Prediction of potential genes in microbial genomes Time: Sat May 28 05:58:35 2011 Seq name: gi|281306619|gb|ADEF01000001.1| Prevotella timonensis CRIS 5C-B1 contig00034, whole genome shotgun sequence Length of sequence - 38240 bp Number of predicted genes - 41, with homology - 37 Number of transcription units - 22, operones - 11 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 252 - 311 11.3 1 1 Tu 1 . + CDS 440 - 883 217 ## PRU_0294 hypothetical protein + Term 895 - 943 -1.0 + Prom 915 - 974 8.3 2 2 Op 1 3/0.000 + CDS 1025 - 1585 463 ## COG1704 Uncharacterized conserved protein 3 2 Op 2 . + CDS 1633 - 2592 706 ## COG0501 Zn-dependent protease with chaperone function + Prom 2711 - 2770 2.0 4 3 Op 1 3/0.000 + CDS 2812 - 3129 312 ## COG3385 FOG: Transposase and inactivated derivatives 5 3 Op 2 . + CDS 3346 - 3975 356 ## COG3385 FOG: Transposase and inactivated derivatives + Term 4100 - 4139 -1.0 - Term 3967 - 4009 -0.1 6 4 Tu 1 . - CDS 4217 - 5482 538 ## gi|282879478|ref|ZP_06288212.1| hypothetical protein HMPREF9019_1098 + Prom 5548 - 5607 5.6 7 5 Op 1 3/0.000 + CDS 5741 - 6058 320 ## COG3385 FOG: Transposase and inactivated derivatives 8 5 Op 2 . + CDS 6275 - 6904 348 ## COG3385 FOG: Transposase and inactivated derivatives - Term 6954 - 7001 -0.1 9 6 Op 1 . - CDS 7074 - 8150 1031 ## COG0082 Chorismate synthase 10 6 Op 2 . - CDS 8196 - 8765 576 ## COG1047 FKBP-type peptidyl-prolyl cis-trans isomerases 2 11 7 Tu 1 . - CDS 9288 - 9395 62 ## - Prom 9473 - 9532 5.2 + Prom 9430 - 9489 9.1 12 8 Tu 1 . + CDS 9542 - 11764 1293 ## COG1404 Subtilisin-like serine proteases 13 9 Tu 1 . - CDS 11681 - 11854 77 ## - Prom 11900 - 11959 9.4 + Prom 11772 - 11831 6.4 14 10 Op 1 . + CDS 11938 - 12426 635 ## COG0716 Flavodoxins 15 10 Op 2 . + CDS 12464 - 12856 322 ## BVU_3218 hypothetical protein + Term 12941 - 12984 4.5 16 11 Tu 1 . - CDS 13321 - 13476 69 ## + Prom 13412 - 13471 6.6 17 12 Tu 1 . + CDS 13492 - 15504 1341 ## Phep_0938 hypothetical protein + Prom 15539 - 15598 4.0 18 13 Tu 1 . + CDS 15647 - 16303 367 ## gi|282879487|ref|ZP_06288221.1| hypothetical protein HMPREF9019_1107 - Term 16137 - 16183 -0.1 19 14 Tu 1 . - CDS 16300 - 16539 71 ## + Prom 16388 - 16447 5.5 20 15 Tu 1 . + CDS 16590 - 16934 281 ## BVU_0853 hypothetical protein 21 16 Tu 1 . + CDS 17050 - 17919 560 ## COG3464 Transposase and inactivated derivatives - TRNA 18044 - 18122 71.2 # His GTG 0 0 - Term 17986 - 18018 -0.7 22 17 Op 1 . - CDS 18100 - 18630 405 ## PRU_1556 preprotein translocase subunit SecG 23 17 Op 2 . - CDS 18670 - 19383 569 ## PRU_1557 hypothetical protein 24 17 Op 3 . - CDS 19407 - 19961 568 ## PRU_1558 putative lipoprotein 25 17 Op 4 . - CDS 19942 - 21207 1052 ## COG3604 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 26 17 Op 5 . - CDS 21267 - 22310 828 ## PRU_1560 hypothetical protein 27 17 Op 6 . - CDS 22314 - 23426 537 ## PROTEIN SUPPORTED gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 28 17 Op 7 . - CDS 23520 - 24497 523 ## BVU_2599 hypothetical protein 29 17 Op 8 . - CDS 24490 - 25503 722 ## COG0820 Predicted Fe-S-cluster redox enzyme - Prom 25590 - 25649 5.9 - Term 25547 - 25588 -1.0 30 18 Op 1 1/0.000 - CDS 25766 - 26791 581 ## COG3440 Predicted restriction endonuclease 31 18 Op 2 . - CDS 26788 - 28092 552 ## COG0270 Site-specific DNA methylase - Prom 28140 - 28199 4.0 + Prom 28871 - 28930 3.6 32 19 Op 1 . + CDS 28959 - 31346 1589 ## COG2385 Sporulation protein and related proteins 33 19 Op 2 . + CDS 31440 - 32747 923 ## PRU_1564 putative transporter 34 20 Op 1 . - CDS 32907 - 33818 627 ## PRU_1783 putative lipoprotein - Prom 33846 - 33905 6.0 - Term 33977 - 34025 -0.7 35 20 Op 2 . - CDS 34049 - 34552 493 ## COG1522 Transcriptional regulators - Prom 34796 - 34855 11.9 36 21 Op 1 . - CDS 34905 - 35372 411 ## BVU_1945 hypothetical protein 37 21 Op 2 . - CDS 35369 - 35899 315 ## PRU_1820 ExbD/TolR family biopolymer transport protein 38 21 Op 3 . - CDS 35886 - 36410 267 ## gi|282879506|ref|ZP_06288240.1| conserved hypothetical protein 39 21 Op 4 . - CDS 36412 - 37167 660 ## COG0811 Biopolymer transport proteins - Prom 37332 - 37391 7.4 40 22 Op 1 . - CDS 37464 - 38069 245 ## PROTEIN SUPPORTED gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 41 22 Op 2 . - CDS 38075 - 38239 147 ## gi|282878838|ref|ZP_06287605.1| putative queuosine biosynthesis protein QueD Predicted protein(s) >gi|281306619|gb|ADEF01000001.1| GENE 1 440 - 883 217 147 aa, chain + ## HITS:1 COG:no KEGG:PRU_0294 NR:ns ## KEGG: PRU_0294 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 16 142 3 131 136 156 59.0 3e-37 MERIRKIALVALTILLFFPVFAFAGQKGNIRTSSSFNWGPVMDAIIHVESRGKANAKSGN SVGVLQITPILVKECNNILKQRRSKKRYKLSDRWSISKSKEMFLLIQSAHNPSNNIEQAI RSWNGGPNYSIRATHQYFRKVMRILSD >gi|281306619|gb|ADEF01000001.1| GENE 2 1025 - 1585 463 186 aa, chain + ## HITS:1 COG:AGc1138 KEGG:ns NR:ns ## COG: AGc1138 COG1704 # Protein_GI_number: 15887982 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 20 170 18 170 183 148 51.0 5e-36 MVVGIIIAVLILLVLFCAGIYNNLVRLRNNRENAFANIDVQLKQRADLIPQLVSTVKGYA AHEKEVLQRVTEARTMGVNATTINEKMQADNMLTQALSGLRISLEAYPELKANQNFLQLQ NEISDIENKLSAVRRYFNTATRELNNAVQTFPSNIFANMFGFKKEPMYEIAPTQRTEMEQ APQINF >gi|281306619|gb|ADEF01000001.1| GENE 3 1633 - 2592 706 319 aa, chain + ## HITS:1 COG:AGc5123 KEGG:ns NR:ns ## COG: AGc5123 COG0501 # Protein_GI_number: 15890072 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 69 316 44 275 321 156 35.0 5e-38 MSVLLLLMFPMIILGMIWVFLALLNYFGNGYYNEYGEVVYALDVASVNYYFITTIPWVVL GVGIWFAIAYFTNVAMIQRATGARSLERRENPRVYNIMENLCMTCGMAMPQIHVVDDPQL NAFASGINDKSYTVTLTTGIINRLNDEELKGVVAHELTHIRNKDTRLLVVSIIFVGIIST VMSLVVRMMYQTMWFGGSVRRSKDERGTGLSILIILFVGVICCAIAYFFTLITRFAISRK REYMADAGGAELCGNPLALADALRKISSDPGLDQVKQEDVAQLFIVHPDQMVSGIMGFMN SLFATHPDTKKRIAILEQF >gi|281306619|gb|ADEF01000001.1| GENE 4 2812 - 3129 312 105 aa, chain + ## HITS:1 COG:SMb20766 KEGG:ns NR:ns ## COG: SMb20766 COG3385 # Protein_GI_number: 16265206 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 7 102 7 101 387 71 39.0 3e-13 MFQDKYVFAQLTAFLNRTQFNNYVRKYDGNRYVKHFTCWNQLLAMMFGQLSNRESLRDLI VAFEAHRAKQYHLGLGRKPIAKTTFASANQNRDYRIFEDFAFYMM >gi|281306619|gb|ADEF01000001.1| GENE 5 3346 - 3975 356 209 aa, chain + ## HITS:1 COG:BH0691 KEGG:ns NR:ns ## COG: BH0691 COG3385 # Protein_GI_number: 15613254 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 12 178 190 354 371 101 36.0 9e-22 MKEIPYESGSYYVFDRGYNAFKELFKIHQHESFFVVRAKKNLQYKCCRWRRRLPKNILTD AVIEFTEYNSYRKYPEKLRLVKFYDEEQDREFAFLPNAFHLTAPEIANLYKNRWQIELFF KWLKQHLKIKKFWGTTENAVRIQISSAIIAYCLVATVQHDFQLKRSTYEVLQILSISLMD KTPLVDLFERTDFNNVKELDCPLFPGVFD >gi|281306619|gb|ADEF01000001.1| GENE 6 4217 - 5482 538 421 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879478|ref|ZP_06288212.1| ## NR: gi|282879478|ref|ZP_06288212.1| hypothetical protein HMPREF9019_1098 [Prevotella timonensis CRIS 5C-B1] # 1 421 42 462 462 848 100.0 0 MGQLYMKFDSVTPTMALCHTVFSAISKNQNRLAIEALEKNLLPNWNQYPSDMLFLFQKLI QLYIEEGKYTEAHTYSNWFKEQYYPTIKKQGISEEYSQQIFQFINNMDKFLDEAVLIPPM RVVRKKGNQSVNFTIDPLIMSQIEVNGSKKDVFWDTGVPVPMYLTHQVADTLRIAYGKDS LDTSMGRHPIVNIDSIVIGNYSFYNVPTLIIDMANPIPYLSEHKMSAKKLRKAQRVYDKF NRPMIGLPIIKRLGRLEVDWKHKLLSFPHDTLPKSDWEEQIQLTDYKYPRLTTPIMINNM NVMGIIDSGFDSYMLMRKDFYQRYSNQFPVVKNKQDRRLTLTVSGAEDTLNIHLHHPTLV YGGRVIQPKEKINFIGDGYTEKSWDMLMGLHFFKSLGQNIIFDFKDMKLKVWKKSINFLR Q >gi|281306619|gb|ADEF01000001.1| GENE 7 5741 - 6058 320 105 aa, chain + ## HITS:1 COG:SMb20766 KEGG:ns NR:ns ## COG: SMb20766 COG3385 # Protein_GI_number: 16265206 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Sinorhizobium meliloti # 7 102 7 101 387 70 38.0 1e-12 MFQDKYVFAQLTAFLNRIQFNNYVRKYDGNRYVKHFTCWNQLLSMMFGQLSNRESLRDLI VAFEAHRAKQYHLGLGRKPIAKTTFASANQNRDYRIFEDFAFYMM >gi|281306619|gb|ADEF01000001.1| GENE 8 6275 - 6904 348 209 aa, chain + ## HITS:1 COG:BH0691 KEGG:ns NR:ns ## COG: BH0691 COG3385 # Protein_GI_number: 15613254 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 12 178 190 354 371 100 35.0 2e-21 MKEIPYVSGSYYVFDRRYNAFKELFKIHQHESFFVVRAKKNLQYKCCRWRRRLPKNILTD AVIEFTEYNSYRKYPEKLRLVKFYDEEQDREFAFLTNAFHLTAPEIANLYKNRWQIELFF KWLKQHLKIKKFWGTTENAVRIKISLAIIAYCLVAIVQHDFQLKRSTYEVLQILSISLMD KTPLVDLFERTDFNNVKELDCPLFPGLFD >gi|281306619|gb|ADEF01000001.1| GENE 9 7074 - 8150 1031 358 aa, chain - ## HITS:1 COG:all0797 KEGG:ns NR:ns ## COG: all0797 COG0082 # Protein_GI_number: 17228292 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Nostoc sp. PCC 7120 # 1 355 1 357 362 354 52.0 2e-97 MRNTFGHLFTLTTFGESHGEAVGGVIDGMPPGIVIDKDFVQHELNRRRPGQSDITTNRQE HDVVSFLSGIFEGKSTGAPIAFMVENTNQHTKDYESLKNLYRPSHADYTYQQKYGCRDYR GGGRTSARITLSRCVAGALAKLVLQKHGIQIQAYVSQVGQIALQQDYRLYNLDKTEENAV RCPDEEKAKEMEALIRQTKLDGNTIGGVVTCVIKGCPVGLGEPEFGKLHAQLGAAMLSIN AAKGFEYGEGFACATQRGSEMNDSFSMKNGNIHTKTNHSGGILGGISNGEDIYFRVAFKP VATLLQSQQTVDVAGSEVTYKAQGRHDSCVVPRAVPIVEAMAAMVLLDSWMLHQAILR >gi|281306619|gb|ADEF01000001.1| GENE 10 8196 - 8765 576 189 aa, chain - ## HITS:1 COG:FN1875 KEGG:ns NR:ns ## COG: FN1875 COG1047 # Protein_GI_number: 19705180 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 2 # Organism: Fusobacterium nucleatum # 1 156 1 149 164 79 33.0 3e-15 MEKKKNQFITVTYQLYTLNNNKKELVEEATAEVPFQFISGFGITLDKFENQLIDLQQGDE FNIKLTPEQAYGSFKEENIFDLEKEIFTVNGKFDEENIYEGAVVPLQNEEGTRFMARVMD ISDVSVKVDLNHPLAGKELEFNGKVIENREATNEEIAAMVSQMSGGGCQCGGGCSGGCCH DSNGCGGHC >gi|281306619|gb|ADEF01000001.1| GENE 11 9288 - 9395 62 35 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLHGKLINAEFSLQSASQNSRKNNQQQSWSQIREI >gi|281306619|gb|ADEF01000001.1| GENE 12 9542 - 11764 1293 740 aa, chain + ## HITS:1 COG:CAC3245 KEGG:ns NR:ns ## COG: CAC3245 COG1404 # Protein_GI_number: 15896490 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Clostridium acetobutylicum # 94 643 27 518 1118 85 24.0 3e-16 MKRLQFFFIIAMFCTVCVSAQHANYAKMSTMVRQLALQQELIGQQGDVEGTRSKSICSNQ SQELCAFVKVRKDAQRVFQEHDCKSLAQFGDIFIVSVPLQQLARLSLEKYVDRIEAHRSN GLHTDSLAYCLDAMPVYAGTSPLPQAYTGRGVVVGVQDVGFDLTHPNFFDTIATNYRIQR FWDQLSVDTLKNKMYVGASYEGRAEILAYAHSRDGLIQTHGTHTLGIAAGSGYNSAYRGM AYESDICLVSNFVVGDEALVDSANRYKYTYATDALGFKYIMDYAKYSNQPCVISFSEGSH QDFHGDDVLYNAVLDSLSGPGRIIIASAGNDGQVKSYFHKPIGQVGMGTFVEGRPDNVYV TLKSASPFQIRFTSYDDTKHSHEVFTQDILRCKDSIYVDTVLLGNKQYVFSMVGYKSCYD SAELVYDVRMWSKSEIGHAVPFSFEILGAQADVEVFRMGGVWTANQLDERLSAGECTHNI HSPASLSSVIGVGATSYRTGITNYLGEWRPYNQGVDGVRGAYSSVGPTYDGRVKPDVMAP GTNIISSYSSYYLEKNPKANDIKSDVAHFEFNGRTYAWNSNAGTSMSTPAVAGAVALWLQ AKPTLTREDIMDVFAKTCTHYDTSLTYPNNWYGYGQIDVYKGLLYILGVSGVKGISSHQP AGVQFEVRADRKIEIKLKEPSCHHFSVCVYSTSGVLLERKSFDAGFSSYLLDVSSYPRGV YVIQLNSSNPFVKGSTLIRI >gi|281306619|gb|ADEF01000001.1| GENE 13 11681 - 11854 77 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVFKYYVLIKTKHIMKPIYIKMIIRFTGTPLYSNKSRAFHERIRAIQLDNIHPSGIR >gi|281306619|gb|ADEF01000001.1| GENE 14 11938 - 12426 635 162 aa, chain + ## HITS:1 COG:Cj1382c KEGG:ns NR:ns ## COG: Cj1382c COG0716 # Protein_GI_number: 15792705 # Func_class: C Energy production and conversion # Function: Flavodoxins # Organism: Campylobacter jejuni # 6 160 5 160 163 152 56.0 3e-37 MKPTVVIYGSSTGTCQAIAEKIASKLGVEAIDVANLNEDVLKSHDNLILGTSTWGSGEMQ DDWYSGVEVLKDVDLSNKTVALFGCGDAESYSDTFCGGMAELYHAVEGAHVVGAVSTDGY TFDDSDAVIDGKFVGLALDDLNEEDKTDERIDAWLADIKPSL >gi|281306619|gb|ADEF01000001.1| GENE 15 12464 - 12856 322 130 aa, chain + ## HITS:1 COG:no KEGG:BVU_3218 NR:ns ## KEGG: BVU_3218 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 8 113 8 113 114 162 69.0 4e-39 MKTIGTLPAELKVLMNHIYEYKKGVRQMVLYTFHKKYETFAVERLASQHINYLIQPVGNN SLNLFFGTEECIDAVRFIIHKPLNELTPEEDFILGAMLGYDIRLQCERYCKKKCKKCQVA CADCDGIIKQ >gi|281306619|gb|ADEF01000001.1| GENE 16 13321 - 13476 69 51 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLYILSENFIVLNYNPNLTIYRFIVFSHLLPKQFSNNKFNNRYDKDIDKI >gi|281306619|gb|ADEF01000001.1| GENE 17 13492 - 15504 1341 670 aa, chain + ## HITS:1 COG:no KEGG:Phep_0938 NR:ns ## KEGG: Phep_0938 # Name: not_defined # Def: hypothetical protein # Organism: P.heparinus # Pathway: not_defined # 1 667 1 671 672 494 40.0 1e-138 MDIREFAQDFLNEVKASVEMNGTDYDQELASLIFDYMEDNGEVNNPEICSFQKTRTRITA YDYNDEAESLDLFYLIKADTLLGKINNHKIQQGYNYLMAFYYEAMHDQLFKGQNVQPTDE IVEVAKLVKSTKGNISQLRVYIITDGLTDPTASIAPEENEEEGFVIEYNIWDMWRVYQQH NIKTGKEKVEIDFAINYNTELQCLKMNEGNPFVEAYLAIIPGLVLAKIYKQYQQVLLEKN VRTFLQFKGKVNKGIRKTLREKPDMFFSYNNGISTTATGIEIEKRGRAFFIKRLYNWQIV NGAQTTASIAACINDKDVDLTKVFVLMKISVINDKENSENIIKEISTSANSQTAIKNSDF SANDPYLVGLENMSRSEWVPNGKQRPICKWYFERTRGQYFDQLAQLNGYNEKKIKIEYPK RQKITKTDIAKYEMAWNQQPFDVCRGAEKNYALFVATIKKEKPTVTTTYFKKLIAKGILF NTIDAIVKSKKLGGYKANMNAYVMASISFLSNKKLDFSYIWEHQQVQQSVIDRITELIPI VWHHFTDNIQNVDVGYWSKRADCWNRLKLILEKLNKIEERALLTESNDGNLHLNEVQQGC ISDAEAIEPTFWFALVNWAKSHDVLTPMEIKAAFNFGTMRSRNRKINSLKQAQFALKIVD KAQEMGFKEK >gi|281306619|gb|ADEF01000001.1| GENE 18 15647 - 16303 367 218 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879487|ref|ZP_06288221.1| ## NR: gi|282879487|ref|ZP_06288221.1| hypothetical protein HMPREF9019_1107 [Prevotella timonensis CRIS 5C-B1] # 1 218 1 218 218 436 100.0 1e-121 MEEKERQRSVSKKLRVIFPDGETICYSSSKVTYVETLKKIGTANFDEINIEMCHLPLFTK EIYPQYKGDMEMVDNGWYVNTRGGVYNKAAQLKIISEQFNIGLTVDVSADFKGERVSRGS KNFLVLQITFPDGTVIGEENTTETFMQCVWKIGIEKVRQLNLLHGGKPLITHNKQYNNQI QIDSNKWLLVPSATKDKVKLLKVMNIMLHLNMDILFIS >gi|281306619|gb|ADEF01000001.1| GENE 19 16300 - 16539 71 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQLGFTTDPLFHIFDRKVHQKSFSRTFFKEKNIIFDYLWGFIKEISRNSLSKQIELEALL ADIIDLMTIIVIPYMLPPN >gi|281306619|gb|ADEF01000001.1| GENE 20 16590 - 16934 281 114 aa, chain + ## HITS:1 COG:no KEGG:BVU_0853 NR:ns ## KEGG: BVU_0853 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 114 1 114 116 113 48.0 2e-24 MKTEQLLRCIFPEILADYFDVIDIQESISQIDFWLDERNFMEKADRKAGTVSSYGFTAER VVQDFPLRGKPVYLHVRRRKWRDSSTGEIFSYSYDDLTAEGSKLSPEFVSFLKE >gi|281306619|gb|ADEF01000001.1| GENE 21 17050 - 17919 560 289 aa, chain + ## HITS:1 COG:MA3988 KEGG:ns NR:ns ## COG: MA3988 COG3464 # Protein_GI_number: 20092782 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 18 281 147 378 394 73 23.0 4e-13 MSHAGDWLLFDENLGESLSIDETCLSSGEVYTFLTNKAGKGGRGTLVAVVRGTKAEDVIR VLEKIDLSKRKTVKEITLDLSSSMMIIARTVFPKALITSDRFHVQKLYYDALDDMRIAYR WMARDRENEEMKEAKAKNETYKPFRYSNGDTRKQLLARAKFILTKHKSKWTESQRLRAEI IFENYPELKKAYDLAMELTDIYNAKSIKDAARLKLAKWFNEIEKLGVDNFYTVIDTFKNH YDTILNFFVNRATNANAESFNAKVKAFRAQFRGVTDIPFFLYRPMKLCA >gi|281306619|gb|ADEF01000001.1| GENE 22 18100 - 18630 405 176 aa, chain - ## HITS:1 COG:no KEGG:PRU_1556 NR:ns ## KEGG: PRU_1556 # Name: secG # Def: preprotein translocase subunit SecG # Organism: P.ruminicola # Pathway: Protein export [PATH:pru03060]; Bacterial secretion system [PATH:pru03070] # 2 107 1 104 126 124 64.0 1e-27 MMYTLFVGLIVLASILMVVIVVIQESKGGGLASNFSSSNAIMGVRKTTDVIEKTTWGLAI FMVVLSVACAYVVPRASSEQSVLEKTATETQTTNPNTTPGFGASEQQAPVAGSQNATPAN QGTQQAPATPKAPVAPAKIKKIKSKRFICIIRINPLPLHSLLNKKSFINGGRSSVG >gi|281306619|gb|ADEF01000001.1| GENE 23 18670 - 19383 569 237 aa, chain - ## HITS:1 COG:no KEGG:PRU_1557 NR:ns ## KEGG: PRU_1557 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 13 227 1 223 246 195 57.0 1e-48 MELSRLIQHPELMDKETLYDLRSLLALHPYYQTVRLLMLKNLYLLHDATFDDELRRAAVY ITDRKVLFNLIEAAHYRFNKPSTGEKQPPVEEIGDNRTISLIDNFLETVPVEEEETPQKR KPTPADAAIDYVSYLLEVESEEEHMANAASPHLKGQDLIDSFIQKNGDGRIQLNDTPEYL PEIDEDKETPSEEGYFTETLAKIYIKQGRYEQALEIIQRLNLNFPKKIVTLQTKYVF >gi|281306619|gb|ADEF01000001.1| GENE 24 19407 - 19961 568 184 aa, chain - ## HITS:1 COG:no KEGG:PRU_1558 NR:ns ## KEGG: PRU_1558 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 30 184 18 172 172 242 75.0 4e-63 MDLRKNKIVQLCEIQHLYCVVFSCLLLSCLLVGCAVSYKFNGASIDYTKTKTIQISDFPI RSAYVWGPMAPMFNNELKDMFANHTKLSQVRRNGDLKIEGEIVSYTQRNKSVSSEGHSAQ TELTITVNVRFTNNKNHTEDFERQFSSAKSYGTTKNLNSVQEELVSQMVKDLADQIFNAT VANW >gi|281306619|gb|ADEF01000001.1| GENE 25 19942 - 21207 1052 421 aa, chain - ## HITS:1 COG:aq_218 KEGG:ns NR:ns ## COG: aq_218 COG3604 # Protein_GI_number: 15605774 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains # Organism: Aquifex aeolicus # 4 314 181 493 506 238 40.0 2e-62 MNTSELQKIKQRYSIVGNSDGLNHALDVALQVAPTDLSVLIIGESGVGKEIFPRVIHDHS PRKRERYFAVNCGSIPEGTIDSELFGHEKGSFTGAIGEREGYFGIANKGTIFLDEVGELP LATQARLLRVLETGEYIRVGGQEVRKTDVRIVAATNVNMPKAISEGRFREDLYYRLNTIP IQIPPLRNRGEDIILLFRLFSMQMAEKYRLPKITLTEDAKQLMLKYKWPGNVRQLKNITE QMSVLVQDREIDAKLLSNFIPQDRESTQLATINTHGSHSYENEREILYKILYELQGNVSE LRRDLTSLRKQLDHANNVHSGLTYPNQVHALEGSVTSLTDLSHQQNMPSNSTVISRAVDS EDAIVEEVKEPESLNLNDLGRQMVEKALERNGGNRKKAAKELGISDRTLYRRIKQYGLEK K >gi|281306619|gb|ADEF01000001.1| GENE 26 21267 - 22310 828 347 aa, chain - ## HITS:1 COG:no KEGG:PRU_1560 NR:ns ## KEGG: PRU_1560 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 346 1 334 334 404 60.0 1e-111 MKKKYQNAFFIFGLCVLLFMITQLNFGEVWEGVRHAGYWFFAILVLWVFLYLFNTGAWYL IIKSCVSEKSFQNDEKGFATSNANNNKNVGFWWLYKITVSGFALNYATPGGLMGGEPYRI MELSPKIGTEAASSSVILYVMTHIFSHFCFWVICIFLYLFTQSLSLGMGVLLASAGVFCG LGLWFFMVGYQKGLAVRMMKFLRHIPLVKKWAIPFVDKHRNQLDTIDCQIAALHKQNPKT FVAAVGLEIACRFCSALEVMFILMVLTPSVSYLNCVLVIAFTTLFANLLFFMPLQLGGRE GGFLMSVSKLGMTASAGIFVALLVRLRELIWTGIGLLLIKFDKKQKD >gi|281306619|gb|ADEF01000001.1| GENE 27 22314 - 23426 537 370 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163786851|ref|ZP_02181299.1| 50S ribosomal protein L32 [Flavobacteriales bacterium ALC-1] # 6 339 7 343 346 211 32 5e-54 MNNRKIRVAITHGDTNGIGYELIFKTFSSPEMLELCTPIIYGSPMVAAYHRKALGIQANF SIVNNTDEIKDGRLNLLTCFEDEVKVELGTPTEESGRAAIRALDRAMTDYREGVYDVLVC APIGTNNLKVGGLEFKNLAHYLQTCLGEGHEAIPVFMNDFLRVALVSNHLLMKDAMEDIK EQNLINRATVLCETMRRDMRVSSPRIAVLSLNPTADGIEEKEVITPAITKLTEAGVYAYG PYPAEEFFGSNQYEAFDAILSMHYEQAILPFKTLTIDEGVCLIANLPLVCTTTNDNPEFA KAGAGVMDEQPMRQAVYLAIDAWRNRMSFEEPLKNPLPKLYHERKENRDRGRLNGVKRND KDNQKLQEAE >gi|281306619|gb|ADEF01000001.1| GENE 28 23520 - 24497 523 325 aa, chain - ## HITS:1 COG:no KEGG:BVU_2599 NR:ns ## KEGG: BVU_2599 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 24 323 24 335 354 167 32.0 4e-40 MRKEWIWHFSLLCLVMGGVTACRQQKTVLPASTQQPYEILVVGDIDSLLYHCLSVPTVGL PQVEPTFDVTCVKTGDFDAQQRLMRQIIVVRQHQEERNKPAISHERNRYAQPQLVMYIDV NSKKELQRICENMGKEIRQVFIAQEYEQNILHLRQNHEVKTAQKVQRMFGYRLMLPADMQ SYKVGKNFLWLSNNAVQGLQNICVYAIQGLKQPTLQQTDSVLQANIKGETDENFMQTVRA SMQEETFFFHQKRQNWQRGQWEMCGDMMGGPLVRKVVIDSTERQAVVFDAFVYAPEGKKR NRMRALEASLLTIQKTNKNRKEEQQ >gi|281306619|gb|ADEF01000001.1| GENE 29 24490 - 25503 722 337 aa, chain - ## HITS:1 COG:NMB1308 KEGG:ns NR:ns ## COG: NMB1308 COG0820 # Protein_GI_number: 15677174 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Neisseria meningitidis MC58 # 7 328 9 342 364 249 38.0 6e-66 MGMTLSELQEVVHHLNMPTFTAGQIAKWLYLQQVTSIDEMTNLSKNNRQILQESFEIGCM KPLDAQYSKDGTIKYLFPTASGNLVETVYIPDQDRATLCVSSQVGCKMNCLFCQTGKQGF EGNLTYTDILNQIYSLPEREKLTNIVFMGQGEPMDNIDNVLRATQILTAPYGYAWSPKRI