypothetical protein PORUE0001_0482 + Term 35984 - 36025 8.6 27 13 Op 1 . + CDS 36059 - 37057 634 ## Cpin_2931 GSCFA domain protein 28 13 Op 2 . + CDS 37081 - 39588 2527 ## COG0787 Alanine racemase + Prom 39590 - 39649 2.7 29 14 Op 1 1/0.000 + CDS 39717 - 40622 1341 ## COG3643 Glutamate formiminotransferase 30 14 Op 2 1/0.000 + CDS 40737 - 42011 1484 ## COG1228 Imidazolonepropionase and related amidohydrolases 31 14 Op 3 1/0.000 + CDS 42064 - 42699 816 ## COG3404 Methenyl tetrahydrofolate cyclohydrolase 32 14 Op 4 . + CDS 42706 - 44205 1928 ## COG2986 Histidine ammonia-lyase + Term 44254 - 44310 13.9 33 15 Op 1 . - CDS 44673 - 47519 3095 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 34 15 Op 2 . - CDS 47546 - 48151 518 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 48277 - 48336 1.9 - Term 48352 - 48404 16.3 35 16 Op 1 20/0.000 - CDS 48428 - 51607 3627 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) - Term 51658 - 51702 2.3 36 16 Op 2 . - CDS 51721 - 53100 1641 ## COG0195 Transcription elongation factor 37 16 Op 3 . - CDS 53164 - 53661 564 ## BVU_1353 hypothetical protein - Prom 53841 - 53900 6.1 38 17 Op 1 32/0.000 - CDS 53977 - 54234 444 ## PROTEIN SUPPORTED gi|228470375|ref|ZP_04055278.1| ribosomal protein L27 39 17 Op 2 . - CDS 54254 - 54571 529 ## PROTEIN SUPPORTED gi|228470391|ref|ZP_04055294.1| ribosomal protein L21 - Prom 54741 - 54800 4.2 - TRNA 54701 - 54772 51.9 # Arg CCT 0 0 + Prom 54901 - 54960 2.0 40 18 Tu 1 . + CDS 55049 - 55816 564 ## COG1397 ADP-ribosylglycohydrolase + Term 56054 - 56097 2.9 41 19 Tu 1 . + CDS 56250 - 56474 88 ## + Term 56572 - 56610 1.2 42 20 Op 1 . + CDS 56637 - 56888 166 ## gi|228470365|ref|ZP_04055268.1| hypothetical protein PORUE0001_0498 + Prom 56905 - 56964 2.2 43 20 Op 2 . + CDS 56984 - 57220 168 ## + Term 57223 - 57260 -0.2 Predicted protein(s) >gi|228307942|gb|ACLR01000124.1| GENE 1 1 - 1153 1368 384 aa, chain - ## HITS:1 COG:FN1787 KEGG:ns NR:ns ## COG: FN1787 COG0457 # Protein_GI_number: 19705092 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Fusobacterium nucleatum # 66 371 47 351 628 91 25.0 3e-18 MMKRIMALLLSLLCLATTLSAQVQDTTDLSAQDLPTLERTFDTFSPDLQDALETIMPNPE NQTAFLENVQKALQSEPNNGVAWAYVATIYRMQGKSEQALEAATKAITLLQAKPARRAMV YSLRSDIYTDLEDGVKALMDLHSAIKDAPDTSALYLKRGGLYMNMEQYELAEVDLRKFIS LAPKDATGYTGLATLAILQEKYEDAIQNLNDAIKLEPNEGFLYYLRAGSNVKLEHYDEAM DDIIYTIANSLADEDTYSLLNVIAAQAMPTLESKLKALESVSKTGEYLFLIGLAHQNIGD NKGALEYYQQVTERQELDDVVASHIATAYQGIGDYSSALKYIDEAISLDPTDYTYIYTKA QMLSEDGNLRRALAESNKYVSLVP >gi|228307942|gb|ACLR01000124.1| GENE 2 1613 - 1864 136 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 29 64 1 36 58 64 94.0 2e-09 MAPLSLILLHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSGQSCLQDCETVDC CNSLSLSATTSMPSGEIGIIAVR >gi|228307942|gb|ACLR01000124.1| GENE 3 1930 - 3618 2589 562 aa, chain - ## HITS:1 COG:no KEGG:PGN_1323 NR:ns ## KEGG: PGN_1323 # Name: not_defined # Def: TPR domain protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 6 562 2 564 565 543 50.0 1e-153 MTYRNLLKITTALLLAVLVSSCACRLKPLDGSAAQVDPTPLTLVGTQIPGQVRLTIPAKW CHKRAIVNVTPELRYNGTSVTGQTVTIQGENVRDNYQTISYERGGSVIIPFTFDYKPGME QSDLYLTFAATIKGKKVNLPAVKVARGTIMTADLASISDITPALARDAFQRVIKEQYTAD LKFLINRAEVRAAELNKREVKDWQDVVDNAYQVPNQEVDIEIQAYASPDGAQDFNERLSA QRERNTSRVVARQLGKKKIEVNAHYTAEDWDGFQKLLEASKIQDKELVLRVLSMYPDPED REREIRNLSHVFTQLADEILPELRRSRLNANVRIIGKSDDELKMFMAQRPGRLTIEEILY TATLYDNAKDQMNAYQQAVQLYPKDYRAYNNIGTLYLAQGNYEQAASYFAKAQKIQPNAA SNMNEALLALDRGNLAEAQRLMGSAVEVPEAGQGIGLLQMHEGKYADAIRSFGNTPSNTL AIAQIMQGQYADATRTLAAIAQPNGETAYLKAVVAARTNDLQALVSNLRAAIALDRSYAQ RAQRDLEFAAFSQTPEFVALVK >gi|228307942|gb|ACLR01000124.1| GENE 4 3643 - 6135 2602 830 aa, chain - ## HITS:1 COG:no KEGG:PGN_1968 NR:ns ## KEGG: PGN_1968 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 810 26 834 847 888 55.0 0 MKQIPWQRILLIFGFFLIVALGYFAPAHFEGRTLFQADVAGVSGNGSDVQASDETSYWTN SLFGGMPMYQISPSYPSTKPLQYLQDVLTLRKPLSILGTYPWLIFALLVGFYIFMRSLKV DPLPSVLGAVMWALSSYFIILIHAGHIWKLTALCFVPPTIAGLVWCYRGERLWGGALFAF FMALQLLANHVQMTYYFALLMGILVIAFLVQAIRERQVVGFLKSTGVLILAGLLAIAVNG TNLYHTYQYAQETMRGGSELTIAPPHAPEQAEAEVNSKGLSKEYITQWSYGIGETWTLLV PNTKGGATEPIAKGHAKQLAKAPYEYQQMLGQMNAYWGDQPFTSGPVYVGAFVCILFIIG CVVVKGPIKWGLLIATILSILLAWGKNFMPLTNLFIDWMPMYDKFRAVSSILVIAELTIP TLAVLALVQLIKEPQLLRSKSVWIAGGVPVLLLLLFALLPDLFFGFLSQQEKSMFAELAT QDPRYLTLQDQLKTIRMDIFRADIWRSLLFIVLSAVPLWLFAKGYLKTQWLCCILVGLTL IDLWQVDKRYLADDDFIAPQLVQQQAAPMTEADRAILQDKSLGYRVFNRTVNSFNDATTS RWHHSVGGYHAAKLQRYQDLITYQLSTGNKQVYDMLNTKYFIVPNPETKAPMAMTNPDAF GAAWFVDSLRWVANANEEMEALTTADLRHVGVVDLRFGEELPQPLMLPNSTAQRSITVTK YTPRQVVYNVSAEAPGIAILSDIYYPHGWHATIDGKEIPIARANYVLRAVSLPAGKYQLT LTFAPRSITVTESIAFTALALILLALIGSIVWRIRSLGKGKKAPTDSQTK >gi|228307942|gb|ACLR01000124.1| GENE 5 6164 - 7129 761 321 aa, chain - ## HITS:1 COG:Ta1048 KEGG:ns NR:ns ## COG: Ta1048 COG0463 # Protein_GI_number: 16082079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Thermoplasma acidophilum # 3 244 7 223 256 84 28.0 3e-16 MLSLIIPVYNRPDEIEELLHSLAQQQTPPSYEVVIVEDGSSVPCATVVDRYRDQMSIHYE VVPNGGPSKARNIGVRHATGDWVIILDSDVVLPPDYLYNVSQAIVADECDAWGGPDAAPS LQDGSFGMWQRAINYAMTSPLTTGGIRGGSKRLTKRFYPRTFNLGCRKDLFESLGGFDET MRYGEDIDFSMRLYEANSRVALLPEAVLYHKRRVDLRKFYRQVWHSGTARVELSRRHPGS MRLTYLLPTLFVVTTLLFTLLAVWCPWFWLYHVLFIVTIFADASCRTHSVAVAWRAVVAS FVQLSGYGIGYLSQRFKRCKA >gi|228307942|gb|ACLR01000124.1| GENE 6 7156 - 8634 1652 492 aa, chain - ## HITS:1 COG:DR1670 KEGG:ns NR:ns ## COG: DR1670 COG0215 # Protein_GI_number: 15806673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Deinococcus radiodurans # 6 490 54 531 532 432 45.0 1e-121 MSQLYIYNTLERAKVPFEPIAPPHVGLYVCGPTVYGDPHLGHARSAITFDILFRYLKHLG YKVRYVRNVTDVGHLEHDADDGEDKIAKKAKLEQLEPMEVAYYYLNRYHDSLRLLNVLPP SIEPLASGHIIEQIQLVQQILDAGYAYVSEGSVYFDVLKYHADHPYGILSGRNVEDMISN TRELDGQDEKHNPLDFALWKKAQPSHIMRWPSPWSEGFPGWHCECTAMGRKYLGAHFDIH GGGLDLTFPHHECEIAQAVASQGEPMVKYWMHNNMITVDGKKMAKSAGNFITLEEFFTGN HPALEQAYAPMTIRFFVLSAHYRGTVDFSNSALQAAEKGYQRLMDADAKLQSLKPSATST IEKIDLAERCKEAMDDDINTPMVIAALFDAARLINSIHDGHEQITSEQLEELRKTYDLYL HDILGMQSATEASDLSGSQQEAFAGAVDLLLDIRSKAKASKDWETSDLIRDKLTALGFEI QDTKSGAEWKVL >gi|228307942|gb|ACLR01000124.1| GENE 7 8657 - 9382 137 241 aa, chain - ## HITS:1 COG:no KEGG:PGN_0371 NR:ns ## KEGG: PGN_0371 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 31 142 28 135 198 66 38.0 8e-10 MNYSQLPLPLGDILYIAELPASIAPSLPTYRSLTQQLLDEIAPRESVWQLTHLPSGAPRL VSPDHDYHISISHSGSYVALVLSEGAHGVGIDIQVASDKLPQVAPRFMSPTELAYYRDLT TSEANEWLYTVWCLKEAAYKAYPLQVKRHLATNYTVSPPEASLSCDVESNSFARYTVYAD RGTTTLPFSRATSFVASRLRPTTSPTFKLWRELLKVKPHTRDTVSLKSLSLRKHWCICTV L >gi|228307942|gb|ACLR01000124.1| GENE 8 9379 - 10737 1799 452 aa, chain - ## HITS:1 COG:FN1486 KEGG:ns NR:ns ## COG: FN1486 COG1253 # Protein_GI_number: 19704818 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Fusobacterium nucleatum # 37 441 17 425 426 199 30.0 9e-51 MGDAFLLSLFGGIVYSNPIVWMDAIPLLIILFLLLCSAFMSSNEVAFFSLTPKEVQQIKD QEHPNDTRLLQLLSHSEQLLATILIGNNAVNVGITILCAWFVGEHWDFSANLVAGFIIQT VLITFLLLLFGEIIPKIYAQRHPLSFIRLTAPAVSGLYKGIAWCSKGLIKTSKLLGSKAR RGPELSVDDLSEAVALTTNGDNKETEMIHEIVKFYHKTADEIMVPRVDMIGVNYHWAYHQ TLSFAVDTGYSRLPVYDGSQDSIRGVLYVKDLLPHMHEEDTFPWQKIIRQAYFVPENKKI DTLLEELQQERIHMAIVIDEFGGTSGLITLEDILEEIVGEIVDEYDDEDPPYVRLAEGVY LIDGGMSLIDLCKLLDVEPEYFAPHYEEVDTVGGLFLEVLQEIPQVGQQITISDIDFIVT RMERHRIMQLKMRLHPKEQTDTQTDSQTESQA >gi|228307942|gb|ACLR01000124.1| GENE 9 10730 - 11194 461 154 aa, chain - ## HITS:1 COG:PSLT066 KEGG:ns NR:ns ## COG: PSLT066 COG0629 # Protein_GI_number: 17233435 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Salmonella typhimurium LT2 # 4 100 7 102 172 82 42.0 3e-16 MYYNKAILIGFVGADPSVHYSRRGTCQASLRLATSVPGYTKRDGTQIPDRTEWHTVVIFG TLAQFVERWVRKGSHLLVEGEIRYNSYTDRQGQVHARTEIWADKVTFVDRPKQSSGQESA SPRPAAEQSVSPSDPSDATSVGDNGISYKSRSNG >gi|228307942|gb|ACLR01000124.1| GENE 10 11341 - 11520 292 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470381|ref|ZP_04055284.1| ## NR: gi|228470381|ref|ZP_04055284.1| hypothetical protein PORUE0001_0467 [Porphyromonas uenonis 60-3] # 1 59 1 59 59 87 100.0 3e-16 MKGFNPIGSLVVLVGALILIVPALMDKGGNMFNLIGCIVMIAGFLLHIFLNKRITTIKE >gi|228307942|gb|ACLR01000124.1| GENE 11 11767 - 11991 76 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVRKKNFEVRKNLAFPPWRIRIPSVESRIKGDLAHKCIRTKKNLEGIAYGKVVSERIGK PGQVVVATPCRLKG >gi|228307942|gb|ACLR01000124.1| GENE 12 11899 - 14238 3095 779 aa, chain - ## HITS:1 COG:no KEGG:PG2095 NR:ns ## KEGG: PG2095 # Name: not_defined # Def: putative lipoprotein # Organism: P.gingivalis # Pathway: not_defined # 21 779 14 775 775 741 49.0 0 MTRYRYRPTIAHALLLLLSTLLALSSCSVTRHIPEGELLYIGIGKTRIQGDDGSDAADRA ISHMEKVLNVPPNNAFFGSARSRFRIPIGLWFYNGFVNDSTWVGKRLYKLFAEEPKLISD VRPDVRAKQSKLILHEHGYFKAVVTDSIARSTSDSLQARVYYKADLGAPYLYDSISYMEP WLLGSGEILNHAELSKIHKGDQFNFSQILQDRDMLVTNLRDRGYYFYAPDLLVYQVDTLL TPGKVYMQVREQSGYPSYTFEPWRIGSVHVLLTEDDRLSLTDSMQFKGITLHYREHPRVR PAVFANRIQLRTGELYSQSREQATRQALLGLGAFSYVDMQFVASDTLHNLLDLYITAELD KPWDSSLSAVFTTKSNNFIGPGLTLSLGRRNVFGGGERLSLDLYGSYEWQTNRTRSNQNV SISDINSYEVGSNLNLQAPRILLPWLYDLRLTHDVQTTYTLSASMLNRARYFQITSLGLT ASYSVRNTQHQHMITPLRIHYNRLSRQSEIFQKVIADNPILGLSLRSQLIPQMSYQYTFD NIFTGLGSHHLHIDLGISQAGNILNGIYSLAGCNYHETKKLLGVPFAQFVKGTAELRYTY GIDRNQSLALRAGVGAIYSYGNMTVAPYSEQFYVGGANSIRAFTVRSIGPGRFVPRNSRY AFMDQTGEFKLEMNAEYRFRLAGDLHGALFLDSGNIWLLRPDENRPGASLQEITGAKDFF QQLALGSGVGLRYDLNFLVIRFDVGVGLHLPFETTRRGYYNLPRFANSLGYHFAVGYPF >gi|228307942|gb|ACLR01000124.1| GENE 13 14235 - 19100 4598 1621 aa, chain - ## HITS:1 COG:no KEGG:PG2096 NR:ns ## KEGG: PG2096 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 32 1575 33 1560 1596 783 31.0 0 MNPVRRRRKLFWILLLTPLTVLLLLIGSIYLPSVQRWAVGRLISTLEEQTGWKITVEEMR ISFPLRVRVDKLLATEQGDTVIWVNELRTSLPLMPLFNKRIEAPRLNLQDAVVAMPLDSL NRSRIDARLGNMEAGHVQVDLSSMDIDIAAVSLADGFFAYTQTDTTETSEPGPAMSININ RVDLTRFASYIHLYPSGVHTDAVIDRGAVDKVMVEIPDFNLLVEHINVDLTRASYATDTA KVQLPYVDYSHMSYHDAHADIDGLSINSKGLVQMDINQLSLREQCGAQLEHFQGYFKLED KVVNMRNFMLTTPKSQLTGDLILPLSLFSDDEEAVVTAELKGTLAPQDLYYYTRISLDSM LYSPGGHKQLADVPLSVDLRSRGSLSALEIYNLELRQEGFIALTASGTATHILDEHRRTA SLRSSIQTGPAAKLLLALAGIDKASGSVTLPAKMDLDLDGTLHGDQITADLHLGTPRGSL SLNGTYALRQQRYKIDGHLDRFDVAQFMPRDSIGVISGSIKADGAGFSLKSRNKNGLVAV ALDEVNYKHHRLRNLSLDGFLRGDSVSVSLQSYDPSAQLSGDIAGTLITAGKRPSFGGKI DLDVSHLDLQALGLSDSIMEGSLRLTADLYSDFAETHMVDGQLSGLHLAVGSQRIDNEQI DLRLASDTSQVIAQLGANDIDLSVTTQEGLNHLLTSISGVSKWAGEYQFDKPRLTAYSDL ISVLPNAHIALHMGSHHPLHSLLEKYNVSVESLDADLLTSPNLGINGRIELHQLQYDTIQ CDNALLQLTTLTPSRPILLDHLTHVSQQLPSEAMRPLLLSDLSDQFNSDNLAQRYVHPLL QIDLSLEGERQDKRPPYKIIGSAQTDLVAMSLDFDWLRDHELYYSLGASGYYNAQGFGVS LSDKDIYLAGERLRANEDNALFYFHKDNQIFANLELTNPHGAKLSIHSDLDEPSNVQSLL CNVQRLELSDLARILRLPDMSGRTFMDLRIERVDNVYRATGDLSVNDMTYMDGDLGNVSV AFFYEPRDNASQYVTAQVSSNGNLALTVDGIYHSRKGEEALDMKASFESLPLRLANPFLG GNLLSLEGALNGSIAVTGTPKSPILNGAPHITDGLVALSLTGNKYTLDSRPLTIEQSRLT LQDYKLTLQGKETSLYLDGWLKLFGPEALKSNLRLYADHAQVIDSKYHNKQSIYGRAILS ADLRLQGYLTAPQLLGSVTLHGGTNATYVMSQAAIKAQDNMSGVVEFVNLSDTTIVEEPQ KERSQSLGRMDLAVALHIEPAVQIGIDLSSRGQDYVRIQGGGDLRLKYPPLGTMSLVGRY DFSGGEVQYEFPVVGRRHFDIEPESYLVWSGDPLDPYLHFIASQKLRADVTRGETTNKVD FKVSIKADENLKDMALAFDLAAPEDLETQTQLSAMSEEERGKQAVAMLVSGTYLASDMGQ MSMEKVLSNVAMSELNNLTGKLLQGTNLSLGMELGGYNQSQLQQTNYTYSFSRRFLNDRI RFVIGGRVASGNLPTNYEQTFIDNVTFEYRLDEAGQQYVTLFHRRNNDNMLEGVVTETGI GYLVKLKARHFVDLFDPRNYMWWQKKKSEKPADTKKPLDSLSHTTPISPDTVTSISQTPQ L >gi|228307942|gb|ACLR01000124.1| GENE 14 19241 - 20767 1087 508 aa, chain - ## HITS:1 COG:no KEGG:PG0236 NR:ns ## KEGG: PG0236 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 8 503 1 506 506 291 36.0 4e-77 MNEIKRSIRALARLTSIALCAALLLVACVRSPWQYDRSEGSQPHLSVDTIRLDTLYSALS SATHVAMIYNPHDHPLLLDEVSLLSGGNKGYRINVDGRSGSEIRDVTLPPRDSIFVFVEA TFTAGDSDLPTLVTDSLLWRCNGVTHYTRIEGYRQNVSTLPANWHIAKDTLWRSERPYLI TDSITIEPGARLTIAEGGHLLLPQGGRIIVRGALTLAGSAASPILIEGVRRDNLTTDVSY RLLPNQWDYIQFTAESQGNEIRYTTIRNGREGVTFALGNDPLAKRLLLESSTITNMGGDG LTLAGGSYTLRNSELSNVGGSCLSMRKATVQAEQMTVVCDYLFDHRRSPVLYVGKEGKLQ MINSIVDGRQTIALQSDTLRRSGELAWHPSAQAQLDLQHCYLRLGQDSIAAKRLVEELFP TCHRATVPFVDSYWMLGKDYKDRNNRQAKYHFHFDFHPVETAGLQELSPLAPTACALDRT GLPRRKNKLGGYTIGAYEAVAPPKEKKP >gi|228307942|gb|ACLR01000124.1| GENE 15 21277 - 22719 1653 480 aa, chain + ## HITS:1 COG:STM1094 KEGG:ns NR:ns ## COG: STM1094 COG4690 # Protein_GI_number: 16764452 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Salmonella typhimurium LT2 # 12 477 20 484 489 399 43.0 1e-111 MNKKKSNLPSECTTIIVGSQMSADGSRIVARSEDWDAMFAKNLTIHRPGEPGSVDPMRFD AFDSPFACDLPGNAQSYSALPPYHLPGHWGSAGFNESGVGMSATESIFSSDAALAVDPLV ENGVAENSVFNIVLPYIHTAREGVERLGKLIEEYGVSEGFGIGFVDSDEIWYLETASGHR WLACRIPEEQYFVTGNQSRFRQYDPKDKEHFMASSDLIEFAQEHGLYDPKEGAFDFHKAY IRDVELDTTYNYPRVWGLQQMFTPAMKQDVAVNNFPVYAKAEKPITMEAMRHAFRFHYDG TEHDPYLHSNPHEVYRPVSIFRTTQTHILQVQPKLPVAVGRINHVCLGMADLGLFVPLFQ GVTSYPEPYTKGGGESSQESAYWTFRKVQVLGMTNYNKYAPLIKARYHAFELECDERIEE IQRRYCHKLDKGMPHAAQDMLQEASDAILWRALEVADALIEELFTQMTRDIQAEYLFHGA >gi|228307942|gb|ACLR01000124.1| GENE 16 23062 - 24117 1294 351 aa, chain - ## HITS:1 COG:PM1461 KEGG:ns NR:ns ## COG: PM1461 COG2855 # Protein_GI_number: 15603326 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pasteurella multocida # 12 344 6 326 336 200 39.0 4e-51 MTKAISRPSGGFWCGLILMAAFAGVAVALAQLPLFKETLRISPLIISVLIGMIYANTLRH KLNPTWVPGLAFSSKRILRLAIVFYAFRLTLADIYEAGATAFIYDLIIVSSVILLGVLIG RWLKMDRDTAILTASGSAICGAAAVLGTEPVLGASSEKTVIAVATVVLFGTLSMFLYPLV HATGWLGLTDHQMAIYTGGTLHEVAHVAGAGGAMGEAIASTATITKMIRVILLAPFLLIL TSVLHRGGRGGATAQRKVSIPWFAIWFLIMICVNTLIAYLAEQQGINDLYNQVCGGIRWA DDFGLCMAMAALGSDASFARFKRAGGKPFLLAGALYLWLTIGGYCLIRLIG >gi|228307942|gb|ACLR01000124.1| GENE 17 24151 - 24804 741 217 aa, chain - ## HITS:1 COG:no KEGG:PG1383 NR:ns ## KEGG: PG1383 # Name: not_defined # Def: amino acid exporter, putative # Organism: P.gingivalis # Pathway: not_defined # 13 211 9 204 212 142 44.0 1e-32 MFITEYILQLFGGIIIGICISAPMGPAGILCLRRALEQGRRAGVVTGIGATLGDLFYAIV TYLFTGIMLDYIDHNKIVLRIVASMLFLAFACYLYFSTPRLGVSQRVVGQINQRNLSHLG SGFLLTIPNLFIVPVYVVLFSQFNFVYPLGAPPYGMFALGLISIALGALGWWLFITYVAT RLRDLVSLRNLRIFNRIFALIFAMIAIISLFYTFVAL >gi|228307942|gb|ACLR01000124.1| GENE 18 25081 - 28353 3583 1090 aa, chain + ## HITS:1 COG:no KEGG:PGN_0192 NR:ns ## KEGG: PGN_0192 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 5 1065 3 1081 1099 1041 48.0 0 MQQNWRLYNLLNNVVGWVTFVIAAVVYLMTIGPSASLWDCPEFILSAFKLEVGHPPGAPI YMLVYNVAAHLAPTPALAGLYTNALSGLLSAGTILLLFWSITHLVRRVVLPGASPCAKQL IPEGVTPVPTLAQTILIMGSGLVGALLYTFTDTFWYSAVESEVYAFSSFLTALVFWLMLK WSDRADNARSDRWIVLIAYVMGLSIGVHLLNLLCIPAMALIYYFRKHDTLSFKGIATTLI VSFVLIAVIMFGIMQGVVAFGGTIDRWVVNGLQMPYNSGFYSYLVILMVVLVGSLTLYQR GERGRNLIISSFILSWCLIGIPYFGGAVWLGVIVTIVLAIYLFQNRKVSLQLLHTAQMCM LVIMIGFSSYGVILVRSLAGTPMNQNEPNTALAIKSYINREQYGAIPHLYSATYVARPIA MEEGSPVYAPKVKSNPKEPDEYVKIYSQPEVKYAEGSKMLFPRMFSPQPEHIRAYNSWID RNPDDMSKPSMADNLKYLLRYQINYMYWRYFGWNFIGRQNDLQGDGGMLKGGVLTGYSFI DQIALGKTKDLPDQFLSNKGRNAYYLLPLLLGFLGIAYQVMRRKKGMQAFWITLALFFMT GLAIILYINQTPGQPRERDYAYAGSFYAFAIWIGFGVAGLYELLSRAKLKPVLNASIVSV LGLIVPIQMASENWDDHDRSGRVLASDFGYNYLISCDPNAVLLCFGDNDTFPLWYSQEVE GVRTDVKVSNLSYLQSEWYGKHMLRHSYEAQPIPNKYMSPAFFVTNSYALIRPTSAVPMP FDQAMKAATKVVPQGQALMPADKVLVSVDSAVVAKHFPQLQGLPMPESMMLSLEGKSAVT RDQLFVLDMLGAAKWQRPIMWVSSAPQNVFANQRQYMSQVGMAQRFNPTTVAGTPYEVDV ERMYDLVMNKYRYFNANDPNIYFDENIRRNISYYYRAHIFAALAQALLRQDDTERAKKVL TKCAEVISPKAVPYDMTDISLADAYYRADMKKQGDEIVRALYRDTAQLLYWVSQQSPRHQ MALINDATVRYSLTALIELIRIDMLWGRNLSAEYETMLQQALPIFGGSLEAVKEMTAQQL AQRLPDPTNQ >gi|228307942|gb|ACLR01000124.1| GENE 19 28383 - 29129 1005 248 aa, chain + ## HITS:1 COG:STM0772 KEGG:ns NR:ns ## COG: STM0772 COG0588 # Protein_GI_number: 16764136 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Salmonella typhimurium LT2 # 1 248 3 250 250 282 57.0 4e-76 MKRLVLVRHGQSAWNKSNQFTGWTDVDLTEQGVEEAHEAGRQLRKAGFRFGKAYTSYLKR AIKTLNIILDEMDLDWIPVEKSWRLNEKHYGMLQGLDKSETAAKYGEEQVHIWRRSYDVP PAPLDPTDERAPQHDPRYASVNPDELPLTESLKETVQRILPYWESNIRPDLEKYGEIIVT AHGNSLRGIVKHLKGISDEEIPSLNLPTGIPYVFEFDDKMQLQHDYFLGDPEQIAKLQAA VANQGKSK >gi|228307942|gb|ACLR01000124.1| GENE 20 29169 - 30539 621 456 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 3 449 4 448 458 243 33 1e-63 MTYDLIIIGGGPAGYTAAERAARGGLDTLLIEERALGGVCLNEGCIPTKTLLYSAKVWQT VQSAAKYGVTCTPEQIDPAKVISRKNKVVRKLVAGIRARMKEAGVTVLTEHATVTAHNSD DTYTVTAAAETYTAKHLLLCTGSETVIPPIPGVEEGHYITHREALDSKELPASIVIIGGG VIGMEFAAYYNEMGVTVSVVEMLPEIINGMDSELAALLREEYAKRGIKFYLQHKVTHLYA DGVEVEYEGKTFKVEGEQVMLSVGRRPVTSSFEALLSQGLELERRGVKTDEYLRTSLPNL YAAGDVNGHSLLAHTAVREAEVAVDHILGRKINPMSYRAIPGVVYTHPEIAGVGFTEDAL RSGDKVYMKLMLPMSYSGRFVAENEMASGFCKVLVNPEGKILGVHMLGNPCSELIVTAVL AIERGMTAHELSEIIFPHPSVAEILKETLETFPRTN >gi|228307942|gb|ACLR01000124.1| GENE 21 30546 - 31508 964 320 aa, chain + ## HITS:1 COG:BS_ykpB KEGG:ns NR:ns ## COG: BS_ykpB COG1893 # Protein_GI_number: 16078508 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Bacillus subtilis # 35 313 26 296 303 80 24.0 5e-15 MRPPHIVILGLGGVGGYFGGLWTRYAMAHPDQLRVSYLMRPGAHYDCVRSEGLRISSPRL AETVVRPSCVTCDPQELEPIDYLVVVTKSYDLADSIRPLQPFLTKESAVLPLLNGLDIHE QLRTMLPAEVERWAGIAYVTARRTEPGVVESHSDNERLYAGSLARPIGSERTASEERLLR ISQVAGIDLVIPDDPMEEVRKKFLMLSNSAAATGYYDCGVEGLLGAHRAFVIGLTEELCQ LYRAKGWGISDADPVASALRRIDRMPPATTTSMNSDLRNHHQSEVESLVGYVVRESQRLG LSAPHYEEAYAGILQRIAQQ >gi|228307942|gb|ACLR01000124.1| GENE 22 31606 - 32943 1021 445 aa, chain + ## HITS:1 COG:no KEGG:PGN_1159 NR:ns ## KEGG: PGN_1159 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 74 441 94 466 473 145 30.0 2e-33 MKRLLVILLCLLTLPVFMAQGQKLDSLTQAFHAKPTVATATQLVERATARGCSDLAVSAY EYLAHQNGKYLPALWECYLRELRLDALSASLEKQSKARKSQYAIDLYAERLYTLRRLMGN VLWLEVADTVTIAREQLASYLNGQGVKVFSCDTLGLGFLTERSDRYIRPLRKRPGAPVRL VYGDLLANQPIPTTLQSDASIITAIPDSLEAPSYPTLAPDGITLYFSAISKQGLGGRDLY MTRQTASGGYLQPVPLGLPYNSSGNDLLLAFNAERHLGYLVSDRYAPRGMVTVYRFVYND GEVTEVPSNDPALLRQYAMLRPYHVTQRSDVDYATLLGKHTSAQPAHSSASQGNFVVAPN VIYTSRDQFHSAEAATLYDQYLSQQKQLTEQEQTLARLRTAYHQHSGSDADLTEMILQLE RELPAARKALRTLAQKIRQLERPHL >gi|228307942|gb|ACLR01000124.1| GENE 23 33010 - 33450 541 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470385|ref|ZP_04055288.1| ## NR: gi|228470385|ref|ZP_04055288.1| hypothetical protein PORUE0001_0480 [Porphyromonas uenonis 60-3] # 1 146 1 146 146 252 100.0 4e-66 MRKEQLICLCLAMLLVSTTLMLSSCKKDPKDKDPKEALVNTRWKMATDLTGLDIDKEIGE VSGGELRFTSQTEGELTAAIKGTKLTLSVTYSYDATQKAYPATVKIGDDINQFILKVNWD TNILIAYELEAGVVIPKPIMFFTLVK >gi|228307942|gb|ACLR01000124.1| GENE 24 33821 - 34003 214 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIQYKSINISMKKIGRRRKSIKSSMEILNYPGRNKKILRNFEIFLPKFHFILPNFYFPVP >gi|228307942|gb|ACLR01000124.1| GENE 25 34106 - 35017 756 303 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470370|ref|ZP_04055273.1| ## NR: gi|228470370|ref|ZP_04055273.1| hypothetical protein PORUE0001_0481 [Porphyromonas uenonis 60-3] # 1 303 1 303 303 561 100.0 1e-158 MQYYLHVSLRGSLLAGLLLLLSTSWLEATPLESLAPDTIIERNDYKLIIEPSKGQTDVIL VDYNERHRVRRMETTAHSIDRELRKALSSVGGVLGIYDDNSFRWGTIRLFPKLYFGSTMM LGDAFAHAATPCFNHYMVAPIGYRYYIKGRYFVGFDFAFEGRTYSLRDGYYFTTNKEFSA LSQSHYDDGMGLRQSKLVTRYISFPITLGMRPMMNSRMRLGVEVIPQIKYKEYVMHKQYG DRHKERTTTEATPPLSMTYGAFIDFRPIGIYVHYTPQPLLLVRDARSKYNNEGLLTAGLS ITF >gi|228307942|gb|ACLR01000124.1| GENE 26 35031 - 35936 733 301 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470364|ref|ZP_04055267.1| ## NR: gi|228470364|ref|ZP_04055267.1| hypothetical protein PORUE0001_0482 [Porphyromonas uenonis 60-3] # 1 301 1 301 301 577 100.0 1e-163 MYSRVYTLPLFALVTLLLTTLSATGQTVTSCDTIQLADRTVYVMRGEKDTQIEVEHRLPK GQKQEVPLYIDRVWTRGGRQTAWNRSRISTVHKQDGQPIIYKTLMGDVSYHFVCSFGWNL FTAPAWSGKQRFWGSTRGELGVYGILQIGRSPWAFNVGTSLVGSSFAFDKKYAMQRDDEG QTILKQEPKEVGYAQTQLDLLSIEMPIGLSLSWGETNAWSSLSIVPKFVCLQKSRTRSLD ERVNTLVDDDLNVRPFGLDLRGEIGYGFFGLFGRVSLLSTIPSAQAEVSTRDYSIGIVGR F >gi|228307942|gb|ACLR01000124.1| GENE 27 36059 - 37057 634 332 aa, chain + ## HITS:1 COG:no KEGG:Cpin_2931 NR:ns ## KEGG: Cpin_2931 # Name: not_defined # Def: GSCFA domain protein # Organism: C.pinensis # Pathway: not_defined # 15 306 10 295 326 194 37.0 4e-48 MLTSRSIQWFTPIQIAPLPTSIAGRYGDRILTLGSCFSEHMGEHMRHLGYDVLVNPYGTL YNPISICDTLEDLLLDEQNQPDYTPYIIERDGLYYSLRHHSAIYGESQEALREATAQLWH TAHSRLAEADWLWITLGTTQVYYLAEEGHAVANCQQLPARLFDRRDLPLDLLQERMLATL SQLLKHHPLQIVLTVSPVRYLQDGLAESNLSKSKLRILCDTLCRELPACHYFPAYEILHD ELRDYRFYARDLTHPSDEAVAYIADHFVAYWASQEARDVEMRQAAQRLRKLAQHRPKTPH GAERLQTQIAERIAHCRERYGEKLCIASVVEP >gi|228307942|gb|ACLR01000124.1| GENE 28 37081 - 39588 2527 835 aa, chain + ## HITS:1 COG:CAC0492 KEGG:ns NR:ns ## COG: CAC0492 COG0787 # Protein_GI_number: 15893783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Clostridium acetobutylicum # 472 835 11 376 386 183 31.0 1e-45 MSTLQNILEYLRPIQTHLVDERPIRHILTDSRKLTSPSDSLFFAMRTASGDGHKYIPQLY EHGVRAFFICEPIEPYVERYPDANIVQVQETLRALQQIASHWRMRYNYPVIGITGSNGKT VVKEFLYHLLSGCYRIVRSPKSYNSQLGVPLSILNMEEEHTLAIFEAGISMPMEMLRLQR IIRPTLGILTNIGAAHQENFVSLNQKIEEKLQLFVDADHFVYDADSDEIQRGIDNLGLSD KAIGWSLTPGKAYYHVSYSHSGDGTTIITVQHADESSTVTIPFADQASIQNATHCLCLIG LLPLTTAQRQAVLARFATLEAIEMRLEVKEGQAGNRLINDAYNNDINSLRIALDFQKQRT ATSHQQAVIILSDILQSAQLPRDLYKQVGEMIAQYPHTLFIGVGRELCNYQDYFQRSGEG KTAFYETTDQLLADDLLGTITHAEILVKGARQFQFERIVQHLAKQVHETTLEIDLEALVN NLKSYKALLSPETRIIVMAKAQGYGIGAYELAKALEQQDLAALAVALADEGKELRSKGIL LPIIVMNPEVEAFEVMTQSRLEPEIYNERILREFARHVERQGLSHYPVHIELDTGMHRTG FTPDRATLEHLAQTLHEVEPLIRVQSIFTHLAAADEPMMSDFTEQQFALYDEGADYLTSQ LSYRPLRHVQNTAGMERYNHHHYDMARLGVGLYGISATGSLTLEPVAKLRTTLLQIKTIP DGETIGYGRRGQVAPGGQIGIIPIGYADGYDRRFSCGVGSVMIHDTLCPIVGNVCMDTCM VDLTALQGKVAEGDEVIIFGVPGLQVSDLAERIGTIPYEVISKLSPRIKRTYYKS >gi|228307942|gb|ACLR01000124.1| GENE 29 39717 - 40622 1341 301 aa, chain + ## HITS:1 COG:SPy2083 KEGG:ns NR:ns ## COG: SPy2083 COG3643 # Protein_GI_number: 15675841 # Func_class: E Amino acid transport and metabolism # Function: Glutamate formiminotransferase # Organism: Streptococcus pyogenes M1 GAS # 6 300 3 298 299 353 55.0 3e-97 MAIQTKIVECVPNFSEGRDKAKIEQIVQPFRETKGVKLLDYSNDEDHNRCVVTVMGEPEA VRKSVIAAVEVAVKVIDMTKHEGQHPRMGAVDVIPFIPIRNMEMEEAIELSKEVGKEIGE RIGVPVFLYEKSATAPHRENLAKIRKGQFEGMAEKIHEDEWHPDFGPADIHPTAGVVAVG ARMPLVAYNVNLNTADLSIADAIAKKVRHIGGGLRFCKAMGVELTDRHIVQVSMNLTDYT KTAVYRAHEMVRMEARRYGVEIVGAEVIGLVPMKALIDCAEYYLGIENFCETQILELRMM E >gi|228307942|gb|ACLR01000124.1| GENE 30 40737 - 42011 1484 424 aa, chain + ## HITS:1 COG:FN0740 KEGG:ns NR:ns ## COG: FN0740 COG1228 # Protein_GI_number: 19704075 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Fusobacterium nucleatum # 2 412 3 409 413 375 46.0 1e-103 MSNLYLYNIGQIVTRPGSTAQHGAEAMRQIGVIEGPAAIIVRQGKIAFVGTMQEAEQVDH TDCVAYDAQGGCVLPGFVDSHTHLIFGGYREDEFQWRLAGDSYMSIMERGGGIANTMKAT RSATAEELTQRASAHLDAMLSMGVTTVEAKSGYGMELDTEIKQLEVIRTLQKQHPIDLYP TFMGAHDTPPEYKGRSTDFIHYLCDTVMPVVVERGLAECCDIFTEQGVFDHEQTRILLTR AKELGLKVKMHADEIVSFGGAELAAELGCLSADHLLQISDKGIQALAQSDTVATCLPCTA FSLGEKYAPARRMIDAGCAVAVASDLNPGSCFSSSIPLMFALATIYMGMTVEEAVTALTL NGAAAIGRADQIGSIEVGKAGDLALLRFPSYKFLSYHFGVNLVRATIKAGTVYENKLVTP TPSV >gi|228307942|gb|ACLR01000124.1| GENE 31 42064 - 42699 816 211 aa, chain + ## HITS:1 COG:FN0739 KEGG:ns NR:ns ## COG: FN0739 COG3404 # Protein_GI_number: 19704074 # Func_class: E Amino acid transport and metabolism # Function: Methenyl tetrahydrofolate cyclohydrolase # Organism: Fusobacterium nucleatum # 5 187 3 189 212 137 43.0 2e-32 MNNSLTDLTVKGLLDVTAGKDPVPGGGSISALSGSIAAALTEMVAGLTIGKKKYAEVEEQ MKELVERVQKIRQQLILDVDRDSEAYNVVFAAFQMPKETDEEKAARSAQIQEATKIAANV PMEVARRVYSLLSDIEEVVSNGNQNAVTDGCVAMMSARNAIIGALFNVRINLTSIKDEQF VADMTAEADRLEREVIEREAKVIEYTKEACK >gi|228307942|gb|ACLR01000124.1| GENE 32 42706 - 44205 1928 499 aa, chain + ## HITS:1 COG:FN1406 KEGG:ns NR:ns ## COG: FN1406 COG2986 # Protein_GI_number: 19704738 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Fusobacterium nucleatum # 4 495 2 496 511 413 45.0 1e-115 MSARKSFAIGSEQLTIELCREYLENHFELTLSPEAVKRIEHCRNYLDRKVEEVDKPIYGV TTGFGSLCNRTISPDQLTKLQENIVKSHACSCGDEVAAPIIRLMLLLKAHALQIGNSGVQ VETVQRIVDMLNADVLPVVYDRGSLGASGDLAPLANLFLPLIGYGEVRYKGEKLPSCEVL GKFGWKPIKLKSKEGLALLNGTQFMSSHGVYALIQAERLKLAADWCAALSLEAFAGLDAP YDDRLHQIRPHQGQIQVAAHMRELLKGSEMIAKPKPQVQDPYSFRCVPQVHGASRDAIAY VRSVVETEINSVTDNPTVFPDDDMVVSGGNFHGQPLAIVYDFLAIALAELGNISERRVAQ LILGLRDLPEFLVANPGLNSGFMIPQYAAAAMVSQNKMYCHSAASDSIVSSNGQEDHVSM GANAATKLMPLIANLYRLFGIELLNAAQAIEFRRPMKTSERLEGFLASFRKVCPRVEDDV VMYEQMNKAEELIKTFPFE >gi|228307942|gb|ACLR01000124.1| GENE 33 44673 - 47519 3095 948 aa, chain - ## HITS:1 COG:TM1619_2 KEGG:ns NR:ns ## COG: TM1619_2 COG0749 # Protein_GI_number: 15644367 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Thermotoga maritima # 348 944 29 612 613 413 40.0 1e-114 MPTLYLLDAYALIYRAYYAFINRPLVDAQGRDTSALYGFASTLQDIIDKERPDYIAVAMD MPGGTFRHKEYPEYKANRPETPETIRFSMPYIKELVQAYQIPLLGVEGYEADDLIGTLSR QAVEAGYEVRMVTPDKDYGQLVGPHAQMFAPQRTGSGFELLGAEEITAKYGIRYPLQMID YLGLVGDSSDNVPGCPGIGKVAAQRLLEEFDTIEDIYARIDQVKPTYAKKLLAAKEQTML SRHLVTIVTDVPGVTFDPDQMKWRGPDHAAVERIFKEFAFTSLLKRIGKPAATAAQVGLF DLGGSSAAPSLPATIEVAGPVSATTPLENYKTVGVTFTEVQGYEAVSQLAKQLAGSSVVA FDTETDGLDALCAGIVGMSLCADEKQAYFIPLPESAEEATHILSPLKELMQDERVLKVAH NAKFDLEVLTRYGLPEARPLYDTMLAHYLIDADQGHSLDELAGGLLRYDTIRYKDLSPLE IFALRTDVDPKLLCDYASEDAYVTLRLYQALHKQLSPTEQRLLTEVEIPLLYVLMHMEQR GIVLDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQIMEKPR KTKTGSYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYNQ AVTATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPIGAVL LSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKTAN FGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAFGR RRQLRNLRTARGAQRGNAERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQVH DELVLNVYLDELERVTALVREAMECAWPECSVPLVVEIGTGKDWLEAH >gi|228307942|gb|ACLR01000124.1| GENE 34 47546 - 48151 518 201 aa, chain - ## HITS:1 COG:PM1056 KEGG:ns NR:ns ## COG: PM1056 COG0110 # Protein_GI_number: 15602921 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Pasteurella multocida # 57 194 49 186 203 159 57.0 2e-39 MSHTTHPLSFVPSPQPEGYRYYNIQSDTDRQLLASRCKERLQALHRIPVEERAQYHRALQ ELLGGLGEESWLVTPFFCDYGSEIEVGSHTFINSGCTILDGGHVTIGDHVLIGPSVSLYS VGHPLDLEERAAGWEFGIPIIIEDHVWIGGGCTILPGVTIGQGSVIGAGSVVTKSIPPMN LAVGNPCRVIRSLSQPTKSLD >gi|228307942|gb|ACLR01000124.1| GENE 35 48428 - 51607 3627 1059 aa, chain - ## HITS:1 COG:BB0801 KEGG:ns NR:ns ## COG: BB0801 COG0532 # Protein_GI_number: 15595146 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Borrelia burgdorferi # 411 1059 227 880 882 540 46.0 1e-153 MSIKLFSLAKELNIGVNSLVAFLHDKGKEVDNNPNTRITDDEFNLILRDFTPTFDEETVG RAKKKFLRSKSSSKAKPEAQAPASKSEASSPKEQPTESKAPATTTEEAEPDIPTAASASQ LNVVGKIELDKHNNPVSGSTTKATATKTGKTQSATKSATKSTTKSATTAKQKETMQEEPA KAKASTTAEQPKVATPAKEAQKATETKETKEEATPAESPKSSAKATTKEPAPVAPKEVET AKAKEPAPVAATKEPIPSEPKPATAKAEPAKEEPKQKAPEQPAPVASEPVAKEAPAAKPQ AETPAEATAETKGEAETEIFRIAKKEDEPQFKVVGKIDLSSFSSSRSRKSNKDKDKDNNR RKRKRISSGAVDVKSEGAKIQDDRSGKKGTRAAAPQRGERPAHNERRTGRKSKRQEPVLT PEEQDELRAKQVKETLARLNNKQTAFGRAAKSRREKREARRAEFEREQELSTQDEKVLKL TEFVTVSDLANMMNVPVTDVISTCMSIDMMVSINQRLDAETINIVAEEFGYETEFVSANV VEAITADEEPDKPEDLEPRPPVITIMGHVDHGKTSLLDCIRRSDVTAGEAGGITQHIGAY NVTLSDGRRLTVLDTPGHEAFTAMRARGAQITDIVVIVIAANDAVMPQTIEALNHASAAG VPIIFAINKIDVSGANPDKIREQLAGMNYLVEDWGGKYQVQEISAKKNIGIPDLLDKIFL EAELLELKANPHRRASGSVIESSLDKGKGYLASVLIQRGTLHIGDYILAGSYYGRVKAMY NEYNKRVDTAGLSTAVSILGFNGAPTAGDDFNVMETEQEARELAVKREQLQREQGLRTQK MLTLDDIGRRIAVGNFQQFNLIIKGDVDGSVQALANSLIELSTKEIQVSVIHQGVGQITE SDIQLATASDAVIIGFQVRPSAQARKLAEQEGVEIRTYSIIYDAIEDVRDALEGMLSPDI REQVTANLEVLQTFKVSKIGTIAGCMVTDGKIKRTDKVRVIRDGVVIHTGQLESLKRFKD EAKEVVSGLECGINIKNYNNIEVGDIIESFEEIEVRRKL >gi|228307942|gb|ACLR01000124.1| GENE 36 51721 - 53100 1641 459 aa, chain - ## HITS:1 COG:BMEI1967 KEGG:ns NR:ns ## COG: BMEI1967 COG0195 # Protein_GI_number: 17988250 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Brucella melitensis # 21 364 21 361 537 217 37.0 5e-56 MARKKEATSLKVLLTEFKELKNIDEETMLHVLEDSFRSILAKMFGSDDNFDVIINADSGD FEIWRTREVVADDAVERENEQVAYSEAREIDPEAEIGDDVTDSVDFLSFGRRAIVNLRQT LSSKILDLQKEHFYQTFIERVGEMITAEVYQVWKRETLLVDEDGNELIMPKSEQIPDEYF RKGDSVHAVIARVDNENNNPRVTLSRTSPEFLKRLFEINVPEIADGLITIKRVARIPGVR AKIAVESYDDRIDPVGSCVGMNGSRIRGIVRELHGENIDVLTYTSNDSLFIQRALSPAKV SSIELYPETAKAEVYLQPEDVPLAIGKNASNIKLASVLTGFEIEVFRDAADTTEEDIYLS EFSDEIEDWVIKMLLDIGLNTARAVLTTSRTELLQKTDLEIETIDHVLRILSSEFDLEEL EEMGLPQENIDLIKSPVPTQSEIAEAIIEDLKEDEATEE >gi|228307942|gb|ACLR01000124.1| GENE 37 53164 - 53661 564 165 aa, chain - ## HITS:1 COG:no KEGG:BVU_1353 NR:ns ## KEGG: BVU_1353 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 107 1 107 155 65 41.0 7e-10 MIDLAVLRTDIEQMLHEDEFVVEVTSSPGDQIRVVVDAMGGLPISRCVEISRAITQLHDR DEEEDYALEVSSPSLSDPWQVYEQYTRHLEAPVQAVDASGMKWHGKLIEVGARGADQLPE YVVLEVERTEIIQDGKKKKKQQIIEPHRIERDQLKRISYDLDKAL >gi|228307942|gb|ACLR01000124.1| GENE 38 53977 - 54234 444 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470375|ref|ZP_04055278.1| ribosomal protein L27 [Porphyromonas uenonis 60-3] # 1 85 1 85 85 175 100 5e-43 MAHKKGVGSSKNGRESESKRLGVKIFGGEACKAGNIIVRQRGTQHHPGENVGMGKDHTLY ALTDGTVVFSQTRGDRSFVSVATHE >gi|228307942|gb|ACLR01000124.1| GENE 39 54254 - 54571 529 105 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470391|ref|ZP_04055294.1| ribosomal protein L21 [Porphyromonas uenonis 60-3] # 1 105 1 105 105 208 100 6e-53 MYAIVEIQGQQFKVEEGRKLFVHHIREVEQGAEVTFDRVMLLDKDGAVAVGAPTIEGAQV VCEVVSPLVKGEKVLIFHKKRRKGYRKLRGHRQQFSEILVKQIVG >gi|228307942|gb|ACLR01000124.1| GENE 40 55049 - 55816 564 255 aa, chain + ## HITS:1 COG:SP1044 KEGG:ns NR:ns ## COG: SP1044 COG1397 # Protein_GI_number: 15900915 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 1 255 1 282 284 244 45.0 1e-64 MLGAIIGDIVGSRFEFANTHRTDFELFAKGCDYTDDTICTVAIADALLRGADFADTLQTW CRRYPHPKGAYGGRFHQWIYTTPPVPYRSFGNGSAMRVSPCGWLPTRDAVLSQAKASAEC THNHPEGIKGAVAIAEAIYLLRGGASKTDLKKHLEDTYHYDLTQSVDYIREHNSFDETCQ VTVPQAIVCFLAGRTFEEVIRLAISIGGDSDTIGAISGSLAEAHFGIPPEIQQRALAYLP EDMRQIVDSFRQTIR >gi|228307942|gb|ACLR01000124.1| GENE 41 56250 - 56474 88 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDVPPIVLEKAKPLLDRGGFVKYLGRSKDGDIYYGAIESCDTGFPSVFIFNGHFVREVN GFEALAISRPFLED >gi|228307942|gb|ACLR01000124.1| GENE 42 56637 - 56888 166 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470365|ref|ZP_04055268.1| ## NR: gi|228470365|ref|ZP_04055268.1| hypothetical protein PORUE0001_0498 [Porphyromonas uenonis 60-3] # 1 83 1 83 83 145 100.0 1e-33 MKNKDYTNLKDKTIFDFCTDEELIKNGFGHVVEDKEEFIRFMKENPSSNALMLLQLAVEV LHDDKLIEAIERDFSDVTIPRYE >gi|228307942|gb|ACLR01000124.1| GENE 43 56984 - 57220 168 78 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MCNLDYVYEQLTAGRDAYIIDYASDLAVHYSPKFGDEVEGKSARSAGGVTVMCPQSDELL FECTLAGDIVSKETYDCF Prediction of potential genes in microbial genomes Time: Fri May 27 09:38:02 2011 Seq name: gi|228307926|gb|ACLR01000125.1| Porphyromonas uenonis 60-3 ctg1118640599765, whole genome shotgun sequence Length of sequence - 18985 bp Number of predicted genes - 14, with homology - 13 Number of transcription units - 7, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 242 282 ## gi|228471051|ref|ZP_04055887.1| conserved hypothetical protein 2 1 Op 2 . - CDS 303 - 1337 710 ## BDI_2583 hypothetical protein 3 2 Op 1 . - CDS 1485 - 2009 432 ## FMG_1381 putative esterase 4 2 Op 2 . - CDS 2036 - 2419 324 ## FMG_1381 putative esterase - Term 2647 - 2689 11.1 5 3 Tu 1 . - CDS 2752 - 3027 441 ## - Prom 3090 - 3149 4.6 6 4 Op 1 . - CDS 3213 - 3887 687 ## PGN_1543 hypothetical protein 7 4 Op 2 . - CDS 3936 - 4346 479 ## gi|228470400|ref|ZP_04055302.1| hypothetical protein PORUE0001_1669 8 5 Tu 1 . - CDS 4449 - 5882 2050 ## COG1027 Aspartate ammonia-lyase - Prom 5996 - 6055 3.6 9 6 Op 1 . - CDS 6845 - 8143 1740 ## CHU_0258 hypothetical protein 10 6 Op 2 . - CDS 8188 - 10347 2539 ## COG4206 Outer membrane cobalamin receptor protein 11 6 Op 3 . - CDS 10352 - 11302 1151 ## COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase - Prom 11330 - 11389 1.9 - Term 12035 - 12087 12.5 12 7 Op 1 . - CDS 12117 - 16739 2709 ## gi|228470403|ref|ZP_04055305.1| hypothetical protein PORUE0001_1675 13 7 Op 2 . - CDS 16826 - 18250 929 ## gi|228470406|ref|ZP_04055308.1| hypothetical protein PORUE0001_1676 14 7 Op 3 . - CDS 18282 - 18983 790 ## gi|228470402|ref|ZP_04055304.1| hypothetical protein PORUE0001_1677 Predicted protein(s) >gi|228307926|gb|ACLR01000125.1| GENE 1 2 - 242 282 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471051|ref|ZP_04055887.1| ## NR: gi|228471051|ref|ZP_04055887.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 80 1 80 116 96 100.0 5e-19 MKRIFLLLTLLLNSLLTLSAQTYIYSGDKRYDYDSRVIATWDGSRLYSGDKRYDYDSRVL ATWDGTRLYSGDKRYDYDSR >gi|228307926|gb|ACLR01000125.1| GENE 2 303 - 1337 710 344 aa, chain - ## HITS:1 COG:no KEGG:BDI_2583 NR:ns ## KEGG: BDI_2583 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 11 335 10 330 337 209 36.0 1e-52 MKIVRHSWQWWLKNFLPLLIGLAILFYLYRHLELGDTLRLLQHGVRYEYLLLSLPLGLLG NVVRGYRWHLLMRPLYNPPARPINPILITIGSYAVNFVIPRAGEVWRCTEMKQREDYALS ATVGTLLVDRLSDALIVLALLVAMMLFQTGAVSQILASRGLSLGGGVGRLFSSDYATAWI IAGGVLLVTALVFYRFRKSSFMQRVRGKLRSVLQAASTLRGWRAWSQFLVLTLLLWIVYY YFFYVTFGAFAFTAELGHRVAFATFALSTLMIVVPTPAGVGPWHYAVITSLTAFGVSEAE AGQFALIVHAVQTLWTISVGVIAILLLPIINRRYKREKEYTVKG >gi|228307926|gb|ACLR01000125.1| GENE 3 1485 - 2009 432 174 aa, chain - ## HITS:1 COG:no KEGG:FMG_1381 NR:ns ## KEGG: FMG_1381 # Name: not_defined # Def: putative esterase # Organism: F.magna # Pathway: not_defined # 3 173 146 310 312 183 51.0 2e-45 MAAEEISILGFSSGACLAIGLGLHNNVQPEPLPMPRQIIAVSPGACPLSLCEGYEATADD ADLIASLEKLSAEDIITDYHYVSTIAPVLSKGQKLPAYMLNSCVGDFSHFPKTYLYYGSC ECFYACAPYFKEAFVRYGVPYEIHVGEGLCHCYPLFRFFPEGRRAQDEIIDRLK >gi|228307926|gb|ACLR01000125.1| GENE 4 2036 - 2419 324 127 aa, chain - ## HITS:1 COG:no KEGG:FMG_1381 NR:ns ## KEGG: FMG_1381 # Name: not_defined # Def: putative esterase # Organism: F.magna # Pathway: not_defined # 1 112 1 118 312 95 40.0 4e-19 MSITYSVVATIVRLLNIKKLFRMPRKKIIAFATKQCNKFKFDLNRFKGYNCSIEEVGGFS CIKLQAGPKPATKAVLQLYGGGYITPPDSRDFKLAKRIVDQTGSDVWLFLYPPSYRASPG CDLRAVL >gi|228307926|gb|ACLR01000125.1| GENE 5 2752 - 3027 441 91 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKVFVLVAAVAALSLVSCNKENQNQDAQNAEQNVENAQENLDAAAQDMQNAAQDAAQVA ADEANAAADATAEAAQATADKAQETADQIKK >gi|228307926|gb|ACLR01000125.1| GENE 6 3213 - 3887 687 224 aa, chain - ## HITS:1 COG:no KEGG:PGN_1543 NR:ns ## KEGG: PGN_1543 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 29 206 36 207 219 70 35.0 4e-11 MKSIYHKPQELARSLLLLLLGLALFGSVACTSHHRDQEMIAIDTTTLRPGSLILRRGEGM LSAFFSKVASEGQRYSHCGIIDFDSTSHRWIVWHAYQDDYLGADGIFRQPLDSFLMESEA VVIYPALALDSLGLQLMRAYIALHSPGGRYPKRFDSRFDLRDTTTLYCTEFVALAYNSTG IPDYQITPTGHVPGISHAYYTLDDLIQGLQSVQVSSDGRFSQSH >gi|228307926|gb|ACLR01000125.1| GENE 7 3936 - 4346 479 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470400|ref|ZP_04055302.1| ## NR: gi|228470400|ref|ZP_04055302.1| hypothetical protein PORUE0001_1669 [Porphyromonas uenonis 60-3] # 14 136 1 123 123 210 100.0 2e-53 MKRLALISFALVSMLAFVACSSPTKKAEQVTMDFFKALNAGDYDKARTYTASEQAEAYVN LMSYFDSDSVKAFSQEGEPERTTKIASSEDHQDTIICYVETTEQQSEPADSADVFKQKVV LTKVDNEWKIVDIPMK >gi|228307926|gb|ACLR01000125.1| GENE 8 4449 - 5882 2050 477 aa, chain - ## HITS:1 COG:PA5429 KEGG:ns NR:ns ## COG: PA5429 COG1027 # Protein_GI_number: 15600622 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Pseudomonas aeruginosa # 7 465 8 467 474 491 55.0 1e-138 MANKQMRTEGDLLGDRQLPADALYGVQTLRGMENFQISNFKLSQCAYFIKGLAYTKWGAA VANHSEGILTDEQYEAIVFACKELIAGKHHDAFAVDMIQGGAGTTTNMAANEVICNIALQ KMGHQPGEYKYLAPNDGVNASQSTNDAYPTAIHLGLYPKGLEVYKHIEQLVAALRAKAEE MKHVLKIGRTQLQDAVPMTLGQTFHGFASILEEELPRLKSACEEFLTVNMGATAIGTGIA SEPGYAEACVKALAEITGWPVQLSADLVGATSDTSVMIGYSSALRRIAVKINKICNDIRL LSSGPRAGIGEFNVPAVQPGSSIMPGKVNPVIPEVMSQVCYKVMGNDTTVLMAGDAAQME LNAMEPVMAQCCFESSDLMMRGITTLIERCITGITPNEERCRQQIEASITIVTALNPIIG YKNSTKIAKEALETGKGIYELVLEHGILDKKDLDEVMDPKHMTQPSKLDHIKPKKQL >gi|228307926|gb|ACLR01000125.1| GENE 9 6845 - 8143 1740 432 aa, chain - ## HITS:1 COG:no KEGG:CHU_0258 NR:ns ## KEGG: CHU_0258 # Name: not_defined # Def: hypothetical protein # Organism: C.hutchinsonii # Pathway: not_defined # 57 306 46 280 397 71 26.0 6e-11 MTKAYRLLAALVVALVTLSFTACDPDTPQPEQEITVGYDLWIPLGGATGQSTANKDAHII ARVADLTTGALSIKGQGVETSASTITPNVVYHKGYYYSVSRKGDFSKFRVSSTGIETIKE IPMPQILDRRFSHAWLDDNTLVLVSSVGDKQEMSWVKVDVNKMAIVSEGKLDLPKPAEGE LFNSSGLLGYRKADNMLIFPHVYMEKSKKTAMALPPKRNEIYIAFIDASTMQVKKIDKDP RCEHLSSTSFGETRSQKTFFDSKGNFYFATATCNIPENAKKKSGTKQRSFLFRVNAGSME TDKSFDGYAQPRGKIITVFPLNDDEVLLYMQDPDFKEKGNTNWSSKDNRYIYYWLRCNMK THQVEHIKDIPFSNGNFGQLVVRNGDLVSIGANVEGAPTTIYQYNLNTRKVTKGATLADG FELDRITPVVKE >gi|228307926|gb|ACLR01000125.1| GENE 10 8188 - 10347 2539 719 aa, chain - ## HITS:1 COG:BMEI0657 KEGG:ns NR:ns ## COG: BMEI0657 COG4206 # Protein_GI_number: 17986940 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Brucella melitensis # 40 165 15 143 599 71 33.0 7e-12 MRRSYLYLFLLLASCVLPLTAQRKTRTQPHDTIDYKNLGEVIVVAPTHRRIMQQQTLSAI SLDVKPLIASMGSLNELVAQSSGVRLRESGGVGSSNELSINGLSGSAVRYFINGVPLSSM GEGASLATLPVNLIDRVEIYKGVVPPELGMDALGGAVNIVTNSRGESYLDCSLRGGSFHT FALDLAGQYREQRSGFTVRPTLRYQYSKNDYIMRGMEVWNGEKQEYEQRDFRRFHDGYQS ILGRLQLGVTKKPWADAALLGVGYTKSASEIQTGFRQTLVIGEAMRDRDDLSFSAHYAKR NLFTPGLSATLDASFARNHIMITDTAYRKYSWDGTFVETHYSELMRRTRMIRHTVRPSWT ARANLAYSIPQGGDLNFNYQMSSIANERYDTYDPDFESSRDRMAQHIFGLSYGTTLLHGR LRGMIFAKDYLYHVAIEQADMYWLTGVKDVPTQQTKNKLGYGLGLRYTIADELAVKASFE RATRLPTARELMGNGANIYPNFKLQPEQAYNLNLTLYGQAQWAGLHFLNYEATAFYRNVS NYIHRVVLGDVESQYENVGSSLVLGGEMEVKYNYANLLDLTLNGTYTDERDRTHINVYGQ PNPTYGYRIPNDPFLYGNLLLGANWRKPFGIQASAIHFNAGLGYIHWFYLTWAAFGRKNT KAVIPTSYDLSAGVTWSFAHDRYSISLQSSNLLDRPLYDNYMLQKPGRAFYCKLRIFLN >gi|228307926|gb|ACLR01000125.1| GENE 11 10352 - 11302 1151 316 aa, chain - ## HITS:1 COG:FN1263 KEGG:ns NR:ns ## COG: FN1263 COG4822 # Protein_GI_number: 19704598 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiK, Co2+ chelatase # Organism: Fusobacterium nucleatum # 40 301 13 278 283 181 36.0 2e-45 MMQRLLLLYMTLLLGGLSLQAGNKIFETDSLFAAMAPGDKGAILVVHFGTTHDDTRRVTL DAINKRIASAYPNLEVRQAYSSRIVRKRLAARGIEIPTPGEALKELAREGFTHLLVVSTT IVDGVEMESLSYEVAHQQSHFKKIRLVTPLLFYESDYKDLTAIMTAHLEPDVAYLWVGHG TYDSATAQYAMLDHYLQRHGYGQVIVGCVEGYPYYEEALERLRATGLKRVCLQPLMIVAG EHAQEDMLQEWQPRLEKLGYQVESVVRGLGELPEVQEMILRKVDFFMTHRRLSIMDKKAI YEETGEKLHQSDSIAQ >gi|228307926|gb|ACLR01000125.1| GENE 12 12117 - 16739 2709 1540 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470403|ref|ZP_04055305.1| ## NR: gi|228470403|ref|ZP_04055305.1| hypothetical protein PORUE0001_1675 [Porphyromonas uenonis 60-3] # 1 1540 1 1540 1540 3129 100.0 0 MKQYNSTTLVRTIWSLLLVLSALCLIPTTAEAQLRVSSASRATIKGFRGGSGQIRLTLSR GKAPYTVKLTAYPPEYPGPFLFTSSNDEIIIYNLPKGDYKLEVSDDNGSVETVSRSVKEK GVGLNEFRVNAKWSQLHTSNAKKSRWISTRIFDPDNSIVPRYYSSEIDSIAKYFDIAICV PNDYFNGYMKGQDNLNWWDLKEAKTPPTFEGDHGCWLVQDPVYDDNLQPTGQTVQRSHLF VKVPDNMLSANKTYYESDRWANDPSNTKMIGVAIRVKESTDPNDSYFTYAKDLFDGRQSF DPNNWLEVTNTKLLPCAPYRPLFSIKKEAVKRLGLKFPVTIKVRNRFKEYNASVLTLTFT EDNYTTPQTFDEDDGGLGFADWNRIYMYDNDGHDSSLGLNPMGLSLGKEKHKPHALLAHY YRDSKKYRYWDEHRGWVTRPGDGKIGFDYCAGTRDVVYAITLWETYYGYSYKNSFANATV TLLKAPPGYTPQNKYFPKIGEPIHIKKYHTSSDFFPFPNSEAPEDTPYMAPCYDVKIPEG VYIFRIQYINVCDKEVTFFGDVGENFAFMYDNVQYKFSADAQDLKPQYEKVGCDKIRVYP FRGAKSRNILLRNGEPVPVYAMAVQTAKSGGRRRRSISFDPANLAQNPDSCYIVLPWRNS TVEIQYNFEPIRPRTEILKCLNQGKNKLVIDTTPPTYDRDQLYTYTCPSGKTAYVSVLPI HTAGETLVELRDVKDKNKLYASATLPMTDQGKPVVFNLTGEQIQPEYMLYIKTGSNDENC PLDNGGEIIKMNDLRGSSFIIGAANTKYCVGDEVTLECPPVTPESEYTWTKPDGTKITGR KITVGVATVELSGKWKLEISNVPCDGATATQEVPFMLYVAPLELWWRTDAGSPDWNSLDN WADKDGKPIKAIPAKCTDVHLPAVVKNYYPNLDPKMTKREPLGEPVCNDIYFHYGSALGE PQRLTEYSRAFIDYNFGVVQPDGTIQAHKAPNHKGAYDLLLDRDRWYMIATPLKNVYAGD FSLGAQPLTYQRYLKVKFYGERPKEASFDIPITKQGRSMVAYNHALAYKVEGYHPEKLGA KDHTNLNGLQGIIRLPYYENKERASFYPLHHYSKTIDRYKFNEETKKWELEGFVVDPHSY FAYFDMKDLRPLSRVDSVKRDPALDYRFLFEDDKTHTIGRTRASTGEPAGEGTDLDWVEE EIEGYTMKLTSSSKSDKYVIVGNPFMSPISSDKFFEVNKNNITKSIYIFTDGAWRYYGQQ IFGDTSDEALKTIPPLQAFMVSLRLDGTPNVYFPTAPEYSVLVDPNSSEGKGAVLRSTDE GSSKEPERHVAVKVTDAEGGYTSAVLLPEDTDEPIPALIAPEGMQTAPLVYFISPIDSSC NFVQTNVDRAVVELGVFAPTDGMLTLDFTTLAEKPFDKLSLYDRLRGTEQDLLVNPTYSY GYSERDGRRFELRMSYGNVRYEEQQDHQADLAIERTATGYRISYDQGIAGYQLYSVHGYL LERATTDGQTQVDIEMPETDVVLLDVQSADGLRWIKKLQR >gi|228307926|gb|ACLR01000125.1| GENE 13 16826 - 18250 929 474 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470406|ref|ZP_04055308.1| ## NR: gi|228470406|ref|ZP_04055308.1| hypothetical protein PORUE0001_1676 [Porphyromonas uenonis 60-3] # 1 474 1 474 474 934 100.0 0 MNRLRYTHIYTFLLILGALLTSTSCVRDYNTLECEDDGNKYLTLTLSLAPSGNEGLRTQG PDYSINSDKDNREDYVNDLRIFLIQNGVIKKNVFFTNLVPKYSYDDYSSGSEDDGVSYNY KSGKAQVTFRLTENELGEYDLVVVANEGAYTNPPSIEGKIKELPIDREKEREEEADAALR KALREAQTLKDLKKIRIPVTRRYSDTHQGIAYEGKWLDTEYPYVKVLSPMTAEYKKVDFS EGGTKENPRKIVLPTQTGGIELLRTFAKVDITIKDCVLLYWEDGEEKLRWRGPWGFGREM RFKLRNVPEEVNLFPIPEYSKAQDFIIDDIGRVKYPGPDDPQEDFVKDLEEKRKEIKKNG LPIGGGYLLDYRHYFYIPEKLVSRDAEGEKNALQMIYVWSHIKGPDPWQEISEPALTTME TKVETFDFDKKNAGASKYLEPLPAGFAPSDKSVFRNSLYKITITPYRYEFPQPK >gi|228307926|gb|ACLR01000125.1| GENE 14 18282 - 18983 790 233 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470402|ref|ZP_04055304.1| ## NR: gi|228470402|ref|ZP_04055304.1| hypothetical protein PORUE0001_1677 [Porphyromonas uenonis 60-3] # 1 233 1 233 233 459 100.0 1e-128 RIEIPVPNECGETYRYTIWVGATPQHYTMSDLAPASGNKHPDCRLALRLNEQDRHEGLLP EPLYFATDTIECPMPPRGSTIRVPVAPNLTRYSNDFDISLTELPSKIIYPLHIEIEDNNA AYDFMGQLTNPTKHVIYQAPLPNEGTTRSTRLSTLRLDDPKAKPQLSLVRSDTGAKIFTY DLKKLLAKTHDYRPECQFEYNVEIRLKSLPDNTHYAVEILIDGWTVHSYEIVL Prediction of potential genes in microbial genomes Time: Fri May 27 09:39:45 2011 Seq name: gi|228307920|gb|ACLR01000126.1| Porphyromonas uenonis 60-3 ctg1118640599503, whole genome shotgun sequence Length of sequence - 2623 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 53 - 676 691 ## BF0119 hypothetical protein 2 1 Op 2 . - CDS 683 - 1657 768 ## PG1479 conjugative transposon protein TraJ 3 1 Op 3 . - CDS 1654 - 2262 343 ## gi|228470418|ref|ZP_04055319.1| hypothetical protein PORUE0001_0131 4 1 Op 4 . - CDS 2284 - 2622 295 ## gi|228469429|ref|ZP_04054441.1| conserved hypothetical protein Predicted protein(s) >gi|228307920|gb|ACLR01000126.1| GENE 1 53 - 676 691 207 aa, chain - ## HITS:1 COG:no KEGG:BF0119 NR:ns ## KEGG: BF0119 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 207 1 207 207 253 62.0 2e-66 MDFKSLRNIENSFRRVRLYTIVFALLCMGVALSSLVSAYNFANKQREKIYVLDQGKSLIL ALAQDVEANRPVEAREHLRRFHELFFTLAPESQAIQSNISRALDMADESAYNYYTDLQEE KYYNRLISTNTSQVLTVDSISCDFNTYPYEAVVYGTQTIYRKSNVTERSLVTACSLLNTV RSDRNPQGFLITKFRVINNETRRTTPR >gi|228307920|gb|ACLR01000126.1| GENE 2 683 - 1657 768 324 aa, chain - ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 1 306 1 333 368 197 37.0 6e-49 MSFSSLYETLDRLIEQIITANLDGYMLLAQSLGALGALLYIAYRVWRSLANAEPIDVFPL LRPFVLGLLIMNFTWVTEPLNDVIGAISQGTETLCESNQGELEQARNDLQNYIEQKLEEM SDGSFFDLILGNTASLRVQVDFWIMGIVQDILQWLLDCAKLLLYTVSSFMLLILTLLGPI VFAFAIFDGFQASLVSWISRYIHLSLWLPVANILNLILNSIEIEMCRMQLADFQSGKFGC SYAMIVFYIIGLVAFTTVPTVSGWIVEAGGGGGGLTRNLTSGGSRLAGLAGARAGAVAGG AVTAGATVVASGAKKAYNFLKPKK >gi|228307920|gb|ACLR01000126.1| GENE 3 1654 - 2262 343 202 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470418|ref|ZP_04055319.1| ## NR: gi|228470418|ref|ZP_04055319.1| hypothetical protein PORUE0001_0131 [Porphyromonas uenonis 60-3] # 1 202 1 202 202 330 100.0 2e-89 MKRNHVRWLTAIITTALLLLGAGLPAKAQLIVADPSVIASDVVEFKKQFDRFAEETEKWA ALYSNVSSIVSAGQDVKKAVKAVEDLSRIPDNVLRNQRNNKYLFDSEKTKSWKKTMEILQ ECMGLVKELKSFSEPRKSSDGKTLQMSQADRYKIVKELSDKVVDLRDKAYRIVKDYDRIA MGREARANTRRMINRLNGYKSR >gi|228307920|gb|ACLR01000126.1| GENE 4 2284 - 2622 295 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469429|ref|ZP_04054441.1| ## NR: gi|228469429|ref|ZP_04054441.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 112 371 482 482 220 100.0 2e-56 NGATDVNVVFYKVLESRVVVRYDPTEIAEMSLNDLPPLMTSDGPGLHTISVRMGDDVKLS IKAKDGYRITFVASDPSGLLRPTRRTSSEAEYLINTSKHQEVEVLVHCTRQS Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:08 2011 Seq name: gi|228307918|gb|ACLR01000127.1| Porphyromonas uenonis 60-3 deg1118640599498, whole genome shotgun sequence Length of sequence - 668 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:09 2011 Seq name: gi|228307915|gb|ACLR01000128.1| Porphyromonas uenonis 60-3 deg1118640599735, whole genome shotgun sequence Length of sequence - 603 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 349 547 ## GFO_0855 IS116/IS110/IS902 family transposase Predicted protein(s) >gi|228307915|gb|ACLR01000128.1| GENE 1 2 - 349 547 115 aa, chain + ## HITS:1 COG:no KEGG:GFO_0855 NR:ns ## KEGG: GFO_0855 # Name: not_defined # Def: IS116/IS110/IS902 family transposase # Organism: G.forsetii # Pathway: not_defined # 4 97 220 314 328 76 41.0 3e-13 IVFTDNFKGWSAKKMASYCGIAPFYESSGSSVFHKSNTGGYSNRRLKGILTQAARSAITH NPTFKQYYQRMKAQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRALRA Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:12 2011 Seq name: gi|228307909|gb|ACLR01000129.1| Porphyromonas uenonis 60-3 ctg1118640599639, whole genome shotgun sequence Length of sequence - 2663 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 45 - 668 608 ## BF0119 hypothetical protein 2 1 Op 2 . - CDS 671 - 1687 755 ## PG1479 conjugative transposon protein TraJ 3 1 Op 3 . - CDS 1687 - 2292 262 ## gi|228470425|ref|ZP_04055323.1| hypothetical protein PORUE0001_0521 4 1 Op 4 . - CDS 2314 - 2538 208 ## gi|228469429|ref|ZP_04054441.1| conserved hypothetical protein Predicted protein(s) >gi|228307909|gb|ACLR01000129.1| GENE 1 45 - 668 608 207 aa, chain - ## HITS:1 COG:no KEGG:BF0119 NR:ns ## KEGG: BF0119 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 207 1 207 207 255 63.0 8e-67 MEFKSLRNIESSFRRIRLYTIVFALLCMGVALSSLVSAYNFANKQREKIYVLDQGKSLIL ALSQDVEANRPVEAREHLRRFHELFFTLAPESQAIQSNISRALDMADESAYNYYTDLQEE KYYNRLISTNTSQVLTVDSISCNFNTYPYEAVVYGTQTIYRKSNVTERSLVTACSLLNTV RSDRNPQGFLITKFRVINNETRRTTPR >gi|228307909|gb|ACLR01000129.1| GENE 2 671 - 1687 755 338 aa, chain - ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 5 320 3 343 368 194 37.0 3e-48 MNEGFLSLYEQLDTIREQVVTANLESYMLLATSLGALGALLYISYRVWRSLANAEPIDVF PLLRPFVLGLLIMNFTWVTGVLDGVAGAIIEGTEAVAESNREELQSVRDRLKAAEDADLA KKQAETKEDTAWYEINWDGKMLELKQGLMDMLRDFLQWLMEVAKLILYTVASFMLLIMTI LGPVVFAFAIFDGFQQGLVSWIARYIHLSLWLPVANILQVMVNSIEIHMSNLQIASLNGG GKDASMWFMIMFYIIGLVAFTTVPTVSGWIVEAGSGGGGLTRTLTSMGSRGAALAGGAAG GAVAMGWKAGLNKFRAPKREQKRVNEIAKGIRKGFSDD >gi|228307909|gb|ACLR01000129.1| GENE 3 1687 - 2292 262 201 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470425|ref|ZP_04055323.1| ## NR: gi|228470425|ref|ZP_04055323.1| hypothetical protein PORUE0001_0521 [Porphyromonas uenonis 60-3] # 1 201 1 201 201 351 100.0 1e-95 MKRNHVRWLTAIITTALLLLGAGLPAKAQLPVVDPSIIASDFVNLGKEIAQAKKQYDEFV RVYGQVADFISTCKDVKTAYKAVEDLSRIPDEVLRSQRNNKYLYDFEKIKCRDQTYALLK ECMSIVKEMKKFTYSDTDPSNKGRLKLSDGDRLSLIKELKDEIVTLRNKAYQIVGYYNKL SQSRSEKATTQRLFDQLNGYK >gi|228307909|gb|ACLR01000129.1| GENE 4 2314 - 2538 208 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469429|ref|ZP_04054441.1| ## NR: gi|228469429|ref|ZP_04054441.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 74 409 482 482 147 100.0 2e-34 MTSDGPGLHTISVRMGDDVKLSIKAKDGYRITFVASDPSGLLRPTRRTSSEAEYLINTSK HQEVEVLVHCTRQS Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:33 2011 Seq name: gi|228307906|gb|ACLR01000130.1| Porphyromonas uenonis 60-3 deg1118640599690, whole genome shotgun sequence Length of sequence - 552 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 41 - 551 226 ## PG1710 ISPg5, transposase Orf2 Predicted protein(s) >gi|228307906|gb|ACLR01000130.1| GENE 1 41 - 551 226 170 aa, chain + ## HITS:1 COG:no KEGG:PG1710 NR:ns ## KEGG: PG1710 # Name: not_defined # Def: ISPg5, transposase Orf2 # Organism: P.gingivalis # Pathway: not_defined # 23 170 2 153 312 99 39.0 3e-20 MRQLEQAKVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRKRKRPPQTTKGVVNHGFQDHL NTTPKYIATDHCRLTVSDITYVKCLGGFAYLSLTMDAYSRIITGFDLQPT Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:36 2011 Seq name: gi|228307903|gb|ACLR01000131.1| Porphyromonas uenonis 60-3 deg1118640599558, whole genome shotgun sequence Length of sequence - 506 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 58 - 237 75 ## Predicted protein(s) >gi|228307903|gb|ACLR01000131.1| GENE 1 58 - 237 75 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLQCQVGVALEFHPYGTTVPRHMGYVDYPSEVFRYKTIRIMEYGIQITHKHRDLFQAD Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:41 2011 Seq name: gi|228307900|gb|ACLR01000132.1| Porphyromonas uenonis 60-3 deg1118640599532, whole genome shotgun sequence Length of sequence - 630 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 248 - 307 5.5 1 1 Tu 1 . + CDS 466 - 628 179 ## gi|228469444|ref|ZP_04054452.1| succinate dehydrogenase cytochrome B subunit, b558 family Predicted protein(s) >gi|228307900|gb|ACLR01000132.1| GENE 1 466 - 628 179 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469444|ref|ZP_04054452.1| ## NR: gi|228469444|ref|ZP_04054452.1| succinate dehydrogenase cytochrome B subunit, b558 family [Porphyromonas uenonis 60-3] # 1 54 22 75 268 87 100.0 3e-16 MWIFKSSIGRKFIMSLSGLFLIIFLLLHGCINLLAVYDAINVNSEFPTELYNQA Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:46 2011 Seq name: gi|228307897|gb|ACLR01000133.1| Porphyromonas uenonis 60-3 deg1118640599671, whole genome shotgun sequence Length of sequence - 562 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 98 - 403 134 ## - Term 303 - 346 12.2 2 2 Tu 1 . - CDS 391 - 555 146 ## COG0451 Nucleoside-diphosphate-sugar epimerases Predicted protein(s) >gi|228307897|gb|ACLR01000133.1| GENE 1 98 - 403 134 101 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVLGAFTKAFVSTRKVAMRT HLRSLPRESQMKSATPERTQEWRMWMRLCQSLGICADAYLP >gi|228307897|gb|ACLR01000133.1| GENE 2 391 - 555 146 54 aa, chain - ## HITS:1 COG:SA0511 KEGG:ns NR:ns ## COG: SA0511 COG0451 # Protein_GI_number: 15926231 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 51 264 314 321 65 49.0 2e-11 MSYDVDPLRQAIAESWPNSLDDSCARREWDWQPHYDLDTMSQDMIQVLRARYGK Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:52 2011 Seq name: gi|228307894|gb|ACLR01000134.1| Porphyromonas uenonis 60-3 deg1118640599760, whole genome shotgun sequence Length of sequence - 511 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 17 - 316 388 ## PG1479 conjugative transposon protein TraJ + Term 450 - 485 2.0 Predicted protein(s) >gi|228307894|gb|ACLR01000134.1| GENE 1 17 - 316 388 99 aa, chain + ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 1 92 247 338 368 129 64.0 2e-29 MVQKDIAALSDPNYLPDSGSWYYIVFFLIGIVGYFCVPTVAGWIIEAGGGIGAYGRNVNQ TAQRGAQGAYTGGKAVAGATGSMAGNVGGRIKGALIKGK Prediction of potential genes in microbial genomes Time: Fri May 27 09:40:54 2011 Seq name: gi|228307891|gb|ACLR01000135.1| Porphyromonas uenonis 60-3 deg1118640599483, whole genome shotgun sequence Length of sequence - 579 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 202 205 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 248 - 291 12.2 2 2 Tu 1 . - CDS 179 - 496 58 ## Predicted protein(s) >gi|228307891|gb|ACLR01000135.1| GENE 1 2 - 202 205 66 aa, chain + ## HITS:1 COG:SA0511 KEGG:ns NR:ns ## COG: SA0511 COG0451 # Protein_GI_number: 15926231 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 3 63 254 314 321 73 45.0 8e-14 AAAVKRIIPDFEMSYDVDPLRQAIAESWPNSLDDSCARREWDWQPHYDLDTMSQDMIQVL RARYGK >gi|228307891|gb|ACLR01000135.1| GENE 2 179 - 496 58 105 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVLGAFTKAFVSTRKVAMRT HLRSLPRESQMKSATPERTQEWRMWMRLCQSLGDLCGCLLAVASA Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:00 2011 Seq name: gi|228307887|gb|ACLR01000136.1| Porphyromonas uenonis 60-3 deg1118640599637, whole genome shotgun sequence Length of sequence - 639 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 38 - 241 278 ## gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 2 1 Op 2 . - CDS 213 - 524 404 ## BF0119 hypothetical protein Predicted protein(s) >gi|228307887|gb|ACLR01000136.1| GENE 1 38 - 241 278 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469432|ref|ZP_04054443.1| ## NR: gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 [Porphyromonas uenonis 60-3] # 1 67 1 67 67 126 100.0 5e-28 MKQDVPPLDSVGTSSTQNKVGWVKKQTDRLKAWCDKLTPEERKRLTFISMGVYLAVFLLV ITISIFK >gi|228307887|gb|ACLR01000136.1| GENE 2 213 - 524 404 103 aa, chain - ## HITS:1 COG:no KEGG:BF0119 NR:ns ## KEGG: BF0119 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 103 105 207 207 122 59.0 5e-27 MADESAYNYYTDLQEEKYYNRLISTNTSQVLTVDSISCDFNTYPYEAVVYGTQTIYRKSN VTERSLVTACSLLNTVRSDRNPQGFLITKFRVINNETRRTTPR Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:07 2011 Seq name: gi|228307884|gb|ACLR01000137.1| Porphyromonas uenonis 60-3 deg1118640599670, whole genome shotgun sequence Length of sequence - 553 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 131 - 436 134 ## Predicted protein(s) >gi|228307884|gb|ACLR01000137.1| GENE 1 131 - 436 134 101 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVLGAFTKAFVSTRKVAMRT HLRSLPRESQMKSATPERTQEWRMWMRLCQSLGICADAYLP Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:13 2011 Seq name: gi|228307880|gb|ACLR01000138.1| Porphyromonas uenonis 60-3 deg1118640599488, whole genome shotgun sequence Length of sequence - 509 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 105 - 476 442 ## gi|228469490|ref|ZP_04054492.1| hypothetical protein PORUE0001_1918 Predicted protein(s) >gi|228307880|gb|ACLR01000138.1| GENE 1 105 - 476 442 123 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469490|ref|ZP_04054492.1| ## NR: gi|228469490|ref|ZP_04054492.1| hypothetical protein PORUE0001_1918 [Porphyromonas uenonis 60-3] # 1 123 1 123 229 194 97.0 1e-48 MKQIIKTFSLVLVSLSALLFASSCKDDLKPQEQEVDFSVSCTPPQAQIEREGQMVTTQLL ITEQEVECPRPTKYSVSFAYDETVGTLLFLGKSVQSGASIPLASLTNLSLTYQAKELVGT KSK Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:19 2011 Seq name: gi|228307877|gb|ACLR01000139.1| Porphyromonas uenonis 60-3 deg1118640599752, whole genome shotgun sequence Length of sequence - 761 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 283 - 342 5.5 1 1 Tu 1 . + CDS 501 - 759 412 ## BVU_1239 putative cytochrome b subunit Predicted protein(s) >gi|228307877|gb|ACLR01000139.1| GENE 1 501 - 759 412 86 aa, chain + ## HITS:1 COG:no KEGG:BVU_1239 NR:ns ## KEGG: BVU_1239 # Name: not_defined # Def: putative cytochrome b subunit # Organism: B.vulgatus # Pathway: Citrate cycle (TCA cycle) [PATH:bvu00020]; Oxidative phosphorylation [PATH:bvu00190]; Butanoate metabolism [PATH:bvu00650]; Metabolic pathways [PATH:bvu01100]; Biosynthesis of secondary metabolites [PATH:bvu01110] # 1 86 1 77 228 62 40.0 7e-09 MWIFKSSIGRKFIMSLSGLFLIIFLLLHGCINLLAVYDAINVNSEFPTELYNQACHVMGT NILVQIMVPVLALGFIVHIIYALWLT Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:21 2011 Seq name: gi|228307873|gb|ACLR01000140.1| Porphyromonas uenonis 60-3 deg1118640599762, whole genome shotgun sequence Length of sequence - 653 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 150 72 ## gi|228469664|ref|ZP_04054637.1| conjugative transposon protein TraJ + Term 284 - 319 2.0 Predicted protein(s) >gi|228307873|gb|ACLR01000140.1| GENE 1 1 - 150 72 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469664|ref|ZP_04054637.1| ## NR: gi|228469664|ref|ZP_04054637.1| conjugative transposon protein TraJ [Porphyromonas uenonis 60-3] # 1 49 297 345 345 94 100.0 2e-18 IGAYGRNVNQTAQRGAQGAYTGGKAVAGATGSMAGNVGGRIKGALIKGK Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:26 2011 Seq name: gi|228307870|gb|ACLR01000141.1| Porphyromonas uenonis 60-3 deg1118640599674, whole genome shotgun sequence Length of sequence - 540 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 233 233 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 260 - 319 1.9 Predicted protein(s) >gi|228307870|gb|ACLR01000141.1| GENE 1 2 - 233 233 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 77 1 77 84 153 100.0 3e-36 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFCCETTGGYDRA Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:32 2011 Seq name: gi|228307864|gb|ACLR01000142.1| Porphyromonas uenonis 60-3 ctg1118640599763, whole genome shotgun sequence Length of sequence - 3297 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 387 - 1010 709 ## PG1478 conjugative transposon protein TraK 2 1 Op 2 . + CDS 1015 - 1302 235 ## gi|228470458|ref|ZP_04055343.1| conserved hypothetical protein 3 1 Op 3 . + CDS 1292 - 2539 1247 ## PG1476 conjugative transposon protein TraM 4 1 Op 4 . + CDS 2576 - 3296 656 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228307864|gb|ACLR01000142.1| GENE 1 387 - 1010 709 207 aa, chain + ## HITS:1 COG:no KEGG:PG1478 NR:ns ## KEGG: PG1478 # Name: not_defined # Def: conjugative transposon protein TraK # Organism: P.gingivalis # Pathway: not_defined # 1 207 1 207 207 311 76.0 6e-84 MEFKSLTNIETSFKQIRLYAIIFAIVCIAVSSYAVYASYSFAKKQREKVYVLDQGKSLML ALSQDASMNRPVEAREHVRRFHELFFTIAPDKDAIEKNMERAFQLCDKSAFNYYKDLAEK GYYNRAISGNVNQRIEIDSIRCDFDSYPYEVTTFARQFIIRQSNVTERSLVTSCSLQNSV RSDNNPQGFLMEHFLVRENRDIQTYKR >gi|228307864|gb|ACLR01000142.1| GENE 2 1015 - 1302 235 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470458|ref|ZP_04055343.1| ## NR: gi|228470458|ref|ZP_04055343.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 26 95 1 70 70 141 100.0 1e-32 MKRRSRPTLRRSYLRGQVRLRERCNMLTNRQRQIIVYGLSLVYLACSIWMVAQFFLPHRE EIPPIPTGELVDSPIQRDTTYIKRMEHLAISNYGA >gi|228307864|gb|ACLR01000142.1| GENE 3 1292 - 2539 1247 415 aa, chain + ## HITS:1 COG:no KEGG:PG1476 NR:ns ## KEGG: PG1476 # Name: not_defined # Def: conjugative transposon protein TraM # Organism: P.gingivalis # Pathway: not_defined # 14 415 45 453 453 370 52.0 1e-101 MEHKQKEQLKKVLVFAGLGIIFALAMWFIFAPDTKEQTDAGEGLNDNIPQATTEKLTENK LKAYELVDHTTQEEQAREEVGRLAEYFQQEGSSSESNPQEAVVGNKIESSMQRYEENNRL LVDFYGSDPYEEEREAMQQEIDDLRRELHELSQQDDDEEAKQLALMEKSYQMAAKYLPAA GASPAHGAMPMGEQSQMVSPPSGGAAKEEAPMEIIADHKPLVSALDQPMSDEEFMEMYGA KERNMSFHSLSNSSVHSGERNTLCVVVDKTTTLKEGDYVALRLLETARVQQTSIPKHSLL MAQAKIDGNRMQLLIKSIEVNGRILPVKLSAYDTDGQMGVYIPGSEEVSALKEMGANVGG SMGTSFTFSSSAKDQIISEVTRGVMQGAGQLLQKKLRTIKVTLKGGYRLFLVQTK >gi|228307864|gb|ACLR01000142.1| GENE 4 2576 - 3296 656 240 aa, chain + ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 240 1 268 341 362 66.0 5e-99 MKKWILSIVVCATITLPAMAQQVEGNNQLLSSGDLYQGMSRSIPNGRVVLPYGLEVTFEK TVHLIFPAAIRYVDLGSQNIIAGKADDAENVLRVKAAVREFETETNMSVICEDGSFYAFN VKYADEPEKLSMEMKDFLAPTEGRLPSNRADIYFKELGSESPILVKLIMKSIYQNDKRII KHVGAKQFGMRFLLRGLYAHNGLLYFHVRMDNESNMPYAVDFITFKVVDKKVAKHTAIQE Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:49 2011 Seq name: gi|228307861|gb|ACLR01000143.1| Porphyromonas uenonis 60-3 deg1118640599542, whole genome shotgun sequence Length of sequence - 533 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 110 - 533 389 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228307861|gb|ACLR01000143.1| GENE 1 110 - 533 389 141 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 40 141 123 225 294 77 39.0 9e-15 MLLRSRRRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSL TMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMT DYEASLGIVTSVTQTGNPLHN Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:50 2011 Seq name: gi|228307859|gb|ACLR01000144.1| Porphyromonas uenonis 60-3 deg1118640599739, whole genome shotgun sequence Length of sequence - 611 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:50 2011 Seq name: gi|228307856|gb|ACLR01000145.1| Porphyromonas uenonis 60-3 deg1118640599552, whole genome shotgun sequence Length of sequence - 516 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 33 - 455 403 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228307856|gb|ACLR01000145.1| GENE 1 33 - 455 403 140 aa, chain - ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 9 74 145 209 227 59 47.0 2e-09 MTDYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALY NTARPHRALNKKTPMQMLIPDYPNPLTTQPPKNQISKNDSPTAPSLKTPSPCRPTPNKEL SLCTSAVKTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:50 2011 Seq name: gi|228307853|gb|ACLR01000146.1| Porphyromonas uenonis 60-3 deg1118640599522, whole genome shotgun sequence Length of sequence - 503 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:41:51 2011 Seq name: gi|228307848|gb|ACLR01000147.1| Porphyromonas uenonis 60-3 deg1118640599537, whole genome shotgun sequence Length of sequence - 557 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 177 165 ## gi|228469935|ref|ZP_04054866.1| putative transposase 2 1 Op 2 . + CDS 180 - 555 102 ## gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 Predicted protein(s) >gi|228307848|gb|ACLR01000147.1| GENE 1 1 - 177 165 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469935|ref|ZP_04054866.1| ## NR: gi|228469935|ref|ZP_04054866.1| putative transposase [Porphyromonas uenonis 60-3] # 1 58 64 121 121 97 100.0 2e-19 SKTNKNKAVDPDYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTDL >gi|228307848|gb|ACLR01000147.1| GENE 2 180 - 555 102 125 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470428|ref|ZP_04055325.1| ## NR: gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 [Porphyromonas uenonis 60-3] # 1 125 1 125 171 248 97.0 7e-65 MRQLESAQVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRRRKRPPQTTKGVVNHGFQDHL NTTPK Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:02 2011 Seq name: gi|228307845|gb|ACLR01000148.1| Porphyromonas uenonis 60-3 deg1118640599698, whole genome shotgun sequence Length of sequence - 545 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 36 - 95 2.9 1 1 Tu 1 . + CDS 130 - 544 447 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228307845|gb|ACLR01000148.1| GENE 1 130 - 544 447 138 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 131 85 209 227 85 39.0 2e-17 MDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTD YEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTA RPHRALNKKTPMQMLIPD Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:02 2011 Seq name: gi|228307843|gb|ACLR01000149.1| Porphyromonas uenonis 60-3 deg1118640599741, whole genome shotgun sequence Length of sequence - 545 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:03 2011 Seq name: gi|228307840|gb|ACLR01000150.1| Porphyromonas uenonis 60-3 ctg1118640599517, whole genome shotgun sequence Length of sequence - 1005 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 146 - 352 179 ## + Prom 506 - 565 1.7 2 2 Tu 1 . + CDS 663 - 1005 385 ## COG2985 Predicted permease Predicted protein(s) >gi|228307840|gb|ACLR01000150.1| GENE 1 146 - 352 179 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRSSTTLSRKLSNSSVEIDESPRRNKKNLPNFDLLLPKFHFILPNFYFPAPWGIFICSVK LPDLLRRD >gi|228307840|gb|ACLR01000150.1| GENE 2 663 - 1005 385 114 aa, chain + ## HITS:1 COG:HI0035 KEGG:ns NR:ns ## COG: HI0035 COG2985 # Protein_GI_number: 16272010 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Haemophilus influenzae # 20 112 7 103 551 62 39.0 2e-10 MDSLRAFFNELFVIPSVPQSIIVISLVSLVGLLLARIRIARISLGVTFVFFVGILLSYWG ITLEARTLDFGMNFGLILFIYALGLQVGPAFFPSLKKGGIQDNIDSLLLVVVNI Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:08 2011 Seq name: gi|228307837|gb|ACLR01000151.1| Porphyromonas uenonis 60-3 deg1118640599549, whole genome shotgun sequence Length of sequence - 507 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 72 - 507 448 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228307837|gb|ACLR01000151.1| GENE 1 72 - 507 448 145 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 131 85 209 227 85 40.0 3e-17 MDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTD YEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALYNTA RPHRALNKKTPMQMRIPDYPNPLTT Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:12 2011 Seq name: gi|228307835|gb|ACLR01000152.1| Porphyromonas uenonis 60-3 deg1118640599623, whole genome shotgun sequence Length of sequence - 6019 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 515 - 1972 99.0 # AY570514 [D:1..1457] # 16S ribosomal RNA # Porphyromonas uenonis # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas. + TRNA 2410 - 2486 78.7 # Ile GAT 0 0 + TRNA 2525 - 2598 86.8 # Ala TGC 0 0 + LSU_RRNA 4381 - 5613 92.0 # AE015924 [D:121865..124698] # 23S ribosomal RNA # Porphyromonas gingivalis W83 # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas. + 5S_RRNA 5798 - 5874 93.0 # AE015924 [D:124845..124952] # 5S ribosomal RNA # Porphyromonas gingivalis W83 # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas. Predicted protein(s) Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:13 2011 Seq name: gi|228307831|gb|ACLR01000153.1| Porphyromonas uenonis 60-3 deg1118640599686, whole genome shotgun sequence Length of sequence - 558 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 5 - 199 204 ## gi|228471086|ref|ZP_04055918.1| transposase IS3/family protein 2 1 Op 2 . + CDS 186 - 558 64 ## gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 Predicted protein(s) >gi|228307831|gb|ACLR01000153.1| GENE 1 5 - 199 204 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471086|ref|ZP_04055918.1| ## NR: gi|228471086|ref|ZP_04055918.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 64 62 125 125 112 100.0 7e-24 MSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKRPICS RETA >gi|228307831|gb|ACLR01000153.1| GENE 2 186 - 558 64 124 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470428|ref|ZP_04055325.1| ## NR: gi|228470428|ref|ZP_04055325.1| ISPg5, transposase Orf2 [Porphyromonas uenonis 60-3] # 1 124 1 124 171 251 100.0 1e-65 MRQLEQAKVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRKRKRPPQTTKGVVNHGFQDHL NTTP Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:23 2011 Seq name: gi|228307827|gb|ACLR01000154.1| Porphyromonas uenonis 60-3 deg1118640599733, whole genome shotgun sequence Length of sequence - 968 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 126 56 ## gi|228470695|ref|ZP_04055546.1| ribonuclease III + Term 275 - 306 4.1 + Prom 663 - 722 1.5 2 2 Tu 1 . + CDS 767 - 968 248 ## gi|228469938|ref|ZP_04054867.1| transposase Predicted protein(s) >gi|228307827|gb|ACLR01000154.1| GENE 1 1 - 126 56 41 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470695|ref|ZP_04055546.1| ## NR: gi|228470695|ref|ZP_04055546.1| ribonuclease III [Porphyromonas uenonis 60-3] # 1 41 203 243 243 80 100.0 3e-14 IDGKPVGRGAGSSKKRAQQEAARDTLELLKQAYSAIQSRTS >gi|228307827|gb|ACLR01000154.1| GENE 2 767 - 968 248 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 67 1 67 84 134 100.0 1e-30 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFC Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:32 2011 Seq name: gi|228307826|gb|ACLR01000155.1| Porphyromonas uenonis 60-3 deg1118640599603, whole genome shotgun sequence Length of sequence - 682 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 273 272 ## - Prom 297 - 356 3.4 Predicted protein(s) >gi|228307826|gb|ACLR01000155.1| GENE 1 3 - 273 272 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFQFTHPVWGATTMTRDGLNTLKVSIHAPRVGCDSLRTDSVSSQNCFNSRTPCGVATYYI LSQTILSQVSIHAPRVGCDHAARNARLASE Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:37 2011 Seq name: gi|228307823|gb|ACLR01000156.1| Porphyromonas uenonis 60-3 deg1118640599705, whole genome shotgun sequence Length of sequence - 562 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 49 - 471 414 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228307823|gb|ACLR01000156.1| GENE 1 49 - 471 414 140 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 9 74 145 209 227 59 47.0 2e-09 MTDYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALY NTARPHRALNKKTPMQMLIPDYPNPLTTQPPKNQISKNDSPTAPSLKTPSPCRPTPNKEL SLCTSAVKTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:38 2011 Seq name: gi|228307820|gb|ACLR01000157.1| Porphyromonas uenonis 60-3 deg1118640599521, whole genome shotgun sequence Length of sequence - 600 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 105 - 164 3.9 1 1 Tu 1 . + CDS 237 - 600 457 ## COG2987 Urocanate hydratase Predicted protein(s) >gi|228307820|gb|ACLR01000157.1| GENE 1 237 - 600 457 121 aa, chain + ## HITS:1 COG:SPy2082 KEGG:ns NR:ns ## COG: SPy2082 COG2987 # Protein_GI_number: 15675840 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Streptococcus pyogenes M1 GAS # 9 121 17 129 676 163 64.0 6e-41 MKRTCKFTLDATLPKYPTFEEGIRRAPDRGYSLTPAQTRVALQNALRYVPKELHAELAPE FLKELKERGKIYAYRYRPEGDLKAGPIDSYKGKCIEGKAFQVMIHNNLSHAVALYPYELV T Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:38 2011 Seq name: gi|228307816|gb|ACLR01000158.1| Porphyromonas uenonis 60-3 deg1118640599646, whole genome shotgun sequence Length of sequence - 912 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 267 121 ## gi|228470490|ref|ZP_04055359.1| hypothetical protein PORUE0001_1949 - Prom 292 - 351 3.1 2 2 Tu 1 . - CDS 523 - 867 156 ## gi|228471473|ref|ZP_04056257.1| hypothetical protein PORUE0001_0047 Predicted protein(s) >gi|228307816|gb|ACLR01000158.1| GENE 1 3 - 267 121 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470490|ref|ZP_04055359.1| ## NR: gi|228470490|ref|ZP_04055359.1| hypothetical protein PORUE0001_1949 [Porphyromonas uenonis 60-3] # 1 88 72 159 160 159 100.0 4e-38 MTQLQPRAREAKFLGAYDGQLSLTDVSPHKGLREQEALAFVDYFNSKLATKQANIPALRS LQGSRLAELNARLREYGADALLEAVDNL >gi|228307816|gb|ACLR01000158.1| GENE 2 523 - 867 156 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471473|ref|ZP_04056257.1| ## NR: gi|228471473|ref|ZP_04056257.1| hypothetical protein PORUE0001_0047 [Porphyromonas uenonis 60-3] # 1 104 1 104 162 193 100.0 3e-48 MKEKSFQFRSSWYEAITQLPDSSQGVAYSLIMGYALKGLEPDLATVPALVQGVFLVVREQ IDADAHRQAEISSIRKTCGKLGGRPRKSEQGAKASTTTPNKGVTTNQLWTVVRS Prediction of potential genes in microbial genomes Time: Fri May 27 09:42:50 2011 Seq name: gi|228307813|gb|ACLR01000159.1| Porphyromonas uenonis 60-3 deg1118640599541, whole genome shotgun sequence Length of sequence - 500 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 217 201 ## gi|228469762|ref|ZP_04054723.1| ISPg5, transposase Orf2 - Prom 359 - 418 1.9 Predicted protein(s) >gi|228307813|gb|ACLR01000159.1| GENE 1 1 - 217 201 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469762|ref|ZP_04054723.1| ## NR: gi|228469762|ref|ZP_04054723.1| ISPg5, transposase Orf2 [Porphyromonas uenonis 60-3] # 1 72 8 79 171 151 100.0 1e-35 MLLRSRRRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSL TMDAYSRIITGF Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:02 2011 Seq name: gi|228307789|gb|ACLR01000160.1| Porphyromonas uenonis 60-3 ctg1118640599722, whole genome shotgun sequence Length of sequence - 24172 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 8, operones - 5 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 9 - 380 262 ## MS2005 hypothetical protein + Prom 594 - 653 3.0 2 2 Op 1 . + CDS 738 - 2480 2423 ## COG0173 Aspartyl-tRNA synthetase 3 2 Op 2 . + CDS 2497 - 3609 1096 ## COG0327 Uncharacterized conserved protein 4 2 Op 3 . + CDS 3622 - 4509 1234 ## PGN_1990 hypothetical protein + Term 4527 - 4567 -0.8 5 3 Op 1 . + CDS 4636 - 6075 929 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 6 3 Op 2 . + CDS 6119 - 7546 1553 ## COG0116 Predicted N6-adenine-specific DNA methylase 7 3 Op 3 . + CDS 7574 - 9814 2542 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 8 3 Op 4 . + CDS 9811 - 11184 1431 ## COG0151 Phosphoribosylamine-glycine ligase + Term 11222 - 11262 9.6 9 4 Tu 1 . - CDS 11419 - 11577 94 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 - Prom 11754 - 11813 6.4 + Prom 11534 - 11593 4.0 10 5 Op 1 . + CDS 11761 - 12663 929 ## COG1462 Uncharacterized protein involved in formation of curli polymers 11 5 Op 2 . + CDS 12668 - 13018 348 ## gi|228470507|ref|ZP_04055374.1| pregnancy-specific beta 1-glycoprotein 12 5 Op 3 . + CDS 13039 - 13392 313 ## gi|228470506|ref|ZP_04055373.1| conserved hypothetical protein 13 5 Op 4 . + CDS 13389 - 14081 474 ## Sbal195_4118 hypothetical protein + Term 14156 - 14210 20.1 14 6 Op 1 . + CDS 14517 - 15827 1378 ## COG1472 Beta-glucosidase-related glycosidases 15 6 Op 2 . + CDS 15858 - 16886 1145 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase + Term 16983 - 17012 0.5 + Prom 16934 - 16993 1.8 16 7 Op 1 . + CDS 17028 - 17450 292 ## BF2599 hypothetical protein 17 7 Op 2 10/0.000 + CDS 17467 - 18426 964 ## COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB 18 7 Op 3 . + CDS 18436 - 19674 1040 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 19 7 Op 4 12/0.000 + CDS 19550 - 19789 278 ## COG4656 Predicted NADH:ubiquinone oxidoreductase, subunit RnfC 20 7 Op 5 12/0.000 + CDS 19842 - 20831 1165 ## COG4658 Predicted NADH:ubiquinone oxidoreductase, subunit RnfD 21 7 Op 6 13/0.000 + CDS 20828 - 21970 1372 ## COG4659 Predicted NADH:ubiquinone oxidoreductase, subunit RnfG 22 7 Op 7 3/0.000 + CDS 21980 - 22570 869 ## COG4660 Predicted NADH:ubiquinone oxidoreductase, subunit RnfE 23 7 Op 8 . + CDS 22635 - 23216 909 ## COG4657 Predicted NADH:ubiquinone oxidoreductase, subunit RnfA + Term 23388 - 23454 30.0 + TRNA 23358 - 23442 54.7 # Ser TGA 0 0 + Prom 23681 - 23740 2.3 24 8 Tu 1 . + CDS 23832 - 24038 179 ## Predicted protein(s) >gi|228307789|gb|ACLR01000160.1| GENE 1 9 - 380 262 123 aa, chain + ## HITS:1 COG:no KEGG:MS2005 NR:ns ## KEGG: MS2005 # Name: not_defined # Def: hypothetical protein # Organism: M.succiniciproducens # Pathway: not_defined # 1 110 103 212 212 89 36.0 5e-17 MSVGKISRITFCSQLKKWETKWDTFLKEKTINDENGKWQYTHKSLRSAHFSFRQYLPTLF TYEEHPDIQIPKTNNAIEGLFTALKSRLRAHNGMSQAHKKRFVDGFFRHRDIAQFTSKKE EGQ >gi|228307789|gb|ACLR01000160.1| GENE 2 738 - 2480 2423 580 aa, chain + ## HITS:1 COG:FN0299 KEGG:ns NR:ns ## COG: FN0299 COG0173 # Protein_GI_number: 19703644 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Fusobacterium nucleatum # 1 574 2 586 592 580 48.0 1e-165 MYRTHTCGALRASDEGQQVTLAGWVAKIRRMGAMTFLDLRDRYGITQIFFDESHQALLSE VGREWVLAVTGTVRLRSSVNEKIPTGQIEILAESMKVLNRADTPPFTIEDVSDGGDDLRM KYRYLDLRRRPVLSNIELRHRMTMETRRYLDGLHFLEIETPMLIGSTPEGARDFVVPSRM NPGQFYALPQSPQTFKQLLMVAGMDRYFQIVKCFRDEDLRADRQPEFTQIDCEMSFVEQD DILSTFEGLAKHLFKEIRGIDLPTPLRRMTWYEAMDRYGSDKPDLRFGMEIEEVTKTIQG HGFGVVDDAEYIGAIVVTGKADYTRKQIDQLTDFVKRPQVGAKGLLWLRYQADGTMKSSF DKFLTADQLKALADQLSMQPGDIAFLISGGKRTAQKQLGTLRLHVASELGLMKPGHYECL WVVDFPLLEWDEETQRYYAMHHPFTAPKPEDQDRLESDPGSVRADAYDMVINGVEVGGGS IRIHDAELQARVFAALGFTKERAEEQFGFLMNAFKYGAPPHGGIAFGLDRWVSLMAELDS IRDCIAFPKNNSGRDVMIDAPARLDPEQLDELHLTVRETL >gi|228307789|gb|ACLR01000160.1| GENE 3 2497 - 3609 1096 370 aa, chain + ## HITS:1 COG:Cgl2188_1 KEGG:ns NR:ns ## COG: Cgl2188_1 COG0327 # Protein_GI_number: 19553438 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 2 121 4 122 123 90 35.0 3e-18 MVTIGDVVRTIEECYPLSYQESYDNSGLQVGDVTQPLRGIMLAVETTEAVLEECLQRGCN LLVSHHPILFRGLKRITPATYQERCVAFALRNNIAIYACHTSADNEVSQGVNHCLANLVG LKREGRRPMMPQRGRFYKLQTFIPHSHAEALRTAYEEAGIGSLGGYTGCSYSCSGVGRFR PGAETHPTIGTHGAMEAVEEEMISVLVPQERLSQALTTLVATHPYEVPAYEVIPIVMDHP TSGLGIVGELPSELSPQEFLEHLATLPAVERIAYSNPPTQPIRRVALCGGSGGGHEFIGE ALRSGAEVYITGEAKYNDYLDVQDRLWLITLGHFESEHCTRTMLYDALSDKYRNFVIHMS DADTNPIHYF >gi|228307789|gb|ACLR01000160.1| GENE 4 3622 - 4509 1234 295 aa, chain + ## HITS:1 COG:no KEGG:PGN_1990 NR:ns ## KEGG: PGN_1990 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 12 250 11 249 251 218 58.0 3e-55 MSTNTTTHEVAERSIREKLIALKRLQETLTSIDKIKLLRGELPQAIEDLADEIEGLKTRL EKYNVAAKKLTQSVSGENQKIATANDKLAVLKEQLNAVSNNREYEHLSREIEFQELEIQL AQKHIREFNAELQGRKDDVAKLQERIKEREEDHQAKSEELEQIIAETRIEEEQLRDRANE LEAQIDERILKAFLRLRKGATNGLAVVPVEREACGGCFNHIPPQRQLEVKLHNKVIVCEY CGRVLIDPDIEEEPVELTDKQADSKKKEAKKATATKKKAAPKSTKKAASSKDNEE >gi|228307789|gb|ACLR01000160.1| GENE 5 4636 - 6075 929 479 aa, chain + ## HITS:1 COG:TM0579 KEGG:ns NR:ns ## COG: TM0579 COG0037 # Protein_GI_number: 15643345 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Thermotoga maritima # 19 234 8 228 414 126 35.0 8e-29 MRRTIEQYDLLERDSERVVIIALSGGADSTALLWGLSLLGYRCVAAHCNFHLRDDESDRD EAFVTELCAQLGVPLERASFDTYGYVATHQGVSVEMAARELRYHFFDELYERYDAQCIAL GHHLEDNVEQLMINLSQGAGVRGLRGMLPMREEGKYIRPLIDTPPRLIYDFLQTAEQPFV TDSTNADTTIRRNFVRHTLRPLFDQLNPSFDQAVASTIHILRDLEQLQDYYIRSTLPADA SQPLEIAWLRQQIAPLALLYSHFASIDCDRLVLQQLLMDCAKPERADSYARYEGRDGIIE RYRGHLIGTTSETLAHLEQATSVCLELPAIASWPAGAVLDHPLGSIKIAVHDSSETPPPA IRTLTPYSYLADYDQLLLRAPQLQLRASTDGEQWIAPLGLKGRKQLAKLLRDAKILPSRR ASTAQLIDSHTGTTLWLVGLCRSADYQLTPQTRRWAEITFSQTLIDPFEGCREPFTIAR >gi|228307789|gb|ACLR01000160.1| GENE 6 6119 - 7546 1553 475 aa, chain + ## HITS:1 COG:slr0064 KEGG:ns NR:ns ## COG: slr0064 COG0116 # Protein_GI_number: 16331495 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Synechocystis # 6 382 13 384 384 222 34.0 1e-57 MTKIFPMIAKTLPGLEPVLEQELIALGANNIQIGRRMVSYEGDLKMLYKSNLYLRTALKV LRPIYEFDAEDIDILYTTLLHFDWSQWLTADMTFAVDAVVYSSTFKHSRYVVYKTKDAIV DYFREQTSGTKRPSVKLSNPQLIFHLHIAEQHVTLCLDSSGESLHKRGYRMEQDRAPINE VLAAGILLKAGWHGQCDLMDPFCGSGTFLVEAALIATGTPPGIYRESYPFERWPDFDSEL CSEVYNDDSTERSFDYHIYGSDLSPQAIAKAKRNVTRSGMSRYIDLSVGDFADQHLPHPE AETEPKCLLVMNPPYGERLSDYDLEQLYSMIGRTLKFQFAGAQAWIIAHQVEHFHAIGLK HDLREELYNGSLPCELRGYTLFEGKHKEYKEQIAQRGEEAPQRRERGEAFHHGKGQEPRR HRSGYDKPSYSKGRGAQRTKGPRPAGSSSSGYKANIQTFGSDETFVHETEANDNE >gi|228307789|gb|ACLR01000160.1| GENE 7 7574 - 9814 2542 746 aa, chain + ## HITS:1 COG:CC2154 KEGG:ns NR:ns ## COG: CC2154 COG1506 # Protein_GI_number: 16126393 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Caulobacter vibrioides # 118 728 111 715 738 304 32.0 5e-82 MNSTLRHYALWFFGALTLTLTPLLQGQTKRPLDLETVTYGGKTFRSDFYPQPVYGLAWLQ SGYTYTVEPGDYGREGLSSLRSLRVYTPTRAQEQTVLTQGELVQLLKPYDDTDKLYPLIA YDFTPQCHYLEVELSKGLYLIDVEQKLIVGYFATGDTEKRASLLSPNERNLAVKSEEGTL LIYTLQPAGSKPQAPTLVATDEAEAAVVYGESVHQNEFGIDGGLFWSPDSRQLAFYRMDQ SMVAPYPIVDMTPHKAVVQPVRYPMAGSPSHHVTLGVFHLENQQTTYLETGGDPEHYLTN VAWHPNSQKVYIAELNRGQDHLFLNGYDVQTGARTETLFEETDAHYVEPQRPMMFVPGSR GEQFVWESRREGYRQLYLYSSTGKLIRKLTDMEGEVTDIYGFDPKGERIYFQAAYPSPLE RHIFASELKRGRTIQLSKVAGTHEATFSPDKQYYIDQLQSATIARSVMLHDCNGLQLRLI HQAPDPWRKLDMPNITVGTLLAADGKTELYYRLITPSHFDEMKEYPTIVYVYGGPHAQLV TNTPQWGASGWDLYMAQQGYIIFTLDNRGSAQRGAAFEQVIHRQVGTAEMADQMKGVEYL KSLPYVDRNRIGVYGWSFGGFMTTNLILTHPETFKVGVAGGPVMDWSRYEIMYGERYNDA PQDNPEGYQKNNLIERAKDLKGRLLLIHGTSDNVVVWQHAQAFVKACVDAKTYPDLYYYP GHKHNVIGPDRVHLNYVITRYFLEHL >gi|228307789|gb|ACLR01000160.1| GENE 8 9811 - 11184 1431 457 aa, chain + ## HITS:1 COG:AGc1152 KEGG:ns NR:ns ## COG: AGc1152 COG0151 # Protein_GI_number: 15887989 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 35 453 5 416 425 341 45.0 1e-93 MSLIYPNTKQDEKKSTDAEFMKFAKIEMVKAPQTVLLLGSGGRECAMAAAIAESKLLRKL YIAPGNAGTAAYGINVPDLNPAKHEAVSQFIATHGVTLLVCGPEAPLVDGLVDYLQEDAR HPDLLIVGPDKAGAHLEGSKEYSKEFMRRHGIPTASYETFGPQDMEEAEEFLDQLSAPFV LKADGLAAGKGVLICQDREEAEQGLGQLFSGMFGSRGQRIVIEEFLEGIECSVFVATDGT DYCVLPVAKDYKRVGDGDTGPNTGGMGAVSPVPFADEAFMQRVEERIIRPTLEGLQEEGI QYVGFLFIGLMNVAGDPYVIEYNCRLGDPETEVVLPRIESDFLELLIAMATGQVAQYNLE ISPEVAMTLVLVSKGYPGHYDKGFPIQLPEPVEGIRIYHSGTTLDEEGHVVTNGGRVLAI TARGTTIQEAQKACYRTATQTLYEGKNYRHDIGNDLL >gi|228307789|gb|ACLR01000160.1| GENE 9 11419 - 11577 94 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 49 43 91 91 76 77.0 6e-13 MKLRKKQIKVPKNFFVAPWRIAVFYRGNFDFLGCVVSGTSECVGVPRTSNSV >gi|228307789|gb|ACLR01000160.1| GENE 10 11761 - 12663 929 300 aa, chain + ## HITS:1 COG:NMA1335 KEGG:ns NR:ns ## COG: NMA1335 COG1462 # Protein_GI_number: 15794260 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein involved in formation of curli polymers # Organism: Neisseria meningitidis Z2491 # 37 207 47 220 223 97 35.0 2e-20 MKTAHLWFTLLTAVIVTCTFGQSAQGQETGKSLKWKVAIGRFSNETQYGKGIFYDRENDP IAKQAQDILAAKLVASGKFILLERSDAEAVAQEVTDGTSEGSIKADYVILGSVTEFGRKT TGQTSLFTAEKTQQVEAAVNLRLVDVATGIATYSEEAKGYANNVSKSTLGLGGTSGYDAS LGDKAISAAIDQLVENIINKCSDKPWRTYLISMDQDGTIIAGGASQGLSVGDRFDIYSKG KKVKNPQTGGFIELPGKKVGALVITMTLGETPMTEFSLVDIVEGDIDPSDLSQYYIQEIK >gi|228307789|gb|ACLR01000160.1| GENE 11 12668 - 13018 348 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470507|ref|ZP_04055374.1| ## NR: gi|228470507|ref|ZP_04055374.1| pregnancy-specific beta 1-glycoprotein [Porphyromonas uenonis 60-3] # 54 116 1 63 63 114 98.0 2e-24 MTRNTICSVLLGSLVALLLVACGTVSESTGGLTDEGFVKVVSDNSALAQTTVQVFVNNKS PESVTVLSKRKAASSQPHLYLKPGSYSIRVVDKKGNVLYNSKIFLSTRKTKIIELH >gi|228307789|gb|ACLR01000160.1| GENE 12 13039 - 13392 313 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470506|ref|ZP_04055373.1| ## NR: gi|228470506|ref|ZP_04055373.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 117 1 117 117 218 100.0 1e-55 MKRNYFISLLGLISMLTLTSCGTTSLYSWYGYDNQIHEFTKKRTPESEAKLIKTYEKLIN TPNGVRKTVQPGICAEYGYLLLKSDKKEEGLAMLKKEIELYPESAVFISRIIKQFEK >gi|228307789|gb|ACLR01000160.1| GENE 13 13389 - 14081 474 230 aa, chain + ## HITS:1 COG:no KEGG:Sbal195_4118 NR:ns ## KEGG: Sbal195_4118 # Name: not_defined # Def: hypothetical protein # Organism: S.baltica_OS195 # Pathway: not_defined # 19 217 19 222 230 111 33.0 2e-23 MKTYYKALALGLFMGLMGLLTSCGVSNPVSKGQAYAELYSQKPLSILVMPPINKTNKVEA KEAVYASLYHPLVEKGYYVFSPILSQELLQSESADDAEVFIDGSLKPFNQVYTADAALFT IIKKWRKIDLLAQIEVEIEYILKSTKDNKVLFQRSADVTVDCSAKVKTNIALLDLVVSAV STALSDNVIGARRANMFILSDLPDGKYAPNFEKDKELIAGPKDVKGVVKK >gi|228307789|gb|ACLR01000160.1| GENE 14 14517 - 15827 1378 436 aa, chain + ## HITS:1 COG:BH0675 KEGG:ns NR:ns ## COG: BH0675 COG1472 # Protein_GI_number: 15613238 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Bacillus halodurans # 73 395 135 475 686 197 34.0 3e-50 MKYTKRLERWFVSLGEVLRGRGLMRRLAVVGMSLGLLVSCAGGSTTAQQLPTHLVPMSER VSDSLVRMASDWLSTLTIEEKIGQLIIPIWEPRYDSASRDRYLRLIDQIHPGGILFRKGE PYDQYRLTHLLQERSRIPLLITADAEWGLAMRLQGTIRYPRMKLLADHCTPEEMYTLGQH MAEQCRVMGIHVSFAPVLDVNNNPKNPVIGTRSLGATPDIVISHGLALARGLEDGGVLSV AKHFPGHGNTDKDSHKTLPTVSGSLEELERVELAPFRAYIEAGLGGIMVAHLSVPALEPD VTCPTSLSHAVVTGLLREQLGFKGLIFTDGLEMRGVQRAEGLPISVAAILAGNDLLLGPL DPLASYKELLSAYRAGTLSAETIQDRCLRVLCYKLLLHAGETSERPLYNKEELYEALHTP ELVSFAEYLQNKVSKK >gi|228307789|gb|ACLR01000160.1| GENE 15 15858 - 16886 1145 342 aa, chain + ## HITS:1 COG:FN0973 KEGG:ns NR:ns ## COG: FN0973 COG0079 # Protein_GI_number: 19704308 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Fusobacterium nucleatum # 47 340 50 355 357 111 24.0 2e-24 MIKKNPTQTTNTVCPPLQFDTASWFAPELTKLAEHLNDRMVEMMRYYPEPDYKTLRTMIA KRNGLHADNIVITPGRTAGFYTIAEAFAGRRGAILVPSYQHYELAAKRYGWQLTYIPEDV ETQEIQLEGEEFCWICSPNSSTGRFRSRAELLELIKAHPQVSFIVDQSYATFTTQPTLTL SDVKSHPNIIFVSSFTQTYGLPGLRIGYVTADKKVVKEIQKVIDPWSVSTMAVEVAKYIL IHPAQFTLPIRKWQRNALELETKLRQIDGIEVMPSDAPFFLVQIHCATAAELIKYLLEEH NIAVYDATTQRGVKGEMIRITARDAADNAKLQEAIATFCEGR >gi|228307789|gb|ACLR01000160.1| GENE 16 17028 - 17450 292 140 aa, chain + ## HITS:1 COG:no KEGG:BF2599 NR:ns ## KEGG: BF2599 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 6 138 5 135 139 77 31.0 2e-13 MQPECIERSATITAIKGSEVSLTVLRPSACSHCEVAGHCHASESRLETITLDRSQLPSDI ALGDQVSLEMRSSLGMRAVLLTMVVPTLLIIAVTILLSYLEVGTLAQILIALGVAAAYML LLWLLRDRFERTFTFTVRKK >gi|228307789|gb|ACLR01000160.1| GENE 17 17467 - 18426 964 319 aa, chain + ## HITS:1 COG:MA0664 KEGG:ns NR:ns ## COG: MA0664 COG2878 # Protein_GI_number: 20089551 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB # Organism: Methanosarcina acetivorans str.C2A # 3 264 5 261 264 162 39.0 7e-40 MTILFTILVLVVIALVSAILLFITSKKFEVKEDPRIGEVAEVLPQANCGGCGHPGCAGFA KACCEASTLEGLWCPVGGEPVMTKVAEILGQSVAKSDPLVAVVRCNGTCEARPRTNTYIG ARSCKIESTLYSGETGCSYGCLGNGDCVAVCDFDAIHMNPETGLPEVDEDKCTACGACVK ACPKMIIELRKKGPKGRRLYVSCVNKDKGGVARKACANACIGCSKCFKVCPFEAITFENN LAYIDHQKCRLCRKCAAECPTGAIHEVNLPPRKEPAAKPAPAEKPAPAKAEPAKVEPAKA EPAAPAAETSSTASVPQKD >gi|228307789|gb|ACLR01000160.1| GENE 18 18436 - 19674 1040 412 aa, chain + ## HITS:1 COG:FN1596 KEGG:ns NR:ns ## COG: FN1596 COG4656 # Protein_GI_number: 19704917 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Fusobacterium nucleatum # 8 342 14 337 441 283 46.0 6e-76 MAKTFRIGGIHPHDHKISAGVPITVVAPPDEVVITLAQHIGAPATAVVNKGDKVRVGTLL GKAGGFVSANIHSSVSGTVTKVDQIMDASGFKKPAIFIKVEDDEWEEYIDQTDTLVTETD LDAKQIIDRIAEMGIVGMGGATFPTHVKLSPPPGQSADYVIINAVECEPYLTSDDALMRV KAMEIMVGCAIIMKAANAPRTLIGIEVNKPDAIRIMRDAAERAKEFLPEGQSISVVPLKK RYPQGGEKQLIDALIRKQVASGALPISTGAIVQNVGTTFAIYEAVMKHKPLIERIITVTG RAIMHPSNFKARIGTSMQTLIDAAGGYAEEPGKIIGGGPMIGSSTRKYRCPRCQRFVRTT HPHGQGVDTSSDAGLYTLWQVRVGLPYGSQPCLPHARHHLQGLGDLRAQLHR >gi|228307789|gb|ACLR01000160.1| GENE 19 19550 - 19789 278 79 aa, chain + ## HITS:1 COG:FN1596 KEGG:ns NR:ns ## COG: FN1596 COG4656 # Protein_GI_number: 19704917 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC # Organism: Fusobacterium nucleatum # 4 79 370 441 441 85 50.0 2e-17 MQDCIRCGKCVSVCPMGLNPAFLMRDTIFKDWETSEHNYIVDCIECGSCSYTCPAGRPLL DYIRVGKQTVMGIMRARKK >gi|228307789|gb|ACLR01000160.1| GENE 20 19842 - 20831 1165 329 aa, chain + ## HITS:1 COG:TM0245 KEGG:ns NR:ns ## COG: TM0245 COG4658 # Protein_GI_number: 15643017 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfD # Organism: Thermotoga maritima # 4 322 2 318 318 244 45.0 2e-64 MAQQVLVSPSPHIHSGDTISKNMYGVLIALIPAFLVMLYQFRTDALLITAISVASCMLTE WVITRFFLHRPCRLLDGSALLTGVILAFNLPASLPWWLVLLGGVVAIGIGKMAFGGLGNN IFNPALVGRVFLLISYPAQMTTWKLPARLAEQAADAVTGATPLGILKSGAIDKLPDSLQL LVGFNFSSMGEVSAIAILIGLAYMLIRRIITWHTPVAIIVSAFVLSGIMHLYNPAMYASP FFHLLTGGLLFGAVFMATDYVTSPISHRAQLIYGCMIGLLTVIIRLWGSYPEGMSFAILI MNALTPLLNTYIKPRHFGHVVKSRKEAKR >gi|228307789|gb|ACLR01000160.1| GENE 21 20828 - 21970 1372 380 aa, chain + ## HITS:1 COG:YPO2241 KEGG:ns NR:ns ## COG: YPO2241 COG4659 # Protein_GI_number: 16122469 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfG # Organism: Yersinia pestis # 13 197 10 195 209 91 33.0 3e-18 MKKLPSTLPNMILSLGIICLIIAGILALVNVATKDTIAQAETKAKVEAIKEIVPAFDNNP YEERDTVTLEGEDPITVYPATQGGQPVGYAIETYTDKGFAGHIDIMVGFDMKSQIVGFKV LKHEETPGLGAKIQEWFTSPAPSADLIRDVRGLDMSQASPLKVSKDGGKVDAITAATISS RAFIDAIERAYRVYQSVIGEGAPVAQPAESNCELPEREVIDSLFNTLLPAYRLVDKEKNG AADDGTPWLTQNYGTNDMSKTAGLLVVTSSGDDYNGRRLPMLVCFDNSGALTAFAIADAE DTGKLISISKEFGGNQDPATTKPSKKSLIGKKVTPASLKLSKDGGSIDAVSGSTVSSRAI LQGIARAQRIFEANANESTK >gi|228307789|gb|ACLR01000160.1| GENE 22 21980 - 22570 869 196 aa, chain + ## HITS:1 COG:TM0247 KEGG:ns NR:ns ## COG: TM0247 COG4660 # Protein_GI_number: 15643019 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE # Organism: Thermotoga maritima # 5 196 4 193 200 187 55.0 1e-47 MNKYIKTITNGIITENPTFVLLLGMCPTLATTTSAINGLSMGLATTFVLICSNVMISLLK RLIPDAVRIPAFIVVIAGFVTVLQMVIKAYMPALDQSLGIFIPLIVVNCIVLGRAESTAS KSSVGISLFDGVGIGLGFTIGLTLLATVREMLGGGTFFGMRAYPGDFSALLFVLPPGAFI ALGLLIGIYHAVTKKR >gi|228307789|gb|ACLR01000160.1| GENE 23 22635 - 23216 909 193 aa, chain + ## HITS:1 COG:FN1592 KEGG:ns NR:ns ## COG: FN1592 COG4657 # Protein_GI_number: 19704913 # Func_class: C Energy production and conversion # Function: Predicted NADH:ubiquinone oxidoreductase, subunit RnfA # Organism: Fusobacterium nucleatum # 18 190 21 192 194 169 60.0 3e-42 MEFIIIFIVAVFVNNVVLSQFLGICPFLGVSKKVSTATGMGAAVTFVLLLATMVTWLVQT YILVPIGLEFLQTIAFILVIATLVQMIEMIIKKISPALYQALGVFLPLITTNCCVLGVAI LVIQKEFTYAESLVYAVSIGIGFLLAMVIFAGIREQLAKTGSTPRAMKGTPIALITAGIL AMAFMGFSGLAAI >gi|228307789|gb|ACLR01000160.1| GENE 24 23832 - 24038 179 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRSSTTLSRKLSNSSVEIDESPRRNKKNLPNFDLLLPKFHFILPNFYFPAPWGIFICSVK LPDLLRRD Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:35 2011 Seq name: gi|228307785|gb|ACLR01000161.1| Porphyromonas uenonis 60-3 deg1118640599513, whole genome shotgun sequence Length of sequence - 506 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 33 - 413 113 ## gi|228469955|ref|ZP_04054878.1| hypothetical protein PORUE0001_0510 + Term 455 - 504 19.0 Predicted protein(s) >gi|228307785|gb|ACLR01000161.1| GENE 1 33 - 413 113 126 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469955|ref|ZP_04054878.1| ## NR: gi|228469955|ref|ZP_04054878.1| hypothetical protein PORUE0001_0510 [Porphyromonas uenonis 60-3] # 1 126 68 192 192 228 96.0 1e-58 MGFGFFDAYNKVGKKKDSSFSGSLDLQPNLETTIHFKALPNSFNPKNLDALKLEVEFTLR AKEPFAIDPELDNQPNPLKPTTTVVSFTWQEKINGEVTRQESQTVKLYDPDNNAEYRSKE YKTGIK Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:42 2011 Seq name: gi|228307782|gb|ACLR01000162.1| Porphyromonas uenonis 60-3 deg1118640599491, whole genome shotgun sequence Length of sequence - 521 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 520 239 ## PG1435 integrase Predicted protein(s) >gi|228307782|gb|ACLR01000162.1| GENE 1 1 - 520 239 173 aa, chain - ## HITS:1 COG:no KEGG:PG1435 NR:ns ## KEGG: PG1435 # Name: not_defined # Def: integrase # Organism: P.gingivalis # Pathway: not_defined # 1 173 130 302 408 109 33.0 4e-23 TSATLRWHNYQMTLLQGYLGYQYGKDDLPLSAVQKDELSSYELYLKGEKNYTHNTAIKVL RFLRKAMERAVEDDLLMRVPFPKVVLRMQPTDRGFLDDSDLERLRSVELSNPKLLLVRDA FLFSCYTGLSYADISRLVRDNIISMHGQSWVVLRRKKTGVLSTIPLMSVAVHI Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:45 2011 Seq name: gi|228307778|gb|ACLR01000163.1| Porphyromonas uenonis 60-3 deg1118640599656, whole genome shotgun sequence Length of sequence - 909 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 257 322 ## COG3590 Predicted metalloendopeptidase 2 2 Tu 1 . - CDS 539 - 889 418 ## PGN_0271 endopeptidase PepO Predicted protein(s) >gi|228307778|gb|ACLR01000163.1| GENE 1 2 - 257 322 85 aa, chain - ## HITS:1 COG:XF0576 KEGG:ns NR:ns ## COG: XF0576 COG3590 # Protein_GI_number: 15837178 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Xylella fastidiosa 9a5c # 1 84 404 486 700 87 48.0 7e-18 MVSNLQSALKDRISQLKWMSDETKQKAIEKLSNFTVKIGYPDKWKDYSKLNISEDKSFVD NVRSAIQFEHDFNMSELGQPVDRSR >gi|228307778|gb|ACLR01000163.1| GENE 2 539 - 889 418 116 aa, chain - ## HITS:1 COG:no KEGG:PGN_0271 NR:ns ## KEGG: PGN_0271 # Name: not_defined # Def: endopeptidase PepO # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 110 180 291 689 84 40.0 1e-15 MNIFNLKQTSLALGNKEYYTDPKNGEIIKAYNQYIERIAQLAGYSAEEAQRIAKTILPSA LSSPRCATHRRSCVMLTRNFNKVQIKKFVADNPGFDWARYIKGRNLRRLESGTLVS Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:48 2011 Seq name: gi|228307774|gb|ACLR01000164.1| Porphyromonas uenonis 60-3 deg1118640599714, whole genome shotgun sequence Length of sequence - 533 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 96 - 461 397 ## gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein Predicted protein(s) >gi|228307774|gb|ACLR01000164.1| GENE 1 96 - 461 397 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:54 2011 Seq name: gi|228307772|gb|ACLR01000165.1| Porphyromonas uenonis 60-3 deg1118640599580, whole genome shotgun sequence Length of sequence - 602 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 176 - 235 3.8 1 1 Tu 1 . + CDS 356 - 602 99 ## PG1490 TraG family protein Predicted protein(s) >gi|228307772|gb|ACLR01000165.1| GENE 1 356 - 602 99 82 aa, chain + ## HITS:1 COG:no KEGG:PG1490 NR:ns ## KEGG: PG1490 # Name: not_defined # Def: TraG family protein # Organism: P.gingivalis # Pathway: not_defined # 1 82 397 478 669 164 96.0 1e-39 MISPALYWVMTGDDFSLDINNPNEPKVLVVGNNPDRQNIYSAALGLYNSRIVKLINKKHQ LKSSVIIDELPTIYFRGLDNLI Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:57 2011 Seq name: gi|228307770|gb|ACLR01000166.1| Porphyromonas uenonis 60-3 deg1118640599567, whole genome shotgun sequence Length of sequence - 532 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 212 336 ## BVU_1423 putative Na+-dependent phosphate transporter + Term 277 - 329 16.4 Predicted protein(s) >gi|228307770|gb|ACLR01000166.1| GENE 1 3 - 212 336 69 aa, chain + ## HITS:1 COG:no KEGG:BVU_1423 NR:ns ## KEGG: BVU_1423 # Name: not_defined # Def: putative Na+-dependent phosphate transporter # Organism: B.vulgatus # Pathway: not_defined # 6 67 495 556 563 65 45.0 7e-10 SSSEADARESYTLEKQLNDLRTLLKAQNMDNVRTQKYDYPESVSYMDLVGYYEQLGDYVL NVVQAATKG Prediction of potential genes in microbial genomes Time: Fri May 27 09:43:59 2011 Seq name: gi|228307767|gb|ACLR01000167.1| Porphyromonas uenonis 60-3 deg1118640599617, whole genome shotgun sequence Length of sequence - 547 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 40 - 207 122 ## gi|228470530|ref|ZP_04055390.1| putative Na+-dependent phosphate transporter + Term 232 - 284 16.4 Predicted protein(s) >gi|228307767|gb|ACLR01000167.1| GENE 1 40 - 207 122 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470530|ref|ZP_04055390.1| ## NR: gi|228470530|ref|ZP_04055390.1| putative Na+-dependent phosphate transporter [Porphyromonas uenonis 60-3] # 1 55 14 68 68 95 100.0 8e-19 MDNVRTQKYDYPESVSYMDLVGYYEQLGDYVLNVGPRPLPRDRRDVYSQTPLPSF Prediction of potential genes in microbial genomes Time: Fri May 27 09:44:07 2011 Seq name: gi|228307754|gb|ACLR01000168.1| Porphyromonas uenonis 60-3 ctg1118640599727, whole genome shotgun sequence Length of sequence - 13156 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 5, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 449 457 ## PGN_1736 putative glycogen synthase + Term 475 - 528 16.3 + Prom 530 - 589 3.5 2 2 Op 1 4/0.000 + CDS 825 - 1088 378 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit 3 2 Op 2 23/0.000 + CDS 1085 - 2689 2000 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 4 2 Op 3 . + CDS 2704 - 3747 1128 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit + Term 3798 - 3838 9.3 5 3 Op 1 . + CDS 4276 - 7092 3156 ## COG0495 Leucyl-tRNA synthetase 6 3 Op 2 . + CDS 7178 - 8155 1275 ## COG1284 Uncharacterized conserved protein 7 3 Op 3 . + CDS 8174 - 8560 346 ## Mflv_3594 hypothetical protein 8 3 Op 4 . + CDS 8578 - 9645 961 ## PG1773 PAP2 superfamily protein 9 4 Op 1 . + CDS 9746 - 11806 2854 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 10 4 Op 2 . + CDS 11813 - 12433 725 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 12487 - 12548 14.1 + Prom 12491 - 12550 3.8 11 5 Tu 1 . + CDS 12746 - 13111 397 ## gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein Predicted protein(s) >gi|228307754|gb|ACLR01000168.1| GENE 1 3 - 449 457 148 aa, chain + ## HITS:1 COG:no KEGG:PGN_1736 NR:ns ## KEGG: PGN_1736 # Name: not_defined # Def: putative glycogen synthase # Organism: P.gingivalis_ATCC33277 # Pathway: Starch and sucrose metabolism [PATH:pgn00500]; Metabolic pathways [PATH:pgn01100] # 1 146 123 267 271 137 49.0 9e-32 FIRGVLEAIKSLHWIPDVIHCLGWFSALAPVYLKTAYKNDPYFERAKVLFSVDGNEEEGE IGEDLIKKLEFDKITGDLLDPLQGEVTPDALRRMAIHYSDGVILGQESVSPELIEYLRSE PDHKVLEYPGPAVDHAEAYVDFYRSFTE >gi|228307754|gb|ACLR01000168.1| GENE 2 825 - 1088 378 87 aa, chain + ## HITS:1 COG:Rv2455c_1 KEGG:ns NR:ns ## COG: Rv2455c_1 COG1014 # Protein_GI_number: 15609592 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Mycobacterium tuberculosis H37Rv # 5 85 21 101 245 95 55.0 2e-20 MTDKPNKRIIEEVVVRFSGDSGDGMQLTGSIFSDMSAMYGNSVSTFPDYPAEIRAPQGTQ GGVSGFQVRIGHNQVHTPGDYADVLWR >gi|228307754|gb|ACLR01000168.1| GENE 3 1085 - 2689 2000 534 aa, chain + ## HITS:1 COG:MT2530_2 KEGG:ns NR:ns ## COG: MT2530_2 COG0674 # Protein_GI_number: 15841979 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 130 506 3 384 425 387 53.0 1e-107 MNAAALKVNVKNLRRDSIIIIDSDSCGEKDLKKALYETDDPIKELGLNPDRVLACPISTM VQEVLKDVDMDARGRLRCKNMFALGVVSWLFDRPLEQAEHFISKKFAKKEIIRQANIAAL HGGYSYAANTHASVGTPFVIEGAPQDSGIYLDVTGNKATAFGLIAGAERAGLKLFLGSYP ITPATDILHFLAKYKSLDVITVQAEDEIAGICTAIGASYAGRLGVTSTSGPGVALKSEAI NLAVIAELPLVVVDVQRGGPSTGMPTKSEQTDLLQAMFGRNGESPLVVIAPTSPSKCFDA AYEAVKLAVEHMTPVILLSDAYLGNGSVAWRLPDYEQYPAIKPHYVDQYKGEEPWMPYMR DPETLVRYWSVPGPGALPYRTGGLEKDNKTGAISTDGANHDLMVHKRYDKIQHIAEVIPP LTVEGDVEDADLLIVGWGSTYGHLSDACQLLRKKGHKVAHTQFTIINPMPKNTEEIMRRY PRVVVAEQNLGQMAMLLRTKVEGVKFHQYNEVQGQPLKVERLVAAFEEILNEQL >gi|228307754|gb|ACLR01000168.1| GENE 4 2704 - 3747 1128 347 aa, chain + ## HITS:1 COG:Rv2454c KEGG:ns NR:ns ## COG: Rv2454c COG1013 # Protein_GI_number: 15609591 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Mycobacterium tuberculosis H37Rv # 4 346 37 372 373 304 43.0 2e-82 MTETTSNLEKGALRYAPKDFKNASPVKWCPGCGDHGVLAAIHKAMAELGISPEETIVVSG