TVSSVGVKGKLKRFLDESDCHVAISLHSAIPEQRRELMPAEKAMPIQEIVELLREYDFAH QRRLSFEYIVFDGENDSIRHAQKVVELLRGLDCRVNLIRFHQIPNVSLRGTDTATMERFR DYLTSHGIFTTIRASRGQDIFAACGLLSTAKKKTTHA >gi|281306619|gb|ADEF01000001.1| GENE 30 25766 - 26791 581 341 aa, chain - ## HITS:1 COG:NMA1036 KEGG:ns NR:ns ## COG: NMA1036 COG3440 # Protein_GI_number: 15793992 # Func_class: V Defense mechanisms # Function: Predicted restriction endonuclease # Organism: Neisseria meningitidis Z2491 # 19 341 23 366 372 148 34.0 1e-35 MIQLGGEKFNLVDVFPKVLTVPDSFVVRNNKIQTTTDRAKESHGEAKLYIASKDTMREFY GQEGFHAICFMLKQDLVNYLNTLKIEYLNPSQNYRGMENFSVLWEERMNKINSLEDEIIT FEISDQYQIKGPRGYVNSPDMGYQLIRELSLPLVSYILVKKLSDTTGSELYYWKLFVDFE AIEQMKSIPTVFTYGKSKLQTQISEEAEKQIEEEVKSIKRGRDGQQKYREKLLEQCPFCP FTMVADDRLLIASHIKPWAIANEKERIDPYNGYMLTPTYDRLFDKGFITFTEDRHVHISN FLSSRTCKQLGLEDDKFIQMLPMDKKRIAYLEFHRKTVFKD >gi|281306619|gb|ADEF01000001.1| GENE 31 26788 - 28092 552 434 aa, chain - ## HITS:1 COG:NMB0826 KEGG:ns NR:ns ## COG: NMB0826 COG0270 # Protein_GI_number: 15676724 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Neisseria meningitidis MC58 # 15 433 3 411 411 562 65.0 1e-160 MTTVEQHITESSKRISHIKSLVKEKAEDMILIPDSQATPLSRGKSWKDLEFSNPERTIRL GTMFSGIGAIEHALQRLRLKHHIVFAGDIDANCKKSYFANYDIKEKDWFNDARTFDARKY RGQIDLLVGGAPCQAFSMVGKRLGFEDARGTLFYEFARVIKETQPKVFIFENVKGLINHD KGRTWMVMHSIFADLGYQVNYRVLNSKDYGIPQHRERIFCIGFHTPVKFAFPAPIPLEYK MYDFLEDYVDTKYFLKEKGIKFVTSHKNHTKCYTQINGDIALCQKRNQQFNWHGDFVFHP MAIGEIPEEDFDEFIFNVKEVEEKYYLSEKLRNYVLSSGTKNFKTRIETDLDIARPLLQS MHKMHRAGVDNYVTHKGRIRKLTPRECLRLMGFKDTFNIVVSNTSAYQQAGNSIVVDVLI ALLKQMDITKYGEL >gi|281306619|gb|ADEF01000001.1| GENE 32 28959 - 31346 1589 795 aa, chain + ## HITS:1 COG:sll1283 KEGG:ns NR:ns ## COG: sll1283 COG2385 # Protein_GI_number: 16329811 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Sporulation protein and related proteins # Organism: Synechocystis # 439 793 127 389 391 110 28.0 1e-23 MNGKTNQSSISDLNKEKHSTSGTATLKANDLSLEVFVEEQLKQWNDARQRFNELQQVETK DVEVGSLHMKVQYNPARMVSTGAKIDKKALAARPCFLCEKNRPAVQMKQVIDDKFELLIN PFPILPQHFTIPLRQHQPQQIRKNYTELHRLLSIFPDLMFFYNGPKCGASAPDHMHFQGG SANVLPLMLDWEVLAQSLKPLTVLNVEESLSLISGYPCPAFVIQSRSEAADEKLFQQLYN ALPLYDDDTEPMLNIVSWRREDNFISVIFPRKKHRPACYFAQGDQQMLISPGALDMSGLL ITPRLQDFEKISGQQIEEILREMTLSQDEIKQVIAKLTSTTNPQNSTLKCIVNQREPKVS VGIVGAETILFSLNQNFLAKGEVVNGEQEVQLVDGAIKWKGNYYRELTFVPQSQEGTFSL NDVTIGVNFHWERKETQTFYGTLRLVVEGGKIFAINDISVERYLESVISSEMKATSSLEL LKAHAVISRSWLLAQIEKRQHLEEATTGFFSFIKKEDELIRWYDREDHTLFDVCADDHCQ RYQGITTVPNQYVSEAIKQTKGQVLMYENEICDARFSKCCGGISEEYPYCWENISKPYLR AVRDMPNKAKEQPDILPDLTNEENAEKWIRTTPEAFCHTSDQKVLAQVLNDYDQETTDFY RWKVTYSQAKLKSLIEERTKKTFGDILDLIALERGKSGRISRLKIVGSLLTFTIGKELEI RRTLSDSHLYSSAFVVDKKDVINGIPQQFVLTGAGWGHGVGLCQIGAAVMGEEGYTYDEI LAHYYRDAVLQKLYE >gi|281306619|gb|ADEF01000001.1| GENE 33 31440 - 32747 923 435 aa, chain + ## HITS:1 COG:no KEGG:PRU_1564 NR:ns ## KEGG: PRU_1564 # Name: not_defined # Def: putative transporter # Organism: P.ruminicola # Pathway: not_defined # 22 406 6 391 422 227 36.0 6e-58 MKEMSRMIFNSPLEQVTIDRLPWKWMPTLYLFKGLSYAVLLFTSLVMLKRLGYQNSEITF YIGCTMLPWMFRPVLSIFVHKGYFNKLWILATEMINVICIAAIGYTITQQSWTNYTVLLY VILMSSNVFHDIASDKYTLTSIRCQQVSLLRIFKRLVYRLALLIAVGIVCMVAGNLEVVT RLIRASWSTAYYLLSAFLFVLSVWHVCLLPRFTRSYRERDILLSDMFYACLNTSADLIRT PSSWPGVLFLVCYLLPTNLLLPVSMLFQLDLGSSGGLGLSPQEFGYAYGTVGVFGLLTGD ILGIWLVHRYGLKKLLLLMALAILVPSLVFIHLSFALPTNFTWICWCSFIQQLCYGFGSY AYLHFLVYYSEVKRFSTFMLCVALAAVAMAIPFILSGTLQMALGYRRFFMLTALCGIATL TATLLVMSVYRKETF >gi|281306619|gb|ADEF01000001.1| GENE 34 32907 - 33818 627 303 aa, chain - ## HITS:1 COG:no KEGG:PRU_1783 NR:ns ## KEGG: PRU_1783 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 18 280 10 267 291 135 31.0 2e-30 MYCTMMKNLNCTKLIVALFALCFVACEKPVLNDDSSQENPTSEDLYHLTFRMSHYEQIPF EEGLKLSRSTNITKMCTRISLAIFKEGTKVKAIHQSQKDTNFGVIEANLPVGSYQIVAIA HSGDGSATITSPEAISFPKNKLTDTFYYFQNITVGENKTYDLEMKRAVAMFRLITTDKIP DAVQKIKFYYTGGSSTFNAVTGYGCKNSRQTEERSIAKEQRSGQGTFDVFTFPHEKANAL KMTVSALNATGDIITKHEFLEVPVKPNQITQYKGAFFQNTSSVEANHFTFFVNEQWTQQE YSY >gi|281306619|gb|ADEF01000001.1| GENE 35 34049 - 34552 493 167 aa, chain - ## HITS:1 COG:HI0563 KEGG:ns NR:ns ## COG: HI0563 COG1522 # Protein_GI_number: 16272506 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Haemophilus influenzae # 4 149 2 148 150 115 38.0 3e-26 MGHHNLDALDKKILTMIAEDARTPFLEVARACNVSGAAIHQRVQKLINLGVIKGSQFIFD PEKIGYETCAYIGLHLKDPNDFDRVAEELQKIPEIVECHCTTGDFDLFVKLYVMNNHHLM SIIHDKLQPLGLSGSETMISFRTVIDRQLPVSQIQIETKSSELEEED >gi|281306619|gb|ADEF01000001.1| GENE 36 34905 - 35372 411 155 aa, chain - ## HITS:1 COG:no KEGG:BVU_1945 NR:ns ## KEGG: BVU_1945 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 9 149 10 150 154 155 58.0 4e-37 MIQFRRRLRGVPELNTASLPDLIFTVLFFFMIVTHMREVTLKVKYRVPQGTELTRLTKKS AVVYLYIGMPVTSFGKATGQPMQVQLNDRLVRIDEIADYVSAERDRMSPEDQQQMIISIR ADKHTAMATINQVKQELRNAKALKISYSAEDVKQK >gi|281306619|gb|ADEF01000001.1| GENE 37 35369 - 35899 315 176 aa, chain - ## HITS:1 COG:no KEGG:PRU_1820 NR:ns ## KEGG: PRU_1820 # Name: not_defined # Def: ExbD/TolR family biopolymer transport protein # Organism: P.ruminicola # Pathway: not_defined # 1 173 1 172 174 135 39.0 7e-31 MFIRKRKHQIPGLNTTSTADISFMLLIFFLVTTSMDVDKGLRRQLPPAQPKTTQQESIVD KDKLLELSITADNVVMQNGHKIRLQDLQVKVEDFIMRLGKEHLITIKTAPESTYDAYFQL QHCLMAAYKEVRTKWAQQHFGHSFDDCSDSERQTVIEHYPQRIAETYQDTGGGMSQ >gi|281306619|gb|ADEF01000001.1| GENE 38 35886 - 36410 267 174 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879506|ref|ZP_06288240.1| ## NR: gi|282879506|ref|ZP_06288240.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 174 1 174 174 333 100.0 2e-90 MKYIDLHHRSTERISQLIFYFLIGITFVVFVLFYLLGYQQPYLDNPDFNEPLLTNLLIFA MYGFIFIALCVTMWAARKEIRCGSNQSRLIHGIPVRLIRRCVAGGTCLLLLITFAFASTN PVVSNGKNFTNNLLLRIADQLIYTSSILLIVAVGAVGYGITRYRRKHNSQHVHS >gi|281306619|gb|ADEF01000001.1| GENE 39 36412 - 37167 660 251 aa, chain - ## HITS:1 COG:PA2983 KEGG:ns NR:ns ## COG: PA2983 COG0811 # Protein_GI_number: 15598179 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Pseudomonas aeruginosa # 51 250 3 202 211 79 26.0 4e-15 MAQNAVSQDSVSVQESDSIAHSELNAALADVADTTVAEPQTGGLHQFLKTKFIEGNAGFM SLVALVLVLGLAFCIERIIYLSLSEINAKQFMKDLEKKIYASDIEGAKQQCLQTRGPVAS LCYQGLDRIDDSIENIERSVAAYGSVQATNLEKGCSWITLFIAMAPSLGFLGTVIGMIMT FDQIQMAGDISPTIVAAGMKVALITTIFGIIVALVLQVFYNYILSKIDHITAQMEESAIT LLDTLMKHKQS >gi|281306619|gb|ADEF01000001.1| GENE 40 37464 - 38069 245 201 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803532|ref|YP_001492081.1| 50S ribosomal protein L35 [Rickettsia canadensis str. McKiel] # 1 200 9 224 225 99 33 4e-20 AVMNHDVRTYKVNEIFYSLQGEGHHAGKAAVFVRFAKCNLHCSFCDTNFDEYTEMSAQQI IENVQQYAPCNFVVITGGEPTLQVTATLLQLFHVHGYYVSMETNGTHPIPKGVDWITCSP KKAFIEAGDVQIKQANEIKVVYDGIHPISTFGIEAEERYVQPCDVGDESRNKEILQKAIQ FVKTHPQWKLSLQLHKLIGIQ >gi|281306619|gb|ADEF01000001.1| GENE 41 38075 - 38239 147 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282878838|ref|ZP_06287605.1| ## NR: gi|282878838|ref|ZP_06287605.1| putative queuosine biosynthesis protein QueD [Prevotella buccalis ATCC 35310] # 1 54 88 141 141 105 92.0 8e-22 INDIIPYNPTAENIARWVVNQFEECYKVEVRESEGNVAQAIDETKIVGIENLVM Prediction of potential genes in microbial genomes Time: Sat May 28 06:00:15 2011 Seq name: gi|281306617|gb|ADEF01000002.1| Prevotella timonensis CRIS 5C-B1 contig00033, whole genome shotgun sequence Length of sequence - 1228 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 65 - 1120 843 ## COG3039 Transposase and inactivated derivatives, IS5 family Predicted protein(s) >gi|281306617|gb|ADEF01000002.1| GENE 1 65 - 1120 843 351 aa, chain + ## HITS:1 COG:NMA1199 KEGG:ns NR:ns ## COG: NMA1199 COG3039 # Protein_GI_number: 15794143 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Neisseria meningitidis Z2491 # 27 340 24 324 335 196 37.0 6e-50 MKQTLSSPSFADVVLGHRKVKQTFFSQIDKLIDWTPIRGIIEIAYTKGYKSTGRPSYDSL ILFKIELLRTWYGLSDGEVEEQVNDRLSFSRFVGLGLEDTAPDSTTVCRFRNTLVEAELY DMVLNEINRQLESKGVIVKRGAIIDASITDTPRRPRGRKEYEVVEDRNEADSRDSSEKAM VKEVIKPNVDGDARWIKKMGKLHFGYKRHTVTDENGLILAEETTAANESDIKHLETPLQK ANLPVRTPVYADKGYNSSENKEVLTRMKLKSRIMHKGVRGKKITEREQRINVSISKIRYR VERTFGSMHRWFRAGVARYVGLAKTHAQHIMEAVAYNLYRTPGIIVSNSLK Prediction of potential genes in microbial genomes Time: Sat May 28 06:00:15 2011 Seq name: gi|281306615|gb|ADEF01000003.1| Prevotella timonensis CRIS 5C-B1 contig00080, whole genome shotgun sequence Length of sequence - 854 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 104 - 163 5.0 1 1 Tu 1 . + CDS 255 - 852 311 ## COG5433 Transposase Predicted protein(s) >gi|281306615|gb|ADEF01000003.1| GENE 1 255 - 852 311 199 aa, chain + ## HITS:1 COG:ECs0245 KEGG:ns NR:ns ## COG: ECs0245 COG5433 # Protein_GI_number: 15829499 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Escherichia coli O157:H7 # 35 193 3 156 390 76 32.0 3e-14 MKGKQPLDQTNGIVANTINHAAKVLKNSKLEGSILEKLYEFSSSIPDFRRAEKGNIRHKL GDVIMLLILGRVSNCVSRAEIIEFGKHNLKSFRKLDILANGIPSEATLCRMEEGIDDQAM ANQLQVFAETFHKELLGMCCAQEIVCIDGKAERGTVLKNGRNPDIVSAHSFNTDITLATE VCEEKSNEIKAVPLLIDKI Prediction of potential genes in microbial genomes Time: Sat May 28 06:01:07 2011 Seq name: gi|281306462|gb|ADEF01000004.1| Prevotella timonensis CRIS 5C-B1 contig00022, whole genome shotgun sequence Length of sequence - 188872 bp Number of predicted genes - 155, with homology - 147 Number of transcription units - 82, operones - 43 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 179 - 1111 650 ## COG0053 Predicted Co/Zn/Cd cation transporters - Prom 1171 - 1230 5.5 - Term 1170 - 1215 10.2 2 2 Tu 1 . - CDS 1234 - 2694 1521 ## COG2195 Di- and tripeptidases - Prom 2767 - 2826 5.1 + Prom 2664 - 2723 12.2 3 3 Op 1 . + CDS 2787 - 2981 235 ## PRU_0765 hypothetical protein + Prom 2998 - 3057 3.7 4 3 Op 2 . + CDS 3092 - 3706 810 ## PRU_0764 putative lipoprotein + Term 3711 - 3752 2.1 5 4 Op 1 . - CDS 4707 - 5162 390 ## 6 4 Op 2 . - CDS 5208 - 6032 739 ## COG0284 Orotidine-5'-phosphate decarboxylase - Prom 6079 - 6138 3.0 - Term 6060 - 6116 5.4 7 5 Op 1 . - CDS 6154 - 7266 1290 ## COG0216 Protein chain release factor A 8 5 Op 2 . - CDS 7271 - 8431 965 ## COG0150 Phosphoribosylaminoimidazole (AIR) synthetase 9 5 Op 3 . - CDS 8485 - 9228 719 ## COG0169 Shikimate 5-dehydrogenase 10 5 Op 4 . - CDS 9273 - 10013 492 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 - Prom 10079 - 10138 2.1 11 6 Op 1 . - CDS 10145 - 11089 1171 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 12 6 Op 2 . - CDS 11067 - 12074 937 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase + Prom 12299 - 12358 4.5 13 7 Tu 1 . + CDS 12446 - 13267 623 ## PRU_0725 hypothetical protein - Term 13044 - 13088 0.0 14 8 Tu 1 . - CDS 13326 - 13832 403 ## gi|282879529|ref|ZP_06288260.1| hypothetical protein HMPREF9019_0693 + Prom 13936 - 13995 6.0 15 9 Tu 1 . + CDS 14061 - 15575 1464 ## COG0305 Replicative DNA helicase + Term 15738 - 15781 0.2 + Prom 15680 - 15739 4.9 16 10 Tu 1 . + CDS 15784 - 16404 830 ## PRU_0734 hypothetical protein + Term 16607 - 16645 0.4 + Prom 17090 - 17149 5.7 17 11 Tu 1 . + CDS 17200 - 17904 918 ## COG2859 Uncharacterized protein conserved in bacteria + Term 17972 - 18023 15.1 - Term 17965 - 18006 7.2 18 12 Op 1 . - CDS 18078 - 18452 352 ## COG3304 Predicted membrane protein 19 12 Op 2 . - CDS 18462 - 18884 582 ## COG1970 Large-conductance mechanosensitive channel + Prom 19102 - 19161 8.8 20 13 Op 1 . + CDS 19181 - 20200 1147 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 21 13 Op 2 . + CDS 20227 - 21198 890 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 22 13 Op 3 . + CDS 21188 - 22123 832 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Prom 22167 - 22226 4.5 23 14 Op 1 4/0.000 + CDS 22290 - 24233 1604 ## COG3408 Glycogen debranching enzyme 24 14 Op 2 2/0.071 + CDS 24251 - 25519 1005 ## COG0438 Glycosyltransferase 25 14 Op 3 . + CDS 25574 - 26959 1311 ## COG1449 Alpha-amylase/alpha-mannosidase + Term 27004 - 27053 10.2 - Term 26992 - 27041 10.2 26 15 Op 1 . - CDS 27078 - 27836 580 ## BT_2082 hypothetical protein 27 15 Op 2 . - CDS 27843 - 29012 988 ## BDI_2049 hypothetical protein - Prom 29048 - 29107 5.2 28 16 Tu 1 . - CDS 30144 - 30581 309 ## gi|282879544|ref|ZP_06288275.1| putative lipoprotein - Prom 30655 - 30714 5.7 + Prom 30615 - 30674 2.1 29 17 Tu 1 . + CDS 30700 - 31500 613 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 30 18 Tu 1 . - CDS 31945 - 33072 956 ## COG0611 Thiamine monophosphate kinase - Prom 33111 - 33170 9.2 31 19 Op 1 . - CDS 33252 - 34061 775 ## COG0005 Purine nucleoside phosphorylase 32 19 Op 2 . - CDS 33943 - 35121 752 ## COG1663 Tetraacyldisaccharide-1-P 4'-kinase - Term 35143 - 35182 1.1 33 19 Op 3 . - CDS 35214 - 36983 1872 ## COG0616 Periplasmic serine proteases (ClpP class) - Prom 37004 - 37063 4.7 + Prom 36948 - 37007 7.0 34 20 Tu 1 . + CDS 37033 - 37851 203 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 + Term 37920 - 37966 8.0 - Term 37908 - 37953 11.6 35 21 Op 1 . - CDS 37978 - 40572 2090 ## BF1045 transglutaminase-family protein 36 21 Op 2 . - CDS 40585 - 41346 541 ## COG3142 Uncharacterized protein involved in copper resistance - Term 41351 - 41399 11.1 37 22 Op 1 . - CDS 41405 - 41845 372 ## COG0698 Ribose 5-phosphate isomerase RpiB 38 22 Op 2 . - CDS 41852 - 43870 1821 ## COG0021 Transketolase - Prom 44100 - 44159 6.7 + Prom 43835 - 43894 3.5 39 23 Tu 1 . + CDS 44136 - 45263 876 ## COG0836 Mannose-1-phosphate guanylyltransferase + Term 45313 - 45356 2.6 + Prom 46308 - 46367 3.5 40 24 Op 1 . + CDS 46553 - 49171 2525 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 41 24 Op 2 . + CDS 49202 - 50428 1470 ## PRU_0814 hypothetical protein + Term 50454 - 50497 7.0 - Term 50441 - 50484 3.2 42 25 Tu 1 . - CDS 50711 - 52576 1059 ## COG1032 Fe-S oxidoreductase - Prom 52705 - 52764 5.7 43 26 Op 1 . - CDS 52935 - 53306 432 ## PRU_0788 hypothetical protein 44 26 Op 2 . - CDS 53371 - 55971 1817 ## PRU_0789 putative N-acetylmuramoyl-L-alanine amidase 45 26 Op 3 . - CDS 55968 - 56528 561 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase 46 26 Op 4 . - CDS 56544 - 56816 318 ## PRU_0791 hypothetical protein - Prom 56999 - 57058 6.9 + Prom 56868 - 56927 6.6 47 27 Tu 1 . + CDS 57014 - 58654 1661 ## COG0205 6-phosphofructokinase + Term 58899 - 58953 11.0 48 28 Tu 1 . - CDS 58640 - 58762 74 ## + Prom 58873 - 58932 5.5 49 29 Tu 1 . + CDS 58964 - 59791 616 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 50 30 Tu 1 . - CDS 60006 - 60872 523 ## PROTEIN SUPPORTED gi|150006953|ref|YP_001301696.1| ribosomal protein L11 methyltransferase - Prom 60956 - 61015 6.7 + Prom 60924 - 60983 7.9 51 31 Op 1 . + CDS 61009 - 61980 1006 ## gi|282879567|ref|ZP_06288298.1| conserved hypothetical protein 52 31 Op 2 . + CDS 62005 - 63681 1750 ## PRU_1026 hypothetical protein + Term 63717 - 63761 7.7 + Prom 63713 - 63772 2.4 53 32 Tu 1 . + CDS 63947 - 64153 83 ## + Term 64384 - 64430 4.2 + Prom 64399 - 64458 4.4 54 33 Op 1 1/0.071 + CDS 64488 - 64937 263 ## COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain + Term 64960 - 65001 -0.9 55 33 Op 2 . + CDS 65009 - 65992 662 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Term 65998 - 66048 -0.6 56 34 Op 1 . - CDS 66177 - 66818 661 ## PRU_1361 HD domain-containing protein - Prom 66838 - 66897 3.0 57 34 Op 2 . - CDS 66911 - 67198 164 ## - Prom 67331 - 67390 3.7 + Prom 66810 - 66869 5.9 58 35 Tu 1 . + CDS 67056 - 67967 607 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase 59 36 Op 1 . - CDS 67996 - 70248 2039 ## PRU_1359 hypothetical protein 60 36 Op 2 . - CDS 70323 - 70544 206 ## gi|282879574|ref|ZP_06288305.1| hypothetical protein HMPREF9019_0738 - Prom 70569 - 70628 2.5 61 36 Op 3 . - CDS 70634 - 71473 683 ## PRU_1357 hypothetical protein - Prom 71493 - 71552 3.6 62 37 Tu 1 . - CDS 71623 - 73659 1624 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 73792 - 73851 6.6 + Prom 73751 - 73810 3.1 63 38 Op 1 . + CDS 73911 - 74804 642 ## COG4105 DNA uptake lipoprotein 64 38 Op 2 . + CDS 74885 - 75217 463 ## PRU_1354 hypothetical protein 65 38 Op 3 . + CDS 75220 - 75675 346 ## PRU_1353 hypothetical protein + Term 75733 - 75775 8.1 - Term 75861 - 75900 5.0 66 39 Tu 1 . - CDS 75949 - 77199 1594 ## COG0126 3-phosphoglycerate kinase - Prom 77220 - 77279 9.9 67 40 Op 1 . - CDS 77960 - 78814 675 ## PRU_0459 hypothetical protein 68 40 Op 2 . - CDS 78816 - 79868 754 ## PRU_0458 hypothetical protein 69 40 Op 3 . - CDS 79928 - 80911 863 ## COG0673 Predicted dehydrogenases and related proteins 70 40 Op 4 . - CDS 80915 - 82216 1323 ## COG2252 Permeases 71 40 Op 5 . - CDS 82240 - 83025 607 ## COG2816 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding 72 40 Op 6 . - CDS 83022 - 84806 1444 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 84937 - 84996 2.6 - Term 84972 - 85008 4.2 73 41 Tu 1 . - CDS 85018 - 86769 1746 ## COG1109 Phosphomannomutase - Prom 86801 - 86860 6.3 + Prom 86763 - 86822 6.7 74 42 Op 1 . + CDS 86922 - 87239 253 ## PRU_2631 hypothetical protein 75 42 Op 2 . + CDS 87321 - 87791 416 ## COG1576 Uncharacterized conserved protein 76 43 Op 1 . - CDS 88018 - 89793 1498 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 77 43 Op 2 . - CDS 89796 - 90395 395 ## COG0218 Predicted GTPase - Prom 90426 - 90485 4.1 + Prom 90625 - 90684 5.6 78 44 Tu 1 . + CDS 90813 - 91850 697 ## COG4222 Uncharacterized protein conserved in bacteria - TRNA 91944 - 92017 38.6 # Pseudo GCA 0 0 - Term 91885 - 91936 8.3 79 45 Tu 1 . - CDS 92079 - 92273 168 ## gi|282879593|ref|ZP_06288324.1| hypothetical protein HMPREF9019_0758 - Prom 92299 - 92358 2.5 - Term 92287 - 92350 11.1 80 46 Tu 1 . - CDS 92392 - 93672 1529 ## COG0112 Glycine/serine hydroxymethyltransferase - Prom 93706 - 93765 4.6 81 47 Op 1 19/0.000 - CDS 93791 - 94246 403 ## COG1781 Aspartate carbamoyltransferase, regulatory subunit 82 47 Op 2 . - CDS 94275 - 95222 890 ## COG0540 Aspartate carbamoyltransferase, catalytic chain - Prom 95242 - 95301 8.1 + Prom 95157 - 95216 8.3 83 48 Tu 1 . + CDS 95238 - 97676 1568 ## COG5009 Membrane carboxypeptidase/penicillin-binding protein + Term 97810 - 97847 3.3 - Term 97786 - 97848 21.1 84 49 Op 1 . - CDS 97868 - 98431 626 ## PROTEIN SUPPORTED gi|150005281|ref|YP_001300025.1| 30S ribosomal protein S16 - Prom 98455 - 98514 4.1 85 49 Op 2 . - CDS 98598 - 99641 1077 ## COG1087 UDP-glucose 4-epimerase - Prom 99671 - 99730 3.8 - Term 100050 - 100099 9.3 86 50 Op 1 . - CDS 100107 - 100229 62 ## 87 50 Op 2 . - CDS 100230 - 101645 1129 ## PRU_0993 putative lipoprotein 88 50 Op 3 . - CDS 101722 - 102492 761 ## COG0297 Glycogen synthase - Prom 102705 - 102764 5.2 + Prom 102362 - 102421 2.2 89 51 Tu 1 . + CDS 