IGCSSRLPYYMNTFGFHTVHGRGAAVASGVKVARPDLTVWLMSGDGDSLAIGGNHFIHAV RRNVDINEVLFNNRIYGLTKGQYSPTSPRGLVTKSSPYGTVEDPFEPAELVMGARGNFFA RSLDVDQPTLTACLLAGAKHKGFAVTEVLVNCMIFNNGAHASISDRAVRADKTIVLRHGE KMTFGENNERGLVLDGFKLRAVTIGEDGYTLDDVLTHDAHEPNPFLHMMLAAMNGADGLP VAMGIIRDVEGVTYDWAVHDQIAQQQGKNKVRTLRELLMTEDTWEIK >gi|228307754|gb|ACLR01000168.1| GENE 5 4276 - 7092 3156 938 aa, chain + ## HITS:1 COG:SP0254 KEGG:ns NR:ns ## COG: SP0254 COG0495 # Protein_GI_number: 15900189 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 3 938 4 832 833 727 43.0 0 MDYNHHDIEQSAQRIWHDADIYRVEIDRDKPSYYVLDMFPYPSGAGLHVGHPLGYIASDI YARYKRLQGYNVLHPMGYDAFGLPAEQYAIQTNRHPEETTRVNIARYREQLDNIGFGFDW SRQVVTCDPEYYKWTQWAFIQLFHHYYDTATERAEPIDKLIQYLEVHGTEGCTAYASTPL ELTAEAWRDASEAERSEWLMHYRLAFLGESVVNWCPELGTVLANDEVSDGVSERGGYPVV QRKMKQWSLRVSAYAERLLAGLDRLDWSDALKEMQRNWIGKSVGASVTFKASTAHGTLPI EVFTTRPDTLYGVTFMVLAPESSLVADLTTEEQRDAVETYLDRTKRRTERERQADHSVTG VFTGSYAQHPLTEALIPIWISDYVLAGYGTGAIMAVPAHDSRDFAFARHFDLLIRQVVLP KGGEESDPSTWSESIDSKEGELINSPLLNGKPVSDAIDWMCHYLDEQGLGQKRINYRLRD AIFSRQRYWGEPIPIYYKEGVPHTLPLDKLPLTLPEVDKYLPTESGEPPLGRAKHWCTEE GYPYELCTMPGFAGSSAYYLRYMDPHNHDALVSPDANNYWRQVDLYIGGTEHATGHLIYS RFWNKFLYDLGIVCEDEPFKRLVNQGMIQGRSNYVYRIKGTNQFVTYSQREQYDVTQMHV DIHLVHNDVLDQEAFRQWRDDLHDATFITEADGSYLCGYGVEKMSKSMFNVVNPDEIIEQ YGADTLRMYEMFLGPLEQSKPWDTNGIDGVYRFLKRVWSLYHDSEGQLTVSADAEASREE LRTIHKLIQKITQDIERLSFNTSVSAFMIAVGELQKAGTTSLEVLRPLAILLSPFAPHIA EMLWQEMRTACCSDTLSAESIVMAAWPQCDESLIAEDSVRYPVSFNGKVRFNLELPAGLS KEQIEEQVLAHPDTVKWIDGKPLKKVIVVPGRIVNIVL >gi|228307754|gb|ACLR01000168.1| GENE 6 7178 - 8155 1275 325 aa, chain + ## HITS:1 COG:CAC0848 KEGG:ns NR:ns ## COG: CAC0848 COG1284 # Protein_GI_number: 15894135 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 18 322 16 286 292 139 29.0 9e-33 MSQALGAPTSKRAQVWYFVHDFLFIVLGVCLYVIGWAGFVLSQEIATGGLAGVTTIIQIA TNIPAFIPYNIINVGLLIVSIIFLGWRYSIKTLIGVILMGIAIPIGQALFGDPNTEVYHN LNHWLTDNIPNVGPLLREERFMAVIIGGILCGSGLFLVFHVNGSTGGTDVIVSLFNKYTT LSLGRAMILIDATIVTASYFVNVYISGKDPQLGAELLTFSIVEVVFCSMTLDYWTNSNKH STQLFIFSKKYKEINEAITQRLHRGCTLIHADGGYSQEEMRILMVVTRKAQLQSINRIIK EIDPDAFVSEGTVHGVYGRGFDNLK >gi|228307754|gb|ACLR01000168.1| GENE 7 8174 - 8560 346 128 aa, chain + ## HITS:1 COG:no KEGG:Mflv_3594 NR:ns ## KEGG: Mflv_3594 # Name: not_defined # Def: hypothetical protein # Organism: M.gilvum # Pathway: not_defined # 36 127 42 124 136 69 43.0 4e-11 MLATSRHNKALLALLACLLVGGLVLYLYRPEALPIPRCPFLQLTGWQCPGCGSLRGIHAL LHGDLGRVLQLNVMLLPALVYFTLLVILELLRPYRPQAERLYRRLAGRTACWIIFAIIVV WGIVRNLL >gi|228307754|gb|ACLR01000168.1| GENE 8 8578 - 9645 961 355 aa, chain + ## HITS:1 COG:no KEGG:PG1773 NR:ns ## KEGG: PG1773 # Name: not_defined # Def: PAP2 superfamily protein # Organism: P.gingivalis # Pathway: not_defined # 53 211 75 232 445 128 44.0 4e-28 MRLLALLTLGLLLSCSGALAQSSSSDTLAPSPDPLVALLPGALYAAYPLHHSDVAIRTTR HNLLGSQWRNHYDDHMQFASYGLQLAMRCGGATGRSRSWGEMLTADGIGALGTAAIVLSV KSGVQRMRPDGSTRNSFPSGHTATAFLGAELFNLEYGADYPLLAHMQYLFATSVAFGRMA NNRHWYSDVLWGGLIGVTMARVGYLASDLIFGRYTPAVSSQSPDQYFYVSLLYSRNLFGG AGCLGTQLGWQTPSLNYAAELSLRPDKERPTLHGDLIVGAPLYQWRYLSLRQSYGIGIGY DKATSERTYAHLQAGLEALPRLRYLDKLGLFLRLHCEPYRQSYLTLGLSLRHPCW >gi|228307754|gb|ACLR01000168.1| GENE 9 9746 - 11806 2854 686 aa, chain + ## HITS:1 COG:CC1986 KEGG:ns NR:ns ## COG: CC1986 COG1506 # Protein_GI_number: 16126229 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Caulobacter vibrioides # 21 683 10 675 683 326 30.0 8e-89 MTRRNLFRSLVALIFSTLALPMTAQQGTKQMTPEMLLTMPRVGSYALAPNGKQVVYNVSQ PSIKDNNSRTSIYLINSDGTGRTELTAPSAGSEYTPRWSRDGKQIYFMRGTDQGMQLFAR TLSDGAERQLTAIDGGIVDYRFSPDEKTLLYVQDIKARPVVTDVYPDLDKADARIIEDLM YKHWDEWVSTMPHPFIAKVAAQPITKGLDLLEGEPYEAPMRPHNGIEDIAFSPDGNLIAY ACRKKTGLEYSLSTNSDIYLYNVSTGETTNVSEGIMGYDTNPVFSPDGRSLIWVGMERDG YESDLQVLYLYDLAKKQYRPLTADFEYNIANPTWSADSKTIYFTTCREALTHIYSYQLAN GKIKQITDGQYNYTGFDLNDKGVCVASRQAMTYPTELFMVNLKNGKATALTAEDKPIMSQ LGNLTCEKRWMPTTDGGKMLTWVLYPPHFDKNKQYPSILYCQGGPQSTISQFWSYRWNPR LMAEQGYIVILPNRHGVPGFGKAWNEQISGDYSGQNIRDYLTAADLMRKEPFIDPHRMGA VGASYGGYSVYYLAGVHEGRFAAFIAHAGIFNLEAQYLETEEKWFANWDMGGAPWDKDNA TAQRTFANSPHKLVDKWDTPILIIHGEHDYRILASQGMMAFDAAKMRGIPTKMLLFPEET HWVLKPQNALLWQRTFFDWLDRWLKK >gi|228307754|gb|ACLR01000168.1| GENE 10 11813 - 12433 725 206 aa, chain + ## HITS:1 COG:L111950 KEGG:ns NR:ns ## COG: L111950 COG1011 # Protein_GI_number: 15672092 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Lactococcus lactis # 2 188 3 188 207 118 34.0 7e-27 MIDTLVFDFGGVLVDLQPEVSLRRFRELGVQDIDEMLNPYRQLGVFHDLEMGLVGREGFV ARLNEHAGTALTDEEINEAIMLFLKEVPQYKFDYLEQLRKQYKIYILSNTNPYIMAYAHS PHFLPATGRTLSDYVDKVYASCDMHTMKPDRAIYEQMIADSGMVPERTLFIDDSTANLEA ASALGLQTLLAVNGMDWRPALVARLQ >gi|228307754|gb|ACLR01000168.1| GENE 11 12746 - 13111 397 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 09:44:24 2011 Seq name: gi|228307751|gb|ACLR01000169.1| Porphyromonas uenonis 60-3 deg1118640599726, whole genome shotgun sequence Length of sequence - 531 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 485 501 ## COG0297 Glycogen synthase Predicted protein(s) >gi|228307751|gb|ACLR01000169.1| GENE 1 3 - 485 501 160 aa, chain + ## HITS:1 COG:TM0895 KEGG:ns NR:ns ## COG: TM0895 COG0297 # Protein_GI_number: 15643657 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Thermotoga maritima # 2 64 106 168 486 60 41.0 1e-09 GAPSDNADRSIFFIRGVLEAIKSLHWIPDVIHCLGWFSALAPVYLKTAYKNDPYFERAKV LFSVDGNEEEGEIGEDLIKKLEFDKITGDLLDPLQGEVTPDALRRMAIHYSDGVILGQES VSPELIEYLRSEPDHKVLEYPGPAVDHAEAYVDFYRSFTE Prediction of potential genes in microbial genomes Time: Fri May 27 09:44:49 2011 Seq name: gi|228307672|gb|ACLR01000170.1| Porphyromonas uenonis 60-3 ctg1118640599676, whole genome shotgun sequence Length of sequence - 92554 bp Number of predicted genes - 84, with homology - 78 Number of transcription units - 32, operones - 20 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 197 220 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 224 - 283 1.9 - Term 446 - 480 4.3 2 2 Op 1 9/0.000 - CDS 591 - 1934 1835 ## COG1668 ABC-type Na+ efflux pump, permease component 3 2 Op 2 . - CDS 1949 - 2899 1239 ## COG4152 ABC-type uncharacterized transport system, ATPase component 4 2 Op 3 . - CDS 2934 - 3410 428 ## FP1054 hypothetical protein - Prom 3440 - 3499 3.3 5 3 Op 1 . + CDS 3465 - 4241 869 ## COG0775 Nucleoside phosphorylase 6 3 Op 2 . + CDS 4260 - 5309 1216 ## COG1466 DNA polymerase III, delta subunit + Term 5508 - 5550 -0.5 7 4 Tu 1 . - CDS 5306 - 5605 227 ## - Term 5619 - 5655 2.4 8 5 Op 1 . - CDS 5730 - 7670 1805 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 9 5 Op 2 . - CDS 7667 - 8062 389 ## PGN_1554 hypothetical protein 10 5 Op 3 . - CDS 7879 - 10005 2108 ## PGN_1553 hypothetical protein - Term 10023 - 10064 -0.3 11 5 Op 4 . - CDS 10072 - 11490 1609 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 12 5 Op 5 . - CDS 11516 - 13720 2102 ## COG0514 Superfamily II DNA helicase 13 6 Op 1 24/0.000 - CDS 13821 - 15140 320 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 14 6 Op 2 . - CDS 15124 - 15840 1058 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Term 16385 - 16414 2.1 15 7 Tu 1 . - CDS 16544 - 17236 414 ## COG4886 Leucine-rich repeat (LRR) protein - Prom 17320 - 17379 3.1 + Prom 17609 - 17668 6.4 16 8 Tu 1 . + CDS 17911 - 18084 87 ## gi|228470616|ref|ZP_04055473.1| hypothetical protein PORUE0001_0819 + Term 18152 - 18188 -0.5 17 9 Op 1 . - CDS 18102 - 20195 2110 ## COG1200 RecG-like helicase 18 9 Op 2 . - CDS 20225 - 20977 593 ## COG1211 4-diphosphocytidyl-2-methyl-D-erithritol synthase 19 9 Op 3 . - CDS 21005 - 22315 1440 ## COG1160 Predicted GTPases 20 9 Op 4 . - CDS 22392 - 23312 952 ## COG1159 GTPase 21 9 Op 5 . - CDS 23284 - 24306 1170 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III - Prom 24408 - 24467 6.7 + Prom 24147 - 24206 2.5 22 10 Tu 1 . + CDS 24388 - 24681 226 ## 23 11 Op 1 . + CDS 24784 - 26220 2024 ## COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH 24 11 Op 2 . + CDS 26255 - 26746 559 ## COG0780 Enzyme related to GTP cyclohydrolase I 25 11 Op 3 . + CDS 26759 - 27655 1135 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 27701 - 27742 6.4 - Term 27685 - 27733 11.2 26 12 Op 1 . - CDS 27783 - 28550 894 ## gi|228470583|ref|ZP_04055440.1| hypothetical protein PORUE0001_0828 27 12 Op 2 . - CDS 28769 - 29179 173 ## gi|228470594|ref|ZP_04055451.1| hypothetical protein PORUE0001_0829 28 12 Op 3 . - CDS 29158 - 29439 331 ## gi|228470564|ref|ZP_04055421.1| hypothetical protein PORUE0001_0830 - Prom 29531 - 29590 2.7 - Term 29739 - 29792 9.4 29 13 Op 1 . - CDS 29817 - 31049 1297 ## COG2195 Di- and tripeptidases 30 13 Op 2 . - CDS 31065 - 32327 1346 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 31 13 Op 3 . - CDS 32339 - 34147 1651 ## gi|228470574|ref|ZP_04055431.1| hypothetical protein PORUE0001_0833 32 13 Op 4 . - CDS 34191 - 37202 3474 ## PGN_0464 hypothetical protein - Prom 37287 - 37346 4.3 + Prom 37244 - 37303 2.6 33 14 Tu 1 . + CDS 37336 - 37593 201 ## + Prom 37625 - 37684 4.1 34 15 Op 1 . + CDS 37825 - 38052 209 ## PGN_1752 putative ferredoxin 4Fe-4S 35 15 Op 2 23/0.000 + CDS 38067 - 39146 1556 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 36 15 Op 3 22/0.000 + CDS 39189 - 39992 1119 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 37 15 Op 4 . + CDS 40012 - 40557 701 ## COG1014 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit + Term 40597 - 40647 11.2 + Prom 40601 - 40660 3.0 38 16 Op 1 . + CDS 40726 - 43179 2374 ## COG0550 Topoisomerase IA 39 16 Op 2 . + CDS 43202 - 43990 885 ## COG0101 Pseudouridylate synthase - Term 44328 - 44389 11.1 40 17 Op 1 . - CDS 44520 - 44987 505 ## COG0590 Cytosine/adenosine deaminases 41 17 Op 2 . - CDS 44991 - 46100 996 ## COG0526 Thiol-disulfide isomerase and thioredoxins 42 17 Op 3 . - CDS 46119 - 46838 889 ## COG0846 NAD-dependent protein deacetylases, SIR2 family 43 17 Op 4 . - CDS 46880 - 47494 688 ## COG0164 Ribonuclease HII 44 17 Op 5 . - CDS 47503 - 48729 1265 ## COG0520 Selenocysteine lyase 45 17 Op 6 . - CDS 48752 - 49633 1032 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 46 17 Op 7 . - CDS 49667 - 51043 1342 ## COG0527 Aspartokinases 47 17 Op 8 . - CDS 51040 - 51789 296 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 48 17 Op 9 . - CDS 51816 - 52343 431 ## COG2249 Putative NADPH-quinone reductase (modulator of drug activity B) 49 17 Op 10 . - CDS 52350 - 53039 943 ## PG2106 hypothetical protein + Prom 53327 - 53386 2.4 50 18 Op 1 . + CDS 53428 - 53691 292 ## 51 18 Op 2 . + CDS 53721 - 54779 1410 ## PGN_0416 putative type II DNA modification methyltransferase 52 18 Op 3 . + CDS 54776 - 58705 2534 ## COG0827 Adenine-specific DNA methylase 53 18 Op 4 . + CDS 58730 - 60139 493 ## COG4928 Predicted P-loop ATPase 54 19 Op 1 . - CDS 60361 - 61104 542 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 55 19 Op 2 5/0.000 - CDS 61095 - 62201 1423 ## COG1060 Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes 56 19 Op 3 3/0.000 - CDS 62201 - 62983 734 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 57 19 Op 4 8/0.000 - CDS 63009 - 65030 1723 ## COG0352 Thiamine monophosphate synthase 58 19 Op 5 . - CDS 65052 - 66824 2350 ## COG0422 Thiamine biosynthesis protein ThiC 59 19 Op 6 . - CDS 66866 - 67066 243 ## gi|228470571|ref|ZP_04055428.1| thiamine biosynthesis protein ThiS - Term 67563 - 67626 7.0 60 20 Tu 1 . - CDS 67703 - 70540 3972 ## COG0612 Predicted Zn-dependent peptidases 61 21 Op 1 . - CDS 70848 - 71099 115 ## 62 21 Op 2 . - CDS 71143 - 71754 825 ## ZPR_4443 hypothetical protein - Prom 71890 - 71949 4.4 + Prom 71717 - 71776 3.9 63 22 Tu 1 . + CDS 71918 - 72541 700 ## PG0345 hypothetical protein + Term 72667 - 72709 4.2 - Term 72362 - 72394 -0.4 64 23 Op 1 . - CDS 72538 - 73185 723 ## COG4122 Predicted O-methyltransferase 65 23 Op 2 . - CDS 73206 - 73685 605 ## COG0757 3-dehydroquinate dehydratase II + Prom 73641 - 73700 2.6 66 24 Tu 1 . + CDS 73755 - 74684 1083 ## COG4974 Site-specific recombinase XerD + Term 74704 - 74754 6.7 - Term 74691 - 74742 14.1 67 25 Op 1 . - CDS 74769 - 75323 675 ## gi|228470621|ref|ZP_04055478.1| conserved hypothetical protein 68 25 Op 2 . - CDS 75351 - 77153 2112 ## COG1217 Predicted membrane GTPase involved in stress response - Prom 77383 - 77442 3.8 - Term 77387 - 77428 10.4 69 26 Op 1 . - CDS 77452 - 77958 582 ## COG0054 Riboflavin synthase beta-chain - Prom 77997 - 78056 2.1 70 26 Op 2 . - CDS 78132 - 78821 1249 ## PG1430 TPR domain-containing protein - Prom 78841 - 78900 2.8 71 27 Op 1 5/0.000 - CDS 78933 - 79808 1202 ## COG0388 Predicted amidohydrolase 72 27 Op 2 . - CDS 79805 - 80854 939 ## COG2957 Peptidylarginine deiminase and related enzymes 73 27 Op 3 . - CDS 80891 - 81922 935 ## gi|228470573|ref|ZP_04055430.1| hypothetical protein PORUE0001_0872 74 27 Op 4 . - CDS 81935 - 84355 2742 ## BT_2172 hypothetical protein - Prom 84378 - 84437 3.2 + Prom 84342 - 84401 2.6 75 28 Tu 1 . + CDS 84627 - 84836 143 ## 76 29 Tu 1 . + CDS 84968 - 85504 499 ## gi|228470565|ref|ZP_04055422.1| conserved hypothetical protein + Term 85538 - 85568 -0.9 77 30 Tu 1 . + CDS 85940 - 86179 272 ## TDE1526 hypothetical protein + Term 86191 - 86243 16.7 + Prom 86182 - 86241 1.6 78 31 Op 1 . + CDS 86266 - 87099 793 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component + Term 87120 - 87155 -0.9 79 31 Op 2 . + CDS 87177 - 88142 1024 ## BT_2509 putative transcriptional regulator 80 31 Op 3 . + CDS 88142 - 88711 509 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 88803 - 88857 20.6 - Term 88790 - 88845 13.2 81 32 Op 1 . - CDS 88881 - 89792 994 ## gi|228470606|ref|ZP_04055463.1| conserved hypothetical protein - Prom 89832 - 89891 2.1 - Term 89877 - 89923 0.0 82 32 Op 2 . - CDS 89959 - 91512 372 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 83 32 Op 3 . - CDS 91509 - 91760 191 ## gi|228470618|ref|ZP_04055475.1| hypothetical protein PORUE0001_0880 84 32 Op 4 . - CDS 91783 - 92364 935 ## COG0450 Peroxiredoxin - Prom 92450 - 92509 4.6 Predicted protein(s) >gi|228307672|gb|ACLR01000170.1| GENE 1 2 - 197 220 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 65 1 65 84 129 100.0 7e-29 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTML >gi|228307672|gb|ACLR01000170.1| GENE 2 591 - 1934 1835 447 aa, chain - ## HITS:1 COG:BH1167 KEGG:ns NR:ns ## COG: BH1167 COG1668 # Protein_GI_number: 15613730 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: ABC-type Na+ efflux pump, permease component # Organism: Bacillus halodurans # 12 441 7 414 425 118 27.0 2e-26 MNKKSPSKLSILIEREYMVRVKKKSFIVTTLLVPILIAAIFFIVIYVSMSSLSDERVAVI DETGLYSDVLADNEYYTFIPSSEPLKAYTDKAKLEEEGITAVLYIKDTLMNNPNGWSLYS YKKLPDGIVRYINDAFTERLKEQRIAQYDIEGLPEIINDVETTISVPTYQWDSKGEEAKS SGSLAGVIGMVLSGIILAFMSNYSGQVMSGVLEEKKNRIMEVIVSTVRPIEMMIAKMVGV FLVGLTQVAIWLIFGGIIFVVGSLVAVGGVYDLSALSQLDPAQMGGLAGGMSMDSVTEMQ SSLEVLQSINFVQLIIMLLVYFIGGYLLYASLFAAIGSSVSSDEDASQFMMPFVLVMMLG FYIAMGSMDNPDGTMAFWGSIIPFSSPFVMMVRLPYGVATWELILSIGLLYLTAFGIAWL AARIYRVGILFTGKKPSLRDLWSWLRI >gi|228307672|gb|ACLR01000170.1| GENE 3 1949 - 2899 1239 316 aa, chain - ## HITS:1 COG:BS_yhaQ KEGG:ns NR:ns ## COG: BS_yhaQ COG4152 # Protein_GI_number: 16078053 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Bacillus subtilis # 4 222 1 219 298 222 46.0 9e-58 MPYLLEAEHIVKRYKNHLALDDVSIQVQPNSVFGLLGPNGAGKSTLIKIINKILLADSGT VLLNGKEMTYEDIRHIGYLPEERGLYKKMKVGDQAIYLARLHGLSRQEAQQELKHWFEKF DIMPWWRRKVEELSKGMQQKVQFICTVIHRPKLLIFDEPFSGFDPVNAELLKREILELRD NGCAVIFSTHNMQSVEEICDDIALINQSKVVLRGNVTEVKRSHFEGIASLLIAGEGYRPN WVESLTEQQIELLEIKREGHDMRVRLKDPQQRDVRALAELVPTDLHLLEVAQEIPSMQDI FIRTTTAQAQPATTTL >gi|228307672|gb|ACLR01000170.1| GENE 4 2934 - 3410 428 158 aa, chain - ## HITS:1 COG:no KEGG:FP1054 NR:ns ## KEGG: FP1054 # Name: not_defined # Def: hypothetical protein # Organism: F.psychrophilum # Pathway: not_defined # 1 146 1 146 148 122 38.0 3e-27 MKPLHLPSYPALIEEQSGRSVIYDVYRQSMVALTPEEWVRQHFLHYLSDHLGYPRLSIQV ESLVASSIRQDRFDAMIYGPGGQVLALIECKAPEVPLSQETINQISRYNAHYHAPLLMMT NGLFHLVLQIDYATATAKPLAEIPSYQRALDILQTSKV >gi|228307672|gb|ACLR01000170.1| GENE 5 3465 - 4241 869 258 aa, chain + ## HITS:1 COG:CPn0894 KEGG:ns NR:ns ## COG: CPn0894 COG0775 # Protein_GI_number: 15618803 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Chlamydophila pneumoniae CWL029 # 3 244 6 249 293 196 40.0 4e-50 MKTKKEIATNWLTRYTTRSLEAFAPHILLTNFTSYLQAFAKKIGEPILGESASMPNCGNA DMTMIHIGMGSPNAATIMDLLSAIEPRAVVFLGKCGGLKSQLTLGDYVLPIAAIRGEGTS DDYMPREVPSLPSFNVLKACSNALLEAGITYAPGTVYTTNRRLWEHDEHFKEYLRTTHAD AIDMETATLFTVGYANRIPTGALLMVSDMPMTPEGVKSDESDSYVTAHFAEQHLQLGIRT VESLLQSPEEMKSIVFDW >gi|228307672|gb|ACLR01000170.1| GENE 6 4260 - 5309 1216 349 aa, chain + ## HITS:1 COG:BH1337 KEGG:ns NR:ns ## COG: BH1337 COG1466 # Protein_GI_number: 15613900 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus halodurans # 5 241 4 236 342 66 24.0 9e-11 MTELVQISDQIRSGQPLPPLVLGYGEESYYINRLEELVVENYIPKEERTTQLVVYFGSET TAPEVLQQAQTFSMFAPKRLIVLRDAQDLKKSSVLKKPYGIAELIRDATTFAEGTTLLIL YHDALPAAAKKNAQALKSQVALIESAPVRRDNELREAMIQMAKGLDLELAPQAISTLIER VGYDLETLYSELQKLSIPAKGAGGLVSRAMVQQVVSKSRKYGPYDLLNAVQRRRDDEALQ IALAMAEDEKRYPVPQIIASLYGFFANLMVAHYLPSNSQKNIQEALNLKYESMARMYQSA MRLYSKQQTLNIISAIRRADGDAKGAHGVNASARTIYLDLLTQIFALKY >gi|228307672|gb|ACLR01000170.1| GENE 7 5306 - 5605 227 99 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAPRHFNALQGPRHHTPEEIENASIENANPPRSNKKILRNFDFFLPKFHFILPNFYFPAP WRISVCSLEISDFLGRNRNQRKGRRCLLEGYFQRAGAFV >gi|228307672|gb|ACLR01000170.1| GENE 8 5730 - 7670 1805 646 aa, chain - ## HITS:1 COG:MA0522 KEGG:ns NR:ns ## COG: MA0522 COG0323 # Protein_GI_number: 20089411 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Methanosarcina acetivorans str.C2A # 5 646 8 652 656 258 29.0 2e-68 MSEIIHLLPDSIANQIAAGEVIQRPASMLKELVENAIDAHATQIAIELQDAGKELMRVID DGVGMSPLDARMAFERHATSKISSVDDLFTLRSMGFRGEALASIVAVAQIELITRQADSD IGYKLLINGSEVISSAPTVAEIGTSITVKNLFYNVPARRRFLKGSETELRHIYRQFERIA LVYPEIAFTLYSEGKLIRNLPKSDLQHRIVDLLGKSYSKQLIPIEYQGPLANVSGFITLP RDAKRRGAQQFFFVNGRYMKHPYFHRAVMNVFEDLVAPGSQPNYFIYFQVDPSRIDVNIH PTKTEIKFLDEQAIFKLLMVVLREHLSTTSAMPAITFSTDQLIEIPAYDATRQSSTALQP PPVQIDPEYNPFKAISTDDQKPLDPLSSMSSGSPAHWESFIDDFQQRRGESTLPESQPTE AAPTAMDPLFTVSASPSQPVPHSSNLVYTFQERYLFTTMSDRLAVIQIERALLRIYYEQQ IATLTLEPDQAQPLLFAEELSLPSDLYPTHHELVESLQQIGFEITPQAEASADPDENVYL ITSVPKPLRPIGVADLITKTLGEYLDQVDKDDTDTTLPPAEILAQLFLSGEALRQAIELV RHTLHARAAQPSQIISDLFLTPNSQFDPLGRSIMVSLTSDEIDKWF >gi|228307672|gb|ACLR01000170.1| GENE 9 7667 - 8062 389 131 aa, chain - ## HITS:1 COG:no KEGG:PGN_1554 NR:ns ## KEGG: PGN_1554 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 121 3 110 114 69 32.0 4e-11 MGLIFRPRKPRTFHHQPIYWDPKKEQLQRRIEQIRRELEAAEGSDTAGSSDDTSKEDGKQ VESAYGSGEEFRDTLSESLYGGTRHLKKQRDRGIDNYARSGIILRCILMLILLGFVIWVL YYRQGPLFSFL >gi|228307672|gb|ACLR01000170.1| GENE 10 7879 - 10005 2108 708 aa, chain - ## HITS:1 COG:no KEGG:PGN_1553 NR:ns ## KEGG: PGN_1553 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 52 622 35 600 626 360 36.0 1e-97 MSHQPNEASTTRRLLLTLSGLLAVALLLFVGLPLWGGTAWLHSSPHTVEAPAPPPTMVSG KRLIILDHADILSHDQAILPDVVILSGNVRLRHGSWIMTCDSANLNEVTNSFDAFGHVRI QEGDSISITAGEMTYDGMTTLAELHDNVILTKNVTTLFTERLFYNRSQKVAYYDNFGTLA DSINTLTSVYGEYNTGSDEALFQNQVHLENDRFTLDTDILHYNTKTSICRIVSPTIIETT DSVTIETDRGFYNTDTEQSILLDHSLVTHPDGTMTGDSILYDKKREICQAYYDVVIDNQK DKATYFGDYGYLDQDNGYTYATGRAYVMDYSEEDTLYMSAEIMEGIKRNLPPPPGATDSL EVKYTKGYHNVRLYRKDIQAIGDSVHYFSLDSLIKLFGSPILWNDSTQLKGDTIYAHLAN DTIDHAFAWLNASSVRWLDSVKQDRVKADTIQAYFREGTLDHAFYRSNVESRYYLIQEKA KHYYALAQVKNPQMDVYITDDKLDHILWHGKAEGTIHPIQDLTDELRQMSGAEWHGDKRP LSPEDVIPDRTAPPASTDSLATLQGQNSKMSKGFDGLAAWQAFYKEYKQAIEKPKPAKAK NTASPDTTAIAVEPLPVYIRRPLESDTSSVLSLADSLQSYMHLLPLYSWDSYLDRENRAP STTNPSTGILRRSNSSDASSRSDESSKLPKAPTQQEVATTPAKKTASK >gi|228307672|gb|ACLR01000170.1| GENE 11 10072 - 11490 1609 472 aa, chain - ## HITS:1 COG:STM0092 KEGG:ns NR:ns ## COG: STM0092 COG0760 # Protein_GI_number: 16763482 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Salmonella typhimurium LT2 # 82 336 70 324 428 62 23.0 2e-09 MSIYRSSTSHVRWMIPFILLSLLASFSLTAQTPQHKASRGSIVDEVIWTVGDEPILKSEI ENQKLYMRSQGMHLEGNPDCYLTEQLAVQMLFLNQAKIDSISVDNTKVDRFVDNFMESLV QQVGSRERLEEYFNRPYSSIREQQRTMAVNNEIVRQMQQKIIQGVTVTPSEIRSYYAQIP QDSLPYIPDAVEVQVLRITPEIELAAIDKIKEQLRGYSEDIRAGQRDFSTIARLYSQDSR TSVRGGEYGFVARSSLEPEFAQVVFALSDTKQVSPIIRTATGYHIVQLIEKRDNTINFRH ILLKPSIAPDKLQQAVSKADSVAVVVRNGKTTFDDAVVLCSNVEETKNNYGLLLNENQES DRYGTALFTMSELQQDYASQVDKMQVGDVSPAFVSQDANGNTQVVLLKLKQRISGHRADM ATDFQLIKQLALQDKKQKEIDKWIVQHQKSTYIRISPDFQQCNFRYPGWIKK >gi|228307672|gb|ACLR01000170.1| GENE 12 11516 - 13720 2102 734 aa, chain - ## HITS:1 COG:alr0205 KEGG:ns NR:ns ## COG: alr0205 COG0514 # Protein_GI_number: 17227701 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Nostoc sp. PCC 7120 # 4 686 6 672 718 452 39.0 1e-126 MTHNLTELLSKIFGFEEFKGNQKEIIQSLLEGHDTFVLMPTGSGKSLCYQLPALIMEGTA IIVSPLIALMKNQVDALRETTGSNDIAHVLNSSLNKAQLDQVYQDVSAGATKLLYVAPES LGKAENIEFFRKIKISFFAIDEAHCISEWGHDFRPEYRKIRPVVDEIGRRPIIALTATAT PKVEHDIRKNLGILDGNIFKSSFNRPNLYYSVEPKGEDVNARIIRFIRKRPNKSGIIYCM SREKVMNLSKLLQMNGIKALPYHAGLDAKERSANQDAFLSEECRVIVATIAFGMGIDKPD VRYVIHYDMPKSLEGYYQETGRAGRDGGEGYCLAFYNEKDIQKLENFMQGKPIAEQEIGR QLLAKTSTFALTPMCRRAYLLYYFGERYDQENCGACDNCAKNRQTMEAKELLKQLLQTVL ELKEQFKKDHVIDVILGCDTAPIEDFHHDKLKSYGIGEDYSREIWELVVERALVLQYLTE STETYGILSVTPSGKKFIKKPTSFKIVAPDAEDLDDDDDDLDDDDEVDSAASSGRGRTAS TDPALYSILRDIRKKLSTKLGLGTAGIFPDSALEEMSTLYPITLQELKNISGINVEQADK YGEEFVRIIRNYVEEYEIERPEDYKIRTLPNNTKQHISIVQQLDRQIILEDIAISHSIST DDLLTELERIVKSGTKVKLNYLITSELGEDSYDELKEYLEDHPGCTLDDLISEYEDFYNE AELRLAMIIYSCNQ >gi|228307672|gb|ACLR01000170.1| GENE 13 13821 - 15140 320 439 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 201 429 270 452 466 127 35 2e-28 MAKKSNSIERRCSFCNRPESEVPILIGAEGSAQICSDCAEQIYTLLYQNGLVSAPVLDAT QQEKQKVKNASFAPLTYESLPKPQEIDAYLDRYVIGQSDAKKYLSVAVYNHYKRILASQE KDGKSDESSKLDDVEIAKSNILMVGPTGCGKTLLAQSIARMLQVPFAMVDATVLTQAGYV GEDIESIISRLLQNCDYDVAAAERGIVFIDEIDKIARKGDNPSITRDVSGEGVQQGLLKL LEGSVINVPPYGGRKHPEQKFIQVNTQQILFICAGAFDGIERIIGSRLNTRVVGYKEQQM DYQTIQNNLLAHITHQDLRRYGLIPEIIGRLPILTYLDALDSESLLRILVEPKNAITKQY QKLFEMDGVRLTFDEDALKYIVSIAVETKLGARGLRSIVEKIMIDAMYEIPSLKRKTLRI TEQYARSKVTPSMTASLAN >gi|228307672|gb|ACLR01000170.1| GENE 14 15124 - 15840 1058 238 aa, chain - ## HITS:1 COG:TM0695 KEGG:ns NR:ns ## COG: TM0695 COG0740 # Protein_GI_number: 15643458 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Thermotoga maritima # 36 223 14 201 203 235 56.0 4e-62 MTDHNKDFVHYAHAHLRMNTNALNDYITASAGYINPTIIEERQLNVAQMDVFSRLMMDRI IFLGTEVNDYTANVIQAQLLYLDNADPGKDISIYINSPGGSVYAGFGIYDTMQYVGCDVS TMCTGMAASMAAVLLVAGAEGKRYALPHSRVMIHQPMGGMQGQASDIEIAAKEILKVKAE LYKIIADHSGRSVEEIERDSDRDKWMTASEALEYGMIDKVLTSTKQTAKEKKADGKEK >gi|228307672|gb|ACLR01000170.1| GENE 15 16544 - 17236 414 230 aa, chain - ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 85 177 167 259 292 82 52.0 7e-16 MSKHLRIWLFAILGTLLASTTLLAQGVITMTTSKRVGETILLKVVANGNVSIEGALENGE MSEDGFKFYTTKNQTITIRGDVTELDCNENQLTCLNVSKNTALKLLDCSWNQLTSLDMSK NTALETLYCNDNKLTSLDVSKNTALDLLYCSNNKLTNLNISGCARLRIIACDSNYIKGKA MTKLVNSLPNRRGMYCGIIYLVDRSSKKKDKNSCSDADVTISEKKNWRVL >gi|228307672|gb|ACLR01000170.1| GENE 16 17911 - 18084 87 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470616|ref|ZP_04055473.1| ## NR: gi|228470616|ref|ZP_04055473.1| hypothetical protein PORUE0001_0819 [Porphyromonas uenonis 60-3] # 21 57 1 37 37 67 100.0 3e-10 MHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSGQSCLQDWETVDFCNSLL >gi|228307672|gb|ACLR01000170.1| GENE 17 18102 - 20195 2110 697 aa, chain - ## HITS:1 COG:slr0020 KEGG:ns NR:ns ## COG: slr0020 COG1200 # Protein_GI_number: 16331409 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Synechocystis # 4 678 134 815 831 460 40.0 1e-129 MSFLTTPLADLPGLGTKRAQLIAEELDLHTYRDLLYHIPYRYADRRVIYPIGSLMPSMSE VQVEGILQPFSAPSLGRKSNLSARLMDDTGELLLVWFKGQDYIQRSLTPGCKYIVYGKLQ LFNNQLQITHPEIKLADKPNPSVGGYQPIYRITERLKRSRIDSAFLGRYIDQLLQSPYFS IPETLSEPLIAHRHLVPLQTAIRWIHHPQSVEQAQVAKFRLKYDELFYLNLYLRRLAVMQ RMRYEGYRLDQVGPLFNSLYHALPYDLTGAQKRVLREIRRDTNSGAQMNRLLQGDVGSGK TLVALFAMLLAVDNGYQACMLAPTEILAQQHYETISEFVEGLDVSIALLTGSSKTRERRE TLSALADGSLSILIGTHAILEERVAFRKLGMAVIDEQHRFGVAQRSKLWGKNVLTLPHIL VMSATPIPRTLAMTMYGDLEVSVIDEMPPGRKPITTVQIAEKKKETLYSLINETINRGQQ IYVVFPMIEGTEESDFANLEVGYKEYVERFGEERVVYVHGRLSAEDKAEQMERFASGEVP ILLATTVIEVGVNVPNATVMVINDAQRFGLAQLHQLRGRVGRGGDKSYCLLVTPDDLQGD AKQRIDTMVATQDGFKIAEEDMRLRGFGQMEGTRQSGTLAGISIADPVADYNLLALTRLD VNYLLDYSPLLDKPDTELYRINLERIHPNAHHWGQIS >gi|228307672|gb|ACLR01000170.1| GENE 18 20225 - 20977 593 250 aa, chain - ## HITS:1 COG:CAC3184 KEGG:ns NR:ns ## COG: CAC3184 COG1211 # Protein_GI_number: 15896432 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2-methyl-D-erithritol synthase # Organism: Clostridium acetobutylicum # 16 232 5 223 229 99 28.0 6e-21 MEQVIKESDHTKRYLIIPSGGSGVRMGAELPKQYIKLGGKTILQHTVEAMLPHTDFIILG VSYDYWVVIEDAIQRMRLADRIQLSVAGKTRFDTVRKALRTVPDGTLVGIHDAVRPFASK AVVDKCYEEAQRVGAAVPVLQLSESLRYHPDEGAGAQPSQAVDRSRYRLVRTPQVFWSER IKEAYQQPYQESFTDDCSVYDQLYSDLALVPDTTENIKITTPDQLYWAEHLLTTSRQERL RLTQRLLSSR >gi|228307672|gb|ACLR01000170.1| GENE 19 21005 - 22315 1440 436 aa, chain - ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 5 436 6 435 436 375 47.0 1e-103 MSNLVAIVGRPNVGKSTLFNRLTRSRQAIVTDEAGTTRDRQYGHVTWCERTFSIVDTGGW VLRSDDVFEEEINKQVRIAVEEADLILFVVDILNGVTDLDDEIALMLRQTSKPVILVANK ADNFTQHNDAAEFYSLGLGDPHPISAINGSSTGDLLDHILGLLPKEGNHEPLLELPRFAI VGRPNAGKSSLLNALIGEERNIVTDRSGTTRDSIFAEYDKYNQHFYLVDTAGIRKKGKVN EDLEYYSVIRAIRAIENADVCIMLIDATRGIEAQDANIFRVIQRNSKGLVVCVNKWDLVE DKSLPVQRTMEEAIRARFAPFTDFPIIFISALNKQRILKVIEMAQHVYDMRSTRIPTHEL NQVLLPLIEKTPPPSIKGKYIKIKFVQQLPTAVPTFAFYANLPQWVREPYKRFLENQIRK NWDFCGTPINVFLREK >gi|228307672|gb|ACLR01000170.1| GENE 20 22392 - 23312 952 306 aa, chain - ## HITS:1 COG:BS_bex KEGG:ns NR:ns ## COG: BS_bex COG1159 # Protein_GI_number: 16079583 # Func_class: R General function prediction only # Function: GTPase # Organism: Bacillus subtilis # 14 304 4 296 301 232 38.0 7e-61 MTELRHLASNPLPEGYKSGFVSIVGNPNVGKSTLMNYLVGERISIITSKAQTTRHRILGI VNSDRMQVVYSDTPGVLQPSYKLQERMRAYSEQALEDADLLLYVTDTMEERDKHHDFVER VQRLSCPIIIVINKVDLTEQKHLEELVDYWHSVIPQAEIIPVSALRQFNLAPLKKRIEEL LPVSPPYFEQDALTDRPARFFVSEIIREKALQYYHQEVPYAVEVVVEEFVESPDRIDMRC VILVERESQKGIIIGHKGSAIKRLGISARKDLERFFDKHIHLTLLVRVDKDWRQSDQALT QFGYDI >gi|228307672|gb|ACLR01000170.1| GENE 21 23284 - 24306 1170 340 aa, chain - ## HITS:1 COG:aq_1099 KEGG:ns NR:ns ## COG: aq_1099 COG0332 # Protein_GI_number: 15606369 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Aquifex aeolicus # 10 328 5 307 309 252 41.0 7e-67 MISTQYNAMITAVGAYLPEDRLTNADLEQMVDTTDEWIMTRVGIKERRILKDKSLGASYL AIQAVRQMLERWDIDPLSVEGIILATNTADYHFPSTASIVAFETGCRHAFTFDINSACPS WLYALETGANFIRSGQYKRLIVVATEKMSAAIDYTDRQTSPLFGDGSGCVLLERTEDTSL GVQDALFKTDGNGRSHLIMKSGGSASPATAETVARREHFVYQEGQHVFKNAVLDMARVSR EVMKRNHLTNDDVAWVVPHQANMRIIQAVSEYTEVPMDKVMVTIEKYGNISSATIPICLW EYEPKLKKGDKLILSSFGAGYTWGAVYLVWGYDGATAPRK >gi|228307672|gb|ACLR01000170.1| GENE 22 24388 - 24681 226 97 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSARIVIKHYFTEVGGVNLPLFFCNLLNLLTFSGGNWESPRSKRKILRNFEIFLPKFHFI LPNFYFPAPWRIFVCSVEIPNFLGRKRSFHVISRGKE >gi|228307672|gb|ACLR01000170.1| GENE 23 24784 - 26220 2024 478 aa, chain + ## HITS:1 COG:BH2629 KEGG:ns NR:ns ## COG: BH2629 COG1875 # Protein_GI_number: 15615192 # Func_class: T Signal transduction mechanisms # Function: Predicted ATPase related to phosphate starvation-inducible protein PhoH # Organism: Bacillus halodurans # 43 478 3 442 442 300 39.0 6e-81 MPTAKKKTTSATTERKETISKRPFKMKPRAKATSPATVLSHSKNFVLDTNVILHDYECLD KFEDNDIYLPIVVLEELDKFKKGSDQINFNARAFVRKLDELAGADFFEHGADLGEGRGRL YVYLGNKPHERVAHAFGENIPDHKILSATLHIAEANPSERTILVSKDINLRMKAKSLGIP VEDYFNDKVPTFDLFDQAQPTFEGIDAELINRLYDNEQGISLDELDFGSKIQPNECFVLK SDQSSVLVRYNPFEAMVRRVDKYTHMGITPRNAEQAFAFDVLMDPNVLLVALSGKAGTGK TLLALAAALDQADHYGQIMLARPIVALANKDLGALPGTEQEKVRPYMQPLFDNLNVIKSQ MKGGKQQAELEKLQQDNKLIIEALAYLRGRSLADAIVIVDEAQNLTPHEVKTIITRAGEG TKMIFCGDVDQIDSPYLDSQSNGLAYMIDRMRGETLFAHVNLIKGERSELSELASHLL >gi|228307672|gb|ACLR01000170.1| GENE 24 26255 - 26746 559 163 aa, chain + ## HITS:1 COG:BH2241 KEGG:ns NR:ns ## COG: BH2241 COG0780 # Protein_GI_number: 15614804 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Bacillus halodurans # 11 159 5 153 165 228 69.0 3e-60 MKETTSPSTARDGAVEGLSLLGNKRTVYAQDYDPSVLEAFENRHQDRDYHVRFECPEFTA LCPITGQPDFATIYIEYVPDVRMVESKSLKLYLFSFRSHGAFHEDCVNIIMDDLIRLMDP KYIEVTGDFSPRGGISIVPFCNYGRPGTPYEAYARERMLAFHH >gi|228307672|gb|ACLR01000170.1| GENE 25 26759 - 27655 1135 298 aa, chain + ## HITS:1 COG:BH1953 KEGG:ns NR:ns ## COG: BH1953 COG1597 # Protein_GI_number: 15614516 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 8 261 2 251 295 123 30.0 4e-28 MKGAKRKYLTIINPHSGTSRKTSIPELAYNILSENGSELYFVYTNEQGHVAQIIDDVATQ GFDVVIGVGGDGTINEVADAVRPTDMAMGIIPMGSGNGLARSLDIPMDPEGALEVIRKGY VKRIDCCEANGVPFFVTFGVGFDAQVTASYDQKSFRGPLSYIISTVDQFIKHKSSLYRLH LNGEVIEQKAFLVTCANADQYGNNAIIAPEAELDDGLFDVVVIRNMSLLKAPQVAINLFT KNINESASIDIYRTDHLIIEREEADYAQVDGELLELGRRIEITIQKQQLPILVPLLKS >gi|228307672|gb|ACLR01000170.1| GENE 26 27783 - 28550 894 255 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470583|ref|ZP_04055440.1| ## NR: gi|228470583|ref|ZP_04055440.1| hypothetical protein PORUE0001_0828 [Porphyromonas uenonis 60-3] # 1 255 1 255 255 496 100.0 1e-139 MVESNPDVGLWFVRNGFSKPAKTIVGGNTFSSENNYYTVLITETQGGIVFSFSAKKKPSA PNVAEDTSIFPSYNFGEKFNPADVPTPGTPAGSIYTSEMAKGEDVTYRAPMKGDDGKIDY ASTRLEVSIKGLSKLKAAAISGYHYCAASNATKDNMNVYNKGALTINPTKQFKTGIDKEL RAVLEKAGYQYTGLGKDQFGNEYWYYYNAEHTISLHVVKLTGLGSTLLGSDFWPGDDYKP EPGKQIRLNTRYIHH >gi|228307672|gb|ACLR01000170.1| GENE 27 28769 - 29179 173 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470594|ref|ZP_04055451.1| ## NR: gi|228470594|ref|ZP_04055451.1| hypothetical protein PORUE0001_0829 [Porphyromonas uenonis 60-3] # 1 136 1 136 136 257 100.0 2e-67 MLQTEKVITDAKGNNLKNYVFNTQDKSSKQPLRIYLIGNSGEGKLQISTVLIDEQLVYDQ KGDVRRDFDIMTINDGFEAMDESSSKSPMYRKGNLIVGVSRGAVAGYAQLSFLPMPGSVA EVDLDKTLQDFPLPAS >gi|228307672|gb|ACLR01000170.1| GENE 28 29158 - 29439 331 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470564|ref|ZP_04055421.1| ## NR: gi|228470564|ref|ZP_04055421.1| hypothetical protein PORUE0001_0830 [Porphyromonas uenonis 60-3] # 1 93 1 93 93 185 100.0 8e-46 MNKQISLILALIMSTCFGLVGCYQDCPDDGGDPNKKDPNKEDPIQQGEYTPIYELDADGN LKHLPIPFVDFTAGEHPLKSGRQLMAPCYKRRK >gi|228307672|gb|ACLR01000170.1| GENE 29 29817 - 31049 1297 410 aa, chain - ## HITS:1 COG:CAC0476 KEGG:ns NR:ns ## COG: CAC0476 COG2195 # Protein_GI_number: 15893767 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Clostridium acetobutylicum # 1 404 1 406 408 338 44.0 1e-92 MSQLLERFLRYAKVHTTSDPNSPTKPSTSCQWDLLRLLHSELEALQIPATCYDAGYVIAQ IPATAGYEKVPRIALLAHVDTSPEAPGEKVSPCLHPNYDGKPIQLKGSILSPSDYPDLLR YVGHTLITSDGTTLLGADDKAGVAILMTLAAELQSKPELAHGPIALAFTTDEEVGRGLES FDESQLQATYAYTIDGGLEGEFEYECFHAASVRITATGHNVHPGSAYHTMRHALQSLIKL DYRLGYTHERPEVTQGREGFLHLCHMAGDVSSATAEYIIRDHDRQLLEERIACIREVAQQ INEEPHAAQLAVEVSYQYRNMYDYIAPHPEVIEHAVAAYEAVGVKPIIQPIRGGTDGAVL SERGIPCPNIFTSGGNFHSIHEYCSLDAMERCLAIVTQLVRRYATSGALE >gi|228307672|gb|ACLR01000170.1| GENE 30 31065 - 32327 1346 420 aa, chain - ## HITS:1 COG:YPO2406 KEGG:ns NR:ns ## COG: YPO2406 COG2050 # Protein_GI_number: 16122628 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Yersinia pestis # 289 419 10 138 138 91 37.0 3e-18 MTDQAKSGGYKFLAIKDRDCLLGSNGQIALEDREALLEVQEEYALRVAIASEAPMTSLLK LSEQLQLPRNSGYIISHLGARVHNCRTGRELASRPLRPAELTRLYELVNSDYTLALIGEK ALYATKTHQPRVLQLAKLWGMPILELAEADESFQAPSEPIFRALILARQDRLEKLSERLK AEQTLTATLYDEPMNELSIVASGVSLRGALDFILDRLDLNQQNIIAVGTTLEDVAMVQRA GLGVAMANAPEPLKSCADYITTSCDAAGLAHMITKQIKLRYDGVPFDPEDANAIMPNTLM GALGMRCTEIAQGYVTGTMPVDSRTRQPMGILHGGASLAFAETLAGLGSVAIANEGEIQV GMQVSGYHVSSTVVGDTVRGVATILHKGRSTHVWNVDIYSTQSGKLISTCRVINSILKQR >gi|228307672|gb|ACLR01000170.1| GENE 31 32339 - 34147 1651 602 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470574|ref|ZP_04055431.1| ## NR: gi|228470574|ref|ZP_04055431.1| hypothetical protein PORUE0001_0833 [Porphyromonas uenonis 60-3] # 1 602 1 602 602 1184 100.0 0 MKRLYILLPVLLSSLLPALAQKPTPPAKRDTISREVTVVSEKVRQIDDTNPIFTLIPLTK PQIERYNPATPRSTRDFTPTLSPAPTPQLSSFAREVPQPYNGIMARLFGGFAPAFGGDLA GQWHFGSKHNVLSLDLTHRSELFTLSKNGPNRSVHGPMDQSDPDYHYLEEVPRQTEMYRH ATEGVLGYSYHWKESTVKLQGGIRSHIFAHTPTQHRMQMGTLPLLDRTRWQDKLREYSLT GRIENLQAHNWTFDLGARYAFLYHSLPSPAPGDLLASEYLHTIDADGATAVQLSEDWSLG LSADMRIRTSQPSQLFLLRAHPQFRYRGFVNFADLDFSGGVGVDFANQEVLVYPEVRLSL SDQRRWEWYLRASGGIQDVLPFDYLARIPGVMLNALPRPERQQLGSRTGVKLQLGSGTYE LYGGYDHYGRTYGFNLLPYYTGEELYCSWLQSQRNDYTKLDIFYAGLDLSTVIAKVCELS LGAQFNRQANFSVRVPKPYFQSYAKLAVRPMRRLDLRGVVYYDTCLSPKILHPAQAPKTG LREGAAWASLTRFTAEVTAQYRLTDMWTLFATFDSQYYGLGTYNMKQPYSGRIGVQFNWS AL >gi|228307672|gb|ACLR01000170.1| GENE 32 34191 - 37202 3474 1003 aa, chain - ## HITS:1 COG:no KEGG:PGN_0464 NR:ns ## KEGG: PGN_0464 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 7 994 6 994 995 360 29.0 1e-97 MNYKGYLYTLLLCGSLPLAYPLQAQETFSRPTEQHAIEVTLAAGSPLRTMTLLSSTRRLS EADGWFATYGAHLLGRPSAAAELEEYITREPVSRQAQIARIARATHYLYNKEYNRARHTL EQVRERTLTREARSEWQVKMAYALLLSGRSVDQVERLFELTADNGGYWGDVARLYLAQLY IAQNNLDKAERTLLPIQDQGDLQYDARLGLARIALYRQNYQSVLTHTEALATARLSEEQR TESQILEANAWYRLEEPSKAIERLAPLAEQKANALTPEDQLILAAAYMETERTEQAIPHL LLATRGDAETSGVANLYLARARRDMGLYSEALASYQVAADRAVAPTIREAAIYEQVLLMR SKAGGSFGQEVRLCEEFLNTFAQSAHREAMEHFLIESYYRSPDYLTSLASIGRIKNPSPV IVEAQCYLLNQLTQQAQQAGDLALAQHYNQQAQGLGTRSTHHTEAELLGAQLLSQQGAYK RASQALTAILNKRTATSAQLQIARYLLGYSQIKQKQYSAATQTLSILLQEGTLDNTLQAD VHARLGDAHYMQGHYTPAVRYYEEAYRIAPDNQVYALYMLSDIEGLKKDYKAQIAALDKL IARHPNSLYKPRAMYDQGRAMELYGQHAEAIGTFTRLTQEYPQSEYGRKAALQLALLYYN RNETNRAIETYKALLAEAPQSGEAKQAYEALKSIYIEEGRSTEFVQYANSIGGSYAINES EAMSISFETAERAYQSRQPQAERLLKEYLALKPQGASSLLAHYYLGDLYERAGKEADALT LYERIYPSRKQLSQELHIGLLQRMSTIRLHQRAFAQALPLQQELLTLPLAPASYQTTLLS ATESALHAGQYAWVIKVVTPQLDKAKGWSQEQLDLLTCRLATSYLKTGRGNQIESLLKPL VARIGTYAGSQGTLLLAQYYVSNKVQQSYSKQLLDKLVNEAYPDPDLSAETIITLSDWYL AKGDPDTARLYLESLLKNYTDETSPIRQRATEKLAQLRQSTAR >gi|228307672|gb|ACLR01000170.1| GENE 33 37336 - 37593 201 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALSRKSDNSSVEIVDYPARKRKILRNFEIFLPKFHFILPNFYFPVPWGIFICSLEIHDF LGRIWNQRRCRSHCGVRLERYIARI >gi|228307672|gb|ACLR01000170.1| GENE 34 37825 - 38052 209 75 aa, chain + ## HITS:1 COG:no KEGG:PGN_1752 NR:ns ## KEGG: PGN_1752 # Name: not_defined # Def: putative ferredoxin 4Fe-4S # Organism: P.gingivalis_ATCC33277 # Pathway: Citrate cycle (TCA cycle) [PATH:pgn00020]; Metabolic pathways [PATH:pgn01100] # 1 75 1 75 75 100 74.0 1e-20 MAKFRGAIVVNEQRCKGCNLCVVACPTTSISLHPDEVNDKGYHYCYMSSPETCIGCANCG VVCPDGCISVYKVTL >gi|228307672|gb|ACLR01000170.1| GENE 35 38067 - 39146 1556 359 aa, chain + ## HITS:1 COG:TM1759 KEGG:ns NR:ns ## COG: TM1759 COG0674 # Protein_GI_number: 15644505 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Thermotoga maritima # 6 354 8 350 356 361 52.0 1e-99 MAEVKLMKGNEALAHSAILNGLDGYFGYPITPQSEVLETLMSLRPWEKTGMVVLQAESEV SSINMVYGGAGAGKRVMTSSSSPGISLMAEGISYIAGAELPTLIVNVMRGGPGLGTIQPS QADYFQTTKGGGHGDYRLIVLAPYSVQEMVDFVGLGMDLAFKYRNPVMMLSDGIIGQMME KVVLPDQKPRHTDEEIAASCPWATTGHTPDKRAIITSLELDSAVMEQNNLRFQEKYRKIE ENEIRYEETMTEDADYVLVAFGSSARICQKVVQVARQEGLKVGLVRPITLWPYPYEVISK LAERGVKGFLSVELNAGQMVEDVRLAVNGRCPVEHFGRMGGMLFSPDEVLNALRTKLVK >gi|228307672|gb|ACLR01000170.1| GENE 36 39189 - 39992 1119 267 aa, chain + ## HITS:1 COG:MA2909_1 KEGG:ns NR:ns ## COG: MA2909_1 COG1013 # Protein_GI_number: 20091730 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Methanosarcina acetivorans str.C2A # 4 252 12 262 296 245 47.0 5e-65 MDIKDITKPENLVYQKPSLLNNNTMHYCPGCSHGVVHKLVAEVLEEMGMGDQAVGIAPVG CSVFAYNYIDIDWQEAAHGRAPAVATAIKRLYPNKLVFTYQGDGDLAAIGTAETIHAANR GENIVIIFINNGIYGMTGGQMAPTTLLGMKTVTCPDGRTPELNGYPLVISKILSELDGTC YVTRQSVHTAGAVRKAKKALRKAFENSLAGKGTSVVEFVSTCNTGWKMTPAKANEWMSKF MVDKYALGDIKDVESKGSNDEVVTMKI >gi|228307672|gb|ACLR01000170.1| GENE 37 40012 - 40557 701 181 aa, chain + ## HITS:1 COG:MA2909_2 KEGG:ns NR:ns ## COG: MA2909_2 COG1014 # Protein_GI_number: 20091730 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit # Organism: Methanosarcina acetivorans str.C2A # 7 173 12 177 186 129 41.0 4e-30 MNYEIVISGFGGQGVLSMGKIIAYSGIMENKEVSWMPSYGPEQRGGTSNVTVIVSDEPVS SPVVNEYDVVIVLNQPSLDKFGPRVKKGGILIYDPALIQHKSDRKDINIYEVPATEQSME MGNDKIFNMIILGGMLKAAPMLKLESIIAGLKKSLPERHHKLIPLNEEAIKRGMNSLSKV N >gi|228307672|gb|ACLR01000170.1| GENE 38 40726 - 43179 2374 817 aa, chain + ## HITS:1 COG:CC2451_1 KEGG:ns NR:ns ## COG: CC2451_1 COG0550 # Protein_GI_number: 16126690 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Caulobacter vibrioides # 6 586 2 568 571 424 43.0 1e-118 MAKQKNLVIVESPAKAKTIGKFLGADYKVLSSYGHIRDLKPSSFSVDVEHHFAPIYEIPA DKQRLVSELRKAAKASDVVWLASDEDREGEAIAWHLYHVLDLQNKETHRIAFHEITKSAI QHAIQNPRSINENLVDAQQARRVLDRIVGFELSPVLWRRVGPSLSAGRVQSVAVRLIVER EREILAFQPETSFAISSRLETKGGETFTATLPDNLPSEEAARQLMQRAIDSQSTFAVQQV EQKPGRRSPSAPFTTSTLQQEASRKLGMSVSNTMRVAQALYERGLITYMRTDSVNLSSLA LHDAETVILEQWGADYYQRRHYHVKSKGAQEAHEAIRPTYLRNATIQGTKQEQALYDLIR KRTLASQMADARIERTIAQIASQGAEPVRLEARGEVIVFDGFISAYTESRDDEEDTSSNE LPKLKAGDLLQLREIEGRQSFTKPKPRYTEASLVRKMEELGIGRPSTYAPTIQTIQNRDY VRRGESQGESRAVLYLSWQHSAGNTTIQSHQQKERYGGDRGRLVPTDMGIVVTDFLTENF SRVVDYNFTADVEERFDKVAEGEAQWQDLIGTFYDKFHPMIEEQSQSGAKRYTGERLLGT DPVSGKPVIARIGRYGPMVQIGEAPDNDLPEAERERLKPRFASIPSNLLIETITLEEALK LFDLPRTVGEFEGGDVVAAVGRFGPYLRHKGAFTSIPKSSGLTPEEITLQEAIELIEEKR RKDAASLLKSFPEDPDIAIRDGRWGAYIKAGKKNYKLTKEQKADPTKLTYAEVVAIIAEQ DKETPKKGRTTTKKTTTKKATTTAKKAAPKRSAASKS >gi|228307672|gb|ACLR01000170.1| GENE 39 43202 - 43990 885 262 aa, chain + ## HITS:1 COG:VC0999 KEGG:ns NR:ns ## COG: VC0999 COG0101 # Protein_GI_number: 15641014 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Vibrio cholerae # 7 253 2 244 264 144 37.0 2e-34 MEAPIQRVFLEVAYDGTNYCGWQVQPRGVSVQSELERALSMLFRQPISVTGAGRTDAGVH AYSMMAHADLPIPHPPLAQIQRGLCGILRGGISVRSVTPVIPTAHARFDATSRRYHYYIS ACSNPFWGDYCWERRTLPDMELMNEACRHFIGEHDFTSFSKLHTQTKHNRCTVYTAHWEQ VEMPGLWDAMRYEVCANRFLHGMVRTMVGTLLEVGYGQRTPDSIAELIQREDRTLAGSAA PARALFFVEATYPDSIYSLDPQ >gi|228307672|gb|ACLR01000170.1| GENE 40 44520 - 44987 505 155 aa, chain - ## HITS:1 COG:SA0516 KEGG:ns NR:ns ## COG: SA0516 COG0590 # Protein_GI_number: 15926236 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Staphylococcus aureus N315 # 12 155 4 152 156 117 41.0 1e-26 MTGLPPIDPLLDERMMQLALQQALVAYEADEVPIGAVIAVGTRILAKSHNQVELLNDPTA HAEMLAITQATAAIGGKYLPQCTLYVTVEPCPMCMGALRWTQIGRIVYGAADPKGGYMRY SSTLPHPKSVVMGGVCEEECRELMVSYFQRKRRSR >gi|228307672|gb|ACLR01000170.1| GENE 41 44991 - 46100 996 369 aa, chain - ## HITS:1 COG:BH2868 KEGG:ns NR:ns ## COG: BH2868 COG0526 # Protein_GI_number: 15615431 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 234 352 48 167 184 62 31.0 1e-09 MSTHTTQRRLSRTLLLLLILVLSLLCSCHKQQRYHISGYTDAQEGADPPLLKLTLDGKTI DSCFVYKGEFHLKGDYVDSMGQDIAYLEITGEQPIPIVLSTQPLVIDFIKRRLIEGDYLN QELDRLYVSLDSLGGDFKRKLANVPPDSALYDAFDQGFKSAIDNYTALAKDYCLRHPNDP VGIIASVMLLTINYESLLETAPFVRSHMGPLVLKNKEIDLYLSTVDNFYRTAPGTPIIDL PLETLEGDTTSLSEQLLPGCYTLLHCWAGWCKPCLDEMPNLIKAYKIYHERGLNMVGIFL WDDRYNLKMLQSEYQLQWPQLYEPTAHTSITYGIYSIPEIMLIAPDGTISARSLRGAELF DTLESIYHR >gi|228307672|gb|ACLR01000170.1| GENE 42 46119 - 46838 889 239 aa, chain - ## HITS:1 COG:jhp1180 KEGG:ns NR:ns ## COG: jhp1180 COG0846 # Protein_GI_number: 15612245 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Helicobacter pylori J99 # 10 236 2 225 234 226 50.0 3e-59 MTNPSNQAKRKLVILTGAGVSAESGISTFRDSDGLWENYPVQDVASIEGFVRNPQLVLDF YNARRRDYVGCEPNAAHYGLAELERQYDVTVVTQNVDNLHERAGSSKVIHLHGELMKNCS VRNTQKTYPVDPKHPDLHVGDLAPDGSQLRPFIVWFGEAVPMIEPAIREASQADIMVVVG TSLNVYPAASLLAYVPNGTPIYLIDPKEVNTHGIAHVTHIQKVATQGVKELLDILMPQS >gi|228307672|gb|ACLR01000170.1| GENE 43 46880 - 47494 688 204 aa, chain - ## HITS:1 COG:NMA0075 KEGG:ns NR:ns ## COG: NMA0075 COG0164 # Protein_GI_number: 15793104 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Neisseria meningitidis Z2491 # 12 200 3 194 194 167 46.0 1e-41 MSLLHRYASDGLIECGCDEAGRGALAGDLYAAAVIWPDTLDHPHLRDSKKLTAKQREELR HFIEEHATAWAVGVATVQEIQQINILHASMLAMQRAIEALSCTPERLLIDGNYYDPRPDE VEYHTIVKGDDRYLAIAAASILAKTHRDEYMTQQALEYPHYGWEQNKGYPTAQHREGIRQ HGSCPLHRQGFQLLQPEPLFDLEK >gi|228307672|gb|ACLR01000170.1| GENE 44 47503 - 48729 1265 408 aa, chain - ## HITS:1 COG:SP0869 KEGG:ns NR:ns ## COG: SP0869 COG0520 # Protein_GI_number: 15900752 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Streptococcus pneumoniae TIGR4 # 5 402 3 399 408 363 47.0 1e-100 MSSTDLSSYRLDFPLIQHYASAQPGWVYLDSGATTQKPQVVIDAITEGYTRYNANVHRGV YQLSREATDRHEAARATLAHFIGASDPNEVIFTRGTTEGLNLLASTAGETLVGPDDEVLI TAMEHHANLVPWQQLCLRKGAHLRVAPLLEDGSLDLPAFEALLSDRTKIVSVAHVSNVLG TVNPIAQLARLAHDKGAIIIVDGAQSAPHMSVNVQELGIDAYVCSSHKVYGPTGIGIVWG RRKLLEQIPPYQYGGEMIEHVSFEETTFNELPYKFEAGTPDFIGSHAFATAVEYISAIGL DRIHAYETELLEHLTQIISQEPSLEILGTAPSKGAVVTFISHQAHAYDLGLLLDQQGVAL RTGHHCAIPLIEGMGHHATIRASLGLYNTHEDLEIFAKALHRALTMLG >gi|228307672|gb|ACLR01000170.1| GENE 45 48752 - 49633 1032 293 aa, chain - ## HITS:1 COG:Cgl0443 KEGG:ns NR:ns ## COG: Cgl0443 COG1575 # Protein_GI_number: 19551693 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Corynebacterium glutamicum # 1 281 11 290 298 130 35.0 4e-30 MTLKQFISVSRPYSWPASLAPIAVAIALAWLQGDSNWLIGTLCLVVGLSAQSFSNCCNDY YDFKRGADGEERVGFSRPLASGQLRERDIIGVALFWGLIAAVSGVTLCLLTSPWLLLLGA LIILFAWMYTGGPFPLAYLGLGDVAVMTFYGWVAVITTYYLLTGAVTTQSFLVATAMGAV AVNILVVNNYRDYEEDRKNNKRTSIVRLGQEFAPKFYLANILLAWLLSIVAFKGNIWGIV LLLPYLLYALSVYRQMIHVTGSQLNAVLRRTSLGVVLLAVVHIAAYLIDGLLL >gi|228307672|gb|ACLR01000170.1| GENE 46 49667 - 51043 1342 458 aa, chain - ## HITS:1 COG:VC0391 KEGG:ns NR:ns ## COG: VC0391 COG0527 # Protein_GI_number: 15640418 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Vibrio cholerae # 3 447 34 476 479 170 28.0 5e-42 MIVLKFGGTSVGSPDRIRSVAHLVACIPGRKTLVLSAMAGTTNDLVTLTQLITSGERDRA TRHVEMLRSRYIDNVVPELFAGHELHQQLAEEALTPILDSLLLQTLNEAFTHNDEKQILA CGEMMCTALMALTLQLYEGITPHKLLALDFMRITHEGRPDIEYIAQRLRPMVEGVRDAEA LFLTEGYICRNAFGEVDNLRRGGSDYSATLIGEAVQAEEIQIWTDIDGLHNNDPRVVNMT SPVRRLSFGEAAELARCGAKILHPACIEPARRAGIPVRLLNTLDPSAPGTLISHVTNRDM IKAISAKDGMCVVTLLLKHLSNSDVSTGQFLITLTEAMHRLHIEPDILMASGDGYVIVTE EDSGAIDTLIKEMTPWAEGSVQSDLSILAIVGDMGWHRIGFEARILEAVDDVAVRLICYG TSSNSIDLVIATEEKKRAMVYLSDHLFAHLRTPGPEVL >gi|228307672|gb|ACLR01000170.1| GENE 47 51040 - 51789 296 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 1 214 1 214 223 118 35 1e-25 MSTIIDLQGVTVSRQEHELLRDVTLSLEAGDFAYLTGPVGSGKSSLLELLYGELAPKGGV AKVLDYNLHRMSVRQRQALRRSLGIVFQSQAQLLYNYTVQGNLDFVLRAVGVKKREQRAM RIEEALKQVGMEGKHYKYPHELSGGEAERICIARALVVRPRLILLDEPTTGLDSETSLLI GQLIQSLAKEGVAVLMSTHNETLIQELPATRYHINLESRTLERIDLSPTLEQVEGTSSEP FTDPIEVAL >gi|228307672|gb|ACLR01000170.1| GENE 48 51816 - 52343 431 175 aa, chain - ## HITS:1 COG:FN1233 KEGG:ns NR:ns ## COG: FN1233 COG2249 # Protein_GI_number: 19704568 # Func_class: R General function prediction only # Function: Putative NADPH-quinone reductase (modulator of drug activity B) # Organism: Fusobacterium nucleatum # 6 172 7 176 180 153 40.0 1e-37 MKNHNTLIIVAHPDLEHSVINKAWMEALTGHATIHSLCDAYPTGTPIDVAHERALVERHD RVILQFPLYWYSAPAILKQWTDEVFGEGWAFGEGGDAWVGRQLGVAVSCGSAEANFCEGG SQKHTLATFLTPYEGLAAFARADYIGHHAFYDTYSDTVAERLPANCEAYLRFALQ >gi|228307672|gb|ACLR01000170.1| GENE 49 52350 - 53039 943 229 aa, chain - ## HITS:1 COG:no KEGG:PG2106 NR:ns ## KEGG: PG2106 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 226 1 224 227 114 33.0 3e-24 MTRLRTLLLSLVALCALGGTAQAQMPLRIYVDAAPLFNLSQAKTLQDVSENKVFVGYRLG AGLDVNVGKMMYVGTGLSLAMKGNQYTVLDLMGKSGDIKVYSHYMQIPINVGVRLNVTPR IGCSIEAGPYFAYALGATVSQGKILDDIQKTYNVYKDGILGMDSAKLKRYDIGLGAKAKV TFGSWYGMLGADLGFVDELKLEKNDPKIEKLGQKAMRNTSFYLGAGFTF >gi|228307672|gb|ACLR01000170.1| GENE 50 53428 - 53691 292 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHFETLRHPRPHTSEEIENLQGANENPPRRHKKNLPNFDLLLPKFHFILPNFYFGPPWRK FVFYRAIRNFLRRRRKLDQFGHATLFF >gi|228307672|gb|ACLR01000170.1| GENE 51 53721 - 54779 1410 352 aa, chain + ## HITS:1 COG:no KEGG:PGN_0416 NR:ns ## KEGG: PGN_0416 # Name: not_defined # Def: putative type II DNA modification methyltransferase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 309 1 313 337 327 51.0 4e-88 MAQNKIEVDILEDKLPTSLLEILLQDHTTEKNIFWACNDYEELGAGYAFSDPITLGSIRG EHGRVIMPRVMKHRDLKRRRTKEKAEIFTPAWVCNLQCNCGDDGYLAEGSSFNYNLDAEG REWEATTEPIRFAEGVTWQDYILRTCMEITCGEAPYLASRYDAVTGETIPIYKRIGLLDR KLRVVGENVSDRADWLVWVTKSFQSVYGYEWQGDNILLARENMLYTFIEYYRDRWGEEPT LEEQTEIAEVIAWNIFQMDGLKFVIPNSCHEEVQHSGLFEADVKRVPCPGCKKNDPLLHN GIYAKIRDWQQDGVLHLVDVYRQGKARNEREAMEAKKAEAEQRQSKQRKKKQ >gi|228307672|gb|ACLR01000170.1| GENE 52 54776 - 58705 2534 1309 aa, chain + ## HITS:1 COG:MPN111 KEGG:ns NR:ns ## COG: MPN111 COG0827 # Protein_GI_number: 13507850 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Mycoplasma pneumoniae # 967 1113 248 394 422 68 26.0 1e-10 MSEELIDTLIIGRVEPYIYAFSTESVPNYLKVGDTYRPVLQRLDEWRRYFPNLRSRYSAV AKVDEETYFRDFAVHRYLEHQLQRSRLRPSDLSEELYYSREFFREATEEDLRQAMADIEQ SYERGEGRYDFFKFEESRIPVKHTYKRTESFEPRPNQRETIERFKKAISQGRSNLLMYAV MRFGKSFTSLCCAVEMQAKLVLVVSAKADVREEWKCSVESHVKFAEYSFLDKDKLMESET VLEDTLATGRAVVFLTLQDLMGSEIKQRHHALFDREIDLLLIDETHYGARAAEYGRVLKL NKRELKQETYELDSAEQYDDCTELKQLRSRVRIHLSGTPYRILMGSEFEAEDIIAFYQFS DIVEEQAEWDREHILSDEVKEWDNPYYGFPQMVRFAFLPNESSLRVMETLRADGYEMGLS ELFRPRSILRDNKEGRHRLFVHEDEILEFLQAIDGVQKDAHLLPFLDLEQIKRGQMCRHL VFVLPYRASCDAMEHLLTEYKELFRNLSDYTIVNIAGVDDPKRYCSTEDVKAQIADCERK GEKSITLTVNRMLTGSTIPEWDTMLYLKDCASPQEYDQAIFRLQNQYIRTLTTEDGSEQV KYNMKPQTLLVDFDPQRMFRLQEQRAQIYNVNTDQAGNKKLQERIETELRHSPIATIGAE GLQRVEASDIMDSVRSYSAERSVMDEATEIPIDYTLLADERMRSVISQLNPIDASKGIEI QAVTGEESELELETHDTPKGGGATSTQVAPSAETDEGRLLGKQLATYYAQILFYAFLTET PVSSLEDLIASISQGADNKRIARNVGLQASILQIIQTVSNPFVLRALDYKIANINTLMSD TSLIPSERVAVAMKKFGRLSSSEIVTPQAVALEMIDALDEGVITSETRILDIASKQGEFT RALVSRFGMAVGRNVYALPTSTVSYEFTLKVYRLLGLDTDHVISDFTTYDILDKEKKDRI MQQLIDMNFEIVIGNPPYQESDGGAGASSKPIYQEFVYASNEVAKSHSVMIMPARWYTGG KGLDQFREDMLTDKHIKLLYDYQRPDEVFPNTNNRGGVCFVVRDRRFDNSKGQTTIVSNY GGGKTSMQHRSLKTKGLKIFIRHQESITILTKVTKHPDFSSIANYISSRKPFGIEGNVVE DNSLFKRQRTKSNPILCYGRSSARGYVPLSLVKTNVDWIERYKVYIPYANNIGTELSDDN LNAFIGAPNTVCSETFLAVGVDLNLLEKEATNIVLYLKTKMVRFLHSLSKSSQHGTSKTY RFVPLQDFTADSDIDWSQSVTDIDRQLYKKYALTPDEIAFIEEKVRPMV >gi|228307672|gb|ACLR01000170.1| GENE 53 58730 - 60139 493 469 aa, chain + ## HITS:1 COG:STM2238 KEGG:ns NR:ns ## COG: STM2238 COG4928 # Protein_GI_number: 16765566 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase # Organism: Salmonella typhimurium LT2 # 46 344 37 340 443 96 24.0 9e-20 MYQIRTTDIEIPVGDPFRNCKLGRQQYAEVLKTLTIGNNNGCVISLNGAWGTGKTTFIQM FKQMMNNEGYPTLYFNAWETDYISDPIIGLIGELKKLEGKGTKSRVKDMAQKIGPILVKR AIPEFLKHVLKKHAGEECADILKEVAKGGAELFEAEIENYENQKKSIEGFKKVLGEYVST LGEKAPLIFIVDELDRCNPHYAVMVLERIKHLFSIPQIVFVLAIDKEQLCNSIKGYYGSD RIDAAEYLRRFIDIEYTLPSPDYRSFIKVELERLDFQALFKGSQKMNTWEETITSILVSF AEKSHLSLRQVQKMMNQVRLTYSTIDVNNENYTNRVIALFLLVYIRSFHSEVYDLITKKE ATLQEVASQIERCLPLSLFNKEAESNRAPKSLAHAFTVILLMYSNDENGYPKYSLFEKNE EGLKIKFSVERFHEDDIVEALKVYAGMPIYITLDSLISKVELYDNVRVN >gi|228307672|gb|ACLR01000170.1| GENE 54 60361 - 61104 542 247 aa, chain - ## HITS:1 COG:aq_1329 KEGG:ns NR:ns ## COG: aq_1329 COG0476 # Protein_GI_number: 15606532 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Aquifex aeolicus # 21 235 11 231 271 186 44.0 4e-47 MDVTRTPQNNTGNKGIADSARYERQLQLPEIGPEGQRLLAQTSVAVVGAGGLGAPILYYL TAAGIGRIAIIDCDVVSPSNLQRQILYCESDLAHPKAIQAQKRLIALNSTLHIEAITERL NETNVATLLADYQIIVDATDNYPTRYLLDDYTRSTAKPLVHGAIEGWRGQCTIFAPSSSL RYRDLYSEPHSAEKTVPPGVIGATAGVIGSIQASQTLQLALGQTPALLGKLLTVDLWHGS WHTFDLA >gi|228307672|gb|ACLR01000170.1| GENE 55 61095 - 62201 1423 368 aa, chain - ## HITS:1 COG:VC0066 KEGG:ns NR:ns ## COG: VC0066 COG1060 # Protein_GI_number: 15640098 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes # Organism: Vibrio cholerae # 1 364 1 364 370 389 50.0 1e-108 MTFYDYKQQYNWEQECAEFDTFTAQDVEHAIATATPTLRDFKALISPAGDAYLDAMATKA QQLSIERFGKTIRMYEPLYLSNYCHNHCVYCGFNQENKIVRKVLTMEEVQAEAKAIADMG FTHILLVAGESPKHAGVDYYRQVIELIRPMFAQISIEVQPMSVEDYKVLVEAGAHYVCVY QETYNEESYPRFHPKGLKANYRFRLETPDRAAEAGFRKVGIGALLGLDNWRTDAFFTALH LDYLESHHWQTKYSISLPRLRPHVGSYMPADPINDRQMVQLICAYRIFDPEVEISLSTRE SSAFRDMAVRIGANSMSAGSSTQPGGYVDPNPELEQFSINDSRSPEEMIAAIKAQGYEVI WKDWDQWM >gi|228307672|gb|ACLR01000170.1| GENE 56 62201 - 62983 734 260 aa, chain - ## HITS:1 COG:YPO3742 KEGG:ns NR:ns ## COG: YPO3742 COG2022 # Protein_GI_number: 16123879 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Yersinia pestis # 6 259 64 324 333 309 64.0 4e-84 MQTKSLKIGDHDFTSRLFIGTGKFANNQLMSDALDASGSELITVALRRVETSAGLHDTLI ESITRPNVIILPNTSGARTADEAVYAAQLAREALQTNWIKLEVHPDPKYLLPDAMETLRA TEQLVKEGFIVMPYIQADPVLCKRLEEVGAPCVMPLGAPIGSNMGLTTRDMLRIIIAEST VPVVVDAGIGRPSHAAEAMELGADAVLVNTAISTAADPVAMAIAFRKAVEAGRSAYEMGL HQPATDMTATATSPLQGFFD >gi|228307672|gb|ACLR01000170.1| GENE 57 63009 - 65030 1723 673 aa, chain - ## HITS:1 COG:PAB1645 KEGG:ns NR:ns ## COG: PAB1645 COG0352 # Protein_GI_number: 14521295 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Pyrococcus abyssi # 479 664 24 198 207 112 39.0 2e-24 MIVITPPERQLVEDVAGDIIDVASSCICKVHLRMPGASEADFRKVLDSLEPAYHQHVVLC DHYALLAEYDVAGVYLPYRRVAEWRNIPLAPHQTIAVGAHSIQELQELPFTPHYALLSPL FDSISKEGYQGNPALLSCREALIKLPYPVYALGGITPEKQEAVAKAGYAGVAVLGDIWSQ PWKQLPERLAQYQLPAILTVAGHDPTSGAGISVDTRIANDLSVQCYSVISTLTAQSLHRF VSTTATPSDQLQASLTTLLTDHPVTVAKLGMVQDLQQAVHIVAQMKALGVKRIIWDPILQ PTATEVTQPNLWTEEQDKLATLLNEVSLVTPNKPEAQALFGTDDPAELQRIAQKHDVAIL LKGGHDTTSPHLVVNQLITSDGIHPYYTHRYDKSIHGTGCMLSAAIASYWAMEYSLVSSV QRACHYLATIFAGQPNLPERQLLCPKIFRGSRKKQHLYFDFDLQYVTNESDPDRLYNKVS QYLEAGGRWVQLRLKEATTEERIEMGLRLRRLTDCYDACLLIDDDIIATIAVDADGVHLG KRDCPPQEARRILGDEYIIGYTVNSLDDLPRALAANIDYIGVGPYRDTQTKALLAPILGL EGISQIAQQVKETNRQFIVPQIVAIGGIRPEDAETLFSNKDIDGIAVSGAIEHATDMGHT VSQLLRDTSSFPN >gi|228307672|gb|ACLR01000170.1| GENE 58 65052 - 66824 2350 590 aa, chain - ## HITS:1 COG:PA4973 KEGG:ns NR:ns ## COG: PA4973 COG0422 # Protein_GI_number: 15600166 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Pseudomonas aeruginosa # 13 583 19 590 627 820 67.0 0 MKQKDQTDNLNISQGPLPGSTKIYVTGSRPDIRVPMRRIALSDTIDEEGVRHNNGSVVVY DTSGPYTDPDYHVDPHQGLPKIRQQWIEERGDTTRLSEQSSEYGRKRRQDTSLDHLRFAH LNDQPLVGTEEHPVTQLYYARQGIITPEMEYVAIRENQLIDEIREQYPQHLGESFGANIP ERITPEFVRDEIAAGRAILPNNINHPESEPMIIGRNFLVKINANIGNSPITSSIQEEVEK AVWAIRWGADTIMDLSTGRNIHETREWIIRNSPVPVGTVPLYQALEKVKGQADKLTWELY RDTLIEQAEQGVDYFTIHAGLRWQFIPLTMKRLTGIVSRGGAIMANWCTTHKRESFLYEH FDEICQICARYDVGISIGDGLRPGSIADANDEAQFAELRTLGELSRIADKHCVQVLIEGP GHVPMQRIKENMDLQLDLCNEAPFYTLGPLVTDIAPGYDHITSAIGGAMIAWRGTAMLCY VTRKEHLGLPNKDDVKEGVVTFKLAAHAADLAKGHPGAYYRDYAMSKARYEFRWKDQFHL ALDSETALQYHDETLPAEGHKEAHFCSMCGEHFCSMRASRQLQKRIEDDK >gi|228307672|gb|ACLR01000170.1| GENE 59 66866 - 67066 243 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470571|ref|ZP_04055428.1| ## NR: gi|228470571|ref|ZP_04055428.1| thiamine biosynthesis protein ThiS [Porphyromonas uenonis 60-3] # 1 66 1 66 66 112 100.0 9e-24 MQVTINKTPHDLPAGTSLLEAVSPVVATLDHTALAVNHRVIPRDAWATHQLCEGDAVTII TAAMGG >gi|228307672|gb|ACLR01000170.1| GENE 60 67703 - 70540 3972 945 aa, chain - ## HITS:1 COG:BB0536 KEGG:ns NR:ns ## COG: BB0536 COG0612 # Protein_GI_number: 15594881 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Borrelia burgdorferi # 27 935 24 924 933 285 26.0 2e-76 MNLKRMLSMAVVLLTMLLPRVAFAQDMSQPLPIDPQVRTGKLANGLTYFIRHNEQPKNRA EFYIAQRVGSILEEENQRGLAHFLEHMCFNGTKNFPDKTLISYLESNGMRFGYNLNAYTG IDETVYTLMEAPTERKGFIDSCLLILHDWSGFVTLADQEIDKERGVITEEWRSRDNAQMR MLNTALPKIYPNNRYGVRMPIGLMSVVNGFKYNELRDYYHKWYRPDLQAIIVVGDVDVDY VEKKIKEMFADIPAPVNAAERVYFPVEDNDAPLVAIEKDKEATSTNLMVMFKTDAMPVEM TRTIAGVMKNYLYGITNRIIDERFTDLMHKPNPAFTSANGYISNFFLAQTKDALTFDVTA REGELDVALKALMAEIERIRQYGFTQGEYERARTGLLKAYENSYNERETRKNSAYANEYK NYFTTGGYIPGIEMEKAIMEQVAKNIPLDVVNQMVQSLIGDKNMVLMLTAPDKKGLVLPT EAELVAKVNEYRKLPVEPIKDAVSDMKLMDKAPKAGKVTKREDNLKFGTTRLTLSNGMVV YLKTTDYKKNQISLTAVAPGGTNAYLKNAKDLPNIKNLSSVVALGGVGKFDNPTLSKALT GRSVSASGSMGGTRTYFSGISTLEDMETFFQLLYLRMTQPRQDADAFANWRTNMIEQIKN MESNPMVPFQDSLTYALYNNNPLMKRATIADIEAVNYDRVMKIWKERIADLGDLQLYFIG NVTPEQLIPYLEKYVASVPTKGRKHNMHKELVPAVRQGSMHIDFKKELATPMAMVMAAYT GKLPYTLHNELAMEVLGAVMDQVYTATVREDEGGTYGVSSGGSISDNPKGETVFQIFYQT DPEKVDRLNKIIYAELEKVAKNGPDKEMFDKTILNMKKDHAEDLKKNDYWLDHMVDFFFY GRDFQTDYEKTLNSIKPADVQKIAQELLKQNNLIEVIIRDAKKAK >gi|228307672|gb|ACLR01000170.1| GENE 61 70848 - 71099 115 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVSSPFFFKSTPVEHPPWEIGIIHGGVPNPPPRNKKNHRNFDFILPKFHFILPNFYFGPP WGIFVCSLEISEFLGREHNQPIC >gi|228307672|gb|ACLR01000170.1| GENE 62 71143 - 71754 825 203 aa, chain - ## HITS:1 COG:no KEGG:ZPR_4443 NR:ns ## KEGG: ZPR_4443 # Name: not_defined # Def: hypothetical protein # Organism: Z.profunda # Pathway: not_defined # 28 203 15 184 184 70 31.0 2e-11 MNNLLKKAFALCALVLATGYCLSAQVVVVQGEPEAPLPQTLNEVRLNLLAPVAFKAVSLE YERATTKVKDLGFGATISASFAQGEDYEASLFPAFGVMPYARWYFGGKKLSMTRLNSGFF IEANTAINYNRYTIRHYNPTNEQTTSENKRSTSWGIGLGGGWKFVSRSNWSGEISIRVGR NLVKGEDFDDVYVHPAISVGYRF >gi|228307672|gb|ACLR01000170.1| GENE 63 71918 - 72541 700 207 aa, chain + ## HITS:1 COG:no KEGG:PG0345 NR:ns ## KEGG: PG0345 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 14 192 3 197 197 87 27.0 2e-16 MKQDATATKQNSTKSYTWLIYLAAWLVIVLIQSILIGQSSTMAKSLFQAPSHYLSTWFLD IFLIAIFYLNYYYVAGHMMRRRHFGGYIAFVVVVAVVALFMPILCKALFGWRTPTQDLPF VTVSWSGAIGAVTVITIGLAVRALLEWLKLNKLTAEQREELIKLRNEVTSHKMQAKSDTI KPTTEITPTPAELAAQEPKPIAPAQPD >gi|228307672|gb|ACLR01000170.1| GENE 64 72538 - 73185 723 215 aa, chain - ## HITS:1 COG:aq_1507 KEGG:ns NR:ns ## COG: aq_1507 COG4122 # Protein_GI_number: 15606661 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Aquifex aeolicus # 4 211 8 210 212 141 34.0 7e-34 MDAELELYAQQHSSFGDPLLDELLRTAYVRLLQPRMVCGATQAGLLSMLIKLSSAKRVLE LGAYSGYSTIAMAIALEPVSGEIDSIECDAEMIHFLSPFVARSGCAERIHIHHGQALELM PALLAQHDYDLVYIDANKRQYPDYYQLLRKHLRPGAIILADNTLWDGKVTAPTTHHDLQL EGIQHFNALVAQDSGVEQLLLPLRDGLTIIRILSA >gi|228307672|gb|ACLR01000170.1| GENE 65 73206 - 73685 605 159 aa, chain - ## HITS:1 COG:AGc2456 KEGG:ns NR:ns ## COG: AGc2456 COG0757 # Protein_GI_number: 15888657 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 153 22 156 162 112 43.0 3e-25 MSTNSLIEPLSTPTTGKPAILILNGPNLIQVGQREAEIYGSTPLVPYLEQLANATTAVTI AIRYSHYEGALIEYLYMAQELGYQAVILNAGGYTHTSVAIADTIRAISLPVIEVHISQPL ARETYRHTSLIAPYCRGSIAGFGVASYDLAVRAALQLSR >gi|228307672|gb|ACLR01000170.1| GENE 66 73755 - 74684 1083 309 aa, chain + ## HITS:1 COG:BH1529 KEGG:ns NR:ns ## COG: BH1529 COG4974 # Protein_GI_number: 15614092 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus halodurans # 10 298 8 298 299 211 38.0 2e-54 MSLEPRQQLIQRYKTYLRLEQHLSDNSIDSYLYDVDKLYTYIGDMGLSLREVTLQHLNNF AAHLLDLGISMRSLARVLSGVKSFFRFLSLEEEIERDPTDMLQTPPIPKKLPEVLTLAEI DSLLGAIDEERPEASRDTAIIEVLYSCGLRVSELCGLTYSDVFLDEGYLHVWGKGRKERL VPMSPKAVSDVQRYLNDPCRYNAKPEYDQYIFISRRGQPISRITVFCLIRTLAELAGIHK EISPHTLRHSFATHLLEGGADLHAIQLMMGHESIATTEIYTHVDRTALRADILRYHPRNQ QHPTSHDAE >gi|228307672|gb|ACLR01000170.1| GENE 67 74769 - 75323 675 184 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470621|ref|ZP_04055478.1| ## NR: gi|228470621|ref|ZP_04055478.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 184 1 184 184 338 100.0 8e-92 MKRIALLIIAMLTLGFAAQAQSTFTKGTTTANIGLGIGSTLFDKDFSVLLPPLSVGIDHS VASGLFDGNGSIGVGGYLGAEVYRYKGFDSSVWSQTLVGPRGSLHYQFVDKLDTYFSLML GVNIISWNYNMKVADNAIKDKDTAAGFGWSAHIGARYYLSDRWAVMGELGYGLTFLTLGA TYRF >gi|228307672|gb|ACLR01000170.1| GENE 68 75351 - 77153 2112 600 aa, chain - ## HITS:1 COG:DR1198 KEGG:ns NR:ns ## COG: DR1198 COG1217 # Protein_GI_number: 15806217 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Deinococcus radiodurans # 3 595 2 593 593 634 53.0 0 MQELRNIAIIAHVDHGKTTLVDKMLLAAKLFREDKAAEVDTFLDNNDLERERGITIVSKN VSITYKGVKINVIDTPGHADFGGEVERVLNMADGCLLLVDAFEGPMPQTRFVLQKALAIG LKPIVVINKVDKPNCRPMEVQDMVFDLMASLEATDEQLDFVTLFGSAKQGWMSRDVEKPT EDITPLLDAIISEIPAPQQLDGPLQMLITSLDYSSYVGRIAVGRVHRGTIHNGDTVLLCH KDREPHREKVKELYTFEGIGKAKADSVSSGDICAIVGFDHFEIGDTIADPEHAEALDTIS VDEPTMSMLFTINNSPFYGREGKFVTSRHIHERLMRELDKNLALRVETTDQADSWNVFGR GVLHLSVLIETMRREGYELQVGQPQVIIKEIDGVKCEPIEELTINLPDETSSRIIDMVIQ RKGEMTAMESKNGRTHLVFTIPSRGIIGLNNSVLTASAGEAVIAHRFLEFGPWRGDIERR NNGSIIAGESGTAFAYALNNLQSRGRFFIAPQEEVYAGQVIGEHTKDNDLTVNVCKSKKL TNMRAAGSDDKVALAPPVVFSLEDALEYIKADEYVEVTPKSMRLRKILLNELDRKRANKA >gi|228307672|gb|ACLR01000170.1| GENE 69 77452 - 77958 582 168 aa, chain - ## HITS:1 COG:SA1586 KEGG:ns NR:ns ## COG: SA1586 COG0054 # Protein_GI_number: 15927342 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Staphylococcus aureus N315 # 27 168 14 154 154 124 44.0 1e-28 MSSQLHSQQTPAHYTLQHRHTADIRCIAVVYSEWNAEITHALRDGAVTTLLECGLERQQI ETFSVPGAFELTYTANLLSEATQPYDAIIIIGCVIRGETSHYDLICNSVTEGATELNLRG KAPVIFGLVTVENIEQARARSGGAVGNKGSECAIAALQMIDIRAMIQG >gi|228307672|gb|ACLR01000170.1| GENE 70 78132 - 78821 1249 229 aa, chain - ## HITS:1 COG:no KEGG:PG1430 NR:ns ## KEGG: PG1430 # Name: not_defined # Def: TPR domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 4 229 3 228 228 219 56.0 8e-56 MALKESGSQGSHHSEEIVSRSERFIEKYSKTIIWCVLGVIVLGVGIWLYIDKVVKPRGDK AAAELYLAEEQFMAGADSAALNAPAAGAMGLLAIADKYSSTDAGKLAHAYAGIIYYDEGK YEEAIRELKEFKAKEKMVAPSITRLIGDCYVELGKYDEAAKYFMDAAKAADNPVISPSCL IKAGHVYEELGQYDKALKAYKEIQEKYYTAPESESIEASIIRVEAKLKK >gi|228307672|gb|ACLR01000170.1| GENE 71 78933 - 79808 1202 291 aa, chain - ## HITS:1 COG:XF2443 KEGG:ns NR:ns ## COG: XF2443 COG0388 # Protein_GI_number: 15839034 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Xylella fastidiosa 9a5c # 1 291 6 295 295 380 61.0 1e-105 MKVGIIQQHNGADHTNNIHRLQERIRQLAHEGAELIVLQELHNGLYFCQTEDVALFDQAE TIPGPSTESFGALARELGVVIVLSLFEKRATGLYHNTAVVLERDGSIAGRYRKMHIPDDP AYYEKFYFTPGDLGFEPIDTSVGRLGILICWDQWYPEAARLMALKGAELLIYPTAIGTAA YDTPEEQQRQIDAWQLVQRGHAVANNLPVIAVNRVGFEPDPSGVTEGIQFWGHSFVTGQQ GEMLCDLSQTEEAGVVVELDLERTELVRRWWPYLRDRRIDSYGEITRRYID >gi|228307672|gb|ACLR01000170.1| GENE 72 79805 - 80854 939 349 aa, chain - ## HITS:1 COG:XF2442 KEGG:ns NR:ns ## COG: XF2442 COG2957 # Protein_GI_number: 15839033 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Xylella fastidiosa 9a5c # 4 339 28 361 363 211 38.0 2e-54 MLPEWAPQDAILLAWPHNQSDWAPILHEVQCTYCNIIEQVTRFEPVVLLVPEDPNEYASL PSELRSRCLLVPCPTNDTWCRDYGPLALQSPSGARVLVDFTFNAWGGKFVSALDNLVVRR LMMKELFALDVAYFEASSLTFEGGALECNGEGLLLTTKSCVEDPLRNPHLCETPYIYEAL LQCLGLTDYCSLEVAPLPGDDTDGHIDTIARFVDPDTIIYVSPSDPTAQSFVALTQLERQ LQELARQRPALRLIALPDVGDFPSRYEPDCLIPATYANFLLVNGALLLPIYGRSTDSEAQ RILQQALPHLEVVPIDCSILLEQHGSLHCISMQIPQGFLNPSLLNTITR >gi|228307672|gb|ACLR01000170.1| GENE 73 80891 - 81922 935 343 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470573|ref|ZP_04055430.1| ## NR: gi|228470573|ref|ZP_04055430.1| hypothetical protein PORUE0001_0872 [Porphyromonas uenonis 60-3] # 1 343 1 343 343 673 100.0 0 MRPIQYIQLASSALLITLLTACQTTIPLDLGDNTPRIVINAIATAQQGIDISLSQSKPTG VASPKVEVNYNYDHPDCPYRMTLQVNDQLVPISEVKQYKPQAGDRIAISVEKAGLKTASA TTTVPAQPTVGVIAVKKLDKTHRAPYAYNMPGRIDMPDGRYVEVQDYELSIPLQGITKDS YYRIIVEKQAVDPEREFQESPYAWSQEKIDDPRMTQFGNGDLIFESSRGRVMNLLAGSNV SASDCTLKTTLSFATRVCKADGSTDDERTAKGISEYVALRVTVYAITGDLYHYWQTVTAK RYNGLGNTGISEPNLIYNNIHDGLGILGSMATSLRQDLKIITR >gi|228307672|gb|ACLR01000170.1| GENE 74 81935 - 84355 2742 806 aa, chain - ## HITS:1 COG:no KEGG:BT_2172 NR:ns ## KEGG: BT_2172 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 28 806 109 897 897 650 42.0 0 MTYLRRYNFAVGLLALLLMMLATPLSGQAQKQAQRKYTVNGFVHDAQSGETLIAANVMEL NSRTGAVTNEFGHYSLTLPAGEVRLQFSYVGYQSDTIRLHLSSDTTLSASLIEGQLLGEV VVVGSPNPSGVETATIGAQHISASEIKRLPAFFGEQDVIKALQLLPGVQSGSEGSSGLFV RGGDPDQNLILMDGISLYNPNHMLGAFSTFNPDAVKSVTLYKGTFPARFGGRLSSVVDVR LKDGDMQEYHGNASIGLISSKINVEGPIVKDRTTFNFSARRTYLDLLAAMAFAIRNRQEG EDGEKMKGGYDFHDLNLKVTHRFSDRDQLYLFGYYGNDRVWTRYAHRDDKQQMSWLWGNA MGSLRWNHVINGQLFLNTTASYTQYRSRLRMKMQEDKDEPPVAMSYDSGIQDWLLTSELH YSPVEQHQLLFGANYTFHTFRPEMTSIKVNGKDLSDLTGTDFNVFGNNPKIYAHEASLYA EDEMKLGDKWTFNTGLRYSFYHVRGKGYHNIEPRVSAAWRITPALTAKVGYALMTQHVHL LTNNSLSLPTDLWVPSTDRIKPMHVHHFTAGLFLHVPQWGDFSVEGYYKPMSNVLEYKEG SFFYGVSTNWEQMVAMGRGTAYGLELLWQRKVGKLTGWVSYAWARTWRTFDQPGEELNFG RTFPAKYDRIHDFKITAMYQLGKSWDFAATWVFASGQTGTIATHEYDGLKDPLSWESVNG SLEYVAERNNYRFKPYHRLDLSITYTKHHKRGKSLWNLSVYNVYNQMNPFIVTPVSELGS DNSYRTVLRQVTIFPIMPNISYTYSF >gi|228307672|gb|ACLR01000170.1| GENE 75 84627 - 84836 143 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRTWIFSNRHVENENSPRSQEIKVRKNEIKVPRNLSVPPWRFSISYRGNWSFLRMKLEFL PHETGVSFA >gi|228307672|gb|ACLR01000170.1| GENE 76 84968 - 85504 499 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470565|ref|ZP_04055422.1| ## NR: gi|228470565|ref|ZP_04055422.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 178 1 178 178 315 100.0 9e-85 MDTNDLLKRQLDETAWREITDEFPWTLETLRKYGKKLDWEFVSSNPEILWTPEMLEEFEH WINWTRLSQTDCDTILTVDCLERFADYWDWDKLSENESIPLDYDTIDRFIDKWNWAALID HSHWRGADLGASHLYSYEFLERYASRIPANALEESQLWFTIKEQRKKELHRQIACGEA >gi|228307672|gb|ACLR01000170.1| GENE 77 85940 - 86179 272 79 aa, chain + ## HITS:1 COG:no KEGG:TDE1526 NR:ns ## KEGG: TDE1526 # Name: not_defined # Def: hypothetical protein # Organism: T.denticola # Pathway: not_defined # 1 76 1 75 80 78 51.0 7e-14 MSQMINRTKELIRISPKDPRVLEYSTNDGRVWTRRYKASSIQGDFEDLTDNGKEILATCE KGLFYSTNEGRVWTRRNSR >gi|228307672|gb|ACLR01000170.1| GENE 78 86266 - 87099 793 277 aa, chain + ## HITS:1 COG:BH1501 KEGG:ns NR:ns ## COG: BH1501 COG1226 # Protein_GI_number: 15614064 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Bacillus halodurans # 4 269 1 270 274 114 32.0 1e-25 MKLMKGSRLKRGNKSVAQLKKIVKLLRVLDWVADLVIISNVVCIVILLNNETSPQMTKWI EIFLDISLVVLFIELGVRMYYKRNFWRTPGDVFDLVVTTVCAVSFMPSLISLRTLRLVRL IRMLRIFSINKHMRLFSEAMVKSLPRVAWSSGFFGMTLLIYAIIGMDSYGATAPEYFGSL SRSLFTLFQVMSLESWASAVARPIMSVHPLAWLYFVSYILIASYILLSLVAGVITATTVE VYEHEESHKDILTAIKKLQKQVDELSKRLPSENDKKE >gi|228307672|gb|ACLR01000170.1| GENE 79 87177 - 88142 1024 321 aa, chain + ## HITS:1 COG:no KEGG:BT_2509 NR:ns ## KEGG: BT_2509 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 5 315 6 299 300 226 37.0 7e-58 MANKFGRYVWLIEQFRQYGRLTFEEISRHWVDSGLSYEEPLPKRTFHNHRAAILDIFQVD ILCDPQDGYRYYIDNPEELEQDNLRSWLIDSYTAMNQIQADSKLQGRILFEHVPSGRKWL NVIAEAMRHGKVIQMTYQAFGRPEAYSFEAEPYYLKVANRRWYLLARSPYYSARNEELNA EDGGSRPKDVYLVYALDRILACEPLEESFEMDETFDIEAYYRGCCGVIHSEEEPVRLLVN AYGQGADYLRTLPIHESQRELPSEVEGVACFELEVCPTYDLYQALLAMGDQIEVLEPQSV REEMYNFAKNLMAYYEPTSEA >gi|228307672|gb|ACLR01000170.1| GENE 80 88142 - 88711 509 189 aa, chain + ## HITS:1 COG:SA1710 KEGG:ns NR:ns ## COG: SA1710 COG0847 # Protein_GI_number: 15927468 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Staphylococcus aureus N315 # 6 178 6 174 184 114 39.0 9e-26 MNTLDFIAIDFETATGQRTSICEVGICLVRNGEIAETRSWLVQPEGNRYSYWNMQCHGIR PEDTKRAPSFAEVWQEIAEQYIGEGALLVAHNVPFDRSCLEQAAQLYELTLPELQWDCSL RRARQIYDYGCHTLAYLCEQLSIPEGRHHRAGDDAEMCARLYLRELHDSYESYTSVPNSK LFEIESDPL >gi|228307672|gb|ACLR01000170.1| GENE 81 88881 - 89792 994 303 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470606|ref|ZP_04055463.1| ## NR: gi|228470606|ref|ZP_04055463.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 303 32 334 334 611 100.0 1e-173 MTQKKLITLVTILICCMGLGACKEKDKPVEVKISIPEAVKLLVGETYKLEVNVYPKDLKV TFESTNTQVVTVCEKGVLKAIAEGEAEVKATAGNVTKVCKVSVTKPNNIDKSRYLGLDAS AEDQQYFAPIYIPKEEDFKPDKLDLFKSAVTPFGWIYEADAKDPEGKLFYRFVSPNKKDE NGKEIDTKSQFCMDFLAYNHSMPGAPVYIRMGLYRHFAMDYLVKPETFTEPKDLKVQKEL LKIMEHYGFTEDAQFTVLGRDNAYVAYNTKFDPKTPLRGVMFTEREEDHPGFRLTFQISY GRR >gi|228307672|gb|ACLR01000170.1| GENE 82 89959 - 91512 372 517 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 213 506 2 297 306 147 32 1e-34 MRLDQDTLQQLQSIFASLKHRYTLRAKAPEGDHYGELEQLLGDFASTSPQISLEMGVGDK LSVEILRDDQPTGITFRAIPSGHEFSSLILAIYNADGQGKNLPDAAICDKIRSLRKPIHL RSYISLSCTNCPDVVQSLNLITLIAGEGVTHEMVDGALYTEEAKELNISAVPTVYLGDQV LHIGKSSLGELLGKLADAVGVEPSSVTAERKEYDQIVIGGGPAGAAAALYSARKGLHVAL VADRMGGQVNETTAIENVPSVLHTTGTQLAEDLRQHVLHYHVEILEQRHVEQIKLVDTQK EVVTSLGETLVAPQVIIATGASWRKLGVPGEAEHIGRGVAFCPHCDGPFFKGQDIAVVGG GNSGIEAAIDLAGICKHVTVLEFMESLKADTVLQEQLAKLPNVTVHTNVATEEVIGNGNK VSALRIAPRDGSAPFELAVAGVFVQIGLKANTDVFDGLVERNRMGEIVIDDHCRSSVPGI YAAGDCASIPYKQVVIAMGEGAKAALSAFDDRIRTQG >gi|228307672|gb|ACLR01000170.1| GENE 83 91509 - 91760 191 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470618|ref|ZP_04055475.1| ## NR: gi|228470618|ref|ZP_04055475.1| hypothetical protein PORUE0001_0880 [Porphyromonas uenonis 60-3] # 21 83 1 63 63 99 100.0 5e-20 MHKGESLCCFRDSASVTYVGMLPSDLTLSALRFILSAKSRQSCKQDCEAVDFATVSHIKT RGLCRILTRAAQPSTLSKKTAQS >gi|228307672|gb|ACLR01000170.1| GENE 84 91783 - 92364 935 193 aa, chain - ## HITS:1 COG:FN1983 KEGG:ns NR:ns ## COG: FN1983 COG0450 # Protein_GI_number: 19705279 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Fusobacterium nucleatum # 8 193 3 188 188 231 59.0 4e-61 MQMTMQPIINSNLPEFKVPAYTKSKGFHEVSNEDLKGRWSVLFFYPGDFTFVCPTELADL ADNYAEFQQIGVDIYSVSTDSHFVHKAWQDASEAVKKVQYTMLADMRFELARAFGVMIEE AGQAYRGTFLIDPDGKVRVAEIHDNGIGRDAQELLRKVRAAQFIYEHPGEVCPAKWRQGD ATLKPSIDLVGKI Prediction of potential genes in microbial genomes Time: Fri May 27 09:48:10 2011 Seq name: gi|228307630|gb|ACLR01000171.1| Porphyromonas uenonis 60-3 ctg1118640599767, whole genome shotgun sequence Length of sequence - 49497 bp Number of predicted genes - 49, with homology - 41 Number of transcription units - 29, operones - 12 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 59 - 118 3.8 1 1 Tu 1 . + CDS 239 - 1054 325 ## PG1490 TraG family protein + Term 1270 - 1320 4.3 + Prom 1440 - 1499 3.4 2 2 Tu 1 . + CDS 1521 - 1805 129 ## - Term 1692 - 1720 -1.0 3 3 Op 1 . - CDS 1828 - 2040 197 ## 4 3 Op 2 . - CDS 2043 - 2414 461 ## - Prom 2500 - 2559 4.7 5 4 Op 1 . - CDS 2595 - 3179 123 ## COG3209 Rhs family protein 6 4 Op 2 . - CDS 3183 - 3704 36 ## gi|288929483|ref|ZP_06423327.1| hypothetical protein HMPREF0670_02221 7 5 Op 1 . - CDS 3818 - 4093 203 ## gi|270339706|ref|ZP_06005749.2| conserved hypothetical protein 8 5 Op 2 . - CDS 4101 - 4370 197 ## gi|261879321|ref|ZP_06005748.1| conserved hypothetical protein + Prom 4563 - 4622 9.1 9 6 Op 1 . + CDS 4696 - 6102 1409 ## PG1494 hypothetical protein 10 6 Op 2 . + CDS 6124 - 8196 955 ## COG0550 Topoisomerase IA + Term 8364 - 8400 1.5 11 7 Op 1 . + CDS 8675 - 9463 576 ## COG0827 Adenine-specific DNA methylase 12 7 Op 2 . + CDS 9473 - 9898 284 ## PGN_0086 putative DNA methylase 13 7 Op 3 . + CDS 9957 - 11570 1216 ## COG4646 DNA methylase + Term 11596 - 11631 0.1 + Prom 11596 - 11655 3.3 14 8 Op 1 . + CDS 11828 - 13081 741 ## BT_2446 integrase 15 8 Op 2 . + CDS 13094 - 14377 560 ## COG4974 Site-specific recombinase XerD 16 8 Op 3 . + CDS 14433 - 14918 195 ## PG0816 hypothetical protein + Term 15005 - 15052 11.0 17 9 Op 1 . + CDS 15582 - 15851 276 ## BF1983 hypothetical protein 18 9 Op 2 . + CDS 15872 - 16186 271 ## BT_1930 hypothetical protein 19 9 Op 3 . + CDS 16174 - 16683 330 ## BDI_3249 hypothetical protein + Term 16709 - 16766 2.2 + Prom 16710 - 16769 3.7 20 10 Tu 1 . + CDS 16876 - 17295 109 ## PG1488 hypothetical protein - Term 17684 - 17723 -0.5 21 11 Tu 1 . - CDS 17768 - 18718 342 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase + Prom 18816 - 18875 4.0 22 12 Tu 1 . + CDS 19112 - 19291 111 ## + Term 19305 - 19339 -0.7 23 13 Tu 1 . - CDS 19731 - 20969 781 ## BF2098 hypothetical protein - Prom 21141 - 21200 3.7 24 14 Op 1 . + CDS 22212 - 22835 108 ## PRU_1109 hypothetical protein 25 14 Op 2 . + CDS 22832 - 23857 427 ## Sfum_0218 hypothetical protein 26 15 Tu 1 . - CDS 24637 - 24840 58 ## - Prom 24926 - 24985 3.7 27 16 Tu 1 . + CDS 25450 - 26217 124 ## COG0480 Translation elongation factors (GTPases) 28 17 Tu 1 . - CDS 26551 - 26754 132 ## PG1488 hypothetical protein 29 18 Tu 1 . + CDS 26842 - 27084 156 ## + Term 27140 - 27191 12.0 30 19 Tu 1 . - CDS 27537 - 27833 219 ## BDI_0745 hypothetical protein - Prom 27926 - 27985 3.9 + Prom 28295 - 28354 4.3 31 20 Tu 1 . + CDS 28576 - 28800 64 ## - Term 28590 - 28638 10.2 32 21 Op 1 . - CDS 28718 - 29989 962 ## BF1987 tyrosine type site-specific recombinase 33 21 Op 2 . - CDS 29994 - 31214 527 ## COG4973 Site-specific recombinase XerC + Prom 31448 - 31507 4.2 34 22 Tu 1 . + CDS 31542 - 33002 961 ## COG4646 DNA methylase + Term 33088 - 33129 3.0 - Term 33075 - 33116 6.0 35 23 Tu 1 . - CDS 33204 - 34106 391 ## COG4823 Abortive infection bacteriophage resistance protein - Prom 34239 - 34298 3.8 36 24 Tu 1 . - CDS 34511 - 35011 215 ## COG2826 Transposase and inactivated derivatives, IS30 family 37 25 Tu 1 . + CDS 35081 - 35806 354 ## Dfer_4026 transposase IS204/IS1001/IS1096/IS1165 family protein + Prom 36393 - 36452 6.4 38 26 Op 1 2/0.000 + CDS 36660 - 38402 588 ## COG3593 Predicted ATP-dependent endonuclease of the OLD family 39 26 Op 2 . + CDS 38387 - 40039 434 ## COG0210 Superfamily I DNA and RNA helicases + Term 40215 - 40242 -0.9 40 27 Op 1 . - CDS 40441 - 40749 284 ## PG0850 excisionase family DNA-binding protein 41 27 Op 2 . - CDS 40737 - 42821 968 ## PG1533 toprim domain-containing protein 42 27 Op 3 . - CDS 42818 - 43213 166 ## PG1534 hypothetical protein 43 27 Op 4 . - CDS 43200 - 43391 129 ## - Term 44210 - 44257 0.0 44 28 Op 1 . - CDS 44350 - 45339 1048 ## COG0530 Ca2+/Na+ antiporter 45 28 Op 2 8/0.000 - CDS 45369 - 46661 1300 ## COG1512 Beta-propeller domains of methanol dehydrogenase type - Prom 46688 - 46747 1.6 46 28 Op 3 . - CDS 46766 - 47386 997 ## COG1704 Uncharacterized conserved protein 47 28 Op 4 19/0.000 - CDS 47422 - 47907 751 ## COG1781 Aspartate carbamoyltransferase, regulatory subunit 48 28 Op 5 . - CDS 47921 - 48838 927 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 48922 - 48981 4.5 + Prom 48888 - 48947 3.5 49 29 Tu 1 . + CDS 49088 - 49496 312 ## gi|228470639|ref|ZP_04055495.1| transposase family protein Predicted protein(s) >gi|228307630|gb|ACLR01000171.1| GENE 1 239 - 1054 325 271 aa, chain + ## HITS:1 COG:no KEGG:PG1490 NR:ns ## KEGG: PG1490 # Name: not_defined # Def: TraG family protein # Organism: P.gingivalis # Pathway: not_defined # 1 271 397 667 669 478 87.0 1e-133 MISPALYWVMTGDDFSLDINNPNEPKVLVVGNNPDRQNIYSAALGLYNSRIVKLINKKHQ LKSSVIIDELPTIYFRGLDNLIATARSNKVAVCLGFQDFSQLTRDYGDKESKVIQNTVGN VFSGQVVGETAKTLSERFGKVLQQRQSMTINRNDKSTSISTQMDSLIPASKISNLTQGMF VGAVSDNFDERIDQKIFHAEIVVDSTKISAEMKTYQPIPMIVDFKNKDGSDNLKETIEAN YRKVKQEILLLVDSEMERVKNDPLLSHLIKQ >gi|228307630|gb|ACLR01000171.1| GENE 2 1521 - 1805 129 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVCLGLNLVFFYLSLLIVPLTWCPLVQGHVAVPQPAGDANGILAQSSSECVIGEQGIKG KISPSGRSDLLQRSVLVPDIPPAFGLAVPPFREL >gi|228307630|gb|ACLR01000171.1| GENE 3 1828 - 2040 197 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCLSNECLLELLDYIDSQMTFRPCKGDLSITIDFLRKIGRRDIEGTVSWLKEYGGYCDCE VLANMDIEEL >gi|228307630|gb|ACLR01000171.1| GENE 4 2043 - 2414 461 123 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNGLNIEEFMNLPYGKRFSYTISRIKENQTIWSFKRKSGKFSMNIGINDIPELLVWSDEN FAYYNLTKEWSNEKVVSISVEEFEKELYPKLLAGNYNILVATMEYKRGKVISAQNFLNLI RKD >gi|228307630|gb|ACLR01000171.1| GENE 5 2595 - 3179 123 194 aa, chain - ## HITS:1 COG:YPO3615 KEGG:ns NR:ns ## COG: YPO3615 COG3209 # Protein_GI_number: 16123757 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Yersinia pestis # 22 176 1251 1402 1512 98 36.0 9e-21 MSKQICNEQGEIEENQKNLRTWLFEEESFVPLALFQDGKAYSIVTDHLGTPVEAYNEQGE EVWYRRLDMNGKVIEVRSMLYTSYKDYIKIPFLFQGQYYDEEIKLAYNKFRYYDPQMGRY ISEDPIRFASGTIALFSYVSDTNGCLDLLGLSYSPGRKGRQERLKSLLNDDKLPKHVKGW IRQEINAINRKHKK >gi|228307630|gb|ACLR01000171.1| GENE 6 3183 - 3704 36 173 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|288929483|ref|ZP_06423327.1| ## NR: gi|288929483|ref|ZP_06423327.1| hypothetical protein HMPREF0670_02221 [Prevotella sp. oral taxon 317 str. F0108] # 1 172 43 213 221 239 66.0 6e-62 MDFDFVFCFRVLYTTRGIRSKVRFEKDSNYLGMDLIMPEDEFRPYKKNVSMQRATMGRHF FPFFAENIKKYKYKLPSLQPFIGDLIEDMRLFLIENLWLPAEDGKLKLSIIETVSYERAM ELFGNPKQKVFSENEEGQKVQDLVWTVEEGTKLSAKYILTDKKWNLQNYEVSY >gi|228307630|gb|ACLR01000171.1| GENE 7 3818 - 4093 203 91 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|270339706|ref|ZP_06005749.2| ## NR: gi|270339706|ref|ZP_06005749.2| conserved hypothetical protein [Prevotella bergensis DSM 17361] # 22 91 1 70 103 113 94.0 5e-24 MSSPSTSHGYFESDSTQLSLSVGSSFEGVAGNSSANASQGISADVSAVDTGMKAGMALAE ARNEHAIVSFRYDNMWLPVEERSNEHVIKRT >gi|228307630|gb|ACLR01000171.1| GENE 8 4101 - 4370 197 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|261879321|ref|ZP_06005748.1| ## NR: gi|261879321|ref|ZP_06005748.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] # 1 89 1 89 89 132 96.0 8e-30 MEQLNDFFGKLFAYLREHPQYGLLVAILLVILYLIGLIFDWKWTLLPSGNSDFTQMWIDL FGRNAVRFMKGVLAVLLLLALVYLYYHYK >gi|228307630|gb|ACLR01000171.1| GENE 9 4696 - 6102 1409 468 aa, chain + ## HITS:1 COG:no KEGG:PG1494 NR:ns ## KEGG: PG1494 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 34 468 1 437 437 471 58.0 1e-131 MEANSNDNYVLVLEDRTEVKNQHEAGKLTIVSGIDDKGKLKTTEPLEANQAAFLKFNSKD GLLKNFMTNFLKQFNNPSHFGLYKVVANNVEQGVDNLRTLLQSRETPESRQQLAEVGVPF EDYLPQQKKSTAIDAEKVDWKMLDSLGLSRERLEQSGELEKMLNWQKSNLVTIAIPIGDT TIYTEARLAFRTDNEGNIGLAIHAMRKEPQLDYPYMGYKFSPEEKEQLLTTGNLGKTIEV TPKSGEPFAAYVSIDPQTNEIIALRADHVSIPQEIKGVTLSDQQYKDLVEGKAVKVEGMT AKSGKSFDATLQVNAEKKGIEFIFGENKSLKERQEQRQDRQQDKAPRKLCGLELSEKQRE ALDNGRTLYLKNMIDKEGQPFNAYVRMDKEQNRPRFYKWNPDKKQGTGKVEAVAEEHKTQ VAVNNHGKTNEATKQVKEPLKKGQTEPTAEQKQKQDENKQKKSRGRKM >gi|228307630|gb|ACLR01000171.1| GENE 10 6124 - 8196 955 690 aa, chain + ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 5 667 6 691 709 416 38.0 1e-115 MTTCIIAEKPSVARDIARIVGATTKQDGYLAGNGYLVTWAMGHLITLAMPEAYGYSKYKA EELPICPNPFQLIVRQVRKDKEYHEDPAALKQLKAIGSCFNQADRIIVATDAGREGELIF RWIYRHLNSHKPFDRLWISSLTDKAIREGLANIKPGSHYDHLYYAAQARAEADWLMGINA SRALSIAYRGGYSLGRVQTPTLAMVCHRYMEHRDFTSVPYWKLTATIEDEGLSIKAVSLQ NFDNEAAAQTALTSLRSLGSLTVTEVTRKVTHTAPPLLYDLTALQKEANVRHGFSADKTL TLAQSLYEKKFTTYPRTGSRYISEDVFEEVPDLLRKIGTPLPQELNRHSVDDSKVTDHHA IIPTGETASVLSVDETTLYQMIVTRFAEAFSAHSEEERMQVVLKDETNSYVWKACRQVSL GWKSVQSATPQEHKESEEDEPILSSLPNLTEGQTLPLQQADIIEQKSKPKPLYTEATLLS AMEHAGKEVEDIASKKALAECGIGTPATRANIIETLILRDYIRREKKSIVPTEKGLAVYE IVKDKRIANAEMTGAWEVALAAIEAGSMDAGKFAQGINSYVSTICEELLSLAPASRQQRY PTYHCPKCGRESVGIYAKVARCKNDDCDFHIFREVCGTYLSDENIRDLITKGRTPILKGL TSKAGKKFNARLVLQEDGSTKFEFEQKRKK >gi|228307630|gb|ACLR01000171.1| GENE 11 8675 - 9463 576 262 aa, chain + ## HITS:1 COG:pli0004 KEGG:ns NR:ns ## COG: pli0004 COG0827 # Protein_GI_number: 18450290 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Listeria innocua # 6 255 417 633 756 100 29.0 2e-21 MAYNKKAVLAANAEAIRVVLRLEKEHRPATEAEKRILRGYQGFGGLKCVLNRTDTPADIR YWSKSEEELFAPTQQFKQMIYREAVDAHTAKRYWESIKASVLTSFYTDRRIVSAISDALA TSGVTLKRCLDPSSGMGAFAETFAKQVGLVDALEKDLLTARISQALHPYGEGNIFVRNEP FEAIAPLEETEKYDLVTSNIPFGDFMVYDREYSRGNDLFKKESTRAIHNYFFVKGLDCTR EGGLVAFITSQGVLDAALNEPI >gi|228307630|gb|ACLR01000171.1| GENE 12 9473 - 9898 284 141 aa, chain + ## HITS:1 COG:no KEGG:PGN_0086 NR:ns ## KEGG: PGN_0086 # Name: not_defined # Def: putative DNA methylase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 139 266 393 1828 92 40.0 6e-18 MQNSRLISAIRLPSGMFSEQAGTEVGSDLIVLQKQSGKEIGEELEKQFVQTVAVPKGDGF TMAFNHNSLFEGSWNDVAPRTIATSRELGRDPYGKPTWEYRFEGTMEELAESLRIQLTQD VAARFDRKLYETGIAMSEEGE >gi|228307630|gb|ACLR01000171.1| GENE 13 9957 - 11570 1216 537 aa, chain + ## HITS:1 COG:jhp0928_2 KEGG:ns NR:ns ## COG: jhp0928_2 COG4646 # Protein_GI_number: 15611993 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Helicobacter pylori J99 # 1 532 385 924 1502 216 29.0 1e-55 MADKFISGNVIEKSEQIESWLLEHPDHEEAQQSLAALRAATPTPIPFAELDFNLGERWIP AKVYRAFASEFFETEITVTYQSTMDEYVLQCDRRNGNIWHKYAVQGEFRRYDGLNLLKHA LHNTIPDINKNKEVRDLEAGETKTIKVRDGHAIQMANAKIEEIRQGFVDWLGRTLESFKQ QLSDRYNKLFNCFVRPNFDGAHQSFPDLNLKGLGITDLYKSQKDAVWMLNANGGGICDHE VGAGKTLIMCTAAYEMKRLGLANKPMIIGLKANVFDIADTFRKAYPNARVLYPGKNDFNK QNRQRIFNDIKNNDWDCIILTHEQFGMIPQALEIQEAILQKEKDSIEENLEVLRQQGADI SRAMLKGLERRKQTLEAKLQGIQDSIAERKDNAVDFKMMGIDHLFVDESHQFKNLMFNTR HDRVSGLGNPEGSQRALNMLFAIRTIQERSGKDLGATFLSGTTISNSLTELYLLFKYLRP QALEKQGINSFDAWAAVFAKKSTDYEFSITNDIIQKERFRTFIKVPELAAFYAEVWE >gi|228307630|gb|ACLR01000171.1| GENE 14 11828 - 13081 741 417 aa, chain + ## HITS:1 COG:no KEGG:BT_2446 NR:ns ## KEGG: BT_2446 # Name: not_defined # Def: integrase # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 407 1 399 409 279 36.0 1e-73 MEKEKFKLLFYLKRGTQDKNGKSPIMGRISAGRSMVQFSCKCSCTPRLWDSRKNRLLGKS AEAVSVNKELDRLQVSIHKVYESLSGKSDAPITAERVRELVFGLNSESQGLLHHTDEYID RFRERVGIDRSERRLKCLLLFHKHLANFVRYRYRVEDIPVQKADIAFIKDLEDYFAKEKG FKLNTSAGYLSMLASLLKDLHKRHIIDTYPFINHSIRWEVGTPRYITREEVGLIAALGED KLQGYEKVSRDMFLFSCLTGLSYTDVYHLTEQHVFHEAGMTWIRKPRIKTGNVCHIPLLP EATAIIERYRGIHTRAFRHEPPKGYLLPIPGCDTVNIHLKKIARLCGIQKTLTYHMARHT FASQMTLSEGVSIESVSKMLGHSQIKTTQVYAETSPERVFLDIEKILPQLAHYQLTN >gi|228307630|gb|ACLR01000171.1| GENE 15 13094 - 14377 560 427 aa, chain + ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 126 396 16 295 297 72 27.0 2e-12 MKSTFAILFYIDRSKTNEDGLCVIRCRITCNGTSSSFSTQLQTSPDEWLARKGCIKATTG NSSGINLQLNSIEECLHSLYERTLREENYITAEYLKERYMQQSRPMPTLTELYQSVCEYK EELQGRTLSKATVRAFKDSYKSFVHFLQVRDRADCMPTEVDKTLLEDYRLFMLRDLGNKE SSVGNRLRHLHQVIRKALQERYVREDPFELIDIETPTYERNALTADDLQKLLAYRPHRST DNHCRLIFLLGCFTGLAFSDLKKLRMDDVYTFGDGRRYISLCRTKTQNRSIVPLLPVAEK ILAIVSHGRREGLFFREFPSNSNFNRTIQEICIKAGLPPHTQATSHTARHTFATTICLEN GLPIETVSKMLGHRFISTTEIYARVTKSKIAKEMQPLMGSEHTRVLRKALRLCPSRTPKK SSPIIGM >gi|228307630|gb|ACLR01000171.1| GENE 16 14433 - 14918 195 161 aa, chain + ## HITS:1 COG:no KEGG:PG0816 NR:ns ## KEGG: PG0816 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 150 1 150 157 200 69.0 1e-50 MKQKNKKELSYFRLKLRSYMSEHHPEKLQDTEFITARADMALTVYCDAVAQGFTHIEAES MASEALYQGLHFSKYDTLISVLENEFERELPAPLPEKLVPILLSNKAVQATFDKFGLTDT LASDEQYGRLYTELTGTIVLLIESNNLPTVRLTEEASLKAL >gi|228307630|gb|ACLR01000171.1| GENE 17 15582 - 15851 276 89 aa, chain + ## HITS:1 COG:no KEGG:BF1983 NR:ns ## KEGG: BF1983 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 88 1 90 94 77 42.0 2e-13 MKLIIIDRKAWERHRSEFADFIHRVEKLIGNPPKTEQWLDNEAVCKRLGISKRTLQSYRD TGKIPFSMIGHKCYYKQTDICEMLNAVKD >gi|228307630|gb|ACLR01000171.1| GENE 18 15872 - 16186 271 104 aa, chain + ## HITS:1 COG:no KEGG:BT_1930 NR:ns ## KEGG: BT_1930 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 6 96 4 94 97 82 42.0 3e-15 MAENEIITREDPQMQLFSQLMEGTLKKLERYCSTARPMLNGEVYLSGEEVCSQLRLSTRT LQEYRNSGTLPFYKIGGKILYKQSDIQAMLEKHYNPIPKKLWQE >gi|228307630|gb|ACLR01000171.1| GENE 19 16174 - 16683 330 169 aa, chain + ## HITS:1 COG:no KEGG:BDI_3249 NR:ns ## KEGG: BDI_3249 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 98 169 96 167 167 62 47.0 4e-09 MARIDEKRKQRLEQAIRDMGNYGVKLRKPEELPDFDQPFDYEEEKRRFEPVDKVEEQNDK ESNKDFSQPSYQETALSPTERATSTEEFHQRMGKTKDRKQLSEFQGKYLQPFRNSHRKAV YVSEETQRKLDFVVRRIGEHGASVSGYVEQVLREHLDQYKEDVERWRKL >gi|228307630|gb|ACLR01000171.1| GENE 20 16876 - 17295 109 139 aa, chain + ## HITS:1 COG:no KEGG:PG1488 NR:ns ## KEGG: PG1488 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 8 137 2 129 133 93 41.0 2e-18 MKKQKQKKPDGRCATCPRWDRWHIRIPNSEDQQKLIRLYRKSGAKTKSDFVRARLLGESF KVITQDPAKEPYLEKLSEIVALAHKIGVLYNEVVKVLNTYHSVATAQQLLGKLETYSQIL IRLQQQAVQLTKSFGSREE >gi|228307630|gb|ACLR01000171.1| GENE 21 17768 - 18718 342 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 12 301 29 312 317 136 32 3e-31 MQFSMMLQIPMSKKAIAEAIGVDKSTVYREIKRNCDARSGSYSMELAQRKADRRKQQKHR KEVLTPAMRKRIIKLLKKGFSPEQIVGRSRLEGIAMVSHETIYRWIWEDKRRGGKLHKYL RRQGRRYAKRGSKNAGRGFIPGRVDIDERPEIVELKERFGDLEIDTIIGKNHKGAILTIN DRATSRVWIRKLSGKEAIPVAKIAVWALRKVKNLIHTITADNGKEFAKHEEIAQKLEIKF YFCKPYHSWERGANENTDGLIRQYIPKGKDFSEVTNKQIKWIENKLNNRPRKRLGYLTPN EKFKQIINQNSVAFAS >gi|228307630|gb|ACLR01000171.1| GENE 22 19112 - 19291 111 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLLLKTTQLWLNIYENYFLMPEMFKLSVVILGILQFRNFLSKWCQIFLMALLPIFSKS >gi|228307630|gb|ACLR01000171.1| GENE 23 19731 - 20969 781 412 aa, chain - ## HITS:1 COG:no KEGG:BF2098 NR:ns ## KEGG: BF2098 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 403 162 597 922 189 30.0 2e-46 MEYDKANRQLSFKGKPLNGVNINGETFMGNDIIAALENMPTDAVELLKLYDMLSALEKMT GVDDGADNYVLDIKTKSTYNGSLTGTLTAEHGNRDRRRDEVQGNLFNADGENTSLTLRSD NLSNMNIGGNNFQNILSGNIVKKFGKKITLNASLSLNAFHNGSENHDYDEQYLSSGTKYR ESMLLSLSKNHSNAANINLQYNIDKKTLLNISANGNFGRSDNLTDNTTYLYERNTAADTL TSGTLRNNTKSNGKNYHVSADLTRRIGKAGASFTVKATLGGNSNETNNTSLSLTKFHHLR NAVGGDSLLLRNLCQQLPTLRNESRISLQYTHPFGKQLKLQTGYGLHHEEDRNTSNTYDY TIPNRPYIDSLSYENTLSICGQELTLRMDYKGKQWKINSGIDVDHPTLNYEG >gi|228307630|gb|ACLR01000171.1| GENE 24 22212 - 22835 108 207 aa, chain + ## HITS:1 COG:no KEGG:PRU_1109 NR:ns ## KEGG: PRU_1109 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 12 207 3 197 201 134 39.0 3e-30 MGKQLKSTHQLIKEAVIDSGEGSILYPNQFAPCGDSTAIRQVLSRMTKEGYLVRLAHGLY YYPKVDTKWGTGIIYPSIEEVARIIEERDKITLIPSGTYVLNKLGLSTQIPMNVVYITNG SPRTIKLGKGRGIQLKRSNDMNNFAYTSELVRMLVFALREIGQGNLTEVHKSILKKHLRS ISEEEYKRDIHLAPQWIQDELNRLREQ >gi|228307630|gb|ACLR01000171.1| GENE 25 22832 - 23857 427 341 aa, chain + ## HITS:1 COG:no KEGG:Sfum_0218 NR:ns ## KEGG: Sfum_0218 # Name: not_defined # Def: hypothetical protein # Organism: S.fumaroxidans # Pathway: not_defined # 3 334 4 331 331 205 37.0 3e-51 MIFTDLSKEEQREVLEIVRPRIGDIPLSVIEKDWWVTMVLRALFSLHYADQLSFKGGTSL SKCWNLIKRFSEDIDIAINREYLGFAGQLSKTQISDKLRRASCSFTREMLKTDLEKALAS LSIDPSLFEVSVNVTSISTTDPEVIEVAYESLFSEETDYLKPVVKIEVSGRSMSEPLESV MTNSWIEQYMPNTPFVQKEFKVLAVSPERTFIEKLCLLHEEFAKKEFSSIRSERMSRHLY DVYKISKTEIATRALSDPTLYASIVQHRSMFIGLKGFDYRTLAPQKLSIVPPKEVLDEWR SDYVAMSQDMIYEETPSFDSLLNEITELNKSINKIAWTLSL >gi|228307630|gb|ACLR01000171.1| GENE 26 24637 - 24840 58 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVAYKFFVFFLYICLGANRINRSIDNSLHKQDILRQICFYIHIQTLQIHTGTVNLIDKYN CRDLQLL >gi|228307630|gb|ACLR01000171.1| GENE 27 25450 - 26217 124 255 aa, chain + ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 3 226 396 619 652 189 42.0 4e-48 MEISLYGLTQKEIIQTLLEERFSVKVHFDEIKTIYKERPIKKVNKIIQIEVPPNPYWATI GLTLEPLPLGAGLQIESDISYGYLNHSFQNAVFEGIRMSCQSGLHGWEVTDLKVTFTQAE YYSPVSTPADFRQLTPYVFRLALQQSGVDILEPMLCFELQIPQVASSKAITDLQKLMSEI EDISCNNEWCHIKGKVPLNTSKDYASEVSSYTKGLGIFMVKPCGYQITKDGYSDNIRMNE KDKLLFMFQKSMSLK >gi|228307630|gb|ACLR01000171.1| GENE 28 26551 - 26754 132 67 aa, chain - ## HITS:1 COG:no KEGG:PG1488 NR:ns ## KEGG: PG1488 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 2 67 63 128 133 73 54.0 2e-12 MEYYRKLSELTAQIHKIGVLYNQAVRAINSYHSVKTAQILLEKLEQLSAQIIALQEQAIS LTIDYRK >gi|228307630|gb|ACLR01000171.1| GENE 29 26842 - 27084 156 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQLNRPLPGLSGQASVRASCPSEAYSALFAYDLFLSARSSVVSSVNYDFGVIHLPFGAR VFVLQTAVCVTKTHLANIKN >gi|228307630|gb|ACLR01000171.1| GENE 30 27537 - 27833 219 98 aa, chain - ## HITS:1 COG:no KEGG:BDI_0745 NR:ns ## KEGG: BDI_0745 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 4 96 2 94 97 80 43.0 1e-14 MSENEIITQQDPQMQMFAQLMESVLKKLKRYCATARPMLGGEVYLTSEEVCKLLRLSSRT LQEYRDSGTIAYYKIGGKILYKQSDIQAMLERHYKSYI >gi|228307630|gb|ACLR01000171.1| GENE 31 28576 - 28800 64 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIVPKYREKPCGGDFSLHPQDLTLQAIKATAIPLPDRIWLQVFEESSPTKVQIAFCLAVL LTHNNPQRQNALCQ >gi|228307630|gb|ACLR01000171.1| GENE 32 28718 - 29989 962 423 aa, chain - ## HITS:1 COG:no KEGG:BF1987 NR:ns ## KEGG: BF1987 # Name: not_defined # Def: tyrosine type site-specific recombinase # Organism: B.fragilis # Pathway: not_defined # 4 408 12 415 435 268 36.0 3e-70 MARSTFKTLFYINRSKEKKNGKCPIMGRITIDGKQVQYSTGKEIAPELWDSRKGRCKGTG EEIKEINRYLQAKEEQAKAKYQELVWQRGYITAELLKCELMEEDKPKGFLLEEAHLFIED KHPCVGVTVAKPTFANYIYATQLIEAYLRERLGLEDIRYSLLDYGFIEGMDFYLKSERNL SLATIQIVVIFLRKLIGIGQQKKYIRIDPFVDYKAELPHRTRRYLTTEELQRVLQTPIID RQFERARQLFLFCAFTGLARVDMQRIRLKHIIRNADGTEEIRIKRQKTDVEAIIPLLPIA KQILSFYIKDKKVDDLIFPNLTTRKASLACVNIGQICRIEKGLTFHMARHTFSTTICLSN GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTDREHSAFEGYCESIAQQDKTQS EPL >gi|228307630|gb|ACLR01000171.1| GENE 33 29994 - 31214 527 406 aa, chain - ## HITS:1 COG:STM3949 KEGG:ns NR:ns ## COG: STM3949 COG4973 # Protein_GI_number: 16767219 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerC # Organism: Salmonella typhimurium LT2 # 110 379 6 277 300 68 26.0 2e-11 MKENKLKVSFFVQARRTDKKGLVPVIGRISVGRTHSGFSTKCKTPISLWDSRKQRLTGKS AMAVSVNQKLGECTALIHARFHELSEREETFTATDVRDAYQGQIHRQALLLQSFEEYLRQ TKERIGIDRALKTFKLRTYQLSLLREYLQKKYKVSDIPLSQLDKAFIEGFEYYLSIDRKL KRSSVSSALSTLKSIVRMAVKKGVLDFYPFLGYSYERPKGEPRSISQDQLQRIIDLEIEW ENYRIVRDLFVFSCFAGLAISDVRNLREENIVLEEGELCIKGKRMKTKTPYRVQVLPPAW AIMERYRGKRAGFVFDVPTNDIIHNGMHYIQRNIGMESPLTFHMARHTFASLITLSAGVP IETVSQMLGHTNLRTTQVYAAVSSERIHREMQNVQQRIQDTFTLKL >gi|228307630|gb|ACLR01000171.1| GENE 34 31542 - 33002 961 486 aa, chain + ## HITS:1 COG:AGpT188_2 KEGG:ns NR:ns ## COG: AGpT188_2 COG4646 # Protein_GI_number: 16119916 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 14 270 900 1150 1315 128 31.0 2e-29 MIDLEKYSDHIDNKASHCAKLLNNYYQKYNEQKGTQFVFSDLGTYKPGEWNVYSEIKRKL VEEYHIPSHEIRFIQECKNEKAKKAMVEAMNRGDIRIIFGSTSMLGTGVNAQQRAVAIHH LDTPWRPSDLEQRNGRAIRKGNLVAKEFADNKVDVVIYAVERSLDSYKFNLLHNKQLFIN QLKSNQLGMRTIDEGSMDEDSGMNFSEYVAVLSGNTDLLEKAKLDKKITALESERKNFLR ERNGAVGKLAEIDHSLSYHTGKIQEAKKDLACFEQRVERDAEGNPVNRLSIKGVEHCSDI KVIAHRLQEIEEKARTNGEYNKIGELYGFSVMVKTESSSQNLFDLSVNRFFVKGEGSIYY TYNNGKLANDPKLACLNFFNALERIPKVIESHEKEIAKVSANKEVYTAIANSSWKKEEDL RSLKAQAAELDRKIALTLSPPEEEEEEKEMKEQEYGQTTAQEVTTQEMKQKTEPTTPQHT PKPKWR >gi|228307630|gb|ACLR01000171.1| GENE 35 33204 - 34106 391 300 aa, chain - ## HITS:1 COG:PM1540 KEGG:ns NR:ns ## COG: PM1540 COG4823 # Protein_GI_number: 15603405 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Pasteurella multocida # 4 220 3 229 309 70 25.0 5e-12 MGKTAIDVWEQIELLESRGMVIKDKEKAQEVLLDVGYYRLGFYWFPFETTYPNKINRTHQ FREGTNFDYIVKLYYFDFNLRSILMKYLNRIEIHFRTFLIYKVSNYYRTSPTWFADPNIV TAAYVRKFDQEVYTNRFKSISIIQQHHKTHINDKYAPAWKTLEYMTLGGIIHLFKALKDQ MIRRAISEHFKVRQLPVFERYLKAILTIRNYCAHGNVLYDIALPTSIRRGPAGQMESANY HKLYGAIKVIYYMTGIVSVNRQADLKEELIKLFDKNEKYNEVQNIIAEATGIKNIREMLA >gi|228307630|gb|ACLR01000171.1| GENE 36 34511 - 35011 215 166 aa, chain - ## HITS:1 COG:NMA0768 KEGG:ns NR:ns ## COG: NMA0768 COG2826 # Protein_GI_number: 15793743 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS30 family # Organism: Neisseria meningitidis Z2491 # 5 166 109 270 321 71 32.0 7e-13 MARKTTLYTYLHLNKKNKGSLYLCCRHALRRRKQRLVAPTKWEKRKSISQRPICIDQQLR EDDLEMGPTDGSNNKGAILTITDRKTGYLIMENPKHGKDAKQLPMVVNRRLAFLKRRGQI FSITIDNGAEFTHFKSIEPALKILVFFAKPYCSSDKPHIENMNGLI >gi|228307630|gb|ACLR01000171.1| GENE 37 35081 - 35806 354 241 aa, chain + ## HITS:1 COG:no KEGG:Dfer_4026 NR:ns ## KEGG: Dfer_4026 # Name: not_defined # Def: transposase IS204/IS1001/IS1096/IS1165 family protein # Organism: D.fermentans # Pathway: not_defined # 2 192 7 190 281 98 37.0 2e-19 MGSTICIDEKNINGDCYSIVSNPETNKIVLMVNTLRASQIVYLMRSNISQEALFAVSCVT RNMAPNYDWVARELFPNAYQVADKFHVVKNIIDQVQSVRISYRQELLRKQRELEEASRKQ PKLLPDPKLQRELKNLKKELSNGDTQLQLLQRSKGLLHKLPTEHTASQKLRARLLFRLFP DIKEAYKFSVALRKWYQRPMRDGTSITPSRHLLERKKKALLEIITHHLSSPCEEVKNIAH S >gi|228307630|gb|ACLR01000171.1| GENE 38 36660 - 38402 588 580 aa, chain + ## HITS:1 COG:MA2139 KEGG:ns NR:ns ## COG: MA2139 COG3593 # Protein_GI_number: 20090982 # Func_class: L Replication, recombination and repair # Function: Predicted ATP-dependent endonuclease of the OLD family # Organism: Methanosarcina acetivorans str.C2A # 10 578 116 680 689 344 35.0 3e-94 MMTDPELSEEAELRYEFKLTDAEEDNYKSDVANATTAKEIWKIIDHDYIRLYRTSRLGGN QAAGISINETLMQIDFQFLDAIRDVSHDLYAGYNPLLRDVLNFFIDYSVKNDSTKTEDEI KGQLKTLRDGFVQQSSPLMQTLQDRLQNGKNVFLKYALDTGATFNGAVPDFDGTVTENEM FAVLRMIIKYADGIEVPATYNGLGYNNLIYMSLLLARMQADSSITYMKRNAKILSFLAVE ECEAHLHPAMQYKFLQFLQDNNANGHVRQIFITSHSTQIASAVKLDDLICLTSPALGQIN VGYPRDIYKEDNDDVESKRYVQRFLDATKADMFFANKLIFVEGIAEELLLPVFARYLDKN LTDEHVLVINMGGRYFKHFLKLFDTNNPHTINKKIVCLTDIDPCRKKHGSDEAYEACYPY EYNIDADNYDYKHHADTEVIQYADHPNIRFYRQDVTYGKTLEYDIMRENPDCELLLTDSV SNLKEIKAMMAEEDVNEMMNKMRTSETNSRIKTSIGASEWTDEEKRKALLASRYLNSVSK GSNALELNVALMANLEKSATDRKEFNVPRYIVDALTWLLS >gi|228307630|gb|ACLR01000171.1| GENE 39 38387 - 40039 434 550 aa, chain + ## HITS:1 COG:MA2140 KEGG:ns NR:ns ## COG: MA2140 COG0210 # Protein_GI_number: 20090983 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Methanosarcina acetivorans str.C2A # 2 548 6 584 612 265 32.0 2e-70 MAIIITSEQTIPVDEPFKVTAGPGAGKTHWLISHIKNVVSNSNKLDVVRKVACITYTNVG IDTITSRLNMRNDVVEVCTIHSFLYANIVKPYIHLVAKEFGLELSKLVVIDDSNFKTEGI AISVLKLINKSWVNARSYLKGLNNATWHYSKHAYNDYKPRYPIKAGKWFVGNDCYMGFKR WLWSRGYMSFDDILYFSYILLSRYPHIYKLIKARYPYIFVDEFQDTIPFVVDFLTQLGNK GVIVGVVGDKAQSIYDFLGATVQQFDSFTVPEMQEYEIRGNRRSTKQIIDLLNIVRTDFS QDWLNGLEGMMPELLVGDMLNCYQQSIEKSGTDEIQSLAFQNVLANSMRKKNGVREVEKI LEIDFDSNAGRQMIIKTLIKAVEYTKMNDLRNAWHQLDIINRDRTITIVALRRLLDGYKD YKDGSLMDFYNFLVNDLQLKITKITGKAIKDFYVNHTYADAVLGVKYGDSNDKHKTIHKS KGEEFDNVFVILEKEEDLEFLLSPNLDGNNVHRVYYVAASRAIKRLFICVPTLSEENYIK LKDMPINIPS >gi|228307630|gb|ACLR01000171.1| GENE 40 40441 - 40749 284 102 aa, chain - ## HITS:1 COG:no KEGG:PG0850 NR:ns ## KEGG: PG0850 # Name: not_defined # Def: excisionase family DNA-binding protein # Organism: P.gingivalis # Pathway: not_defined # 1 102 1 102 102 143 75.0 2e-33 MSYLDYLTEDPWQKRLFDKLASVEEKLDHLLVLREQDIEVAVKPPLKPEYLDIIDVSRLL KVEQKTIYNWVWAGKIPYLKANGRLLFLREEIDEMLKRREEW >gi|228307630|gb|ACLR01000171.1| GENE 41 40737 - 42821 968 694 aa, chain - ## HITS:1 COG:no KEGG:PG1533 NR:ns ## KEGG: PG1533 # Name: not_defined # Def: toprim domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 3 686 4 678 682 815 59.0 0 MTLKEEILQLTNRGLEVFYFYMPIDFVPKRNFRNPLYDDKRASCNIYFDPKSDSYRMKDF GNEAYSGDCFWFAATILGLDVRSEFKKVLVTIIQDLNLKISIEYRGDTNMKAARSTYPRQ SVEQSQKRCTESMDKVEYIANKKSFRVYERPFTQKELAFWEQYGISLETLEQYHVKSLSC YESVSREGKPFKLISSSEEPIFCYAHNDFVKIYRPNSKLRFLYGGEKSEEYVFGLAQLPN KGDILFITGGEKDVLSLSAHHFNAICFNSETAQIPRGIIESLSLRFLHLIILYDSDETGI REAQKQVEALSEFGVLRLQLPLSGIKTEKDISDYFALGHSQQDLRDLLARMFSSLYSETM MILQSCEIDYDNPPDVSKSVVSVNGVPLGSQDNLFCITGGEGTGKSNYIGSILAGTLCAE RLDSERTLGLEITPNPKALAVLHYDTEQSEAQLYKNLGKTLRRADVETVPDFYHSLYLAS LSRKDRLKLIRESMDLFRHKHGGIHLVVIDGIADLVRSANDETESIAVVDELYRLAGIYN TCIICVLHFVPNGIKLRGHIGSELQRKSAGILSIEKDDNPEYSVVKALKVRDGSPLDVPM MLFGWDKELGMHVYRGEKSKEDKEKRKTDELISIVTEIFQSNRRLSYQELCDVLMREMGV KERTAKKYIAYMREQRILSQDTAGNYQKGKLCHT >gi|228307630|gb|ACLR01000171.1| GENE 42 42818 - 43213 166 131 aa, chain - ## HITS:1 COG:no KEGG:PG1534 NR:ns ## KEGG: PG1534 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 10 118 14 119 129 91 42.0 1e-17 METYNPSTLLDEIQGLREEVRQVADFIKELKREYSVLEEKIELNSSDVMRLLGISKASLA RWRDANAVPYRYVSCNHVLYPFKGLYIAVKSGRVTFKGFRRIEALQRLNAYKDGILKGYL GEDAQNLFEEL >gi|228307630|gb|ACLR01000171.1| GENE 43 43200 - 43391 129 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVQKEDLLRILRHFHPLEIDDTLSNIERLIEIFLKETEHELLKKLLPLLAETFQTLAESY GDV >gi|228307630|gb|ACLR01000171.1| GENE 44 44350 - 45339 1048 329 aa, chain - ## HITS:1 COG:BH0465 KEGG:ns NR:ns ## COG: BH0465 COG0530 # Protein_GI_number: 15613028 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/Na+ antiporter # Organism: Bacillus halodurans # 20 325 16 315 318 197 41.0 2e-50 MSILLYFLLLILGLVMITAGANYLTNGSVTIAERLGVSQLVIGLTIVGFGTSAPELVVSL TSALANKPDIAIANVVGSNIANILLILGVSAVIYPLRVTHDAMKRDIPIAMLVTAICLVM ASDHLLTGGFSGNIIDRGDGIILLGFLIFYLYLAFMSAPKEKTLEADQPPLEAKSAKPTM LLSIVKVIGGLALLIFGGRLFVDNASSIARSWGVSEAIIGLTIVAIGTSLPELATSVVAA VKRQPDLAIGNVVGSSIFNILFILGASATITPLVPAGIQLMDYMMMLVAVFLLFIFSNVM GRAMISRKEGVALLIVYVAYMTYLIVEAL >gi|228307630|gb|ACLR01000171.1| GENE 45 45369 - 46661 1300 430 aa, chain - ## HITS:1 COG:BMEI0229 KEGG:ns NR:ns ## COG: BMEI0229 COG1512 # Protein_GI_number: 17986513 # Func_class: R General function prediction only # Function: Beta-propeller domains of methanol dehydrogenase type # Organism: Brucella melitensis # 6 208 1 194 253 100 30.0 5e-21 MKRTLLFLGLLLSFWALPAQKALSWEDIPNVQLQDSTQFVSDVAHIIEPEALQRINETLQ SLRQTHGVEGVVITLPTIGNGGSIEELALGILRGWGVGSKVDNSGFVMLISLDSRQIRIE TGYGLEGVLPDALCSQIIAHRMAPHFKRGDYSTGILSGVQAIQETISANYEGATRTDGSE EDQVAEGVFNGLVVLLVLILCVVMLASYRDKQTAPEQRTKRLNRQIVSFVFIALIAMIGG SFLFIASAIVVLLALYAILRYRLSQEALRCATCHQNKLQRLSSTDKLSLLTPAQQLEERL GSVYYLVKQCDNCGAVERYGEVVGGSPYKRCPHCGTYAMQRVGTQRLRSTDRRIAYINRE EYHCLYCDQDHHKDDTVYRDDGSGFVTGAIIGSILGGSFGRGGGGFSGGGFGGGGFGGGS GGGGGATGGW >gi|228307630|gb|ACLR01000171.1| GENE 46 46766 - 47386 997 206 aa, chain - ## HITS:1 COG:PM0785 KEGG:ns NR:ns ## COG: PM0785 COG1704 # Protein_GI_number: 15602650 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pasteurella multocida # 18 206 5 192 193 187 54.0 1e-47 MTDQTTAPKSRRGLTLTIIVVAVVLLLVFWGVGQYNSLVVLDEQVNTSWSQVENQYQRRA DLIPNLVETVKGYASHERETLEGVINARAKASQPIIQAGDGMTQEQLNQFQQAQGDLTSA LNRLMVVVERYPELKADENFRQLQAQLEGTENRITTARMDFNNEAQQYNTKVRRFPTNIF AGLFGFHQRPYFQTEAGAEQAPQVKF >gi|228307630|gb|ACLR01000171.1| GENE 47 47422 - 47907 751 161 aa, chain - ## HITS:1 COG:PAB1499 KEGG:ns NR:ns ## COG: PAB1499 COG1781 # Protein_GI_number: 14521525 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Pyrococcus abyssi # 16 158 4 148 152 126 46.0 1e-29 MNAKSQKALIKQQEGMMVTAICNGTVIDHIPPSKLFKIAHLLQLEDMEEPITIGNNLDSR YLGKKGIIKISGRMLSDEEASRIALLAPDVHVNIIKDYEVVEKRTLHLPEEIIGFVKCPN AKCITNNEPVRTHFHLIDAEHEVLRCHYCGRKVSEERIELL >gi|228307630|gb|ACLR01000171.1| GENE 48 47921 - 48838 927 305 aa, chain - ## HITS:1 COG:NMA0168 KEGG:ns NR:ns ## COG: NMA0168 COG0540 # Protein_GI_number: 15793195 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Neisseria meningitidis Z2491 # 3 303 8 306 306 298 52.0 1e-80 MMKHIVSIEQCAEQDILRILDRAALFEANPNRHLMDGMVGATLFFEPSTRTRLSFETAVN RLGGRVIGFSDPKSSSSTKGESLKDTLLIVSNYADVIIMRHYLEGAALYATEVSPVPIVN AGDGANQHPSQTLLDLYTIRSTQGTLKDLHIVMVGDLRFGRTIHSLIEGMRFFSPRFTFV APPELRLPEEYRQYCDEHHLRYEETSLFTPEVIADADILYMTRVQRERFTDMEEYERVKD VYILNKEMLQGTKDNLRILHPLPRVNEIDIDVDSSPKAEYFRQAQNGLYIRQSILCEVLG IEVDK >gi|228307630|gb|ACLR01000171.1| GENE 49 49088 - 49496 312 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470639|ref|ZP_04055495.1| ## NR: gi|228470639|ref|ZP_04055495.1| transposase family protein [Porphyromonas uenonis 60-3] # 1 136 1 136 137 239 100.0 5e-62 MKQEKSNRGRKGYPLDFKWRVIDGLLATGESIATTSQRYGITARTIRNWLRTFGVELPNQ STMSKTNKNKAVDPDYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKDR FVAVRQLESAQVRDQK Prediction of potential genes in microbial genomes Time: Fri May 27 09:50:19 2011 Seq name: gi|228307622|gb|ACLR01000172.1| Porphyromonas uenonis 60-3 deg1118640599709, whole genome shotgun sequence Length of sequence - 780 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 44 - 394 402 ## gi|228469589|ref|ZP_04054581.1| transposase Orf2 + Term 488 - 531 4.0 Predicted protein(s) >gi|228307622|gb|ACLR01000172.1| GENE 1 44 - 394 402 116 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469589|ref|ZP_04054581.1| ## NR: gi|228469589|ref|ZP_04054581.1| transposase Orf2 [Porphyromonas uenonis 60-3] # 1 116 89 204 204 209 100.0 5e-53 MAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTARPHRALNKKTPMQMLIPDYPN PLTTQPSKKQISKNNSPKAPSLKAPSPCRLTPNKELSLCTSAVKTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 09:50:25 2011 Seq name: gi|228307620|gb|ACLR01000173.1| Porphyromonas uenonis 60-3 deg1118640599528, whole genome shotgun sequence Length of sequence - 566 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:50:29 2011 Seq name: gi|228307610|gb|ACLR01000174.1| Porphyromonas uenonis 60-3 ctg1118640599681, whole genome shotgun sequence Length of sequence - 14967 bp Number of predicted genes - 7, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 246 - 455 210 ## + Prom 503 - 562 3.0 2 2 Op 1 . + CDS 779 - 2002 1552 ## PG1019 putative lipoprotein 3 2 Op 2 . + CDS 2098 - 4923 2707 ## PG1020 hypothetical protein 4 2 Op 3 . + CDS 4930 - 6603 1451 ## PG1022 hypothetical protein 5 2 Op 4 . + CDS 6670 - 8238 1344 ## COG4886 Leucine-rich repeat (LRR) protein + Term 8293 - 8350 4.0 6 3 Op 1 . + CDS 8494 - 11424 1933 ## CPS_3882 leucine-rich repeat-containing protein 7 3 Op 2 . + CDS 11474 - 14966 4085 ## LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat) Predicted protein(s) >gi|228307610|gb|ACLR01000174.1| GENE 1 246 - 455 210 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKKLQFHAHENPVSSVGNRKSLPRNGQILRNFEIFLPKFHFILPNFYIQPPWGMFVFQR FICRFLREN >gi|228307610|gb|ACLR01000174.1| GENE 2 779 - 2002 1552 407 aa, chain + ## HITS:1 COG:no KEGG:PG1019 NR:ns ## KEGG: PG1019 # Name: not_defined # Def: putative lipoprotein # Organism: P.gingivalis # Pathway: not_defined # 10 407 9 392 393 292 41.0 2e-77 MRITKVTSVTLVLIALSALILGGCKEDPNNPDPNKGTQCKVTVQLGLDKEVELAKLMLTV TDSRTLKKSETEVDKKSRTVELTLDKGTYSFAVSGETVDHRTLVGGKENVVISDAMTLSI PVQIGEAPTSEKSQLIFGDIFFNGETNGRMMHPDQYFMIVNNGEKTEYLDGVCYAVTAQA NPMPETPWTKYLADKEELPVRGIYQFPGSGKEYPIKPGEFKIVAATAINHHTEDKPNSVD LSGADFEFLYPDVELPAGDGKTIKITDTDNPDVPNMNIVVDCFSSTGIAHPRGFLPPLLF KVEGDLSAFLKDHVMQVTNKKGETENYYTIPVDLILDGVETGCEGQFKTRALPITVDKGN FYVTGCHRQQLAHRKTEMRNGRTHWIDTNDSTNDYERVQGQKAYPKK >gi|228307610|gb|ACLR01000174.1| GENE 3 2098 - 4923 2707 941 aa, chain + ## HITS:1 COG:no KEGG:PG1020 NR:ns ## KEGG: PG1020 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 38 938 38 933 936 852 46.0 0 MAMLHRHTLLTLITLWLLLLPELSFAMSYTTPPPAIGITGRVRNAKDHAPIGWATVGISE TNQGVVCDADGRFTLPLRQGGTYTLIVRCVGFAPYSRTLSVQGLEQVDIPLRRLSIELPE VEVLGAYRKDKSEVVIGQEAMQNIQPVSIKDILLLLPGAVTTTPGIGDFKGVTNRQVGQD DNSSLGTSIMIDGAPITNDASRVQMQGLTGMSRFSTYLPDKAVTKRSSLNSGIDLRTLST NHYDRVEVEQGISSASEGNLSSGAIKLHPKRGVTPWEGRAKVDPLFKLAYIGKGIALGST GYNSLHIGGDVVDYRSDPRERLERYTRATAQLSYAYHRDLGDTGGGGVLDVTATLHQTAS IQNSRTDELVEQQDERYNTEYYRTTLVANARWSPQLSWLRTLSWRSTVDYTYDLLSRKYL YLSGRGPAVMPISREMGLQEGEFLPTSYYAYYKMDNQPLALQTTLSAESPMAWLAPLQQT LLYGVDYSIAKNWGRGAVIDPSRPPYPGDNTFIWVRPNYAIPALSNIAAFLEDRLFVSLG SHRIDGNVGLRATQMLNLPHNYRLAHEILLDPRIKLSWTYTAPSGFATAVRLGYGVAHKL PTLDYLYPDNVYRYFSALNAYYSDPKRDHLMTYAIKHDPSNPNLRAMSNEKKEIGIDLSY QRYTLAVTLFQEDMNSGYAYAPAYYPITYPTYRRPIGGSLPAGKRPVKEDFYEDLYQDFT SLSTVQNSERTVKRGVEYRLRTPYFKAIRTQFELNGAYYHTLYASAIPVMYRPEIIEFDV KYPYVGIYGKGDHRHYHRVNTNLWATTHIPEWGVILTNFFQVIWFSKSYYGREQSPYPYE LMDLNGRKLPVGEKEIAQMNDLSSPMRYLNRSLDELYYRANIKPISVRMSFKGTKQLGEH IRLSFFIDNIIDISPKYLQKDKTTAREWVVPYFGLETSVKF >gi|228307610|gb|ACLR01000174.1| GENE 4 4930 - 6603 1451 557 aa, chain + ## HITS:1 COG:no KEGG:PG1022 NR:ns ## KEGG: PG1022 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 77 555 19 491 493 223 32.0 2e-56 MYLHAFTHSSLSIRSFALCLLMLGYVAAKAQMPASPFIIGQGEVYSSALQRYYEEITPRV EDKLAKVRYTIPMEIPQDTTYALVGLRSNYLSQDGVRAPYEGATETAGELLAMGVANFKH RGRLSGYVSVGLGYQGAIGYSAIRQPEYYLPYLVADTSGGAYRYEHYIAGALYALRRGAS ELGAGLHFAGEIAYKYEDPRVYNTTGTLQATLGYKHHFSSLDLSATLHALYHRKYMNLWL WRPSQQDKFPLTYGFGMVDVQNTKIFFGTSRMHYMGGVAVDLLLRSRQRELGAPHYTLLL SDQLYKMRTEESSAAGLFGLLNNSVRLLSSAGWGRCTLALESSILHRLGTEYIYATHQPD QEHLTITDLRQIGQRQTYQQADYDAQLRGRYQIPLSSRHQLALSLGGGYHYHQELYKGSS NHIDYSVVRPWAGCDYRYSDRLYTALSVAYRLPLSSTYVVERGYKDQLDYQLAYLPLLSK LKSGLELRWHSQLTIPLPRSQAMTISVDAFYAPNRLTPRRPLYEGRPTTSSGIFSHPELI GEQARSYGLLLSLTYHI >gi|228307610|gb|ACLR01000174.1| GENE 5 6670 - 8238 1344 522 aa, chain + ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 80 192 125 237 292 62 31.0 2e-09 MHKYILYFVILLLPLTSFAQQREAIKITTDKKIGETITLNIIANGDISIEGLKGIYDPAE DVSYEVLSQEITFTGPITDFNANGCGITDIDLSRALSLEWLAINDNKIRKLNLYYCDYLA QLQCANNLIKELDLTLNEQLQQVFVDNNYLKQLDLSNCPQLSTLNCSGNMISTLDFADCP FLNQLFIYSNRFMAEGIDSLIAHLPNLTPNAQRGSIVVLSKVDPYEQNTITQEHIDQLQA KGWTVKCRTSSDIYQSYDKSLPIDRSDLSFTTFYPEIELGEPISFTVRVKEGTELLMRGV KGEWRNGERIQYILDKPAITVRGAIEEIIADSCKISALFLDQLPIATRLSFAGNQVEEMC FRIMPRLRSFICSQGHLSEVLVQQIVDGLLMIPEAESPAILGIYDDSVRPETNQMRPKQV AEAKAKRWQPSQWDASSHTWIPYEGNHRACEAPLQTEHYRCYVEGAGVWIRGEELPSKTL TIYTLDGTQLLQTTLTHTDSYIPLSKGVYILRIGSSSCKLII >gi|228307610|gb|ACLR01000174.1| GENE 6 8494 - 11424 1933 976 aa, chain + ## HITS:1 COG:no KEGG:CPS_3882 NR:ns ## KEGG: CPS_3882 # Name: not_defined # Def: leucine-rich repeat-containing protein # Organism: C.psychrerythraea # Pathway: not_defined # 416 825 172 582 816 95 25.0 8e-18 MNILKHLFFLASLGIATCATAQSTAESITITPTGQYSELTGYISGEQLWIDLNGNRTLDS GEAVQSGKKMVKALQNNHFPLTIYGKTITELILQNSETPDQIKAIDLTAAHSLTKLNLRG NPIVGELSLQSCPSIAEVNLRETMLEVINATACYSLTHLYASDSPKLHSLLLSDCNRLSW LEADRCALQNPILKGAISLSSIHLDDNELTELNIPMACSNLKVVSVSNNPNLKELSIRAL ATVTGLYASRCGLTAIDLSRGALLESVDLSCNELRELTLHVNQTRLKELRIYQNDFSLER MKQLVSTLPADDKSREEKRLIAINTQGITPREANVCSKSVVSLANSLGWDVYDYHGGVEQ LYAGSSDPKIDPTKEGFIITTQQQRGGELSLDLKGSNLFIDLNGNNLCDPGESLQVGHNR ITLSERNIVTIYGSDITEVRIPNGQLKGVDLAQAPHIESLDLSHNLLEFVDLSAQQQLKE LDLSHNHLRSLLLPSRAPMNKLTLAFNQISSIELPAYHDLQELWLSNNRLTSFNLLALKS LQELHVEVNKIDLIAMRELVSQLPTKATSETKCKLYAVDTTAPDEGNHISKSMVTSARSK GWSVYNGQTANYEGEPDQKLGEHAERIAITVSSEDPTLLSFFPKGEDCWVDLNGNDSYDP GEEIDASTGRKHQIRVVSKQTFTLYGRQITELRINDQAHVSKVDASEAHSIELLWVRDND LSEIILPKGKTLKNLDLSNNKLSGDIDLRPYTALEKLFLVTNAYQSVAVSGLQQLKVLSL SENKLSTIDLTGCDNLQELYLASNQFASVDCSHLHKLETLSVFRNQIKRQAMQQLIDGLN DIAPSSKIRGKIFNVSYVTRDGQPSLEEHNELTPEQIKLAEQKQWTVNGWKEGGGVIVIT ALQECATPSEDALTWYPIESGWVVAPQHLDGTTILSVFSPEGTLIYRGLANQILEIHTPL HKALLVYGDQRYLLIR >gi|228307610|gb|ACLR01000174.1| GENE 7 11474 - 14966 4085 1164 aa, chain + ## HITS:1 COG:no KEGG:LLO_3002 NR:ns ## KEGG: LLO_3002 # Name: not_defined # Def: transmembrane protein (fibronectin III domain and GP5 C-terminal repeat) # Organism: L.longbeachae # Pathway: not_defined # 42 1150 1227 2168 3329 175 25.0 1e-41 MTKRILYPIVFALLLLLGGWGSKASGQSSGATYAVRYTLPKGVSDLRCVTYLPSEGKVVV TSGRKIPAGTQLTFTATVEAGYEIDHWTVNGELAQHEPEAYGGAKIMEMEMPEEDIDVVI VMKEPETPTDECTVRLTPSTPDGGMLSAYYLERNPFTGEEDATYIDDGDRVPKNTQLKAT AVPNSGYTIGQWYQDGVAIEGSKGRESVSVVVRGNTEIKVDFESSGQSFEGVVFTFQEDT PEGTITAYYEDDNFNHKAFHSGDKVPMGKMAFFTATPKAGYEFDYWTLNGEKSRFLMIVD EHTCKLSAEDNDTIGAVFKSTAPAGHKITLTAGEGGTLQCFLSTGPEVQSGSTVDDGVAL RFTAKPMKGYKTDQWTINGEPFAKGKGKNTIIQKADKPLNVEVSFLKDIQLYTVEYAAEA GGTIKSATYYDRTTYNYVDFQSGKELPKDSEVDIEVEPKAGYVVDLWYLNDQPIDASKGK TSQTIKISGNSKIRITFATKPKQTVTYTASTGGTIQGTLQGTAFDSGSKLDEGSYIIFTA TPSKGYEVDQWRIDGEVIARYAGKKEIQERLGNKPLKVEVSFKKIPVTFPVVFTAGEGGT IVATVAEGSAHKSISSGDAIVQYSRVTFTAKPKSGYLVDQWTVNDQPQQFFAGKPELTRS VRETLKVHVTFKEDKPAKLCTINYTKENEWGTLVAYYDTQASGRINVKPGDKVEEGYMIT FLATPKEGYTIDHWTYNGTKTSTVKPEMLTVKATEDMTVAVVCNKAKLCTVTFDAVSEGG KMTASYLKDEGLNGYKDVYINSGDQVPAGTEVTFVVTLTEGYTLEHWLVNNTKKACDKYS PNRLRELVINEDTEVKAVYKAPQKPQHAVTFTAGEGGAIAATVGTEAKAIQSKDQVEQGA VITFTATPKEGYELDHWMVNGKPAVAGADTKIEGNKLIVTLGDQDLKVEATFKKLPVTYE VTYSAGEGGDIVGANYNGRKVIPSGSKVNENVSMRFTAKPNTAQGYKVDQWFINGQVQNQ LTGRPFIFWQIKAKTEVKVTFRKEQMYEVDYKPDNEWGTIEAYYYDGGRKVTVEPKAKVK EGTFVEFQATVKEGYALDGWTNNGHEIPVADIETLKASLTLRANAVIDVKYHKLVVKHAV TFTAGEGGTIVATVGTEAKAIESK Prediction of potential genes in microbial genomes Time: Fri May 27 09:51:18 2011 Seq name: gi|228307605|gb|ACLR01000175.1| Porphyromonas uenonis 60-3 ctg1118640599560, whole genome shotgun sequence Length of sequence - 2117 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 551 847 ## COG0457 FOG: TPR repeat + Term 577 - 622 7.2 - Term 488 - 523 1.0 2 2 Tu 1 . - CDS 590 - 814 197 ## gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 - Prom 951 - 1010 2.1 + Prom 841 - 900 2.6 3 3 Tu 1 . + CDS 966 - 2115 1402 ## COG0457 FOG: TPR repeat Predicted protein(s) >gi|228307605|gb|ACLR01000175.1| GENE 1 3 - 551 847 182 aa, chain + ## HITS:1 COG:mlr3120 KEGG:ns NR:ns ## COG: mlr3120 COG0457 # Protein_GI_number: 13472730 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Mesorhizobium loti # 8 140 63 195 280 58 28.0 7e-09 NKYVSLVPDDADGYYQRAQIKSKSQDLQGAIDDYSKTIELSDTYLWAYLKRADRYTALGR KDAATADYRKVIEILQEHDATDIAMAYAYQSLGEQEQAIAAIAKCIEEAPDDAELYYSIS GVYGRMGKTEQALDNLRIALEKGYKDLIYIEDDTDIAALRDNPQYKALIQQYKEKLGYKK PQ >gi|228307605|gb|ACLR01000175.1| GENE 2 590 - 814 197 74 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470674|ref|ZP_04055526.1| ## NR: gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 [Porphyromonas uenonis 60-3] # 25 74 1 50 50 93 100.0 4e-18 MLRLLHKGESLCCFRDSASVTYGCMLPSDLTLSALRFILSAKSGQSCKQDCETVDFCNSL MVTRGHKKATWRDL >gi|228307605|gb|ACLR01000175.1| GENE 3 966 - 2115 1402 383 aa, chain + ## HITS:1 COG:FN1787 KEGG:ns NR:ns ## COG: FN1787 COG0457 # Protein_GI_number: 19705092 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Fusobacterium nucleatum # 70 383 52 330 628 92 26.0 1e-18 MKRIMALLLSLLCLATTLSAQVQDTTALSAQDLPTLERTFDTFSPDLQDTLGIIMSEPED QTAFLEHVQKALQSEPNNGVAWAYVATIYRMQGKTEQALEAATKAITFLQAKPARRAMVY SLRSDIYTDLEDGVKALMDLHSAIKDAPDTPNLYLKRGNLYAAMGQYDLAEVDMRKIASL DPKNPIGYIGLAVIAMQQERYEDAIQNLNETIKLEPNEGFLYYLRANVYIKLEHYNEAMD DIIYTIANGIANEDTYSLLNVIAAQAMPTLESKLKALESMSKTGEYLFLIGLAHQNIGDN KGALEYYQQVTERQELDDVVASHIATAYQGIGDYSSALKYIDEAISLDPTDYTYIYTKAQ MLSEDGNLRRALAESNKYVSLVP Prediction of potential genes in microbial genomes Time: Fri May 27 09:53:41 2011 Seq name: gi|228307534|gb|ACLR01000176.1| Porphyromonas uenonis 60-3 ctg1118640599731, whole genome shotgun sequence Length of sequence - 54816 bp Number of predicted genes - 64, with homology - 64 Number of transcription units - 24, operones - 7 average op.length - 6.