102527 - 102667 69 ## - Term 102718 - 102770 14.2 90 52 Op 1 . - CDS 102798 - 103223 560 ## COG0511 Biotin carboxyl carrier protein 91 52 Op 2 . - CDS 103276 - 103425 170 ## gi|282879603|ref|ZP_06288334.1| conserved hypothetical protein 92 52 Op 3 . - CDS 103450 - 105015 1488 ## COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) - Prom 105053 - 105112 6.0 + Prom 105319 - 105378 3.4 93 53 Op 1 41/0.000 + CDS 105404 - 105673 439 ## COG0234 Co-chaperonin GroES (HSP10) 94 53 Op 2 . + CDS 105742 - 107367 1672 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 107397 - 107433 -0.4 + Prom 107702 - 107761 1.7 95 54 Tu 1 . + CDS 107785 - 109326 1348 ## COG1660 Predicted P-loop-containing kinase + Prom 109328 - 109387 5.1 96 55 Op 1 . + CDS 109410 - 110177 512 ## COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 97 55 Op 2 . + CDS 110226 - 111770 1248 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 111796 - 111834 0.6 + Prom 112526 - 112585 5.2 98 56 Tu 1 . + CDS 112606 - 113409 543 ## COG3177 Uncharacterized conserved protein + Prom 113580 - 113639 9.0 99 57 Tu 1 . + CDS 113667 - 114623 685 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 100 58 Tu 1 . - CDS 114670 - 119019 2207 ## PRU_1251 hypothetical protein - Prom 119231 - 119290 9.2 + Prom 119195 - 119254 11.8 101 59 Op 1 7/0.000 + CDS 119293 - 120663 1112 ## COG1726 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA 102 59 Op 2 9/0.000 + CDS 120668 - 121831 834 ## COG1805 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB 103 59 Op 3 9/0.000 + CDS 121836 - 122558 722 ## COG2869 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC 104 59 Op 4 9/0.000 + CDS 122573 - 123199 576 ## COG1347 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD 105 59 Op 5 7/0.000 + CDS 123230 - 123838 570 ## COG2209 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE 106 59 Op 6 . + CDS 123845 - 125116 1201 ## COG2871 Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF + Term 125148 - 125194 9.3 - Term 125496 - 125537 3.2 107 60 Op 1 . - CDS 125553 - 127004 1364 ## GAU_3173 hypothetical protein 108 60 Op 2 . - CDS 127008 - 129812 2192 ## COG4206 Outer membrane cobalamin receptor protein - Prom 129936 - 129995 8.2 - Term 130044 - 130078 2.6 109 61 Op 1 . - CDS 130235 - 130603 311 ## COG3169 Uncharacterized protein conserved in bacteria 110 61 Op 2 . - CDS 130600 - 132951 2340 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases - Prom 132975 - 133034 4.6 111 62 Op 1 . - CDS 133044 - 133667 608 ## PRU_1474 hypothetical protein 112 62 Op 2 . - CDS 133682 - 134971 1279 ## COG0172 Seryl-tRNA synthetase - Prom 135042 - 135101 4.0 - Term 135141 - 135178 6.4 113 63 Op 1 32/0.000 - CDS 135214 - 135504 330 ## PROTEIN SUPPORTED gi|110636876|ref|YP_677083.1| 50S ribosomal protein L27 114 63 Op 2 . - CDS 135525 - 135842 424 ## PROTEIN SUPPORTED gi|150006123|ref|YP_001300867.1| 50S ribosomal protein L21 - Prom 135932 - 135991 5.7 + Prom 135807 - 135866 3.8 115 64 Tu 1 . + CDS 135953 - 136111 125 ## gi|282879627|ref|ZP_06288358.1| hypothetical protein HMPREF9019_0793 116 65 Op 1 . - CDS 136089 - 136928 646 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 117 65 Op 2 . - CDS 136976 - 139294 2015 ## COG0281 Malic enzyme - Prom 139368 - 139427 7.0 + Prom 139427 - 139486 5.7 118 66 Tu 1 . + CDS 139546 - 140166 453 ## PRU_1212 TetR family transcriptional regulator + Term 140295 - 140345 -0.8 - Term 140003 - 140037 1.2 119 67 Op 1 . - CDS 140222 - 140383 161 ## gi|282879631|ref|ZP_06288362.1| conserved domain protein 120 67 Op 2 . - CDS 140457 - 142712 1987 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Prom 142783 - 142842 3.5 + Prom 142720 - 142779 3.3 121 68 Tu 1 . + CDS 142808 - 144325 1254 ## PRU_1211 hypothetical protein + Term 144484 - 144529 2.1 + Prom 145142 - 145201 6.7 122 69 Op 1 23/0.000 + CDS 145283 - 146278 1032 ## COG0714 MoxR-like ATPases 123 69 Op 2 . + CDS 146360 - 147250 704 ## COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) + Prom 147269 - 147328 5.5 124 70 Op 1 . + CDS 147351 - 148388 929 ## PRU_0758 hypothetical protein 125 70 Op 2 5/0.000 + CDS 148424 - 149422 488 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain + Prom 149433 - 149492 1.9 126 70 Op 3 . + CDS 149521 - 150546 827 ## COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain 127 70 Op 4 . + CDS 150554 - 151243 547 ## PRU_0760 putative BatB/BatC protein 128 70 Op 5 . + CDS 151275 - 153872 2375 ## PRU_0761 putative BatD/BatE protein 129 70 Op 6 . + CDS 153897 - 154595 285 ## PRU_0762 PAP2 domain-containing protein 130 70 Op 7 . + CDS 154616 - 155914 934 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 131 70 Op 8 . + CDS 155965 - 157137 935 ## BVU_0331 putative DNA mismatch repair protein 132 70 Op 9 . + CDS 157179 - 159239 1685 ## COG0171 NAD synthase + Term 159284 - 159341 11.3 - Term 159272 - 159329 11.3 133 71 Op 1 . - CDS 159330 - 160448 775 ## PRU_1517 hypothetical protein 134 71 Op 2 11/0.000 - CDS 160445 - 161335 497 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 135 71 Op 3 . - CDS 161374 - 162294 644 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Prom 162544 - 162603 7.3 136 72 Tu 1 . + CDS 162629 - 164134 898 ## COG0174 Glutamine synthetase - TRNA 164340 - 164413 55.5 # Gly CCC 0 0 - TRNA 164419 - 164491 86.3 # Thr CGT 0 0 137 73 Op 1 . - CDS 164638 - 165930 669 ## PRU_0475 hypothetical protein 138 73 Op 2 . - CDS 165955 - 168333 1660 ## PRU_1228 hypothetical protein - Prom 168356 - 168415 2.8 139 74 Op 1 . - CDS 168807 - 169952 785 ## gi|282879652|ref|ZP_06288383.1| hypothetical protein HMPREF9019_0819 140 74 Op 2 . - CDS 169993 - 170706 475 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) - Prom 170798 - 170857 6.7 141 75 Op 1 . - CDS 171217 - 172026 465 ## PRU_0877 hypothetical protein 142 75 Op 2 . - CDS 172060 - 173124 750 ## COG1879 ABC-type sugar transport system, periplasmic component - Prom 173182 - 173241 4.0 + Prom 173186 - 173245 4.6 143 76 Op 1 . + CDS 173282 - 176842 1953 ## COG0642 Signal transduction histidine kinase 144 76 Op 2 . + CDS 176818 - 177543 716 ## PRU_0870 response regulator 145 76 Op 3 . + CDS 177533 - 178135 284 ## PRU_0869 hypothetical protein + TRNA 178331 - 178403 77.4 # Phe GAA 0 0 - Term 178319 - 178385 31.6 146 77 Op 1 . - CDS 178483 - 180258 1189 ## COG0038 Chloride channel protein EriC - Prom 180301 - 180360 2.4 147 77 Op 2 . - CDS 180403 - 180933 502 ## COG0009 Putative translation factor (SUA5) - Term 181139 - 181187 0.8 148 78 Tu 1 . - CDS 181351 - 182316 795 ## COG0223 Methionyl-tRNA formyltransferase - Prom 182390 - 182449 9.0 + Prom 182280 - 182339 5.6 149 79 Tu 1 . + CDS 182363 - 182620 105 ## + Term 182694 - 182729 -0.6 150 80 Tu 1 . - CDS 182589 - 183542 630 ## COG1705 Muramidase (flagellum-specific) - Prom 183569 - 183628 5.1 + Prom 183491 - 183550 8.5 151 81 Op 1 . + CDS 183597 - 183974 378 ## BF2228 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 152 81 Op 2 . + CDS 183984 - 185240 695 ## PRU_1040 hypothetical protein 153 81 Op 3 . + CDS 185257 - 185922 388 ## gi|282879665|ref|ZP_06288396.1| tetratricopeptide repeat protein 154 81 Op 4 . + CDS 185982 - 188519 1855 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 188661 - 188700 7.1 155 82 Tu 1 . - CDS 188475 - 188672 166 ## - Prom 188735 - 188794 6.1 Predicted protein(s) >gi|281306462|gb|ADEF01000004.1| GENE 1 179 - 1111 650 310 aa, chain - ## HITS:1 COG:L67760 KEGG:ns NR:ns ## COG: L67760 COG0053 # Protein_GI_number: 15673428 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Lactococcus lactis # 2 307 3 308 314 345 61.0 7e-95 MKKERGGMASVIAALAANLLVAISKLIGYLLSGSAAMLNESIHSLVDCSNQILLLIGDKK ARKLADNDHPFGQARAKYFYSLVVAMLLFFGGGALGIMEAAEKLFHPAHSLENTWLVIII LAVGMVIEGSSLWVAFREIKQLNTEQLSLFQFLRRSRHSEIIIIFAEDSCAVIGLLLAMI GTVLTHFTGNSFYDAFSGVLIGVLLCLAAIFLAREFYSLLIGESATTTDMNTIRKAFVRP EITRLIDVKTVHLSATDILLTAKVDIADPFELQAATVINDIERDIRNSLPHYKIFIYIEV DEFKKNYQRA >gi|281306462|gb|ADEF01000004.1| GENE 2 1234 - 2694 1521 486 aa, chain - ## HITS:1 COG:VC2279 KEGG:ns NR:ns ## COG: VC2279 COG2195 # Protein_GI_number: 15642277 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Vibrio cholerae # 2 485 51 533 534 407 42.0 1e-113 MEKKDLKPAGVFEHFARINEIPRPSKREEKMIEYLKEFGKKHQLETKVDETGNVIIRKPA TKGYENLATVILQSHMDMVCDKLVDVEFDFDKDAIQTYIDGEWLTAKGTTLGADDGIGMA IELAILSADDIEHGPIECVFTRDEETQLTGAMGMKAGFMTGDYLINLDSEDEGQIFVSCA GGRSTNATFDYQAEEAPKDYFFLQIALKGLVGGHSGDDINKKRANAIKILNRFLYNEKEK FDLRLCSFNSGKLHNAIPRDGKVIFAIPNDVKEQVRADWNVFQTEVMQEYHVTDKDMVFS MESAEACRVMPKNVGCQIINALQAVDNGVFAMCQDEILAKMVETSSNVAAVKTLEDKVEI LSSQRSNVMSNLDNMCNTVKAAYELAGAKVEQTDGYPAWNMNPDSKLVKITVDAYKKLFN KEPKVLGIHAGLECGLFSERYPHIDMVSFGPTLRFVHTPDERLHIPTVQMVWDHLLEILK NIPEKK >gi|281306462|gb|ADEF01000004.1| GENE 3 2787 - 2981 235 64 aa, chain + ## HITS:1 COG:no KEGG:PRU_0765 NR:ns ## KEGG: PRU_0765 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 58 1 58 68 81 67.0 9e-15 MLKTLLLSLLIIAICFALLAVKLLFRKNGSFTSQHIHDSKAMQERGIHCVVDQDREARRS NKAC >gi|281306462|gb|ADEF01000004.1| GENE 4 3092 - 3706 810 204 aa, chain + ## HITS:1 COG:no KEGG:PRU_0764 NR:ns ## KEGG: PRU_0764 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 194 1 188 211 147 53.0 3e-34 MKKTMIRSVAVAALAAFTLVACDKSKSQVDNKNEEATPKVPTEFKVAYVEVDSIMTQYKF CKDYSMILQKKGQNIQNTLAGKQKQLEQAAGNFQQKLQQNAYTREQAESIQAGLQKQGAD LQALNQRLTNEFQTETDKYNKALRDSIQHFLASYNKDKKYSLILSKAGDNLLYADKAYDI TKDVVAGLNKAYKPVDAKKKDEKK >gi|281306462|gb|ADEF01000004.1| GENE 5 4707 - 5162 390 151 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEEVPIIPTTLRFADIFPILIIVIMGLGVIAFWLYRKGYFLKKYVVAATDNDENSKNEQE NQLPIDVMMFEEDNLTIYPNYLYINKTKVGFNQIEDITFHNSSSPYEAQSYHLVITTTLT QHPVFRLPVGSSVLFARDASERLISYWQQYK >gi|281306462|gb|ADEF01000004.1| GENE 6 5208 - 6032 739 274 aa, chain - ## HITS:1 COG:RSc2773 KEGG:ns NR:ns ## COG: RSc2773 COG0284 # Protein_GI_number: 17547492 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Ralstonia solanacearum # 4 268 22 285 288 208 42.0 8e-54 MTKQQLVKQIFDKQTFLCVGLDPDLQKIPAHLLEDEDPIFAFNRAIIDATAPYCVAYKPN LAFYESTGIKGMLSFEKTVKYLQDNYPTHFLIADAKRGDIGNTSAMYAKTFFETYQVDAL TIAPYMGEDSVKPFLAYQDKWAIVLALTSNKGSHDFQLTQDTTGMRLFEKVIATSSQWGT DENMMYVVGATQGKMFEDIRKVAPHHFLLVPGIGAQGGSLQEVCRYGMTKDCGLLVNSSR GILYASNDIHFAEAAKEAAKELQAQMKEELQAHC >gi|281306462|gb|ADEF01000004.1| GENE 7 6154 - 7266 1290 370 aa, chain - ## HITS:1 COG:L0373 KEGG:ns NR:ns ## COG: L0373 COG0216 # Protein_GI_number: 15672577 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Lactococcus lactis # 7 367 1 354 357 319 47.0 7e-87 MIENNSILNKLEGLEARFEEVSTLITDPDVIADQPRYVKLTKEYKDLGDIMDIRKRYIAC LNAIRESKDILANETDADMKEMAREELQANEDMQPQLEEEIKLALVPKDPEDAKNVQMEI RAGTGGDEAALFAGDLFNMYKHYCDSKGWTLSVTSVNEGSVGGYKEIDFAVSGDNVYGTL KYESGVHRVQRVPATETQGRMHTSAATVAVLPEADQFEVNINEGDIKWDTFRSSGAGGQN VNKVESGVRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYID DIANRRKSLVSTGDRSAKIRTYNYPQGRVTDHRIGYTTHDLQGFIGGDIQGVIDALTVAE NAEKLKDSEL >gi|281306462|gb|ADEF01000004.1| GENE 8 7271 - 8431 965 386 aa, chain - ## HITS:1 COG:MJ0203 KEGG:ns NR:ns ## COG: MJ0203 COG0150 # Protein_GI_number: 15668375 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole (AIR) synthetase # Organism: Methanococcus jannaschii # 45 368 49 323 350 112 29.0 1e-24 MDRYMMRGVSAAKEDVHDAIKNIDKGIYPQAFCKIIPDILGGDPDYCNIMHADGAGTKSS LAYMYWKETGDLSVWKGIAQDAIVMNTDDLLCVGAVDNILVSSTIGRNKLLIPGEVISAI INGTDELLQEMRDMGIGIYPTGGETADVGDLVRTIIVDSTVTCRMKRSEVIDNANIRPGD VIVGLSSTGQATYEKTYNGGMGSNGLTSARHDVFAKYLAEKFPESYDNAVPDDLVYSGEY QLTDSIEGVEIDAGHLVLSPTRTYAPIIKKVLDAHRSHIHGMVHCTGGAQTKVLHFVGDN CKVVKDNLFPVPPLFKTIQRCSGTDWKEMYKVFNMGHRMEIYVAPEYAQEIISISKSFNV DAQIIGHIEEGKRSLTIQSELGTFEY >gi|281306462|gb|ADEF01000004.1| GENE 9 8485 - 9228 719 247 aa, chain - ## HITS:1 COG:CAC0897_2 KEGG:ns NR:ns ## COG: CAC0897_2 COG0169 # Protein_GI_number: 15894184 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Clostridium acetobutylicum # 4 246 7 252 273 140 38.0 2e-33 MDKYGLIGYPLGHSFSIDYFNEKFENEGIDAQYVNFEIPKIENLEEVLASNPELKGLNVT IPYKEKVISYLDEISPEAKEIGAVNVIRVTHKGKKTLLKGYNSDVIGFTRSIEPMLETFH QKALILGTGGAAKAIDVGLRSLGITTKFVSRTPRQGVLTYQDITPAVMNDYRIVVNCTPV GMYPHADTCPPLPYEAMDMHHLLYDLIYNPDETLFLKKGAEHGATIKNGLEMLLLQAFVS WEFWHEY >gi|281306462|gb|ADEF01000004.1| GENE 10 9273 - 10013 492 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 23 244 1 221 221 194 45 3e-48 MYEQEHIKPYHAEGEKKQQVAQMFDHIAPTYDALNHRLSWNIDKGWRKKAIQQLCPFAPQ TVLDIATGTGDFAIMAAQMLQPRKLIGADISTGMMKIGEQKVAKIGLSHVISFQKEDCLA LSFQENSFDAVTAAFGIRNFQDLDQGLREIHRVLKPGGHVSIVELTQPVAFPMRQLFKLY SHTFLPFYGKLLSKDKRAYEYLTTTIEAFPQGETMLQIFAKAGFAKAQFTRLTFGICTMY LAQKEK >gi|281306462|gb|ADEF01000004.1| GENE 11 10145 - 11089 1171 314 aa, chain - ## HITS:1 COG:mll2603 KEGG:ns NR:ns ## COG: mll2603 COG0152 # Protein_GI_number: 13472340 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Mesorhizobium loti # 18 312 40 337 337 255 44.0 8e-68 MKALTKTDFHFDGQKSVYHGKVRDVYDINDDKIVMVATDRISAFDVVLPKGIPFKGQVLN QIAAKFLDLTQDICPNWKLATPDPMVTVGIKCEGFRVEMIIRSILTGSAWREYKAGAREL CGVKLPEGMKENERFPEPIVTPTTKADEGHDMNISKEEIIKQGLVSAEDYAVIEDYTRKL FARGQEIAAKQGLILVDTKYEFGKRDGKIYLIDEIHTPDSSRYFYADGYEEKLAKGEPQK QLSKEFVRQWLIEHNFMNEPGQTMPEITDEYAESVSERYIELYEHITGEKFVKADEHDDL AARIERNVKEYLKA >gi|281306462|gb|ADEF01000004.1| GENE 12 11067 - 12074 937 335 aa, chain - ## HITS:1 COG:DR1988 KEGG:ns NR:ns ## COG: DR1988 COG1702 # Protein_GI_number: 15806986 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Deinococcus radiodurans # 15 315 62 362 380 271 47.0 2e-72 MIEKHIVLEDIDPVAFYGVNNGHLQMMKSLFPKLRIVARDNVIRILGDEEEMAKVEEDIE LMRKHIVKYNAITEEDILDIVHDHKTKADAVKGVVVYSIAGRPIKSRSEKQQQLIDAYHQ SDMIFAIGPAGTGKTYLSIALAVRALKEKQAKKIILSRPAVEAGEKLGFLPGDMKDKIDP YLQPLYDSLQDMIPAVKLQDMLEKNIIQIAPLAFMRGRTLNDAVVILDEAQNTTPAQIRM FLTRMGWNTKMIVTGDLTQIDLPKHQKSGLKEAVEILHNVEGISVVELGQKDIVRHKLVT RIVHAYETYDQRREENEENQPIKDKIYNNESINKD >gi|281306462|gb|ADEF01000004.1| GENE 13 12446 - 13267 623 273 aa, chain + ## HITS:1 COG:no KEGG:PRU_0725 NR:ns ## KEGG: PRU_0725 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 15 273 3 239 239 281 55.0 3e-74 MKISKQKYLQGFAFVVVLLGMVRCIFPQVATDRSQGMAQLSNARQLDSAQASQQTNRPNP SRPANMPTQRATVSRFFRADGSEVKNRIYSVSNFSKAFPDQNDVQLASATHWGVEPVTNR EEAESRKAELVYVGANPFFYVDRLKSSIPYLVPQAAVLLQDIGSNFFDSLQIKGIPLHKI IVTSVMRSKADVEKLQGRNTNAKSNSCHLYGTTFDVAYNRYVTVQEPNGPSRRKVRNDSL KWVLSEVLNDLRQQNRCHVKYEVHQGCFHITVK >gi|281306462|gb|ADEF01000004.1| GENE 14 13326 - 13832 403 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879529|ref|ZP_06288260.1| ## NR: gi|282879529|ref|ZP_06288260.1| hypothetical protein HMPREF9019_0693 [Prevotella timonensis CRIS 5C-B1] # 1 168 5 172 172 345 99.0 6e-94 MAAQTPIANRVRVAARHLPQGATVLAKYTDNQRHCLYYIQGEKIFCLDVVLNINEELDFN QHTYKKVVSTSISNGGDYMFVVLDRGENTGEALEQRFELWRIDSKNRHFTQLGRGFKIEK TKEGYVLSQTVKCLTPRAPRSQQRWMVREQGYDEKGKPLPPQKPYEMK >gi|281306462|gb|ADEF01000004.1| GENE 15 14061 - 15575 1464 504 aa, chain + ## HITS:1 COG:lin0047 KEGG:ns NR:ns ## COG: lin0047 COG0305 # Protein_GI_number: 16799126 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Listeria innocua # 21 463 11 445 450 367 43.0 1e-101 MAIPKTKKTTPIDTTYAHVQPQATDVERVVLGALMIDKDAFSVVSELIRPETFYDPKHQK IYHAIQTLNMDENPVDIMTVIDQLKREGTLDEIGGAPYVLELSSQVASSANIEYHAKIIA QKSLARQLISYASMIETKAFDETQDIAELMQEAEGNLFTLSQTNMKKDYTQIDPIIAQAT DILQKASANTGDLTGIPSGFTKLDEITSGWQKSDLVIIAGRPAMGKTSFALSIAKNIAVD YNEPIAFFSLEMNNVQLVNRLISNTCEISGSKILSGQLSDEEWKRFDVKVRNLTGTPIYI DDTPGLSIFELRTKARRLVREKGVKLIMIDYLQLMNANGIRFGNRQEEVSTISRSLKGLA KELDIPVLALSQLSRNVENREGLEGKRPQLSDLRESGAIEQDADMVLFVHRPEYYRLYED ANGVDLRGKAQIIIAKHRKGATGDVLLNFRGEFTRFENVDDRYSMPVREGGEFVESRMND GFPPPPPDDTTPFNGMTSGENPPF >gi|281306462|gb|ADEF01000004.1| GENE 16 15784 - 16404 830 206 aa, chain + ## HITS:1 COG:no KEGG:PRU_0734 NR:ns ## KEGG: PRU_0734 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 3 203 13 213 217 155 43.0 8e-37 MHAQDHQTLRSQLKEATEELSYYPDSVDLRLKKAALNLQLEQWQYAKDEYDQVLRSHPDN IAGLYYRAYANQQLGRYNFARLDYENLLKVVPGHFSAQLGLALLNQKDKHHTEAMNQINR LVNQFPDSAVAYAARAGMEQEQGMIELAVYDYTEALKRDADNADYLLNRVELWLKLGRKQ RAKADLDKLVELGVPRPALKKWYRQL >gi|281306462|gb|ADEF01000004.1| GENE 17 17200 - 17904 918 234 aa, chain + ## HITS:1 COG:VCA0167 KEGG:ns NR:ns ## COG: VCA0167 COG2859 # Protein_GI_number: 15600937 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Vibrio cholerae # 8 234 32 262 262 179 44.0 3e-45 MQKERIISATILAVSIVILGFALKGGIDNFVNKDHKVTVKGLSEREVEADKVTWPILSKE LGNDLPELYEKIGHTQAIIKKFLLDNGITESEISVNAPSVIDMNANQYSSNESRYRYNIT SSITVTSKKVKLVRQIIAKQGNLLKLGVAIVEGGYENPVKYEYVAFSSMKPKMMQEAIEN AEKTAQQFAENSHSKLSKIVSADQGQFSIEDRDSNTPYIKKVRVVTTITYSLKD >gi|281306462|gb|ADEF01000004.1| GENE 18 18078 - 18452 352 124 aa, chain - ## HITS:1 COG:VCA1051 KEGG:ns NR:ns ## COG: VCA1051 COG3304 # Protein_GI_number: 15601802 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 1 121 2 129 143 92 38.0 2e-19 MKTIGNVLWLVFGGLEAALQYFLGGCLLMLTIVGIPFGLQACKIGFFILWPFGSKVVSTS EGNGCLNAAMNLIWIVFAGIWISITHVFFGVCLYLTIIGIPFGHQHFKMASLALNPFGKD VQVQ >gi|281306462|gb|ADEF01000004.1| GENE 19 18462 - 18884 582 140 aa, chain - ## HITS:1 COG:FN0766 KEGG:ns NR:ns ## COG: FN0766 COG1970 # Protein_GI_number: 19704101 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Fusobacterium nucleatum # 1 137 6 136 142 149 62.0 2e-36 MSKFFNEFKEFAMRGNVIDMAVGVIVGGAFGKIVTSLVNDIIMPPLGFALGRVDFTDLSI KLGEKLAEDGKTMEAVTLNYGNFIQEVVNFLIIAFCIFLAIKGINSLSKKKEEVKEEPAA PAPTKEETLLTEIRDLLKNK >gi|281306462|gb|ADEF01000004.1| GENE 20 19181 - 20200 1147 339 aa, chain + ## HITS:1 COG:VC2000 KEGG:ns NR:ns ## COG: VC2000 COG0057 # Protein_GI_number: 15642002 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Vibrio cholerae # 2 336 3 331 331 474 74.0 1e-133 MIKIGINGFGRIGRFVFRASLEEANAKDVVVVGINDLCPVDYLAYMLKYDTMHGQFDGTI EADVEKSQLIVNGNVIRVTAERNPADLKWNEIGAEYVVESTGLFLTKEKSQAHIDAGAKY VVMSAPSKDDTPMFVCGVNHDKYVKGTQFVSNASCTTNCLAPIAKVLNDKFGITDGLMTT VHSTTATQKTVDGPSMKDWRGGRAASGNIIPSSTGAAKAVGKVIPELNGKLTGMSMRVPT LDVSVVDLTVNLAKPAKYEEICKAMKEASEGELKGILGYTEEAVVSSDFLGDARTSIFDA KAGIALTDTFVKVVSWYDNEIGYSHKVVELIKHMAKVNG >gi|281306462|gb|ADEF01000004.1| GENE 21 20227 - 21198 890 323 aa, chain + ## HITS:1 COG:TP0637 KEGG:ns NR:ns ## COG: TP0637 COG0324 # Protein_GI_number: 15639624 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Treponema pallidum # 20 304 23 306 316 236 44.0 6e-62 MPFDFCRTAFFYYICGVKLLTILGPTASGKTAFAAQLAVKMGGEIISADSRQVYRGMDIG TGKDLADYEVHGYSVPYHLIDIVNAGEKYNLFQYQQDFHVAYQDIVDRGRQPILCGGTGL YIEAVLKGYALSPVPQNPELRNSLEGCSLEELTERLIRLKAQNNSTMHNRSDVDTAQRAI RAIEIETYNKEHRLENRNLPPIETCIIGLDIDRESRRAKITNRLKQRLKEGMVEEIQELL ATGIPANDLIYYGLEYKYVTEYIIGELSYDEMFQRLEIAIHQFAKRQMTWFRGMERRGFK IYWIDALLPTPEKIKQVQQIYGN >gi|281306462|gb|ADEF01000004.1| GENE 