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 454 589 ## COG0297 Glycogen synthase + Term 482 - 532 7.2 2 2 Op 1 . - CDS 523 - 1866 1200 ## PGN_2078 hypothetical protein 3 2 Op 2 . - CDS 1883 - 2971 1155 ## COG0836 Mannose-1-phosphate guanylyltransferase - Prom 3008 - 3067 3.2 4 3 Op 1 . + CDS 3712 - 4938 1381 ## PGN_0609 probable DNA mismatch repair protein 5 3 Op 2 . + CDS 4950 - 5423 326 ## COG2954 Uncharacterized protein conserved in bacteria 6 4 Tu 1 . - CDS 5416 - 5589 119 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 - Prom 5612 - 5671 3.4 + Prom 5557 - 5616 3.3 7 5 Op 1 . + CDS 5640 - 7802 2643 ## PGN_0607 hypothetical protein 8 5 Op 2 . + CDS 7810 - 8124 626 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme 9 5 Op 3 . + CDS 8152 - 8931 908 ## PG1778 hypothetical protein 10 6 Tu 1 . + CDS 9284 - 10639 1753 ## gi|228470681|ref|ZP_04055532.1| hypothetical protein PORUE0001_1278 11 7 Tu 1 . + CDS 10895 - 12016 1478 ## gi|228470702|ref|ZP_04055553.1| hypothetical protein PORUE0001_1279 12 8 Tu 1 . + CDS 12283 - 13188 915 ## gi|228470739|ref|ZP_04055590.1| hypothetical protein PORUE0001_1280 13 9 Tu 1 . + CDS 13391 - 17035 2819 ## BF2267 hypothetical protein + Prom 17292 - 17351 3.5 14 10 Tu 1 . + CDS 17477 - 18064 144 ## Ppha_0327 hypothetical protein + Prom 18200 - 18259 3.7 15 11 Tu 1 . + CDS 18281 - 18778 200 ## COG1943 Transposase and inactivated derivatives + Term 18904 - 18938 5.1 - Term 18977 - 19010 4.9 16 12 Tu 1 . - CDS 19068 - 19334 254 ## BDI_2865 hypothetical protein - Prom 19358 - 19417 4.3 + Prom 19717 - 19776 1.9 17 13 Tu 1 . + CDS 19802 - 20179 651 ## PROTEIN SUPPORTED gi|228470692|ref|ZP_04055543.1| ribosomal protein S12 + Prom 20379 - 20438 2.5 18 14 Op 1 51/0.000 + CDS 20552 - 21028 807 ## PROTEIN SUPPORTED gi|228470716|ref|ZP_04055567.1| ribosomal protein S7 19 14 Op 2 4/0.000 + CDS 21050 - 23173 2858 ## COG0480 Translation elongation factors (GTPases) 20 14 Op 3 40/0.000 + CDS 23192 - 23497 506 ## PROTEIN SUPPORTED gi|228470687|ref|ZP_04055538.1| ribosomal protein S10 21 14 Op 4 58/0.000 + CDS 23519 - 24136 1074 ## PROTEIN SUPPORTED gi|228470688|ref|ZP_04055539.1| 50S ribosomal protein L3 22 14 Op 5 . + CDS 24136 - 24759 1041 ## PROTEIN SUPPORTED gi|228470744|ref|ZP_04055595.1| ribosomal protein L4/L1 family protein 23 14 Op 6 . + CDS 24787 - 25080 489 ## PROTEIN SUPPORTED gi|228470703|ref|ZP_04055554.1| ribosomal protein L23 24 14 Op 7 60/0.000 + CDS 25084 - 25914 1422 ## PROTEIN SUPPORTED gi|228470735|ref|ZP_04055586.1| ribosomal protein L2 25 14 Op 8 59/0.000 + CDS 25946 - 26209 449 ## PROTEIN SUPPORTED gi|228470728|ref|ZP_04055579.1| ribosomal protein S19 26 14 Op 9 61/0.000 + CDS 26252 - 26665 686 ## PROTEIN SUPPORTED gi|228470727|ref|ZP_04055578.1| ribosomal protein L22 27 14 Op 10 50/0.000 + CDS 26671 - 27420 1275 ## PROTEIN SUPPORTED gi|228470719|ref|ZP_04055570.1| ribosomal protein S3 28 14 Op 11 . + CDS 27436 - 27870 748 ## PROTEIN SUPPORTED gi|228470718|ref|ZP_04055569.1| ribosomal protein L16 29 14 Op 12 . + CDS 27892 - 28086 316 ## PROTEIN SUPPORTED gi|228470732|ref|ZP_04055583.1| ribosomal protein L29 30 14 Op 13 50/0.000 + CDS 28112 - 28366 435 ## PROTEIN SUPPORTED gi|228470731|ref|ZP_04055582.1| 30S ribosomal protein S17 31 14 Op 14 57/0.000 + CDS 28370 - 28735 595 ## PROTEIN SUPPORTED gi|228470707|ref|ZP_04055558.1| ribosomal protein L14 32 14 Op 15 48/0.000 + CDS 28754 - 29074 536 ## PROTEIN SUPPORTED gi|228470722|ref|ZP_04055573.1| ribosomal protein L24 33 14 Op 16 50/0.000 + CDS 29077 - 29631 924 ## PROTEIN SUPPORTED gi|228470714|ref|ZP_04055565.1| ribosomal protein L5 34 14 Op 17 50/0.000 + CDS 29647 - 29925 467 ## PROTEIN SUPPORTED gi|228470694|ref|ZP_04055545.1| ribosomal protein S14p/S29e 35 14 Op 18 55/0.000 + CDS 30405 - 30800 675 ## PROTEIN SUPPORTED gi|228470690|ref|ZP_04055541.1| ribosomal protein S8 36 14 Op 19 46/0.000 + CDS 30822 - 31373 938 ## PROTEIN SUPPORTED gi|228470698|ref|ZP_04055549.1| ribosomal protein L6 37 14 Op 20 56/0.000 + CDS 31404 - 31748 564 ## PROTEIN SUPPORTED gi|228470737|ref|ZP_04055588.1| ribosomal protein L18 38 14 Op 21 . + CDS 31764 - 32282 843 ## PROTEIN SUPPORTED gi|228470709|ref|ZP_04055560.1| ribosomal protein S5 39 14 Op 22 . + CDS 32307 - 32483 294 ## PROTEIN SUPPORTED gi|228470686|ref|ZP_04055537.1| ribosomal protein L30 40 14 Op 23 53/0.000 + CDS 32507 - 32971 776 ## PROTEIN SUPPORTED gi|228470699|ref|ZP_04055550.1| ribosomal protein L15 41 14 Op 24 2/0.000 + CDS 32983 - 34329 895 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 42 14 Op 25 9/0.000 + CDS 34374 - 35165 928 ## COG0024 Methionine aminopeptidase 43 14 Op 26 2/0.000 + CDS 35167 - 35385 236 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 44 14 Op 27 . + CDS 35421 - 35537 194 ## PROTEIN SUPPORTED gi|228470715|ref|ZP_04055566.1| ribosomal protein L36 45 14 Op 28 48/0.000 + CDS 35621 - 36001 638 ## PROTEIN SUPPORTED gi|228470693|ref|ZP_04055544.1| 30S ribosomal protein S13 46 14 Op 29 36/0.000 + CDS 36014 - 36400 659 ## PROTEIN SUPPORTED gi|228470724|ref|ZP_04055575.1| 30S ribosomal protein S11 + Prom 36668 - 36727 3.1 47 14 Op 30 26/0.000 + CDS 36817 - 37422 1036 ## PROTEIN SUPPORTED gi|228470684|ref|ZP_04055535.1| ribosomal protein S4 48 14 Op 31 50/0.000 + CDS 37435 - 38427 1121 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 49 14 Op 32 . + CDS 38436 - 38945 851 ## PROTEIN SUPPORTED gi|228470701|ref|ZP_04055552.1| ribosomal protein L17 50 15 Op 1 . - CDS 39849 - 41138 1726 ## COG2812 DNA polymerase III, gamma/tau subunits 51 15 Op 2 . - CDS 41131 - 42417 1477 ## COG0628 Predicted permease 52 16 Tu 1 . + CDS 42483 - 42689 135 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 + Term 42717 - 42754 7.3 - TRNA 42766 - 42843 66.2 # Pro GGG 0 0 53 17 Tu 1 . + CDS 43230 - 43385 63 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Term 43452 - 43484 -1.0 + Prom 43450 - 43509 3.0 54 18 Tu 1 . + CDS 43558 - 44694 1268 ## COG0468 RecA/RadA recombinase 55 19 Tu 1 . + CDS 44829 - 45302 481 ## PRU_0934 prophage PRU01 putative transcriptional regulator 56 20 Op 1 . + CDS 45483 - 46316 486 ## PG0882 hypothetical protein 57 20 Op 2 . + CDS 46326 - 47717 1243 ## COG0726 Predicted xylanase/chitin deacetylase 58 20 Op 3 . + CDS 47731 - 48996 942 ## PG0884 hypothetical protein + Term 49030 - 49076 9.7 - Term 49016 - 49066 15.2 59 21 Tu 1 . - CDS 49097 - 49678 895 ## COG1592 Rubrerythrin - Prom 49715 - 49774 5.2 + Prom 49639 - 49698 4.5 60 22 Tu 1 . + CDS 49841 - 51154 1902 ## COG4487 Uncharacterized protein conserved in bacteria - Term 51021 - 51062 2.1 61 23 Tu 1 . - CDS 51160 - 51747 721 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 62 24 Op 1 27/0.000 + CDS 51946 - 52185 465 ## COG0236 Acyl carrier protein + Term 52284 - 52349 -0.1 + Prom 52346 - 52405 1.9 63 24 Op 2 1/0.000 + CDS 52425 - 53678 1543 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Term 53718 - 53781 6.2 64 24 Op 3 . + CDS 53800 - 54609 903 ## COG0571 dsRNA-specific ribonuclease + Term 54758 - 54789 4.1 Predicted protein(s) >gi|228307534|gb|ACLR01000176.1| GENE 1 2 - 454 589 150 aa, chain + ## HITS:1 COG:TM0895 KEGG:ns NR:ns ## COG: TM0895 COG0297 # Protein_GI_number: 15643657 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Thermotoga maritima # 1 54 115 168 486 57 44.0 8e-09 IFFIRGVLEAIKSLHWIPDVIHCLGWFSALAPVYLKTAYKNDPYFERAKVLFSVDGNEEE GEIGEDLIKKLEFDKITGDLLDPLQGEVTPDALRRMAIHYSDGVILGQESVSPELIEYLR SEPDHKVLEYPGPAVDHAEAYVDFYRSFTE >gi|228307534|gb|ACLR01000176.1| GENE 2 523 - 1866 1200 447 aa, chain - ## HITS:1 COG:no KEGG:PGN_2078 NR:ns ## KEGG: PGN_2078 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 3 429 2 419 450 278 38.0 3e-73 MQEMWLHQVWGNRLYESLTFEPHPCIPEGVTPIVIDPGRYNTNGGPDFSNLKLRIGPLTW AGNGEIHCQATDWLRHGHQLDPAYNNVLLHIVLQDDGPISLQAGTPPITCRMQINPDLLA IAQQLTEAPQIPRCGEACSQLPERLQADWFAQLTRERLERKCQQIETAMSFFKGDLAAVT HLFLMRYLGGKVNNDAFEQIARQLPPSILLKHKTSPLALEALLLGVGGLLESAPISPEID QYRERLKEEFTFLSHKYHLSPLSPGTIRMLRLRPSAFPHRRLAYLAALYYRSDNLPGELL RTSSLAHLEQLLTVTPTDYWQRHYHWGSETDAQLGTIGRATVESIAINVVIPLQYYLTQE RDLLGLSLANDSLMSAHDLPAERNSVVKRFVNEGLRPHSAYDSQALLQLYGNYCEPRRCW LCPVGRTLLQSYGAMSLPPSIGEQQDL >gi|228307534|gb|ACLR01000176.1| GENE 3 1883 - 2971 1155 362 aa, chain - ## HITS:1 COG:DRA0032 KEGG:ns NR:ns ## COG: DRA0032 COG0836 # Protein_GI_number: 15807702 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Deinococcus radiodurans # 1 354 11 363 372 249 38.0 6e-66 MEHYYCVIMSGGVGSRFWPISRQSRPKQFLDFFGTGRSLLQDTYRRFLRIVPEDHIYIVT HADYVDLTLEQLPGLTRDQILTEPLRRNTAPCIAYACYHIQQRDPKASIVVAASDHIIMN EDNFVQTVSQSLHFAALHPYLLTLGIKPTAPETGYGYIQVDSSESPLDGQYHKVKVFTEK PNREMAEIFVSCGEFLWNSGMFVWSVKTILDAFAKYMPEVSRLFTERASDFGTDRERAAI EEIYPYCPSISIDYGVLEKADNVLVTPATFGWADLGTWGALYDQSSKDQTGNVTNHQKTR FYESMNNILYIDDPDLLAVVQGVDDCIIAKHGNVLLICKREAEQSIKNYVTDVEIESGED YI >gi|228307534|gb|ACLR01000176.1| GENE 4 3712 - 4938 1381 408 aa, chain + ## HITS:1 COG:no KEGG:PGN_0609 NR:ns ## KEGG: PGN_0609 # Name: not_defined # Def: probable DNA mismatch repair protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 4 407 5 373 374 224 33.0 5e-57 MAQNIKVGDTIRYLNASGGGVVKRIERGVAWVEGPDGFELPTPIHECVVVDSRDTFVPAY KPPVVKRQEPATQPTKSNAPATPEVVEDAEQDLSFVAPLSKGPWFDRSGGEQLQVHVAYL PVSYEHFGQSPYETYLINESNYHLLFTYSTTTSAGGYKLRSAGVLEPDMRVLVEEFDASE INDHAVSHFQFIAYKPERTYRSMPPVERQVRMDVVKLAKRHAFRENPFFDEDALVIPVLE AYDGSQQAPAEEPQPAPSRSGALPQRAIEQKKATTAPQKGPQKGAQKSSQKQPKQSAPQP QPERKQPEPPAAPEQTIEKVGLEAERILPNATGMTPHEVLLYQLKNFRRELDKRLERRGS KVIFIHGAGQGVLHQLIINRIEQDYPMVQYRDVTFDGFPMGAIEVTIS >gi|228307534|gb|ACLR01000176.1| GENE 5 4950 - 5423 326 157 aa, chain + ## HITS:1 COG:SMc03154 KEGG:ns NR:ns ## COG: SMc03154 COG2954 # Protein_GI_number: 15966638 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Sinorhizobium meliloti # 3 150 4 150 157 137 50.0 7e-33 MLEIERKYLVCRDDYLREASHHRHIRQGYLAVDERVTVRVRIIDEEARLTIKGSSTADGL VRSEWEYPIPVADAEEMLSQCASHCLEKVRYYVPYEGFVWEVDRFGGRLEGLVMAEVELT SPTDCPALPSWLGREVTGDIRYYNAMLAQEPAPPPTT >gi|228307534|gb|ACLR01000176.1| GENE 6 5416 - 5589 119 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 21 56 1 36 58 65 97.0 7e-10 MHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSGQSCLQDCETVDFCNSLK >gi|228307534|gb|ACLR01000176.1| GENE 7 5640 - 7802 2643 720 aa, chain + ## HITS:1 COG:no KEGG:PGN_0607 NR:ns ## KEGG: PGN_0607 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 6 719 3 719 720 805 54.0 0 MTTHLRRVLLLLLTSLTLSAVALADGGMWLLEQMADHADELRAKGLQIPVEEIYNPDGPC LQRAVVMFDGGCSGVFVSNQGLVLTNHHCGYDQIQSHSAVEHNYLRDGIWTQSMREELPC PGLEVISIDKITNVTDQVNKLLKQSPYKKDPMAAFSIATLTKMIPAIVGEAAMRQPGIRY ELKPFYGGNRYYLFTKKVFTDVRLVAAPPSAIGKYGSDTDNWMWPRHTGDFSIFRVYVDK NNNPADYSADNVPYKPERFAAVSTSGVQRDDFALIMGFPGTTNHFFTEAQVDEWSEIDNN IRIEMRGLRQEVMLRRMLADEKVNIQYAAKYAYSQNGYKRAQGANWAIRTRNLQATKRAQ QDELAQWAKANKRPEVTKAIQTIADCVAARREARRVQWYLMEGVLTPIEFLQIPLADGKK LQQWSDPKVREEIISDLRRGYAAFYNKDYDPAVDKEVATVLLQRYTERIDEAHWPVALRE GVAQYGSVQAYVTHLFDSSIFADPARFDAFLKTPSREQLMNDPMTQFAVSTINLFVQMRE QQAAYDDPIKLAHRDYVRGMMDMQGARKVWPDANLTLRFTYGNVRGYAPRDNVYYGHQTT LTGVMEKEDPKSWEFALPDRIKEIYKQKDYGVYALPNGEMPVNFCATTHTTGGNSGSPVF DGKGRLIGLNFDRNWEGVGGDIEYLPNYQRSIILDIRYLLMLVDKYGHCQRLLDEMNLVK >gi|228307534|gb|ACLR01000176.1| GENE 8 7810 - 8124 626 104 aa, chain + ## HITS:1 COG:CC1859 KEGG:ns NR:ns ## COG: CC1859 COG2151 # Protein_GI_number: 16126102 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Caulobacter vibrioides # 2 101 17 115 118 103 56.0 8e-23 METLQLEEQIVKMLRTVYDPEIPVNIYDLGLIYNVDIQDEGAKVVITMTLTAPNCPAADF ILQDVQIKVESIKGVKRCDIELTFDPPWDSSMMSEEAQLELGFL >gi|228307534|gb|ACLR01000176.1| GENE 9 8152 - 8931 908 259 aa, chain + ## HITS:1 COG:no KEGG:PG1778 NR:ns ## KEGG: PG1778 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: Lipopolysaccharide biosynthesis [PATH:pgi00540]; Metabolic pathways [PATH:pgi01100] # 4 258 5 260 262 253 48.0 4e-66 MGAIYFLSDAHLGSPYHDDPRRAELRLVAWLRSIADDAEAVYLLGDMLDYWFDYKYVVPR GSVRFLATLADLVEQGVEVHYIMGNHDLWLTDYFTQELGVIVHRDTIVCQLKGRTFRLSH GHREYALRYKKERWLFGTFESRLARCLYAAIHPRWTVGFAQRWAYRNRLRQMRAANDPSR PGYNPQMNVERDEWLVQYTKELIPQHPEIDYYIYGHRHLLLNLSLPNDRRCIILGDWIHY NSYARWDGESLTIGLYEEP >gi|228307534|gb|ACLR01000176.1| GENE 10 9284 - 10639 1753 451 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470681|ref|ZP_04055532.1| ## NR: gi|228470681|ref|ZP_04055532.1| hypothetical protein PORUE0001_1278 [Porphyromonas uenonis 60-3] # 1 451 1 451 451 852 100.0 0 MRSRIQNILLLLASMLLTVVATTSCNNSPKESDQERTLIIKLSSSGSFRAVEEGAKENSY TVDTYTPITLFFYDAQGEPTEPYRVELKSNEDIRKARSADGYEMEVREAVSKVSAVAGVP GIIKPSELDDRKIYSLQGLSGAEAQKDGFLYKVPYVAPKTPVQQDPADQNKLTVTLQPVP NVARLEISGNIEVPFESTQPAVDYIIEKFMKRYSDDQTNYSWLPTPQDVTLRTIGEVTIR GIYVNNYKETPNVDNAHRTRLTDEDWKNGQWTGHNAAMHTLFEGASYATAMNKKQVDAYQ IYPGGTTADKAEALDHIIVKVEYKVHTQVGHFNYKVYNKGQQKDVYACTGVEDRGEQTLT RFITIRKFLVTEGGTDNSLVSFDPGKIYRIDLSYLSSLFSTNAKPGIKNTNEITEVTPRP EGTDERPEETTNTIPVSVVDWIHININTELD >gi|228307534|gb|ACLR01000176.1| GENE 11 10895 - 12016 1478 373 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470702|ref|ZP_04055553.1| ## NR: gi|228470702|ref|ZP_04055553.1| hypothetical protein PORUE0001_1279 [Porphyromonas uenonis 60-3] # 17 373 14 370 370 639 100.0 0 MKYMKMAAIAMMALALFSCNKKDEPKKAENAVLRICINDSELRALGAGYANGDKTECMTD VVLTLDNGVTIKLENQDLADAKNLQKGYEKEVNFAVNTVALTANGTVGDGTKITSLQGKN LKTEIPLEAKATAVTTTTANGQTVYSVTLKPVPHVARVEVFGKIEPKENETTHKNAFKSI TVEHVYVNNYLSTRTGARHLCVTNGKDGFKDDPAVEAAMNDEIKAADLDEFVAGTKVAGY QLFPIKENEAAGTEFYDHVILKIKIEYSDEAIAAKPELKKMTERYVTMVKFVDATTASNP AIASFEAGKIYKLNLKDLSDDFKTGNDGTPDPNNPDTPDPEPNAKRLLNVKVEPFTWTAV NIKPDVNNNGYKK >gi|228307534|gb|ACLR01000176.1| GENE 12 12283 - 13188 915 301 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470739|ref|ZP_04055590.1| ## NR: gi|228470739|ref|ZP_04055590.1| hypothetical protein PORUE0001_1280 [Porphyromonas uenonis 60-3] # 1 301 1 301 301 589 100.0 1e-167 MAKKVLLLPLTVLLMALLSSCVYEDLSKCPEPRLRFVYNADGSDNVLPKYIKDAHLYIYD ESGAVCYTKQLTRQDLAEGIQLPVLTFAQYRVIAWANVTKQSQIANPDTLAKADITAQPD DKGFYRGTDSLYRAELSLDLRHASQGEYTVPFSSAHIGLDVVIKGYDAFHPGAGEPQIEI LSGGTHYTFVEHPAGIPLPDADKTFVPILGHSQRDDMYRARFDLFRFTDAQAPVLRLIDS KSGKEIAKINITDYLKEHNISFDKLHEANLPLLISFTAPLKITIKPFVWGSINIKPDQYK Q >gi|228307534|gb|ACLR01000176.1| GENE 13 13391 - 17035 2819 1214 aa, chain + ## HITS:1 COG:no KEGG:BF2267 NR:ns ## KEGG: BF2267 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 4 414 1 356 723 120 27.0 3e-25 MTRLTKYTIQLISGLLLALLTAGCVADRNVSDCITEGEDVELEFAVQVPALETSLRGLDA TQEQAVKDIQLLVFNTQNAQGDNLGEPDETFAYEAEVKSKTQEGNTIRIRCGLKASPDKP MRVVCIANAPTKINTTDFTNKTKKTILEDDQMKKNFTAAWPTEGNSYYIPMWGESDKQTV TRNTKFNSCDVTGLGGTGVNQDNAGVIHLVRALARIDVGINFDEDIKGEKGKGSTDFKIK SVRVYRYATSMYMTGTQSTTFNFNGTAREAKPHTPEGVNPAVDTKPLKFEATEGVNDYVR NIYIPEISNQGDKNQRTCLVIGGYYNNSDKETYYRVDFIKREDGKPADKITKKLDVLRNH RYRFNITKIKGPGTSTPGEALTTEPVNISCDVVVWDEADIDKIMYDGQYYLSVSKDKFHF GKDATSESYKIRTNWPKGYKIVDKDGNEWAKTGTQGAWAYFTEPAGQTFKENKDMTSTVN VLENTTGKVRTITAKELFVKAGRIKWPLQITQSDKIELDVKVYEYKDGKWDPSKPINSWD FQTDVNYDFRVVFTPGADLERISLQFAEHFDWHRTDINKEAGYALYTVKLKKNSVPEDRF SLVETSRFRVTKGGVEAHTDFVTRYLKYDAIPYGDVALTKNMLKYDEVYPLSDISQKFYI KATAPYKLSVKKITIPQGDDDGKTELIVKGWKDGTEVQKEELGTILTGRKVQFEPYDYIS GGCRYQGQEVIQASVTFELSSTDPSKPFETKTFTISLLSALLQPEANSYIMKLGQMPILI PCSQINRAADFYDQFADNFDLNCEYMLEKNYVKQKQVEEIKRGGGWHLNRLESTDTNWDG QIVWSTLTKAGNNPGLTVEKKRLTIRGRNYILVRLNEPKYSTPNDNPNPGTALVAAVKGG KVLWSWMIWVVGIRTDDEPDYPWLTRVGTTKSPKPYMNRNLGATRWAGSHLDPSFDIRKV GLYYQFGRPTPFHGEGKASGIGISTYESKSVDKVYYNTSLVPEKELTKMPIITGGGNGNA FWPMRMLIERPTQMCHRESNEGYIYEMGVLVGGTTTVRAAALWQGTDQMVLKNDARTKAL YRTKKTPLDPCPYGWKVPAAGAIESMPITAREDLYLPLSGFFAAGNINDLRIGPADSGIG RFSAFHSATPYSNVDYSPLYFRLHWGNAWAYIYTNGDLRRCMAGAVPILPIECEDETDYL NYTEEGFKSLHNIF >gi|228307534|gb|ACLR01000176.1| GENE 14 17477 - 18064 144 195 aa, chain + ## HITS:1 COG:no KEGG:Ppha_0327 NR:ns ## KEGG: Ppha_0327 # Name: not_defined # Def: hypothetical protein # Organism: P.phaeoclathratiforme # Pathway: not_defined # 3 101 20 118 205 121 64.0 2e-26 MSESFLTQSGNPRNLRVYKVTEVIYDLTYYFTQHYLQRGDRTIDQMVQAARSGKQNIIEG NEAATTSLESNIKLTNVARASLAELLTDYEDYLRVRNLPLWGATHPRYERIRSYARSEEL QQEYQALMSRLRAWLGRDRQTTRRGPVMCVTRDVCQFCRVTVLMCNGCRDARKCLAGGRP LNQRLRCPIVSKRDE >gi|228307534|gb|ACLR01000176.1| GENE 15 18281 - 18778 200 165 aa, chain + ## HITS:1 COG:HI0554 KEGG:ns NR:ns ## COG: HI0554 COG1943 # Protein_GI_number: 16272498 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Haemophilus influenzae # 9 161 12 178 180 100 35.0 1e-21 MYPPCYNDRKSPRASFHDYKAGVYFITICTKDKQHYFGKIQDGIMHLSPIGEFCQEQWEK VSDHNPYATVPLFVVMPNHVHAIVSINQETERAIQKTDRETLAIVVGGIKREVTMFARQH KMVFDWQSRFYDRIIRNRKEGNSIANYIENNVARWDSDDYYSREP >gi|228307534|gb|ACLR01000176.1| GENE 16 19068 - 19334 254 88 aa, chain - ## HITS:1 COG:no KEGG:BDI_2865 NR:ns ## KEGG: BDI_2865 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 15 83 5 73 75 76 55.0 3e-13 MSQTMQDESCLFLVRSYGVQELAMRYFPDVLPSSATRHLRHLIRGDSELLEKLSKIGYRS GCRSYTPAMVHLIVRYLGHPQHYIYADD >gi|228307534|gb|ACLR01000176.1| GENE 17 19802 - 20179 651 125 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470692|ref|ZP_04055543.1| ribosomal protein S12 [Porphyromonas uenonis 60-3] # 1 125 1 125 125 255 100 4e-67 MPTIQQLVRKGRETFEEKGKSPALGSCPQRRGVCVRVYTTTPKKPNSAMRKVARVRLTNG KEVNAYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGALDTAGVDGRRQRRSKYGAK RPKAK >gi|228307534|gb|ACLR01000176.1| GENE 18 20552 - 21028 807 158 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470716|ref|ZP_04055567.1| ribosomal protein S7 [Porphyromonas uenonis 60-3] # 1 158 1 158 158 315 100 4e-85 MRKAKPKKRQVLPDPVFGDRQVTKFVNHLMYDGKKSLAYSIFYRALDIVKDKMSQEEKSA LEIWKAALDNVTPHVEVKSRRIGGATFQVPTEIRPERRESISMKNLIIFARKRGGKTMAD KLAAEIMDAYNSQGGAFKRKEDVHRMAEANRAFAHFRF >gi|228307534|gb|ACLR01000176.1| GENE 19 21050 - 23173 2858 707 aa, chain + ## HITS:1 COG:HP1195 KEGG:ns NR:ns ## COG: HP1195 COG0480 # Protein_GI_number: 15645809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Helicobacter pylori 26695 # 3 701 2 692 692 831 59.0 0 MSAIHSKLEQTRNIGIMAHIDAGKTTTSERILFYTGLTHKIGEVHDGAATMDWMEQEQER GITITSAATTTFWTYGDKKYKINLIDTPGHVDFTVEVERSLRVLDGAVATFCAVGGVQPQ SETVWRQADKYKVPRIAYINKMDRSGANFYEVQRQMVEMLGAKACPIQIPVGEEDSFKGV IDLITMKAIIWHDETMGAEYEIDEIPDNLRADAEEWRDKLLETLAETDETLMEKYFEDPS TITEDEIRVAIRKATLAMEIFPMLCGSSFKNKGVQTLLDAVCAYLPSPVDTPEVVGHAID SDKEEVREVDPEAPMSALAFKIATDPFVGRLCFFRVYSGHIDAGSYVFNSRSGKKERISR LFQMHSNHQNPMETIGTGDIGAGVGFKDIRTGDTLCDENAPLVLESIDFPDPVIGIAVEP KTQKDMDRLGVGLSKLAEEDPTFVVKTNEETGQTVISGMGELHLDIIIDRLKREFKVECN QGKPQVAYKEAVTQTVDLREVYKKQSGGRGKFADIIIKFGPADEDFDGTLQFVDEVKGGN IPKEFIPSVQKGFEKAMKSGVLAGYPLDSLKVTLVDGSFHPVDSDQLSFEVAAMMAFKEA SEKASPVLMEPIMQLEVVTPEENMGDVIGDLNKRRGQVEGSEVNRSGAQVIKAKVPLSEM FGYVTALRTITSGRASSTMSFSHYAEVSSSIAKKILEELNGRVDLIK >gi|228307534|gb|ACLR01000176.1| GENE 20 23192 - 23497 506 101 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470687|ref|ZP_04055538.1| ribosomal protein S10 [Porphyromonas uenonis 60-3] # 1 101 1 101 101 199 100 3e-50 MSQKIRIKLRSYDHMLVDKSAEKIVTAVQNTNALVSGPVPLPTHKRIFTVNRSTFVNKKS REQFELNAHKRLIDIYNASAPTIDALMKLEMPSGVDIEIKY >gi|228307534|gb|ACLR01000176.1| GENE 21 23519 - 24136 1074 205 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470688|ref|ZP_04055539.1| 50S ribosomal protein L3 [Porphyromonas uenonis 60-3] # 1 205 1 205 205 418 100 1e-116 MPGLLGKKIGMTSVFSAEGVNVPCTVIEVGPCVVTQVKTADRDGYEAIQLGFQDAKDKHT TRPLQGHFKAAGVTNKRHLAEFMGFGSDYKLGDEITVELFNDTHYVDVHGTSKGKGFQGV VKRHGFGGVGQSTHGQDDRLRAPGAVGACSYPAKVFKGTRMAGQMGNKRVTVQNLEVIKV MPEHNILVLKGSVPGAKGSIIAIEK >gi|228307534|gb|ACLR01000176.1| GENE 22 24136 - 24759 1041 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470744|ref|ZP_04055595.1| ribosomal protein L4/L1 family protein [Porphyromonas uenonis 60-3] # 1 207 1 207 207 405 100 1e-112 MELSIYNIQGEDTGRKIALESSVFGIEPNDHAIYLTVKQYRANQRQGTHKTKERSEMSGS TRKLFRQKGTGGARRGDINSNILRGGARVFGPRPRSYSFKLNKKLRQLARRSALTYKAQD NQIMVLDQLSFEAPKTKSFVSMAKALNVDGQKTLYVVSQIEDTVALSARNIPGVSIIRAQ DLNTYCVLDCRKIVFTEDALAQVNEMF >gi|228307534|gb|ACLR01000176.1| GENE 23 24787 - 25080 489 97 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470703|ref|ZP_04055554.1| ribosomal protein L23 [Porphyromonas uenonis 60-3] # 1 97 1 97 97 192 100 3e-48 MGIIIKPIISEKMTAITESNQQRYAFLVAPTANKIEIRNAVEKMYNVKVDSVNTCRYDGK RSSRYTKSGVITGRKPAFKKAFITLQGEDTIDFFSNI >gi|228307534|gb|ACLR01000176.1| GENE 24 25084 - 25914 1422 276 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470735|ref|ZP_04055586.1| ribosomal protein L2 [Porphyromonas uenonis 60-3] # 1 276 1 276 276 552 100 1e-156 MGIRKLKPATPGQRHKTIGAFDAITASAPEKSLVVGARKSGGRNNTGKMTIRNVGGGHKR KYRLIDFKRTKDGIPATVKSIEYDPNRSSRIALLYYADGAKSYIIAPNGLTVGQQVMSGD NATPEVGNALPLAKVPVGMIVHNVELRPGQGGKLVRSAGAFAQLVAREDNYVVLRMPSGE TRRILAACKATIGSVGNSDHALERSGKAGRTRWLGRRPRVRGVAMNPVDHPMGGGEGRAS GGHPRSRTGLYSKGLKTRAPKKHSSKYIIERAKRKK >gi|228307534|gb|ACLR01000176.1| GENE 25 25946 - 26209 449 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470728|ref|ZP_04055579.1| ribosomal protein S19 [Porphyromonas uenonis 60-3] # 1 87 1 87 87 177 100 1e-43 MSRSLKKGPFISVKLEKKVLAMNESGKKSVIKTWSRASMISPDFVGHTIAVHNGKSFIPV FITENMVGHKLGEFAPTRTFRGHSGNR >gi|228307534|gb|ACLR01000176.1| GENE 26 26252 - 26665 686 137 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470727|ref|ZP_04055578.1| ribosomal protein L22 [Porphyromonas uenonis 60-3] # 1 137 1 137 137 268 100 4e-71 MSANNQDTIETTAQETVTQPAVARLRNVPTSPRKMRLVVDNIRGMEVERAMATLRFSSRR VAAQRVEQLIRSAVSNWEQLNGRKADEGELYVSKVYVDEGVTLKRLRPAPQGRGYRIRKR SNHITVWVDQIVNNVAK >gi|228307534|gb|ACLR01000176.1| GENE 27 26671 - 27420 1275 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470719|ref|ZP_04055570.1| ribosomal protein S3 [Porphyromonas uenonis 60-3] # 1 249 1 249 249 495 100 1e-139 MGQKINPIANRLGYIRGWDSNWFGGRNYGDTLVEDDRIRKYLHTRLSGALVSRIIIERAL KVVTITICTARPGMIVGKGGQNVENLKAELKKVTKADNIQINIYEVRKPEVDAVIVANDI ARKLEGRMSYRRTVKMAIANAMRAGAEGIKIQLSGRLNNAEMARAELYKEGRTPLHTLRA DIDYAQTGALTKVGMIGVKVWIMNGEVYERRDLAPDLSQPRRQAGRRGGDSRGDRRGGFR RGGRNRSNR >gi|228307534|gb|ACLR01000176.1| GENE 28 27436 - 27870 748 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470718|ref|ZP_04055569.1| ribosomal protein L16 [Porphyromonas uenonis 60-3] # 1 144 1 144 144 292 100 2e-78 MLQPKKTKFRRQQKGRMKGNAQRGNQLAFGSFGIKSLESKWITGRQIEAARIAVTRYMQR QGQVWCRIFPDKPITAKPAEVRMGKGKGNPEGFVAPVTPGRMLFEVEGVPYEVAKEALRL AAQKLPVTTKFVVRRDYDAANPNV >gi|228307534|gb|ACLR01000176.1| GENE 29 27892 - 28086 316 64 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470732|ref|ZP_04055583.1| ribosomal protein L29 [Porphyromonas uenonis 60-3] # 1 64 1 64 64 126 100 3e-28 MQISEIKELTTEEIRERIEAEQATYQQKRIDHYVSPAENPAAFREQRRTIARLKTVLAER ETNN >gi|228307534|gb|ACLR01000176.1| GENE 30 28112 - 28366 435 84 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470731|ref|ZP_04055582.1| 30S ribosomal protein S17 [Porphyromonas uenonis 60-3] # 1 84 1 84 84 172 100 5e-42 MERNHRKERIGIVTSNKMEKTITVASRFKEKHPIYGKFVSKTKKYYAHDEKNETNVGDRV RIMETRPLSRTKRWRLTEIIERAK >gi|228307534|gb|ACLR01000176.1| GENE 31 28370 - 28735 595 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470707|ref|ZP_04055558.1| ribosomal protein L14 [Porphyromonas uenonis 60-3] # 1 121 1 121 121 233 100 1e-60 MIQQESRLNVADNSGAREVLCIRVLGGTRRRYASVGDIIVVTVKSVIPSSDMKKGTVAKA LIVRTKKEIRRTDGSYIRFDDNACVLLTPNGELRGTRIFGPVARELRAVNMKVVSLAPEV L >gi|228307534|gb|ACLR01000176.1| GENE 32 28754 - 29074 536 106 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470722|ref|ZP_04055573.1| ribosomal protein L24 [Porphyromonas uenonis 60-3] # 1 106 1 106 106 211 100 9e-54 MSKFHIKKGDIVMVNAGDDKGKTGRVLKVLVKKQRAIVEGLNMVSKHTKPNAQNPQGAIL SMEAPIHISNLNVLDPQSGKGTRIGRRRDDNGKLVRFAKKSGEVIK >gi|228307534|gb|ACLR01000176.1| GENE 33 29077 - 29631 924 184 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470714|ref|ZP_04055565.1| ribosomal protein L5 [Porphyromonas uenonis 60-3] # 1 184 1 184 184 360 100 1e-98 MALTVNLKKLYTEQIAPDLMKHFAYKSSMQVPRLEKIVINQGLGMATGDKKIIDVAIDEL TQITGQKAVATHSRKDISNFKLRKQMPIGVMVTLRGDRMYEFLERLVRVALPRIRDFKGI NSKLDGRGNYTLGISEQIIFPEINLDSITKILGMNITFVTSAPTDEEGFELLKRFGLPFR TTNK >gi|228307534|gb|ACLR01000176.1| GENE 34 29647 - 29925 467 92 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470694|ref|ZP_04055545.1| ribosomal protein S14p/S29e [Porphyromonas uenonis 60-3] # 1 92 1 92 92 184 100 9e-46 MAKESMKAREVKRQKLVQKYAKRRAELKAAGDYESLQKLQTLPRNSSPVRLHNRCKITGR PKGYMRQFGISRIQFREMASAGLIPGVKKASW >gi|228307534|gb|ACLR01000176.1| GENE 35 30405 - 30800 675 131 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470690|ref|ZP_04055541.1| ribosomal protein S8 [Porphyromonas uenonis 60-3] # 1 131 1 131 131 264 100 7e-70 MTDPIADYLTRLRNAIKAGHRVVEIPASNIKKDITKILFDKGYILNYMFEEEGCKGTIKV ALKYDLSNKVNAIKCLKRVSRPGLRKYVGYKDMPRVLNGLGIAILSTSHGVMTDKEAREL KIGGEVLCYVY >gi|228307534|gb|ACLR01000176.1| GENE 36 30822 - 31373 938 183 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470698|ref|ZP_04055549.1| ribosomal protein L6 [Porphyromonas uenonis 60-3] # 1 183 1 183 183 365 100 1e-100 MSRIGKLPIAIPQGVTVSQEDHYVTVKGPKGELKQYIDPRIEVSIQDGEITLARHSDERQ ERSLHGLYRQLIHNMVTGVHEEFTQTLELIGVGYRATNQGQILELSLGFTHAIYLVLPNE IKIETQMVRNQTPKIILKSCDKQLLGQVCAKIRSFRKPEPYKGKGVRFLGEEVRRKSGKT AGK >gi|228307534|gb|ACLR01000176.1| GENE 37 31404 - 31748 564 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470737|ref|ZP_04055588.1| ribosomal protein L18 [Porphyromonas uenonis 60-3] # 1 114 1 114 114 221 100 5e-57 MNKKAQRRKHIKTRVRGKISGTPQRPRLSVFRSNKQIYAQVIDDIEGRTLASASSLKMET SGTKKEVAAQVGQEIARVALAAGIDTVVFDRNGYLYHGRVKELADAARTGGLKF >gi|228307534|gb|ACLR01000176.1| GENE 38 31764 - 32282 843 172 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470709|ref|ZP_04055560.1| ribosomal protein S5 [Porphyromonas uenonis 60-3] # 1 172 1 172 172 329 100 2e-89 MAIATNRVTATNDLDLKDRLVAINRVTKVTKGGRTFTFAAIVVVGNEDGVVGYGMGRASE VPAAIAKGVEAAKKNLIRVPIHNGTIPHEQIGRFGGARILLRPASAGSGVIAGGAMRAVL DSVGVTDVLAKSQGSTNPHNLVKATIAALAELRSPLMVAQSRGISVERVFKG >gi|228307534|gb|ACLR01000176.1| GENE 39 32307 - 32483 294 58 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470686|ref|ZP_04055537.1| ribosomal protein L30 [Porphyromonas uenonis 60-3] # 1 58 1 58 58 117 100 1e-25 MAKIKIEQVRSRIRCNKSQKRTLDGLGLRKMHQIVEHEDTPQIRGMVAKVHHLVQVVE >gi|228307534|gb|ACLR01000176.1| GENE 40 32507 - 32971 776 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470699|ref|ZP_04055550.1| ribosomal protein L15 [Porphyromonas uenonis 60-3] # 1 154 1 154 154 303 100 1e-81 MDLSTLKPAEGSVHSRRRIGRGQGSGRGGTSTRGHKGAKSRSGYKHKVGFEGGQMPIQRR LPKFGFNNINRVEYRPVNLAALEQLAQNTEFFPNQAETAVITKDKLVEAGLASRNESVKI LAQGELTRPIQVEADAYSARAKELIEAQGGSILQ >gi|228307534|gb|ACLR01000176.1| GENE 41 32983 - 34329 895 448 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 12 443 19 447 447 349 41 2e-95 MRLVDTIKNIWKIEDLRKRILITILYVVIYRLGSFVVLPGVNPDTLTSLASQTSEGLMAL LNMFSGGAFSNASIFALGIMPYISASIVMQLAAIIIPSMQKMQREGESGRRKINQWTRYL TVLILLIQAPAYLLNLDMQLRAAGASLPSGFMYRVFATVILAAGSMFVLWLGERITDKGV GNGISFIILIGIIARLPHALIAEFNYRLISASGGLVAFLAEIVFLLFVTAGAILLVQGTR KVPVQYAKRVVGNKQYGGARQYIPLKVNAANVMPIIFAQAIMFIPISLASYFTGGDGTPS RFIQVLSDNTSFWYNFIFATLIILFTYFYTAITINPTQMADDLKRNNGFIPGVKPGRSTR DYLDGIMDRITLPGAFFLALVAIMPAFAQILGISSAFAQFFGGTSLLILVGVVLDTLQQV ESHLLMRHYDGLLKSGRIKGRTGSVSAY >gi|228307534|gb|ACLR01000176.1| GENE 42 34374 - 35165 928 263 aa, chain + ## HITS:1 COG:BH0156 KEGG:ns NR:ns ## COG: BH0156 COG0024 # Protein_GI_number: 15612719 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Bacillus halodurans # 1 242 1 241 248 262 55.0 6e-70 MIYLKTSEEIELMRVANRLVGETLGEVAKHIAPGVTTKHLDTIAYTFICDHGATPAFLGY GGFPASICTSINDHVVHGIPSDREILREGDIISVDCGTHINGFTGDSAYTFAVGEIDPEV ERLLTVTRDSLYLGIKQAVEGHNVGHIGAAVQRHCEAHGYGVVRELVGHGIGHAMHEDPN VPNYGYPGVGPKLRAGMCICIEPMVTMGRRKVVFESDGWTVRTHDGKPAAHFEHCLAIMP DGQAPQILSTYEYIKEVLGTREF >gi|228307534|gb|ACLR01000176.1| GENE 43 35167 - 35385 236 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 95 62 6e-19 MAKQTAIEQDGVVLEALSNAMFKVQLQNGHIITAHISGKMRMHFIRILPGDKVKVEMSPY DLTRGRISYRYK >gi|228307534|gb|ACLR01000176.1| GENE 44 35421 - 35537 194 38 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470715|ref|ZP_04055566.1| ribosomal protein L36 [Porphyromonas uenonis 60-3] # 1 38 1 38 38 79 100 4e-14 MKVRASIKKRSEDCKIVRRKGRLYIINKKNPKFKQRQG >gi|228307534|gb|ACLR01000176.1| GENE 45 35621 - 36001 638 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470693|ref|ZP_04055544.1| 30S ribosomal protein S13 [Porphyromonas uenonis 60-3] # 1 126 1 126 126 250 100 1e-65 MAIRIVGVDLPQNKRGEIALTYIYGIGRSSAARILDAAGVDRNIKVQDWTDDQAAAIREQ ISNGYKVEGDLRSEKQLNIKRLMDIGCYRGIRHRIGLPLRGQSTKNNARTRKGKRKTVAG KKKATK >gi|228307534|gb|ACLR01000176.1| GENE 46 36014 - 36400 659 128 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470724|ref|ZP_04055575.1| 30S ribosomal protein S11 [Porphyromonas uenonis 60-3] # 1 128 1 128 128 258 100 5e-68 MAKKTVTKKRAVKVDAQGQAHIHSSFNNIIITLTNSEGQVISWSSAGKMGFRSSKKNTPY AAQLAAQDCAKTAFDLGLRKVKAYVKGPGNGRESAIRTIHGAGIEVTEIIDVTPLPHNGC RPPKRRKV >gi|228307534|gb|ACLR01000176.1| GENE 47 36817 - 37422 1036 201 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470684|ref|ZP_04055535.1| ribosomal protein S4 [Porphyromonas uenonis 60-3] # 1 201 1 201 201 403 100 1e-111 MARYIGPKSKIARKFGEPIFGADKVLSKKNYPPGQHGNNRRRKQSEYALQLREKQMAKYT YGVLERQFRNLFEKAQRTSGITGEILLQLLESRLDNVVFRLGIAPTRAAARQLVSHRHIV VDGEVVNIPSYTLKPGQIVGVRERDKSMEVIADSLAGYNHSKYPWLEWDARTYSGKYLNV PTREEIPEPIKEQLIVELYSK >gi|228307534|gb|ACLR01000176.1| GENE 48 37435 - 38427 1121 330 aa, chain + ## HITS:1 COG:CAC3104 KEGG:ns NR:ns ## COG: CAC3104 COG0202 # Protein_GI_number: 15896355 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Clostridium acetobutylicum # 21 321 20 313 315 228 44.0 1e-59 MAILAFQQPDSVLMLDASDHYAKFEFKPLEPGYAMTIGNALRRILLSSLEGYAIASIRIE GVEHEFATIPGVLEDVTHIILNLKQIRFRATVEDPQEETITLHVTGRNSFKAGDLNKVLT SYKVQNPDLVICNLAEDADFTIEIRINKGRGYVVSEENRREDDPVNTLPIDGIYTPIRKV NQTTEAYRVDQRTDYEKLVLEIETDGTIHPREALREAAKILISHFALFTDKEFEVELPEE EPEQLLDNQMMKVRSQLMTDLATTDLSVRALNCLKAAGISTIADLLSRDREELLKIKNFG KKSLVELEQFLTDQKLDFDMDLSPYRLDND >gi|228307534|gb|ACLR01000176.1| GENE 49 38436 - 38945 851 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228470701|ref|ZP_04055552.1| ribosomal protein L17 [Porphyromonas uenonis 60-3] # 1 169 1 169 169 332 100 3e-90 MRHNKKFNHLGRTKAHREAMLANMASSLIMHKRINTTVAKAKELRKFVEPIITTAKNDTT PSRRLAFSYLRDKEAVKELFGTVADKVGDRPGGYTRILRTGLRLGDNASMCFIELVDFND NITKSASAPKSEGKKRTRRSRRASGATKAAAQEAPATEAPAQAEEPAQE >gi|228307534|gb|ACLR01000176.1| GENE 50 39849 - 41138 1726 429 aa, chain - ## HITS:1 COG:CAC0125 KEGG:ns NR:ns ## COG: CAC0125 COG2812 # Protein_GI_number: 15893421 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Clostridium acetobutylicum # 10 365 8 359 542 263 42.0 3e-70 MSDNFIVSARKYRPQTFDEMLGQEAICLTLKSAIQQGKIAHAYLFCGPRGVGKTSAARIL ARTINCEQLTPQGEACGVCANCQAALHQRAFNIYELDAASNNSVDDIRRLNEDVYIRPQQ GKYKVYIIDEVHMLSSGAFNAFLKTLEEPPGYVVFILATTEKDKVLPTILSRCQVYDFKP IPPEQIAEQLRRVADAEGLQYDPRSFDTIARIADGGMRDALSLFDRLASTAQDGVISYEQ TLQTLNILDDEYYFYFTTYLYSGDYKRTLLLLDELLGKGVAMRQLIIGLADFMRNLLVAR TPETMQLFPYTGVHAERFATLAQQIHPLFLYKSISKLVSCERNYRSSQAKRLLVELTFMG ISEMCGAFKNATVAPPTAAPATPTPQESSVQAPQATYQAPPAATPKPSTAMPTPSAATPT QDEKKRVLR >gi|228307534|gb|ACLR01000176.1| GENE 51 41131 - 42417 1477 428 aa, chain - ## HITS:1 COG:VC0624 KEGG:ns NR:ns ## COG: VC0624 COG0628 # Protein_GI_number: 15640644 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Vibrio cholerae # 68 371 31 351 361 104 26.0 3e-22 MTSNKASSDSATQPSETKSSRQVSPDELPHSRTKLGEPVYKVSFWTPRTSLITLILVLLL IIGKHALPYMSGVLGALTIYVLLRGQMKWLVERKHWGRSWAASLLTVEAIFFFLIPILGI VLMLIDLFSTFDPESLNVLTTQAQEMIQQVEDRFGIELWSEENLQKLTSVSTSLVKGLLQ GMSSFFLNAFVILFLLYFMLRGYDHFESAVEELLPFTGKNKRTVSSETISIVKSNAIGIP VLALVQGVFAYIGYLIFGVEDALLFAVLTTFTTIIPVLGTMIVWVPMAIIMGINGDWLNA ILLGAYGFIVIGGVDNVARLLLQKQMANIHPLITIFGVFIGLSLFGFWGVIFGPLILSLI VLFINLYRHDYVPGSKAKPSASTDHQETKSLERLSQIVQNSGLSALNKSEQERYEKTHTD ENKPEGDE >gi|228307534|gb|ACLR01000176.1| GENE 52 42483 - 42689 135 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 21 56 1 36 58 64 94.0 2e-09 MHKGESLCCFRGPASVTYGGMLPSDLTLSALRFILSAKSGQSCLQDCETVDFCISLELSL TQRYEKRS >gi|228307534|gb|ACLR01000176.1| GENE 53 43230 - 43385 63 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 48 43 90 91 75 77.0 9e-13 MKLRKKQIKVRKNFFIPPWRIPIFYRGNFDFLGGVLSGSSKCVGVPRGVRG >gi|228307534|gb|ACLR01000176.1| GENE 54 43558 - 44694 1268 378 aa, chain + ## HITS:1 COG:AGc3441 KEGG:ns NR:ns ## COG: AGc3441 COG0468 # Protein_GI_number: 15889174 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 362 69 412 416 384 56.0 1e-106 MAKKNERTVVTPPITDVAAKMKALETTMGRIQKQFGKGAIMNMADDAVEDVSVIPSGSLT LDIALGVGGYPRGRIIEIFGPESSGKTTLAIHAIAEAQKLGGIAAIIDAEHAFDPTYAQA LGVDISRLWISQPDDGEQALDIAEQLIRSSAVDILVVDSVAALTPKAEIEGEMGDTQVGL HARLMSRAMRKITAAVSRSKTCCIFINQLRMKIGNGYSPTGPSEVTTGGNALKFYSSVRL DIRAYKQIKKGDDVVGKVTSVRVVKNKVAPPFRRAQFDILFGQGINRVGEIIDAATDMGI LKKSGSWFSYQGNNIGQGRDAVKELLDDNPELADEVAQQVMDQLAHEGKLHLSQDADEGE EGEAPDTTDQLVDEDFDI >gi|228307534|gb|ACLR01000176.1| GENE 55 44829 - 45302 481 157 aa, chain + ## HITS:1 COG:no KEGG:PRU_0934 NR:ns ## KEGG: PRU_0934 # Name: not_defined # Def: prophage PRU01 putative transcriptional regulator # Organism: P.ruminicola # Pathway: not_defined # 22 132 235 340 352 95 45.0 6e-19 MTALQIPKGWQRLTDRTDEAYTPERISVLREDEIFVFGSNLLGHHMGGAARTARRVFNAE MGVAEGLTGQAYALSTLGEDMRQVAPEALRASLGRLLRFALEHPKLTFYLTEVGCGIAGW PMETVRDLLWEAVRELSEEAYEQRAVPANLLIPKRFS >gi|228307534|gb|ACLR01000176.1| GENE 56 45483 - 46316 486 277 aa, chain + ## HITS:1 COG:no KEGG:PG0882 NR:ns ## KEGG: PG0882 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 267 40 294 309 108 32.0 2e-22 MPTQRHLIVPPYCQFAGPLSDRSGAVGEDPFDRDRYIAHLAAMKALSEALPSSLHYIEAH LPLDYWDWLPCETPAGAWRSSVAYTHLLDLAQRSPQELYNSLIQRKVRRATALGLRELWA EETNVATCAEMLVELCRKSLQRSGGDRLCASSLRRLVTAAVAHRQGAVLLLLSPQTEEPV AGAFVAYHAGTAYYIAGGQDRTPEGEDAMALLLDRLIVWSREAGCHTFDFEGSMQAGIAF FFRSFGAVPHPYLRLQAGRQTLPMRLQLRRYYLRYLY >gi|228307534|gb|ACLR01000176.1| GENE 57 46326 - 47717 1243 463 aa, chain + ## HITS:1 COG:MA4454 KEGG:ns NR:ns ## COG: MA4454 COG0726 # Protein_GI_number: 20093240 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Methanosarcina acetivorans str.C2A # 119 428 17 306 351 102 28.0 2e-21 MRHYEATEYILSFLLGDAIPLDISGKIRISRHAQMQRSPDYVAYCRPEEAKPYHRVVIVP SGFFDYEQYGRAESMPTLPLAEWHGMPLLFGEPREESLETPYGTRLIIYADLVASSYFLL SRYEEMYYRKRRDQHGRFPGRESLGYRAGFLERPLVDEYAAELRRLMSEIGLAVQPMEPG FSSVSLTHDLDQPYYSSGVRGFLRLLLKERLSLRAAYRNTFSRASEDLFFSYGRFLDWNV ETQRKCASPVRTIFFIKTPSPHPLDKPNYTLRNHKIAAIMRLARRRKVEFGLHLNLYCSE HPDAVEAAKEELEKELGEPVTCSRHHYLAVREPEDYNALLGAGIYHDYSMSYADVAGFRL GTSRPVRFINPQSMVVTDLILHPLTVMDYTLHDEKYMHLDYAEAERVALAMIDQTYRYHG EVTLLFHNENLLLDDPHIYHTRLYRALLRQIIKLSPATDIVGL >gi|228307534|gb|ACLR01000176.1| GENE 58 47731 - 48996 942 421 aa, chain + ## HITS:1 COG:no KEGG:PG0884 NR:ns ## KEGG: PG0884 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 5 421 3 414 416 247 36.0 6e-64 MLPHRILLLTDLLPPQFAPRITALLQRLPQQEWQVDVVSEEIRGDHQGSHGSVERTSSLP AHRLERVPLAPKRGRSLYALADALWQVKSRRFVRHLRQHYDLTQYELIVGMSYRTFPLPA VARLARQTGLPAVMDCRDIVEEYTPEGFLPAPLPRWLPLRRKLYSWLRARFIKARTEALR QASAIVTVSEWHRNLLQELHPEQRVLCIPNGYDEGLFVAQPERSPQLPLRIVYTGRLLSL EMRDPTLLLEALQEEALDKWVQRGAVEVHWYCDNASQQLLEQLLEAYSPSVRAAQHFHAM VPYAEVPKLLAQADMLLLLGRREQPEGPHGMVTTKLFEAMAMRRPILMVESDESVVAQIL RAHGGALAATDVAQVVAFVARHLERLERGEALPRETFTDHYQQYTRGAMAEAFVQLFRTL V >gi|228307534|gb|ACLR01000176.1| GENE 59 49097 - 49678 895 193 aa, chain - ## HITS:1 COG:CAC2575 KEGG:ns NR:ns ## COG: CAC2575 COG1592 # Protein_GI_number: 15895835 # Func_class: C Energy production and conversion # Function: Rubrerythrin # Organism: Clostridium acetobutylicum # 4 193 2 195 195 189 52.0 2e-48 MSTKSIKGTRTEQNLLKSFAGESQARNRYTYFAGVARKEGYRQIEAVFLETADQEKEHAK RFFKFLEGGELEITAAFPAGVIGTTAENLKAAAAGEHCEAEEMYPEFADIADEEGFKEIA AVYRNVAKAEHQHEMRYLKLLERVESGKYFERDEEIYWQCRNCGFVVKAKKAPAKCPACA HPQEFFEPMAENF >gi|228307534|gb|ACLR01000176.1| GENE 60 49841 - 51154 1902 437 aa, chain + ## HITS:1 COG:SPy1252 KEGG:ns NR:ns ## COG: SPy1252 COG4487 # Protein_GI_number: 15675212 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 1 429 1 444 446 290 44.0 4e-78 MHELICPNCNKPFSIDERGYAQLLEQVRGEAFDKALAERIALVEERSRQGQQLAVAQAEA TLKERLAQRDTELAQLQSRLDAMGEKSQAELRLALADKEKTITELHAELAQQESLRDNER LKAQAESQKALQAKEQEIVVLRSQAELQSKEAQLELSRLQEQHKEQEERLKEQVSFTEIS RRVSSTKMIGETLEQHCALEFEQKLRTFYPYAYFEKDNEVVGGTKGDFIFRDYAGEGEPE YISIMFEMKNEADETASKHRNEDFLKKLDEDRRKKGCEYAVLVSLLEPDSELYNGGIVDK SHRYEKMYVIRPQFFVPLITLLVSASRKSLDIRKQLFEAQQQSIDITHFEEDIEEFKDKF GRNYRLASDKFKKAIEEIDNSIKHLQKIKDNLIGSENNLRLANDKAEGLTIRKLTYKNPT MQAKFKALKALDQSSEE >gi|228307534|gb|ACLR01000176.1| GENE 61 51160 - 51747 721 195 aa, chain - ## HITS:1 COG:BS_purN KEGG:ns NR:ns ## COG: BS_purN COG0299 # Protein_GI_number: 16077719 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Bacillus subtilis # 1 186 1 186 195 132 39.0 4e-31 METIAIFASGNGTNAEALVHYLTNIDDISVALIATDNPHAGVLQRAERLGVRSLVFQRKE MANVAFAEQLREQYQVTAIVLAGFLGLVPESLLRAFPRRILNIHPGLLPDYGGKGMYGDR VHERVLEEHCKVSGITIHLIDGEYDRGSTLCEVRLAVHPDDTVDTLAERIHRLEHTYYPI VVADYLTRPDLTPLA >gi|228307534|gb|ACLR01000176.1| GENE 62 51946 - 52185 465 79 aa, chain + ## HITS:1 COG:aq_1717a KEGG:ns NR:ns ## COG: aq_1717a COG0236 # Protein_GI_number: 15606797 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Aquifex aeolicus # 5 79 3 77 78 69 56.0 2e-12 MNAEVESKVKDLIADKLNVELSEVTREANFTTDLGADSLDTVELMMAFEKEFDMTIPDEE AEGIKTVGDAIDYIEKQLA >gi|228307534|gb|ACLR01000176.1| GENE 63 52425 - 53678 1543 417 aa, chain + ## HITS:1 COG:sll1069 KEGG:ns NR:ns ## COG: sll1069 COG0304 # Protein_GI_number: 16329903 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Synechocystis # 1 417 4 416 416 395 49.0 1e-109 MQFNRVVVTGLGAITPIGNDAPTTWQNLLAGKSGAAPITQFDASKFKTQFACEVKGFNPE DHFDRKEVRRYDRYTQLALVATKEAIADSAVDLEHVDKNEVGVIISAGIGGLETFQEEIL QYDPERGPRFNPFFIPKMISDIAAGLVSIEYGFHGPNYSVASACASSTNAIIDAAIMIRL GKAKMMVAGGSEAAVTVAGIGGFNAMHALSTRNDSPETASRPFSASRDGFVLGEGAAILI LEEYEHAVARGAKIYAEFAGFGLSADAYHLTASHPEGLGAKLVMTRALEDAGMKPEDVDY INVHGTSTPVGDASEVKAIQSVWGDKAYDLNISSSKSMTGHLLGATGALEAMAIVKSIQE DVVTPTINHEPGDEDDQIDYKLNFTFDKAQKRTVNVAMSNTFGFGGHNACVIFKKIQ >gi|228307534|gb|ACLR01000176.1| GENE 64 53800 - 54609 903 269 aa, chain + ## HITS:1 COG:BB0705 KEGG:ns NR:ns ## COG: BB0705 COG0571 # Protein_GI_number: 15595050 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Borrelia burgdorferi # 32 258 13 242 246 105 32.0 1e-22 MRFFRTSRTRSLLRELGERWQHWWRKMRGGTSQRTPDLTSLFDRIGIVPVRTDLYLLAMR HRSCTIIGEGGEKLNNERLEFLGDAVLEASICTYLYHLHPTWDEGDLSKCKSSLVSRPVN NEVGRRLHLERYIIMVPSALDNSVDIYGNTVEALIGAIYLDQGYARTQDFVRDYILPTYR DMREHTVASIQNYKSELIEWVQKHHLSHEFRLEEHQTMPHDHFIYSVWIDGKPVGRGAGS SKKRAQQEAARDTLELLKQAYSAIQSRTS Prediction of potential genes in microbial genomes Time: Fri May 27 09:55:37 2011 Seq name: gi|228307528|gb|ACLR01000177.1| Porphyromonas uenonis 60-3 deg1118640599654, whole genome shotgun sequence Length of sequence - 991 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 09:55:42 2011 Seq name: gi|228307513|gb|ACLR01000178.1| Porphyromonas uenonis 60-3 ctg1118640599750, whole genome shotgun sequence Length of sequence - 17859 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 6, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 17 - 223 365 ## COG0541 Signal recognition particle GTPase + Term 295 - 348 16.3 + Prom 285 - 344 3.9 2 2 Op 1 . + CDS 387 - 644 250 ## + Term 742 - 778 -0.4 + Prom 775 - 834 4.2 3 2 Op 2 . + CDS 893 - 2089 1711 ## PG1788 cysteine peptidase, putative + Term 2111 - 2166 10.4 4 3 Tu 1 . + CDS 2424 - 3455 781 ## COG0739 Membrane proteins related to metalloendopeptidases + Term 3539 - 3569 -0.9 + Prom 3505 - 3564 1.7 5 4 Op 1 . + CDS 3587 - 5089 1087 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 6 4 Op 2 . + CDS 5167 - 7218 2607 ## COG0143 Methionyl-tRNA synthetase 7 4 Op 3 3/0.000 + CDS 7231 - 8397 1060 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 8 4 Op 4 . + CDS 8416 - 9492 998 ## COG0673 Predicted dehydrogenases and related proteins 9 4 Op 5 . + CDS 9509 - 11266 1725 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 10 4 Op 6 . + CDS 11304 - 12092 617 ## PGN_0283 probable exonuclease 11 5 Op 1 . - CDS 12071 - 12847 623 ## BDI_3508 putative cytochrome c biogenesis protein 12 5 Op 2 . - CDS 12853 - 16338 3921 ## PGN_0022 hypothetical protein - Prom 16365 - 16424 3.8 - Term 16690 - 16744 12.2 13 6 Tu 1 . - CDS 16767 - 17132 618 ## PROTEIN SUPPORTED gi|228470757|ref|ZP_04055606.1| ribosomal protein L19 - Prom 17328 - 17387 5.6 Predicted protein(s) >gi|228307513|gb|ACLR01000178.1| GENE 1 17 - 223 365 68 aa, chain + ## HITS:1 COG:RSc2811 KEGG:ns NR:ns ## COG: RSc2811 COG0541 # Protein_GI_number: 17547530 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Ralstonia solanacearum # 1 56 402 457 476 63 53.0 8e-11 MTPEERAKPSILDGSRRKRIADGSGTSVAEVNRLIQQFDQVSKVMRKMQGGGLGRMQAKM QKKNKKRR >gi|228307513|gb|ACLR01000178.1| GENE 2 387 - 644 250 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQDEFIHSTLSRKSSNSSVEIFEFPVRNKKILRNFEIFLPKFHFILPNFYLPVPWGIFDR SVELSDFLGRDCNQQRCRSSYKVSL >gi|228307513|gb|ACLR01000178.1| GENE 3 893 - 2089 1711 398 aa, chain + ## HITS:1 COG:no KEGG:PG1788 NR:ns ## KEGG: PG1788 # Name: not_defined # Def: cysteine peptidase, putative # Organism: P.gingivalis # Pathway: not_defined # 6 398 30 422 423 562 67.0 1e-159 MRQFSLLLLTLLSSLVMVAQKPQTSSESNEFTIIKQLPITSIKDQANSGTCWSYSTTGFL ESEILRKGGPEVDLSEMFVVNHTYRDKAEKYVRLHGKGNIAQGGSFYDVLYVFGNYGAVP EELMTGLNYGTKKNAHGELEAVLKGMLDAVVANHNGRLSTAWKGAFNKVVDTYLGELPKE FTYQGKRYTPKSFAESLGINTSDYVSLTSFTHHPFYTSFPIEIEDNWRWSSSWNLPINEL MQVIDNAIEKGYPIAWGADVSEVGFTRDGIGVLADVDAIETKGSDQARWVGLSYSDKAAE IRRMINSADCPEIEPTQEFRQEGFDNYTLTDDHGMVMVGKAKNQNGRIFYMIKNSWGESG KYNGIWYISKNYVAGRTMNIVVHRDAIPAAIAKKLGLK >gi|228307513|gb|ACLR01000178.1| GENE 4 2424 - 3455 781 343 aa, chain + ## HITS:1 COG:BH1600 KEGG:ns NR:ns ## COG: BH1600 COG0739 # Protein_GI_number: 15614163 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Bacillus halodurans # 135 341 47 251 303 108 33.0 2e-23 MISKSKSFVAFVGLIFVACTQLAAQTPHKTSSPPLRRVSPTRVVTARDSLGIRNLLADGY NIMTARDAETRISNAEMERALEREALEYPAIDLYGEDSWTDWVNPFAGKSSPRIPATYNI DCSGFVMPLEGTMRVTSNYGYRARYRREHKGIDLALRTGDDVRAAFDGKVRIRGYERGGY GNYIVIRHPNGLETVYGHMSRCIAQEGQIVRAGEVIGKGGSTGRSTGPHLHFETRFLGID INPAHIIDFGVGAPQSDYYTFVAPRGYKTYAYEESKASSDTQYKAKAKKNRVSASRAPRI YRVKKGDTLSSIAKKTGTPVSRLCKANNMSSRAVLRPGQSLKY >gi|228307513|gb|ACLR01000178.1| GENE 5 3587 - 5089 1087 500 aa, chain + ## HITS:1 COG:PA3047 KEGG:ns NR:ns ## COG: PA3047 COG2027 # Protein_GI_number: 15598243 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Pseudomonas aeruginosa # 63 472 62 457 476 97 27.0 5e-20 MQLRSTTLYAILLLLLPLQGSAQEDTLNVFQTLELLQQAEQRGEARYGVSVWRIDQTKPA LSYHASERFTPASVTKIFSSATALIVLGADYQFPTEIGYRGTITSEGVLDGDLIIVGHGD PSLESKHYPRRKGIFYDQVYLALQKAGIRQIRGRIVVDASAYCDEGYLEAWSRGDWGKRY APALYGVNLCDNIMQVGISAQDVARGASEPSYLHPATPGHAWQIDIQLVKRGNLLAISAD RESRTTRRLSGRLARGSSKRQVIACDLSNPAMALALQLAEHLQQRGIELSECRSVAYYDR SAPVLTTLLDIYLSPHLSELIRTCNFHSVNLYAEALLRSIGNHFGSVQQGECFSTHQALK REMNYWRETCALPADQLELYDGSGLSPRSKLSPYALTAALRQVYQLPLPTSDPFILSLPQ VGRQGTVRSLMPASRITAYFKSGSIQGVQNYAGYVSYKGHTYCVSLLANNMRHRPTTRST MRRVLETLFPPLPASSTSKP >gi|228307513|gb|ACLR01000178.1| GENE 6 5167 - 7218 2607 683 aa, chain + ## HITS:1 COG:PAB2364_1 KEGG:ns NR:ns ## COG: PAB2364_1 COG0143 # Protein_GI_number: 14521189 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Pyrococcus abyssi # 8 549 3 553 562 535 47.0 1e-152 MSTQQFKRTLVTTALPYANGPVHIGHLAGVYVPADIYVRYKRMKGDEVLFIGGSDEHGVP IAIKAKAEGVSPQEVVDRYHALIKESFARLGIDFDIYSRTTSETHEKTASAFFTKLYESG KLIEQTSEQYYDPEAKQFLADRYITGTCPHCHNERAYGDQCEACGTSLSATDLIDPHSAI SGAKPELRETKHWYLPLGDYESFLREWILEGHKEWKPNVYGQCKSWLDLGLQPRAVTRDL DWGIPVPLQGAEGKVLYVWFDAPIGYISNTKELLPDSWRTWWCDPETRLIHFIGKDNIVF HCIIFPAMLKAEGSFNLPDNVPANEFLNLEGDKISTSRNWAIWLHEYLDEMPGKEDVLRY VLTANAPETKDNDFTWRDYQARNNNELVAIYGNFVNRALVLTHKYFDGKVPPLGRLTEID EEMLREVAAIPAELDDQLEHFHFREALKTAMQLARIGNKYLADTEPWKVIKSDPDRVATI LHLALQLVGNLTIAFAPFTPFSTRRLLAMLQVGEEGFAFSRFGATDLLPEGHQLGTPELL FEKIEDDVIQAQLDKLAAIKKLNEEQSRHPEALLEDVPFDTFTKSDMRAGRILACEKVPK ADKLLRFSIDDGMGGRTIVSGIAQYYKPEELVGKTVAFVANLPVRKIRGVESQGMIISVE DYKTGRLQVVTLPDTIAPGSKLV >gi|228307513|gb|ACLR01000178.1| GENE 7 7231 - 8397 1060 388 aa, chain + ## HITS:1 COG:alr3012 KEGG:ns NR:ns ## COG: alr3012 COG0399 # Protein_GI_number: 17230504 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 3 388 8 382 382 228 35.0 1e-59 MRIPLVNLPEEHRPYQAELDRGIGRVVASGGYIGGEEVHAFEEGLAAYLGLAPWSVISCG NGSDALLLALAALELPRGGEVIIATHNYVAAAEVVCHLGLRPVWADVMPSLSSDGRVSFQ MNGSLDYLESLRTPRTVALIAVNMYGMPCPAVELAHFCKRHQIPWIEDNAQGMGGVGEIA SGVTKATAPLGTRATIGTTSFFPTKPLGCMGDGGAAFVPHDQQLAERLRQLANHGQRTRY QYERCGYNSRLDALQAAVLRVKLRHLDEANRRRSLLADRYDELLADLPMVRRPKRSIGQP EALYLYTICVPSDKRDGLLNELRTAGIDARVYYPQMLHQIAAYSDGSSEASCPVAEEIQK TMLSLPIAPTTTPEQIREICERIRQFLL >gi|228307513|gb|ACLR01000178.1| GENE 8 8416 - 9492 998 358 aa, chain + ## HITS:1 COG:TM0585 KEGG:ns NR:ns ## COG: TM0585 COG0673 # Protein_GI_number: 15643351 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Thermotoga maritima # 20 352 3 335 360 148 30.0 2e-35 MTANHSDLTTFALKPLHSPLRWVVVGCGHIGRRHMEHISKHPQTQLVGMVDVLPASECGA AQFAEIPFYQSVEELLERGGETFDVASICVPNGLHYPIALELIKAGKSLLIEKPAVLHPD EGEELIALAKAHGCHLYSVLQNRFTPVSAWLHQVIKEKRLGKLYQIELQCLWNRDERYYL PRRWHGDLELDGGTLFTQYSHFLDLLIWCFGMPEVQGGSFYNYNHQTMVDFEDSGVVQLT FPQDTTGLLTYSTAVYGTNCGVRLTVLGERGCIVLDGPFMNQLTHCVIDGYDRPDLGESE PGNAYGAYSGSAQNHHFVIDHTARALLGDPTAQAVEIEDALRVVRLIRNIYQHNPYLS >gi|228307513|gb|ACLR01000178.1| GENE 9 9509 - 11266 1725 585 aa, chain + ## HITS:1 COG:CAC0353 KEGG:ns NR:ns ## COG: CAC0353 COG0737 # Protein_GI_number: 15893644 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Clostridium acetobutylicum # 34 560 541 1077 1193 213 29.0 7e-55 MNQLQHRTLLYCLVALLLLGSFASCKKTERETHTIHILHTTDVHGNILGYDFVQDTCTPS GLARVSTYVAQVRKEFPTSTLLFDGGDVLQGNAAVYYSNFVDTLRTHFVSDAMTLLGYDA AVVGNHDLEATPSVYRRWQRDMATPLLAANIIHSDGPLKGKPYYSPYSVHTIDGVKVAVL GLITPAVPQWIPQSSYEGMTFADPIATAHKWIPTIQEHVHPDLLIVLMHSGLGDGQDKED VALQMARTVSGIDLILYGHDHQANQTTERSPSGSSVLLINPGSHAKNVADVTVTITKQSD KVVDKKFQGEIVPMADVPVDSAFVSYFADFADTVRSFIAEPITLLTEPLVGVDALFGPSA YISLLHQLQLDLSEADISFSAPHRLSLAQRADTLRVRNFFDIYPYENYLYKLRLSGQEIH DYLEYSYGLWCGPEASSGEHLLYLKDQATEQHFPTVNPTFNFSAAAGIDYTVDLRKPQGK RVTIEQLSDGHPFSVDSVYTVAVNSYRAIGGGGHLTQGAGLSPDELHQRVVWISPHDLRY HLIEWARKHQPLTPPHYSNWAFIPKEQATVAIARDRHIIEESLTK >gi|228307513|gb|ACLR01000178.1| GENE 10 11304 - 12092 617 262 aa, chain + ## HITS:1 COG:no KEGG:PGN_0283 NR:ns ## KEGG: PGN_0283 # Name: not_defined # Def: probable exonuclease # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 7 262 9 258 260 85 27.0 2e-15 MTWVDLLLLLILACGITTFGRKRLRKHNPVYKGVERDFASHCVLSIEESPLLQLGSAPAG ARPRYLVVDTETVCYLHDTLDKEKFASIGTPLLASLSWLLLDEELRVVRSEDHLLLSGVP ITSEATDYHQLTTEFVAGHGETPQAVLELFLRDLESVQMLVGHSLAFHLAVLAHDLQHYQ LPCESLGARRQFCTMRQGINYLISHYQADPLQTRISLESLYGKLLWGREELEIIYQLKSR HDVVLATHCFIKLYRDQPTAAS >gi|228307513|gb|ACLR01000178.1| GENE 11 12071 - 12847 623 258 aa, chain - ## HITS:1 COG:no KEGG:BDI_3508 NR:ns ## KEGG: BDI_3508 # Name: not_defined # Def: putative cytochrome c biogenesis protein # Organism: P.distasonis # Pathway: not_defined # 8 247 8 232 234 101 32.0 3e-20 MQADILALVTSSTPFVAVVVMALLVAINPCPLATVVSSLLFLTGRQTNRRRGWWLTTLYA LGRALLYFSLGLLSAWLLRTSIQTLQLQAQILYGLEHWLGPLIILLGVLLWMFGHHDHHD HQHEEQTHQAEELDHEHEQPLGRQGAWSWRALWLGFSSALFFCPATGLIYFGMLVPMTAQ ADGAVGLLYLGLFALLTASIAYPVYGLIRMGLSRLAHFAGDIQRWRKWLSVGISLLFIVM GVVITLVHLLHGHEAAVG >gi|228307513|gb|ACLR01000178.1| GENE 12 12853 - 16338 3921 1161 aa, chain - ## HITS:1 COG:no KEGG:PGN_0022 NR:ns ## KEGG: PGN_0022 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 29 1160 28 1155 1158 705 36.0 0 MRHRLLHYIYRPLSLLLVTLLAGLLGLTAQSSASSPLSEGHWVRLSVTRTGVYKVTFATL REAGIANPAEVRLFGRGGAMLSEVLEDNSLQLTPVPAYVANDAVYFYATGVTEWIPELSR QTFRHQQNIYSNQGYYLATDRTDLPVQRIESQGAQQATEPAVRTSFLAHELYEQDRHSLR ASGRLLFGEPLGGHPLTVPLTLPSPLVSDAEGDLKVAYVGLPDKDQSLELTVQLGGETYK DIIKRSEDETSASTYLAGIYHAKSFAAKLPSEAQRVETQLQIAPAGRQSYLDYLTLVAPV ALQYGGKGQLTFRNYSATPGAIASHRIEVTGSASALQLWGRTPEGQVASLPIAEQDGAVT FTGAVTSEAGIPVEYTLFALADAYPVEQVVALPHGGVRLDTVPDYLMITTEALRPAAERL ASYHREHSGLRVQVVTQQELFDEYNGGTPDATAYRLMLWDYKRRYEAEHGAESYHPLLLL MGDGAYDNRKVSQDWSARDFQLTEFLLTYQGENSTNVYSYSTDDYFGLLTEGLRGVGVGA QPLSVGIGRLPIRTLEEAEAVVDKIIRYDSEQVPGVWRTRACYVADNMDGYSHLGEADGI AQLMERLQPELMVSKVYMDAYAHKNVGGRTSVPDARRKLMDELQKGLLLLDYTGHGGPAA WSDEQILTQADIVRFDYPHLPVWITATCDFTNYDHPQTSAGESAMLNPTSGAIALYTTTR VVMNLNNEQMNRALHESLFTPQADGFLRPMGIVMRDAKNALTDDTMNKLNFFLLGDPALR LRMPAYETVITELAGVSLDKLSEGESVPLHAMDSVQVRGYVASSKGVVQGDFTGRLFVTV FDAKAPVKTHIDNAPDKDPEKITSFEDYPGMLYAGVAEVKEGHFDFSFVVPKDLPYSGGN GKINLYAYSDAKGGEPYEAMGVSHAICVKPGVGEHSVVDTVPPEIRELYLGHPNFSVDNP IGSTPLFVATLADASGINLSGTGVGHNMTLVVDGREDLTFNLSSSYTASEMEAGVGRVLY LLPELPDGDHTATFTVWDVCNNVTERSFAFRVRDGQAPTVVESHARPGVLTADDPLIVEV YNNAPGVEVDVTIELYDYRGALVALSPQMVARSGHDTPALIRWEPKLQSGGALLPGLYIY RLRMTQGDSVPAYTSGKIVVR >gi|228307513|gb|ACLR01000178.1| GENE 13 16767 - 17132 618 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470757|ref|ZP_04055606.1| ribosomal protein L19 [Porphyromonas uenonis 60-3] # 1 121 1 121 121 242 100 1e-63 MDFIKLVEEDFKSGKQLPKFAPGDTIVVDYRIKEGNKERIQKFRGTVIRISGHGDQRRFT VRKISDGVGVERIFPYNSPFIEEIHVERHGKVRRAKLYYLRNLRGKAARIRERRTLSASV K Prediction of potential genes in microbial genomes Time: Fri May 27 09:56:38 2011 Seq name: gi|228307436|gb|ACLR01000179.1| Porphyromonas uenonis 60-3 ctg1118640599773, whole genome shotgun sequence Length of sequence - 87977 bp Number of predicted genes - 79, with homology - 75 Number of transcription units - 31, operones - 16 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 385 - 421 2.6 1 1 Op 1 . - CDS 499 - 1674 844 ## PG1214 hypothetical protein 2 1 Op 2 . - CDS 1684 - 2382 773 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein 3 1 Op 3 . - CDS 2398 - 3426 1301 ## PG1212 TPR domain-containing protein 4 1 Op 4 . - CDS 3438 - 5525 2602 ## COG0021 Transketolase - Prom 5617 - 5676 3.3 - Term 5797 - 5825 0.6 5 2 Tu 1 . - CDS 5862 - 6872 352 ## COG4886 Leucine-rich repeat (LRR) protein - Prom 6956 - 7015 4.4 6 3 Op 1 . - CDS 7077 - 7385 100 ## 7 3 Op 2 . - CDS 7455 - 8585 1367 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 8 3 Op 3 . - CDS 8616 - 10430 2375 ## COG0018 Arginyl-tRNA synthetase 9 3 Op 4 . - CDS 10448 - 11521 1085 ## BVU_2793 hypothetical protein 10 3 Op 5 . - CDS 11547 - 12551 1064 ## COG1284 Uncharacterized conserved protein - Term 12793 - 12840 -0.9 11 4 Op 1 . - CDS 13069 - 13602 685 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 12 4 Op 2 . - CDS 13606 - 14574 375 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 13 5 Tu 1 . - CDS 14693 - 16348 2151 ## COG4690 Dipeptidase + Prom 16315 - 16374 2.8 14 6 Tu 1 . + CDS 16398 - 16637 142 ## + Term 16789 - 16821 1.2 15 7 Op 1 . - CDS 16783 - 17100 696 ## COG0526 Thiol-disulfide isomerase and thioredoxins 16 7 Op 2 . - CDS 17158 - 20976 4563 ## COG0587 DNA polymerase III, alpha subunit 17 8 Tu 1 . - CDS 21192 - 22118 1280 ## COG0598 Mg2+ and Co2+ transporters - Prom 22301 - 22360 4.2 - Term 22628 - 22675 0.0 18 9 Tu 1 . - CDS 22921 - 24231 1631 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase - Prom 24357 - 24416 2.8 19 10 Op 1 . + CDS 24403 - 25356 1015 ## COG0501 Zn-dependent protease with chaperone function 20 10 Op 2 . + CDS 25362 - 25904 612 ## COG2109 ATP:corrinoid adenosyltransferase 21 10 Op 3 . + CDS 25920 - 26921 1041 ## COG2234 Predicted aminopeptidases 22 10 Op 4 . + CDS 26938 - 27357 551 ## COG2166 SufE protein probably involved in Fe-S center assembly 23 10 Op 5 . + CDS 27368 - 28309 982 ## COG4866 Uncharacterized conserved protein 24 10 Op 6 . + CDS 28312 - 29298 885 ## PGN_1729 probable acetyltransferase 25 11 Op 1 . - CDS 29309 - 29509 199 ## gi|228470820|ref|ZP_04055668.1| hypothetical protein PORUE0001_1741 26 11 Op 2 . - CDS 29586 - 31580 1495 ## PG0081 hypothetical protein 27 11 Op 3 . - CDS 31601 - 32203 673 ## COG0009 Putative translation factor (SUA5) 28 11 Op 4 . - CDS 32210 - 33067 1211 ## COG0648 Endonuclease IV - Prom 33097 - 33156 3.2 + Prom 33462 - 33521 2.7 29 12 Tu 1 . + CDS 33573 - 35924 2597 ## COG1629 Outer membrane receptor proteins, mostly Fe transport + Term 35954 - 36003 10.6 - Term 35945 - 35988 2.2 30 13 Op 1 . - CDS 36014 - 37549 1305 ## gi|228470807|ref|ZP_04055655.1| O-antigen polymerase family protein 31 13 Op 2 . - CDS 37564 - 38541 988 ## CA2559_13223 putative LipD A biosynthesis related exported protein 32 13 Op 3 . - CDS 38528 - 39763 656 ## PROTEIN SUPPORTED gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 33 13 Op 4 . - CDS 39773 - 40510 923 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 34 13 Op 5 . - CDS 40574 - 41713 746 ## PROTEIN SUPPORTED gi|149915191|ref|ZP_01903719.1| 50S ribosomal protein L27 35 13 Op 6 . - CDS 41721 - 42305 761 ## COG0563 Adenylate kinase and related kinases 36 13 Op 7 . - CDS 42362 - 42904 604 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 43037 - 43096 2.2 + Prom 43335 - 43394 2.3 37 14 Tu 1 . + CDS 43414 - 43644 127 ## + Prom 43704 - 43763 2.4 38 15 Op 1 . + CDS 43828 - 44022 227 ## BVU_3346 pyruvate carboxylase subunit B 39 15 Op 2 . + CDS 44110 - 44427 427 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase 40 15 Op 3 . + CDS 44489 - 45697 1858 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase - Term 45978 - 46020 13.3 41 16 Tu 1 . - CDS 46081 - 46779 826 ## PG1823 hypothetical protein + Prom 46889 - 46948 3.8 42 17 Op 1 . + CDS 47181 - 48896 1901 ## COG0793 Periplasmic protease 43 17 Op 2 . + CDS 48961 - 50640 2402 ## COG2985 Predicted permease 44 17 Op 3 . + CDS 50663 - 50968 515 ## gi|228470775|ref|ZP_04055623.1| conserved hypothetical protein 45 17 Op 4 . + CDS 50976 - 51521 666 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 46 17 Op 5 . + CDS 51526 - 52344 964 ## COG0388 Predicted amidohydrolase 47 17 Op 6 33/0.000 + CDS 52351 - 53217 974 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component 48 17 Op 7 35/0.000 + CDS 53236 - 54246 1254 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 49 17 Op 8 . + CDS 54243 - 55037 213 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein + Term 55128 - 55173 2.1 - Term 55377 - 55435 10.1 50 18 Op 1 . - CDS 55493 - 57289 3046 ## PROTEIN SUPPORTED gi|228470785|ref|ZP_04055633.1| 30S ribosomal protein S1 - Prom 57319 - 57378 2.3 51 18 Op 2 . - CDS 57423 - 59339 1647 ## gi|228470800|ref|ZP_04055648.1| hypothetical protein PORUE0001_1766 - Prom 59404 - 59463 2.2 - Term 59472 - 59513 0.7 52 19 Tu 1 . - CDS 59574 - 59810 221 ## - Prom 59941 - 60000 2.3 + Prom 59889 - 59948 2.0 53 20 Op 1 . + CDS 59968 - 60909 1352 ## COG1705 Muramidase (flagellum-specific) 54 20 Op 2 . + CDS 60966 - 62126 1249 ## COG0150 Phosphoribosylaminoimidazole (AIR) synthetase 55 20 Op 3 . + CDS 62164 - 63270 1539 ## COG0216 Protein chain release factor A + Prom 63282 - 63341 1.6 56 21 Op 1 . + CDS 63384 - 63965 390 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Prom 64026 - 64085 1.6 57 21 Op 2 . + CDS 64131 - 65129 1321 ## COG0039 Malate/lactate dehydrogenases + Term 65176 - 65219 13.1 58 22 Tu 1 . - CDS 65619 - 66176 617 ## Pcar_0370 hypothetical protein 59 23 Tu 1 . - CDS 66386 - 67666 1453 ## COG0148 Enolase - Prom 67819 - 67878 5.0 + Prom 67775 - 67834 2.2 60 24 Op 1 . + CDS 67938 - 69845 2619 ## gi|228470818|ref|ZP_04055666.1| hypothetical protein PORUE0001_1774 + Term 69854 - 69895 10.3 61 24 Op 2 . + CDS 69915 - 71030 1163 ## gi|228470831|ref|ZP_04055679.1| hypothetical protein PORUE0001_1775 + Term 71061 - 71109 13.7 - Term 71214 - 71258 12.2 62 25 Op 1 . - CDS 71345 - 72364 1562 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 72411 - 72470 3.4 63 25 Op 2 . - CDS 72537 - 72755 145 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 - Prom 72904 - 72963 4.1 + Prom 72860 - 72919 7.5 64 26 Tu 1 . + CDS 73026 - 75290 2453 ## LLO_3002 transmembrane protein (fibronectin III domain and GP5 C-terminal repeat) 65 27 Tu 1 . + CDS 75428 - 75682 270 ## gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 + Prom 75693 - 75752 2.5 66 28 Op 1 . + CDS 75782 - 76108 370 ## COG1862 Preprotein translocase subunit YajC 67 28 Op 2 . + CDS 76139 - 77152 1054 ## PGN_1486 hypothetical protein 68 28 Op 3 . + CDS 77197 - 77850 475 ## COG0237 Dephospho-CoA kinase 69 28 Op 4 . + CDS 77865 - 78563 448 ## gi|228470792|ref|ZP_04055640.1| hypothetical protein PORUE0001_1782 70 28 Op 5 . + CDS 78604 - 79353 832 ## BDI_3054 uroporphyrinogen-III synthase 71 28 Op 6 . + CDS 79350 - 80108 498 ## COG0759 Uncharacterized conserved protein 72 28 Op 7 . + CDS 80105 - 80833 504 ## PG0199 TatD family protein 73 28 Op 8 . + CDS 80870 - 81691 1099 ## mru_1668 hypothetical protein 74 28 Op 9 . + CDS 81688 - 82077 545 ## Apre_0734 HIRAN 75 29 Op 1 . - CDS 82265 - 82780 315 ## gi|228470801|ref|ZP_04055649.1| hypothetical protein PORUE0001_1788 76 29 Op 2 . - CDS 82767 - 82979 328 ## BDI_0444 hypothetical protein 77 29 Op 3 . - CDS 82964 - 83431 322 ## COG3023 Negative regulator of beta-lactamase expression 78 30 Tu 1 . - CDS 83538 - 84092 675 ## PGN_1986 DNA-binding protein, histone-like family - Prom 84172 - 84231 4.3 + Prom 84536 - 84595 3.5 79 31 Tu 1 . + CDS 84680 - 87977 299 ## COG4886 Leucine-rich repeat (LRR) protein Predicted protein(s) >gi|228307436|gb|ACLR01000179.1| GENE 1 499 - 1674 844 391 aa, chain - ## HITS:1 COG:no KEGG:PG1214 NR:ns ## KEGG: PG1214 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 5 388 22 406 412 119 29.0 1e-25 MRTPLFVCNIGHEVALEAGDPLHYTPPRIIRQMRSALWSLPLWATPSWLEDTTWWVHPFG KSLSPYLTDRELSHIAKDGVGDAEITLWGHERGLAHSLAKLYGISAGEACSELPQELMPC WTRVASVRFFENYSSVSWRSRVAMITEIGALAELLTHGSCLVKLPFSSSGRGLWRINQLD NQLEETLRKLLQRHRTLLVEPLLNKQQDYGAEYYINKEGEVQFVGLCAFETDDQGRYLES LCQDPEETLRQLADSLNDPDELQQALEQHRTYLSREVAPYYQGPVGIDLLTYRPDTLSPS LALHPWVEINLRYTMGHYALDLYRERTPQGSPNQYRFGILSAPRAKALLATAAAPTLDAT GRLRSGLLPLTSTNLDTDLSTASHLAYLRTL >gi|228307436|gb|ACLR01000179.1| GENE 2 1684 - 2382 773 232 aa, chain - ## HITS:1 COG:BH0863 KEGG:ns NR:ns ## COG: BH0863 COG3341 # Protein_GI_number: 15613426 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Bacillus halodurans # 5 232 3 196 196 156 40.0 3e-38 MSTKQRKWYVVWEGYRPGVYDNWRDCQLQVVGYQGAKFKSYPTSEQAQEAFELGYQEGRQ LGQQQRVAKPESNHLQVQHSVEQAPDQLIGDKIAPAGFINHSIAVDGACSSNPGVTEYRG VYTFSHAELFRAVIPWGTNNIGEYLAIVHALALMEQGKLPPLPIYSDSKVALGWVAQARC RTRLDSTDPRSAKTYELIARATHWLKTHTFRVPLLKWDTVAWGEIPADFGRK >gi|228307436|gb|ACLR01000179.1| GENE 3 2398 - 3426 1301 342 aa, chain - ## HITS:1 COG:no KEGG:PG1212 NR:ns ## KEGG: PG1212 # Name: not_defined # Def: TPR domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 3 342 8 337 337 104 29.0 5e-21 MGLFSRFKKSSKKSPDSTEVVEQETIDASQEVAEQSTEQVSASRADTLKANTLKFDALRA LKIGEVDFAIRALHTSLEEIDDPECRLYLAQALQRKPDLAGSMAELTTILEAYPDYPMAL YEATKVANGLDQHSETIAYAERALATELETVEQAELYRMKAQAQLALGESEQALATIDQA LQLTDEVPLYWLIKVKVLIALERWEEALAVALETAEKFPEEERAYLYEGLITYHEGDKER AERAFRQVVETDPFNVEGYMHLTHLVEELRGKEAAADEMEQALEMIPQPTRALLDYAALL YKECDRTEQYKGVQQMLAELPEDAETKTGEVNFAGLYAGGFY >gi|228307436|gb|ACLR01000179.1| GENE 4 3438 - 5525 2602 695 aa, chain - ## HITS:1 COG:BH2352 KEGG:ns NR:ns ## COG: BH2352 COG0021 # Protein_GI_number: 15614915 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Bacillus halodurans # 19 693 5 662 666 401 36.0 1e-111 MSNEMTDQTLSTQEHPMSIAERAADNIRALAISMVERAKSGHPGGAMGGADFIQVLFSEQ LRYDPRHPEHPARDRFFMDPGHMSPMLYAQLALAGFFTMDELVAFRSWGSPTPGHPELCR SRMIENTSGPLGQGHTYAVGAAIAAKFLQHRLGDKLMPQRIFAFISDGGIQEEISQGAGR IAGDLGLDNLIMYYDCNDIQLSTRVEDITAEDVAAKYDAWGWNVFEVPGNDPAALSQVLR DAIETSEETGAPTLIIGYTNMAYKAVDEEGNPLANLIATHGQPISKAGASYAKTMEALGA DPDNPFTIYKDVAAFYAERREELIAYWDGQYKVQEEYKKAHPDQAKLYDRWFAAEPTYDV AWQEIAQKANQATRAASATVLGELAKRVDNMIVASADLSNSDKTDGYLKGTKALEADDFS GKFLQAGVSELTMAAICVGITLHGGMRAACGTFFVFSDYMKPVVRMAGLMEQPVIFIWSH DSFRVGEDGPTHEPVEQEAQIRLLEHLHNHSGRRALQVLRPADVHEATVAWQMAMENLHT PTALILSRQNIQDLPNPTYERACQLKHGAYVVSDTTPAGETPDLTLIASGSEVSTLVQAA ELLKGKGHKLRIVSVPSEGLFFDQPATYRESVIPAKGARFGLTAGLPVTLLRLVGDMEHI HGLESFGFSAPYTVLDEKLGFTAEAVAQRIEELCR >gi|228307436|gb|ACLR01000179.1| GENE 5 5862 - 6872 352 336 aa, chain - ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 85 250 125 290 292 136 54.0 5e-32 MSKHLRIWLFVLLSTLLTSTTLPAEGVITMTTSKAVGETIELRIEANGNVTIEGAQYTGE TGYLNLKSYRLTNQTISIRGDVTELDCSTNELISLDVSKNTALTELACIDNQLTRLDVSK NTALTMLDCFSNQLISLNVSKNTALEVLDCSYNQLTSLDVSQNTALTDLDCSNNQLTSLN VSKNRALTDLKCNNNQLKSLDLPKNPALTTLYCSYNQLTSLNVSKNPALTELACLANQLT SLNVSKNTALTALYCYENQLTNLNVSGCISLRDLDCSSNYINGKAMTKLVNSLPNRRRKS SGRISLVDRSSKKRDKNRCSAADVTTVRRKNWEVAP >gi|228307436|gb|ACLR01000179.1| GENE 6 7077 - 7385 100 102 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDNGNPPPRNKKNLRNFEIFLPKFHFILPNFYFPVPWGNFVPSLTLPDFLPRRVTSVRTH GTSNPCRDARSVRPLCQRLQQPLVLTGTDAQIVRPDKSLPVR >gi|228307436|gb|ACLR01000179.1| GENE 7 7455 - 8585 1367 376 aa, chain - ## HITS:1 COG:BB0682 KEGG:ns NR:ns ## COG: BB0682 COG0482 # Protein_GI_number: 15595027 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Borrelia burgdorferi # 14 372 2 350 355 292 40.0 8e-79 METTLYTALPRDSRIALLASGGVDSSVAMHLLVEAGFRPDLYYIRIGMQDEDGSFLDCPA EEDIELVTLLARRYDLHLEIVDLHQVYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFGAF EERCGASYDYIATGHYATIRQTEDGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFPIGH LPKEEVRRIALEAHLVNAQRKDSQGICFLGQIDYNDFIERYLGTQTGDIIDHETGEKIGE HRGYWFHTIGQRKGLGLSGGPWYVVAKDVEHNVLYASRGYDPKTQYGTIIETEEMHWLTT DPWLWTKTPSDSPLEVTFKIRHTPDFTAGRLEHLPSGGYQLVSSVPIQGIAAGQFATIYD PQRQLCWGSAPIRSGR >gi|228307436|gb|ACLR01000179.1| GENE 8 8616 - 10430 2375 604 aa, chain - ## HITS:1 COG:TP0831 KEGG:ns NR:ns ## COG: TP0831 COG0018 # Protein_GI_number: 15639817 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Treponema pallidum # 39 604 43 589 589 492 46.0 1e-139 MSLYRHLSEAIASTLHTLYDLTTTADEITLTATRPEFEGHVTFVVFPYLKASRKSPQETA ETIGAKLQEQTDLIASYGVVKGFLNLTLTDSAWLAALREIAETPHYGHITPTEQSPLVMI EYSSPNTNKPLHLGHVRNNLLGYSLAQILEASGHRVVKTNIVNDRGVHICKSMLAWLRWG NGETPESSGKKGDHLIGDYYVRFDKEYRAELAQIRAEHPDWSDEEVEAKSQLMADARQML RQWEQGDPEVRALWRKMNEWVYKGFDETYKRMGVSFDKIYYESDTYLVGREEVLRGLKEG LFEQHEDGSVWADFEAEGLDKKILLRSDGTSVYITQDIGTAKLRYQDFPIDQMIYVVGNE QEYHFQVLSLLLDRLGYKWGKSLTHFSYGMVELPHGKMKSREGTVVDADDLMDAMRDTAL EVARTAQQAKGVALADKPTAEELRTAEMVGLGALKYFILKVDPRKNMMFNPEESIDFNGN TGPFIQYTYARICSLLQKADEMGYKHQLPEGGELALSSYETALVQQLLDYPTVVQEAAES YSPARIANYTYDLVKGYNQFYHECSVLREEDEALRSMRLQLSQTVAETIHSAMGLLGIAL PERM >gi|228307436|gb|ACLR01000179.1| GENE 9 10448 - 11521 1085 357 aa, chain - ## HITS:1 COG:no KEGG:BVU_2793 NR:ns ## KEGG: BVU_2793 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 40 357 49 389 389 73 26.0 1e-11 MPHLTKSLSALILLLTLALGSLMAQEPIPEAELEAPHDKKVSLSLEARGDYQRIYLGSHA DQAGSGFKGNIANIILSGTLSPKFSYLYRQRLSSINLDRSFFESIDFLYLQYNPIEQLSV RLGKWIVFVGGWEFEPAPIDVFQVGEFCYHMPSYQWGATVSYTLPDGQDNLHMQVIQSPY RKDYEVRSGEPADMYAYNLVWTAHHDWFVPMWSVNFMEYAPRRFMNYISLGNRFQLTPRT FVDLDLMHRTPLDGDGKKLFADYSIYGQLAYHPTEQTKLYLKGSYDHNTSGFHADYGVTD GTQIACLGGGVEYSPIPEVRLHAHADYAFGTNTNPQAVLHNQRTLVNVGVTWRMKVL >gi|228307436|gb|ACLR01000179.1| GENE 10 11547 - 12551 1064 334 aa, chain - ## HITS:1 COG:TM0177 KEGG:ns NR:ns ## COG: TM0177 COG1284 # Protein_GI_number: 15642951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 34 322 7 283 283 143 32.0 4e-34 MKYKLPSKDELRARLAALPGQATDLLTSRKFWYELVLMTVAMFIGAMAVHYFLAPSGLIV GSVTGLGIVLERLLPVMSLGSYMFLINAILLLLSFILIGNEFGAKTCYTALILGPFVDLM EWIDPVSGSMFAQNVHGVMVANPWFDLLCFILVMSAAQAILFSINASTGGLDILAKIFNK FLHVPLGVSVTIAGGLICCSAFLTSPTGLVIMGLVGTWLNGLILDYFMTRMSSRTRVYVI SKDWEHIRDYVIHKLNRGVTIHPVTGGYSGEEHKQLECILTRDEFGKLLDHLRAERMDPF ITSDPVSEVYGLWRKKSQLEELPVETDTPDESTF >gi|228307436|gb|ACLR01000179.1| GENE 11 13069 - 13602 685 177 aa, chain - ## HITS:1 COG:MA1439 KEGG:ns NR:ns ## COG: MA1439 COG2816 # Protein_GI_number: 20090298 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Methanosarcina acetivorans str.C2A # 6 113 123 230 285 64 32.0 1e-10 MIQRETFEYCPRCGANRLEAHGVKAQHCQSCGFTYYHNPSAAVALLVRDLQGRLLVATRG KEPAKGTLDLPGGFVDKGETGEEAAQRELHEESGLRLSTEHFVYAFSLPNSYLYSDFLVP TLDLFYTVQLPIEMPAVRAMDDVAQLHWLAPAEIDPSRFGLISIRRGIARYLASLGN >gi|228307436|gb|ACLR01000179.1| GENE 12 13606 - 14574 375 322 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 3 320 4 316 323 149 33 6e-35 MALYLGIDIGGTNTELGIVDEEGQIVSSQTLSTKQHGGSFADYITALSLQINQMVADPAL SGKVVGIGIGAPNANYFSGCIEEAVNLPWAGSSPIVAELSAQTGLPVVLDNDANASALGE HSYGAARGLDHFVEITLGTGVGSGIYADGRLIRGYQGKAGELGHIAVGEPHQRCGCGRYG CLEASVAAPAVARRAVSLKKLCLEQGMWSELCDIPDEQLTSKVVAEVALATGDSIARQVF DETGEILGRALAQFACFSAPQAFVLFGGVAQCGDLLLRPVRTAFDQALLHIYRGSIEIRL SALPKGQAAVLGAASLARERDL >gi|228307436|gb|ACLR01000179.1| GENE 13 14693 - 16348 2151 551 aa, chain - ## HITS:1 COG:MA3377 KEGG:ns NR:ns ## COG: MA3377 COG4690 # Protein_GI_number: 20092191 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Methanosarcina acetivorans str.C2A # 27 520 2 553 574 218 30.0 3e-56 MTQNALTRLLALFTTLLLLGTSQSYACTGLLVGKGASTDGSVMISYSADSHTLYGELYYW PAADHAPGSMRQITEWDSGKPLGQIPEVAHTYAVIGNMNEHALAITESTWGGRKELMDPN GVMDYGSLIYVTLQRAKTAREAIEVMTTLVKEYGYASSGESFSIADKNEVWVLELVSKGK YGKGAVWVAMRIPDNAISGHANQSRIQQIKFNDPKNCLYAPDVIDFARERGFYKGSDKDF SFQKAYNPYTPSGLRGCEARVWSFFNKFSDDMKQYERFVMGDEKASKPMPLYIVPNRKLS LSDVREMMRDHYEGTPMDMTKDVGAGPYAVPYRWRPMTFEVDGQTYVNERAIATQQTGFV LVAQLRPNLPDAFSILWFGVDDANTAVFTPVYCSSLRTPECYRVGNGDMMHFSWTSAFWI HNWVANMAYARYAPMIKDIRPVQQELEQSFDKLVPEIDKKALALYKQDPMKAREVLTSFT CETADYATYRWKKLGEYLLVKYMDGNMKKEENGQFKTNGYGLSAMPNFPGYDQDYYKHIA ETTGDLLKVNE >gi|228307436|gb|ACLR01000179.1| GENE 14 16398 - 16637 142 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPSTVHTAGAIDGSKDTKKRKKAQGNNHIDKKHLCLLSGARNALVKSLNPKAGTVRVTT RWFLFCFRVAHFVRVTQYI >gi|228307436|gb|ACLR01000179.1| GENE 15 16783 - 17100 696 105 aa, chain - ## HITS:1 COG:HP0824 KEGG:ns NR:ns ## COG: HP0824 COG0526 # Protein_GI_number: 15645443 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Helicobacter pylori 26695 # 3 104 5 105 106 113 50.0 1e-25 MAMEITDANIAGLMAEGKPMILDFWATWCGPCQMIGPMIDELAEEFNGKIIIGKVNVDEN SDLPSQYGIRNIPTILFFKGGEMVSKLVGAQSKAKLQEEAQKLLD >gi|228307436|gb|ACLR01000179.1| GENE 16 17158 - 20976 4563 1272 aa, chain - ## HITS:1 COG:BB0579 KEGG:ns NR:ns ## COG: BB0579 COG0587 # Protein_GI_number: 15594924 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Borrelia burgdorferi # 18 1140 21 1052 1161 738 39.0 0 MDNTPDTPHSPSAGTRMYVPLHVHSHYSILDGMAPVEKIVDKAVACGMPGIALTDHGAMY GIKNFTNYANDKINGDKLSQIKSLGKQIKELEADAANAEEVARLQEEVKTIERSLFKAII GCEVYVARRSLELKDKDAKDPDNPTRSIDRSGYHLILLAKNLKGYRNLIKMVSIAWEHGE YYKPRIDKKLLTEHHEGIIASSACLGGEIAQHILHGRLEEARETARWYQETFGEDYYLEI MLHPNSDPLGGQETYQKQQLVAQEVLKIGQELGIKVIATNDTHFLNEEDAEAHDHLICMT TNSPISDPNRMRYTKQEWLKSPEEMTALFADYPDVLENTLEVCDKVEYYSIDHAPLMPHF ELPEGFASEDDYLRHLTYEGAKKRYGDPVPPEVQERIDMELGVIQNMGFPGYFLVVQDFI AAARKLGVRVGPGRGSAAGSAVAYCLSITQIEPIKYGLLFERFLNPDRISMPDIDIDFDD KNRWRVLDWVTNKYGRDHVSNIITLTTMATKGAIKGVARVEELPLDQANRLCKLIPDRPP EGVKHLNLEWMVQNNQEFREASVSQNEQLANTIRYARQLEGTASTTGVHACGVIISGPPV SDVVPLSTAIDPDTNERKLVAQYEGKVIEPTGLIKMDFLGLQTLSIINDALENIKVSYGI DLDIDTIPVDDPKTFELYSQGDTVGTFQFESPGMRKYLQQLEPTEFKDLVAMNALYRPGP MDNIPTFIERKHGRQEITYDLPEMEPYLKDTYGITVYQEQVMILSRVLGDFTRGDSDSLR KAMGKKKEKEMAKYRIKFVENGVTKGHPRETLERIYDGWQKFASYAFNKSHSVCYAWVAY QTAYLKAHYPAQFMAALLTCNQNKSDKLTKYLEEVQHMGLEVKGPDVNESFTAFSANKDG VIRFGLGGISHVGLSVAEAIIKERKEQGAYQDVYDFFQRTDLTNCSRRALEALILSGAFD SFGIDREVYFAPIAKSGVSGLSYGKDETFLTALMQYGKILESERTQVQASLFGDSDPSVK LPKPIPPKDVEPWSNLERLTKEQSYIGMYLSAHPLDPYAFAIEYLCNCPASDLAQFAELG LTQLTCAGLVTKVRQGISKKNEPYAIIQIEDASGSGEIPLFGKDYVNFGNFAQEGLAILV KMGVAPSRFDPNRLYRTVQSMQLLSDITEDAFRSIQLTIDLSQGEDAPASDSYEEGADGE EEILDRPNTLEGAIELGNAIKDHPGKTELEITFCSSMVPYTTTMYAPSIEPGKWLLEIVK KYQIQCAVQQAK >gi|228307436|gb|ACLR01000179.1| GENE 17 21192 - 22118 1280 308 aa, chain - ## HITS:1 COG:CAC0294 KEGG:ns NR:ns ## COG: CAC0294 COG0598 # Protein_GI_number: 15893586 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Clostridium acetobutylicum # 10 304 15 312 315 179 34.0 9e-45 MRKFYLPKQQFTQIDSLEPHTWIKVVQPTSEDIDYLCDELGIPDSFIGDTADSDERPRTE EEDGWRLTIIRIPIETPEGTTPYNTVPIGVISHLEKQLIVTICYHRTDLIPDFIQHNQRK GISVDTDIDFILRLIMSSAVWFLKYLKQISFLILETEEALEKSIRNEDLLQMMRLQKCFV YFNTSIRGNESVIGRFKVSHYEQYDTDLAEDVTIELNQAYNMVNVYSDVMNGTMDAFGGI INNNINTIMRRMTSISMILMLPTLVASLYGMNVDLPMAEHPWAFIGIMVVCLIFSAIAFW IFKRIRWF >gi|228307436|gb|ACLR01000179.1| GENE 18 22921 - 24231 1631 436 aa, chain - ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 2 434 11 434 443 376 45.0 1e-104 MSVEQIPLAERMRPKTLEEYVGQSHLVGANAPLRVMLERGHIPSMILWGPPGVGKTTLAR LLSQLMQCRCYSLSAVGSGVADVRKTLQEAKDAQAGLFSQHQGRPILFIDEIHRFSKSQQ DSLLAAVEQGVVTLIGATTENPSFQVIRPLLSRCQVFVLKPLEDSDLSQLIDRVFATDPL FSRYHVSLEGADREMLIHLAGGDARKLLNLLEMTLSMALEQHPDETTVQLTGEAIASVAR QQPAAFDRDGELHYDIASAFIKSIRGSDPDAALYWMARLIEGGEEPRFIARRVVISAAED IGLANPQALVVAQAAADAVDFIGWPEGRIPLAEAVVYLAGSPKSNSAYLAIDAALAKVRE TGNLPVPLHLRNAPTKLMSDLGYGVDYHYPHDFPKHYTRQQYLPDELSDAHFYAPQDVGQ AERTLSNYLKFIEEGE >gi|228307436|gb|ACLR01000179.1| GENE 19 24403 - 25356 1015 317 aa, chain + ## HITS:1 COG:VCA0581 KEGG:ns NR:ns ## COG: VCA0581 COG0501 # Protein_GI_number: 15601340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Vibrio cholerae # 11 250 10 241 263 144 38.0 2e-34 MTQIARWFTALTLTLLLAGCGVVPITGRQQLNLVSDAEISAASAQQYSQFIRKATVDNNS PQGQQTLRVARRIAQATDNYLRNNGYDQIAQATQWEFNFVRDRQVNAFCMPGGKIVVYSG LLQATRPTDDELAAVIAHEVSHAVAKHANERISREMLTQLGGQLLTGMVGAKSAALGGIL QQVYPIGSQLLVSLPYGRKQEYEADKIGMVFMAMAGYDPAAAVTLWQKMAQQGQKTPEFL STHPSDQNRIRAIQEFLPEAQQYYSGPGVMSQGPKVQLKSLHKKGNSQATSQLRDSGSSS SAKKQDGGGFHYEPVSR >gi|228307436|gb|ACLR01000179.1| GENE 20 25362 - 25904 612 180 aa, chain + ## HITS:1 COG:PH0075 KEGG:ns NR:ns ## COG: PH0075 COG2109 # Protein_GI_number: 14590029 # Func_class: H Coenzyme transport and metabolism # Function: ATP:corrinoid adenosyltransferase # Organism: Pyrococcus horikoshii # 5 180 8 175 175 120 40.0 1e-27 MWERGFVHYYYGTGKGKSTAAMGLAIRTLGHGGRVYIGQFIKTMSYGDVLFLEQHTKREE CTVELYGSMYGGTGCLIDHAASPLDVQAAEQGLVRAIEQMCSGQYDLVIWDEVSMAVGLG LLKIEALIDAIKKRPNECELVLTGRQYCEELLPYCQLVTNFAEVKHYYHEGVLSRTGIEH >gi|228307436|gb|ACLR01000179.1| GENE 21 25920 - 26921 1041 333 aa, chain + ## HITS:1 COG:BS_ywaD KEGG:ns NR:ns ## COG: BS_ywaD COG2234 # Protein_GI_number: 16080898 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Bacillus subtilis # 120 326 245 426 455 67 29.0 3e-11 MHMIRITQYILPLLLGLSLLSCNKEQQSQETAQGEEETPRVATPFEADSAYNFVAKQVAF GPRIPGSEGHTACLAWMKERLTQYGATVVEQSFEATAHDGTKLPLTNLIASYNPEASQRI LLMAHWDTRPWADKDPNPANHTQPILGADDGGSGVGVLLEVARLLGSVAAPQTIGVDIVL FDGEDYGSYSNEESWCLGSTHWSKNPHVTGYQAMGGILLDMVGGRDATFYWEYFSKSYAP QLLTKVWSKAAELGYGSLFHQADGGGLTDDHVPVIRNLGIPCIDIVNYDPQSEEGFAPYW HTLQDNMSNISAETLGTVGHIVMAVLKDLDAQH >gi|228307436|gb|ACLR01000179.1| GENE 22 26938 - 27357 551 139 aa, chain + ## HITS:1 COG:CC1061 KEGG:ns NR:ns ## COG: CC1061 COG2166 # Protein_GI_number: 16125313 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Caulobacter vibrioides # 3 134 5 137 141 108 43.0 2e-24 MTIDERQEELISQFELVDDWMDRYQMIIDLGDQLEPVEDSEHTTENLIDGCQSRVWIIIS PQEDGTLHLKADSDALITKGIAAMLLYCYNDQPAQAIVETPLYFIDRLGLQSHLSPTRSN GLQSMYETIRRRAQEFMSH >gi|228307436|gb|ACLR01000179.1| GENE 23 27368 - 28309 982 313 aa, chain + ## HITS:1 COG:jhp0277 KEGG:ns NR:ns ## COG: jhp0277 COG4866 # Protein_GI_number: 15611347 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Helicobacter pylori J99 # 4 303 2 289 290 147 33.0 3e-35 MTPFRQIDVADRSTVFPYIYYGAEPICDISFANLYGWAVQYETSWAIGGTQTLVIRFRSP RRDHPVYLCPFCRDDNSWTMTIKELMEISEQEAYPLVFMGVTPGCKERLEKLFPDEFVHI QDDDYIDYVYLREKLARLNGKKLQSKRNHINRFEASYPDYRYLPITTDDLERVAHFADEW LAHAEATGDPDPSLHTERKVIQRFLDNYEALEMRGGMIEIGGEIVAFTLGSPITEDTFDV HIEKARTDIDGAYTIINREFARSIPEQYTYVNREEDLGLPGLRQAKESYRPEVRLVKHTC VWRRPDWAGELES >gi|228307436|gb|ACLR01000179.1| GENE 24 28312 - 29298 885 328 aa, chain + ## HITS:1 COG:no KEGG:PGN_1729 NR:ns ## KEGG: PGN_1729 # Name: not_defined # Def: probable acetyltransferase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 14 264 3 276 330 109 32.0 1e-22 MRPKAETQRLYEEIWRTTFGDSDDFIALYSRTTFDPRRTHLLTTLDQSRALSHVQYLPYL MRYRDQWWRAGYISGAATASDQRGKGLVQHLMRASHLQMWREGCLCAFLIPAEEWLYHFY RKMGYATLYGKRLTPTLEGKPTDRPSGEAWQQYQSWQATLAEHYPTVTHSYHQWRTLLAS LALENGGIGTIGETTYYYYKDAEGKRQSVLAISSAKEPADKPFDLKAPFGMLRPLRIAEL LTWAIELSLLEMDQLAPAALYVDPERIVFDLLDEQIPTNSGRYCLLRQRRQLLFAPRSSC RLVKPFTPDQLLAALPILQHTLVYAMME >gi|228307436|gb|ACLR01000179.1| GENE 25 29309 - 29509 199 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470820|ref|ZP_04055668.1| ## NR: gi|228470820|ref|ZP_04055668.1| hypothetical protein PORUE0001_1741 [Porphyromonas uenonis 60-3] # 1 66 1 66 66 75 100.0 1e-12 MRERYGKRWNPTDRERKIMGLPSRAEEREARARGEEIEIGAPPKDKEQGDKAQTTALSSG SRALTR >gi|228307436|gb|ACLR01000179.1| GENE 26 29586 - 31580 1495 664 aa, chain - ## HITS:1 COG:no KEGG:PG0081 NR:ns ## KEGG: PG0081 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 23 659 89 692 725 328 32.0 6e-88 MLHSHQHFSTLLVTFLLLILGAAGCAKQSSPEGGPYDMTPPRVVRCTPEMGSTNVSTHRV RITFDEFIQLERGEDKIIYSPPQRIPPKALVNQKQLIVTYQDSLISNTTYTINFNRAIKD YNEGNYIEQYVYAFSTGDYLDTMQVSGQVLDAYTLQPLPHILAGVYDTPLPTDSLDRPMT RMTYTDDKGHFTLQNVRDGAYYAIALIDMDRSYSYNAPNESFAITPDSFRTEVIHRSALI PAKETKVDSLANVADSLGVRADSLIAKKQAPKSETDTTATAADSVSPYVYLPNDLLLLLT RPKTHIVRLERLVRRDSMSLMATFTEPLDTLPQIQILSPDYLTKSSSYYPDLSTDRKSLT YWLSPHDSLARDSVVVAFAYPTTDSIGSPINKLDTVTLHAPRAHVAKANAKPKKQPDVKA PETAPNSLSHAGDSTALAETKRELRAVTILSHEDIHKETTRDSLWISYDVPILAIDTTRV QLAKLVDSVPQPIPCQLLLDSVRRCRWLVDFAKEPGTTYRLTVDTAAITGLYGGTSASAE KDLKIASVTELGSLAITLTGYPTEHPLYVHLLSSKEEILATAQPDSAGLVAFKELAPGAY FLKLYVDLNGNGSWDGGIYPATPPEPVRYLPQSVNVQARFATEQKWAYDGTPLAEQRPKD LEGG >gi|228307436|gb|ACLR01000179.1| GENE 27 31601 - 32203 673 200 aa, chain - ## HITS:1 COG:YPO2212 KEGG:ns NR:ns ## COG: YPO2212 COG0009 # Protein_GI_number: 16122440 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Yersinia pestis # 5 198 7 198 206 125 36.0 8e-29 MLTKIYADTPDYAVVREVVQCLESGGVIIYPTGVGYALGCSALKKRAVEQVCQIKGVDSK RHTLAIMCQDLGEVAQYAKLGNETFALMKSGEYEPATYILPPTTTLPAPFRQRKEVGVQL CKHPVTRIILEELEAPLLTGSLPDLPEGYDTNYLTDPELIEEYYGHQVDLIIDGGVAPGG HSAILDCTGAEPQLLREGTF >gi|228307436|gb|ACLR01000179.1| GENE 28 32210 - 33067 1211 285 aa, chain - ## HITS:1 COG:STM2203 KEGG:ns NR:ns ## COG: STM2203 COG0648 # Protein_GI_number: 16765533 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Salmonella typhimurium LT2 # 9 284 2 277 285 315 55.0 5e-86 MSYTKHPNKYIGAHVSAAGGVEEAPLRAGELGARAFAFFLKNQRQWQAKPYTKEQIDTFI ANCDEVGIRREHILPHASYLYNIGNADAAKRLRSRQAMIDEMHRCEQLGLSLLNFHPGSH LKEISEEQCMEYIAAEINAVLAESEGVKLVLENVAGQGTNVGYTFEQLAYIISHVDDASR VGVCIDTAHTLAAGYEIRTADGYTAMWQAFDDIVGYDKLCAIHLNDSKKDLGTRVDRHES IGKGFMGTELFKMLMDDPHLDNIPIVLETPVPELWAEEIAYLYAL >gi|228307436|gb|ACLR01000179.1| GENE 29 33573 - 35924 2597 783 aa, chain + ## HITS:1 COG:YPO1011 KEGG:ns NR:ns ## COG: YPO1011 COG1629 # Protein_GI_number: 16121312 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Yersinia pestis # 38 783 32 690 690 149 23.0 2e-35 MMNLRKLLFAPLASLLFLPLYGAIDEKPVVTDSVMSYELDEVRVITSRPLLRQAGLLMST PGAMSLVTPTMIREYDIKHLSDLTGVVPNLYMPDYGSRLTSPIYMRGIGTRSGGQSTAFF IDGVPVLNQSINRYLLGIESIEVMSGAHSNIYGRNAMAGTILLTSRSPIDDPALDVHARV GNHGIIEGATRLAHAFNSKVGLALGGYYNRNNGFYTNAFDGRSADAEEAYGANLHFEWRP DATQRLRLAGVWDGVHQGAFPYAMIHPKSGEMMPINYNAPGSYDRTIGEARLAYDKSWDE IRLDFTTSYQALRDNMLMDQDYTPRDIFTINQRQHQDAVTADLILRNREQTTYNWTVGLN GIYQMNHMEVPVAIRPEGLMAMIQPGLNKANKNDKVPVLLTVDASKERVNHNLFDKRSYG VALYHESNLHEPFGWTGFDLNLGVRLDAERQSMDFDSDFSLGLDVAPKKNPDAKHHFDVT SRLMGQGGYQDFFQILPKLSLSYRPTGSSYLFVAASKSYKTGGYNEQVMTEVLMQQAQRE MMALVMSQGKQQPQVQTGDANLAAFKPEHAYNLELGGRLLTLQDRLFVSATLFGSWIRDL QVARFVTTGTGRTTVNAGKALSLGAETSIKARLWRSLTISAQYGYTHATFQDYLTSRANP KGGAPIEVNYKGNFIPYVPAHTYATMLQLDEPIQTSWLKGVLASVELRGNGPIYWDSENM HQQAPYMTLGARLGVRLPYVTVTLWGRNLTDTRYATFYFQSFGNSFLQQAQPRSFGADLS FHF >gi|228307436|gb|ACLR01000179.1| GENE 30 36014 - 37549 1305 511 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470807|ref|ZP_04055655.1| ## NR: gi|228470807|ref|ZP_04055655.1| O-antigen polymerase family protein [Porphyromonas uenonis 60-3] # 18 511 1 494 494 820 99.0 0 MSSHTSTTEAHTSSSRLVSCLSRYFYVVVVGIALIVVGIVALTGAYPRHTPDSLLAADVL RYTPLLLTVSLLMVFGALLLPWILAKREARTTGAKLDYRHHFAPLLCFGLGYANLLLGIV PTYLGLVTPFLLGILIDNRWRRQGNLLQTLRARSLYPLALCAALYALYTAIVALAWSSSR ERALDYWDKEIWLFLVPLCFLIYSGPSQRLLRSFWLGALRIGWIYIVTVLTFFYALLISC GSSPLITLTLSKDYLHDAGFVISTTHMLMPFTFTHYTYVGIFLLTPIVMTIRSSSRSLRL QAECLLLGVILYAYALQARYLLLMALLLVAYAVACKLLDWVKVTRRQPYLMSYLMLAGAI LVSLVYTTSPHLTAGYLEGGIRNELLQMSYQALREIPIWIGGGLDYAYNLLLPLPVNIEQ ESIIVQFHNQYMQMLVQSGIIGLLLWISILGSMLWIARRQRNVALVVLTSLWIILCNVDL LSFIHRYVVGVMFLLCLALSTQGDDKLQRAD >gi|228307436|gb|ACLR01000179.1| GENE 31 37564 - 38541 988 325 aa, chain - ## HITS:1 COG:no KEGG:CA2559_13223 NR:ns ## KEGG: CA2559_13223 # Name: not_defined # Def: putative LipD A biosynthesis related exported protein # Organism: C.atlanticus # Pathway: Lipopolysaccharide biosynthesis [PATH:cat00540]; Metabolic pathways [PATH:cat01100] # 11 304 2 287 294 127 26.0 5e-28 MAQSNQLTRWQRLSLRLMRSTLRGLARLPRSFVDKVLVPALDWLLYHLFKYRRQVVEENI RLTLTYLSPAEQKAVGKRFYRHLAELMLHEARYAYGSDEQVRQLFRLEQTELLDQLYEAG HRQVFVLLGHIGPWELMGSSALHLDRSRYQLHVIYKQLHDPVADQLTHEMRELHHARCIE MMQLARTLIRHRGEQEGERLQMYCLLADQSPDYEQMRYASSLFGRTTPFVTGWSHLATKL QIPLLFYEIRHDDQAKQWVGTFRLLCEHPTSEIQYQLVDDYVTLLEENIRLAPHRWLWSH KRWRFDPHDFPQVVYSPRCRDLHQK >gi|228307436|gb|ACLR01000179.1| GENE 32 38528 - 39763 656 411 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149914878|ref|ZP_01903407.1| 30S ribosomal protein S2 [Roseobacter sp. AzwK-3b] # 44 389 43 379 425 257 43 2e-67 MKEFIKTSQSSERTILVGLITPDVSETQAEEYLDELAFLSETAGAEPVARFLQRLDTPNP ATFVGKGKLDEIAEYVSAHEVGLAIFDDELAPNQLRNIERQLGIRILDRTSLILDIFATR AQTAHAKTQVEMAQYQYMLPRLTRLWTHLERQRGGNIGLRGPGETQLETDRRIILRKISQ LKEQLKKIDKQKSVQRQNRGKMVRVALVGYTNVGKSTLMNVLAKSDIFAENKLFATLDTT VRKVVLGNLAFLLADTVGFIRKLPTQLVESFKSTLDEVRESDLILHVVDISHPEFEDQIA VVTETLREIDALGDKPQILVFNKIDAYQHIPKDPDDLTPATKLNRTREELEKSWMARMGN DCTFISARTGEGMDELRRLLYDRVKEIHIQRYPYNDFLYQDYSDLTDDGAE >gi|228307436|gb|ACLR01000179.1| GENE 33 39773 - 40510 923 245 aa, chain - ## HITS:1 COG:sll1479 KEGG:ns NR:ns ## COG: sll1479 COG0363 # Protein_GI_number: 16332186 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Synechocystis # 12 236 36 248 254 78 29.0 1e-14 MNYHQYSTPELVTTQLAQFIAEAVEATEGDFHLALSLEEHAEILAKALTSEPWRSRIAWD RVHFYLLHEQLGGADLAHRSRLQRLLFDPLQIPADHIHALEEPAQEPAQAASALQQHLAE RVRHLDGHPQFDLALLEMGVDGHLAGVYPDQVELYISDDVFAPNEMTTEQGEQRQLVTVT LEALEESKRLVFLALGQDVRHAVGHIVNLLPEAKAYPANFLAAKIPWVHLFADDQAMREK SYAIY >gi|228307436|gb|ACLR01000179.1| GENE 34 40574 - 41713 746 379 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915191|ref|ZP_01903719.1| 50S ribosomal protein L27 [Roseobacter sp. AzwK-3b] # 7 357 3 341 345 291 46 6e-78 MAGESNFVDYVKIYLRSGKGGRGSAHFRREKYIPKGGPDGGDGGHGGSIYIEANQNYWTL LHLRYNRHIIAESGGAGGAKLQTGADAPDIVIEVPCGTSVHDATTGEFILDVSQHGERHL LLPGGRGGKGNNFFKTSTNQAPRYAQPGEPSQERLVVLQLKTLADVGLVGLPNAGKSTLL AALSAAKPKIADYPFTTLQPNLGMVSYRDNRSFVMADIPGIIEGAAEGKGLGLRFLRHIE RNSILLFMVPIDSPDITAEYRMLCRELEEYNPGLINKRHILAITKIDMADSELIDLVSET LPEEVPTIFISAVAQRGLTELKDLIWREINAPSLHDPNEILRQPLNDRTTQEDDDPDNPL PKLKVEEDHDLIDDIIWEE >gi|228307436|gb|ACLR01000179.1| GENE 35 41721 - 42305 761 194 aa, chain - ## HITS:1 COG:XF0275 KEGG:ns NR:ns ## COG: XF0275 COG0563 # Protein_GI_number: 15836880 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Xylella fastidiosa 9a5c # 1 187 11 196 198 156 39.0 2e-38 MIHVIIFGAPGAGKGTQSRFIEQRYHLEHISTGDLLRQEIARESPLGKRVQSIISQGHLV DDETIIDLIGNELHHLPEGVDGVIFDGFPRTVAQAEALDALLEKDKTSVDCLIELKVPEE ELRTRLLNRAKIEGRADDTPEVIADRIRVYNERTLPIVDYYHRKGLHYEVPGAGSIEEIT EAIFVAIDKSLQDN >gi|228307436|gb|ACLR01000179.1| GENE 36 42362 - 42904 604 180 aa, chain - ## HITS:1 COG:SP0012 KEGG:ns NR:ns ## COG: SP0012 COG0634 # Protein_GI_number: 15899961 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 17 180 11 175 180 113 40.0 1e-25 MTDQEIIVHDKTFVPYIKGEQLRAATRRLAEQIRQDTEGCDPLFVCIMNGSFMFAAELLQ AINTSAEVAFARYSSYSGMGSTYQLKEVMPVTTPLAGRLVIIIEDLIDTGFTMMKLKEKF LADGAADVRIATMLLKPEALQCPIHADYVGMEIHNSFIVGHGLDYNDRGRMLDDIYILKE >gi|228307436|gb|ACLR01000179.1| GENE 37 43414 - 43644 127 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MISSMALSRKSEISSVEISKPPRRSRKILRNFDLLLPKFHFILPNFYFPAPWRIFICSLE ISHFLGEKPKLAEVCR >gi|228307436|gb|ACLR01000179.1| GENE 38 43828 - 44022 227 64 aa, chain + ## HITS:1 COG:no KEGG:BVU_3346 NR:ns ## KEGG: BVU_3346 # Name: not_defined # Def: pyruvate carboxylase subunit B # Organism: B.vulgatus # Pathway: not_defined # 4 46 2 44 591 85 86.0 5e-16 MATKKKIQFSLVYRDMWQSSGKFQPRAEQLAAIAPLIIEMGCFARVRDERWCLRAGQATR WREP >gi|228307436|gb|ACLR01000179.1| GENE 39 44110 - 44427 427 105 aa, chain + ## HITS:1 COG:MJ1231_1 KEGG:ns NR:ns ## COG: MJ1231_1 COG5016 # Protein_GI_number: 15669416 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Methanococcus jannaschii # 5 101 92 188 463 90 47.0 8e-19 MYPVPADVRKMMYRVKHAQGVDITRIFDGLNDPRNIIPSIHYAKEAGMTAQATLCITYSP IHTIEYYSTLADKLIEAGADEICLKDMAGIGRPHFLGQLVKSSQV >gi|228307436|gb|ACLR01000179.1| GENE 40 44489 - 45697 1858 402 aa, chain + ## HITS:1 COG:AF1252m KEGG:ns NR:ns ## COG: AF1252m COG5016 # Protein_GI_number: 18677784 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Archaeoglobus fulgidus # 1 259 216 450 480 91 28.0 3e-18 MLEVCENGADIIDVAMEPISWGKIHPDVITIREMLYDAGFDVPEINMDAYMRARTMTQSF IDDFLGYFMGATNKETSSLLVGCGLPGGMMGSMMADLKGVHSGINMYLRNHNEPELSIDD LLVKLFDEVAYVWPRVGYPPLVTPFSQYVKNIALMNVYNMTQGKGRWLAIDQNMWNMILG KAGRIPGKIDPELVALAKEKGLEFSDADPQQFYPDALDEFRKEMKENGWEFGPDDEELFE LAMHPEQYRRYKSGDLRREFEASLAKAKADALAKKGFDESDIKKAMRAGTQMIPAPTTGT VLWEVDPTEGSMAPATGTEYVTGQPFCYIETPFGQIERVNTNFTGKLIEVCVGQGQTVRK GDELAYIKPAEKEEHYPDYQPPIKRIEEEATTRQRERRSLGR >gi|228307436|gb|ACLR01000179.1| GENE 41 46081 - 46779 826 232 aa, chain - ## HITS:1 COG:no KEGG:PG1823 NR:ns ## KEGG: PG1823 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 4 232 17 217 217 131 35.0 2e-29 MKKVILAIVTMLAATTLATAQMRPAIKVEAGANFANQTTKVGDKSTDGKMMIGYRAGVGV EFGITDGFYVNPGVYFLSRGSKATVEIPEIAGVASKTATTMWLHNVEIPVHAGYRAALAP GMAVSIQAGPWFSYGFLGKVSQKTTITGEGKIADAARKVAETADEVANKGEKNPYKNKVL KPFDLGVGMQAGFEYQQFGLNLGFEYGLLNTSAVENVKVNNMNFYVGLGYRF >gi|228307436|gb|ACLR01000179.1| GENE 42 47181 - 48896 1901 571 aa, chain + ## HITS:1 COG:XF2704 KEGG:ns NR:ns ## COG: XF2704 COG0793 # Protein_GI_number: 15839293 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Xylella fastidiosa 9a5c # 56 368 80 386 508 226 41.0 9e-59 MKQLSFPSHLIGLLLLGLLSLAPTNLTAQAPSSSRSSAGQKAASDDFTTTMAVMGSVLSN VRNFFVDTVNLTSLYDGALTYMLQQLDPYTVYFNEEETKAFEESTTGLYGGIGAILRQHQ DSVVIIGSLIQGKAADKAGLRPADIIWRINGKDFSHTKVVDVRNELRGEPGTPITLVVRR PGYAKDSLTVVFNRERIDLSPVSYAELLNGRVGFISLNTFSTSTCQEFLKAYDRLQKEAG GKLSGLILDLRDNGGGLMEQAIQLVNLFIPKGKTVVSLKGRYPQQNNSYKTTKEPLDTKI PLVVLINEGSASASEIVAGALQDYDRAVIVGRKSFGKGLVQGTLELPDGGLLKLTTARYY IPSGRSIQKLSYNHRGGAEQVNATDSLGTPYTTAGGRTVYAAGGIMPDIVCPSDSIPSLL GTLLFDSLTYDFVTDYLLTHRAPERSKLRSFDLGDEAYAAYKKKVIDSGFTFKSIADELV KKVEEALKGEQRYDEVASDFAAFQKSLRADTPRLMKTYEGFIRDYLNMEILSRCYYDEGR LEYYMSRDKVAQRAVSLLGDLTAFHQLLKGK >gi|228307436|gb|ACLR01000179.1| GENE 43 48961 - 50640 2402 559 aa, chain + ## HITS:1 COG:PM1071 KEGG:ns NR:ns ## COG: PM1071 COG2985 # Protein_GI_number: 15602936 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Pasteurella multocida # 11 551 2 543 553 394 42.0 1e-109 MNWFANLFVGSGIAHSVFLIALVIAVGMLLGRIKIGKVSLGVTLVLFVGIFFGALGMQIE PGVLHFVKEFGLILFIYAVGLQVGPGFFPSLKKGGLKLNLLAVLVVMLGVGVTIAIKYIS GLPMSTMVGILSGAVTNTPGLGAAEQTYSDIMGTSDPSIAMGYAVAYPLGVIGIILSMMV VRSVLRVNIRKEEQNFVSQDDALEHTARSASFVVANPAVFGKSIMELLSSYFNQGEIVVS RHYCHETHRITVAKGDTILQEHDRVFVIGQPHELDHSEAIFGQRIEVDRKNWIPTESNLI SNKYTITKKTLNGKRLGELQLRQIYGVNVTRVTRAGVDLVAHPSMRLQMGDQIRVVGSDA SVNKVRELVGDSQKHLNEPNLIGIFIGIAIGVLFGSIPFAFPGIPQPIKLGLAGGPLIVA ILLSNFGPKFGLVTYTTHSANLMIREIGIALFLTCVGIGAGDGFVDTIVNGGYHWVGYGF IITIIPMLIVGLLGKKLFKVNYLTLSGLMAGSMTDPPALAYANGLTEEDAPAVGYATVYP LTMFLRVLTAQMLIIFFVS >gi|228307436|gb|ACLR01000179.1| GENE 44 50663 - 50968 515 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470775|ref|ZP_04055623.1| ## NR: gi|228470775|ref|ZP_04055623.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 18 101 1 84 84 144 100.0 1e-33 MASRRNLKKTIHTDVEEMLFDLSILHAVASEERKPAIEELISKVIDSENDFIARISHTDG RGEAKLVRKYYSKLQEEYLHFANEIEGEVNKLGDELLTPEA >gi|228307436|gb|ACLR01000179.1| GENE 45 50976 - 51521 666 181 aa, chain + ## HITS:1 COG:DR2514 KEGG:ns NR:ns ## COG: DR2514 COG0204 # Protein_GI_number: 15807499 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Deinococcus radiodurans # 8 175 21 189 201 130 43.0 2e-30 MKLARLILRWCGWQLIEPATYPRQSVICVAPHTSNMDFIWGKLYYWAVGQRAHFLMKREL FVPPLGWLFKAMGGIPIDRRHKGNTVEQVVARFRAKDDFAVAITPEGSRKARDRWKTGFY HIAEEAGVPIQLAVIDYKRKKLGIFEQFVPTGDLDKDIHYIRSKYRADQAKKPELFSEQA Q >gi|228307436|gb|ACLR01000179.1| GENE 46 51526 - 52344 964 272 aa, chain + ## HITS:1 COG:STM0308 KEGG:ns NR:ns ## COG: STM0308 COG0388 # Protein_GI_number: 16763691 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Salmonella typhimurium LT2 # 6 270 4 255 255 189 41.0 5e-48 MKQETLRVVLAQRPIVWTDPEANLRLMAEDVRTATEEGAHLVVFPEVMLTGFNLKVAQSA RPWRGPELERLRALAQEHQIAIASSAFVWDDEAQPTHYYNRAYIALPDGSLYAQDKRHLF SMAGEDRLLTPGEGYDIVTYRGWRIRLITCYDLRFPVWCRNRTHTDGSLDYDLLLVVANW PRPRITAWRTLLQARAIENVAYVIGVNRIGSDPFGTDYSGESLAYDYLGSPLIEAEPYAD QLLSATLEPEPLAAFRQKFPVWRDSDSFTLHS >gi|228307436|gb|ACLR01000179.1| GENE 47 52351 - 53217 974 288 aa, chain + ## HITS:1 COG:AF1397m KEGG:ns NR:ns ## COG: AF1397m COG0614 # Protein_GI_number: 11500024 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Archaeoglobus fulgidus # 36 286 49 309 311 85 23.0 7e-17 MNALTHSLRRPLLRFLPLLLLLPFLVGCHKASQQEDEAQAPRIVSLVPSVSDQLYDLGCD SLLVGCTSYCSRAVADSVTVVGSAIQTNLELLIAQRPTLVFASDFTAPQTISALENAGIQ VIQFTNPASYDAIQAQYRQIATLVGASDRAEAQLAEINQRVDWLKELNAARPWHPRAFMQ IAFDPLFGASTSTYMNDLITFSGCTNIVTMAGNGQLSLEYVVEQDPEVLFLITNHGSESG SEESWHKLRSVTAVQQGDYCPLPGSIVSQPSPQHFVEALQLMTDYLSE >gi|228307436|gb|ACLR01000179.1| GENE 48 53236 - 54246 1254 336 aa, chain + ## HITS:1 COG:MA1131 KEGG:ns NR:ns ## COG: MA1131 COG0609 # Protein_GI_number: 20089997 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Methanosarcina acetivorans str.C2A # 31 332 37 345 349 167 33.0 3e-41 MPHRPTLAKSYWTLPLMVLLLLVVAILSLHVGAHPISLWQLSEILSDPASVDYTILTQLR LPRIINAISIGGGLSLCGAILQGLFRNPLVEPYTLGISGGASLGITLAIVLGLSTAFLTL PAFGFIGALVTILLVYVNSYQRHGLSVQRMLLVGVMVSFMASSGVMLLLSVARAEQLSRI IFWTMGSLQESKPFIVWGMLLFTLLLLGASYLFVQSLNALRLGELKAQQLGINTRRVVLW LFVLSSLLTSACVAVAGVIGFVGLVIPQATRILFGNDYRVLLVGSFINGGIFLILCDMLA RTILSPIELPIGVITGLIGGVAFLYLIHRTRRSHQI >gi|228307436|gb|ACLR01000179.1| GENE 49 54243 - 55037 213 264 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 1 214 1 208 311 86 27 4e-16 MTSQTILRAEQLICGYGRKAVIGPLDLAIARGSLTAIIGPNGAGKSTCFKTLTGVLPPLS GKVSLLDKPLSNYTLRERARLVSMVNQQITPQPLRVYDYVLMGRLPYFKRFQIGYSEEDH ARCDHYLERTGIARLADKRLDELSGGEQQMVAIAQALTQEPQLLLLDEPISHLDIGYTSE IMQLLETLHEEGLTILMILHDINIASEYCEELILFGPDGLLAHGTPQTVLTEAHLQEAYH TTVLVQSAPASGRPYIYPMRKRRS >gi|228307436|gb|ACLR01000179.1| GENE 50 55493 - 57289 3046 598 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228470785|ref|ZP_04055633.1| 30S ribosomal protein S1 [Porphyromonas uenonis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gi|228307436|gb|ACLR01000179.1| GENE 51 57423 - 59339 1647 638 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470800|ref|ZP_04055648.1| ## NR: gi|228470800|ref|ZP_04055648.1| hypothetical protein PORUE0001_1766 [Porphyromonas uenonis 60-3] # 16 638 1 623 623 1226 100.0 0 MKQTATLWSLLLTLIMTVTVSTAQESGLTRLQATNAGVSLRAGESLAGFGYADRNVDAVR YLGVGKVNVYLSAYILLPDVGANKIERISFPAAVDDQSAYLLILSEDGKKTLYNQPCKIV AGINQIALTTPFATEAGKRYLVGFATKAVGSDGDKPELIPFDGVNEMKEAQYAGYGTKPY PTNSSTKDEFQMTSVQGYGSALIFVKLQDESKLQSVGYFLWADGDFKLVKAGEKVPTEVA FYNFGVKDITSFEVSYRFGTGEPKFLKRTLKEPLQPSQDIAATIAIPAEDEGMGTLHVAL AKVNDQENIFASNSSQIPYQIGSSAAINRETVLLERFSTEQCPKCPLADPYVKDNIKKLQ AAGLRVSYIVYHSGYLTDFLTTKESEALYIYFFDESSFAPAMSINRTFLPSRNALVNSAG AYPSSEWVPRVKKDKQGVRIERIDQKIDNSKLTAVVSGVALKDSFDPEDLYLTVIVTEDN VPSRAQAGARKNYKHNAVPRLFLTAPTGDKLQLQPDGTFSVTLEGALMPTWVGSQCKVVA IVHPSVQQSNRRNRAVHTAETAQLGFPLANEPVAPAQAPIVTVEDGYLSIQGRVDAFELY DMSGALVTTSVETHLLPGTYIVRTFSDLRVYTSKVIVR >gi|228307436|gb|ACLR01000179.1| GENE 52 59574 - 59810 221 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALSRKSKVSSVEIFEPPRRNRKILRNFEIFLPKFHFILPNFYFPVPWRIFVCSLEISNF LGRDGEWRRSRSSRSVRL >gi|228307436|gb|ACLR01000179.1| GENE 53 59968 - 60909 1352 313 aa, chain + ## HITS:1 COG:lin1064_1 KEGG:ns NR:ns ## COG: lin1064_1 COG1705 # Protein_GI_number: 16800133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 26 174 43 201 201 79 35.0 9e-15 MKLFTDPSRSLLSIACLLLLCATAWGQAPMNPNYQTYIRTYADECIRQMKRHKIPASITM AQGLIETGAGSSRLARDGNNHFGIKCHRAWQGQRIYADDDLKGECFRKYRSAGDSYEDHS NFLKQPRYKVLYTYQITDYEAWARGLQQCGYATNKGYANMLIKVIEQYELYELDRGRYPR WMSGRPAPTYTPSEKDPEMKLTHEGYFSYGLLYILANKGDSLESIAREMGISLKHLADYN DMPVDFPLQAGDVIYLERKNKRATPDYPDHVVQVGESMHDISQRYGIRLERLYRMNHLDY DYVPEEGDVLRLR >gi|228307436|gb|ACLR01000179.1| GENE 54 60966 - 62126 1249 386 aa, chain + ## HITS:1 COG:MJ0203 KEGG:ns NR:ns ## COG: MJ0203 COG0150 # Protein_GI_number: 15668375 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole (AIR) synthetase # Organism: Methanococcus jannaschii # 45 373 49 330 350 108 28.0 2e-23 MNRYMRRGVSAAKEDVHNAIAHIDKGLYPQAFCKILPDVLGGDPDYCNIMHADGAGTKSS LAYIYWRETGDLSVWRGIAQDAIVMNLDDLLCVGATSGMLLSSTIGRNKQLIPGEVIGAV INGTEEILAQMRDLGVEIYLTGGETADVGDLVRTIIVDSTVTCRMRRSDIIDNAHIADGD VIVGFASYGQATYEARYNGGMGSNGLTSARHDILSHALAEKFPESYDPAVPDDLVYSGSR ELLAEVPGTGLTVGELILSPTRTYAPLVAKLLKEMRPAIHGLIHCTGGAQTKVMNFVTNK HIIKDNLLPIPPLFQMIAEESGTDAAELYQVFNMGHRLEAYLPAEQAEEAIAVARHFNIN AQVIGRVESAEQNRLTLVTPFGTVER >gi|228307436|gb|ACLR01000179.1| GENE 55 62164 - 63270 1539 368 aa, chain + ## HITS:1 COG:VC2179 KEGG:ns NR:ns ## COG: VC2179 COG0216 # Protein_GI_number: 15642178 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Vibrio cholerae # 4 367 5 359 362 327 49.0 2e-89 MNDLLNRIEALVARHEELETLITDPSVIADGRRFATLSKEYTHLGEILKAGAQYKQLLTQ QEEAESTLQDSDSDEELKAMARELLAEAKEESPKMEEEIKLLLLPNDPEDDKNAILELRA GTGGDEAALFAGDLFRMYSRYCETKGWNVTVSSYTEGGTGGYKEIVLNVTGTGVYGTLKY ESGVHRVQRVPQTETQGRIHTSAATVAVLPEADKFEVNINEGEIKWDTFRSSGAGGQNVN KVESGVRLHYPWRNPNTGVVEDITIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDEI ASRRKTMVSTGDRSAKIRTYNFPQGRVTDHRIGLTVHNLPGVLGGDLQPIIDALIVAENT ERLKEAAL >gi|228307436|gb|ACLR01000179.1| GENE 56 63384 - 63965 390 193 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 5 193 5 199 201 154 41 1e-36 MTHELIKLPYANNALEPVISAETIQYHHGKHLKGYVDTLNKLLPDSDLKDASLEEIVRKA EGKLYNQAGQVMNHNMYFLQFAPNAGGHPEGKLADAIKRDFGSFEAFQTAFNDACTSLFG SGWAWLASDDQGKLSIEKEPNAGNPLRKGLKPLMCFDVWEHAYYLTYQNRRADHVKDLWS IIDWKEIARRYEA >gi|228307436|gb|ACLR01000179.1| GENE 57 64131 - 65129 1321 332 aa, chain + ## HITS:1 COG:BMEI0137 KEGG:ns NR:ns ## COG: BMEI0137 COG0039 # Protein_GI_number: 17986421 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Brucella melitensis # 4 322 7 325 326 120 31.0 2e-27 MNFVTQDKLVLIGAAGMIGSNMAQTAAMMHLTPNICLYDPFAKGLEGVWEEMRHCGFEGL NLTFTSDIAEALRGAKYIVSSGGAPRKEGMTREDLLKGNSEIAAELGRNIKKYCPDVHHV VIIFNPADITGLVTLIHSGLKPSQVTTLAALDSTRLQSELAKHFGLQQSQVTNTRTYGGH GEQMAVFASTARVDGTPLTDLIGTDRLTHDDWAALQQRVIKGGANIIALRGRSSFQSPAY VSIEMIRAAMGGEPFRWPAGCFVRDSRYKNVMMARETTITRDGVAYKEVKGLPDEEAALD KSYEHLQAMRDQIIQMGIIPAVADWHTVNPNL >gi|228307436|gb|ACLR01000179.1| GENE 58 65619 - 66176 617 185 aa, chain - ## HITS:1 COG:no KEGG:Pcar_0370 NR:ns ## KEGG: Pcar_0370 # Name: not_defined # Def: hypothetical protein # Organism: P.carbinolicus # Pathway: not_defined # 99 177 44 123 124 72 47.0 5e-12 MKQYYVIRNDQQTGPYTIEELATLELKPETMVWTEGMTDWAPAREVSELQELFAPSTPTP PSYNAPTYGAPQYNSAPQYSSAQQYNSAPQYSNPSERPPIPPNYLVWCILVTIFCCNIGG IIAIIYSARVSSRYIAGDYEGAATASRLTRNWIIATACVGFVCMIAYLVWLFSFQMGLAS FSPYY >gi|228307436|gb|ACLR01000179.1| GENE 59 66386 - 67666 1453 426 aa, chain - ## HITS:1 COG:SA0731 KEGG:ns NR:ns ## COG: SA0731 COG0148 # Protein_GI_number: 15926453 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Staphylococcus aureus N315 # 3 420 4 423 434 598 72.0 1e-171 MQIVDIKGREILDSRGNPTVEVEVVLDSGAMGRAAVPSGASTGEHEALELRDGDKSRYLG KGVRKAVENVNEVIAPALFGMSALEQREIDQKMIDLDGTETKSVLGANAILGVSLAVAKA AADELAVPLYRYLGGVNAHTLPVPMMNIINGGSHSDAPIAFQEFMIRPIGAKSFSEALRM GSETFHALKKVLHNRGLSTAVGDEGGFAPSLDGVEDALNSIIEAIHQAGYKPGSDITIAL DCAASEFYHEGVYSYAKFEGEKGQQRTPAEQVAYLETLVSKYPIDSIEDGMDENDWEGWH LLTEKLGNRLQLVGDDLFVTNVEYLSRGIKESCANSILIKVNQIGTLTETLDAIDMAHRH GFTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEEELDTQATY GYRRLR >gi|228307436|gb|ACLR01000179.1| GENE 60 67938 - 69845 2619 635 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470818|ref|ZP_04055666.1| ## NR: gi|228470818|ref|ZP_04055666.1| hypothetical protein PORUE0001_1774 [Porphyromonas uenonis 60-3] # 1 635 1 635 635 1189 100.0 0 MKRITTYWLSLIALLLLPLGATAQKVILEETFDEITSGSNTKNPRFAMLSRWKGNDNTTL MKNIYQADHAILVGSTSNSAVGYFELKTLDLSGNAGAFDVTLEVKGINTDASGILKVSIV GNDASAQEYTPTKYREDEWETHTFSFSGGQGATVLRIETLNNASADNCKGVFINNLKVTQ MQGQPTLVSDVKSVDFRRANIGETAKFQLAFVGTNLTAAVKTEITGEGKDAFKIAKDAEN TGKHTLDLEFTPTAAGKCEATLHITSGDLVLDIPLMGVGVDPANPYGLDPNAKPVESLNE PFTTNPLLSGWREVAFEGDVHWEPRTPYNDEPVMSIEAAGSGQKVRSALITPLVKIPSSG SKVRLMADYRIGFAKGGKFVVKRFSKEGKLIADLKTIEPKEPVDEMAYKFELLSEAIEAD GQDSYFVFEYMGDDSPAIKSESKTLTVLLDNVKLTAEEIPAPVLTTDADKLDFGTVNKDA KVEKPIIVEGEHILSRIKAEIVGDGKDFFEIDKSALPANGGALKVTLKGTKEIASIEAKL VLTAEGEAKGMSVTKEIPLVGKIVTSTQEILGETAPVRFTAEGLVVVSDATLALYSADGQ LILAGSYRAGDQIRIDYTGSVILYVEGVAYKGTLR >gi|228307436|gb|ACLR01000179.1| GENE 61 69915 - 71030 1163 371 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470831|ref|ZP_04055679.1| ## NR: gi|228470831|ref|ZP_04055679.1| hypothetical protein PORUE0001_1775 [Porphyromonas uenonis 60-3] # 1 371 1 371 371 728 100.0 0 MKKNCIWVCGLLLSALVLLVGCHGSDSPSGALRLSKETISITVGQEIALTRTGEGGAVEV MLPKGKDFALTVDNDQVAQVKGKTIKGVAPGKATVTVTAGAEHALLTVEVQAINKDQKVT LSPTWISTPVDRAIVFGAQEGAGVDVVVTTTPATDFTISTSDPDKVKVEGHKVTGLAVGT YKLAILAGGAKADFELIVGDKELTGTFLKSSGRKVLFVPEHLEDVWDRQELLKKMIESNT SYLFDHIDEEHKAIWFIDKNVKAGHMSMSYSHIVYVLNPKGSERPHLEAMYLDQPNGMFE FTYVGYISDLGFNVDQNNPPELQVDQEGNHYFEDVHPTLPYTVRIYYKTRINDEGDKVED VYARLTPVVRM >gi|228307436|gb|ACLR01000179.1| GENE 62 71345 - 72364 1562 339 aa, chain - ## HITS:1 COG:PM0566 KEGG:ns NR:ns ## COG: PM0566 COG0115 # Protein_GI_number: 15602431 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Pasteurella multocida # 1 339 2 339 340 336 50.0 3e-92 MKNLDWSSLGFGYLKTDYNVRCYYRNGKWGELEVSSEETVTLHMGATCLHYGQEAFEGLK AYRGKDGKIRLFRVEENAKRMIRSAEGVVMAPVPEELFIKAVKKAVELNKDFVPPYESGA SLYIRPLLLGLGAQVGVKPAPEYLFIVFVSPVGPYFKEGFKPTPMAIMRGYDRAAPLGTG TIKVGGNYAAGMVPTVLAHEKGYSACLFLDAKEKKYIDECGPANFFGIKDNTYITPESTS ILPSITNKSLMQLAEDLGLKVERRHVPEEELATFEEAGACGTAAVISPILRVDDLDEHKT YQISKDGKPGPICEKLYNKLRGIQYGDEPDTHGWVTLLD >gi|228307436|gb|ACLR01000179.1| GENE 63 72537 - 72755 145 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 1 47 43 89 91 85 80.0 9e-16 MKLRKKDFEVRKNFLIPPWKILIFYRGNFDFLGGVVSGSSECVGVRRSYQTCNCWRNVQK CLVGGRPLCQRM >gi|228307436|gb|ACLR01000179.1| GENE 64 73026 - 75290 2453 754 aa, chain + ## HITS:1 COG:no KEGG:LLO_3002 NR:ns ## KEGG: LLO_3002 # Name: not_defined # Def: transmembrane protein (fibronectin III domain and GP5 C-terminal repeat) # Organism: L.longbeachae # Pathway: not_defined # 26 551 1377 1815 3329 77 23.0 3e-12 MKRMLSILALLGTFFLLPLVAQAQKYTVTINQVEHATIKVTYGSYSSPTVVNSGDQVDKG TFLTIQVTPDAGYQVTNYVVNGVKKKLNTLGGGFERVSANMEISANVVAATPCIVTITPP ENGTLRVMNVTAKKFLKSGETVDSGTSIYMSATPGKGYDIDYWLIDEKQYQPSDNKDSRY SKLYTVKKDVTISVKFKNISQPTPSDYTVTMIQPKEGQGTMTASYYNKDGNKTALTTGNS VPKGTYVTFEVKPAEGYEMDHWMIDDKLVPVEESSNTKGVIVNANLKVEPILKKVGGSAQ PTEGKITMVQPKTEEGSMRAYTFDDEGEELPIQDGQSVKIGTNITFAVTPAEGYKMSSWK VNDETKEVDATTPNKIKLTVTGNLKVEPVLKAETPVNPTEATLTVKREGTGATISGKYVT PDEKTFSIWEGNTKQVPLGSKVTLTANLTKGFEVTYMNNDTPAPEESLSEEGKVYTFIVQ GNVTVVAKVTEKQVAGEFTVTCIADPEKGGKVSASTAEGPITNGDKVAGGEYITVKATPN EDFEVDQWFVNTKELTYKKGSGSFTFALTEDVTIKVTFKSTLPPAEYAVTVEPALPSAEA GEVHLFQKNGIPFESGKSVVEGTEMYVEVTPAAKYELETLQVGETKIPAGDEKLVNIAGG VKYTFTVKAATKVQATFKLANAIEQLAQSDVAVYVTNGGTRLEIAGAAEGAEVRLYDYTG QLLLTSTEHTLNISALPAGSYIVLVGNYTTRIVK >gi|228307436|gb|ACLR01000179.1| GENE 65 75428 - 75682 270 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470674|ref|ZP_04055526.1| ## NR: gi|228470674|ref|ZP_04055526.1| hypothetical protein PORUE0001_0208 [Porphyromonas uenonis 60-3] # 47 82 1 36 50 68 97.0 1e-10 MSQKKPLARYARGYYILNAVTSSLETLHKGESLCCFRDSASVTYGGMLPSDLTLSALRLI LSAKSGQSCKQDCETVDFCNSLHS >gi|228307436|gb|ACLR01000179.1| GENE 66 75782 - 76108 370 108 aa, chain + ## HITS:1 COG:XF0224 KEGG:ns NR:ns ## COG: XF0224 COG1862 # Protein_GI_number: 15836829 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Xylella fastidiosa 9a5c # 4 108 10 120 120 74 40.0 5e-14 MNIFLLQAAQPAQAAPQGAPAWTSLVFFVVIILIFWLFFIRPQSKRQKKLQQQRDALAVG DSIITAGGVHGVIRKVYEQTFEVEIAKDVCIEISKSSVYPLGTDPNAR >gi|228307436|gb|ACLR01000179.1| GENE 67 76139 - 77152 1054 337 aa, chain + ## HITS:1 COG:no KEGG:PGN_1486 NR:ns ## KEGG: PGN_1486 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 333 1 332 335 146 29.0 1e-33 MRLNLTPKLRPGGEPVVRKQRIPGLKRLLAIAVWVLLATALWFMQTLSRGTTSIVHIPIV YEEMPKAIGLEGEQPTMLDVSVSAKGSQLLFRWMKGVTPIKLSMPQRVPLGGRVLFSNAV LTQKVRESLGSAVQIREIYPNQISLRAFPLQRKEVPVINRVSASAKDGYMVLPLTMTPTT VELYGSREALEGINEVRTKGLLYKNLSQDKVMRVPLEEIPNVHSSPDSVQLQISVVELTE RRIELPVVALNTPAGFVAKLLPARVSLTLTMPITDYNKPIGNQVSVVVDLSQISEAVQNG EKRPEMLPVRIEGLPDWVARATAAPKAVQYILEAAEP >gi|228307436|gb|ACLR01000179.1| GENE 68 77197 - 77850 475 217 aa, chain + ## HITS:1 COG:HI0890m KEGG:ns NR:ns ## COG: HI0890m COG0237 # Protein_GI_number: 16273638 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Haemophilus influenzae # 14 214 4 186 206 82 28.0 5e-16 MNKKKLPAPIPPRILGLTGGIGAGKSFVGQKLVQAGLPLMDSDAVARRAYTDSEQVRQQV IALLGAEVYDAEGKPRYDEIARKVFAPSDEGRSLLHDLEQIIHPYVSDQLKAWAMEQQAP EGWVVLESAILWQSGFYHLCDAVVIVTAPEAVRVARVQERDGASLEQVQARIDRQASYSF ATLQQAHPELPLYQIHNDGVQELEGQVAQLLAHLATL >gi|228307436|gb|ACLR01000179.1| GENE 69 77865 - 78563 448 232 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470792|ref|ZP_04055640.1| ## NR: gi|228470792|ref|ZP_04055640.1| hypothetical protein PORUE0001_1782 [Porphyromonas uenonis 60-3] # 45 232 1 188 188 297 100.0 3e-79 MESSVGLWSLTPFGADRGAEDIILLLLLMLLLLPALMQMWVGSLMSRSVDALLYNRGHIF FRNLVHRVSVGTYTLLGGLQRHLLVGVTGCLLLRYYGGLPTGELWTTLSQVGALALGSLI LSGLYLGVNRLLSEIYLDSAFYLHWVRHYSILEWLWPLPLYISSLLLLAGVWQDIALWLS VAVILLWRLAIILPTARWLGEAGVTPLLISLYLCSQEVAPLAYLVGFGMLIP >gi|228307436|gb|ACLR01000179.1| GENE 70 78604 - 79353 832 249 aa, chain + ## HITS:1 COG:no KEGG:BDI_3054 NR:ns ## KEGG: BDI_3054 # Name: not_defined # Def: uroporphyrinogen-III synthase # Organism: P.distasonis # Pathway: Porphyrin and chlorophyll metabolism [PATH:pdi00860]; Metabolic pathways [PATH:pdi01100]; Biosynthesis of secondary metabolites [PATH:pdi01110] # 4 248 5 249 253 249 50.0 5e-65 MSRIKKILISQPAPLMANPYTEVAEKYQVELDYKQFIRVETVAAKEFRQQRINPLDYTAI IFTSRTAILHFFTLMKEMRISVPDTMKYYCSSEMSAPYLQKFVNYRKRKVFFSPTGRTED LVKVITKHKSEKYLLPVAEEHSDKLSDLLTEAGIDYTKSVMYRTIPRELELEKPLPYDMI IFFSPIGITSLFENVPDFKQEDMIIATVGPKTALRAEELGLRVDIKSTGSRQDPPMPELL SNYLAEQEG >gi|228307436|gb|ACLR01000179.1| GENE 71 79350 - 80108 498 252 aa, chain + ## HITS:1 COG:PM1164 KEGG:ns NR:ns ## COG: PM1164 COG0759 # Protein_GI_number: 15603029 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pasteurella multocida # 178 251 6 78 86 91 54.0 1e-18 MTTEEGNPRSLQNRRLPKGERLYLREEIERLHDRGRSFVSYPIRVVWLAEPIATHSPGEQ AQVAVMTSVAKRRFKHAVDRNRIKRMTRSAYRLHKAPLWQVATQHHCTVRLALQSVAKTM PTYSELEQAVERAIARIVKEIDKSSPTSSVAKASPDRPEQTAKAPSVQANQANSQQLSLA IRLLSYPVKFYRACISPLLPPSCRFTPTCSQYALEALRVHGALKGTWLTIWRLLRCNPFN RHVGYDPVPPRR >gi|228307436|gb|ACLR01000179.1| GENE 72 80105 - 80833 504 242 aa, chain + ## HITS:1 COG:no KEGG:PG0199 NR:ns ## KEGG: PG0199 # Name: not_defined # Def: TatD family protein # Organism: P.gingivalis # Pathway: not_defined # 8 222 14 212 237 116 35.0 8e-25 MSNERHLSHLELLDCHTHSHEVNGLAIRSLTYEEWSGGVTIEEGQLYSIGLHPWSLPLAE RLTDLIDQMRSLLASTPQIVAVGECGIDKVRSNASLAEQRTWLEAQMRLACQLHRPILLH TVRAWSETIEIRRELAQEFDPLPPIVLHGFRAKGEVARMMLSHGFALSFGRHYDPAALRL AYEAHALLVETDELPQGLTHQKALAETYTHLAEALAITPEALAECVAATPFWQQVEWLGS LR >gi|228307436|gb|ACLR01000179.1| GENE 73 80870 - 81691 1099 273 aa, chain + ## HITS:1 COG:no KEGG:mru_1668 NR:ns ## KEGG: mru_1668 # Name: not_defined # Def: hypothetical protein # Organism: M.ruminantium # Pathway: not_defined # 15 262 4 248 252 87 29.0 5e-16 MTETDQLACSPEYQMLREQYDMLVAAYTTLVSQYQNMTDHEAPHLSALYMHYFGKLLYTQ LRLGLSIAALRLRRSLLQAYINRDQAPDLVEIDKQMAQQRLEYRRLLEQKLDQLKAAQAY WDAPRLTPEESKELKEIYKTLVKRLHPDLNPHYTEEDKKFFLAAVKAYKACDLQQLQAIL ALVNKGQPADIPLDSESLSVEIEKLQKKMRLLEAKLLKRSDSFPFDQKELLANPVAIQER QAELQAVIKELEESEQEMQTIISLMEEYKSHDL >gi|228307436|gb|ACLR01000179.1| GENE 74 81688 - 82077 545 129 aa, chain + ## HITS:1 COG:no KEGG:Apre_0734 NR:ns ## KEGG: Apre_0734 # Name: not_defined # Def: HIRAN # Organism: A.prevotii # Pathway: not_defined # 26 129 25 132 133 76 40.0 3e-13 MKHEIIPVSPELLALIGTEGINALGLPKREIFLLDIVVAGTTFCPIVQELYPMLLPDTVL RMVRQPHNEHDEHAIAIYYEEHRIGYVPQELNLVISRLMDAGKEFYARVVQVKKINEWIR ISAQLFMIE >gi|228307436|gb|ACLR01000179.1| GENE 75 82265 - 82780 315 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470801|ref|ZP_04055649.1| ## NR: gi|228470801|ref|ZP_04055649.1| hypothetical protein PORUE0001_1788 [Porphyromonas uenonis 60-3] # 8 171 1 164 164 249 99.0 3e-65 MRSYKCVVCALILSASMLLSCGSRRKLSTEVSQQQSQQRSELAVNHAEQHLRDTTLEEWE ILLLDTISPRQGAFAVGALAGDSLLAVSRSQMSGVRYIRARRTVVRQQDSVARKEEALQQ ANSQQEATTERQTAERRPSWLTGLLVWVVGSLLLVVGVATLMWILKRRWRW >gi|228307436|gb|ACLR01000179.1| GENE 76 82767 - 82979 328 70 aa, chain - ## HITS:1 COG:no KEGG:BDI_0444 NR:ns ## KEGG: BDI_0444 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 12 65 7 60 65 64 62.0 9e-10 MAQTIKPRGGKQLCLAFLLSISGIGLLAAGFTAPPLGVIDGSVLVAYGEVMTFVGALLGL DYKYKYHEEL >gi|228307436|gb|ACLR01000179.1| GENE 77 82964 - 83431 322 155 aa, chain - ## HITS:1 COG:HI1494 KEGG:ns NR:ns ## COG: HI1494 COG3023 # Protein_GI_number: 16273395 # Func_class: V Defense mechanisms # Function: Negative regulator of beta-lactamase expression # Organism: Haemophilus influenzae # 49 145 3 99 116 98 48.0 4e-21 MKPEDIKYIVVHCSATRSNMTYSAWQLDQDHRARGFAMAGYHFYITRAGVIESLRPLSMP GAHAIGYNRCSLGVCYEGGLRPDGTPWDTRTPEQRAAMLKLLQTLVAIHPKARIVGHRDL SPDLNHNGIIEPHEWMKACPCFDAFKEYLSLWHKR >gi|228307436|gb|ACLR01000179.1| GENE 78 83538 - 84092 675 184 aa, chain - ## HITS:1 COG:no KEGG:PGN_1986 NR:ns ## KEGG: PGN_1986 # Name: not_defined # Def: DNA-binding protein, histone-like family # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 146 1 140 158 79 35.0 5e-14 MAIKYAIQQINRKGLTLGTTTASYYAQAKYDGVTSQEDIAQMVSQISAISVGDVLSVMNT VSMLLSIELANGRIVDLGDLGRFRATLRSKSCDKPENFKREMIHGNRVIFVPGHQVRIKM KNASYLKSLPTGLPAEPGDKPSKTPNSGTTAGSGSQKPAPGNETPAPGNETGGGSGSKDN QTGM >gi|228307436|gb|ACLR01000179.1| GENE 79 84680 - 87977 299 1099 aa, chain + ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 198 396 91 290 292 125 44.0 4e-28 MSKHLRIWLFVLLSTLLTSTSLLAEGVITMSTSLAVGKYIFLRIRANDNFTIEGVGKSAQ TISGSVRYTLTSQTVTIRGDVTKLDCSQNQLTSLNVSSCTALTKLDCNENQLTNLNVSGC TALTELSCENASLTSLDVSGCTALTKLNCYNNQLTSLDVSGCTSLTSLSCFSNPLTSINL SNCTSLEEFTWERGKLTSLDVSGCAALTKLDCFNNKLTSLNVSGCTALTKLNCFNNQLTS LDVWGCTALRELYCSSNKLTSLDVSKNTALRELYCPSNKLTSLDVWGCTALRELYCSSNE LTSLDLSGCIALTELRCSSNPLTSINLSECQSLKEFSWTGGKLTSLDVSNCTALTKLKCN DNQLTSLNVSGCTSLKELSCSNNQLTSLKVSGCTALTELWCYSNQLTRLDASGCTALTEL DCYGNQINGEGMTKLVNSLPDRKGMSSGTLRVVDYSSKKKDKNRCSFADVATASEKNWAV EKRVRDSYWTSYPGVGEGIITMTTSRAVGEKIKLGIVANGDVVIEGVSEMPEPDQYRYGY NYTLTSQTITIRGDVTELACVGNQLTSLDVSGCTTLTKLDCSKNQLTRLDVSDCTSLGQL DCSDNPLASIDLSNCKSLKEFTWNKKELTSLDVSGCTSLTKLDCSFNRLTSLDVSGCSAL TELDCSKNQLTSLDVSGCTSLTKLKCYKNRLKGETMTQMVDGLSDRSEKESGSLQVVCDG SDENNLLRSDVLTVSRKNWRVFKYIVNTGKAVLYSGAGGDDEIVMTITQEQYLEGGIRLA ILADGDVTIEGVHEKRIFTDGSKHTYTLAGTQVTIRGDISELDCSENQITNLDLSKCNSL WTLNCSGNKLTNVDVSGCSLLTYLDCSNNQINGENMTRLVTNLPSRKGLRSGNLVIISRR ESEGNLCRPSDVAIAREKNWISTWKNGDLCKGIGEGVITMTTSLSVGQSFELSIVANEDV VIEGVREKSIRIGGLLFKVYTLTSQTVTVRGHVTSLDCSSKRLTSLNASGCATLTELDCS SNQLTNLNVSGCTALTKLDCSSNQLTNLNLSGYVALTKLNCSKNRLSNLNVSGCTALTKL DCSSNQLTSLGVSGCTALT Prediction of potential genes in microbial genomes Time: Fri May 27 10:00:08 2011 Seq name: gi|228307405|gb|ACLR01000180.1| Porphyromonas uenonis 60-3 ctg1118640599716, whole genome shotgun sequence Length of sequence - 39710 bp Number of predicted genes - 27, with homology - 26 Number of transcription units - 12, operones - 8 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 436 - 479 8.4 2 2 Op 1 . - CDS 575 - 3868 3510 ## COG0793 Periplasmic protease 3 2 Op 2 1/0.333 - CDS 3892 - 5961 2666 ## COG0326 Molecular chaperone, HSP90 family 4 2 Op 3 . - CDS 5992 - 9027 1625 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 9047 - 9106 4.0 - TRNA 9386 - 9472 47.2 # Leu GAG 0 0 - TRNA 9528 - 9614 63.7 # Leu CAG 0 0 - TRNA 9790 - 9863 87.1 # Asp GTC 0 0 5 3 Op 1 . + CDS 10807 - 12408 1998 ## COG0504 CTP synthase (UTP-ammonia lyase) 6 3 Op 2 . + CDS 12461 - 14341 2077 ## COG0706 Preprotein translocase subunit YidC 7 3 Op 3 . + CDS 14367 - 16271 1996 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 8 3 Op 4 24/0.000 + CDS 16300 - 17406 1129 ## COG0505 Carbamoylphosphate synthase small subunit 9 3 Op 5 . + CDS 17428 - 20652 3831 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 10 3 Op 6 . + CDS 20675 - 21409 526 ## COG4123 Predicted O-methyltransferase + Term 21479 - 21535 0.7 - Term 21944 - 21988 9.8 11 4 Op 1 . - CDS 22029 - 23063 1369 ## COG0611 Thiamine monophosphate kinase 12 4 Op 2 . - CDS 23067 - 24200 1004 ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase 13 4 Op 3 . - CDS 24246 - 26030 2078 ## COG0616 Periplasmic serine proteases (ClpP class) - Prom 26050 - 26109 5.2 + Prom 25994 - 26053 4.1 14 5 Op 1 . + CDS 26296 - 27027 592 ## COG0313 Predicted methyltransferases 15 5 Op 2 . + CDS 27024 - 27875 1194 ## PGN_0345 hypothetical protein + Term 27902 - 27949 9.0 16 6 Op 1 . + CDS 27975 - 28703 844 ## COG1011 Predicted hydrolase (HAD superfamily) 17 6 Op 2 . + CDS 28700 - 29431 619 ## PRU_2337 putative DNA repair protein RecO 18 7 Op 1 . - CDS 29544 - 30554 885 ## COG3943 Virulence protein 19 7 Op 2 . - CDS 30551 - 30751 183 ## gi|228470857|ref|ZP_04055704.1| hypothetical protein PORUE0001_1089 - Prom 30886 - 30945 4.4 20 8 Op 1 . + CDS 31253 - 32044 962 ## COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain 21 8 Op 2 . + CDS 32055 - 32984 709 ## BVU_1168 hypothetical protein 22 8 Op 3 . + CDS 32981 - 34174 1104 ## PG1333 hypothetical protein + Term 34177 - 34234 5.1 23 9 Tu 1 . - CDS 34300 - 34815 478 ## PG1063 transcriptional regulator, putative - Prom 34846 - 34905 1.6 + Prom 35681 - 35740 3.6 24 10 Tu 1 . + CDS 35826 - 37055 768 ## PG1881 hypothetical protein + Term 37080 - 37126 6.3 + Prom 37151 - 37210 1.9 25 11 Op 1 . + CDS 37288 - 38823 1738 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain 26 11 Op 2 . + CDS 38866 - 39042 147 ## + Prom 39076 - 39135 3.2 27 12 Tu 1 . + CDS 39277 - 39642 397 ## gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein Predicted protein(s) >gi|228307405|gb|ACLR01000180.1| GENE 1 24 - 389 397 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L >gi|228307405|gb|ACLR01000180.1| GENE 2 575 - 3868 3510 1097 aa, chain - ## HITS:1 COG:VCA0045 KEGG:ns NR:ns ## COG: VCA0045 COG0793 # Protein_GI_number: 15600816 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Vibrio cholerae # 719 1074 23 379 394 241 38.0 4e-63 MKRNTSLCKRLLLLLALSATWLVGAVAQETPRWLRYAQISPDGNQIAFCYQGDIYIVDAI GGEARLLTGSDGYESHPTWSPDGKRIAFMSNRDGHRSIYTMSALGGDVKRITHHSGNSHT VECYTPDGRFIIMSEALQQPATSALNPSGILSQLYMIPVDGGTPMLYNARPLEAVTFSHR GDRYVAQDIKGFENKWRKHHTSSVTRDIYIVDPKSGVTTACTLEPGEDLSPVFGPDDQTV YFLSERGKSNSLNVWKQRIGEQTAQQVTSFRNHPVRFLSISRSGRLCFAYDGDLYTMTEG RSPQKVQITLRSEGPKDKVYRRTASSGGSSFTPSSDGKQLAFIMRGDVYVTSVEHGTTKR ITQSSGAEESVTWSPDSKTLVYDSRRDGKHILYKATIASDKELDFASATIIKEEPLMPEC KMEQALPQYSPDGKQIAFVGDRKCIYTYDIASKKLTQVTSGKDQPEMHGYISFEWSPDSR WIAFEYTPNRHAPFGDVGLVRATGGEVINLTNTGYFSNLTGWVMGGNAILFTSDRYGMRN HASWGSMSDAFLVFLNRKAYEKFNMTPEERDLYDRAGLDTLQYGSDPVPAENAKKKKDET KPIIVEVKGLEDRIVRLTPNSSDLADAYVDADGKNLYYLSAFEGGYNLWHTDLRKGNTSM LRQLELSGSAYMRPTPKGDKIFVVSSGRVQCFTPASKKFESVNYRARVELDSYAEREAMY DFMVREEGLRFYRADMHGVDWKGLTDHYRQFLPHIATSEDFSEMLSEILGELNVSHTGSG YRQSSSEPPTAHLGLLYNWYALPLEGIIVDEIVPGGPFDTYLTKLQPGDRIVAINGTRID HHTDWRNLLAGATGTLTAVTFYSNKEQKEITEAVRPISSGRLSGLLYKRWVKAREAEVQR LSNGRLGYVHIPSMGDDAFRTVYSEVMGKYYQCDGIIIDIRYNGGGRLHEDLETFFSGKA YLQQEVRGQNYCTMPSRRWTKPSVMLVCEADYSNAHGSPWVYQTLGMGKVVGMPVPGTMT SVNWVTMQNPLLFFGIPAVGYRTQQGDFLENKQLEPDVQVPLDYSRVLDGHDSQLEAAVR VLLEEVKAHPQPTFPKR >gi|228307405|gb|ACLR01000180.1| GENE 3 3892 - 5961 2666 689 aa, chain - ## HITS:1 COG:alr2323 KEGG:ns NR:ns ## COG: alr2323 COG0326 # Protein_GI_number: 17229815 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Nostoc sp. PCC 7120 # 5 595 4 620 658 456 41.0 1e-128 MNSNKGQIGVTSENIFPVIKKFLYSEHDIFLREIVSNAVDATTKLRTLIARGTEVGSTED LRVEVLLDKEARTLTVRDYGIGMTADEVERYINQIAFSGAEDFLEKYKDASGNIIGHFGL GFYSAFMVSERVEIDTLSYQPDAQPVHWSCDGSPAYEMSTGSRTERGTDIIMHLDEESSE FLEQARIEELLTKYCRFLPIPIIFGKKQEWKDGKMQDTDEDNVINDTNPLWLRKPQDLTD EDYREFYRKLYPGADEPLFWIHLNVDYPFTLTGVLYFPKVSNKVDLQSNKIKLYCNQVFV TDEVENIVPMYLTLLHGVIDSPDIPLNVSRSYLQSDSNVKKISSYITKKVADKLEEIMKN DRPTYEAKWPDLSVFIHYGILTDEKMEERALKSLLLLEDVAGKFYTPEEYRELVKSNQTD KDGKLVYLYATDPEAQYSYIQAAEAKGYNVLHMHGMLDTPLLNHLEQKWENTHFVRVDSD TVDQLIQRDDTTTDASAHETEIMRSLFAKALPTGEVNYQVFLRNMGQEAQPAVITRMEWM RRMKEMSQYQPGASFYNSLPDSYSLVLNADHPLIKSLLEGEGKELEPQLATLRSQLATLQ EQVTELDKEAKEQTEPTEEQKKELQDKKEALHKQQEELHGEMQSSFDQYAEKQPMIRHIV ELALLSAGELRGVALQEFIKRTTELLSSK >gi|228307405|gb|ACLR01000180.1| GENE 4 5992 - 9027 1625 1011 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 309 979 145 814 815 630 48 1e-180 MNFTPYQISNQVVRAFARACAIGLRSGKQLDLSKPLFIDLARSKDTFPSVLILHALNIPL SQLQYTLCEEPTMTGYYKQIQSIIDQSQYTMPSAELVRYYHDQLKSILEGAWEIFPNHDD FPVIDAPRIVAYMLHEGQPDIYPWPYITSRPAKEDILASYVQNSLEHSAKATSVEVQAIA SAEAEEQMLQTILSTAMMGMPDALSEEMRQELNIASWQESFERTFSDLSASDDTQAKEPA SDFEPNGIVKQVEVFVSQNNPNGEPDKNSMRAVPLEELPEEIQEHIKAIIRHEQSKVTQN SGSNPFDLSAEGESGKEEKASKKSSKRSKTPALDAFATNLNQLAKDGKLDPMIGRAKELE RITHILCRRQKNNPVLIGEAGVGKTAVAEGLAQLLARDEVSYKLRGKVLYSVDLAQMLAG TRYRGDFEERFKALLKEAEMLGNTILLFDEIHTLMGAGSTEGSMDASNMLKPALARGTIQ VIGATTLDEYRRTIEKNGALARRFQKVMIEPNTPEETLEILRQLRGRYEEFHHVHYSDEA LIAMVRLTNRYIYDRYFPDKAIDVLDEVGASMHLKGKLGESDKVASLRQQLRTYRASRDK AVRESNYDTAMTLKVQEELVQKEVDEELEKAHAEEAGTYLPVDEEAVAKTVSMMSGVPIS NISQEEHAKLRQMRQTLKDIVIGQDDAINKVVKAIQRNRLGLGSDKRPIGSFLFLGPTGV GKTYLAKKLAELLFDDEDALIRIDMSEYMESFNVSRLVGAAPGYVGYDEGGQLTEQVRRK PYSVVLFDELEKAHPDVYNILLQILDDGFITAADGTHVSFKNTVIILTSNIGTRQLKDFG AGVGFRQEVQLSQTEQEALLSKQLKKHFSPEFLNRLDDTIYFASLEKEDIRKIVDVELRP IMARITEQGYNLVVTPSAKDKLADVGFDLEYGARPLRRALRHWIEDKLTDLILDGEANVG DTVRLRVSEGELLMEVDKRLPQKESKAKSDEATLGFALPSFTSTSQKGGER >gi|228307405|gb|ACLR01000180.1| GENE 5 10807 - 12408 1998 533 aa, chain + ## HITS:1 COG:BS_ctrA KEGG:ns NR:ns ## COG: BS_ctrA COG0504 # Protein_GI_number: 16080768 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Bacillus subtilis # 4 529 2 527 535 600 54.0 1e-171 MTDTRYIFVTGGVVSSLGKGIVAASLGKLLQARGYKVTIQKFDPYINIDPGTLNPYEHGE CYVTEDGHEADLDLGHYERFLNIRTSRENNITTGRIYQSVINKERHGDYLGKTVQVIPHI TDEIKRSVRRLGMKHHYDFVITEIGGVVGDIESLPFLESVRQLKWELKNHCVCVHLTYVP FIAAAKEYKTKPTQHSVKQLQEEGIQPDILVLRTEHKLSNEILDKVALFCNVSKESVFQS IDMPSIYEIPLLLQEQGLDRQVIQQAGLEVGETPKLEDWRDFVHRMKSATKELHIALVGK YVELQDAYKSIDEALLQSCVYHDRKLKLTSIHSESITKDNVEKLLSGYDGVVVAPGFGSR GVEGKLIALEYTRTHQIPTLGICLGMQCMAIEFAQNVLGLEDCNTTEIKPTATNKIIDLM DEQKAVSDLGASMRLGAYECELKEGSKLAEAYGKLLISERHRHRYEFNSQYRTAFEEAGF KCVGTNPETGLVEALELEGHPWYIGVQYHPEYSSTVLQPSPIFMAFISAISNR >gi|228307405|gb|ACLR01000180.1| GENE 6 12461 - 14341 2077 626 aa, chain + ## HITS:1 COG:VC0004 KEGG:ns NR:ns ## COG: VC0004 COG0706 # Protein_GI_number: 15640036 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Vibrio cholerae # 9 573 7 525 541 154 27.0 3e-37 MNKSNLIGIVLIGVVIVVYSVFLLPKQKPASTPTPATDTTQVATNAATAPAEEGQTTSDA AKPAPVDSLYAFSQLMAQSAKEYTMSNDKLSVTFTTQGAMPVSAELADYKSYDSTQVRLF APGDFVLNLPIRTNQNQILETKDLIWQASQPNDSTLQMTLPIDSSSYLRIIYTMPHEGYM LGMAIEAQGLGSLLHSNNAMQDLEMSLRIPRQELSWKFENQYSTIYYKYPGDDVEKLKET KMTQEKDVREKIQWVAMKDKFFSTVLIGLGDTRLEENKMSFTTEPKETNYIKDCKYQGAF AMDIRDGRKANFALFMGPLDYNMLKSIDAGVDKAQRLDLKRMIYVGGSLFRWINVTLIRP LINFLQGFISNWGIIILLLTIIIKLVLSPLTFKSYLSQAKMRVLKPQVEAINAKYAGDDQ QMMMKRSQATMQLYRNAGASPMSGCLPMLLQMPFLIALYMFFPTAIDLRGESFLWVKDLS TYDPIISWSTDIPFITGLLGGNHISLFCLLWAVTNIIYSRYTMSMSGGASGSQMKMMRFM PYMMTIMFFIFFNSNAAGLTYYYFISTLITILQFLASRLLINEDKVLARLQENQKKPKKK KGFMARLEQMQKEQEKLMREQNKKRR >gi|228307405|gb|ACLR01000180.1| GENE 7 14367 - 16271 1996 634 aa, chain + ## HITS:1 COG:PM0701 KEGG:ns NR:ns ## COG: PM0701 COG0034 # Protein_GI_number: 15602566 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Pasteurella multocida # 43 515 25 419 504 106 26.0 1e-22 MEPLKHECGIALIRLRKPLEYYAEHYGTTLYGLNKLYLLMEKQHNRGQDGAGLAVVKTQA PPGDEYIYRERALGSNAITEIFKKVHETIAKAHDGTTPTVEEATQAERYTPFLGDCYMGH LRYSTTDLAGLTFVHPMIRRSNWRAKSLAVCGNFNLTNVSGIFDEITAIGQHPRTSSDTH IILDQVGHRLDREVERLYKIAHEEQGLEGMDITHFIEDHLDLTNVLRRTSPIWDGGFVMC GMTGSGDSFVLRDRNGIRPAFYYIDDEIIVVASERPVIQTVMNVTYDKVLELNPGEALTI DNKANPSITQILEPGELKACSFERIYFSRGSDRDIYRERKMLGQLLTPAILREIDGDLTH SVFSFIPNTAEVAYFGMLEGLNLELNKRKAEQIEQALGAPDFDEQLKHILSQRIRSEKVA IKDIKLRTFISEGNTRNDLATHVYDVTYGSIERGVDNLVVIDDSIVRGTTIRQSILTILD RLGPRKIVFVSSAPQIRYPDYYGIDMRHVDEFIAFRAMIALLQERGQQRMLDEAYREAMA LREHPLTEYVPNVIKTLYAPFTEEEISAKIAELVKSDGIKAEVSIVYQTVEALHEAIPHH PGDWYFTGDYPTPGGSHLVNDAFIVYYEQQYNRK >gi|228307405|gb|ACLR01000180.1| GENE 8 16300 - 17406 1129 368 aa, chain + ## HITS:1 COG:YOR303w KEGG:ns NR:ns ## COG: YOR303w COG0505 # Protein_GI_number: 6324878 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Saccharomyces cerevisiae # 3 363 2 373 411 332 44.0 8e-91 MQTSTQRKATLTLQDGSTYTGWHFGATRQLAGEVVFNTAMNGYTESLTDPSYMGQILVMT YPMVGNYGVPAATRDEYDIPRYYESDGCLMRALIVNSYSPEYSHWNAEQSLGDFMAEQGV VGITGIDTRALTKHLRDHGIQVGTITIEGETSPIEPAIGDQNLVAQASCHEPRIYGSGDC HIALIDCGLKDNILRSLIDERFTLHRVPWDYPLEQIEGLRGVFISNGPGSPTCCKETIRQ IQYAFERQLPTYGICMGNQLMALASGAKIYKMKYGNHGHNQPVRRVNSTQCLITSQNHSY AVNSATLPQGWEEWYTNLNDGTNEGLMHTDLPFRSVQFHPEAKGGPLDALNFFSDFQDTV LNYPQLSK >gi|228307405|gb|ACLR01000180.1| GENE 9 17428 - 20652 3831 1074 aa, chain + ## HITS:1 COG:YJL130c_2 KEGG:ns NR:ns ## COG: YJL130c_2 COG0458 # Protein_GI_number: 6322331 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Saccharomyces cerevisiae # 4 1070 2 1067 1070 1191 55.0 0 MTQRKQYNKILLLGSGALKIGEAGEFDYSGSQALKAVKAEGIKTVLINPNIATVQTSEGV ADAVYFLPVTPYFVERVIERERPDGIMLAFGGQTALNCGVQLFQSGVLERYGIDVLGTPV ETIMATEDRELFVEKLDEIEVKTIQSHAVTTMEDALVAANQLGYPVIVRAAYALGGLGSG FCDNDEELRVLAEKAFAFSPQLLIEKSLRGWKEIEYEVVRDAYDNCITVCNMENFDPLGI HTGESIVIAPSQTLSNDEYHKLRTIAIKIIRHLGVVGECNVQYALDLYSEDYRVIEVNAR LSRSSALASKATGYPLAHVAAKLGLGYGLFEVQNAVTGSTPAFFEPALDYCVCKIPRWDL GKFHGVSRQLGSSMKSVGEVMAIGRTFEEAIQKGLRMIGQGMHGFCENKELVIPDIDTAL REPTDTRIFVISKAFRQGYSVEQIHELTKIDRWFLYRLQGILETAETLGTCESIESLPAE LLRQAKEQGFTDFQIARAVTKEYKKPLHKEADQVRQHRKSLGILPYVKQIDTLAAEVPAE SNYLYLTYHGEEHDIATEQDGKSVIVLGSGAYRIGSSVEFDWCGVNALHTIRKAGLRSIM INYNPETVSTDFDMSDRLYFDELTFERVMDIIDLEAPKGVILATGGQIPNNLALRLAANG VTILGTQAEDIDHAEDRHKFSAMLDELGIDQPEWSELTTIEDIDRFVDRVGYPVLVRPSY VLSGAAMNVCSNQEELLRFLQLAANVSQDHPVVVSQFVEHAKEIEMDAVADHGEIIAYAI SEHIEFAGVHSGDATIQFPAQKLYVETVRRIKRISRQIAEALHISGPFNIQFLARGNEIK VIECNLRASRSFPFVSKVLRLNFIDLATKIMLGLPYEHPTKDAFSLDYVGIKASQFSFSR LQKADPVLGVDMVSTGEVGCIGEDTEEAILKAMLSVGHHIPERGILLSTGGAKQKADLLE ASQLLHKKGYKLYATAGTQHFLEENGVPATLVHWPDSTEQPQALDLLHQHEVDLVVNINK NLSTGELTNGYKLRRAAIDLNIPLITNARLAATYIKAFCTLSLEELEIKSWQEY >gi|228307405|gb|ACLR01000180.1| GENE 10 20675 - 21409 526 244 aa, chain + ## HITS:1 COG:yfiC KEGG:ns NR:ns ## COG: yfiC COG4123 # Protein_GI_number: 16130500 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Escherichia coli K12 # 5 239 53 283 285 112 33.0 8e-25 MDKPFCMRHYALMQGACAMRISTDALFLGAWARTAHTAGQVLDVGTGTGILSLMLAQTYP SAMVTAIDIDDEAVRTAQDNFSRSPYSNRLTALSCDITAPELALPLRHYDLIVSNPPYYD GLQPATASLRQARHTEEGFAPHLLFRYLEPLVAPEPTLCLVTPVEALPLLRREAVLHRYN LKRLCGLYHHVGQPAIRLLTQWHRSDTPSAPCLSERLAIRTAQQRYTDEARDLLRPYLLD EYLD >gi|228307405|gb|ACLR01000180.1| GENE 11 22029 - 23063 1369 344 aa, chain - ## HITS:1 COG:BS_ydiA KEGG:ns NR:ns ## COG: BS_ydiA COG0611 # Protein_GI_number: 16077657 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Bacillus subtilis # 8 343 1 324 325 172 34.0 1e-42 MNTPISDLGEFGLIRKLTEQFAIISPDRVRMAVGDDAAILQMKPDEELLVTTDMLLEGVH FDMTYMPLKHLGYKAVVVNVSDICAMNGIPQQITVSLGISARYTAEMIEELYKGIELACQ HYQVDLVGGDTCASQNGLAISITCLGSVTKGEAVLRSGAQPNDLICVTGNLGAAYMGFQL LEREHRTFLSAPTEEFEPHFEGYEYLIERQLMPSAQRWLRGKLAEQGVTPTAMIDISDGL SSELLHIAERSQVGVRIFEDRLPLDRETLALCEEMNMSPITAAFNGGEDYELLFTVPLAQ VGQVSDIEGVSIIGHVTDASEGCRWVSTDRAEHELKAQGWNAFS >gi|228307405|gb|ACLR01000180.1| GENE 12 23067 - 24200 1004 377 aa, chain - ## HITS:1 COG:PM0860 KEGG:ns NR:ns ## COG: PM0860 COG1663 # Protein_GI_number: 15602725 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Pasteurella multocida # 10 316 12 288 325 113 29.0 5e-25 MDQTPKINRWLLPLSALYGVGVSLRNSLYNMGRLKSHSFPIPIICVGNLAVGGTGKTPMI EHLVRMLMGDLRIAIVSRGYRRKSMGLKVAELGDSASRIGDEPAQILRKFGDKIQIIVDG NRVRAINYLVNQPYSQRPDVILMDDGFQHRSVQPSFSILLSSYNRLMTEDALLPAGRLRE SARGRYRADVVVVTKCPTLLKPIDCTFTERRLDLYPHQRLLFSEVKYEDPVPIFRRNAGA TKIDTNAVVIALSGISHPEEFFAYVERGFSRVVTLPYADHHHYSRRNVTTWENILTDYLA RGVEVVFLCTDKDAVKIYELESYMSSELRERFLRLPIQVRFKSHGEEDLRKLVLEHIAQF TRTQAQEEEHKEEEEKE >gi|228307405|gb|ACLR01000180.1| GENE 13 24246 - 26030 2078 594 aa, chain - ## HITS:1 COG:all4590 KEGG:ns NR:ns ## COG: all4590 COG0616 # Protein_GI_number: 17232082 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Nostoc sp. PCC 7120 # 48 516 47 518 609 314 38.0 3e-85 MNSFWKTFFATLLAIVVSGVIFVSLSIIALIGIFAGLSVGANNETQKIKDGSILKINLTN ISDTYVSNPWAELGFDKGDRCQDLPLSYVIEAIDEAKNDDRIKGIYLNMMDPGCGFASAE ALRGALEDFKQTGKFIVSYSDFYSLKGYYLASVADQLYVNKEGSIAFDGLAGGAVFFKDL LDKIGVEMMVFKVGTFKSAVEPYMLNSMSEANRTQISSYLGDIWGRILGEVGTSRGLDSV RLQALADSMQSVQTTDSYLANKLIDGALYQDQALEQLCSLVDVDGPDDLYFVSLRDVYAT RSSARSGEANIGVLFAEGEINVEETDSPFNTKKVVTDQLADRILEMGEDDDYDALVVRVN SPGGSSYISEQLWYAVHKASQNKPVVISMGDYAASGGYYMSSGASYIFAEPSTITGSIGI FGVVPNATKLANKIGVHQDVVKTARYADLGALDRPWTEEERGLFQQYVNRGYELFLKRVS EGRGMTRDQVDSIAQGRVWTGAQALGLGLVDELGGLQDAIAYAATQAGYDSYHVTYARRE VNVLQELFNRSTQTVRMKLMNSWFTEEEIRYIDQLRELRAMSGLQARLPMVVDI >gi|228307405|gb|ACLR01000180.1| GENE 14 26296 - 27027 592 243 aa, chain + ## HITS:1 COG:sll0818 KEGG:ns NR:ns ## COG: sll0818 COG0313 # Protein_GI_number: 16330705 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Synechocystis # 1 228 1 230 279 220 50.0 1e-57 MAQLTVVPTPIGNLGDITLRGLEALREADLILAEDTRTSSVLLRHYEIAKPMESHHKFNE YKTSERLAQRIAEGTSVVLISDAGTPGINDPGAMLIRACIDAGVTVTCLPGATAFVPALV ASGLDTSRFCYEGFLPVKKGRQTLLTALATETRTIIIYESPYRVCRTLADLITYFGAERQ AATCRELSKLHEEVRRGTLQELSDHFAETAPRGEFVIVIAGATPTKPSKKINRHTTEDTT KQL >gi|228307405|gb|ACLR01000180.1| GENE 15 27024 - 27875 1194 283 aa, chain + ## HITS:1 COG:no KEGG:PGN_0345 NR:ns ## KEGG: PGN_0345 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 17 281 13 282 284 209 47.0 1e-52 MKQSLSLTFSALVLSLLMLTACNKNNQEDQEHQDELTELQSLRTQVAEQDSLINMVIQNF AQIQQLEGMISLNGNDELPQSQRAKIEDNLRLINEKMESNRQTIALLNKKLAQSGNKNTS LQRTIGTLQEQLNAKNAEILDLTEELKRKNYAIGVLDSMVTGLSNNVENLSKTSAAQQAE LERQDAALNTVRYCIGTSRDLKDMNIIRNGEVVTEGYQSDYFTQIDLRRVTSIPVYAKKA ELKTKHPKSSYRLVKGEDKMLTLEITNPQEFWSLSKILVVQIY >gi|228307405|gb|ACLR01000180.1| GENE 16 27975 - 28703 844 242 aa, chain + ## HITS:1 COG:VCA0608 KEGG:ns NR:ns ## COG: VCA0608 COG1011 # Protein_GI_number: 15601366 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Vibrio cholerae # 1 231 1 222 224 112 32.0 7e-25 MKYKALLFDLDDTLWATFDNNKASLHRLYNEEGWGAYYDTFEDYFAVYFPHQEQLWDDYR KGYISKEQLLLDRLRYPLRGLVSWSDQQVMELNQRFINYVQQQTALIPHALEVLAELHRS YTIVIVSNGFEETQYGKINGSGLAPYIDKVVLVDHVGVPKPATEFLDYALKAVGCSRQEA LVIGDSWPSDILCALNSGIDSVWYNLWQVPMPTYDQQHHSVIEIRDLRELLPLLTPSTAP RL >gi|228307405|gb|ACLR01000180.1| GENE 17 28700 - 29431 619 243 aa, chain + ## HITS:1 COG:no KEGG:PRU_2337 NR:ns ## KEGG: PRU_2337 # Name: not_defined # Def: putative DNA repair protein RecO # Organism: P.ruminicola # Pathway: Homologous recombination [PATH:pru03440] # 1 234 1 227 241 63 24.0 8e-09 MITTVEGVVLRVIPYSDRSLIATLYTDLWGAAAFSVPIGGRSRATSNLFQPLRGLQLTTP SPASQPVKLIRQVQLVRGALPLAQRPAASGYFLYLAQLLRELLAQEPEDLRLYNIIVQAL DQLDRIESLEELQGFDLALLVSILRAKGYLPEGLEMRSLDSESYRTHWLDLEQWTILPLR TDYAVPLTPELQSALPRLLRYDLEHFAPNSFTTAEYETLRRLLLHFTELHSPSFRIKHIT PLP >gi|228307405|gb|ACLR01000180.1| GENE 18 29544 - 30554 885 336 aa, chain - ## HITS:1 COG:STM3755 KEGG:ns NR:ns ## COG: STM3755 COG3943 # Protein_GI_number: 16767039 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Salmonella typhimurium LT2 # 1 321 6 333 345 247 40.0 3e-65 MSKSKADQMLIYQSIDGKIKVDVQFNQDTVWLSLDQMATLFGRNKSTISRHIKNIFEEGE LSSNSVVAKFATTASDGKEYQIDYYNLDVIISVGYRVKSLQGTQFRIWATQQLREYLTKG FALDDERLKRGSAYNYFKELLDRIREIRLSERLFYQQIKDIYATSIDYNPSDEMTIAFYK EVQNKLLWAVSGKTAAELIYYRSNAALPMMGLTSTELEGKVRKRDITIGKNYLNEQEIKQ LKLIVEQFLAYAEAQAQAEKPMYMRDWIQKLRLVLTMNDKNILEHAGAISHEMAVRKASK ELQAYNAHQREMEHLESIKELDYDIKCMSRLSHKEE >gi|228307405|gb|ACLR01000180.1| GENE 19 30551 - 30751 183 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470857|ref|ZP_04055704.1| ## NR: gi|228470857|ref|ZP_04055704.1| hypothetical protein PORUE0001_1089 [Porphyromonas uenonis 60-3] # 1 66 1 66 66 108 100.0 1e-22 MLSNQHDTNSANDYSAFAMHGFLKTKMSVGVADMWADLRSFVQEVLRLQAFFQQWHMNAT MTQQEL >gi|228307405|gb|ACLR01000180.1| GENE 20 31253 - 32044 962 263 aa, chain + ## HITS:1 COG:CAC3212 KEGG:ns NR:ns ## COG: CAC3212 COG3956 # Protein_GI_number: 15896459 # Func_class: R General function prediction only # Function: Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain # Organism: Clostridium acetobutylicum # 12 258 229 479 483 213 43.0 3e-55 MIHSKDERLEAFSRLLDVLDNLRTHCPWDRKQTNESLRANTIEEVYELSDALQQGDTNAV CKELGDVLLHVLFYARIGDEQGNFDIVDVCNKLCNKLIFRHPHIYATEQVEDAGQVVQLW EQVKQKEKDGNKSVLSGVPSALPALIKAYRIQDKARAVGFDWQEREEVWAKVREELQEVE QEMTAGSADDLEAEVGDLLFSIVNAARLYGVNPDNALERTNRKFIERFGYIERTAKEHGK SITDLSLEEMETLWQEAKKGVNQ >gi|228307405|gb|ACLR01000180.1| GENE 21 32055 - 32984 709 309 aa, chain + ## HITS:1 COG:no KEGG:BVU_1168 NR:ns ## KEGG: BVU_1168 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 6 308 4 298 298 213 37.0 7e-54 MIACSLSKQTCPHCHNSSYTELWECEDHLVSHEHYAIGRCNQCGLLQTLTPPPAEELGHY YDSSDYLSHQTEGRGGMARIYRAVKRYRIGRRVRTARKLCATAPQMMLEVGAGVGAFANA MQERGCKAYVVEQSKAARELCAQKIPSEQLFATTQELVAHTDLSGQLDLICLWHSLEHLP DLADQLEIYDKLLKPGGALCIAVPNAQSFDASYYRELWAAYDVPRHLWHFTPYSMRQTVE AHHFSLQKIRPQRLDVYYIALLSESYKQGGRTNWVTWLKAFGVGFSYHVRSLFTPMRASA LLYHFVRQA >gi|228307405|gb|ACLR01000180.1| GENE 22 32981 - 34174 1104 397 aa, chain + ## HITS:1 COG:no KEGG:PG1333 NR:ns ## KEGG: PG1333 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 36 336 41 328 399 128 30.0 3e-28 MMKARQLLGAILLVLAPFSVLSANNVAELGVDSVHLRMGVDAVTFFRNNEYHSDYQLGYT LPGWQLSPTVALEHGKVRLVGGVYSLTLLGAQRYPRGGWYDHMPHWGEKPEKQGSGVHLR PILSLQYRPNDHINVSMGTLLGAKTLALRGVASSIVDQGGALSLVSPLYDPEYSFTRDPA QGAMIQLSYPRFDLEALVDWQGFIFPGETHQEAFSALLSTAYQLHSSDSWKTQLELQATA HHRAGEIQQMSPPDTLHTYLAGATGVTTQYKYASQGTVEGSLHFLDSSLRDGKPEPPLGY GFYGRLAWRHKLLRLVVDATYGYNYYAPYGGPLLSSARTAGDQWRLGIYPALDVPLSGFG DLRLEGALWWNRRTATPSRLSHMLSLTLTFHYDKVFR >gi|228307405|gb|ACLR01000180.1| GENE 23 34300 - 34815 478 171 aa, chain - ## HITS:1 COG:no KEGG:PG1063 NR:ns ## KEGG: PG1063 # Name: not_defined # Def: transcriptional regulator, putative # Organism: P.gingivalis # Pathway: not_defined # 2 171 1 146 146 83 34.0 3e-15 MLIESEGIIERVRYMMESMELNATAFATEAGITPSVISHMLNGRNRPTIETLNNIITAYP SWSYEWLLFGKGAPKREEEKSVTTSLEGTLFGSYEGAGASSLQPTQPEQRELTSEHTSPS QGAPFPFTREEVEQIRQMLHQPDAPEREVHEIRIFYSDGSYEIFVPQSNRK >gi|228307405|gb|ACLR01000180.1| GENE 24 35826 - 37055 768 409 aa, chain + ## HITS:1 COG:no KEGG:PG1881 NR:ns ## KEGG: PG1881 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 375 96 447 480 104 26.0 8e-21 MSLPATSYYLVAVLNATPAVQNTFGQGGAWSNLYESTYRLKSLYSESEKKVTSVVWSNDQ GPIKIEKSAFDKGASPVQVPLTRTVARVRLFGDPKVPQYMSLDLTNGGTFSVGCRAVETL LMRELAPLIGVAENKMEQPGDGSSFASRYAYCPGYKEIANDNQSDYKDLLWTYRHFNESK TNCNLESLKLIPKTVDECDLTQEMYYVSETTVDPHHFTYAFLPSLLVGYKVYPTSLNELS DFKSDEGWVSFNGHYYRGHDFTTYMKAILKRNKSTSETKPVVTIPTGYPQDLQVVCEEYV KTCGDKMLLKATGYQGELYPIDFKGLRYYLRSYNYYYLPIQHAPDQEGYGRYGIIRNNDY RIEIKSISDFGSPVMMNIKLHPEEYAPKQAISSTLTLTPLEEHNSTANL >gi|228307405|gb|ACLR01000180.1| GENE 25 37288 - 38823 1738 511 aa, chain + ## HITS:1 COG:STM1801 KEGG:ns NR:ns ## COG: STM1801 COG3263 # Protein_GI_number: 16765142 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Salmonella typhimurium LT2 # 7 481 8 475 577 266 36.0 7e-71 MILSTETFLIIGSVLIFVAILLGKVGARFGVPALLLFLLTGMLFGVDGIGIHFSNMRGVQ SIGIVALSIILFSGGMGTKLSQIRPVLGEGIALSTIGVLLTTLFTGLLIFGVTHYLFASL TFSLPIAILLAATMSSTDSASVFAILRSQRVHLKENLKPLLELESGSNDPMAYMITVALI GFVMGGETSLWGVAGSLVLQFFFGIIGGFFFGWLCVKMLNNLNIQNEVLYPIALLCLVMI TYVSTWYIGGNGYLAVYIAGIYLGNSKITARKSVYGFFDGITWLVQIILFIMLGLLVNPS DMLPVLIPTLLIAVLMMFVARPLACFVTLLPFRNLSFKARLFTSWVGLRGAAPILFATYP VLAEVPQSNHIFTIVFVITLVSLICQGMTITPVARALHLAEPAPPEGYFMGVEIPEETNT NMEERVVVEEMLTEGHLLKDLALNPEELVILVRRHDRYIVPKGGLHLHPDDILLIVSERR EAETIKAELPTTDLFSRLRKTLGQVTSRKAK >gi|228307405|gb|ACLR01000180.1| GENE 26 38866 - 39042 147 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSSMALSRKLKDSSVEILNYPARNEEILRNFDLILPKFHFILPNFYFPVPWRIVVFQ >gi|228307405|gb|ACLR01000180.1| GENE 27 39277 - 39642 397 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 10:00:54 2011 Seq name: gi|228307402|gb|ACLR01000181.1| Porphyromonas uenonis 60-3 deg1118640599738, whole genome shotgun sequence Length of sequence - 724 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 100 - 324 379 ## gi|228471228|ref|ZP_04056041.1| hypothetical protein PORUE0001_1418 + Term 349 - 401 11.1 Predicted protein(s) >gi|228307402|gb|ACLR01000181.1| GENE 1 100 - 324 379 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471228|ref|ZP_04056041.1| ## NR: gi|228471228|ref|ZP_04056041.1| hypothetical protein PORUE0001_1418 [Porphyromonas uenonis 60-3] # 1 74 325 398 398 148 100.0 1e-34 MKANIPGTDPLIKDFMTKNGFTYQGMEKVSIYDIEADLYQYYNDQLKVYFEYSLVGGAFP TAMGVYTKTPTVEF Prediction of potential genes in microbial genomes Time: Fri May 27 10:01:40 2011 Seq name: gi|228307264|gb|ACLR01000182.1| Porphyromonas uenonis 60-3 ctg1118640599616, whole genome shotgun sequence Length of sequence - 152717 bp Number of predicted genes - 144, with homology - 135 Number of transcription units - 61, operones - 34 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 - CDS 50 - 1375 1384 ## COG2217 Cation transport ATPase - Term 1451 - 1496 -0.4 2 1 Op 2 . - CDS 1551 - 1943 544 ## COG2217 Cation transport ATPase - Prom 1966 - 2025 2.3 - Term 2217 - 2266 11.4 3 2 Op 1 . - CDS 2309 - 2521 100 ## 4 2 Op 2 . - CDS 2419 - 3102 692 ## BDI_0140 putative alkaline protease AprF 5 2 Op 3 . - CDS 3099 - 3731 552 ## PRU_0267 outer membrane efflux protein 6 2 Op 4 . - CDS 3728 - 4648 1181 ## PGN_0874 hypothetical protein 7 2 Op 5 . - CDS 4654 - 5334 563 ## gi|228470982|ref|ZP_04055827.1| hypothetical protein PORUE0001_0313 8 3 Op 1 . - CDS 5473 - 5928 427 ## gi|228470938|ref|ZP_04055783.1| hypothetical protein PORUE0001_0314 9 3 Op 2 . - CDS 5944 - 6393 446 ## gi|228470964|ref|ZP_04055809.1| hypothetical protein PORUE0001_0315 - Prom 6417 - 6476 2.8 10 4 Tu 1 . - CDS 6604 - 6927 693 ## PGN_1995 hypothetical protein - Prom 7030 - 7089 2.9 + Prom 6877 - 6936 1.8 11 5 Tu 1 . + CDS 6970 - 7224 80 ## + Term 7251 - 7299 1.1 - Term 7020 - 7056 -0.4 12 6 Tu 1 . - CDS 7157 - 7357 86 ## - Prom 7425 - 7484 1.8 13 7 Tu 1 . - CDS 7505 - 8392 1329 ## COG2820 Uridine phosphorylase - Prom 8550 - 8609 2.6 + Prom 8322 - 8381 5.6 14 8 Tu 1 . + CDS 8564 - 9130 749 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 15 9 Op 1 . + CDS 9267 - 11084 1640 ## COG1640 4-alpha-glucanotransferase 16 9 Op 2 . + CDS 11141 - 13132 1974 ## PGN_1834 hypothetical protein + Term 13174 - 13235 16.3 17 10 Op 1 . + CDS 14046 - 15473 1768 ## PG0495 hypothetical protein 18 10 Op 2 . + CDS 15486 - 16997 872 ## COG5492 Bacterial surface proteins containing Ig-like domains + Term 17022 - 17053 0.1 + Prom 17081 - 17140 3.1 19 11 Op 1 . + CDS 17299 - 18402 1518 ## COG0012 Predicted GTPase, probable translation factor 20 11 Op 2 . + CDS 18445 - 19965 1675 ## COG0519 GMP synthase, PP-ATPase domain/subunit 21 11 Op 3 . + CDS 20004 - 20825 1066 ## COG0413 Ketopantoate hydroxymethyltransferase + Term 20851 - 20903 15.4 + Prom 20858 - 20917 2.6 22 12 Tu 1 . + CDS 20981 - 21868 778 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 23 13 Op 1 . + CDS 21999 - 23339 1316 ## COG0826 Collagenase and related proteases 24 13 Op 2 . + CDS 23384 - 23833 435 ## PGN_0566 probable thioesterase protein 25 13 Op 3 . + CDS 23833 - 25239 1106 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 26 14 Tu 1 . - CDS 25259 - 26305 805 ## PGN_1498 hypothetical protein 27 15 Tu 1 . - CDS 26502 - 28358 2490 ## COG1158 Transcription termination factor - Prom 28411 - 28470 6.1 - Term 29050 - 29112 17.5 28 16 Tu 1 . - CDS 29171 - 31801 2723 ## COG3291 FOG: PKD repeat - Prom 31866 - 31925 2.1 + TRNA 32240 - 32316 58.0 # Arg ACG 0 0 29 17 Op 1 . - CDS 32372 - 33430 1015 ## COG0793 Periplasmic protease 30 17 Op 2 . - CDS 33427 - 34314 1045 ## PGN_0471 hypothetical protein 31 17 Op 3 . - CDS 34332 - 36950 3577 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit - Term 37029 - 37080 13.5 32 18 Op 1 . - CDS 37200 - 38354 1113 ## gi|228470966|ref|ZP_04055811.1| hypothetical protein PORUE0001_0340 - Prom 38456 - 38515 4.5 33 18 Op 2 . - CDS 38550 - 40064 1962 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 40087 - 40146 1.8 + Prom 40046 - 40105 6.2 34 19 Tu 1 . + CDS 40194 - 40439 109 ## 35 20 Tu 1 . + CDS 40553 - 40759 101 ## gi|228470932|ref|ZP_04055777.1| hypothetical protein PORUE0001_0342 + Term 40971 - 41010 -0.9 - Term 40771 - 40814 11.4 36 21 Op 1 . - CDS 40857 - 43013 2440 ## PGN_1510 putative peptidyl-prolyl cis-trans isomerase 37 21 Op 2 . - CDS 43134 - 44399 1389 ## COG1253 Hemolysins and related proteins containing CBS domains 38 21 Op 3 . - CDS 44468 - 45076 626 ## BDI_0182 hypothetical protein - Prom 45105 - 45164 4.6 - Term 45165 - 45199 1.4 39 22 Op 1 . - CDS 45209 - 46579 1531 ## PGN_1513 hypothetical protein 40 22 Op 2 . - CDS 46616 - 47923 1195 ## PGN_1514 hypothetical protein 41 22 Op 3 . - CDS 47980 - 48762 524 ## COG1521 Putative transcriptional regulator, homolog of Bvg accessory factor + Prom 48881 - 48940 5.2 42 23 Op 1 . + CDS 49075 - 50241 1378 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 43 23 Op 2 . + CDS 50293 - 51459 1492 ## PG0694 immunoreactive 42 kDa antigen PG33 + Term 51552 - 51595 11.5 44 24 Tu 1 . + CDS 52245 - 52643 629 ## PG0319 hypothetical protein + Term 52709 - 52751 -0.3 45 25 Tu 1 . + CDS 52771 - 53868 1010 ## PGN_1642 hypothetical protein 46 26 Op 1 . + CDS 53979 - 55082 1532 ## COG1703 Putative periplasmic protein kinase ArgK and related GTPases of G3E family 47 26 Op 2 . + CDS 55131 - 55463 475 ## gi|228470947|ref|ZP_04055792.1| hypothetical protein PORUE0001_0354 48 26 Op 3 . + CDS 55483 - 56277 741 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 49 26 Op 4 . + CDS 56307 - 57422 1388 ## COG0489 ATPases involved in chromosome partitioning + Term 57440 - 57485 -0.5 + Prom 57487 - 57546 1.9 50 27 Op 1 . + CDS 57602 - 58969 881 ## PG0188 putative lipoprotein 51 27 Op 2 . + CDS 58988 - 59722 747 ## PGN_0297 hypothetical protein 52 27 Op 3 1/0.000 + CDS 59722 - 60435 782 ## COG0020 Undecaprenyl pyrophosphate synthase 53 27 Op 4 . + CDS 60484 - 63204 3311 ## COG4775 Outer membrane protein/protective antigen OMA87 54 27 Op 5 . + CDS 63302 - 63820 774 ## PGN_0300 hypothetical protein 55 27 Op 6 . + CDS 63861 - 64361 775 ## PGN_0301 hypothetical protein + Term 64427 - 64474 15.1 - Term 64714 - 64763 10.0 56 28 Op 1 . - CDS 64860 - 65801 877 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 57 28 Op 2 . - CDS 65805 - 66899 1281 ## COG0337 3-dehydroquinate synthetase 58 28 Op 3 . - CDS 66911 - 69526 3516 ## COG0013 Alanyl-tRNA synthetase 59 28 Op 4 . - CDS 69620 - 69847 226 ## gi|228470994|ref|ZP_04055839.1| hypothetical protein PORUE0001_0367 60 28 Op 5 . - CDS 69888 - 70850 860 ## gi|228470946|ref|ZP_04055791.1| hypothetical protein PORUE0001_0368 61 28 Op 6 . - CDS 70857 - 71537 802 ## PGN_0515 probable lipoprotein signal peptidase 62 28 Op 7 . - CDS 71556 - 71936 690 ## PGN_0516 putative DnaK suppressor protein 63 28 Op 8 . - CDS 72022 - 75435 4123 ## COG0060 Isoleucyl-tRNA synthetase - Prom 75666 - 75725 3.1 + Prom 75407 - 75466 2.8 64 29 Tu 1 . + CDS 75571 - 75771 72 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Prom 75782 - 75841 3.8 65 30 Tu 1 . + CDS 75876 - 77060 1021 ## COG1035 Coenzyme F420-reducing hydrogenase, beta subunit - Term 76891 - 76937 -0.7 66 31 Tu 1 . - CDS 77142 - 77462 155 ## Coch_1865 protein of unknown function DUF805 67 32 Op 1 . - CDS 77517 - 78227 347 ## gi|228470961|ref|ZP_04055806.1| hypothetical protein PORUE0001_0373 68 32 Op 2 . - CDS 78266 - 78856 225 ## PRU_2004 hypothetical protein 69 32 Op 3 . - CDS 78853 - 79902 397 ## gi|228470968|ref|ZP_04055813.1| hypothetical protein PORUE0001_0375 70 32 Op 4 . - CDS 79904 - 80902 619 ## gi|228470900|ref|ZP_04055745.1| hypothetical protein PORUE0001_0376 71 32 Op 5 . - CDS 80940 - 82001 837 ## gi|228470986|ref|ZP_04055831.1| hypothetical protein PORUE0001_0377 + Prom 82252 - 82311 3.5 72 33 Op 1 . + CDS 82500 - 84188 1931 ## COG0659 Sulfate permease and related transporters (MFS superfamily) 73 33 Op 2 . + CDS 84232 - 84849 680 ## ZPR_4443 hypothetical protein + Term 84880 - 84921 4.2 - Term 84862 - 84916 12.1 74 34 Op 1 . - CDS 84957 - 85982 1167 ## COG0820 Predicted Fe-S-cluster redox enzyme 75 34 Op 2 . - CDS 85997 - 88174 1133 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 76 34 Op 3 . - CDS 88211 - 89155 885 ## COG1162 Predicted GTPases - Term 89205 - 89258 5.0 77 35 Op 1 33/0.000 - CDS 89317 - 89877 894 ## COG0233 Ribosome recycling factor 78 35 Op 2 . - CDS 89909 - 90634 939 ## COG0528 Uridylate kinase - Prom 90717 - 90776 1.7 - Term 90838 - 90885 14.8 79 36 Op 1 . - CDS 90987 - 92918 1738 ## Ccel_2338 hypothetical protein 80 36 Op 2 . - CDS 93009 - 94070 978 ## gi|228471000|ref|ZP_04055845.1| hypothetical protein PORUE0001_0386 81 36 Op 3 . - CDS 94081 - 95346 804 ## BT_1451 hypothetical protein - Prom 95516 - 95575 2.8 82 37 Tu 1 . - CDS 95793 - 95999 135 ## - Prom 96082 - 96141 1.8 - Term 96112 - 96160 16.2 83 38 Op 1 . - CDS 96178 - 97431 1625 ## BF0627 hypothetical protein 84 38 Op 2 . - CDS 97481 - 97897 565 ## BF0628 putative TonB-linked outer membrane receptor 85 38 Op 3 . - CDS 97830 - 98291 373 ## Ctha_0985 TonB-dependent receptor plug 86 38 Op 4 . - CDS 98306 - 98599 433 ## Ctha_0985 TonB-dependent receptor plug 87 38 Op 5 . - CDS 98451 - 99818 1462 ## COG4206 Outer membrane cobalamin receptor protein 88 38 Op 6 . - CDS 99911 - 100531 653 ## PGN_0945 putative TetR family transcriptional regulator 89 38 Op 7 . - CDS 100543 - 101208 765 ## COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis - Prom 101249 - 101308 2.3 90 39 Op 1 . - CDS 101333 - 101635 304 ## VFMJ11_A1052 hypothetical protein 91 39 Op 2 . - CDS 101637 - 103049 1385 ## COG0486 Predicted GTPase 92 39 Op 3 . - CDS 103046 - 103513 243 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 93 39 Op 4 . - CDS 103548 - 104621 1298 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 94 39 Op 5 . - CDS 104663 - 105427 775 ## COG0130 Pseudouridine synthase 95 39 Op 6 . - CDS 105432 - 106283 1164 ## COG1968 Uncharacterized bacitracin resistance protein 96 39 Op 7 . - CDS 106308 - 106568 466 ## PG1537 hypothetical protein 97 39 Op 8 . - CDS 106600 - 107370 931 ## COG2177 Cell division protein 98 40 Tu 1 . - CDS 108336 - 109505 1397 ## COG0642 Signal transduction histidine kinase - Prom 109742 - 109801 3.4 99 41 Op 1 . + CDS 109613 - 110230 693 ## PRU_0296 TetR family transcriptional regulator 100 41 Op 2 . + CDS 110236 - 110985 229 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 101 41 Op 3 . + CDS 111005 - 111691 597 ## COG0564 Pseudouridylate synthases, 23S RNA-specific + Term 111710 - 111760 17.0 102 42 Tu 1 . + CDS 111763 - 112245 292 ## BF3004 tyrosine type site-specific recombinase + Term 112324 - 112362 3.5 - Term 112237 - 112288 15.5 103 43 Op 1 . - CDS 112337 - 113044 141 ## Coch_1711 hypothetical protein 104 43 Op 2 . - CDS 113092 - 113484 98 ## BT_3651 hypothetical protein - Prom 113656 - 113715 2.6 105 44 Op 1 . - CDS 114139 - 114708 82 ## COG1704 Uncharacterized conserved protein 106 44 Op 2 . - CDS 114724 - 115455 661 ## COG2849 Uncharacterized protein conserved in bacteria - Prom 115610 - 115669 2.9 107 45 Tu 1 . + CDS 115467 - 115763 131 ## + Term 115912 - 115957 0.6 - Term 115580 - 115618 6.2 108 46 Tu 1 . - CDS 115707 - 116009 279 ## BF0655 hypothetical protein - Prom 116222 - 116281 3.1 109 47 Tu 1 . - CDS 116386 - 116595 87 ## 110 48 Op 1 . - CDS 116716 - 117141 598 ## BDI_0258 hypothetical protein 111 48 Op 2 . - CDS 117148 - 117786 782 ## EUBREC_1239 cytidylate kinase 112 48 Op 3 . - CDS 117833 - 118312 456 ## COG0295 Cytidine deaminase - Term 118332 - 118384 16.0 113 49 Op 1 . - CDS 118408 - 119250 879 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 114 49 Op 2 . - CDS 119318 - 120772 1788 ## COG2195 Di- and tripeptidases 115 50 Op 1 . - CDS 120953 - 121909 1145 ## PG1734 transporter, putative 116 50 Op 2 . - CDS 121906 - 122862 680 ## COG1600 Uncharacterized Fe-S protein 117 50 Op 3 . - CDS 122859 - 123998 1005 ## COG0535 Predicted Fe-S oxidoreductases - Prom 124247 - 124306 2.8 118 51 Tu 1 . + CDS 123765 - 124292 155 ## 119 52 Op 1 . - CDS 124323 - 124772 652 ## gi|228470930|ref|ZP_04055775.1| conserved hypothetical protein 120 52 Op 2 . - CDS 124843 - 125301 607 ## PRU_2381 putative lipoprotein 121 52 Op 3 . - CDS 125313 - 125555 192 ## - Prom 125612 - 125671 3.5 + Prom 125651 - 125710 2.8 122 53 Op 1 . + CDS 125836 - 127311 1267 ## BF2542 hypothetical protein 123 53 Op 2 . + CDS 127347 - 128750 1679 ## COG1010 Precorrin-3B methylase 124 53 Op 3 5/0.000 + CDS 128747 - 129940 1067 ## COG2242 Precorrin-6B methylase 2 125 53 Op 4 9/0.000 + CDS 129942 - 131777 1551 ## COG2875 Precorrin-4 methylase 126 53 Op 5 . + CDS 131774 - 132484 633 ## COG2243 Precorrin-2 methylase + Term 132549 - 132589 -0.9 + Prom 132581 - 132640 5.8 127 54 Op 1 . + CDS 132690 - 134834 2138 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 128 54 Op 2 . + CDS 134926 - 135954 1293 ## COG4822 Cobalamin biosynthesis protein CbiK, Co2+ chelatase + Term 136018 - 136068 14.4 129 55 Tu 1 . + CDS 136135 - 136830 547 ## gi|228470914|ref|ZP_04055759.1| hypothetical protein PORUE0001_0430 + Term 136939 - 136982 1.3 - Term 137085 - 137134 5.2 130 56 Op 1 3/0.000 - CDS 137156 - 137728 515 ## COG3385 FOG: Transposase and inactivated derivatives - Prom 137886 - 137945 4.2 131 56 Op 2 . - CDS 137969 - 138346 312 ## COG3385 FOG: Transposase and inactivated derivatives - Prom 138533 - 138592 3.8 + Prom 138442 - 138501 5.8 132 57 Tu 1 . + CDS 138639 - 138851 480 ## BDI_1894 hypothetical protein + Term 139094 - 139150 6.2 + TRNA 139004 - 139088 63.6 # Leu TAG 0 0 - Term 139084 - 139135 12.1 133 58 Op 1 . - CDS 139220 - 140131 1029 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 134 58 Op 2 41/0.000 - CDS 140153 - 141541 1734 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 135 58 Op 3 41/0.000 - CDS 141538 - 142314 174 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 136 58 Op 4 . - CDS 142360 - 143868 1569 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 137 58 Op 5 . - CDS 143861 - 144439 413 ## gi|228470870|ref|ZP_04055715.1| hypothetical protein PORUE0001_0439 138 58 Op 6 . - CDS 144452 - 145438 939 ## COG0142 Geranylgeranyl pyrophosphate synthase 139 58 Op 7 . - CDS 145450 - 147393 2323 ## COG0171 NAD synthase + Prom 147446 - 147505 3.0 140 59 Tu 1 . + CDS 147584 - 147772 200 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 - Term 147729 - 147779 1.2 141 60 Op 1 . - CDS 147807 - 148367 617 ## COG0566 rRNA methylases 142 60 Op 2 . - CDS 148386 - 148727 529 ## COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins 143 60 Op 3 . - CDS 148738 - 150405 612 ## PROTEIN SUPPORTED gi|39938628|ref|NP_950394.1| ribosomal protein L13 - Prom 150437 - 150496 3.9 + Prom 150401 - 150460 2.9 144 61 Tu 1 . + CDS 150629 - 152446 2099 ## COG1283 Na+/phosphate symporter + Term 152511 - 152563 16.4 Predicted protein(s) >gi|228307264|gb|ACLR01000182.1| GENE 1 50 - 1375 1384 441 aa, chain - ## HITS:1 COG:PAB0626 KEGG:ns NR:ns ## COG: PAB0626 COG2217 # Protein_GI_number: 14521140 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Pyrococcus abyssi # 1 432 260 689 689 450 53.0 1e-126 MSGCVNLSGLLSVRVAKTAGDSTASKIIEMVEHATDHKSRSETFIRRFARVYTPVVVIVA LLLAFLPPLLMGSFADHFATWLYRALTFLVISCPCALVISIPLSFFAGIGGASRAGILVK GANYMDALAKARAVLFDKTGTLTKGTFTANAIHPTACEANHLLHMVAHVERHSTHPIATS LRNAYPNEQDDCTIEEVEELAGRGVKARVNGSVVHVGNVALMESIGAQWHPCDHAGTIVH AAIDGTYAGHIVVSDTIKEESSQAIEALSRLGIRQLVMLTGDHEEVAQQISKQVGITEYY ADLLPADKLSRLEAILQQPARGTVLFVGDGINDAPVLARADVGIAMGGLGSDAAIEAADV VIMDDNPLKIATAIRIARHTVGIALQNAWFAIGIKVLVLLLALLGVASMWMAVFADVGVT VLAVLNAMRALRPVKVSRSSN >gi|228307264|gb|ACLR01000182.1| GENE 2 1551 - 1943 544 130 aa, chain - ## HITS:1 COG:FN0258 KEGG:ns NR:ns ## COG: FN0258 COG2217 # Protein_GI_number: 19703603 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Fusobacterium nucleatum # 11 128 12 118 614 99 44.0 1e-21 MNKKLIRIILTALLLIGAYIVERTSALPMWQLLLVYLVPYLIIGYDVLGEAVEGVAHGEL FDEHFLMSIATVGALCIGFLPGAEAQFPEAVFVMLFFQLGELFEGYAEGKSRRAVSHLLE IRPDTAHVAA >gi|228307264|gb|ACLR01000182.1| GENE 3 2309 - 2521 100 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPRQSRSAPTQSSTSTSRPRDTRRASVTLETLSLAQRNWLESEMQYIETFVAVRLAQLAV NVATGQPLDL >gi|228307264|gb|ACLR01000182.1| GENE 4 2419 - 3102 692 227 aa, chain - ## HITS:1 COG:no KEGG:BDI_0140 NR:ns ## KEGG: BDI_0140 # Name: not_defined # Def: putative alkaline protease AprF # Organism: P.distasonis # Pathway: not_defined # 4 190 203 387 461 104 31.0 3e-21 MKDQGVVADREVVSVRVNRNNAKLQEGKLREGLQALLILLKHQCRIPAEQAIELTPDFTL ASHQPIDPCQPKLYSTVNPMERVELKAANLAVEAEKRRAQMALGEMLPEVGFTAQLLTMS PNPMDGFKKQFGTTWMVGVAVQIPITGIYQGVQSRTAALANQQVRQLELQDAERAIQMQN EQASRQLTEALTTLCRDRADPHRRKAQPRPLDRGTQGGRRSHSRRSR >gi|228307264|gb|ACLR01000182.1| GENE 5 3099 - 3731 552 210 aa, chain - ## HITS:1 COG:no KEGG:PRU_0267 NR:ns ## KEGG: PRU_0267 # Name: not_defined # Def: outer membrane efflux protein # Organism: P.ruminicola # Pathway: not_defined # 58 201 45 188 461 65 29.0 9e-10 MMRDLLASLRGALILALCGILTSSLCAQTEPLKLSLHDCIRYHQESPAPSAQLEAQRQVA HATRLKAQSNFFPQVSLSGGWLYTPAKLKPFSIDLSSWLPPMQLPKLPGVPTLSEAQSWL DDKMSLELGHIFYGSLSLRQPIFAGGRIYNGMRLAQIGEQAAEYQWTIQQRGEEEQIAKT YWQAVQLQEQLQAIGQFNAMLAKRSPTSPP >gi|228307264|gb|ACLR01000182.1| GENE 6 3728 - 4648 1181 306 aa, chain - ## HITS:1 COG:no KEGG:PGN_0874 NR:ns ## KEGG: PGN_0874 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 10 306 7 306 308 255 46.0 1e-66 MARLDNKHIKYIIAGAALVVLLVIVGAWIYIRSERQQMQSVQSELVDMEKQRMQQELDEL AAQYQLQYDKLASASGETSISFDNDELLAQLESEQERVKQLSQELATVKSSNAKRISELT GEINTLRALLRSYIVQIDSLHATNERLVAENQQVKEDYSRVSSEASRLTEEKAALSNQVA IAARLDLSGLSVSPLNNRGKRTSRIDKVETLAVSFTLKKNVTAPVGNKAIYVRILNPNDM PMSGSGGAFSFEGQTLQATASKSIEYTGEDTPVTIYCQITQALLSGSYRADVFADGHRIG HTTFTL >gi|228307264|gb|ACLR01000182.1| GENE 7 4654 - 5334 563 226 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470982|ref|ZP_04055827.1| ## NR: gi|228470982|ref|ZP_04055827.1| hypothetical protein PORUE0001_0313 [Porphyromonas uenonis 60-3] # 12 226 1 215 215 372 99.0 1e-102 MHLISRYLLILLLAVGSYPLVAQERAELEQCYQTIIERPLGVAPAISDSAWGQLIQKALD RPDSTVTLQTKSQASLEMRIDKARLRCTISVSGLLTYELLRAPWRIQGEQPLLQITTIEK PYRVSQLTAFLPKRDQQWELNPTIPYTDWLLHAKEPVPTSSESLLTQMPIVLAFATEQGR REVRILATPSLEGWTTKEEAKRIQELISISPQPYQLTRRGILKRIK >gi|228307264|gb|ACLR01000182.1| GENE 8 5473 - 5928 427 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470938|ref|ZP_04055783.1| ## NR: gi|228470938|ref|ZP_04055783.1| hypothetical protein PORUE0001_0314 [Porphyromonas uenonis 60-3] # 1 151 1 151 151 263 100.0 2e-69 MKKRVSYQDFQRRQKLAEADLQIAERVWQRDIEYIKEQGVKKTIIDEVKDQIVPPKSFLG RIITPSKRRSRGKSSLLDRLLGGFTRSTDRSLTRGDYASEVQGAVPEPTGRTQQLISTGL AIAKPILWTVGLGIAKGYLRRKFKPLRLFIR >gi|228307264|gb|ACLR01000182.1| GENE 9 5944 - 6393 446 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470964|ref|ZP_04055809.1| ## NR: gi|228470964|ref|ZP_04055809.1| hypothetical protein PORUE0001_0315 [Porphyromonas uenonis 60-3] # 1 149 1 149 149 245 100.0 7e-64 MQDFKTSRFIYHTKEYLKASARQAIYSSTDTGMKVVGNLVALLLVLALIPFVMLLLLLAG VAGINVWLELGWGWSLLIGAGVLLLLVLITLLLRKVIVRSVSTCIYRRLHSSLAKIDDKL RPQPMPEDYATESEEPLYPTNDEPTTPTR >gi|228307264|gb|ACLR01000182.1| GENE 10 6604 - 6927 693 107 aa, chain - ## HITS:1 COG:no KEGG:PGN_1995 NR:ns ## KEGG: PGN_1995 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 85 1 85 91 61 43.0 9e-09 MNNTGRIALGIAIGAAIGAAITYLSDRDKRDQLYDDLSTTADRTRDTLVEGYYEAKDRFE TYRDKLRKRSKDFAEEVEEQFDETIGKAKETASKAKETLDEAKKAVK >gi|228307264|gb|ACLR01000182.1| GENE 11 6970 - 7224 80 84 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRLQITSADLCLGDSPYAYKVVEYHLDTLKVRKNSHTTSKKRTLPSGERLIWDEFIYGTI KEIKQFLGGDLRLSSEKRKKSSEL >gi|228307264|gb|ACLR01000182.1| GENE 12 7157 - 7357 86 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTTTSPPIAISPEEFEELHGANENSSRNREIKVRKNEMKLRKKEIKVPKIFSVSHWIIED LHQGIV >gi|228307264|gb|ACLR01000182.1| GENE 13 7505 - 8392 1329 295 aa, chain - ## HITS:1 COG:VNG0893G KEGG:ns NR:ns ## COG: VNG0893G COG2820 # Protein_GI_number: 15790029 # Func_class: F Nucleotide transport and metabolism # Function: Uridine phosphorylase # Organism: Halobacterium sp. NRC-1 # 17 272 9 228 273 100 31.0 2e-21 MSTQNRIIPPSELIVNDDGSIFHLHLKPEQLADKIVLCGDPSRVDMIASHFDSQECSVSN REFHTITGTYRGKRITVQSHGIGCDNIEIVINELDALANIDLQTRQVRPNHRKLTMVRVG TSGGLQPETPIGTYVAAHKAIGFEGSLFFYANTEAIRDLPFEAALKEQLQWPIKGLDPYV VNCSEALYQQIVGDYGDIVRGCTIAANGFYAPQGRQLRLPLADPTLNQKIEAFEYEGQRI TNFEMESAALSGIGNLLGHDTLTVCYIIAGRQNLNMNTNYKQGIDGLIELVLERI >gi|228307264|gb|ACLR01000182.1| GENE 14 8564 - 9130 749 188 aa, chain + ## HITS:1 COG:ML0522 KEGG:ns NR:ns ## COG: ML0522 COG0231 # Protein_GI_number: 15827184 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Mycobacterium leprae # 1 186 1 185 187 197 53.0 7e-51 MATTADFRNGMCLDIDGQYFFIVEFLHVKPGKGPAFVRTKLRNVATGRIIDKTWNSGVKV EEVRIERRPYQYLYNDEMGYHFMHPETFDQIAINGDLIDGVRFLKEGDMVEAMVHAESET VLTCELPAHVDLRITHTEPGIKGDTATNSLKPATVETGAEIRVPLFINQDDLVTVDTRDG SYVGRVKE >gi|228307264|gb|ACLR01000182.1| GENE 15 9267 - 11084 1640 605 aa, chain + ## HITS:1 COG:L94405 KEGG:ns NR:ns ## COG: L94405 COG1640 # Protein_GI_number: 15672678 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Lactococcus lactis # 181 604 12 487 489 223 32.0 6e-58 MSQIPRQTGIAVPLFSLRRQGDAGCGDFAALEAFAPVAERMGVRIIQLLPLEDTTLYGDS RDSYPYGPLASTALNPIYIAVDQLPPLADQQLEQELRAEAQSLSAQKTFDYTAVWQLKRR WLWASFTEQADASPYFTDMINRYARLTRKHAPFKSTPIWHYWVCERMILDLLPDLNREEW DFWEAMERVNKLEQENKALVVRTGNFYAYCYMVAQRQMRRAVATIRQHGLSLMGDLPVGV DPHAADTLAYPGKFNKRLFCGAPPDYFSPDGQNWGILTCRRNWKMLWQERFGYLERFYDY LRVDHVLGFFRMWSIPRDGRSGMLGYFLPSRRYLKREIAKLGLAETLRPEWIAPSKKPVT TQEVFWIERLDAGYVPRYDVASAAPFAMLSPDLQERMRAVCEDYYYGGNEKLWRERGLER LTFLKDLTSIHLCAEDLGMVPQCVYPVLEELGILKLYVERMPKSAGIEFEAAPYFSEDSV ATTSTHDCAPLRLWWAEDEARSRRYYDYFLADYGVPYDTTLTPELAEIIVRRHLESPSRL CILPLQDWLALSPEHCATVDPQSEQINDPSNPHHVWSYRMPIAVEELPDDWIRQLRQMIA ETHRL >gi|228307264|gb|ACLR01000182.1| GENE 16 11141 - 13132 1974 663 aa, chain + ## HITS:1 COG:no KEGG:PGN_1834 NR:ns ## KEGG: PGN_1834 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 659 9 663 663 763 56.0 0 MRKLNSKEIKQLTDQGCQAQDWSLIRVHRYFDASRCQQVHFIGSCEIGDNRGGRPSEEEP SYVEPYRLAHVKLINCTIGDRVIIDGVRDCISHYDIADDVIIHDIAALKVMGETTFGNGY LVEVLNETGGREVPICDILTAQTAYMLAMYRHDKELQAALSKLVEEYTDSVRSDRGTIGE SSNIKHCGLMTNVKVGPHSSIIGASVLENGSVNSTALSPTKVGYGVICRDFIFSAGCVVS DGSNVSRSFIGQGCSVTHLFSAHDSLFFANCQCENGEACAVFAGPFTVTMHKSSLLIAGY YSFLNAGSGSNQSNHLYKLGPIHQGIVERGSKTTSDSYVLWPSRIGAFSLIMGRHVAHID SSDFPFSYIIENDNQSYLVPGTNLRSVGTIRDTKKWPKRDKRHPEEKLDCINYNLLSPYT VGKMYKGWHKLKALETHLGSADATYIYHDMHIRHSSLVKGCRYYEMGIIKFLGNSLIQRI QDQAPKSKSELVACLPPTSNEGLSDWLDLAGMIAPRRLVRNLIKQIKEGQIKTLEEVNVA IRAIHSRYYEIEWHWAYDLLLRWYDIAAKDLTVERVIQIIKEWQETVITLDEYLLQDAHK EFEMLTQVGFGIDLDGDHNRRIDFEQVRGNYEDNAFVIEVHDHISRKKLLGETILAQIDA LPE >gi|228307264|gb|ACLR01000182.1| GENE 17 14046 - 15473 1768 475 aa, chain + ## HITS:1 COG:no KEGG:PG0495 NR:ns ## KEGG: PG0495 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 298 464 298 460 469 78 29.0 6e-13 MKQRLLRNNWILLGFLLITMLASLSYAHASVRGAGTQATTGCLVTFSETNEWGTIKAYYF DVENGRGKVFFKSGARLPKGTAVNFVATVSKGWEAGSWTVNGKVTKGRNPTWLNIRYLEK DSKIALTCKRLKQYKISYASDPADGGTIKVYWKKQVGFYGDEVEEVSIPDGGTVLEKTKV YIEARPKAGYRFDRYVINEKSQTGDSSDKNTYVLTPTGDLTIRGIFISTRPVTYAIHFAQ PAHGHLKLFVGEQEIQPNATLERGTDVKVEATPDEGYELKSLKVNKQDILSAKKFTVEGE STVVATFEQKKPVTYAIHFAQPEHGHLKLFSGEQEIQPNATLERGTEVKVEATPDEGYEL KSLKVNEQDILSAKKFTVAGESTVVATFEQKTGVEEPDESLLLKVYPNPTDSYCIVSVPA TYIGETAYLLGAGGELLRLLPLVQSEVTLDLAYLPIGTYLLKVGATDHSLTIIRK >gi|228307264|gb|ACLR01000182.1| GENE 18 15486 - 16997 872 503 aa, chain + ## HITS:1 COG:CAC2107 KEGG:ns NR:ns ## COG: CAC2107 COG5492 # Protein_GI_number: 15895377 # Func_class: N Cell motility # Function: Bacterial surface proteins containing Ig-like domains # Organism: Clostridium acetobutylicum # 41 177 203 342 439 67 36.0 6e-11 MTIANLHRQPLLRGVTTVCLTLLAVALLCSCSDEMPKPLQMTLSSRTFLLTVGDTARLNV AITPQATSPQVTFKSLDETIARVDPTGLITACASGETAIAVALGSLRDTCRVQVSAQAVA ISLPETDISVVEGDTTRIRYTVSPEGTPVTFTSAAPQVATVDDRGCVRGVSVGETTIMLQ ALSTQVSVRVSVTAPNIKVSTELPLMKFAPQRDATGHITEPSILSYEQSLGRRSQSIRYN MQQTYEGFVNLDLTTIPAVIYGIPTEDGHDKRIIAYSKETIAHCPRTRTMLRSSGFSQIE SAVIDVAGEKTSVLRAKSDIDPDITVVMMDEEYPEFGAQMYMEFVKRMPRHHSIMTNVQD FPSLKALATGSLDKAQAFEQQLGLREFSKQDSKHYSRMFVTKSEALEKSNIKWVYYTLRE DPSHPFINAELNCPNGKADIKSTALKEYLARNGFDQEYYVDATANVVMVYNHDGDLCQIY EDSKTKRILLQLVLKRDLPNYEG >gi|228307264|gb|ACLR01000182.1| GENE 19 17299 - 18402 1518 367 aa, chain + ## HITS:1 COG:PA4673 KEGG:ns NR:ns ## COG: PA4673 COG0012 # Protein_GI_number: 15599868 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Pseudomonas aeruginosa # 1 367 1 366 366 416 57.0 1e-116 MSLQCGIVGLPNVGKSTLFNCLSNAKAQSANFPFCTIEPNVGVITVPDERLNKLVEMEHP KRTVPATVEIVDIAGLVKGASQGEGLGNKFLSNIRETDAIIHLLRCFDDDNITHVDGSVD PVRDKEIIDTELQLKDLETVQTQLKKSERQAQTGGDKQAKIRVALLKRIEEALLQGLNAR SVTPENKDEEQALRDLFLLTAKPVLYVCNVDEASAATGNAYVEAVRKAIAHEDAELLVVS AHIESEIAELEEYEERQLFLQELGLEETGVNRLIRAAYKLLNLETFFTAGADECRAWTFV KGSKAPQCAGIIHTDFERGFIRAEVIKYEDYVHYGSETAVKEAGRMAVEGKDYVVQDGDI MHFRFNV >gi|228307264|gb|ACLR01000182.1| GENE 20 18445 - 19965 1675 506 aa, chain + ## HITS:1 COG:aq_236_2 KEGG:ns NR:ns ## COG: aq_236_2 COG0519 # Protein_GI_number: 15605784 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Aquifex aeolicus # 193 506 2 316 316 407 62.0 1e-113 MPDKIIIADFGSQTTQLIGRRLRDLNTYCEIVPYNKIPTDLTGVRGVILSGSPYSVYAEE AFTADIAAIRGRLPILGICYGAQLMVHQSGGAVENSNTREYGASTLQLVDKDDPLLAGLS PQHTVWMSHGDTITRLPEGFKVIASTPSVQYAAYRIEGEETWGVQFHPEIHHSEEGTKLL DNFVTLCGIKGEWSSESFIESSIASIQAQVGDEQVIMALSGGVDSSVAAVLLHRAIGDQL TCIFVDHGLMRLGEAEQILADYKALGLGCIKVDASAKFLDDLAGVRDPEAKRKVIGRDFI EVFEAEAKKLPQARWLGQGTIYPDIIESINITGKVIKSHHNVGGLPERMHLKLVEPLKHL FKDEVRRVGLALAMPRHMIFRHPFPGPGLGIRVLGEVTPQKVAILQQADKIYTDLLRKYN LYDEVWQAGAILLPVQSVGVMGDERTYEYTVALRAVTSVDAMSADWARLPYDFLAEVSNE IINKVRGVNRVCYDVSSKPPATIEWE >gi|228307264|gb|ACLR01000182.1| GENE 21 20004 - 20825 1066 273 aa, chain + ## HITS:1 COG:Cgl0115 KEGG:ns NR:ns ## COG: Cgl0115 COG0413 # Protein_GI_number: 19551365 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Corynebacterium glutamicum # 8 273 5 269 269 259 52.0 3e-69 MSTYQATDSRKVTTRRLLEMKERGEKISMLTAYDYSAAQIIDAAGMDVILVGDSASNVMA GNVTTLPITLDQMIYHGKSVMKAVQRALVVVDLPFGSYQGNSKIALESAIKVMKITHADA IKIEGGSEIRESVERILSAGIPIMGHLGLTPQSINKFGSYAVRAKEQAEADKLLADAHLL EELGCFALVLEKIPAPLATKVASELTIPVIGIGAGGGVDGQVLVMHDMLGITQGFSPRFL RRYADLGSIMTDAVQHYIADVKSQDFPNEEESY >gi|228307264|gb|ACLR01000182.1| GENE 22 20981 - 21868 778 295 aa, chain + ## HITS:1 COG:CC2427 KEGG:ns NR:ns ## COG: CC2427 COG0463 # Protein_GI_number: 16126666 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Caulobacter vibrioides # 3 284 18 297 309 74 29.0 2e-13 MPAKPISILIPTRNYDCRPLVETLRRQLLQAHVEGEIILGDDSSDPRYAQLYDSLQQEGL IRLVRPMTHLGAGCMRNYLAQQAEGDQLLIIDSDTMPASDSFVVDYLQAAHPDRVVVGGF RYPTERPTSDRLLRYKYGHKVETRSLAERQQAPADAFVSMSFLIPRHIFLEEGFPAEMGM GYEDAYFGYRLAERGVVITHIDNPVIHALKETSDQFLDTTERYVENLYRHRALLAPYPIR LLQLYLRLERARLVPLLGSLAPLLKHLLRRQLTSGHPSLRFFALYKLLHLCSLRS >gi|228307264|gb|ACLR01000182.1| GENE 23 21999 - 23339 1316 446 aa, chain + ## HITS:1 COG:aq_1015 KEGG:ns NR:ns ## COG: aq_1015 COG0826 # Protein_GI_number: 15606313 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Aquifex aeolicus # 26 437 1 398 409 267 36.0 3e-71 MNERAERIESVDSIIQRELVVLPEELRDPSRYEVMAPVGSYESLSAAIRAGANSIYFGIE ALNMRAKSAYNFTTDDLYRIVETCRRSGVKSYLTVNTIIYDEDLTLLREILYHAHQAQVT AVIAADVATLMEAHRLGLEVHLSTQLNISNWEALRFYAQFADVVVLARELNLDQVAEIRR KIAEERIVGPSGRLVEIEMFAHGALCMAVSGKCYLSLHHQATSANRGSCAQICRRGYRVY DDRQGVELEVTHPNIMSPKDLKTIHFINKMMLAGVSVFKIEGRARGPEYVSTVVQCYREA IDAVCAGTYDEARIAQWNERLREVFNRGFWDGYYLGQRLGEWTPFAGSSAVREKEYVAHI VKYFSKIGVAEVEVESGELALGDRILIIGPTTGVVDMTLSEMRYELEPVSHATKGQRISI PVPRKVRANDKLYLFRERTEVHHFKG >gi|228307264|gb|ACLR01000182.1| GENE 24 23384 - 23833 435 149 aa, chain + ## HITS:1 COG:no KEGG:PGN_0566 NR:ns ## KEGG: PGN_0566 # Name: not_defined # Def: probable thioesterase protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 6 131 5 130 139 170 65.0 2e-41 MKQPIKYQYGLTLKVRDYECDLQGVVNNSNYQCYMEHTRHEFWLALGDSFAEMHDLGLDL FVYKVSITYHRSLRSGDTFHTALRARREGVKLIFDQIIVRSDGVKCASGVVEAVAVQNGR TTRGECFDGIMARAEAYSESHPYDLTILA >gi|228307264|gb|ACLR01000182.1| GENE 25 23833 - 25239 1106 468 aa, chain + ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 3 468 6 482 482 233 30.0 8e-61 MPLLLFVLYLLSVIGGIVIVLGEERSAVSSIPWILVVIFLPVVGLLLYIIFGYSLRRKQL IDVEVRKALSDAATETQSLPSTDVAEDADHTLQSLSSLIESVSDTPLTTAYELTHYDDSR AWLLACREAISRAERYIYIELYRIEDGPWLDVLLDLLAERIQEGVSLYWLYDDVGSRNLS RRYRKRMAQLGGQVAAFLPVRFRLLTSRVNYRNHRNLVVVDGAVGFTGGNILLSELSHLR EGLFPLATTHLRISGPAVRQLEYSFALDWYVVTQQLLSLRQFPAMRTTSTPVQLQIFPTH PTDDFPSLEMIFTHAFLQARRSLYIETPVLIPTSSIQRALISTALSGVQVRVILPRRGRS RLAPKASHAFFTDLLRAGVEIYYYDGLREATYAVVDGESVLTGTPYLDFRSFEYNFDLTT IVYSSEVARQFVDSFEEARSLCHRVSWRRNRLWRRIVYGVMRLLTPLL >gi|228307264|gb|ACLR01000182.1| GENE 26 25259 - 26305 805 348 aa, chain - ## HITS:1 COG:no KEGG:PGN_1498 NR:ns ## KEGG: PGN_1498 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 347 1 350 352 132 31.0 2e-29 MYRIGDILEQALLLHDCVVLPTIGAFIVEQTPPLYDLDLNIITPAGQRISFNASLVERDG ILDSCYARTLGLSVRRARLVVDSDVTVIRHQLYQSGSLTIGSNLGTITLQESGELLFTPV QERQGLRSIHSYGLYPQSCLLSAVASSAHATAEPASEAKGDRKYWTIRINRTATNWVVAG AICLLCLLPISSDSHPDRYSAGFVPYGWLDEASVVTTEQKQALSGSETTATQSNKATEQA EIVSATPEQASEAPTSHALLITHAEALQQGSHAVVVGVFKGPKRAERFIQEVSADPAQTE GISLQIVEESSRCLVIAGIRSSEERAGELRRTVSALSDSFAGAWIYAL >gi|228307264|gb|ACLR01000182.1| GENE 27 26502 - 28358 2490 618 aa, chain - ## HITS:1 COG:AGc5136 KEGG:ns NR:ns ## COG: AGc5136 COG1158 # Protein_GI_number: 15890078 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 247 617 52 420 421 436 59.0 1e-122 MQKYTIVDLNGMTEEQLKEIASQLEITKMASEKKEIIYQILDAQAEAVATQTVEQQQQSK KRKQSDSRSNRTNKEETKESKDEKERPERKSRSNSRQNKRSAKGDTTDQPTEIDRQEAIA IVEEAAAAQSEEGDSKPQESNRSKRNNNKERNNNKENKERNNRNNKRPEPADQSDNEEDK QEHAEETPMVFTHPDADSLLGEVLGESHKEPREKEVDSDDPSHKAKQQNNKSKEEEEEPS YDFSNILTASGLLEVAQDGYGFLRSSDYNYFPSPDDIYVPGDMIKKWHLKTGDVIEGSIR PPKGSEKYFLLQNILLVNGRHPKDNLDRVSFDMLTPLFPEEKFKLESQGIAAVYDKTAMR IVDLVTPIGKGQRGLIVAQPKTGKTMLLKDIANAISANHPEVYMIILLIDERPEEVTDMA RNVNAEVVASTFDEPADHHVKLAELVLAKAKSMVESGHDVLIMLDSITRLARAYNTVQPT SGKILSGGIEANALQKPKRFFGAARNIEHGGSLTILATALTETGSKMDDVIFEEFKGAGN MELQLDRRLSNKRIFPAIDILASSTRRDDLLLDSTTLQRMWILRNHLSDMNTVEAMEFLK QRIELTETNLEFLASMND >gi|228307264|gb|ACLR01000182.1| GENE 28 29171 - 31801 2723 876 aa, chain - ## HITS:1 COG:MA4289 KEGG:ns NR:ns ## COG: MA4289 COG3291 # Protein_GI_number: 20093078 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 307 475 540 706 1734 82 29.0 4e-15 MQQKRLRFSTLLLCLLLPLIGQLQAQTIDLGDFANPSSHFNQSVGQTAPFDFDYLSSVTQ QIYTAAELQGLEGKEITKLAFQIYLSDGESYNTEYTNDLQIYLTNVPDDHFVPVSGKYHW LPINPAQDLYMKKTITLDLMDMTISGNNETSKAGVAYHTLELELDKPFVYTGQSILLSVR SKASKSAVDGPGRSMIEFCSYPKNVKEMPVRTINKATDKAIKEGFVGVLGETADRGQKDR AVMRITFRDASTPQPSYDPIHPVVQLTEAGSLAKLMQGMDLLKCQSITVSGPMNAEDCKT IRDNMGNLTEINIADATFAEEQLPEAAFYNMPLVRKVTLPHTLKVVGERALAQMYKLEEV VLGTQVTKICDSAFAQNRSLSKISPMPALTSIGKYAFKECTALTTFPWPETLTTLDTESF SGSGLTEVRLPNVAVVPHTCFASCKALAKVYLGAKTTEVVFGAFAHCTALTDITIEAVQP PKAINKAFNGLKPANISTINLFVPGDAQEAYKAANVWKDFHIVPIPGTEPQVKKYLLTYR VIGEHGTLKATTATGVAIPSQTEVEEHTAITLTADPERDYIVKSFKFNGTETPMTAGEQN VQTYTFNIEKPTEVTVEFVHRPYIVTYSVRDNVGGTITATYKGKPLDSGATTAVGESETI IFTAHPAEHYHVKKWFVNGQEGPKPAENNQWQVISGKDYVVEVLFERDKVYYTIDVSQEG NGGPIYLEIGGVRSALKSKAPENMDIRVYVEPDKGYRLDYWMVNRERINPVDGSLEYTTK ATKNLRIVAYYAKVEEGNAIDAPTAANANVTIALEGQSITLTNNTDKALGTVALYDYAGR LIEQRTVADKLCTLTAPQAGVYLLSIGTTTAKVCVK >gi|228307264|gb|ACLR01000182.1| GENE 29 32372 - 33430 1015 352 aa, chain - ## HITS:1 COG:aq_797 KEGG:ns NR:ns ## COG: aq_797 COG0793 # Protein_GI_number: 15606169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Aquifex aeolicus # 157 334 193 364 408 65 28.0 2e-10 MNLSRLQSGLVGLLLLPLLLIACTQEPKEQRYTKDYQTNFLALWTILDEGYCFFDDKLPS SGDTTWSDLKAIYTPRVAQCQSEDEFFDLMVELMCHLKDGHVNLFAPFDVGGWNIRKGAR HCLDSRIRNLYLQPHMRRAGSIYYAPITYNGHASDSIGYMVIPSFSSSISLVHLHAVFTR LAHCRGLIIDMRSNGGGLLSNADRLASVLIPSDTVVGYMSTKTGPGHQDFGPLKEIQLAR APISWQRPTVILVDRGTYSAANSLVAYVKGTTRHVLFMGDRTGGGGGLPRSSELPNGWWL RYSSSRMYDAQRQSIEGGIEPHIIQEQTEEATAKQQDALIERAIALLLKGNK >gi|228307264|gb|ACLR01000182.1| GENE 30 33427 - 34314 1045 295 aa, chain - ## HITS:1 COG:no KEGG:PGN_0471 NR:ns ## KEGG: PGN_0471 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 56 291 67 310 315 76 25.0 1e-12 MTQRLRQILLALCVGLSLLGTSASLSAQEADTTVTAPHRLLYLAHDFRFGWNKLYNEYLS PLSYRGQSLGYRLSSEAPLTQSHPEWLVMQSTQVSYAQLLNPARNSATRHIAFDTKWSFV HQWRLPFGLVLGVGPGVLVEAATSYNGRNQNNPVDQQLNGDLTAQALAAYRLHIGWFVAD LRLQMTSALAGLGFAPYYNESYLQAYYYDKIINHIAPHTFGRRHYYQIGLSLDIPIWRIM TLRMSYDYTDSARRIHSIYRGFSGHYLGVGLATYFRPFRGYQEVQSTNHTTAISL >gi|228307264|gb|ACLR01000182.1| GENE 31 34332 - 36950 3577 872 aa, chain - ## HITS:1 COG:BB0035 KEGG:ns NR:ns ## COG: BB0035 COG0188 # Protein_GI_number: 15594381 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Borrelia burgdorferi # 56 636 11 583 626 428 38.0 1e-119 MDLDNRDDIEQEQEIGTTSAETTSATEAVDESYVAPKEEEVEGRLHTLGGMYRHWFLDYA SYVILERAVPHIEDGLKPVQRRVLYTMHLMENGTLHKVAKIVGATMAYHPHGDASINDAL VQLGQKGYLIDTQGNWGNILTGDEAAAGRYIEAKLSNFALEILFGDKITPWMKSYDGKSR EPVYLPARFPLLLAQGAEGIAVGLSCKILPHNPKELIEAACAHLRGEPFTLYPDFPTGGI IDVDRYNDGKRGGQVKSRARIERIEDRVLSVRDLPFGKTTSTLIDSILKANDKGLIKIKR IDDMTAETADIRIYLPVGVSADKTIDGLYAFTDCEVSISPNACVIEDDKPRFLGVSDLLR HSVEHTRGLLEEDLRLQLHDRQEEYMGASLERLFIEHRIYKLPAFEDAPDQQTALDVIRK ALEPIVGDSLLRPITDDDLARLLEIKMARILKFNLEKNEQLILRLTEEMAQIQHHLDHIT DYAIHYYSSLLEEYGAGWERRTQIGHFGSIEATKVVEENLKLYIDRKMGFAGTGIKGGEY VCDCSEIDDMIVFFRDGTYLITKIEEKKFLGKERVLHINKYVRGDKRTIYNAIYLDGKTK TSFIKRFHVSASVRDREYDLTMGTPGSKVLYFSANPNGEAESVTIKLLRGGTSRRILFFN KDFADIAIKGRTAKGNIVTRAPIERISLKEQGGSTLGGRKVWFDPDVNRINYNDQGNYLG EFESSDRILVILPSEQTYTTDFGESNHFAESPKVIEKYDPDKVWSVIYTTPEGVTYIKRV YLPDRKKPQPIIDPEEQLLALTDEPEAQFTLITKPQGRKKETTIEISVTEYEPLKKISAR GKRITALPIESFEQVASVTDETEDEEEELTDE >gi|228307264|gb|ACLR01000182.1| GENE 32 37200 - 38354 1113 384 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470966|ref|ZP_04055811.1| ## NR: gi|228470966|ref|ZP_04055811.1| hypothetical protein PORUE0001_0340 [Porphyromonas uenonis 60-3] # 9 384 1 376 376 669 100.0 0 MRKLTVILMSLLLVVGLGSCKKDNGVKGPNNNGNNGNGTATTEQNELPLLKFDFKTKSSG EVISKDIIDHEAKIGREATKLTVGTDDKGNPVEAPAFVNTDLTIAGVVYMPKLKEQRSVN IYAFANEKLGSCPKTIAMLKEVGFDKIEDKQFEDKTPYKYGVSSKDDKISVLIMEETNEE LGTSISIRFEYKPDLEVKHPFVSTAKDFPDYETFMTKDVDKIKAFEEKLGFREPYKSGDA AKDAAREQRKELWYITKEAQLPNTNFLAVVYISTPTKGKPFIKTILCSIKNEKELADPKV KEWFTANGYGEKFEVSTLNGYAAGFDKTGKTIAFLYIDKENGTVFLEIGAAPEKNSVASQ LRLLNDRKELPLSASDFSAKKQLQ >gi|228307264|gb|ACLR01000182.1| GENE 33 38550 - 40064 1962 504 aa, chain - ## HITS:1 COG:HI1259 KEGG:ns NR:ns ## COG: HI1259 COG0265 # Protein_GI_number: 16273177 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Haemophilus influenzae # 69 473 35 444 466 267 40.0 4e-71 MNKYLKYTLLTLGIALVSGFVSWAVVRTTLRRAASSDSPYAAMLQNYPSSENDYGFLQSD YELTSSRTVGNAPDLTPAAELAVQAVVHIKVEGEQTIDYVDPFEFFFGGGRGFDRPQSRT VTSFGSGVIISTDGYIITNNHVIEGAKSISVSLNDGRSFDAKLIGSDPSVDIALLKVDAK DLPTIPFGDSDKIKLGEWVLAVGNPFNLTGTVTAGIISAKARSTAVEGPQGNAQIGRFIQ TDAAVNRGNSGGALVDAQGRLIGINTMIFSETGNYSGYSFAVPINTAAKIVSDLKKYGSV QRAVLGIIGGTVNEEVKKEKGLKVSQGVYVNEFSEVSAAYAAGIEEGDVIVAIDGNKITE MGELQERIGRCRPGDTIVVTVDRKGTKRDFKVKLKNDEGSTDIVKKDSSSLLGATLREIS GDQLRKQGVSYGLEVTKVGNGKFQSAGIKKGFIILSINNKPVRTVSAARKLVEAAQKTRL GDKAILVKGFYPGDSMKYYAIDLS >gi|228307264|gb|ACLR01000182.1| GENE 34 40194 - 40439 109 81 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGLARRICPWYRTTPYTGVSRKSKDSSVEISESPVRNEKILRNFEIFLPKFHFILPNFY FPVPWRIFVCSLKIPKFLGRN >gi|228307264|gb|ACLR01000182.1| GENE 35 40553 - 40759 101 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470932|ref|ZP_04055777.1| ## NR: gi|228470932|ref|ZP_04055777.1| hypothetical protein PORUE0001_0342 [Porphyromonas uenonis 60-3] # 21 68 1 48 48 85 100.0 1e-15 MHKGESLCRFRDSASVTYGGMLPSDLTLSALRFILSARSGQFSMQDCETVDFCNSRYTLH RACMRCGS >gi|228307264|gb|ACLR01000182.1| GENE 36 40857 - 43013 2440 718 aa, chain - ## HITS:1 COG:no KEGG:PGN_1510 NR:ns ## KEGG: PGN_1510 # Name: not_defined # Def: putative peptidyl-prolyl cis-trans isomerase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 718 1 715 715 509 39.0 1e-142 MATLQKIRNRAGLLIIVVGVALLAFIIGDGLRSGSSLLQDNKMVALKIDGKKVKYDEFQQ LLTERTEPYERQGKLTDQDRMQISNQLTQELISDYVLEQEAKAVGLRVTPAEVSALIFGE GLPTSQMAAQFFSQFGVNMGDPEQIRSVMSELDLNKIKALPAEQQSMMISVRNQWLETEK QIRSQRLSEKLNALLTRSYAINSLDEKYTTGLGSRTVAVVRTPSTILPNDQVKVTDQQVR AYYDSHKQLYAFPFEQAKVNYYSTLVRPSEADYAAAKANVDSARMQLLATTTPDKVVRNY ENGHAYETYFTDKELEQFLSTQPNAMTMLREGAIGSVNEPVIVNDSYTLIKLIDRKQAPE EVKVNIIPLDSTNAPKADSLIAAIQSGATTLAQVVATYSMDDQIKANGGYLINSDQYTGM PDSTFTESELFGMQLDTLNKTPINQFVKIERPGATLLIRKTAPSASVNLYKIAQLTVPIN FSEETYRKEQAKINEIFSGDKKFAQMMDAAQKAGLSVVRGEYVNSSSASLASIPNSREIV SWALRSKAGAVSDKIFRCGNNDYLVVAEVETKYPAGFQPFEQVADQIRDYVLMEQRGDQL AANLASKKLKSLDSYATEMQSSVDTLYNISYVSSPNTPAALVGNAMTTGIGQLSTPFRAG TEVVVLQPISENVDASVTKPSPAATAQRRRSYGQQMAYRAMQELIIRTPIEDTRYRFW >gi|228307264|gb|ACLR01000182.1| GENE 37 43134 - 44399 1389 421 aa, chain - ## HITS:1 COG:TM0845 KEGG:ns NR:ns ## COG: TM0845 COG1253 # Protein_GI_number: 15643608 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Thermotoga maritima # 12 415 19 425 455 170 31.0 4e-42 MADTIWLLVYIVLLLLLSGFFSGTEIAYLSADRLRLKLDSNRGGVVGRTLSMLYRRPDRF ITSLLVGNNIVLVIYGMLMARLFAPVLTSISSSPVFQITVNSLISTFIIVIFGEYLPKAR NRMNPNEQMYRKALPSGFFHILLYPITLFSIGLSKLFMLLLPKGAMPATEEHPKLTTLDL DNYLNMSQSGEGSSDLDTEVKIIQNAIDFSTTQVRDCMIPRNEIVSCEIGTDAETLTSLF ISTGLTKIIVYRENIDNVLGYIHSAEMFKGPDWQGRVRTAVFVPESMNGQKLMGILMQRK KSIAIVIDELGGTSGLITLEDLVEEIFGDIEDEHDQNKIVSKHNADGTYTFSGRLEIDDA NEQWGLALPTDDEYITIAGLIIHHLERIPVPGEQIVIGKLHFDIIKSTDTRIELVKMWKD L >gi|228307264|gb|ACLR01000182.1| GENE 38 44468 - 45076 626 202 aa, chain - ## HITS:1 COG:no KEGG:BDI_0182 NR:ns ## KEGG: BDI_0182 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 23 196 26 194 221 136 39.0 6e-31 MRHDNSSTVQMMRTLLCLLAGSLLVVTSCQRKDPPPLSDVGLDPETAYSMYTRDVRALVA DSGITQYRLITPEWYVYNKNEKVGREAHWYFPRGIYTEQFDERDSTTVFVEADSAFYWTD RKLWELHGEINVRNRAGSRFYSHLLYWDQEEKRIYTPDSVWIETPERKIQGCNFESDEQF TRYTFHGSSGQMLVKDDPEMSQ >gi|228307264|gb|ACLR01000182.1| GENE 39 45209 - 46579 1531 456 aa, chain - ## HITS:1 COG:no KEGG:PGN_1513 NR:ns ## KEGG: PGN_1513 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 456 1 450 450 489 51.0 1e-137 MKLKNLLITSILVLLATALTLGAQTGVETGTPFGSGDDSIQCRQNISLFTTYVKAKNFKE AYPFWLEALEKCPGSTKNIYLYGVQIINWKIEKAENDAARQDAIEKLFKLYDMRIKYFGD DPKYGKDYITTAKINDYLRLYGDKVSYDKIYEWAKPVVDEMGDQTESQLVYFFVFSSMNK AIGNPSWHEHYVDDYMTGNGILQADVDNLTEAGDTVKLQHLQTLKGQLDELFATSGLADC NMLIKIYGEGLEKNKDNVKYLQAMLDMFRYAKCENSPLYATASRYLYNIKPTAASAMGLA SDCINKGQMSQAKQYLIDAVSLTSDKRLQATAYYTLGVIDMKAHSYASARQYCNKAMAAN PSFGAPLILIAQMYAASAKSIFPGDPLRQRLVYGLAIDKLQRARSIDSSVSGEAGRLISQ YSRQLPSQQDIFFDPNLNVGDSFYVGGWIGESTRIR >gi|228307264|gb|ACLR01000182.1| GENE 40 46616 - 47923 1195 435 aa, chain - ## HITS:1 COG:no KEGG:PGN_1514 NR:ns ## KEGG: PGN_1514 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 27 435 30 434 434 293 38.0 9e-78 MSRHIARITTIVTLLATIFLMPITASAQSNNTESPYSRFGLGRLDKQTPHALRGMGGLTT AIRDNMIINPANPASYTAVDSMTFLFDFGLSTGMNMLSEAGKRDTRMVGNFDYATALIPL GKHFAASAGLVPYSTVGYRYGTKVSVPGVQDHYAAHAYKGEGNLQEVYLGFAWKPLPYWS LGVNASYLFGNIQHERRITYDIKESLNPTFLDHLRIRSVGVRIGTQGIIPLSAEGHQINI GLTYEPKLPMWSRQLSLQTETVTGKGAQVIQTDTITSKSLFARPHVFSAGLAYQIENKLI AGADVKYSRWGEALATNQSLDYQGVDQWQVALGMSWIPNERSSSYGQRIAYRAGLQGENA YLRIPNSLGGHNSYYQIGANLGLGLPLVDRRSHVDVTLGYSYLLPSSRTGLAEHYLTLGV ALRFNEAWFNPIKLD >gi|228307264|gb|ACLR01000182.1| GENE 41 47980 - 48762 524 260 aa, chain - ## HITS:1 COG:BH0086 KEGG:ns NR:ns ## COG: BH0086 COG1521 # Protein_GI_number: 15612649 # Func_class: K Transcription # Function: Putative transcriptional regulator, homolog of Bvg accessory factor # Organism: Bacillus halodurans # 67 224 68 224 254 67 26.0 4e-11 MSHTYILIDQGNSRLKVALATDAQLYPTRLYPEPPSSDQLLELLRMYQLPEQPLYAIYSS VGEREAPWLESIKGICQRFVTLDAETPLPLAEVQYDRQCLGVDRIASVVGVAQLTTEPSL VIDIGTAITYDLLLPERRYMGGNISPGPELRLQALHDYTARLPRVPWSDIQSHLDLWHQE LGEQTDQAIWLGVARSIVHEIDSYIEGLRKRYPSLEVWITGGYAVDFVKWLKYPTFVETN LVERGLRDILQYQVARSHDS >gi|228307264|gb|ACLR01000182.1| GENE 42 49075 - 50241 1378 388 aa, chain + ## HITS:1 COG:CC2845 KEGG:ns NR:ns ## COG: CC2845 COG2885 # Protein_GI_number: 16127077 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Caulobacter vibrioides # 290 370 87 167 191 72 46.0 1e-12 MKVKFFLISLLLGVTTLTLSAQETAAPQAGTKPVYKTTFEHGTAADHWFLTLQGGVGAQF ISCNDAKPFMDRLQMSYSLSLGKYHTPSFATRLNLVGAQAHTYYKVGDELKNYETSFVGA HYDFMFDIVNHFSRYNAKRVFHIIPFAGVGYNMKFNKAFEDLHHTAAIDAGLQLQFRLGR RADLVIEGKAIYNNFNFDYSNCPKAKVWNPNAYNGLYGALTAGLNFRMGGVEWTEVVPMD YNLINDLNSQISSLRAENAELSKRPVSCPECPELAAQPAKTTEVMSDKTILFKFDSSRID KNQMITLYNVSEYVKAHNTPILVIGYTDTTGNAQYNLGLSERRAKAVAKALVNDFGVSAD MITTQWEGATDKLFDTKAWNRVVIIRSK >gi|228307264|gb|ACLR01000182.1| GENE 43 50293 - 51459 1492 388 aa, chain + ## HITS:1 COG:no KEGG:PG0694 NR:ns ## KEGG: PG0694 # Name: not_defined # Def: immunoreactive 42 kDa antigen PG33 # Organism: P.gingivalis # Pathway: not_defined # 1 385 1 376 380 347 50.0 3e-94 MKAKVFMLSLVVALTAFVAQAQEASQVDNRPAYKTEFEQDPAAHWFIELHGGAAMLPFGN KANGEAEFVNRISPIASLSFGRWHSPYFATRLRGYAWNVYSFDKLPGATEVTRYQNLFGA ASLEFMFDLVNYFAPYRENRVFHLVPFVGLGGHMKFYSADDKSGDKLGTENDYSGLLNGG LALKFRLGKRVDLNLECQMMVSKNNFQGTYTVHQPADVTALASAGLTFKLGKVEFQPVTP MDYDLVNDLNGQISSLRAQNAELSKRPVSCPECPEAAPAKTSAVIENVVAFRIGSAKIDK NQMINVYNSAEAAKANGGKIYIVGYADEQTGNAKINMSLSQRRAEAVKKALVNKYGVNPD NIVIDYKGDTVQPFATNEWNRVAIIDIK >gi|228307264|gb|ACLR01000182.1| GENE 44 52245 - 52643 629 132 aa, chain + ## HITS:1 COG:no KEGG:PG0319 NR:ns ## KEGG: PG0319 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 132 16 142 142 155 62.0 4e-37 MKRIAILTTILLLCATLAGAQNKQTGKQSGPQITATETEFDFGSIKEVDGPVSHTFTIKN TGTAPLVLTRVVASCGCTKPEFETAPIAPGKSTTIKVTYNPAGRPGQFVKTISVYSNGKD GSYILRIKGIVE >gi|228307264|gb|ACLR01000182.1| GENE 45 52771 - 53868 1010 365 aa, chain + ## HITS:1 COG:no KEGG:PGN_1642 NR:ns ## KEGG: PGN_1642 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 37 360 37 358 362 172 34.0 2e-41 MATRRMVALLLCLATTLCVVRAQQTEKMIDSLSAIHNFGTIAEERGTVSHSFTLRNVSDQ PMVILRVNTDCGCTTPTYDRTAVAPGDSIPIQITYNPLNRPGSFVKYTRVYTSVDPSRPV KLTIKGNVATLGRQTPTNALYQQEIGALQVSNLFLDFPLQPAGEENTIRLMLNNPTGQPL EVSLDTVPSFLSTSISRATLAAYEPEEIFLKAHNDGSIAPGIHKGWIGITVHTQDGESDL SGGVMVRLVMPPSFVKGAPTPRADLKTYQRLTDLTPEDQVYEGTVALKNDGEAPMQLYSV ESNTVFLTILDYPKTIAPGASADIRYQLKLEGVDRSRRALKANFDLLLNDPNAPLRNVLI VVPKR >gi|228307264|gb|ACLR01000182.1| GENE 46 53979 - 55082 1532 367 aa, chain + ## HITS:1 COG:BH2954 KEGG:ns NR:ns ## COG: BH2954 COG1703 # Protein_GI_number: 15615516 # Func_class: E Amino acid transport and metabolism # Function: Putative periplasmic protein kinase ArgK and related GTPases of G3E family # Organism: Bacillus halodurans # 38 367 5 334 340 333 50.0 2e-91 MLTNDHPENDPRYAGLKVNKGVSVQPMVNPYLRQQRVQREDYPAERYIEEILAGNRTFLA RAVTLVESTRHDHQLKAQQILEGCLPYSGQSMRVGITGVPGAGKSTSIDAFGMHLIKQGH KLAVLAIDPSSEISKGSILGDKTRMERLSREERAFIRPSASSSSLGGVARKTRETIILCE AAGFDTVFVETVGVGQSETAVHSMVDFFLLIQLAGTGDELQGIKRGIMEMADGIIINKAD GDNVDKARLAAQHFRNALQLFPTTESGWEPKVMTYSGLKGIGIKEIFDMIDTYRQTTKES GYFDYNRRRQEKWWMYETVNEELRRSFYDNEQVKQLQESVEHEVLENHITPFVGAGRLLE AFYKSLK >gi|228307264|gb|ACLR01000182.1| GENE 47 55131 - 55463 475 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470947|ref|ZP_04055792.1| ## NR: gi|228470947|ref|ZP_04055792.1| hypothetical protein PORUE0001_0354 [Porphyromonas uenonis 60-3] # 1 110 1 110 110 144 100.0 2e-33 MADLDFEQLDRGAVQYMRNHLDPSFIKEYDDDEIFLYVMDLCDDYTETQGDDEEVCLDLD AMAAYVSDHLSQDMGVKMHEDDAYDLVSTLYDYYAEEGLVDVIDTDEDQE >gi|228307264|gb|ACLR01000182.1| GENE 48 55483 - 56277 741 264 aa, chain + ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 30 217 22 206 217 105 32.0 1e-22 MARRKLEKFADLHSYPNVYEYGYAELSSPEVAGEIAGGWSGCAFDADRPLVLELGCGRGE YTVALAQQDATHNYIGVDRKGARMWHGATEALDKGLTNAAFLRTDINLLPLAFAPGEVSE LWITFPDPQMKRTRVRLLSSAFLASYNRYLKPDGVVHLKTDSTFLYEYTLSLLEVNGVEP IVALADLYQEESLLTQYGIPRVLTHYEKQWLGRGKVIKYIRFALPMREQWLEPESEPEHD DYTSWSQVPGGLLHQVERAFAQEE >gi|228307264|gb|ACLR01000182.1| GENE 49 56307 - 57422 1388 371 aa, chain + ## HITS:1 COG:alr0652 KEGG:ns NR:ns ## COG: alr0652 COG0489 # Protein_GI_number: 17228148 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Nostoc sp. PCC 7120 # 6 354 7 350 356 245 42.0 9e-65 MNSYTTEQVLDALRNVRYPGTGTDIVTSGIVTDDIQIDGRQISLTLHFPRVRDPFARSVV KAAETAILTFLDAKADVAGRIKATFREEPEQPEVENPLPMVSNTIAIFSGKGGVGKSTVT SNLAVALARQGYKVGLLDADIYGPSMPKMFHCEDARPVAEEVDGKDRIAPIVVTEGIKML SIGFFVSPNQALLWRGTMASNALKQMLTEGHWGELDYLLIDMPPGTGDIALTLVQTLPLT GAIVVTTPQEVALVDAMKGINLFQTDPVNVPILGLVENMSWFTPAELPDNKYYIFGRDGG KRLAEQLHIPLLGQLPLVQSVCEAGDAGEPIAAQSDQVMSHYFAELATAVTERVQERLTM APATKRVHVSH >gi|228307264|gb|ACLR01000182.1| GENE 50 57602 - 58969 881 455 aa, chain + ## HITS:1 COG:no KEGG:PG0188 NR:ns ## KEGG: PG0188 # Name: not_defined # Def: putative lipoprotein # Organism: P.gingivalis # Pathway: not_defined # 10 449 8 448 456 100 27.0 2e-19 MIRTIQSLHRYLLLAVALLPLISLPSCQRKALVEDVQVESVLISELKLSDKSVPELEKTI FSIDHRKGLIYNARPLPKGTKIGRVKLKITASPDALPKVYIGGVEQPSTSGLDTINMSKY AEGVRIVMHHRKNASLTKEYKLMINIYDRDPYTHTWTKSAHAAPAVAMNENIVLSRLVDN GEAYYYFARTAIERHLWRASHKEPELWQEVTISTLDSPIMDIAELGGSDAILCLQESGQM VIYEHQGGKWNQSNALPGRASYLLGNLYYRGANTPLVAVKSTDGVHFGSERGIRVPKAFP LEDNARLSLTIEHHPVSFLIGGPVADTTALVYTTSNGLDWLTPHDAKVVSKIWPSSLPGA MIYEPKDQTILLVKPAARPKHAEQPAMRVYVSLDHGTVWQPLTEESILPPLYYDKGQKHQ RGLALYRGDDGRIYLFGGLKGGAPTLWIGQPIRFK >gi|228307264|gb|ACLR01000182.1| GENE 51 58988 - 59722 747 244 aa, chain + ## HITS:1 COG:no KEGG:PGN_0297 NR:ns ## KEGG: PGN_0297 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 12 232 18 233 235 139 37.0 1e-31 MPTRSCLLAPLLLMLCAVSLTAQEYRYEMGGYVGAASYLGNANRRIPFVPIGGMGGVAFR YNHNFRLAFSGELGYSFLPFDCRYAQTDYPQAREANQAIRGASHLLALNGWAEYNFAHYS DKFRYLQTRSLVPYIGAGLSVGTTLSGHKMAFLPGAGIKTGIKYKLRNRLNLIAALQGIY YLSSHLDTPTEQTGWLNNPYGMPANWIKGGDATIGLIVSITYEFGKRSEPCHGSDSYPNW QIPK >gi|228307264|gb|ACLR01000182.1| GENE 52 59722 - 60435 782 237 aa, chain + ## HITS:1 COG:SP0261 KEGG:ns NR:ns ## COG: SP0261 COG0020 # Protein_GI_number: 15900195 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Streptococcus pneumoniae TIGR4 # 4 235 18 252 252 225 47.0 5e-59 MKQQTPQHIAIIMDGNGRWAQRRGLSRSYGHKQGVDALETILSAVADRGIPYLTVYAFST ENWNRPEAEVNYIMQLLAEGLHHYTPRFIKEGVRLRAIGDIDQLPAETAAQLRDSMEQTK DGKRITLGMALSYSSYTEVSHAIQHIVADVQSGRLSNDDLSRPDLINDYLYTSGMPMPDL LIRTGGEQRLSNFLLLQSAYTELYFTDTLWPDFDEAELDKALADFALRQRRFGTVPQ >gi|228307264|gb|ACLR01000182.1| GENE 53 60484 - 63204 3311 906 aa, chain + ## HITS:1 COG:XF1046 KEGG:ns NR:ns ## COG: XF1046 COG4775 # Protein_GI_number: 15837648 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Xylella fastidiosa 9a5c # 50 536 35 484 784 131 23.0 8e-30 MQRYHNILFALIALLAVTTASAQVATTPADTIYAPTIDYARPVTKTIAGVTITGAQGYDQ EVLLGYTGLKVGDKIEIPGVATTAVVQQFTRNGAFANARVLVTKYVGDKVWLEVQLEQHP RIASVTYHNIKKSEQEDLEAKTGLRESMQLSPNVLDRTEQLIQKYYNEKGYSEMEVTFDQ QPDLSREGYVKLGITVDKKYKTKIANIYFSGNKALSDTDLRKAMKKTNEVFRLNRGNLWN SLLELFQSKKFIQDTYQEDLRNILNAYHKAGYRDAEILSDSIARNPKNDKQIDIFINISE GHRYYIKDINFVGNTKFPTPLLEAMLGMQHGDVYDQDRLTKRLYVEDDAVANLYYNNGYI FSGIDPVETYVEGDSVSLDLRIVEGPQATIDKVIIRGNHDIYEEVIRRELFTKPGKLFSK EDMMNSWMTLNQLGHFDPEKSFPTPIPNPQEGTVDIEYSLQRRNNDKFELSFGWSQAGII GRAGINFTNFSIYNLFHPKAYRGLIPQGDGQTLSFNAMSNGRYYHSFSLQFSDPWFGGKR PNFFTASLFYSMQTAIDTRYYNNRTQGMGYYPGYYGGYGGYGGYGGYGGYGYGGYGGYGY DGGYRQSLMENSYNPNQSMHIFGATVGFGKRLNWPDNWFNVNATLNYTHYYLRDWVYETF QGFHNGHANDISLTLALSRNSIDNPIYTRRGSSFTLSVSATPPYSLWDGIDYSNINLKSE DRYRFVEYHKWKFSGKVFTPLMNPATVKYTPVLMTRLDAGFIGHYTPFKRSPFGTYYMGG DNMSGYVGNFLNETIPLRGYSNGSIAGGNYDYAYAYMRMMAELRMPILFEGQYNVWAVAF LEAGNAWRDLSNFNAFNLKRSAGVGFRITLPFLGMLGLDWGYGFDKPDGSSQRGGSNIHI VMGQEF >gi|228307264|gb|ACLR01000182.1| GENE 54 63302 - 63820 774 172 aa, chain + ## HITS:1 COG:no KEGG:PGN_0300 NR:ns ## KEGG: PGN_0300 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 170 5 174 174 209 62.0 2e-53 MRKHLYLLTLLLALTLGASAQKFALVDMQYILKNIPNYEMMNEQLETVSKRWQQEVKTLQ DKAETLYKKYQSDLVFLTAEQKRQREEEIVKTEQQATELQGKYFGPEGELFNRRSKMVKP LQDEIWQAIKEIASQGGFQLVLDRSTAGIVFANPSIDISDQVLEKLGYGRKR >gi|228307264|gb|ACLR01000182.1| GENE 55 63861 - 64361 775 166 aa, chain + ## HITS:1 COG:no KEGG:PGN_0301 NR:ns ## KEGG: PGN_0301 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 23 166 19 162 163 122 52.0 7e-27 MKTKNLFLSLLLLLLPVVATAQQKIAVVNSQELIAAMPDMKAAQDRLQELDKKYTAEMQT MNDEYQKKLELYMKDKGGLSEALLKSREQELADLQSRIQRSYQAMQQDMEKQQATLMAPI QQKIVEAIKKVGDAGGYTYVMESTMMLYTGSAAVDITAQVKKQLGI >gi|228307264|gb|ACLR01000182.1| GENE 56 64860 - 65801 877 313 aa, chain - ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 10 229 5 225 328 122 34.0 7e-28 MNIAPETRPLLSIIVPVYKVKAYLAKCVTSLCQQSYEHIEIILVDDGCPEGCGELCEAFA KEDARIIVLHQTNQGQAAARNAALEIAHGDYISFVDSDDYISPDYYVSHITYLERHPEVD ISIAGIQNVDEEGVPLALSPFQPRTERLSLVGVEAVSDYLLQIHFAQGIYRAAVWASIRF PQGIILEDCYVIPEICQHTRAISASYVGTYYYRQRGGATMSAFTARHLACFRIVTEHHLA YFAQTNRRLYYHRLAVAYIYSWRHRKLLTHMELRDYRSELAQHPIQLKELLTIRGLKHTL RLRLLLIYFRRHL >gi|228307264|gb|ACLR01000182.1| GENE 57 65805 - 66899 1281 364 aa, chain - ## HITS:1 COG:SP1375 KEGG:ns NR:ns ## COG: SP1375 COG0337 # Protein_GI_number: 15901229 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Streptococcus pneumoniae TIGR4 # 20 358 25 352 355 172 34.0 8e-43 MPPLAFISTQSRVLVGNLMGDYLRELLRQGKPESYYLLADEQVWHLSQELIAKNYPELTE LPRYLINDPEEAKSLEGITEMARWLLEQGATRGATLIALGGGAVSDAVGFLAQIYMRGIS LVLLPTTLLAIADAAVGGKCGVNFAGVKNLLGAFADEATTLTLCDTAWLESLPEEELRSG CGELIKYGLLVGPDLWRRLLQVLPEQPLSLEQLTPLIREAVQFKLDIVAQDRLDQGLRHQ LNLGHTFGHAFEAWSHQHGDKPLLHGEAVALGLVPELYLSHVKLGFPKEVLHQLLAVVQE LYRPLSITCRDYNALRELMLHDKKNSDAQRITTVALSGIGEVHELQNASLDITEALDYYQ DTML >gi|228307264|gb|ACLR01000182.1| GENE 58 66911 - 69526 3516 871 aa, chain - ## HITS:1 COG:ZalaS KEGG:ns NR:ns ## COG: ZalaS COG0013 # Protein_GI_number: 15803211 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Escherichia coli O157:H7 EDL933 # 5 866 7 866 878 647 44.0 0 MTAHDIRQAFLDFFEEHGHRIVPSAPMVIKDDPTLMFTNAGMNQFKDIILGNKEPQYRRA ADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKKEAIEFAWTFLTERLHLP KDRLYVTVFGGSAEEGLSRDDEAAGYWLQHTTEDRIIDGSRKDNFWEMGDTGPCGPCSEI HIDLRSEEERQEICGRDLVNKDHPLVIEIWNLVFMQYDRKADGHLEPLPHKVIDTGMGFE RLCMAMQGKKSNYDTDLFTPLIRAIETLSGEQYGQNEQVDIAMRVVADHIRTIAFAIADG QLPSNAKAGYVIRRILRRAVRYAYTFLHADEPMLYTLLPTLNEVMGGAYPEIVAQRELIA SVIKEEEESFLRTLAQGLKLLESKIQELPQDAKVLSGADAFVLYDTYGFPLDLTELILSE RGMTLDQVAFDKLMQEQKSRARQAAAVDAADWEVLDEETSESTFVGYETLQIETHILRYR KVADKKHSYYQVVLAETPFYAEMGGQVGDKGVLIAQDGTEYPILDTKRENNLTVHILSTL PADPKQPLIARVGAELRHLTEANHTATHLMHHALRAVLGTHVEQKGSLVSADLLRFDFSH FKKVTPEEIAEVERLVNAEIRADRPRDEHRNVPIAQAKEMGAMALFGEKYGDEVRVIKYG DSVELCGGTHVASTGQIGFFKIISEGSIAAGIRRIEAVTGPKAEEYVHHLEEQLQLFNER LNNVPDPLKALDRLIAESAEQRKAIEQYTKAQAEQIALQALADQTKRGETTIVTVNKSMS SDVAKDVAGTIRERLQGSYLALIGAAEEGKCTLTVILSPDLVDKGLNAGKLIKEVASLIK GGGGGQPHFATAGGRNPEGLQAAIDHIVSLI >gi|228307264|gb|ACLR01000182.1| GENE 59 69620 - 69847 226 75 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470994|ref|ZP_04055839.1| ## NR: gi|228470994|ref|ZP_04055839.1| hypothetical protein PORUE0001_0367 [Porphyromonas uenonis 60-3] # 1 75 1 75 75 129 100.0 7e-29 MARQIILHPGERIALRQLLYRGELLCSVLLTYHDRERGIELTSWHYDEPPHTLYYSGTWH LVEDDADHHYLLRHE >gi|228307264|gb|ACLR01000182.1| GENE 60 69888 - 70850 860 320 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470946|ref|ZP_04055791.1| ## NR: gi|228470946|ref|ZP_04055791.1| hypothetical protein PORUE0001_0368 [Porphyromonas uenonis 60-3] # 1 320 1 320 320 564 100.0 1e-159 MRAFSVKTSLLKLGLLSVLLLLLGSGCKKRSWQRIPNDKLEQILTELYSARGIGQTLYLN SDQQDSIYVSILQAHGVSQEDLDSTIYYLSASKAKLLQKIIAQSSASIQREVDILERTTG FFRVGSEDGENNFYSPLPDTLSYPVTPLSTYPICINSRQSSYIWKVALADLPHLPDTIHQ IEIQGLISGSHIPEQGQMPCIALSKQLDAKTPPLAMESVSTRLPIGGVFVLTLGESAPES TAEPSEPEEPTIPTDSLLSGLTDSLANSLPESAPKKEHKCAIPHFSAKDTLTIAIYSLPT DYLGTQSLHFRLHDLRIIAR >gi|228307264|gb|ACLR01000182.1| GENE 61 70857 - 71537 802 226 aa, chain - ## HITS:1 COG:no KEGG:PGN_0515 NR:ns ## KEGG: PGN_0515 # Name: not_defined # Def: probable lipoprotein signal peptidase # Organism: P.gingivalis_ATCC33277 # Pathway: Protein export [PATH:pgn03060] # 10 208 13 207 226 199 53.0 5e-50 MTRTSQRHWIVAGLILLLIVIDQVVKIWIKTHMYVGQEYHIFDWFRIYFVENRGMAYGVE LGSKLLLTAFRIVAMAGLGVWLTRFVRQCRHYSLGFCIVIGLVLAGGIGNLIDSLFYGQL FTSSIGQVAQFVPTTAGAVGYAPWLEGHVVDMLYFPLFTTVLPEWFPIGGGEPYTFFSPI FNIADSCITVGVLALLICYPRTTTRALDRLWIYLRGKHRHTSKRAK >gi|228307264|gb|ACLR01000182.1| GENE 62 71556 - 71936 690 126 aa, chain - ## HITS:1 COG:no KEGG:PGN_0516 NR:ns ## KEGG: PGN_0516 # Name: not_defined # Def: putative DnaK suppressor protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 6 124 4 126 126 117 59.0 9e-26 MEDSGKKRYNPEELEEFRILIEKKIAQAREDLNMLRADNVNDISDTTPTYKDLDEGAITQ SRLENDAQAQRLQDFIEKLEAALLRIQNGTYGICSVTGKLIPKERLRAVPHTTKSIEAKL NRDKRK >gi|228307264|gb|ACLR01000182.1| GENE 63 72022 - 75435 4123 1137 aa, chain - ## HITS:1 COG:CAC3038 KEGG:ns NR:ns ## COG: CAC3038 COG0060 # Protein_GI_number: 15896289 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 10 1136 8 1033 1035 804 38.0 0 MKKPFKEYQSADFAQINQEMLAQWEQEQLFHRSLHQREDAPLFTFYEGPPSANGMPGIHH VIARSIKDIICRYKTMHGYRVDRRAGWDTHGLPVELGVEKKLGITKDAIGKTISVAEYNQ TCRKEVMKYTAEWESLTKQMGYWVDMEHPYVTYKNKYIETLWYLLKELYKKGLLYKGLSI QPYSPAAGTGLSSHELNQPGCYRDVKDTVCTAQFRIIDAPESLHGRGESFFLAWTTTPWT LPSNTALCVGPSIEYCAVETFNPYSAMPITVVLATTLLGSYFDAESEVSELPETWDKETY KKAPWHRISTCKGSDLVGIRYEQLIPWVNPGEGAFRVIPGDYVSTEDGTGIVHIAPTFGA DDERVAKAAGVPPLLMIDNKGQLRPMVDLKGRFYKIEALDHQFLKESVNVPLYDTYAGRY VKKDYDPKDTPDKETLDVDICVMLKHENRVFRVEKHTHNYPHCWRTDKPILYYPLDSWFI RSTACREEMMRLNETIDWHPAAIGVGRFGKWLENLQDWNLSRSRYWGTPLPIWRTEDGDE EICIGSVEELYKECERAVQAGVMSANPLAGFTPGDYSEENYDKIDLHRPYVDEITLVAQD GKRPMRRESDLIDVWFDSGAMPFAQVHYPFEHREEVESGKVFPADFIAEGVDQTRGWFFT LHAIATMTQGSIAFRNVLVNGLVLDKDGNKMSKRLGNAVDPFGVIQQYGSDPLRWYMITN ANPWENIRFDPKGVEEVSRKYFGTLYNTYQFFALYGNLDGFDPAVAQIPYADRPEIDRWI LSRLNSLIKEVDGKLGSYDPTPAGRAIENFVTEHLSNWYVRLSRKRFWAGSMTDDKLSAY QTLYQCLSVVAQLMAPIAPFYADRLYRDLHEESASVHLSDYPVADEAQIDLDLERSMELA QIYSTLVLSLRRKVNIKVRQPLSAIMLPVNDPADKIHMEQVHDLLLSEVNVKDIRFVDPS DSIWVRTVKPDFKALGPKVGKNMKALAAQISTLSTEQINELEQTGQLTLTVGDQPIVVDL GDVQIIAQDIPGWTVANEGRHTVALDITLTPELIAEGTAREFVNRIQNLRKQSGYEVNDH IELLVMAPEEVVQALRTHQEYVQTQVQADTIDYSEVLSDAEEIDLDGTPIAVQISKV >gi|228307264|gb|ACLR01000182.1| GENE 64 75571 - 75771 72 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 7 64 12 69 91 67 62.0 2e-10 MTPRSPLIAISPEEIKNRQGANENSPRSREIKVRKNEMKLRKKQIKVPKNFFIPHWRFEN LHRGIV >gi|228307264|gb|ACLR01000182.1| GENE 65 75876 - 77060 1021 394 aa, chain + ## HITS:1 COG:MTH341 KEGG:ns NR:ns ## COG: MTH341 COG1035 # Protein_GI_number: 15678369 # Func_class: C Energy production and conversion # Function: Coenzyme F420-reducing hydrogenase, beta subunit # Organism: Methanothermobacter thermautotrophicus # 10 313 11 312 406 63 26.0 5e-10 MIQIEDKRRCCGCEACRQVCPKECIRLERDEEGFGYPVVDLERCIECHKCERVCPFMQLG APREPLAVYAACATDEGLRKSSSSGGLFTLLAEETLSRGGVVFGARFDETWGVCHDYTET VEGLAPFRGSKYLQSRIGDNYQRAELFLKEGRPVLFTGTPCQIKGLVHYLGRAYDNLTTV DVVCHGVPSPMVWQRYLTTLRAGQGEITGISFRDKSVSGWRRYDFVLQNTEGEGMRQFYG DNIYMRGFLHDLYLRPSCYACMAKGGRSQSDLTLGDYWGVERTCPDLDQALDENKGTSVV LIHSAQGQRLWSELTCRSQETTYASAVAGNPSIEQSVAEPPKRQLFFEQINAEPLDSLIA RLTATPLHKRLWRHLHHQAHRVKLRLRHLAQRAH >gi|228307264|gb|ACLR01000182.1| GENE 66 77142 - 77462 155 106 aa, chain - ## HITS:1 COG:no KEGG:Coch_1865 NR:ns ## KEGG: Coch_1865 # Name: not_defined # Def: protein of unknown function DUF805 # Organism: C.ochracea # Pathway: not_defined # 3 105 1 101 286 85 41.0 6e-16 MKMFRKPFSTEGRIRRLEYGLTLITLTFVQAFARAIMESASGASSVMIVALPILLVCTWI MIAQGVKRTHDLNQSGWWILCPGWPLIILFWKGDVGDNKYGPDPKA >gi|228307264|gb|ACLR01000182.1| GENE 67 77517 - 78227 347 236 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470961|ref|ZP_04055806.1| ## NR: gi|228470961|ref|ZP_04055806.1| hypothetical protein PORUE0001_0373 [Porphyromonas uenonis 60-3] # 1 236 1 236 236 462 100.0 1e-129 MNVDLACWYADDCLKYPLEYPSDYIPLKSYGRICRDEYSKTTSLQLSVERSGDIISYIFF KRLNTRVYVGINLYINGLVYTNLDKLAELFAPKVDNLQHILSREGNTVTVEASIEPLFNQ LRSALSSSSIYKTKPLSPMDYSLSTGYYRFYYWGSSTANEIIQSSEKGETYILGLCPNCE ALVYSEVPDDSETSNDREVPNEKPKKRDKKGSDALVPLVVILVSIALGLLRAWIET >gi|228307264|gb|ACLR01000182.1| GENE 68 78266 - 78856 225 196 aa, chain - ## HITS:1 COG:no KEGG:PRU_2004 NR:ns ## KEGG: PRU_2004 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 62 192 546 673 681 101 37.0 1e-20 MTKHRKVYSLVVYILLLSFIFLSLISCQCSTESNGDSDKIWFDFGTPSAEEIVGSSSYPL EGVNNQIEVPFERQAGVKFVSVKLNGIPMEMILDTGCSSTLISVAEANYLYSKGLISEED IIGETYSQIADGSLRVGLEINLRELEIGGEEALTFQNVRAVIDKNVNAPLLLGNEVFDRV GSVTVDNDRDVVIFSK >gi|228307264|gb|ACLR01000182.1| GENE 69 78853 - 79902 397 349 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470968|ref|ZP_04055813.1| ## NR: gi|228470968|ref|ZP_04055813.1| hypothetical protein PORUE0001_0375 [Porphyromonas uenonis 60-3] # 1 349 1 349 349 640 100.0 0 MRLEVFIFGAEDGAVAYPNTDARYFESMFYQTPDIKRVPILDVRLRLIDGRCFTDYTLLL YGLTATIGRPDAHIGITYRLEGYVDKCTHIYHFLMNEFSGKVDGVVVNRDRFIKPISDFK ELPQVLEQRFASCFDDQDITPIISSQKADSRIIPYNPKDIDDAEIKRRVFAREVIRISDS YPSRELLAMQERQTKMKTKYAKEIEETEARVKTQAQERINSLQTQIDRLAEEKKRIITSK ESSDATIQEIRKLLQLSPSAAVTLSKEELFKPQDIASNAKGLHRQTHLLSRPALQVGLLL ISCVVSLLTLLFVSGIIASSSSSHTKSASPTPTEHVQDSTKSASISTPQ >gi|228307264|gb|ACLR01000182.1| GENE 70 79904 - 80902 619 332 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470900|ref|ZP_04055745.1| ## NR: gi|228470900|ref|ZP_04055745.1| hypothetical protein PORUE0001_0376 [Porphyromonas uenonis 60-3] # 1 332 1 332 332 650 100.0 0 