22 21188 - 22123 832 311 aa, chain + ## HITS:1 COG:TM0358 KEGG:ns NR:ns ## COG: TM0358 COG1597 # Protein_GI_number: 15643126 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Thermotoga maritima # 14 309 10 302 304 99 26.0 6e-21 MAIDNNRWGILYCPKTNAFRPQKRWEKIEKYLKEQQVAYDYVQSESASSVQRLIKMFINS GYKTIIVVGGDSALNDTVNCLMQVDAETRNQIVLGLIPNGLMNDFAHFWGIEEDDEERLV KAFKRRRVKKIDMGCIRYTNTEGDACRRYFLNCINIGYVAAIMNLRRKMNHIFGSRALSF LFSFGLLLFQRLDYKMHLKINTDVIKRKVMTVCVGNALGYGQTPNAVPYNGLLDVSIVYH PEMTQLFEGIYLFLRGKFLNHRSVHPYRTKKVEVFAAKRAMVGIDGRLMKTPVNKFTISI APDVINFLLPD >gi|281306462|gb|ADEF01000004.1| GENE 23 22290 - 24233 1604 647 aa, chain + ## HITS:1 COG:MA0905 KEGG:ns NR:ns ## COG: MA0905 COG3408 # Protein_GI_number: 20089784 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen debranching enzyme # Organism: Methanosarcina acetivorans str.C2A # 1 638 22 670 680 288 32.0 2e-77 MSYIKFEKALMTNLEYSLQREILRTNRSGAYACSTIVDCNTRKYHGLLTVPIPDIDEDNH VLLSSLDVTVIQHGAEFNLGLHKYQGNHFSPKGHKYIRQFNCDKVPTTIYRVGGVLLKKE VVFQHYEDRILICYTLLDAHSSTILRFKPFLAFRSVRQFTHENATASRAYDEVPNGIKTC MYAGYPDLYMQFSKKNEFVFQPDWYRGVEYPKEQERGYASNEDLYVPGYFEMGITKGESV VFAASTSSSDTTKMLSVFTQEVESRSPRNNFFHCLVNAAHQFHIRASEDERYLIAGYPWF KCRARDTFIAVPGLTLSIEETDYFEKVMKTALQGLQEFMQGEPLSVKIYEIDQPDVLLWA IWAIQQYGKSEGLEKCLSLYGETVHQIIEFIINGRHPNLSLQSNGLLKTNGKDRPVTWMN STVNGRPVIPRTGNIVEFNALWYNALKYVSALCLAAHDQEAANHYESMAEKCGEAFVQTF YNDCGYLFDYVDEGYQDKSVRPNMVFAVAFDYSPLTQQQKKSVLDICTRELLTPKGLRSL SPKSVGYNPMYFGPQTQRDYAYHQGTAWPWLGGFYMEASLKLYKRTRLSFIERQMVGYED EMIRHCLGTIPELFDGNPPFSGRGAISYAINVAEILRALELLEKYKY >gi|281306462|gb|ADEF01000004.1| GENE 24 24251 - 25519 1005 422 aa, chain + ## HITS:1 COG:Ta0340 KEGG:ns NR:ns ## COG: Ta0340 COG0438 # Protein_GI_number: 16081471 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Thermoplasma acidophilum # 1 416 20 386 388 212 30.0 1e-54 MKVLMFGWEYPPHILGGLGTASFGITEGLHAQGDMDITFCLPKPWGDEDQSNAHILAMNN VPVVWHDVDYDYVKGRIGAITSPEEYYQLRDHIYADFSYMQVNDLGCIEFSGRYPDNLHE EINNYSIVAGVVARSRDFDIIHAHDWLTYPAGIHAKQVSGKPLCIHVHATDFDRSRGKVN PTVYGIEKNGMDYADCIMCVSELTRQTVIHQYHQDPRKCFTVHNAVYPLRQELEDIPRPN HEGKEKVVTFLGRLTMQKGPEYFVEAANMVLHRTHNIRFCMAGSGDMMDQMIYLAAKRGI ADRFHFPGFMRGKQVYECLKASDVYVMPSVSEPFGISPLEAMQCGTPSIISKQSGCAEIL HNCIKVDYWDINALADAMYSICHNESLFKYLQEEGKREVDQITWEKVGLWIRELYERTMG WR >gi|281306462|gb|ADEF01000004.1| GENE 25 25574 - 26959 1311 461 aa, chain + ## HITS:1 COG:MA4052 KEGG:ns NR:ns ## COG: MA4052 COG1449 # Protein_GI_number: 20092845 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-amylase/alpha-mannosidase # Organism: Methanosarcina acetivorans str.C2A # 1 387 1 390 396 251 35.0 3e-66 MKTICLYFEIHQNIQLKRYRFFDIGTDHYYYDDYENERMMTEIAEKSYMPALNTLLEMIH SSDKYFKVAFSVSGVAMEQMEIHAPQVLEKLQELNETGCVEFLAEPYSHGLASLANEESF AQEVKRQCQKMHEYFGQHPKVLRNSSLIYSDDIGLQVANMGFEGMLTEGAKHVLGWKSPH YLYHCALAPQLKLLLRDVGMSDDISLRFNNRDWPGYPLFADHYIDRIANLPEREQVVNIF MNLSAIGIAQPLNSNILEFFKALPACAKEKQITFSTPSEICANIKTVDALDVPDTLSWYD EERDVSTWLGNPMQREAFNKLYSVADRVRIANDPRINQDWDYLQASNNFRFMTTKSTAVG FDRGIYSSAFDAFTNYMNILGDFINRVNTLYPEDIDNEELNSLLTTIKNQGEEIVIKEKE ILRLQNKIEKIEKESGKLRAKLEDKEKPTNDKPAATKVEEK >gi|281306462|gb|ADEF01000004.1| GENE 26 27078 - 27836 580 252 aa, chain - ## HITS:1 COG:no KEGG:BT_2082 NR:ns ## KEGG: BT_2082 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 21 249 30 259 261 164 38.0 3e-39 MKKKQIILATVLSVFTSMSCLAESWWHQLEVTARIGYNLGGTAPFGLPASIRSLESYKMP NNSVFELDGTQAINESWSWSSGLRFENKDMLVDARVKNYHMAMVQGQSAMEGMFSGYVHT EVRQWMVTLPVQVSYHVHPRIKLRAGVYGSYLLTKSFTGNAYNGYLRVGSPTGAKIELGN DLGTRGDYDFSSDMRNFQFGIVTGVDLHVYRRIGLYADVNWGLTGIHKSAFKTIEQTLYP VYGTIGLSYKIK >gi|281306462|gb|ADEF01000004.1| GENE 27 27843 - 29012 988 389 aa, chain - ## HITS:1 COG:no KEGG:BDI_2049 NR:ns ## KEGG: BDI_2049 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 17 388 17 363 364 232 37.0 2e-59 MKFYRNLCLVAVCSLLVSCFKEEPLNAECDILAVRVADNQLQEMFFNEAERQIEVLSGDS IINFKVRRKADLKAIAPLFKITEGATIQPANGSTHDFSKGSVTYTVTSEDKQWSRRYKVS FIPTSQTVKDTIHFDFEHFRIEPHDKKFYLWYDFDENGKETDYWATGNIAFSIAAGDKPA DEYPSVPVSEGGHHGAYVRLTTCSTGPLGAMFGKPTAAGNIFFGKFDAGQSLVDPNKATQ FGIPFDKKPIKFTGWYKYQPGKNFQNQQQKILKDRTDQAAMYAVLYRNTVAEGDGEGKSK KIVLDGNNILTSEHIVAIAQVENIKTTSEWTPFDISFQYHQPIDENIVENRGYSLAIVFS SSRDGAKFEGAIGSELCIDDIRIICTSEE >gi|281306462|gb|ADEF01000004.1| GENE 28 30144 - 30581 309 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879544|ref|ZP_06288275.1| ## NR: gi|282879544|ref|ZP_06288275.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 145 10 154 154 295 100.0 7e-79 MCVWVSGLLIAACSSHKDEPQLKETANGFAETFFNWQLKEALPYCSPESKKWIEYAGSQI TQEDIDLLKAQDEGASHQLEDINYQAGDTTATVIVKVKNVMLLDSIGTSGKMMEKASFQI HLCYRNKQWKVLLTSLPRPMRNSNI >gi|281306462|gb|ADEF01000004.1| GENE 29 30700 - 31500 613 266 aa, chain + ## HITS:1 COG:BS_yycJ KEGG:ns NR:ns ## COG: BS_yycJ COG1235 # Protein_GI_number: 16081089 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Bacillus subtilis # 2 266 3 266 268 178 36.0 1e-44 MLQFICMGSGSSGNCYCLFTENDGLMIDAGLGVRTLKRSFKENGLSLSHIHHIIITHDHA DHIKSVGSLSREFSLPVYATAKVHDGIERNFCVRNKVAPNLKRCFTKQVPLQVGEFMVTP FHVPHDSCDSVGYRISCQGIIFVLMTDVGHITDEMKEIIAEANYLVIEANHDEDMLAQGP YPAHLKARIASQTGHLPNSECGRALAENMTAELRHVWLCHLSEENNHPELARKTVEQILR SYGIVAGTDVQLDVLKRKSPSLLYKL >gi|281306462|gb|ADEF01000004.1| GENE 30 31945 - 33072 956 375 aa, chain - ## HITS:1 COG:BS_ydiA KEGG:ns NR:ns ## COG: BS_ydiA COG0611 # Protein_GI_number: 16077657 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate kinase # Organism: Bacillus subtilis # 7 369 1 325 325 141 29.0 2e-33 MTAISKLGEFGLIEQLTKDIQLQNSSTLTGVGDDCAVMHYPHSEVLTTTDMLMEGVHFDL TYIDLQHLGYKAAMVNISDVFAMNGTPRQMLVSLAIDKRFSVEDIEAFYNGLRMACNKWK VDIVGGDTTSSRTGVAISITCIGEAKSEEIVYRNGAKDTDLICVSGDLGAAYMGLMLLER EKSVYYKQVDEIRTKILKAKEQKNQALVTKLTHDLNSLGNFQPDFAGKEYLLQRQLQTEA RGDIIETLRAAHIHPTAMIDISDGLSSELLHICKESNCGCRIYEKNLPIDYQTAVMAEEL NLNVTTCALNGGEDYELLFTVPIGDHEKIQTLEGIKLIGHITHANLGAQLVTRDNQEFAL KAQGWNPLKSSTAAE >gi|281306462|gb|ADEF01000004.1| GENE 31 33252 - 34061 775 269 aa, chain - ## HITS:1 COG:BH1532 KEGG:ns NR:ns ## COG: BH1532 COG0005 # Protein_GI_number: 15614095 # Func_class: F Nucleotide transport and metabolism # Function: Purine nucleoside phosphorylase # Organism: Bacillus halodurans # 3 266 6 270 275 285 52.0 5e-77 MYKKIQETASWLKERMTTSPKTAIILGTGLGQLASEITDSYEFPYQDIPNFPVSTVEGHS GKLIFGKLGGKDIMAMQGRFHYYEGYDMKEVTFPERVMYELGIETLFVSNASGGMNPSFQ IGDLMIIDDHINFFPEHPLHGKNFPTGPRFPDMHEAYDKSLRQLADDIAKEKNIRVVHGV YVGVQGPTFETPAEYAMYHRLGGDAVGMSTVPEVIVARHCGIKVFGMSIITDLGIEGKPV EVSHEEVQEAANKAQPLMTEIMREIIKRS >gi|281306462|gb|ADEF01000004.1| GENE 32 33943 - 35121 752 392 aa, chain - ## HITS:1 COG:aq_1656 KEGG:ns NR:ns ## COG: aq_1656 COG1663 # Protein_GI_number: 15606758 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Tetraacyldisaccharide-1-P 4'-kinase # Organism: Aquifex aeolicus # 14 322 6 291 315 131 32.0 3e-30 MRTEGDYIKINEWLYPLSWLYGLGVRVRNQMFEMGILKQQAYDIPIISVGNITVGGTGKT PHVEYLVRLLGDLVKVAVLSRGYKRQSKGYVLAHEATLMKEIGDEPFQMKRKFPHIYIAV DKNRRNGIARLTTDEETQDVDVILLDDAYQHRYVKPGINILLVDYHRFIMNDELLPAGRL REPLSAKDRADIVIVTKCPKDLKPMEFRVLTKNLNLYPFQSLFFTALEYGKLKSFDTKKE CSLRSLKQQNVLLLTGIASPQHMKEDLKKYCKHIQPMAFADHHRFTSNDIMHLNDTFAQM EAPKIIITTEKDASRLTGIEGMTDEVKAALHILPIQIRFLLDSEEAFNHKIISYVQKNSR NSILVKRKDDDKSKDSNHSGNRPGTISFRDNR >gi|281306462|gb|ADEF01000004.1| GENE 33 35214 - 36983 1872 589 aa, chain - ## HITS:1 COG:all4590 KEGG:ns NR:ns ## COG: all4590 COG0616 # Protein_GI_number: 17232082 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Periplasmic serine proteases (ClpP class) # Organism: Nostoc sp. PCC 7120 # 43 588 47 608 609 313 38.0 6e-85 MKEFFKYVGATIVGIFAVGLILAILGVMSIIGMITSTQATQNVSKNSVLVLNLSGTLQEQ SDDNVFGLFAQDSFGSLGLDEILSAIKKAKETDKIKGIYIESGMFVADYASRQEIRNALL DFKKSGKKIVAYADSYSQGNYYIASVADKVFLNPQGMIDWHGIGAEPMFLKDLLAKFGIR FQVIKVGKYKSATESFTADKMSEPNREQTQAYINGLWANVCQAVSQSRKISVDKLNEYAD SLIAFNNPKDYVSAKLVDGLLYTDEVKKEVKKTFDLDMDDPINQVSIAEMKNVKEKSDGD EIAVYYAYGNIVDNPITGGIFGGQHAIVGPDVCKDLEALADDDDVKGVVLRINSGGGSAY ASEQMWHQIAELKKKKPVVVSMGGMAASGGYYMSCNANWIVAQPTTLTGSIGIFGMIPDR SQLLTQKLGIKFDEVKTNRNALMGSNARPMNEEEIGYLTRYIDRGYNLFRKRVADGRKMS INQVEEIAQGHVFLGQDALKIKLVDELGGLDKAIAKAAKLAKIDKYHTSNYPGGDDWLEQ LFKMTGGGNYLDEQMRTALGDYYEPFALLKTMNQQSMVQARIPFYLNIR >gi|281306462|gb|ADEF01000004.1| GENE 34 37033 - 37851 203 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 21 261 7 240 259 82 30 1e-14 MSCKTTFFCAIYRTFVVMKKVIVMGASSGMGQALATLLYKDGWKVGVAARRIEEMEQWKL AQQQLKSSTTAMDGQDNERILTAQIDVCAPEAPQAMLDLIHRMGGIDLYIHASGIGRQNP ELQEDIELNTVETNGVGFTRMIGTIYRYMAVNGGGQIAVISSIAGVKGLGAAPAYSATKA LQNTYVQALEQLANNKNLKIRFTDLRPGFVDTALLKGGDYPMMMNAQMVARHMLKAIYRK RHVCIIDWKWRILVSLWHCLPRCVWRHFRLVK >gi|281306462|gb|ADEF01000004.1| GENE 35 37978 - 40572 2090 864 aa, chain - ## HITS:1 COG:no KEGG:BF1045 NR:ns ## KEGG: BF1045 # Name: not_defined # Def: transglutaminase-family protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 29 864 32 892 892 946 54.0 0 MKKYLLVVLTLFCCQFANATFQQENNQAQNQTALVFKDRMQIIGNQFFDIKGLNVNDTEL QALQFLYAYMPVADVTDYPTAFYLDNIRTTFQIKNEMPWGHTIPDLLFRHFVLPLRVNNE NLDDSRKIFYHVLKDRIKGMSMQEAILEVNHWCHEHVTYTPSDGRTLSPLACMKNAQGRC GEESTFTVAALRAVGIPARQVYTPRWAHTDDNHAWVEAWADGKWYFLGACEPEPVLNLGW FNAPASRAMLMHTRVFGDYHGPEEVVLRTSNFTEINLIDNYAKTARVDFTIVDEQQRPVN HAKVEFKIYNYAEFYTAVTKYSDEKGQTFLTAGKGDLLIWASKNGHYGFAKASFGKDQHV TIALKRHASTDGQQMIFALDSLDIVPPIEQALLPTLTEEMIAHNKKRLATEDSLRKAYEA TFYQSTNDDEISKFLVTARGNWQTIEAFYKKHILQKERALALLRTLSDKDLRDMPIEILE DHFNAKSDQLCPRVENEMIIRPFKQQLQQAFDAATIERFQQNPALLVEWVQKNIRINSDK TALRIAQTPMGVWQSRLTDTRSRDIFFVDLARSLNIQARKDVVTSKVQYRTHEAWVDVDF EAKQQVTAPQGVLKLNYQPSTYLENPKYYTHFTISKIENGIPTLLNFEEGQVDMGGGTTW KSTFENGAKLDEGTYILVSGTRMASGNVKATYQIFNIKKNQTTTLDLHLRTSTTEISVIG NFDSESKFTLNHEEVSLLSQTGRGYYVLGIIGVGQEPTNHALRDIAKLKAEFDRWNRPFV LLFESEEDAKKFKANEFGQLPKRTIFGIDASGSIKKQIVNQMKLKDARQLPIFLIADTFN RVVFTSQGYTIGLGDQLQYTIHHL >gi|281306462|gb|ADEF01000004.1| GENE 36 40585 - 41346 541 253 aa, chain - ## HITS:1 COG:PM0526 KEGG:ns NR:ns ## COG: PM0526 COG3142 # Protein_GI_number: 15602391 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in copper resistance # Organism: Pasteurella multocida # 7 242 2 235 244 196 41.0 4e-50 MNKQDYQFEVCANGVDSCLAAQQGGAHRVELCASIPEGGTTPSYGEIKVARNILKSTRLH VIIRPRGGDFLYSPIEIERMIEDLHICKELGVDGVVFGCLTEEGVVDEALCRKLLTHCKG MSTTFHRAFDRCKNPFQALEQIINLGFDRILTSGLQPTAEEGMELLRELQFKAQGRIRLM AGSGVNEENIYRIAKETNIKEFHFSARKKVKSLMTFTNPNLHMGSTNNDDSYIEITSEDR VRNTILALLEPTT >gi|281306462|gb|ADEF01000004.1| GENE 37 41405 - 41845 372 146 aa, chain - ## HITS:1 COG:TM1080 KEGG:ns NR:ns ## COG: TM1080 COG0698 # Protein_GI_number: 15643838 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Thermotoga maritima # 5 143 2 140 143 148 50.0 3e-36 MNIKKVGLASDHAGFGLKEIIKEYLDEKGIAYQDFGTHSEASCDYPEYAHALASAVEKGD VYPGIGVCGSGEGMSMTLNKHQGIRAALVWQPEIAHMTRMHNDANVLVLPGRYMDKETAW QVLDEFFNTEFEGGRHVRRIEKIPVE >gi|281306462|gb|ADEF01000004.1| GENE 38 41852 - 43870 1821 672 aa, chain - ## HITS:1 COG:BH2352 KEGG:ns NR:ns ## COG: BH2352 COG0021 # Protein_GI_number: 15614915 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Bacillus halodurans # 10 670 9 663 666 444 39.0 1e-124 MNDIQLMTRAADNIRTLAVSMVEKANSGHPGGAMGGADFINVLFSEYLIYDPDNATWAGR DRFYLDPGHMSPMLYATLALQGKFSIDDLKNFRQWGSPTTGHPERDVTRGIENTSGPLGQ GHTFAAGAAVAEKFLETKLGSVMMQHKIYAYISDGGIQEEISQGTGRLAGALGLNNLIMF YDSNDIQLSTECNAVTAENTAMKYESWGWNVITINGNDVAEIRQALDKALQEKERPTLII GNTIMGKGALQADGSSYERNVKTHGAPLGGDAYKNTIENLGGDIHHPFAIAEDVQALYDN RAEELRKIVAQRHAAEDQWKAQHPEKATQMKEWFSGNAPKVDWSSLTQKAGAATRNASSA CLSLLAEQVPNMVCSSADLSNSDKTDGFLKKTQSMVKGDFSGAFFQAGVSELTMACMCIG MYLHGGVIPACGTFFVFSDYMKPAIRMAALMEVPIKFIWSHDAFRVGEDGPTHEPVEQEA QIRLMEKLKNHSGKDAVRVFRPADVEETTVCWQMAMENMETPTALIFSRQNIENLPEGTP YQEARKGAYIVAGSDEKFDVILLASGSEVSTLVAGSQLLRKEGVKVRIVSVPSEGLFRRQ SCEYQNEILPKNAKIFGLTAGLPVTLEGLVGANGKVFGLESFGYSAPYKVLDEKLGFTAE NVYKQVKDFLAK >gi|281306462|gb|ADEF01000004.1| GENE 39 44136 - 45263 876 375 aa, chain + ## HITS:1 COG:CAC3072 KEGG:ns NR:ns ## COG: CAC3072 COG0836 # Protein_GI_number: 15896323 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Clostridium acetobutylicum # 30 368 5 340 350 259 39.0 6e-69 MFLFMIYIAYICNEITLMNDNMNQSHNHLVIMAGGVGSRFWPMSTAEKPKQFIDVLGVGK SLLQLTLERFKDICPLDHVWIVTNKKYVHTVQEQLPMVPAQNILQEPMRRNTAPCIAYVS WRIKAIDPSANIVVAPSDHIVTDVFEFQRIIKSTLKFASETDAIITLGMKPHYPETGYGY IQADLSTSSLRNKEIFRVDKFREKPDLQTAQTYIQQNNYFWNAGIFIWNVKTIINAFRVY VPAIANIFESMMSIYGTAKEQEVIDARYGECENISIDYAIMEKAEEIFVCPANFGWSDLG TWSSLLAHTNKDLYGNGIIGQNIFLYDTNRCIVHATQSKKVVIQGLNDYIVVEKDGVLLI CKLSEEQRIKQFSEE >gi|281306462|gb|ADEF01000004.1| GENE 40 46553 - 49171 2525 872 aa, chain + ## HITS:1 COG:BH0007 KEGG:ns NR:ns ## COG: BH0007 COG0188 # Protein_GI_number: 15612570 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Bacillus halodurans # 8 815 5 803 833 842 53.0 0 MDENQTVDHDRIIKINIEEEMKSSYIDYSMSVIVARALPDVRDGFKPVHRRILYGMLGIG NTSDKPYKKCARVVGEVLGKYHPHGDSSVYGALVRLAQDWNMRYTLVDGQGNFGSVDGDS AAAMRYTECRLAKMGEHIMDDLDKDTVDMANNFDDTLVEPTVMPTKIPNLLVNGGNGIAV GMATNMPTHNLREVIDGCCAYIDNPDIELEELMQYIQAPDFPTGGYIYGLQGVKDAYETG RGRIILRAKAEIESDESHDKIVVTEIPYGVNKQQLIEYIANLVKEGKLDGIANANDESGR QGMRIVIDVKRDANANVILNKLFKMTALQSSFSVNNIALVNGRPRLLSLKECVKYFVEHR HDVTIRRTKFELKKAQDRAHILKGLIIACDNIDEVVHIIRGSKTPAEAQTNLEKRFDLDE LQSKAIVDMRLSQLTGLRLEQLHAEFDELEKLIAYLENILSDPELCKKVMKDELNEVKEK YGDDRRTKIIPDEHEFNAEDFYPNDPVVITVSHLGYIKRTPLSDFREQARGGVGSKGATH RNADFTEFIYPATMHQTMLFFTKKGRCYWLKCYNIPEGTKDSKGRAIQNLLNIESDDAIN AILRLRGLDDEEFINSHYVVFATKNGTVKKTCLEAYSRPRTNGVIAINIAEGDEVVDVRL TNGENELIMANRNGRAVRFDERTIRVMGRTATGVRGMRLDDGDDAVIGMIVVDDPINETV MVVSENGYGKRSSVEDYRKTNRGGKGVKTLSITDKTGRLVAIKNVTDDNDLMIINKSGIT IRLSVAECRVMGRATQGVRLINLSKKNDIIASVCRTMSSELEASFEEDNRSEWDKTQDEE NELRPSEPAEDQEDHAPLVDFDDIEDENDSDS >gi|281306462|gb|ADEF01000004.1| GENE 41 49202 - 50428 1470 408 aa, chain + ## HITS:1 COG:no KEGG:PRU_0814 NR:ns ## KEGG: PRU_0814 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 405 1 401 404 233 40.0 7e-60 MKKLMFLAAMALGVSTAFAADSDALKAILSAKTFVEAESLIKSNLSQLTSNEEKAKAYNK LVDLAMEKVNKEQEIIEKNMLAEQLKKGDTQPYDTVGYYDAVYAAITAGVEADKYDMMPN AKGKVRPKFHKNNQTRLFNIRPQLINGGQEASKKNDNQSAMKNFGLYVSSSEADLFKDVS NKPAYDQYLGEVARVAAVYAYQNKKVDLAHQYVDVALKDTAQDTHKEALNLKSYLITQGL TSNADSLKAIESLKQLYVQENGSDQVFGSLSAMYSNMNKKDELNQLISEKLQKDPNNFMA LAMKAQSAMNAGQWDEAIAGYKKAIAINDKDALVLTYLGFCLNSKAQALNASQEQKSLYA QSKVYLEKARDLDPNKERANWSYPLYQCYYTLYGADDSRTKEMEKMVK >gi|281306462|gb|ADEF01000004.1| GENE 42 50711 - 52576 1059 621 aa, chain - ## HITS:1 COG:STM3168 KEGG:ns NR:ns ## COG: STM3168 COG1032 # Protein_GI_number: 16766468 # Func_class: C Energy production and conversion # Function: Fe-S oxidoreductase # Organism: Salmonella typhimurium LT2 # 1 562 63 670 723 473 39.0 1e-133 MAVIGRMLEAAGYRVAIVPQPDWHGDYRDIKKLGKPKLFFGISPGCMDSMVNKYTANKRL RHEDAYSPDGRHDCRPEYPTIVYTKILKQLYPNIPVVLGGIEASMRRLTHYDYWQDKLQK CILCNAGADMILYGMGAKSVLTLCERLSAGEHIQHIHDIPQTVYLAQKDDIEGGIGEDDI LLNSHEECVQNKRAQAENFKHIEEESNKIHAQRLIQKVGQQYTVVNPPYPTLTTNEIDAY YDLPYTRVPHLKYKGKRIPAYEMIKFSVNIHQGCFGGCAFCTISAHQGKFVACRSKESIL SEVKKVIDMPDFKGYLSDLGGPSANMYGMSGKNHKACEHCKRPSCIHPQICPNLNTDHSK LLEIYHAVDALPGIKKSFVSSGVRYDLLLHTSKDAKTNESAQRYTRELIKNHVSGRLKVA PEHTSDHVLRLMRKPSFKQFEQFKQLFDKINQEENLNQQLILYFISSHPGCHAADMADLA VKTKKLNFQLEQVQDFTPTPMTVSTETWYTGYDPYTLEPVFSAKSPKDKLAQRQFFFWYK SEERQNIERELRKMGKQELIQGLLGDTPKFFDRKGKEKQQHSSNRKKKGKASYNPNFTDE QNKNYRTTSNQKRRPNPKKGH >gi|281306462|gb|ADEF01000004.1| GENE 43 52935 - 53306 432 123 aa, chain - ## HITS:1 COG:no KEGG:PRU_0788 NR:ns ## KEGG: PRU_0788 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 14 108 2 96 114 138 72.0 7e-32 MGNLNFMDHNIMYKIQTNPSGTRSMEITDEQLATIMKYSLFRNLVDSTGFIDEEVLDKLK LNVRSLLESEANLDKSLLDLCLDVIYHPNMKAFGLHQLVLLYIDWTNQQEQNDSANEEDK ANR >gi|281306462|gb|ADEF01000004.1| GENE 44 53371 - 55971 1817 866 aa, chain - ## HITS:1 COG:no KEGG:PRU_0789 NR:ns ## KEGG: PRU_0789 # Name: not_defined # Def: putative N-acetylmuramoyl-L-alanine amidase # Organism: P.ruminicola # Pathway: not_defined # 27 865 136 977 982 919 53.0 0 MTLRFIHLILCISASITLAAQSNSAHTRAWGDIEHHGRAWVTNLSKDNKISKGLQDRHIS LWASHGYYYDQQKKKWKWQRPNLFGTTEDLFTQTIVVPYLIPMLENAGANVFTPRERDWQ KHEVIVDNDDERPGTSYLEINVNGNWEKAPQKGFANRKSIYSDGENPFQQGTCRMAPSTK RKNPSLVSYQPSLPQAGKYAVYVSYQTVEKSVDDAQYIVYHKGQETTFSVNQQMGGGTWV YLGTFDFDAGDNPYNRVVITNQSRKKHRVVTTDAVRFGGGMGNIQRGGTVSGMPRAIEGA RYYAQWAGMPYSIYSGNGGENDYGDDVNVRSKMTNWLAGGSCYVPTLSGLNVPIELALAV HSDAGYSFDGKSLIGSLAICTTNYNGGRLNAGISRMTSKDFAEDLLNNAVNDLSTSRQKW TKRYLWDRNYSETRLPEMPSAILETMSHQNFPDMKLGQDPNFKFAFARSIYKTILRYINN QHGKNYVIQPLPPQNFNIRFTGKNRIKLSWEPQSDLKEPTAFPKSYNVYVATGTSGFDNG KNIKATSYAIELEPNVPYHFKITACNKGGESFPTEILSAYYSPTAKHTILVVNGFNRLSA PKVIDDAFSQGFDLNQDIGVSYGKTAGWAGCQTVFTKSTMGSLTESGLGFGGNELAGNFI MGNTFDYVRDHTEAIADTKQYNVVSCSMDAVLANKVKLGKYPCIDFILGLQKYDPHALKF YKTFTPRLQQMLQTYAEHGGALLVSGSYIGSDMFLDTEKAFLSKVLKVSYIPTLERQLNN VVQGLVLQMNFYHTPNEDHYAAQNPEVLSPVPGADCVMQYGNGTSAAVAYKDQHYRCFTM GFPFECIIDQNSKKQVMNGILKYLLD >gi|281306462|gb|ADEF01000004.1| GENE 45 55968 - 56528 561 186 aa, chain - ## HITS:1 COG:CC1900 KEGG:ns NR:ns ## COG: CC1900 COG0204 # Protein_GI_number: 16126143 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Caulobacter vibrioides # 2 177 4 182 196 122 34.0 3e-28 MLNKLCGWLLYHVMGWKKVVTVEHPKKYIICLAPHTSNWDFVIGQLYMHAEGMKSNFLMK KELFVGPLKIIFKKMGGIPVWRSKHTSLTDQLAAIANKRDTFQLCITPEGTRSLNTEWKL GFYYIALKANIPILLYGVDFEQKKIQCTKMLMPTGDIEREMKEIKQYFVGFKGKHPEKFS TGDLSA >gi|281306462|gb|ADEF01000004.1| GENE 46 56544 - 56816 318 90 aa, chain - ## HITS:1 COG:no KEGG:PRU_0791 NR:ns ## KEGG: PRU_0791 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 86 1 86 88 80 44.0 1e-14 MANKRDLKRTINYTCSDLFAECIAASLYSGKPAKDDVDALLKSILMVHNQFIRRVSHPEP GMEQKKYYQNLAKEFDKSVAEIVDQIANIY >gi|281306462|gb|ADEF01000004.1| GENE 47 57014 - 58654 1661 546 aa, chain + ## HITS:1 COG:TP0542 KEGG:ns NR:ns ## COG: TP0542 COG0205 # Protein_GI_number: 15639531 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Treponema pallidum # 1 545 1 559 573 646 55.0 0 MKTSALQVERAAYQPKLPKALQGAVKVQEGAPTQSVDDQEEIQKLFPHTYGMPLVEFVPG EHTESKRLNVGVILSGGQAPGGHNVISGLFDAVKKLNPENQLYGFLMGPGGLVEHHYVEI TKDFLDPYRNTGGFDMIGSGRTKLEKEEQFEKGLEILKKLDIKALVIIGGDDSNTNACVL AEYYAAKEYGIQVIGCPKTIDGDLKNEQIETSFGFDTATKTYAELIGNIERDCNSARKYW HFIKVMGRSASHIALECALQTQPNICLISEEIQEKDQTLNEIVENIASVVAHRAHEGNNF GVVVIPEGLIEFIPAIGRLIGELNDLLAAHGADYKDLDKDAQRKYILEHLSEANRSTFET LPEDVARQLSLDRDPHGNVQVSLIETEKLLSNMVAAKLEQWKKEKKYDGKFSPLHHFFGY EGRCAAPSNFDADYCYALGTSAVQLIANGKTGYMAIVKNTTSCTDEWKAGGVPITMMMNM ERRNGEMKPVIRKALVDLNGKPFKTLVEHREEWAKKTCYIYPGPIQYWGPSKVCDQTTKT LSLERE >gi|281306462|gb|ADEF01000004.1| GENE 48 58640 - 58762 74 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYKKPIEGKRCMQFTANFDRSNTTIYGCQPETGAQQLFSF >gi|281306462|gb|ADEF01000004.1| GENE 49 58964 - 59791 616 275 aa, chain + ## HITS:1 COG:yegX KEGG:ns NR:ns ## COG: yegX COG3757 # Protein_GI_number: 16130040 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Escherichia coli K12 # 63 269 65 270 275 166 43.0 5e-41 MTPNKTRKRRRTSKNRLFRRYPRWVIWVGGMFFAFFYMWFFYEFFVSPTGFRWRALFGDP DYPEGYEIHGIDISHYQGEIDWHLLKHAMIKGCPLRFVMIKATEGANRLDDNFNDNFYNA RKHGLLRGVYHFWSNKSSAREQAYYFLKQVHLEDGDLPPVLDVEHKPKDKSVEEFQRDVL TWLHIVEDKYHVKPIIYTYYKFKDAYLSAPVFDDYPYWIAHYYVEKVEYKGAWKFWQHTD AGRLPGIKGYIDFNIYNGSYYDLKKMTIGQQKDMW >gi|281306462|gb|ADEF01000004.1| GENE 50 60006 - 60872 523 288 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150006953|ref|YP_001301696.1| ribosomal protein L11 methyltransferase [Parabacteroides distasonis ATCC 8503] # 1 286 1 282 283 206 39 8e-52 MNYKIANCTISGQPALVQTAKDLLADALGEVGFESFEETQQGLKAYIPAENFDEQCLKEV LKNMPIQEIKLTYHLEDMEDKNWNEVWENAGFAPIDIDEQLIIYDAKSAFVPATDHKIYI GIEARQAFGTGNHQTTRMMISMLLKLRLSEKRVLDCGCGTGILSIAASKLGANKVIGYDI DEWSVNNTLHNATMNNVTNLEVFHGNAQVLSHVSGLFDVVLANINRNILLQDMTSFVELM SPGAILLLSGFYESDANLLIEKATQLGLVERNRKTEDDWCCLMFTKEK >gi|281306462|gb|ADEF01000004.1| GENE 51 61009 - 61980 1006 323 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879567|ref|ZP_06288298.1| ## NR: gi|282879567|ref|ZP_06288298.