MAIEIPTKQNSEEPEFLRDSIDSPSPIESSTDEVNTEENEAITSINQDFDEETKPSMHYT GESKKILDPMRVKVEIADARTPIVVLFGPKTSGKTMMLVRLTRWLKKNGLSVMPIRTFRP ADDNYKKMCDSFNDMVDSNEAAKGTNAIDFMLLKVSKDGRPICQILEAPGEHYYNSERPS QSFPPYIHKIISELRNKKIYVILTEGDWRNQETQDSRDAYVQKIDSLRRLSDIKDKFIVV LNKVDLTEFTLSKGLYNKPQARRAIKNLYPRIFKIFENQHPITRFFRPSYATFMAFQSGE FSQTADGETFIYTPGADAYAKELWNQIISACN >gi|228307264|gb|ACLR01000182.1| GENE 71 80940 - 82001 837 353 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470986|ref|ZP_04055831.1| ## NR: gi|228470986|ref|ZP_04055831.1| hypothetical protein PORUE0001_0377 [Porphyromonas uenonis 60-3] # 19 353 1 335 335 617 100.0 1e-175 MEQKSIWRLIFFIAFIALMGISCWATTESIHLLLPSWPVIFCWIVTITFFFIASYGSKLI VDSLNMNIYYHSRGKSLIIGIILLILFWLLFSMPTNTHTFFYRSAINDVALKDVGTTQKY ILELADDSYTQNNIKLNIEKLKRDVSAQQLALEAEIDNSANPGFGTKAKSLLSGLAHSLG IDVIPTLSYRGTSPAERKKLKEEYSKIIHKHLEARIAEIKKNGEDSRSSRYKPEALELAK QLESAKGALSEAKARGLIDKSLISNVDALLARSYNTIKNYQDLINISDEDKPVYLAESSV TRTHRMLSVVEVWKDIFKGKYAGREVILWILVAVLVDVAAFIFFTLATKKEEE >gi|228307264|gb|ACLR01000182.1| GENE 72 82500 - 84188 1931 562 aa, chain + ## HITS:1 COG:VCA0077 KEGG:ns NR:ns ## COG: VCA0077 COG0659 # Protein_GI_number: 15600848 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Vibrio cholerae # 23 553 18 548 553 387 44.0 1e-107 MSIMKGLVPEFFLSLRGYSRQLFVKDLTSGIIVGVVALPLAIAFGIASGVSPTEGLLTAI IGGFLVSLLGGSKVQIGGPTGAFIVIVYGIIQQHGLDGLAIATIMAGLLLMLLGFLRLGS LVRFIPYPIIVGFTAGIAVTIFTTQIADLFGLQIESMPGDFIGKWQVLIANFATGSWIPF AFAVGTILIIWLLPKVNAKIPSTLVALVLLTLVSFGLQQLGYLRPENIGDNYTIERALPT FVMPTITVERIVALFPSALTIMLLGAMESLLSASVADGVIGAKHNPDSELIGQGVANVVV PFFGGIPVTGAIARTMTNINSGGRTPMAGIIHAVVLLLIMLLLSPLTAHIPMAVLAGVLV VVSYNMSGWRSFVSIFKGPRGDTAILLVTFLLTVLTDLTVAIGVGMLLAIALLFRRILNV SSVEQIGVGEITDEPLADENVELPSRVEVYEVEGPFFFGIANKFEEVMVTVHDQPEVRII RMRRVPFIDSTGLHNLQMVLARQRRRGVHVVLSGVRPAVYTHLEQTGIIDQLGRENVLPT FAEAQRRAVALYEEITEAVAKS >gi|228307264|gb|ACLR01000182.1| GENE 73 84232 - 84849 680 205 aa, chain + ## HITS:1 COG:no KEGG:ZPR_4443 NR:ns ## KEGG: ZPR_4443 # Name: not_defined # Def: hypothetical protein # Organism: Z.profunda # Pathway: not_defined # 28 205 15 184 184 73 33.0 5e-12 MTERLTRLILSTMLLALSSLGLAAQEVVVPGEPEPPTPEKRNEVRLNLHAPIPYQALSLE YERAVALDVGVGVMASAYFGKERLNVLFFPTVGVMPYGRWYFGGFLFSMKKPNAGFFLEA NSSIAYNDNLRNVHYEYSPETEKREKQIEERHGVSWGIGLGGGFKLVTRSNWSGEISCRL GRNMVKVSKWNVAYIYPAISVGYRF >gi|228307264|gb|ACLR01000182.1| GENE 74 84957 - 85982 1167 341 aa, chain - ## HITS:1 COG:NMB1308 KEGG:ns NR:ns ## COG: NMB1308 COG0820 # Protein_GI_number: 15677174 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Neisseria meningitidis MC58 # 15 338 13 346 364 232 38.0 9e-61 MTATHQILGKTPAQLTELAVGLGLPKYTGRQIADWLYQKHVSSWDEMTNLSKKARALLAS HYEIGRAAPHLQQTSRDGTVKYLFAAGGGFVETVMIPEGDRATLCVSSQRGCKMNCLFCM TGKQGFGANLSTSEILNQILSVPEVNELTNIVFMGMGEPMDNIDTLLQVITCLTDPQGLA MSPKRITVSTIGLRPGLERFLEECTCHLAISLHNPLSEERLSIMPVERAMPLADTVALLR HYDWSRQRRLTFEYIVFSGLNDTPRHLAALKRLLAQLDCHVNLIRYHRIPHIDLPSSDMT RMEWLRDWLCEAGIPTTIRTSRGEDISAACGMLSTQEQQGA >gi|228307264|gb|ACLR01000182.1| GENE 75 85997 - 88174 1133 725 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 46 725 20 702 730 441 34 1e-122 MTKPSRKKNTPKKNLSKRSKTERLNLDELTRAVVKLFASNPTHTWNYKQVSKQLNITAQP LRLTISRILEVLAMDDTLTRVKPGTYRYNLSGALLFGTFERRSNGRNAVISDEDGKSIFI AERNAMHALNGDRVQARLFAKRQGGDLEGEVINIIERSKHTFVGRLEFKKDWAIFVTEDR TLSTDILIPLSELHGAQRDSKVEVAITDWPSSDKIPTGRVLKVLGKAGDNDTEMRAILTE YNIDYDYPQAAIDEAERLSGEITQEQLAQREDFREVPTLTIDPADAKDFDDALSYRDLGD GRHEVGVHIADVSYFVTEGSKIDEEAYARGTSVYLVDRTIPMLPEVLCNNLCSLRPNEDK YAYSCILTLDNAAHVQQYRICRTVIRSDQRMTYEEAQDVIEGRSDTQQAIIQPLFELSQQ LRKRRFDDGAIKFQSQEVRFTLDPKGRPTGVEEVVDNESHHLIEEFMLLANRTVAEDIGQ VRAKGKKAKNFVYRVHAQPSEEKLMALASFAGKFGYKVNLSGENRQVSRSFNKLLDSVQG KREENLIETLAIRSMTRAEYSPDNIGHYGLSFAFYTHFTSPIRRYPDLMVHRLLTRYYAG GRSVTKGKLEEQCQHCSEQEQIATQAERDSVKYKQVEYMKARMGQVFDGVISGVAEWGLY VELKGSHCEGLIPIRKLEDDYFEYDEKNYRLRGRRTGKRYNLGDPITVRVARADLEQRQL DFDLV >gi|228307264|gb|ACLR01000182.1| GENE 76 88211 - 89155 885 314 aa, chain - ## HITS:1 COG:TM1717 KEGG:ns NR:ns ## COG: TM1717 COG1162 # Protein_GI_number: 15644464 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Thermotoga maritima # 2 304 6 288 295 174 34.0 2e-43 MRGRVIKVIGNNCAVHVPEEERVYSCLIKGRVRIQGIRSTNPVVVGDWVHFTPDPQQEVT YIESLEPRRNYIIRRATNLSKESHILAANIDLALLMVTIARPRTSYTFIDRFLATAEAYR IPTEILINKVDDLKPDEEEVMRELTEIYTPLGYPCHPISALQHQGTDALLSLLEGKCTLI AGHSGTGKSTLLNSLIPDLGLATQAISSLYETGQHTTTYSEMYQLPSPHSGWIIDTPGIK AFGTLEMSEEDTSHFFREFFAYSSDCRFANCTHLHEPGCAVLKALEEGRIAPSRYKSYLS ILQDEHSGPYRPEQ >gi|228307264|gb|ACLR01000182.1| GENE 77 89317 - 89877 894 186 aa, chain - ## HITS:1 COG:BH2424 KEGG:ns NR:ns ## COG: BH2424 COG0233 # Protein_GI_number: 15614987 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Bacillus halodurans # 3 186 2 185 185 160 53.0 1e-39 MSTSQFIKPAEQSMLKAIEFLQDKLDRIRAGKANPVLLDDITVEAYGAPMPLNQVATVTV PDARTLAITPWDKKLIKDIEKGILDSSLGITPTNNGEMIRITMPPLTEERRKELVKQSKA ESEEAKISIRNARRDAIDAAKKAVKAEDLPEDTIKQTENDAQKLHDKYIARVEEALAAKE KEIMTI >gi|228307264|gb|ACLR01000182.1| GENE 78 89909 - 90634 939 241 aa, chain - ## HITS:1 COG:FN1622 KEGG:ns NR:ns ## COG: FN1622 COG0528 # Protein_GI_number: 19704943 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Fusobacterium nucleatum # 4 240 6 236 239 224 50.0 8e-59 MAQYKRVLLKLSGESLAAGSKQGIDTTRLHDYASQIIEISDMGVEVAIVVGGGNIFRGMA GSAEGLDRVSGDRMGMLATVINALAISAAINAQCPAIQGTPRAVVMTSTPMESYARYYDA LTARQLLAQGHIVFIAGGTGNPFFTTDSASALRGIELQADIMLKGTRVDGIYTADPERDP TAIKLSRLTYQEVYDRGLRIMDLTAMTLCQENHLPIIVFDMDTTGNLARVMRGEEIGSIV S >gi|228307264|gb|ACLR01000182.1| GENE 79 90987 - 92918 1738 643 aa, chain - ## HITS:1 COG:no KEGG:Ccel_2338 NR:ns ## KEGG: Ccel_2338 # Name: not_defined # Def: hypothetical protein # Organism: C.cellulolyticum # Pathway: not_defined # 344 593 1235 1474 1977 66 27.0 3e-09 MNQRIKLFLASLAILLIGASCQRNDQLDSNDPGKVVIKLSLPEDMQALRASANSSSAKGG ITNVDMSKYDIRYKLAVYNASGESVIAPLVKTVDSYQEITYEIRLTPNRKYKFVVWADFV KQGETADLHYNTADFTNITCIDTPDKQLNDESRDAYWIAKEINVGTEAINETLVLRRPFS KIRVVTTDWGLVPADKPDYFSIQYYGADCKRFNSMNLLTGVSTGTPLTAKDDAGIITYDV NINKDQKDYMLGYDSDDHNRTMTVDYLMTDQSEQTPLHVVFTAKKGGKDGELISTYDFAV NVPIQRNYLTTLMGNLLTTATSIKVLIEENFIEEYNNHKPWFAPQGVTPKKPAITTSVEG GKTITTYHITNREEMMWVSDNPGELGANKVFKLESDIDMNGIDWYPIGPRAGAFGGPCGT FDGNGHTLRNFSVQKFLYKTSGFFKREQQTGVFGVWYGDIKNLTFENITINGLEGVKVEP GKKHSESAYFAGCVGYFCGNLENVHAKNVFIKGANSIFKTQNVGGLVGYTNPDKPFVFKK CSVTNITIQAKGTQIGGMVGSLNKNHTLIECTANYVSLRVNGSSTTNIAGLVGDIADATG VKFEKCKVSNIEFLKYDGTKNSGYAPTHPLYGTSRKGTPTITD >gi|228307264|gb|ACLR01000182.1| GENE 80 93009 - 94070 978 353 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471000|ref|ZP_04055845.1| ## NR: gi|228471000|ref|ZP_04055845.1| hypothetical protein PORUE0001_0386 [Porphyromonas uenonis 60-3] # 1 353 1 353 353 700 100.0 0 MKYRLSIAIVIVLSILSFISCDRTIHEYPTPSKSLVILEFNADRTPPPYYKKVVFDEKYN SKVIKLNETPSLPYELGDGYQMRITAEIYDEAGHVVERRVVTQPHNALPPQDTIHVYLPQ GKYKVAAFADYIKANEIKDWHYLTSDLTHIGTDLSTYPQNAHLRSCAVGTEDFIIDYTLT PEGYPASAADAHKVIRDRKIPVHMVRPNARYWLRAIDYGDYLLAGSNIEDITVKIIYTQF AAVGYNVPERRPNKFGVNYSVNVKPDIYVSSDHKTVSLALDYIFTSWSEENVVVADFHIY DHGKEISHINGVHIPLLRNHETLLEGYFLTKSFGKDDGIQIDEDFDGEFIIKI >gi|228307264|gb|ACLR01000182.1| GENE 81 94081 - 95346 804 421 aa, chain - ## HITS:1 COG:no KEGG:BT_1451 NR:ns ## KEGG: BT_1451 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 253 414 34 192 195 104 40.0 7e-21 MRRFILTIISTLALAVSIYAQDDKLNPIVGHMVYPKHVVFLPDNKPDSTIAYSETGLVPI IFDIDKHTYIPSPELDSVAALVNQVLQDKRVDFQYLWIGGSASPEGPVAHNYDLGFWRSE ILKNFILKNTSVDPALVRTQNLAEDWEGFRRALIKDKDYPYRDRLLEIIDNTPDWKLRKT KIRAIDQGKTWHNLIYGLFTPFRNARMVIVCKAYNVELPKIPPMPPTLLPSTEVCMLPKI EASFLPVAETRFFALKNNLLFDGILVANLGVEVELWRKTSLDIPFVYSPYDIRVPDRKIR LLGSQPEFRYWLGRKAGEGHFVGLHGALLGFNIALNDKGRYQDPNHALWNAGVGYGYSWN FGKDKRWALEANIGVGYADYIYDSYRNWYNGAKFNSNTHESYWGVTRAGLTIMYKWYTPR K >gi|228307264|gb|ACLR01000182.1| GENE 82 95793 - 95999 135 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSSTALSRKLSNSSVEIAESPRRNRKIHRNFDFFLPKFHFILPNFYFPVPWRIFVCSLE ILDFFGRD >gi|228307264|gb|ACLR01000182.1| GENE 83 96178 - 97431 1625 417 aa, chain - ## HITS:1 COG:no KEGG:BF0627 NR:ns ## KEGG: BF0627 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 10 414 4 403 407 253 36.0 1e-65 MNRFNKLTNRLTLIAALLLGLALTSCDKEPKPTPQTGSERILFSTSIMNADGASGNGYLQ AIGSIEAKKYDNSRGVPVGFGTEPIYCGDHLYVLPDYMGMGKAELVCYTVSKELQLTKRG AMELPGGAAACNVVEVSPEKAYISFQNIGQVWAFNPKTMTKTAVIDLNQYKHDDTNVMPG AMAVRDGKLYVGLCQMDPKWMPLHKEVELALIDIATDKVEKKISSTTSGLSVATRPIVAN SIFLDDKGDLYILCMGSFGFNPEFPSGIVRIKKGETEIDPSWSMKLSEINIEVKGVLPQT TKLPANFFVSMRYISGSKVVAIMGIYALDPENKNPYTALYCIPTVIDLEQRTIQQIEGIP VSNPHACALGWYNDRIMIGSAGKERSGFYSYDPKTGAVSDGPVFEIEGNPVSFYQMK >gi|228307264|gb|ACLR01000182.1| GENE 84 97481 - 97897 565 138 aa, chain - ## HITS:1 COG:no KEGG:BF0628 NR:ns ## KEGG: BF0628 # Name: not_defined # Def: putative TonB-linked outer membrane receptor # Organism: B.fragilis # Pathway: not_defined # 5 138 646 779 779 169 55.0 4e-41 MVMQTYQDLRDTRRLIPSTNVANPTYLKRMPNIPYFLANAGLELHKENLFGGEGYNSRLM LDASYVHQYYYDFEVSQYQERKIPTALRLDLGLEQSLRNNQWTITFKVKNLTNQRQMSEL NRPLPGINFSVKLRYLFR >gi|228307264|gb|ACLR01000182.1| GENE 85 97830 - 98291 373 153 aa, chain - ## HITS:1 COG:no KEGG:Ctha_0985 NR:ns ## KEGG: Ctha_0985 # Name: not_defined # Def: TonB-dependent receptor plug # Organism: C.thalassium # Pathway: not_defined # 8 148 517 654 775 124 46.0 1e-27 METNRHFFGWSEAIRYRFTPDFLIKASYADEVRIPTSEELLGNGYSISASTDLRPEHSRG GNVGLVYRNFSPTSGQLIEAEVNAFGSYVTDMIRFMPGLIPSMSCYQNFGSIRTWGVEGE VKWDALPWLYLYGNANLPRPQRHAPTDPLDECR >gi|228307264|gb|ACLR01000182.1| GENE 86 98306 - 98599 433 97 aa, chain - ## HITS:1 COG:no KEGG:Ctha_0985 NR:ns ## KEGG: Ctha_0985 # Name: not_defined # Def: TonB-dependent receptor plug # Organism: C.thalassium # Pathway: not_defined # 4 86 410 492 775 63 37.0 2e-09 MGVNRTINLVDKVNLNYTLDRHQAFNLNLCHTYAYRNPTDTLMDRALGYKANFKSRMNSL TAGASYDLTLFEDKLQNAFTAKYYNYRSRSKVIGTSV >gi|228307264|gb|ACLR01000182.1| GENE 87 98451 - 99818 1462 455 aa, chain - ## HITS:1 COG:PA1271 KEGG:ns NR:ns ## COG: PA1271 COG4206 # Protein_GI_number: 15596468 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Pseudomonas aeruginosa # 100 239 23 168 616 67 29.0 7e-11 MRRYRLLLLITLLSLSAAVAQEYHYRGSVLDDATGEPLIGANVYAEPKGAGAVTDAEGLW SFTSKQRVKRLVVSYVGYKSKRITSPRQDGKPISVRLEVDETTLGSVVVVAKRQERALRE SAMPISVISMRQLQGTASSIDEVLSRTTGVTLRNTGGLGSASRISLRGLEGKRMGIYIDE TPFGEMSDFISINDIPTDMIERVEVYKGIVPYKFGGSAMGGAVNVVLKEYPPKYFDASYE VGSYNSHMLSTVFKRTLEDAGVQFGVGGTLAYSDNNYKMELPHYKDRIVRRDHDQFRKAI LGGSLKATKWWFDEIKLECAGTYIRREIQGFEWDVREAFTLSKGLALESTFKRADFFLPG LDLDASVGVVFGQNGLTDKAAHRYDWDGKEYPAGSSYGGELSSIPTDGGQSNDQLGGQGQ PKLYARPPSSFQSQPVPHLRLSQSDGHAYGSSFGL >gi|228307264|gb|ACLR01000182.1| GENE 88 99911 - 100531 653 206 aa, chain - ## HITS:1 COG:no KEGG:PGN_0945 NR:ns ## KEGG: PGN_0945 # Name: not_defined # Def: putative TetR family transcriptional regulator # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 20 204 31 213 215 79 26.0 9e-14 MNSPTLDIQQRIEEGALRLFSRHGYIGTSMRMVAKEAYASLGSIYYYYEDKEALFRSLVE PAIKGLEAFYALPPEDQDMEMDMLDPMERKRRGYSKAPFYQYIIDHAEALRLVFFASAGS YLDHYEARLNQLSNESTIRYFERYRELHPDWKAEVDPSFIDIYSAFITATIKTILQRSDT SPEELARFCRCHEKFSFGGWRALLGG >gi|228307264|gb|ACLR01000182.1| GENE 89 100543 - 101208 765 221 aa, chain - ## HITS:1 COG:lin2045 KEGG:ns NR:ns ## COG: lin2045 COG2226 # Protein_GI_number: 16801111 # Func_class: H Coenzyme transport and metabolism # Function: Methylase involved in ubiquinone/menaquinone biosynthesis # Organism: Listeria innocua # 58 155 51 149 237 80 41.0 2e-15 MAKAQHNAYTKQMHRYDALMTGRSWWGHLFMNGLWQVNQLQMAAEVLAMIPDDFAGRLLD VPVGTAVFTCDKYKQLAKAQITALDYSEKMLKMAAHRFEVEGVTNVSLVQGDVGAMPFAD GEFDYLLTMSGLQAFPDKEQALREMHRVLKPGGRLCGCFYVRGEHRVGDWIARHILERKG YFCPPHYTAAEAVAILRNLFGERISVRQYHAMLICSVIKDR >gi|228307264|gb|ACLR01000182.1| GENE 90 101333 - 101635 304 100 aa, chain - ## HITS:1 COG:no KEGG:VFMJ11_A1052 NR:ns ## KEGG: VFMJ11_A1052 # Name: not_defined # Def: hypothetical protein # Organism: V.fischeri_MJ11 # Pathway: not_defined # 4 99 9 104 129 110 51.0 1e-23 MGQGRIAEEQQVIRQMIQLYCRKKEENETLCDSCRELLEYATRRLDRCRYGVAKPTCRKC PIHCYRPDMKARIQAVMRWAGPRMLSHHPLAALKHLLREL >gi|228307264|gb|ACLR01000182.1| GENE 91 101637 - 103049 1385 470 aa, chain - ## HITS:1 COG:TM0267 KEGG:ns NR:ns ## COG: TM0267 COG0486 # Protein_GI_number: 15643037 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Thermotoga maritima # 7 470 2 450 450 252 36.0 1e-66 MIHDLSETICAPATALGGGLAVIRISGSLVPQIAETLLGKRLAPREATTAGLRIDGQLID LVVATYFAAPHSYTGEEVVELSCHASPFIVRSILEWIAHQKGCRMADPGEFTRRALAHGK LDLAEAEAVADLIAATTATQHKMAMEQHTGRLSHLLNELRATLLRFAGLLELELDFSEED VAFADRTTLAETLATIQHQLRLLTQSFSTGQELQQGIPTAIIGAPNVGKSSLLNALLQHE RAIVSDIPGTTRDTVEGRLTIRGTLFRLIDTAGLRQTTDLVEQLGIERSYQQISSARLIL WVIAPPLPTWDELETQLGELLPLTSPDSTLILLLNKRDLLTEREVTDWLSHCSDQLQRIT DKRHTTPPLAISARAAQGIEALEELMVTNTHTLHSNEETVMLYNLRHYEALTKASHALEL VSEGLHNGLTSDLITPYLREAIEEIGLVTGASITSDEVLGYIFSHFCIGK >gi|228307264|gb|ACLR01000182.1| GENE 92 103046 - 103513 243 155 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 4 153 122 268 278 98 37 2e-19 MPTAYIALGSNLDEPRHQLLEAIRRMRLRGLQIHSIAPFVETRPVGFASEHLFLNSVVAV HTTATPAELLAQLQEIEREMGRLHKSHDGIYSDRVIDLDILLYDQRVVTTPELTIPHPRM CERAFVLQPLSYIAPELTIPTTGATVAQLLAALPS >gi|228307264|gb|ACLR01000182.1| GENE 93 103548 - 104621 1298 357 aa, chain - ## HITS:1 COG:SA1466 KEGG:ns NR:ns ## COG: SA1466 COG0809 # Protein_GI_number: 15927220 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Staphylococcus aureus N315 # 7 356 3 341 341 268 40.0 1e-71 MRHKAKLSHFDYKLPEELIAQYPTTFRDQSRMMVLHRTDGSIEHKNFVDILDYFGEKDTF VFNDTKVFPARLYGLKEKNQAKIEVFLLRELNESLRLWDVLVDPARKIRIGNKLEFGEEG GAPVLVAEVIDNTISRGRILRFLYDGSHEDFLKDLYSLGEAPLPQEIKRPAEPSDLERYQ SVFAKHIGAVCAPAASLHFSDIILHKLRLQGCNLAFLTLHHNLSSYQEIEVEAISKYKVE NEEMYIPLECCDIVNQARDDNAQIVAVGATVMRALETGVSTDGYLKEFSGWTNEFIYPPY HIHLPTAMLTNFNAPKSINLMCAATMGGEKNVMNAMNVAVKEKYRFGCYGDALLIMD >gi|228307264|gb|ACLR01000182.1| GENE 94 104663 - 105427 775 254 aa, chain - ## HITS:1 COG:MT2862.1 KEGG:ns NR:ns ## COG: MT2862.1 COG0130 # Protein_GI_number: 15842331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Mycobacterium tuberculosis CDC1551 # 27 252 7 230 298 163 44.0 2e-40 MNQEVSSKLYTPADLQARRPLTLRAGAIIPLDKPLGWTSFDVVNKLRIMVRQVTGIKRIK VGHAGTLDPQATGVLVLCTGRATKLIEQLMDHDKEYCATLQLGATTPSFDSEHEIDATYP YEHITEEMVRSTLHQFTGEIDQRPPSFSAVKVGGIRAYDLARQGQEVELAHKHVTIHELE LVSFTPPSLQLRIVCSRGTYIRSLARDLGTALDSGAYLTQLVRTRSGEISQANCFSLDQL DELLALTPEEEELS >gi|228307264|gb|ACLR01000182.1| GENE 95 105432 - 106283 1164 283 aa, chain - ## HITS:1 COG:aq_2195 KEGG:ns NR:ns ## COG: aq_2195 COG1968 # Protein_GI_number: 15607126 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Aquifex aeolicus # 1 275 1 255 256 171 39.0 2e-42 MTILESIILAIVEGLTEFLPVSSTGHMILTQGALGMESTPFLRAFTVMIQFGAILSVVVL YYKRFFTFRVEEGARQLPQGWQWVGRFSFYIKLLVGLIPAAVIGLLLEKQIDQLLDNVYV VATTLFLGGIFMLFIDRIWPAQSQTAERPSYRNAFVIGCFQTIAMIPGVSRSMATIVGGL QQRLTRRAATEFSFFLAVPTMLGATLLKGYKLLSDPVSSQMLQENWMALLVGNVVAFVVA LLAIKFFINYVTRYGFKLFGYYRIVVGLLVLILLLCGVPLAMH >gi|228307264|gb|ACLR01000182.1| GENE 96 106308 - 106568 466 86 aa, chain - ## HITS:1 COG:no KEGG:PG1537 NR:ns ## KEGG: PG1537 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 68 25 92 99 83 57.0 3e-15 MVFGKKNYILLAISVGIIILGLLLMSGGGSADSTEFTAEIFSTRRIVVAPIVTLVGFLLI IYAIMAKPKDPNKSNGKDSDAKPQSK >gi|228307264|gb|ACLR01000182.1| GENE 97 106600 - 107370 931 256 aa, chain - ## HITS:1 COG:NMA0255 KEGG:ns NR:ns ## COG: NMA0255 COG2177 # Protein_GI_number: 15793273 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Neisseria meningitidis Z2491 # 10 239 59 295 305 59 19.0 5e-09 MGKCHLEQSVREEMTFTVLLDPEMTAQDSINLMQQVQQAPYIKDVTYITPDEAARQLEEE IGEDPVAVLGFNPLQPSLEVHLKSQYAVADSMAQIESDFASWGNVQTMSYRGDMLQMIDE NMQHLSTILLIVSLILLIIAIIQVNSMTHIMIYSRRFLIRSMTLLGAKPCLIRKPFTTYS IFNGLWGGLLATCMIIGLLCYMTQRNPQLLQSYLSYSEVAIILGGIICLGILLSWITASI STSRYIRMDGGRIVMA >gi|228307264|gb|ACLR01000182.1| GENE 98 108336 - 109505 1397 389 aa, chain - ## HITS:1 COG:BS_ykvD KEGG:ns NR:ns ## COG: BS_ykvD COG0642 # Protein_GI_number: 16078430 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 157 385 263 503 506 82 30.0 2e-15 MSSPRRLLGSLPTNILLVVLALVVALLPLILSEPLVRRMADEERLKMQTWAEATECIASQ SDEQLNALALQILESNTTIPLILTDSLGNILGYKNIDPEAVARDSTYLARRLTAFRSGYA PIEIDLGTAGRQYLYYSDSSNLKRLLRFPYLQTGIFILYIIILVLTIRSLLHWEQDRIWV GLSKETAHQLGTPISSLMAWTELLKSYDLPPEIIESIGQDVNRLELIAHRFQKVGSLPEL SPIELNGLIATSVQYLSRRISRQVEILFEPAAEELYCLITPDLMSWVVENIVKNGVDAMD GKGTITITTEAHGKNAYLEITDTGRGMTRATQRMIFKPGFTTKERGWGLGLSLARRIIRH YFRGRIYVKRSELQVGTTFRITLPLQQLP >gi|228307264|gb|ACLR01000182.1| GENE 99 109613 - 110230 693 205 aa, chain + ## HITS:1 COG:no KEGG:PRU_0296 NR:ns ## KEGG: PRU_0296 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: P.ruminicola # Pathway: not_defined # 3 178 2 178 197 116 37.0 6e-25 MTSTQHMRQRIVQMAHTLFVQQGVEETTMVAIAEAVGCSRRTVYTYYKDKQALLMAVIER EISLMSQSLSEVLARPGDAITKLMVLLDNHLQLIQKTVQRQGERNASFFSDTFNVERLRL KYDQSEYDMLKRILQEGHDRGELLVPDINSTAYLLLKSFKSLEAPYINRYHHEYGKEDYL RIIAAMKQLLRQGLTNHTNTKPITQ >gi|228307264|gb|ACLR01000182.1| GENE 100 110236 - 110985 229 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 4 249 1 242 242 92 29 8e-18 MKLLQDKVALITGAARGIGKAIATKYAEAGCHVAISDLKVADEAKDYYAQLAKECGVTIR TYESNAADFEAAHQLVDQIVADFGKLDVLVNNAGITRDGLLLRMSEQQWDAVINVNLKSA FNMIHAAAPVMMKQRQGSIINMASVVGVSGNAGQVNYSASKAGMIALAKSVAKELGSRGI RANSIAPGFIESDMTAVLSEEVRKEWAKQIPLRRGGKPEDVANVALFLASDLSSYMTGQV LSCCGGMNM >gi|228307264|gb|ACLR01000182.1| GENE 101 111005 - 111691 597 228 aa, chain + ## HITS:1 COG:BH2542 KEGG:ns NR:ns ## COG: BH2542 COG0564 # Protein_GI_number: 15615105 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Bacillus halodurans # 4 217 81 293 305 114 33.0 1e-25 MPDLQILYEDNHLLIVNKPAGMLVQGDSTGDTPLSELVERYLIDKYDKPGRAFVGVTHRI DRPTSGAVLFAKTSKALARLNAMFQRREIHKVYHAVVCGAFPQKAGEAKNLLYRNRKQNK SYVVTEPHAEAKRAWLTYERLSVGDRYSLLAVTLHTGRHHQIRTQLSHMGYPIKGDLKYG APRSNKDGGISLHARILSFEHPVTHEHVEVVAPYPEDDAIWSLLSHTK >gi|228307264|gb|ACLR01000182.1| GENE 102 111763 - 112245 292 160 aa, chain + ## HITS:1 COG:no KEGG:BF3004 NR:ns ## KEGG: BF3004 # Name: not_defined # Def: tyrosine type site-specific recombinase # Organism: B.fragilis # Pathway: not_defined # 17 156 267 400 403 137 52.0 2e-31 MFASVPPLISIPPEEETNSEGKRYIRKARQKTEVEGLIPLHPIAEQILALYTKAKSRGDY KIFPDTMSDWKLLSRLKAVGLACGIRTPLTWHCARYTFGTLTLEAGVPIESIAKMMGHSS IASTQIYAQVTDQKIARDMDRLTKNSCQRLPLSHKKDRHR >gi|228307264|gb|ACLR01000182.1| GENE 103 112337 - 113044 141 235 aa, chain - ## HITS:1 COG:no KEGG:Coch_1711 NR:ns ## KEGG: Coch_1711 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 1 235 4 238 240 188 42.0 2e-46 MIWKIIVAIVAVLIIAFIVFEIVSRIFAKKNLKAFLASHPQTPLTEEKKRLLVFGAILSC YRNEDILSIITDDNMNVYKTGLQKQWSINGREDALETLNALLNLEQSTELDEVLAQGGSS EELIELQTLIADGLKTDLAQVRTTTSTYAWDVCRLVSLAKWCYWLQYISEAEMWKYLNEG AVKASSLGKDWNDYTVSFLMGRAIHGFGTEDIIDDCKALYHRESDTDVYSKYSFK >gi|228307264|gb|ACLR01000182.1| GENE 104 113092 - 113484 98 130 aa, chain - ## HITS:1 COG:no KEGG:BT_3651 NR:ns ## KEGG: BT_3651 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 122 175 296 301 131 56.0 7e-30 MLLPDHLEDKLGYFALTIQKLRERHKAKFVYLEDPEFERLFTVYADDEVEARMILTPAMM KKLTALRCSFTHDLMLSFSGDTFYYASNMPKGFLRLSGKTSLNEDLLLEIYQEIGFCLSV EEMMGKHVDK >gi|228307264|gb|ACLR01000182.1| GENE 105 114139 - 114708 82 189 aa, chain - ## HITS:1 COG:SP1284 KEGG:ns NR:ns ## COG: SP1284 COG1704 # Protein_GI_number: 15901144 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Streptococcus pneumoniae TIGR4 # 10 178 4 173 186 112 35.0 4e-25 MTASIIAGSVLIAIAVLILIWGIITSNNLIAKKNRVEQCRSGICVALKQRNDLIPNLVAS LKAYMGHENEILTRIAELRSRADGAPEAEQIKDGTEISTLLKQVKAVVESNPDLKANEQF VYLQYQITDMENELQAIRRTYNATVTDYNNAVEMFPSSYIASRKHLGKEALIRIPESELG DIHIKEIFG >gi|228307264|gb|ACLR01000182.1| GENE 106 114724 - 115455 661 243 aa, chain - ## HITS:1 COG:FN0024 KEGG:ns NR:ns ## COG: FN0024 COG2849 # Protein_GI_number: 19703376 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 18 234 6 214 228 60 30.0 2e-09 MNRYILFFFSLLLSLSVSAQKVILSDELLPLSGENNTTVYFEKDSRKPLQGEWRIKRGLD EETISFSNGLMDGKYHRYRDGVLRETGAYDQGKRNGVFTEYYQDGKTVSKITPMKKGKID GCVKTYFKDGRLDLEKEYQESVENGFEKRYDSQNGAQILETRWVNGKKDGVEWKLTKQGD GVESKVTRTYRMGVLHGAYKEEVLRNGNPILVVEGQYADGERSGVWKEYDATMKTTRVLR NNH >gi|228307264|gb|ACLR01000182.1| GENE 107 115467 - 115763 131 98 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPNYLIGYFCFIACLINVKLCASLPLSFVALSFSALEHIRKYPASFIKRQEHTQMLNGKD RVFCDTLTKTMDKNKGRPTSLPMKVSVDIVLTQYSVYV >gi|228307264|gb|ACLR01000182.1| GENE 108 115707 - 116009 279 100 aa, chain - ## HITS:1 COG:no KEGG:BF0655 NR:ns ## KEGG: BF0655 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 4 93 2 91 97 89 44.0 5e-17 MEYETINKETPEMKQLISGIKGLTNRVRNIAQTHRPLFEGEIYLTGREVCERLFLSPRTL QDYRDKGIIPYTQIAGKILYRLSDINRILSENYVNRNLHR >gi|228307264|gb|ACLR01000182.1| GENE 109 116386 - 116595 87 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELVSTSTSALWVGALFEVRSSTALSRKSHDSSVELFEYPVRNGKILRNFEIFLPKFHFI LPNFYFPVP >gi|228307264|gb|ACLR01000182.1| GENE 110 116716 - 117141 598 141 aa, chain - ## HITS:1 COG:no KEGG:BDI_0258 NR:ns ## KEGG: BDI_0258 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 137 1 139 146 103 41.0 2e-21 MRLTDNWFNGLAESEAGQTAHLHVRDELEEFRTTGKYRFVIEIAYPFDGEGIEPSDTDSA QIEAVDELLQTAMERDKMAILAASILEPVRKVWLYVSRTYDPFFDRLEEVLAELPLLPLQ FEVVQDPDWSYYQELLDKLQP >gi|228307264|gb|ACLR01000182.1| GENE 111 117148 - 117786 782 212 aa, chain - ## HITS:1 COG:no KEGG:EUBREC_1239 NR:ns ## KEGG: EUBREC_1239 # Name: not_defined # Def: cytidylate kinase # Organism: E.rectale # Pathway: not_defined # 1 196 1 190 194 150 40.0 3e-35 MAYRIITISRQYGCGARTIGRQLSEQLGLTYYDKELIRMIAEESGYAADYVEEQSEYAST SGLDFMPMSHGALFSVPMTGLVETPSVTRYLNDFILKIAEEHPCVIIGRSADYILRDRDD VLNVFLYANVEARVKTLLQRGDEATEDEARKRIEQSDRARRKNYKQLTNREWGESTNYHL CLNTGAFGAPCCTDIIAHAYQLPCGGVTIGKK >gi|228307264|gb|ACLR01000182.1| GENE 112 117833 - 118312 456 159 aa, chain - ## HITS:1 COG:lin1500 KEGG:ns NR:ns ## COG: lin1500 COG0295 # Protein_GI_number: 16800568 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Listeria innocua # 29 157 10 130 131 88 41.0 6e-18 MSDKELLIPYTRLPRSEWPEVYGRLEEAAVEATRRSYAPYSHFHVGAAALLEDGEIVLGC NQENASFSPTLCAERTALYAIGAHHPGAVVERLMIVAETEGKRVEAISPCGVCRQVMMET AKRQGKPFEVILCGSDEAIVISDCRLLLPFAFDGSDIPS >gi|228307264|gb|ACLR01000182.1| GENE 113 118408 - 119250 879 280 aa, chain - ## HITS:1 COG:SA1073 KEGG:ns NR:ns ## COG: SA1073 COG0331 # Protein_GI_number: 15926813 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Staphylococcus aureus N315 # 1 280 18 298 308 220 40.0 3e-57 MGQEIYTKSEAVRKLFAEANEVLGFDLTKTMFEGTEEDLKQTKVTQPAVFLHSVAMTVAL GDAFAPDMVAGHSLGEFSALVASRALPFADALRLVSERALAMQAACEAHPSTMAAIIGLP DEKIEEICRGISDQVVVPANYNCSGQVVISGTMEGIAEACEQLKAAGAKRALPLKVGGAF HSPLMQPAKERLQRAIEATTFATPICPIYQNVDARPHTDVEEIKANLIAQLTAPVRWTKS VEAMVADGATHFVELGPGKVLAGLIGRIASGVTCESLATI >gi|228307264|gb|ACLR01000182.1| GENE 114 119318 - 120772 1788 484 aa, chain - ## HITS:1 COG:VC2279 KEGG:ns NR:ns ## COG: VC2279 COG2195 # Protein_GI_number: 15642277 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Vibrio cholerae # 4 483 49 527 534 424 44.0 1e-118 MMNKADYQKLAPSTLWGYFYDLTQIPRPTGHCQAVREYVVAEGKRLGLETHVDEVGNVLI RKPATPGLVDRPVATLQGHLDMVPQKNSDKVHNFETDPIQTMQEGDWITADGTTLGADNG MGVAFSLAILADDTLKHGPLEALFTIDEEVGMDGANGLKPGFSKGDILLNIDSEVEGDLF VGCAGGVDVNVSLEYQDNHEPDADEIGVRLTIKGLKGGHSGVDIHLGRANANKLMARLLK EAVSQCGALVAEIDGGNMRNAIPREAVALLSIKEDDTEALWELVSDYEELFNKEFAGIEN HITVSLERCDRPKTILPDEIQDALIHALNACQNGVISMLSEFPDTVEASSNLAQVQAGEG HISVRFLVRSSSDSRKMWVASSIESCFLLMDARVEFDASYTGWQPNAESHIMQVMCQAAK EIYGKEPAVKVMHAGLECGIIQGVMPDMDMISFGPEIQHPHSPDERVSSPSVERSYRMLV RALD >gi|228307264|gb|ACLR01000182.1| GENE 115 120953 - 121909 1145 318 aa, chain - ## HITS:1 COG:no KEGG:PG1734 NR:ns ## KEGG: PG1734 # Name: not_defined # Def: transporter, putative # Organism: P.gingivalis # Pathway: not_defined # 15 315 11 309 313 234 46.0 3e-60 MTRHYNIADLRGRFMRRLKDYGLPLSILIGIVGYRPLSTLSPAIPYMLMLMLFFSFLKLT PRDLRIRPVHFLLQFIQIMLAVGGYLLVRYSGISESTLLAEGLMICFFCPAASASPVVIG FLGGNVALGTTYVLLTSVGVIALAPLLLGFFGSGAMDYGATFVQIFYRVLPVITLPLLLA WAVRYGAKPAYRVLSKIPSASFWVWLLSLSLIMANTVYFIAEEPREMIPTMILLGVMGLI ACIVQFVLGKWLSKRILGESITLGQSLGQKNSTIAIWLAQSYLNPLSSVAMAAYSIWQNL LNAYQIHQATKRSGKKQS >gi|228307264|gb|ACLR01000182.1| GENE 116 121906 - 122862 680 318 aa, chain - ## HITS:1 COG:PA4950 KEGG:ns NR:ns ## COG: PA4950 COG1600 # Protein_GI_number: 15600143 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Pseudomonas aeruginosa # 42 318 49 330 361 182 36.0 7e-46 MTQRSLSPTELIVRYAHDELHLSAVGLAAAGAVPPDVWQAYQQTITGDAYAGLDYLQRYD DVRSDPRKLLPDAQSIIVVAQSYYPPVKQPLEAPQVAYYAYGRDYHKVVRKKLERLLSFI QSEVDQSATGRVCCDTAPLLERYWIMQSGLAYQGRSKMMIIPKLGTFFIYGFLVVSLPLE YGTVIDRNYCGRCRRCIDHCPGGALQADGTFRADRCLSYLTIEHRGAWTEGVAERLGNRL FGCDVCQTVCPHNAHCTPHDEPDFMIRPAIAQLTYEQLANFTPELYETLTIGSSMRRCAY EDFLRNAEAVLTNHTTTL >gi|228307264|gb|ACLR01000182.1| GENE 117 122859 - 123998 1005 379 aa, chain - ## HITS:1 COG:RSc1728 KEGG:ns NR:ns ## COG: RSc1728 COG0535 # Protein_GI_number: 17546447 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Ralstonia solanacearum # 28 373 10 368 491 116 29.0 7e-26 MKLSKHKSVGQTLLRPAFKQRIALDLHRVLQADNVRRHPMTTLFWECTLRCNLHCGHCGS DCRVESGVDELSVADFIHIIDGLTPHVDPNKLLVIFTGGEALVRQDIEEAGLALYRRGYP WGIVTNGMLLDEKRLESLRRAGLHTATVSLDGFAEAHNALRGHPLSYERAWRAIQLLTQA EDLVWDVVTCVNPMNFDSLPAFRQQLIDAGVKRWRLFSIFPVGRAAENKQLQLSDSQYYQ MMQFIIETNEAGEIEAQYGCEGYLGAFEGRTRKQFYQCRAGVNIASILCDGSISACPSIR FDHKQGNIHHDDLWQVWEERFESYRDRSWAKTGPCADCKSWKYCLGNGMHLRDDEGKLLV CHLQRLEAGAEALHASGGR >gi|228307264|gb|ACLR01000182.1| GENE 118 123765 - 124292 155 175 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDKVSDRQLIDPALHTAVAAAVPAVQIAAQRTLPEECRHRVPTHIVRLQDTMQVKSYPLL ECWTQERLPDGLMLAQFHQMRPRSLVHSGFSGSTICFGSNIVVGVPYITMPIPSGLGLGL ASVVVSGCSDLPPSLVLCVVRVLQLEKPKQPISASNVPAIRLEMIFESFLFIHYI >gi|228307264|gb|ACLR01000182.1| GENE 119 124323 - 124772 652 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470930|ref|ZP_04055775.1| ## NR: gi|228470930|ref|ZP_04055775.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 149 1 149 149 251 100.0 1e-65 MKRVYLSVRSLLSAGASLLLGWLGFASCDSIGMAEYGTPTVDYEFKVRVTDQDAKPVEGL QVNLPNGRGDKKKLTDAQGNVELEGSYTGFRGDHGVALEVKDIDGEKNGVVADKQVIVDI KESDFVSKGSGNWNNGKVKKDIEIQVERK >gi|228307264|gb|ACLR01000182.1| GENE 120 124843 - 125301 607 152 aa, chain - ## HITS:1 COG:no KEGG:PRU_2381 NR:ns ## KEGG: PRU_2381 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 19 152 16 160 160 62 29.0 7e-09 MKRVYLSVRSLLSAGAALLLGWLGFSGCSKTPDAGMAEYGTPTVDYEFKVRVTDQDAKPV EGLQVDLPSSYGDEKELTDAQGNAEIDGSYTGFHRDHQVVLEVKDIDGEKNGVVADKQVT VEVKESDFVSKGSKKWNNGKVKKAIEIQVERK >gi|228307264|gb|ACLR01000182.1| GENE 121 125313 - 125555 192 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MENFLGAFFYLPRSKRKILRNFDFFLPNFHFILPNFYFPVPWRIFVCSVEISDYLRGDRF WGRVKLWQIPFFVLHLPMYQ >gi|228307264|gb|ACLR01000182.1| GENE 122 125836 - 127311 1267 491 aa, chain + ## HITS:1 COG:no KEGG:BF2542 NR:ns ## KEGG: BF2542 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 486 7 490 490 286 34.0 1e-75 MRWLHKVLGTVCAPLFLLWLISGGVMIFCSFPRLGDKDLPLQDTLAASAALPSEATLQAK LQPGEELTALALTTHCGEPVWRVETSEGGYLWHADSLLTTATASVPEAWYEQYASRFSSA PIVAVDTIRHIDTWTPYPRVKKDLPLYRYRFDDPEGTYLYLSSQTGDAVQFCTRSERIGA SCGTIPHMFYYWWLRQNRTVWLWVISIFASLAVIAAFTGLYLGIRLYLRMWRRTKRLRSP YKRQKTLHWHLVGGVIFGLSLTLFALSGVMSLYDLPSWIVPQHETETKRKEAQQVEAPQL GRSDMYDYRLLLDLGGVQQITWRSYGGHPYYEVQRHGQLESWDALGEAPQPLHLTEEDIK AKLTPVLGTADMQIELMDHYDNYYASLNDKYELPIYRISAQDKESSRLYISPTTGETRYY SLNGRVKKWLYPFCHNLRIGFFAEHPTLRIICMLVLVLGGLVVSVSGVVLGFRYLSRVIR RAKSRRSKNKR >gi|228307264|gb|ACLR01000182.1| GENE 123 127347 - 128750 1679 467 aa, chain + ## HITS:1 COG:lin1162 KEGG:ns NR:ns ## COG: lin1162 COG1010 # Protein_GI_number: 16800231 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-3B methylase # Organism: Listeria innocua # 4 242 2 239 241 229 46.0 8e-60 MKKIYIAGIGPGSPEDITPAVHQALREADVVVGYAYYFQFIQEYLHEGAECIDTGMRQER ERARLAIERAEAGQTVCVISSGDAGIYGMAPLLYEMCDERGSDVELEVLPGISAFQKAAA LLGAPIGHDLCIISLSDLMTPWAIIERRAIAAAEADFVTALYNPKSIKRYWQLERVRELF LKHRSPDTPVGLVQQAGRPDQRVWTTTLRELDTQEVDMFTVLIIGNSQSFLSKGKIVTPR GYYRDKGSDEEKVGQRIMSESFRTILSLLKHPESYPLDHLWAMLHAVHTTADFEMEELLY SDPNAVSRIYQGYVDGKIRTIVTDVTMVASGIRKGALARYGIEVLCYLHDPRVAEMAERL DITRTQAGIRLAVEEHPDALYAFGNAPTALMELAHLIRQGKAHPAGIIAAPVGFVHVCES KHMVKPFHDIPKLIIEGRKGGSNLAATLVNATLSYGDAETLKPGRDL >gi|228307264|gb|ACLR01000182.1| GENE 124 128747 - 129940 1067 397 aa, chain + ## HITS:1 COG:STM2030 KEGG:ns NR:ns ## COG: STM2030 COG2242 # Protein_GI_number: 16765360 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-6B methylase 2 # Organism: Salmonella typhimurium LT2 # 222 388 3 166 192 99 37.0 9e-21 MKIILIGLSDDREQRWNPELLERLTGERTFSGGARHHDIVREILPSEYHWIDITPPIDDV IEQYKAYDTVVVFASCDPIFNGIGQRIMQLLPEAEIELHPYFHSLQLLAHAALQPYQDMH VVSLTGRPWQAFDAALISGERMIGILTDRKEHTPQRIAQRMLDYGYDNYRAIVGEHLGNR ERQQLYRLSIAEMAERTFAYPNNLILIQTKPLPRSFGIPDADFIPLNGRERMITKRAIRL ETLSQLDLHQAHVLWDIGSCTGSVSIEARLQQPSLQVVAFEIRPEGAELLDANARRHHTP GITFCGGDFLRADLDPLPQPDAVFIGGHGGHLQEIVEETWRRLALGGRIVFNSVSSESEE AFRRAIATVGGSIASTTRMQIDDYNPIAVLQATKSTH >gi|228307264|gb|ACLR01000182.1| GENE 125 129942 - 131777 1551 611 aa, chain + ## HITS:1 COG:MJ1578 KEGG:ns NR:ns ## COG: MJ1578 COG2875 # Protein_GI_number: 15669774 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-4 methylase # Organism: Methanococcus jannaschii # 368 611 9 254 259 230 45.0 5e-60 MNSQTRIAILAISPDGQAIALKIASELPDVKLYTTHQEKLSEAFTLLPSLAEGAKTLFDE SDVLLFVSAMGICVRTIAPLLRDKHNDPAVLCVDTTGRYVISVASGHIGGANEWTDRIAH ILGAEPVITTQSDRQGLWALDTLGAESGWSSETAGCSMNAAITTFVNKRPVALLLEMRSE GTAYLERTHPEHVDLYYHYEEIDQSRYDLLIAVSFRLLEGLTIPCLYFRPQLLHLGVGCR HQANPEGVVAHILSDIRAKGFAPSAIATINSIELKRGEPILNELSQHLGKPCHFYSSDEL ATIEVPNPSERVATATGSTSVSEASALAASQGGLLIIEKQKGCLTPQSDFTYSLAVAPEG LPHGHIEIVGAGPGDPELISVRGKHFLERADLILYAGSLVPIELTYYAKEGATVKSSADM NLEEQFALMKEFYDKHALIVRLHTGDPAIFGAIQEQMALFDEAGMSYHITPGISSFLAAA AELRSQFTIPERVQTIILTRGGGRTPMPEREQLHKLAASQSTMCIYLSATLAEEVQRELL VHYPPTTPVAVCYKLTWPEQRIYRGQLSELAQIVREHHLTLTTLMVIGDAIDNRAGLSKL YNDNFKHLFRR >gi|228307264|gb|ACLR01000182.1| GENE 126 131774 - 132484 633 236 aa, chain + ## HITS:1 COG:MTH1348 KEGG:ns NR:ns ## COG: MTH1348 COG2243 # Protein_GI_number: 15679347 # Func_class: H Coenzyme transport and metabolism # Function: Precorrin-2 methylase # Organism: Methanothermobacter thermautotrophicus # 10 189 8 191 232 72 30.0 5e-13 MKAPQPIAIVSLGAATPEDISIRAYGKLQKADEIYCLGEAAHRILAALPEGSALAQRCQI LEIPMSSDRTEAISYYEQLATRLMEQQGRGLACSVVTIGDAGTYATVQYLADRLRQAGAK IEIVPGIPYYIAAAAAFGEGLVRQDESLLVLSKVFSSSQLREELSKGVTVVVMKLSRCAD IVREVIAEDNYDFIYAEHLGNPDLELLTSDRDTFLSRQPIPYFSLIIIRPSRSISK >gi|228307264|gb|ACLR01000182.1| GENE 127 132690 - 134834 2138 714 aa, chain + ## HITS:1 COG:all3310 KEGG:ns NR:ns ## COG: all3310 COG1629 # Protein_GI_number: 17230802 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Nostoc sp. PCC 7120 # 53 568 96 587 698 85 22.0 3e-16 MNKYLALVVQLLALLLPTTLIAQSETPTDSLSVVNLDEVVVTGTGTNYLLKNAPVQTEII NAKTLQSYGSATLTEILSGLIPSIDFSHSDMGTAMQMGGLGDRYILILVDGKRLMSDLGG QTNLDMVDPTRIERIEVVKGASSALYGSDAIAGVINIITKKSRDNLSIDNSTRVASYGVI NQSNAFQYKVGDWTTLTDFNLKHSDGWQNTTCENPNRYEKPVTNSVNNTSNPYLDWQIGQ HLYWRQGKPLSAYVEGNYYRKDIHRPTGVPDYKTYDFRYHNTSAGAGMRWQTPQGAVLTA QMQYYMHAYYYVYTGETWAKEFLPDGQELSFPYFPGNVGLQSNQQRITTELKGVFALPFD QRLSAGVDLHHNWLIAPRRLDEDRVNDFQAGFYLQDEWTPTRNFNLTAGARLTYHPAFGA KFTPKVSLLYKLGPVNLRATYSEGFKTPTIKELHYRYVRQMAMVILHLGNPNLKAQTSRY VSASVEYHNPLVNVSATGYANFLDNMITLVTIPSREAPGDLIASYRPARVRQYKNMDSAK TYGADVTAKWRIYKQWTLTTSYSYLDTEALLHDDDKDVMRQVTIDGMAHHRATVGLSWSE AFLHQRYKLAVGLYGRMQSTRYYQDDGNGKPYHLWRLNTQQTIIPNENWSLDLNIGVDNL LNYYETTPHGLHYGTSTPGRTLYMTMSVHFGRAKQITPTKRSSRRSQAQEDEED >gi|228307264|gb|ACLR01000182.1| GENE 128 134926 - 135954 1293 342 aa, chain + ## HITS:1 COG:STM2025 KEGG:ns NR:ns ## COG: STM2025 COG4822 # Protein_GI_number: 16765355 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CbiK, Co2+ chelatase # Organism: Salmonella typhimurium LT2 # 53 329 3 256 264 105 31.0 1e-22 MKKLLTILSLCALGLTLLTCVGCQEDDNLALSNHDKKLQAVTKEVKAKKTTDKALLLVSF GSTWDKPQQTFKKVQEAFKKKFPDRDLYFAFTSEICMTRCAQKGWNYYAPKFYLEALGVA GYKDIAVQSLHIVPGEEFLRIQNCIKDFRNDGEHPEFAKTTVYLAGPLLEGDDDCKTVAA ELHKIYGKAVAENKLVSFMGHGNPENMNYGRGNARYHKIEEELQKLSPNYFVATVDMEGN LVDDLIARAKKAGKTEGTMLLHPLMSIAGDHANNDLKGGVDPQNPEEGSWRYEMNKAGYK CTLDDCTMNGLADYPAIVNVWISHMEKALAGEPLYTPEEDEK >gi|228307264|gb|ACLR01000182.1| GENE 129 136135 - 136830 547 231 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470914|ref|ZP_04055759.1| ## NR: gi|228470914|ref|ZP_04055759.1| hypothetical protein PORUE0001_0430 [Porphyromonas uenonis 60-3] # 1 231 1 231 231 432 100.0 1e-120 MQQSPLEEASALLAQLEQRREPAYADFMALRTKVSSRPESVLGIRMKWLRQAVKQLSCLL TLDEAIALLHERAFAWYEYKIIFGGVIGRLATPNEGLLLLYPLCDGWAVPDYYKELLAGW ASRGEVERQILLRSLAEHAHDANPYARRLTIVVWLDLIRHGLATPRAALDHVAPLQHDEA YYVQMAIAWLLAEMTLTGEPFLTEAIRTEITDATVLRMYQQKLRDSLRSNA >gi|228307264|gb|ACLR01000182.1| GENE 130 137156 - 137728 515 190 aa, chain - ## HITS:1 COG:BH0691 KEGG:ns NR:ns ## COG: BH0691 COG3385 # Protein_GI_number: 15613254 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 16 163 193 334 371 76 29.0 4e-14 MLQPANFSEGDIIAMDRAYISYEKFEELTQRGVIYVTKMKKNLVYTISKDVICQSPEGVV LVREQYVTFTKHKTKVRKEIKHQARIITYIGHKNRPISLLTNDMELPCEEIIEIYHRLWD IEPLFKQIKQNFPLKYFYGESANAIKLQIWVTLIANLLLMIMKRGLTRSWSLSDLATMVR IVLMYYIAVR >gi|228307264|gb|ACLR01000182.1| GENE 131 137969 - 138346 312 125 aa, chain - ## HITS:1 COG:SMb20766 KEGG:ns NR:ns ## COG: SMb20766 COG3385 # Protein_GI_number: 16265206 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 25 118 7 99 387 60 32.0 7e-10 MVTFAIKTNYIVTMPRSTHFIGLPLYAQIVQLIDKAEVLRISQSLGGERYVKRFDAWTHL IVMLYAVIKRFDSLREITTSLQSETHKLNHLGVKTMPTKSTLADANKRRSEAIFEAIYRG LYAKS >gi|228307264|gb|ACLR01000182.1| GENE 132 138639 - 138851 480 70 aa, chain + ## HITS:1 COG:no KEGG:BDI_1894 NR:ns ## KEGG: BDI_1894 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 5 69 1 65 66 72 63.0 4e-12 MEENMIAYIGTNAGLIWNALDKLGKMDVKQLKKATKIRTEKDVYAALGWLAKEEKLTFVY EDGTLLVSLR >gi|228307264|gb|ACLR01000182.1| GENE 133 139220 - 140131 1029 303 aa, chain - ## HITS:1 COG:AF0266 KEGG:ns NR:ns ## COG: AF0266 COG0697 # Protein_GI_number: 11497882 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Archaeoglobus fulgidus # 33 290 28 276 276 78 28.0 2e-14 MRSRWRLHLVMLCVTIIFGINGPFTKALLGGGLTPYTHMFCRFLGATILFWIASIWVPRE RINLKDWGKMALASLTGIFFNQGLFAIGMSMTSPVNQSLVATLGPIVTMLLAAVVLKEPI TRLKGIGVFVGASGALLLISTNGSSTAGSTLGDLICAIATISYAIYLTSFKALIQKYHPV TLMKWLFVISLLGSAPLGIRDMMRTEWSSFDATFYGQLAFVVVGATFVAYLLLLFAQRGL RPTVVSIYNYGIPVIASMLAVMMGQDQLTLTKVASAVLILLGVFMVTRSKSRQQLLREHL RNE >gi|228307264|gb|ACLR01000182.1| GENE 134 140153 - 141541 1734 462 aa, chain - ## HITS:1 COG:alr2494 KEGG:ns NR:ns ## COG: alr2494 COG0719 # Protein_GI_number: 17229986 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Nostoc sp. PCC 7120 # 25 442 33 444 453 166 28.0 9e-41 MSPRKQPPTAHLQYLDLYQSQQDYIDQHSLPVLQAQRDFALEALSEYALPQRGMEDWQRI DIESLYAPDYGINLQELDLAPAGHKQLPQYNCDLSVNALTIKASALNSNYLYTHYANQKR KLPEGVFVGSIKEFVKEYPDLAERYYGQIAEVDTDGTIALNTLFVQDAFVLYVPDGMQLE QPVQLVQLLHAQEPLLCIRRWLIILGDRAEASILVCDHTIDRTSFLINQVAEIYVGDGAQ LKLFDMEENSHQTHRTCTYFLRQGAESQVTLATYTLNNGITRNSFRTRFLGERAEQILGG VAVTNGTQHVDTFTRVEHIKPKCHSTQLFKNLLEEQSTGAFSGRIFVAQSAQQTEAYQSN RNMLLSPEARMYSKPQLEIYADDVQCSHGMATGHLDEEALFYMMQRGIPEHEARVMLSVA FVGDVIALMPLEDLRDRIESIVRNRLLGNEPTHCSQCGKLIF >gi|228307264|gb|ACLR01000182.1| GENE 135 141538 - 142314 174 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 229 7 222 318 71 25 2e-11 MSNVIIDIKNLHANIGDKEILKGINLTIREGETHAIMGPNGSGKSTLSSVLVGHPAFTVT SGEVTYLGQDLLAMDAVERAHAGLFLSFQYPVEIPGVSMVNFMRSAVNERRKTQGEKPMP AGEFLKMLKEKREVVGLDDRLLKRSVNEGFSGGEKKRNEIFQMAVLEPRLSILDETDSGL DIDALRAVAHGVNTLQRPDSACVVITHYQRLLDYIKPQFVHILYKGRIVTSGGPELALRL EDEGYDWIKEEVAKEEKQ >gi|228307264|gb|ACLR01000182.1| GENE 136 142360 - 143868 1569 502 aa, chain - ## HITS:1 COG:AGc3348 KEGG:ns NR:ns ## COG: AGc3348 COG0719 # Protein_GI_number: 15889127 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 502 44 543 543 696 65.0 0 MNNEHNPKQIVPTAAEPEVRAVTPTGEDILDDITQGDYKYGFVTDVHTETIPKGLNEEVV RLISAKKEEPEWLLEFRLKAYRHWLTLERPDWAHLSIPEIDYQDIIYYAAPRHKNEGDDT IDPEIEKTFDKLGIPLHERAMLSGNMAVDAVMDSVSVKTTFRTKLQELGIVFCSFNEAVR EHPDLVRKYLGKVVSSHDNYFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAANTGQ FERTLIVADEGAYVSYLEGCTAPMRDENQLHAAIVEIIAETDAEVKYSTVQNWYPGDKDG RGGIYNFVTKRGLCRGDRSKISWTQVETGSAITWKYPSCILRGDDSVGEFYSVAVTNNYQ QADTGTKMIHLGRNTRSTIVSKGISAGSSQNSYRGLVSIAASAENARNHSQCDSLLLSNH CGAHTYPYADIRNDSAVVEHEATTSKINEDQLFYCNQRGITTEEAVGLIVNGYAREVMSK LPMEFAVEAQKLLSVTLEGSVG >gi|228307264|gb|ACLR01000182.1| GENE 137 143861 - 144439 413 192 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470870|ref|ZP_04055715.1| ## NR: gi|228470870|ref|ZP_04055715.1| hypothetical protein PORUE0001_0439 [Porphyromonas uenonis 60-3] # 1 192 1 192 192 372 100.0 1e-102 MEGDTLNWIDFMVMGCMAWALFKGFKRGVVSALIGVLGITVGYVLVRWIGVPVALWISRT FGLPHGVAVVGAYVATFSLSCWGIAFLARPTVRAIKRSSLSVVNKLMGALFTGAFVIIFF SLIFNLTDFILPRGVLAQLPTIPTEEGKPTEPPQDQRDKSRLYDPVRGLIPWAALGDLTS WQDKQLKQQSSE >gi|228307264|gb|ACLR01000182.1| GENE 138 144452 - 145438 939 328 aa, chain - ## HITS:1 COG:RSc2823 KEGG:ns NR:ns ## COG: RSc2823 COG0142 # Protein_GI_number: 17547542 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Ralstonia solanacearum # 10 327 6 321 322 162 33.0 1e-39 MMSQEERTRLLIPIADFIKEFEQVFKRSLQSDASVLSHALEHLQHSSGKHVRPIIVGLCA QLCAGQTNERTLAAALVIELLHTASLIHDDVIDWSDTRRGQPTLNALYSNHQAVLMGDYV LSTAFLEIVSREHNQEMLRVVAQAGRNLSIGELMQLSLSKAHTYREEDYYAVVDRKTGTL FEASAKLGALSVNATDEEVERCARLGQLMGRAFQLQDDLFDYDKLQDVGKPTGHDLIEGK VSLPLLYVLNHATPTERDEIISYLQQPIEADSIDYLLRIARERGGIDYTERQIQQILREA IDLLRSFAPSATRETLERFITLLGERQK >gi|228307264|gb|ACLR01000182.1| GENE 139 145450 - 147393 2323 647 aa, chain - ## HITS:1 COG:CAC1050_2 KEGG:ns NR:ns ## COG: CAC1050_2 COG0171 # Protein_GI_number: 15894337 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Clostridium acetobutylicum # 328 638 1 309 310 367 55.0 1e-101 MNYGYVKVAAAVPYVRVADCYYNTSRIKEMIFQAEELGVEILTTPELSITGYTCGDLFHQ SFLLDQAQKALCQLVEETAETDVMVIVGMPVKVEEKLFNGAVAFQHGKILGAIPKTYLPN YREFQEKRWFSPSDSLQYKTVQMGSHTVPIGRNIIFKCGQVGIGIEICEDMWTPFTPGTR LSLYGAHIIFNLSASNENAGKHDYLRSLISGATSQSICGYVYASSGYGESSTDLVYTGKA FIAEVGKIVKEMRRFEYKERMIVSDIDVSRIHGERLINSSFKSAVNHFTDEEELESIPFT LRSEAKSQPMDRVIDRNPFMPEGANPEERCHEMFQIQVCGLIQRLKHMRAEHAVIGISGG LDSALALLVTAEAFDLLGLDRKQIIAVTMPGFGTSERTYRNGYAMMQALGVTIREIDIKE ATEQHLSAIDYKGNREDATFENAQARERTQILMDLANMYHAPVIGTGDLSEIALGWCTFN GDHMSMYAVNSGITKTSVQLIVGWYATHKAGDTPLATTLQDIVATPISPELLPIKDTKTG NEQQTQNLVGPYELHDFFIYHFLLDGFEPKKIFYLAKVAFEGAYTPQEIKHWMGVFFKRF FSQQFKRNAMPDGPKVLSVSLSSRGEWRMPSDAVSSMWLQEVENLEA >gi|228307264|gb|ACLR01000182.1| GENE 140 147584 - 147772 200 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 5 61 17 73 91 69 64.0 8e-11 MSISPEEIADLQGANENSPRNREIKVRKNEMKLRKKQIKVPKNFFVSPWRIKKLYRGILR FP >gi|228307264|gb|ACLR01000182.1| GENE 141 147807 - 148367 617 186 aa, chain - ## HITS:1 COG:aq_1661 KEGG:ns NR:ns ## COG: aq_1661 COG0566 # Protein_GI_number: 15606763 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Aquifex aeolicus # 27 171 26 167 211 76 33.0 3e-14 MPIEKTSILEMQRLTTEEYHTASKVPLTILLDNVRSMHNVGSIFRTADAFRIEELLLVGI TGCPPHPLLHKTAIGAEEAVPWRHLDSAIEALEQYRQEGRTILALEQTHQSITLGSQPAL DDRGAVLIVGNEVHGVSDEVIQYADYCLEIPQYGTKHSLNVSVATGIAIYDLCTPYLERH HRLTQG >gi|228307264|gb|ACLR01000182.1| GENE 142 148386 - 148727 529 113 aa, chain - ## HITS:1 COG:alr3795 KEGG:ns NR:ns ## COG: alr3795 COG0023 # Protein_GI_number: 17231287 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 1 (eIF-1/SUI1) and related proteins # Organism: Nostoc sp. PCC 7120 # 34 110 33 109 115 65 45.0 2e-11 MSKKKGKAPATGGIVYSTDPDWTPQAESLEVDTLPATQQRLRIEYSRAGRAGKEALIIRG FVGSDSDLADLARQLKQSLGCGGSTRDGEILIQQNNKEKLIKLLQSKGYKDTK >gi|228307264|gb|ACLR01000182.1| GENE 143 148738 - 150405 612 555 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|39938628|ref|NP_950394.1| ribosomal protein L13 [Onion yellows phytoplasma OY-M] # 41 555 34 546 546 240 30 3e-62 MENLSIYCTNLDEYLSVPPGATLYQIAQSYRTTLGFEPVNARVNNLTVALDWRLRESCQV EFVGLTEESGRHTYLRSLCLLFAKALHDELPHYHLSVRHSLSGGYFSVVKCGDKGITEEQ LALVKRRIDHLIAADLPFERRTVPAEEAVQIFTAMGEMDKVDLITSSGQPYVTYHYLDGY PDNYYGSLLLSTGQVQLYDLVPYLGGVLIRVPALEKPTELTPFEPQQPMREVFDKQSRLL NLLDVSYVGSLNKAIATGHFSEIVQVAEAAQEKEIAAIATEIAEAYERGVRIVLVAGPSS SGKTTFTKRLRLQLMANYLRPHQLSLDNYFVAREFTPLDDKGEYDYEHIEALDLELFASD LRRLLAGELVDMPIFDFNQGARVYQKELLQLGEGDLLLIEGIHALNPRLIPEDLQPLTYN IYISALTAIGLDAHNRIPSTDIRLLRRMVRDHKYRGYSAIDTISRWHSVRAGEERWIFPY QQRANVLFNSALMYEVAVLKTLAERILYQVPACVQEYSEARRLLRFLEHVRPAPFDVVPS TSLLREFIGGSSFHY >gi|228307264|gb|ACLR01000182.1| GENE 144 150629 - 152446 2099 605 aa, chain + ## HITS:1 COG:TP0771 KEGG:ns NR:ns ## COG: TP0771 COG1283 # Protein_GI_number: 15639758 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Treponema pallidum # 12 598 51 585 593 251 31.0 3e-66 MTFTLFDFIYLLGSLGLFLFGMKIMSEGIQKAAGDRMRQILSAMTSWRVLGLLTGVLVTA LVQSSSATTLMVVSFVNAGLLQLGQAISVIMGANIGTTVTAWVITLFGFKIDISTFAIPL FAVSIPLIYMKREQLNSLGEFLIGFSLLFLGLQFLKDSMPDLQSHPEALAFLQGYTDMGF GSILLFLLIGSVMTLVVQSSSATVAITLIMCSKGWIPFEIATAMILGENIGTTITANLAA LGANVNAKRAALSHLLFNVFGVLLVLIFFYPFTNMIANWLVNMGVGDPRELYAYTTQLSQ VYDPASMSAIASTDTLADPALAAVQAQIMSLATTVSIGLSLFHTTFNLLNAFVMIWFVPI YVKICQRAIPVKKSKKGATEQTHLRYIRAGILPTGEIGLLQVQQELAEYASRVTHMMSYC EGMLKTDNPIDLKKLYNKCEQEEDISDAVEVEIADYLNKISHTELGRESQSDILVYYRVA TEIESVADAAVGIAREINRYHQLGKSYTDMVRNNLLQIHVIATKTALKMSELLRRDKLSE ADARESYTLEKQLNDLRTLLKAQNMDNVRTQKYDYPESVSYMDLVGYYEQLGDYVLNVVQ AATKG Prediction of potential genes in microbial genomes Time: Fri May 27 10:08:01 2011 Seq name: gi|228307224|gb|ACLR01000183.1| Porphyromonas uenonis 60-3 ctg1118640599742, whole genome shotgun sequence Length of sequence - 41745 bp Number of predicted genes - 33, with homology - 30 Number of transcription units - 14, operones - 10 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 222 - 281 3.9 1 1 Op 1 . + CDS 530 - 1114 306 ## gi|228471031|ref|ZP_04055875.1| hypothetical protein PORUE0001_1419 2 1 Op 2 . + CDS 1187 - 3871 1978 ## COG0474 Cation transport ATPase 3 1 Op 3 . + CDS 3925 - 5280 1202 ## gi|228471019|ref|ZP_04055863.1| hypothetical protein PORUE0001_1421 4 1 Op 4 . + CDS 5303 - 5692 520 ## gi|228471010|ref|ZP_04055854.1| hypothetical protein PORUE0001_1422 5 1 Op 5 . + CDS 5705 - 7333 1843 ## Tery_1189 hypothetical protein 6 1 Op 6 . + CDS 7350 - 10733 2793 ## glr2966 hypothetical protein 7 1 Op 7 . + CDS 10742 - 12607 1774 ## gi|228471034|ref|ZP_04055878.1| hypothetical protein PORUE0001_1425 8 2 Op 1 . + CDS 12895 - 13209 156 ## gi|228471032|ref|ZP_04055876.1| hypothetical protein PORUE0001_1427 9 2 Op 2 . + CDS 13231 - 13788 669 ## gi|228471026|ref|ZP_04055870.1| hypothetical protein PORUE0001_1428 + Prom 13819 - 13878 2.3 10 3 Op 1 . + CDS 13898 - 14485 640 ## Metvu_0996 hypothetical protein 11 3 Op 2 . + CDS 14489 - 15106 388 ## gi|228471005|ref|ZP_04055849.1| Cpl-7 lysozyme domain protein + Term 15128 - 15187 11.2 12 4 Op 1 . + CDS 15933 - 16406 625 ## COG0526 Thiol-disulfide isomerase and thioredoxins 13 4 Op 2 . + CDS 16446 - 16970 888 ## COG2077 Peroxiredoxin + Term 17035 - 17086 11.0 14 5 Op 1 23/0.000 + CDS 17220 - 18209 1169 ## COG0714 MoxR-like ATPases 15 5 Op 2 . + CDS 18317 - 19189 944 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) + Term 19424 - 19468 0.7 + Prom 19653 - 19712 4.5 16 6 Tu 1 . + CDS 19900 - 20145 260 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 + Prom 20173 - 20232 2.3 17 7 Tu 1 . + CDS 20252 - 20692 124 ## + Prom 21501 - 21560 4.1 18 8 Op 1 . + CDS 21589 - 21837 182 ## 19 8 Op 2 . + CDS 21887 - 22333 331 ## gi|260591517|ref|ZP_05856975.1| hypothetical protein HMPREF0973_00950 20 9 Op 1 . + CDS 22614 - 23564 1081 ## PGN_0530 hypothetical protein 21 9 Op 2 5/0.000 + CDS 23561 - 24541 807 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 22 9 Op 3 . + CDS 24538 - 25566 1108 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 23 9 Op 4 . + CDS 25556 - 26218 650 ## PG1584 BatC protein 24 9 Op 5 . + CDS 26218 - 28005 1704 ## PGN_0526 aerotolerance-related exported protein BatD + Term 28036 - 28073 8.5 + Prom 28188 - 28247 4.1 25 10 Op 1 . + CDS 28428 - 29912 1747 ## COG0442 Prolyl-tRNA synthetase 26 10 Op 2 . + CDS 29923 - 30576 867 ## COG0603 Predicted PP-loop superfamily ATPase 27 10 Op 3 . + CDS 30585 - 31940 1391 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 31972 - 32002 1.1 28 11 Op 1 . - CDS 31968 - 32942 662 ## COG1409 Predicted phosphohydrolases 29 11 Op 2 . - CDS 33028 - 33438 499 ## lp_2098 lipoprotein precursor - Prom 33525 - 33584 2.5 - Term 33624 - 33662 -0.4 30 12 Tu 1 . - CDS 33665 - 36238 2527 ## COG0058 Glucan phosphorylase - Prom 36379 - 36438 2.9 + Prom 36186 - 36245 3.4 31 13 Tu 1 . + CDS 36420 - 36728 158 ## + Term 36757 - 36799 0.8 - Term 36741 - 36791 11.9 32 14 Op 1 . - CDS 36826 - 39516 3131 ## COG0474 Cation transport ATPase - Term 39540 - 39589 7.2 33 14 Op 2 . - CDS 39615 - 41609 2478 ## COG2987 Urocanate hydratase - Prom 41682 - 41741 3.9 Predicted protein(s) >gi|228307224|gb|ACLR01000183.1| GENE 1 530 - 1114 306 194 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471031|ref|ZP_04055875.1| ## NR: gi|228471031|ref|ZP_04055875.1| hypothetical protein PORUE0001_1419 [Porphyromonas uenonis 60-3] # 1 194 1 194 194 386 100.0 1e-106 MVLCSFAMAVLPSCSKRRVTQYDNNSSLGDKARSEQLMEGSDEGLPIEELSESNSLDNGA LPYEAQYGKNQTYLSDEPHATIKVKAPHQSDVVVIVRYDNPSGRVAGHIYVRRDQSASIQ LPNGRVYQTFFYCGNDWSPDKAMSDTIIGGFTRGETFSKDGKPARLKDKILSYELSTQEE GNFTTVPSSAKEMF >gi|228307224|gb|ACLR01000183.1| GENE 2 1187 - 3871 1978 894 aa, chain + ## HITS:1 COG:MTH1001 KEGG:ns NR:ns ## COG: MTH1001 COG0474 # Protein_GI_number: 15679019 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 9 890 20 829 844 437 34.0 1e-122 MSTTPASHSSNLGLTSAEVAKSRQKYGSNELTPPKKESLWKKFLEKFEDPIIIILLVAMF LSLGVSCYEYFVIGERSLALFLEPAGVLLAVLLATGVAFYFELQSEKEFEILNQVNEDIL YKVYRDGQISQILKKELVVGDVVLLETGEEVPADGTLIECISLQMDESSLTGEPHIEKST NPEEFDSEATYPTNYICRGTSVLDGHCLFRIDKVGDATEYGRVYEGAQMDNSVKTPLNNQ LDGLADLITKVSYAIAILILVGSAIIYAMQGGFSNADWAHTLSYFLQKVMIAVTVIVVAV PEGLPMSVTLSLAYSMRSMMKTNNLVRRMHACETMGAATVICTDKTGTLTQNRMTVTGTS FVEGIFPQLVHLSMAVNSTAHLDQHDSEHPSVLGNPTEGALLLWLHQQGVDYKELRQDYP LVSQLPFSTERKYMASVIQIDGVDHLLIKGAPEIVMQHCSLSTATRSYYEDQLLSYQSRA MRTIGFAYAPLNGATPFVDNKLSVDTLTFIGVVGISDPIRPEVPAAIQSCTDAGIQVKIV TGDTSGTAKEIGRQIGLWDDSCTERNIIAGAEFAQMSDEELASRVQDVRIVSRARPMDKE RLVRLLQEQGEVVAVTGDGTNDAPALNRAHVGLSMGDGTSVAKEASDITILDNSFASISK AVMWGRSLYLNIQRFILFQMTINVAACIIVLIGAFLDTESPLTVTQMLWVNLIMDTFAAL ALASLPPSTRVMKSKPRKQTDNIISPAMAKRIFGLGSFFVVLLFAVMQYFKHAEVTTLTE FSFAELGRHFFDFNQGAFSGYELTVFFCFFVFLQFWNMFNAKAFHSGKSALADLKHCRNF LFIASVIVIGQVVITTFGGEMFRVVPLDLVSWAIIVLSTSLVLWCGEIFRRCKA >gi|228307224|gb|ACLR01000183.1| GENE 3 3925 - 5280 1202 451 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471019|ref|ZP_04055863.1| ## NR: gi|228471019|ref|ZP_04055863.1| hypothetical protein PORUE0001_1421 [Porphyromonas uenonis 60-3] # 1 451 1 451 451 908 100.0 0 MNKISARLLTITLASYALLQLVSCSNKVPTAPDTKYIPDFHDTYYREKIDAIVPDQLALY VDYSTCIAQGQNSPFFQALVPSWTNAAKSFFAIKGSTIEEHSADSTFLLLRSVSEVNYAD IKTAAERIAHGNTEGVLLTDGEYFQPSIAQGNINNPYMAEAFKTWLKRGHDIYIYIEPYE EVYKGETYQKKRFYFIFTDNRLAGNIYERIKQTVDRSQYDGVQLFHLSADHPALYTEGGQ TSSPHSILSAKTTPGGSYEIQDWEIDWQNGIEPLLVNAIDPETGDALPEGIPFTSGLHLD KSSFGGCHITEIKATVYNINQAYTDYYNSREAGTPPEEQISSSECDHFVKIDDKAWRDES VINLRFDTEYYNPASALDGAPFNYFMIRLSVADVELEDQYKEMFSFDSIDMPGSQNVSIV SSIEQCLADPDIIAKMKSCPIYTIYVKANQR >gi|228307224|gb|ACLR01000183.1| GENE 4 5303 - 5692 520 129 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471010|ref|ZP_04055854.1| ## NR: gi|228471010|ref|ZP_04055854.1| hypothetical protein PORUE0001_1422 [Porphyromonas uenonis 60-3] # 1 129 1 129 129 230 100.0 2e-59 MTPVTNVNQLTQLMNSTMIYAIVVSLVALALAWLISSYLIPWEGGHDRSYIKRRIVYLVI GAVAVLGFWMYNDLVVMSHIKNVGLQNMFAACNLKCVGINLGIYLVVGLILMFAFRHSKF GSILGKEKK >gi|228307224|gb|ACLR01000183.1| GENE 5 5705 - 7333 1843 542 aa, chain + ## HITS:1 COG:no KEGG:Tery_1189 NR:ns ## KEGG: Tery_1189 # Name: not_defined # Def: hypothetical protein # Organism: T.erythraeum # Pathway: not_defined # 5 458 3 434 490 124 25.0 1e-26 MPTPFFVLGIGGTGMRCIESLIHLCAMGMFDDTEIHLLALDTDKNNGNFSRLKEVKEAYC NAKGSKDADRVALSNTFFSANLKYYEFSPNYEQKSTFRAVFGYDDTHYHNREEADLADLV FSDNVQNFNLRHGYRAQTHLGSMMMYHSIIEAAQSPRDNDLKRFLGRLTTAAQNGQPRVF ILGSVFGGTGASSIPIIPQAISRAAAIMSNGVANVLSNAYFGSTLLTAYFTFKAPTGSEL SNQKVIATSDKFALNSQVAMMFYNDDKTVASTYQKFYMLGTSGLDWDPMQKQSDKISETI TGGEQQKNDSHYIELLAACAALSFYRMDESQLRDNKAQNQTDYMYRAISDTGKLDFQDFV GKDRAKEFAQKFGMLIAFALFCNGEANFVDSVQSGNQKEIPGFTEMDVTQVTSLKNYFNL FFVKKLSDETLQEGWLRQLHRSAGSGDSFLFHADLFSPASFRDLMKYDWNDKLYRNEGVG KDNKYSKGGKLLLNKSKFDPFKKTLISIRDDAQKQEWTQISNKGEQLYKLIFDTLAKLYK FN >gi|228307224|gb|ACLR01000183.1| GENE 6 7350 - 10733 2793 1127 aa, chain + ## HITS:1 COG:no KEGG:glr2966 NR:ns ## KEGG: glr2966 # Name: not_defined # Def: hypothetical protein # Organism: G.violaceus # Pathway: not_defined # 433 1006 466 976 1083 84 23.0 4e-14 MSKALLIKSYTNLTTGTPGEWNELNMPVSYIQGIETGKILDDLTADKLNTLISGIPTPWA RAKLFKFALNTLATPDPNIDSSGLQQFYEMLYDEWKGLLAVIALYPDRIRFSNPIEMDVN GQAYGIAPSFGRMLFDDRDLWSNQDKLATEPDTQPFIQLIYYRDSLVGGTSPMTGVFTGV EYDHLPEASDISWYRGGKFECPDPYLSPDHLQKLYLFVKNLNSNLRAFEEKINSQRGDKP HEEINGFKQMSRLWEEELRQKGSNLRDRGPIASYSNLECPFSLLLESNVPVYLKLDDYTF TYTNERDGEYKLIGDIQKLLSDDKFVIGWVEDEDARPKLSEAPVFYLKTKDLQSKKNYYF TISLSESGVDVFKNDLSGMLGYSDSDNVSLSGVITDSGQLAATLSVKVDGQRVTLNTREY AIHWMTDLGKVIMWPNFVSENWNKYYLYSEFTSDAQELFEPIFKIQNQFLKTIKGTFWTG DYQAEVDEPKQVDVKKLITYPAGEGEDLHKYNIICTDKPLGGVVAYVKDMGKPSHAGFLI FRPQIVEDRSSLPPQTEAVVGIDFGSNNTCLFYNEGDREPAPIEFENYRLVVVGKENNNL KAVAENNELLFFSNYPASNGQIKSWLHEQDSRYNTHNEALEIAGGVPVNRPNVLVRKMDR FAITTQAGTLHYNMKWLSDNRGLLKKSAFLKTIWLQACAYLYKNRIRPARLVWSYPGSMM PADRTELERIYEDLCKLTPISNQRKPELSDQLTTEAEAVCSFALSQEFGLNVNNLFLGID VGGSTSDILILGKDPNNGNRASLLRESSVRMAAGVFFNTVIKSQEFREALIAFHEGRRTN VNVSNIKALQSEPSKAPYFLNSIFDQLQTREEYDEFYRSIDNNAKSVFTIPAYVTGLLLF YSGMLIGKTIKVEQLDQVSRVDVLSFGKGGRLFHWLKNSAGNRLTNEYYGACLNAGVRCV IDKEIQVSYREEIAVDNKAEVAKGLVNAKELYKKESEVSSDICGEDDVKYTMEDGSIRTL RVDDELTGEYFTNEMNNFTFQSVPNFEKFINIFIDFVCQKTHLYPQAESLYEDLADLPNR IASFICNSDDEYKKARSNQRDGFHYHQPLIIAEGACFLETLIKRVFN >gi|228307224|gb|ACLR01000183.1| GENE 7 10742 - 12607 1774 621 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471034|ref|ZP_04055878.1| ## NR: gi|228471034|ref|ZP_04055878.1| hypothetical protein PORUE0001_1425 [Porphyromonas uenonis 60-3] # 1 621 1 621 621 1086 100.0 0 MSQSLALYIDKYYIIGASISDDVVYRVTPSNNEDRFWLYFYEDTASDKIIYGKSYKRAYH SNTPHYHGDIFSQMIDREKTFKRYGRDQELHKIFKASGIVDELKEALHKDDQAPITTYLS FSQDISDAARLTFIRDVLEPEDFDVKESIVRIDHLALEHTFRAKRYDQDGHYLLLNACNE NLHYSLYKHTGDILIRVHEGCLEGLGINLTSRALLEYVLKEINKRQLIIREEDRKDEYLH LESYVEEWLSELQAAQPGLPITLTNIRLSKMSDNPYNVTLLRQYIEERSKAIIEDIIREI TSSVSRLDISQSDLKGVLFLGNTFENSQFEQALFKRYTFSPEASIHYTDSDLYTIIGVYP QMDCSQFSEATQSSLAQGEDELKRQQLAKEEERRKREAEQSRAEQAEAERKAFETKKNYD EAMNNVADYEKQGEYAQMLDWAKIALELSPDSAEAKKKVEESTRLLSEMKVREEQYKSTM MRAQKSFGDGLWSEAIAQAEMALSIKPTSKEANRIKSEASKLLERAEQIDTFFTKAETYL SQKVYKEARMEIQKVLALDKNNKRAIDQLSAIDQAIKELHKKIDALKLELEGATESGDLD TAISLANKLIEIDTEHQRRVG >gi|228307224|gb|ACLR01000183.1| GENE 8 12895 - 13209 156 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471032|ref|ZP_04055876.1| ## NR: gi|228471032|ref|ZP_04055876.1| hypothetical protein PORUE0001_1427 [Porphyromonas uenonis 60-3] # 1 104 1 104 104 149 100.0 4e-35 MLLKLQEQYPEKKESFKKLFNQIFEGEASSAQRSSDKATKRATTPATTDDFFDMPSPSKR EKPIGKGSTNHPPKPQRETSADDFFGTASPSTSKKGVTLDDFNF >gi|228307224|gb|ACLR01000183.1| GENE 9 13231 - 13788 669 185 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471026|ref|ZP_04055870.1| ## NR: gi|228471026|ref|ZP_04055870.1| hypothetical protein PORUE0001_1428 [Porphyromonas uenonis 60-3] # 1 185 1 185 185 372 100.0 1e-102 MAEFNLKKKVTLRKKQEQVNFTFDDMLKIKLFWGGIHAILRHLRFSPLFKKKDGSVGGVF SSDYRDKKSDLGSLDQFPYILHLGDDAEEPVDYSEDTEQINVTSLEDIDEAYVCFIHYAT INELDATYTEANARIEVQSDSGDYLEVLADSPDSGPVYYVCSIKNSGGIYTLKNASQVMN PGTCL >gi|228307224|gb|ACLR01000183.1| GENE 10 13898 - 14485 640 195 aa, chain + ## HITS:1 COG:no KEGG:Metvu_0996 NR:ns ## KEGG: Metvu_0996 # Name: not_defined # Def: hypothetical protein # Organism: M.vulcanius # Pathway: not_defined # 10 180 4 164 181 62 31.0 7e-09 MAEVKLKKKITLRKKQEQADFTFDGKLKVKLFWKEGVIESDMDLCLFFKKKDGSVGGVFS NEYRGKKSDLGSLDQFPYILHMGDAKEATGDTEESEQINVASLDEIDEAYACIVNYTAAV NELDVTYSQASARIEIQSDSGDYLEVLADSPDEGPVYCVCSIKNNGGTYALKNESQVMDL SRAFEDIPGFALICN >gi|228307224|gb|ACLR01000183.1| GENE 11 14489 - 15106 388 205 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471005|ref|ZP_04055849.1| ## NR: gi|228471005|ref|ZP_04055849.1| Cpl-7 lysozyme domain protein [Porphyromonas uenonis 60-3] # 1 205 1 205 205 289 100.0 6e-77 MAPHQDKVTLKRKVTLREKQPSATPTPSDQAPKSSRPKVWILVIVIVALIGCGYFLFNNR DAQPTESTELVAATEVSPSDSPAGEQASSQDADGEATPELPDAPQSTEAQQDSEAPASAA TATEPAKEHPVSTESKPAQDASTATATETRASASATVDPNKSIDEVARDVIRGLYGNGTT RKANLGSRYAEIQKRVNEMYQSLPR >gi|228307224|gb|ACLR01000183.1| GENE 12 15933 - 16406 625 157 aa, chain + ## HITS:1 COG:BB0061 KEGG:ns NR:ns ## COG: BB0061 COG0526 # Protein_GI_number: 15594407 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Borrelia burgdorferi # 49 147 14 111 117 89 36.0 3e-18 MKRIQFIQKSLLLMTVLLTLSVACTAQSKKETTKAEIQHINANYMREHIYDFEAHPDTFV YKGDKPAIIDFYADWCRPCRQLAPKLQEVADRYADQLVVYKVNVDENPQLATLFGVQSIP MVLFVPLDDLPYKSLGDLPMEHIEGFLGKIGVKTNNQ >gi|228307224|gb|ACLR01000183.1| GENE 13 16446 - 16970 888 174 aa, chain + ## HITS:1 COG:YPO2342 KEGG:ns NR:ns ## COG: YPO2342 COG2077 # Protein_GI_number: 16122566 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Yersinia pestis # 3 174 4 167 167 194 60.0 7e-50 MSTVKFQDKITVTLSGEQPKVGTMAPNFELVRKDLSTAKLSDYRGKRVVLNIFPSIDTGV CAASVRRFNAEAAKLDNTVVLCISQDLPFAQARFCGAEGLDNVETLSAFRCCSIPSSEPA FCKGYGLMMQDGPLAGLQARCVIVIDAEGKVIYEELVPEITQEPNYDKAIAALK >gi|228307224|gb|ACLR01000183.1| GENE 14 17220 - 18209 1169 329 aa, chain + ## HITS:1 COG:BB0176 KEGG:ns NR:ns ## COG: BB0176 COG0714 # Protein_GI_number: 15594521 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Borrelia burgdorferi # 20 329 24 337 337 305 50.0 6e-83 MTQVSDLENRQAYITQQSGFIRQLQEGMHTTIIGQEHLVESLLIGLLADGHILLEGVPGL AKTLAITTLAKLIDADYSRIQFTPDLLPADLIGTLIYSQRSESFSVKKGPIFAHFVLADE INRAPAKVQSALLEAMQERQVTLGEETYPLPSPFLVMATQNPIEQEGTYRLPEAQVDRFL LKVVLDYPSHEEEMKIIEMNLASQLPSVKPVTTAQQILAAREAVQQVYLDEKILRYIVDL VMATRQAESVPALQGMIAYGASPRASISLAAAARAYAFIAQRAYVIPEDVRAVCHDVLRH RLGMSYEADAVGMSADKAIDEIINVVPVP >gi|228307224|gb|ACLR01000183.1| GENE 15 18317 - 19189 944 290 aa, chain + ## HITS:1 COG:BB0175 KEGG:ns NR:ns ## COG: BB0175 COG1721 # Protein_GI_number: 15594520 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Borrelia burgdorferi # 7 278 14 279 291 129 28.0 7e-30 MQDLLRKVRRIEIKARGLSQNILAGQYRSAFKGRGMAFSEVREYYVGDDVRDIDWNVTAR YAQPHVKVFEEERELTIMLLVDVSHSLDFGSTSETKRDLVATIAATIAFACIHNNDRVGL MLYTDRVERYIPAGQGRKHVLQLIREILTYRPERNSTQISSSLEMLSRVVKKRCSAFIVS DFITDEPTPAERALIQRTARRHDLLAIRVVDRRDYDLSAMGLTLMRDLETGASRYVDTSS ARLREQYATNYTTFATEWERLMRESGIDHAIAETGEDIIPVLSQLFRKRI >gi|228307224|gb|ACLR01000183.1| GENE 16 19900 - 20145 260 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 24 81 1 58 58 106 100.0 5e-22 MRLLHKGESLCCFRDSALVTYGGMLPSDLTLSALRFILSAKSRQSCLQDCETVDFCNSLI MRQSWYFTNHFDLYAVFSLHL >gi|228307224|gb|ACLR01000183.1| GENE 17 20252 - 20692 124 146 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLIIGAGIASYFIIIYPLNWGISEELGSGFIITSDKSLLYRDGNTEYFVLPFGVTKYTY NTKWIVAYTEGYSITRNLQEKKNSSSLTNYWIIDKEMPIHHNKQDSVVLYINGIAYPIIT NGLIGPMDSLSFIDSVRKFDIPLRIN >gi|228307224|gb|ACLR01000183.1| GENE 18 21589 - 21837 182 82 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTYKNFSILTKVIITLILTYSVFMILHMSIFDLLSMSTSVSFTAFLIEKMIPNISAVIAL VFLIRYLWITGKNSNTSKKRFH >gi|228307224|gb|ACLR01000183.1| GENE 19 21887 - 22333 331 148 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260591517|ref|ZP_05856975.1| ## NR: gi|260591517|ref|ZP_05856975.1| hypothetical protein HMPREF0973_00950 [Prevotella veroralis F0319] # 1 148 1 148 148 253 85.0 2e-66 MESNEAIRNILHSILVVFVLAACQNKNDINKIVSNHWQQDSINCIVDFSSCFSFDWDVCY YFSSKCSLEEINKDLGIQFNEFEDTSDRMIFVHDNRITYTQDWYYTPDKPQTGVMLDHNI RKLKMKKRNAKFRVEKKHDMYLLIPIYE >gi|228307224|gb|ACLR01000183.1| GENE 20 22614 - 23564 1081 316 aa, chain + ## HITS:1 COG:no KEGG:PGN_0530 NR:ns ## KEGG: PGN_0530 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 20 261 21 265 318 154 37.0 5e-36 MRYRLLLYILLICGGGGLWSFAAAQDVAITTELTPSTIQIGEYAQIKMTIRTNDLDNTLL VIPQERQMGQAEMIAFEVTDTIPLQGTEVQLNALMTITSFAEGMAELPAFGVTVGGKSYF SKPLYLKVTMPEVDTTQPLKYNPIKAPVSVSLRWWEYILLVLMSPITWVVLGIVAVVLFI LWYRNYKRTRPEPEVVVVPLTALETFDQTLATLRALPFDHQEEQIAYYDGLITALRSYLT EGLDLEIDELTARELAQLLQKAPYDVAPNALAQWVIHSEWVRFADTWAEPAWQDEDATTI YEVVHQLASRKEGKSL >gi|228307224|gb|ACLR01000183.1| GENE 21 23561 - 24541 807 326 aa, chain + ## HITS:1 COG:VCA0172 KEGG:ns NR:ns ## COG: VCA0172 COG2304 # Protein_GI_number: 15600942 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Vibrio cholerae # 8 311 8 314 318 136 33.0 5e-32 MIWVHPEWLWALLLLPLLVLLYIRYNKRHQAKLSLSAYRLLPKGSGWRSYLRALPFALEL LALASMILALARPQDSSHWEERSIQGIDLVLAMDLSGSMQALDLKPNRFEAARDVASEMI AARPNDNIGLVVFAGESFTLCPLTVDHDVILQMLDATEIGQLEDGTAIGLGLATAINTLR GSDNKSKVIILLTDGSNNAGDITPSMAAELAQQYGIRIYTVAAGTNGVAKFPVQTASGIE YVEADVQIDEGTLRHIAQQTGGKYYRATDETKLHEIYKEIDSLEKSRLTSRSVSAYEERY MLFALLAIVLLGAAFLLRTTLLRANP >gi|228307224|gb|ACLR01000183.1| GENE 22 24538 - 25566 1108 342 aa, chain + ## HITS:1 COG:PA3073 KEGG:ns NR:ns ## COG: PA3073 COG2304 # Protein_GI_number: 15598269 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Pseudomonas aeruginosa # 1 333 1 333 340 76 27.0 7e-14 MIQFAYPFLLWLLLLVPLLLLVMIAGQRRRRKQQLRFATTQMLRQIMPDRSAKRDWWRAS FKLLSIALLIVALARPQLYTHAPVSAQQTVGVDLAFCIDVSNSMAARDVKPDRIGFAKQI VTHTMQQLAGSRIAMIVFAGGAYIRLPLTPDLPTARTFLADIQPGMVSNQGTNLGQALER SAQALSAPSRAGKAVILLTDGEDHEGGLEEGIKRLKEQGIKAYVVTIGLPEGATIPIGET LLTDSLGVPVLSKPNPEITADIADATGGQSFVGSSPRAISNQLVNQLRTLPQANLSGEGD QIEELYALPTLAALILLLLANGIMRRKSRLFSRIQIFGHHDA >gi|228307224|gb|ACLR01000183.1| GENE 23 25556 - 26218 650 220 aa, chain + ## HITS:1 COG:no KEGG:PG1584 NR:ns ## KEGG: PG1584 # Name: batC # Def: BatC protein # Organism: P.gingivalis # Pathway: not_defined # 10 219 14 242 247 100 32.0 3e-20 MMRKSLYIVLLLLSSLTLVSQTVRLDARRGNKSYQRGNYSSARKAYLSSVARDSVYAPAR LGLGDALYMSGDTVAAVQMWQRIVSDSKADPRLQALAWHNLGNRCMDTRQYDKAIEAYKE SLRRNPTDNETRYNLALAIKLNKQPPQQGGGGGGGGGSQSDPSQTPPEQQPNEQPQGKKP DLDKSQADRILDALRQQEQHTRQRINQRQPQQQNPNKKNW >gi|228307224|gb|ACLR01000183.1| GENE 24 26218 - 28005 1704 595 aa, chain + ## HITS:1 COG:no KEGG:PGN_0526 NR:ns ## KEGG: PGN_0526 # Name: batD # Def: aerotolerance-related exported protein BatD # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 10 573 5 570 600 215 28.0 4e-54 MLRLRTSIQRTLLTLTWLCAVAFAGLAQLTVIVPPQVAEGETFRLVYRVAGAHELGAFTA PQIASELKVLYGPQLNVLHEMRGGTSKEYTTITYTLQASKAGSYAISAAQLRVGQRSLMA LSKRVQVVKAQGLSQQSLASGEALRIADRDMYMRAVVSSQSVYTQQPVLVSLYLYSRYGN LAGVDRKPPEVTDFVTKEIPLQRTTWGTERVGGRLMYKALIWQILAYPQRSGELIIPSFE YEFQVAVNRNVDNEEDLFANKAVATTHKKLHSQPLKLTVRPLPEGAPEGYDQLVGSFQVQ GTLSAPDPTYETGRAMTYRLDITGRGNVSLLLAPELGLSDKFEVYEPQLIRDDQEVRNGN TEVHRTYEYTIIPHATGQQTLPAVSLPYFDPATSSYRTATTAPIRIEVAQGSNDVPQVGK AGEAGTNSQRYAPYPYEAPAPMSGWHPWSRAGWAYWLLYLLLIIAGGVAYRIIRSGQRLR ADHVAYHKKRSTPMAEQQIQAIRQLVKAGQQTEATTRLYATITQYLQDRYALTTSSLTRQ QLASALKQQGVADAEVNVWLTLLSEVELTRYAPLQDGDSLPRWVDQLEQLISQSR >gi|228307224|gb|ACLR01000183.1| GENE 25 28428 - 29912 1747 494 aa, chain + ## HITS:1 COG:BB0402 KEGG:ns NR:ns ## COG: BB0402 COG0442 # Protein_GI_number: 15594747 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Borrelia burgdorferi # 9 494 5 488 488 481 50.0 1e-135 MAKKEIKELTPRDENYSQWYQDIVVKAGLAENSSVRGCMVIKPYGYGIWEKMQQDLDRRF KETGHSNAYFPLFIPKSYLSREAEHVEGFAKECAVVTHYRLRTNEAGDGVEVDPNAKLEE ELIVRPTSETIIWSTYKNWIQSYRDLPLLCNQWANVVRWEMRTRLFLRTAEFLWQEGHTA HATQEEAIAEARKMIGVYEDFAREMLALPVIVGVKSETERFAGAIDTYTIEAMMQDGKAL QSGTSHFLGQNFAKAFDVTFLDKEGNRDYVWATSWGVSTRLVGALIMAHSDDNGLVLPPR IAPIQVVIVPIYKSEEELQRIHETADKIVSELRQHGVSVQIDDNDNKKPGWKFAEYEMKG VPVRLALGMRDLEHGTVEVARRDTLTKETMPLEGISAHIEQLLEDIQSNLYNRSLQSLKE RTYICDSYDEFKERIEDGGFFLCHWDGTAETEARIKEETKATIRCIPRDIPSEPGRCMVT GRPSKCRVIIARSY >gi|228307224|gb|ACLR01000183.1| GENE 26 29923 - 30576 867 217 aa, chain + ## HITS:1 COG:BMEI0095 KEGG:ns NR:ns ## COG: BMEI0095 COG0603 # Protein_GI_number: 17986379 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Brucella melitensis # 4 217 3 219 232 169 42.0 2e-42 MRNSLIALSGGVDSTTLLYEYREEIACAVGFDYGSKHNARELAAAKAICRELEIPYLIIP LAFIGEYFRSDLLLSGGEMQLGDYSEENMSSTVVPFRNGIMLSVLAGLAESRDLQQVLIA NHFGDHAIYPDCRESFVKPMGEAITAGTSNGVKLVAPYTALTKAEIVARGTRLGVPYSKT YSCYQGGERHCGRCGTCRERHDAFVANGLEDPTLYEE >gi|228307224|gb|ACLR01000183.1| GENE 27 30585 - 31940 1391 451 aa, chain + ## HITS:1 COG:SPBC887.14c KEGG:ns NR:ns ## COG: SPBC887.14c COG0507 # Protein_GI_number: 19113280 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Schizosaccharomyces pombe # 4 449 305 783 805 212 32.0 1e-54 MLVVPEAFDQNNAEQMSALQCLEQTSMSLFLTGSAGTGKSYFLKNYCEVTRKKFVKLAPT GLAALNIHGQTIHSFFRLPLAPLTDPNHTSAITRRYRKDKRELIRQLDLIIIDEISMVRC DLLDAMDRILRSVRHSKVPFGGVQLLMVGDPFQLPPVTTTADQEEMQRAYPESDGFYFFE AHSYAALAPISIVLRRMYRQSDQHFVSALEEIRLGRVSEDTVALLNSRVSPQWQKELLQS DQHAVLLFSHRANVEAYNLSRCAQLDAKEVTFRGKLKGKIPASALPVPEEFSLKVGTQVM LVSNHPDGAWVNGTTGVITKLVGGSVGDITEPYAKVKTPEGETIIVTPHTWSQVDYDYDE KKGEIVERQTGSYTQLPLIVAYSITVHKAQGQTCDQIVVDPSRFFAPGQGYVALSRCRTL EGLTLTQPLKPHNLRTAPSVLQFYRKILSHV >gi|228307224|gb|ACLR01000183.1| GENE 28 31968 - 32942 662 324 aa, chain - ## HITS:1 COG:all2852 KEGG:ns NR:ns ## COG: all2852 COG1409 # Protein_GI_number: 17230344 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Nostoc sp. PCC 7120 # 4 156 113 250 371 98 36.0 1e-20 MAPYGYDASSSISRGPALCYVSEPLPGLRVIGIDACQYDDNLANNYPTTAGRLDEERIQW IEDQVRQANAQGKQVIAMMHHGIVEHFPGQSLLAKEYLIQDYDRIAERLAEAGLQYVFTG HFHAQDIAAKSYNQSVIHDIETGSTVTYPCPYRLVEVTPTELRISSRQIALAMPSQIASE GTISLQDYAYQHLELGMNDLVRFLTEHLESQDSASVIAPYKGVIDQAIPELKPLFMEIYA NHLQGDERGLHHNPDSTARMTEPYPGDLFDQTKGLIQGLVPSLTQQIELFETALYDTSES DNNVSLPYDHTARLDRQRLAKSKP >gi|228307224|gb|ACLR01000183.1| GENE 29 33028 - 33438 499 136 aa, chain - ## HITS:1 COG:no KEGG:lp_2098 NR:ns ## KEGG: lp_2098 # Name: not_defined # Def: lipoprotein precursor # Organism: L.plantarum # Pathway: not_defined # 6 135 5 133 440 78 37.0 8e-14 MKQKTQSLTRLASLLISTIILLALPLEGWAERPPLSVKSQYTLLVCSDPHIMAPELVVQE GSAFEETLRSDRKLLLESVQIFDQLIKEALEIRPDLFLICGDLTKDGELASYRYLTQRLD RLTEAGIKVLVVPGNL >gi|228307224|gb|ACLR01000183.1| GENE 30 33665 - 36238 2527 857 aa, chain - ## HITS:1 COG:all2806 KEGG:ns NR:ns ## COG: all2806 COG0058 # Protein_GI_number: 17230298 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Nostoc sp. PCC 7120 # 15 708 11 720 737 578 42.0 1e-164 MIPQYKCNPPQWTEIYSQSNLPAELQSLRALTMNLWWSWQPRAIRLFQSIDPELWAQTDG NPCWMLHLLGAERIAELCQDQHFLAEVQALYDELQAYLQERPDETRPSVAYFCMEYGISN TLHIYSGGLGILAGDYVKEASDSNVRLTAVGLLYRYGYFTQSLDPSGNQVAHYVPQNFHN LPLEPVLNERGERLTLHLEMASLPVACQVWRVPVGRVSLYLLDTDVPENGDLAKSITHSL YGGDWENRLRQEYLLGIGGTMLLKQLGITCDVYHMNEGHAAFMNVERLVNLVEDRGLPCD VALEVVRASSLYTVHTPVPAGHDYFEDALIDRYFTPFYSRLGISRDEFIQLGKDSHGSGG KFSMSVLALHTSQEANGVSKLHGDVSKRMFAPVWEGFFPEESHVSYVTNGVHLPTWAAPE WQQFFVRHFGADYLNHQSQEEMWARIMSVPSEDIRQIRQCLKRRLIQHIQSTIIKTHGEI GLPPQLAKATLDELQERALYIGFSRRFATYKRAHLLFEDLETLAKILDNEERPVRFIFAG KAHPADGGGQALIKRIIEVSRMPQFVGKIIFLPDYDIALAKTLIPGVDVWLNNPTRLMEA SGTSGEKAEMNGVLNLSVLDGWWYEGYKEGAGWALSAERTYTDQHLQDQLDAMTIYQLIE QEIVPTYYADMPTGCSDRWVDYIKRSMLYIAPHFTMRRMLDDYYERLYNKLAVRSELLEH QGYQQARDIVAWKQRVAATWDTITVQEATFEGVMREPNYNGQHSDPTFRVTIDAGQVEAE LVAELIVTTRDDLTGEVQYVGKDLFHEVMPRMGTTRTYELTVPSAQPGKYQIAVRLRPYL PELPHLMDFAYVRWISF >gi|228307224|gb|ACLR01000183.1| GENE 31 36420 - 36728 158 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKVGHPKWTYDREGASMALSRKSTDCSVEILETPARNGKILRNFEIFLPKFHFILPNFY FPVPWGIFVCSVKLLDFLGRNRNQRRCPLRCKVSLQRCTARF >gi|228307224|gb|ACLR01000183.1| GENE 32 36826 - 39516 3131 896 aa, chain - ## HITS:1 COG:MTH1001 KEGG:ns NR:ns ## COG: MTH1001 COG0474 # Protein_GI_number: 15679019 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 2 882 17 822 844 421 34.0 1e-117 MEEKHHYTGLTDAQVLESRKEHGANVLTPPQKEPLWRQFLEKFTDPLIIILLIAGGLSVG ISCYEYFGLGQGAEVFFEPVGIFVAILLATGLAFYFELQADKEFTILNQAHDDELVTLIR NGNVTQVPRREVVVGDIVILDSGEEVPADCELLEATMLQMDESTLTGEPFCNKSVRPEEF DQGATYPTNHVMKGTKVMEGHGICKVLAVGDKTEQGKVFEAVQIEEGVKTPLSEQLDGLS NWITWVSYGIAALIVIGRVIVYLVTNGTDIFGSVEQATPFFAYILQTLMIAVTLIVVAVP EGLPMAVTLSLAYSMRRMLRTNNLVRKMHACETMGATTVICTDKTGTLTQNQMSVDEMKL YGDTPQDLLHEGIAVNSTASLDLSDPANPQVLGNPTEGALLLWLHGQGVDYRSLREQAET VAEVPFSTERKYMVTLVESTRLQGKRVLYIKGAPEIVFDLCAESAVSREELEQQLTEYQH RAMRTLGFAYQLVEEGDSVIEFSQLTASKLCFIGVVAIADPVRVEVPAAVQECVHAGIDV KVVTGDTSGTAREIARQIGLWDDSQDGENSIITGPDFAALSDEELLARVNELKIISRARP MDKKRLVEALQNNGHVVAVTGDGTNDAPALRAAHVGLSMGDGTSVAKEASDITIIDNSFS SIGKAVMWGRSLYQNIQRFLLFQLTVNVTACLLVLCGAFMGTESPLTVTQMLWINLIMDT FAAMALASLPPSESVMKDKPRDRNAFILNSPMLREIIGVGSFFFALLLVLLYIFQRTDVT QLTDLLTMQLGTKGHVSAYEQTLLFTIFVMTHFFYLFNARAFETGRSALHFKGCRGLLII VAIILIGQVAMVEVPGLQQFFNVTGLKFIDWVIIVIASSLVLWVRELWHLLTKKKS >gi|228307224|gb|ACLR01000183.1| GENE 33 39615 - 41609 2478 664 aa, chain - ## HITS:1 COG:SPy2082 KEGG:ns NR:ns ## COG: SPy2082 COG2987 # Protein_GI_number: 15675840 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Streptococcus pyogenes M1 GAS # 9 659 17 667 676 1016 71.0 0 MKRTCKFTLDATLPKYPTFEEGIRRAPDRGYSLTPAQTRVALQNALRYVPKELHAELAPE FLKELKERGKIYAYRYRPEGDLKAGPIDSYKGKCIEGKAFQVMIHNNLSHAVALYPYELV TYGETGQVCQNWLQYRLIIKYLEELTQDQTLVIESGHPLGLFASHPSAPRVIITNSMMVG LYDNIKDWEIAAQMGVANYGQMTAGGWMYIGPQGIVHGTFNTLLNAGRQQLHIPSGGNLA GKLFISSGLGGMSGAQPKAADIAGATSIIAEVDMSRIMTRHNQGWVKHIAETIPEALKLA EQGMKAGEPCSIAYHGNVVDLLEYCVEHNIHVDLLSDQTSCHAVYEGGYCPVSLTFEERT DLLAHDRERFCQEVDKGLHRHYEAVKALVARGTYFFDYGNAFMKACFDAGIQEISRNGVD DKDGFIWPSYVEDIMGPELFDYGYGPFRWVCLSHNHEDLIKTDHAAMECIDPDRREQDRD NYIWIRDAEKNQLVVGTEARILYQDAAGRLKIALKFNDMVRRGEVGPIMIGRDHHDVSGT DSPFRETSNIRDGSNVMADMAVQCFAGNCARGMSLVALHNGGGVGVGKAINGGFGMVLDG SRRVDEILRQAMTWDVMGGVARRAWARNENALSTSREFNEEHSDLYHITIPFLVDDALLD EVLK Prediction of potential genes in microbial genomes Time: Fri May 27 10:10:26 2011 Seq name: gi|228307221|gb|ACLR01000184.1| Porphyromonas uenonis 60-3 deg1118640599747, whole genome shotgun sequence Length of sequence - 545 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 10:10:26 2011 Seq name: gi|228307220|gb|ACLR01000185.1| Porphyromonas uenonis 60-3 deg1118640599481, whole genome shotgun sequence Length of sequence - 577 bp Number of predicted genes - 2, with homology - 0 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 160 157 ## + Term 178 - 211 -0.9 2 1 Op 2 . + CDS 228 - 458 72 ## Predicted protein(s) >gi|228307220|gb|ACLR01000185.1| GENE 1 2 - 160 157 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no NRVSPRRSEQILPNFDFVLPNFHFILPNFHFSAPWETFVFSLAMWQFLREDR >gi|228307220|gb|ACLR01000185.1| GENE 2 228 - 458 72 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVFGRFYKSFRLHTEGGHAY ALAEPSSRVTNEKRHP Prediction of potential genes in microbial genomes Time: Fri May 27 10:10:36 2011 Seq name: gi|228307217|gb|ACLR01000186.1| Porphyromonas uenonis 60-3 deg1118640599479, whole genome shotgun sequence Length of sequence - 552 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 132 58 ## PGN_1370 NAD-dependent nucleotide-diphosphate-sugar epimerase + Term 177 - 220 12.2 2 2 Tu 1 . - CDS 120 - 425 134 ## Predicted protein(s) >gi|228307217|gb|ACLR01000186.1| GENE 1 1 - 132 58 43 aa, chain + ## HITS:1 COG:no KEGG:PGN_1370 NR:ns ## KEGG: PGN_1370 # Name: not_defined # Def: NAD-dependent nucleotide-diphosphate-sugar epimerase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 43 276 318 318 88 83.0 8e-17 IAESWPNSLDDSCARREWDWQPHYDLDTMSQDMIQVLRARYGK >gi|228307217|gb|ACLR01000186.1| GENE 2 120 - 425 134 101 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVLGAFTKAFVSTRKVAMRT HLRSLPRESQMKSATPERTQEWRMWMRLCQSLGICADAYLP Prediction of potential genes in microbial genomes Time: Fri May 27 10:10:43 2011 Seq name: gi|228307213|gb|ACLR01000187.1| Porphyromonas uenonis 60-3 deg1118640599685, whole genome shotgun sequence Length of sequence - 692 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 194 - 370 86 ## gi|228471043|ref|ZP_04055883.1| hypothetical protein PORUE0001_1973 Predicted protein(s) >gi|228307213|gb|ACLR01000187.1| GENE 1 194 - 370 86 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471043|ref|ZP_04055883.1| ## NR: gi|228471043|ref|ZP_04055883.1| hypothetical protein PORUE0001_1973 [Porphyromonas uenonis 60-3] # 1 58 1 58 58 79 100.0 9e-14 MSKTNKNKDVDPDTQNSSGKRSPQSSPLPAESKALVNKTLLEVVLNRYHIDLKKKTDL Prediction of potential genes in microbial genomes Time: Fri May 27 10:10:48 2011 Seq name: gi|228307211|gb|ACLR01000188.1| Porphyromonas uenonis 60-3 deg1118640599645, whole genome shotgun sequence Length of sequence - 525 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 296 152 ## gi|228469759|ref|ZP_04054722.1| conserved hypothetical protein - Prom 321 - 380 3.1 Predicted protein(s) >gi|228307211|gb|ACLR01000188.1| GENE 1 2 - 296 152 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469759|ref|ZP_04054722.1| ## NR: gi|228469759|ref|ZP_04054722.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 98 63 160 192 176 98.0 5e-43 MTQLQPRAREAKFLGAYDGQLSLTDVSPHKGLREQEALAFVDYFNSKLATKQANIPALRS LQGSRLAELNARLREYGADALLEAVDNLVSSEMLNGQN Prediction of potential genes in microbial genomes Time: Fri May 27 10:10:53 2011 Seq name: gi|228307210|gb|ACLR01000189.1| Porphyromonas uenonis 60-3 deg1118640599554, whole genome shotgun sequence Length of sequence - 508 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 506 324 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228307210|gb|ACLR01000189.1| GENE 1 2 - 506 324 168 aa, chain - ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 2 128 88 209 227 81 39.0 6e-16 YSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQMTDYEA SLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALYNTARPH RALNKKTPMQMRIPDYPNPLTTQPSKKQTSKNNSPTAPSLKTPSPCRL Prediction of potential genes in microbial genomes Time: Fri May 27 10:10:54 2011 Seq name: gi|228307208|gb|ACLR01000190.1| Porphyromonas uenonis 60-3 deg1118640599515, whole genome shotgun sequence Length of sequence - 660 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 52 - 450 463 ## gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 + Term 466 - 519 18.5 Predicted protein(s) >gi|228307208|gb|ACLR01000190.1| GENE 1 52 - 450 463 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471453|ref|ZP_04056240.1| ## NR: gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 [Porphyromonas uenonis 60-3] # 1 132 291 422 422 271 100.0 1e-71 MALITEDPSFLLKDRKEVEVPQEFIKRVTLFSFNAFAGLQVPLDLKSVYVIPSLSGCVTG DLHSDYSLISAGPLVRCDFGIPLKYGNMLFFGAGYKYGFPIKDADEMAADNYKNVTPYGQ SHTVFLSIGYMY Prediction of potential genes in microbial genomes Time: Fri May 27 10:11:01 2011 Seq name: gi|228307204|gb|ACLR01000191.1| Porphyromonas uenonis 60-3 deg1118640599587, whole genome shotgun sequence Length of sequence - 576 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 349 397 ## gi|228471051|ref|ZP_04055887.1| conserved hypothetical protein 2 1 Op 2 . - CDS 410 - 574 56 ## gi|228470408|ref|ZP_04055310.1| putative membrane protein Predicted protein(s) >gi|228307204|gb|ACLR01000191.1| GENE 1 1 - 349 397 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471051|ref|ZP_04055887.1| ## NR: gi|228471051|ref|ZP_04055887.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 116 1 116 116 146 100.0 4e-34 MKRIFLLLTLLLNSLLTLSAQTYIYSGDKRYDYDSRVIATWDGSRLYSGDKRYDYDSRVL ATWDGTRLYSGDKRYDYDSRVIATWDGTRLYSGDKRYDYDSRVLATWDGTRLYSGD >gi|228307204|gb|ACLR01000191.1| GENE 2 410 - 574 56 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228470408|ref|ZP_04055310.1| ## NR: gi|228470408|ref|ZP_04055310.1| putative membrane protein [Porphyromonas uenonis 60-3] # 1 54 291 344 344 101 100.0 2e-20 LTAFGVSEAEAGQFALIVHAVQTLWTISVGVIAILLLPIINRRYKREKEYTVKG Prediction of potential genes in microbial genomes Time: Fri May 27 10:11:21 2011 Seq name: gi|228307174|gb|ACLR01000192.1| Porphyromonas uenonis 60-3 ctg1118640599653, whole genome shotgun sequence Length of sequence - 41601 bp Number of predicted genes - 32, with homology - 29 Number of transcription units - 11, operones - 9 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 690 - 2381 1358 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 2 1 Op 2 . - CDS 2359 - 2781 350 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) 3 2 Op 1 . - CDS 3000 - 3242 350 ## gi|228471063|ref|ZP_04055898.1| hypothetical protein PORUE0001_0530 4 2 Op 2 . - CDS 3303 - 3506 417 ## gi|228471059|ref|ZP_04055894.1| hypothetical protein PORUE0001_0531 5 2 Op 3 . - CDS 3532 - 4863 1070 ## gi|228471074|ref|ZP_04055909.1| hypothetical protein PORUE0001_0532 6 2 Op 4 . - CDS 4877 - 5521 504 ## gi|228471071|ref|ZP_04055906.1| hypothetical protein PORUE0001_0533 7 3 Op 1 . - CDS 5644 - 5958 536 ## gi|228471055|ref|ZP_04055890.1| hypothetical protein PORUE0001_0534 8 3 Op 2 . - CDS 5979 - 6404 512 ## gi|228471064|ref|ZP_04055899.1| hypothetical protein PORUE0001_0535 9 3 Op 3 . - CDS 6424 - 6582 115 ## 10 3 Op 4 . - CDS 6642 - 7532 193 ## PROTEIN SUPPORTED gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 11 3 Op 5 . - CDS 7559 - 7732 112 ## gi|254881916|ref|ZP_05254626.1| predicted protein - Prom 7768 - 7827 4.2 + Prom 8104 - 8163 6.3 12 4 Op 1 35/0.000 + CDS 8406 - 10181 251 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 13 4 Op 2 . + CDS 10185 - 11915 229 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P + Term 12079 - 12119 3.4 - Term 12065 - 12109 10.5 14 5 Op 1 . - CDS 12133 - 12729 729 ## BF0176 hypothetical protein 15 5 Op 2 . - CDS 12719 - 13990 1720 ## COG0126 3-phosphoglycerate kinase 16 5 Op 3 . - CDS 14026 - 16272 2803 ## PG0759 TPR domain-containing protein 17 5 Op 4 . - CDS 16291 - 18042 2301 ## COG1109 Phosphomannomutase - Prom 18151 - 18210 1.8 + Prom 18012 - 18071 3.4 18 6 Tu 1 . + CDS 18318 - 18575 225 ## + Term 18617 - 18643 -1.0 - Term 18416 - 18465 1.3 19 7 Op 1 . - CDS 18646 - 25632 7779 ## Caka_1781 protein of unknown function DUF1555 20 7 Op 2 . - CDS 25658 - 26767 1168 ## BT_1490 putative surface protein - Prom 26795 - 26854 2.5 - Term 27197 - 27243 6.4 21 8 Op 1 . - CDS 27259 - 28710 1409 ## COG3291 FOG: PKD repeat 22 8 Op 2 . - CDS 28722 - 30113 1381 ## COG1073 Hydrolases of the alpha/beta superfamily 23 8 Op 3 . - CDS 30142 - 30720 702 ## COG0817 Holliday junction resolvasome, endonuclease subunit 24 8 Op 4 . - CDS 30717 - 31046 541 ## gi|228471076|ref|ZP_04055911.1| hypothetical protein PORUE0001_0549 25 9 Tu 1 . + CDS 31140 - 31388 136 ## + Term 31398 - 31439 1.1 - Term 31476 - 31513 -0.9 26 10 Op 1 . - CDS 31531 - 33291 1913 ## PG2136 hypothetical protein 27 10 Op 2 . - CDS 33298 - 35313 1711 ## PG2135 putative lipoprotein 28 10 Op 3 . - CDS 35339 - 36658 1113 ## PGN_0183 minor component FimC 29 10 Op 4 . - CDS 36690 - 37637 1077 ## PG2133 putative lipoprotein - Prom 37661 - 37720 6.0 - Term 37784 - 37835 12.4 30 11 Op 1 . - CDS 37853 - 39022 1512 ## PGN_0180 FimA type I fimbrilin 31 11 Op 2 . - CDS 39068 - 40522 1742 ## PG2131 60 kDa protein 32 11 Op 3 . - CDS 40556 - 41134 617 ## PG2130 hypothetical protein - Prom 41338 - 41397 3.4 Predicted protein(s) >gi|228307174|gb|ACLR01000192.1| GENE 1 690 - 2381 1358 563 aa, chain - ## HITS:1 COG:PA1496 KEGG:ns NR:ns ## COG: PA1496 COG1226 # Protein_GI_number: 15596693 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Pseudomonas aeruginosa # 49 251 48 241 283 82 30.0 2e-15 MGRIKQFKHQLGRVFDTNLETKQWGNYVDYTIVGLIVLSTLSVFISTFDISESWERVLHV IDVVTVIIFTIEVSLRIWTADELSPKYHGFWGRVRYCLTFYGMIDILSTYTFYLALFLPL PYQVLKSLRVVRVLRIFRYMRSFRLLQQAITSKSKEILISLQFLLVVTLMLSFVLFFYEH EAQPETFNNGMTSVMWAFAQYIGDPGQFAETPPVTPVGQAVAFAVGILGIALFAIPAGLV GAGFSETLEEEVHKETIKKNTEKMFSAFERKLDRPTGFQIVPQHLSICDLQARIGLKVGD ILDVVDEADNFRLINLATTQTIDERPQDKLAVEHFIVNKPYGYYINRGSKVTIISPSSLA DAAIGNFSYYLALIGGFNYISRELGEMRPYKSYYSFDNRQVEPNLTQYMEDLEELSSRPG SWTLTPLVASGANEPSYPTIFHFSAGGAKGDESFTGDNLIVQDMDGYQAFYQDLTAELER RFEMTSDHQRYHNLTSPRLFARHFSEGRGSRNNIVLRIAWSACLWDSRRIAIAKTIADAL NRHFESDIDKEYSPELKIKRSGY >gi|228307174|gb|ACLR01000192.1| GENE 2 2359 - 2781 350 140 aa, chain - ## HITS:1 COG:SA2482 KEGG:ns NR:ns ## COG: SA2482 COG2039 # Protein_GI_number: 15928276 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Staphylococcus aureus N315 # 2 134 66 199 212 102 39.0 2e-22 MLGQSGGSDRIKLERIAINLMESKLPDNDGYLPNEETIYTDGASALFTNTSIKELRTTIE QLGIKVKISNSSGLYVCNRLYYEALSITQSRPSTQALFVHLPYYEGQPSAKPARPTMPLA DMVQAIVAIIKRISGTHQAV >gi|228307174|gb|ACLR01000192.1| GENE 3 3000 - 3242 350 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471063|ref|ZP_04055898.1| ## NR: gi|228471063|ref|ZP_04055898.1| hypothetical protein PORUE0001_0530 [Porphyromonas uenonis 60-3] # 1 80 1 80 80 76 100.0 4e-13 MSKEHYKKKIIDLRASIAREREQKKRDNEYYASRIRSASSPSSKASYRKSKIDKSAYHDR KIENYKSQIESAKASLKRCK >gi|228307174|gb|ACLR01000192.1| GENE 4 3303 - 3506 417 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471059|ref|ZP_04055894.1| ## NR: gi|228471059|ref|ZP_04055894.1| hypothetical protein PORUE0001_0531 [Porphyromonas uenonis 60-3] # 1 67 1 67 67 122 100.0 6e-27 MAKKTVTTGEYILNKLDNGSITVYRVYDNVKGALREIAEQEGFEYDNDWTTRQFGSKLMS FLEDREG >gi|228307174|gb|ACLR01000192.1| GENE 5 3532 - 4863 1070 443 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471074|ref|ZP_04055909.1| ## NR: gi|228471074|ref|ZP_04055909.1| hypothetical protein PORUE0001_0532 [Porphyromonas uenonis 60-3] # 1 443 1 443 443 827 100.0 0 MKGLLQILYGGLLLCTLLTCVGCGQGNKKDAELDKISELEQMKYDNISQKLDLLCSKAQS AHSDLDLQTIYTELSQIEYDYNPDGMGERAQQKCQQLKDRLAVLQASPSSLQQISSSNEA STSESRPSASKGLISRRHMKVDAVKRYPYYFKSQDQLHISVTPHGSARVSLFDINRQKRL KQWHVQSTLEEQVTIPSDGIYMIELRPDGGELITDISLSYEGADNNKRPRVSERTVSCKQ GDFLAEATASVRVSTVFKEPKKVGLRGNLKSIFSGKSRALISVPVPAGSDAILYYLRIST NEKTAPSDGKFADNLSLASKQIKILGIKVYEKRTLSSSVIDRLLFNTRPPREEDAFCNMY VLTDATQAKKFQDETASSGHYKYAVEQSQMGTQSCNGELKPKGRKTLYLGFENERMRYDN YIWLEVASLTHTKEYTRPVYFTR >gi|228307174|gb|ACLR01000192.1| GENE 6 4877 - 5521 504 214 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471071|ref|ZP_04055906.1| ## NR: gi|228471071|ref|ZP_04055906.1| hypothetical protein PORUE0001_0533 [Porphyromonas uenonis 60-3] # 1 214 1 214 214 393 100.0 1e-108 MSTKKIIIYAVLALLGFVFIGNVISTACSSSAVKQFKKALEDGNLSEASKYIEQIDDSSD KERCALRLIRVYLELDNSKQAIYVYEVLTPYHEGRDNISYSFNVYERDACKLLRDYLVKH GDYETAWNYYPLKSLDENYIGNAPCLYDYMNDVVVAMCAAGRQDEASQFVRSKLSWFATY VDASSSQYASEYAAFQSNQVRERLEQLIDESYNY >gi|228307174|gb|ACLR01000192.1| GENE 7 5644 - 5958 536 104 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471055|ref|ZP_04055890.1| ## NR: gi|228471055|ref|ZP_04055890.1| hypothetical protein PORUE0001_0534 [Porphyromonas uenonis 60-3] # 1 104 1 104 104 172 100.0 7e-42 MADFRIDSRMKVKTLKANFKKEFGATLRVYTTENCKAMADDEATIGSLMTSSAKGGVLTV GGNLRVGNFEKKIAELYGVGVQVANAKNTELSSDNITLVAAGKK >gi|228307174|gb|ACLR01000192.1| GENE 8 5979 - 6404 512 141 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471064|ref|ZP_04055899.1| ## NR: gi|228471064|ref|ZP_04055899.1| hypothetical protein PORUE0001_0535 [Porphyromonas uenonis 60-3] # 1 141 1 141 141 214 100.0 2e-54 MKSDIKNVAAFLAVAIWADGVYSEEENDMLTDIAEALDVDSASLIQQVQEAVNTLEGKDD DAVQEYLINNASAIEEDETKRLLQCAIEIVMADNVITVDEVQVLFDLADAMGGEVEHADV TLMLLDLVKYSPEIEVEFQPY >gi|228307174|gb|ACLR01000192.1| GENE 9 6424 - 6582 115 52 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAVKRTKSGKIDKRTKEGKAMLENLAKARAAAARKRRQEDASLLRRIKRMLK >gi|228307174|gb|ACLR01000192.1| GENE 10 6642 - 7532 193 296 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163756109|ref|ZP_02163225.1| 30S ribosomal protein S1 [Kordia algicida OT-1] # 176 291 221 343 347 79 32 4e-14 MDKIKVFGKAQNRTALGIVHAYMIMYPHATLADLRKAFPNELNPDKGVPETFIYADEKGT TANWNGYFKAPDELLTTGDGKKVALVSMWTKPSFEKIVRHATQYDIVVAEFEKAGRVGEK GGFRLEYLNGYIPPVAKKKGLPWWLWLIIALLLIGGIVAFFLLRKPKVVEVEKVVTVEKV VYRDRVEKIEKDFNAAKFVQGKADLTDEAKFVLHDLAKLMEANPDLKLKIEGHTSEEGDE AFNQRLSEERAQVAVDFLISQGISADRLQAEGKGSSEPIDPSNPDVNRRTEFIVIE >gi|228307174|gb|ACLR01000192.1| GENE 11 7559 - 7732 112 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|254881916|ref|ZP_05254626.1| ## NR: gi|254881916|ref|ZP_05254626.1| predicted protein [Bacteroides sp. 4_3_47FAA] # 3 57 20 74 74 69 65.0 5e-11 MGRKRSTPIPGLSFSWQRAVGVTKLRQRVSRRTGIPTSKSGLNQKIGRGILKKLFGR >gi|228307174|gb|ACLR01000192.1| GENE 12 8406 - 10181 251 591 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 351 577 135 360 398 101 33 8e-21 MRQSNNQSLGALGRLGRSMGSKRPLAYLGLVCSAVAHVVALVPFIFIWLILRELLGGSVD SGAITRWAWLAVGAGLLHILLYGLALMLTHVAAFRVERTLRGDAMRRMLEMPLGFFDQQN LGKLKNVIDDNVGLTHTFCAHQLPDLVGTLVCFVTLCVMMFVLEWRMALLCLIPVLIQLL AMGSMMTNKAYRESMGAYMNHQQRMSSEAVEYVRGMPVVKAFQQSIYSFNAFHQTLLDYA KWAKVYARSCRRMFSIYTVASFGYAFILVPFAYYLLSRGEDMVGVVSSLVFFILVTPFIG ECTMRLMYVVSGKREAVQALDRLDALCDASTEAKGSTPLSLSSHTIQLEGVSFRYSPEAP LAVSDVTLTIPEGACVALVGASGSGKTTLARLVARFWDVETGRITIGGEDISQVAVEEVL RHISFVFQNERLFKKSIRDNVAYGSAEATDEEIYAALDKAHCLELVRSLPHGLDTVIGSK GVYLSGGEQQRIALARAFLKDAPILLLDEATSFADPESEHAIQESLHRLMAHKTVLMIAH RLSSVVNADLIVVMQQGRIVEQGTHTELLARTNGLYASMWQEYQESIKWTI >gi|228307174|gb|ACLR01000192.1| GENE 13 10185 - 11915 229 576 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 338 559 131 352 398 92 33 3e-18 MKHLNLINWMERKMALSPRGAHNFLSACLWTGVQNLSFMLPVMLVYLLMMELFGESRDLT LWALVGMALLSIIGMYLITRRQYNSTFLAVYSESATMRIRLAEKMRRLPLSFFDRHDASD LTSRVMSDVSFLENAYSHTLPQMVASFIVLILAGCGLASLDWRLALALFWAAPVSLLILW GCLASQKRSFVKASKSQLSVSEKVEEGLQLHQTIKAYGGETLYMTELDAVLASHERTSFN TELASFVVVNGLRSLLQLAIPTLVVVGSHLYLAGEVSLGILLFFLLISVSVYTPLTMLMA NALVTLFASVRIDRMNEIYNMPTQEGRTDFAPKSFDLTFEDVSFSYNEGAQVLNHVSFTA KQGEVTALVGPSGGGKSTCARLASRFWDCQSGTVSLGGEDLTAVDPETLLKYYAIVFQDV VLFNNTVLENIRVGRKEATDAEVLEAARLAQCDDFVARLPEGYQTQIGENGSRLSGGERQ RISIARAILKNAPIIILDEATASQDAESETHIQRALSQLTTDKTVLIIAHRMRTIRNADR IVVLSGGTVAASGTPDELYDVPGYYRTACDLQQVES >gi|228307174|gb|ACLR01000192.1| GENE 14 12133 - 12729 729 198 aa, chain - ## HITS:1 COG:no KEGG:BF0176 NR:ns ## KEGG: BF0176 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 14 193 1 173 176 110 37.0 2e-23 MASNMGQDASATPLVSLVRMTRCDLCNETHQHHLPTLRQLYEEAFPHSERRPWSDLEQLI GAQGAYQFFLLEHPELGVVGFITLWHFDDFYYGEHFAILPQLRNHRLGEQTLQTVKEYIG REPIYFEVEPETLSEIAGRRINYYERNGFQVVKRDYLQPPYHREEQGVPLYIMSSELGER DFIERVCQTLIDQVYPHF >gi|228307174|gb|ACLR01000192.1| GENE 15 12719 - 13990 1720 423 aa, chain - ## HITS:1 COG:BH3559 KEGG:ns NR:ns ## COG: BH3559 COG0126 # Protein_GI_number: 15616121 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Bacillus halodurans # 3 418 5 392 394 360 47.0 3e-99 MTNIHQFDFSGLRALVRVDFNVPFDDKGQITDDTRMRAALPTLRKILSDGGSVIIATHLG RPKGRDPKLSTALIVPHLKELIHVPVIHCPVSRGAQAQEMAQALQSGEILVLENVRFEEE EEGKLRNADQYTDEEALKAAKADLKERQKAYAKEMATLADVYVNDAFGAAHRAHATTALI AQYFAADKKMFGMLMLQEVEAVQRVLHGAKHPFTAILGGSKVSSKIDIILNLMDKVDNLI IGGGMAYTFVKAQGGEIGRSLCEEDKIDVARDIMERAKAKGVRLLLPVDTVATCDFANDA PAETFPTNQIPADRMGMDIGAQACADYREVILTSKTILWNGPAGVFEFDNFARGSEAIAK AVAEATRQGAYSLVGGGDSVACINKLGLGDEVSYVSTGGGALLEAIEGKALPGIVAIDPN YGK >gi|228307174|gb|ACLR01000192.1| GENE 16 14026 - 16272 2803 748 aa, chain - ## HITS:1 COG:no KEGG:PG0759 NR:ns ## KEGG: PG0759 # Name: not_defined # Def: TPR domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 39 664 48 644 717 90 24.0 3e-16 MVTDDIYRLISEHQIAQAVKLLGEQMQSHVRIPVEQRDRYHSAKRILETMLQYLESPIQD PELVTNYSYLLRTLYEVTDALRDTEWVAQSPQYEKQSNYYALLLDNGGLAMVVEQLTLQS NLATVDRPRYDELVKRLTMGLLYTQEWSDEVATSLDQLDDYIQQAALTAVTLALLRSWHW GKLCWLLAKLMETRGEQTMVRIRAVVGVLLVGELYSSRLALYEEQLPYKPQQISEAITLE EYDMIWSHRLRMKYTPQVVEYVQKLFGRFNSPEFQQRFQEIISSTGDREEPATFESVFGN EEELLPLVGDVQEGYEALKRLVARGFDVNAFATSSLLQGPFFEDEAHWLVPFDLQHSSLG AVMAQFSNEYQLGEDQIMTLLRESIFQQVDIDFYGSIFRISQLPGQVLQGISQGVLAMEN VINRTPYIRPQERRTLEADDYTKALQGYICQLARIFTFIEAKVAAKTPFMMHFGQPNPFA QAQSEQLCDKHLDLLRAYCVQTKEYAGEQAAIQFQLGRTSEPEARAQLMYRLAQTYYEEQ KYMQAYFVMQQIPPQLLSGDTSPLFIAQILYRMEQPMLAISLLEQVRQQADPERPSLAIS RLLGVLYVKLRIYDKALPLLLQCEFEDEHPDTLYPLIAWCLMMTQRWEEAKAYASRSVTS YDQLGKDSLELQYKEFVPLLPALFTLVGGDLQGTLQALGKLLASADEQQQKRFISAYGEC MYDLRQLGVPSHLLELIQTWLHQRINTF >gi|228307174|gb|ACLR01000192.1| GENE 17 16291 - 18042 2301 583 aa, chain - ## HITS:1 COG:CAC2337 KEGG:ns NR:ns ## COG: CAC2337 COG1109 # Protein_GI_number: 15895604 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Clostridium acetobutylicum # 13 553 4 547 575 434 41.0 1e-121 MATLSPELIQQAQERAKQWLEPAFDSETRQQVEALLAAEDKTPLVEAFYQVLEFGTGGLR GIMGAGTNRMNKYTVGMATQGLANYLLQCFAGEEISVAIGYDGRNNSPFFAQTTADVLTA NGIKVYLYDALRPTPMVSYAIRQLGCKSGVMVTASHNPKEYNGYKVFWSDGAQIIAPHDK AIVNEVKSITDIDQVKWQGNPALVEMIGAEMDDRFIHDVCALSLSPESVQRHSDMAIVYT PIHGTGVRIVPRALEAFGFKNIIHVPEQDVIDGNFPTVISPNPEEPAAMKLAMERAEATG ADLVLASDPDGDRIGVAVRNEQGELHLINGNQICALLTYYTIARRKELGDLRPDDFVVKT IVTTELIPTIAKDYGVECMDCYTGFKWIANEVREQEGKRRYIGGGEESYGYLWETFVRDK SSVSACSIFAELTAWALDKGLTIDKLLEKIYNEHGYFLEKGISVVRKGIKGAQEISQMMV DYRSNPMKELAGSPVVKILDYQSLEGKCLKSGETFPIKMPATSNVLQYHTADGTVLSIRP SGTEPKIKYYIGVTYKRGTDPACDNPEQLLRDRIQAIREQLSI >gi|228307174|gb|ACLR01000192.1| GENE 18 18318 - 18575 225 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLRKNEIKVPKNFLIPPWTMAVPYGGKISFLGGQISFLRRKRKCPTEEKKVSKRGMILE NLDSVPYCRLWREFGAGRRAPRTKQ >gi|228307174|gb|ACLR01000192.1| GENE 19 18646 - 25632 7779 2328 aa, chain - ## HITS:1 COG:no KEGG:Caka_1781 NR:ns ## KEGG: Caka_1781 # Name: not_defined # Def: protein of unknown function DUF1555 # Organism: C.akajimensis # Pathway: not_defined # 1947 2143 57 245 265 73 28.0 1e-10 MQRTVTTTLLLLCWLLLPPIVWGQEDKTLLMPTSIYGNNEHKVGDTPLILYDSGGADGNA QANKAGKIVFMPEQAGKCIEIEIQELALANQDELYILEGSAPFSDWLTPNEKLVIRKFAK ADRPTLPLKLRSSDKSGKLTIGSKTKANPGAGFKIIVRTVDQPAIKITSILEDKSASHDP YIGEQSLIVSNLKITTEGLAKAPKLTALHYKLSNTKPSDITAIYLYEVNSRKPKQLDADK LLGKTTEVSAEGTITLSKEYTLSEPNYDLVLVVDLKSDVAAGSRIDVATTKLTTTLGDHA VTLQEPKPLTVEDAYALAKTPKTYTVGDKSLTLYDDGGKHEPISEKFDGYAVFKPETAGK VIQVDFTKLDLFSYSSIGRADLVEVYNGSEVNADNLIIKLNKEKAYKATSTASDGSLTIR LVTNAGTPKAGFEALVSQIAPLPMAVDSLSGRTIEVDTFAMPINASVKQVGMVAFTLVAQ GTKDPVTLQRLDLSSISKTTDIAQVALYYSPIVDDFTKAKEIAHWDFAQALTATLPTPQA LREGANHFYLVVDLQETANKGGKINLSIDKIHLSAGEKTLPEKERTRTEALEVMNKMVLT LGKHHVKVYEPWDFTPQLKHSLTTGYDTDAGERSVTFEATAPNNVIQLDINEWDFYYSSW GSKPTLRIYDGEDATAPLLFELKPDREAFKTKPSDYIRSTQKYLTFVFDAKGGSGSLGWR GQVKQYLPQDMKVDSAAAKQIELPFIAVGSELNPVLALDIHTIGDRKPIHMDGLTVDLKG GAPQIKRVALYATTAEGTLEANKLIAEAQVEPTMQSVDLPADALAKNGTLKEFANNYILA IDIRKDAPLTESIDVAIAKLTVSGKPITVRDADPKGSYKLVNIFNHPASGDNKEVTVTTP LSYYDEGGPDGKVLKNTGSYVTFLPSHEGEVVTLTIDSINLRRATFGIYSGRDHKNESKL LSTGDNNILKQTGVRTFTSQEQDGSLTVYFKGSDTYTFGWAARVESVKPRDLFVEKVSAT ALPVDKQGVLSGSSLPAVRIDLTTAGEKGKTTLEKLQLEISSEGIEELALYATGAISEFD EAHLIATAKPQATQTEVIFKFDPADILKLPRTQYYWVKAQLAGDLKVGTPISVTAKSVTI GGAKYDVKQEKPFDTKTRKGGLQGTLRVGSSSAASYKSLAAAAKDLTKQGVSGAVTVEVE PGEYPEAVLLERIPGVSAKNSITIVGLGNTRDEVVLSANGYNKPTGDDAHRRAYGVMTVR NTPYVTLRNMTIHSTDLGFPTMVYVQENSSHFTMDNCHVYTKNTSNSNYNMSPSLVKVEG ASNPHAQSCDVLVENSLFEGGHIALQIGGTTTVANPVGKGYTVRNNRFVDHSGKAIYVTR ASEVLIEGNEMVQQIAPQRDYSGIDATFHTDAKIIGNDFDLTQPKAYKLSNLVGINVREV QGEGLLVANNVIRITRGSATSRAFAASKVTGLNFVFNTAIARDGKCTALLMLNNTIASSL ISDNILQNRDGGGILFSNQPLPNEQLTCDRNALYTSDSKGVLITAKGKKYDATNYQQATK STASKIVEVPFVSDKVLYPKDMTVLPQGAPHAAITTDILGTARDKEHPTVGAYEQDPNVS NEAPKLTNKQVVRTLHQSATISVEPDQMTDVYLMTIVKGEKAPDAAAIRDKGRHFTALGK RTTEFTIMGLEPETTYEVYGLLHGTLNNKDAEPELLFTFTTTYMPTRVATFEKDNRTIEG DVVYSGTNSFAGVKVVEDFTRSRNQIAEMAGDKVTITVTNSKGKIPQRGFSLMADRPVYM RIDGGTRITLPATEQEWAYVDLAQRGDIHEVTLESRGKLWIDDYNGDALAMQLAIAPVTI NLGQQAQLTAEVIRGVAPYSYKWSQGDSLQTVSVTPTQTTRYSVTVTDAAGSQVTESVYV YVNGLHGEAMVATFEEEPLSSEEPYSQKAPFGSGSFAFSNSYNAEWNSWSGFALAASADT TYTGNFQTQQYNNVVGGGQEQEGKSKQYVVAYCPGDNPQWGSYNPVVTVMSGSDRKVQLE GVYLTNTAWVKSFATQGDKNYGRPAFKEGSFFIVTITADNGKKVEVPLIDYRNKKREVVN DWKWVDLSSLGEVKTLKFSIQSSDSYAPSYFAMDNLHIKQDASTKPAKEQIALEVVATTE STAQIRWQTLPTQVSYTVSYRPVGADASATQTMRLDPTQQLRSLELRDGYVYTTLEGLQT GTRYEVTVEATIMPAMQTVAQGKTTFTIQATAINAIDGETARVVATPEGILVIGLQGATV ELYTVSGAQIGRYQITEPEQLIAEQLQSGIYIVAAHKAGAVRTFRLIL >gi|228307174|gb|ACLR01000192.1| GENE 20 25658 - 26767 1168 369 aa, chain - ## HITS:1 COG:no KEGG:BT_1490 NR:ns ## KEGG: BT_1490 # Name: not_defined # Def: putative surface protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 24 284 390 659 663 199 42.0 1e-49 MRPIYSLVLHSLAYLLFLGVATLSAQESRITEVVAYHPAPGQFMGSEVMASKGVTTYQEL LQQAQRILVQDGRFLSLGGWGGYIIVRIQPALVNQPNQADFAILGNAFIGNAEPGIIYVS QDTNGNGLADDPWYRIRGSEDYRSNLDYAITYYKPKDPYNDPVAWSDSEGDSGLIPRNKY HTTNSYYPLWEGDKVTFSGVRLPDCMKQEHEGGLWESQPYAYGYADNHPNGSLGSYIDID SAVNAKGELVQLDRIDFLKVQTGVHQQTDETGEVSTEFAGIKPLAKGTSIISPTVATPAV HLFYSDNQLYVESEVTGTLYLYNIDGQLVLTHPLSVGSATVALPAMSDCYVALLRLEGGA FATYRICRQ >gi|228307174|gb|ACLR01000192.1| GENE 21 27259 - 28710 1409 483 aa, chain - ## HITS:1 COG:MA4289 KEGG:ns NR:ns ## COG: MA4289 COG3291 # Protein_GI_number: 20093078 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 24 417 587 1067 1734 218 30.0 2e-56 MSKIKMPKSGETGQLLWRYDPKDSSLTLSGTGALPDYPIGQAPWFEFNDQIDMIVLKEGV TRIGDYAFYNCTELTSVEIPEGVTYIGESAFACCQSLESVTIPGSVTEIGEGAFESCDSM LALELTSGLKCVGAFAFSECVALRELVLPDTVERIGRSAFAGTMALHELVIPGNVQEIGD NAFNGCIQLSSLTLSEGIRVIEEMAFSNCSDLTKVLIPASVERLGDGVFADCLAMEQISV APESEHYVVRDDILYSKDLSVLVHYPASKEEQEFTIPEEVRKIAGLAFASNYFLMEVMLG DHLEEVGSYAFARCSSLSFMSLPAQTTRLGVSPFHDCIMLLEIEVDPNNPCYSSIDGILY NKEQTQLIQYPAGLYDDDVYRIPDTVQEIAENAGYDAQDLEVLVIPESVRKIGDMAFAFC DKLRKVEIRVADPAQVEVGIMALFSVAGTARKLIVPKGSSKLYKKSESWLEFTSNIVEAK DKG >gi|228307174|gb|ACLR01000192.1| GENE 22 28722 - 30113 1381 463 aa, chain - ## HITS:1 COG:MA2933 KEGG:ns NR:ns ## COG: MA2933 COG1073 # Protein_GI_number: 20091752 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Methanosarcina acetivorans str.C2A # 34 463 46 494 496 235 36.0 2e-61 MTSTRKLLTLLCCYLCGVLLLSAQQATKQVAPLGIWEGTLQVSGTELPLRFNIFRDKQET IYCTMDSPSQMATGIEATIELADGIVITIPNLYVRYEGKLVSSDTIVGTFAQGGMSLPLT LVRASKPAKADRPQTPQPPYPYETEEVTFYNGTAPLHGTLTYPVGHQAGSRVEQVVLFVS GSGIQDRDETLAEHKPFAVLADYLARQGVATLRYDDRGYHDDIDSVGVAEATTATLADDA AAAINFLRSRKIFDKVGVLGHSEGGTIAFMLAARGIPDFIISLAGSTLPGKEVLQDQMDL ALTRAEVPEKLRAEYLRAAVATFDQAAQSDLRGEALVTKVLSEGHYQLPIGLVLDLKKVA DGLTPWLIYFTQYDPKGDIAQTHCPVLALNGSLDQQVLADKHLPVIEQSLPTGTPRQVCQ LEGLNHLFQHATTGAVSEYYQISETIAPEVLELIAEWLTKLTK >gi|228307174|gb|ACLR01000192.1| GENE 23 30142 - 30720 702 192 aa, chain - ## HITS:1 COG:VC1847 KEGG:ns NR:ns ## COG: VC1847 COG0817 # Protein_GI_number: 15641849 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Vibrio cholerae # 9 177 3 167 173 117 39.0 2e-26 MSKSRGERILIGIDPGTIVMGYGLLSVRGQHAEMLTMGVIELSRYEDHYTRLGRIYKRVA GLIDEFLPDEMALEAPFYGKNVQSMLKLGRAQGVAMAAALSRDIPIAEYVPMRVKQAITG TGQASKEQVATMLQRVLRIPAELMPEKLDATDGLAVAYCHFLQTSNAVATSNESAKSWKE FIKANPNKVHGL >gi|228307174|gb|ACLR01000192.1| GENE 24 30717 - 31046 541 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471076|ref|ZP_04055911.1| ## NR: gi|228471076|ref|ZP_04055911.1| hypothetical protein PORUE0001_0549 [Porphyromonas uenonis 60-3] # 1 109 1 109 109 173 100.0 3e-42 MYRVNVSFFLKAQEYALLDEFLRTRLVPLLRDDEGVAQVDLLEVMAQAPVVEMAQPMDDM VLALLISLEQERDLEHYLSEVLGERLELLGKTFGERVLYHVTPMREIAL >gi|228307174|gb|ACLR01000192.1| GENE 25 31140 - 31388 136 82 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDAWYRKGSSTGLSRKSKNSSVEIVDYPRRNGKILRNFEIFLPKFHFILPNFYFPVPWGI FICSLALLDFLGRISESTRLVE >gi|228307174|gb|ACLR01000192.1| GENE 26 31531 - 33291 1913 586 aa, chain - ## HITS:1 COG:no KEGG:PG2136 NR:ns ## KEGG: PG2136 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 21 583 16 551 554 322 37.0 2e-86 MTRTKIFLYFLLLVAFMALSACQQEQRTAPVDQDGERVTVSLSVDVPCYAPMRAMQEGID ENKIDRLELLVFNEAGLMADYALATNLTKVGDNQYTFTAQLKPQTEPCVIHFVANRNYGG SDSGRQYLGRKESDVLLSDLVTMAEVSQKKSIPMWARKSYSEVKENSNLGEIKLLRSMAK FTLESHTTKLADVSYTLCNSYDCGTVAPFKRAELPDLNEAFSVDNRVPTVPRETFLDNGD AGLGWYASGASIYGFERRNKVAKPISCLVIRAKYDGATDYSYYKLDFVKSANRLERYDLI RNYWYKMTIQDALAIGASTLDEALAGPAVNNLALSEELQAYPSYSDGKGRLEVEASNYII THGEQTLTFKANYYPEGSATAQNDKLQIVAVRNATDYNAIKGKGDVSIDNTTGQITATLQ PALIETSRISDIIVGVTGDPDLMRIVRVEVRKPYNYELFQVNGQPAVGNAVTANVHGQKG ALSFVITLPEDFRAQQLPMRLRFFTEHFYPDVTTEDGRMGKFSFGLAKDGANPVGRPCYT TIITKLPTDRTLRCTFLSNKSTCAETIEVVSVENLFDTQRVIVKAN >gi|228307174|gb|ACLR01000192.1| GENE 27 33298 - 35313 1711 671 aa, chain - ## HITS:1 COG:no KEGG:PG2135 NR:ns ## KEGG: PG2135 # Name: not_defined # Def: putative lipoprotein # Organism: P.gingivalis # Pathway: not_defined # 22 659 18 662 670 451 43.0 1e-125 MNRLIDISTRLVGYALILLMVSGCIAERPVACPDDDSSAQLSLRLAVQDIRSLRATEPGV EALNENKIESLQILFYSSGALYWSVSPAPSTDGNYSIPIPEDKQGGFDGNSTYDIYVVTN LTFTAPPQESDLAKIPVSESVAKLPNDKFVMQGKTSKQIDLKTPEGKQLGAVELRRVASK LRITPTVDITGYAVTGDIQVKFVGATDRGYLTAEESADGATPISYDYRATQDQQPQLFYS YYSNWSSDPDQAPYYLLTVPLKKEGEMTVVNNYYRVALTPAEPHFTANKLYDLKLGIHKL GSTTPEEPVAITGTLSILPWALCDDQYDLPAANYLEVSEKEAHIYNVETHTISYESSKKP VTPQIVEVSFSYVNGATGKAITKAIPTSSDQYPTVTVVGNQIKIQSKLPINNIPKKIRIK VSNGIAELDKEVTVYQYPSLFITHTMGTKSSLRPDGTLAHNGLNNKAIYRITVQNPPEGM ILGFPPRETTDFWPGYWNGSRWVLTGGNKISKLTTKRDAETAQMVSPSFELASQLGATEK WSYLEYGWTQDYSGWNLSWTRTNKIGAFDETALCDCALYTETRIVNGQEVTLGDWRLPTE AEIRLIDQLQNDPNSAVKSIMTGRYYWSAKSDAAIELQGGSSGSTREAFTRCIRDVKEPT IQSHVPYRLDR >gi|228307174|gb|ACLR01000192.1| GENE 28 35339 - 36658 1113 439 aa, chain - ## HITS:1 COG:no KEGG:PGN_0183 NR:ns ## KEGG: PGN_0183 # Name: fimC # Def: minor component FimC # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 35 416 51 436 462 262 43.0 2e-68 MKPYRPILTTLLALSALLLTVLSGCKRSELRETLEPATVQLSIPTMTLRGGELLVEDLPV QTIRILVFNKAGGALDAQQSFSSPTDLSDWLRVEAHEGAKDIYVIANESPAMSDALNKIV FKQDLLGMAIPDKDPSSVTEPQPMLLIGQGTATLTKDQKNEVTIALVRSRAKITLDLKQE TATDDQIIIRSVSISRLPKTSMLLTPASYHLGETWIYSNAEKVTLVNNATTTYIPDKTLY TYESLDSDTTGHAPILTVEALYNGVPTTYTAYVNDETSDADHHYALHRNHHYQLTGTITK IGAHNALLLKTEVLPWDVETSEKKLEVPKIVSITPSPTETYYVTDTEAAEFKVKISSSSD PSKWRATLTNALDFRFDITGGAVREGLADGTTEYTIRVIATKPAGVNLRCTQLLFTSEYL DLVGAGMPKEGIKICQKHA >gi|228307174|gb|ACLR01000192.1| GENE 29 36690 - 37637 1077 315 aa, chain - ## HITS:1 COG:no KEGG:PG2133 NR:ns ## KEGG: PG2133 # Name: not_defined # Def: putative lipoprotein # Organism: P.gingivalis # Pathway: not_defined # 1 315 1 303 303 238 40.0 2e-61 MNIVQRWINKTAITAWTVSMIALLSGCIAEDLEDCPQPFELTVRAVDISNKDITSDGDVE NVVLFTFDESGKRLDKILLNAKEIKARKPIHIEHYGPKSLTFVAWGNVTTADMARLESVQ RIEDVQMPLQRADGFGQYPTDLFSGRLDREQVYGKLELGKPATVDIYRRTCQVNVTVLGY EQWLNRQGYKRQAFDPTNYAAAQILFGKSLDNYSIVDTYGGNPTTYRLTGSLDSSTGDYH IAPFRVYPPIESKPFQLDFYVGDNCLESFTKDSRGTLLLPEIGKMLNVLIDMRSGDISVQ VVVTPWNVVHQFVIY >gi|228307174|gb|ACLR01000192.1| GENE 30 37853 - 39022 1512 389 aa, chain - ## HITS:1 COG:no KEGG:PGN_0180 NR:ns ## KEGG: PGN_0180 # Name: fimA # Def: FimA type I fimbrilin # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 389 3 383 383 254 44.0 3e-66 MKSKLFLLSLVALTLAFTACNKKDDVKSETDATISVAIKSADLRAYEDGAGTADMQVKTL AVMVYEGQAQVAYKEAATAGDLEVKDIETTAGTKTLLVVANFEGTDFQGKSLNDALAMTH ELGADDQDPAKGKHMLTSDATPVTLKKGKNFYGYADGDGNHISNDPMQLKHIHAGMSFTS VKVDFATQYKDLYNVKFDKGAIMALIAKKQSNVFGASLVNADPNYLYGEQHFGQADNKYT PKANYKEMAELKMAITEISETMTGKGFYVLENNSAEHPTILCIKGELTQKGGAALTADQA KEAVAAGWIVSETDHSTFYPVLVNWEKDGYTFTGTTDKKGIVRNNKYEISLTITGPGTNS PEEPTQEKANLDVMCKVTPWNIVKQEVVW >gi|228307174|gb|ACLR01000192.1| GENE 31 39068 - 40522 1742 484 aa, chain - ## HITS:1 COG:no KEGG:PG2131 NR:ns ## KEGG: PG2131 # Name: not_defined # Def: 60 kDa protein # Organism: P.gingivalis # Pathway: not_defined # 12 484 6 490 490 415 46.0 1e-114 MRHTICNMSLAWMALLMLCSLSTLSAQRQEMNPLQGIKSTSQTVVTRHGDKALVDFTLDL TEMTRLNSNTVLEVTPVLQSNADSNQLALPPILISGRTRAIMLRRKSIEADIIRSKHREQ SYQYTIEVPFALWMKDASCLLRAKSSGCAECDLGDYTASLTPNALAPLYQPTYRYAMLVP EGEETKRREESLTAMITFPVNKTNLNLNLGNNRAEVKRIDNKLQELTTNSALTVDALSLT GYASPEGSADLNQRLSEGRVESIAAYLVRTYPRFKNHYTSRAMGADWDGLRAAIEESSVD YKEQILQILQERPASERTAALRAIDNGKTYAHLLQTYYPPLRRTVITFSFVVKGFDLTEA KEVIKKHPTHLSLAEVNLVANSYPAGSAERYETWAIAADAFPNAVEPATNAAIMDFEAGR YAQAVKLLERYKKNTKLYTILGIAYAYNGQYDDARTYLTKAAQLGLPDAQYNLDEFLHYM QDNF >gi|228307174|gb|ACLR01000192.1| GENE 32 40556 - 41134 617 192 aa, chain - ## HITS:1 COG:no KEGG:PG2130 NR:ns ## KEGG: PG2130 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 2 191 4 191 193 212 55.0 6e-54 MKNRLISLLISLLATITWCTAQDVGIKTNFLYWGTATPNLGIEVRVAPRWTIDLSGGYNF INPINKETGLKWMHFSVLPEARYYLCEAFNGHFFGLHGLVGFYNVNRLNVPIGRLKRLKD YRLQGWGYGVGITYGYEWVLAKHWNLEASISAGYALFDYTRYNCEHCGKVVAKEKKNYFG PTKATLSLIYLF Prediction of potential genes in microbial genomes Time: Fri May 27 10:13:37 2011 Seq name: gi|228307169|gb|ACLR01000193.1| Porphyromonas uenonis 60-3 deg1118640599601, whole genome shotgun sequence Length of sequence - 642 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 640 574 ## Sfum_0670 hypothetical protein Predicted protein(s) >gi|228307169|gb|ACLR01000193.1| GENE 1 1 - 640 574 213 aa, chain + ## HITS:1 COG:no KEGG:Sfum_0670 NR:ns ## KEGG: Sfum_0670 # Name: not_defined # Def: hypothetical protein # Organism: S.fumaroxidans # Pathway: not_defined # 8 213 668 873 1024 71 30.0 2e-11 SLTKEGEGAITATGASNLNSVAYGTELTISATPAEGYELTALTANGTDILATKKIVVKDN LTVKATFTKKSFAVSLTKEGEGTISATGASNLNSVAYGTELTINATPAEGYELVSITAGG TDITATKKVVVTGNLTITVNLTKNNFAVSLTKEGEGTITATGATSLNAVAYGTELTIVAT PAAGYELVSITAGGTDITASKKVVVTGNLTVKA Prediction of potential genes in microbial genomes Time: Fri May 27 10:13:41 2011 Seq name: gi|228307166|gb|ACLR01000194.1| Porphyromonas uenonis 60-3 deg1118640599611, whole genome shotgun sequence Length of sequence - 591 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 147 - 590 644 ## COG3547 Transposase and inactivated derivatives Predicted protein(s) >gi|228307166|gb|ACLR01000194.1| GENE 1 147 - 590 644 147 aa, chain - ## HITS:1 COG:NMA0772 KEGG:ns NR:ns ## COG: NMA0772 COG3547 # Protein_GI_number: 15793747 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Neisseria meningitidis Z2491 # 3 136 182 314 321 66 32.0 1e-11 MLEIIKEDEEMYRHYLHLISCKGVGLVTSVMLIVFTDNFKGWSAKKMASYCGIAPFYESS GSSVFHKSNTGGYSNRRLKGILTQAARSAITHNPTFKQYYQRMKAQGKPYGVILNNVNNK LLHILFSLVAHDCDFELDHEAKRALRA Prediction of potential genes in microbial genomes Time: Fri May 27 10:13:41 2011 Seq name: gi|228307162|gb|ACLR01000195.1| Porphyromonas uenonis 60-3 deg1118640599534, whole genome shotgun sequence Length of sequence - 516 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 139 - 516 223 ## gi|228471086|ref|ZP_04055918.1| transposase IS3/family protein Predicted protein(s) >gi|228307162|gb|ACLR01000195.1| GENE 1 139 - 516 223 125 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471086|ref|ZP_04055918.1| ## NR: gi|228471086|ref|ZP_04055918.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 125 1 125 125 225 99.0 9e-58 EQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQS TMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKRPIC SRETA Prediction of potential genes in microbial genomes Time: Fri May 27 10:13:48 2011 Seq name: gi|228307159|gb|ACLR01000196.1| Porphyromonas uenonis 60-3 deg1118640599729, whole genome shotgun sequence Length of sequence - 664 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 378 396 ## gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 + Term 394 - 447 18.5 Predicted protein(s) >gi|228307159|gb|ACLR01000196.1| GENE 1 1 - 378 396 125 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471453|ref|ZP_04056240.1| ## NR: gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 [Porphyromonas uenonis 60-3] # 1 125 298 422 422 257 100.0 2e-67 PSFLLKDRKEVEVPQEFIKRVTLFSFNAFAGLQVPLDLKSVYVIPSLSGCVTGDLHSDYS LISAGPLVRCDFGIPLKYGNMLFFGAGYKYGFPIKDADEMAADNYKNVTPYGQSHTVFLS IGYMY Prediction of potential genes in microbial genomes Time: Fri May 27 10:13:55 2011 Seq name: gi|228307156|gb|ACLR01000197.1| Porphyromonas uenonis 60-3 deg1118640599574, whole genome shotgun sequence Length of sequence - 687 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 685 923 ## gi|228471091|ref|ZP_04055921.1| putative cell surface protein Predicted protein(s) >gi|228307156|gb|ACLR01000197.1| GENE 1 1 - 685 923 228 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471091|ref|ZP_04055921.1| ## NR: gi|228471091|ref|ZP_04055921.1| putative cell surface protein [Porphyromonas uenonis 60-3] # 1 228 1 228 229 419 100.0 1e-116 TAQGYKVDQWFINGQVQNQLTGRPFIFWQIKAKTEVKVTFRKEQMYEVDYKPDNEWGTIE AYYYDGGRKVTVEPKAKVKEGTFVEFQATVKEGYALDGWTNNGHEIPVADIETLKASLTL RANAVIDVKYHKLVVKHAVTFTAGEGGTIVATVGTEAKAIESKDQVEQGAVITFTATPKE GYELDHWMVGGKPAVAGADTKIEGNKLIVTLGDQDLKVEATFKKLIVK Prediction of potential genes in microbial genomes Time: Fri May 27 10:14:06 2011 Seq name: gi|228307151|gb|ACLR01000198.1| Porphyromonas uenonis 60-3 ctg1118640599635, whole genome shotgun sequence Length of sequence - 1601 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 1161 877 ## PG1476 conjugative transposon protein TraM 2 1 Op 2 . - CDS 1163 - 1366 278 ## gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 3 1 Op 3 . - CDS 1338 - 1601 210 ## PGN_0597 putative conserved protein found in conjugate transposon TraK Predicted protein(s) >gi|228307151|gb|ACLR01000198.1| GENE 1 3 - 1161 877 386 aa, chain - ## HITS:1 COG:no KEGG:PG1476 NR:ns ## KEGG: PG1476 # Name: not_defined # Def: conjugative transposon protein TraM # Organism: P.gingivalis # Pathway: not_defined # 24 386 51 424 453 135 28.0 3e-30 MDTNKTAPDKAKLKQWLVMGLIIIVFVGALYMILRPYLIKEDKIGNGQLLTDVPDADVAK LPEDKLSAYKGTGLVDLGEEQVDPRLQRLYDEQDRADDSAEYGTNRYPRNEDYDPYEDED LQSSQGLYAQFAREQEDQDRMARLEEQLADLEREKRDLADEREYLTQLGELKDRQIAATD IYSNAYRRATAEPEPAPEPPRDPNAPVSFDAVGAKTVDPSVVSTLSQSGRDASSQQAHEA LLQNRFTTSVGSLRSETIAKNTMRAIIDETKTIKLGDEVKMRLMEDIQIGSVVVPKGTTI VAKSTLTNNRLQLKVTSIEYRERIIGVDLSAFDLNGQEGLYVPVTAEAVGLKALGEGLAE TATGGISIQQSGKDQILANVSNGLIR >gi|228307151|gb|ACLR01000198.1| GENE 2 1163 - 1366 278 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469432|ref|ZP_04054443.1| ## NR: gi|228469432|ref|ZP_04054443.1| hypothetical protein PORUE0001_1914 [Porphyromonas uenonis 60-3] # 1 67 1 67 67 126 100.0 5e-28 MKQDVPPLDSVGTSSTQNKVGWVKKQTDRLKAWCDKLTPEERKRLTFISMGVYLAVFLLV ITISIFK >gi|228307151|gb|ACLR01000198.1| GENE 3 1338 - 1601 210 87 aa, chain - ## HITS:1 COG:no KEGG:PGN_0597 NR:ns ## KEGG: PGN_0597 # Name: traK # Def: putative conserved protein found in conjugate transposon TraK # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 87 122 207 207 102 58.0 3e-21 EYYNRLISTNTSQVLTVDSISCNFNTYPYEAVVYGTQTIYRKSNVTERSLVTACSLLNTV RSDRNPQGFLITKFRVINNETRRTTPR Prediction of potential genes in microbial genomes Time: Fri May 27 10:14:18 2011 Seq name: gi|228307149|gb|ACLR01000199.1| Porphyromonas uenonis 60-3 deg1118640599559, whole genome shotgun sequence Length of sequence - 607 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 291 334 ## PG1479 conjugative transposon protein TraJ + Term 425 - 460 2.0 Predicted protein(s) >gi|228307149|gb|ACLR01000199.1| GENE 1 1 - 291 334 96 aa, chain + ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 1 89 250 338 368 127 65.0 1e-28 KDIAALSDPNYLPDSGSWYYIVFFLIGIVGYFCVPTVAGWIIEAGGGIGAYGRNVNQTAQ RGAQGAYTGGKAVAGATGSMAGNVGGRIKGALIKGK Prediction of potential genes in microbial genomes Time: Fri May 27 10:14:21 2011 Seq name: gi|228307146|gb|ACLR01000200.1| Porphyromonas uenonis 60-3 ctg1118640599642, whole genome shotgun sequence Length of sequence - 1185 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1164 1264 ## PG1481 conjugative transposon protein TraG Predicted protein(s) >gi|228307146|gb|ACLR01000200.1| GENE 1 3 - 1164 1264 387 aa, chain - ## HITS:1 COG:no KEGG:PG1481 NR:ns ## KEGG: PG1481 # Name: not_defined # Def: conjugative transposon protein TraG # Organism: P.gingivalis # Pathway: not_defined # 1 384 458 841 841 571 72.0 1e-161 MVRQYYEQGTHILLIDTGNSYEGLCQFIHAKTKGEDGIYYTYTEENPIAFNPFYTDDYVF DIEKKESLATLILTLWKSGDEKVTKTEVSELFASIGAYINKITADRTIVPSFNTYYEFML DEYRQDLLSREIKVTREDFNIDNLLTTLKHYYRGGEYDYLLNSTDNIDLLSKRFVVFEID AIKDNKILFPVVTIIIMESFINKMRRLKDERKMIIIEEAWKAISSANMAEFIKYLYKTVR KHFGEAVVVTQDPDDILRSPVVRESIINNSDCKILLDQRKYMNKFDAIQEALGLTNKEKE QILSINQNNDPNRLYKEVWFGLGGMVSAVYATEVSLEEYFAYTTEATEKVAVQRLAAQLG GNIELAIRQMAQAQREKEQIINAVAYE Prediction of potential genes in microbial genomes Time: Fri May 27 10:14:26 2011 Seq name: gi|228307143|gb|ACLR01000201.1| Porphyromonas uenonis 60-3 deg1118640599506, whole genome shotgun sequence Length of sequence - 586 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 88 - 586 554 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228307143|gb|ACLR01000201.1| GENE 1 88 - 586 554 166 aa, chain + ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 165 46 235 341 254 62.0 1e-66 MPDGRTVIPYGLEVTFDKTTHLIFPAPIRYVDLGSANIVAAKAESAENVLRVKASVKDFE TETNMSVICTDGSFFAFNVKYAKEPEKLSLEMVDFLHAGEGNLPSNKADIYFKELGNETP TLVRLLMSTIHKQDKRLVKHISAKQFGMQFGLKAIYAHNGLLYFHT Prediction of potential genes in microbial genomes Time: Fri May 27 10:14:29 2011 Seq name: gi|228307140|gb|ACLR01000202.1| Porphyromonas uenonis 60-3 deg1118640599489, whole genome shotgun sequence Length of sequence - 517 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 516 313 ## gi|228469429|ref|ZP_04054441.1| conserved hypothetical protein Predicted protein(s) >gi|228307140|gb|ACLR01000202.1| GENE 1 3 - 516 313 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469429|ref|ZP_04054441.1| ## NR: gi|228469429|ref|ZP_04054441.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 171 4 174 482 286 100.0 2e-76 PRPTKYSVSFAYDETVGTLLFLGKSVQSGASIPLASLTNLSLTYQAKELVGNKVKVTVTN DAPKAVSKEATWTVNADDTYSVETSQEGEGELVVRGAKNLQRVPAGTELTVFATPADGWE LVALTANDVDILKSKTFEVAGNTTVRATFTKKAPTTYAVTLTKEGEGKVAI Prediction of potential genes in microbial genomes Time: Fri May 27 10:14:46 2011 Seq name: gi|228307111|gb|ACLR01000203.1| Porphyromonas uenonis 60-3 ctg1118640599679, whole genome shotgun sequence Length of sequence - 37686 bp Number of predicted genes - 29, with homology - 27 Number of transcription units - 11, operones - 4 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 204 332 ## COG0450 Peroxiredoxin - Prom 290 - 349 4.6 - Term 479 - 531 1.0 2 2 Tu 1 . - CDS 546 - 2858 1574 ## Cpin_2740 TonB-dependent receptor plug - Prom 2947 - 3006 2.1 + Prom 3036 - 3095 4.2 3 3 Tu 1 . + CDS 3199 - 4296 14 ## Sden_0879 hypothetical protein + Term 4331 - 4373 -0.5 4 4 Tu 1 . + CDS 4412 - 5479 540 ## TRQ2_1835 hypothetical protein + Prom 5558 - 5617 1.7 5 5 Tu 1 . + CDS 5734 - 5901 102 ## + Term 5976 - 6025 2.4 - Term 6069 - 6109 7.2 6 6 Op 1 . - CDS 6168 - 9797 4593 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 7 6 Op 2 . - CDS 9843 - 11027 1336 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 11069 - 11128 2.7 - Term 11446 - 11505 21.5 8 7 Op 1 4/0.000 - CDS 11594 - 11932 373 ## COG4744 Uncharacterized conserved protein 9 7 Op 2 . - CDS 11916 - 12512 716 ## COG0811 Biopolymer transport proteins 10 7 Op 3 . - CDS 12560 - 13264 525 ## gi|228471109|ref|ZP_04055933.1| putative membrane protein 11 7 Op 4 1/0.000 - CDS 13268 - 17506 5106 ## COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases 12 7 Op 5 . - CDS 17542 - 19503 1977 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins 13 8 Tu 1 . - CDS 19624 - 20286 951 ## PGN_0558 hypothetical protein - Prom 20307 - 20366 3.1 - Term 20582 - 20633 9.4 14 9 Op 1 . - CDS 20690 - 21496 986 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 15 9 Op 2 . - CDS 21529 - 22743 1510 ## COG0426 Uncharacterized flavoproteins 16 9 Op 3 . - CDS 22777 - 23691 1189 ## COG0682 Prolipoprotein diacylglyceryltransferase 17 9 Op 4 . - CDS 23732 - 24640 1039 ## BVU_1659 putative oxidoreductase 18 9 Op 5 . - CDS 24670 - 25530 764 ## COG2321 Predicted metalloprotease 19 9 Op 6 . - CDS 25527 - 27080 1481 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 20 9 Op 7 . - CDS 27086 - 28129 1080 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 28153 - 28212 2.1 - Term 28138 - 28187 12.3 21 9 Op 8 . - CDS 28223 - 28705 630 ## PG1341 hypothetical protein - Prom 28939 - 28998 1.8 - Term 29424 - 29475 12.4 22 10 Op 1 16/0.000 - CDS 29556 - 30035 650 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 23 10 Op 2 4/0.000 - CDS 30074 - 31903 2574 ## COG1269 Archaeal/vacuolar-type H+-ATPase subunit I 24 10 Op 3 16/0.000 - CDS 31900 - 32520 924 ## COG1394 Archaeal/vacuolar-type H+-ATPase subunit D 25 10 Op 4 16/0.000 - CDS 32529 - 33869 1827 ## COG1156 Archaeal/vacuolar-type H+-ATPase subunit B 26 10 Op 5 . - CDS 33893 - 35662 2304 ## COG1155 Archaeal/vacuolar-type H+-ATPase subunit A 27 10 Op 6 . - CDS 35671 - 36657 1339 ## PGN_1763 hypothetical protein 28 10 Op 7 . - CDS 36740 - 37333 755 ## COG1390 Archaeal/vacuolar-type H+-ATPase subunit E - Prom 37447 - 37506 4.3 29 11 Tu 1 . - CDS 37530 - 37685 131 ## Predicted protein(s) >gi|228307111|gb|ACLR01000203.1| GENE 1 3 - 204 332 67 aa, chain - ## HITS:1 COG:TP0509 KEGG:ns NR:ns ## COG: TP0509 COG0450 # Protein_GI_number: 15639500 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Treponema pallidum # 5 67 1 62 188 77 57.0 5e-15 MQMTMQPIINSNLPEFKVPAYTKSKGFHEVSNEDLKGRWSVLFFYPGDFTFVCPTELADL ADNYAEF >gi|228307111|gb|ACLR01000203.1| GENE 2 546 - 2858 1574 770 aa, chain - ## HITS:1 COG:no KEGG:Cpin_2740 NR:ns ## KEGG: Cpin_2740 # Name: not_defined # Def: TonB-dependent receptor plug # Organism: C.pinensis # Pathway: not_defined # 122 756 27 721 725 129 23.0 3e-28 MTESHLPAKEHKTTFVRLILSLLLVVSSAVASLAQERIGTVTGEVTTTTGEALVNAVVLF TSSQDSTHCFPAVCDEHGRFYQELPLGAYSYRVSYLGSSYIPERNQVEVSKSSTSSLSIA ITPTAQALEEVVVVAKRPFVSYDGGVARYNLLANPAAIGGNLLDGLKLIPGVQVEERGGL SVYGFYTLTVAVNGRILRLSPEEVQAYLSSLSVEDAGRVELIRHPGPEYGVQSGAVLNII TKGNPREGLNAFISADASYRRKISEGGRLRLNYNKDNKRSYIAYQVFDNRRLESLTTTLG ADTTSTSPHRGQAMQAGFEWQISPQQLFDVRLHGSLSSEHIDYSRGAHTDMKRMVGAVNL YHTLSADRWAWKSYADYTASGNQRSYSHSDSELQDRYHYLRLSTNYTYRFTPSLLGLLGV TQNNIWFATQAPTAPIQVNEQYYESNGSAYLTLRYHKGALDSYGGVQLNYDHRTSQAQGT RLLSDQAVRWQPYLNVAYDIARNHRLALSLQTYYQRPALRDLMPYASYAGFLYRVGNDRL QSSIRHNLALNYSYRRAAMLEVNLSNEQRPIVEYLTPYQGAYAITKGNLDYSRYLRIVAG APIPIIYRDNGLQWIATTYLAWHLQRDRGTIDGNECDRTFHAYYLQHKQSLNLPAQWYLD AQITYYSPLFVGVYKTQSQWWINLSISKRIASWKLSLSCYDLLNSNVARGEIMGLSQPIA FVQNWHSPKVTLSISCTLGNKRLKSSSRQPINSESRLTDSANEGLSFSKP >gi|228307111|gb|ACLR01000203.1| GENE 3 3199 - 4296 14 365 aa, chain + ## HITS:1 COG:no KEGG:Sden_0879 NR:ns ## KEGG: Sden_0879 # Name: not_defined # Def: hypothetical protein # Organism: S.denitrificans # Pathway: not_defined # 1 159 1 163 232 109 39.0 1e-22 MKTIWAEKAIKLLEHAREHMLCQTSFDKSTAFINIDNAVEVMFKTYLSLPELVMGMKKPA YSELKRCGSNFNRLVELMAIHYSDRFVGIDPTQIIHYHKIRNRLYHEPGKSSVCNDDLNN YYELAKLLLEYLFGVCQDHDEENLFLLYSKLEENVVQIFGKRLAQVTDESWRRKIEENVI TESLYESMKNILSAWYTLETANKKLETDSLRAGLKSEIRSANKVLDKIIATNKIDVLNQT NFFYYPSISELTGVVEIKEYSQSTLIGDSFSEDELSVKVPVIALEKPINVYQDREFLEEG VCDHTMYGIDLVQFYFTRNAGFSSKSYIGHRVCLRGTLFAWHTAHHYTPILLEANSCTLL NKDGH >gi|228307111|gb|ACLR01000203.1| GENE 4 4412 - 5479 540 355 aa, chain + ## HITS:1 COG:no KEGG:TRQ2_1835 NR:ns ## KEGG: TRQ2_1835 # Name: not_defined # Def: hypothetical protein # Organism: Thermotoga_RQ2 # Pathway: not_defined # 101 353 30 269 275 124 33.0 4e-27 MGKCKYCGKKAGFLSSIHKECEELHTQGLIECKEFVETTLFNPAETSTKITDTLEVFRQK NFLSEDEIRQIIQEEAKYHRVNSTVELNRLRELSAANYLTQKILDENLNSYSEGFIKEKC KQYFDRKIELEAVADSLATYRYRNKDFRDILLDSLNTASRRFLEDGVISDEERSLFNNFV GEFGINIGDLPSKYADSNIIKVKQLTFLKDLQNGEKPNFIVDAAPVILTKGEFFVWVYKG VTAYEERTKSEWVGRSGGASIRICKGVYYHVGQSKGHKVSTQYMAAVGTGFLMLTNKNII FYSRSKSIKVAYKKIIALQPYSDGVEIQRETSQKRLVFSGFDSWFIMNLLSTLEL >gi|228307111|gb|ACLR01000203.1| GENE 5 5734 - 5901 102 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLEGAEVWGISSEEYPNSSVENDFSPRRAEIKVRKNEMKLRKKQIKVPKNFLVPR >gi|228307111|gb|ACLR01000203.1| GENE 6 6168 - 9797 4593 1209 aa, chain - ## HITS:1 COG:FN1170_1 KEGG:ns NR:ns ## COG: FN1170_1 COG0674 # Protein_GI_number: 19704505 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Fusobacterium nucleatum # 6 409 3 406 410 578 68.0 1e-164 MANPTKKTMTCDGNQAAAHVAYMFSEVAAIYPITPSSTMAEYVDEWAAAKRKNIFGEIVE VQEMQSEAGAAGAMHGALQAGALGVTFTASQGLLLMLPNMYKVAGELLPGVYHVAARTIA SQALSIFGDHQDVMSARMTGLAQLCTGSVQEVMDLAAVAHLTAIKSRVPFIHFFDGFRTS HEIQKIEYLSNEDLEPLIDQKALRQFRERALSAHAPVVRGTAQNGDIFFQAREASNPFYD AVPAIAQDYMDQLAKITGRHYHLFDYYGDPEAEHVVIAMGSATEAIRESIDYLRAQGKKV GLVAVHLYRPFSVEHFLGALPKSVKRIAVLDRTKEPGAAGDPLYLDVKNALYTQPNAPLV VGGRYGLSSKDTTPAQIIAVFDNLAMNEPKDQFTVGIVDDVTFKSLPLGKEVELESDAYE AKFFGLGADGTVGANKNSVKIIGENTNKYCQAYFAYDSKKSGGFTASHLRFGDQPIRSTY LVVRPNFVACHVPAYLRMYDVLAGLRKGGTFLLNSVWDLDSIEEHLPNHIKRYLAENEIS FYMINATEIAQRIGLGNRTNTILQSAFFKISGVIPYDLAVEQMKKFIVKSYSRKGEEIVN KNFAAVDEGANVIQVPVKAEWANLPDEPAVEHAGDTDFVRNVVRVINAQRGDSLPVSAFA GREDGTWDSGTADSEKRGVSDLVPVWIEDNCIQCNQCAFVCPHATIRPFLLNEKEAQGTN VALLDATGKGFKEAGLKFRIQVNYLDCLGCSNCVNTCPGNKQGKALKMVHLDEVRDKQCD WDYMRHQVTNKSYMVDVQSNVKNSQFAQPLFEYSGACSGCGETPYVKLLTQLFGTRQVVA NATGCSSIYSASAPSTPYTTNDRGEGPAWANSLFEDNAEFGMGMYIASSSNRNRLVHLVK EILEDGQEQLSDELRQLLNEWVEQRFDGDASQQLSYKILPLLNAEAQGRMHYVYNLRHHF VKPSQWIIGGDGWAYDIGFGGLDHVLASGKNVNVLVLDTEVYSNTGGQSSKSTPLGAIAK FAAAGKRVRKKDLGLIATTYGYVYVAQIAMGANPAQTLKVLREAEAYEGPSLVIAYSPCI SHGLKGGMGSAQNEQKRAVECGYWHLWHHDPRREQEGKNPFVLDSKEPDFTKFKDFLKGE VRYASLFKMYPDIAEELANESLRSAYKRYSTYVRISSTEWENDYGPLADILDAKPEPTTP EEVHAVDLT >gi|228307111|gb|ACLR01000203.1| GENE 7 9843 - 11027 1336 394 aa, chain - ## HITS:1 COG:TM1265 KEGG:ns NR:ns ## COG: TM1265 COG1373 # Protein_GI_number: 15644021 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Thermotoga maritima # 26 394 32 387 387 60 22.0 8e-09 MEALYRTHDYLLRNLSNPIQRSLFGEIDFSAPLIGIYGCRGVGKTTFLLDYAARTFGSLN RKCLYVNLNNFLFTSETLVDFAKGFYDHGGRHLLLDQIYKYPSWHEDLLTCTHLMPDLQI IYTTSIVQYDSALPIEEQLPGAVYRLDGFSLREFIQLKTGLDLPQLSLEEILKNHETISR EIMGMVNPLNYLADYTHHGYYPFFLEDRNYSENLLKNINMMLEVDVSFLRNLDQRLLPKL RRLLYELGRTAPTSPNVSQLSQMISASRATISNYMHILSDAGLVTQLYRVGAETTTRKPA MCYLQNTNIGYALVPEPVTSTGLYATFFLTHLNHAHQVNTGGRAQVHFVLDETYEFRIDK ELGGRYRSDRYYAVQGIPIGHDNVIPLWLFGFIY >gi|228307111|gb|ACLR01000203.1| GENE 8 11594 - 11932 373 112 aa, chain - ## HITS:1 COG:MA4425 KEGG:ns NR:ns ## COG: MA4425 COG4744 # Protein_GI_number: 20093211 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 3 112 5 115 123 89 48.0 2e-18 MRRRSKRRTLRHDDTDPSSLVSNLFDVAMVFAVALMVALVTKFSMTEMLTQEDFTIIKNP GKDNMEIISKKGSTIERYTPTDSEDASSQRRGKRVGIAYELENGEVIYIPEE >gi|228307111|gb|ACLR01000203.1| GENE 9 11916 - 12512 716 198 aa, chain - ## HITS:1 COG:MA4426 KEGG:ns NR:ns ## COG: MA4426 COG0811 # Protein_GI_number: 20093212 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Methanosarcina acetivorans str.C2A # 1 191 11 205 273 116 36.0 2e-26 MFLLSNGLLIPVIIGLLLLFLLALLMLGGLIERAQRYKRLQRRYFAHQREDASALLGRLR QELGGESQETARLDLFEELLRSLLTAPAAERSLLIGEYELRLDKRLVYPQVLTKFGPILG LMGTLIPMGPALVGLSSGDMATMAYNMQVAFATTVLGLFVSAIGYLTLQRLHRYHHQELI YIDYIDELLTQAEDETKK >gi|228307111|gb|ACLR01000203.1| GENE 10 12560 - 13264 525 234 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471109|ref|ZP_04055933.1| ## NR: gi|228471109|ref|ZP_04055933.1| putative membrane protein [Porphyromonas uenonis 60-3] # 1 234 1 234 234 328 100.0 2e-88 MILIVSIFALLVALTTTAVRSDRRVRLAHAVLYIVGLVATHQATLRVSKLALDAMLRQAE QLSTLAMMVSLELLLTMAVVTYRPAHRPLRTIYHREGLVVAVMTACHQIAVWLPSLLMLP ALCYLRSFVIYSIPGVHYWAVTITFAVVLLLLIELIPRLIRDREFLRLLAMLLAGVLAVG SVIAYILIPERTQAPEVQLDSSSPRELGILLATLAGGMLVGYIAMLIKAKGSRK >gi|228307111|gb|ACLR01000203.1| GENE 11 13268 - 17506 5106 1412 aa, chain - ## HITS:1 COG:MA4424 KEGG:ns NR:ns ## COG: MA4424 COG1429 # Protein_GI_number: 20093210 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CobN and related Mg-chelatases # Organism: Methanosarcina acetivorans str.C2A # 861 1376 918 1429 1518 321 33.0 7e-87 MTFSKKHLYYIGATLLLGVIILCAYLLWPKPVRVALVNMPDFVASRMAAATDKENVRLTA VTDLSELKNYDAMIAFGMGLKWTDEDRALIKQLGEEKGLKYLAYMTTTPENSISNVDSIQ QLKLEVYLTNGGTSNYRSAFNYIRKEILGKSLRTGTIEEPVEYGYDLLFTDEDPDLAFDS VESFQKYYNEHGYKEGAPRIALFTGIAGPFGSSRDYLDELIGALEESGFNVYPISAMTRR LEFLTEIKPQAVIYFAHGRFGGDPAIAWLKEHNVPIFTPLLVSELYDDWIKDKQGMWGGY LSQTVVTPEIDGTILPFALVTLRENKQGFKEFHTIPERLPDFCSLLHRYVKLQTMSNADK RIALFYFKGPGQNSLVAQGIEVVPSLYNVLKYLQSQGYDLTGLPDTEEAFAKDLMSRGAL YNNYAEGNKQMMLHSNYPAFVSTKELTQWIDETFPPALKDSIEGRYGAIPGHDLVLERDG AEGIAVTRLTYGKVALLPQPGSGSGELDFKMVHGSTSVPAYPYIASYLWARNGWHADVLM HFGTHGSLEFIPGKQVALSNYDYTDRLVRDLPHIYYYTTANVGECMIAKRRSYGQAVSYL APPFIDTQLDKEMQPLRDLTDRYLASEKDDDVLSKRIKEMTIAKGFHRDLKLDSTMSKPY TRDEIELIASFVDELAHAKIVGGMYTTGVPFSSEKIRSSVRLLSVDPIAYALAQVDKSRG RITDAQIKDDVYFNARYLRPADRFVARVQDREIASGEVDALLQSLGVSRAELARADQFLK AQQEESAQSGMMGGMPAGMMGGGMPKGMSKGMPKGMPKGMGGGMPPHGKPASAETKKDPK LVLLAEGVSLLRRSVAQIPYYKRMLVTSPQLELASLANALRGGYTAPSPGGDFIASPSVL PTGRNLYAIDPEMTPTAKAWEDGQQLADALIADYRSRHNDSIPRKVSFTLWSSSFIESEG TTIAEIMALLGVEPVRDRRGKVIDVRVIPIKELGRPRVDVVIQTSGQLRDIAASRLFLLQ KAIDLVAETKDGKMPNQIALGRVEAERVLLEHGLPPEQARKLSGKRIFGGLNGAYGTGIQ EFVESGDRWEKESEIAEVYMNNMGAIYGDEELWGETAKGIFEAALQNTDAVVQPRQSNTW GALSLDHVYEFMGGLTLSVRHVTGKDPEGYFTDLRNRRRVKTQEIKQAIGIEARTTILNP TYVREQLKEGAGAADAIDETIRNTYAWNVMKPSAIDKELWDALYDMYVVDKHQLGTVDFF ERNNPAALQDLTASMMETIRKGYWQATAEQKQTIARLHAESLAKAGAGCSGMVCDNAKLR KMIQDQLTPEQQQEYTAALDKALKVTSQSGQKQQVLSKDSDKAQDKKHSSGSASAEDQDS FSTTEIVIIGGVVLVLILVLSLLYSRRKKRTK >gi|228307111|gb|ACLR01000203.1| GENE 12 17542 - 19503 1977 653 aa, chain - ## HITS:1 COG:STM2199 KEGG:ns NR:ns ## COG: STM2199 COG4771 # Protein_GI_number: 16765529 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Salmonella typhimurium LT2 # 40 454 31 452 663 131 27.0 4e-30 MKSSLYIFLSLLTLASSLSATPLLPQDSILLDSTKVKCLDEVVVTGTRTRCPMKNISIPI RVVSPKEIEAVQARSVEDLLQMVIPGVQTSTHGTQNRMSIRGLSADYYLFLIDGERMTNE GASSSVDLERIDPSSIERIEMLQGSSSALYGSNAIGGVINIITKRSHKKLDATLSGHYDT QSIQRYNGRLVMKLGRVTSTTTGGYAKQLDYELPSVRADIPRTMPGFYTFHMEEQLRYLS PDKRLSMTATGRFHSRMQNFDDKEKNRYQSPTGNLRLLYKPTDGHSVEASYHIEGYKRDK YFFLATKEEGPWEPQFNYLTQTARMQYNYDPTEDPYKPSFNAGVEILHENLRSVQVTNLN QVHSASTKTLYGQMLWRMDNNWSTTVGIRQDMHSTYGTHLTPRLSIMWRNHNYALRISYS EGFRSPSLKELFMDWDHRGMFRIKGASDLKPEISHLVMITPEYNNSFMNLSLSASYNRIN NRIYTRPEQEGRVLQYRNGDKPLNLWSGTAMLRVTPFANFDININYALVLEQMKVQGKTH SFYIRNTRPHHINGSIQYGHRWGLYTLSGQFTGRYLSGVKSAVYDDASDDYKYASYPGYA LFRASVTQRWQTLLDLSLTLGCDNLFNYMTPIVEQGASLSPGRSYFVSLSLNY >gi|228307111|gb|ACLR01000203.1| GENE 13 19624 - 20286 951 220 aa, chain - ## HITS:1 COG:no KEGG:PGN_0558 NR:ns ## KEGG: PGN_0558 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 213 1 211 216 140 37.0 2e-32 MKKTILLSLAALMTLLLCASCKSDKNEPKPVPNPSQEKGMTKKIVVDASDYTKWVYINFD KGEVVSVSTPETDLSWDLGLHRYDFKTNGGTSGKGKGAAARTSQKDLMADIPTPKDSEWA LDREGTLLMKFDMSKHEMKYEKQSANFLLTSEPKDDGKGYLNKGIISRAGMPPTVTVDPS VFLVRSATGQIVRVRVLDYQNATKKTGYITLEYIIKADKK >gi|228307111|gb|ACLR01000203.1| GENE 14 20690 - 21496 986 268 aa, chain - ## HITS:1 COG:FN1143 KEGG:ns NR:ns ## COG: FN1143 COG0363 # Protein_GI_number: 19704478 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Fusobacterium nucleatum # 1 260 1 259 274 319 56.0 3e-87 MRLVIEQDYAAMSTWAAEHVIKRINEFAPTADRPFVIGLPTGSTPIGMYQELAKACQAGR VSFKNVITVNMDEYVGLEPSHPESYHYFMKSNFFDHIDIDPKNTHLLNGLAEDTAAECQA YEEMIQSLGGIDLFIGGIGSDGHIAFNEPGSSLASRTREVRLMPETIRDNSRFFDNDLSK VPTRALTVGVGTVTDAREVMILINGSNKARALCKAVEGHITQMCPISALQLHSDSIIVCD DDAAVELQVKTFRFYKQEEKLAREGLAY >gi|228307111|gb|ACLR01000203.1| GENE 15 21529 - 22743 1510 404 aa, chain - ## HITS:1 COG:FN0512 KEGG:ns NR:ns ## COG: FN0512 COG0426 # Protein_GI_number: 19703847 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Fusobacterium nucleatum # 6 400 6 399 403 330 41.0 2e-90 MEYRNQITDSIYYIGVNDRTKQLFEGSWSLPYGVSYNSYLLVGEQVVLIDGVEIGTAEHH LDKIKSIIGDRPIDYLIVDHMEPDHSGSIGLLRTLYPEMKVVGNAKTFGMLDSYFAPIPQ EQRVVVSEKEPLEIGGFTFHFVMAPMVHWPEVMFTYESSNNVLFTADAFGTFGTLNGAFI DRDMNLDLYYEEMYRYYACIVGKFGMFVQKALAKYSSLGLSPQYICPTHGPVWTEHGFPK ALAIYDQLSKYDTSCGAVILYGSMYGHTEQMAEAVAQGLAQSGIKEIVVHNVSTADPSHM LRDIFKYRALIVGAPTYCNSLFSPMRDILNKVALREVKHRIIGYFGSCTWAGQSIKIMPE ILEKLAFEQVTDPVEIKGAATPEQLAQGRDLGAAIAQRLLELYR >gi|228307111|gb|ACLR01000203.1| GENE 16 22777 - 23691 1189 304 aa, chain - ## HITS:1 COG:VC0674 KEGG:ns NR:ns ## COG: VC0674 COG0682 # Protein_GI_number: 15640693 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Vibrio cholerae # 13 284 10 268 271 130 31.0 4e-30 MSSTLPLLAITWDVSPAIFTVGTFELRWYAILFAVGLFVFGPWIVHRIWRREGLPEPWFD KLFWYVAIGTIVGARLGHCLFYDPLYYLANPVEILKTWEGGLASHGGVIGLIIAMWIYAR KVSHKPILWGMDRLCVPVGLVAAMIRLGNLMNSEIFGYPTDVAWGFRFVRSAEWQTLAGG MPCHPTAIYEALAYLLVFTICMWLYWRRNAGYKYQGLIVGTLLTLTFVARLLIETVKFVQ EPWEHKLVESIGLNQGQLLSIPFILIGVGMIIYALRHPVPQAEVERLLAEETKHKEQASH SNKH >gi|228307111|gb|ACLR01000203.1| GENE 17 23732 - 24640 1039 302 aa, chain - ## HITS:1 COG:no KEGG:BVU_1659 NR:ns ## KEGG: BVU_1659 # Name: not_defined # Def: putative oxidoreductase # Organism: B.vulgatus # Pathway: Lysine biosynthesis [PATH:bvu00300] # 3 302 2 299 299 350 61.0 5e-95 MNQKIKVLVVGYGHVGKQVVTTVRTAPDMELVGVVRRSKNDPQSQVLTAHGIAVYGEDEA LPKADVAILAVPTRSVPDYAKRYLAQGISTVDSFDIHTQIATLRHDLMAVAQEHQAVSII SAGWDPGSDSIVRTLMQAMAPEGITYTDFGPGMSMGHSVAARAIAGVRDALSMTLPIGYG QHRRQVYVELEAGANEEQVRQAILADDYFAHDETIVTFVPSVAALEDVGHGVHMMRKGVS GETHNQRLTFEMQINNPALTAQMMVASARATQRLTPGAYTLPEVPVIDLLSGDRSDWIAH LV >gi|228307111|gb|ACLR01000203.1| GENE 18 24670 - 25530 764 286 aa, chain - ## HITS:1 COG:BMEI0525 KEGG:ns NR:ns ## COG: BMEI0525 COG2321 # Protein_GI_number: 17986808 # Func_class: R General function prediction only # Function: Predicted metalloprotease # Organism: Brucella melitensis # 28 278 43 298 308 230 48.0 2e-60 MKWLRPNDSSANYQDRRGRISGRGLALGGGIGGIVIVLASLFFGVDLTGLMQVADNVLPG SQTEQVDPSRVNENEEFKVFTLRVFNSCNDVWTDLFNSELQRSYAAPTLVTFTDQVQSRC GGATSEVGPFYCPADQTVYIDLDFFNLLASRFKAPGDLAMAYVTAHEVGHHVQNLLGISD KLHQQQGRVSQEAYNRASVQLELQADYLAGVWAYHAQRLGIILIEPGDLEDALTAANAIG DDTLQKEAQGYAVPDSFTHGTSAQRMQAFRSGFETGNLDGASRYRF >gi|228307111|gb|ACLR01000203.1| GENE 19 25527 - 27080 1481 517 aa, chain - ## HITS:1 COG:BB0533 KEGG:ns NR:ns ## COG: BB0533 COG1235 # Protein_GI_number: 15594878 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Borrelia burgdorferi # 15 262 5 251 253 169 36.0 2e-41 MPSRHRHPSPQIVELLGSGTSTGVPEVGCYCRTCLSLDPRDQRTRTSALMVSPSGRRILI DCSADFRQQALLAGIDHLDAIILTHQHYDHIGGLDDLRTISWRTELPIYAEPNVLESIKA RLHYYFGPHRYPGTPHLTLHPISSLEPFTLYDLTIEPIRVMHGKQPILGYRIGSFGFLTD LKSIAPEEIEKLRGVELLFVNGLRYTKPHPTHQTIEEALELTAKVQPQRSYIIHLSHHAP PTAELQVRLPEGVYVGYDGLTLRYTEGTGYIPQPTQDKLVRSAAEPFTYRDCGRIDYREA LEMQQKLWQERIDAKVAHRTVPKDVLLFCEHEPVLTIGKHGKQTNLLVSETLLNSKGIQL VQIERGGDITYHGPGQITGYPIFDLEHYGIGVKEYIHTMEQCIIDLLYLYGIRSERLEGA TGVWIDAHTPQARKICAIGVHTSRYVTMHGFALNVNTDLSYFQLINPCGFTDKGVTSMEQ EIGRGEVYFPLVKHQLEGLFRKHFTHLMYHLPNDDSL >gi|228307111|gb|ACLR01000203.1| GENE 20 27086 - 28129 1080 347 aa, chain - ## HITS:1 COG:HI0268 KEGG:ns NR:ns ## COG: HI0268 COG0812 # Protein_GI_number: 16272226 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Haemophilus influenzae # 7 346 2 328 341 246 41.0 4e-65 MEIIQQQPLREYHTFATEATADWWINYSSAEDLQTLARDEYFVSQPYLPIGAGSNLLFTH DKYRGVILYSQINDLHYYDETESALTRPGQQHVRAGSGIVWDHFVELMLSRGLYGVENLS LIPGTVGAAAIQNIGAYGSEVSQYIVAVDVVDLATGMTLRIPSALCDYRYRYSIFKDPQY HSYIVTHVHFILSTEPTCNLSYASLAKAFEGRDTMPTPEEIRQEVIRIRRAKLPDPEEIP NGGSFFMNPIVPLAQYEKLAKQYDTPVPHYPTHHEGEVKLSAAWLIDQTGLKGYRTGAVG VYEKQPLVLVNYGGATGQEVVALAEHVQQEVSRKFGITLHPEVRYID >gi|228307111|gb|ACLR01000203.1| GENE 21 28223 - 28705 630 160 aa, chain - ## HITS:1 COG:no KEGG:PG1341 NR:ns ## KEGG: PG1341 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 158 29 182 184 150 50.0 1e-35 MKKALILLSSVLVLLSVSACGPKQSAYRQVYEKAKQREVAAQQKEPVMTPPANVVVAREP AADIQLRRERLEAVKGEDANMLKTYNVVVGSFQNHTNAYSLKERLQAQGYNPVLGQNEAG MLRVIITSFDNRREAEASREQVKGRFAPDFQDAWILEKIR >gi|228307111|gb|ACLR01000203.1| GENE 22 29556 - 30035 650 159 aa, chain - ## HITS:1 COG:FN1740 KEGG:ns NR:ns ## COG: FN1740 COG0636 # Protein_GI_number: 19705061 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Fusobacterium nucleatum # 9 153 20 159 160 63 37.0 2e-10 MNELIAYGGVALMVILTGIGSSIGVTIAGNATIGSMKKNPDALGQYIGLSALPSSQGLYG FVGFFMANGLIKDLLTAGVLGAGAAWAIFAAGLSLGLVGLYSAIRQAQVCANGIKGIGAG NNLFGATMVMAVFPELYAILALLVSILTFGVVRGLFLAA >gi|228307111|gb|ACLR01000203.1| GENE 23 30074 - 31903 2574 609 aa, chain - ## HITS:1 COG:BB0091 KEGG:ns NR:ns ## COG: BB0091 COG1269 # Protein_GI_number: 15594437 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit I # Organism: Borrelia burgdorferi # 1 607 1 604 608 146 24.0 1e-34 MIEKIDKYLFLVYHQDYDSFLLKLRDLGVVHIKENKSTSESEQIKEIVVARRHLAGLIRT LSRKRSEEQPVGTPRKPASTEEGEALLQQIETLLEDRRQIASQIESQQRENDYWEPWGEY DVQQLEQLQQAGYPVRFYIIPTAQYQEHWEEEHNAIIIDTRRSHHYFITVGDKSTERIEA EQIKAPTHTASELADRLASFEQRAEQIDTEIQEFIDQHLEDLQGYDLLLQDKYQMSNAFL QATGEADDKVMLLEGWIPSKIVPEVRQELDQLPCYYAEQEILDEDKIPIKLQNNRFSRLF EPITQMYSLPNYSELDSTPLFAPFFMLFFSLCFGDAGYGLVIFLLASLFKRKVKGQSTKD ICSLAQWLGGTTVVVGSLLGTVFGMVMPWANDGSLLGSVRNDYFLNQDNLMLLSVVLGII QILFAKTVAAVKIQKQRGIKYALSAYAWVIVIFALIMAVALPMATTALPSYVTYIFYGLA IAAGLVVVFYNSPGKNIFLNVGSSLWASYNTASGLLGDTLSYIRLFAIGLTSGVLGGVFN NLAVSMSEGLPVGVNWLVMVFILLFGHGLNFGLAIISSLVHPLRLTFVEYYKNSEFEGGG KPYTPFKVN >gi|228307111|gb|ACLR01000203.1| GENE 24 31900 - 32520 924 206 aa, chain - ## HITS:1 COG:BB0092 KEGG:ns NR:ns ## COG: BB0092 COG1394 # Protein_GI_number: 15594438 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit D # Organism: Borrelia burgdorferi # 4 193 5 196 204 90 32.0 1e-18 MAIKFQYNKTSLQQQQKQLKMRERTLPTIKSKESALRLEVKKARREIDALNEQLEQGIQG YQDMVALWDEFDPTLVSVTDVQLSTKKIAGVVVPVLDNIDYEVKPFSLFSRPSWFAQGVE LLKALATLGIEAEFLNLKLEYLEYARRKTTQKVNLFEKVQIPGYKDAILKIKRYLEDEES LSKASQKIMRTNLEIRAAKQKERLAQ >gi|228307111|gb|ACLR01000203.1| GENE 25 32529 - 33869 1827 446 aa, chain - ## HITS:1 COG:TP0427 KEGG:ns NR:ns ## COG: TP0427 COG1156 # Protein_GI_number: 15639418 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit B # Organism: Treponema pallidum # 8 438 3 429 430 395 47.0 1e-109 MATQAFQKIYTRITNITKATCMLHATGVGNDELATIDGKLAQVVRINEDEVTLQVFAGTE GIPTNAEVIFLGKAPALKVSDQLAGRFFNAYGEPIDGGPQLEGEDVEIGGPSVNPVRRDQ PSELIATGIAGIDLNNTLVTGQKIPFFADPDQPFNEVMALVALRAESDKIILGGMGLTND DYLYYKKTFSNAGALDRIVSFINTTEDPSVERLLIPDMALSAAEYFAVQKHEKVLVLLTD MTNYADALSIVSNRMDQIPSKDSMPGSLYSDLAKIYEKAVQFPDGGSITIIAVTTLSGGD ITHAVPDNTGYITEGQLYLRRDSSIGKVIVDPFRSLSRLKQLVIGKKTREDHPQVMNAGV RLYADAANAQTKLENGFDLTDYDQRTLDFAKDYANDLLAIDVNLNTTEMLDHAWSLFAKY FTPAEVSIRQSLVDKYWPTDSKVDKA >gi|228307111|gb|ACLR01000203.1| GENE 26 33893 - 35662 2304 589 aa, chain - ## HITS:1 COG:TP0426 KEGG:ns NR:ns ## COG: TP0426 COG1155 # Protein_GI_number: 15639417 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit A # Organism: Treponema pallidum # 2 587 4 579 589 555 47.0 1e-158 MTNGVVKGIVSNLVTVEVDGPVSQNEICYITVRGVELMSEVIKVIGANVYVQVFESTRGM KVGDKVSFTGHMLEVTLGPGMLSKNYDGLQHDLDKMDGVFLKRGDYTHPLDTTKKWDFTP IAKAGDTVQAGSWLGQVDENHQPHRIMVPFVMKGSYTVESVKSAGQYTVEETIAVIVDAE GKKHDITMIQRWPVKVPIQVYSEKPRPFKLLETGVRTIDTLNPIVEGGTGFIPGPFGTGK TVLQHAISKQAEADIVIMAACGERANEVVEIFAEFPELEDPHTGRKLMERTIIIANTSNM PVAAREASVYTAMTIAEYYRSMGLRVLLMADSTSRWAQALREMSNRLEELPGPDAFPMDL SAIVANFYARAGFVYLNNGETGSVTFIGTVSPAGGNLKEPVTENTKKVARCFYALEQERA DSKRYPAVNPIDSYSKYIEYPELKEYITADLGSDWLDKVNEIKTRMQRGKEIAEQINILG DDGVPVEYHVIFWKSELIDFVILQQDAFDDIDCNTPLERQKYMLDRVIKICHTDLNFEDF NEVSTFFKTLINHLKQMNYSEFQSEDFKKYQQQYEQLIEQQSTHASSNI >gi|228307111|gb|ACLR01000203.1| GENE 27 35671 - 36657 1339 328 aa, chain - ## HITS:1 COG:no KEGG:PGN_1763 NR:ns ## KEGG: PGN_1763 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 328 1 312 312 225 44.0 2e-57 MAKYYATIAGLPNIGVDDRKLPIQTDALQAELRQELTKRDRRLLDLLLMEQELPQILETI NAWLSDDSIHWEDDPSEIELEPKEPLETIDAKELADYIIAVQQRTKRPRTKQLPDFIKEY IEMRLPDPELEEELAEERAEMREELQQAEEPYTIWQLRLEQDKLIAMYYDYLMGQKNSFV AEWAEFNLNIKNILAAYTSRQLGFDPKEYIIGGGTLQHHLRTSQAADFSITEELFPQIQQ LVNISREEDIARREQLIDRLRWDWLEEHTFSKPFDIEYLLAYYLELEILERWVSLNEETG EQVFRQIVSQLKHESTTSLEEFKRKQKK >gi|228307111|gb|ACLR01000203.1| GENE 28 36740 - 37333 755 197 aa, chain - ## HITS:1 COG:BB0096 KEGG:ns NR:ns ## COG: BB0096 COG1390 # Protein_GI_number: 15594442 # Func_class: C Energy production and conversion # Function: Archaeal/vacuolar-type H+-ATPase subunit E # Organism: Borrelia burgdorferi # 1 194 2 195 200 62 21.0 6e-10 MDSKIKELTDKIYHEGVEKGNQEAAQILAKAKQQSDDMIATAQAEAQRIVSDAQRQAADL TKNTQSELKLYAEQVVSSTQSTIADSLTDRIVRDNVQAMTTDADFMQKLMLAIVQQWTVG EPMVIETANAEALEKYMLGNAKALLDSGQVTIRTGAAQGAGFSVAPADGSYKVNFGEEEF VNFFKSFLRPRLVEELF >gi|228307111|gb|ACLR01000203.1| GENE 29 37530 - 37685 131 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no NRKSLPRNGQILRNFEIFLPKFHFILPNFYIQPPWGMFVFQRFICRFLREN Prediction of potential genes in microbial genomes Time: Fri May 27 10:15:37 2011 Seq name: gi|228307108|gb|ACLR01000204.1| Porphyromonas uenonis 60-3 deg1118640599583, whole genome shotgun sequence Length of sequence - 508 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 135 - 350 200 ## gi|228471410|ref|ZP_04056205.1| putative extracellular protease - Prom 435 - 494 2.8 Predicted protein(s) >gi|228307108|gb|ACLR01000204.1| GENE 1 135 - 350 200 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471410|ref|ZP_04056205.1| ## NR: gi|228471410|ref|ZP_04056205.1| putative extracellular protease [Porphyromonas uenonis 60-3] # 1 60 752 811 946 125 100.0 6e-28 MGIDGGLEAYYVMLPNFIGYQSTPFTDKGYMAIELVISDSPTLSGDTIRETFTRGPLPVP SRGQGLRDLSQ Prediction of potential genes in microbial genomes Time: Fri May 27 10:15:43 2011 Seq name: gi|228307105|gb|ACLR01000205.1| Porphyromonas uenonis 60-3 deg1118640599630, whole genome shotgun sequence Length of sequence - 537 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 456 421 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228307105|gb|ACLR01000205.1| GENE 1 3 - 456 421 151 aa, chain - ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 4 151 165 312 341 196 61.0 2e-49 MVDFLHSGEGNLPSNKADIYFKELGNETPTLVRLLMSTIHKQDKRLVKHISAKQFGMQFG LKAIYAHNGLLYFHTSIRNTTNMRYQIDYVTFKVVDKAVTTQTAIQETILQPLRAYNDLA VVAPKSELRTIYALESFSLPEGKILEISLHE Prediction of potential genes in microbial genomes Time: Fri May 27 10:15:46 2011 Seq name: gi|228307101|gb|ACLR01000206.1| Porphyromonas uenonis 60-3 deg1118640599689, whole genome shotgun sequence Length of sequence - 551 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 79 - 550 164 ## PG1710 ISPg5, transposase Orf2 Predicted protein(s) >gi|228307101|gb|ACLR01000206.1| GENE 1 79 - 550 164 157 aa, chain + ## HITS:1 COG:no KEGG:PG1710 NR:ns ## KEGG: PG1710 # Name: not_defined # Def: ISPg5, transposase Orf2 # Organism: P.gingivalis # Pathway: not_defined # 23 157 2 140 312 83 37.0 3e-15 MRQLEQAKVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRKRKRPPQTTKGVVNHGFQDHL NTTPKYIATDHCRLTVSDITYVKCLGGFAYLSLTMDA Prediction of potential genes in microbial genomes Time: Fri May 27 10:15:49 2011 Seq name: gi|228307097|gb|ACLR01000207.1| Porphyromonas uenonis 60-3 deg1118640599774, whole genome shotgun sequence Length of sequence - 985 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 7 - 360 542 ## GFO_0855 IS116/IS110/IS902 family transposase Predicted protein(s) >gi|228307097|gb|ACLR01000207.1| GENE 1 7 - 360 542 117 aa, chain + ## HITS:1 COG:no KEGG:GFO_0855 NR:ns ## KEGG: GFO_0855 # Name: not_defined # Def: IS116/IS110/IS902 family transposase # Organism: G.forsetii # Pathway: not_defined # 2 99 216 314 328 77 40.0 1e-13 MLIVFTDNFKGWSAKKMASYCGIAPFYESSGSSVFHKSNTGGYSNRRLKGILTQAARSAI THNPTFKQYYQRMKAQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRALRA Prediction of potential genes in microbial genomes Time: Fri May 27 10:15:58 2011 Seq name: gi|228307078|gb|ACLR01000208.1| Porphyromonas uenonis 60-3 ctg1118640599756, whole genome shotgun sequence Length of sequence - 21665 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 6, operones - 5 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 3 - 62 1.6 1 1 Op 1 . + CDS 88 - 705 803 ## gi|228471154|ref|ZP_04055973.1| hypothetical protein PORUE0001_1567 2 1 Op 2 . + CDS 739 - 1959 996 ## gi|228471142|ref|ZP_04055961.1| hypothetical protein PORUE0001_1568 3 1 Op 3 . + CDS 1982 - 6649 2703 ## gi|228471153|ref|ZP_04055972.1| hypothetical protein PORUE0001_1569 4 2 Op 1 21/0.000 + CDS 7094 - 8260 1360 ## COG0477 Permeases of the major facilitator superfamily 5 2 Op 2 5/0.000 + CDS 8375 - 8683 451 ## COG0477 Permeases of the major facilitator superfamily 6 2 Op 3 . + CDS 8680 - 9831 1443 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 7 2 Op 4 . + CDS 9878 - 11236 602 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 + Prom 11292 - 11351 2.9 8 2 Op 5 . + CDS 11460 - 11624 115 ## COG2768 Uncharacterized Fe-S center protein + Term 11725 - 11780 15.9 + Prom 11745 - 11804 3.0 9 3 Op 1 . + CDS 11901 - 13802 1860 ## COG1154 Deoxyxylulose-5-phosphate synthase 10 3 Op 2 17/0.000 + CDS 13793 - 15136 1559 ## COG0569 K+ transport systems, NAD-binding component 11 3 Op 3 . + CDS 15201 - 16655 1781 ## COG0168 Trk-type K+ transport systems, membrane components 12 4 Op 1 . - CDS 16663 - 17748 1284 ## COG0795 Predicted permeases 13 4 Op 2 . - CDS 17844 - 19478 2366 ## COG1418 Predicted HD superfamily hydrolase - Prom 19582 - 19641 1.9 - Term 19614 - 19647 0.2 14 5 Op 1 . - CDS 19657 - 19992 382 ## gi|228471150|ref|ZP_04055969.1| conserved hypothetical protein 15 5 Op 2 . - CDS 19992 - 20315 400 ## gi|228471149|ref|ZP_04055968.1| conserved hypothetical protein - Prom 20341 - 20400 2.9 - Term 20930 - 20963 6.1 16 6 Tu 1 . - CDS 20974 - 21663 470 ## gi|228471144|ref|ZP_04055963.1| hypothetical protein PORUE0001_1583 Predicted protein(s) >gi|228307078|gb|ACLR01000208.1| GENE 1 88 - 705 803 205 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471154|ref|ZP_04055973.1| ## NR: gi|228471154|ref|ZP_04055973.1| hypothetical protein PORUE0001_1567 [Porphyromonas uenonis 60-3] # 1 205 30 234 234 400 100.0 1e-110 MSDLAPASGNKHPDCRLALRLNEQDRHEGLLPEPLYFATDTIECPMPPGGSTIRVPVAPN LTRYSNDFDISLTELPSKVIYPLHIEIEDNNAAYNFMGQLTNPTKHVIYQAPLPNEGTTR STRLSTLRLDDPKTLPQLSLVRSDTGAKIFTYDLKKLLAKKPDYRPECQFEYDVKIRLKT LPDNTHYAVDIFVDGWRVHSYEIEL >gi|228307078|gb|ACLR01000208.1| GENE 2 739 - 1959 996 406 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471142|ref|ZP_04055961.1| ## NR: gi|228471142|ref|ZP_04055961.1| hypothetical protein PORUE0001_1568 [Porphyromonas uenonis 60-3] # 1 406 1 406 406 775 100.0 0 MNRLRHTNIYTLLLILGALLTSTSCVRDYNSLEEDETGYVSIQFDLLHALHANGLRGNST EELDNKLQELRMIVFPEGENASVINLLATNQQRENKRIIFKLSKLQKYDFYFIANESASG QKGSDLAFLDNQEVILRSQLEEMKTVKASNIVSEEEMTGVGASIMMTALYKGVLISESLQ GAGTQSSPYIIDLTKFNEVQRPNLTATNRAPAELMRSLAKVELTLKGIVAIRTKPGSTAS NPQYNYSWVLPYGYKDGSKLLIEILNMPKSYTLFPSNRLTDIATVGTLPPYQFSFSKDPN PAYIVPPTMTGPSIGGIYMGDYKITLYLPEYLASSQLAEAQRPAIKITYQVAGSDDKLSK IYPIQNGTPASTDYETVLAGLTDRPDWCVYRNRFYQIQVNIMGRQF >gi|228307078|gb|ACLR01000208.1| GENE 3 1982 - 6649 2703 1555 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471153|ref|ZP_04055972.1| ## NR: gi|228471153|ref|ZP_04055972.1| hypothetical protein PORUE0001_1569 [Porphyromonas uenonis 60-3] # 1 1555 1 1555 1555 3147 100.0 0 MFACIMIMNTLSPHITLSAVARRFSLVWLMLLLGTLSIFAQSASDFSVTVVSTPSTCVQN GQVEIKVSKVPGAPTNYTYKAYYDLLNSKGTSVTTPQGYVANNVVANLYPGTYTALVRIE VQETGLKIDLPPKTITITSTYKNPTVKVREVRKSLNNYRPKGSSAPVPTGILSVTVLDGN GPYTLTIEVAPTAYKGKKEFSLEKGKELFLYEVPAGQYRLKVSDACGVAPVQTLEMTNVR RDIPNANISHYNMPFKKWLTMTSDMRMRQCGWLRLNYVSTKSDTNEPDLRPYFDHKDTLA RYYEYAWQTWSDWNASKPRVYHEFQKTAPFGSTNYGSDKEGIYYKLPDGVTYKMMGQQSS LYHPLAFIRVKGSSEELPRGYSATNYDWNSLDVDYERNNSDPCSPTYVLQVRPRNDHDVL LCLPITVRVVSKTDPNDTQEITLTKDVSYYTDFPKPLKYSENYTLTTIAGNGQKKAETIE AITWSYGFDISNTSNDYCTGIKKYLPYIKRISTPPITATTSFAGYKIRFVSAPADFTPEE GALAVGEEYTIPENMNGASIYPFSPKAKINSIIYCYISVGEYRFELTDPCGAKHNLKLTI SSNKAPRYAGDISRFAPRTVKVECGRVRIYPFAGGSEGILTRDGVSVQPYFRITNLPKGV SYNDLRSNISDDYPEWRDDKMFTSSYKDIADPKSIYIDFPATDGRVDIKLHYDEKSYNSL PCLPTTQLSLENPPLTYDRDSYIGYSCPFGTSGLLHIVPVNCVGNATIEIYDTETGELKY TFNNVDKTAGITQELKGTAENPVPSSYRVKITDQQCDNTSEEVIAIYSLASPSAIRSKEQ QRKFCVGDRIQLEVINFGDKVYTWTLPNGEQRTGRKLVIDQAELEHTGTYTVSVSAVKCD GAETKITLTTEISVSPRELWWRQEAEDQNWNNPNNWSQADGKLIQAVPTSCTDVHIPAQV DKGYPDLSAQGTDRDVFGDPVCGNIYFHYGAQLGSPQLLTYERAFVDYNFGKMSNGGTVV AHQQTGHTTADSKLLDRDRWYMVATPLNNMVSGDFSLAGYPKTYQRYFVASQSPNSATDV AFTRPFDTMTQTFAPTAYYHGFALKVAGWESGRKGYDDHKYLNQINGIIRVPFFADASHA AAYPLHSYDATAGVSTFRYYNEETLAPLAYTERANRGKGVYPYRFVYERYNAAKPTSSQI ATITDGGVTLQGYALPISGVAAGSYFMVGNPFMTPIDFDKLWKFNKDVIYPYYYVFEDNQ WQVYSLEASIASTRGKAIAPLQAVLLRSKSGSSSQLRFPTSGDKSVLLASWSLGGGDLVS VQSAEMPHKSTTLPIHLQMGHGGDAPLASAYVMWDAEGDNVPALGNNEYSESPLVYVVDA DCGEGEMVLYPKRETGRLDVGVRASYASEMVLDFSDMDRSLYEYMTLTDRKSGREQDLLR QPQYRFVHELGVADPRFTLQLKRYGVPTVVEEPAHAVVTPEISIHAVEESCIVQANQPIA LIEVYDLSGQQVYRYASKANAQTLEHAISLRELPRSMVVKVYLENGFMDIRKVQF >gi|228307078|gb|ACLR01000208.1| GENE 4 7094 - 8260 1360 388 aa, chain + ## HITS:1 COG:TM0130 KEGG:ns NR:ns ## COG: TM0130 COG0477 # Protein_GI_number: 15642905 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Thermotoga maritima # 1 360 18 363 384 226 37.0 6e-59 MLGDLVHESARSVNGQYLSLVGLSATQVGLVFGLGEFLGYALRLLSGAWLDKSKRYWLFL FVGYGVHLVIPLMGLTTSWGWLYSFILLERIGKALRSPAKDTILSAVAENQIGLGYAFGI QEALDQLGAFLGPLIFTALFYFVGSSGLEVFQLGYQLLVIPFIILMVVLVLVHRKFVREA LTPQVDTSQKPPRLQPIFWIYSAFTFFVAFGLINFSLIGYHLKTQQIVSDGMVPILYAVA MAVDALVAIFIGKGYDRLKRQLGHKTGGVLILLIVPVLTAFVPLLTLSHSVGMLWAGMAL MGVVLGAHETVMRSAIADITPFGKRGIGFGIFNTIYGLSLLFGSFLMGWLYDLEQQPIII AMTIGSEGVAIALYVVLYKRIRRERLSN >gi|228307078|gb|ACLR01000208.1| GENE 5 8375 - 8683 451 102 aa, chain + ## HITS:1 COG:lin2951 KEGG:ns NR:ns ## COG: lin2951 COG0477 # Protein_GI_number: 16802010 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Listeria innocua # 7 96 4 93 466 85 47.0 2e-17 MQQTPPTPYQGNDRVLFGFIFGLLSFWLFAMTLLNIHVDMNKELGLSISTLSFAVSVTSL VSGLFIVVFGGLADRFGRVKLIRWGFYAAILGALLIYRHTRL >gi|228307078|gb|ACLR01000208.1| GENE 6 8680 - 9831 1443 383 aa, chain + ## HITS:1 COG:PA4344 KEGG:ns NR:ns ## COG: PA4344 COG1473 # Protein_GI_number: 15599540 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Pseudomonas aeruginosa # 7 382 12 388 406 362 49.0 1e-100 MKSKISEAICRDMEQWFESFHQAPETAMQEYDTSRIIAERLRDFGYEVTEGIGKLGIVAT MQRGEGTRSLGIRAEFDALAIQEENDLPYRSRIPGHAHLCGHDGHTTMLLGAAKQLVESG HFNGKLTLIFQPGEETMQGGAAMVADGLFERFPVDAVYAMHNLPSLPLGTLHFCSGEMMS AVDNWEIKLMGRGSHGSMPELSIDPVVAGASLVLALQSIVSRNVSPWHHSVVTIGAFLAG DTGNTIPDSATLRLSIRNMEPKTRVQVLERIRTITQHQAESYGCAYEITEGQPGAVLINS EEETRYAAEVARKTFGEKQVVYPSARYMSSEDFAFMLQKQRGCYLMIGNGETPMVHNPKF IFNKQLLPIGASYWVALAEDYLR >gi|228307078|gb|ACLR01000208.1| GENE 7 9878 - 11236 602 452 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 12 435 4 423 451 236 33 1e-61 MTERVEQESKRVYIETYGCQMNVADSEIIAAQMQLAGYQLTDQIDEADAVLINTCSVRDN AELRIVRRLDNLNGQRRRSGHPQIVGVLGCMAERVQETLIQNHGVDLVAGPDAYTDLPHL IAAAEAGEPAISIELSKSETYSDVIPIRLPGLHISGFVSIMRGCDNFCTYCIVPYTRGRE RSRDPESIIREVQRMAQEGYREVTLLGQNVNSYCWHTETGASYTFADLLRSVAEAVPTMR IRFTSPHPKDMKDETLEVMSRYHNICSHIHFPLQSGSNRILERMRRRYTREWYLERVERI RDYMPDCGLSTDVFCGFSGETEEDFQETLEVMRLARLDSAFMFKYSERPGTYASHHLVDD VPEEVKVERLNRMIALQNELSLESNERDVGKSFEVLIEGYSKRSHDDFFGRTQQNKVIVF PKGNNQIGKLVTVRVERVTSATMIGSEVKSQE >gi|228307078|gb|ACLR01000208.1| GENE 8 11460 - 11624 115 54 aa, chain + ## HITS:1 COG:MA3446 KEGG:ns NR:ns ## COG: MA3446 COG2768 # Protein_GI_number: 20092258 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S center protein # Organism: Methanosarcina acetivorans str.C2A # 3 53 181 232 360 60 51.0 1e-09 MAHVITDSCVACGTCIDECPVGAISEGDIYSIDADTCIDCGACAAACPSGAIEG >gi|228307078|gb|ACLR01000208.1| GENE 9 11901 - 13802 1860 633 aa, chain + ## HITS:1 COG:HI1439 KEGG:ns NR:ns ## COG: HI1439 COG1154 # Protein_GI_number: 16273346 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Haemophilus influenzae # 2 627 4 615 625 550 45.0 1e-156 MNASDYPILSHIDTPQQLRQLSLSQLPQLCQELRRYELEVLSHVPGHLGSSLGAVELTVA LHYVCRTPYDRIVWDVGHQAYGHKILTGRRDRFESLRQWGGLSGFPLPSESEYDTFPAGH ASNSISAALGMAIAAKLKQEERHVVAVIGDGSMTGGLAFEGLNNVSSYPNDLLIVVNDNN MSIDANVGGLNKYLVDLNTSHAYNTIRYDLYRGLRQMNLINDRRKKNIQRINNSVKSLLT QNHSSFFDGLGIRYFGPVDGHDIEHLVETLRRILPMRGPKILHLRTIKGKGYKPAEENAT VWHAPGCFDVKTGERIKSKRGAHPPKFQEVFGETVTELAAEDKRIVGITPAMPSGSSLNV MMRAFPERSYDVGIAEAHAVTFSAGMAREGMIPFCVIYSSFLQRAYDQIIHDVALPSYHV VLCIDRAGLVGQDGATHQGAFDLAYLCTVPNMTVAAPMNEHYLRHLMRTAYEGQEGPMAI RYPRGEGSLVDWRCTAELLPIGKGRVLHEGGRIALLSIGTIGVTAEEVRERLLAEGIEVA HYDLIFAKPLDEELITTALERYDSIATLEEGTIIGAVGERIAALAQRQGFRGKLIQFGLP DAFIEQGTVAEQQRYCGIDADTIYNRIKAELCE >gi|228307078|gb|ACLR01000208.1| GENE 10 13793 - 15136 1559 447 aa, chain + ## HITS:1 COG:HI0625 KEGG:ns NR:ns ## COG: HI0625 COG0569 # Protein_GI_number: 16272568 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Haemophilus influenzae # 1 446 1 451 458 189 29.0 1e-47 MRIVIAGAGEVGTHLAYRLSGEEQQSTTLIDSDKELLRRVQRKFDAYTIVGDPTKLEDLQ LTEVHDCDLFVSVMPGEAENLLACMLAAQLGAKRTIARINNHRYLADHYRRFFGSLGVDQ LIYPEELAAEEIANSFKHPWARVYVELLNGAFVLVGVKVRQGSILVGRPLSWTKELGDKA FHVVSIKRGEETLIPDGQTIIEHGDVVFFTCLNKDIDLVRQYCDKDQRPVKRVVILGGSL IALRTVSKAPSNIDFHLIERDLERIKEIEDEIPSNVKLYDGDGRDLNLISEIGLDEESIF VALTENSETNILACLAAKRFQVAKTIAKEENIDYIPLAEKLDIGTIINKKVIAAGNIFHA LLGSDTKSIKSLTIAHTDVAELQAKSGSTITERPVKELDIPQGITLGGLVRNGVPMLIDG NMEIQPYDSVVVFCTNTPMEQLSKLFD >gi|228307078|gb|ACLR01000208.1| GENE 11 15201 - 16655 1781 484 aa, chain + ## HITS:1 COG:MA1481 KEGG:ns NR:ns ## COG: MA1481 COG0168 # Protein_GI_number: 20090340 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Methanosarcina acetivorans str.C2A # 22 482 15 474 476 238 35.0 2e-62 MRRINLPFVGSIVGAMCLIECLFLLICIVVSLIMQDHAVAPLLITLGCALLVGLGCLWFG RLKYSDKLGRREAMLAVAVTWLVVALIGMLPFLVGGYLPRFSNALFESVSGFTTTGASTF TSVEHLPKGILFWRSIIQWQGGIGIVVFSLALSPVLGKDIGLLYQAEVTGVDHDRFMPRI KEVAIRLSAVYTLLTLVLIVLLRLTPIPWFDASCVAMTCISTGGFSIYDQPFEAINSPYF ETILMLFMVIGSLNMTLIYFAFKGQIKQLFRDEQTRWFLGIIFVTASLVTLHLVLNSIQP HLGKALRDSFFQIVSLISTTGYLYADYTSWGPFFMLCGIFVMLICGCAGSTAGGLKVIRF VIMSKTLPKEIAHRVSPSLVAPLRINGKSVPDEAVYKVMGFFFGYIALIFLGTFCLTFTG NDFISASTASVSAIGNVGPAFGDYVFNFSSASPFDLIVLSFLMLAGRLELFTVLSLFAPA FWRR >gi|228307078|gb|ACLR01000208.1| GENE 12 16663 - 17748 1284 361 aa, chain - ## HITS:1 COG:FN1030 KEGG:ns NR:ns ## COG: FN1030 COG0795 # Protein_GI_number: 19704365 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Fusobacterium nucleatum # 5 354 1 358 363 97 25.0 3e-20 MRRKLISTVDRYIFIQFLATYFFSIVLILAVAIAFDVTEKLDRLLQPDVPLRAIIWDYYA NFVPYYANLFSPLFVFIAVIYVTSRLAENSEIIAILSCGMSFRRLLKPYMLGAAVIAILT FLLSSFVIPPGNRVRIDFQNRYIKDKRITYANAIQMQVAPETFMFMSYYNDESKVGYTFS MDRFEGKDLKSRVMANSIIYDTLYNWQLQDYTITYFGERQDTLFRGNQLDTIIPITPRDF LVTEGDVEMLTTPELYHSIQQQRMRGAATQLYAIELHKRIAMIPASFILTLMGVSLSARK RKGGMGLALAVGLSLSFIYILFMTVTASFAVTGAMAPVVAAWLPNLVYLGISFVLYRLAP R >gi|228307078|gb|ACLR01000208.1| GENE 13 17844 - 19478 2366 544 aa, chain - ## HITS:1 COG:CAC1816 KEGG:ns NR:ns ## COG: CAC1816 COG1418 # Protein_GI_number: 15895092 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 59 544 36 514 514 384 46.0 1e-106 MQISTYLLILFILLALVVGGGVVWLAVMRLYKQRAERIVKEAEERAERVVFEAHKTKKKE LRESEEILEKAKQDAEILKQQKVIEAKEYALQLKSELEERLADRTAQVQSRETTLQQLEQ TLTARTKQLEDASTELERERKQMTQQEQLVAQKQEELTQAIRTQQAKLEEIGGLSAAQAK EQLIESLRLEARDQAAAYTAEVIEEAKMNASQEARRLIVATIQRIATETAVENSVSVFHI DNDEVKGRIIGREGRNIRALEAATGVEIIVDDTPEAIVLSAFDPVRREIARLALHQLVQD GRIHPARIEEVVDRVSKQIEEEIIETGKRTIIDLGIHGMHPELVRLVGKMKYRSSYGQNL LQHARETANLCATMASELGLNAKKARRAGLLHDIGKVSDEEPELPHAILGMKLCEKYKEK PDICNAVGAHHEEIEMESLIAPIVQICDSISGARPGARHEIVEAYIKRLKDLEQLALSYP GVVKTYAIQAGRELRVIVGADEIDDQATETLSADIAHKIQTEMTYPGQVKITVIRETRAV SYAK >gi|228307078|gb|ACLR01000208.1| GENE 14 19657 - 19992 382 111 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471150|ref|ZP_04055969.1| ## NR: gi|228471150|ref|ZP_04055969.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 4 111 1 108 108 186 100.0 5e-46 MARMEQEGDKTLEDRRDEMQSITLLVDGIAIPIDVPRSEEPYYRRAQHTISALVKKYRTA YPQPAESDEQLHWLMAAVDIAVQCEVLKESQDKTELLNRLSEVNNLLERKL >gi|228307078|gb|ACLR01000208.1| GENE 15 19992 - 20315 400 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471149|ref|ZP_04055968.1| ## NR: gi|228471149|ref|ZP_04055968.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 107 1 107 107 150 100.0 3e-35 MTHDEQLQVDALYQNAMRLLEQRDSLRQEVETQRLEIADLKGRLGELCDELEELKSRNRQ LLMARALIVSGADMGIAKERMTQMIKRMDQSIALLELQHSIDTTQPH >gi|228307078|gb|ACLR01000208.1| GENE 16 20974 - 21663 470 229 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471144|ref|ZP_04055963.1| ## NR: gi|228471144|ref|ZP_04055963.1| hypothetical protein PORUE0001_1583 [Porphyromonas uenonis 60-3] # 1 229 1 229 229 355 100.0 1e-96 FAVSLTKEGEGTITATGASNLNSVAYGTELTIVATPAEGYELTALTANGTDILATKKVVV EGNLTVKATFTKKTFAVTLTSNEHGDITIVEPVNLEAVSYGTTLTVKATGKNAQCELTAL TANGKDILATKSFVVTDVTEVKATFVDHTGVETTVTQQVQLYPNPATDYVIVEGVAPASE VTLHSMTGDRLYAGRADSRGVLQIDLTPYADGVYLVCVAGETYRVVVKR Prediction of potential genes in microbial genomes Time: Fri May 27 10:17:23 2011 Seq name: gi|228307075|gb|ACLR01000209.1| Porphyromonas uenonis 60-3 deg1118640599715, whole genome shotgun sequence Length of sequence - 521 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 85 - 450 397 ## gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein Predicted protein(s) >gi|228307075|gb|ACLR01000209.1| GENE 1 85 - 450 397 121 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469928|ref|ZP_04054862.1| ## NR: gi|228469928|ref|ZP_04054862.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 214 100.0 2e-54 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITTRTIRNWLRTFGVELPNQ STMSKTNKNKDVDPEYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 10:17:29 2011 Seq name: gi|228307073|gb|ACLR01000210.1| Porphyromonas uenonis 60-3 deg1118640599668, whole genome shotgun sequence Length of sequence - 716 bp Number of predicted genes - 2, with homology - 0 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 108 - 167 4.3 1 1 Op 1 . + CDS 208 - 396 84 ## + Term 414 - 447 -0.9 2 1 Op 2 . + CDS 464 - 716 80 ## Predicted protein(s) >gi|228307073|gb|ACLR01000210.1| GENE 1 208 - 396 84 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSPLAFSSRGNRVSPRRSEQILPNFDFVLPNFHFILPNFHFSAPWETFVFSLAMWQFLRE DR >gi|228307073|gb|ACLR01000210.1| GENE 2 464 - 716 80 84 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPKKLVFHAEETRVSCLGKQKSLPRNREVPTLELKSSKGGTVLGAFTKAFVSTRKVAMRT HLRSLPRESQMKSATPERTQEWRM Prediction of potential genes in microbial genomes Time: Fri May 27 10:17:39 2011 Seq name: gi|228307070|gb|ACLR01000211.1| Porphyromonas uenonis 60-3 deg1118640599618, whole genome shotgun sequence Length of sequence - 908 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 26 - 151 86 ## gi|228470933|ref|ZP_04055778.1| putative conserved hypothetical integral membrane protein + Term 216 - 268 16.4 - Term 489 - 524 2.1 2 2 Tu 1 . - CDS 625 - 906 396 ## gi|228469480|ref|ZP_04054484.1| PorS protein Predicted protein(s) >gi|228307070|gb|ACLR01000211.1| GENE 1 26 - 151 86 41 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228470933|ref|ZP_04055778.1| ## NR: gi|228470933|ref|ZP_04055778.1| putative conserved hypothetical integral membrane protein [Porphyromonas uenonis 60-3] # 1 41 565 605 605 87 100.0 2e-16 MDNVRTQKYDYPESVSYMDLVGYYEQLGDYVLNVVQAATKG >gi|228307070|gb|ACLR01000211.1| GENE 2 625 - 906 396 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469480|ref|ZP_04054484.1| ## NR: gi|228469480|ref|ZP_04054484.1| PorS protein [Porphyromonas uenonis 60-3] # 1 93 332 424 424 125 100.0 7e-28 IIRAMLVYLLVLFFTSIINVIPDIIERQRAHLRVQLLNLLLQVALLVLLIYVLRTPFAET VSTYYLVIALYHVVYGGWLLYLVHRHDQRLQQV Prediction of potential genes in microbial genomes Time: Fri May 27 10:17:49 2011 Seq name: gi|228307068|gb|ACLR01000212.1| Porphyromonas uenonis 60-3 deg1118640599576, whole genome shotgun sequence Length of sequence - 542 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 10:17:49 2011 Seq name: gi|228307065|gb|ACLR01000213.1| Porphyromonas uenonis 60-3 deg1118640599629, whole genome shotgun sequence Length of sequence - 851 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 268 67 ## gi|228469919|ref|ZP_04054857.1| conjugative transposon protein TraO 2 1 Op 2 . - CDS 280 - 849 657 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228307065|gb|ACLR01000213.1| GENE 1 1 - 268 67 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469919|ref|ZP_04054857.1| ## NR: gi|228469919|ref|ZP_04054857.1| conjugative transposon protein TraO [Porphyromonas uenonis 60-3] # 1 89 1 89 210 155 100.0 1e-36 MTMTINNPIRYGRLASLPVALLCLLLLALPSVSKAQRAIPHQDGLILSGGVPLTNETPFV QWGNWTARVDYTHYFFHADYLVVGVEYSH >gi|228307065|gb|ACLR01000213.1| GENE 2 280 - 849 657 189 aa, chain - ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 189 128 341 341 234 54.0 1e-60 KEPEKLSLEMVDFLHSGEGNLPSNKADIYFKELGNETPTLVRLLMSTIHKQDKRLVKHIS AKQFGMQFGLKAIYAHNGLLYFHTSIRNTTNMRYQIDYVTFKVVDKAVTTQTAIQETILQ PLRAYNDLAVVAPKSELRTIYALESFSLPEGKILEISLHELNGGRTLTFTVDNKDLVRAR AIDDLELRF Prediction of potential genes in microbial genomes Time: Fri May 27 10:18:26 2011 Seq name: gi|228306983|gb|ACLR01000214.1| Porphyromonas uenonis 60-3 ctg1118640599737, whole genome shotgun sequence Length of sequence - 102573 bp Number of predicted genes - 89, with homology - 83 Number of transcription units - 39, operones - 22 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 144 - 1469 1204 ## COG0232 dGTP triphosphohydrolase 2 1 Op 2 . - CDS 1492 - 2916 1429 ## COG1066 Predicted ATP-dependent serine protease - Prom 3018 - 3077 4.9 + Prom 3207 - 3266 3.2 3 2 Op 1 . + CDS 3492 - 4307 872 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 4 2 Op 2 . + CDS 4315 - 6006 1632 ## COG1785 Alkaline phosphatase + Term 6007 - 6043 3.8 5 3 Tu 1 . - CDS 6039 - 6959 971 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily - Term 6977 - 7035 -0.9 6 4 Tu 1 . - CDS 7081 - 7947 1287 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 8035 - 8094 3.7 - Term 8070 - 8116 6.6 7 5 Op 1 . - CDS 8229 - 10583 2813 ## COG5009 Membrane carboxypeptidase/penicillin-binding protein - Prom 10603 - 10662 4.5 - Term 10617 - 10659 1.3 8 5 Op 2 . - CDS 10666 - 12705 2477 ## COG3855 Uncharacterized protein conserved in bacteria - Prom 12867 - 12926 3.1 - Term 12974 - 13022 7.1 9 6 Op 1 . - CDS 13114 - 15354 2615 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 10 6 Op 2 . - CDS 15381 - 16949 1948 ## COG3488 Predicted thiol oxidoreductase - Prom 17001 - 17060 2.6 11 7 Tu 1 . - CDS 17095 - 18693 1611 ## COG3488 Predicted thiol oxidoreductase - Term 18711 - 18752 1.9 12 8 Op 1 . - CDS 18775 - 19920 1672 ## BVU_2771 putative iron-regulated protein A precursor 13 8 Op 2 . - CDS 19952 - 21250 1418 ## BVU_2772 hypothetical protein - Prom 21482 - 21541 3.0 - Term 21909 - 21963 18.5 14 9 Op 1 21/0.000 - CDS 21999 - 23195 1470 ## COG0282 Acetate kinase 15 9 Op 2 . - CDS 23231 - 24238 1564 ## COG0280 Phosphotransacetylase - Prom 24265 - 24324 2.0 16 10 Op 1 . - CDS 24336 - 24956 588 ## BF3025 hypothetical protein 17 10 Op 2 . - CDS 24949 - 26655 2144 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) - Prom 26684 - 26743 2.8 18 11 Tu 1 . + CDS 26829 - 27041 138 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Term 27114 - 27162 11.1 - Term 27102 - 27149 9.6 19 12 Op 1 . - CDS 27194 - 28165 1091 ## gi|228471193|ref|ZP_04056006.1| hypothetical protein PORUE0001_1355 20 12 Op 2 . - CDS 28199 - 29836 805 ## gi|228471188|ref|ZP_04056001.1| hypothetical protein PORUE0001_1356 21 12 Op 3 . - CDS 29874 - 31925 339 ## BDI_2829 extracellular protease, putative + Prom 32552 - 32611 4.9 22 13 Tu 1 . + CDS 32819 - 33031 181 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 + Term 33184 - 33251 12.4 + TRNA 33154 - 33229 84.4 # Pro CGG 0 0 + Prom 33155 - 33214 77.9 23 14 Op 1 . + CDS 33440 - 34456 1392 ## COG1284 Uncharacterized conserved protein 24 14 Op 2 . + CDS 34489 - 35769 1680 ## COG1774 Uncharacterized homolog of PSP1 25 14 Op 3 . + CDS 35797 - 36294 470 ## gi|228471231|ref|ZP_04056044.1| gliding motility-associated lipoprotein GldH - Term 36305 - 36363 8.1 26 15 Tu 1 . - CDS 36387 - 38000 1513 ## PGN_0458 hypothetical protein - Prom 38129 - 38188 4.0 + Prom 38040 - 38099 3.7 27 16 Tu 1 . + CDS 38178 - 41294 2339 ## PGN_0561 trypsin like proteinase PrtT + Term 41320 - 41363 8.6 28 17 Tu 1 . - CDS 41463 - 41672 69 ## - Prom 41791 - 41850 3.1 29 18 Op 1 . + CDS 41820 - 42665 971 ## COG0796 Glutamate racemase 30 18 Op 2 . + CDS 42695 - 43132 558 ## BVU_2381 hypothetical protein 31 18 Op 3 . + CDS 43230 - 45395 2621 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 32 18 Op 4 . + CDS 45405 - 46256 994 ## COG0320 Lipoate synthase 33 18 Op 5 . + CDS 46337 - 46987 783 ## gi|228471169|ref|ZP_04055982.1| hypothetical protein PORUE0001_1368 + Term 47118 - 47171 15.1 34 19 Tu 1 . + CDS 47173 - 47397 267 ## + Term 47489 - 47527 1.9 35 20 Op 1 40/0.000 - CDS 47485 - 49305 2552 ## COG0642 Signal transduction histidine kinase 36 20 Op 2 7/0.000 - CDS 49336 - 50037 874 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 37 20 Op 3 32/0.000 - CDS 50018 - 50755 642 ## COG0704 Phosphate uptake regulator 38 20 Op 4 41/0.000 - CDS 50825 - 51613 311 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 39 20 Op 5 38/0.000 - CDS 51635 - 52513 1014 ## COG0581 ABC-type phosphate transport system, permease component 40 20 Op 6 39/0.000 - CDS 52520 - 53410 988 ## COG0573 ABC-type phosphate transport system, permease component - Prom 53557 - 53616 1.9 41 20 Op 7 . - CDS 53623 - 54696 1329 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 54876 - 54935 4.1 - Term 55238 - 55284 14.4 42 21 Op 1 . - CDS 55362 - 55514 181 ## PGN_1889 hypothetical protein 43 21 Op 2 . - CDS 55555 - 55743 324 ## PROTEIN SUPPORTED gi|228471192|ref|ZP_04056005.1| ribosomal protein L33 44 21 Op 3 . - CDS 55775 - 56023 420 ## PROTEIN SUPPORTED gi|228471213|ref|ZP_04056026.1| ribosomal protein L28 - Prom 56127 - 56186 3.7 45 22 Op 1 . - CDS 56268 - 56816 688 ## COG0778 Nitroreductase 46 22 Op 2 . - CDS 56833 - 57435 831 ## COG0307 Riboflavin synthase alpha chain 47 22 Op 3 . - CDS 57514 - 58530 777 ## COG3274 Uncharacterized protein conserved in bacteria 48 22 Op 4 . - CDS 58542 - 59630 1266 ## COG0470 ATPase involved in DNA replication 49 22 Op 5 . - CDS 59689 - 61713 2205 ## COG0358 DNA primase (bacterial type) - Prom 61809 - 61868 2.1 - Term 61814 - 61861 8.7 50 23 Tu 1 . - CDS 61889 - 62740 806 ## gi|228471190|ref|ZP_04056003.1| hypothetical protein PORUE0001_1384 - Prom 62830 - 62889 5.1 - Term 63013 - 63052 1.6 51 24 Op 1 . - CDS 63242 - 63418 93 ## 52 24 Op 2 . - CDS 63439 - 63702 97 ## + Prom 63552 - 63611 4.8 53 25 Op 1 . + CDS 63729 - 65969 3313 ## Rmar_1936 hypothetical protein 54 25 Op 2 . + CDS 65990 - 67006 1132 ## gi|228471204|ref|ZP_04056017.1| OmpA family protein + Term 67064 - 67113 10.6 + Prom 67082 - 67141 5.1 55 26 Tu 1 . + CDS 67211 - 68137 573 ## gi|228471227|ref|ZP_04056040.1| conserved hypothetical protein + Term 68169 - 68218 9.5 56 27 Tu 1 . + CDS 68295 - 70889 1827 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 70966 - 71009 6.1 + Prom 70975 - 71034 2.1 57 28 Op 1 . + CDS 71061 - 71735 584 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 58 28 Op 2 . + CDS 71749 - 72402 715 ## COG0491 Zn-dependent hydrolases, including glyoxylases 59 28 Op 3 . + CDS 72408 - 75293 3511 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 60 28 Op 4 . + CDS 75302 - 75727 726 ## COG1970 Large-conductance mechanosensitive channel + Term 75758 - 75808 4.1 61 29 Tu 1 . + CDS 75844 - 76092 277 ## + Prom 76175 - 76234 3.1 62 30 Op 1 . + CDS 76308 - 77741 1622 ## PG1835 putative lipoprotein 63 30 Op 2 . + CDS 77774 - 79048 1724 ## COG0477 Permeases of the major facilitator superfamily 64 30 Op 3 23/0.000 + CDS 79091 - 79846 810 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component 65 30 Op 4 . + CDS 79849 - 80592 187 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 66 30 Op 5 10/0.000 + CDS 80630 - 81544 1012 ## COG0845 Membrane-fusion protein 67 30 Op 6 2/0.000 + CDS 81549 - 82484 1127 ## COG1131 ABC-type multidrug transport system, ATPase component 68 30 Op 7 . + CDS 82488 - 83234 346 ## PROTEIN SUPPORTED gi|225088774|ref|YP_002660041.1| ribosomal protein S16 69 30 Op 8 . + CDS 83380 - 83811 758 ## COG0071 Molecular chaperone (small heat shock protein) + Term 83875 - 83928 13.0 - Term 83803 - 83861 0.4 70 31 Tu 1 . - CDS 83989 - 84189 67 ## 71 32 Op 1 25/0.000 + CDS 84484 - 85263 945 ## COG1192 ATPases involved in chromosome partitioning 72 32 Op 2 . + CDS 85288 - 86184 1004 ## COG1475 Predicted transcriptional regulators 73 32 Op 3 . + CDS 86201 - 87028 748 ## PGN_0253 hypothetical protein 74 32 Op 4 . + CDS 87042 - 88415 1320 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 75 32 Op 5 . + CDS 88454 - 88927 665 ## Apre_1097 thioesterase superfamily protein + Prom 89045 - 89104 1.9 76 33 Op 1 . + CDS 89124 - 90062 1022 ## COG1284 Uncharacterized conserved protein 77 33 Op 2 . + CDS 90066 - 90743 654 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family 78 33 Op 3 . + CDS 90757 - 92142 1364 ## COG0144 tRNA and rRNA cytosine-C5-methylases 79 33 Op 4 . + CDS 92168 - 93139 1303 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 93298 - 93340 -0.9 80 34 Tu 1 . - CDS 93149 - 93382 479 ## gi|228471242|ref|ZP_04056055.1| conserved domain protein - Prom 93462 - 93521 5.3 + Prom 93412 - 93471 3.2 81 35 Op 1 . + CDS 93491 - 95605 3380 ## COG0339 Zn-dependent oligopeptidases 82 35 Op 2 . + CDS 95679 - 95933 246 ## gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 83 36 Op 1 . + CDS 96084 - 96839 971 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 84 36 Op 2 . + CDS 96841 - 98196 1131 ## COG0044 Dihydroorotase and related cyclic amidohydrolases + Term 98217 - 98276 -0.3 + Prom 98217 - 98276 3.1 85 37 Op 1 2/0.000 + CDS 98372 - 98788 674 ## COG0346 Lactoylglutathione lyase and related lyases 86 37 Op 2 . + CDS 98822 - 100375 2331 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) 87 37 Op 3 . + CDS 100388 - 100621 397 ## gi|228471236|ref|ZP_04056049.1| conserved hypothetical protein 88 38 Tu 1 . + CDS 100687 - 101124 560 ## COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit + Term 101189 - 101240 -1.0 + Prom 101197 - 101256 4.7 89 39 Tu 1 . + CDS 101327 - 102394 1391 ## gi|228471228|ref|ZP_04056041.1| hypothetical protein PORUE0001_1418 + Term 102419 - 102471 11.1 Predicted protein(s) >gi|228306983|gb|ACLR01000214.1| GENE 1 144 - 1469 1204 441 aa, chain - ## HITS:1 COG:sll0398 KEGG:ns NR:ns ## COG: sll0398 COG0232 # Protein_GI_number: 16331575 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Synechocystis # 1 438 1 440 440 279 36.0 6e-75 MNWDQLISNRRFGAAAPQLSGGMEMRTEFDRDYDRLIFSAPFRRLQNKAQIFPLPKSIFV HNRLTHSLEVSCVGRSLGNYIACRLTDNQDTPHRGSIATVVSAACLAHDMGNPPFGHSGE RAIRAYFTEGNGRQWYDAVVGEGHSWEDFAYFEGNANGFRLLTHQFEGRRPGGFALTYTT LAAIVKYPWSSARAPESGKFGYFQSERATYLDVANYLGILPVDPASGHYVRHPLVYLVEA ADDICYQVMDVEDAYKLRILSYERTVDLLLRYFPTDSHDHVLATMEAIGDRNERIAYLRA KAINMLVEACAEVFIEHEEEILRGAFAGTLVSRMPERLYAAYRANSAVAQSEIYTARAVI DVELAGHRIFSELIDKVMHSLLHPDDAYSRTLLSLVSSQYNLHEASIYGKLQCTLDYISG MTDPYALDLYRRITGMSLPAI >gi|228306983|gb|ACLR01000214.1| GENE 2 1492 - 2916 1429 474 aa, chain - ## HITS:1 COG:BS_sms KEGG:ns NR:ns ## COG: BS_sms COG1066 # Protein_GI_number: 16077155 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Bacillus subtilis # 1 468 1 454 458 403 43.0 1e-112 MAKVKTIYKCSACGATYSRWQGQCNECQEWNTIEEQLAQPETTSGRSTPAQEIQRKLKQI HEGATWDGLHSEEVRPIQLIEGSEESRVDLHDEELNRLLGGGLVQGSFTLLGGEPGIGKS TLIFQTVLRCPELKTLYVSGEESAQQLKLRADRIGIHSEQCLIYCDTDLDNILLKALQIA PDLLVIDSIQTVTTARSESSPGSISQIKECANLLLHFAKSSGIPVIVIGHINKEGSIAGP KILEHTVDTVLQFEGDKQHLYRILRSHKNRFGSTDDLGIYEMNSSGLVAVSNPSEHLISG NTEGLSGVVVACAVEGIRPIMIETQALVSSAIYNNPQRSTTGFDLRRLNMLLAVLEKRAG FKLIQKDVFLNITGGIKINDTAVDLAVLCAVLSSNLDIAVPSKTCMTGEVGLAGEIRAVS RIERRIAEAHRLGFTRILIPKANAKSLQQRNYDIEIVPCDRVDHAFRTLFSQRQ >gi|228306983|gb|ACLR01000214.1| GENE 3 3492 - 4307 872 271 aa, chain + ## HITS:1 COG:PA0592 KEGG:ns NR:ns ## COG: PA0592 COG0030 # Protein_GI_number: 15595789 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Pseudomonas aeruginosa # 5 264 8 265 268 154 39.0 2e-37 MESVRAKKYLGQHFLTDLGAAQRIADSVADYLGTPILEVGPGMGVLTQPLLEAGHDLQVI DIDHESIEYLHQHFPQLSQEGRIIEGDFLKLPAEELIPGRADTPFVVIGNYPYNISSQIF FRILELRERIPAVAGMLQHEVAQRLCASPGGRDYGILSVLLQCWYDCDYLFKVSKRDFNP PPKVDGGVMIARRNGRTSLPCDETNFKRVVKTAFGQRRKMLRNALQSLFGKEFPYADHDI FTLRAERLSVEDFIGLTLMYEALPQENTTTL >gi|228306983|gb|ACLR01000214.1| GENE 4 4315 - 6006 1632 563 aa, chain + ## HITS:1 COG:MA4354 KEGG:ns NR:ns ## COG: MA4354 COG1785 # Protein_GI_number: 20093141 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Methanosarcina acetivorans str.C2A # 28 555 52 555 585 244 31.0 3e-64 MKSFSHILLLLLASLSLVAQQQKYPLPEHPAKNVILLISDGTSLPAVSLARWYQRALNPQ AQHLSLDPYLSGSVITYCSNAPIGDSAPTTSCYMTGVPSIDGFIATYPYSEPHNDLVPLD SSWAYRPVVTLMEAAKQTQGKRIGVVCTCEFPHATPADCTAHSSSRKLYKSIVPQMVDNG VDILLGGGTSLMTSELKKRLNRQGIALYLDDLAAMRTHRGGGMWALFDKMDMPYDLDRRS LGDTLRYPSLAEMTETAIRNLENPNGFVLMVEGSKVDWAAHANDPVAMATEFLAFDKAVA VALDYAQRDGNTIILVTADHGNSGMSIGRVDRGYARLTLDELIMPLTRFRYSSVELGRKT SQTALSHLADSLYLWTSIRPSEEELAEINAVEDYACSTLSAEQRKAKYAEYGWSQKYRLK EYFVDWMKRHLLIGFTTHGHTGEEVFLASYTPQRLTPIRGCVTNIDLHNYMRTQLGLKQT MLELSEEYYAPHDALFPQAQYEITGDQPEEKRIMIHYQGHQIELRAYQRRAWVDGVEREL PTPVIYVSETNKFYLSRALAQQL >gi|228306983|gb|ACLR01000214.1| GENE 5 6039 - 6959 971 306 aa, chain - ## HITS:1 COG:FN1744 KEGG:ns NR:ns ## COG: FN1744 COG0697 # Protein_GI_number: 19705065 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Fusobacterium nucleatum # 13 293 4 285 293 72 23.0 9e-13 MTDKTSTSATDWLGYLMGLISSATFGLIPLLSIPVLSQGVSEGTVLMYRFLIAALIVGSI VVIRRESLRVSLRSFLILLALSVLYFFSSFLLIEGYQHMPSGVATVLHFSYPTFVVLLMF LVFRQRINVLQGLAVLLALSGVSLISGFFESDVTAISLRPLLTVLFSGFCYATYIVILRH ARLEPMSSFKLTTYVMGLSTILFALFCKATGASLLLDNETQWIYTALLALIPTVCANITL VWAVQRIGSTPTAIMGALEPLTAVVVGAFALGEELSLGQGIGIGVVLMAVLLLVVSPLLM RRLKRA >gi|228306983|gb|ACLR01000214.1| GENE 6 7081 - 7947 1287 288 aa, chain - ## HITS:1 COG:SA1390 KEGG:ns NR:ns ## COG: SA1390 COG0568 # Protein_GI_number: 15927141 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Staphylococcus aureus N315 # 23 287 102 367 368 208 43.0 1e-53 MAMRQLKINQSITNRESASLDRYLQEIGRTSLISPEEEVELAREIHRGNRRALNKLVEAN LRFVVSVAKQYQNQGLSLPDLINEGNIGMIKAAEKFDETRGFKFISYAVWWIRQSILQAL AEQSRIVRLPLNQVGLQQKMNKAIVKFEQLNGRRPSPQEIADELELPEDKIREALKVQGK HQSLDAPFVEGEDNNMLDVLVNEDTPSTDSSLINESLSAEIDRILEQLGDREAEVLRCFF GIGCPEMTLEEIGERTKLSRERVRQIKEKAIRRLKQSDRCEYLKAYLG >gi|228306983|gb|ACLR01000214.1| GENE 7 8229 - 10583 2813 784 aa, chain - ## HITS:1 COG:AGc2475 KEGG:ns NR:ns ## COG: AGc2475 COG5009 # Protein_GI_number: 15888667 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 12 753 4 748 815 266 26.0 2e-70 MKGKVIKVLWWLFGAFWALVFITFVLIWFGIIGYMPDVEQLQNPIDKYASVLISDDGVQL GSYAHGSTNRIYVGYDELAEPLVQALVATEDVRFYKHSGVDVRGVGRAIVKRGMLRNTAS GGGSTITQQLAKQLYSPHAKSSLQRLLQKPIEWVIAIKLERNYTKEEIIAMYLNQFDFLY NAVGIRSAAQTYFGKKPSELTLTESAMLVGMCKNPSLYNPVLHADSDAPVNRRNTVLLQM KKAGYISEETYKKAIAEPLKIHFTRNKQSDGLAPYYKEYVRLLLTAKKPKKSDYSKWSQE QYTIDSILWETQPIYGWCQKNKKSDGSHYDLYADGLKIYGTIDSRMQQYAEEAVQKHMSE FVQPNFNRELKGSKLAPYSSDLTAQQRKEAIERALRNTDRWRSLKKLGMSPEEIRKTFDE KRKMRVWSYNGWIDKEMTPRDSVLYYKQFLHTGFMAMNPHNGNILAYVGDVDFRTFKYDM VSQGRRQVGSTIKPFLYSLSMIQGISPCEQVMHQPITLYDANGKAWTPRNTGAKRVGEMV SIKWGLQNSSNWVTAYLMGRTSPYTFVRLLHSFGIKGYIDPVVSVALGTPDVTVSEMVAA YSAFVNQGIRVDPIPVTRIEDRYGNVVATFTANLTEVLPARAALQMLDMMRAVIDGGTGG RLRFRHNLTMPLGGKTGTTQRNSDGWFIGFSPEIVAGCWVGGEERSIHFRSMAYGQGASA ALPIFGYFMKAVYADPTLGYSAHTPFNVPAGFSPCGAQETVDIHEPLSDAVDEAVDDVME DILE >gi|228306983|gb|ACLR01000214.1| GENE 8 10666 - 12705 2477 679 aa, chain - ## HITS:1 COG:CAC1572 KEGG:ns NR:ns ## COG: CAC1572 COG3855 # Protein_GI_number: 15894850 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 669 2 661 665 717 54.0 0 MMQDKIDLQAAKDDLRYLQLLSNQFRNSAEVSTEIINLQAILSLPKGTEHFLADVHGEHE AFDHVLKNASGSVMRKIREVFAGQMMELQMRELATLIYYPQAKLEQLHEVGEIDEEWYKV TLNRLIKVCRKVGEKYTRSKVRKALPPQYSYIIQELLHEDGVNPNKSAYISSIISTIIST GKAEDFICAISATIKRLVIDRLHIVGDIYDRGPGAQYIMDTLLDYHNVDIQWGNHDMLWM GAAAGNDACIACVIRIALRYANLDTIEDGYGINLMPLSRLASEVYAGDPCTYFKPKLGDS DASYDEKGIYLISQMHKAISIIQFKLEHQLIARHPEWQMQERDLLHKIDFEAGTVDLSHT NPNEDYGVHEMLDMNFPTIDPKDPYRLTPQEEEVMDRLRRSFATSERLHTHIDAFYRLGS MYLVCNGNLLYHASMPLDASGQLKAVSVLDSQPLRGRALLDEIDRVVRLAHPSRHNHPKH EAAVDYIFYLWCGPDSPLFDKSAMTTFERYFVADKKTHTETKGYYFKYRQDRETIEMILR EFGLEGEDCHVINGHVPVKVAKGEKPIAAGGKLMIIDGGFSRAYQSSTGIAGYTLIYNSQ GMQLVQHEPFTTMRRAVELMEDIKSVTVISERTTHRMLVADTDVGAELQQQVNDLEKLLK AFNAGLIKERKSLPQINAK >gi|228306983|gb|ACLR01000214.1| GENE 9 13114 - 15354 2615 746 aa, chain - ## HITS:1 COG:Cj1013c_2 KEGG:ns NR:ns ## COG: Cj1013c_2 COG0755 # Protein_GI_number: 15792340 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Campylobacter jejuni # 538 746 33 252 287 147 38.0 7e-35 MVWRKLPFILLLITVAVLAAATVVEKLYGTPFVQEHWYGSPLFTILWVLLSCAGLIYILR AKLYRRFWIWMIHVSLLVILLGAGLTSWTAIHGRIKLQEGATPTDRYQSDQGETLTLPFE VALERFDLTYYTGTQFPLDYQSNLIIQDGERSQSLRGAVSMNRIFRYRFYRFYQSGYDPE TTSSILSIAYDPWGIAISYLGYALLAISLVGGMFARRHRVRQLLKQALVSPVAMLLILLV GGTLSAEAKAPATPLPKTIPASVAKSFGELYILYNNRICPLGTYAQEFTEKLYGRSSYRG LSAEQVLAGWIFYYDNWVDEPMIRIKDRSIRKLLECYEGQRVSYRQFFDLQGNYRLESLL DNYIQHPDQPGRKALFEAHEKCQVIQSVGLGESLSIFPVQSHGRIVWYHPASTDLPAEMP LDQWTFVRKGFNYLSELIIMQEWDEAQEFLVKLRQYQLKEGGESCPSALRFRSEIYYNQL SPYIGLLAKILATVGILLFIWTAYQLSVGRLQDPPLVKWGFWGILYASMLYLTLMVILRW IVSGYVPLSNGFETMQALAWIVLLLTILTGRKHRVLIPFGLLMGGLSLLVASFGGSNPQI TLLMPVLHSPLLSIHVLVIMIAYSLLAFMMLNSCMALILSRRPAIGTHLEALSRLLLYPA VALLAIGIFIGAVWANVSWGRYWSWDPKEVWALITLIIYALPLHSESLRCFRSQRFLHVY LLIAFVSVLVTYFGVNFFLGGMHSYA >gi|228306983|gb|ACLR01000214.1| GENE 10 15381 - 16949 1948 522 aa, chain - ## HITS:1 COG:mlr5527 KEGG:ns NR:ns ## COG: mlr5527 COG3488 # Protein_GI_number: 13474608 # Func_class: C Energy production and conversion # Function: Predicted thiol oxidoreductase # Organism: Mesorhizobium loti # 352 522 372 533 533 109 37.0 1e-23 MKHLTTQLALLALILTCLTACQQDCGTDTPQTLSEEYYSGGKLGTTFNNTSSCFEQPTEA IALAGLDANFKQGERRFETAHAAGDVPGLTFTGLGPLYHRTSCEACHPGYGHGRRVTRYN SEQMGNGCLIIVTDKEGNIATSLGLVPMTAALPPFKPMIDEKKMTIDWRSYTDEWGNKFD DGETYDLIYPEVHLPADALYSPLEVKGKPFPLDQAVVTLESTIGIYGTGLLDAISDEDIR QQYIKEAPHTPLNPAIWAGNDFAPTGVDPAGHPMRFDYACDFTKLSANVSLWEVTNIITP MFRKFYIPEAYARTASKDPDVQAQFYKYFPERKKTGNVEKDIYDFFTATDLPVEMDAQAC YDLMVWIRGLAVPAARDIDAPDVQRGKQLFTEIGCATCHRPSWTTGDDVVVDVYGLTEGG KKAMPRYPKQKIWPYTDMIQHKLHMQNDIRTGWCRTTPLWGRGLSQKASGHQDRLHDCRA RNVIEAIMWHGAKDSDARFTVEKFRKLNRQDREAVVKFINAV >gi|228306983|gb|ACLR01000214.1| GENE 11 17095 - 18693 1611 532 aa, chain - ## HITS:1 COG:AGc491 KEGG:ns NR:ns ## COG: AGc491 COG3488 # Protein_GI_number: 15887636 # Func_class: C Energy production and conversion # Function: Predicted thiol oxidoreductase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 19 532 50 513 513 114 26.0 4e-25 MNKVLSICSLIGCLALLSACSSDCPDSSETNPYEEQYYSGGKLGTAFNNTATCYEQFTPA VEEAGLVARFKRGERLFENPFDTSTDPNFPLRGLGPLWLRASCIACHPGYGHGARQTEYN SNIIGNGYLLVLTDQNDNYLSSLTGMPQTQAAPPFKAPLDERKIKIDWLPYTDEWGNKFD DGETYDLIYPEVTIPEDAFYVPLQAKGKDIPYSDLRVRLESTIGIYGTGLLDAISDEDLR AQYQTEEKHGANLNPTVWKNGDFVRYYVNKKQGDGTKYLPRYTYGLTRGSIQDGPGANAI WNITNVTRSDRRYHYMTTAYAKVASEDPDVQAKFYSYYPEWRKSGDVKKDIYDYLTSSEL PADMTDEEYINFMVWHRGLAVPSARDADSEEFQQGKKLFEEMGCATCHRPTWTTGEDKIR DPNNFFVGARANLLPRYPHQKIWPYTDMIQHQLQMKNNIRTGWCRTTPLWGRGLSMKATG ASDRLHDCRARTVIEAIMWHGAKNSDARQSIEKFRKLSKEERKAVVTFIESI >gi|228306983|gb|ACLR01000214.1| GENE 12 18775 - 19920 1672 381 aa, chain - ## HITS:1 COG:no KEGG:BVU_2771 NR:ns ## KEGG: BVU_2771 # Name: not_defined # Def: putative iron-regulated protein A precursor # Organism: B.vulgatus # Pathway: not_defined # 6 376 3 390 393 224 37.0 4e-57 MNKYTNVFKMLLLSVVGILLVSCQESDEPKAKQVDPEQTAILEQFVHGVVVPTYKSLADN TIELSGICQELMKSPSQELVDKACKKWVEARAYWELSEAILFGAAGDYNIDPHIDSWPLQ KNQLDNILQNKDLLDELKEEGADAKGFASLGYGLLGFHAVEYMIFRDGKARKVAEITEPE RIYNAAVAEDLARQATRLEASWAGVDKITAAKKKTLEDAELLPTMDYGEIMIAAGEQGNT TYKSQKDAFVQILQGASDITDEVGNTKITDPVNSGNVLDVESWYSWNSIEDFTDNLRSVR NAYYGSLDGTAHKHSMASYMAQHHPELDKEIRSAIDNAIKTVAAMPAPFRNNLTKDATKP AIDACNALLEKIDAAIEAVQK >gi|228306983|gb|ACLR01000214.1| GENE 13 19952 - 21250 1418 432 aa, chain - ## HITS:1 COG:no KEGG:BVU_2772 NR:ns ## KEGG: BVU_2772 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 2 430 3 442 444 499 54.0 1e-139 MKRFISYLLCGLVLCTVQLSEAQTVDTLSQTSAPAPRRLTIGGYGEAVASRMFYSNNFKR YTDAALYKDARSFGQVDLPHVVFFVGYDFGHGWSLGSEIEFEHGGTESAVEIEEEETGEY ESEIERGGEVALEQFWLQKSFSPALNLRIGHMVVPVGATNASHMPTEFFTVYRPEGENTI LPCTWHETGIGLWGKLPNWRYEVMGIAGLDADRFNNKDWIHGGSGSPYEFKMATNYACAM RVDNYSVRNLRLSLSGYVGTSGRNTLNATNKYDHIKGLVCIGAFDFQYANPHLILRGNVD YGHLGDSMEITKANRTTRKDSPSPKNSVAKAALAAGLEGGYDLFSASAKLRQLKQRLYLF GRYDYYDSMFQVVPNMTDELEWERQKFTVGLNYYPIPDIVVKAEYSHRMLHKQFNDEPTV SLGIAYFGMFHF >gi|228306983|gb|ACLR01000214.1| GENE 14 21999 - 23195 1470 398 aa, chain - ## HITS:1 COG:TM0274 KEGG:ns NR:ns ## COG: TM0274 COG0282 # Protein_GI_number: 15643044 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Thermotoga maritima # 1 398 1 399 403 452 57.0 1e-127 MIVLVLNCGSSSVKYSLYDMPEARILASGGIEKLGLPDSFIKFKTTDGKKVQIDRPLPEH TVAVEFILEILTKSEYAVLDSVDQIEAVGHRLVHGGEAINKSVLINDEVIEQVKRVSDLA PLHNPPSLKGIDAITKLLPKVQQVAVFDTAFHQTMPAYTYMYALPYEYYEKYGVRRYGFH GTSHRYISHRACEILGKDFDKTRIITCHIGNGASIAAVCNGKVLDTSMGLTPTDGLMMGT RCGSIDPGIVPFIMEHEKMTPSDFSTMVNKKSGVMGISGVSSDMRDVEQAAEAGNGRAKL ALEMYRYRIKKYIGAYAAAMGGVDVIVFTGGVGENDQTTRESVVSGLEFMGVEFDSAVNR SSRGEEKVLSKPSSRVTVLCVPTDEELMIARDTMDLVK >gi|228306983|gb|ACLR01000214.1| GENE 15 23231 - 24238 1564 335 aa, chain - ## HITS:1 COG:CAC1742 KEGG:ns NR:ns ## COG: CAC1742 COG0280 # Protein_GI_number: 15895019 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Clostridium acetobutylicum # 1 330 1 329 333 350 54.0 2e-96 MELLQKNVQRAKANKQRIVLPEGLEPRTLQAADRILADGIAHIILLGNPAEIQAKAAELG LKHIDQAEIIDPQNHARREAYRDLLMELRKSKGMTREQADELVVNPLYLACLMIKSGDAD GEVAGAHNTTGNVLRPALQLIKTRPGLKVVSGAFLIFSPLKEYGENGFFIFADCAVTPNP DSNELAQIAIASADTARSIGDMEPRVALLSYSTKGSAKSEMIDKVTEAYKIAKEMAPDLL IDGELQADAAIVSKIAELKAPESPVAGKANVLVFPNLEVGNVAYKLVERLGRATAVGPIL QGMAAPVNDLSRGCSVDDVYNVITITCNQAIAAKK >gi|228306983|gb|ACLR01000214.1| GENE 16 24336 - 24956 588 206 aa, chain - ## HITS:1 COG:no KEGG:BF3025 NR:ns ## KEGG: BF3025 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 9 192 4 180 188 142 36.0 6e-33 MGSITEPAYHIEGTLRQLPLEAYMAEYFDPERFLALCEHCPTYLTNWSCPPFAFDVREAL AHYRYAHILVHRVTPDEQSWTACQPAEVGDYCFRLMRAVRDWIDPLLYQLERQHAGSRLF TAGRCRLCQPQECTRRAGEPCRHPDQMRSSLESWGFDLSGTTERLAGIPMVWGEEGHPPR YLTMVSALLSAEPVPERDFERLEVRL >gi|228306983|gb|ACLR01000214.1| GENE 17 24949 - 26655 2144 568 aa, chain - ## HITS:1 COG:FN0867_1 KEGG:ns NR:ns ## COG: FN0867_1 COG1022 # Protein_GI_number: 19704202 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Fusobacterium nucleatum # 33 567 22 518 606 194 28.0 5e-49 MYPDNLIKAYEASFREHFRQPALSDYATGYTISYRDLALQIAHLHYVYKETGLQRGDRVA LMGADSVHWCVIFMATITYGAVIVPILQDFNVEDAKTIINHSEAKLLFIDDLILSKLNPE EDLPMVQTIFDLKKITWRYARSGMPYDYKQLLPFAPFVARFYPKGFRRTDIVYPEVGNDE LVVINYTSGTTGFSKGVLITAGNLAGNAIYADSLDLMFSGEQIICFLPLAHTYSCAFNML AALYIGVHTYILGKVPSPKILMQAFAEIRPVLIISVPLILEKIYKQSIVPVIERPAIKAL LRIPLLRKLVYRVIRKKLTEGLGGNFREVIVGGAPLSKEVGLFLHRIGFPLTVGYGMTEC APLISYSNHRHWVPLSAGRSLPHMDIRVEVPEDFDQPLAPGVGEIQVRGDNVCLGYNKLP EINKHLFTSDGWMRTGDLGRLDKRGNLFILGRSKTMILGANGQNIYPEEIEAKLNNLHFV AESLVYQKNGRLEALVYPDELAAKQAGLTMEEAWEQIKAQRNHLNAKLGSYEMVTKFVLQ RTPFIKSPKRSIKRHLYKDGIEVTQTNG >gi|228306983|gb|ACLR01000214.1| GENE 18 26829 - 27041 138 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 14 69 18 73 91 67 64.0 3e-10 MATHRSPLMPISTEEIGKRQGANENSPRNREIKVRKNEMKLRKKDFEVPKNFSIPPWIFG DFHRGVAQFP >gi|228306983|gb|ACLR01000214.1| GENE 19 27194 - 28165 1091 323 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471193|ref|ZP_04056006.1| ## NR: gi|228471193|ref|ZP_04056006.1| hypothetical protein PORUE0001_1355 [Porphyromonas uenonis 60-3] # 1 323 1 323 323 630 100.0 1e-179 MKTLISWSTPLLLLVLFAATSCQSQKPTPKPQKEKEAISYKLPIVDYDFKGSIDDIVAFE TALGHTLDKSQSDATTLTFSTGKKEFSETVYRLQNKRIVEVYQPSTSGEAVEDILPQLTK ELKEKGWSEWPMPVSNGQCDAAFQLSREINGAQSQIGSVVVHTRTNNVKKTYPSITFIFS RIAEDIDPNTVVLPDIYLDGLDKTKEEIKKYYEPKGCDFKTSAAFLDVSVDNPAYKDRVS FFFQEGNPKCHSIIITAVNFGINKSKNLPKQLEKLGFEFDSEEGKAISKYFNEEKQIWAF VRFYPLSQLDQPNITFTRHPKNF >gi|228306983|gb|ACLR01000214.1| GENE 20 28199 - 29836 805 545 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471188|ref|ZP_04056001.1| ## NR: gi|228471188|ref|ZP_04056001.1| hypothetical protein PORUE0001_1356 [Porphyromonas uenonis 60-3] # 21 545 1 525 525 1023 100.0 0 MKQSSSASCSILLTLVALLTMSLKGYAQDGQWVTVIHETFDAFSQGTNTAPTQPEATLLI KDQTLDKFDLTKSKSLYQAGGAILFYDAEGASLFTKEMNLLGDKLRISCKVKAFSAMSPL AFKLTSEGAEQETQFIDNDYSKDWQSMTFEMPAGSEKCALRISTKPGFFGTVTGVFLDEI TVEVLNPREVTTDPQLIVSESDVTFLDSEVNDESYAKEITVKGYNLTELPTYEIEGANAD EAKFTASGDLTKDGGKVSVNVTHLKPGVHTAQLVITSGSLKHTVNLKGRGLGGNPIEGMP QDNPKVELQESFAKAGLPEGWKTFITAGYEDWSIQPSSFDKTNFVATMNATKSSLEDFIC ASFLITPCMTNPKGYQPEISYDLAVMKSNELFASSTASVYCILADGSMDIKAPLFTVNYD QQAEYATLKNIKVKAPDTLAGKYFVGFYYQGATAASRSVGIEVDNIQISSKEKPTSVEEA TVAPAKVWRSGDQIYFEGLNGVELQVYSITGTLLVTFPVADTGAVTLRDANQHCLVRYGT SSLVL >gi|228306983|gb|ACLR01000214.1| GENE 21 29874 - 31925 339 683 aa, chain - ## HITS:1 COG:no KEGG:BDI_2829 NR:ns ## KEGG: BDI_2829 # Name: not_defined # Def: extracellular protease, putative # Organism: P.distasonis # Pathway: not_defined # 2 265 216 496 864 219 43.0 4e-55 MVNVNCEEGRAWQNEKKGIAFIQTKVGEYIGVCSGTLLNNTAEDGAPYLITAAHCAIPEE GQKSSPEDLDQWVFYFHYEKEACDNSSVATLNAVSLVGAELLAVSPLKGGTDGLFLRLKS EIPASYNLYLNGWSRTTSLPQSGVGLHHPSGDATKISTFTTPPKVEPWNEDSQPTAHINV AYQGTSHGHAVTEKGSSGSGLFNSEHLLVGTLTGGDASCTHLEGTNLYGRFSSHFESMKL SRWLAPGQSDLISLSGRYMGGENLAEIQDLLVWMTQKGLHVQWSKPLVPTEKVQSYLIYV DNKKLQEVASDAPFPLVLDFQEPGDHYLSVVTQYASGESRPMGAYFSNRMRHIEVPISDE HTDSSLTWLKPRLEQTWSFAEPAINTAELHRVGDISVVTYFYAGVWYGADQLRRAALAHS YITAIRYVPISSSVKSYIYIRQGDREYSQKITDPMSLDVLTTIQLKEPFVLNDREPIFVG LKFRGDTKTPFIAMTSQPRILGRSMMASLDGKNFFEYKTLSHSLAMETVVTASLSKGEPQ EVIRCAMPSTFPQIVGYRIMYGDKEVVTLMSSEEQCSYSPSLTDYPDRSKFRVFAVIDGQ KPTALISQSHGETRPFLWSNQGRLHLAQAESITELALYDLMGKCLYRITPEQVSDISLSS GTYVVRIGLRDGSVLVQKITHRN >gi|228306983|gb|ACLR01000214.1| GENE 22 32819 - 33031 181 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 13 65 17 69 91 73 71.0 3e-12 MATYRSPLMPISPEEIGNLQGENENSPRNREIKVRKNEMKLRKKDFEVPKNFSIPPWIFG DFHRGVAQIP >gi|228306983|gb|ACLR01000214.1| GENE 23 33440 - 34456 1392 338 aa, chain + ## HITS:1 COG:TM0177 KEGG:ns NR:ns ## COG: TM0177 COG1284 # Protein_GI_number: 15642951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 19 332 5 283 283 128 28.0 1e-29 MTTEKPLHYPDPRKSTDFLRDILIIFAGVVLYTFGWTAFILSQDITSGGLAGIVTIVQLA TNIPATIPYYILNGGLLILAIFVLGLHFSLKTIIAVGMLFLTIPVGQALFTPMVGQGLEV YNNLPHFLTEMLPNFGPLLAPDEPFVALIIGASICGAGLGLVFSANGSTGGTDIIVAIVN KYSTLSLGRAMIFMDAIIVTTGAVVSHFFGPQYNWGTALGKLAFSFIEITIVGQMLDYIM NANKQSVQLLIVSTKYEQISEAVTQSLGYGCTILHGEGGYSHQPTHVVLVTIRKNMRGSL YQVINAVDPNAFISESTVHGVYGQGFDSLEKVTGRKKK >gi|228306983|gb|ACLR01000214.1| GENE 24 34489 - 35769 1680 426 aa, chain + ## HITS:1 COG:BH0045 KEGG:ns NR:ns ## COG: BH0045 COG1774 # Protein_GI_number: 15612608 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus halodurans # 42 279 2 231 275 163 39.0 8e-40 MEYKPDLLDKIDCPRCKGVGSRCCKLSTFDWLADLPDGVQQQEIVEVQFKNTRKNYYRNV DHLDLKRGDYVVVEADSGGYDVGMVALTGTLVSTRIRANHDEQYVDNAKAIYRKARPADM DHYREAKLREHPTMIESREIATSLGLDMKIGDVEYQADGTRAIFYYIADQRVDFRKLIRL LADAFHIRVEMRQIGARQEAGRIGGIGPCGRALCCSTWLSRFNSVSTAAARFQNLAQNSL KLTGQCGKLKCCTNYEVDVYMEAKKSFPSSRTTLETESGTYYFNKCDLLAGEITYSLAPK SLEEPETISVERAKEVIEMNQRGEIPETLSDQQEAPKKPKDILFDNAINRFDQPKKRKRR KSKKRERFSSDTPRAKEANLESDNTEEPLDGQSASEESDTQSPRKPRRKPQAGNRRRRPR TKPQEE >gi|228306983|gb|ACLR01000214.1| GENE 25 35797 - 36294 470 165 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471231|ref|ZP_04056044.1| ## NR: gi|228471231|ref|ZP_04056044.1| gliding motility-associated lipoprotein GldH [Porphyromonas uenonis 60-3] # 1 165 1 165 165 308 100.0 1e-82 MSRGCRGGVVGWIAVLSILTLLTLGSCHYAAYQKQMQTEEIPESGWSAGRNISFDSFVEH PRTPHTLYLYIRYNSRYAYTTLPLTIRLRSALGWSATTTLALPLTEEPGVWSGEGYALRQ QLYKVNTLLTPPHPGLYTIELSQATGQDTLTGIETVGVAWVATEL >gi|228306983|gb|ACLR01000214.1| GENE 26 36387 - 38000 1513 537 aa, chain - ## HITS:1 COG:no KEGG:PGN_0458 NR:ns ## KEGG: PGN_0458 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 277 1 271 508 89 27.0 5e-16 MTRKLLSSLLLLLALSCALTAQKTGCKITQEPKALPAEACSFSIYGTSPNGRYIYGGSPN STAFCYDTQRDTTSLFLSETGAEKYMIYAVSDDGEIFVAQDEVGAFVYNMAQEKLHEIKT PESDWSDVRPVYVTPDAKHLVGYVMDPTYAQESMAIPIYGTRSEDGSWTIKKLPMLEKDY LNNKPNYTQAFFCSDDGKKILGRQNTHNGTDRPLFWQLDDQGQYQCSTPCDSFLYNLEAP LPGPQPEWDDYVTADYETDPDTYAQQEAKYNEAYAAWEKAYNKAVKRAVPDLAWQIMSPA SGYWMISIQEMVGEGDDMVTITYPGSLSVADGSISRLNIKEAYGLGGVGRTNDGGWICYP DGSLDPSDRNTYVLYSDGKKMTMLEYLKQITGTDLSPAFTYSYTPYGKTEQESITDMGAI ALSADGKTLTSCAVDMTGAKYYRSAYLRMDKHFLVQPLAIAPIEIERSNLSVLWQGDALH FSEPATGTLYLYDTTGRLLESYRLLDSSKLFLTELAQGLYVGQLVTERGVSTVRFVR >gi|228306983|gb|ACLR01000214.1| GENE 27 38178 - 41294 2339 1038 aa, chain + ## HITS:1 COG:no KEGG:PGN_0561 NR:ns ## KEGG: PGN_0561 # Name: prtT # Def: trypsin like proteinase PrtT # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 63 397 41 385 840 220 36.0 2e-55 MTQRFFFLALSVILSMSTLWAKPRTETQARLIAEQYTIQRLSSSELASLRSGTTPLLTLV SAPSADTDGMTVRHQMMAPTVQDQATAYYVYNIGTERGYVMVSGDDLLPEVIAYADAGAF LPDEEQPEHIASFLAQVRASLQYLVAQGKPVVMPRTSQLRPEGVNPLLDRIQWGQDYPFN THCPYKNGGQSVVGCVATALSQILRYHQWPDDKGVGICEYKEKDGTEHRVDFSQTTYNWA KMPKRPNRYEPQDVTDALSTLCYHVGVLSHMQYSPAGSGTFSQYPKEGLSQYLKYSKNIQ LLNRMNYKIADWMDIIAKELNEERPVYYAGASSTVGHAFVCDGYRQNGYFHINFGWNGMA DGFFLLYAITPRTLGTGGGTSYDGYNNLQEIMIGIEPDRDGSSERTVSEDISALALAVSC DDNKTIALKDVVLELGSAVQYKTQLCLAITPTQEGAQSKYGALSEEQELEFHNYYIYSEK SLHPVPSVDLRDLGLPTQNASYVVTLAYAGNGGKLIPVRHYNGGVSEVTVTFDSDGKAHC TSPQMKPRLALSEIKTSDLRGYSRSSVTLFIDNLSQEEYFSSWDCYFEDMKGDHTFLGTP SALLSPQVKQEIPLKVPRLSLPAGTKGNILLKGSYIDADGSDQDYIIRSRQCLEVLPAKD PIYKASSLKCVAQRSLTGAIEYAPGVHDMTFEVSNLGKLSRGRMLIQWALVQTNLKDSDS IRHEGQGYIETLKRGETKQYTIKSSQWTDVAKGSDYYLIVQLYDIVEDFGVNRYGEKEGE LNLPIAIVDQLSPAIDEEHYVSLEKESDRAYPLKVNVATPSMIRLNGLSLTGMSQKDGVY HINGRASDGRTAIIGAFSSLEFDQTDSSTGIIAADFSHASPLLQHVSICHSKIRGEAMTE MLQSLPDRSATTPGTIALIDTSRPDLEGSICTPEQVALAAQRGWTVTDQQGNAYTAIDTP AEAMQSDWAIYPMPVRDQMTVVGLPATSSVTLYTLQGERLLEAVTSASGQLQISLAHLPS GAYILNTALGSRRVVVAH >gi|228306983|gb|ACLR01000214.1| GENE 28 41463 - 41672 69 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MALERIESLCNSQPLTADHRHSAQSSEEIEIASVENENPSRRNKKIHRNFEIFLPKFHFI LPNFYFGPR >gi|228306983|gb|ACLR01000214.1| GENE 29 41820 - 42665 971 281 aa, chain + ## HITS:1 COG:SPy0361 KEGG:ns NR:ns ## COG: SPy0361 COG0796 # Protein_GI_number: 15674511 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Streptococcus pyogenes M1 GAS # 7 278 5 264 264 165 36.0 7e-41 MQQIEGPIGVFDSGYGGLTILRKLREQLPQYDFVYLGDNARSPYGSRSMHVVYQFTREAV EKLFDLGCPLVILACNTASAKALRQIQQEDLPKLDGGSMRRRVLGIIRPTVECIDTLTGT KHVGILATEGTVSSESYVAEIHKLYPDMTVVQEACPLWVPIVETGESDSPGTDFFVRKHL ERLLAQDEKIDTIILGCTHYPILMPKIQRLLTPSIKVVAQGELVAKSLEEYLVRHPEMEA QLTRGGTTRYYTTEQTERFSRTASIFFDTPIAVEHLSLSQY >gi|228306983|gb|ACLR01000214.1| GENE 30 42695 - 43132 558 145 aa, chain + ## HITS:1 COG:no KEGG:BVU_2381 NR:ns ## KEGG: BVU_2381 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 145 1 143 263 66 29.0 3e-10 MKRIYFVALLLLTSLLCVSCGTCKSSNDVNLATLDGSSWVLTHMDGIKVNKDAIQTANIN ISKGRISGRAACNSYGAECLVYSDGRIKIGDITSTLMACDRLMYERIFLASLEEAKTFRM SGSNKLMLYSTHDASGQPSLTFKRK >gi|228306983|gb|ACLR01000214.1| GENE 31 43230 - 45395 2621 721 aa, chain + ## HITS:1 COG:CC2154 KEGG:ns NR:ns ## COG: CC2154 COG1506 # Protein_GI_number: 16126393 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Caulobacter vibrioides # 136 721 147 736 738 300 32.0 5e-81 MRIRTLFTTLALLCSLTLVAQQQREITLPEVTSGAFAARGAGNGFRSLPDGKHYTLISDD YQRIVKYEYATGRAVDTLFDIAKARECDIKAIWDYDIAPSGHHILIYTDIKPIYRRSYTL RATHYDVRRNLCEPLTEGDIMIPTFSPDGRMVAFVRDNNIFIKKFDFNSEVQVTTEGKRN EVINGTTDWVYEEEFSTTRLMEWSPQSDFLAFVRSDESQVKAYSMPIYGDDLYPTDYVYK YPKVGEQNSTVSLHLYNLDLKRTDRVDLPLDADGYIPRIVFTGWGSDLAAVTINRLQNDL KVYRINPKSRTPRLTLREQDPRYINNEFINSMRFVPDGIVMLSERDGSTQLYKYGTNGAL QKRLTQGNWDIINFYGCDSEGNVYYQAADQTPTQRRVLKTTPRGKTTVLAGEAGINRASF TQDYSYFINSYSNAKTPAITTIRTTKEGKVIRTLEDNAQLVAKLKGYDYNDKEFFTIEVA PGRTLHGWMIRPPHFDASKRYPTVMHQYSGPDSQEVLDQFYIGWEYALAQAGYVVVCVDG RGTGGRGTEWRKCTYRELGLRESSDQIAAAEALPKQFNYIDGSRIAIFGWSFGGYNTLMS LCRGKVFRAGVAVAPVTDWRFYDTVYTERFMATPQVNNKGYEASSVLSIAHNLHGELLVI HGTADDNVHLQNTMRLATELVKADIPFEMATYTDKDHSIYGGNNRQHLYSRIIEFLDRKL K >gi|228306983|gb|ACLR01000214.1| GENE 32 45405 - 46256 994 283 aa, chain + ## HITS:1 COG:BH3435 KEGG:ns NR:ns ## COG: BH3435 COG0320 # Protein_GI_number: 15615997 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Bacillus halodurans # 2 282 4 287 303 311 53.0 6e-85 MKQPHIRKPEWLKIKLGSDVTYDETRAVLQKHCLHTICTSGRCPNQGECWSRGTATFMIG GAVCTRACKFCNTETGRPLPLDPAEPRHVAESVRALGLKHAVVTSVDRDDLPDKGSAHWV ETIRQIRELCPSVTIEVLIPDFDGQAELIAPILQERPEVVAHNMETVRRLTPIVRSRATY DCSISVLAQIAEAGLPAKTGLMLGLGETQEEILETMDDLRQVQCSILTLGQYLQPTRRHY PVQEYVHPDRFTELREIALGKGFRHVESGPLVRSSYHAERHLE >gi|228306983|gb|ACLR01000214.1| GENE 33 46337 - 46987 783 216 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471169|ref|ZP_04055982.1| ## NR: gi|228471169|ref|ZP_04055982.1| hypothetical protein PORUE0001_1368 [Porphyromonas uenonis 60-3] # 1 216 1 216 216 403 100.0 1e-111 MMKQKVYVLLVALATLTLFSSCNQECEPEQQKTTEATRYLGKVSSDKKIMPIYLPVLTDE LAKDENRASLRKANEQYGWTFFKDDTEEDHRMLTMLAPRNDTGYTDSRLIERLFYHYKKG DVYFDCWSKPIFKKDIVKAAHEGSAEDIKLLKDILTLYGFTEQLKPSAFKKSGQLNFEGY NMTQFPEGPMWGSIYCTQLQESVYYLEMQVVQKSPK >gi|228306983|gb|ACLR01000214.1| GENE 34 47173 - 47397 267 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEALLRNAFIYALSRKLDNSSVEILGWPARNEKILRNFEIFLPKFHFILPNFYFPVPWGI FVCSLKFTNFLRKD >gi|228306983|gb|ACLR01000214.1| GENE 35 47485 - 49305 2552 606 aa, chain - ## HITS:1 COG:BH3156 KEGG:ns NR:ns ## COG: BH3156 COG0642 # Protein_GI_number: 15615718 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 95 601 78 586 589 136 25.0 1e-31 MSQYNYKSKVFISATLLFILFGGIIYFVQRASEKEIKTKALEEYLEQATDCVNSYIIDYT THPQKRQPDTLSNFSHLPDPQALGHFLAYLPNKLRFTIINLRGDVYFDNFTQGPIPENHL SRAELQQANLHGTGTSKRYSETLGEDFYYFAKEYQDQGYYIRVAIPYHIDYVNYFRSNHF FLLLIVGIFSLALLAVVFFTDQFSRSVRKLHDFVAKAQAGGEYESVTFPKSEIGELGEQL KKTFKMLEESKTRYEIEREKLIQHFASSDAGISFFSAERKFIYANSHFIQNLNTLVDTPT FIIDERILDYPELYQVKTLLAGIESDSDTAPRSTRYIIDRDGSHLEVRAQLFPDNSFEVV LTNVTKKENDRRLKHDMTNSIAHELRTPVTCARGYLETILNQPLPEEKQRYFIERTYNQM IRLSQLISDVSMITKLEEASDLYALQELTPYSVVEEVKAALEIKLQEAQMTICNRIPVQT TVQANHSLLYAVFANLTENSIRYAGTGTTIEIEQTMEDERYYYFTFADNGPGIPESESLA KIFDRFYRIDGGRSREMGGSGLGLSIVRNAIRFHGGEISAKNRPTGGLEFFFSLAKSAPD KTPREH >gi|228306983|gb|ACLR01000214.1| GENE 36 49336 - 50037 874 233 aa, chain - ## HITS:1 COG:CC0294 KEGG:ns NR:ns ## COG: CC0294 COG0745 # Protein_GI_number: 16124549 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Caulobacter vibrioides # 8 210 5 206 230 161 44.0 1e-39 MDKKKFKLLIVDDEEDLREILTFNLASEGYQVSTAANAEEALKMPLEEYHLLILDVMMPG MNGFKLAELIRRDKKLTTPIIFLTAKGTENDLLTGFNIGADDYMAKPFSIKELQARIQAI LMRFLQSGPDFGESQIEIGTLLIDLDAKQVFVHGELIELTKKELEILVLLARDPGKVFSR EEILDRVWREDVFVLERTIDVHITRIRKKLRSGGIKIINRSGFGYCLVEEEPQ >gi|228306983|gb|ACLR01000214.1| GENE 37 50018 - 50755 642 245 aa, chain - ## HITS:1 COG:aq_906 KEGG:ns NR:ns ## COG: aq_906 COG0704 # Protein_GI_number: 15606237 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Aquifex aeolicus # 41 223 38 213 221 84 34.0 2e-16 MSPNMDHHVVLIKEDFNVLNKVIARQVEAIQLLLSGIVEPEAYEHIEMNETIIDSLEVKI RSEVINGIILYAPRASEARRMFALHDMTSYLERIGDLLLNVANFTRAIDMGNGLYLQYAD TLREMLAETYRMVTDAVTSFFAGDSELSRSVIGRDTHIDDLHYQINDSLPQALLDTEQSP DVDSIQASLAISSIAYNLERIGDNATNIAEAAIFHSEGKNLLHAKSQKVEIPTEQELENY GQEEV >gi|228306983|gb|ACLR01000214.1| GENE 38 50825 - 51613 311 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 14 257 1 239 245 124 33 2e-27 MTLNAIQTTTPDVVLQLDNVSIWYTSEKSAVTNVSAEIHDHEITAIMGPSGCGKSTLLRA INRMHELYPGIRTDGRILLQGENILEKDPMVVRRMAGMVFQQPNPFPTMSIADNVMAGYK LNGIKVSKAQREEILTSSLQSVGLWEEVKDRLDKRGSFLSGGQQQRLCIARALALRPRLL LMDEPTSALDPIATNRIEELILELKKEIAILIVTHNMGQAARISDRSMFMYLGELVEYDR TDKMFTNPSDQRTEDYLQGNFG >gi|228306983|gb|ACLR01000214.1| GENE 39 51635 - 52513 1014 292 aa, chain - ## HITS:1 COG:sll0682 KEGG:ns NR:ns ## COG: sll0682 COG0581 # Protein_GI_number: 16331541 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Synechocystis # 25 292 32 287 287 162 38.0 1e-39 MASLKVRQGWDRTVYLVNIVLACITVIPLFLIIGKIVMEGYEQINWDFFTKTAPTAVEAM MAKRANTIEGSRTILPGGIANGIVGTLLMTFVASIIAIPIGLLGGIYLSENRSSHLASVV RFVTDLLQGTPSIVIGIIVYAWIVLPMRGYSALAGAVALAIMMLPLIIRSTEETLARLPK SFKESALALGCSYRKMVLKILLPSAMGGLLTGILLAVSRIIGETAPLIMTALGSARISWT LDTPSSAVPLLIWEFYSDPNLQELIWSSSLFLLLLVLLLNFIAKRISARTRY >gi|228306983|gb|ACLR01000214.1| GENE 40 52520 - 53410 988 296 aa, chain - ## HITS:1 COG:PM0435 KEGG:ns NR:ns ## COG: PM0435 COG0573 # Protein_GI_number: 15602300 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Pasteurella multocida # 16 291 21 310 320 184 39.0 1e-46 MSTLVRKASRPIGDKIFRGLLMSSGLLVLLICLAMLISLISNSMEAFSEFGFFRFICSSE WDPTAGREQYGALPFIVGTVVTSILALILCVPFSLPVALFIGEYFKGKRIAGVIRSLTDL LAGIPSIVYGLWGFYTLRPLIDMIDGPQGNGYGILTSVLILTIMIIPYASSLTAEFVMLT PKSLKEAAYSLGATRTEVIGSVILPNARSGIIAAYILALGRALGETMAVTMLIGNTDKVP TSLFDTGQSMASLIANQFNEAHGLKLSSLIAIALVLFLITAIINGIVKIILNKQRA >gi|228306983|gb|ACLR01000214.1| GENE 41 53623 - 54696 1329 357 aa, chain - ## HITS:1 COG:DRA0157 KEGG:ns NR:ns ## COG: DRA0157 COG0226 # Protein_GI_number: 15807826 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Deinococcus radiodurans # 15 349 74 403 403 251 44.0 1e-66 MNKSTLQALVLIPIALMTASCAGKGGRVTQLDAAGATFPLPYYTEAFKAYEELSGIHVNY GAVGSGGGIRSLKDEVVDFAASDAFLSDEELAEMPREVIHIPTCMGAVVIAYNCPEITSL QLTGEIIANIYLGKITRWNDPAIAAINPDQKLPDKEISPVYRSDGSGTTNVFSDYLTKVS PDWAAQIGTGKSLKWPTGMAAKGNPGVAGVIAQTDGALGYVGSEYSFSLDIPTAKVQNQA GNFVLPSLESISAAAAGEVAPDTRQMITNSAHPEAYPISCLTWLITYKDLSYSNHSEAEA TETARLLNWMLSDKAQAITSQIHFAPLSPEMLAAAKAQLAQLTYGGNPIDLTSSPKE >gi|228306983|gb|ACLR01000214.1| GENE 42 55362 - 55514 181 50 aa, chain - ## HITS:1 COG:no KEGG:PGN_1889 NR:ns ## KEGG: PGN_1889 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 49 1 49 49 70 85.0 2e-11 MAKKSVATFRTGDGRSYSKVIKMVKSPKTGAYTFQEEMVPNDHVQDFLKK >gi|228306983|gb|ACLR01000214.1| GENE 43 55555 - 55743 324 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228471192|ref|ZP_04056005.1| ribosomal protein L33 [Porphyromonas uenonis 60-3] # 1 62 1 62 62 129 100 6e-29 MSKKGKGDRVQVILECTEHKESGMPGTSRYVTTKNRKNTTQRLELKKYNPILKRYTLHRE IK >gi|228306983|gb|ACLR01000214.1| GENE 44 55775 - 56023 420 82 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228471213|ref|ZP_04056026.1| ribosomal protein L28 [Porphyromonas uenonis 60-3] # 1 82 1 82 82 166 100 4e-40 MSKICQITGKKAMVGNNVSHSKRRTKRTFDVNLFRKKFYWPEEDRWISLKVSAAGLRLIN RVGLNEALRRASDAGYLSIKSK >gi|228306983|gb|ACLR01000214.1| GENE 45 56268 - 56816 688 182 aa, chain - ## HITS:1 COG:CAC1418 KEGG:ns NR:ns ## COG: CAC1418 COG0778 # Protein_GI_number: 15894697 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 12 182 7 179 179 74 28.0 8e-14 MKAEDLYALYRERQSDRKFADRPVPQEVLERILHNAMLAPSATNQQPWSIVAVSEPETVQ RVGQAVIKGVTNMNKFALEAPAHLLIVAERGRWIARMGSRVMGVDYRPIDLGILAAHIVL AAQAEGVGSCILGWINDTALRKELGIPSNRQVVLDILLGYSEQPTREKKRKRPDEVIHWN QW >gi|228306983|gb|ACLR01000214.1| GENE 46 56833 - 57435 831 200 aa, chain - ## HITS:1 COG:L0164 KEGG:ns NR:ns ## COG: L0164 COG0307 # Protein_GI_number: 15672976 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Lactococcus lactis # 1 196 1 192 216 151 42.0 8e-37 MFSGIVEGMAQVRRLTREGSNLHITLACSFAAELQIDQSIAHNGVCLTVVSLEEGGYTVT AVQETLDRSNLGLLQVGDYVNVERSMMLGGRLDGHIVQGHVDQTARCTAIREMDGSHYFT FAYEVDREMMRQGYMTVEKGSVTVNGVSLTVCNSQENSFEVAIIPYTLEHTNFKYFKEGS VVNLEFDILGKYIARLRSFD >gi|228306983|gb|ACLR01000214.1| GENE 47 57514 - 58530 777 338 aa, chain - ## HITS:1 COG:RSc3292 KEGG:ns NR:ns ## COG: RSc3292 COG3274 # Protein_GI_number: 17548009 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 11 338 4 336 336 95 29.0 1e-19 MSEQTLRHQGLDLLRLLSVVMVIGIHTAGGYFIGEASLAERWQAAPWYALSVGAVPLFVM MSGAFMLSSERQIGSLAHFYKRRVGRKILLPLVVWSVGYYFWHCAKEQTWLAFQWYHLWY LVMLAGLYVVTPMLRWLCERIERSDSPTYGGNRGLLILTLGSYLVALTIDVYYRSYDVRQ VCLLWWVQYLPYFLAGHLLARTASRLPSRSWLLTLFIGSMLLHGALLIYVPYQLLERVGV NFQPLVVLKVLSLFALCYSWRPKGRLLVSASTLYPYVMGIYLVHFAVLQVVFKLFELFLP TVTACLVVSLPLRILLIALISLGVTALMRKVPLLRQLV >gi|228306983|gb|ACLR01000214.1| GENE 48 58542 - 59630 1266 362 aa, chain - ## HITS:1 COG:RSc1785 KEGG:ns NR:ns ## COG: RSc1785 COG0470 # Protein_GI_number: 17546504 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Ralstonia solanacearum # 23 211 19 187 336 93 33.0 6e-19 MQFADIYGYQALKQQFAHLTHSGQMPHAVLLEIQEGYPGLHLAWAWAQYIQCQSPTDEDS CGACASCKKVAAIAHPDVIFVYPVVKAAQDETPTERYFDEWRTFLERSPYITDQDWLEVL EAGNSQPVIYVNEINSLLSRLSVTTTEGGWRTIIIYQPERMNDAAANKLLKSLEEPPAET LFILVSAHSDRLLDTILSRVQRFELPPMTEAEMREALTAMHPELATDALEAMIPLVDGNL SDALRLLDSSASQDKLQELAQQWYDATLRADILRLKLLSEEVDKAGREGAVAFLKLLMQQ VGQQWHRALRGEARVGELRVNNKAMGACYRLLEEAMREIRGNVLTKMVLFDTFLRMLLAL RN >gi|228306983|gb|ACLR01000214.1| GENE 49 59689 - 61713 2205 674 aa, chain - ## HITS:1 COG:BH1375 KEGG:ns NR:ns ## COG: BH1375 COG0358 # Protein_GI_number: 15613938 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Bacillus halodurans # 3 440 7 433 599 281 36.0 4e-75 MDEQTKQLIIDTARIEDVVSDFVQLRRKGSGFVGLCPFHKDRHPSFIVTPSKNICKCFAC GAGGTPVSFIMKIQNCSFVDALRYLAQKYNIPVPEREMTEEEQQRQNEREALYLANEVAA KFFTEQLLSQEEGLDVALPYFTQRGVRSEAIQTFGLGYSPSDRRALAKYVEEHGYDMESF VATGLLYAPSEGRPSADRYHERVIFPIYNVGGRVVGFGGRTMRKADKIAKYINSPESFIY DKSRELYGLYQAKRAIAQRDQGIIVEGYLDVIAMHQVGIENVVATSGTALTESQIQLLRR FSRNVLVLFDGDEAGVKAALRSVDMLLAEGMQIKLLVLPDGEDPDEFVSKRSRAEVEEYF AAHQQDFLTFKSQLYAPQMAQDPQLKTQLMRDILQSIATIPDSLERIVYIQQMSQMYGVA EDLLLQQIKQERFSRGRVYQYAPPEAATPEESAPEETPQEVSPLDAPMSNEALDLIRLVV RYGERMLKISVQDEEADESAEPTVIRVSVANFVYQELKQDDIVIEHPLVKRILNDSNKMM LEELDVSGGESERTCGSFLCNSEIPQVSALAVDLYATPYRLSRKAREELQMPDDENEKVP DEWVQEMTFKVLYTYKLAYAEERCQQISQQIQTLQQEHPEADYESYQPLLQELSTWQEIR KMLGQFSGQRVVIS >gi|228306983|gb|ACLR01000214.1| GENE 50 61889 - 62740 806 283 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471190|ref|ZP_04056003.1| ## NR: gi|228471190|ref|ZP_04056003.1| hypothetical protein PORUE0001_1384 [Porphyromonas uenonis 60-3] # 31 283 1 253 253 502 100.0 1e-140 MKQCGFFYCKGLAKLSCLVASLLLLLASCYMPKSEVSCKNFVFETLSPRYLSVNEYQSRS RLDTLTEAEALRPRTFKCRVVDGQIRNVDYLTLTGVNTDNGWFFGKEIGDTAYYRRIPVV QREDLYFKKKYTKYYIPDRALYWEFQDISIVSNNASFGADYPVGSDLTPIILFGFPSLME FIENGYKGPYTTEHLIRANDKEAWANLKVFETGKPTLIIDRLPTEVIDGGKPTITIRMKF IDKGAILKNKNASWDQYMEIRDDIKPFKETFDLPVTLQLDIQQ >gi|228306983|gb|ACLR01000214.1| GENE 51 63242 - 63418 93 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAISPEEIGNLHGANENSPRNREIKVRKNEMKLRKKEIKVPKNFSFSRWIIKDLHGEI >gi|228306983|gb|ACLR01000214.1| GENE 52 63439 - 63702 97 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSDWCRNMVTLIPPKSEANVSQKCLNGEVDHLSYRQRYKKTATRHNFCPNNLTFSVMFD SSITCSSSSFGVVVLQRVLIPLHKLTL >gi|228306983|gb|ACLR01000214.1| GENE 53 63729 - 65969 3313 746 aa, chain + ## HITS:1 COG:no KEGG:Rmar_1936 NR:ns ## KEGG: Rmar_1936 # Name: not_defined # Def: hypothetical protein # Organism: R.marinus # Pathway: not_defined # 24 363 21 344 754 83 27.0 3e-14 MNKKILLLCTALVALLSFNVAKAQVKDASVTVGGGVEYQFLDKALNIDNAMFWGVRAGFG FGPIVELRGVYDRSFGINSKLNGGQWNIDPVFQNKMSDRRIDIERYGAELKFNLLDGYIL APYVLVGGGVQNMKYELPIADDKIEMMKADHLYFSGALGFKINLTRRVALNLSGNYLGFR TDLLNPYVDITKAKADKNGLALMNNFSARAGLSIYLGGYNPTGGNEVSRAYRKFFSNGFR GMVFTVEPSMLYMDFNKNSYWNSRDSWFYGGQLGLDFNSTFGVRAFYYQAGQPGKKPNFK FDKERAMYGGYFTGRLNLPRGVTPYVNLGAGYLDAKLSEKATELDKANLHDVVFAMAGVG LEVPLFRYISVFGSANFIAHPAPGVKTTSVTNKSEILAKNVAYQFGVRFNLGKPARHYQF DTEESTETQDRVNEIREYYYYGQDNDDEYVRMTPEEIEEMAQRIIDRNKATKTEHSKCKS KDQCKSKGQFHRQPNDDALTPLERELVHALIGNSPQYVAQQQMLQQQAAQCPKAAAQATE AQDNEQIAKQNEEILNRLDALDRKIEQSEQVRTQQPATTTTIVTPPTHPAYTTPATTTPS ADATPADNDSNSLVRLNSVGLLIGTNLVKPQDANLISTFAVGARAYMPISNTNLDFIPEL FVGFGKKTTIGVSGNVAYNFNFKELGDFVPYLGAGIGWFTDTKLGANFLLGTAYKLPQLN SAVFLDYGFRHSLRNHSISLGYRFYF >gi|228306983|gb|ACLR01000214.1| GENE 54 65990 - 67006 1132 338 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471204|ref|ZP_04056017.1| ## NR: gi|228471204|ref|ZP_04056017.1| OmpA family protein [Porphyromonas uenonis 60-3] # 1 338 1 338 338 589 100.0 1e-167 MTKKSIIVGLCVILLSAAVSTSVEAQQDKRQAPRQKRDRTERVDKGERDRREKVVVMTKQ ELATLVNAIVTAAEENDATEEVRKPACPHAQQRDITITDDKDRDLLYLLLQYHNLNAMKA SVPTFAQPAMQAGQPISWGGQLYYPAGSSNLVVTQGAQGAPVANDADKIKALEDELARLK EAQQNPQRNDDQIAQQLAALRQQIDELEKAPAQAPVYNYDNRRVIHQDRSRNNVQLSRSV FFKVNSDVLNAEGLEAVRNVADFVIGDPRALVLVYGYASIDGPVAFNNRLAAKRAASVIK ALQAAGVPAAAIKRYDNGVDTTPSKRTDARRVDMDVIY >gi|228306983|gb|ACLR01000214.1| GENE 55 67211 - 68137 573 308 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471227|ref|ZP_04056040.1| ## NR: gi|228471227|ref|ZP_04056040.