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 305 1 305 323 429 100.0 1e-119 MKKIALLALLIGTMPLGMQAQDDMYLIPSKSKKVANSSVVTQDSKVTHSGSDRDVDEYNR HGKFWSHYQKIGSDDRGNDIIEFQKGRGIYPDSTYIDTTFVGQYYDTMIDDDDYRYTQRM SRWDGYYDPWFYTSRRWRSYPYWHAGWGWYDPWYYGYAGYYDPWYDPWYAGYGYPYAYGY YGYGWGSPYYYSRYYGWAGYPVRYVYRTGHTGTLTYYDRSNFRSYYGRGYDSPSRNRRYG RDVRRYDNRYNSSGNTVTFGSRRPSPRYDSPTNSGRRNTTPTFQGPTRTPSGSFGSGSFG GGTTPRGSSGGFHGGGSFGGGRR >gi|281306462|gb|ADEF01000004.1| GENE 52 62005 - 63681 1750 558 aa, chain + ## HITS:1 COG:no KEGG:PRU_1026 NR:ns ## KEGG: PRU_1026 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 12 558 3 523 523 395 43.0 1e-108 MRIYNRIEMKNKYILSALLLLGTATIGAQETYENTKLIDNDLNGTARYVGMGGALDALGA DISVIGSNPAGLGLMTKSRAEVSFGFVSQPGVSAFQQGNPTNASFDQVGFVYVMRNPRDD NSGLNFAVNYHKSRNFDYILSAVGDLKNASQNTLSFLKAIYGDRAKDGTSIFNLETTKNG MIRGTHPFTSQLDNLYYNNLMVDHNNAVSYSTATGYDMQRAHTGYIGTYDVSVSGAISPR FYLGGTIGFHDVHYTGTGEYVEDLVDISNKPLTALMVHDEKTITGMGGDFKLGAIFLPIE NSPFRIGLSVATPTLYRLTINTRAYMRHNLSASLSMQNGYSGGTTNESYSFKIDTPWNFG ISLGHTVGNYLALGASYNYADYGSMNTRVNEGGEYDWYTNSYYEDSSDDTNMNEHTKQTL KGVSTVKLGAEFRPVNNLALRAGYNYISPMYQKNAYKDVTIDSYGSNYSTATDYINWDST SRFTLGVGYQMKNFNIDLAYQYSAQNGDFHPFMDAYGDYYYINTATKELQMDKIDNYANP VKVRNKRHQLLLTLGYRF >gi|281306462|gb|ADEF01000004.1| GENE 53 63947 - 64153 83 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKISKIENFNRQTPNKNGLIFTNKTSLGVRTLTYHAWKHVLEVLFTYFSGIKACKLQAYL NVLTAKKG >gi|281306462|gb|ADEF01000004.1| GENE 54 64488 - 64937 263 149 aa, chain + ## HITS:1 COG:PH1969 KEGG:ns NR:ns ## COG: PH1969 COG2872 # Protein_GI_number: 14591706 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain # Organism: Pyrococcus horikoshii # 12 145 104 233 404 66 33.0 1e-11 MLEREVSFPPAHTAEHLLNQLMTRKFGCKRSDNAHIERKKSKMTFRLESKPDRHAEKEIE TRMNELIQQDLPITFEEVDRQHLPEGVSLERLPANVPDLIRICRIGDYDICPCIGKHVRS TRQIGKFELLGTNWDEHQKTYRIRFKVIP >gi|281306462|gb|ADEF01000004.1| GENE 55 65009 - 65992 662 327 aa, chain + ## HITS:1 COG:BS_yyaM KEGG:ns NR:ns ## COG: BS_yyaM COG0697 # Protein_GI_number: 16081133 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 88 317 70 304 305 71 24.0 2e-12 MNKFLNLQYRDKKHTHSSNKVPLLAHLSMFTACAIWGLMAPIGKDAMSNGITGVDMVSFR VLGGAILFWMTSFFVKKEKVPLHDIFWFIGAAVFGLVCNQCCFTIGLSLTSPINASIVTT SMPIFAMLLAALILKEPITSKKAMGVFVGCCGALILILTSMSAANAKVGDIRGDLLVLGA QLSYAFYLSVFNKLVKRYSVFTVNKWMFLWATCLIWPFSFCQVSDLPWQSITVTTWMETA YVVFFGTFVGYILIISAQKVLRPTVVSTYNYVQPIVAVIVTVATGIGIFKWTHALAIVMV FSGVWLVTKSKSKHDEAQSQKGELTKE >gi|281306462|gb|ADEF01000004.1| GENE 56 66177 - 66818 661 213 aa, chain - ## HITS:1 COG:no KEGG:PRU_1361 NR:ns ## KEGG: PRU_1361 # Name: not_defined # Def: HD domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 1 209 1 209 218 268 61.0 8e-71 MIDSNVSLDLMTFIEQNILPKYNEFGASHGLAHVQQVIKNSMELARKIGADVNMAYTVAA YHDIGMSGPRAIHHLTGGKILASDARLKRWFSPEQIRIMREAVEDHRASASHSPRSMYGK IVAEADRDLQPEHVFQRTVQFGLEQNPEKSRQEHWQRFQQHIEAKYGNTGYIKLWIANSP NHQYLKNIRLILEDKEELRKQFDYFFDKEKNGK >gi|281306462|gb|ADEF01000004.1| GENE 57 66911 - 67198 164 95 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRIIPCISKIAHAVPIITGTAAPVNVLGRAAKNQAFAELHRTVEVCIIKFLFYSNGDTQT YANVHIAAATHGCTTTLQYVSSAYLPIQRYAETTE >gi|281306462|gb|ADEF01000004.1| GENE 58 67056 - 67967 607 303 aa, chain + ## HITS:1 COG:VNG1075G KEGG:ns NR:ns ## COG: VNG1075G COG1575 # Protein_GI_number: 15790173 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Halobacterium sp. NRC-1 # 4 302 2 311 311 140 33.0 3e-33 MMQTSTVRCNSAKAWFLAARPKTLTGAAVPVMIGTAWAILDMQGMIRITPVVLCFLFAFV MQIDANFINDYLDFVRGNDDETRLGPRRACAQGWILPATMRVGIGLTTLLACLVGLPLIY YGGMEMLLVGAVCVVFCFLYTTHLSYLGMGDILVLVFFGIIPVCVTYYLAVPSYAAHITW QVFLSSIACGLVIDTLLIVNNYRDIENDRRAHKMTMVVMMGASLSRTAYLMLGWVACMIG LVFLFHGHMWAFVLPLFYALLHTLTYRRMCRIRQGKALNLILGETARNIFIYGILLTVGL IIS >gi|281306462|gb|ADEF01000004.1| GENE 59 67996 - 70248 2039 750 aa, chain - ## HITS:1 COG:no KEGG:PRU_1359 NR:ns ## KEGG: PRU_1359 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 750 29 776 776 705 49.0 0 MDVDGNITQMNDQRRNNAKDSTSQDKEIPKGLKVWTVDNRFGDIRQAIPDTLMHMYPNSI FTSGLRGEYNTTGNLGAPRISRLFVDRLRDDEQFIFTQPYDYFIVAPDDYHFTNTLSPIT SLTYNTAGDRTNGEDHLTAKFAINAGKKIGVGFKFDYLYGRGFFANQASSHFNYSLHGSY LGERYQAHLLFSTNHQKNTENGGITDDKYITNPESFDDNYQTSEIPTVLQQNWNRNDHHH VFLTHRYNVGFNRKVPMTPDEIKAKKFALKAKKENDATKKTKEALRKAKKEGRKLDPKTL ENEKATAGRPDDAAIAGVEPSTTHATDSTRIQVNGQHAADSLLAKTKQAKEDTSWFKNEY VPVTSFIHTLKFDDYKRIYQAYQTPDNFYANNYRLIGPFTGDSIYDDTKHYRVQNTFAIS LLEGFNKWAKSGLKAFVSHELRYFSLPDSSGTSTYNENSVYVGGQLSKRQGKTLHYSVTG EVGVAGKDAGKIDIEAQTDLNFKLFGDTLRLAAQGFFRRYEPTFYYRHYHGRHFRWDNDD LGSITHTRIEGLLKYEKTKTTLRVAVDELTNYTYLAQAYQVNEKYQRTGTQVGVRQSSTP INVLTLSLGQDVAWGPLHWESVVTFQNASVQSAIPLPKLNVYSNLYFKFKIAKVLSCHTG ADVRYFTKYEAPDYSPALGQFVVQENTERTILGNYPIVNVYANFHLKQTRFFVMYSHVNE DSGTRNSFLVPHYPINGRILRFGVSWNFFN >gi|281306462|gb|ADEF01000004.1| GENE 60 70323 - 70544 206 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879574|ref|ZP_06288305.1| ## NR: gi|282879574|ref|ZP_06288305.1| hypothetical protein HMPREF9019_0738 [Prevotella timonensis CRIS 5C-B1] # 1 73 1 73 73 126 100.0 5e-28 MSAKYLRRFRGNGDKPRDLFFWIRNILNIIFMVGAVVGVIFYFFTEQETLGIIIILTAMF FKMAECSLRIFHS >gi|281306462|gb|ADEF01000004.1| GENE 61 70634 - 71473 683 279 aa, chain - ## HITS:1 COG:no KEGG:PRU_1357 NR:ns ## KEGG: PRU_1357 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 113 278 37 202 205 120 40.0 5e-26 MKKNILFLLLWIPLFVQAQAVLTPEQRLEKAKQEAKAAKQAVKEAKKAARKAVKLAKKQQ TKHDLQPAKQKTTGGDTISLTNSSEWIVPQSVTSKKPSHKNQDDKAFEKPSKEADYLAGA VSQNPQGKVVFTLQLDVPQKSANELYNTVYQYMNELTKEKNQISSRVVLVNPKQHVIVAR FCEWLEFSNSFLSLDRTEFYYMLTAKCTEQHLELTLSHIHYDYEKNRPTHLKISAEEWIT DEIALNKQKNRLLRLSGKFRKHTIDRKNEIFDQLTELLL >gi|281306462|gb|ADEF01000004.1| GENE 62 71623 - 73659 1624 678 aa, chain - ## HITS:1 COG:SP1238 KEGG:ns NR:ns ## COG: SP1238 COG0556 # Protein_GI_number: 15901100 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Streptococcus pneumoniae TIGR4 # 3 674 10 661 662 714 55.0 0 MNFKLTSKYQPTGDQPQAIQQLTDGVRRGDPAQVLLGVTGSGKTFTVANVIQNIQKPTLI LSHNKTLAAQLYEEMKGFFPENAVEYYVSYYDYYQPEAYLPSSDLYIEKDLSINDEIDRL RLSAVSALLSGRSDVVVVSSVSCIYGMGGPSAMTNSIISIQKGQHIDRNDFLRKLVEALY VRNDIDLQRGNFRVKGDTVDIAMAYSNNVLRITWWDDEIETIEEVDSTTFHQLESFEEYH IYPANLFVTSKEQTERAIHEIQNDLVKQIDYFEEIGDQLKAQRIKERVEYDMEMIKELGY CSGIENYSRYFDGRQAGERPYCLLDFFPKDYLMVIDESHVSVPQISAMYGGDRARKRNLV EYGFRLPAAFDNRPLRFEEFQDMLHQVIYVSATPADYELQEAEGVVVEQLIRPTGLLDPE IDVRPSENQIDDLLDEILQRTERGERVLVTTLTKRMAEELTEYLLNHDVRANYIHSDIGT LERVKIMNDLRAGMFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSHRSLTQTAGRA ARNIHGKVIMYADTITDSMRKTIDETARRRSIQLKYNEEHHITPTQIVKDIKNALPTAKE KMKEKRYSTVAAQQAYMEPLGGAFAADPIVQQMTHEQLEKSIADTTAMMKQAAKDLDFLQ AAQYRDEIIRLQTLLEQK >gi|281306462|gb|ADEF01000004.1| GENE 63 73911 - 74804 642 297 aa, chain + ## HITS:1 COG:BMEI0587 KEGG:ns NR:ns ## COG: BMEI0587 COG4105 # Protein_GI_number: 17986870 # Func_class: R General function prediction only # Function: DNA uptake lipoprotein # Organism: Brucella melitensis # 64 182 102 220 309 69 32.0 8e-12 MKKVFFITISIVLFFTNCANEFNAVYKSSDTNYRYEYAKECFVNGKYTRAITLLNDLIVV QKGTDHAQESLYMLAMAQYKTGDYESASQAFKRYMQSYPKGQYAELASYYIGESLYMSTP EPRLDQSQTVSAIAAFQEFLDLFPEAHLKNQAQKRLFELQDKLVKKELYSAQLYYDLGSY FGNCTSGGNNYEACIITAENALKDYPYSSMRENFAVLIMKSKFELAEQSVESKRLERYQD AEDECYGFINEYPDSKERSTAEKYIRRCKQFTRSAEPVTHQETSYLWRGNSSIDNLF >gi|281306462|gb|ADEF01000004.1| GENE 64 74885 - 75217 463 110 aa, chain + ## HITS:1 COG:no KEGG:PRU_1354 NR:ns ## KEGG: PRU_1354 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 110 1 110 112 157 82.0 2e-37 MDYKKSKAPTNTTTRNIMDLCDKTGNIYESVAIIGKRSNQIAAQIKQDLNKKLAEFASYN DSLEEVFENREQIEISRYYEKLPKPTLLATQEFIEDNTYYRDPSQDKNEE >gi|281306462|gb|ADEF01000004.1| GENE 65 75220 - 75675 346 151 aa, chain + ## HITS:1 COG:no KEGG:PRU_1353 NR:ns ## KEGG: PRU_1353 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 151 1 153 153 95 38.0 7e-19 MIQRKQTLFLVLAIILSITCLCMPIGIVEPIGMGTPTVLWNLGTVVPGSGVQFSNWPLFA FLAVSVVLEIIAIFTYHRRMLQVKLCSWSIVFSLAWYAYFAFSILNGFGKSFTFHLQFAA CLPLVAIIALVLARRGVIQDEKLIRSADRIR >gi|281306462|gb|ADEF01000004.1| GENE 66 75949 - 77199 1594 416 aa, chain - ## HITS:1 COG:BH3559 KEGG:ns NR:ns ## COG: BH3559 COG0126 # Protein_GI_number: 15616121 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Bacillus halodurans # 2 414 5 391 394 352 49.0 1e-96 MTIDQFNFAGKKAIVRVDFNVPLNDKGEVTDDTRIRGALPTLKKILKDGGAVIMMSHMGK PKGKVKPELSLEQIVKNVSKALGVDVKFAKDCANAEKEAASLQMGEALLLENLRFYAEEE GKPVGVEKGTPEYDVAKSEMKTRQADFAKKLASYADVYVNDAFGTAHRKHASTAVIADYF DNDSKMLGYLMEKEVSAIDSVLKNAQHPFTAIIGGSKVSSKLGVIKNLLDKVDNLIIGGG MGYTFIKAQGGKIGKSLHEDDLMPEALNVMKAAKEKGVNLSLSVATVCGKDFSNDTERKV FPINEIPDEWEGMDASEESLKIWKDIILKSKTILWNGPVGVFELENFAHGTGEIAKYVAQ ATQDNGAFSLVGGGDSVAAVNKFGLADKVSYVSTGGGAMLEAIEGKTLPGVAAIKG >gi|281306462|gb|ADEF01000004.1| GENE 67 77960 - 78814 675 284 aa, chain - ## HITS:1 COG:no KEGG:PRU_0459 NR:ns ## KEGG: PRU_0459 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 26 280 29 284 287 233 46.0 4e-60 MKRQFIYILLLSFSITVKAQDIQYQPTDSIKIEQWLKQGSQQKENQNMVSYFARLLKGIP YVAKTLEINSTEKLIINTRELDCTTYVENVLALYLCHKNKQTRFANFCTYLRLIRYHNGE VSYGKRLHYFTEWIVDNVRMGYVRPVAVNQPPFTAKQLVNLHFMTSNTHLYPMMHHRPEV KKAIREMEKQVSGKSYLYIPKDSILNTPLLRSAIHDGDIIAMLTSKKGLDTSHVGIAVWQ SDGLHLLNASSIRGKVVEEPKTLYQYMQGQRTQIGIRAVRCNGM >gi|281306462|gb|ADEF01000004.1| GENE 68 78816 - 79868 754 350 aa, chain - ## HITS:1 COG:no KEGG:PRU_0458 NR:ns ## KEGG: PRU_0458 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 27 349 31 349 353 285 45.0 2e-75 MQSVSLNADTIPERKGFWQQIKQQAGKIIESFTAVDTNYVEPQHYKFTMMLQNTNTYEKY RLENNEGQTITLAPSPSVKVGPFVGYQWIFLGYTVDLKNFNKNKDRTEIDLSLYSSRIGI DLFYRKMGNHYYIRNLFINHQTNTKALEDLPFNGFQSSIKGFNLYYIFNNKRFSYPAAFS QSTVQRKSAGSFLAGIGYTRHQTSIDIGELNRMVKEKIQFPSNHLATNEPHVVFGDYRYT DFSVSAGYGYNWVFAHNWLLASSLSAALGYKQSDGDIQQDNKWSAAYHVSKLNVDALGRF GLVWNNTKWYAGTSAIIHYYRFNRQQLTSNTLFGNLNIYVGFNFGRYKKQ >gi|281306462|gb|ADEF01000004.1| GENE 69 79928 - 80911 863 327 aa, chain - ## HITS:1 COG:BH1248 KEGG:ns NR:ns ## COG: BH1248 COG0673 # Protein_GI_number: 15613811 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Bacillus halodurans # 9 253 9 250 340 103 28.0 5e-22 MIHISWGFIGCGEVTELKSGPAFNAVEGSHVEAVYSRNADKARDYAERHHIKKWYTDALQ LINDPQINAIYIATPPSSHATYAIMAMKAGKPVYVEKPLAASYEDCARINRVSEQTGIPC FVAYYRRYLPYFQKVKDIIKNGTIGTITNVQVRFSVPPRDLDHYDGQHRPWRLQPDIAGG GYFYDLAPHQLDLLQEYFGVITRAHGYVANRAHLYDAEDTISACFCFENGLPGSGSWCFV GHQSAKEDRIDVIGVKGSLSFSVYNYDPIQLITSEGITNITVPNPSYVQLPIIKSVIEDL QGIGVCTCTCVSATPVNWVMDRILGKL >gi|281306462|gb|ADEF01000004.1| GENE 70 80915 - 82216 1323 433 aa, chain - ## HITS:1 COG:MJ0326 KEGG:ns NR:ns ## COG: MJ0326 COG2252 # Protein_GI_number: 15668500 # Func_class: R General function prediction only # Function: Permeases # Organism: Methanococcus jannaschii # 1 431 3 432 436 345 47.0 1e-94 MDLITKFLGFDPKTMKMRTELIAGATTFLTMSYILAVNPSILSSTGMDKGALFTATALAA AISTLLLAFMAKLPFAQAPSMGLNAFFAYTLCQAMGYTWQQSLAIMLIEGVVFILITFFN VRELILDSIPKNLRYAISAGIGMFIAFIGLKNAGIIVAKEGTFVGLGAFTHESILGIIAI LLSGILMARNVKGSLFYGIIATTLIGIPLGVTILPEGWLPVSAPQDIRPTLCQFDFTDLL NIKTLLVVFSLLIVNIFDTIGTLVGLSEKTGIVQADGTIPRVKEAMMSDAIGTTCGAMLG SSTITTYIESASGIAEGGRSGVTSAFVGLLFLLSLFLSPIFLLIPSAATSGALVLVGVLM LDSVKKLDLNDVSEAFPAFITMITMVLCYSIADGICLGMLSYVILKMCVGRWRDLNVTLV VLGILFVINFIVS >gi|281306462|gb|ADEF01000004.1| GENE 71 82240 - 83025 607 261 aa, chain - ## HITS:1 COG:CAC3396 KEGG:ns NR:ns ## COG: CAC3396 COG2816 # Protein_GI_number: 15896637 # Func_class: L Replication, recombination and repair # Function: NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding # Organism: Clostridium acetobutylicum # 55 255 67 268 271 184 39.0 1e-46 MNAYYFIFCKTDVLLEKLPNGQYTIPLEETCPVTCKPWTHIMDITTLTDGTPVKALRIDA PITNNPKYEMCGLRASFYKLPHDLYLMAGKCQELLYWDYNTKYCGVCGAPMQMHTHISKR CTQCGKEVWPQLATAVIVLIKKGDEVLLVHAKNFKTDFYGLVAGFVETGETLEEAVHREV LEETGLTIHHLKYFSSQPWPFPSGLMVGFTADYESGELSLQAAELSKGGWFTKDNLPQIP EKLSIARKLIDHWLNETINEK >gi|281306462|gb|ADEF01000004.1| GENE 72 83022 - 84806 1444 594 aa, chain - ## HITS:1 COG:CAC0353 KEGG:ns NR:ns ## COG: CAC0353 COG0737 # Protein_GI_number: 15893644 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Clostridium acetobutylicum # 27 565 542 1079 1193 216 28.0 1e-55 MKKIITGCIIALCMSTMSMANHKTIHLRVIQTSDVHGSFFPYDFINRKPKSGSMARVISY VDSLRTHYGKNLLLLDNGDILQGQPTCYYYNYVKSALPNVAASVINYMKYDAQTVGNHDI ETGHNVYDKWISEVKCPILGANVIDTRTGKPYLHPYTIVEREGVKVAILGLLTPAIPNWL NEKLWSNLRFDSMVESARYWIAELKKNEKPDIIIGLFHSGKEGGIITDTYEENASLRIAK EVAGFDLILFGHDHTAHSSVIENVEGKKVVCLNPANNARMVADAEIEITLDNSAPSVTHH KRVLNKQVSGKLVDIRQQPINQAYIEHFQSEIDSVKAFVTRQIGAFKRTIYSRDSYFGSA PFTDLIHNLQLRVTGADLSFNAPLAFDAQIKAGPVYVSDLFNLYKYENQIYVLKMTGQEI KNYLEMSYDLWVNTMTSAEDHIMLINNRAKADQQRYGFKNLAFNFDSAAGIDYEVDVTKP NGNKVNILKMSNGEPFDLHKTYKVAMNSYRGNGGGELLTRGAGIPLAEIPKRILVETQHD QRYYLMKWIEESGEMDPQANNNWKFVPEKWTQPAIQRDKTLIFGQPKGVDDNEK >gi|281306462|gb|ADEF01000004.1| GENE 73 85018 - 86769 1746 583 aa, chain - ## HITS:1 COG:CAC2337 KEGG:ns NR:ns ## COG: CAC2337 COG1109 # Protein_GI_number: 15895604 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Clostridium acetobutylicum # 14 560 6 556 575 454 43.0 1e-127 MANNTELIAQCEAKAKQWLSPAFDEDTQREVKAQLEAEDKTELIESFYKDLEFGTGGLRG IMGAGSNRMNIYTVGMATQGFANYLKKNFKDRADIAVVVCHDCRNNSRKFAETVADIFSA NGIKAYLFDEMRPTPECSFAIRHLGCQGGVNITASHNPKEYNGYKAYWEDGAQVLAPHDM GIIEEVNKVSVEDVKFQGNKALIQIIGEDIDQAYLDAVKTVSIDPEVIKRQHDLKIVYTP LHGTGMTMIPRSLKYWGFDNVHCVKEQMVKDGNFPTVVSPNPENGEALTLALRDAKALDA DIVMASDPDADRVGMACKNDKGEWILINGNQTCLIFLYYIITNRKNMGLLKPTDFIVKTI VTTEVIKKVAEKNHIEMCDCYTGFKWIAREIRIAEGKKKYIGGGEESYGFMAADFVRDKD AVSAMCLLAEICAYAKDQGKTLYDLLMDIYLEYGYSKETTINVVRPGKTGADEIKAMMEQ FRSNPPKELGGSKVVLWKDYQTLEARDINNHITKLDMPDTSNVLQWFCDDDTKVSVRPSG TEPKIKFYLEVKGTMKSAADYNRCDAEADQKVKAIKKSLHLDA >gi|281306462|gb|ADEF01000004.1| GENE 74 86922 - 87239 253 105 aa, chain + ## HITS:1 COG:no KEGG:PRU_2631 NR:ns ## KEGG: PRU_2631 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 94 1 94 95 128 70.0 7e-29 MFYKGIIIAISTFLIIGIFHPIVIKTEYRWGTRPWWIFLLLGIAFIVGSLFIEEVLWSSL LGVLGASSLWSIGELFEQKKRVEKGWFPMNPKRKNEYQPIQSTKE >gi|281306462|gb|ADEF01000004.1| GENE 75 87321 - 87791 416 156 aa, chain + ## HITS:1 COG:BS_yydA KEGG:ns NR:ns ## COG: BS_yydA COG1576 # Protein_GI_number: 16081075 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 1 154 1 158 159 108 38.0 4e-24 MKVELLLIGKTVNRHFVAGIEDYVSRINHYLPLTVTVIPELKNNKKMTESQQKTLEGQLI LKKIMPSDTIVLLDEHGKELRSVELAAWLEKKQSTTRKIVFVIGGPYGFAPEVYERADEQ LSLSRLTFSHQMVRLIFTEQLYRACTIIKGEPYHHE >gi|281306462|gb|ADEF01000004.1| GENE 76 88018 - 89793 1498 591 aa, chain - ## HITS:1 COG:lin1989 KEGG:ns NR:ns ## COG: lin1989 COG0488 # Protein_GI_number: 16801055 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 8 589 4 627 630 443 39.0 1e-124 MATQIPYLDVQNLTKSFGDLLLFHQISFSVAEGQRIGLIAKNGTGKSTLLSVITGKEGKD EGSIIFKNDLKIGFLQQKSVFAPTESVLDACFNHQGVPEKVLKAKQILTQLRIDDLEQPM GQLSGGQQKRVALANVLITEPDFFILDEPTNHLDLQMVEWLEGYLSRGNKTLLMVTHDRF FLDRVCNCILELDQQQMFTYRGNYSYYLEKRQERMDQMRSEVMRANNLYRTELEWMRRMP QARGHKAKYREEAFYELERKAKQKVEERQLRLKASNVYIGSKIFECQYVSKAYDNKIILK DFYYNFSRFEKLGIIGNNGTGKTTFIKMLMGLVEPDSGKFDIGETVRFGYFSQEGLAFDQ QQKVIDVVTDIADHIRLGGGKTMSSTQFLQYFLFTPEQQHSYVYKLSGGELRKLYLCTVL MQNPNFLILDEPTNDLDIPTLQILEEYLQDFPGCVIIISHDRYFMDKVVDHILVFKGEGE IQDFPGNYTQFREWDSLQPADTSKEEKREKTPVKSYRSDEKKKMSYKEKREFETLESEIA KLETEISNLEAELCSGSLSIEELTDKSILLPKLKKELDDKSMRWLELSELG >gi|281306462|gb|ADEF01000004.1| GENE 77 89796 - 90395 395 199 aa, chain - ## HITS:1 COG:CAC2636 KEGG:ns NR:ns ## COG: CAC2636 COG0218 # Protein_GI_number: 15895894 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Clostridium acetobutylicum # 1 191 1 189 200 146 44.0 2e-35 MDITQAKFVLSSPNLGKCPTDQRIEYAFIGRSNVGKSSLINMLCNHQGLAKTSSTPGKTL LINHFLINNDWYLVDLPGYGYAKRSKKVQEEIQKLITTYLLHREQLVNVFVLIDVRHEQQ KIDREFIDWLGLNEIPFTIIFTKADKLGTVKAKMNVDKWMSQLKDVWEELPRYFITSSEK KTGRQELLDYIDEINQSLR >gi|281306462|gb|ADEF01000004.1| GENE 78 90813 - 91850 697 345 aa, chain + ## HITS:1 COG:all3208 KEGG:ns NR:ns ## COG: all3208 COG4222 # Protein_GI_number: 17230700 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Nostoc sp. PCC 7120 # 39 322 58 360 394 64 27.0 3e-10 MNKFWCFLLFSLSCITLAAQDSLHVVRVNAQRSFPHEIPAGNYSGITYLGNDLYAVVSDK SPNDGFFIFKISLDSITGEVLRVENLGFRGDREQAGDLEAIAYVPTTKKLYISRETDNTI REYTLDGKLSDRKILVPSIYQRARGNYGLESLNFNPTTQMFWTCNEGTLKGDGEQATSTN QVKNRLRLQSFSADFTPLHQYTYQMETPEADKRAYLYGMGVVEVTGLDDGSVLVMEREFY TPTKKMGAIVNNKLFRVMPQVAFAINTNDSLTADSPYLQKQLVTSWRTTLKLFHHEIANF EGMCLGPQLADGSQVLVFVSDSQNQAGGVMKDWFKTLVFKMPSEK >gi|281306462|gb|ADEF01000004.1| GENE 79 92079 - 92273 168 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879593|ref|ZP_06288324.1| ## NR: gi|282879593|ref|ZP_06288324.1| hypothetical protein HMPREF9019_0758 [Prevotella timonensis CRIS 5C-B1] # 1 64 1 64 64 114 100.0 3e-24 MDVLQYIVIFIIILLALGYACRRIYLALRNSKDRCYGCKGCELHDQILKKQATKHEKPQC FQKK >gi|281306462|gb|ADEF01000004.1| GENE 80 92392 - 93672 1529 426 aa, chain - ## HITS:1 COG:aq_479 KEGG:ns NR:ns ## COG: aq_479 COG0112 # Protein_GI_number: 15605959 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Aquifex aeolicus # 1 424 5 410 428 492 59.0 1e-139 MEKDVKIFDLIEKEHQRQLKGMELIASENFVSDEVMQAMGSYLTNKYAEGLPAKRYYGGC QVVDEVENIAIDRVKKLFGAEFANVQPHSGAQANAAVFLAVLNPGDTFMGLNLDHGGHLS HGSSVNTSGILYHPIGYNLSKETGRVDYDEMEQLAREHKPKLIVGGGSAYSREWDYKRMR QIADEVGAIFMVDMAHPAGLIAAGLLDNPVKYAHIVTSTTHKTLRGPRGGIILMGKDFEN PWGKTTKKGQLKMMSQLLNSAVFPGIQGGPLEHVIAAKAVGFGENLKPEWKEYAQQVKKN ASVLASALIERGFTIVSGGTDNHSMLVDLRQKYPDLTGKVAENALVSADITVNKNMVPFD TRSAFQTSGIRLGTAAMTTRGAKEDIMLLVAELIEEVLNAPEDEAVIEKVRNKVNETMKS FPLFAY >gi|281306462|gb|ADEF01000004.1| GENE 81 93791 - 94246 403 151 aa, chain - ## HITS:1 COG:PAB1499 KEGG:ns NR:ns ## COG: PAB1499 COG1781 # Protein_GI_number: 14521525 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, regulatory subunit # Organism: Pyrococcus abyssi # 5 144 3 144 152 124 45.0 7e-29 MNKKERLVAAIENGTVIDHIPADKTYQVMNLLELQSLNTPVTIGNNFVSKKVGKKGIIKV SNKFFSDEEISRLSVVAPKIVLNIIKDYEVVEKKTVETPDELRGIVKCNNPKCITNNEPM ETVFHFVDKKNGLLKCHYCDKEQDINKVELC >gi|281306462|gb|ADEF01000004.1| GENE 82 94275 - 95222 890 315 aa, chain - ## HITS:1 COG:ECs5222 KEGG:ns NR:ns ## COG: ECs5222 COG0540 # Protein_GI_number: 15834476 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Escherichia coli O157:H7 # 1 300 5 305 311 312 53.0 5e-85 MQKNHFITIANLSKDDLMYLLSMAEEFEKHPNRELLKGKVVATLFYEPSTRTRLSFETAA NRLGARVIGFSDAKASSVAKGETLKDTILMVSNYADVIAMRHYIEGAAQYASEIAPVPII NAGDGAHMHPSQCLLDVYSIYKTQGTLENLNIYLVGDLKYGRTVHSLIMAMRHFNPTFHF IAPKELSMPMEYKIYCKEHGIKFQEHTVFNEKVLADADILYMTRVQKERFSDLMEYERVK NVYILRNDMLCNVKENMRILHPLPRVNEIAYDVDDNPHAYYIQQAKNGLFAREAIFCYCL GITLEDIKKDKTIIE >gi|281306462|gb|ADEF01000004.1| GENE 83 95238 - 97676 1568 812 aa, chain + ## HITS:1 COG:aq_624 KEGG:ns NR:ns ## COG: aq_624 COG5009 # Protein_GI_number: 15606057 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Aquifex aeolicus # 43 774 1 669 726 280 30.0 6e-75 MFSLELPAKVVINFYFYEFIQRKIVFLHQIIKKLLQSRKDKVMRKVFIHVLWKILIIVSI LLVLAFTAIWKGWIGYMPDVEDLQNPISRFATQVYSADGKVLGTWNFNKENRIVIPYSKI SPHLVHALVATEDERFYEHSGIDFIALGRAIVKRGILRQENAGGGSTITQQLAKQLYSGT AHSTLERVLQKPIEWVIAVKLERNYTKEEIIALYLNYFDFLHNAVGIKTASNTYFNKEPK DLTINEAATLIGLCKNPSLFNPVRYPQRCTERRNVVLSQMQKAGYLSKAEYHQHADEKLV LDFHRIDHKDGSATYFREFLRQYMMATHPQRSDYPSWNQNQYVFDSIAWVSDPLYGWCNK NFKKDGKPYNVYTDGLKVFTTIDSRMQRYAEDAVYNHVVKFLQPAFTKENSKKANAPFTS ALTQKEIRAILNRSMRGSERYRVMKASGATDAEIQKAFRTPVDMSIFTFHGDVDTTMTPM DSIRYYKSFLRAGFMSMEPQTGHVKAYVGGLDYNHFMYDMVMSGRRQVGSTIKPFLYSLA MENGFSPCDQAPNVQRTYIVAGKPWTPRNASRRRYGQMVTLKWGLANSNNWISAYLMSRL NPQQFVGMLNDFGIKNPDIHPSMALCLGPCEVSVAEMVSAYSAFANHGIRTAPMFVSKIE DNEGNVIATFQPRMNEVISEESANKMLVLLQAVVEGGTAGRLRFKYHIDGEIGAKTGTTN RNSDAWFMGFTPQLVSGCWVGGEDRDIHFDSMRMGQGATMALPIWAYYMKRIYRDKSLGY RADASFGLPEGYNPCHQDDANMDEFGIDEVFE >gi|281306462|gb|ADEF01000004.1| GENE 84 97868 - 98431 626 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150005281|ref|YP_001300025.1| 30S ribosomal protein S16 [Bacteroides vulgatus ATCC 8482] # 1 187 1 183 183 245 67 9e-64 MATKIRLQRRGRKGYAFYSIIIADARAPRDGKFTEKIGTYNPNTNPAAVDLNFDRALYWL EVGAQPTDTVRNILKREGVYLMKHLRGGVKKGAFDEAAMQSKFDAWKQEKVKGLQACAAN EAQAKKDAIAKELEEEKKINAEIAKKVAEKKAAAKAEEEAAKAAKEGTQETSEEAPATET EETPAEA >gi|281306462|gb|ADEF01000004.1| GENE 85 98598 - 99641 1077 347 aa, chain - ## HITS:1 COG:BS_galE KEGG:ns NR:ns ## COG: BS_galE COG1087 # Protein_GI_number: 16080937 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose 4-epimerase # Organism: Bacillus subtilis # 7 338 3 328 339 327 50.0 3e-89 METKQTILVTGGTGFIGSHTTVELQQAGYNVVIVDNLSNSKIEVLDGIEKITGIRPHFEQ IDLCNFEDTEAVFKKYNDIAGIIHFAASKAVGESVEKPLLYYRNNITSLLNLLELMPKYH VKGIIFSSSCTVYGQPTAENLPVTEEAPIQKALSPYGNTKQINEEIIQDYIHSGAKLKSI ILRYFNPIGAHPSANIGELPNGVPNNLIPYVTQTAMGIRKELTIFGNDYDTPDGTCIRDY IYVVDLAKAHVAAMKRVLEKETSPLEIFNIGTGHGESTLEIVKGFEKATGVKLNWKYGPR REGDIEKVWGNVDKANKVLEWKADTPIEEVLASAWKWQERLRDEGVM >gi|281306462|gb|ADEF01000004.1| GENE 86 100107 - 100229 62 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MADNYLERKQREYEEHKAAWLKKKKLHLQKPKQLVRKENQ >gi|281306462|gb|ADEF01000004.1| GENE 87 100230 - 101645 1129 471 aa, chain - ## HITS:1 COG:no KEGG:PRU_0993 NR:ns ## KEGG: PRU_0993 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 18 471 18 485 486 340 42.0 7e-92 MKNQFIAIIAFAAFLLASCDDTTDTLGGSLTNKMDKLEISADTFMVSTRSIAADSVLSRT TIGYLGKIKDTETGGYITGNYMTQFRIPENYAFPSAQQMTHKINDIIVADSCEIRLYYAT FYGDSLAPMKVTAYAMSKPMNEDRKYYSNFDPIKQGYVSPNAYQVDKIYTLTDAKAQAGK SNNGNSSKYITIKLNQPYTAPDGKEYNNFGTYVLQQYYKHPAYFKNSFSFAQHVVPGFYL KNASGLGSMVYINLSQLNIYFTFKHNNKEQIGSASFSGTEEVLQTSNISNDAHTIQSLVN NHEHTYLKSPAGIFTELTIPVDEILKGHEKDSLNAAKIHLARLNNLVNSKYALDIPQTLL LVQKDSLYSFFENKRIADYKTSFLATYNAANNGYTFHNIGSVIKEMKKNKMAGTRSKDWN KLVVIPVQATYYSYNQNKILTRVVHDMSLTSTRLLGGNQPLSLSVIYSHFQ >gi|281306462|gb|ADEF01000004.1| GENE 88 101722 - 102492 761 256 aa, chain - ## HITS:1 COG:TM0895 KEGG:ns NR:ns ## COG: TM0895 COG0297 # Protein_GI_number: 15643657 # Func_class: G Carbohydrate transport and metabolism # Function: Glycogen synthase # Organism: Thermotoga maritima # 2 162 12 168 486 77 26.0 2e-14 MPYVPETEMSKMGRELPQTMQESGYEIRTFMPKWGNINERRGQLHEVIRLSGMNLIIDET DHPLLIKVASIPQVRIQVYFIDNEDYFTKRQMTVDESGDEYPDNGERAIFFARGVLETVK KLRWVPDIIHCQGWMGAVVPFYVKTAFKDEPSFANAKVITALFQNQLKKDLGTNFKRCVE YRDAKVDLLDAYHEKFDFFELGKLAIDYSDGIIETGNDVNKDLIQYAKSKDIPFLDDPGK EYAKAYQDFYDLILEK >gi|281306462|gb|ADEF01000004.1| GENE 89 102527 - 102667 69 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSSLAFTYLLSELRMKDFVVRYYRLHAMLHAKIQKINENKVGLFSN >gi|281306462|gb|ADEF01000004.1| GENE 90 102798 - 103223 560 141 aa, chain - ## HITS:1 COG:PAB1771 KEGG:ns NR:ns ## COG: PAB1771 COG0511 # Protein_GI_number: 14521093 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Pyrococcus abyssi # 5 138 4 142 145 68 35.0 3e-12 MKTFKYIIDGKEYQVEITDVIDNKAQVTVNGKDFQVEMEAQPEAEKKAVTQLPQSDEKVE TEPSTNGQVNTEQAIKAPLPGVITEIKVSVGDQVKAGDTVVVLEAMKMANNIEAEKDGTV TAICIKQGESVMEDTPLVVIE >gi|281306462|gb|ADEF01000004.1| GENE 91 103276 - 103425 170 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879603|ref|ZP_06288334.1| ## NR: gi|282879603|ref|ZP_06288334.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 49 1 49 49 100 100.0 4e-20 MDKNIYAAIAMALFEYQGNNVHDIEPGKITILPKHTLWNAKFLSFTERP >gi|281306462|gb|ADEF01000004.1| GENE 92 103450 - 105015 1488 521 aa, chain - ## HITS:1 COG:RC0960 KEGG:ns NR:ns ## COG: RC0960 COG4799 # Protein_GI_number: 15892883 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) # Organism: Rickettsia conorii # 11 521 12 514 514 613 58.0 1e-175 MSKQVEKIKTLVEKREQARLGGGLKAIEKQHARGKYTARERIDMLVDEGSFEEYDMFKLH QCHNFGMEKKQILGDGVVTGSATIDGRLVYVYAQDFTVNGGSLSLTMAQKICKIMDLAMQ NGAPIICMNDSGGARIQEGICALAGYGEIFERNILASGVVPQISAILGPCAGGAVYSPAL TDFIFMSEGTSYMFLTGPKVVKTVTGEDIDAEHLGGASVHATKSGVTHFAAKNDTEVLAL IKTLLSYLPSNNTEEAPRLQNEDPINRTSDLLNEILPDDPNQAYNMYKVIGEITDNGEFF EVQPKFAKNLITGFARFNGQSVGIVANQPQAYAGVLDTNASRKGARFVRFCDAFNIPIVS LVDVPGFLPGTGQEYNAVILHGAQLLYAYGEATVPKITITLRKSYGGSHIVMGCKQLRSD LNFAWPTAEIAVMGASGAVAVLSAKEAKMKKEAGEDVRAFLAEKEEEYTNLFANPYQAAQ YGYIDDVIEPRNTRFRICRGLAQLAHKRQQLPAKKHGCMPM >gi|281306462|gb|ADEF01000004.1| GENE 93 105404 - 105673 439 89 aa, chain + ## HITS:1 COG:RP627 KEGG:ns NR:ns ## COG: RP627 COG0234 # Protein_GI_number: 15604474 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Rickettsia prowazekii # 1 88 1 94 95 88 55.0 3e-18 MNIKPLADRVLVLPAPAEEKVGGIIIPDTAKEKPLHGKIVAVGNGTKDEEMILKEGDEVL YGKYSGTELEYEGEKYLMMRQSDVLAIVK >gi|281306462|gb|ADEF01000004.1| GENE 94 105742 - 107367 1672 541 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 541 3 547 547 648 60 0.0 MAKDIKFDVEARDLLKQGVDQLANAVKITLGPKGRNVVIEKKFGAPQITKDGVTVAKEIE LEDSFENTGAQLVKSVASKTGDDAGDGTTTATILTQAIVSEGLKNVTAGANPMDLKRGID KAVNAVVDYIKSNAEQVGDNYDKIEQVATVSANNDPEIGKLLADAMRKVSKNGVITIEES KSRDTNIGVVEGMQFDRGYLSSYFVTDTDKMESVMENPYILIYDKKISNIKDFLPILQPA AESGRPLLVIAEDVDSEALTTLVVNRLRAALKICAVKAPGFGDRRKAMLEDIAILTGGVV ISEEKGLKLEQATLEMLGSADKVTVTKDNTTIVNGAGQSENIQARISQIKNEIEHTTSSY DKEKLQERLAKLSGGVAVLYVGANSEVEMKEKKDRVDDALCATRAAIEEGVVVGGGTTYI RALDALKDLKGVNSDEQTGIKIVERAIEEPLRQIVANAGGEGAVVVDKVREGKGDYGYNA RTETYEDLRQAGIVDPAKVARVALENAASIAGMFLTTECLIVDKPEEKPAMPAAPGMGGM M >gi|281306462|gb|ADEF01000004.1| GENE 95 107785 - 109326 1348 513 aa, chain + ## HITS:1 COG:RSc0403 KEGG:ns NR:ns ## COG: RSc0403 COG1660 # Protein_GI_number: 17545122 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Ralstonia solanacearum # 385 507 180 295 296 77 37.0 4e-14 MEKLIELYTQWAHENPIKIDPIEGAGSNRSYYRFTNSKGETTIGVIGTSRDENHAFIYLT NHFSKQLLPVPKILAVGDDQLRYLQTDLGTTSLFDLLKDAREAGGRYTQKEKKLLLRTLE ALPAMQIQGARGLDFKHCYPQPTFDADSVLFDLNYFKYCFLKATGIDFHELKLEANFRLF AKDLTAEPSEYFLYRDFQARNVMIDEQGNPHFIDYQGGRKGPFYYDLASFLWQASAKYPF KLRRDLVFAYYNSLKRYIEVPSSRHFVERLSLFVLFRTLQVLGAYGFRGYFERKKHFLSS IPPAIQNLRELLKLNGVVSNYPYMMDILKQLTELPQFAIVEQPKTKRTDGYKIAQHNIYH ANPVDGPATFSKYDGGGVLVVRVYSFSFHKGIPEDSSGNGGGYVFDCRSTHNPGRYEPYK CLTGLDEPVIRFLESDGEILTFLDHIYKLADRHVSRYIERGFTSLMFSFGCTGGQHRSVY AAQHLAEHIHDKFGIEVRIIHREQNINQTLPAK >gi|281306462|gb|ADEF01000004.1| GENE 96 109410 - 110177 512 255 aa, chain + ## HITS:1 COG:AGc42 KEGG:ns NR:ns ## COG: AGc42 COG1208 # Protein_GI_number: 15887384 # Func_class: M Cell wall/membrane/envelope biogenesis; J Translation, ribosomal structure and biogenesis # Function: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 111 6 114 248 106 45.0 4e-23 MKQAMIFAAGLGTRLRPLTDHMPKALVQVGGVPLLQLVIERLKEAGFERIIVNVHHFSQQ IIDFLHAHDNFDIDILISEERETLLNTGGGIKHAQKLFTQERILIHNVDILSNVDLSHFY TSNQEAAATLLVSERKTKRYLLFDETLKLVGWTNIETGEVRSPFSDINPAHCKMFAFAGI HNFSPTLFPLMQDYPSSFSIIDFYLDICKRIPIKAYIDTNLQLLDVGKPETLSQAAAFMS RWDTPTTSSQSHSTS >gi|281306462|gb|ADEF01000004.1| GENE 97 110226 - 111770 1248 514 aa, chain + ## HITS:1 COG:FN1444_2 KEGG:ns NR:ns ## COG: FN1444_2 COG0519 # Protein_GI_number: 19704776 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Fusobacterium nucleatum # 194 514 2 318 318 412 61.0 1e-115 MQQKIIILDFGSQTTQLIGRRVRELDTFCEILPYNKFPKNDDSIIGVILSGSPYSVHDRE AFQCNLSDFMGKYPVLGICYGAQFISHTHGGKVERTETREYGRALLKDFDAENPLFKGFE PHSQVWMSHGDTITAIPSDCHVIASTADVHYAAYASDTYPLWAVQFHPEVFHTTQGTTLL KNFVVDICGSKQQWSPASFVETTVKELKQQLGNDRVILGLSGGVDSSVCATLLNKAIGKN LTCIFVDHGMLRKDEFKRVMKAYEGLGLNVIGVDASKKFFQDLKGVTDPEEKRKIIGRDF VEVFNAEAKKITDAKWLAQGTIYPDRIESLSITGMVIKSHHNVGGLPKEMKLKLCEPLQW LFKDEVRRVGQQLEMPEHLIKRHPFPGPGLAVRILGDITPEKVAILQAADDIYIEALHQW ICEDGQPLYDKVWQAGTVLLSTIRSVGVMGDERTYEHPVALRAVTSTDAMTADWAHLPYE FLAKVSNEIINKVKGVNRVCYDISSKPPSTIEWE >gi|281306462|gb|ADEF01000004.1| GENE 98 112606 - 113409 543 267 aa, chain + ## HITS:1 COG:mlr2757 KEGG:ns NR:ns ## COG: mlr2757 COG3177 # Protein_GI_number: 13472455 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Mesorhizobium loti # 36 257 41 241 263 83 29.0 4e-16 MNKQDFLNILEEHRRLSFQDQIDYEKFYLYSIITHSTAIEGSTMTEVENQLLFDEGLTAK GKSIIEQNMNLDLKAAYERSMDMAREHTPFSIDMLNELSSIVMRRTGGVVNAPGGVFDSS KGDLRRVNVTAGAMGKSYMSYLKVPQKLDDFCKEMNERRTNLIKEPDVYEQYRLSFDAHL KLVTIHPWVDGNGRMSRLMMNHLQTEFGLVPSKVLVEDKAEYIEALVKSREEDSCLPFQN FMFKEHAKNLQQEIDNYKLSLGEEEEK >gi|281306462|gb|ADEF01000004.1| GENE 99 113667 - 114623 685 318 aa, chain + ## HITS:1 COG:SA1666 KEGG:ns NR:ns ## COG: SA1666 COG2197 # Protein_GI_number: 15927422 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 169 311 43 207 207 60 32.0 6e-09 MKVHKMYEPEDKLISIIGDNYSVLQSLGSFGINLGFGDKTVREVCESQNVDTYTFLAIVN LTINGYKEDEDSNELNIPTLIQYLRASHSYYLDFQLPFIRKELAGALDETNNLARLILKL YDEYAHSIRNHMRYEEKNVFPYVDDLLNGKIDETYDIETYSKHHGQTDLKLKELKNIIIK YLPSNGLMNNQLTATLYDIYNCEQWLTLHSMVEDEIFIPAIRHIEKKLRQSDVSIKISSM LSQVPHSQEILSEREKEVIVSLVQGMTNKEIADHLFISINTVITHRRNIARKLQIHSPSG LTIYAIVNNLIDIRNVKL >gi|281306462|gb|ADEF01000004.1| GENE 100 114670 - 119019 2207 1449 aa, chain - ## HITS:1 COG:no KEGG:PRU_1251 NR:ns ## KEGG: PRU_1251 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 1427 35 1469 1480 1031 40.0 0 MGQQAGNYLSKRFGTQVRVERVYLGFLNRLVIDGLFMDDQKGVPMLQASRLSIKLDVFSL MRGGINISSAQLFGIKANLYQANKHAQTNFQFLIDSLASKDTTSQSTPINLNSMIIRRGS IRYQVLDQPKENHFSFNDLALTEISSHIVFNHFSNDSLNVKLKNLSFKEKSGLHIKSLTA KLIANSSSCFLENFNLSLPHSMLHVDEVRTNYHQKNHHIDLSTLSYKGKIKNSKLTLADF SFLDAQFSKYTTPFDIKTSFHGNRNSLTLSNLQLQADKMFKATANATLQGLDKSLKWMLE LKELEATNKMLTAFFPKIAQQSPFQHFTNLKLKGMARGAQQNFNIDGQLASNLGEVKFRL HKERNNYNGALETIELSLDKLLERKDLGKITSTLELKDFQRYSTHSKFLLKGDISKIDYK GYTYHHIYIDGNGLLNPKNELTSFEGVANLNDPNGELHIKGKVNRHQTIYQVQLDAQAKD LHLAALNISKKFPYRRVSFEAGANVSGKSLKDATGQLSLNHLRIVNQRSQYQLNHLDLKT GFDEKHEHFISLNGDFGSAMIVGTFDYDALSQNVANILIEKLPSLQHLTPIRQRHTAPTN ARLYADIRNTDWAPYFLDIPFVLHQPLQISGTMESSQNLMNVHITAPDFTYQGKKYYQCY AHLQTRQDILCLDAELNRLNKQNKKWSWSVKSAAANNHLLTKLSFDNHEAHPFRGTVNTE TQFFKNNKGDAAAHISIHPSEILVEDSIWRIEPSDIIYSKNHLNVDYFSIHHDDQHVIVS GLATRNPNDSLLIDLKDIDVSYVLNLLNFHAVEFGGLLSGKVVASGLFGNPRGHADVLVN QFKFETGRMGALDAHVAWNEKAKQIDINAVANDEHRKTVISGYVSPERDYLDLDILANNT RLEFLEGFCDSFMQQVDANGRGRLRLFGNLGSLNLTGQVVADGTLGITPIHTTYTLKNDT IRLVPNEIIFNHNIIYDRQQHTGILNGVLKHDHLSDIQCDLHVKADHLLAYDTHDFGEEN FYGTAYLTGDCNIKTKSGELTIDVDATPQKGSQFVYNVAGYGHLDTQRFIKWTSQADSIK NGTTNELEPLQQTTQFLREIPSDIRLNFLINCTPNMEIKLIMDNQTGDYISLRGNGVLRT HYYNKGTFDIYGNYVVDHGIYRLTVQNIIKKDFQFRQGGTIAFGGNPYLATLDLNAIYTV NGVSLADLNIGKSFTRNNTRVNCLMNITGTPDTPQIDFNLDLPTINNDAKQMVYSLMNSE EEMKQQVLYLLAVGRFYSQETKNAAMNNPTQPSQATLAMQSILSGTLSQQINTVLNSVID NTNWNFGANISPGTEGFNNAEYEGSLSGRLLDNRLNINGQFGYRDNPNATTTFIGDFDIK YLLYPNGNLAVKIYNQTNDRYFTRNSLTTQGVGLIIKKDFTNLRDLFGRRRQKKVKTKTP NNSPQPKTK >gi|281306462|gb|ADEF01000004.1| GENE 101 119293 - 120663 1112 456 aa, chain + ## HITS:1 COG:YPO3240 KEGG:ns NR:ns ## COG: YPO3240 COG1726 # Protein_GI_number: 16123399 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA # Organism: Yersinia pestis # 4 454 1 446 447 271 34.0 2e-72 MVNVIKLRKGLDINLKGRAKEEKTSLKLSHEYALVPDDFVGVTPKVIVHIGDEVKAGEAL FVNKNFPEVKFSSPVSGKVKSIVRGERRKVMAVVVETSQQEEFVDYGKKDVTQLSSEQVI ESLLEAGIFGYINQLPYAVSTNPKECPRAIFVSGFRNMPLAGKFEFELKGNEEAFQTGLT ALSKIAKTYLNIHANQKATALTQAKDVEVNVFDGPCPSGNVGVQINHIAPVNKGEVVWTV EPTAVIFIGRLFLTGKVQLTRTVAVAGSEVNEPKYVDALVGTPISDLLAGQVTKKINPED GECLRIINGNPLTGRQCHLNDFLGAHTSEVCVIPEGNQADELFGWILPRTNHFSASHSYF SWLLGKDKKYDVDARIKGGKRHMIMSGEYDKVLPMDIFGEYLIKALIAGNIDKQEQLGIY EVSPEDFAVAEFVDSSKLELQKIVRKGLDTLRKENA >gi|281306462|gb|ADEF01000004.1| GENE 102 120668 - 121831 834 387 aa, chain + ## HITS:1 COG:PA2998 KEGG:ns NR:ns ## COG: PA2998 COG1805 # Protein_GI_number: 15598194 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB # Organism: Pseudomonas aeruginosa # 1 381 1 401 403 310 42.0 3e-84 MSLKKYLNKIKPHFEEGGKLHAFWSIYDGFESFLYVPNTTAKTGAHIHDAIDSKRIMSLV VIALMPALLFGMYNIGYQNYSAAGQLANASFWEMFCFGFLALLPKILVSYIVGLGIEFAW AQWKKEEIQEGYLVTGMLMPLIIPISCPLWMLALSIAFAVILCKEIFGGTGMNIFNIALS ARAFLFFSYPSVMTGDTVWVANHSIFGLGNTLPDATTMATPLGELAQHTDIPYTINEMMI GLIPGSVGETSVIAIALGAILLLLTGIASWKTMFSVFAGGGIMAVLFQSLGMTPIEWYEH LILGGFCFGAVFMATDPVTSARTETGKYIYGALIGVMTVIIRVMNPGYPEGMMLSILFAN MFAPLIDYCVVQHNINNRMKRLTADNK >gi|281306462|gb|ADEF01000004.1| GENE 103 121836 - 122558 722 240 aa, chain + ## HITS:1 COG:CPn0428 KEGG:ns NR:ns ## COG: CPn0428 COG2869 # Protein_GI_number: 15618343 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC # Organism: Chlamydophila pneumoniae CWL029 # 5 237 6 306 320 90 27.0 2e-18 MAEENKKGLNTNSNSYTIIYSIIIVILVAFLLAFVFQALKPMQDANVALDKKKQILNSLN IRDLNNEEAAAKYQEVVLADEIIDEQGNVLEKGEQGGENYGFKLNSADFKNGKLALFVCK VDGQTKYVIPVYGMGLWGAINGYIAINADKSTVFGTYFDHESETAGLGAEIKDNRAWQNQ FQGKKLFAQDPNKIALAVSKKVEDPATQVDGITGATLTSNGVTEMLQTCLGAYMNFLKAH >gi|281306462|gb|ADEF01000004.1| GENE 104 122573 - 123199 576 208 aa, chain + ## HITS:1 COG:PA2996 KEGG:ns NR:ns ## COG: PA2996 COG1347 # Protein_GI_number: 15598192 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD # Organism: Pseudomonas aeruginosa # 9 202 9 202 224 196 54.0 2e-50 MSLFSTQNKKVFTNPLNLDHPILVQVLGICSALAVTSQLKPAIVMGLAVTVITAFSNVII SIIRNTIPMRIRIIVQLVVVAALVTIVSQILKAYAYDVSVQLSVYVALIITNCILMGRLE AFAMMNKPWPSFLDGVGNGLGYAMILVVVGAFRELFGRGTLLGFTIIPSSFYDFGYMNNG MMAMPAMALILVGCVIWIHRAYFYKEEQ >gi|281306462|gb|ADEF01000004.1| GENE 105 123230 - 123838 570 202 aa, chain + ## HITS:1 COG:HI0170 KEGG:ns NR:ns ## COG: HI0170 COG2209 # Protein_GI_number: 16272135 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrE # Organism: Haemophilus influenzae # 1 202 1 198 198 185 53.0 4e-47 MEHIISLFFRSIFVDNMIFAFFLGMCSFLAVSKNVKTSFGLGMAVTFVLFVTVPVDYLLQ TKILDPLGLSYLSFIIFIAVIAGITQLVEMLVEKYSPSLYSSLGIFLPLIAVNCAIMGGS MFMQQRINLDPSNTQYIGNIFDAIAYAVGSGLGWTLAIVLMGAIREKLEYSDVPKPLQGL GITFITVGLMAIAMMCFSGLKI >gi|281306462|gb|ADEF01000004.1| GENE 106 123845 - 125116 1201 423 aa, chain + ## HITS:1 COG:PA2994 KEGG:ns NR:ns ## COG: PA2994 COG2871 # Protein_GI_number: 15598190 # Func_class: C Energy production and conversion # Function: Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF # Organism: Pseudomonas aeruginosa # 6 423 6 406 407 413 48.0 1e-115 MNFSFILTSIVVFLSVILLLVIILLVAKKYLSPSGNVNIIINEDKTLSVPQGASIMSTLT QNGIYLPSACGGKGSCGQCKLQVIEGGGEILDSERPHFSRKEIKNNWRLGCQCKVKGDLK IKIPETVLGVKEWECTVISNKNVSSFIKEFKVQLPPGEHMDFIPGSYAQISIPAFDVIDY DKDFDKNDIGEEYIGAWKKFNILSLKAHNPEPTVRAYSMANYPEEGDIIMLTVRIASTPF KPRPQVGFQNVPTGIASSYIFSLKPGDKVKMSGPYGDFHPIFDSKKEMIWVGGGAGMAPL RSQIMYMLKTLHTRDREMHYFYGARSLNEAFFLDDFHELEKEYPNFHFHLALDRPDPVAD EAGVKYTAGFVHQVMYDTYLKDHEAPEDIEYYMCGPGPMSAAVQKMLDSIGVDPESIMFD NFG >gi|281306462|gb|ADEF01000004.1| GENE 107 125553 - 127004 1364 483 aa, chain - ## HITS:1 COG:no KEGG:GAU_3173 NR:ns ## KEGG: GAU_3173 # Name: not_defined # Def: hypothetical protein # Organism: G.aurantiaca # Pathway: not_defined # 20 474 29 487 489 303 39.0 1e-80 MNKFITHSTGLALTFILASCSLIEPTNVENPNVGEDTYLASDRAMDIWVNGAEKTFATTI AKFCLHTEIISDNYFNNYTRESKVFDKPELKNTDPDIAELQRLVANLRESADYGINTVSQ HDQHTTEEHLFKLYTMKAYAFLLTGENFRALPTTVGGNPLPANEQLLLAKNALDKALTYA TNNHEKALVHTLKARVYYVMGQAQNAIDESKLALQNSNDFIEQVTFDGKNNVTNSMQDVI WKTMYQPLPRLDFLDPKYFQLKATDECPISIAKAEENYLILAEAYLSQGQSQQAKKELNQ LLQLVAKRPVQQQLNDQLEGRFNGGFKHYPDAADYRVAASPKDPYRSGLVLNRKSPHLIQ VPTVSGTSVTAEMIDECKDNDALLELIYLMRQEIFLAEGRRMSDLGIRLPISDVEIAHTP AAKTYAEPLIPKFIPLEQGMDNFDIDTEKRLVTIHYNMNHLIVINKNRPEVAPLFTTSSS KGK >gi|281306462|gb|ADEF01000004.1| GENE 108 127008 - 129812 2192 934 aa, chain - ## HITS:1 COG:BMEI0657 KEGG:ns NR:ns ## COG: BMEI0657 COG4206 # Protein_GI_number: 17986940 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Brucella melitensis # 50 223 10 149 599 61 28.0 9e-09 MKKLALWHSACLVACTLFAKTADASSIMPKGINPLAGVTKIENKDKNLLDSINLNEVVVT GQGNAIRRRRLSSSVTKISASELQKTPATRIDQMLQNALPNVQLSLTNGQPGTTSIIKSR GLSSAFANSTPIIYIDGVRIDNLNTGSILNYSKHGYGANPYTIGDMPMGEMASSSTLSDI SIENIDHIEYVPGGAATTLYGSDAANGVIQIFTKKGTEAGFRATVTAEMGCDVPTTQFYH FRRTRELLNQTGFQQRYRLSLSGGNQTFGYSLGASMGGNTGIIIHNNNEQKRYDIRFGSH ARLHRTLEYQNSFGFVAEDYRRSRNGNQGFYTGLWFTEGAAAANMKYQAADGTQHNFNAD IDAVDDYQFAQMKAFVDKAEALQNYKETVKRFQTSQVLIYKPMSNLTLKGTFGLDYRANG NKEIVTNQYLVHTQVKPIGTTDAGRINNFDRTYFGLTADVNAQHKAYFEHGISNIVTAGF QYFNNHDHQAIYNGSNVRDGAKVMSGAGTQQADEWMSYLHSYGFYLQDNVGLLNRYYLDL GARIDYNIAFGENVRWQFYPKIGLSYVMTDEPFMRSLVSRRILTTLRWFCNYGVAGSYPP PFAYQKTVDISSFQGKLAATFGQYGNANLGPEKKHSFEIGFEGSLFNDLCSVGFTYYHAR TLDALFSIPTLPSSGQAANYLANIGDILNHGVEINTLITPIRTKDWRVSLRTSFNTNHNK VLSTGGAIPFAIGGFGPSTIQTVVEEGKSVGFLRGNKAILNEDGTLKEVQHMQDLGRTVP IFYGNMMLNVNYRSWQFTMSGDYQAGSYVHSFDRQFRFSKGLKDDAIPQAALMGKPQKKS WLNFTNYFVEKADFLKIRNIALSYEHTFTSGKTPVKAVNIGLNVYNPLSLTAASVDPEAT IAGARSQGAVATGGLNYSTYSMPRQYIISIQLNL >gi|281306462|gb|ADEF01000004.1| GENE 109 130235 - 130603 311 122 aa, chain - ## HITS:1 COG:XF0449 KEGG:ns NR:ns ## COG: XF0449 COG3169 # Protein_GI_number: 15837051 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 4 120 9 114 116 94 50.0 4e-20 MTGIYTILLLICSNIFMTLAWYGHLKLQQTGVSSNWPLFAVVIFSWCVAFLEYCCQVPAN RIGFADNGGPFSLVQLKVIQEVVSLTVFGVFSTIFFQNESLHWNHIAAFGCLLCAVYLMF MK >gi|281306462|gb|ADEF01000004.1| GENE 