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 308 1 308 308 577 100.0 1e-163 MFIKTLPLSALLLALMLSLIACHKEPGEKPKPSTEPTQTTLSVTPDRLSLRIGKHAQLSV SATPADATLRYTYKSTNETVATVSNQGLVTAVAEGHCTITIAAGEARVTVPVQVLPAVQI DAKRYIGADDTDRRFVPIYIPILAEIEQRKDEIQEANEAKDWLLEGDRKVPRSPSYALSF IAPSQGDNYTDIRYIKRIAYRYTPGRTDRSFLLLFTAYLSNEDILIKAYQKGKDSEAYNL LKSIAQGYGFTEDFRMTKDDKKGPLFNAYCRGRYPEGDLWLCIQSVPASDGAGFGLRLQI ATSTAPKR >gi|228306983|gb|ACLR01000214.1| GENE 56 68295 - 70889 1827 864 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 859 1 806 815 708 45 0.0 MNIDKYTIKSQRVIQTMIAQARQQGHQALEPICLLDALLREGRDVVEYVATKAGAYMHQI EQAVAQQLERLPHVSGGEPYLSNQTNQVLTQSEQIASDMGDQYIAVEHILLALLKVSSEA RQLLLDAGLNYADAESAIRELRKGRKVDSATSDQQYNALGKYAINLCERAREGKLDPVIG RDEEIRRVLQILSRRTKNNPILVGEPGVGKTAIAEGLAHRVIRGDVPENLKDKLIYSLDM GALIAGAKYQGEFEERLKSVVNEVTASNGEVILFIDEIHTLVGAGASQGAMDAANILKPA LARGELRAIGATTLDEYRKYFEKDKALERRFQMVMVDEPDEMSSISILRGLKERYENHHK VRIQDDAILAAVQLSERYITDRFLPDKAIDLVDEAAARLRIQIDSMPEELDELERRIKQL EIEREAIKREHDEPKLAALSKQIADLEEERNALAAQWHGEKDLVNEAQQLKVEREQATIE ADKAERLGDYGRVAELRYGRLKEIDDQIAQINQKLAEQRASGTALITEEVTAEDIADIVA RWTGIPVSRMLMSERDKLLNLEDELHKRVVGQDEAITAIADAVRRSRAGLQDPNRPIGSF IFLGTTGVGKTEVARALAECLFDDEHMMTRIDMSEYQEKFSATRLIGAPPGYVGYDEGGQ LTEAIRRKPYSVVLFDEIEKAHPDVFNLLLQVLDDGRLTDNKGHVVNFKNTIIIMTSNLG SDLIRHNFEHIDEQNREEVIERTEEEVKTLLKQTIRPEFVNRIDETIVFTPLTKAQIAQI VRLQLDKVARTLQENGVTLHYSDAAIDLLSERGYDPEFGARPVKRVIQRLVLNELSKALL AGTVERTKPITLDVGTDGQLTFVD >gi|228306983|gb|ACLR01000214.1| GENE 57 71061 - 71735 584 224 aa, chain + ## HITS:1 COG:L180469 KEGG:ns NR:ns ## COG: L180469 COG0357 # Protein_GI_number: 15673325 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Lactococcus lactis # 8 202 2 193 238 95 32.0 5e-20 MPITPTTTPTEQLDRLLRQFPALSPTATQQLTALYPLYREWNARINVISRRDIDNLYLHH VMHSLALAWLLPDEPTSFTIADVGCGGGFPSIPLAILFPQYQFLLIDSIAKKLHVAQSIA DEIGLTNVSTHHTRVESCDLCCDYVVSRAAMPLELLHKYTQHMLHGSTAPRTGIYCLKGG DLSEEIAQAGVTAQLTAISTLADYPDYYQDKWIVYVAKQGKRTN >gi|228306983|gb|ACLR01000214.1| GENE 58 71749 - 72402 715 217 aa, chain + ## HITS:1 COG:PM0272 KEGG:ns NR:ns ## COG: PM0272 COG0491 # Protein_GI_number: 15602137 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Pasteurella multocida # 14 216 12 208 209 126 36.0 3e-29 MNCEVSTFVCNIIQENTYLLSTNDGHAAIIDCGCATVSEQKRLAQRIEQWGLSVDLLLFT HLHFDHLWGLPWALQAFPEAKAYAHPVELAQAVSPEAQMRAWGFEVPEEAFDLSQIRPLP SDQPLRLGEIAIYNLFVPGHTAGHVAYYLPSEHIVFTGDVLFRGDIGRSDLPGGDYQTLL HSIKTQLRPLPDDTIVYPGHGPHTTIHNEKINNPYIN >gi|228306983|gb|ACLR01000214.1| GENE 59 72408 - 75293 3511 961 aa, chain + ## HITS:1 COG:SPAC13G6.06c_2 KEGG:ns NR:ns ## COG: SPAC13G6.06c_2 COG1003 # Protein_GI_number: 19113744 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Schizosaccharomyces pombe # 466 955 2 491 491 529 52.0 1e-150 MDTRNFAYRHIGISEADLPEMLRVVGVDSVDALMHKVYPEGIFLEKPLDLPEPMTERELS EHLFELGSRNRIFTSYIGMGWYDTVTPQPIIRNVLENPVWYTSYTPYQAEVSQGRLEALF NFQTVITDLTGLPLTNCSLLDEATAGAEAALMLYNERSREQKKAGANQLFIDKRVFASTQ AVIQTRVPQQGMEIVVGDYETFDFTDKVFGAIIQYPDEKGSIHCYHDFMERAKATGTRVA VAADLMSLVLLTPPGEWGADIVFGSAQRFGIPMYFGGPSAGYLASTMDFKRTIPGRIIGI SKDTYGHSAYRLALQTREQHIKRERATSNICTAQALLATMSSFYAVYHGPEGLRDIAHRI HAYAGYLAEQLVAMGYKQLNDNFFDTLYIELPEGLSAEKLREIALDCQVNLRYYEDGRHI GISIDETTLESDLSVLLYIFSQLQGKEGDIEGVEVDDTKVYFDKKFARQSDFLQYETFQK YHSETELMRYIKRLDRKDISLAQSMISLGSCTMKLNAASEVAQLSNPQFAYIHPYAPDDQ VEGYLEMIRNLSALLCEITGMKGASLQPNSGAAGEYTGLRVIRSYLQATGQGARDLIILP ASAHGTNPASAVQAGFDTITIRTADNGDIDMDHFMELTEQYKDRIAAIMITYPSTHGIFE SNIRTIIDRIHEIGGQVYMDGANLNAQVGWTNPGYMGADVCHLNLHKSFAIPHGGGGPGV GPICVAEHLVPHLPKHVERWSDGTNQVSAAPYGSAGVIVITYAYIRLLGYEGLRQATAMA ILNANYLKARFQDNYGVVYTGDRGFVGHEMILDCRGVKAQAGVDEGDISKRLMDFGYHAP TVSFPVHGTLMIEPTESESKAELDRFVAVMNQIYQEAQDIASGKADAEDNVIKNAPHPQY EVCADEWHHAYTRKQAAFALPYLEDNKFWVNVSRIDNGFGDRNLIPAFCACTPEIIDELT K >gi|228306983|gb|ACLR01000214.1| GENE 60 75302 - 75727 726 141 aa, chain + ## HITS:1 COG:PM1564 KEGG:ns NR:ns ## COG: PM1564 COG1970 # Protein_GI_number: 15603429 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Pasteurella multocida # 3 139 2 133 133 137 58.0 6e-33 MASFKKEFKEFVLRGNVMDMAVGIIIGGAFGKIVSSLVDDILMPIIGLFTGGINFTELAY EIKPAEFNEFGEEIVSATTLNYGLFIQNVVDFLIIALVIFIMIRAINSLRRKHEEPAAPA PEPSDEVKLLTEIRNLLDKKQ >gi|228306983|gb|ACLR01000214.1| GENE 61 75844 - 76092 277 82 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSPTLLSRKSSNSSVEITKSPRRNQKILRNFEIFLPKFHFILPNFYFPVPWRIFASSLE IFDFLVRNCNQRRCRSCYQVSL >gi|228306983|gb|ACLR01000214.1| GENE 62 76308 - 77741 1622 477 aa, chain + ## HITS:1 COG:no KEGG:PG1835 NR:ns ## KEGG: PG1835 # Name: not_defined # Def: putative lipoprotein # Organism: P.gingivalis # Pathway: not_defined # 13 462 6 439 455 249 36.0 2e-64 MNRTLLHILQTPLLICILCTLGLTSCNDAYSTLGGSLRPERDLVTARGDSLIFRAETIPL DSIYSRSAISLLGQISDPVFGDFEASYINRLQCAPGFTFSRKPVNDRIDSVNIILSYYSG VGDTTTWGKAQVYEITKPLPKSRYSVDDLTPYTQGAKLLGELTYRPSDTTRVKGLTIRVP NELGERFLKASREHPEWFASQEAFESNLLRGLYVTTTTGTGHVISVYSTALRIFYTYETK QKSSKGVDSTVYKPTWEIFTNNKSLYALNSLKHSYLEKLLKKPSPDGKTYIKSPAGVVTK LSCSKEELSRLLHEYEKMSKDKKDFGWVINEGKLQIAVDVPNVDTHFNPPPQLLLIPKDS VAHFFARSINDPLVASTAFVSGRYSVLERNYTFSNISHLIEAHMRGNMVTDADGTHRVTK DLELLLIPVATELASTPSSAGQTVAITNLLYPSAVQLKWGAKEFKLGVIGTGFYNRR >gi|228306983|gb|ACLR01000214.1| GENE 63 77774 - 79048 1724 424 aa, chain + ## HITS:1 COG:STM3113 KEGG:ns NR:ns ## COG: STM3113 COG0477 # Protein_GI_number: 16766414 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 8 424 3 413 418 363 47.0 1e-100 MTKEKEQIKLKLIVMNFLQFFIWGAWLISMGRYMGNVMQYDGQEVGGLFATAGFAAIITP ALTGIIADRWIGAERLLSICHLLTGACLIAVGFLPVGTPFATTWLVIFGVNLFFMPTLSL SNTVAYHALGTVQADIVKDFPPIRVWGTIGFIVAMWLVNLFKWMDSPMQFNLGAFAAIAL AIYAWTLPAVPHGVKKAQEGRRSLLSILGLDALVLFKNRQMAVFFTFCILLGAALQVTNA YGNMYLDHFKGVAEYADSFAVKYPNILLSLSQISETLFILAIPFFLKRFGIKGVMTMSFA ARFLRFGLFGIGDPGMPGIIALVLSMVVYGMAFDFFNISGSMFVDQSVSPSMRASAQGLF LLMTNGLGVVIGSLGAGWVVEHFTIAKVTDWTTVWYIFAGYALVTGVLFLLLFHPKQLSK AQSA >gi|228306983|gb|ACLR01000214.1| GENE 64 79091 - 79846 810 251 aa, chain + ## HITS:1 COG:CC3695 KEGG:ns NR:ns ## COG: CC3695 COG0767 # Protein_GI_number: 16127925 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Caulobacter vibrioides # 32 249 49 265 269 110 31.0 2e-24 MAKPISNALSVMGEYTLLMAQVFRRPKKWGIFFKQLIREIAKYGLDSIWIVVIISFFIGT VITIQLSINMNSPLIPHFTIGYASREIMFLEFSSSIMCLILAGKVGSSIASELATMRVTE QIDAMEIMGVNSANFLILPKILGLMLFIPVLSVISMSTGLVGGYLATYFIPTITPSDFEM GLQTFFVTRNIFYSIIKSLVYAFIISSGASYFGYTVKGGALGVGRASTNAVVSSCVLILL ADVVLTSLLFM >gi|228306983|gb|ACLR01000214.1| GENE 65 79849 - 80592 187 247 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 233 1 230 318 76 26 4e-13 MTESKGTKIIEVRELCKEFDGKEVLNQINATFKPGSISCIIGRSGAGKTVMLKCLIGLIQ PTSGEILFDGHSMTLLSKEQLKQLRQVTGVLFQGSALFDSMTVLENVLFPLQLFSKLSPR ERKAHAMALLDRVGLEGAQRKFPSEISGGMMKRVAIARAVALNPHYLFCDEPNSGLDPTT SASIDKLLKELTEEYQITTVINTHDMNSIKTVADHILYLDKGQVAWQGSREELKGDIPAS LKNFLYL >gi|228306983|gb|ACLR01000214.1| GENE 66 80630 - 81544 1012 304 aa, chain + ## HITS:1 COG:PA5232 KEGG:ns NR:ns ## COG: PA5232 COG0845 # Protein_GI_number: 15600425 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Pseudomonas aeruginosa # 30 286 40 317 357 81 26.0 2e-15 MTHAKRYIGYLFLLTLLLSWGCKDHSSDYSAQGIFEADEIVVSATTSGELLRLDVSEGDQ LEEGQVVGLIDTTFLALQKDLVDTQQATVNAAGHTNAATQVAPLEAQLKALRKERDRYAP LVARGIMAQRTLDEIDAKISAVQGQIAAARATIGQQNRSATGSGNALSVQESQVDQMISR SFIKAPISGTVLTVYLHQGELAGQGMPLFRLANLQQMYLRAYVTAEQLQKVTLGQQVSVY SDMGEEEPQAYTGEVVWISDRAEFTPKNIQTPDARASLIYAIKVRVPNDGKLRIGQYGRV ALDH >gi|228306983|gb|ACLR01000214.1| GENE 67 81549 - 82484 1127 311 aa, chain + ## HITS:1 COG:CAC3269 KEGG:ns NR:ns ## COG: CAC3269 COG1131 # Protein_GI_number: 15896514 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Clostridium acetobutylicum # 10 229 3 223 259 203 45.0 4e-52 MSVEEATQPAVSCQGVCKSFGKTVALQGIDLSVREGELLGLIGPDGAGKTTLIRIIATLL NPDAGAVTVLGHDVKRDYRPLRHQIGYMPGRFSLYQDLTVRENLEFFATVYKTTVEENYH LIEDIYKMLLPFEKRPAGKLSGGMKQKLALSCALIHKPRLLLLDEPTTGVDPVSRREFWQ MLSKLREQGEITMIVSTPYMDEAVLCDQVALMKDGQILSIDTPDGLVSQMDRALWSATAE DMGDLLLKLRSLQGVLSSFAFGEAHHFTFDEQVITPEEIHMRLLEQGVRGLDIRKIPPSI EDYFLIISQES >gi|228306983|gb|ACLR01000214.1| GENE 68 82488 - 83234 346 248 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225088774|ref|YP_002660041.1| ribosomal protein S16 [gamma proteobacterium NOR5-3] # 20 240 25 251 312 137 36 2e-31 MPSTEYSILANKLTKRFGDFTAVDEITFDVLPGEIFGFLGANGAGKSTAIRMLTGLLKPS SGYAEVAGYDVRKETELIKRNIGYMSQKFSLYDYLSVEENIFLYGRIYGLSRRIIQSRME RLLEELNFYDQRKLRVGSLPLGWKQKLAFSVAIFHRPKIVFLDEPTGGVDPVARRRFWEL IYNAAAEGITVFVTTHYMDESEYCDRISIMVDGQIKALDTPRALKRQFDCDSMDEVFYQL ARGAKRSE >gi|228306983|gb|ACLR01000214.1| GENE 69 83380 - 83811 758 143 aa, chain + ## HITS:1 COG:TM0374 KEGG:ns NR:ns ## COG: TM0374 COG0071 # Protein_GI_number: 15643142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Thermotoga maritima # 1 134 1 139 147 62 34.0 2e-10 MTLSRRDNNWRPALWSDLFDSNWMVRPNATAPAINVLETPEEFRVEIAAPGMKREDFNIE INEEHDLVITMERHNEEEQHDNEQSRYLRREFSYSKFEQTLILPDNVDEERIQARMADGV LTLSIPKISEEDQQKARRTIAIE >gi|228306983|gb|ACLR01000214.1| GENE 70 83989 - 84189 67 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVPRAEFWSSQGAIPYPPRRNEKILRNFEIFLPKFHFILPNFYFKLRRNLGFPRELLENC YRRIGF >gi|228306983|gb|ACLR01000214.1| GENE 71 84484 - 85263 945 259 aa, chain + ## HITS:1 COG:lin2923 KEGG:ns NR:ns ## COG: lin2923 COG1192 # Protein_GI_number: 16801982 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 1 250 1 250 253 276 55.0 2e-74 MGRIISLANQKGGVGKTTTTINLAASLAVLEKKVLVVDADPQANASSGLGVNSTTLSETI YECLIGGLPLDKVVRPTHVDNLFILPSHIDLVGAEIEMLQLKERETVMREMLRPVVDQYD YILIDCSPSLGIITVNALVASHAVIIPVQCEYFALEGISKLLNTIRIIKSRLNPALEIEG FLLTMYDSRLRLANQVYEEVKEHFGQLVFDTVIQRNVKLSEAPSHGLPALLYDADSKGAI NHLQLAEELIRRTAQRAAL >gi|228306983|gb|ACLR01000214.1| GENE 72 85288 - 86184 1004 298 aa, chain + ## HITS:1 COG:CAC3729 KEGG:ns NR:ns ## COG: CAC3729 COG1475 # Protein_GI_number: 15896960 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 11 293 7 282 283 182 41.0 5e-46 MTNKKKENKVIGRGLDALLGDVSNSSSISEIAIDKIEPNPDQPRTHFDPESLEELAASIR ALGIVQPITVRELTDGRHLIISGERRWRASKLANLTSIPAYIVKANDEQVVEMALIENIQ REDLNAIEIALTYKRLLEHSEGTQEELAKKVGKTRSSISNYLRLLRLPAEVQLGLTEKKI DMGHARAILSLTDPAQQLKLYQTTLTEHLSVRQVEALANEMREPTEETPKASKKRQTLSK LASSGNDYAPLAKQLSSFFGTKVSLRCKESGKGTITIPFSSEEQLIEICSILEGGANH >gi|228306983|gb|ACLR01000214.1| GENE 73 86201 - 87028 748 275 aa, chain + ## HITS:1 COG:no KEGG:PGN_0253 NR:ns ## KEGG: PGN_0253 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 113 248 74 209 235 150 50.0 4e-35 MSRTALTRSLLILVMSCAIACYSGMALHATTPIVPQDTTALVTDTLGTSTADTLGTKEPS KLVATPQKATSDLTAKGKTESKALQSTTATKGDKRPEGVPFFKKMTRWFTRYPNSNVALL CSIIPGGGQLYNQRYWKIPIALSAMTAGLYAVTWNQRLYNEYHTAYADLLSENPLDHTSW QAFIPSGADPSQYVSDGNLRSRLERGSKQYKESRDLSIVLTVALYLLSALDAYVDAELYY FNVSPQLTVDMGEGLRDKPAGPRPQSVMVGASVRF >gi|228306983|gb|ACLR01000214.1| GENE 74 87042 - 88415 1320 457 aa, chain + ## HITS:1 COG:YPO1078 KEGG:ns NR:ns ## COG: YPO1078 COG0741 # Protein_GI_number: 16121379 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Yersinia pestis # 116 456 91 411 475 156 33.0 1e-37 MKIPFLRHTGVRITTYIMLFCCLPALLVATPLYTAQDSVDTEGAVELDAVTARKELQEYL PKSLDTDLGLLMETWRTGYATQKRFEVPCGSYKAENIRSLSDSVLISRLQALPTVIPIPY NAMVKEGIATYITDRPRLIRVILALGDYYFPIMEEIFDRNGLPVELIYLTVVESALNPFA VSPAGASGLWQLMLPTGRSLGLTVNSLIDERFDVYKSSEAAALYLKQLYGLFDNWLLAIA AYNCGPGNVTKAIRRSGGKTTFWDVYPYLPRETRNYIPLFIGAYYACYYHNEHNICPQAQ SMPLATDTLAVQIPLTFAQISQSTGIPTEQIRTLNPQYKRGVIPAAGPVPYTIRLPLKSI SRLDEALITLRRDHKEALSKQIAEAQEEVKQEIKQAPAPTQKSKASRGGHKTYKVRRGDT ISKIAKRHGVSASAIKRANGLKGRNPRLRPGQRLRIP >gi|228306983|gb|ACLR01000214.1| GENE 75 88454 - 88927 665 157 aa, chain + ## HITS:1 COG:no KEGG:Apre_1097 NR:ns ## KEGG: Apre_1097 # Name: not_defined # Def: thioesterase superfamily protein # Organism: A.prevotii # Pathway: not_defined # 3 139 7 144 159 148 50.0 6e-35 MSAIQDLYAPEYSHCWGCGAAHPYGLHLKSYLSEDHAYCYCHHTPNAVYTGGVPDNLYGG FIAMLFDCHGTAAAAALYLVAHAEELTADNLQRFITAHLEVDYLAPTPMGIELEIRAYPV EVTDRKVIMSLELHCGERITARGKMVAVKHRRPAPTA >gi|228306983|gb|ACLR01000214.1| GENE 76 89124 - 90062 1022 312 aa, chain + ## HITS:1 COG:lin1422 KEGG:ns NR:ns ## COG: lin1422 COG1284 # Protein_GI_number: 16800490 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 19 306 20 294 308 125 30.0 1e-28 MPSTTLHLKRQPAPSPHERQTFTPRRSPLAVEILYLIIGAVCQAAAYACFIAPANIVPGG CYGLSITINHLTQGTFEAFPQGLPIGAVALCFNIPFFLLAARSLGLRSGGKTIATFLLIS ICTDLITSMTRDVIIVSNDKFLSSVYGGAILGLGVLLTFKAGSTSAGTDVIARVLSKGNN LKTSHMIIAVDSAIVLFGLVAFNDVSVPLYSWITIFVYGKVVDFLQPENPNKAIFIVSEH TAELRTLIIEQLNLRGTFLHGSGIYAGAERDIIFMIVERKHVNKLKKAVLLADPKAFIAT TNATNDTAPQIL >gi|228306983|gb|ACLR01000214.1| GENE 77 90066 - 90743 654 225 aa, chain + ## HITS:1 COG:lin2475 KEGG:ns NR:ns ## COG: lin2475 COG0652 # Protein_GI_number: 16801537 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Listeria innocua # 21 223 5 193 194 102 32.0 5e-22 MKPFATLLLLCALCVTSLTAQTTAEALPAGRRVLVETSQGDFTLLLYDDTPLHQAAFLEH VRRGDYEGVLMHRVIAQFMIQGGNLSTRGATRETDVSIDTLSTTIPAEILPHHIHKRGAL AAARLPDEENPKKDSSGSQFYIVTGTYYTDFDLDDIAAQRGWDYTPEQRQAYKTQGGAPW LDRQYTVFGEVTDGMRTITKIEDLPTDSTNRPKRDVIIKRMTLLP >gi|228306983|gb|ACLR01000214.1| GENE 78 90757 - 92142 1364 461 aa, chain + ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 79 299 66 280 280 161 41.0 3e-39 MQTPVPSELKAKLAQAYPEHASRIVEALETPPSVSLRLNPARTLSAHPFAELEDGTIPWL PTELEGYWLSERPTFALDPLWHAGAYYVQDASAMTLATIWEQLGWHETPKLALDLCAAPG GKSTLLRDLLPAETLLVSNEILPKRCKILVENMVKWCGADQMIITQEEPQRLTPWLQGFC DLILVDAPCSGEGLMRRDEEARRMWSPQLVADCVTRQRSILQEAMRMLAPEGVLLYATCT LNQEENDQMVQWLLDNYPCELIDLSHCAERIAGACATSYGLHLWPGIVRGEGQYLAALRL TDIVETPSETHKAKGLTRTSRQTFDSLSWLSKATSADYYTIGERIYQLTPEATQHLAEAY KHRLAIATPGLEIASMRHQAKGYEPSFALLHHPLYATAGLPALELPLQEALRYLRGEALT TETPTERGVTVITYRGIPLGLAHSTGARLNNLYPKPYRLRI >gi|228306983|gb|ACLR01000214.1| GENE 79 92168 - 93139 1303 323 aa, chain + ## HITS:1 COG:lin0070 KEGG:ns NR:ns ## COG: lin0070 COG1052 # Protein_GI_number: 16799148 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Listeria innocua # 19 322 17 317 318 209 38.0 5e-54 MDKKKKVLISFDTVRPGFEELVEWADMTRRPEGESFTREEMMEIGAQYDALATQFTFPVD RELIDAFPNIKLIANYGVGYNNIDVAYAHSKGITVTNTPRAVIQPTAELTMGLLLSCSRK IAMWDRHMRRTKSSSKSLSDSSGMATNLCGKTIGIIGYGNIGRAVGHMAQAFGMTVLYNK RHQLDAATEQELGVTYADLDKIFTECDVVSLHTPYNEDSHHLVSASRLAQMKRSAILINA ARGAVVDEAALVHALQTGEIAAAGLDVFEHSDNPLPELYEMEQVTMTPHVGTQTYEARVA MAQELCNCIIGYFEGDRPISIVK >gi|228306983|gb|ACLR01000214.1| GENE 80 93149 - 93382 479 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471242|ref|ZP_04056055.1| ## NR: gi|228471242|ref|ZP_04056055.1| conserved domain protein [Porphyromonas uenonis 60-3] # 1 77 1 77 77 93 100.0 3e-18 MTDASKSLAEEPQQTYQEAITRIQEIVRLLEAGDIEVDELTKLIEEATGLIQFCSTRLTA IDKEVSQLLQQLDESQE >gi|228306983|gb|ACLR01000214.1| GENE 81 93491 - 95605 3380 704 aa, chain + ## HITS:1 COG:XF1944 KEGG:ns NR:ns ## COG: XF1944 COG0339 # Protein_GI_number: 15838538 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Xylella fastidiosa 9a5c # 7 704 1 716 716 646 47.0 0 MRKQAIMLLAIATMLLACNKQKQADLADNPFVHPSETYMNAPDFTKIKAEHFAPAFDEGM RQHNEEIAAIVDNAEAPTFTNTIEALERAGQVLQRTSAVFFALTSADTNDELRAIEAEYV PKLTAHSDEIMLNDKLFARIKTVYETGLEGLQPDQVRLTKQYYDNYVKAGANLSAEDKEK LKKLNGEEAELTAKFGNMLTDATNVPVFFTDKSQLDGLSESELQEAADLAKEEGKKGQWA IRLVNTTQQPVMAKLNNRDSRKAILEASINRCNNGDKYDTQSIIKRLATLRAEKAQLLGF KTFADWTLQDALAKNGETARNFLERLAKLYQPKAAEDAKMLEEFARKSEGPDFKLEAYDW AYYAEKMRKEQYDIDETQLSEYFVLDSVLHNGVFYAANKLYGLTFEQRTDVSVYHPDVTV YDVKNDKGEVIALFYFDPYARPSKSGGAWMSNFVEQSTLLGNKPVIYNVCNNKKPAAGQP CLMTWDEVTTLFHEFGHALHGMLSTQTYPSISGTNVSRDFVEFPSQFNEHWASEPTVFAN YAKHYKTGEAMPTELRDKMIAAGNFNQAYSIGENIASSLIDQCWHALAVGDKVDDVQAFE QEALTKYGMLNAQIPPRYRSPYFRHIWSNGYSAGYYSYLWSEAVDNEVYAWIEAHGGMTR ENGQRLADILLSRGNSEDLMVLFEQFTGHKEVDIEPLLRFRGLR >gi|228306983|gb|ACLR01000214.1| GENE 82 95679 - 95933 246 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469617|ref|ZP_04054597.1| ## NR: gi|228469617|ref|ZP_04054597.1| hypothetical protein PORUE0001_1553 [Porphyromonas uenonis 60-3] # 22 80 16 74 91 67 66.0 2e-10 MSRGRLFFCATFSGLSLRHPTPRQKNPNSPLEKKNSSRRAEIKVRKNEMKLRKKEIKVPK NFFVLRWRISVFYRGIFHFLNTTP >gi|228306983|gb|ACLR01000214.1| GENE 83 96084 - 96839 971 251 aa, chain + ## HITS:1 COG:MT2111_2 KEGG:ns NR:ns ## COG: MT2111_2 COG0463 # Protein_GI_number: 15841539 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mycobacterium tuberculosis CDC1551 # 5 233 16 241 277 198 45.0 9e-51 MHASLIIIPTYNESENVAEMIRAVLALPEAFDLLILDDNSPDGTAEIVRTLQQETDYTDR LHLIVRPGKMGLGTAYLTGFEWALEHGYNYIFEMDCDFSHPLSALPHLLRAVSEEGYDVA VGSRYVRGGGVKDWPLNRILMSYLASVYVRLVTWLPVRDTTAGFVCYRREVLEAMRLDEV HFKGYAFQIEMKYTAHCLGFKIKEVPITFVNRKLGSSKMNGSIFGEAFTGVLKLRYWRLF KGFPKRRNPEK >gi|228306983|gb|ACLR01000214.1| GENE 84 96841 - 98196 1131 451 aa, chain + ## HITS:1 COG:XF0988 KEGG:ns NR:ns ## COG: XF0988 COG0044 # Protein_GI_number: 15837590 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Xylella fastidiosa 9a5c # 4 450 5 447 449 426 50.0 1e-119 MKQIILGATLINEGRQVVGSVCLSDERIESIYIGVDQASELPDELLQGAEIVDAHGLWLL PGCIDDQVHFREPGLTHKGDIAHESRAAVAGGVTSYMDMPNVKPPTVTLEALLDKRQRAQ ETSWANYAFYFGGTNDNAPEACAIDPALIPGYKLFLGASTGNMLVDSEEALDYFFAHAPK LIATHCESEEIITRNKELYRQRYDGHPPIEAHPLIRSREACYASSHSAIERAKRLGARLH VLHLSTAEEMELFSAAPLSPEKRITAEVCVHHLWFTDEDYSRLGNRIKWNPAVKTARDRE ALRQALVEGRIDVIATDHAPHTLADKEGDALTAASGGPLVQHSLLMMLELAHEGLWSPEL VVEKMAHAPAQLFGVRERGYIRTGYYADLVLVDPHQETTVTKESLYSKCGWSPLEGYTFS HRIVATWVNGQIAYRDGQLTSRPPVHALTFA >gi|228306983|gb|ACLR01000214.1| GENE 85 98372 - 98788 674 138 aa, chain + ## HITS:1 COG:PH0272 KEGG:ns NR:ns ## COG: PH0272 COG0346 # Protein_GI_number: 14590197 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Pyrococcus horikoshii # 6 135 8 136 136 146 60.0 8e-36 MNLSHIEHLGIAVKSIEEALPFFEGVLGLTCYNIEEVADQKVRTAFLKIGEVKLELLEPT SDESPIAKFIEKRGEGIHHLALSSDDVAPALEELKGKGIRLIDEKPRKGAEGLNIAFVHP KSAHGILLEICDCKDVAK >gi|228306983|gb|ACLR01000214.1| GENE 86 98822 - 100375 2331 517 aa, chain + ## HITS:1 COG:RC0960 KEGG:ns NR:ns ## COG: RC0960 COG4799 # Protein_GI_number: 15892883 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Rickettsia conorii # 14 517 15 514 514 669 64.0 0 MSVQQEKIKQLLAKREEARLGGGEERIEKQHAKGKYTARERIAMLLDEGSFEEIDMFVQH RCTNFGMEKKKFLGDGVVVGSGTIDGRLVYVFAQDFTVIGGALGEMLAAKICKVMDLAMT MGAPCIGLNDSGGARIQEAVNALCGYGEIFERNILASGVIPQISGIFGPCAGGAVYSPAL TDFNIMVRNSSYMFLTGPKVVKTVTGEDVTQEELGGADVHASKSGVAHFAVDNDEAGLQL IRQLLSFLPQNNMEEPPFVACDDPADRCEELLNEIIPDSPNRAYDMYEVIGAIVDHGEFL EVHRDYARNIIVGFARFNGQSVGIVANQPKVMAGSLDCNSSRKAARFVRFCDSFNIPIVT LVDVPGFLPGTGQEYNAVITHGAKLLYAYGEATVPKITVVLRKAYGGAYIVMGSKHLRAD INYAWPSAEIAVMGPSGAVEVVFAKEVKASDDPAKTALEKEQEYRDAFANPYNAASYGYI DDVIEPRNTRFRIIRALQQLRTKRQTLPAKKHDNVPL >gi|228306983|gb|ACLR01000214.1| GENE 87 100388 - 100621 397 77 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471236|ref|ZP_04056049.1| ## NR: gi|228471236|ref|ZP_04056049.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 77 1 77 77 82 100.0 6e-15 MATKKIEKGKKAPAKRAKKAAPAPSPEEVAIALALAQALGTPHDEESYQLTIRHKEFDPW SHKLQNMRVTPQKQYYI >gi|228306983|gb|ACLR01000214.1| GENE 88 100687 - 101124 560 145 aa, chain + ## HITS:1 COG:CC2179 KEGG:ns NR:ns ## COG: CC2179 COG4770 # Protein_GI_number: 16126418 # Func_class: I Lipid transport and metabolism # Function: Acetyl/propionyl-CoA carboxylase, alpha subunit # Organism: Caulobacter vibrioides # 54 135 582 659 669 64 43.0 7e-11 MKEYKYKIDGKEYAVKIDKIEGDQAQLEVNGTPYSVEIIQEKKKETPKVTKPAPTSAPAA TAAPAPAAVPASTGKGKAVKAPLPGVIISVDVQVGQQVKRGQQVAVLEAMKMENGINAEC DGTITEIKVKAGDSILEGTDILIIG >gi|228306983|gb|ACLR01000214.1| GENE 89 101327 - 102394 1391 355 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471228|ref|ZP_04056041.1| ## NR: gi|228471228|ref|ZP_04056041.1| hypothetical protein PORUE0001_1418 [Porphyromonas uenonis 60-3] # 1 355 44 398 398 692 100.0 0 MTNLQRILAALTAIVCVTLAMNSCKPKSEPTTTTEVLQVKDFPYLKKESKMSTYSFGEIE AYEKQLGLRKLTKKTDTSLIYEAINPKKVNLTYVCYKIIPRDESKSGAFARADRFTMDMC EQPELRSYFELNGFTYEGSDQNASEKFVNKDLAVRLTLSSTTPGVGLTFTDAPDLYHKKT TPGDPNFQALYLPLLDVFGQKISQDSPIIDREQKTHPDCEIEFVKANVDKGYKHDAIVVN MPFITKLKPADRSKPRVRSYSYESKSGSTIELISYLFTQEWMKANIPGTDPLIKDFMTKN GFTYQGMEKVSIYDIEADLYQYYNDQLKVYFEYSLVGGAFPTAMGVYTKTPTVEF Prediction of potential genes in microbial genomes Time: Fri May 27 10:21:56 2011 Seq name: gi|228306976|gb|ACLR01000215.1| Porphyromonas uenonis 60-3 deg1118640599719, whole genome shotgun sequence Length of sequence - 959 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 366 391 ## COG1748 Saccharopine dehydrogenase and related proteins 2 2 Tu 1 . - CDS 520 - 957 519 ## COG0296 1,4-alpha-glucan branching enzyme Predicted protein(s) >gi|228306976|gb|ACLR01000215.1| GENE 1 1 - 366 391 121 aa, chain + ## HITS:1 COG:slr0049 KEGG:ns NR:ns ## COG: slr0049 COG1748 # Protein_GI_number: 16331467 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Synechocystis # 11 111 288 388 398 150 61.0 4e-37 RADPIPQGLSLPNPQELGENYTGETSIGCRIRGVKDGKERTYYIWNNCSHQAAYRETGTQ GVSYTTGVPATTGALMLAKGIWGGAGVFNVEQFDPDPFLEEVARQGLPWHESFDIDIEFE K >gi|228306976|gb|ACLR01000215.1| GENE 2 520 - 957 519 145 aa, chain - ## HITS:1 COG:YEL011w KEGG:ns NR:ns ## COG: YEL011w COG0296 # Protein_GI_number: 6320826 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Saccharomyces cerevisiae # 3 144 561 703 704 84 38.0 6e-17 EGNGYSYQYARRQWSLQANGLLRYKQLAHFDKGMLSLCRLTPRFAELSDYCYHSHTERQV IAFMRGDGYLFAFNFSPTESYTDYLIEGVPAGQYELLLDSDAVACGGFGRIDASVLHHTR ATAEGGTELRLYLPSRSAQVYQRKR Prediction of potential genes in microbial genomes Time: Fri May 27 10:21:56 2011 Seq name: gi|228306974|gb|ACLR01000216.1| Porphyromonas uenonis 60-3 deg1118640599751, whole genome shotgun sequence Length of sequence - 622 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 245 135 ## Predicted protein(s) >gi|228306974|gb|ACLR01000216.1| GENE 1 3 - 245 135 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no KSGLILAPSKEIAISSVKPFESPARKRKIHRNFEIFLPKFHFILPNFYFPVPWRNFVSSL EISYFLPRGGTRGEKLEIRN Prediction of potential genes in microbial genomes Time: Fri May 27 10:22:02 2011 Seq name: gi|228306971|gb|ACLR01000217.1| Porphyromonas uenonis 60-3 deg1118640599761, whole genome shotgun sequence Length of sequence - 661 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 4 - 303 360 ## PG1479 conjugative transposon protein TraJ + Term 437 - 472 2.0 Predicted protein(s) >gi|228306971|gb|ACLR01000217.1| GENE 1 4 - 303 360 99 aa, chain + ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 1 92 247 338 368 129 64.0 2e-29 MVQKDIAALSDPNYLPDSGSWYYIVFFLIGIVGYFCVPTVAGWIIEAGGGIGAYGRNVNQ TAQRGAQGAYTGGKAVAGATGSMAGNVGGRIKGALIKGK Prediction of potential genes in microbial genomes Time: Fri May 27 10:22:05 2011 Seq name: gi|228306968|gb|ACLR01000218.1| Porphyromonas uenonis 60-3 deg1118640599566, whole genome shotgun sequence Length of sequence - 965 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 215 207 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 459 - 518 3.6 - Term 483 - 531 14.2 2 2 Tu 1 . - CDS 561 - 965 433 ## COG2217 Cation transport ATPase Predicted protein(s) >gi|228306968|gb|ACLR01000218.1| GENE 1 2 - 215 207 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 71 1 71 84 140 98.0 3e-32 MKYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFCCETT >gi|228306968|gb|ACLR01000218.1| GENE 2 561 - 965 433 134 aa, chain - ## HITS:1 COG:FN0258 KEGG:ns NR:ns ## COG: FN0258 COG2217 # Protein_GI_number: 19703603 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Fusobacterium nucleatum # 1 125 485 610 614 154 64.0 6e-38 ELSRLEAILQQPARGTVLFVGDGINDAPVLARADVGIAMGGLGSDAAIEAADVVIMDDNP LKIATAIRIARHTVGIALQNAWFAIGIKVLVLLLALLGVASMWMAVFADVGVTVLAVLNA MRALRPVKVSRSSN Prediction of potential genes in microbial genomes Time: Fri May 27 10:22:10 2011 Seq name: gi|228306966|gb|ACLR01000219.1| Porphyromonas uenonis 60-3 deg1118640599610, whole genome shotgun sequence Length of sequence - 947 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 312 - 353 9.6 1 1 Tu 1 . - CDS 570 - 923 531 ## GFO_0855 IS116/IS110/IS902 family transposase Predicted protein(s) >gi|228306966|gb|ACLR01000219.1| GENE 1 570 - 923 531 117 aa, chain - ## HITS:1 COG:no KEGG:GFO_0855 NR:ns ## KEGG: GFO_0855 # Name: not_defined # Def: IS116/IS110/IS902 family transposase # Organism: G.forsetii # Pathway: not_defined # 2 99 216 314 328 77 40.0 1e-13 MLIVFTDNFKGWSAKKMASYCGIAPFYESSGSSVFHKSNTGGYSNRRLKGILTQAARSAI THNPTFKQYYQRMKAQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRALRA Prediction of potential genes in microbial genomes Time: Fri May 27 10:22:16 2011 Seq name: gi|228306954|gb|ACLR01000220.1| Porphyromonas uenonis 60-3 ctg1118640599624, whole genome shotgun sequence Length of sequence - 16472 bp Number of predicted genes - 11, with homology - 9 Number of transcription units - 7, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 308 - 384 93.0 # AE015924 [D:124845..124952] # 5S ribosomal RNA # Porphyromonas gingivalis W83 # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas. + Prom 1525 - 1584 4.2 1 1 Tu 1 . + CDS 1627 - 4029 2269 ## BVU_0834 hypothetical protein + Term 4088 - 4132 10.5 - Term 4074 - 4122 8.4 2 2 Tu 1 . - CDS 4146 - 5804 1571 ## COG4886 Leucine-rich repeat (LRR) protein - Prom 5987 - 6046 1.9 3 3 Tu 1 . + CDS 5952 - 6167 87 ## + Prom 6260 - 6319 4.5 4 4 Op 1 . + CDS 6408 - 7646 1635 ## COG1004 Predicted UDP-glucose 6-dehydrogenase + Prom 7651 - 7710 2.8 5 4 Op 2 11/0.000 + CDS 7731 - 9830 2746 ## COG0855 Polyphosphate kinase 6 4 Op 3 . + CDS 9827 - 10729 887 ## COG0248 Exopolyphosphatase 7 4 Op 4 . + CDS 10798 - 11961 1208 ## COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family 8 4 Op 5 . + CDS 12099 - 13409 1730 ## COG0427 Acetyl-CoA hydrolase + Term 13427 - 13499 12.1 9 5 Tu 1 . + CDS 13518 - 14183 432 ## COG0692 Uracil DNA glycosylase + Term 14211 - 14249 9.3 - Term 14259 - 14311 2.2 10 6 Tu 1 . - CDS 14330 - 15667 1833 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 15698 - 15757 2.7 11 7 Tu 1 . + CDS 15695 - 15973 200 ## + Term 16177 - 16216 1.6 Predicted protein(s) >gi|228306954|gb|ACLR01000220.1| GENE 1 1627 - 4029 2269 800 aa, chain + ## HITS:1 COG:no KEGG:BVU_0834 NR:ns ## KEGG: BVU_0834 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 46 798 18 764 765 283 28.0 3e-74 MLTQSLSGETHQKSLSGQTVKGQVQQSLQSQNAQSQSQSAQPQTQGTQQGEIYRGQLRDR VTQEPISMATVILLSADSTVVSTTLSSDGGTFELSGEGAHWLQVNHLAYQTLRVSLDAPL PDVLYMDQATGELGEVVVKAERPLMKLVDGTTPSYDIDQLFAHSSVTTAYEMLGQLPGMS MQGDVPTLVGTNGYTLVFNGQPSNVPQEMLLERLKSIPREMVSSVEISYTPIARYRAKGA SINVVFKGQAAGSPLSGTSGQLFTEYSNRYYSNYAAGGSVNYSASNGFSVTANYRASLGK IRSDLIYDIAPFGRYTKGLAIENSGYTNYNKHTLFAELGYKFGRHALSVDYYGSLTPPEG TTRYQVNQKEREPLESLNKGNDNTHHVAINYRLGGNLLAGLFYTHYRDHREVLYGMEHSP RSPYATSYTSDQLSQVWGGHIDNSHSWDGGWGLSYGTKVSYSKTINGQTYLWRNGQQVPS DAVSGTSKELLADLYIGGKKQFKNGLSLGLTLIGDYANYIGAYETFQIIPQASLSYARNP NHVLQVNIQSVKRDPSYWEREPFSRADDRYQLWEGNPQIRPYVTYFGQVNYIFKQRYVFF LSGYYQPHRFEQQMYLDPDRSRLVYKTWNWHYASNASIGAVVPLPQTKWWNARLTLNGQL NSVKLDIPYEPTYQCTKPQYYVALSNEFRLSQKHNITIGLDGSYLHGAIQGYYSLGDIYN LACRAKWTSQDKKWSLTLRGDDLLNAGVLRVRVNYGIHQVGFRPSRYNTRFSLHLSYTFG SFDKVQTKEPTQLSTDRFGI >gi|228306954|gb|ACLR01000220.1| GENE 2 4146 - 5804 1571 552 aa, chain - ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 93 258 122 286 292 109 39.0 1e-23 MKQSNQQIFLHALGVSFFLVMLWSSLTLSAQQTNYSVTFTTAKQVGEQIEFGYIAKSVNQ LTIDGIKEQPSKLNSGSVKYTLTKQEITIRGELSYLFVSDAMLTKLDVTQMPSLENLNCS KNQLTTLDLSRCVKLKSILCFSNDITQIKGLSSATQLQRLLCNENALSTLDLPRSTALST LDCAQNYLSALDLSKAPNLKTLTCSKNQIATLDLSQTPNLVALSCGDNMLKGLDLSGVKS LSYLECPRNQIKGISMTHLMSTLPTPTQEGRLILVSSRKANQDNEATKADVANARSRNWK VLNDNQEEYEGIAETFAVTLVTGDGGTAKIEGAKDLAKVTEGTQLTVIATPQTGFELDKI MAGSEDITTSKQFVVKQATKVQVSFKKKPITPEPKKTFAVTLVTGDGGTAKIEGTKDLAK VTEGTQLTVIATPQTGFELDKIMAGSEDITTSKQFVVKQATKVQVSFKKSTAITDVASAQ LQIYPNPTTQELHIAGVAPHLPLTLYNVAGEASAVARSDSQGVAEMDLSHLPAGIYLLQI SGELHRIVLQNR >gi|228306954|gb|ACLR01000220.1| GENE 3 5952 - 6167 87 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSHSQMQKYKKLRILYDAGLTHYNCSVRSYTLATSETWMNSLYSIAVRLLDFDQSTVFF VGNSSFTPRKL >gi|228306954|gb|ACLR01000220.1| GENE 4 6408 - 7646 1635 412 aa, chain + ## HITS:1 COG:STM2080 KEGG:ns NR:ns ## COG: STM2080 COG1004 # Protein_GI_number: 16765410 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Salmonella typhimurium LT2 # 1 412 1 388 388 495 59.0 1e-140 MKIAVAGMGYVGLSVAVLLAQHHEVVGVDVLPERVDLINQRQSPIQDDYLEEYLATRQLR LRATLDAEEAYRGADFVVVATPTNYDPVQNFFNTSAVEAVVSAVRACNPVATIVVKSTVP VGYTAHLRELMGYEDILFAPEFLRESKALYDNLYPSRIIVGYDKQSSHQQERAERFAELI REGAIRQDMPVLLMGTTEAEAVKLFANTYLALRVSYFNELDTYAELKELDSKSIIEGVCL DPRIGDHYNNPSFGYGGYCLPKDTKQLLANYDAVPQNIIGAIVASNRTRKDFIADQVLKM AGYYSYMEENQYDPTQERECVIGIYRLTMKSHSDNFRHSSIQGVMKRIKAKGAKVIIYEP TLAQHTTFFGSIVENDLATFKARSQAIITNRYHADLDDVAERVYTRDIFRRD >gi|228306954|gb|ACLR01000220.1| GENE 5 7731 - 9830 2746 699 aa, chain + ## HITS:1 COG:VC0723 KEGG:ns NR:ns ## COG: VC0723 COG0855 # Protein_GI_number: 15640742 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Vibrio cholerae # 14 687 7 678 701 467 39.0 1e-131 MGKTTKRKVTKFPYIDRDISWMSFNRRILLESAREDVPLMERLNFLGIYSNNLDEFFRVR VASLRRIAEDEDLSALQRKKAERTLRKIYKLNKEYAETFEENFQQALDDLTEAGIRVVNE LELTPRQEEQVFDFYIRQLGASTNPLSLRKMDFSADQIEESIYLAVQMKELEQGSGKPLR QSVGIIKAPVEKFGRFIRIADDEEGRVCIMFLDDVIRFNLKYIFAGLRFNSFEAYTFKFT KDAEMDIREEDVDVGVVQRVSKGLRRRRKGEMLRVVYDADMPGSLRNKIFRKAGLDSNDA KVAGGRYHNLRDLMDFPKCGRQDLCNEPQMPILGDGIDFTESMIDQVLHRDRHLHFPYHS FNRFLRLLREAAISDEVRGIKCTLYRVAKDSNVINALIAAAKNGKKVTVVVELLARFDEE SNIAWAKEMIEAGINVLFGPETLKIHSKLVHITTRHGDIACIGTGNMHEGTARVYTDVML MTANKSVAKEVADVFKYIEKPYLDTHFKELLVSPNDMRRRFIALINREIKNKLAGKPAYI MVKVNHIVDPALIKRLYAASQAGVDIDLLVRGNCSLVPGVKGVSENIRVYGIIDRYLEHS RIFIFCNNDDPLYFIGSADWMQRNLDRRIEVVAPVYDKEIQRDLHHIVACGLQDVSQGHY VNSHDGRPRREEAPTPWYRSQTDLYAYYLQQDIDTDTKI >gi|228306954|gb|ACLR01000220.1| GENE 6 9827 - 10729 887 300 aa, chain + ## HITS:1 COG:MA0083 KEGG:ns NR:ns ## COG: MA0083 COG0248 # Protein_GI_number: 20088982 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Methanosarcina acetivorans str.C2A # 6 291 12 310 543 102 27.0 6e-22 MRKLNLAAIDIGSNAVRLLIKCVNSDLSEQPLSKVQLLRVPLRLGEDAFISGQISKRKQR DILSLMKVYKHLMKIYDVAHYRACATSAMREASNAQEIVDKVLRKTGIEIEVISGEEEAA LVAQSKVHRIVTTDRNYLFMDVGGGSTELNLYVAGEPVATRSFDIGTVRMLSGVVRDATF EAFDQYLADLYSQYGAATIVGTGGNINRLARLNGTTDLAKPDTRFISAEALQEIYETLAA LTDEQRMTRFNLKPDRSDVIVPAGELFTRVVAALHADQVIVPTIGVADGIIDQLYLQVTD >gi|228306954|gb|ACLR01000220.1| GENE 7 10798 - 11961 1208 387 aa, chain + ## HITS:1 COG:alr4566 KEGG:ns NR:ns ## COG: alr4566 COG1979 # Protein_GI_number: 17232058 # Func_class: C Energy production and conversion # Function: Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family # Organism: Nostoc sp. PCC 7120 # 2 385 1 383 384 342 47.0 6e-94 MIQPFTYYNPTRIVFGEGRIAQLSRLIEPHYRILLVMGGGSIRRNGVYDAVCQALEGRSV TEFWGIESNPTVETIRKAVQLGRQEQCDFVLAVGGGSVIDASKLIIAAMCSDQDPWDIVR AGKHRGEHLPLGVVLTIPATGSEMNSGGVISCRETQEKYSFSSKHPRFAILDPRVPTSLP PYQVACGLADTFVHVMEQYMTTMRSPLLMDRMAEGVLHTLIEIAPGLTHNHQDVDLMGEF MLCATVGLNGYLSWGVDQDWSTHYIGHEVTALTGLTHGHTLAIILPATLQVMRHLGKQDK LLQYAARIWGFTPQSCQGEEHAITAAIEATKQFFAKLGLSVTLRDAEVSHEVIDEVVRRF TERGTVLGEHQNMTPEIVRQILELAYE >gi|228306954|gb|ACLR01000220.1| GENE 8 12099 - 13409 1730 436 aa, chain + ## HITS:1 COG:FN0621 KEGG:ns NR:ns ## COG: FN0621 COG0427 # Protein_GI_number: 19703956 # Func_class: C Energy production and conversion # Function: Acetyl-CoA hydrolase # Organism: Fusobacterium nucleatum # 5 436 2 433 434 402 48.0 1e-112 MQKNQDWKSYYQSHLTTPLEALKKELTEGCNIVVGHAAAAPDTTLKSMMEHVAELPAGNI FHVLYYGAGYQFTPEIAKNFNLKINFLESNARKACRAGLVDFFPCHFHEVPGLFTDGFYP VDVAIVQLTRPNEEGYCSFSLSCDYTKPATDAARVVIAEVNDQLPFIGGDNLIHVTKLDH IIEVSTAVPEVPPAVPGEIERKIGEICASMIKDGDTLQLGIGAIPDAVLSNLKDRKDLGI HSEMITDGVMKLMREGVITGKRKTRNPNKVVTAFAMGTKELYDFFDHNEDVEMYPVSYTN DPFVVASIDNMVSINSCLEIDLLGQVNAESIGYSMLSGSGGQVDFMRGARRSKGGRSILA FASTAKGGEISRIVPILAEGAAITTGRNDVDYVITEYGVARLRGKTARERAEALIGIAHP KFREMLQEAVVQRWGE >gi|228306954|gb|ACLR01000220.1| GENE 9 13518 - 14183 432 221 aa, chain + ## HITS:1 COG:AGc4459 KEGG:ns NR:ns ## COG: AGc4459 COG0692 # Protein_GI_number: 15889726 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 221 10 228 241 251 55.0 6e-67 MNVRIEPSWHRVLEEEFEKFYFETLTSFVRSEYQTKRIYPPGGQIFRAFDLCPFEDVRVV ILGQDPYHGVGQAEGLAFSVPEGVEVPPSLRNILTEISSDLGHPSQIVGGHLTPWCRQGV LLLNATLTVVAHEAGSHQGRGWETFTDQVISLLSSQREHLVFMLWGNYARCKRALIDRQK HLILEAPHPSPLSAHRGFFGCRHFSKANAYLQRYGYEPIRW >gi|228306954|gb|ACLR01000220.1| GENE 10 14330 - 15667 1833 445 aa, chain - ## HITS:1 COG:STM1299 KEGG:ns NR:ns ## COG: STM1299 COG0334 # Protein_GI_number: 16764650 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Salmonella typhimurium LT2 # 9 444 13 446 447 523 57.0 1e-148 MKTSEIIAQLEAKHPGEPEFIQAVREVLLSIEDIYNQHPEFEKNKIVERLVEPDRIFTFR IPWVDDKGEVQINLGYRVQFNNAIGPYKGGTRFHHTVNLSTLKFLGFEQTFKNALSTLPM GGGKGGSDFSPKGKSEREIMRFCQAYVTELYKYIGPDMDVPAGDVGVGGREVGFMYGMYK KLTRECTGTFTGKGFEFGGSRLRPESTGYGAIYMVNDICKQHNIEFKGKTVAVSGFGNVA WGATMKATELGAKVVCISGPDGYIYDENGINTQEKFDYMCELRNSGNDVVEPYAKKFGAQ FFAGKKPWEHKVDIALPCAIQNELNLEDAKKLVANGVTIVAEVSNMGCTAEAAEFFVEKR IIFAPGKAVNCGGVSCSCLEMSQNAAHIYWSEAEVDERLHQIMKDIHTQCVEYGKEPDGY INYVKGANIAGFMKVAKAMIGQGVC >gi|228306954|gb|ACLR01000220.1| GENE 11 15695 - 15973 200 92 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYHKVTPYFPMKQVFGTPKCKKIHPPAPDILVHLGWKPTRADFLYRQLRGDTKYLPNNSL GDLKSLPRKSEIHRKFEIKLRKNEMKLRKKRK Prediction of potential genes in microbial genomes Time: Fri May 27 10:22:49 2011 Seq name: gi|228306913|gb|ACLR01000221.1| Porphyromonas uenonis 60-3 ctg1118640599683, whole genome shotgun sequence Length of sequence - 61244 bp Number of predicted genes - 38, with homology - 37 Number of transcription units - 17, operones - 8 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 470 757 ## PGN_1476 hypothetical protein + Term 537 - 586 10.5 2 2 Tu 1 . + CDS 953 - 1561 830 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 3 3 Tu 1 . + CDS 1681 - 9234 8877 ## PGN_0832 gliding motility protein SprA + Term 9311 - 9353 7.1 - Term 9239 - 9298 9.5 4 4 Op 1 . - CDS 9300 - 9479 87 ## gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 5 4 Op 2 . - CDS 9502 - 9948 539 ## BT_3989 hypothetical protein - Prom 9979 - 10038 2.6 + Prom 10371 - 10430 7.8 6 5 Op 1 . + CDS 10472 - 11089 534 ## PG1501 TetR family transcriptional regulator 7 5 Op 2 . + CDS 11153 - 13651 2051 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 8 5 Op 3 . + CDS 13701 - 16025 2076 ## GFO_2255 TonB-dependent outer membrane receptor + Prom 16043 - 16102 1.9 9 6 Op 1 . + CDS 16195 - 17250 542 ## COG0270 Site-specific DNA methylase 10 6 Op 2 . + CDS 17247 - 18932 200 ## DaAHT2_2185 ATP-binding region ATPase domain protein + Prom 18960 - 19019 2.9 11 7 Op 1 14/0.000 + CDS 19198 - 19872 800 ## COG0688 Phosphatidylserine decarboxylase 12 7 Op 2 . + CDS 19912 - 20673 733 ## COG1183 Phosphatidylserine synthase 13 7 Op 3 . + CDS 20696 - 20977 299 ## gi|228471287|ref|ZP_04056093.1| hypothetical protein PORUE0001_0928 + Term 21000 - 21052 9.4 - Term 20992 - 21036 5.4 14 8 Op 1 . - CDS 21069 - 22223 1076 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake 15 8 Op 2 . - CDS 22241 - 25942 4582 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 16 8 Op 3 . - CDS 26018 - 26740 703 ## COG2045 Phosphosulfolactate phosphohydrolase and related enzymes 17 8 Op 4 . - CDS 26757 - 28610 1575 ## COG1479 Uncharacterized conserved protein - Term 28987 - 29036 3.3 18 9 Tu 1 . - CDS 29077 - 30168 1685 ## COG0404 Glycine cleavage system T protein (aminomethyltransferase) + Prom 30127 - 30186 3.0 19 10 Tu 1 . + CDS 30436 - 32856 1809 ## Dfer_5310 hypothetical protein + Term 32897 - 32933 -0.4 + TRNA 32979 - 33055 65.9 # Ala GGC 0 0 + Prom 33560 - 33619 3.4 20 11 Tu 1 . + CDS 33758 - 33985 87 ## + Term 34062 - 34103 2.3 21 12 Op 1 . + CDS 34629 - 35645 1086 ## COG0136 Aspartate-semialdehyde dehydrogenase 22 12 Op 2 . + CDS 35669 - 36217 644 ## gi|228471273|ref|ZP_04056079.1| hypothetical protein PORUE0001_0939 23 12 Op 3 . + CDS 36256 - 36876 496 ## PGN_1596 probable 3'-5' exonuclease 24 12 Op 4 . + CDS 36914 - 38134 501 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative 25 12 Op 5 . + CDS 38138 - 39148 591 ## Gura_0781 Sel1 domain-containing protein 26 12 Op 6 . + CDS 39188 - 39586 597 ## gi|228471294|ref|ZP_04056100.1| OsmC family protein + Term 39618 - 39672 16.1 - Term 39606 - 39659 18.3 27 13 Tu 1 . - CDS 39682 - 42255 2985 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 42472 - 42531 4.5 28 14 Op 1 . - CDS 43064 - 45700 3197 ## PGN_0811 hypothetical protein 29 14 Op 2 . - CDS 45708 - 47186 1460 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 30 14 Op 3 . - CDS 47180 - 48550 1332 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 31 14 Op 4 . - CDS 48575 - 49039 281 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 32 14 Op 5 . - CDS 49068 - 51089 2705 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 33 14 Op 6 . - CDS 51117 - 52244 1692 ## PG0276 hypothetical protein - Prom 52471 - 52530 3.6 + Prom 52647 - 52706 4.3 34 15 Tu 1 . + CDS 52880 - 53461 658 ## BT_0645 hypothetical protein + Term 53588 - 53644 6.6 35 16 Op 1 . - CDS 53458 - 54069 680 ## COG0218 Predicted GTPase 36 16 Op 2 . - CDS 54107 - 54667 592 ## COG1418 Predicted HD superfamily hydrolase 37 16 Op 3 . - CDS 54660 - 60392 5219 ## PG2204 hypothetical protein - Prom 60588 - 60647 3.8 38 17 Tu 1 . + CDS 60793 - 61158 403 ## gi|228469361|ref|ZP_04054378.1| transposase IS3/family protein Predicted protein(s) >gi|228306913|gb|ACLR01000221.1| GENE 1 3 - 470 757 155 aa, chain + ## HITS:1 COG:no KEGG:PGN_1476 NR:ns ## KEGG: PGN_1476 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 5 153 325 462 464 70 29.0 2e-11 TVGTEAKAIQSKDQVEQGAVITFTATPKEGYELDHWMVNGKPAVAGADTKIEGNKLIVTL GDQDLKVEATFKKVNAISQISEAELAVYPNPFAERIVITVPAECIGQTAYLTSMQGEVVL QMTLEQTETVLYTDALSQGTYLLRVGSHSQLLIKE >gi|228306913|gb|ACLR01000221.1| GENE 2 953 - 1561 830 202 aa, chain + ## HITS:1 COG:BS_ruvA KEGG:ns NR:ns ## COG: BS_ruvA COG0632 # Protein_GI_number: 16079826 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Bacillus subtilis # 1 202 1 199 201 109 34.0 3e-24 MIAYLRGTIDTLTPTNAYVDCSGVGYDVNISLSTYDTLHGLERDAPVRLWITEVMRQGEV CDLYGFYTREEQALFAKLITVSGVGPATARVILSSLAPLELAEVIESGDDKRLKMVKGIG LKTAQRIIVDLKGKLPETLTDRDDVTAGIGSRAAREVAEEAISALKMLGFAEANVRKVVK QIMTVKPDTPVEQVIKQALAQL >gi|228306913|gb|ACLR01000221.1| GENE 3 1681 - 9234 8877 2517 aa, chain + ## HITS:1 COG:no KEGG:PGN_0832 NR:ns ## KEGG: PGN_0832 # Name: not_defined # Def: gliding motility protein SprA # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 6 2516 9 2499 2499 2820 55.0 0 MVPRRRILCAWLALLCALVGVVRLLAMPALSVSATEHPAQPDSLRYPVQPTAPESYEWLE QESPLDLRTPSVVTHEFVYNPATGLYLLVTKIGGKQVGTPIPYTLEQYIAYVERNGVQSY FLERAAQDEKEQQGKGFNPFDFGFELGPAEKIFGPGGVRVRTQGSAEVSMGVKSNATDNP SIPIRSRRHTFFDFDQKIQANVQASVGTKLNFNLNYNTQATFDFDSKKLKLAYEGEEDDI IKVLEAGNVSLQSKNSLIQGGASLFGIHSKLQFGKLDVDFVVSQQEAETKRVSTDRGAQT TPFEFSANKYDENRHFYLGHYFRDHYNKAMSTLPFISSGVKINRIEVWVTNKRGNFDEAR NIVAFTDLGEAERVAARGVTTNGSTQGLPANQANSLYSWLLGQPALRQVDQVSQLLEGQL RGGDDYAKIESARRLNANEYRINDQLGTLSLQVRLQPDEVVGVAFEYTYQGKVYQVGEFS SDRSDRTADNLFVKLLKGASMTPTAPYWQFMMRNVYSLGSSVYNLKAENFKLDVFYRNDS TGTAVPYINEGKVAGQLLTRVLGMDRLDSRNEPHPDGVFDFVPGYTVDAERGLVIFTSTE PFGSYLAEQIGDPTIAERYVYREIYDTTMVAAQQVAERDKFILRGEYQAANSGQISLGAM NVTPGSVRVTAGGATLVENVDYTVNYAMGTVTILNEAILNSGTRVDVSLENRGFLNLQRK TVLGLDLNYHFTPNLTLGGTFMYLSEMPLTAKPAMGRESMQNSLWGLNLSWRTESQWLTR ILDYIPLLDLTKPSEIALNMEFAHLIPGHYEGRYTKGHSYIDDFETSQSSIDLLNPYAWM LSSTPWHDPADGVADLFPEARMVNDLRYGNRRALLNWFYIDPMLNRAGSSLTPSYLRNNP DMLSNHYSREVRMAELFPYRDENFAQQSYLQTLCLAYYPNERGPYNLNSDQVGSDGKLAN PTENWGGMMRKIDQSDFEAANIEYIEFWMMDPFIYPETAPTSGKLFFNLGEVSEEVLKDE KKFFENGMPLNDDPSATIETVWGRVPIRQTAGYSFDNAAGARSKQDVGFNGLTSEQEKAF PAYANYLSAIRGKVSGEVLEQWQGDPMSPLNDPAGDSFRHYRDERYDQLQSPILERYKYY NGVEGNSAEATNETGSYSVASRVVPDVEDINQDNTLNEQERYFEYEIALSPAEMQVGRNY IVDERSVNVKLANGKQETVKWYQFKIPVREPTRRVGGIADLKSIRFMRLYLTQWDKPVVL RFGTFKMVRGEWRQYDRPLHAPSVTPISNGTMDVNTVNIEENGDRKPINYILPPGVSRSV SPSQAQAIRQNEQSLSLRIKRLAPGDARAVYKNTGLDLRRYKRIELFVHAEELPEEGTPT GNGEMTAFLRLGSDYTNNYYEYSVPLELTPFGTYSDNAKDREMVWPKDNKVDFRFDLLTG LKMRRNAAQANGETDLYTPYSVPDAERPRNTVTVMGNPSLSNVKTIMIGVRNSAGQIKSA EIWVNELRLSEYQEQGGWATNADLQVQLSDLGSFSARGSYRTAGFGALDQSLAQRQLEDT GFLNLSTQVELGKFFPEKAKVRIPLYYSYQDEVIRPQYNPLDQDLLLTEALDNAANESVR DSIKTMALTRTQAHALSLSNVGVNIQSKTPMPYDPANITLGYSMSWDEKNSPEIVYDRNR TWQATAQYQYTPVVAPWKPFDKLQQGKNASEAVRTVTSTLRGYQINYLPSRLAFNSSILR NYSEHQVRNLMPGGGAVADWSLPATFVQNFVWQRAANVVWNPTTNLKLSFNSGTNARIVE PHVQVNRELAPDDYTLWRDSVWQSIRSWGLPMQYNQTANATYTLPLALIPFMDFVSATAT YMASYNWDRGALTQQGASMGNVVRNQMKLDGRVNILFQTLYRKFDWYKDYEKRQNKSSTR NNRSVARRDARASRSDQESTDKASAASQRKKPAPLRFTKEVVLRPDTTITITHQLGSAKP EVTAKDSLGHNYPVKYAVVNPNSITVTGTDSVTIRVNVYAADKAREMRMERLYPYIDAGI SLLTFLRDISLTYTRTSSLHLPGFLPDIKAAGGQGYPMQGMMAPGLAFAFGFTDNGYVRE AAQRGWLLKQAENINPAMYSLAEDATARLNLEPLKDLKVTLTWDYHTNRAVQTQYMFEGA PETYSGNFTAGTIGLKGFFASANASNGYKTSTFDNLLSYQQEMVQRLTNQYSAIAGADAP EVRPNSPDVLIPAFIAAYTARGLDGATPFHSIWRTLPNWSISYTGLTKIPALADLFRNFS LSHTYRNSYSVANYNSFISWQPIEQQLRMGYIEMPADGSTGGANGMRRVASSPYDITQVS IRESFAPLIGVEMTLQSGLGLNARWNKSRDLMLNLTSFQVIENSRNEISVGLNYKIDDFS KLIGIKRRAPQRTGAQAQGGKKENPLFASGGAMTLRCEYSYNHSSMLIRKIQEAFTQATN GNVAHVIKLSADYALSRMLTIRGYFDWNLNHPLVSTASFPVNNTSFGVALRISLTQQ >gi|228306913|gb|ACLR01000221.1| GENE 4 9300 - 9479 87 59 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471017|ref|ZP_04055861.1| ## NR: gi|228471017|ref|ZP_04055861.1| hypothetical protein PORUE0001_1435 [Porphyromonas uenonis 60-3] # 21 56 1 36 58 66 97.0 7e-10 MHKGESLCCFRDSASVTYGGMLPSDLTLSALRFILSAKSRQSCKQDCETVDFCNSLRQM >gi|228306913|gb|ACLR01000221.1| GENE 5 9502 - 9948 539 148 aa, chain - ## HITS:1 COG:no KEGG:BT_3989 NR:ns ## KEGG: BT_3989 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 3 147 1 144 144 77 28.0 1e-13 MTMKREVVNEQVPSGYPICTSESCSERTHCLHAHFASQVLSGERTFTLINSHHPQYQEGK ACELYRSDSPERYARGLTRAMGEMSHNNYVAFTDYLIAKHAKTQFYRIKRGDIPLSPAEQ AKLQALLRTYGCTGEEPFDSYEMRYTWY >gi|228306913|gb|ACLR01000221.1| GENE 6 10472 - 11089 534 205 aa, chain + ## HITS:1 COG:no KEGG:PG1501 NR:ns ## KEGG: PG1501 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: P.gingivalis # Pathway: not_defined # 1 201 1 195 199 77 27.0 2e-13 MEGKETKKKAAIVRESFKLFLAQGYDAVSFTDIERAAQVTRGAIFHHFRGKEDLFKHVAD QFIDAFLEDVDYGAEYLTSPTPLKDFMDNCLALIERRMTYFLKDVDVRVTSASFMSFILY LKDHHETWSEQVQEYEAEKIEAWSDAINLSKERGEIRPDTDTTMLAETFHHLYLGLSFEG AMIDTLSIPALRKQWKYLYTLHHIN >gi|228306913|gb|ACLR01000221.1| GENE 7 11153 - 13651 2051 832 aa, chain + ## HITS:1 COG:CC0815 KEGG:ns NR:ns ## COG: CC0815 COG1629 # Protein_GI_number: 16125068 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Caulobacter vibrioides # 140 643 71 558 737 97 22.0 1e-19 MERLLSTLIRKALLVMGLLLVALSVSAQTSPCQISGVVVDSVRHEAIAYATIEYKLLDEQ LTGGSVSNAQGHFQMALPRMGSYQLTIRSVGFQTKQMRVTAQAGQNNLDTIYLAPDAQTL DEVQVVARRKLIKLSPKGLTYDMKNDVLAQTDNLLFALRKVPLVTVDGEGNIRVKGSSNF SVYINGSPSRVASMNSTEVLRGIPASSVKGIEVITQVDARYDASAGDAIINIITESKSLD GYSGLVSLMSSTIPNINGTSSLTLTKGKLSVALNYNYDYTRHKDQPMDMSRRTFQGDKTT SLFKSTAVAGSNDGIFQNHVGSLMGEYAIDSLNSLYADGHLFVSSVYTTGLSQQTFDRPN EPTRYATSLNQMRLTSGSVEGNLIYRNLYAADKQPRFSIGYRYAYNPDQRYKEWTERQYR DGFTSWESSPYDETRRMERSRGGLSEHALQSDYQFIWSGGHALQVGVKEVLRLGSSRPEY HLWNEGKGDWQEVKDPLYRQGDMSQLQSLMSAYANYAWQGERFALSAGARGTLVYDKITF SQNSEGDFHKTGVDLIPTATLSYMLTDRQQLFLSYKMSPIRPSIWRLNPYRSQMTTYDIS FGNPYLQSELHHNVDLSYTFFSNQLYLSLTTGYEQTNNAIMPVRYRDPKSPEILYHTFAN AGLHRVPNASLWLNWRPIVSLSLTFFGSCRYHLFDYPSEGLTQRNWEHMLSANVDVTLPK SWYLGAAWYYYANPPTLRTTYSYSHGYSFYLKKSFWDDKLDLTLTAQHPFSQYMRFETRQ WGDDFEYNQRNMIQARAIGLKITYNFNSGKSRKVTRNESLATSDLDQRTGVQ >gi|228306913|gb|ACLR01000221.1| GENE 8 13701 - 16025 2076 774 aa, chain + ## HITS:1 COG:no KEGG:GFO_2255 NR:ns ## KEGG: GFO_2255 # Name: not_defined # Def: TonB-dependent outer membrane receptor # Organism: G.forsetii # Pathway: not_defined # 1 753 16 780 801 107 23.0 1e-21 MKKVVFVLLLVIAGQWLSAQEGAYEVKGSVSDSSGESIIGATITLQSDTTATTLTGAVSN EQGAYALRLPACGAYLIEVRCIGYKTQQQRVTITQPTTQLDFTLEENSVELSEVEVVAKH TKLQSNGNIRVQFKGNPVTKGKSMSEALRFIPSVEVTGNQLLLNGKEDNLIYIGDQQITL QQLNSIPTSMIDHIEVVPNPGVSLGQQIKGGIIYITLRTEAGLLGSVSLRTQFDQRGIVD VGPTLFLQYTKAGVSLYNTLRGGGGRYTTLYERQNKRQGEASSLVTTMSDSKKRDYAVLD NFGVKYQINKQHTLGVFGGVMYDRPKEETLLKDGAGQTLLTQGYDQRILNLNGGVSYAAR LAICEGLSIASTVSYSHSQSDGSAYYSTNEGELAESKSRTHYLTFHPRATLVFAGGNQLT GGVSYNYGLDDNDAGGVSSGTLPQIIHRQFAILGFDFSPYLEYSKMLTQRLYLQAGLRYQ TTVVHYRDLLNAQNDYTVPNRGLYPNLLLQYMLNPAKASGIGVAYRHFFSLPNYGYYSPV ATYLTKNLYSIGNQRLKQETFDEAEVNYFLNRDWQFTYRVRYGRNIIQIMTYKDESAPDL YYTQPSNVGSRWSHYASGTFNKSLFPFWRTNNILYLRYDQEQMPGRSVQSFSVGGTSTHQ FTITKMVGLSVAFSGETARQQLGYTLGGRYGLDLGCYASLLHDQLQLSLSLSNLLHSRDR ITMRMGDTTEQLRLDLSPRRRLALTISYAFSAGDRVKPVRTESAATLSLERPVL >gi|228306913|gb|ACLR01000221.1| GENE 9 16195 - 17250 542 351 aa, chain + ## HITS:1 COG:NMA0427 KEGG:ns NR:ns ## COG: NMA0427 COG0270 # Protein_GI_number: 15793432 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis Z2491 # 2 344 5 349 351 245 39.0 1e-64 MRIGVVDLFCGIGGLSYGLREAGLQILAGYDLDQTCAFAYERNNNAQFIYKDIRLVSGKE VSTLLAETDVKVLAGCAPCQPFSSYAFKSKKKDPNKYDLLYEFGRLVKEVQPDLVTMENV SQILTFKEKPVLEDFVSLLKDEGYFVYMNKIFCPDYGIPQNRKRLVLLASKFGEISLIPP THKPSNYLTVKDAIGDLPALRAGEVDRYDPLHRSKSLSPLNLKRIQRTPYGGGWQDWPED LRLECHKRENGKSFGSVYGRMVWEKPAPTMTTLCTGYGNGRFGHPTQDRAISIREAALLQ TFPKSYQFFSDEKDVSITKASRYIGNAVPPKLGEVIGNSIIKHLFHSKNAV >gi|228306913|gb|ACLR01000221.1| GENE 10 17247 - 18932 200 561 aa, chain + ## HITS:1 COG:no KEGG:DaAHT2_2185 NR:ns ## KEGG: DaAHT2_2185 # Name: not_defined # Def: ATP-binding region ATPase domain protein # Organism: D.alkaliphilus # Pathway: not_defined # 5 559 7 554 554 481 45.0 1e-134 MNTSYTFNISLSVLNHLGRNLYRSFITILGEAISNAWDADAKRVSITIDRDKSLLIIRDD GIGMTSKDFQDKFLKIGYSKRQSGDSKTPDGRPFIGRKGIGKLALLSCAKKISVITKACG SDWVGGVIDNSSLDKAISDDIPSSGYKLGVLPPSILTKYTSSFITEGSGTILIFEDINEG IRNKIEYIRQQIALSFRFSLLDPSFCITLNEVDVTINDLQELINNTQFLWKINEQTKDEY IVRLEEKATPEFRTKTFDVNQLPISGFIASIQKPSMLTIRGAQEKVSLDLYVNGRLREKD ILRHISFSRVVENYLYGQIHYNDLDDEKDRFTSSREGVIPNDDKYKALLECLKEEVMPSI INDWDKWRLELKQDGDPDNTTSLTTRERKSKALFDELSRGFVNGVQPTTQRKIDAWIQDL EPDAKFNLPAYGECFLAENLLRRYIEEQQIPLSSKQNNIEKWRKNAIEAQNKAGISIRIR EIDTDIYYYDMQLLSELSDPERDRGSKACLSRDALTYKPMRDAMAHTSRLTKDAQNLLTT TFANIKARLIKLLGSSSQNES >gi|228306913|gb|ACLR01000221.1| GENE 11 19198 - 19872 800 224 aa, chain + ## HITS:1 COG:RSc2074 KEGG:ns NR:ns ## COG: RSc2074 COG0688 # Protein_GI_number: 17546793 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Ralstonia solanacearum # 36 222 20 214 215 138 40.0 6e-33 MKKVRLHREGVGLLVSFFLILTLACWATFVFVPFKGVFILTLLVSLTVMGLALNFFRFPR RSNSEAANRRLIVAPADGKVVVMEEVEEPELLGRRCLKLSIFMSLYNVHANWVACNGTIT HVEHQSGAYYKAFLPKSSVLNERSAVIIRTDGGHEVLERQIAGAVARRIVTYPKVGDEVT VEDFLGFIKFGSRIDLYLPLGTEIAIKIGDEVVGGETTLGYLPQ >gi|228306913|gb|ACLR01000221.1| GENE 12 19912 - 20673 733 253 aa, chain + ## HITS:1 COG:SMc00552 KEGG:ns NR:ns ## COG: SMc00552 COG1183 # Protein_GI_number: 15964875 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine synthase # Organism: Sinorhizobium meliloti # 2 184 38 218 289 79 30.0 5e-15 MIKRLIPNLLTLCNILSGAAAIISILYYKEYQMGAIWIAVGAFFDLLDGMVARLLHATSP IGADLDSLSDVVTFGLAPALLALCTMEGRLLASGYVASTALMMSLPFLLILPFAAYRLAL FNNDTGTSNYFRGLPVPASALLWIGISLSSCACAVDTLSLVTSYGLLLLSCILMVSRVPM LSLKHLGAQMKASHGTVILIAWGAILVPAGCIYMWLGSVASTLRLAMLLYIIVSLAIGRQ IKSNSDAIDATQQ >gi|228306913|gb|ACLR01000221.1| GENE 13 20696 - 20977 299 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471287|ref|ZP_04056093.1| ## NR: gi|228471287|ref|ZP_04056093.1| hypothetical protein PORUE0001_0928 [Porphyromonas uenonis 60-3] # 29 93 1 65 65 110 100.0 3e-23 MEFILGLIIVIGLAYLLIRRFASRILYWMVRRYIQQADPHTKSRKAPRKGWHSAASQQSS ADAQSQQGKLDMKDIAKKKFEKDQGEYVDFEEE >gi|228306913|gb|ACLR01000221.1| GENE 14 21069 - 22223 1076 384 aa, chain - ## HITS:1 COG:all1325 KEGG:ns NR:ns ## COG: all1325 COG0758 # Protein_GI_number: 17228820 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Nostoc sp. PCC 7120 # 13 381 10 370 372 176 35.0 6e-44 MPEISREHLCIYALTQLKGVSLQLARHLIEFAGSATALWADPQALARLNSHVYTHLYPLL RDRAKLEETQALLQRTADLGILMVSIYDADYPPLLLQCADAPLILFYLGDLAPLHAEQTL SVVGTRKPSQHGVEDLQTIISHLPSVTDSVTIVSGLALGLDAVSHKAALQAGLPTVAVLA HGLHMIYPSNHRNLARSIVSHGGALLSEYPAGVKPQRHQFVLRNRIVAGLTQATLVGQSA ERGGSLITAHQAFDYDRAVYALPGRPSDRENEGCNNLIYNNIAKLITSATHLCEDLEWKK PDHEARSAVGSMSHESKLNALRARLEPKTRPLLDLLIESGDGLSIDAICDQTLMGVDEVS FRLFLLESDGAVSLQPDGRYKLQI >gi|228306913|gb|ACLR01000221.1| GENE 15 22241 - 25942 4582 1233 aa, chain - ## HITS:1 COG:PA3763_1 KEGG:ns NR:ns ## COG: PA3763_1 COG0046 # Protein_GI_number: 15598958 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Pseudomonas aeruginosa # 17 916 43 975 976 513 37.0 1e-145 MISYFVLGDTIYAVSHTSALSEETCERLSWLFGGAQLAPESHLEGTFVGPRPTQVTPWST NAVEITQNMRIAGIDRIEQLTRTHEAKPHYDPMLQAIYKGLGQESFAMTAEPQPIREITD LEVYNEEEGLALSEEEIAYLQGVSARIGRPLTDSEVFGFSQVNSEHCRHKIFNGTFVIDG LRQNDSLFAMIKQTSKENPNGIVSAYKDNVAFVKGPRVWQFAPTSATEPSLFTLRERNTV LALKAETHNFPTTVEPFNGAATGSGGEIRDRMCGGKGSLPLSGSAVYITSYPRLEKDQKL SPAKLAPRPWLYQSPQEILTKASDGASDFGNKFGQPLINGSLLTFEHQESSDSTLYGYDK VIMLAGGMGYAPQEDAKKETPQPGETVVLLGGDNYRIGMGGGAVSSVATGEYSSGIELNA VQRANPEMQKRVLNVVRSISEQGDNPIVSIHDHGAGGHLNCLTELIEETGGRIDIDALPV GDPTLSAREIIGNESQERVGLLIQEREYAQMEQIARREGSPIYKVGETTDDERLLFSTER EGRAAIDLAVSDLLGQSPKTVMEDETVAHQFAPVSYDKELWRQYLDKVLTLEAVASKDWL TNKVDRSVTGRVAQQQCVGALQLPLSDLGAMALDYDGKSGMATAVGHAPQVALIDAGAGS RMAIAEALTNIVFAPIEGGIRGISLSANWMWPCRNKGEDARLYQAVQACSEFAIDLGINI PTGKDSLSMTQKYPDGKQVMSPGTLIITAAAPVSNVRGIVTPELKAAKQSRLLYIDFSFA PMALGGSALAQALGQLGDSFPTVGDTDYFATAFEAVQELIHKGLVLAGHDISAGGMVTTL LEMCFANTQGGAEISLDALANVDLVTALYSENPGVILQVSKAEQAKRILEEYEIAYADLG APTESRLLMIHQEGKTYEIDIDAARKCWANKSYLLDCFQSGEAPATSRYENLGKQPVQWR FPHAFAGTYAGLGLEPHRTKASGIKAAILRDNGTNGEREMAYALHLAGFDVVDVHLTDLI EGRTDLADVRMLVYCGGFSHSDVLGSAKGWAAGILYNERARKAIEAFYARPDTLSLGICN GCQLMAQLGLLGKDAQGESLFKLEHNASHKFESNFLTVDIADTGAILTQGLEGCQLGVWV AHGEGRFVCPTIPDEQIAARYHYDTYPGNPNGSERGIAALCSSDGRHLAMMPHPERATLT WQCSFYPEERRQEDQVSPWIQFFRNGYEWLAQQ >gi|228306913|gb|ACLR01000221.1| GENE 16 26018 - 26740 703 240 aa, chain - ## HITS:1 COG:TM0797 KEGG:ns NR:ns ## COG: TM0797 COG2045 # Protein_GI_number: 15643560 # Func_class: H Coenzyme transport and metabolism; R General function prediction only # Function: Phosphosulfolactate phosphohydrolase and related enzymes # Organism: Thermotoga maritima # 26 232 18 216 227 117 33.0 3e-26 MREVTFDICPCPALYPYYHQEDSEVVVVDILRAGTSMVAAFDHGAKEIIPVATTEEAESF LGKGYVVAAERNAMRCPWADLGNDPSEFTAERIGGRSIVFTTTNGTQAIHAAREAGAAEI IVGAFSNLTAVARHCQASGRAVTVLASGWQNSFCIEDTLYGAALLDKLEELGTTYRLTDS SRTALELYRQHRAHLYDYLYNCDHNQRLIQRGYPESLRLCLEQDCSIHIPTLNEAGQLYV >gi|228306913|gb|ACLR01000221.1| GENE 17 26757 - 28610 1575 617 aa, chain - ## HITS:1 COG:MA2417_1 KEGG:ns NR:ns ## COG: MA2417_1 COG1479 # Protein_GI_number: 20091248 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 68 493 185 593 597 145 29.0 2e-34 MLTSSNSSFEDRVKLKQVTADFEAYRALVRGDEETIPGKVTNAYKLFIRLLTPKLQNEGL TIRHFITALQRINVVTILLDERPYKGEDPQVIFETLNSLGKPLTLSDLIRNYILLGMPSK EQTKAYDEVWQPKIEKPLGEAYLSKFFRDYLQCRDKKPYKVVSDNNTKELYYQFKEFVEQ TFTSRDSFIKDIQSYVPCYLSIIDPSHYEDATPDSETIRELLRNIFEDITSEAFKPVVLE LLHMYQAKAPATTISGALLIETLKSIRTYLIRRRVLSLTIGENMNIPLLTSYLPAIANQQ TSLMDVLTKQFYQLRLPNDKEVRDTLERIAFYKDLRSYSKFILGKMEERQTKVAVPFRDK AITIEHIMPQTLNEVWCSELGEEKAEEVHQHYLHNIGNLILTEFNSEMGNKSFADKKAQL STSTIRYSHDICQYEQWCEESILDHQNRMVSLFLDTFALPDEYKLANNWRDADKQMTEML FYPLESDPTILTGCKPKAVVLFGSKIEVKSWRTLLLLFFKNLFDQHPQAKSILFDNQKEV LGRADALILWKDLKSKQVSYKHLYKTIDNKDCYKETSDIADDCICINATLNTQALIDRIA RVMRLLDLDSEEVIIKL >gi|228306913|gb|ACLR01000221.1| GENE 18 29077 - 30168 1685 363 aa, chain - ## HITS:1 COG:BH2816 KEGG:ns NR:ns ## COG: BH2816 COG0404 # Protein_GI_number: 15615379 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Bacillus halodurans # 1 363 4 362 365 309 45.0 5e-84 MKTTPFTERHIALGAKMHDFAGYNMPIEYPTGILEEHMNVINGVGVFDVSHMGEFWVKGP KALEFLQKVSSNDASKLEVGQIQYSCFTTEQGTLLDDFLVYRYEEDKYMLVPNAANVVKD WAWCLKQNDMGADLEDGSAKVGQLAVQGPKATQVLQRLTDINLLDIPYYHFKVGTFADCP NVIISNTGYTGCGGFELYFFPQYADKIWDAIFEAGKPEGIMPAGLGARDTLRLEAGFCLY GNDIDDQHTALESGLGWITKLTDNKPALVGREALLKQKAEGVTRKLVAFEMVDKGIPRQH YDIVNEAGEKIGVVTSGTMSPALKVGIGMGYVSTEYSKIDSKIYIAVRKRNLEAKVVKPP FRK >gi|228306913|gb|ACLR01000221.1| GENE 19 30436 - 32856 1809 806 aa, chain + ## HITS:1 COG:no KEGG:Dfer_5310 NR:ns ## KEGG: Dfer_5310 # Name: not_defined # Def: hypothetical protein # Organism: D.fermentans # Pathway: not_defined # 12 803 4 791 791 419 35.0 1e-115 MRHLTKLVLLIITLAFTAYLNARLNAQEPFTQEVRGEVISAVPDDTIVGASIILVGSDPL VGTTTGSDQKFSLRLPVGRSSLQISCVGYESQEVDLLVVAGKQSVLHITLTPSDTKLDAV VVTAPYDKSTPTNRLSLAGARSFSVDEAYRFAASLGDPARMVRSFAGIMPVNDSRNDIII RGNSPSGVQWILDGIEISNPNHFNTGVGMTGGQVSYLNTNLLTNSDFHLSAWPAPYGNAL SGIFDLRLRRGNLERHEFWLQSGFGGLELGAEGYLRKGSQSSYLASYRYSVPDIMHALGF KMPVVPRYQDFTTKLHFDLGQGHTLSFVGLFSKSHIHFATNELGDSFEYADYDFSKLSYA QRIAVNATAYIAGLTHSVQFSSHTSLRTQLSFVRSDTSVPVDTMDLRGYKQSPQWHLLWS EMAQENRWTLHSDLTWHPTREGLLVAGVRGDLFDAHYLEQAADGTFAQGVRTIAEESPLY GLIRAYGQYRQRLGDYWTATAGLHSMCLTINDHYAIEPRMGVQYQPARSHTIGLAAGLYS QMLPRSFYFIRYYGPQGIEYRNKRVDFTRSAQVDLYYDWAFAPNWHAKIEGYYQELYKVP VVNDPNSIWTLLEIGGAGQNYIERQSDLVNKGRGRNYGVELTVEKFYSNNYYLLFNASLY SSTYTTGFQKEWWSTVFDGRYLVNLTGGYEWKLPKHWALFTDLKASYAGGIRYTPIREDL YKQSGRIELDKTQVNARQAKDYLRADLKIGARQIGQRITQEWAVDLQNVTNRKNVMSLLF DKGEYSTMYTQGFMPMVTYKLFFSVR >gi|228306913|gb|ACLR01000221.1| GENE 20 33758 - 33985 87 75 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPLVVTIRRLIDLVWHGCYSSTHTFMVLIEIVVARHCSITLSKTFPYFKVNVLLSSLVW ASKESPRCIAVTKAF >gi|228306913|gb|ACLR01000221.1| GENE 21 34629 - 35645 1086 338 aa, chain + ## HITS:1 COG:aq_1866 KEGG:ns NR:ns ## COG: aq_1866 COG0136 # Protein_GI_number: 15606903 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Aquifex aeolicus # 2 334 4 338 340 343 51.0 2e-94 MKIAIVGASGAVGREFLRLLEHRDFPIDELRLFGSSRSAGSEITFRGKEYKIKLLAQNDD FKDIDIAFVSAGGQTALDFASTITKHGALMIDNSSAFRMDPDVPLVVPEVNGADALHPAK RIIANPNCSTIQMIVALAPIHALSPIERVHVATYQAASGAGHDAMLELEGQVRDQAMGKP LQTKAFGNQLLYNLIPQIDIFTDNDYTKEEMKMYNETCKILHNDEIRVSATCVRVPVLRA HSEAIWVKCAEPLTVEAVREAMSQQKGLLLMDDPAKRSYPMPLHCSMQEPVYVGRLRADL AEPGCVTFWCVADQIMKGAALNAIQIAEYLIQEGAFAK >gi|228306913|gb|ACLR01000221.1| GENE 22 35669 - 36217 644 182 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471273|ref|ZP_04056079.1| ## NR: gi|228471273|ref|ZP_04056079.1| hypothetical protein PORUE0001_0939 [Porphyromonas uenonis 60-3] # 1 182 1 182 182 323 100.0 4e-87 MEQTSESNPQELVAFLTLCKDYCALIEHASEYSRADFVRRTYGYLPEIFSYLSQMPATST EELEEWLTGYTQMISDETVSYYEEQVRALLGEELDLFLHYPVGVTQDGELQPERLSRLLV LIYRELGTPLLVLREDAGELLIATLAILQYAFDTYLGDALLSALRVLHYHKNSEALEEDT DC >gi|228306913|gb|ACLR01000221.1| GENE 23 36256 - 36876 496 206 aa, chain + ## HITS:1 COG:no KEGG:PGN_1596 NR:ns ## KEGG: PGN_1596 # Name: not_defined # Def: probable 3'-5' exonuclease # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 200 1 199 200 193 52.0 3e-48 MLSSITKEEIGKLAKATFTGEIVVVDSLPQVESAVAALEQCAIIGMDTESKPVFKKYERQ SVALIQLSSESCCYLFRINKIGIPPRLQGLLEREDILKVGLDLCGDRRQLRRFSPELHPQ GFVDLQRLTPAYGIHDLGLQKIYAILFAEKISKRAQLSNWEAATLTPAQQSYAALDAYAC LRIYHRLESEPMPLLHHFGLCPEQPS >gi|228306913|gb|ACLR01000221.1| GENE 24 36914 - 38134 501 406 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 1 405 1 392 396 197 32 1e-49 MYQLYLKPHREEPLLRHHPWVFSGALQRSKESIPLGATVTILNHDGSQRLGQGVYEGGTI AVRMLTFGEEEIGEWRAFFTTRLSQALQLRKTLIQSQDGRTTNCWRLCYGESDFIPGLVI DIYREVAVIQIHALSLYPLRQLIAEVLCELPELGVHYVYDKSVETLPAQTPSDWIMPNGY LGKAPSAEYDRTVQEYGYSFLPDWERGQKTGFFVDQRDNRRLVESYARGRNVLNICCYSG GFSVYALGGGAQRVVSIDSSARAISLCEESVAINFSSDPETLQRHEAVVADAFDYLSAIE PGAYDLIVLDPPAFVKQRNHKQQGLGGYRRLNESALRAIAHGGLLFTFSCSQAVTMEEFT LAVMTAATLAGREVRILKRLGQSPCHPINIFYPEGEYLKGLLLYVS >gi|228306913|gb|ACLR01000221.1| GENE 25 38138 - 39148 591 336 aa, chain + ## HITS:1 COG:no KEGG:Gura_0781 NR:ns ## KEGG: Gura_0781 # Name: not_defined # Def: Sel1 domain-containing protein # Organism: G.uraniumreducens # Pathway: not_defined # 71 312 73 314 393 78 28.0 4e-13 MPSKSKESSSDLLSPQTTSAVAGGIDCEQLFALMTQQLTLVVDTRRSGKLYSLLQKELEA PTDHLKYLQTEGLHWLHRAARHDSLPAIDYLVKLYQPHSDRTAQNCLRRYLRQRVALRGN VEDLYALALHLTSPQTGLRKNYREASDYLRMAIQLGHPKSHLLLAQMYQRGLGVVRSHEQ YLYHLETAAEAGLVEAQIALARAYAQDGLFAQMERVEYWLTVALRQDAPEACYLLGKLWY HQDGDCYSSRVVSLWKRAAEAGIPEACYEVGRMLLTDPLQPARRTEAIRYLCQAAQSGVF LATQLLYRHHYDASGRYIGMLRESLSEYVAEEQMLF >gi|228306913|gb|ACLR01000221.1| GENE 26 39188 - 39586 597 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471294|ref|ZP_04056100.1| ## NR: gi|228471294|ref|ZP_04056100.1| OsmC family protein [Porphyromonas uenonis 60-3] # 1 132 1 132 132 248 100.0 7e-65 MKTHLIKQGAYLSQIDNQRGNSVTVDLPVASGGTAQGPTAFELLAMSLNGCIATIFTTMA EKKRLTIEHLEIDLEAKTTEGEMEAIDYTLRVKTTATDQELEKCLELTEKVCPVGRLFHR AGVPFTHRIERM >gi|228306913|gb|ACLR01000221.1| GENE 27 39682 - 42255 2985 857 aa, chain - ## HITS:1 COG:AF1664 KEGG:ns NR:ns ## COG: AF1664 COG0209 # Protein_GI_number: 11499254 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Archaeoglobus fulgidus # 25 641 7 555 752 269 32.0 2e-71 MKQKTYSFDEAYQATLDYFGGDELAAKVWVTKYALKDSYGNIYEQTPRDMHQRIARELVR IEHNYPNPLSESELMDLMDHFRYIVPQGSPMTGIGNNYQIASLSNCFVIGLDGEPDSYGG IIRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVKNSALTSTGLVPFMERYSNSTREVAQDG RRGALMLTVSINHPDSESFIDAKMTEGKVTGANVSVRIDDAFMQAVVEDKEYLQTYPVHS AEPKFTRTIQARQLWDKIIYNAWRSAEPGVLFWDTIIRESVPDCYADLGFKTISTNPCGE IPLCPYDSCRLLAINLYSYVRNPFTAEASFDFDLFREHVAKALRIMDDIIDLEAEKIDAI LMKIASDTETEEVKAAERELWRKIKRKTLLGRRTGVGITAEGDMLAAMGMRYGSDEAISF AEEVQKTLCLSAYASSVELAKERGAFDLYDTEREKDNPFIQRIAKADPKLYEEMKKFGRR NIAMLTIAPTGSTSLMTQTSSGIEPVFMPVYKRRRKVNPNDKNVKVDYTDETGDTFEEYT VYHHNFLTWMKINGYDPEKNYSHEELQELVAKSPYHKATANDVDWVAKVKMQGRIQQWVD HSISVTINLPSDISQEMVATLYIEAWKAGCKGCTVYREGSRSGVLISEEQQKKEKQAKAE QEAAAEIPVEPTTMPQAVHKRPKVLDADIVRFQNNKEKWIAFVGLLDGKPYEVFTGIADD DEGIMLPKSVTKGKIIRSYDEDGTKHYDFQFHNKRGFKTTVEGLDTKFNPEYWNYAKLIS GVLRYQMPIDQVINLVQGMELNDESINTWKNGVARALKSYLPSGTAVTAACSNCGQHTLV YQEGCLICTNCGSSKCG >gi|228306913|gb|ACLR01000221.1| GENE 28 43064 - 45700 3197 878 aa, chain - ## HITS:1 COG:no KEGG:PGN_0811 NR:ns ## KEGG: PGN_0811 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 30 878 29 872 872 490 32.0 1e-136 MPVKRSYRLLLWSFLCLLPTLLPAQIIRSTTITGLLYDRETGEPIPYATISTETLQSVTG TASNDKGAFTIKLQQELIATDSIALQINCLGYEGRTLLLDKYQNHELGRIPLFRKETVME TIIVKPKKERYRRKGNPAVTIMRQVMQHKERNHLSALPDYSYQLYQKTLLAQGDITRGKG YWGIPKWRMKSFADSSALARTPILPFSLRERHIVYAQQGGHPENPLLLGTRHCGVEQVVD EGLLSSNIDALLAPVDIYDNDLPLLSKEIIGPLHSQLGITFYKYYLRDTIPDASGNPCYQ IQFVPIELRDAGFSGTLLVDTVDYSIHRVEMRLPTTANVNWVDRLEITIDYTPQSITRPD GRSDTLWLPERQRLDALFRVSKRLNISALARVTSIYSHYATGATALRPEVLDPRLLLPAD TLQQLMTRVIDDYGLVVRPEPIDSTEQRATQLVDYILHDPGYKFFSLCARIASVGFIPIP AEPLHRERVYLDIGPLETLISANLIEGVRLRLGGMTTAKLHNQLFAEGYVTYGFKDKKWK YYARLTYATKPKELHPHSYPRNNFALSIRNDLFFPGEESYGLYKDGIASIFGTYTITRRY YGLDIEASHEIDWLPSLYSHIWVDYQRQRPTGTLHYYTIDDEGKQYEVHELRQTEIGASL SWTPGRTPYSGRKPGSIVSADIYKPSFTITGSVYPRGLWGNDQTHGALHLAYSQRLYLSI FGALDITLQSGIALGNTPQSQLFTPYGNRAWLLVPDAFQTIQPLEFIADKYLDFKFLYRM EGLLFNRIPLVKRLGLRELVGIHGYWGDTSPRHITPRPGQILLPTYAEPMRNDLHLEFSA GLSNIFKVLSVQYFYRITGQGIPPLQRHSVRLGISVSF >gi|228306913|gb|ACLR01000221.1| GENE 29 45708 - 47186 1460 492 aa, chain - ## HITS:1 COG:RSc0408 KEGG:ns NR:ns ## COG: RSc0408 COG1508 # Protein_GI_number: 17545127 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Ralstonia solanacearum # 2 490 1 499 499 199 31.0 8e-51 MLKNRQQQQLEQRQTLTARQIQQIQLLELPVTELEQRISAEIERNPALEEAYTARDDSNE SNATNEQVDSSLSQSDQDRLEARNEFGNDDEIPAYRLRMIAEREQQREEIPFAAHGLSLT DYLDNQLSTLELTERQQLLVPYIVGNLREDGYLDRSLPLIAQDLLLKEGIDASEQELAEL LQIIQSLDPPGVGARTLQECLLLQLHRMEQSETVVNAEKIVSSYFDDFAYKRFERLTKRG FDQKQLEAVSSLIHQLSPKPGNGFDSSAETLLSKVTPDFIITEHEGELTLTLTDQREIPA LTVSPSYKQMIADYRDASTSERAKLKETIQYTRDRVKDAEWFISALQQRYDTLRTTMTII MTLQRDFFLSGDIIDLRPMILKDVAELARLDISTISRVSNSKYVQCQWGIYPVKFFFSES MQAKDGSDVSTKVIKDCLKQIIDGEDPRQPLTDDQLTEELSRQGYDIARRTTAKYRQQLG LPTARLRRKLTK >gi|228306913|gb|ACLR01000221.1| GENE 30 47180 - 48550 1332 456 aa, chain - ## HITS:1 COG:TP0386 KEGG:ns NR:ns ## COG: TP0386 COG0770 # Protein_GI_number: 15639377 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Treponema pallidum # 18 455 27 454 459 189 33.0 8e-48 MRQSADINHIYDLLLQSDGICTDTRHLRPDSLFVSLRGAHFDGNRFAADALKQGCKYALV DDLSYIDAVEEADLRERLIYYKDGGFEALHELALLHRAKSEATFIAITGTNGKTTTKELV AAVLSAKYRVHATQGNYNNEIGVPLTLLQVRPEHQFVIVELGASHIGDIASLCKLAQPQY GIITNVGRAHLSGFGTPEGVVKAKSELYAYLREHDGQAFCNGEDKTLISNLNGLPTVYYN GTSSPRITGSVLPTDETGLLKIEWRDQETGESYQLATKLVGDYNLNNILAAITVGLHFGL DPKTINEAVTNYQPHNERSQVLPPTAQGNRVILDCYNANPSSMEVALNSYFTMDSQGLNR MLILGDMNELGDAAESEHITVIRQIRSYLLRYPKMVTYFCGPNFFALQGHYGNEHFIFFP SATALKQYFTRHQPQHSFILIKGSNSHHLSSIAELC >gi|228306913|gb|ACLR01000221.1| GENE 31 48575 - 49039 281 154 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 2 146 3 148 164 112 40 4e-24 MKRIGFFAGSFDPFTLGHADIVARALKIFDEVVIGIGTHPTKKPCFTAEQRTLQIETVYA QEPRIRVVSYSGMTIEAAKQCGAQFLIRGVRSTSDFEYEQSISQINDHLNGPMTVLLFGA QGLLHISSSMVRELLSWGLDVSDYVPSGMPLTFD >gi|228306913|gb|ACLR01000221.1| GENE 32 49068 - 51089 2705 673 aa, chain - ## HITS:1 COG:BB0036 KEGG:ns NR:ns ## COG: BB0036 COG0187 # Protein_GI_number: 15594382 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Borrelia burgdorferi # 21 667 6 599 599 493 45.0 1e-139 MPIQEPLNNPDQLSPSAVAGYTEDDFRTLSWSEHIRKRPGMYIGKLGDGTQADDGIYILI KEVIDNSIDEFVMGVGSEIRITIDGETNEVQIRDYGRGIPLGKLVDATSKMNTGAKIDSQ AFKKSVGLNGVGLKAVNALSSTFTVQSWREGETSSVTYERAEMIAHTPAEPWEDKEEHGT LVVFTPDAEVFRNSHYDLRHVEALVRNYCYLNTGLTLYLNDKKYVSRHGLQDFLSDTITG DPLYPIIRLTGPDIEVAITHIEQYGEEFYSFVNGQYTTQGGTHLTAFREQVARVIKEFSG KGFEYGDIRSGMAAAISIRIIEPEFESQTKIKLGSKEMVPQDPMFEHEPLRGVTVQKFVG DFLKEKLDNYLHMHPEISEVMLQTIQANERERKAMSGVTKLARERAKKASLHNKKLRDCT EHYNDPKAKNPELTSIFITEGNSASGSITQSRDARYQAVFSLRGKPLNSYGLSKKVVYEN EEFNLLQAALNIEDGLDGLRYNRVIIATDADDDGMHIRLLTLTFFLQFFPELVRRGHVYI LETPLYRVSLPAKRKKSITARVASAGKKKGGKKVTIEPASETETSAYCYSDQELNAAVER MGASAQITRFKGLGEISANEFKELITEENIKLRQVSLRKEDNLKRMLHFYMGKNTPDRQD FIIDNLVIDEEIV >gi|228306913|gb|ACLR01000221.1| GENE 33 51117 - 52244 1692 375 aa, chain - ## HITS:1 COG:no KEGG:PG0276 NR:ns ## KEGG: PG0276 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 375 21 395 395 562 69.0 1e-159 MAVEIRQIDGRKELKKFVEFNLELYKNNPYHVPGIIKDEIDLLDKDKNPSFDVCEAAYFL AYKDGKIVGRIAGIINHKANETWNQNYARFGFADFINDDEVVDKLFETVEQWGRNKGMDY IHGPMSFTDMDQEAMLVEGFDQMGTTVGLYNYAYYPKQLERLGYAKSTDWKEYLIKIPKE IPEKHQRIANLVKEKYGLKVVKYKSRKEIMSHAEEIFNTLNKAYAPLYGFSELSPAQMEY YAKAYLPLLRLDFFTAIVRERDEQMIAFAITMPNLSKAMRAAKGRLYPFGFIPLLNALKT PPKVVDLYLIGVLPEYQNKGINALIFADLIPIYNKLGVETAESNPELETNVAVQLQWSYF ERKHHKTRRVFIKEL >gi|228306913|gb|ACLR01000221.1| GENE 34 52880 - 53461 658 193 aa, chain + ## HITS:1 COG:no KEGG:BT_0645 NR:ns ## KEGG: BT_0645 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 37 193 23 171 171 95 33.0 8e-19 MKRLFTLFAGLLALLWSCSSLQAQTTTDEHEDHASWFVGGVASFWVNSDAKTTSLEFHPE LGYFFNDTWAVGLMAGYGLKSYEMTSQKALQHEFSLSPFVRYYFLHRGPFNLYLDGNVGY SYERQGEHSHQGFEVGLRPGACLDLADGLCLCMRLGFLGYRKSFHGDEPGVPSNGFGLSF TPEHLMVGLELEF >gi|228306913|gb|ACLR01000221.1| GENE 35 53458 - 54069 680 203 aa, chain - ## HITS:1 COG:FN2013 KEGG:ns NR:ns ## COG: FN2013 COG0218 # Protein_GI_number: 19705309 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Fusobacterium nucleatum # 1 193 1 190 194 146 43.0 3e-35 MLIHSATFVQSSPSVKSCPQSTLPEYAFIGRSNVGKSSLINMLTGHKGLAMTSQKPGKTQ LINHFLINQSWHLVDLPGYGYARRSLEQREQFRKLITQYVSKREALVNLFVLVDIRHEPQ RIDLEFINEMGEKGIPFSIVFTKADKIGKQVQQEAVEAYRSRLLEDWEELPPLFVTSAST GMGRDELLDYIDQLNRMIAEQES >gi|228306913|gb|ACLR01000221.1| GENE 36 54107 - 54667 592 186 aa, chain - ## HITS:1 COG:MJ0778 KEGG:ns NR:ns ## COG: MJ0778 COG1418 # Protein_GI_number: 15668959 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Methanococcus jannaschii # 23 163 23 149 169 62 34.0 7e-10 MIDPIQIIERYYPTDTLGYRILLTHSQQVAELALEVVHQHPELACDERFVYEGAMLHDIG IYLTDAPTIGCYGTEPYLRHGYLGGQLLRELGLERHAQVAERHTGTGLDSETIHARGLDL PTDRLYMPQSIEERIICYADKFYSKTQLEHQKPLEKVRTSLAKFGADSLARFDQMHEQFQ VPNTLV >gi|228306913|gb|ACLR01000221.1| GENE 37 54660 - 60392 5219 1910 aa, chain - ## HITS:1 COG:no KEGG:PG2204 NR:ns ## KEGG: PG2204 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 553 1898 538 1893 1908 434 27.0 1e-119 MTMAQQPAKSSQALYKELQELQKKRLPTQTLSCAERLATQALREGNLNYTIEALEAHKTA LRRLDYNRLLEQFPLLHTTWQGRDKLSVRDQRFLALYIANQYISRSYSQRLRSEGLSLTT QEQDSVTPRHWSDADYMKAIDPLMETAFAPSATLYKVMPRQEAKQLPDALYADQFPKEGN YTLISHLLKALPLSQLHQLEQQVGRTPSWSARIGALLTEDQLQQADEGARLYALYQAVTL EETTRGTAFSTVAKRLEGLLKQSQQMHLETMEIYKRLFPYYYYANGSDPLRAYHFIMPYL EWLDKQGKYSEFCQDIRGRLFSPKENISLTSFILADHRGMVKMKLANVERLELKLFALTP QDAIKAEGNTIPEQAKLVWSHTYQGKQGLDAMVHQSDSIELPSLPTGHYRLQVVSHRTAE AQQLEDVEQTDTMTYDCTVSDLWTLDLGNGTTQLLNALTGQAQTAPIQLWSYGDKRSGWH SNYKPTLDKIGERTPDKLGIFATPRPAKQDRAVDLLVESTDHRLLLPLCNHWYGYRGEGG SFQLLKPVSTAFLQTDRSIYQLGDAIELYAVAYRRGYDPKQAMVLPKLDLTIELHTPQDD MIDSITVQTDQWGRLHATLQLPKEAMTGYYTIEISCSNDVEEFADNSTTIHVAEYKRPSF EGSLTLPEEAMTLGDTITVRGSAMTYSGYPLAEASVNYSVTGSYRNWWFDEDVPDQLLTS GTLQVNEQEGSFEFPITLSDLRTEAMRQNPQPLSVHTYRIEVTITAPSGETQQLRRYIWI GSTPVSMEYKGAKTFFKDRPEETQTFTIRVTNEDNTPIATTLELRLTSLADTTSSWSVEV PANEKLHLPAEWLRLPSGSYRLTYIYHDKTGETLEKEQEVVLFAERDKHLPIQRVLWAAS PSEEYPRGGAPTIYYASNESLQSIYYVINTVDQPAIYGQLPALPAQQVGRWQPTLPKSID PKGQIRIELYCVRNGRYSSQSFEYHYTADQPTLQLSWIEMPDKLLAGETHTWQARLTYSD GTPARRIPVMAWMYDAALESLRSHSIYRLAQYIPLYLQNVSPNPCFRFGLEKLTPMDYGA ISGAVYGARASVPPMMALAKNESLVEDDLDLAYDEAGAKKESSNRLDEVVVTGFAAPILR KDFSQTAFFLADLYTDDEGVVTFTGKMPEALSSYRLALFGYDSRLTDCAATADIKSYRQL MVETLQPRFLMQGDQAYLTGSIRNLTEEPLRGTLRLVLYDALAADSTATPLADGTLELAL TVPASGVTPYAIALPALPDLSALRVQVYFVSGSLSDGEEYLIPVQPATVRTVESIPFAWD KQASYSYPLSALLGQASDPSASLHLQLWSNPHYFALQQLPILFNNEERDAINTVLRIYTL TRTQQLLRQPEIAQWVQAQAQAKATEGANKLTSNRKTTLLPLDETPWRATERWLDGAQEQ LWTLFKAPNKRSATKDIAQLSNLQTSSGDWSWYPDMPGSSYLTPLILDYLAAVSELEQNE EITAMLTRGWQAYDRTTTKQMQEMKKELAKSKRKPTLPAWGAEWLYLSYRWRDAKALQKD QTTKALVDYLTPLLVKEAQQLPLYALPQAAYTLYKLGNLAQARQLAEILHDHLSYEAAQG AFFANTLVGGYFWRDRSMSLQRETIELFELLGIYPDTVQQMRRWAMEYLRTNLRASNLTQ LELLLTLLEDGAGETATHDQVTISIPLADGTTKRIETDSYCGLQYKPSQLDRTGSIVITH SDPQAILWGGILSVGEKPLSEVSERQGELMIESKTYVREEINGQLQERPIQSGEKLTVGT VLITKLRITTRRDLDFVTIRDMRSACCEPLEQLSHYEWQRGLGYYVEARNYAQIYHINSL LRGSYEISYEQSVVRPGTYQRGITQAQCAYATEYSAQTAMPTPYIVIAND >gi|228306913|gb|ACLR01000221.1| GENE 38 60793 - 61158 403 121 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469361|ref|ZP_04054378.1| ## NR: gi|228469361|ref|ZP_04054378.1| transposase IS3/family protein [Porphyromonas uenonis 60-3] # 1 121 1 121 121 216 100.0 4e-55 MKQEKSNRGRKGYPLDFKWRVIDDLLATGESIATTSQRYGITARTIRNWLRTFGVELPNQ STMSKTNKNKAVDPDYAELKRENARLKAALFQAESKALVNKTLLEVVLNRYHIDLKKKTD L Prediction of potential genes in microbial genomes Time: Fri May 27 10:25:01 2011 Seq name: gi|228306907|gb|ACLR01000222.1| Porphyromonas uenonis 60-3 deg1118640599632, whole genome shotgun sequence Length of sequence - 634 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 505 473 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228306907|gb|ACLR01000222.1| GENE 1 1 - 505 473 168 aa, chain - ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 168 46 238 341 257 62.0 9e-68 MPDGRTVIPYGLEVTFDKTTHLIFPAPIRYVDLGSANIVAAKAESAENVLRVKASVKDFE TETNMSVICTDGSFYAFNVKYAKEPEKLSLEMVDFLHSGEGNLPSNKADIYFKELGNETP TLVRLLMSTIHKQDKRLVKHISAKQFGMQFGLKAIYAHNGLLYFHTSI Prediction of potential genes in microbial genomes Time: Fri May 27 10:25:04 2011 Seq name: gi|228306903|gb|ACLR01000223.1| Porphyromonas uenonis 60-3 deg1118640599703, whole genome shotgun sequence Length of sequence - 508 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 506 499 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228306903|gb|ACLR01000223.1| GENE 1 2 - 506 499 168 aa, chain + ## HITS:1 COG:STM0947 KEGG:ns NR:ns ## COG: STM0947 COG2801 # Protein_GI_number: 16764309 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Salmonella typhimurium LT2 # 3 132 85 209 227 86 40.0 2e-17 TMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYKKHGFDLKGLIFHSDRGCQYVSKQMT DYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIDQVREILSQTIALYNT ARPHRALNKKTPMQMLIPDYPNPLTTQPPKNQISKNDSPTAPSLKTPS Prediction of potential genes in microbial genomes Time: Fri May 27 10:25:08 2011 Seq name: gi|228306891|gb|ACLR01000224.1| Porphyromonas uenonis 60-3 ctg1118640599718, whole genome shotgun sequence Length of sequence - 12807 bp Number of predicted genes - 13, with homology - 10 Number of transcription units - 7, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1682 234 ## COG4886 Leucine-rich repeat (LRR) protein - Term 2073 - 2127 13.3 2 2 Tu 1 . - CDS 2144 - 2572 365 ## gi|228471319|ref|ZP_04056122.1| hypothetical protein PORUE0001_1098 3 3 Tu 1 . + CDS 3357 - 3686 72 ## + Term 3835 - 3901 30.0 4 4 Tu 1 . - CDS 3537 - 3791 251 ## - Prom 3834 - 3893 77.0 + TRNA 3817 - 3890 61.7 # Met CAT 0 0 - Term 3889 - 3938 16.3 5 5 Op 1 . - CDS 3985 - 4362 606 ## COG0251 Putative translation initiation inhibitor, yjgF family 6 5 Op 2 . - CDS 4391 - 5134 402 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 7 5 Op 3 . - CDS 5127 - 6809 2073 ## COG0497 ATPase involved in DNA repair 8 5 Op 4 . - CDS 6818 - 7723 677 ## PGN_1783 hypothetical protein 9 5 Op 5 . - CDS 7743 - 8972 1209 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 10 5 Op 6 . - CDS 9004 - 9771 929 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 11 5 Op 7 . - CDS 9782 - 10990 1401 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Prom 10934 - 10993 4.7 12 6 Tu 1 . + CDS 11202 - 11435 133 ## 13 7 Tu 1 . + CDS 11562 - 12761 1812 ## COG1748 Saccharopine dehydrogenase and related proteins Predicted protein(s) >gi|228306891|gb|ACLR01000224.1| GENE 1 2 - 1682 234 560 aa, chain - ## HITS:1 COG:lin0354_1 KEGG:ns NR:ns ## COG: lin0354_1 COG4886 # Protein_GI_number: 16799431 # Func_class: S Function unknown # Function: Leucine-rich repeat (LRR) protein # Organism: Listeria innocua # 232 421 100 290 292 119 45.0 2e-26 MSKQLRIWLFILLGSLLVSSSLLAEGVITMTTSRTVGAKIFLKIEANGNFTIEGVKIVYY ADGGFDYILTSQKVTIRGDVTKLNCESTRSKGNSLTSLDVSGCPSLTELNCLYNYLTSLN VSGCTALTKLNCSVSRLTSLNVSGCTALTKLDCSGNRLTSLNVTGCTALTSLDCAWNQLT SLDVSDCTALTDLRCSWNQLTSLDVSDCTSLKWLECKTNQRISLKASGCTALTELDCNEW NLKSLDVSGCTSLTKLYCFSNQLTSLNASGCTALTTLGCPNNQLTSLDVSGCTALTKLDC HNNQLTNLDVSGCIFLTYLECSSNNLATLDVTGCYSLESLSCEKNQLTSLNILDCPSLWS LRCSNNQLSYLDLSKNTGLEVLYCVDNQLTSLNLSGYTSLTELWCEGDQLTSLDVSGCTA LTKLACNGNQLSLNASGCTALTKLNCDYSQLTSLDVSDCTALKELYCRESQLTSLNASGC TALKELYCGESQLTSLDASGCTALTKLYCGRNPLTNINLSGCQSLKEFSWTGGKLTSLNV LGCTALTTLNCGSNQLTSLN >gi|228306891|gb|ACLR01000224.1| GENE 2 2144 - 2572 365 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471319|ref|ZP_04056122.1| ## NR: gi|228471319|ref|ZP_04056122.1| hypothetical protein PORUE0001_1098 [Porphyromonas uenonis 60-3] # 27 142 1 116 116 232 99.0 7e-60 MNNNCKSLTIQKWSNATSNNQCWEKVLAVKIPQTYNPTNFSSNSFYEQVAGDWKLSAAEI KDVHYVLIVHQKVILEIYEVAHWTQKMSDKRWVFRGQPVLRAIPQKEYPGHPFASLIGQN IDMEDSCTIQYFAISSPEDSAK >gi|228306891|gb|ACLR01000224.1| GENE 3 3357 - 3686 72 109 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGYTSRFNGNGRTTVRPYNRYSSRASRQVVIRPRHFDALRGPWHHTSEEIEIASVENGNP SRRHKKFYRKFDLLLPKFHFILPNFYFGPPWGIFVCSVEIGDFLGRNLH >gi|228306891|gb|ACLR01000224.1| GENE 4 3537 - 3791 251 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVQRYTIFPNKPTLPRKNSSISSLRLLQNFLDFSDSMQIPPEEITDLHGANENSPRRAEI KVRKNEMKLRKKQIKLPIKFFMPP >gi|228306891|gb|ACLR01000224.1| GENE 5 3985 - 4362 606 125 aa, chain - ## HITS:1 COG:DR2512 KEGG:ns NR:ns ## COG: DR2512 COG0251 # Protein_GI_number: 15807497 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Deinococcus radiodurans # 1 125 1 124 125 135 56.0 2e-32 MKKVISTPNAPAAIGPYSQAIAFGDMLITSGQLGLDPQSGAFVSEDVSAQTEQVFRNLKA ILDEAGFTFDQVVKTTCFLADMGDFAAMNAVYEKHFSGAFPARSAVAVKTLPKGGLVEIE VIAHK >gi|228306891|gb|ACLR01000224.1| GENE 6 4391 - 5134 402 247 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 4 243 6 246 255 159 33 1e-38 MIKQKLIYGIHALTESLASHSDIDKIYMKKGAATGELLEIKRTARAQGIPVMEVPAERLN RFTRGAHQGVVALISPITYTRLESLIPMLYDEGQMPFIVLLDGVTDVRNFGAIARTCECA GVHAIVIPERDSVSVTADAVNASAGALMRIPVCRERDLVTACRFLRDSGLQLVGADVDAT TNYTSLPMTPPLGIVMGSEQKGISTGVLKQLTDRVSIPQLGQISSLNVSVATGIMLYEVV RQQGATL >gi|228306891|gb|ACLR01000224.1| GENE 7 5127 - 6809 2073 560 aa, chain - ## HITS:1 COG:VC0852 KEGG:ns NR:ns ## COG: VC0852 COG0497 # Protein_GI_number: 15640868 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Vibrio cholerae # 1 558 1 553 554 268 31.0 2e-71 MLHSLYIRDYILIKELTCTFPTGLIAVTGETGAGKSIFVSALQLLAGGRADMSTIRQGCV KAVIEGEFTQLSPQVIEWMQAQELEVEESCLVRREIRQTGRSRIFVNDTPVTLAQLEELG ALLLDVHSQHRNLLLREGAYQIALIDSQLGAEADLVEAYHRSYQRYHDNAIRLKKLRTEA QQAEAEYEINSRAYEEISALKLEQYSLTDLTDEAERLTHTQEIQEGLQSILALLNRPHSI VDQLTTAQEQMEQTATYLPELSNYTERMRSLVIELDDIESDLSRLQGEVAYNPSRLEEIN TILGGINALLKKHNLLSPEELIEYSQELGAKLAHTAQYEQELATLRTEVLQQRTEVLTLG KQLHEARAKAAKSIARSVTETLCQLEMPHARFDIALQLLDKPTERGVDQVDFLLSANSDQ PLRPVTDIASGGEIARLMLALKALRSQATTSSAELASSPAIVFDEIDTGTSGIAASRIGD MLHTMGERQQIFVITHLPQIASAATQHILIYKEETRGETHSHLRLLTPEERISEIARLQS GDQITPEAIAAAHTLLTAHD >gi|228306891|gb|ACLR01000224.1| GENE 8 6818 - 7723 677 301 aa, chain - ## HITS:1 COG:no KEGG:PGN_1783 NR:ns ## KEGG: PGN_1783 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 301 3 302 302 284 47.0 3e-75 MKRLLLALVALLLWLPQQSLAQELNARVTVNADRLGSSADQAIVSDLTQQLTDMINQTRW TNATFSPVERIECAWGLNLLTASDDGLYTAELSISAQRPVYGASYTTPLVVHLDRELNFQ YAPYQQLVYSPTQIDNNLVATVAFYAYLILALDFDSFAPLGGDYAARQMQQLVATAQQMM DWSGWKAYASDNNRYAISQAYNDPAHQSWRNYWYQYHRQGLDLLTSNVRRGYTNILDQLS LLEETWQANSLSPLLQIFAQTKLDELPLLVEGASQESRTAAYKTLSKIFPTEGSKLSALK K >gi|228306891|gb|ACLR01000224.1| GENE 9 7743 - 8972 1209 409 aa, chain - ## HITS:1 COG:BH2510 KEGG:ns NR:ns ## COG: BH2510 COG0452 # Protein_GI_number: 15615073 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Bacillus halodurans # 3 398 2 390 404 285 43.0 8e-77 MRLQNKHIVVGITGGIAAYKSASLVRLLVKEGAEVQVVMTPAAKEFITPLTLATLSQHAV VSDFFDRRDGSWHSHVTLGTWADLMIIAPATASTIGKMAHGIADNILVTTYLAMRAPVLI APAMDLDMWSHPTTARNLEILAQDGVAQALPAEGFLASGLTGRGRMQEPEEILEQAVAML TAKAEKLPLAGECVTITAGPTYEPIDDVRFIGNHSSGLMGISLAEAFAQQGAEVHLVLGP THLRPTNPHIVVHSVMTAEEMLAVAEETFGRSSVAVFAAAVADYRPEERVQGKIKKERRG GEQMQLTLMQNPDIAATLGAKRRAGQYLVGFALETSVDTSAAEGKLCSKHLDAIVLNSTS DAGAGFGVSTNKVLILDKAGARCDLPLESKAVVAKQIVDFVLKHRTQLV >gi|228306891|gb|ACLR01000224.1| GENE 10 9004 - 9771 929 255 aa, chain - ## HITS:1 COG:CT261 KEGG:ns NR:ns ## COG: CT261 COG0847 # Protein_GI_number: 15604982 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Chlamydia trachomatis # 9 238 4 212 232 81 30.0 2e-15 MKLQLERPLVFFDIEATGLDITNDRIIELTILKLMPDGERIVRTRRFNPEMPIPAESTAI HGITDDDVRDCPPFRACAKSLAELIDGCDLAGYNSQRFDLPMLGEEFLRAGVEVDLLAMQ HIDVQTIFHKMEPRTLEGAVRFYCHREHIGAHGAEADTIATLDVLMAQLDKYGDELPHSV KELSDLTTYHRNVDLSGRIVLDDNDVPVFNFGKHKGRSVEEVFRQEPGYLSWLMQADFSR DTKRQFLLIKERMKP >gi|228306891|gb|ACLR01000224.1| GENE 11 9782 - 10990 1401 402 aa, chain - ## HITS:1 COG:alr2010 KEGG:ns NR:ns ## COG: alr2010 COG0592 # Protein_GI_number: 17229502 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Nostoc sp. PCC 7120 # 1 384 1 370 387 82 25.0 1e-15 MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP LECDGDMHFLIAPTPLLDYIKSLPVQPLTLEMQTTEEGARFIHLIHSTGYLDIPIGDAEL YVSRESPEDSEGAAMMSMNSSSLLSGISAVLPAAYPDTSREQLHGVHFVMLSDRLELCAT DNVQLVRYIDYDARIVEKEGEVAQASLRDPSFTLPIKVSSFLQSILPNFANEEALVIFNN KQVEVRFGTYNVVSQVSVLDFPNYNGLLPDAMTYMIEIDGQVLQRATTRVNYLSNIVGLG ADSSLLCITFEEHAMVMKGGFYAQGANTPGVDVEERIPVDYPEQMEGMQITFKTNTFIKF LKAFNAESLQLHITNATQPIMITPTKVADQTDLRGITAPVRI >gi|228306891|gb|ACLR01000224.1| GENE 12 11202 - 11435 133 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTADHCHSAHTSEEIENISVENGNPPRRDKKILPNFDLLLPKFHFILPNFYFPAPWRIFV FSLDISDFLRRGGLANL >gi|228306891|gb|ACLR01000224.1| GENE 13 11562 - 12761 1812 399 aa, chain + ## HITS:1 COG:slr0049 KEGG:ns NR:ns ## COG: slr0049 COG1748 # Protein_GI_number: 16331467 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Synechocystis # 1 389 1 388 398 542 65.0 1e-154 MTRVIIIGAGGVGTVVAHKVAQNAETFTDIMLASRTKSKCDAIAAQIKNVKIQTAQVDAD DVEQLVRLFESFRPDICINVALPYQDLTIMEACLKAGVNYLDTANYEPLDEAKYQYSWQW AYHDRFKEAGLTAVLGCGFDPGVTSIFTAYAAKHHFDEMHYLDIVDCNGGDHHKAFATNF NPEINIREITQKGKYYHEGEWIETEPQEIHRPLHYPGIGVRESYLLYHEELESLVKHFPT IRRARFWMTFGEEYLKYLEVIQNIGMASIEPINYNGQEIVPIQFLKAVLPNPQELGENYT GETSIGCRIRGVKDGKERTYYIWNNCSHQAAYRETGTQGVSYTTGVPATTGALMLAKGIW GGAGVFNVEQFDPDPFLEEVARQGLPWHESFDIDIEFEK Prediction of potential genes in microbial genomes Time: Fri May 27 10:25:34 2011 Seq name: gi|228306888|gb|ACLR01000225.1| Porphyromonas uenonis 60-3 deg1118640599723, whole genome shotgun sequence Length of sequence - 967 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 481 - 540 1.6 1 1 Tu 1 . + CDS 612 - 966 391 ## COG2985 Predicted permease Predicted protein(s) >gi|228306888|gb|ACLR01000225.1| GENE 1 612 - 966 391 118 aa, chain + ## HITS:1 COG:HI0035 KEGG:ns NR:ns ## COG: HI0035 COG2985 # Protein_GI_number: 16272010 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Haemophilus influenzae # 20 118 7 109 551 62 38.0 2e-10 MDSLRAFFNELFVIPSVPQSIIVISLVSLVGLLLARIRIARISLGVTFVFFVGILLSYWG ITLEARTLDFGMNFGLILFIYALGLQVGPAFFPSLKKGGIQDNIDSLLLVVVNIALVV Prediction of potential genes in microbial genomes Time: Fri May 27 10:25:55 2011 Seq name: gi|228306828|gb|ACLR01000226.1| Porphyromonas uenonis 60-3 ctg1118640599584, whole genome shotgun sequence Length of sequence - 78806 bp Number of predicted genes - 64, with homology - 60 Number of transcription units - 28, operones - 15 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 482 280 ## PG1474 conjugative transposon protein TraO 2 1 Op 2 . + CDS 495 - 926 399 ## PGN_0056 probable conserved protein found in conjugate transposon + Term 976 - 1024 8.2 - Term 969 - 1007 9.2 3 2 Op 1 . - CDS 1038 - 1409 256 ## - Prom 1433 - 1492 2.7 4 2 Op 2 . - CDS 1495 - 2601 241 ## PROTEIN SUPPORTED gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase - Prom 2709 - 2768 2.8 - Term 2668 - 2695 -0.4 5 3 Op 1 . - CDS 2877 - 3290 388 ## PGN_0048 hypothetical protein 6 3 Op 2 . - CDS 3313 - 3744 427 ## BF2919 hypothetical protein 7 3 Op 3 . - CDS 3741 - 3962 60 ## - Prom 3995 - 4054 3.1 - Term 4026 - 4069 10.6 8 4 Tu 1 . - CDS 4104 - 4451 222 ## PG0814 hypothetical protein - Prom 4512 - 4571 3.4 - Term 4535 - 4587 3.0 9 5 Op 1 . - CDS 4604 - 5077 371 ## PG0816 hypothetical protein 10 5 Op 2 . - CDS 5105 - 6346 1112 ## COG4974 Site-specific recombinase XerD - TRNA 6707 - 6794 45.1 # Ser CGA 0 0 11 6 Op 1 5/0.000 + CDS 7285 - 7890 748 ## COG0576 Molecular chaperone GrpE (heat shock protein) 12 6 Op 2 . + CDS 7926 - 9086 1228 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 13 6 Op 3 . + CDS 9133 - 10377 1091 ## BDI_0486 hypothetical protein 14 6 Op 4 . + CDS 10374 - 11927 1094 ## PGN_1457 probable alkaline phosphatase 15 6 Op 5 . + CDS 11939 - 15271 4186 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 15285 - 15326 4.5 16 7 Op 1 8/0.000 + CDS 15404 - 16297 1262 ## COG1561 Uncharacterized stress-induced protein 17 7 Op 2 . + CDS 16317 - 16883 765 ## COG0194 Guanylate kinase + Term 16912 - 16972 14.2 18 8 Tu 1 . + CDS 17058 - 18284 1021 ## PGN_1195 hypothetical protein + Term 18411 - 18449 -0.8 - TRNA 18406 - 18476 61.5 # Cys GCA 0 0 + Prom 18677 - 18736 5.5 19 9 Tu 1 . + CDS 18956 - 19135 125 ## - Term 19103 - 19147 -0.5 20 10 Op 1 13/0.000 - CDS 19223 - 20137 889 ## COG0167 Dihydroorotate dehydrogenase 21 10 Op 2 . - CDS 20131 - 20952 544 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases - Prom 21008 - 21067 3.0 + Prom 20929 - 20988 3.0 22 11 Op 1 . + CDS 21183 - 24137 3160 ## COG0178 Excinuclease ATPase subunit 23 11 Op 2 . + CDS 24160 - 25545 1496 ## PG1037 hypothetical protein 24 11 Op 3 . + CDS 25547 - 27883 2439 ## COG0210 Superfamily I DNA and RNA helicases 25 12 Op 1 . + CDS 28042 - 28998 924 ## COG2070 Dioxygenases related to 2-nitropropane dioxygenase 26 12 Op 2 . + CDS 29017 - 29961 1010 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 27 12 Op 3 . + CDS 29958 - 31076 1033 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) - Term 30762 - 30820 -0.6 28 13 Tu 1 . - CDS 31060 - 31269 91 ## + Prom 31081 - 31140 3.2 29 14 Op 1 6/0.000 + CDS 31308 - 32390 1633 ## COG1932 Phosphoserine aminotransferase + Prom 32416 - 32475 2.2 30 14 Op 2 2/0.000 + CDS 32495 - 33415 1442 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 33431 - 33481 14.3 31 14 Op 3 . + CDS 33509 - 34753 1809 ## COG4198 Uncharacterized conserved protein + Term 34769 - 34831 9.1 32 15 Op 1 . + CDS 35083 - 35670 602 ## COG0009 Putative translation factor (SUA5) 33 15 Op 2 . + CDS 35734 - 37119 1626 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 34 15 Op 3 . + CDS 37130 - 38926 2048 ## COG0038 Chloride channel protein EriC 35 15 Op 4 . + CDS 38937 - 39911 863 ## COG0223 Methionyl-tRNA formyltransferase 36 15 Op 5 . + CDS 40007 - 41230 911 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 37 15 Op 6 . + CDS 41249 - 42910 1523 ## COG0513 Superfamily II DNA and RNA helicases + Prom 43139 - 43198 4.0 38 16 Tu 1 . + CDS 43221 - 45377 3061 ## COG0480 Translation elongation factors (GTPases) + Term 45411 - 45457 14.2 + Prom 45651 - 45710 2.7 39 17 Tu 1 . + CDS 45916 - 47145 225 ## COG4974 Site-specific recombinase XerD 40 18 Tu 1 . + CDS 47700 - 48317 270 ## COG4974 Site-specific recombinase XerD + Term 48347 - 48398 -0.5 + Prom 48376 - 48435 7.7 41 19 Tu 1 . + CDS 48505 - 49152 168 ## gi|298377861|ref|ZP_06987811.1| conserved hypothetical protein + Term 49177 - 49216 6.7 - Term 49204 - 49258 -0.7 42 20 Op 1 . - CDS 49264 - 49566 278 ## BF0655 hypothetical protein 43 20 Op 2 . - CDS 49572 - 49850 139 ## BF1793 hypothetical protein 44 21 Tu 1 . + CDS 50293 - 51483 796 ## COG5545 Predicted P-loop ATPase and inactivated derivatives + Prom 51658 - 51717 3.8 45 22 Tu 1 . + CDS 51849 - 52829 282 ## PGN_0923 putative DNA primase + Prom 52911 - 52970 2.2 46 23 Tu 1 . + CDS 53164 - 54420 707 ## BVU_2464 mobilization protein + Prom 54988 - 55047 3.5 47 24 Op 1 . + CDS 55081 - 56493 1674 ## COG0534 Na+-driven multidrug efflux pump 48 24 Op 2 . + CDS 56505 - 57656 1039 ## COG1408 Predicted phosphohydrolases 49 24 Op 3 . + CDS 57661 - 58650 981 ## COG0276 Protoheme ferro-lyase (ferrochelatase) + Term 58675 - 58720 7.5 - Term 58663 - 58708 11.3 50 25 Tu 1 . - CDS 58747 - 61383 3154 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins - Prom 61407 - 61466 3.6 51 26 Op 1 . - CDS 61611 - 62225 573 ## COG1739 Uncharacterized conserved protein 52 26 Op 2 . - CDS 62244 - 63653 1344 ## PG1035 hypothetical protein 53 26 Op 3 . - CDS 63692 - 66685 2647 ## BDI_1187 hypothetical protein 54 26 Op 4 . - CDS 66675 - 67364 599 ## Cthe_2176 abortive infection protein 55 26 Op 5 . - CDS 67364 - 68041 771 ## BDI_0816 hypothetical protein 56 26 Op 6 . - CDS 68051 - 69574 1740 ## COG1388 FOG: LysM repeat - Prom 69600 - 69659 2.6 - Term 69844 - 69884 8.1 57 27 Op 1 . - CDS 69909 - 71054 1029 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 58 27 Op 2 . - CDS 71086 - 71631 600 ## COG0806 RimM protein, required for 16S rRNA processing 59 27 Op 3 . - CDS 71624 - 72934 1384 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 60 27 Op 4 . - CDS 72977 - 73663 686 ## PG1367 hypothetical protein 61 27 Op 5 . - CDS 73684 - 75051 1372 ## COG0166 Glucose-6-phosphate isomerase 62 27 Op 6 . - CDS 75088 - 76095 1054 ## COG0240 Glycerol-3-phosphate dehydrogenase 63 27 Op 7 . - CDS 76157 - 77896 2288 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 78094 - 78153 4.2 - Term 78299 - 78336 1.0 64 28 Tu 1 . - CDS 78404 - 78754 394 ## gi|228469589|ref|ZP_04054581.1| transposase Orf2 Predicted protein(s) >gi|228306828|gb|ACLR01000226.1| GENE 1 3 - 482 280 159 aa, chain + ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 1 159 34 192 192 192 62.0 3e-48 LVGSIPIIKGERLCAKESFGVGLAFAHYFKRANYAFLLAEYEQQGLTYRSYNVPLRDALL HFGYMHPILSDRGKNIFGYLGLSALCGYEELNEDKRLLPDGATLLDRSRFTYGGAIHSSV ELFLTDNLLFVLKAQGRLLFGSDLHRFRPAISAGFKFNL >gi|228306828|gb|ACLR01000226.1| GENE 2 495 - 926 399 143 aa, chain + ## HITS:1 COG:no KEGG:PGN_0056 NR:ns ## KEGG: PGN_0056 # Name: not_defined # Def: probable conserved protein found in conjugate transposon # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 143 1 143 153 222 74.0 4e-57 MKQKMLNTLWVMGGLALALFCLSACNRELDVQQSYPFTVEAMPVQKSIAKGETAEIRCFL KREGNFAGTRYTIRYFQPDGKGTLKMDDGTVFQPNDCYPLTKEEFRLYYTSFSTDRQTID IYVEDNHGQLQHLSFDFNYKRTE >gi|228306828|gb|ACLR01000226.1| GENE 3 1038 - 1409 256 123 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKDWNASVQYGDLKGTSAADGHENALFNMDKYLKQKGVDTDRYKPIGIDFYAGEGHLSFR FICEDQSSDTKEVVSIGFEKEQDMNDLFVILKRLNVMLLPRNFSPEEYDWTNFDSSIMIE DRF >gi|228306828|gb|ACLR01000226.1| GENE 4 1495 - 2601 241 368 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148987750|ref|ZP_01819213.1| ribose-phosphate pyrophosphokinase [Streptococcus pneumoniae SP6-BS73] # 46 352 12 312 317 97 28 2e-19 MDRTLSTIQHIIQRSRERKALPLAPTEADNCYLSGRSNEYQDMSQLTAQQRYTIAQLLKQ GKTQKEIALTIEKDKSVVSREIKRNSNKDGTYTATEAQMKADKRKRRLRSYRTFTSEMER IIKLFLTKHQWSPEQIVGHCKNKDIPMVSVERIYQFIREDKECDGSLYKHCRHSLKHRKR SVGKNAGPIKDRTFIDDRPKEANGERFGDWELDLIVGPNNQGAMVTLVEGNTLMTLIRKL SNGKKAEDVANAVYLMLAPYRKHNAVLTITTDNGSEFALHKEIAKALNVDIYFAHPYCSW EKGCIENTNKLIRQYIKKKVAFNNYSTEEVRRVQKLLNNRPRKKLNFLTPGQLFYQKIDE TNSVAFDS >gi|228306828|gb|ACLR01000226.1| GENE 5 2877 - 3290 388 137 aa, chain - ## HITS:1 COG:no KEGG:PGN_0048 NR:ns ## KEGG: PGN_0048 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 137 1 136 138 144 59.0 1e-33 MKGTEHFTRTIAEYLNQRAITDPLFAPNLQKPNKSIEECITYILNEVQRSGCNGFADDEI YSMAVHYYDEDNIEVGNPISCRVAVNHVVELTEKEKAEARQEALHRYQYEQYQQLSKRAK ARTAKQAEAVTIQKTLF >gi|228306828|gb|ACLR01000226.1| GENE 6 3313 - 3744 427 143 aa, chain - ## HITS:1 COG:no KEGG:BF2919 NR:ns ## KEGG: BF2919 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 36 140 4 108 109 120 55.0 2e-26 MNKQKVNMTSSMKEKGYSSSSHYRISNDLSVSEQPLASKFVQWDVNPLESLQASKVYLLR VKLNRGERMSREEKDWLCEAVNSNSYFRTAVPLQGWRFDFFDVLKKYLVNQYGQWAEYYA PDRTSLRAYLYGRINQIVEIPKY >gi|228306828|gb|ACLR01000226.1| GENE 7 3741 - 3962 60 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFLFHRKGSTGLKNFPKVRPFGLSGKSPPLCCSLRVVFSAKTLCKSRPATLFLLEKRNQ HTPIFERIKKGLL >gi|228306828|gb|ACLR01000226.1| GENE 8 4104 - 4451 222 115 aa, chain - ## HITS:1 COG:no KEGG:PG0814 NR:ns ## KEGG: PG0814 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 115 1 115 115 105 56.0 5e-22 MNRFLMNKDLHSPAFIRASVPADKEEPLQAASKTTPSNEIKWSRIIRLTLLIGILSGGVY LLSKLVTAQVVTALLILIGFVVLRFIVRTVLQITFTLLRYLFWIVVLAVILLCVL >gi|228306828|gb|ACLR01000226.1| GENE 9 4604 - 5077 371 157 aa, chain - ## HITS:1 COG:no KEGG:PG0816 NR:ns ## KEGG: PG0816 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 151 1 151 157 221 77.0 6e-57 MKTTNKKELSYFRLKLESYLSEHFPEKVEDKPFITARADEALTTYCDAVEEGFSYPEAES MASEVLYRDLHFSKYDTLVSVLENEFEKELPSPLPERLAPILLKNRAIQGTFDKYNLTDE FVATPEYDTLYTELTGTVVLLIEANQLPMIGDVSALE >gi|228306828|gb|ACLR01000226.1| GENE 10 5105 - 6346 1112 413 aa, chain - ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 319 394 217 292 296 62 44.0 2e-09 MQSIFRTAFYLRSNYVNKEGKTPVMLRIYLNNERMSLGSTGITIVQSQWDREKERVKGRH TEALNTNLQLDNIQSGLQAIFRKLEMTDELSLERIKSEHLGKKQDIDTLMQLFDKHNEDV AARVGISVSAPTLQKYKVCKRRFSEFLKDKLRRSDLKLTELTYMIIHDFDLYLRTVVGQN PNTATKTMKTFKTIVILGQKLGVLHHDPFVNFRFHLEPVNRGFLTDEEVLQIVNKELNIP RLELVRDIFIFSCFTGLAYIDVANLTPDNIVMLGGKEWIMTKRQKTSVETNVLLLDIPKR IISKYSHQTYRDGKLFPILSNQKTNSYLKEIADICGIKKNLTFHLARHTFATMSLSKGVP IESVSKMLGHTNIRTTQIYARITNKKIEHDMEQFADKLGKFNTAMGIGENSWQ >gi|228306828|gb|ACLR01000226.1| GENE 11 7285 - 7890 748 201 aa, chain + ## HITS:1 COG:alr2445 KEGG:ns NR:ns ## COG: alr2445 COG0576 # Protein_GI_number: 17229937 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Nostoc sp. PCC 7120 # 4 200 35 229 248 89 34.0 5e-18 MKKDNKKGGKPTEPQHIEASQETENKQDASQNSCEATDECETDAAATQCEEQRLAELQES LNKLNDQHLRMLAEYDNYRKRTLQEKSDLIKNGGERVLKELLPIVDDFELAVKHARESKS EEDPIIEGLLLIYNKLIGYLEKQGVVRIEATGAPFDDNLHEAVAMIPAPTPEQKGQVIDC VRTGYMLHDKVLRHAHVVVGN >gi|228306828|gb|ACLR01000226.1| GENE 12 7926 - 9086 1228 386 aa, chain + ## HITS:1 COG:STM0013 KEGG:ns NR:ns ## COG: STM0013 COG0484 # Protein_GI_number: 16763403 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Salmonella typhimurium LT2 # 4 364 3 350 379 273 45.0 3e-73 MATKKDYYELLGVSRDASADEIKKAYRKQALKYHPDRNPGDKEAEEHFKEVAEAYDVLSD PDKKSRYDQFGHSGVDGASGFGGFGGGGGFTVDDIFSRFGDIFGGGFGDYFGGGRGAGSG RAQRPMGSDLRVTVRLTLEDINSGVEKKLRVKKLIQCDSCHGQGTTESDGKRSCSTCGGA GVVYDVRNSIFGQMRTQSVCPTCGGSGEVVTKPCAKCHGKGVTQGEEVVSFRIPAGVVGG MQLTLQGKGNAAPQDGIPGDLLVVIQEEQHKDFIRNGNDLIYNLLIPIHTAIRGGQVTVP TIDGSARLKIEPGTQPGKVLRMRGKGLPSVQGYGRGDLMVNVNVFIPQKTSAEDESLIDQ LAKAEHFNPTEADRKAIDKKYREMLE >gi|228306828|gb|ACLR01000226.1| GENE 13 9133 - 10377 1091 414 aa, chain + ## HITS:1 COG:no KEGG:BDI_0486 NR:ns ## KEGG: BDI_0486 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 22 377 13 359 395 186 34.0 2e-45 MVRMNAVWARLTLLIASLCIALSSTASAQEPLSTDSLITATAEGHHRIISILLCTPSQAD AYTIYGHAAMRVRSLDDLEDDYVYNYGVFDFDQPGFYTKFIKGETDGYFVQQEPWNYFIY RYHTYGQNVYELELDLSPEQEEAICSYLAWNIKEENKYYLYNFAFDNCATRPYSIVKQTL PKGWRIELPQVAKEESLRSLIDAYADYHPWYRLSTQLALGAPADTTMTVEDRLFLPMEMD RLLQQATLVTPTGAKPLVSNRIVYETPTPAPQPVAHWWQEPVVWFSLLLVVSGVLCYLRR SRYWIPLMMTAYACAGFILSFLTFVSIHPCTDPNYNLLVFHPLLLLAWFALGRGGKAQRI ARYFHSVNTLAVALFLILVACAVQTSSLPIILLAIHSALLSVAYLTYSKRQTRR >gi|228306828|gb|ACLR01000226.1| GENE 14 10374 - 11927 1094 517 aa, chain + ## HITS:1 COG:no KEGG:PGN_1457 NR:ns ## KEGG: PGN_1457 # Name: not_defined # Def: probable alkaline phosphatase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 510 3 520 525 217 29.0 8e-55 MRSIRYLLLALTLPLALSAQRARPDILVQIYVKGLRTDLLDSYRAGWGSNGFNWVMKQGT VAPDIRYPYPLLDEVARLASLSAGAMPEIHGVYQAERYDAVTQRSESTFANRDYRGINSA EQLAPAGALRSELLTDVLRGSSQGDAIVYAIASRANDAIAVAGHDAEGAIWIDKHSGWWA TTNFYGGLPALALKANNEQHMLGGRTTPTIWKPLAKGAKEGSFAHTFEGAWRMSDLLTSP FANDAITDLSKEFIRYAHKAHRTSPTLIVMVLDLEVGARGVAYADYSPEQQDAYARLNEQ VQQTTALLQELYGTDHYALNIIGVPVANLAQPKTPSRRSVVTFDPAKCIALANLYLSAIY GRNDWVIAYSHQTLHLNKKEIADKKVDMEDMSNNLATFVSEMEGVIGAIPAYQLQRGLSQ PAWAKPLYSRSYRSYAGDVLLALAPFAVVAGEKQGTEQQRQRRVSAPFILMAPGVASQRL TEPISYDAVAPSLAYLLCVPQPMSADGTPLFTLFNQK >gi|228306828|gb|ACLR01000226.1| GENE 15 11939 - 15271 4186 1110 aa, chain + ## HITS:1 COG:PA4403 KEGG:ns NR:ns ## COG: PA4403 COG0653 # Protein_GI_number: 15599599 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Pseudomonas aeruginosa # 6 1108 5 914 916 672 38.0 0 MALSNIITKLFGSKSQRDLKEITPYIKKIEEVEPSIQALSDDALRDRTQQLRNEINEYVA SERAEIAKLKEGIEDLDIDAREEAWSKIDKIEKEVLEKIEVKLDEILPTAFAIVRETARR FANNEQIIVTATQMDRDLSIDHDFVEIDGDKAIYHNHWVAGGNEITWDMVHYKVQLIGGV VLHKGKIAEMATGEGKTLVATLPVFLNALPGNGVHVVTVNDYLAKRDSEWMGPLYMFHGL SVDCIDKHKPNSEGRRKAYNADITFGTNNEFGFDYLRDNMATAPSDLVQRPHNYAIVDEV DSVLIDDARTPLIISGPTPQGEDQLFEEYLPNVEKVVNAQKDLVSKLLVEAKKKIASEDK KEVDEGFLLLFRVFKGLPKYKPLIKFLSEPGIKASMLKTEEIYMAENMRQMHVVTDPLYF VIDEKMNSITLTDKGIEMLSKGAEDASFFVLPDIASQLAELEGEGLAPSEYAAKKDELIT NYAIKSERVHTVNQLFKAYALFERDDQYVVIDNKVMIVDEQTGRLMDGRRYSDGLHQAIE AKERVKVEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPV IRDDQNDRIYKTAREKYNAVIEEIERLIAAGRPVLVGTTSVDISELLSRMLSLRKIPHQV LNAKLHQKEADIVAQAGQSGTVTIATNMAGRGTDIKLSPEVREAGGLAIIGTERHESRRV DRQLRGRAGRQGDPGSSVFFISLEDHLMRLFASDRIASLMDRMGFGEGEALENKMLSNSV ERAQKKVEENNFGIRKRLLEYDDVMNSQRKGIYEKRRHALMGERIGMDVLNMLYDVTEAI VNKNKEADDYEGFRNELLSVLAVETEFTPETFKSAHTNEVVDKTFETVYQALNHKGEKIA SVAYPILHNLYETQGDKFKRIIIPITDGNKVYNIPCDLAEADRTEGKSIVKEFHKTIMLY TLDDAWKEHLREMDELRNSVQNASYENKDPLLIYKLESYELFSDMLDGLNRKTATILTRG RIPVPENDENGSSLSVREAQTERRTDRSQYRETKDEIASQQEAQRQAGQAATQASQPKAQ PIVKEQKIGRNDPCPCGSGKKYKNCHGRNA >gi|228306828|gb|ACLR01000226.1| GENE 16 15404 - 16297 1262 297 aa, chain + ## HITS:1 COG:BH2514 KEGG:ns NR:ns ## COG: BH2514 COG1561 # Protein_GI_number: 15615077 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Bacillus halodurans # 1 296 1 293 294 142 35.0 9e-34 MIYSMTGYGSSQLLLEGVTYEVSIRSVNSKQLDLSLRLPSILRDREIELRGILIPALFRG KVDVTIRTADNSLGTSPHVQINAPLLHAYYDQIHSAIEAEGIPQPEDLTRLLLSYPGVIV EQGEMPLTDEDMQLLSQAIGEAIDQFNAFRVQEGASLERIFVEKLDRIAALLAEVDPYEQ SRITDLRSKLEERLAQLTSIQYDEARLEQELIYYIEKLDISEEKNRLANHIHYFREVLAQ TGDPDPSRGKKLGFIAQEMGREINTLGSKSNNAAMQQLVVQMKDELEQIKEQVLNVL >gi|228306828|gb|ACLR01000226.1| GENE 17 16317 - 16883 765 188 aa, chain + ## HITS:1 COG:UU213 KEGG:ns NR:ns ## COG: UU213 COG0194 # Protein_GI_number: 13357772 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Ureaplasma urealyticum # 4 188 6 190 191 148 37.0 6e-36 MSHLIIISAPSGSGKSTVIQQLMQDESLRLSFSISATSRPPRGNEQHGVEYYFYTPEQFK KLIAEDRLVEYVEVYPGKYYGTLRSEVDRLGAMGRNILFDVDAVGAMRIQEAYRDKVVSI FLMPPTFAELRRRLESRGTESPELVEERMRRASYEINFAEQFDHTVVNDDLKLCVSQVAQ IIRDTISK >gi|228306828|gb|ACLR01000226.1| GENE 18 17058 - 18284 1021 408 aa, chain + ## HITS:1 COG:no KEGG:PGN_1195 NR:ns ## KEGG: PGN_1195 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 406 2 403 407 192 31.0 2e-47 MLSQQDIEQAVSLSRLWADRSPDRILFERSELEPELKRQIALQVSLLPKMQRKVPHFLQG GGYVPHRVNFEQSSSEFTARYKQEFVTDRDRVLDMTGGMGIDALSMASVAECSLIYEIDP VMAQALTYNVHKLLQRDNVTVRCGDALAEMDSSTLEGVTLVYADPARRDMDDRNKRLISM DEYSPAPLQIIARLQELGYAGRLLLKLSPMLDIHWILEQLPQAAELHIVQVQDEVKELLV AISMAPQETNVALHLALIDRLGEVSRWSFPYEALSSVRTPYATSVERYIHIPQPLLMKSG AYHLIAQEQSLSLLGPNSHIYTSSQASTSPLYKSYRLIEEIDYSKSTLRGKSLHSLRQRY PALTIMSRHFPLTAQELKKTLRTDESDTYYLLATTLGEQARKLLILTS >gi|228306828|gb|ACLR01000226.1| GENE 19 18956 - 19135 125 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSVSTEEFPDNSRENENPSRRAEIKVRKNEMKLRKKEIKVPKNFSVPRWIVKDCHRGIF >gi|228306828|gb|ACLR01000226.1| GENE 20 19223 - 20137 889 304 aa, chain - ## HITS:1 COG:BS_pyrD KEGG:ns NR:ns ## COG: BS_pyrD COG0167 # Protein_GI_number: 16078618 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Bacillus subtilis # 11 300 8 297 311 315 55.0 6e-86 MVSTSVNIGGGIILKNPILTASGTFGYGLEFDPFQDLNELGGFIVKGTTLHPRQGNPYPR MAETTAGMLNCVGLQNRGVDYLVEHILPQLSHYDTEVLVNVSGSTIDDYVACAERLNDHP KVRAIELNISCPNVKEGGMSFGVNCESAHEVVSAVRKAYKGHLMVKLSPNVTDITAIARA AEEAGADSLSLINTLLGMAIDVKTRKPKLSTITGGLSGPAVKPIAVRMVWQVSQAVSIPV IGLGGIASVEDVVEFLLAGATAVQVGTYNFVEPDIASKLVHGLSNYLEENHISDVNELIG ALSC >gi|228306828|gb|ACLR01000226.1| GENE 21 20131 - 20952 544 273 aa, chain - ## HITS:1 COG:L183563 KEGG:ns NR:ns ## COG: L183563 COG0543 # Protein_GI_number: 15673329 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Lactococcus lactis # 50 272 36 261 262 136 37.0 5e-32 MYMDRITTSQPAIVDATILHNEQVAPRYHLLTLRLEVSSSDASWLQGVAPGQFVQVDCRP AGILLRRPISIYKWSREELCLTLLVQRVGRGSNYICDLTEGDKVNIVGPLGTPFATDPTI AGERPLLIAGGVGMAPIIMLARHLQQLSGVRPHLIIGARTASLLILRDEIAQIGCSYSYT TDDGSYGTRGAVLAAPELELDKYSMVYTCGPRPMMRAIHNWAKAHNVPGQASLENLMACG VGACLCCVENIANQGNTCVCTEGPVFNFDQLLW >gi|228306828|gb|ACLR01000226.1| GENE 22 21183 - 24137 3160 984 aa, chain + ## HITS:1 COG:MTH443 KEGG:ns NR:ns ## COG: MTH443 COG0178 # Protein_GI_number: 15678471 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Methanothermobacter thermautotrophicus # 32 964 9 945 962 905 51.0 0 MDQNKQTVPHTERPSDSDTHASAADQGLWAMGAIEVHGARVHNLKNIDVSLPRHKLTVVT GLSGSGKSSLAFDTLLAEGQRRYLDTFSSYARSFIGGGGGRPDVDEIVGLSPVVAIEQKS ASTNPRSTVGTVTEIYDYLRILYARVGTPYSYLTGKEMVRYTEEQVVEHIMEQYADEGIY ILAPVVVDRKGHYRELFEQMRRRGFLHAYIDGEVCELTPGMRLNRFSIHYVSVVVDKCSV RESNKQRITEAVSIAMKLGEGVIDVMRRDSTEIQHLSKRLMDPESGIAYPDASPADFSFN SPRGYCKRCKGLGRVGVLDIDKVVADPKVSIRDGAIVPIGRYKKRSLLFTSIDEILTEHG CTIDTPFEKIPAEAVEQIFFGIDSDDSDDEGEAHFAFEGVSQYVRNLAEDDDATASMRSW AEEFLTEQTCPECNGRRLNPIALSYKLAGYTIADLTELDLDRLEGRLREIEGQLTKNQQK VAHEVIKEILLRLTFLLDVGLYYLTLARPSASLSGGESQRIRLATQIGTGLVEVLYILDE PGIGLHQRDNRMLIDALKKLRDAQNTVLVVEHDRDMMLAADYLIDMGPVAGRLGGHVTYQ GPPSEIGDTHTLTCDYLTNRLAIPLPTSYRQPTDDAWLRLKGCTGNNLKNVDVSIPLGLF VCVTGVSGSGKSSLINGTLVPIISQHLYRSKQAPLPYSSVEGLELIDKIAFVDQSPLGRT PRSNPATYTGLFSEIRNLFVQVPESRARGYKPGRFSFNVKGGRCEECKGNGYKTISMNFL PDVTIPCDVCRGKRYNRETLEVRYKGKSIAEVLDMTFNQAVEFFEHIPALYRKLATLQRV GLGYVKLGQPSTTLSGGESQRVKLATELSKRDTGRTLYVLDEPTTGLHFEDIRVLLKLVN ELVDRGNTVLIIEHNLDVIKSADYLIDMGLEGGRNGGELIFAGSPLEMAQCPDKQSYTAQ YLKEEMQRTPKTESDEQASSASHS >gi|228306828|gb|ACLR01000226.1| GENE 23 24160 - 25545 1496 461 aa, chain + ## HITS:1 COG:no KEGG:PG1037 NR:ns ## KEGG: PG1037 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 7 420 4 428 459 344 39.0 5e-93 MEQTDPKKLSNRYCPEGMSVEAWQIALRKQFAEQNEFTVSHLDNNRIWGDYMVQSGSNHY RVAFRGVRSDRNYCACLDFRTSGLGTCKHVEAVINYLSEEVPGYPWGTTPFQPDRTSIFI SYKGGRTIECSIGKGKEELYADWQARYFEGTLLPPKHYHLIDQITEEAKELSSTFQCYDD VYEMIRGYLRLHNWRGLVARTLPDGELPQPYAQAIASPEMRQTLYKLLHQSYSIIPAPHS ETIIEPIIALMRFVSVHDAGRMLIVVRSEAEQSLWYTLLDQRGVTEGVTVALSSEVNRQN TSISGAYSLVFVACGEKLSKWTDPISIALKRLAIKHLYISVPHLSLFTPLQFSSITQHID PYLLGPTYLFIEDAKQFFPMTDLPERLPERLDGLVTFLPDDPTIRTYEPQLPSTPSKEPV CDDEALPYQLLQALRDAIADPKRRIRLLDTLDSILQEEEQE >gi|228306828|gb|ACLR01000226.1| GENE 24 25547 - 27883 2439 778 aa, chain + ## HITS:1 COG:BH0648 KEGG:ns NR:ns ## COG: BH0648 COG0210 # Protein_GI_number: 15613211 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Bacillus halodurans # 4 745 17 712 747 434 35.0 1e-121 MVDLTALNEAQRVAVVYNEGPALVIAGAGSGKTRVITYKLAHLVDQGWNPQRLYALTFTN KAAGEMRSRVSEMLGEGIAYRLRMGTFHSICGRILRRYAPLLGYSQDYSIYDTSDTKALI RNCIKELDLSDKSYTPTRVLKRISDAKNMLISPQAYAANQEIRKYDTMNQEGELYKLYSL YTQRCKESNSMDFDDLLFLLNVLIRDFPEAHQEIKSGIDFLLIDEYQDTNTSQFELARHL VADHNRIFAVGDDAQSIYSFRGARIANILSFKQAFAGAKLFKLEQNYRSTGHIVSSANAL IEHNQQRIPKEVYTDLGEGEKLQLYHYTSSDEEATRLIDIITQRHDEEQIPLSDQTILYR TNAQSRKFEEVLLSEGIPYVIYGGMAFYARAEIKDAIAYLQLIINPHNELALRRAIAYPR KGIGDKTIEKVALYAQQHSPQLSLYDALCAAIDSADPVGLSRGVRNKIASFVNLIDSLAS AYQHYAKLEEWIAHILRESGIVAELTREDTVESQAKLDNLKEFISSASEFEARYRQDPLN LFAEEPLGTELLSAFAQQIPLLTNQDQDNVEQQSGVALQDRLQLMTIHVAKGLEFPYVYI AGVEENLLPSSRSLDTAEMIEEERRLLYVGITRAQKLCTLSYTSIRTRNGKTELMIPSRF IAELPRAHYTLHEEAAPIGTSVRSYANSYQPTTNSQRPTATSPSASSATAQQMLAKSSPV NALESLDGYHVGDRVRHPRHGDGEIQRIESAMGGKLTIHFDDGKTREVLIRYTHLDHI >gi|228306828|gb|ACLR01000226.1| GENE 25 28042 - 28998 924 318 aa, chain + ## HITS:1 COG:CAC3576 KEGG:ns NR:ns ## COG: CAC3576 COG2070 # Protein_GI_number: 15896810 # Func_class: R General function prediction only # Function: Dioxygenases related to 2-nitropropane dioxygenase # Organism: Clostridium acetobutylicum # 1 302 2 301 310 235 40.0 7e-62 MKNRLCDLLGIRYPIIAGGMIWCSGWRLASAVSNAGGLGLLGAGSMYPEVLREHIARCRE ATDRPFGVNVPLLYPEIDTLIQIIIEEQVPIVVTSAGSPKRFTLLLHEHGIKVMHVVSST KFAVKCQEAGVDAVIAEGFEAGGHNGREETTTMSLIPAVAQAIDLPLVAAGGIASGRSIV AAQSLGAEGVQIGTLFALSEESSAHAAFKEACVKSDEGDTILTLKELAPTRLLKNDFYQQ VATLQARGASADELQELLGRARAKRGIFEGDLAEGELEIGQVAAQIEQVQPVAQIFDNLI AEYNAARAELLDMNWTNC >gi|228306828|gb|ACLR01000226.1| GENE 26 29017 - 29961 1010 314 aa, chain + ## HITS:1 COG:ECs3340 KEGG:ns NR:ns ## COG: ECs3340 COG0329 # Protein_GI_number: 15832594 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Escherichia coli O157:H7 # 13 297 2 285 292 204 39.0 2e-52 MYDKYTYHPYRHLTGAGVALITPFLENGQVDSASLSRLTEHIVSGGCDFVVLLGTTGESP TVVYPERLLLIDVVRRTINGRCPLVIGVGSNNTQDLCQRMSDPIYDNVDAILSVVPYYNK PTQEGLYLHFMAVAEASKKPIILYNIPSRTGCDLQPETVARLQRDSAKIIGIKEASGHVE RIDQIRELCRPDLLVYSGDDHLTKDIIRAGGDGVVSVVANAYPQAIKALVSALITEQREQ ADEIDALFTEMYQLLFKEGNPVGIKGLLHTIHLIETSAVRLPLCHATEQLTSHLRAAHEE LLAPLQQLGIEPKL >gi|228306828|gb|ACLR01000226.1| GENE 27 29958 - 31076 1033 372 aa, chain + ## HITS:1 COG:SP2227 KEGG:ns NR:ns ## COG: SP2227 COG1195 # Protein_GI_number: 15902031 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Streptococcus pneumoniae TIGR4 # 1 363 1 358 365 153 29.0 5e-37 MILSSLSVINFKNVATANCHFAPKLNCFFGGNGMGKTNLLDAIHYLSVVRGHLGTTDRYA IRHGAQEAIIQGEYLWDDGQEDKISLRISAERSKQLSRNGRLYKRHSDHIGRYPLVIISP HDQRLIRGGSDERRRSVDRILSQQDATYLANLINYNRALDQRNNMLRNQIHEPALMDILE ETLATTGLAVTTMRQAYVEELVPTFDQIYQHLAAGVERAVLSFSAGSASTAEEQLRILRN GRQRDYEYGFTATGCHRDDFEMLLGENLMRKIGSEGQNKTYLIAYKLAEYRYLQQHLTNQ TAPLLLLDDIFDKLDSDRVERIIELVATDTFGQIFITDTNRKYLDEIISSKQVPYRLFQI QEGSPTEVTAGC >gi|228306828|gb|ACLR01000226.1| GENE 28 31060 - 31269 91 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCAIGGLDVLLLLCLEGTKGKLFRVSSLCPYKDTELKWRNKLFPQDFALKSFFQAQRVLF SYKMTSTLR >gi|228306828|gb|ACLR01000226.1| GENE 29 31308 - 32390 1633 360 aa, chain + ## HITS:1 COG:lin2957 KEGG:ns NR:ns ## COG: lin2957 COG1932 # Protein_GI_number: 16802016 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Listeria innocua # 4 356 5 352 363 323 47.0 4e-88 MKKHNFYAGPSVLNRGVIERTADAVLNFADMDLSLLEISHRSKQFQAVMDEAVATFKELL DIPEGYEVLFLGGGASLQFYMVPLNLMGKKAAYLNTGTWSTNAIKQAGYVDKVFGTETVV VASSEDKNFTYIPKNFTIPEDVDYFHYTSNNTIYGTEIRKDFDCKVPLVADMSSDIFSRP VDVSKYDCIYGGAQKNMGPAGTTFVVIRKDALGKFERVIPTMLDYQTHVKKGSMFNTPPV LPIYTCLQTMKWYKEMGGVKAMEQRAKEKADALYTEIDRNKLFRGTVEAEDRSRMNVCFV LNDEYAELQDDFFNFATERGMVGIKGHRSVGGFRASLYNGLEMESVQALIQAMQDFEKKH >gi|228306828|gb|ACLR01000226.1| GENE 30 32495 - 33415 1442 306 aa, chain + ## HITS:1 COG:PAB0514 KEGG:ns NR:ns ## COG: PAB0514 COG0111 # Protein_GI_number: 14520969 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Pyrococcus abyssi # 3 297 5 306 307 149 35.0 5e-36 MTKVLIATEKPFAPVAVDGIRKIVEGAGFELVLLEKYTERQQLLDAVKDVDAIIVRSDKV QADVFEAAKNLKIVVRAGAGYDNVDLEAATKHNVCVMNTPGQNSNAVAELAFALMLAMVR NHFNGKSGSELKGKKLGIQGFGHIGRCLAKIAHGFGMEVYYNKRHRLDAAEEKELGLTYC SQEDLFKQCDIVSLNTPKTAETVKSINGKYVKMMPQGGLIVNTARKEIIDEECFLAALKE RTDVRYATDIQPDMHEEYQKELQDRYLATAKKMGAQTAEANINAGLAAANQIVGFIKDGC ETFRVN >gi|228306828|gb|ACLR01000226.1| GENE 31 33509 - 34753 1809 414 aa, chain + ## HITS:1 COG:CAC0016 KEGG:ns NR:ns ## COG: CAC0016 COG4198 # Protein_GI_number: 15893314 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 413 1 413 414 415 48.0 1e-115 MAIIKPFKGYRPPQNLVEKVNSRPYDVLNSDEARKEAEGNPMSLYHIIKPEINFPAGTDE HDPKVYDEAVKQYQHFKKEGWLVQDDKECYYVYAQTMNGKTQYGLVIGAYVEDYLNGVIK KHELTRRDKEEDRMKHVRINNANIEPVFFAYPDNAELDKIVAKYTAQKPVYDFVANDTFQ HQFWIIDQDQDIKRITELFGQMPALYIADGHHRSAAAALVGAEKAKQNPNHRGDEEYNYF MAVAFPANQLTVIDYNRVVKDLNGLTSEEFLKKLEKDFVVEKKGTEIYKPSKLHNFSLYL DGNWYSLTAKPGTYDDSDPIGILDVTISSNHILDEILGIKDLRSDKRIDFVGGIRGLGEL KKRVDSGEMKVALALYPVTMKQIMDIADTGNIMPPKTTWFEPKLRSGIVIHELS >gi|228306828|gb|ACLR01000226.1| GENE 32 35083 - 35670 602 195 aa, chain + ## HITS:1 COG:AF0781 KEGG:ns NR:ns ## COG: AF0781 COG0009 # Protein_GI_number: 11498387 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Archaeoglobus fulgidus # 4 167 5 164 309 95 36.0 6e-20 MNQVSPSPETLSAAREAVDVLQRGGIILYPTDTIWGLGCDATNEEAVDRLSALKGRPTGK PMLMLVDSDMRIPSYVRTVPSMAYQLIDVAVRPLTIIYPGGRNVAPQLLAEDGSIGIRIA SDTLCQEICRLLRRPLVSTSANLAGTTSPHNYSEIDHELIKLVDYVVPLRQEEHIDGMPS DIIKLGLNNEVRVIR >gi|228306828|gb|ACLR01000226.1| GENE 33 35734 - 37119 1626 461 aa, chain + ## HITS:1 COG:all2854 KEGG:ns NR:ns ## COG: all2854 COG2148 # Protein_GI_number: 17230346 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Nostoc sp. PCC 7120 # 269 461 277 469 469 171 43.0 4e-42 MSKKSRQATVRLRYIVSDLVAVLLATTLFNVVRYVVEDQSATFGELSLFLFNTKMYWVTL VVVLFWMGFLTLSGYYNKVLAKSRIDEFFLTAGSVFVGVVIEYLFLVVDDVIDGRSAHLL LFALLYLTHFLLIYAGRLTITLQQIRYDRTPEHWPHILLIGTPEVMDKLQAVRMEMHYHA VAELPFGSEPVTLEQVQAILEEQPIEAIYMVANEADTLRATHLLYELYRCKLPIKIYLEG VMGVRSSLQARTLRGLPLHDVTQTQMSEMERNVKWLFDRLFSLILLLLLSPLFAVLAVLV RRSSEGPVFYRQERVGRSGKPFWIYKFRTMYTDAEAAGPQLSHEGDKRVTPLGAKLRKYR LDELPQFYNVLRGDMSIVGPRPERTYYIKQILERAPYYYLLHQLRPGITSWGMVRYGYAS TVDEMVERLYYDWLYYEHISIKLDLAVLLCTVGTIIKGKGK >gi|228306828|gb|ACLR01000226.1| GENE 34 37130 - 38926 2048 598 aa, chain + ## HITS:1 COG:RSp0020 KEGG:ns NR:ns ## COG: RSp0020 COG0038 # Protein_GI_number: 17548241 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Ralstonia solanacearum # 27 448 32 447 461 127 26.0 5e-29 MTTTTTRTSLLQRFILWRETHISERIFVLILSFIIGILTALAAFALKQLIGTIQHLLMPA IRQANVWYLILPPIGVLLTAGVVKLFIRDDISHGVTKVLGAMSQRKSRIKPHNMWSSLLA SSITIGFGGSVGAESPIVMTGAAIGSNTGRLFKLEQRQLMLLVGCGAAGAIAGIFKAPIA GLVFVVEVLLLDLTLSSVLPLLISSVTSATTAYLLTGQQAMFSFYQNDPFTAERIPYVIL LGIACGFTSLYFSKVMFALESWLKGRNNFFKRYGISMLILSVAIFLFPPLFGEGYSTLSD LMAGQYSSVTDNSIFASFGSNYWVIFAFLLCTMLVKVFASVATNSGGGCGGLFAPSLFVG GLCGFVFAYALNFFPFIEVYLPQKNFVLMGMAGVMAGVMHAPLTGTFLIAELTGGYNLLL PLMLVAICSYGTIRIFMPHSIYSLRLAQKGKLMTHSKDQAVLTVMSIDNVIETDFDKVYP DMTLGELVQVVGRAKRNLFPVVERETDKLLGVVSLDDIRNIMFRPELYDRYKVDRIMVSP PARIQSNMHMDHIMHLFDETKAWNLPVVTPEGQYLGYVSKSKIFNTYREVLNVLSPDE >gi|228306828|gb|ACLR01000226.1| GENE 35 38937 - 39911 863 324 aa, chain + ## HITS:1 COG:fmt KEGG:ns NR:ns ## COG: fmt COG0223 # Protein_GI_number: 16131167 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Escherichia coli K12 # 4 312 3 302 315 211 42.0 1e-54 MKKDQVRIIFYGTAPFATACLERLVDEGYPIVAVVTAPDKPAGRGHRLQPSAVKVCATKL GLPILQPTNLRDEAFVQQLTELKPTLGVVVAFRMLPREVWSLPPWGTVNIHGSLLPQYRG AAPINWALINGERETGVTLFQLRHEIDTGDIIAASACPIEPEDDFGTLYDKLMALGAELL AHGLSLLMQHDGRYPQALPQEEHPDLRPAPKLTKENTRIDWHQSAHEIHNLVRGLAPQPG AWTMLELPNEEPLLVKIYATTLPQQEANERPVGQCLSPRKGQLAVQCGDGLLLIDQLKPQ GKKLLSARDWLNGLKVSVEEVRFV >gi|228306828|gb|ACLR01000226.1| GENE 36 40007 - 41230 911 407 aa, chain + ## HITS:1 COG:ECs0991 KEGG:ns NR:ns ## COG: ECs0991 COG0128 # Protein_GI_number: 15830245 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Escherichia coli O157:H7 # 26 399 82 425 427 103 28.0 9e-22 MARLAHLPIPSLWRQIDLCEDLAVMLHASGSSEGRISVGASGTAMRLLTALFALTTEREV LLVSPVRRMTERPLAQLITLLSQLGADLAQPSSQEPVEGLYPLVRIRPMNPQQKGLLPTL TLPSGLESSQTVTALLLIAPYLPHGLALRWQDDQLPSASYIQLTCSLMQACGIDLSVDRH GIYVAPGTYCEATLTRLLSHPIGDWSSAQYPLQWALMTPRPCQLFLTNVPALSLQPDARA LELLQISPEWLSAGDDTLCFDSEFLQKHLRKLTFGSISLSNNPDFAPTLIALLLYYQKKA QLRGLDHLRLKESDRIALILRNGEQLDYQLSYETESGFCLAGSAPSSVHTPVPIATDADH RMVMAWAPFAWYHQLQIETPQAVDKSYPTFWRDLRKLCEIIATPLYI >gi|228306828|gb|ACLR01000226.1| GENE 37 41249 - 42910 1523 553 aa, chain + ## HITS:1 COG:BH2384 KEGG:ns NR:ns ## COG: BH2384 COG0513 # Protein_GI_number: 15614947 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Bacillus halodurans # 1 553 6 527 539 326 36.0 6e-89 MTFDTLDLSPELLRATTDLGFSEPMPVQQEVIPYLSTHRGDLIALSKTGSGKTAAYGLPL LERIIQAKGSAPCGLILTPTRELAIQVQSDLVALAKYTSVRQILALYGGASIEEQIRQLA KGYHIIVATPGRLCDLIRRKAVKLRKVSVVVLDEADVMLDMGFQRDLQEILQAVPQQVEH WLFSATMSREVREIADNYISDAHEVQIGALNKANADIKHLYVAVPARHKYAALKRVVDYY PNIYGIIFCRTRAETKEIAEWLIRDGYNADALHGDLSQAQRDMVMNRFRIRNLQLLVATD VAARGLDVDDVTHVLHYGLPADPDSYTHRSGRTARAGKTGLSIAICHLRDSKQIRIIEQH AGIRIESMPLPSGQEICKKQLFALATRIEYADSNEHGTQYDELLNAIVQKLAWLPPEEII RRVLTLEADRIMRYYANTPDLSAQELATEEPKYRTKGSPEEHRKAPKKRSRTDLPPMTSL RINLGKRDKLYPNRLLELINRTLPYKITIGKIDLSPSYSYFEVASEWAETVAAALSEEEY NGRPIRVTIQKDR >gi|228306828|gb|ACLR01000226.1| GENE 38 43221 - 45377 3061 718 aa, chain + ## HITS:1 COG:FN1546 KEGG:ns NR:ns ## COG: FN1546 COG0480 # Protein_GI_number: 19704878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Fusobacterium nucleatum # 1 709 3 684 690 422 35.0 1e-118 MQLYQTSDIRNIAVIGGSGSGKTTLAEAMLFESGVIKRRGTIEAQNTVCDYFPVEKEYGY TVFSTLFSVEFANRKLNFIDCAGSDDFVGGTVAALHVTDSALAVVNAKEGVEVGLINQMR IIEQLHKPVLFTINQLDSDKADYESTVAGLKARYGGKVVVIQYPVQEGLDFHQVVDVLNM KMYQWKPEGGTPEELEIPADQRERAEELRQALIESAAEHEEHLMETFFEKGSLDEEEIVQ GMRKGIVLGDMYPVFCVSALKDMGVRRTMTFLGDVAPRVTESALPVTTEGVEVAPDATAP VSLYFFKSTVEPHIGEVSYFKVMSGTLKEGMDLTNANNGSKERLGQINVVAGAQKEKVSQ LVAGDFGAAVKLKDVRRGATLNDKGVDYQFPNIEYPAPKYRRAIVPVNGADAEKLSEALT RMQEEDPTWIAQQSKELRQLIVYGQGEFHLRTLKWRLENNDKIPVTFEEPRIPYRETITK AARADYRHKKQSGGAGQFGEVHLIVEPYEEGKELPSVFRFNNQEFKITPRDTQTVELAWG GKLVFVNSVVGGAIDNRFMPAILKGIMERMERGPLTGSYARDVRVIVYDGKMHPVDSNEI SFMLAGRNAFSEAFRNAGPKILEPVYSVNVTVPADYLGDVMSDLQGRRALIMGMSSDGNY EQLSAKVPLKEMSDYSTSLSSLTGGRASFVMKFDAYELVPSDVQEALLKAYTEESEEE >gi|228306828|gb|ACLR01000226.1| GENE 39 45916 - 47145 225 409 aa, chain + ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 322 398 217 292 296 59 42.0 9e-09 MQTDKMKVLLYLKKSGLDRSGQAPIMGRITYGRTIAQFSCKLSCDPKLWNARESRLNGKS REAVATNGKLERLLFSAQSAYQTLCERGIVFTATDIKELLQGSMQSQITFLERYDRMVEE MKQKVGIEIKGTTLSSYFTIRKHLRAFIEEKFHTSDIAFGLIEEDFLDCLQRYSVGKLEH SQGHYRKMALAVKKVCRLAYREGLITRQLFAHVTIERGENKRPRALDRASLDKLQSLTFE PYEVELETARDLFLFACYTGVAYCDMVTLSREHLFTDDEGALWLKFRRQKTNTLCRVKLL SEAVRLMERHQSEERTTLFAPIAYSVYLAQLKALQLRAGISIPLSAHVGRHTFATLITLE RGVPIETVSRMLGHSNIQTTERYAHVTPKKLFDEFEQFLSFTEELTLTL >gi|228306828|gb|ACLR01000226.1| GENE 40 47700 - 48317 270 205 aa, chain + ## HITS:1 COG:BS_ripX KEGG:ns NR:ns ## COG: BS_ripX COG4974 # Protein_GI_number: 16079408 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Bacillus subtilis # 13 196 94 285 296 65 26.0 1e-10 MYRAVSQGTIRFNPFEEVKYEVVERKPRFLSKGDVSKLLAFPFQDKGAELSRRMFLFSVF TGLAFVDLQGLRASQIETNSEGKRYIRKARQKTEVESLIPLHPIAEQILALYTKAKSRGD YKIFPDTMSDWKLLRHLKAVGLACGIRTPLTWHCARHTFGTLTLEAGIPIESIAKMMGHS SIASTQIYAQVTDQKIAKDMERLME >gi|228306828|gb|ACLR01000226.1| GENE 41 48505 - 49152 168 215 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|298377861|ref|ZP_06987811.1| ## NR: gi|298377861|ref|ZP_06987811.1| conserved hypothetical protein [Bacteroides sp. 3_1_19] # 4 211 1 196 198 63 31.0 8e-09 MAQMRKMLVLICSVGLVLLSSCKNSKNEPIVTEEPTLEEIHANGAKTLNEILLEYEKSIQ GEGEVSEVPQSKTPLRGYKPVQRTTYYGFTRDHYLAGKPQLCYLNVDLYRGYYLVDIHSV VLEVKAKPFTEYEQVESPKCGYIPTTYTDTSHTMPNRFDNPTRGCFNDGYQAGGRQYFRT YYIKVAYSISGEQINRTLPDYPQNFEWNVAYREAE >gi|228306828|gb|ACLR01000226.1| GENE 42 49264 - 49566 278 100 aa, chain - ## HITS:1 COG:no KEGG:BF0655 NR:ns ## KEGG: BF0655 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 4 93 2 91 97 88 44.0 7e-17 MEYETINKETPEMKQLISGIKGLTNRVRSIAQTHRPLFEGEIYLTGREVCERLFLSPRTL QDYRDKNIIPYTQIAGKILYRLSDINRILSENYHPINLGV >gi|228306828|gb|ACLR01000226.1| GENE 43 49572 - 49850 139 92 aa, chain - ## HITS:1 COG:no KEGG:BF1793 NR:ns ## KEGG: BF1793 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 84 1 86 97 70 41.0 3e-11 MRFTAIDTSAWEELKECIEELTKSFNEQFAPPAQFPDLLHNGDVCRILNISKRTLQHYRD SSVLPFIQIGHKCYYKREDVEALLANSNTRKG >gi|228306828|gb|ACLR01000226.1| GENE 44 50293 - 51483 796 396 aa, chain + ## HITS:1 COG:all8519 KEGG:ns NR:ns ## COG: all8519 COG5545 # Protein_GI_number: 17232892 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase and inactivated derivatives # Organism: Nostoc sp. PCC 7120 # 4 379 281 645 836 70 23.0 7e-12 MKIGEKDSPSKNDQIEAYLSAQYQFRYNTVLHRAEYRLRGKGDYTSVDRYRINTLKRALD KEANIQTSTDNLYSIIESDFSPRINPVQDYFRALPLTKGNAEAITALADCVQVTNSEKWE EYLTKWLVAVVANAMDDKQCRNHTCLVLTGEQGKFKTTFLDLLCPPALSDYRYTGKIYPQ EKDVLSLIGQNLLINIDDQLKALNKRDENELKNLITCPQVKYRMPYEKHIEERPHLASFV ASVNGNDFLTDPTGSRRFLPFEVSAIDIDSAKEIPMDAVYGDAKRLLHEGFRYWFNDEEI IELHRNSEAFQVYTTEMELLLRYFTFPSEAETATKRFYMTNSEIVGYLSCYTRQPLSPKR MGEALRKAGYTRECRRINGNPVYVYAVRKIYPEQPP >gi|228306828|gb|ACLR01000226.1| GENE 45 51849 - 52829 282 326 aa, chain + ## HITS:1 COG:no KEGG:PGN_0923 NR:ns ## KEGG: PGN_0923 # Name: not_defined # Def: putative DNA primase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 19 326 2 295 295 193 39.0 6e-48 MNTNNPNPKTTAMNNEYYDLQHLKAIPIADYLHTTYGIEPAKRYNGYALYHAPYREDFNA SMKVDFWENLWHDYGTGQGGSIIDLVMRMQGCSAYEAMKHLAGKRETVIAPSSFHREDHI EHRRDEQRANNRRHILSISDELPSHLQRYLREVRKIDLAVASGYLRHIHYEVGGREYSAI GFPNRSGGYELRDDNAFKGTIAPKDISVIAGREDNAPLCIFEGFMDFLSLLTINGKETAP CLVLNSVSNISRAIAYLQEQDIDSVRAFLDNDPVGRQALLTIQSSGVTVEDMSRHYARYK DLNEFLVAQREAQKQKIVPRKRGLRR >gi|228306828|gb|ACLR01000226.1| GENE 46 53164 - 54420 707 418 aa, chain + ## HITS:1 COG:no KEGG:BVU_2464 NR:ns ## KEGG: BVU_2464 # Name: not_defined # Def: mobilization protein # Organism: B.vulgatus # Pathway: not_defined # 1 409 1 426 446 283 40.0 1e-74 MGYAVLHIDKARGNDSAMSAHIERTFVPNNVDASRTHLNRDLVQFPANVTNRTEAIAHRI ATAGIYRKVADNQVKALRFILSGSHEDMLQLESDGRLEEWCHSTMQWLYTTFGKANVVAA TLHADEETPHIHATVVPIVTGERRKAKQEAENGKRKYKTKKNKIRLCADDLLTPKKLEEY QTSYAEQMRPFGLSRGVQGSEAKHRTNMEYYKELLKETKQKQLEEEELIQKVRELEKQAG KLRVKGTLYSLFGNSELDKAEQRIEELEQEVERQQHLSEKEKAEIRKEVILLQDTIRDKD KTISEQHREIKVYEEERSFIKRFFHSFYLLLNIRLMLRKMGFDDDTVVKMHKDQEIVRGT ATAYSRMYKRNFTEENAELRIITNEKRQPILTINRLSVPDWCEQKWKQLVNRNRSQRL >gi|228306828|gb|ACLR01000226.1| GENE 47 55081 - 56493 1674 470 aa, chain + ## HITS:1 COG:CAC0883 KEGG:ns NR:ns ## COG: CAC0883 COG0534 # Protein_GI_number: 15894170 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Clostridium acetobutylicum # 20 450 6 432 448 307 39.0 4e-83 MNDREIEAPEQAEDNKRTQDLRTQPIPKLLLQYAIPAVVGTVVQALYNIVDTIFIGQGSG ELGIAAVYIGFPLIILLVGFSMLVGTGASVGVSIALGRRDSDRADRILSNAVYLTFGFYI LAVTPSIIFLEDLLRLIGASDNIIPLAKDYLHIYLPAVILSNLTYGYNNVMRASGYPTKA MITMIIGAVINVVLDYFFIMHFGWGVKGAAWATVIAMFCTMVFVQYHFFQRKSVVRFKRQ NMKPSGSILLSIISVGIAPFAMQVAGSAVSFVLNHNFARFAKSVAEADLSIATYGIINNY TTLIALTIIGVAQGMQPIVGYNYGAGHIERSLSCYKLAVGVNTVISILGFAAAMLLPEQL FILFNASPELIEIGRRAIRIVFCVFFVVGFQITTSQLFQSLGLSRQAIFISLTRQIIFLL PALLILPHFYGIDGVWYAIPLGDLLATVVSASMIIYYFKKWTSEQPSPLA >gi|228306828|gb|ACLR01000226.1| GENE 48 56505 - 57656 1039 383 aa, chain + ## HITS:1 COG:jhp0380 KEGG:ns NR:ns ## COG: jhp0380 COG1408 # Protein_GI_number: 15611448 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Helicobacter pylori J99 # 132 377 123 364 370 118 33.0 2e-26 MHVLLYTLFIQLIGILYLVWRGGQAMPRGWWRRSLRGVLLADLLFVLVVVLLRHQLSSAL LTFSIVFVCSWAFVLLYIVPLVLLINGGRLLYKRITGQTVRSRLGDRGYQRAKWVLFFAT VAISAILMMYGYQQAATPHIVEHKVELTKPLGADREHLRVLFVSDLHFSETIGRPFAERL VELYKKTAPDLMLVGGDIFDYYPDPAYLDSIPEIMQQITPPLGCYYVLGNHEYRSDMAKK KAWIKLVGGTLLVDSIATPGGVVTLIGRDDYTQRGRATLSELIGQIPQESQQLPRILFEH QPRQLDSLASNGIDLALYGHTHDGQIFPFTLLVRAYYPIAHGFTERYGTPVYVSSGYGAA GPAMRLFTNSEVVVFDLYSTSKQ >gi|228306828|gb|ACLR01000226.1| GENE 49 57661 - 58650 981 329 aa, chain + ## HITS:1 COG:PA4655 KEGG:ns NR:ns ## COG: PA4655 COG0276 # Protein_GI_number: 15599850 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Pseudomonas aeruginosa # 1 327 1 338 340 145 29.0 1e-34 MTQQIILLTNTGSPRTADEEDVRRYLQEFLTDGDIISVPYLMRQLLVRGIIVPRRTHFSS ERYRRLLALSDGVMPLTAEMQRLAEQVAQLTQLPTLYTPRYAQTSRAQWGERIAQLVGTD DVEVLLLPLFPQYTRSNAGSAITYFSDLPKPTGGHYKTSVLTPWGIDPHYIQQLSEVLQR HVDTSDSTYHYIASYHSIPEAHLKYDQTHGWDYHAQCVDTLQALTHRLGVPEEQVHLTFH SAMGHGRWLQPTLVNVLQEFAAQGVRRIVLFSPSFVADCLETKLDLQLEARDLFLAAGGE ELIYVPCLSTHPDSGALIASLVERVQRQR >gi|228306828|gb|ACLR01000226.1| GENE 50 58747 - 61383 3154 878 aa, chain - ## HITS:1 COG:cirA KEGG:ns NR:ns ## COG: cirA COG4771 # Protein_GI_number: 16130093 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Escherichia coli K12 # 123 715 25 560 663 96 25.0 3e-19 MQYSKLPIRAMSALLATLCSLSMAVAAPAALTAERTLPIVSTHADAHITGHVVDASTGKH IAGATIIIQQYNVSVTTDASGHYSFRNQKPGKLTLTMLADGYLTQVKEVTLKKGETLEVN FDAVLDDTQLEEVVVTANRQRTLRRYAPTLVSVIDSKSFQLNNAVNLAGGLSFKPGIRVE NDCQNCGFNQVRINGLDGRYSQILIDSRPVFSALAGVYGLEQLPANMIDRVEVVRGGGSA LYGSSAIAGVVNVITKEPTTNSFSLSENFSLIGGKKPDNTIAFNGTILSPDREMGAMIFG QHRTRTGWDANGDGFSEIGQLESRALGTHLFFRINPYNKITAEIHSIQEKRRGGDHFERP EHVVAVAESVGHSILSGNLRYDAHTADYKHNFQLYASGQRIVRNSYYGGIDEENVADDKH ATPKEAYGDNYGLTHGNVAMGGAQYTYKTDRLFFMPGNILVGAEYLYDHLNDEMPILKYQ KLPDGTSRAPGLDQRIHNLSQIAQIEWTNKVFTLLLGGRLDEHSAIRTDKGAIKPIFTPR ATLRYNPFTWMNLRASYAQGFRAPQTFDEDLHVGVVSGEAQKVVNVKGLKPEYSHSFNLS NDMYFSHGAMQANLLLEGFFTRLQGAFNTRPIEEREGFTLFERYNASDASVYGANIEGKV AYKRFTVQAGFTIAKSLWDEAESTGVERSLIKGENEKAPSDINTLENNGPEKADGFLTDG DGNFVSFELKSRNFMRTPMTYGYLTLTYNPVSTLNLTATCNYTGSMFAPHVIEYGAESAV LDRDLVAAGKREAGAEDKSGAAPKWGRIEKTPSFFDLGARISYDFDIFTSSSLQLFLGAN NLLNSFQNDFDLGGGRDSGYIYGPMQPRTVYMGMTMKF >gi|228306828|gb|ACLR01000226.1| GENE 51 61611 - 62225 573 204 aa, chain - ## HITS:1 COG:TM1713 KEGG:ns NR:ns ## COG: TM1713 COG1739 # Protein_GI_number: 15644460 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 5 170 3 166 191 129 39.0 3e-30 MKDFYHTIQSPAIAEQNIQRSRFIGYCYPVSSAEEALERISELRKEHYSATHVCWAYSIY GDEANETRSNDDGEPSGTAGKPILGRLISHDLTNVAVAAVRYFGGVKLGTSGLIDAYRST TELVLDKATVREVILYSSVTLSFQMDLMGPVMLLVKNHGAEIVAQDYTSQYHLTVQLRQG DMPSFVAAAGEIYGVTLQEEGIAE >gi|228306828|gb|ACLR01000226.1| GENE 52 62244 - 63653 1344 469 aa, chain - ## HITS:1 COG:no KEGG:PG1035 NR:ns ## KEGG: PG1035 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 23 462 68 486 496 232 35.0 2e-59 MKTRSLILSLLILISSAVTISAQSVPASLSASLSASPGKLSQPYTPTGQQVRLVAYHPAS GEGSGAVTLTFPIAAGEKLYSYTTSIQEAQPVATAQYAGTTVTVPNAQLECGYFTAQPSQ IMMTRVYYWIFDYSRVSLRDLALTADYDAAEPCQQVTLTLSRPLPPISYRTLQGASMQAD RGLVVRYQDIVYKEETHAFTAEQKEELLPETNGGAWHLIAPLSDTSFAIIGDRFTKGVAE QYGLPIESPVLQAHRVELHARYRLVSSGQSQAADSTASNAGQLPSSLSAPATVEIDLVAN EPAAVLYQIIIAEGATISKDAPVVMQFNGRQAQYTFDKMGTYTLYGSVSDRTASCTATSQ PVVVTVQSSRLEVPNVFTPFSSPGVNDLFQVVHQSLISFEAHIYDAWGGLIYSWSNPNGG WDGTCRGKPVPSGVYYYVITAEGADGVQYHKSGDVNILESDYSQQPNFN >gi|228306828|gb|ACLR01000226.1| GENE 53 63692 - 66685 2647 997 aa, chain - ## HITS:1 COG:no KEGG:BDI_1187 NR:ns ## KEGG: BDI_1187 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 7 996 4 959 959 266 26.0 2e-69 MASNDSFLSQVVSRMRSSEAPLRDQLVVVPTKRAATFLQRELVAQLQDKPATILPRIVTI DEWITEMSGRVILDNTALISILYEVYATYLANQKLGQVETDQMLSLSQTERMLRDFQDMD LALADVEMLLINLENLDDLDSYAYLDEEEREAIKEFWRGLSDQDLDSPQGGYRHFATVWR DIYQLFNVRLADLKVAYRAGAYRIVAEDTFTSDDLLRALRRYSGSAVSLVNFVGLYNLTP AERAIIKKLQSADADALQVQLYWQRVSIDAEGDFNEHLYNTIDKNAKLLGGVVLDEDFTR KYAPEVHLLSLNSTIQQPQVVNDLIAEITQEDDTALEELRIAIVLNDEKTLIPLMNSLKQ PACTSLNVTMGYPLQYTSVATWIRRYLNIYGLVSSSETRVERVKLTCSRLKLWLTAPLTR KLFGDLTTALMDRIALHHYAITASELRTIIEEVAGDADEAVRQRLLDLLTPSLTGVGLLT RIGQLLELLKGLTTATDEETEEATDDDESIDHVILSEALDQIVRYVTQVSNLLQSSEGIH HLLNAPKPVAYLLEQLMAVGSIPFEGAPLEGLQVMGFLETRTLTFDYVIMLNVQEGDLPK SSHTTTLIPDMLRSAFDMTTYRTEDDTNAYHFYRLIQGAKRVYLLQDTRPKSISSMEPSR YVDQIRYLTNLSLDESTYADSLDARNEQEQTVAKTDEEVHRYMEQIASGDKTFSPSDLIT YYNCAYQFYLKKIKGIGEPRQEPGVVTQIELGSMVHAYLEWFYKGLKKTSEVSDLEHTVS RDKLQELYKKIVSDKSAPDEILLTDLERYISKAIEIDKRLLQAGHSLQLLASETKMTNLC FEWTDDNGQNHTIHLTGQPDRVDIIDGKDYRIVDYKTGAIKKPKTVEELDTDTLDAWRKM ASNCKLGGYILQSCLYAMLYAQLAEEGISKIQPTLYSLAPAIPADEGAISFKETVALDEL KKLVTHYLNELVALKFDQTKVLDVCKYCDYKTICGRK >gi|228306828|gb|ACLR01000226.1| GENE 54 66675 - 67364 599 229 aa, chain - ## HITS:1 COG:no KEGG:Cthe_2176 NR:ns ## KEGG: Cthe_2176 # Name: not_defined # Def: abortive infection protein # Organism: C.thermocellum # Pathway: not_defined # 112 220 133 239 292 63 33.0 7e-09 MLVLLLLFTLILFVLAYPLLPITWAGIVAFGGGALLSSWTYLWGYRWLYHQPAPQEPSEL LALSLEPLKVFWKGVKLPRFFLYTILAIGIYLLLSWGNEALVSVWPEGWGGTWLRNWSKA SQEAQATLIEGENLWVLFLTVGVLTPIAEELFFRGALMGWMMLRRFPRWIVILLPALLFA VMHLNPVGMLPIFFLALLLGYLRWATGSLWSSVGLHICNNLLVLGVYGF >gi|228306828|gb|ACLR01000226.1| GENE 55 67364 - 68041 771 225 aa, chain - ## HITS:1 COG:no KEGG:BDI_0816 NR:ns ## KEGG: BDI_0816 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 12 220 9 217 224 86 23.0 9e-16 MRSPKKWWSGLLLLLLTSVIPLQAQRSQLKPLEVRIGGGGGVSGSMLDIVPRVEMLPHLG AMGYVAVLLTNQNYTGMTMRLSYEQRGWREEYMKPIAYNFARDMDFIDLTLMAHLYYPFG NFQLGLEVGPNVGYIIRDVSSPTPSEETRAVVKRRHVYPLFSKFSWGLKGGPILSLDIAE KHRITLSGHFYYGLSDLFATTVRDDYGRAGELGVTMGLGYYFRVL >gi|228306828|gb|ACLR01000226.1| GENE 56 68051 - 69574 1740 507 aa, chain - ## HITS:1 COG:PM0903_2 KEGG:ns NR:ns ## COG: PM0903_2 COG1388 # Protein_GI_number: 15602768 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Pasteurella multocida # 19 134 35 168 172 63 31.0 6e-10 MKQILQRILLLCVSLLLVTTTLMSQAPLRHVVKKLETVYAISKRYGVSEEEIYRLNEGSQ WGIREGQTLLIPQRKPDTIYVEASTVAPAEPGIHVVQSGETLFGISRKYGLTMGQLLELN PQKHDAQIAVGERIVVASGAKLKKEPTPLSGTQLEQVRVALILPLRESGQPSRYLHFYEG ALLAIERLQRQGISIDLQVDAAVNRSALEQLLKAKEGQQYDLIIGGDSEQSVELLSQRAK EQKAVYLSPFVWQSGKGQLYDHFFQLNPAQYRVTERLQQAFARRYAGYEVLLVRCGEGDQ ADKFKAIESACREAGISVQSRSLRELTIGQWPRQSGKKCVILLNSSKKADLTAVLDVMRD ARLSTSDYQLFGYPQWQTYGKEIDERLREVRATIFSTFYWDKELSESQRVREAYKHWYGR DIEEGYPSYALLGYDVVRYFIAAISSYGRGFQQFQHQLPKDGLQSGFLFAPAITGRSSGR GGYTNLNLFFITYSPRGEQRQQIPLAE >gi|228306828|gb|ACLR01000226.1| GENE 57 69909 - 71054 1029 381 aa, chain - ## HITS:1 COG:CAC1795 KEGG:ns NR:ns ## COG: CAC1795 COG0743 # Protein_GI_number: 15895071 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Clostridium acetobutylicum # 1 381 1 371 385 335 46.0 1e-91 MRRIALFGSTGSIGTQALEVISFHPELLTVYALTTHRNVPLLVEQAEKYHPAVVVVADEK AATEQAPLLKRLTCTVLVGAEGLCELAQHSDYDVMLSALVGFAGLRPTLLAIESGHEIAL ANKETLVVAGQLIMSSAQEHGVRILPVDSEHSAIYQCLIGEETPLERIWLTASGGPFWQM PLDELSQVTVADALHHPRWSMGAKVTIDSATMMNKGFEMMEACHLFAVSADQISILIHPE SVVHSMVQFADGSVKAQLAVPDMRLPISLALHGGVREPLPIARQPFVGTTLHFEEPDAAH FPCLGLAFEAFRQGGNIPCLLNAANEVAVRAFLDERIGFTEIARLIEPIMTAIPYDAAPT LDALLHYHDVATALASEQLSR >gi|228306828|gb|ACLR01000226.1| GENE 58 71086 - 71631 600 181 aa, chain - ## HITS:1 COG:PM1296 KEGG:ns NR:ns ## COG: PM1296 COG0806 # Protein_GI_number: 15603161 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Pasteurella multocida # 15 170 12 170 178 65 30.0 6e-11 MSSTTAFTVPELTPIGHLGKPHGVRGELTAYLTIELETLCSDPSSEAFYLFAEIDALPVP YQLLSYRSKGDSYLLTLAHVADRSIAEKMTGWRLFVPTELLAESEVAYSWDHFIGFRVIT PEGEAVGTILEINDQTENILLTIESSDGTQRLIPIHEELVETIDPESKTIQLHIPQGLLD L >gi|228306828|gb|ACLR01000226.1| GENE 59 71624 - 72934 1384 436 aa, chain - ## HITS:1 COG:TP0029 KEGG:ns NR:ns ## COG: TP0029 COG0766 # Protein_GI_number: 15639023 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Treponema pallidum # 1 431 1 421 425 373 47.0 1e-103 MASYIIEGGHRLQGEVTIQGAKNEALQVIAATLLTSEEVILENVPDILDVNNLIKLVELL GVEVTRLSHDSYRFRAQEIDLDFVDSPQFLHESKILRGSVLLVGPLVGRCRHAVFPKPGG DQIGRRRLDTHLIGIATLGAECEYDQERRAFRIEVPHLRGAYMHLEEASVTGTANVIMSA VLADGKTTIYNAACEPYIQQLCRMLVSMGARISGIGSNLLTIEGVERLHGTTHRILPDMI EVGSFIGIAAMTQSELTLKNVGLPDLGLIPQMFRKLGIEIIERGDDLIIPARESYEIETF MDGSILTIADAPWPGLTPDLLSVFLVVATQAKGTVLIHQKMFESRLFFVDKLIDMGAQII LCDPHRAVVVGKDHQTRLRPAVMASPDIRAGIALLIAALSADGTSVVNNAEQIDRGYQHL HERLNALGAHIERRDE >gi|228306828|gb|ACLR01000226.1| GENE 60 72977 - 73663 686 228 aa, chain - ## HITS:1 COG:no KEGG:PG1367 NR:ns ## KEGG: PG1367 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 12 184 5 177 200 205 57.0 1e-51 MTDTIQTIHKKSYHEVIPLPEYGHHIQHMVDHCLTIEDRDERTRCAHAIVQAMAIIQPEQ AKKSEDHKVLWDHLAVMSHFALDIDYPVEPIHEEALRGAPESLSYPEDDIIYRHYGHLIQ ELIKKACEMPEGDERKALALSIANRMKQAYILWNKRAVDDYTIFKDLYELSGGKLVLTEE EHQLDATARQIPQGRGSNRSRRQYKRPARGNNSRGGSHRGGRSNRSRR >gi|228306828|gb|ACLR01000226.1| GENE 61 73684 - 75051 1372 455 aa, chain - ## HITS:1 COG:BH3343 KEGG:ns NR:ns ## COG: BH3343 COG0166 # Protein_GI_number: 15615905 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Bacillus halodurans # 24 453 16 449 450 450 50.0 1e-126 MKTAASLIQIDTTHAQAHLSAEAIRQAEQDALVAIQTLHTGSGAGSDFLGWLTLPEETIE RNLCKQVKTVADKLRQECLYIICIGIGGSYLGGKAVIEALGDHFSTHRQPELGHPQVLFA GNNISSDYLHDLMDLVVDKPFGIVNISKSGTTTEPAIAFRMLSQYLVARDGQEVSKRRIV AITDKKRGALRRLADEQGYDTFVIPDNVGGRFSVLTPVGLLPIALAGFDIEALLQGASDT ALLYRSTEHPLETPAVQYAVTRQAAYRERAVSEVLVAFEPRLSALGQWWMQLFGESEGKE GKGLLPLSLTYTTDLHSMGQWIQQGPHNILETMIVVDTPRDTITIPTDEQNLDGLNYLAG ETMHHVNEQAHLGTLLAHEDGGVPVLQLQLPQIDARTIGAFIYTMEYAVAISGYMMGINP FDQPGVEDYKRNMFALLAKPGSESETKAMRQRLNK >gi|228306828|gb|ACLR01000226.1| GENE 62 75088 - 76095 1054 335 aa, chain - ## HITS:1 COG:BS_gpsA KEGG:ns NR:ns ## COG: BS_gpsA COG0240 # Protein_GI_number: 16079340 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Bacillus subtilis # 5 330 3 324 345 171 32.0 3e-42 MDIGRIGILGSGSWATALAKISLESTPEINWYVRRDDQVQRFKATGHNPDYLSSAAFDTD RITFYTEGSINPFFRNSDTIILVTPSPYIKHYLKKVKRSSMRGKLVINAVKGIVPDENLL VSEFLIQEFSLPKEQIGVVSGPCHAEEVAQERRSYLTTGSYSDELAHLMADTLSCDYITC TTSDDVVGIEFASVLKNIYAIAAGICNGLNYGDNFQSVLISNAIAEMNSFVNTVHLLNHR VITNSVYLGDLLVTAYSNYSRNRTFGTMIGKGYSVKAAQVEMEMVAEGYYGAKCVRELNT TRYRVNMPIMDAVYEILYNKQSAKETIERLSLKFR >gi|228306828|gb|ACLR01000226.1| GENE 63 76157 - 77896 2288 579 aa, chain - ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 7 501 10 497 499 491 51.0 1e-138 MDLHLLELSDQEIARRNSLDEIRQMGINPYPAAEYVVTAHAQEIQAQYQDDAPRMEVSIA GRVMSRRIMGKASFMELQDASGRIQVYVTRDDLCPGEDKDLYNKLFKKLLDIGDIVGVKG FVFRTQTGEISVHAEELTLLSKALRPLPIVKAKDDQVFDGFTDPELRYRRRYVDLIVNEE VKGIFMKRTKIFQSMRNFFNSRGYLEVDTPVLQSIPGGAAARPFVTHHNALDIPLYLRIA NELYLKRLIVGGFEGVYEFSRNFRNEGMDRTHNPEFTCMEIYVAYKDYRWMMQMTEQMIE HICQEVLGSTTIQVGEHTIEFKPPYRRLTMIDAIQEYGGVNIDGMDEAELRKVCQAKGVE IDETMGVGKLIDELFGAVAEPNLVQPTFIIDYPKAMSPLTKEHRDRSDLTERFELFVNGK ELANAYSELNDPIDQRHRFEDQLRLSERGDDEAMYIDHDFLRALEFGMPPTSGMGIGMDR LVMLLTGQESIQEVLLFPQMRPEIQPKRDKEEAYEAVGIDKTWVPLLQKAGYLTVADLAG KAPGKVMQQMMDINKKYKLGLQIPALEEISKWVGEESTK >gi|228306828|gb|ACLR01000226.1| GENE 64 78404 - 78754 394 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469589|ref|ZP_04054581.1| ## NR: gi|228469589|ref|ZP_04054581.1| transposase Orf2 [Porphyromonas uenonis 60-3] # 1 116 89 204 204 207 99.0 2e-52 MAERLNGIIKNDWLYNFEDKPIEEVREILSQTIALYNTARPHRALNKKTPMQMLIPDYPN PLTTQPSKKQISKNNSPTAPSLKAPSPCRLTPNKELSLCTSAVKTTTSRVPQQEQN Prediction of potential genes in microbial genomes Time: Fri May 27 10:27:49 2011 Seq name: gi|228306824|gb|ACLR01000227.1| Porphyromonas uenonis 60-3 deg1118640599539, whole genome shotgun sequence Length of sequence - 517 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 99 - 516 137 ## PG1710 ISPg5, transposase Orf2 Predicted protein(s) >gi|228306824|gb|ACLR01000227.1| GENE 1 99 - 516 137 139 aa, chain + ## HITS:1 COG:no KEGG:PG1710 NR:ns ## KEGG: PG1710 # Name: not_defined # Def: ISPg5, transposase Orf2 # Organism: P.gingivalis # Pathway: not_defined # 23 139 2 122 312 63 33.0 3e-09 MKQLESAQVRDQKLSITYLCQQLEVSRKGYYKHTFTEQDEDVKVASVLHYCQYVRSWLPR AGVDTLQECTNKYFKGTFQVGRDWLYKVLGANDMLLRSRRRKRPPQTTKGVVNHGFQDHL NTTPKYIATDHCRLTVSDI Prediction of potential genes in microbial genomes Time: Fri May 27 10:27:52 2011 Seq name: gi|228306822|gb|ACLR01000228.1| Porphyromonas uenonis 60-3 deg1118640599745, whole genome shotgun sequence Length of sequence - 613 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 210 240 ## COG2987 Urocanate hydratase - Prom 427 - 486 4.4 Predicted protein(s) >gi|228306822|gb|ACLR01000228.1| GENE 1 3 - 210 240 69 aa, chain - ## HITS:1 COG:SPy2082 KEGG:ns NR:ns ## COG: SPy2082 COG2987 # Protein_GI_number: 15675840 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Streptococcus pyogenes M1 GAS # 9 69 17 77 676 92 67.0 1e-19 MKRTCKFTLDATLPKYPTFEEGIRRAPDRGYSLTPAQTRVALQNALRYVPKELHAELAPE FLKELKERG Prediction of potential genes in microbial genomes Time: Fri May 27 10:27:52 2011 Seq name: gi|228306818|gb|ACLR01000229.1| Porphyromonas uenonis 60-3 ctg1118640599501, whole genome shotgun sequence Length of sequence - 1253 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 428 416 ## gi|228469490|ref|ZP_04054492.1| hypothetical protein PORUE0001_1918 2 1 Op 2 . - CDS 464 - 1252 678 ## gi|228471391|ref|ZP_04056189.1| conserved hypothetical protein Predicted protein(s) >gi|228306818|gb|ACLR01000229.1| GENE 1 2 - 428 416 142 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469490|ref|ZP_04054492.1| ## NR: gi|228469490|ref|ZP_04054492.1| hypothetical protein PORUE0001_1918 [Porphyromonas uenonis 60-3] # 1 142 1 142 229 228 99.0 8e-59 MKQIIKTFSLVLVSLSALLFASSCKDDLKPQEQEVDFSVSCTPPQAQIEREGQMVTTQLL ITEQEVECPRPTKYSVSFAYDETVGTLLFLGKSVQSGASIPLASLTNLSLTYQAKELVGN KVKVTVTNDAPKAVSKEATWTV >gi|228306818|gb|ACLR01000229.1| GENE 2 464 - 1252 678 262 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471391|ref|ZP_04056189.1| ## NR: gi|228471391|ref|ZP_04056189.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 262 1 262 262 448 100.0 1e-124 GADNLGAVVTGSKLSVSAVPAEGWEVKIITANGKDITTDKSFVVTSNTTVKVVFKRLPPK TYTVTLVKEGDGKVAISGADNLGAVVTGAKLTVSAEPADGWEVKSITANGKDITTEKSFV VTENTMVRVIFEEKALEICSYTIGLLKEGEGKVVVAPMKPVKPASLYGSGVPTIEIDPFE IDPSRINHVPCGVEVTLIATPADGWKLVSLEADGWDPLFGKSFSINRNTTVRVTFTKKAP SPADDVSVPVVPKSSSTSRPSK Prediction of potential genes in microbial genomes Time: Fri May 27 10:28:09 2011 Seq name: gi|228306815|gb|ACLR01000230.1| Porphyromonas uenonis 60-3 deg1118640599509, whole genome shotgun sequence Length of sequence - 508 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 507 448 ## PG1476 conjugative transposon protein TraM Predicted protein(s) >gi|228306815|gb|ACLR01000230.1| GENE 1 3 - 507 448 168 aa, chain + ## HITS:1 COG:no KEGG:PG1476 NR:ns ## KEGG: PG1476 # Name: not_defined # Def: conjugative transposon protein TraM # Organism: P.gingivalis # Pathway: not_defined # 25 165 293 433 453 107 34.0 1e-22 DASSQQAHEALLQNRFTTSVGSFRSEAVAKNTIRAIIDETKTIKLGDEIKMRLMEDIQIG TVVVPKGTTIVAKSNLTNNRLQLKVTSIEYRERIIGVDLSAFDLNGQEGLYVPVTAEAVG LKALGEGLAETATGGISIQQSGKDQILANVSNGLIRAGGNYMRSKASE Prediction of potential genes in microbial genomes Time: Fri May 27 10:28:12 2011 Seq name: gi|228306812|gb|ACLR01000231.1| Porphyromonas uenonis 60-3 ctg1118640599492, whole genome shotgun sequence Length of sequence - 1151 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 1088 1101 ## PG1481 conjugative transposon protein TraG Predicted protein(s) >gi|228306812|gb|ACLR01000231.1| GENE 1 2 - 1088 1101 362 aa, chain - ## HITS:1 COG:no KEGG:PG1481 NR:ns ## KEGG: PG1481 # Name: not_defined # Def: conjugative transposon protein TraG # Organism: P.gingivalis # Pathway: not_defined # 1 356 481 836 841 525 71.0 1e-147 MCQFIHAKTKGEDGIYYTYTEENPIAFNPFYTDDYVFDIEKKESLATLILTLWKSGDEKV TKTEVSELFASIGAYINKITADRSIVPSFNTYYEFMLDEYRQELLSREIKVTREDFNIDN LLTTLKHYYRGGEYDYLLNSTDNIDLLSKRFVVFEIDAIKDNKILFPVVTIIIMESFINK MRRLKDERKMIVIEEAWKAISSANMAEFIKYLYKTVRKHFGEAVVVTQDPDDILRSPVVR ESIINNSDCKILLDQRKYMNKFDAIQEALGLTNKEKEQILSINQNNDPNRLYKEVWFGLG GMVSAVYATEVSLEEYFAYTTEATEKVAVQRLAAQLGGNIELAIRQMAQAQREKEQIIKR RS Prediction of potential genes in microbial genomes Time: Fri May 27 10:28:27 2011 Seq name: gi|228306770|gb|ACLR01000232.1| Porphyromonas uenonis 60-3 ctg1118640599664, whole genome shotgun sequence Length of sequence - 42668 bp Number of predicted genes - 38, with homology - 35 Number of transcription units - 21, operones - 8 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 148 - 207 3.0 1 1 Tu 1 . + CDS 375 - 3215 2447 ## PGN_1416 probable lysyl endopeptidase precursor 2 2 Op 1 . + CDS 3326 - 4783 1206 ## gi|228471424|ref|ZP_04056219.1| conserved hypothetical protein 3 2 Op 2 . + CDS 4882 - 6501 2168 ## PGN_0477 hypothetical protein 4 2 Op 3 . + CDS 6524 - 7237 865 ## SP_0558 hypothetical protein 5 2 Op 4 . + CDS 7325 - 7777 727 ## PGN_0176 hypothetical protein + Term 7790 - 7840 12.2 + Prom 7786 - 7845 3.0 6 3 Tu 1 . + CDS 7865 - 8530 966 ## COG0325 Predicted enzyme with a TIM-barrel fold + Term 8569 - 8621 8.6 - Term 8630 - 8670 8.1 7 4 Tu 1 . - CDS 8697 - 10973 2624 ## COG0281 Malic enzyme 8 5 Op 1 . + CDS 11664 - 12173 319 ## gi|228471407|ref|ZP_04056202.1| hypothetical protein PORUE0001_0738 9 5 Op 2 . + CDS 12121 - 12522 76 ## PG1534 hypothetical protein 10 5 Op 3 . + CDS 12519 - 14564 493 ## PG1533 toprim domain-containing protein 11 5 Op 4 . + CDS 14552 - 14860 259 ## PG0850 excisionase family DNA-binding protein + Prom 15025 - 15084 2.2 12 6 Tu 1 . + CDS 15242 - 15436 130 ## gi|228471398|ref|ZP_04056193.1| hypothetical protein PORUE0001_0742 + Term 15483 - 15532 0.1 + Prom 15521 - 15580 5.1 13 7 Op 1 . + CDS 15730 - 15948 150 ## gi|228471408|ref|ZP_04056203.1| hypothetical protein PORUE0001_0744 14 7 Op 2 . + CDS 16012 - 16884 125 ## ECA1597 hypothetical protein 15 7 Op 3 . + CDS 16895 - 17254 64 ## gi|228471433|ref|ZP_04056228.1| conserved hypothetical protein - Term 18947 - 18990 -0.2 16 8 Op 1 . - CDS 19138 - 19419 240 ## PG1490 TraG family protein 17 8 Op 2 . - CDS 19492 - 20589 381 ## PG1178 hypothetical protein - Term 20698 - 20729 -0.6 18 9 Op 1 . - CDS 20751 - 21536 621 ## PG1179 hypothetical protein 19 9 Op 2 35/0.000 - CDS 21558 - 23282 207 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 20 9 Op 3 . - CDS 23275 - 25053 263 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 21 9 Op 4 . - CDS 25053 - 27443 1227 ## COG1033 Predicted exporters of the RND superfamily - Term 27737 - 27772 0.1 22 10 Tu 1 . - CDS 27814 - 28242 155 ## PGN_0945 putative TetR family transcriptional regulator - Prom 28452 - 28511 4.0 - Term 28777 - 28811 -0.5 23 11 Op 1 . - CDS 28829 - 29113 90 ## 24 11 Op 2 . - CDS 29145 - 29924 538 ## PRU_1059 hypothetical protein 25 11 Op 3 6/0.000 - CDS 29939 - 31387 401 ## COG1479 Uncharacterized conserved protein - Prom 31547 - 31606 3.3 - Term 31513 - 31546 0.0 26 11 Op 4 . - CDS 31791 - 32789 217 ## COG1479 Uncharacterized conserved protein - Prom 32829 - 32888 3.6 27 12 Tu 1 . - CDS 33632 - 34018 170 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 28 13 Op 1 . - CDS 34183 - 34734 426 ## gi|228471422|ref|ZP_04056217.1| hypothetical protein PORUE0001_0759 29 13 Op 2 . - CDS 34740 - 35651 357 ## BT_2509 putative transcriptional regulator - Prom 35754 - 35813 2.5 30 14 Op 1 . - CDS 35863 - 36222 283 ## 31 14 Op 2 . - CDS 36215 - 37504 277 ## COG0587 DNA polymerase III, alpha subunit - Prom 37542 - 37601 1.7 32 15 Tu 1 . - CDS 37760 - 38254 141 ## 33 16 Tu 1 . + CDS 38253 - 39473 1155 ## Dalk_2552 transposase IS4 family protein 34 17 Tu 1 . + CDS 39648 - 40133 273 ## Mmc1_1526 transposase, IS4 family protein + Term 40304 - 40350 6.5 - Term 40028 - 40062 -0.5 35 18 Tu 1 . - CDS 40206 - 41315 706 ## PG1490 TraG family protein 36 19 Tu 1 . + CDS 41184 - 41504 213 ## PG1479 conjugative transposon protein TraJ + Term 41637 - 41674 4.0 37 20 Tu 1 . + CDS 41867 - 42088 259 ## PG1478 conjugative transposon protein TraK 38 21 Tu 1 . + CDS 42261 - 42666 264 ## PG1475 conjugative transposon protein TraN Predicted protein(s) >gi|228306770|gb|ACLR01000232.1| GENE 1 375 - 3215 2447 946 aa, chain + ## HITS:1 COG:no KEGG:PGN_1416 NR:ns ## KEGG: PGN_1416 # Name: not_defined # Def: probable lysyl endopeptidase precursor # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 942 1 938 940 504 33.0 1e-140 MNHLTNRLILRILISLCLLAVASHGSAQQSFGGRPQLLGEGTLRTAAAGISLAPDFNPQD LIRKEMWQGGTLQYKPYNIGKVVPCSIDFATSAELISSTVETDIYRLEIEMEQTPVGINL YYSDFFIPQGGRLYIYTPGGDQLLGAYTHETHPRHGAFASEPLSGNKLILDYEAPHGSAM PSIQISGVGYLYRSILKAKEERNLGQEDASDPARNKYCQLNINCPEGDEWQEQKSSSVIY IPVFANGKITLCSGNLINNIEGDFKPYILTAAHCSGEDADKNDPKTGEFKGDFDIDQSKM DQWLFGFHYEKPRCNNSDYAQPAKTLVGAFIRTYTSPYKFSDGMLLELKEDIPLDYRVYY SGWNATDQTWQSGAGIHHPAGDVTKLCLYNKGMTITPWDGAGVGDHYSLNVHTGNTEGGS SGSPLYNEHKEQIGTLTGGAVTPCAQDGYYGRLSSHFNKYKDKGKLYHMDMYLDPKNTGA LKVAGTWREGYKPFAPIRELRGKLDLQDHLKVELEWDPVPAHAQGYPISYQIYRNGTPLH KQTETKYTDQLTPDLTAPGSISYAVEAVYDVNGKPVSTPVAHRTIYTGKLVKQLNPKVTP SNTGGVSLTWTPPLNAQIVSKIADRERMNLTKVDPLGARKLYQMRISEICLIDKFRLGRS PFDKPLYIHQINVIPTVNKGIQRLYLRQKVSNTIEEVRQFVSPTKEDQKWISIPLKKPFK IQSNENLEVGFRVRTGAPHAVFVDTNSKDKYMGIDGGLEAYYVMLPNFIGYQSTPFTDKG YMAIELVISDSPTLSGDTIRETFTRGPLPVPFPEVKGYVIYRNDEKVGETNPSTRTYQDA TGKEGDKYRIEVLYDAPAKLAIDKDLRGAQQPYLYPSIIRDMATLAEADEVRLLQIFDLS GQCLRTVSGDALHSAIDLTDLPEGSYVALIRTAQETFTQRVMIKRN >gi|228306770|gb|ACLR01000232.1| GENE 2 3326 - 4783 1206 485 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471424|ref|ZP_04056219.1| ## NR: gi|228471424|ref|ZP_04056219.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 1 485 1 485 485 509 100.0 1e-142 MMRLTRSISLLVIVALSSFMWSAAQVDWDDDVYYVPSQAAQQDSRSNNLWGDDKDQYDDL DELDAYNHRGKEYTGERGRSYSSSQQQKGVGKYSRRIMRFHNPATVYIYDSDNVDVYYNE DGTYGIYNYPDRYDYVADRYNPVGISINLWSPGWYPSWDYYYDYMWYSSWYPWYTNRYSY PYSWGGYGYWGPSIWYTNPWSWGGSYWYGYYPHYGGYGYGAGYNNGYWDGYYAGSYGIYD PYYGNYVKPSTYYSNGRLGSSYYDKGYSSNPRASRGNQGTLSGNARRGSLDASTNNRTEV ADRGNFWKDDRNRIYDNTQGRSARGSYDQSSSARRSSSEQYSLGSARSRRGSYFEDNSTV RQDRQLSSPSRSYDTGSARSRRGSYDSPRNSSWQSSSTSSSSSRSYDTGSARSRRGSYDS PSNSSWQSSSTSSSSSRSYDTGSARSRRGSYDTPSSRSTSSSSFGSSSSSSSSSSSSSGS ARGRR >gi|228306770|gb|ACLR01000232.1| GENE 3 4882 - 6501 2168 539 aa, chain + ## HITS:1 COG:no KEGG:PGN_0477 NR:ns ## KEGG: PGN_0477 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 9 539 17 554 554 305 37.0 3e-81 MLRHYFIPLISSALLLITGSYLSAQTHDNALRFSTETLDGTARYQAMGGAFGAVGADYGS LRQNPAGLGLFRSNEIQGTVSFGQNMDQATWYKEQYKKGRTAFGGNMSVVLATPLRGSGL SINFALGFYQRQSFARSFDISNHEITKFSLADYAAFITPKDIPSGDFFGKNTYGNLPAPW LAILGHRAGWTNRNREGFYESAFNYSDKGGILGPSNSQLRVNERGGIQDFDFTCGLNYSD RLYFGLGVKLSALDYRMNSYYGEDFIDKDYLELANELRTSGSGASISFGLIARVSDHLRL GAAIQTPTWYTLQDNYVAGAESRYSRAVDDKGKPLPEKEWTVKDETPSDAAWRYQLQTPT KIVLSGAFVGRLGMLSLDYELANYSGIQLKDTYGPFVNDNKLMKEYFTPMQSTLRLGGEV RFSPQFSLRAGGYWRQAPMKASFDSNPNQQSATIPVNEAGTVPHYEIVGMGYGVTGGLGW RFSPSSYVDLAVVYQGQQSLMYPFPTRYYGDNGEQLTTPQPIQLQKQRIYGVATFGFKF >gi|228306770|gb|ACLR01000232.1| GENE 4 6524 - 7237 865 237 aa, chain + ## HITS:1 COG:no KEGG:SP_0558 NR:ns ## KEGG: SP_0558 # Name: not_defined # Def: hypothetical protein # Organism: S.pneumoniae # Pathway: not_defined # 10 222 21 234 271 70 25.0 6e-11 MSLSSKAWDRFLNILLRSDMARVNRVEWLTDVLYPFLSITELEQLATEPPHRFLSVKVLN HIANQEIRRHTELLAIGSAGSSLTGCVGTWVGIPTELAQYSVNILLLIQKLAYLYGWDDF FTYGAVTTETRARFTFLMGSMLGIREADELLRSACTLYQGQVSITPMRYLGKESPIDKVI AEISKRLLILSAKGGITAWIGRKAPLIGVTLGATSSYLLVKPSLVRLKVLLRDLMQE >gi|228306770|gb|ACLR01000232.1| GENE 5 7325 - 7777 727 150 aa, chain + ## HITS:1 COG:no KEGG:PGN_0176 NR:ns ## KEGG: PGN_0176 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 141 1 141 147 160 53.0 1e-38 MANWFECKVTYEKMVDNGTPKRTSEGYLVQGDTYTEIEARLTEELSSFTSLGELIINTIK RIKLAELFLSDHPEDDRFYRCKVNFISLDETRGVEKRTAAAMIVQSDSLPNALKRLEKEM STTLSPYEIAAITETIIMDAWPIDFSKPNE >gi|228306770|gb|ACLR01000232.1| GENE 6 7865 - 8530 966 221 aa, chain + ## HITS:1 COG:CAC2121 KEGG:ns NR:ns ## COG: CAC2121 COG0325 # Protein_GI_number: 15895390 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Clostridium acetobutylicum # 2 221 3 218 221 158 40.0 8e-39 MIAERLAEIRSQIPAQVQLVAVSKFHPVESVREAYEAGQRLFGENRAQELAEKAPQLPED IQWHFIGTLQRNKVKYIVPYVSLIESVDSESLLQEIVKQANRFDRQLRILLQYKIAQEES KSGLDHAELLALVDHYLATPEWRERITICGLMGMATLTADKEQVRHEFDTLRALQTELRE RYPDISWDELSMGMSNDWPLAVEAGSTIVRIGTAIFGERQY >gi|228306770|gb|ACLR01000232.1| GENE 7 8697 - 10973 2624 758 aa, chain - ## HITS:1 COG:maeB_1 KEGG:ns NR:ns ## COG: maeB_1 COG0281 # Protein_GI_number: 16130388 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Escherichia coli K12 # 1 419 1 420 434 518 63.0 1e-146 MDKKLEAAARAYHALPQPGKIEVRPTKSHNTQQDLTLAYSPGVAVPCKDIETDPELAYDY TAKGNLVAVISNGTAVLGLGNIGAMAGKPVMEGKGLLFKIYAGIDVFDLEVDEKDPKKFV EIVRSLAPTFGGINLEDIKAPECFEIEEELKATLDIPVMHDDQHGTAIISAAGMLNALKI AGKKIEKVQIVVSGAGASAQSCTKLYIALGARRENIVMIDSKGVIRTDRPNLDERKAFFA TSREGIYTLADAIQGADLFLGLSQPGVLTPEMVQKMAPNPIVFALANPEPEIKYEDAKAA RPDVLMATGRSDYPNQINNVIGFPYIFRGALDVRATAINEEMKMAATMAIAGLAQEPVPD EVSSAYGHMPLHFGPDYFIPKPVDPRLITRVSMAVAQAAIRTGVARREITDWEAYEQSLI MRTGGMSHLLRRIHEAAQMSPKRMVYAAGENPLVLRAAAEVSHLGIAHPIVLGDPEVIKQ IAKEHDIDLSTIEVINQHDEQWKAKREEYAQRYTEQNWRKGGVLSEAKDKMFGPNYFGMM MVQCGDADSLITGIYSNYAYLSNVARDTVGIAPGHQHFATMHLVMMKSGPLFLADTLINQ NLKAETLVDIALLAAEKVRCFGIKPVIAMVSFSDFGSTDAESSVEARKAVEILHREHPHI VVDGEMQLQTALNYQRRDEEFPNNRIKGEPANVLIFPRLSAANACYQLLKHLDIAEDVIG PIQIGLAKPIYFADHDADVKDIVNITAMASLDSNSCFV >gi|228306770|gb|ACLR01000232.1| GENE 8 11664 - 12173 319 169 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471407|ref|ZP_04056202.1| ## NR: gi|228471407|ref|ZP_04056202.1| hypothetical protein PORUE0001_0738 [Porphyromonas uenonis 60-3] # 1 169 1 169 169 305 100.0 6e-82 MKETAKLYIVNPSLEDIIRSSNNLKSQAFIAEMDVSNFRKSMTLSSGQQLRTFLKIAQAA KKDVIFLMIDADVVEPITGPLSLQNDVHYTLTQEQFFKVLGSIYGSERQSILNALVREVV NYMMGSNLDLSKFISQAEDYLKCLKAGLQDESYGLQSDAIGNTSRDSVS >gi|228306770|gb|ACLR01000232.1| GENE 9 12121 - 12522 76 133 aa, chain + ## HITS:1 COG:no KEGG:PG1534 NR:ns ## KEGG: PG1534 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 10 119 10 119 129 90 38.0 1e-17 MDYNQTQLEILQEIQSLRSAIDKVSGFIAELKSDYEVLEEKIELNSSDVMRILGVSRASL ARWREANAVPFRYVSANHVVYPFKGLYIAVKTGRATFKGFRRIEAIQRLNAYKDGIIKGY LGENKPEMLFEEL >gi|228306770|gb|ACLR01000232.1| GENE 10 12519 - 14564 493 681 aa, chain + ## HITS:1 COG:no KEGG:PG1533 NR:ns ## KEGG: PG1533 # Name: not_defined # Def: toprim domain-containing protein # Organism: P.gingivalis # Pathway: not_defined # 2 673 3 678 682 814 58.0 0 MNIKEEILGRTNRGLDVFTYYMPMDFVPKRNFRNPFYEDKRASCNIYFDSKNDCYRMKDF GNELYSGDCFWFVAMVAGLDAKRDFRNILQMINRDLGLNLRVGQDSSISKMPSKSYNDKT MSKATVAPPKRYEFTPKSFGQRELLFWFRYGITEEVLHRFHVKALTCFKSINREGKPYSI YSNDEEPMFGYVMQGFIKVYRPHSSIRFLYGGEKVEDYVFGLEQLSSKGDVVYITGGEKD VMSLSAHGFNAICLNSETADIPKSLMELLSRRFRHIVILYDVDETGIRASFKVLQTFSEL SILRLELPLDGGKAQKDISDFFSMGRVAKDLKELLAKELNKLYANTLMMMKSCEIDYDNP PEASHPIVSVNGVPLGTQDNLFCITGGEGTGKSNYISAILSGVINEEALDPETTLGLRIA ANPRQLAVLHYDTEQSEAQLHKNLGRTLKRAGLNRVPLFFHSFYLASLSRQERLKLIRDS MDMLYHKYGGIQLVVIDGIADLIRSANDESESIAVVDELYRLAGIYNTCIICVLHFVPSG VKLRGHIGSELQRKAAGILSIETDDNPELSVVKALKVRDGSPLDVPMMLFGWDKELDMFT YRGEKSKAEKEKRKTVDLISVAKEILKEQKSIAYSDLVVSVMEEMDVKDRTAKKYIAYMR EQNILSQDSMGNYIKGKLCHT >gi|228306770|gb|ACLR01000232.1| GENE 11 14552 - 14860 259 102 aa, chain + ## HITS:1 COG:no KEGG:PG0850 NR:ns ## KEGG: PG0850 # Name: not_defined # Def: excisionase family DNA-binding protein # Organism: P.gingivalis # Pathway: not_defined # 1 102 1 102 102 147 77.0 1e-34 MSYLDYLTEDQWQKHLFDKLARVEEKLDHLLVLREQAIETVVKPPLKPEYLDIIDVSRLL KVEQKTIYNWVWAGKIPYLKANGRLLFLREEIDEMLKRREEW >gi|228306770|gb|ACLR01000232.1| GENE 12 15242 - 15436 130 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471398|ref|ZP_04056193.1| ## NR: gi|228471398|ref|ZP_04056193.1| hypothetical protein PORUE0001_0742 [Porphyromonas uenonis 60-3] # 1 64 1 64 64 94 100.0 2e-18 MKAFVDRDVIFDSDGQGSDIQDTSMGAWTIIFNLKETLEVKFTKQDQSDFNDFVAGLEMD DDNV >gi|228306770|gb|ACLR01000232.1| GENE 13 15730 - 15948 150 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471408|ref|ZP_04056203.1| ## NR: gi|228471408|ref|ZP_04056203.1| hypothetical protein PORUE0001_0744 [Porphyromonas uenonis 60-3] # 1 72 42 113 113 123 100.0 4e-27 MVIGSVVVPISELQAKAQFSITDDQIKLLNKGISKVRISTAPITHERTFSQDVIGKRLFK QFESVKKKTNEF >gi|228306770|gb|ACLR01000232.1| GENE 14 16012 - 16884 125 290 aa, chain + ## HITS:1 COG:no KEGG:ECA1597 NR:ns ## KEGG: ECA1597 # Name: not_defined # Def: hypothetical protein # Organism: E.carotovora # Pathway: not_defined # 4 180 15 201 347 81 33.0 3e-14 MHIDKLKNLIQSTHINFLFGSGLSCPYLTTLTNIEIWLTESNKIADETLRYLIQDILFIK YVKDVMKPCLPQYRTNKDSLTIVENAYENFLSIWNYVMSRRSSNLLNKQVNIFTTNIDPF VEEAAERLRIEFNNGFKGLLTPVLREESFSTIMAKVSPLYQNQSQIPVFNYLKIHGSINW MTTEDNEITYDSQLNCLNTIVQAIENYPKDYRCVELAEEELEKENEGKDEESQEALSFKL IEDKAKQCIEKGKFEVTDKMQAFREVYSKLVMVNPRKKQVSRNRVRPSLL >gi|228306770|gb|ACLR01000232.1| GENE 15 16895 - 17254 64 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471433|ref|ZP_04056228.1| ## NR: gi|228471433|ref|ZP_04056228.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 15 119 1 105 105 189 99.0 3e-47 MYSNALEKASTSLFVAGFSFADEHIAQITIRAAVANPTLQIVIFAYSENSKKDIATSLNK AGCTNNNNILILSPEDYKKSQDKQFIESFQSPDDFNKLERFDLKSINQYVFEPIKRGLF >gi|228306770|gb|ACLR01000232.1| GENE 16 19138 - 19419 240 93 aa, chain - ## HITS:1 COG:no KEGG:PG1490 NR:ns ## KEGG: PG1490 # Name: not_defined # Def: TraG family protein # Organism: P.gingivalis # Pathway: not_defined # 1 93 575 668 669 128 65.0 6e-29 MFVGAADKFDERIDQKIFHAEIVVDVAKVSAETKAYQPIPIIADFTNENGFDSLRETIEA NYRQVKQEVLSLVDSETARIKADPTLSLLLKES >gi|228306770|gb|ACLR01000232.1| GENE 17 19492 - 20589 381 365 aa, chain - ## HITS:1 COG:no KEGG:PG1178 NR:ns ## KEGG: PG1178 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 365 59 425 425 473 61.0 1e-132 MSSRTRIRGEIGKSFEGSSLFVSFNATYNALLKERTGFELREAYLDHRDDHWGFRLGRQL VIWGAADGVRITDLVSPMDMTEFLAQDYDDIRMPVNALRLFVFNDKMKLELLAVPTFEGY KLPTDAINPWCILPKDSPLPIAWEENGSHPSLHFANIEYGGKLSFTLPGVDFSLSALHTW NKMPVFTYRPTDTHIVVSPQYYRMGFFGGDISKPLGQLVLRGEAAFNVGKHFSYRPDASD QEQKGFNTVNYLVGIDWYAPKDWVVMAQFSSESILKYEDQIAQPHHNSLLTLNVSKKLLD NTLQLSNFTYFDLNHKGWFSRFTAAYSLNDFIQLSLGYDWFGGDEGVFSAYKNNSEVWAK AKYSF >gi|228306770|gb|ACLR01000232.1| GENE 18 20751 - 21536 621 261 aa, chain - ## HITS:1 COG:no KEGG:PG1179 NR:ns ## KEGG: PG1179 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 2 259 1 261 263 381 72.0 1e-104 MMKRIILASLVVWAFAATAMAQTGREIAQKVKDRPDGDTRQSELVMKLVNKRGAVRERKL ISYSIDVGAGKKDRKSIMFFLYPGDVKGTGFLTWDYDNPNKDDDRWLYLPAMKKTRRISG SSAKQDYFMGSDFTYDDMGSRNVDEDSHQLLGEETIGGHKCWKLEYTPKDKREIYSRKVA WIRQDCLIAVKVEYYDKMGKLHRRLELSDIVKVSGFWIAKKLHMTNVQTNHQTILEFKDP KFNTPMNEAQFSVSTLEKGRF >gi|228306770|gb|ACLR01000232.1| GENE 19 21558 - 23282 207 574 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 273 558 191 507 563 84 25 1e-15 MNKFFKQKYAMSEQGAKNLQKSIFSHTILNLTKMFPPIIGFVFLFQYLGSLEGIPAPVEL TLVDYIVIILVMLLVMFFVARWDYVRLYDNVYNESANSRIDIANRLKKLPLSYFGKRDVS DLSATMMSDLNLYEQIFSHSVPHIYATSISTVIISVMILDYNWQLGLAALWVIPVSLLLF SLSKRKQRNDVNAYVKTSRDVLDDLQEQIDQIQEIKSYNLEERTLNEFYHKMDGNTRNKV KMELSAGIATALAGMLMKLGIVSVAIVGANMLIAGQINILVYIAYLILTASIYVPIEGIL SFMAMIVTLDGVVARIKEIKTMPIQEGKQEMNPRDYSIDFKDVVFGYEDYTVINGVSFTA KQGEVTALIGASGSGKTTLTKLAARFWDIQQGKILLGGEDISQIDPETLLKNYAIVFQDV VLFNASIKDNIRIGKKGATDEEVTRVAKIARCDEFIDRMPDGIDTVIGENGERLSGGERQ RISIARALLKDAPIILMDEATASLDVENESLIQEALSELIKEKTVIVIAHRMRTIRGANK IVLLHQGKIEAMGTDAELRVQSATYRKMLEKSMG >gi|228306770|gb|ACLR01000232.1| GENE 20 23275 - 25053 263 592 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 345 565 2 226 245 105 32 3e-22 MSNTNKQKKPSVLKRSLHYAGKKRYMLPLAMVFSALSGILVLMPMVYIHKIVSGIILSGS VDGGTIRYYAILAASFAAAGMLLYFCALMVSHLFAFEVEANIIKLSVKKMMAKPLGFFAN RESGNLRKTIVDGAGETHTMLAHQLPDLAMTIVSPIVLLIFFFLFDWRLGLVSLVPMVIT VLLMATMATPKSKKLREEYYEGLANLSAESVEYVRGIPVVKTFAQSVESFDRFYSLIVKL KDFVVRWSMGFKNKMSLYEAISSSTAFFLVPVAIMMITSGADMREVLGNSVIYLLIGPVF GVFMMRSASMQNFIYFAELALDKIDTALDYEDLTYGEATAVGEGLEFRNVSFSYGKDKVL DNVSFKVNKGETVALVGASGGGKTTVARLAARFYDADEGDIFIGGISIKEYKKEALSQKV AFVFQMSKLFKMSLRENLLLGNPNASDEEIEQALVRAGAKEIVDNLEKGLDTVYGTKGTY FSGGEIQRLSIARAFLKNADFVILDEATAFADPENEHIIQASFKELSKDKTTLMIAHRLS TVVNADRILVMENGKIVESGTHNELLTLGGVYKKLWSEYQKAANWRIGGDNE >gi|228306770|gb|ACLR01000232.1| GENE 21 25053 - 27443 1227 796 aa, chain - ## HITS:1 COG:BB0252 KEGG:ns NR:ns ## COG: BB0252 COG1033 # Protein_GI_number: 15594597 # Func_class: R General function prediction only # Function: Predicted exporters of the RND superfamily # Organism: Borrelia burgdorferi # 58 760 41 730 767 116 21.0 2e-25 MKIERINNWFALRGKRMMRNRWVVLGGFILILAIGVSGLRYFKVSASWEDYFLEDDPMLV KTEEFKEIFGNDNFAAVLTRCDNSFTKDNLELIRELTNEMVDSLSYADKITSLTDIEFMM GGEDGIAIEQIVPDTIPTDPKQLEEIRRKAYMKPHVAERLISKDGTLSWIILKLRTFPED SVWNKGKNPVSPEVLTGNELDHIITKDKYKALHPKGTGLPYVTAMKMKWIGTEMPRVMGI ATLVSILILLLVTRSFRGVVVPLLTAISSIIVVYGVLGYVGMTIDSGMVMIPMLLVFAVS IAYNIHVYSYFKRRFLIHGLRKQAVEETVGEMGWPVLFSALTTFASLLSFLAIPMQPMRF IGIASSSCVMLSFLFSITLMPILLSFGKDGKPHPKVQETGGRWMDQKLESLGKSVLRHGT LILWLTGIISVVLIYQFTKIETAFDVERTMGRKIDYVNNLLEVGESELGSVYTYDVMIDF PEDGLAKSPTMLLQLDSLAQHAGGYKLTKRTTSVLNILKDLNQTLHDGNPSYYTIPHNPD EVAQLLLLYENAGGSEAEYWIDYDYRRLRLMVEMNSYDSGETERELNDIIAYAQRLFPNA AVTTVGSIPQFTVMMQYIARGQMVSFAISLLIIGILMMIVFGSVRIGLVGLIPNITPALV VGGLMGWLGYPLDMMTATIMPMILGLAVDDTIHFINHSHLEFDRKGNYRNAILRSFHTIG TPIVLTSVVICANFAVYTTSEGLSFVHMGILSVTGILSALLADLFVTPILIQKFRLFGKE TNTIERPKEQTNIIES >gi|228306770|gb|ACLR01000232.1| GENE 22 27814 - 28242 155 142 aa, chain - ## HITS:1 COG:no KEGG:PGN_0945 NR:ns ## KEGG: PGN_0945 # Name: not_defined # Def: putative TetR family transcriptional regulator # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 136 80 215 215 91 33.0 1e-17 MLENHNSDEKLSLEIFTSEEYYRQYMQEVMGVITRYRKELRLLFLDTRDTRFEDFWERWI DKSTITGIEYLERMKELYPGLHTNVSPFFIHFISSWWISMMREIVLHEELSSEDIECFIG EYIHFSIGGWKRLMKVDHQSVL >gi|228306770|gb|ACLR01000232.1| GENE 23 28829 - 29113 90 94 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLVCMVVAIHNLGRDEPTSDARGFLEAFYYKEVFVRDGLSIDPKYDYVSVENSCSSTQV SQGKACNGCWVRAGAFVLWTLCPTDFDFPERCFS >gi|228306770|gb|ACLR01000232.1| GENE 24 29145 - 29924 538 259 aa, chain - ## HITS:1 COG:no KEGG:PRU_1059 NR:ns ## KEGG: PRU_1059 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 13 253 25 269 270 196 40.0 8e-49 MQYLDLSDHPDNVIVCGDIHGDFETLVYDIDRRQITDATVIVAGDCGFGFCRIGYYDNLY KRKLHKKLAKANVLLLMLRGNHDDPIYFEKELIDYPYMKTLPDYTIVHTAGHNILCIGGA VSQDRNFRISMMSIQEKGKMPLWWTDEPFVFKLEELQVLEDESVRIDAVITHPAPSFCPP HTKGDFEYFCANDKNLAEDVRREREGLNKVYEWLSKYGHPLRYWYYGHYHQSATYEHNGT FFHLLNINELKELPTHNEL >gi|228306770|gb|ACLR01000232.1| GENE 25 29939 - 31387 401 482 aa, chain - ## HITS:1 COG:VC1766 KEGG:ns NR:ns ## COG: VC1766 COG1479 # Protein_GI_number: 15641769 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Vibrio cholerae # 37 461 196 660 663 87 26.0 6e-17 MDEALCAISAKLNNEIPDDDEKLRFARVVFADLTIFNSILPEHYQTVPDSLNRYFEAMNS TGKSLEQHEILKVELLRQPMENKPFYTRIWNAVATMDKKLITASEEDDKQRIERYREAIE CCKNGNCSAAFEYCDMAHATTSDDATTIALTPIKEYKFQNSRFDKEASIINFPELLLVTL SYMGYNISFRTDKLTETFKKEKPDATKFFETLLQVRLLLDLYVIRKSYSEQNRFDYRLLF TSTDKQRSNHDALEQYLAMMDVSTSYSRWLVAYLKYVSTCNQEPSSNNILIWLRYYDTQI HPWPTGNIDKALSYHIVRGNHYLFWRLEYLLWEKAESVFERLADNIKPVHDYRFRSNNSV EHLHPQEESNNDKWAKRDDEDIHPIHSFGNLALISQSFNSTQGNDPVHVKFARVEDQVNR YSLQSLKMYHMYLMARQSGGWSRKVSDEHKNMMLDLLADSYNIDANDRPWNCTSLNQSCD NQ >gi|228306770|gb|ACLR01000232.1| GENE 26 31791 - 32789 217 332 aa, chain - ## HITS:1 COG:PM0594 KEGG:ns NR:ns ## COG: PM0594 COG1479 # Protein_GI_number: 15602459 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pasteurella multocida # 5 128 101 222 433 66 34.0 6e-11 MKHSFFSHESTKHVSNAKYVIKTLVAREKEPQDFAKTMLEKLSFAVLILTGNNMDLAYTF FSAQNSRGVPLSDFDLLKAHHLRYIHIEEQAMHLAEKWNAMTQEQDGSGKENNLKQTLAV HLFRLRHWMRRNFADEDAYRHVQKEYQAAPVMIGIPPFGESFVFNEKIQGGSHFFAYAEN FVHSYEDFRQTKIVELLDRHLNWGAHARYASVIESLLFGYYLKFGRAYLTEALFCICSYM AKHRYSTPRATTASVREYAQNSEIIMMVEQSSSPTFFLAEALERIVPCVYEMQEDVRPVH SAFFNSLKNLFKAIPAVSDKEISKRIEDEFDW >gi|228306770|gb|ACLR01000232.1| GENE 27 33632 - 34018 170 128 aa, chain - ## HITS:1 COG:CAC0738 KEGG:ns NR:ns ## COG: CAC0738 COG0847 # Protein_GI_number: 15894025 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Clostridium acetobutylicum # 4 124 54 171 306 73 34.0 8e-14 MQCHGIQPEDTKNAPDFPQVWEEIERLYLDEFDTFVAHNAGFDRSCLEHSSELYHLHLPE LKWECSLQTARRIYDFGCNSLEYLCKQLDIPEGTHHRAGDDAEMCARLYLREIADAAQCE LIEQPTSK >gi|228306770|gb|ACLR01000232.1| GENE 28 34183 - 34734 426 183 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471422|ref|ZP_04056217.1| ## NR: gi|228471422|ref|ZP_04056217.1| hypothetical protein PORUE0001_0759 [Porphyromonas uenonis 60-3] # 1 183 1 183 183 313 100.0 2e-84 MASDIQKHINALCDIANKTPKASKAINMYKEALDFNESFVPNNENDEKDQKRLKGLLRDI RIEFGIYDGGVKTHPQLEGYIHRLQELVDNHPDVDDIDALQEEVAEMKEEMSFLSETVLI NREGYIPHYTEERINLFEKLVKQVSAEYDFYDPEAEMDMMFPNRHDDDYDDDDFSIDGFF GED >gi|228306770|gb|ACLR01000232.1| GENE 29 34740 - 35651 357 303 aa, chain - ## HITS:1 COG:no KEGG:BT_2509 NR:ns ## KEGG: BT_2509 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 8 302 5 299 300 264 42.0 3e-69 MGARNADLFGRYVWLIDTIRRYRRITFQEINECWKRSHLGYGDDLPWRTFMNHKKAIADV FNVYIECDAKDGYKYYIDHQEDLEGDGLRSWLVDSYATLNQLQADRSLEHRIQFEEMPSG SRFLTRILEAMRFDRVLKITHQGFGKDYASTFEVEPYVMKVYNRRWYLVGRSPYYDDVRI YGLDRIQEIEVLEKMFKMPDDFDINAFFEGCVGVIADKKIGIEHVVIKAYDYARKYLATL PIHPSQKEIARDDESTTFSYDVRPNYEFLQALLMQVDQIEVVEPESVRKQMRNIAKNLMH IYK >gi|228306770|gb|ACLR01000232.1| GENE 30 35863 - 36222 283 119 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSDSILERFDEMSKALHLNNKVKRLSTYENYRELVIERIVKQQNLISLDLQDIEAVCKSG DVLDALAFDISRDSPNRITSAIQQLRQAHEEITLSSWLCNMAIRDQEEVPLWAAYLKDI >gi|228306770|gb|ACLR01000232.1| GENE 31 36215 - 37504 277 429 aa, chain - ## HITS:1 COG:aq_1008 KEGG:ns NR:ns ## COG: aq_1008 COG0587 # Protein_GI_number: 15606309 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Aquifex aeolicus # 183 415 580 818 1161 179 36.0 9e-45 MAKKDYLLPKYWDNASGDEEYLRDLVVEGACERYGEDWSDELANRIDYELRYIEDSGYAD YFLIVADYVQHAREIGRVSPGRGSAAGSIVNYCLGITSIDPLKFGLLFERFCNPDKRLLP DIDIDVDMATQGKMFDYLSEHYDHVAYGREETHPIFICSQNIVDIVSVEKKGVRNRPTIA VSMLDAEDAGLIPFHLLRTEALSVIDLCLTMSDGNFDLDNLPLNDKTTMNLFRQGDTCGI YDFDSSTMQDLLRQAAPQTFEELVALYTMCHPGPLDWTTEYIARKNGDKPIEYVIPELRE ILGYTYGMTIYQEQIMLIAQRLASFTPGESDQLRRDLGKKKYDSFVVLKDKFIAQGTRNG FPTDALRGIFEEWEHTTCYTFIRSHAVCYTFLAYQIGYLKVHFPKEFATAYKTMELASAM SNYSNYSDE >gi|228306770|gb|ACLR01000232.1| GENE 32 37760 - 38254 141 164 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGQSNDKYFNQKCPTNRNPHRSPKAPFDTQSVTALASSNFGAKRLEIHFCRETWVKMRTG WELGVEGLWKFEYPDPFHPNAVIEDHVKRHYGEPINIALCMADTSLLSVYPAFNLLRLFS SYTSRGGTLGYFDPINYGMVVTIGTPMHPSTNRLKACCFTKYNI >gi|228306770|gb|ACLR01000232.1| GENE 33 38253 - 39473 1155 406 aa, chain + ## HITS:1 COG:no KEGG:Dalk_2552 NR:ns ## KEGG: Dalk_2552 # Name: not_defined # Def: transposase IS4 family protein # Organism: D.alkenivorans # Pathway: not_defined # 118 376 121 376 627 153 34.0 1e-35 MHANVQTRFNPAIGEKAPYYRLKESYRDVRGNVHSLILLNVGFDPSIDALQAKKIARALT NRFENRHAKTLFSERLNGLTEHEQAKADEWWNRMIQEGGIDRFDKREQAARKEAEHYIDL DTAKHTDARNVGAEWLCKQTIDKLELESFLKRQGWSEQAIHTALSALIVRTVYATSEHAS YFTMRDNSAAAELYSGRPDWLPGRNALYTITDQLFVLKEQLELHLCMMTDHLFNIDNKLM LFDLTNFYFEGSKRNSQKSKFGRSKEKRSDCKLLILALCINKEGFIRYSSILEGNTADPK SLPDMIESLAQKSPARKEKTLIVMDAGIATEENLTKIKAKGYNYLCVSRTRLKEYTLRED HKCVVVQDSSKREIKLREVHTAPDEDYFLEITSPSKAMTEASMNRQ >gi|228306770|gb|ACLR01000232.1| GENE 34 39648 - 40133 273 161 aa, chain + ## HITS:1 COG:no KEGG:Mmc1_1526 NR:ns ## KEGG: Mmc1_1526 # Name: not_defined # Def: transposase, IS4 family protein # Organism: Magnetococcus_MC1 # Pathway: not_defined # 2 149 476 624 632 99 35.0 4e-20 MQEVAWKIKDLSKVEGGHGVYFLRTNVRTLDERTTWDYYNLIREIECTNRQLKTDLHLRP LFHQTDQRSDAHLFFGLLAYWVVNTIRCGLKAQGENCYWREIVRRMSTQKLVTTEGVNPL GEKVEMRQCSKPSKQASEIYQKLGLREAPFRKIKICRTQSP >gi|228306770|gb|ACLR01000232.1| GENE 35 40206 - 41315 706 369 aa, chain - ## HITS:1 COG:no KEGG:PG1490 NR:ns ## KEGG: PG1490 # Name: not_defined # Def: TraG family protein # Organism: P.gingivalis # Pathway: not_defined # 1 369 299 667 669 691 90.0 0 MLNLNRSWIQKQGDFFVESPIILLAAIIWFLKIYEEGKYCTFPHAIEFLNRPYAQIFPIL TSYDELANYLSPFMDAWEGGAQDQLQGQIASAKIPLSRMISPALYWVMTGDDFSLDINNP NEPKVLVVGNNPDRQNIYSAALGLYNSRIVKLINKKHQLKSSVIIDELPTIYFRGLDNLI ATARSNKVAVCLGFQDFSQLTRDHGEKESKVIQNTVGNVFSGQVVGETAKTLSERFGKVL QQRQSMTINRNDKSTSISTQMDSLIPASKISNLTQGMFVGAVSDNFDERIDQKIFHAEIV VDVAKVSAETKAYQPIPIIADFTNENGSDSLRETIEANYRQVKQEVLSLVDSEIERIKND PTLAHLIKE >gi|228306770|gb|ACLR01000232.1| GENE 36 41184 - 41504 213 106 aa, chain + ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 47 99 286 338 368 63 54.0 3e-09 MWKGAILPLLVYLQKPNDSRKQDNWRLHKEVTLLLNPGAVQIEHDGVAGWIIEADGGIGA YGRNVNQTAQRGTQGAYTGGKAVASATGSMAGNVGERIKGALIKGK >gi|228306770|gb|ACLR01000232.1| GENE 37 41867 - 42088 259 73 aa, chain + ## HITS:1 COG:no KEGG:PG1478 NR:ns ## KEGG: PG1478 # Name: not_defined # Def: conjugative transposon protein TraK # Organism: P.gingivalis # Pathway: not_defined # 1 60 1 60 207 94 75.0 8e-19 MEFKSLTNIETSFKQIRLYAIIFAIVCIAVSSYAVYASYSFAKKQREKVYVLDQGKSLML DPTEQCHGAELGD >gi|228306770|gb|ACLR01000232.1| GENE 38 42261 - 42666 264 135 aa, chain + ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 135 110 269 341 212 62.0 3e-54 MSVICEDGSFYAFNVKYADEPGKLSMEMKDFLSPTEGRLPSNRADIYFKELGSESPILVK LIMKSIYQNDKRTIKHVGAKQFGMRFLLRGLYAHNGLLYFHVRMDNESNMPYAVDFITFK VVDKKVAKHTAIQER Prediction of potential genes in microbial genomes Time: Fri May 27 10:30:55 2011 Seq name: gi|228306766|gb|ACLR01000233.1| Porphyromonas uenonis 60-3 deg1118640599678, whole genome shotgun sequence Length of sequence - 571 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 237 370 ## COG0450 Peroxiredoxin - Prom 323 - 382 4.6 Predicted protein(s) >gi|228306766|gb|ACLR01000233.1| GENE 1 3 - 237 370 78 aa, chain - ## HITS:1 COG:STM0608 KEGG:ns NR:ns ## COG: STM0608 COG0450 # Protein_GI_number: 16763985 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 8 78 3 72 187 93 59.0 1e-19 MQMTMQPIINSNLPEFKVPAYTKSKGFHEVSNEDLKGRWSVLFFYPGDFTFVCPTELADL ADNYAEFQQIGVDIYSVS Prediction of potential genes in microbial genomes Time: Fri May 27 10:30:56 2011 Seq name: gi|228306765|gb|ACLR01000234.1| Porphyromonas uenonis 60-3 deg1118640599525, whole genome shotgun sequence Length of sequence - 585 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 10:30:56 2011 Seq name: gi|228306763|gb|ACLR01000235.1| Porphyromonas uenonis 60-3 deg1118640599675, whole genome shotgun sequence Length of sequence - 542 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 230 219 ## gi|228469938|ref|ZP_04054867.1| transposase - Prom 257 - 316 1.9 Predicted protein(s) >gi|228306763|gb|ACLR01000235.1| GENE 1 2 - 230 219 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469938|ref|ZP_04054867.1| ## NR: gi|228469938|ref|ZP_04054867.1| transposase [Porphyromonas uenonis 60-3] # 1 76 1 76 84 151 100.0 1e-35 MEYHFIGIDVSKEKLDATLIRYESESDSEQQLAYTTVENNPKGFRSLVSWSKKNAGRGVK TDTMLFCCETTGGYDR Prediction of potential genes in microbial genomes Time: Fri May 27 10:31:02 2011 Seq name: gi|228306759|gb|ACLR01000236.1| Porphyromonas uenonis 60-3 deg1118640599712, whole genome shotgun sequence Length of sequence - 952 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 14 - 367 564 ## GFO_0855 IS116/IS110/IS902 family transposase + Prom 505 - 564 1.5 2 2 Tu 1 . + CDS 671 - 950 157 ## gi|228469370|ref|ZP_04054385.1| TonB-dependent receptor domain protein Predicted protein(s) >gi|228306759|gb|ACLR01000236.1| GENE 1 14 - 367 564 117 aa, chain + ## HITS:1 COG:no KEGG:GFO_0855 NR:ns ## KEGG: GFO_0855 # Name: not_defined # Def: IS116/IS110/IS902 family transposase # Organism: G.forsetii # Pathway: not_defined # 2 99 216 314 328 77 40.0 1e-13 MLIVFTDNFKGWSAKKMASYCGIAPFYESSGSSVFHKSNTGGYSNRRLKGILTQAARSAI THNPTFKQYYQRMKAQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRALRA >gi|228306759|gb|ACLR01000236.1| GENE 2 671 - 950 157 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469370|ref|ZP_04054385.1| ## NR: gi|228469370|ref|ZP_04054385.1| TonB-dependent receptor domain protein [Porphyromonas uenonis 60-3] # 1 93 1 93 819 190 100.0 2e-47 MRSLHYIALLLCILLQGCALALHGQTTDTTAVATPHRVALTGYVLDRDREPIEFASVRVE GTSIGTWSDLTGAYRLELTPTTDSVVVSYSSIG Prediction of potential genes in microbial genomes Time: Fri May 27 10:31:10 2011 Seq name: gi|228306756|gb|ACLR01000237.1| Porphyromonas uenonis 60-3 deg1118640599769, whole genome shotgun sequence Length of sequence - 771 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 267 301 ## gi|228469603|ref|ZP_04054589.1| internalin-related protein + Term 278 - 312 4.1 Predicted protein(s) >gi|228306756|gb|ACLR01000237.1| GENE 1 1 - 267 301 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228469603|ref|ZP_04054589.1| ## NR: gi|228469603|ref|ZP_04054589.1| internalin-related protein [Porphyromonas uenonis 60-3] # 1 88 392 479 479 176 100.0 6e-43 KATFVDHTGVETTVTQRMQLYPNPATDYLLVEGVAPASEVTLHSMTGERLYAGRADSRGV LQIDLTPYADGVYLVCVAGETYRVVVRH Prediction of potential genes in microbial genomes Time: Fri May 27 10:31:15 2011 Seq name: gi|228306753|gb|ACLR01000238.1| Porphyromonas uenonis 60-3 deg1118640599545, whole genome shotgun sequence Length of sequence - 511 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 510 459 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228306753|gb|ACLR01000238.1| GENE 1 3 - 510 459 169 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 42 156 123 238 294 90 40.0 1e-18 NDMLLRSRKRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYL SLTMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYQKHGFDLKGLIFHSDRGCQYVSKQ MTDYEASLGIVTSVTQTGNPLHNAMAERLNGIIKNDWLYNFEDKPIEEV Prediction of potential genes in microbial genomes Time: Fri May 27 10:31:16 2011 Seq name: gi|228306748|gb|ACLR01000239.1| Porphyromonas uenonis 60-3 ctg1118640599511, whole genome shotgun sequence Length of sequence - 1064 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 237 203 ## PG1475 conjugative transposon protein TraN 2 1 Op 2 . + CDS 249 - 881 259 ## PG1474 conjugative transposon protein TraO 3 1 Op 3 . + CDS 894 - 1062 71 ## gi|228471449|ref|ZP_04056237.1| conjugative transposon protein TraQ Predicted protein(s) >gi|228306748|gb|ACLR01000239.1| GENE 1 1 - 237 203 78 aa, chain + ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 78 264 341 341 94 58.0 1e-18 TAIQETILQPLRAYNDLAVVAPKSELRTIYALESFSLPEGKILEISLHELNGGRTLTFTV DNKDLVRARAIDDLELRF >gi|228306748|gb|ACLR01000239.1| GENE 2 249 - 881 259 210 aa, chain + ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 21 210 10 192 192 124 37.0 3e-27 MTMTINNPIRYGRLASLPVALLCLLLLALPSVSKAQRAIPHQDGLILSGGVPLTNETPFV QWGNWSARVDYTHYFFHADYLVVGVEYSHDKRLYTDVLKHRYSIPVEDYLFKAGYMYPVL TDYTHTFLLYAGLSALCGYEDVNRRQYDLSNGATIRSRSHFVYGGSAHLSAEIFLTDNWL LTVRGDGNFLVGSQLNLFRPLATMGFRFNF >gi|228306748|gb|ACLR01000239.1| GENE 3 894 - 1062 71 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471449|ref|ZP_04056237.1| ## NR: gi|228471449|ref|ZP_04056237.1| conjugative transposon protein TraQ [Porphyromonas uenonis 60-3] # 1 56 1 56 57 88 100.0 1e-16 MNRYFILPLLLAMLLGACSREVNVQEVYPFEVELMPYHQEATKGQAVEVRCKLTPQ Prediction of potential genes in microbial genomes Time: Fri May 27 10:31:26 2011 Seq name: gi|228306745|gb|ACLR01000240.1| Porphyromonas uenonis 60-3 ctg1118640599728, whole genome shotgun sequence Length of sequence - 1964 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 9 - 380 274 ## MS2005 hypothetical protein + Prom 490 - 549 2.7 2 2 Tu 1 . + CDS 621 - 1931 1215 ## gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 Predicted protein(s) >gi|228306745|gb|ACLR01000240.1| GENE 1 9 - 380 274 123 aa, chain + ## HITS:1 COG:no KEGG:MS2005 NR:ns ## KEGG: MS2005 # Name: not_defined # Def: hypothetical protein # Organism: M.succiniciproducens # Pathway: not_defined # 1 110 103 212 212 88 36.0 6e-17 MSVGKMSHITFCSQLKKWETKWDTFLKEKTINDENGKWQYTHKSLRSAHFSFRQYLPTLF TYEEHPDIQIPKTNNSIEGLFTALKSRLRAHNGMSQAHKKRFVDGFFRHRDIAQFTSKKE EGQ >gi|228306745|gb|ACLR01000240.1| GENE 2 621 - 1931 1215 436 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471453|ref|ZP_04056240.1| ## NR: gi|228471453|ref|ZP_04056240.1| hypothetical protein PORUE0001_1268 [Porphyromonas uenonis 60-3] # 15 436 1 422 422 862 100.0 0 MKLAYNLSILIGLMMLLSGCGLMKLFTSEPRDVCKAQLETKEGATYTGYLRMPMSGDKEL KLFDDLALAHSAGTFKSEDLKGIELSNPKKPDSSYRFEYKKFSTFLQSNAAWMTLVDRGP ELTAYLLASSYKIDENGDIFFIGNEQRIIRSGGSMAVVKPSFPLFLEKRGGILRKVALVH GINYEGSQFRGGVVRFLADDPELCSYVRGLKWEFEDIDKVVKYYDPHRKGELVIKDDRGQ VLALPPHKMVTGALSGELIYTADLAKNLTPHFGMASYLGLRSSLGTYFTYGGSVGFNQPC LVDDMALITEDPSFLLKDRKEVEVPQEFIKRVTLFSFNAFAGLQVPLDLKSVYVIPSLSG CVTGDLHSDYSLISAGPLVRCDFGIPLKYGNMLFFGAGYKYGFPIKDADEMAADNYKNVT PYGQSHTVFLSIGYMY Prediction of potential genes in microbial genomes Time: Fri May 27 10:31:43 2011 Seq name: gi|228306739|gb|ACLR01000241.1| Porphyromonas uenonis 60-3 deg1118640599613, whole genome shotgun sequence Length of sequence - 1292 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 23 - 160 151 ## gi|228471259|ref|ZP_04056067.1| transposase 2 1 Op 2 . - CDS 157 - 327 221 ## gi|228469653|ref|ZP_04054627.1| transposase Predicted protein(s) >gi|228306739|gb|ACLR01000241.1| GENE 1 23 - 160 151 45 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471259|ref|ZP_04056067.1| ## NR: gi|228471259|ref|ZP_04056067.1| transposase [Porphyromonas uenonis 60-3] # 1 45 81 125 125 97 100.0 3e-19 MKAQGKPYGVILNNVNNKLLHILFSLVAHDCDFELDHEAKRALRA >gi|228306739|gb|ACLR01000241.1| GENE 2 157 - 327 221 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469653|ref|ZP_04054627.1| ## NR: gi|228469653|ref|ZP_04054627.1| transposase [Porphyromonas uenonis 60-3] # 1 53 63 115 163 111 100.0 1e-23 MASYCGIAPFYESSGSSVFHKSNTGGYSNRRLKGILTQAARSAITHNPTFKQYTNA Prediction of potential genes in microbial genomes Time: Fri May 27 10:31:55 2011 Seq name: gi|228306727|gb|ACLR01000242.1| Porphyromonas uenonis 60-3 ctg1118640599672, whole genome shotgun sequence Length of sequence - 8978 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 5, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 192 - 235 12.2 1 1 Op 1 . - CDS 280 - 1236 1270 ## COG0451 Nucleoside-diphosphate-sugar epimerases 2 1 Op 2 1/0.000 - CDS 1301 - 1960 339 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 3 1 Op 3 . - CDS 1987 - 3684 1967 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 3713 - 3772 2.3 4 2 Op 1 . - CDS 3774 - 4409 648 ## gi|228471466|ref|ZP_04056251.1| hypothetical protein PORUE0001_0798 5 2 Op 2 . - CDS 4425 - 5891 1749 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase + Prom 5978 - 6037 5.5 6 3 Tu 1 . + CDS 6260 - 6520 419 ## COG0724 RNA-binding proteins (RRM domain) + Term 6644 - 6690 6.1 - Term 6632 - 6677 13.5 7 4 Tu 1 . - CDS 6700 - 7581 1460 ## COG3588 Fructose-1,6-bisphosphate aldolase 8 5 Tu 1 . + CDS 8265 - 8976 869 ## COG3590 Predicted metalloendopeptidase Predicted protein(s) >gi|228306727|gb|ACLR01000242.1| GENE 1 280 - 1236 1270 318 aa, chain - ## HITS:1 COG:SA0511 KEGG:ns NR:ns ## COG: SA0511 COG0451 # Protein_GI_number: 15926231 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 315 1 314 321 353 53.0 4e-97 MKNILIIGSTGQIGSELTMKLRREYQNGSVVAGYIAAMPPKGELLESGPAELADITDSAQ LAAIVDKYKIDTIYNLAALLSATAEAKPQLAWHIGLGGLFNVLEIAREKGCAVFTPSSIG AFGNETPKDKTPQDTIQRPKTMYGVTKVAGELLSDYYHKRFGVDTRSVRFPGLISNVTLP GGGTTDYAVEIYYAAVKEGKFVCPIKEGTYMDMMYMPDALHAMVQLMEADPTRLVHRNSF NIASMSFEPGQIAAAVKRIIPDFEMSYDVDPLRQAIAESWPNSLDDSCARREWDWQPHYD LDTMSQDMIQVLRARYGK >gi|228306727|gb|ACLR01000242.1| GENE 2 1301 - 1960 339 219 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 15 212 18 201 208 135 40 1e-31 MLEQLTLWFFDHLNYWTVFLLMTIESSFIPFPSEVVVPPAAFLAATGGQMSVVGVLFFAT CGAIVGALINYYLAMWLGRPIVYRFAGSRVGRMLLLSPEKLDRANEYFVRKGAVSTFVGR LVPAIRQLISIPAGLSRMPLGAFVGYTALGAGVWNAVLALIGVLLSRVPGIETKEQVVAK ASEYSHIIGYSILAIVLLLLAIYIVRQVKRKRRRNLIID >gi|228306727|gb|ACLR01000242.1| GENE 3 1987 - 3684 1967 565 aa, chain - ## HITS:1 COG:RSc0791 KEGG:ns NR:ns ## COG: RSc0791 COG0008 # Protein_GI_number: 17545510 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Ralstonia solanacearum # 20 563 16 576 580 585 53.0 1e-167 MNKTPLEDATSNGAESTGLNFIEQVVVADIQSGKYDGRVQTRFPPEPNGYLHIGHAKAIC IDFGIAQKYGGVCNLRFDDTNPIKEDVEYVDAIREDIHWLGFEWGKECYASDYFPQLYAF AERLIMTGHAYVDEQSAEEIAQQKGTPTTPGINSPYRDRPAEESLDLFHRMNAGEFPEGA MTLRAKIDMASDDMHFRDPIIYRIIKRPHHRTGTEWQVYPMYDFAHGQSDYFEGVTHSIC TLEFVPHRPLYNYLVELLMPEGTTYRPYQFEFNRLNLTYTMMSKRKLLSLVQQGLVTGWD DPRMPTLCGLRRRGYTPQSIRDFVSMIGYTRYEGTIDLSLLEHAVRNDLNKHAARVSAVL DPVKLILTNLPEGHDESLEMVNNPEDLSEGTHIQHLTRELWIDRSDFMEEAPKKYYRLTP GGLDVRLRGGYIIKCTGCEKDAEGNVTAVLAEVYLDSKTGMEGSNRKVKATIHWVSTAYA LDAEVRLYDRLFLEEDPSGIPAEELKDHLNPDSLIVQHAYVEECLQDAQVGDHLQFQRVG YFTVDPDSRPGALVFNRTVSLKDRR >gi|228306727|gb|ACLR01000242.1| GENE 4 3774 - 4409 648 211 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471466|ref|ZP_04056251.1| ## NR: gi|228471466|ref|ZP_04056251.1| hypothetical protein PORUE0001_0798 [Porphyromonas uenonis 60-3] # 1 211 1 211 211 382 100.0 1e-105 MTDQTKVAEELAELHHFGSHNIYMPTAPVGHFLPYYPWRTLYEQLPFKGAYPQLLYTDSR ADALFDALSLRLAELVADEDFHMEVSLQYPMGIPVAEVREGYLTLIITDPNLAQRLEGLP VEVPRELWLDMLAMSLIQYILQTEIAPEEQVEVALVEMPHEGAEEESEEVRPLWVKQWEQ TQEMIRKSNGAHRYRYGFSLTLAGRTSSNVE >gi|228306727|gb|ACLR01000242.1| GENE 5 4425 - 5891 1749 488 aa, chain - ## HITS:1 COG:ML2697 KEGG:ns NR:ns ## COG: ML2697 COG0617 # Protein_GI_number: 15828457 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Mycobacterium leprae # 16 466 22 474 486 248 37.0 1e-65 MPIPFDPYADYSPYLRHPVFALVGRVADALDLETYVVGGWVRDLFLQRPSSDIDIVCVGS GIALAKAVAREIGPKCQVHVFANFGTAQLRYKGVEVEFVGARRESYQRDSRKPIVEDGTL EDDQERRDFTINAMAISLNERTYGELVDPFYGLEDLQDYMIRTPVDPQVTFDDDPLRMMR AVRFASQLGFFIDDAVFDAIVKLRERIKIVSAERIIVELNKIMLSPRPSVGLSLMEQTGL LELILPEVQLLRGTETVVGVGHKDNLAHTYQVVDQLAAKSDNLYLRWAALLHDIAKPKTK RWDAQQGWTFHNHNYIGAKMVPRMFRRLKLPLDSHMQYVAKLVDLHMRPSSLVDEGVTDS AIRRLLFDAGDDIEDLMTLVESDVTSKNPKRVQQVLDNYQVIRRKLQEVEEKDRIRNFAP PIDGAEIMRLFGIPPSQIVGTLKERIKNAILDGEIPNEYGPARELLLKEAAERGLKPQEG EPAKPTND >gi|228306727|gb|ACLR01000242.1| GENE 6 6260 - 6520 419 86 aa, chain + ## HITS:1 COG:VC0159 KEGG:ns NR:ns ## COG: VC0159 COG0724 # Protein_GI_number: 15640189 # Func_class: R General function prediction only # Function: RNA-binding proteins (RRM domain) # Organism: Vibrio cholerae # 2 78 65 141 152 75 46.0 2e-14 MTLYLGNLSYRVRENDLEQLLSEFGEVSNARVVMDRATGRSRGFGFADMADEDARRAIEA LSEQEFEGRRLLIREAEDRPRRERRF >gi|228306727|gb|ACLR01000242.1| GENE 7 6700 - 7581 1460 293 aa, chain - ## HITS:1 COG:FN0322 KEGG:ns NR:ns ## COG: FN0322 COG3588 # Protein_GI_number: 19703667 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphate aldolase # Organism: Fusobacterium nucleatum # 1 293 1 295 295 363 62.0 1e-100 MNQKQLEQMKSGRGFIGALDQSGGSTPKALKAYGITEDAWKNEDEMFDLIHQMRTRMIKS PAFATGKLVGVILFERTMRGQIDGMNTADYLWEKLSIVPFLKVDKGLQELQDGVQLMKPF PGLDDLLKDATKYHIFGTKMRSVIKEANEKGIKAIVDQQFEWGKQILAHDLVPILEPEVD IHCPDKAKAEEILKRELLAHLDKLDRPVMLKITLPTEDNLYKEVIEHPNMLRVVALSGGY SREHANELLARNKGVIASFSRALAEGLTAQQSDEEFNATIAKSVDDVYQASIK >gi|228306727|gb|ACLR01000242.1| GENE 8 8265 - 8976 869 237 aa, chain + ## HITS:1 COG:XF0576 KEGG:ns NR:ns ## COG: XF0576 COG3590 # Protein_GI_number: 15837178 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Xylella fastidiosa 9a5c # 23 235 13 245 700 100 28.0 2e-21 MNHFEIEQSNMNNRKLLVAALCAASITLSACSKKQGTNEEIVPAINLADMDTLVRPQDDF YHYVNGGWIKANPLKPAYSSFGAFDVLSDRSIEQIHGIVDELAQGSYKAGSNEYRVSVLY KQAIDSVKRNELGAQPILDELKSIEAINSKKALVDFAAQQDNKGDDTFFGTYVMADAENS DMNIFNLKQTSLALGNKEYYTDPKNGEIIKAYNQYIERIAQLAGYSAEEAQRIAKNN Prediction of potential genes in microbial genomes Time: Fri May 27 10:32:05 2011 Seq name: gi|228306723|gb|ACLR01000243.1| Porphyromonas uenonis 60-3 ctg1118640599493, whole genome shotgun sequence Length of sequence - 1594 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 487 231 ## gi|228471473|ref|ZP_04056257.1| hypothetical protein PORUE0001_0047 2 1 Op 2 . - CDS 500 - 817 308 ## gi|228471471|ref|ZP_04056255.1| hypothetical protein PORUE0001_0048 3 1 Op 3 . - CDS 829 - 1593 328 ## COG4974 Site-specific recombinase XerD Predicted protein(s) >gi|228306723|gb|ACLR01000243.1| GENE 1 1 - 487 231 162 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471473|ref|ZP_04056257.1| ## NR: gi|228471473|ref|ZP_04056257.1| hypothetical protein PORUE0001_0047 [Porphyromonas uenonis 60-3] # 1 162 1 162 162 277 100.0 2e-73 MKEKSFQFRSSWYEAITQLPDSSQGVAYSLIMGYALKGLEPDLATVPALVQGVFLVVREQ IDADAHRQAEISSIRKTCGKLGGRPRKSEQGAKASTTTPNKGVTDKSTLDGGQKLNNQKV YLVSSAPKAGEKQKVYLLSDNTQVADVEQSTAKPLSSSSTTQ >gi|228306723|gb|ACLR01000243.1| GENE 2 500 - 817 308 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471471|ref|ZP_04056255.1| ## NR: gi|228471471|ref|ZP_04056255.1| hypothetical protein PORUE0001_0048 [Porphyromonas uenonis 60-3] # 1 105 1 105 105 133 100.0 4e-30 MNQSTVDPQVQLLLLQALLARRDETNRNEVFLSNTELEVLLQIPRTSIELAVQRGKLVSV TPTSQYSYSAVLSAVETRQLSPLITEEERTDILERLRAYRQLINL >gi|228306723|gb|ACLR01000243.1| GENE 3 829 - 1593 328 254 aa, chain - ## HITS:1 COG:lin2069 KEGG:ns NR:ns ## COG: lin2069 COG4974 # Protein_GI_number: 16801135 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Listeria innocua # 72 246 112 296 297 59 30.0 5e-09 KDDLPLSAVQKDELSSYELYLKGEKNYTHNTAIKVLRFLRKAMERAVEDDLLMRVPFPKV VLRMQPTDRGFLDDSDLERLRSVELSNPKLLLVRDAFLFSCYTGLSYADISRLVRDNIIS MHGQSWVVLRRKKTGVLSTIPLMSVAVHILTPYLAQATSTECRIFPLCTNPYVNQQLKEI QRLSGVKRVLTYHLARHTFATLALTKGVSLDTVGSVLGHSCLSTTRIYARVLPLKVSEEM RSLDNRLQEECVTN Prediction of potential genes in microbial genomes Time: Fri May 27 10:32:17 2011 Seq name: gi|228306720|gb|ACLR01000244.1| Porphyromonas uenonis 60-3 ctg1118640599662, whole genome shotgun sequence Length of sequence - 2029 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1030 529 ## gi|228471476|ref|ZP_04056259.1| hypothetical protein PORUE0001_0727 + Term 1073 - 1114 5.7 - Term 1061 - 1102 5.7 2 2 Tu 1 . - CDS 1140 - 1712 233 ## gi|228469955|ref|ZP_04054878.1| hypothetical protein PORUE0001_0510 - Prom 1764 - 1823 3.4 Predicted protein(s) >gi|228306720|gb|ACLR01000244.1| GENE 1 2 - 1030 529 342 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228471476|ref|ZP_04056259.1| ## NR: gi|228471476|ref|ZP_04056259.1| hypothetical protein PORUE0001_0727 [Porphyromonas uenonis 60-3] # 1 342 1 342 342 644 100.0 0 SPDNSQIPPIGDVAQGENGNYYINGADTGIAIKPNHKPVVTIVDGYYYIDGVKTPVPAPP APVAPQYPNGVLVPALKKQGKYEVLLISKSPEVTYTDPTTNEKRKVVANGVRIEDGACLY QCLSPDSVPVPFATISGLPRIPDKRYQTDKNGCFVVPASDLPIKGKPETGVTKSIVVNGK QFSSDNTTYVPSRMIVKLIYSHHKGSAFYFRLTQWDSEEAGGKFVPLVTPLDGAVYGNPQ NFILWATRDKAKGIGVKADYAALKRSIAHGTSDGFIVVILPNVSISDPSLPDYERKDRKP LFLMLGMMRSPYSDRPIRTLQLLGMAEKSFWDSFTDFFTPFE >gi|228306720|gb|ACLR01000244.1| GENE 2 1140 - 1712 233 190 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228469955|ref|ZP_04054878.1| ## NR: gi|228469955|ref|ZP_04054878.1| hypothetical protein PORUE0001_0510 [Porphyromonas uenonis 60-3] # 1 189 1 191 192 167 47.0 3e-40 MNKTKKWSLATVLCGLLVTTLLTACGGGGGSVWKEPNSENKREKPNQELPTIEQRLTFKA DKPIYFNCDAFGFYLLYVNGDLKHEHFKEDVKVQGDTEASYVFEVKASDEKPELSELRLT FSFVPVDVYEKDPEFDNNPNPLKPIPTVVTYTWQERINGKITREESHTVKLYDPDNQALY KSKEYKSKIN Prediction of potential genes in microbial genomes Time: Fri May 27 10:32:40 2011 Seq name: gi|228306717|gb|ACLR01000245.1| Porphyromonas uenonis 60-3 deg1118640599579, whole genome shotgun sequence Length of sequence - 550 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 10:32:47 2011 Seq name: gi|228306691|gb|ACLR01000246.1| Porphyromonas uenonis 60-3 deg1118640599643, whole genome shotgun sequence Length of sequence - 27097 bp Number of predicted genes - 27, with homology - 25 Number of transcription units - 10, operones - 6 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 1866 1791 ## PG1481 conjugative transposon protein TraG 2 1 Op 2 . - CDS 1845 - 2168 153 ## PGN_0066 probable conserved transmembrane protein found in conjugate transposon TraF 3 1 Op 3 . - CDS 2170 - 2511 294 ## PG1483 conjugative transposon protein TraE 4 1 Op 4 . - CDS 2539 - 3045 195 ## gi|228471494|ref|ZP_04056275.1| hypothetical protein PORUE0001_1926 5 1 Op 5 . - CDS 3047 - 3355 181 ## gi|228471493|ref|ZP_04056274.1| conserved hypothetical protein 6 1 Op 6 . - CDS 3366 - 4754 822 ## BF2183 hypothetical protein 7 1 Op 7 . - CDS 4778 - 5362 402 ## BDI_2596 hypothetical protein - Prom 5449 - 5508 3.4 + Prom 6041 - 6100 2.8 8 2 Op 1 . + CDS 6145 - 6561 252 ## PG1488 hypothetical protein + Prom 6571 - 6630 1.5 9 2 Op 2 . + CDS 6650 - 7744 411 ## PG1489 hypothetical protein 10 2 Op 3 . + CDS 7765 - 9804 1388 ## COG3505 Type IV secretory pathway, VirD4 components + Term 9824 - 9872 18.1 - Term 9805 - 9868 26.2 11 3 Op 1 . - CDS 9889 - 10716 349 ## BVU_3670 hypothetical protein 12 3 Op 2 . - CDS 10706 - 12055 201 ## COG1106 Predicted ATPases 13 3 Op 3 . - CDS 12149 - 12946 130 ## Coch_1599 hypothetical protein 14 3 Op 4 . - CDS 12901 - 13230 96 ## Coch_1598 hypothetical protein - Prom 13454 - 13513 3.7 - Term 13531 - 13564 -0.4 15 4 Tu 1 . - CDS 13706 - 14182 225 ## gi|228471491|ref|ZP_04056272.1| hypothetical protein PORUE0001_1935 - Prom 14424 - 14483 4.8 16 5 Tu 1 . + CDS 14237 - 14419 84 ## + Term 14495 - 14528 2.0 17 6 Op 1 . - CDS 14756 - 16207 854 ## PG1494 hypothetical protein 18 6 Op 2 . - CDS 16219 - 16674 227 ## gi|228471490|ref|ZP_04056271.1| hypothetical protein PORUE0001_1937 - Prom 16697 - 16756 2.1 19 7 Op 1 . - CDS 16775 - 18640 668 ## gi|228471495|ref|ZP_04056276.1| hypothetical protein PORUE0001_1938 20 7 Op 2 . - CDS 18675 - 20774 1323 ## COG0550 Topoisomerase IA 21 7 Op 3 . - CDS 20780 - 23176 1019 ## COG2849 Uncharacterized protein conserved in bacteria 22 7 Op 4 . - CDS 23268 - 23564 346 ## gi|228471483|ref|ZP_04056264.1| hypothetical protein PORUE0001_1941 23 7 Op 5 . - CDS 23581 - 24456 415 ## COG0270 Site-specific DNA methylase - Prom 24544 - 24603 2.2 24 8 Tu 1 . - CDS 24607 - 24960 361 ## gi|228471502|ref|ZP_04056283.1| hypothetical protein PORUE0001_1943 - Prom 25058 - 25117 7.1 + Prom 25195 - 25254 7.2 25 9 Tu 1 . + CDS 25368 - 25601 175 ## 26 10 Op 1 . - CDS 25981 - 26448 260 ## gi|228471497|ref|ZP_04056278.1| hypothetical protein PORUE0001_1945 27 10 Op 2 . - CDS 26495 - 27013 -55 ## gi|228471501|ref|ZP_04056282.1| hypothetical protein PORUE0001_1946 - Prom 27037 - 27096 3.1 Predicted protein(s) >gi|228306691|gb|ACLR01000246.1| GENE 1 3 - 1866 1791 621 aa, chain - ## HITS:1 COG:no KEGG:PG1481 NR:ns ## KEGG: PG1481 # Name: not_defined # Def: conjugative transposon protein TraG # Organism: P.gingivalis # Pathway: not_defined # 1 620 1 620 841 900 68.0 0 MRNTAKVRNLERLFPLLAVERCIISKEADLTVAFRVELPELFTITEEEYEQIHSTWNKAI KVLPVYSIVHKQDWYTTETYRAEHLGDAQMSFLDRSSERHFNERPYLNHDCYLYLTKTTR QRMAQKSDFSSLVQGRLVPKEMTDKEGINAFLDAVDQFERIVNDSGLFSIVRLTEEELLG KDNEGGLLDRYLSLERDKSASLEDLSLRAKDVRIGDKMLCLHTLSSTEDLPTSVSTDRAF EKLSTDKSSCRLSFSSPVGLLLSCNHIYNQYLFIPDGEEAKKRFESTARNMHSLARYSRA NAINEEWIHEYLNVAVTMGISPIRAHFNVLAWSDNEREMTDIKNMVGSAISSMDCTPRHN TVDTATLYWAGMPGNAGDFPSEESYWTFIPPALCLFSGETNYKDSLSPFGIKMCDRLSGK PIHVDISDLPMKKGITTNRNKFILGPSGSGKSFFCNHMVRQYYEQGTHILLIDTGNSYEG LCQFIHAKTKGEDGIYYTYTEENPIAFNPFYTDDYVFDIEKKESLATLILTLWKSGDEKV TKTEVSELFASIGAYINKITADRSIVPSFNTYYEFMLDEYRQELLSREIKVTREDFNIDN LLTTLKHYYRGGEYDYLLNST >gi|228306691|gb|ACLR01000246.1| GENE 2 1845 - 2168 153 107 aa, chain - ## HITS:1 COG:no KEGG:PGN_0066 NR:ns ## KEGG: PGN_0066 # Name: traF # Def: probable conserved transmembrane protein found in conjugate transposon TraF # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 101 3 102 125 108 52.0 4e-23 MTYEVNKGIGATIEFKGLKSQYLVIFACGLGGVFLVAVVLNLVGVPSVLMVGISALLATV LVYTVFKMNKKYGTHGLMKLRAVAKHPDYLIHRRTVRSMLRCATQRK >gi|228306691|gb|ACLR01000246.1| GENE 3 2170 - 2511 294 113 aa, chain - ## HITS:1 COG:no KEGG:PG1483 NR:ns ## KEGG: PG1483 # Name: not_defined # Def: conjugative transposon protein TraE # Organism: P.gingivalis # Pathway: not_defined # 23 112 11 100 100 99 56.0 4e-20 MKRNILFRTTRVVKLFFAPILYLLTTTTLSAEKSATSGVGAFEGAARSLTAYFDPLVNLI YIIGAVVGLIGAIKVYQKFSQGDPDTGKTAASWFGACIFLVISASVLKAFFIS >gi|228306691|gb|ACLR01000246.1| GENE 4 2539 - 3045 195 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471494|ref|ZP_04056275.1| ## NR: gi|228471494|ref|ZP_04056275.1| hypothetical protein PORUE0001_1926 [Porphyromonas uenonis 60-3] # 69 168 1 100 100 164 100.0 2e-39 MSLFFALALIGFFGLAVVYIALRLPDINPRKRFGQTTTEKSKPLPPLQSPASRKRGRYME IVGRPHTDMSIYFSEAQRKPDRKSIATRHQVEKQVGDKLGVASTSSPLDTSYNSEPSSAT DIDTEELARYPSMSSSEQKAWRAQKLDGVSEKQQAVKEAINKLVTSKA >gi|228306691|gb|ACLR01000246.1| GENE 5 3047 - 3355 181 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471493|ref|ZP_04056274.1| ## NR: gi|228471493|ref|ZP_04056274.1| conserved hypothetical protein [Porphyromonas uenonis 60-3] # 63 102 1 40 40 75 100.0 1e-12 MPTNIEQSAITIPADFSEYSATFFRPPVRTSLSNRKCNVSLNEDVYLTIKRTLSYLGDGE STMGGYVENILLSHLNQYKEILNEETSKRLKQPLIPDSMSSK >gi|228306691|gb|ACLR01000246.1| GENE 6 3366 - 4754 822 462 aa, chain - ## HITS:1 COG:no KEGG:BF2183 NR:ns ## KEGG: BF2183 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 51 420 43 412 483 177 30.0 1e-42 MKHIRNLSIFLTVLFGSLCLLSAQAYPQVETSFISLSRKDYTINYHRNLHSLTIDVDLTS YCKVKSQELLCVYPIYRSSDGRKEHKLAPVYVVGDSRHKQIQRNKLLRNAQGVVYEIVNR PEESIYARKGDIVAPHYEIDFEPWMRHGELRLYMQRYGCASCPSALVAYQSEPIHLDSYS LGRYEYAFIRPADEQTKEYKKSFDSYVSFRYDSSELLFTSENSAELERLNRFIVASQQEE GVRLSSLSIVGYASPEGTANYNQRLSEYRAQALYDYVQGRFPNLVASVEVSGAGEDWSGL RRLVSESTLDNKSQVMRIIDDVPTDVKRDKSMRQLGNYNHLLADYYPLLRRTTFTMSYEV GAFRTDELASVYAKNPLLLKQNELFYLAEQAMERGNSPVPYLRSAYEQYPKDPVAILNYA NALLKYDHNAELAYQLLSPIRTDARAKLPLSIATDMKSSNNL >gi|228306691|gb|ACLR01000246.1| GENE 7 4778 - 5362 402 194 aa, chain - ## HITS:1 COG:no KEGG:BDI_2596 NR:ns ## KEGG: BDI_2596 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 21 192 19 186 188 163 49.0 3e-39 MRQKIITLLFLCFATIGLSHAQKVAIKHNFAYDALFAPNLGIEFSLGDRVTLDTQYSNNT FVFRKQDRLPEWSHWLAQSEVRYWTCESFNGFFIGLHALGGQVRIGHVNLPFVLENKNSV MQNQRYIGWFYGGGLSVGYQWVLSPRSSIELSVGGGYARIDYHKCLACGYKNSEASANYV GPTKASLSYIFFFK >gi|228306691|gb|ACLR01000246.1| GENE 8 6145 - 6561 252 138 aa, chain + ## HITS:1 COG:no KEGG:PG1488 NR:ns ## KEGG: PG1488 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 131 1 128 133 80 38.0 2e-14 MNKEEKTRTLPSKWNRWDVRLSNPEDQIRVIESFKRSGCDTKSDFVRKMILREDFRVLTV DGSMMEYTTKLTDFIFAVNKIGVLYNQAVRAMNKYHSEAKAEQLLNNVSNQQMELMDKLL EVINLTKGLKDDCKSDVP >gi|228306691|gb|ACLR01000246.1| GENE 9 6650 - 7744 411 364 aa, chain + ## HITS:1 COG:no KEGG:PG1489 NR:ns ## KEGG: PG1489 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 13 362 51 417 426 224 36.0 3e-57 MGQVPSPQAIYEDMMMQIPSKTRVKNIAFSCSLNPDPSETLSDEQYVQIAQEFMERMGYG SQPFVVVKHWDIARQHIHIVSTRADKLGRKISDKHEGRKARKVVDALERKYNLKLTKPDK EKVAKKKPVELKQAKPINVREGNVTEQVYNVARQVVQKGAFTSIGGLNALLAPYNLSAKF TKSERKGKQYDGIVYIPMEGGKPVAPPIPSKDLGRGVGYTAVKTAMYKSGKRCQEKAEEM RATIAGVMITRPKTLKEFTDKLNERGLELVAKRNDNGRIYGATYVDRGEMVAISGSKLGS DFSANMLNELFGNTQESNTDRVTQTDKTQRRRYSSSSHRPNISGEDWKEISWQKYLRRKY NKVK >gi|228306691|gb|ACLR01000246.1| GENE 10 7765 - 9804 1388 679 aa, chain + ## HITS:1 COG:alr7213 KEGG:ns NR:ns ## COG: alr7213 COG3505 # Protein_GI_number: 17233229 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Nostoc sp. PCC 7120 # 202 570 117 466 589 89 25.0 2e-17 MGQEDDLRGLAKVMDFIRAVSILFLIIHIYWYCHSAWAEMGWTVGLVDKLLKQFDRSTIL FASPWVTKGFCILLLALSCLGTRGVKNEKYTWGRIYSTLLLGLALFTGSWLIRQLPITPL VTKAGVYALVISAGYVFLMLGGTWISRILKQNVMNDVFNVENESFEQERQLMVNENSVNI PTKYYYKQKWNDGWINVVNPYRASIVLGTPGSGKSFAVVNNYIKQQIEKGFSMYIYDYKF PDLSIIAYNHLLKHADKYDKLPQFYIINFDDPRRSHRCNPIAPEFMSDISDAYESAYTIM LNLNRTWIQKQGDFFVESPIILFAAIIWYLKIYENGLYCSFPHAIEFLNQPYSDIFEILM SYDELANYLAPFMDAWKGGAQDQLQGQLASAKIPLARMISPQLYWVMTGNDFTLDINNPD DPKVLVVGNNPDRQNIYSAALGLYNSRIVKLINKKKIKNKETGEEKRTLKSSVIIDELPT IYFRGLDNLIATARSNRVAVCLGFQDFSQLVRDYGDKEAKVIQNTVGNIFSGQVVGETAK WLSERFGKVLQQRQSISINRNDTSTSISTQLESIIPASKISGLTQGFFVGAVADEFDQRI EQKIFNAQIVVDVAKVKAEEKEYVKEMPQLLHNLRGEQLTDDELDQIIKANYTKIKKDVL SIVIVEKARIAKEQEMATA >gi|228306691|gb|ACLR01000246.1| GENE 11 9889 - 10716 349 275 aa, chain - ## HITS:1 COG:no KEGG:BVU_3670 NR:ns ## KEGG: BVU_3670 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 144 271 2 124 124 77 35.0 5e-13 MPFEVKSLSYDRPEQAVPQDYRQVKLYNFGESRDGEPVSPLNARLNSTYKRVVDQARPTR LYIIISGGELKERHYFSNLGCIVPIGCAIPLYFICPTGIKSGRNHAPHSGSSPQDIFDYW TANYQTATNSLILLGRTYHLTENDRVYFVSDVDDFSLDLQSLLKVDTPPFVRWAISNPCV EVWLYYSCIGVPSKDLCQLLENESISNRSQKLKSLCNEQHKGGIDPRKASAVITTAIANA RSFGYKEDAQGIPLLFCSSLLHFAEEFMEYLSTFE >gi|228306691|gb|ACLR01000246.1| GENE 12 10706 - 12055 201 449 aa, chain - ## HITS:1 COG:alr3406 KEGG:ns NR:ns ## COG: alr3406 COG1106 # Protein_GI_number: 17230898 # Func_class: R General function prediction only # Function: Predicted ATPases # Organism: Nostoc sp. PCC 7120 # 1 436 1 441 463 118 27.0 2e-26 MLLRVIVENFLSYKERQEFTMFPNRDITELTSHIFDKDTIPLLKMASLYGNNASGKSNFA QALSFIRLFALSETTIQSSDVAKHLYRLEQLDKLKESSLSILIEFKSNGSYFIYQVELDL QGVRTEQLLLSGANKTPESLYRRQYSNIELSPSLSSKSLDQWSHTKGILEKRLTQDPYKS VLGLLFEFPVLEEKHIKQAYDWFQQCLVVTSGRASHNQLNALLYESKNLYRFTSQVIRGV DIGVDDLRLRETDLAIWLNQHSDLANTLDMSRRVEASEIHSVVSHLDRPILNRINVAGKE KILELVFAHQGGDGNTYDLDIESESDGTIRALHLMPALFEAINSFGVVVIDEMDTSLHSN LLLDLIAFFSLNPSKGQLIFTLHDTNLLDSIGLLRTDEVWFIEKRVGSSYMYSLDNYTKK MSGDISQKYREGRYGSNYTGNLVQDSNAI >gi|228306691|gb|ACLR01000246.1| GENE 13 12149 - 12946 130 265 aa, chain - ## HITS:1 COG:no KEGG:Coch_1599 NR:ns ## KEGG: Coch_1599 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 1 213 1 213 213 194 52.0 3e-48 MLQTTTVEKRTLELLKQLQSQSELSDFHLAGGTALALYLGHRKSIDLDLFTPYPFDTTRL EHSLVTKFGFQGDYSEQNTLKGRIDDVKIDCITHPYPLLQNPLEEEGIRLYSQPDIIAMK LSAIADNGSRLKDFIDIAYLSTQYSFQEMLGFYVQKFPTSSPLRPLKGITYFDDIDHEET VVMLESTYSWQKIADRLQAMTAHQSKVFASPPLSPARKSPKIVVPSSPVQEQAQAILDAR QGQGSPALKTKQEVQSELKSSRHKL >gi|228306691|gb|ACLR01000246.1| GENE 14 12901 - 13230 96 109 aa, chain - ## HITS:1 COG:no KEGG:Coch_1598 NR:ns ## KEGG: Coch_1598 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 17 109 14 106 106 94 47.0 1e-18 MLYPIEQYIPHGDSQLISSSLLWEYDLTDFDWEKSKCIVVERIIERGRPEDYRGAINRYG GIENFREILKAVRHLSQKDIAFVCSFFKLNKEELLCYRRQQLRSERWNS >gi|228306691|gb|ACLR01000246.1| GENE 15 13706 - 14182 225 158 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471491|ref|ZP_04056272.1| ## NR: gi|228471491|ref|ZP_04056272.1| hypothetical protein PORUE0001_1935 [Porphyromonas uenonis 60-3] # 1 158 188 345 345 280 100.0 3e-74 MSEDHVALLSSSIEEMLNPKTATPIEGRLQPLNSNSISLAKLLKGVELSYEPNVKLLDAM QACHQFALTGYYTELVKVYDTALNKRLSTALSDPFQTVRKAQAEMVALAKQARQIVVPSS PVQEQAQAILNARGERNDNTLKDAQEEQVERKSQSHKL >gi|228306691|gb|ACLR01000246.1| GENE 16 14237 - 14419 84 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIFAYHIFKTQNLNGSFYTIQSRIDRQTAIKPLNFFYRRVTWRCSYSIITFYLFSITMFL >gi|228306691|gb|ACLR01000246.1| GENE 17 14756 - 16207 854 483 aa, chain - ## HITS:1 COG:no KEGG:PG1494 NR:ns ## KEGG: PG1494 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 116 455 29 378 437 151 32.0 6e-35 MSTTEYDNREFEVSPDNPSALDEQRAKEELSYGADNYILVAEDRSRVSYGDDVGDMQVVR SIANDGSIDGVSVSDLTDDTAQAVPKFEKEPSGQSVKTGKSGKPKPTIDKDYDIPLLEPF LRNFIRFAKNGNYRLWLVPVLSQGIKGISAGIDNLRQALSDPKNHGEYIKDSRVRPQDYL EAPTVTDGLEAKLASLGLSKQILEERGQLENLLSFKPTDLLPVHIKTGDIDIRTEGRLTL RTQPDGSESISVRCVRKELNLEAPYMCCSFTDQDKESLLETGHLGRVAQLKGADGREFSA YISVDEDTNTLVYVPTARVYIPQTISGVDLSPDQRATLRAGKPLSFSGVSAKGKEYTATI QVDACKRAMSFTFPPTDVKQVLGTRRADGVPTMISGQVLTKEAQDKLAKGETLYLEGLKN SRTKKSFNSYVSYDASTQRVRYSKYDPTDLTKQAQKREMRLIPNDKDAPKQNQSREQSKG RKV >gi|228306691|gb|ACLR01000246.1| GENE 18 16219 - 16674 227 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471490|ref|ZP_04056271.1| ## NR: gi|228471490|ref|ZP_04056271.1| hypothetical protein PORUE0001_1937 [Porphyromonas uenonis 60-3] # 38 151 1 114 114 213 100.0 5e-54 MSLDYKVRVTEEQFEVVLTELRARGSHFCAAPWSRKQMEEDYKKSGFTHIDFSTSGLFFE WTDASSPKEVISFEDFMDRLDADISSLRPLRKCHTYSGTFYNAPRQEVVVPSSPVQEQAQ AILNARGERNDNTLKNAQEEQEERKYQSLKL >gi|228306691|gb|ACLR01000246.1| GENE 19 16775 - 18640 668 621 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471495|ref|ZP_04056276.1| ## NR: gi|228471495|ref|ZP_04056276.1| hypothetical protein PORUE0001_1938 [Porphyromonas uenonis 60-3] # 1 621 1 621 621 1134 100.0 0 MDFTVYTTDNWQDRLEYIATKEGFNFTQDEDGDITLQKFSPYGQDFTIELIKPLDYRDAL DDLNAQLSSYDVNDEAMAWYGANRGEPRDLQDLLDDMQWCKNELQKLTDAGYYHLGFTPA DYFNEAVMKEALSRTFEETGLSDRSFSADMQEFLLDHMSRYDNPVTGVEDISTHGCGSGV LSDYSICATKEFYTKHIDDIEDFIYDIEDERGESITLDRPRYNSAVWLVTEQCASFVVDH LEENIQNTLEDWSEDLTKEQLEAFLQGNSNELIADHLEETRSFLEEDLEDEQEASLDANS EVLEMSYYYISPRGFSNEYTVLKADNTDASKEVIDRLLYEDATNPNFEASLLSKDSPYCK EYSEVLKAGELYDVGLSDQDLEPVHPIDIPYYLPTKSSLAFEEQLLAEHSLSLAENRCVL VSTNDLDSNNVPALGALSKISKAYPYPPSFNLKEYEGKFISLDVVYTPVYADKGVIDYTS KPAKELDDVVYYLSSDIRTPKQIEQLADNLCKDYPSSRLDKQELIPLLDAIAKTDDRKAV VALNKYVSDAEQKVANEVVDNIKRQYGYKELPLQSEAPRIVVPSSPVQEQAQAIFDARGG DVKSTQKQEQEAQVNKSSLKI >gi|228306691|gb|ACLR01000246.1| GENE 20 18675 - 20774 1323 699 aa, chain - ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 5 672 4 690 709 398 37.0 1e-110 MNNPVCIITEKPSVAMDIAKVLNVTHKSEGYLYNDQYKITWAYGHLVALADPQTYGFTSY AREELPMLPKPFKLVVRQVKKKDGKGYEEDDFARKQLNVIKQCFDSSERIIVATDAGREG ELIFRYIYYYLGCSKPFDRLWLSSMTDQAIRDAFTKLKEGQLYDNLYLAGKARSEADWLV GMNASRALTIASNGSGGLSLGRVQTPTLCMICDRYLSNKNFVKSPFWKINAQVKSGETTF TVSSPEPITNKGLADSKLYAVSNLTSLTVTKAERKSTSSQPPLLYDLTTLQKEANKQGFT AEQTLNIAQSLYEKKVTTYPRTGSRYIPKDVYDTMSYLLRQLPYQEYQIYAQGLIVAGLN PHSVDDSKITDHHAIITTGETADLTEDEAIIYKMIAMRMLEAVSPASNKELLSLTLSGGG EELVTTLSCIKKKGWRVVKGETTEDPDSDEVSLNSLPSIADGMELSLVQATLKEGETKPK PIYTEATLLGAMERAGKEIEDKEAREAMQDVGLGTPATRASIIEKLLRQNYAVRQKNQLI PTERGLVVYNLVKSRLIGNAELTGQWEKSLAEIEAGNLPPTTFNSQIEDYTKQITDELLS TSVSLGTNYICPLCHQESVRIYSKSMRCQNDGCQFSVWRTVAGVPLTEEHCKQLLSNGKT SLLKGLMSKAGKTFSAYLVLDPNTGKTSFEFPSNSRKNK >gi|228306691|gb|ACLR01000246.1| GENE 21 20780 - 23176 1019 798 aa, chain - ## HITS:1 COG:FN2118 KEGG:ns NR:ns ## COG: FN2118 COG2849 # Protein_GI_number: 19705408 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 540 708 75 243 245 125 35.0 4e-28 MKYGDRDQILQLTGGGLDIFQAYLPNVIGRKNFRSPFYDDKKASCAIYQDHSGVWRYKDF GNGGSGGDAFWFVGELFGYNLSSQFPKILAQIVQDLNLPLDITTQESLAKAPIRPQVSAP SSDQLISQPSMTDKYSVQSQPFTEDDLEFWGKYGINQETLERYGVSSLASFSSYSRKGNP YQLHYKSTEPMYCYQLGDSVKIYRPNSKVRFLNAGVRSSDYLFGYAQLPSKGEYVLLTGG EKDVLSLASHGFSAFCLNSETAYLSQTLLQGLSDRFDAVGVLYDMDDTGIRQSQKIIEDN PDIPNLFRVDLPLSGSKNEKDVSDFFSQGGNATALQDIIMRTIKQQDNSMDNLENFIDPN LSGNEIHKLKLTGVQEAWHDNGRLCSRTHYKRGKLDGLYESWYDNGQQCELANYRRGKLD GVHLGRHPNGNVSELCHYQNGLLHGEYFEYDESGTLQVHTHCYKGYENLSAWKESLTNKS VSPFTGKYEIWDDSLSPQPMAVFYMDKVSALEHQEQDLNDLPAQRIDTHVSESVIRSRKL TGVQEAYYDNGQISHRKFYKDGLAEGMGYSWHRNGQLKERSAYKAGRLDGVSLYYYDNGA LNVRETYKRGKLDGFCEEWYDNGLLAGRCSYKAGKLDGLFKRWHENGQLKKRLPFRAGLV DGLSETWYPNGCQQTRWNYKDDKLDGLCELWDGGGNLLSQTHYKDNKKNGLHLDYDPESG EMYHWILFENDLSVKSGKPEELEQLEAYKNQAPSIVVPSSPVQEQAQAILNAQRDNVPKV GQQAEARLTQQQEYKHKL >gi|228306691|gb|ACLR01000246.1| GENE 22 23268 - 23564 346 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471483|ref|ZP_04056264.1| ## NR: gi|228471483|ref|ZP_04056264.1| hypothetical protein PORUE0001_1941 [Porphyromonas uenonis 60-3] # 35 98 1 64 64 112 100.0 8e-24 MLHDDIFDCLVETETNISEFRHCQLPRIIELTKNMLNSDDWSDEDMQFLKQVYKMLDAVD LRLHIYQEWIRNTLDADEIQSLDLLRFTATYRNLLVPF >gi|228306691|gb|ACLR01000246.1| GENE 23 23581 - 24456 415 291 aa, chain - ## HITS:1 COG:mlr7992 KEGG:ns NR:ns ## COG: mlr7992 COG0270 # Protein_GI_number: 13476615 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Mesorhizobium loti # 5 112 60 172 390 63 32.0 3e-10 MDSFPIYGDITSLNGRNFKGAFDILCGGFPCQAFSYVARGQNISEKNLWPEMLRFVWESE APIVFAENVTLNAIRTASMDLESIGYRVKYCKLSCGELGADHRRDRYWLLAVKTPSALSK VNESLERLGKIHMGCWVTPFSELKNEVVTNRRAQLKAIGNAQAPLVAATAFRILAYRHKN QIRNSVKVLKEEINRFFTVQPTWIKDTYGENFGFVHTPTTMANYSAPSMMKHAGCRNFVE VFNRPTPANAEYLMGLPQGASTANSMSKKNMEIWLQKLRQATIQRDLSSEE >gi|228306691|gb|ACLR01000246.1| GENE 24 24607 - 24960 361 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471502|ref|ZP_04056283.1| ## NR: gi|228471502|ref|ZP_04056283.1| hypothetical protein PORUE0001_1943 [Porphyromonas uenonis 60-3] # 1 117 1 117 117 187 100.0 1e-46 MKLEELKKNLQLVNVEEKSLSELLRVLESIRNCQLILANSAQVIGSYKIAGTLDCDLCSE VEEAQNLLRELIYKQSGIYRDFARRLDKEVFRKLGIAEVYSDVTKEISRRLNNIESN >gi|228306691|gb|ACLR01000246.1| GENE 25 25368 - 25601 175 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVYTRALGYSWIPSLIEQATALQLSRPNTEPLLDDEASIEVRTILAIDLIGVRYLISSL CLIQGILLFGKNFQLLL >gi|228306691|gb|ACLR01000246.1| GENE 26 25981 - 26448 260 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471497|ref|ZP_04056278.1| ## NR: gi|228471497|ref|ZP_04056278.1| hypothetical protein PORUE0001_1945 [Porphyromonas uenonis 60-3] # 1 155 12 166 166 313 100.0 3e-84 MDSTLRQILAHIAYYLTNPRCKFGLLLCGTVGNGKTTMLHAIRELIFFTNNNGLWDVPYR LVSAPMYDAREIASISKDFQAFRKLKSLPLLFLDDLGKEPTERVEYGNITTPVVELLEYR YENMLSTFVSTNLTPSELGRKYQARIATDSMRCLK >gi|228306691|gb|ACLR01000246.1| GENE 27 26495 - 27013 -55 172 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228471501|ref|ZP_04056282.1| ## NR: gi|228471501|ref|ZP_04056282.1| hypothetical protein PORUE0001_1946 [Porphyromonas uenonis 60-3] # 1 172 29 200 200 318 100.0 6e-86 MTQLQPRAREAKFLGADDGQLSLTDVSPHKGLREQEALAFVDYFNSKLATKQANIPALRS LQGSRLAELNARLREYGEMPCWRLLTISCQARCSMVRMLEVGTPLSIGLSSLQTSLKYLK TIQRIFTSRPSQCDYLKIIRSSSRMHSDCYERKRLLHLVLTCPSRQRKPKVF Prediction of potential genes in microbial genomes Time: Fri May 27 10:34:49 2011 Seq name: gi|228306688|gb|ACLR01000247.1| Porphyromonas uenonis 60-3 deg1118640599649, whole genome shotgun sequence Length of sequence - 518 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 479 198 ## PG1435 integrase Predicted protein(s) >gi|228306688|gb|ACLR01000247.1| GENE 1 2 - 479 198 159 aa, chain - ## HITS:1 COG:no KEGG:PG1435 NR:ns ## KEGG: PG1435 # Name: not_defined # Def: integrase # Organism: P.gingivalis # Pathway: not_defined # 7 158 147 298 408 106 34.0 2e-22 MTLLQGYLGYQYGKDDLPLSAVQKDELSSYELYLKGEKNYTHNTAIKVLRFLRKAMERAV EEDLLMRVPFPKVVLRMQPTDRGFLDDSDLERLRSVELSNPKLLLVRDAFLFSCYTGLSY ADISRLVRDNIISMHGQSWVVLRRKKTGVLSTIPLMSVA Prediction of potential genes in microbial genomes Time: Fri May 27 10:34:52 2011 Seq name: gi|228306685|gb|ACLR01000248.1| Porphyromonas uenonis 60-3 deg1118640599693, whole genome shotgun sequence Length of sequence - 516 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 515 408 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|228306685|gb|ACLR01000248.1| GENE 1 65 - 515 408 150 aa, chain + ## HITS:1 COG:MT2881 KEGG:ns NR:ns ## COG: MT2881 COG2801 # Protein_GI_number: 15842353 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Mycobacterium tuberculosis CDC1551 # 40 150 123 234 294 87 40.0 1e-17 MLLRSRRRKRPPQTTKGVVNHGFQDHLNTTPKYIATDHCRLTVSDITYVKCLGGFAYLSL TMDAYSRIITGFDLQPTLSTEGPYNALKQTVDFYKKHGFDLKGLIFHSDRGCQYVSKQMT DYEASLGIVTSVTQTGNPLHNAMAERLNGI Prediction of potential genes in microbial genomes Time: Fri May 27 10:34:53 2011 Seq name: gi|228306683|gb|ACLR01000249.1| Porphyromonas uenonis 60-3 deg1118640599651, whole genome shotgun sequence Length of sequence - 524 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Fri May 27 10:34:53 2011 Seq name: gi|228306682|gb|ACLR01000250.1| Porphyromonas uenonis 60-3 deg1118640599757, whole genome shotgun sequence Length of sequence - 703 bp Number of predicted genes - 0