110 130600 - 132951 2340 783 aa, chain - ## HITS:1 COG:MA3787 KEGG:ns NR:ns ## COG: MA3787 COG0493 # Protein_GI_number: 20092583 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Methanosarcina acetivorans str.C2A # 327 781 16 468 469 445 54.0 1e-124 MNKIIRKKQFSEKVFLFEIEAPLIAKSRRAGNFVIVRTGKRGERMPLTIADADPKRGTIT LVVQKVGKSSYKLCELNEGDYVTDVVGPLGNATHIETFGTVLCAGGGVGVAPMLPIIKAL KKAGNRVLSVLAGRSKDLIIMEDEVRANSDEVIIMTDDGSYGEKGVVTVGMEKFIEQEHV DKAFAIGPPIMMKFCCLLTQKYNIPTDVSLNTIMVDGTGMCGACRLTIGGKTKFVCIDGP EFDGALVDWDEMFKRMGTFKDVERLDLERLQAHKEAVEQKQVKPKPNIKMDVEPTDDKLD VLTDRNAEWRKELRASMKPKERTAISRVQMPELDPVYRATTLREEVNRGLTKEMAMTEAK RCLDCAKPTCVEGCPVSINIPSFIKNIERGQFLAAAKVLKSTSALPAVCGRVCPQEKQCE SRCIHLKMKEPAVAIGHLERFAADYERESGMSSLPDLQPANGIKVAVIGSGPAGLSFAGD MAKYGYEVHVFEALHEIGGVLKYGIPEFRLPNDIVDVEIENLRKMGVHFETDCIVGKTIT IQDLEDANFKGIFVGSGAGLPNFMGIPGENAINILSSNEYLTRVNLMDASNPTSDTPINL GKHVMVVGGGNTAMDSCRTAKRLGADVTLVYRRSEAEMPARLEEVKHAKEEGIHFMCLHN PIEYLTDEKGAVKSAVLQVMQLGEPDASGRRRPEPIEGETITLDVDQVVVAIGVSPNPLV PRSIEGLELGRKNTIVVNENMQSNKPEVYAGGDIVRGGATVILAMGDGRRAASSMDEQLK KSK >gi|281306462|gb|ADEF01000004.1| GENE 111 133044 - 133667 608 207 aa, chain - ## HITS:1 COG:no KEGG:PRU_1474 NR:ns ## KEGG: PRU_1474 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 12 174 1 150 171 77 25.0 2e-13 MKCKYIYTFLFLFLSIHSVAQHKVGAMTFKPYVGYSFASMFNGDLDFRKSVMAGVDIEKR YFKHLSVSGGVNYAPMGGIYNSSGKDMFVWKHDYIAFPITANWYIFKGFALKTGIQPAIS IRSRQESIDDPTMIDRNMEGQLNTFDLTIPVAISYELYNFVLDIRWNIGVTDTGSAEAWK HDYHMVNSKLQGTNFSYVFSIGYQFDW >gi|281306462|gb|ADEF01000004.1| GENE 112 133682 - 134971 1279 429 aa, chain - ## HITS:1 COG:SP0411 KEGG:ns NR:ns ## COG: SP0411 COG0172 # Protein_GI_number: 15900330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 1 420 1 417 424 329 43.0 8e-90 MLTLKLISEETERVVKGLEKKHFENAKETIAQALDIDKKRRESQQKLDKNKQEANQLSKK IGGLMKDKKMDEANEIKAQVADLKKEAKSLQDAMETAEHELTELLCTIPNIPNADVPEGK DASDNVVVKEGGVIPDLPDDALCHWDLCKKYNLIDFDLGVKITGAGFPIYIGKMARFQRA LEAFFLEEARKAGYLEVQPPFVVNQASGYGTGQLPDKEGQMYHVQLDDLYLIPTAEVPVT NIFRDVILDEKDLPIKRCAYSACFRREAGSYGKDVRGLNRLHQFDKVELVRIDRPEHSYQ SLQEMLNHVEGLCQKLELPYHILKLCGGDMSFTSSICYDFEVWSAAQKRWLEVSSVSNFE TYQANRLKCRYRHTDDGKIELCHTLNGSALALPRIVASILENNQTPNGIRVPKALVPYCG FEMIDDQNF >gi|281306462|gb|ADEF01000004.1| GENE 113 135214 - 135504 330 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|110636876|ref|YP_677083.1| 50S ribosomal protein L27 [Cytophaga hutchinsonii ATCC 33406] # 1 82 1 82 89 131 74 2e-29 MAHKKGVGSSKNGRDSESKRLGVKIWGGQSVIAGNIIVRQRGSKHNPGQNVGMGKDDTLY ALSDGIVYFQKGRKDKSTVSVLSEEAYAEKMKKAEA >gi|281306462|gb|ADEF01000004.1| GENE 114 135525 - 135842 424 105 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150006123|ref|YP_001300867.1| 50S ribosomal protein L21 [Bacteroides vulgatus ATCC 8482] # 1 105 1 105 105 167 77 2e-40 MYAIVEINGQQFKAEQGKKLFVHHMKDVEAGKTVEFDKVLLVDNEGAISVGAPTVEGAKV VVEVVNPLVKGDKVIVFKMKRRKDYRKKNGHREQFTEVEVKQVIA >gi|281306462|gb|ADEF01000004.1| GENE 115 135953 - 136111 125 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879627|ref|ZP_06288358.1| ## NR: gi|282879627|ref|ZP_06288358.1| hypothetical protein HMPREF9019_0793 [Prevotella timonensis CRIS 5C-B1] # 1 52 1 52 52 74 100.0 2e-12 MVLFIQKERAFLRDINERIPLLMQFLTKLSVTNLKNTITGFNKIALIVLRFQ >gi|281306462|gb|ADEF01000004.1| GENE 116 136089 - 136928 646 279 aa, chain - ## HITS:1 COG:NMA1092 KEGG:ns NR:ns ## COG: NMA1092 COG1947 # Protein_GI_number: 15794040 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Neisseria meningitidis Z2491 # 4 278 10 274 281 131 33.0 1e-30 MVVFPCAKINLGLQVVGVRENGYHDIETVFYPIPLHDALEITPMDDEFPSDTRCDIKITG NFIPGKDTDNLVVKAYKLLANDFDLPNIHIHLFKQIPTQAGLGGGSSDAAYMLKLLNEQF SLNLTVDKLKDYAARLGADCAFFIKSEPCFASGIGDVLEPISNSSYLLKGYKLALIKPDI AISTQRAYQQIKVKKPSVSCKDIIHKPIKCWKDELFNDFETPVFQEFPELKAIKEQLYQQ GAIYASMSGSGSAIYGIFEDEPSHIHKLFDSYFTEILTL >gi|281306462|gb|ADEF01000004.1| GENE 117 136976 - 139294 2015 772 aa, chain - ## HITS:1 COG:STM2472_1 KEGG:ns NR:ns ## COG: STM2472_1 COG0281 # Protein_GI_number: 16765792 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Salmonella typhimurium LT2 # 6 433 6 434 434 510 60.0 1e-144 MVKITKEAALAYHEGERPGKIEVKPTKPYRTQTDLSLAYSPGVAYPCLEIQSNPNDAYRY TDKGNLVAVISNGTAVLGLGDIGAISGKPVMEGKGLLFKIYGGIDVFDIELDEKDPEKFC ETVERIAPTFGGINLEDIKAPECFYIEQRLKKTLDIPVMHDDQHGTAIISAAGLKNALEV AGKDVKTAKLVINGAGAAAISCTNLYMALGIQKENIVMLDSHGVITVDREDLNPQKAAFA TNRTDIHTLQEAIKGADVFVGLSKGKVLTKDMIRSMADRPIVFALANPIPEISYEEAIES RPDVIMSTGRSDYPNQINNVIGFPYIFRGALDVHAKAINEEMKMAAVQAIADLAKQPIPD VVNEVYHINDLVFGPAYFIPKPIDPRLITEVSVAVAKAAVKSGVARTPIEDWGAYRESLK QLLGQESKFTRKLHATAVRHPQRVVFAEGEHPTMMKAAFQAMQEGICHPILLGNPDRVSR LANRLKIDLKGVEIVDMRADQEQGRRAAFAKHLAEKCERQGYTFDEAYDKMYERNYFGMS MVEHGDADAFITGLYTKYSNTIKVAKEVIGIRPGYDTFGTMHILDTQKGIFYIADTLINR HPNEKVLYDIARLSAHSVKFFNDDPVMAMISYSNFGSDTTGSPHEVHAAVQKLQADYPDL VVDGEMQVNFAMNRKLRDDKFPFTRLKGKEVNTLVFPNISSANGSYKLLQALDTDTEIIG PIQMGLKKPIHFTDFECSVRDIVNITAVAVIDAYVEKVKKGVEDSYQTMSKK >gi|281306462|gb|ADEF01000004.1| GENE 118 139546 - 140166 453 206 aa, chain + ## HITS:1 COG:no KEGG:PRU_1212 NR:ns ## KEGG: PRU_1212 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: P.ruminicola # Pathway: not_defined # 1 205 1 204 207 128 33.0 1e-28 MRKNNSQNSYRQELRERILATAMNEFYTKGIKAVKMDDIAKRLSISKRTLYEIYQNKEEL LLEGMKAAEAEFDAHMKAFSFQQSNNVMDILIEFYHYQVTKLAKITPAYYEDLHKYSLIT EYLHSKQSERDKNASLFIKKGIQEGFFRTDINYSIVTQIARESVHYAMMNQLYKEHSIQE VFSNIILLFIRGICTLKGLQRLEDLS >gi|281306462|gb|ADEF01000004.1| GENE 119 140222 - 140383 161 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879631|ref|ZP_06288362.1| ## NR: gi|282879631|ref|ZP_06288362.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 53 1 53 53 72 100.0 6e-12 MTKFQRFEKDQELRREELIRNIEYSISQLSVAELESLYYDMMTKQYVGKNQEG >gi|281306462|gb|ADEF01000004.1| GENE 120 140457 - 142712 1987 751 aa, chain - ## HITS:1 COG:FN1482 KEGG:ns NR:ns ## COG: FN1482 COG0317 # Protein_GI_number: 19704814 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Fusobacterium nucleatum # 49 750 20 725 725 364 33.0 1e-100 MGEKILSLWQQKDWDMSKKFEFTDTERQEYLDIFKRIHQSIGESFQDNDEENIREHLKAC VENGQVDRDVFGLNPLLNALQTAEIAVHEIGLKRDGVIAILLHQSVVNGILTIEEVGAKY GDTVAHIIHGLVKIDELYRKNPVIESENFRNLLLSFAEDMRVILIMIADRVNLMRQIRDV SNIDAKHQVSEEASYLYAPLAHKLGLYQLKSELEDLSLKYLEHDAYYHIKEKLNATKQAR DKYIATFIEPIEKKLTSAGLKFHMKGRTKSIHSIWQKMKKQKCGFEGIYDLFAIRIILDS PLEKEKMQCWQTYSIITDMYQPNPKRLRDWLSVPKSNGYESLHITVLGPQNKWVEVQIRT ERMDDIAERGLAAHWRYKGIKSQGNVDEWLAGIRTALEAGDDLQVMDQFKLDLYEDEVYV FTPKGEIKKFPKGATVLDFAYYIHSRIGSTCVGARINDKNVSIREQLKSGDTVEIITQNN QKPNPNWLHIAKTSRAKSKIRLALKETQAKDGLYAKELLERRFKNKKVDLDEAIMSHLVK KMGFKEVSEFYKQIADEKLDVNDIIDQYIDLRDKELNSISTRPAQSAEDFNLEKPDVQSH SSNDDVLVIDRNLKGVEYSLAPCCHPIYGDAVFGFVTVSGGIKIHRKDCPNAPELRKRFG YRIVKARWSGQGSSLYTITLKIIGNDDIGIVNNITSIIAKEEKILMRSINIDSHDGLFSG NLSIQVDDVSKLDALVKKLETVKGVKQIQRL >gi|281306462|gb|ADEF01000004.1| GENE 121 142808 - 144325 1254 505 aa, chain + ## HITS:1 COG:no KEGG:PRU_1211 NR:ns ## KEGG: PRU_1211 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 6 504 1 493 493 660 63.0 0 MTQQDLQQISQRGMTEEQVNQQLENIKNGFPFLELQAAASTEHGIMVADELQKKHYVELW NQYKQGNHRIVKFVPASGAASRMFKDLYAFLHASYDVPTTDFEKEFFGNIKKFAFSEELT EKCKENEGQKMTKLMAQGKYKKVVENLVEPKGLNYGQLPKGLLLFHYYEDDARTPMEEHL VEAALYTSCHGEAYIHFTVSHQHLDLFKKRVAEVVNRFSKRYKVQYHISFSEQKPSTDTI ATNMDNTPFRNEDGSLLFRPGGHGALIQNLNDIEADVIFIKNIDNVVPDRLKTDTVTNKQ LLGGILIEVQEQCFHYLNMLEKGKYTHDQLEDAIRFVQRDLTCRNPRLKYMEDEELIPYL KAKLNRPLRVCGVVRNVGEPGGGPFIAIGKDKATSPQILESSQIDKSNKEYVRMFEHSTH FNPVDLVCAVKDSKGQPFNLPDYVDPETGFVSYKSKDGKELKALELPGLWNGAMSNWNTV FVEVPLTTFNPVKTVNDLLREQHQP >gi|281306462|gb|ADEF01000004.1| GENE 122 145283 - 146278 1032 331 aa, chain + ## HITS:1 COG:BB0176 KEGG:ns NR:ns ## COG: BB0176 COG0714 # Protein_GI_number: 15594521 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Borrelia burgdorferi # 32 331 36 337 337 304 51.0 2e-82 MAEAIDIRELNIRIEQQSGFVTNLVQGMDQVIIGQKHLVDSLLIALLSDGHILLEGVPGL AKTLAIKTLSQLIDADYRRIQFTPDLLPADVIGTLIYSQKEERFQVKKGPVFANFVLADE INRAPAKVQSALLEAMQEHQVTIGENTYKLPHPFMVMATQNPIEQEGTYQLPEAQVDRFM LKVVLDYPTLEEEKLIVKENIQGGLPQVKPVTTAEEILKARTIVNEVYIDEKIAQYIADI VFATRYPERYELPELKNMITFGGSPRASINLAKAARTYAFIKHRGYVIPEDVRAVVHDVL RHRIGLSYEAEASNLTSEEIVSKIINKVEVP >gi|281306462|gb|ADEF01000004.1| GENE 123 146360 - 147250 704 296 aa, chain + ## HITS:1 COG:BB0175 KEGG:ns NR:ns ## COG: BB0175 COG1721 # Protein_GI_number: 15594520 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) # Organism: Borrelia burgdorferi # 3 282 8 278 291 138 30.0 2e-32 METSEILKKVRKIEIKTRGLSQNIFAGQYHTAFKGRGMAFSEVREYQFGDDVRDIDWNVT ARFNHPYVKVFEEERELTVMLLIDVSGSLDFGTKKQTKREMVTEIAATLAFSAIQNNDKI GVVFFSDRIEKYIPPKKGRKHILYIIREMLDFEPQSRKTDVGMAIEYLTRMMKRRCTACI LSDFYIKHETAEYEHFEHALTIANHKHDIVAVQVYDQRAKSLPDIGLLKIRDAETGHEML IDTSSAKLRRTHTAYWLERAAKLKQIFAKGGVDWTSVATDEDYVKAMMRLFAQRGV >gi|281306462|gb|ADEF01000004.1| GENE 124 147351 - 148388 929 345 aa, chain + ## HITS:1 COG:no KEGG:PRU_0758 NR:ns ## KEGG: PRU_0758 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 4 344 15 354 355 334 51.0 3e-90 MWCLGLHAQIGVQQRLDSVGIFIGQQINMTIDVTAPKNATIHFPALKPSHYLVPGVEILE ISNGDTTALDNGFVKVSKQYTLTSFDEHLYAIPGQKVQVNGKDYVGNTLALKVVTVDVDT LHPNQFFPPKDVQDNPFSWKEWSPIFWLSVLMLLLCVLGFYLYLRIYNNKPIITRIRIIK KIPPHQKALTAIDKLKSERMVSSPDQKTYYTELTDTLRQYIEERFGFSAMEMTTTEIIYT LHKKGDKKMIDELKSLFETADLVKFAKYETLTNENDKNLVNAINFIDQTKIEGEPTEERI VPKLDEKDRRTQKTRKTIKMLLTAIGISVFALLIYIVYQVYLLMV >gi|281306462|gb|ADEF01000004.1| GENE 125 148424 - 149422 488 332 aa, chain + ## HITS:1 COG:VCA0172 KEGG:ns NR:ns ## COG: VCA0172 COG2304 # Protein_GI_number: 15600942 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Vibrio cholerae # 8 324 9 318 318 153 32.0 4e-37 MEFVNKEYFLLLLLLIPYVIWYFLYRKKSEPTMKMSDTHAYLFAPKSWRTRLVHAPMVLR CLAFIFIICVLARPQTHNAWDERSVEGIDIMLAMDVSTSMLAEDLKPNRLEAAKNVAAEF ISGRPNDNIGLTIFAGEAFTQCPMTTDHTSLLNLLRNVRTDIAARGLISDGTAVGMGLAN AVSRLKDSKTKSKVVILLTDGSNNMGDISPMTSAQIAKSLDIRVYTIGVGTNKVAPYPMS VGGGTQYINIPVEIDSKTLSDIAAVTEGNFYRATNNQQLKQIYKDIDKLEKTKMNVKKFS KRYEAFQPFALLAVLSLLLELLLRNTVLRRIP >gi|281306462|gb|ADEF01000004.1| GENE 126 149521 - 150546 827 341 aa, chain + ## HITS:1 COG:VCA0171_1 KEGG:ns NR:ns ## COG: VCA0171_1 COG2304 # Protein_GI_number: 15600941 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain # Organism: Vibrio cholerae # 65 250 58 244 336 92 29.0 9e-19 MIRFDDPIYLWLLIVIPILALIRLIGYRRRLVKLKKFGDIELVQQQMADISKYRPTVKFW LLQSALALLIVMLARPQMGSKISNEKRNGIETIIALDISNSMLAEDVVPSRLAKSKLLVE NLVDNFTNDKIGLVIFAGDAFIQLPITSDYVSAKMFLQNTDPSLITTQGTDIARAIRLSM SSFTQQDKVGRAIILITDGEDHEGGALEAAADANKKGINVFILGVGNTQGAPIPVAEGGY MKDENGQTVMTALNEKMCQDIARAGKGTYIHVDNTNDAQKKLNDELAKLQRGETNSVIYS EYDEQFQAFGILALLLLIIEVCILESKNPLLKNVRLFKKKQ >gi|281306462|gb|ADEF01000004.1| GENE 127 150554 - 151243 547 229 aa, chain + ## HITS:1 COG:no KEGG:PRU_0760 NR:ns ## KEGG: PRU_0760 # Name: not_defined # Def: putative BatB/BatC protein # Organism: P.ruminicola # Pathway: not_defined # 5 229 341 566 566 170 50.0 4e-41 MSIKKKRHIFSLLLLTLGFTSMFAQSDRQFIRSGNKLFRAQNYAKAEAEYRKAIAQNAQN SQALYNLGCALMMQQKDSAAIVQYENAGKIETSKSRKAKVFHNIGVICQTHQMYGEAIEA YKESLRNNPQDNETRYNLALCKRLQKQQKKDNEQKKKDDKKGKDKEKKDNQQQKQKDNQQ KQQNKPKDRMSKENAEQLLNAAMQQEKATQQRMKKAEQQPRSRKLKRNW >gi|281306462|gb|ADEF01000004.1| GENE 128 151275 - 153872 2375 865 aa, chain + ## HITS:1 COG:no KEGG:PRU_0761 NR:ns ## KEGG: PRU_0761 # Name: not_defined # Def: putative BatD/BatE protein # Organism: P.ruminicola # Pathway: not_defined # 11 865 6 853 853 1003 60.0 0 MNRYIKYTSILFIFSVLCALNTYAQSISVSVPSQVAVGENFRLSYTINTQNVEDFRAGNI PSAIEIIAGPYTSSQSSYQMVNGKTSSSSSITYTYTLYASKNGTFTIPAARARVNGKVIS SRSVKVTVSGSARKGHGTPSMRDDEGADMPMRSAGSRISGNDLFIKVSANKRRVHEQEPI LLTYKVYTLVDLTQLEGKMPDLTGFHTQEIKLPQQKNFHIEKVNGKNYRCVTWSQYVMYP QMTGKLKIPSITFKGIVVQQDRAVDPFEAFFNGGSGYVEVKRNIKAPEINIQVDPLPKRP NDFSGGVGKFNISASINHSEVKAGEPLSLRVVVSGIGNLKLMKQPTVEFPKDFDKYDAKV TDKTKVTANGVEGSMVYDILAVPRNQGKYQLPPIKFTYYDTGSNSYKTIQTQSFQLNVKK GKVNADNVADYSQTQENDIRNIKEGMTKQHAIDKFFFGSTAYWISLLVPFIAFVVLLIVF RKRALEHADVVKMRGKKANKVATRRLKKARQLLEQNKQNEFYDEVLRALWGYVSDKLNMP VEQLSRENIADNLHHQAVDDETVNTFLSALDECEFERYAPGDASGNMNKTMDSAITAIMN IENVLKSVAKMNKNAHRRTNLTLLLFAMLLWSTAISATTKQEADMAYKHGSYQEAIKMYE ELLKQGVSADLYYNLGNAYYRTDDLTKAILAYERASLLSPGDDDIKFNLQFASAKTIDKI TPESEMFFVTWYHSLVNYTSVDNWANMAIVSIVLVLVLALLYLFVPNLLLRKVGFYGGCC FLILFVMSNFFAYQQKHLLMNRTGAIVIAPATQVKKTPSNSSTDEFVIHEGTKVYITDKG LKDWRGIRLSDGREGWLKTTEIEEI >gi|281306462|gb|ADEF01000004.1| GENE 129 153897 - 154595 285 232 aa, chain + ## HITS:1 COG:no KEGG:PRU_0762 NR:ns ## KEGG: PRU_0762 # Name: not_defined # Def: PAP2 domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 4 230 3 229 229 192 42.0 1e-47 MDIQALIELDQQVLQSLNGSNSLFWDGMMMTITSSITWIPLYLSLLYLIIKNNETMSQIL LIFGFACLCLLLSTGVADISIKPWIERMRPCNDPMLKYQIEAVNNYRPRTFSFFSGHASN TLSIAIFICLLVRSRLLSVFLITWSLLNAYTRLYLGVHYPSDIFAGLIWGTGVGFFTYYL FQRLSHRVIAKGNFISSQYTNTGYNFQDIDMVIFIFVSTLLYSTLKALILYT >gi|281306462|gb|ADEF01000004.1| GENE 130 154616 - 155914 934 432 aa, chain + ## HITS:1 COG:VC0739 KEGG:ns NR:ns ## COG: VC0739 COG0809 # Protein_GI_number: 15640758 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Vibrio cholerae # 6 430 1 345 352 211 33.0 3e-54 METKHIHISDYQYELPDERIAKFPIAQRDHSKLLIYNHGKVGEDVFYNLYEYLPQGALMI FNNTKVIQARMHFKKDTGALIEVFLMEPAMPADYEQIFQSKRHCAWYCMIGNLKKWKSGS LTRIYHINQKSVTLQVTRREPATDEHQPAQGLHATPSTHHWIDFDWDAEDVSFAEILESI GELPIPPYLNRETQESDKTTYQTVYSKIKGSVAAPTAGLHFTNSVLQSLDEHGIDREELT LHVGAGTFKPVKSEEIKGHAMHTEYICVHRQTLEKLLRHNVEAIAVGTTSVRTLESLYYM GVFLETHPDATEDELHVKQWAPYERLHTDGQVEHLDGGLIDNISPKQAIQNVLDYLVRNE LESLHSSTQIIIAPGYQYKIVKMLITNFHQPQSTLLLLVSAFVNGDWRTIYDYALAHQFR FLSYGDSSLLIP >gi|281306462|gb|ADEF01000004.1| GENE 131 155965 - 157137 935 390 aa, chain + ## HITS:1 COG:no KEGG:BVU_0331 NR:ns ## KEGG: BVU_0331 # Name: not_defined # Def: putative DNA mismatch repair protein # Organism: B.vulgatus # Pathway: not_defined # 1 389 1 361 362 354 50.0 3e-96 MKIGDKVRFLSESGGGVIAGFQGKNIVLVEDEDGFQIPTPINDVIQVIDDDYSTGKVVGS TLPKPTSVKNALTSSAPDDEEEPIDDDPSTKEITFRTPAEERKGGNLLSCYLAFVPMDMK DMTHTRFESYFVNDSNYYVRFTYLSAEGNSWKLKSSMEVEPNTKEFIEEFGKEDLNDLGH VAIQLLSYKRDKSFMLKPTIDVQFRIDTVKFYKLHTFQENDFFELPALLYTIVENDKVTR PLVVDSKQLKEEMYQKEPKDHIEVTKADEKENDTYVRRYNARKQTGNPFQLKHRGDEDIV VVDLHAHELLDTTTGMSAIDILNFQLQKFRDTLQQYKDKKGQRIVFIHGKGEGVLRRALI NDLNYRYKKYQYQDASFQEYGYGATQVTIR >gi|281306462|gb|ADEF01000004.1| GENE 132 157179 - 159239 1685 686 aa, chain + ## HITS:1 COG:CAC1050_2 KEGG:ns NR:ns ## COG: CAC1050_2 COG0171 # Protein_GI_number: 15894337 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Clostridium acetobutylicum # 352 679 1 309 310 406 57.0 1e-113 MMNSGFVKVACAVPLVKVADCIYNVEQTKAQIQQAEEQGVEIIVFPELGITSYTCQDLFQ QKLLLEASEVSILHLLDFTRQLDVISIVGLPIVVGDLLLNCAMVIQRGQILGVIPKTYLP DYSEFYEKRWFASSQDLKETTIRYAGQNIVVTPDPQIYTTDDGVQFGVEICEDVWAPVPP SNTLALAGADLIFNLSASDAVIGKYDYLKSLLSQQSSRTITGYIYAASGYGESTQDLVYA GNGLIYENGVLLAEGKRFTMESQIHCAQIDIEMLRAERRINSTYVNAQRQVNTFASQRGF SSSLSPNQFAIFNNTSAIHYIPCIAPENETTFTLEREINPHPFVPAPNLLPDSCVEVLNI QTMALATRLSHIQAKTAVLGVSGGLDSTLALLVCVMTFDKLGLDRKGIIGVTMPGFGTTG RTYHNAMDLMHKLGITVKEINIEKSVMQHFEDIGHDPQVQDVTYENSQARERTQILMDLS NQLNGLVVGTGDMSELALGWATYNGDHMSMYAVNAGVPKTLLRHLVNYYAQHLAENQDIA KILLDVINTPISPELTPANEQGKIEQKTEDLVGPYELHDFFLYYVLRFGFRPSKIFLLAK KAFAESMAQEGQPQPNDALQMKGQYDEETIKKWLKVFFKRFFSQQFKRSCLPDGPKVTSV SLSPRGDWRMPSDAISRLWLEECDTL >gi|281306462|gb|ADEF01000004.1| GENE 133 159330 - 160448 775 372 aa, chain - ## HITS:1 COG:no KEGG:PRU_1517 NR:ns ## KEGG: PRU_1517 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 365 1 363 371 335 45.0 2e-90 MKILLLGEYSNVHWTLAEGLRQLGHMVTVVSNGDFWKNYQRDINLTRTYTKLGSISYMIK LYSLLPRLRGYDVVQIINPICLEIKAQRILPIYQYLRKHNKKMFMGAFGMDYYWVHTCCT DMPLEYSDFNMGKELRQTTDALKEQRDWLGTEKQRLNEYMAHDCDGIIAGLYEYWVCYHA HFPDKTTFIPFPIRTKTMRERQPMTNGDHRLKLFIGINRERSIYKGTDIMLKAAQDLVLK YPHQVSLQIAESVPFEQYQRMTNETDVILDQLYSYTPAMNALEAMSKGIVCVGGGESENY QLLHEDTLRPIVNVKPCYESVYHELESLILHPERLSVLQQQSIAYIQKHHDYVKVAQQYV DFYNSSEPVAKK >gi|281306462|gb|ADEF01000004.1| GENE 134 160445 - 161335 497 296 aa, chain - ## HITS:1 COG:BS_ggaB_1 KEGG:ns NR:ns ## COG: BS_ggaB_1 COG0463 # Protein_GI_number: 16080621 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 2 194 23 226 519 79 25.0 9e-15 MVIECLDSILMLSLDAQNCEIIVVDDGSDTSLLGALNAYLDKIVYIRQPNQGLSSARNMG LSIAQGKYIQFVDGDDALIPFVYEHCLDLVRCQDAEMVKFDLTRNKKQDNNYNIEGPMTG SQYMNTHNLKATACGMIFRRDLLQGLRFTPGLLNEDEEFTPLVILRTERLYITDAKAYYY RKRDNSCTTSKNKKTQLQRLQDTLRILGQFQQRIDTLPLMERNAMQRRIAQLSMDYIYNV ARYTHSLRRLETALQEMRRHGLYPLPDKRYTRKYSLFRRLIRTKAGRYLLILLTSR >gi|281306462|gb|ADEF01000004.1| GENE 135 161374 - 162294 644 306 aa, chain - ## HITS:1 COG:BS_yveT KEGG:ns NR:ns ## COG: BS_yveT COG0463 # Protein_GI_number: 16080481 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 2 251 4 257 344 138 32.0 1e-32 MLLSIIIPVYFVEETLQRCVKSILQQTFTDWELILVDDGSPDGCPALCDEYCQQDARIKV VHQANGGLSAARNTGLLQAQGSYVTFVDSDDYVRKDTYQQVMQQLVEQPEIDIIEYPITL HTGNKQREKILSFPAKRYSNMLTYWFESQAYLHTYACNKVYKRKLFNQVRYPVNKVFEDV YTLPLLLRQSKVVATTDKGMYFYVDNPQGITATAGGEQLKDLLHAHLAVLQNSQLTEHEG FANYYEHILNIQMDVCEMTGAQPTLPSFSFRGQQDIPFKTRLSSLIGIQRLCQLNQFIHK VYRRSR >gi|281306462|gb|ADEF01000004.1| GENE 136 162629 - 164134 898 501 aa, chain + ## HITS:1 COG:MA3382 KEGG:ns NR:ns ## COG: MA3382 COG0174 # Protein_GI_number: 20092196 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Methanosarcina acetivorans str.C2A # 1 499 1 504 506 561 52.0 1e-160 MTKAELAMNANPVVAFLQKPTEEFTKADIIRFIEANEVKMVNFMYPADDGKLKTLNFVIT NRDYLETILTCGERVDGSSLFSFIEAGSSDLYVLPRFSTAFLDPFAEIPTLCMLCSYFDK DGNPLASSPENTLRKACRAFRETTGMEFYAMGELEYYVIDEDPEVFPAIDQHGYHESAPY AKMNDFRQQCMLYVAQTGGEIKYGHSEVGNFTEDGLLYEQNEIEFLPVYAEKAADQLMLA KWAIRNLAYEMGLNVTFAPKITVGKAGSGLHIHMRMVKDGKNQMIDGGKLSAAARKAIAG MMDLAESITAFGNKNPTSYFRLVPHQEAPTNVCWGDRNRSVLVRVPLGWTAGIDLCHAAN PQEPEAIADTSAKQTVEMRSPDGSADLYQLIAGLCVACRHGFEMENALEVADSTYVNVNI HDAANADKLSKLAQLPDSCCASADCLERQRAVYEEKGVFSKAVIDGIIKQLRSFNDRTLR HDIEKNHDATKKLVQEYFHCG >gi|281306462|gb|ADEF01000004.1| GENE 137 164638 - 165930 669 430 aa, chain - ## HITS:1 COG:no KEGG:PRU_0475 NR:ns ## KEGG: PRU_0475 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 33 415 22 399 405 365 50.0 2e-99 MFQRKNIYTSILWLSIFFISCAIPTTILGQNAQIYKESIASLQVVAGDDWLSPPVTTLGG LPINISFDDLTHEYHRYTYSIEHSEANWTPSTQLFESDFLSGFAEDNIIKNFQKSVNTKV QYTHYSLQIPNAECQLKISGNYRLTVYDANNDNEKILSVCFMVVEPLAQIGLDVTDNTDW DIRGNHQQVNMTVRYGNLSVTDPQKQLQTVVLQNGIWTQQRFNIKPQYVTPEGLRWEHNE ALIFDGGNEYRKFETLDVNHPTMGIETVGWDGTDYHAYVWTDEPRPSYVYDEDANGSFYI RNSDNIENNTTSEYQIVHFRLRAPQQTGEVYLHGNWTHHQLAPEYRMTYHRDTKCYEGSV LLKQGYYSYQYVVAKNQNEIKPVSSEGNFYETENKYQALLYFRGAGERTDRLVGYQQVSF KIGTTTSLNQ >gi|281306462|gb|ADEF01000004.1| GENE 138 165955 - 168333 1660 792 aa, chain - ## HITS:1 COG:no KEGG:PRU_1228 NR:ns ## KEGG: PRU_1228 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 30 788 1 751 755 1016 65.0 0 MIKLRLLLLPLFVLCALCVQGQTFILQGKVVDEQLNPIELASVSCLAQGKATVTSLKGEF SIRLHTADSVVVKFSMIGYRTKKRVLRSPKGKQTLQIVLFTDETTLDEVHVKGEQIQTGQ TQNIKAEHAKNTPSATGNAIEDLIKTQAGVSSHHELSSQYNVRGGAFDENSVYINNIEVY RPFLVRSGQQEGLSIIHPDMVEKIGFSTGGFAAKYGDKMSSALDITYRQPKPFEANLSAS MLGASAFVGFRTKKFSWSNGIRYKTNQYLLGSLQTKGEYKPAFLDYQTFWVYTPNQRWKV SMIGNISDNHYQFTPQNRETSFGTLKNVKSFKVYFDGQEKDRFTTYFGAMDITRHFGDST SISLLASAFYTNEREKYDIQGQYWLTQTETSENLGVGTYFQHARNYLQAHVENVKLMARH TTKRHRIEAGITYKFERINEYAAEYEMRDSSGYSIPHTGKDLYMIYALRANNQLKSNRIE TYFQDTYRFTNKGGNTHYTLNYGIRMSHWSFNKELVVSPRLSLGIIPAFNENMTFRVATG LYYQTPFYKEVRDTTTINGITYARLNEKAKSQRSIHFITGMDYRFRVNNRPFKLTTEIYY KALSNLIPYSINNVKVVYYGDNKSSGHAMGIDFKLYGEFVPDRDSWISFSLMDARMKLNG KTIPMPTDQKYAVNLFFTDFFPGTNRWKMSLKLAYADGLPFAAPHKELERNSFRAPAYKR VDIGMSYRLFNNEERRTKSIFKNIWLGVDGLNLFGINNVNSYYWITDVTNQQYAVPNYLT GRLINGRILFEF >gi|281306462|gb|ADEF01000004.1| GENE 139 168807 - 169952 785 381 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879652|ref|ZP_06288383.1| ## NR: gi|282879652|ref|ZP_06288383.1| hypothetical protein HMPREF9019_0819 [Prevotella timonensis CRIS 5C-B1] # 56 381 1 326 326 640 100.0 0 MAIIKCPECGHQISDRAPICPSCGVKIANQITTCPQCGEVFFKDLRRCPRCQHLNMDYQN GISQSEDEETTPTDNPTSLPENGEQPSPKEPNKKKKTTSLWIGFIIAIAICCGGYYFYSQ AQHNQEKEAYAFALASSDPIVLQDYLDRFKNAPTAHRDSILSHLSALQSMDQEWTDALVS NSKNALQNYIDQHPDSPHKAEALRKIDSIDWVSVSMAHTLDAYQVYLEDHPNGAYVDMAK DGIKRINAATVQPEERAMISNLFRQYFQYIDQKDAEGLSSLMNPIISSFLGKPDANKNDV VLFLHKLYREDVASMNWHLLNDFKIEKKEIGDEEYEYSVNFSVNQDIEKVDNTQTSNHYR VKAKVNPDDKITEFNMTRIIQ >gi|281306462|gb|ADEF01000004.1| GENE 140 169993 - 170706 475 237 aa, chain - ## HITS:1 COG:yegX KEGG:ns NR:ns ## COG: yegX COG3757 # Protein_GI_number: 16130040 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Escherichia coli K12 # 33 213 70 253 275 121 33.0 1e-27 MKRIATLLLFISMVIVANAQYFDVQCEDTCTHVHGIDLSHYQGEVFWEAVGENTKNAYVY LKATEGGNNIDPTYQLNIQLANKYGLKVGSYHFFRPKTNLTLQLQNFMTQCRPKDQDLIP MIDIETKSGLSTEAFCDSLHKFLGMVEEAYHQKPLIYTGANFYDHYLVGQLDNYKIMIAQ YTSREPVLKDGRDITMWQYTGKGRINGINTFVDKSRMMGRHGLREIRFRRDTGSKRP >gi|281306462|gb|ADEF01000004.1| GENE 141 171217 - 172026 465 269 aa, chain - ## HITS:1 COG:no KEGG:PRU_0877 NR:ns ## KEGG: PRU_0877 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 269 1 269 269 139 35.0 1e-31 MDIIKRNFFRLLRSGALNEYVTLEPMSNFKWRRLFQLLESQKIESIALKGIKNHQYDTNI HIPEQLIQALAANTVKEETLTKDTPPTLSNRFLNRKLNKIRHDEYHSIDTSTDTLALLDI ILFNITHILNYGISLRGILELGKFLRTRGDKVDFVKLETWLNELHIQRITQLQGSILIEV FNFEQDEIPFVQEVERNSYALALRTLTHTEIDTSKEWHFRQSKAGFVQNNNVVLKRNLKR SIRYINYAPIETTSSFLANLGRSLSEIEE >gi|281306462|gb|ADEF01000004.1| GENE 142 172060 - 173124 750 354 aa, chain - ## HITS:1 COG:BMEI1385 KEGG:ns NR:ns ## COG: BMEI1385 COG1879 # Protein_GI_number: 17987668 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Brucella melitensis # 4 346 2 339 343 90 26.0 5e-18 MAAKIRIKDIALRAAVSVGTVDRVLHNRPNVSKVAREKVEQALKEMDYQPNMYASALAYN KSYTFYLLIPQHEFEAYWEEIEEGAKRAIEIRRDFYLELKIFNYERSDEQSFLQVAAKCI EQQPDGVIVVPSTLEVTRQFTDQLHEQKIPFVMLDSYMPDLNPLSFFGQDSFRSGYFSAR VLMLIANKEKEIAIMKRIKGGKVSTKQQANREVGFRHYMYDHFPEINILEMEVPMAATRK EYDEIIEHFFELHPEVHHCITFGSKAHIVGDYLLRKNRRDIQIMGYDMVEKNAKCLQQGS ISFLIAQHAYQQGYSCIETLFRAIVLKKKVEPVNYMPIELLAKENMDFYRRTQL >gi|281306462|gb|ADEF01000004.1| GENE 143 173282 - 176842 1953 1186 aa, chain + ## HITS:1 COG:MA4377_3 KEGG:ns NR:ns ## COG: MA4377_3 COG0642 # Protein_GI_number: 20093164 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Methanosarcina acetivorans str.C2A # 591 718 143 254 311 65 35.0 6e-10 MFIKKLPTYPALILLFFWCCVTVVSCSAPHPTEVVALNEKAYAFRYRNLDSTTFYAQKAL KLSKTRSGDYAEALNNLAFVSLAKMQYQQADSLLSLIFQNTNNQIEQLIADVQMMRLCQR CSENKNFYVYRERAIRRFKRIKEESANLSDHQELRMIYAESEFNITNSTYFYYVGLENES VEAINVIDVNGDITRDTTQLLNYLYNVGAGGVILNGTREEINQAEFDYLIRCYQLSKQFH YPYWEANSLQAISERLQRKKYRDKLIHDNLPSFQYLNPYHMPDSLLAGHLAQRALDKFQK YGDVYQTAGAYRTLAQCYWELHDYPSALICLTNALNTNQAILQAPDLVASIREQLSLVYS AMNDKQKSDYNRNLYLDIQEGTRQDRQLEARAEQLNQSLRILNRMIVAIVLMIVFVSFLL WMFDWMRKRNEKRTSVLEKLLEPLEEWKVENEKFLSTYQERYEEMEERKEMTEVRLSQNK RRNLEQRAKLSLVQIVLPLIDRILHEVHRLCDRQENSQIRAERYTYIAELTDQINQYNAV LTNWIQLRKGYLSLKIESFPLQDLLDILRRNRMSFRLKGIELNIQYTDAVVKADKTLTLF MLNTLCDNARKFTPSGGKVRVYANNERDFVEIVVEDTGIGMTSEQLHQLFDHKPIVDSAA PDSASLQKHNSRVSHGFGLMNCKGIIDRYKKISKIFDVCTIQAESEYQKGSKFLFRLPKG VVRLLLTIALLGSQLAMPLFAKQLVTSAHSSSHGNTSMKINKDAASMASAFADSVYQSNI NGTFHKTLIYADSCISYLNKMYLAQYPQKADTMVLITGSTALPAEIQWLHQHVSMPYNLI LSMRNEVAVAALGLKYWNLYSYNNQVYIQLFRERSADNTLSTYVKMMQKSESNKNIAIAL LSFIFLLIFPAYYFLYYRHRIYYQFCVHKIDNINQVLLGEDSAKNKLAKINKLWASNKQI FNPQFSRLNAIVAQIQSALKQRIQTEEVQVHEMEILEDDLHRSDYENSQLYISNSVLDNC LSTLKHETMYYPSKIKLLVEKKDENLAPLKEISTYYRDLFKILSAQAMRQVDNTSRVDDE LLQYLFDMLQQQNKAKPIMQIHQRDETYTFIDLTMQNLQLSDEALSALFTPDTHDMQFWL CRQIIRELGEATNARACGIEARRLADGYVHILITITNQTWKNLKLS >gi|281306462|gb|ADEF01000004.1| GENE 144 176818 - 177543 716 241 aa, chain + ## HITS:1 COG:no KEGG:PRU_0870 NR:ns ## KEGG: PRU_0870 # Name: not_defined # Def: response regulator # Organism: P.ruminicola # Pathway: not_defined # 1 240 1 238 239 349 80.0 4e-95 MEKFKIIIVEDVPLELKGTEGIFKNEIPEAEIIGTAANEQAYWQLIKKEIPELVLLDLGL AGSTTVGVEICRQTKAMYPQVKVLIFTGEILNEKLWVDVLDAGCDGIILKSGELLTRGDV ASVMSGKRMVFNQPILEKIVDRFKHTVNNELMKQEAFINYEIDEYDERFLRHLALGYTKE QITNLRGMPFGVKSLEKRQSELIQKLFPDGNQGVGINATRLVVRAIELRILDIDNLQPDE T >gi|281306462|gb|ADEF01000004.1| GENE 145 177533 - 178135 284 200 aa, chain + ## HITS:1 COG:no KEGG:PRU_0869 NR:ns ## KEGG: PRU_0869 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 13 197 10 193 195 123 43.0 4e-27 MKHKIFAISIFIFIVLQILVILGSWFVTVVFPTLPVRSMLSSEGIRWFLGQYTSNLASPL LVWLVLAGMTYGALRSSGLSRAIMYFSNISYRQRFALKVVVAELVFFAIVVFLMTFLPQA ILLSVTGELFPSSFSRSLIPIVCFLLTLFSITYGLINASFSSLTDIFNSLTSGITAISPW LVIYVFVIQLYYSILFVVVT >gi|281306462|gb|ADEF01000004.1| GENE 146 178483 - 180258 1189 591 aa, chain - ## HITS:1 COG:RSp0020 KEGG:ns NR:ns ## COG: RSp0020 COG0038 # Protein_GI_number: 17548241 # Func_class: P Inorganic ion transport and metabolism # Function: Chloride channel protein EriC # Organism: Ralstonia solanacearum # 9 443 27 447 461 159 28.0 2e-38 MLINEINNWRKEHLTTRQITVVLSFFIGIFASVAAYVLHFIIRQIQYLLTARFDTDTFNW LYLVFPAIGIYITTLFVRYIVKDNISHGITQVLYAISTKKSRLKVHNCWSSVIASAITIG FGGSVGAEAPIVLTGSAIGSNLGRLFKMDNKTLMLLVGCGAAAAIAGIFKAPIAGLVFTL EVLMVDLSMASLLPILTSCVTATVFTYIFTGNRALFDFTLDSAWNIERIPASILLGLFCG IASLYFIRMMTKCEGVFARLQHHPYAKLMLGGVLLSSLIFLFPSLYGEGYDSLNILLNGR TEADWDAVMNNSLFSGHAELLVIYISLVLLTKIFATSATNGAGGVGGTFAPSLFVGGFGG FLFARVWNMNQIGVYIPEKNFTLLGMAGVMAGVMHAPLTGVFLIAELTGGYDLFLPLIMV SIVSVMAISIFEPHSIYAMRLARQGRLVTHHTDRSVLTLMSLDSVIDKNFTAVEPEMPLG ELVNAISKSHTSFIPVVDTAGVLVGIIDINKIRHVMFRTELYHRFTVSQILIPPQATLGI HDSMEEVMEKFDKTNANYLPIVDVNDHLTGFVDRTRLYSMYRKTVADFSAE >gi|281306462|gb|ADEF01000004.1| GENE 147 180403 - 180933 502 176 aa, chain - ## HITS:1 COG:MK0635 KEGG:ns NR:ns ## COG: MK0635 COG0009 # Protein_GI_number: 20094073 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Methanopyrus kandleri AV19 # 1 176 20 193 212 93 31.0 2e-19 MKQGGVILYPTDTVWGIGCDATNAEAVAKVYKIKKRDDSKALICLVDSDARLQRYVRNVP NVAWDILDIATKPTTIILDGAINLAPNLIAEDGSIALRITKEPFSHELCYRFQKPLVSTS ANISGEPAAANYNDISQELLDAVDYVCFSRRQEHKPHTPSSIIKLKEDGEVTIIRK >gi|281306462|gb|ADEF01000004.1| GENE 148 181351 - 182316 795 321 aa, chain - ## HITS:1 COG:CAC1723 KEGG:ns NR:ns ## COG: CAC1723 COG0223 # Protein_GI_number: 15895000 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Clostridium acetobutylicum # 6 319 2 300 310 220 41.0 3e-57 MTKEDLRIIFMGTPEFAVASLQALVQGGYHVVAVVTQPDKPVGRHQQTLQASEVKKYALS QNLPVLQPAKLKDPDFLTQLADYKADLQVVVAFRMLPEVVWSMPRFGTFNVHAALLPQYR GAAPINWAIIYGETKTGVTTFFLDHNIDTGRIIMQKQLPIPEDADVEYVYDKLMVLGAEI CLDTIDKLLANDGKIAATPQNQLVQSEHNLLPAPKIFKETCEINWNQSARDIYNFVRGLS PYPAAWTTWNISKDDPTSKQVMIKIYKTQLTGEATTEKPGSINTDQRRIYVATTTEWLEI TELQMAGKKRMNAKDFLNGWR >gi|281306462|gb|ADEF01000004.1| GENE 149 182363 - 182620 105 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKSYFIYYIYHNNDYLDYLNSFGLMFSLYLKVKLRIFLHCEVTHIQGFLNDVPFLDVLL IFYFHYSTNPVADKAVSKHGCCRQP >gi|281306462|gb|ADEF01000004.1| GENE 150 182589 - 183542 630 317 aa, chain - ## HITS:1 COG:lin1064_1 KEGG:ns NR:ns ## COG: lin1064_1 COG1705 # Protein_GI_number: 16800133 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Listeria innocua # 31 179 43 201 201 83 38.0 5e-16 MILCNFVAMSSDMKKIIMLTLLFVASVHSWAQMKWNQAYQLYINQYKDLAIKEMLKYKIP ASITLAQAVFESGAGRSRLARLGNNHFGIKCHDWLGNTINEDDDEFGECFRAYDNPLHSF EDHSKFLVNSPRYRSLFSLKQTDYKGWAHGLKACGYATNPQYAYKLIELIELYKLYVYDQ AKGYDNFMADEASIRTNVNNSQPLHPIAMFNDNYYLRARQGDTFKLIGKEVGISYRKIAK YNERHKDDPLQEGEIIFLKKKRKKAPKVFKNHPHIVKPGESLYIIAQIYGMRLSSLYKLN NFDVDHTIKVGDSIRVY >gi|281306462|gb|ADEF01000004.1| GENE 151 183597 - 183974 378 125 aa, chain + ## HITS:1 COG:no KEGG:BF2228 NR:ns ## KEGG: BF2228 # Name: not_defined # Def: putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase # Organism: B.fragilis # Pathway: not_defined # 5 123 2 121 122 71 33.0 8e-12 MSDKQTLLIALGTNVNQKQNIQKAMDLLRKTWHDVLFTNLKWTKPIGMDTDLFYNCLAYA KVDEDLSQVQQILKNIEKACGNTEADRAHQKIQMDIDILMFGTRKLHEQDWQRSYIQKLI QEIDY >gi|281306462|gb|ADEF01000004.1| GENE 152 183984 - 185240 695 418 aa, chain + ## HITS:1 COG:no KEGG:PRU_1040 NR:ns ## KEGG: PRU_1040 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 9 418 4 410 410 498 58.0 1e-139 MRYCQCFYLFILSVIGTIIPSNACGQNFATYFCDSTLRIDYIFSGNAVHQQIAVDQLHSL PHWYGKRQRLSQVPMEGNGQIIVRDHQSKTVIYRNSFSTLFQEWLTYDEAKSSMKSFENV FLIPLPKDTVDITIRLNDNRRNPFVELTHTVAPSDILIRHIGEKHITPYQTILKAKDTTR CIHIAYLAEGYKSDEMDVFLHDAQKATDAIFSHEPYRSMKDKFNIIAVEAPSEESGTSIP SRGIWKNTALQSHFDTFYSARYLTTLRLKKVHDWLAGTPYEHIIILVNTPEYGGGGILNS YNLAMTHHPSFKPVVVHEFGHSFAGLADEYAYDFESIDMYPTDVEPWEPNITTKVNFDEK WKDLIGKNSAIGLFEGAGYAIKGVYRPALHCRMRDNETPDFCPVCQRAIQRVIDFYTQ >gi|281306462|gb|ADEF01000004.1| GENE 153 185257 - 185922 388 221 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879665|ref|ZP_06288396.1| ## NR: gi|282879665|ref|ZP_06288396.1| tetratricopeptide repeat protein [Prevotella timonensis CRIS 5C-B1] # 1 221 1 221 221 414 100.0 1e-114 MKQKFFILLWLIVSGSICHQMRGIVPSPSPTVDDTERLKMALAYFQSEKYQEALNLFHQL DKEYQLNPRYRAYIGLCHYQLWNYAEACNYLDSVSSALHVLAPAEQAVYYYANAESHFLL KEYQESITYFEMFLNVCHANEKADAYYRLGFCYLYQHHWLTAYEYFSSALSYYRQFGVTP QKRQRLVQLPKMLKGCKKHLEIVTETVQLNDSSHISIQRIL >gi|281306462|gb|ADEF01000004.1| GENE 154 185982 - 188519 1855 845 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 834 2 801 815 719 46 0.0 MTSQFSPKVSEVLAFSREEATRLASRSVGPEHLLLGMLREKNSPVQDVFARLKIHLPTVK AELENRLREEEMHQPLNTSELVLNEKASNILKLAVLEARIQHSETVDVHHLLLAILHDQV DNGAKQVLELNNMNYEDTFTYLQRMAKPTKSGLDLPDEEEDTSFSNHGESTNMGASSGAK TTLQNKRGNGKTPILDNFSTDLTAAALSSKLDPVIGREKEILRVVEILGRRKKNNPILIG EPGVGKSAIVEGLAQLIAMRKTSPVLFNKRLVSLDMTAIVAGTKYRGQFEERVRALLKEL EQNPDIIIFIDEIHTLIGAGSTPGSMDAANIMKPALARGTIQCIGATTLDEYRNSIEKDG ALERRFQKVLVEPTNQEETLQILHNIKDRYEDHHHVQYSDDALLACVKLTERYVTDRFFP DKAIDAMDEVGSKVHLQHAEVPAYITEKEKELSSVTTKKQEAVGNQNFELAASYRDKQTE LEIELEDLNNQWLNEKLEERTRITEKDVADVVSMMTGVPVQKMAEAEGIRLKGMADELKH QVIAQDMAIEKMVKAIQRNRIGLKDPNHPIGAFMFLGPTGVGKTYLAKKLAEFMFGSTDA LIRIDMSEFTESFNVSRLVGAPPGYVGYEEGGQLTEKVRRHPYSIILLDEIEKAHGNVFN MLLQVLDEGRLTDGNGRLVDFRNTVIIMTSNAGTRQLKDFGRGVGFNAGGSLGLSQNEKD KEYARAIIQKSLSKQFAPEFLNRLDEIITFDQLDLDAIKKIINIELTGLFKRMEDLGYRI KITEKAKEFVATKGYDVQYGARPLKRAIQTYIEDKIAELILSGELHLGDTISIEKSTAKE ELVLK >gi|281306462|gb|ADEF01000004.1| GENE 155 188475 - 188672 166 65 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKEPWLSLYDVVVCTVYCQEDILGKLNFFKQGTIEFGGSCELPTCSRLSVPLLENQFLFS GTLFD Prediction of potential genes in microbial genomes Time: Sat May 28 06:06:49 2011 Seq name: gi|281306336|gb|ADEF01000005.1| Prevotella timonensis CRIS 5C-B1 contig00090, whole genome shotgun sequence Length of sequence - 160040 bp Number of predicted genes - 130, with homology - 117 Number of transcription units - 73, operones - 30 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 312 - 524 68 ## gi|298373359|ref|ZP_06983348.1| CRISPR-associated protein Cas1 2 1 Op 2 . - CDS 550 - 1611 793 ## FP0489 mobilization protein BmgA - Prom 1636 - 1695 1.5 3 2 Tu 1 . - CDS 1724 - 2026 203 ## gi|288926542|ref|ZP_06420460.1| hypothetical protein HMPREF0649_01971 - Prom 2046 - 2105 2.8 4 3 Op 1 . - CDS 2387 - 2821 283 ## BT_3141 hypothetical protein 5 3 Op 2 . - CDS 2826 - 3818 529 ## PGN_0923 putative DNA primase - Prom 3948 - 4007 4.8 6 4 Tu 1 . - CDS 4014 - 5336 770 ## COG5545 Predicted P-loop ATPase and inactivated derivatives - Prom 5505 - 5564 2.6 + Prom 6139 - 6198 2.4 7 5 Tu 1 . + CDS 6219 - 6515 310 ## BF3280 hypothetical protein + Term 6550 - 6592 4.1 - Term 6534 - 6582 4.1 8 6 Op 1 . - CDS 6742 - 7272 402 ## gi|282879676|ref|ZP_06288406.1| putative lipoprotein 9 6 Op 2 . - CDS 7314 - 8102 334 ## BT_2779 3-demethylubiquinone-9 3-methyltransferase - Prom 8122 - 8181 6.5 - Term 8223 - 8259 4.0 10 7 Op 1 . - CDS 8286 - 8744 252 ## gi|288803245|ref|ZP_06408679.1| hypothetical protein HMPREF0660_01684 11 7 Op 2 . - CDS 8827 - 10533 1085 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 10564 - 10623 3.4 12 8 Op 1 . - CDS 10757 - 11794 519 ## PRU_1108 hypothetical protein 13 8 Op 2 . - CDS 11787 - 12413 288 ## PRU_1109 hypothetical protein - Prom 12442 - 12501 6.1 14 9 Tu 1 . - CDS 12852 - 13139 244 ## gi|282879682|ref|ZP_06288412.1| conserved domain protein - Prom 13221 - 13280 9.9 + Prom 12907 - 12966 5.7 15 10 Tu 1 . + CDS 13200 - 13451 131 ## gi|282879683|ref|ZP_06288413.1| hypothetical protein HMPREF9019_2158 + Prom 13484 - 13543 7.8 16 11 Op 1 . + CDS 13567 - 14847 908 ## COG1106 Predicted ATPases 17 11 Op 2 . + CDS 14849 - 15454 456 ## gi|282879685|ref|ZP_06288415.1| hypothetical protein HMPREF9019_2160 18 11 Op 3 . + CDS 15515 - 16951 826 ## ebA2414 hypothetical protein 19 11 Op 4 . + CDS 16948 - 18990 884 ## COG0433 Predicted ATPase + Term 19204 - 19235 -1.0 - Term 18998 - 19052 15.2 20 12 Op 1 . - CDS 19079 - 19366 180 ## COG3587 Restriction endonuclease 21 12 Op 2 . - CDS 19288 - 19509 80 ## - Prom 19619 - 19678 3.1 22 13 Tu 1 . - CDS 19765 - 20820 703 ## COG3039 Transposase and inactivated derivatives, IS5 family - Prom 20924 - 20983 5.2 23 14 Op 1 . - CDS 21015 - 22307 775 ## COG4973 Site-specific recombinase XerC 24 14 Op 2 . - CDS 22367 - 23596 796 ## BT_4022 integrase - Prom 23772 - 23831 5.4 - Term 23955 - 23990 -0.9 25 15 Tu 1 . - CDS 24015 - 24185 64 ## - Prom 24205 - 24264 1.8 26 16 Tu 1 . - CDS 24292 - 25863 1304 ## BDI_0813 hypothetical protein - Prom 25904 - 25963 8.1 + Prom 25929 - 25988 5.3 27 17 Op 1 . + CDS 26153 - 26830 542 ## PRU_1791 hypothetical protein 28 17 Op 2 . + CDS 26862 - 27458 401 ## PRU_1790 hypothetical protein 29 18 Tu 1 . - CDS 27462 - 29969 1717 ## PRU_1798 hypothetical protein - Prom 30203 - 30262 4.5 + Prom 30188 - 30247 5.6 30 19 Op 1 . + CDS 30267 - 30737 431 ## COG1267 Phosphatidylglycerophosphatase A and related proteins 31 19 Op 2 . + CDS 30725 - 31198 462 ## BT_1524 hypothetical protein 32 19 Op 3 . + CDS 31230 - 31868 721 ## COG0558 Phosphatidylglycerophosphate synthase 33 19 Op 4 . + CDS 31869 - 32705 354 ## BT_1522 putative aureobasidin A resistance protein + Prom 32720 - 32779 6.0 34 20 Tu 1 . + CDS 32833 - 33648 533 ## BF0266 hypothetical protein + Term 33759 - 33810 1.2 - Term 33917 - 33982 12.0 35 21 Tu 1 . - CDS 34071 - 36314 1690 ## BVU_1820 hypothetical protein - Prom 36445 - 36504 6.7 + Prom 36262 - 36321 5.3 36 22 Op 1 . + CDS 36527 - 36808 108 ## 37 22 Op 2 . + CDS 36832 - 38313 1623 ## COG0116 Predicted N6-adenine-specific DNA methylase 38 22 Op 3 . + CDS 38306 - 40465 1545 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 39 22 Op 4 . + CDS 40482 - 41750 1179 ## COG0151 Phosphoribosylamine-glycine ligase 40 23 Op 1 . + CDS 41908 - 42837 249 ## PRU_1808 hypothetical protein 41 23 Op 2 . + CDS 42822 - 43274 349 ## COG1238 Predicted membrane protein 42 23 Op 3 25/0.000 + CDS 43296 - 44123 616 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 43 23 Op 4 . + CDS 44128 - 44862 227 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 + Term 44928 - 44973 0.0 44 24 Tu 1 . - CDS 44985 - 45695 173 ## PROTEIN SUPPORTED gi|163781723|ref|ZP_02176723.1| 50S ribosomal protein L13 - Prom 45718 - 45777 2.3 45 25 Tu 1 . - CDS 45863 - 45949 84 ## - Prom 46037 - 46096 1.6 + Prom 46703 - 46762 6.8 46 26 Tu 1 . + CDS 46926 - 50252 2904 ## PRU_1810 hypothetical protein + Term 50269 - 50322 12.2 + Prom 50255 - 50314 4.6 47 27 Op 1 . + CDS 50343 - 50954 435 ## COG0726 Predicted xylanase/chitin deacetylase 48 27 Op 2 . + CDS 50932 - 51909 566 ## COG1600 Uncharacterized Fe-S protein 49 27 Op 3 . + CDS 51923 - 52207 230 ## gi|288924828|ref|ZP_06418765.1| hypothetical protein HMPREF0649_00276 + Term 52265 - 52324 10.1 - Term 52254 - 52306 8.1 50 28 Op 1 . - CDS 52346 - 53728 1442 ## COG1109 Phosphomannomutase 51 28 Op 2 . - CDS 53780 - 54418 568 ## PRU_0303 hypothetical protein - Prom 54439 - 54498 4.9 52 29 Tu 1 . - CDS 54535 - 55575 172 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B - Prom 55596 - 55655 3.4 53 30 Tu 1 . - CDS 55743 - 56654 977 ## PRU_0301 hypothetical protein - Prom 56723 - 56782 3.0 - Term 56830 - 56888 6.3 54 31 Op 1 . - CDS 56952 - 59330 1587 ## PRU_0300 OMP85 family outer membrane protein 55 31 Op 2 . - CDS 59308 - 63936 3379 ## PRU_0299 hypothetical protein - Prom 64044 - 64103 7.2 - Term 64114 - 64165 12.0 56 32 Op 1 . - CDS 64271 - 65278 584 ## PRU_0611 putative lipoprotein 57 32 Op 2 . - CDS 65298 - 67172 1486 ## COG0826 Collagenase and related proteases 58 32 Op 3 . - CDS 67206 - 68033 492 ## COG1897 Homoserine trans-succinylase - Prom 68094 - 68153 4.6 - Term 68711 - 68753 7.2 59 33 Tu 1 . - CDS 68962 - 69807 191 ## gi|282879724|ref|ZP_06288454.1| hypothetical protein HMPREF9019_2199 - Prom 69892 - 69951 4.0 - Term 69972 - 70032 13.0 60 34 Op 1 39/0.000 - CDS 70128 - 70994 1196 ## COG0074 Succinyl-CoA synthetase, alpha subunit 61 34 Op 2 . - CDS 71025 - 72173 1251 ## COG0045 Succinyl-CoA synthetase, beta subunit - Prom 72214 - 72273 7.9 + Prom 72176 - 72235 8.3 62 35 Tu 1 . + CDS 72409 - 75357 2460 ## PRU_2765 hypothetical protein + Term 75401 - 75435 -0.9 - Term 75168 - 75213 3.1 63 36 Op 1 . - CDS 75380 - 75991 534 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 64 36 Op 2 . - CDS 76025 - 76498 444 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 65 36 Op 3 22/0.000 - CDS 76510 - 77118 495 ## COG0193 Peptidyl-tRNA hydrolase 66 36 Op 4 . - CDS 77153 - 77803 562 ## PROTEIN SUPPORTED gi|212691832|ref|ZP_03299960.1| hypothetical protein BACDOR_01327 - Prom 77968 - 78027 9.0 + Prom 77857 - 77916 5.1 67 37 Op 1 . + CDS 78122 - 79126 941 ## COG0781 Transcription termination factor 68 37 Op 2 . + CDS 79152 - 79478 430 ## COG1862 Preprotein translocase subunit YajC 69 37 Op 3 . + CDS 79487 - 80470 756 ## PRU_0245 hypothetical protein 70 37 Op 4 . + CDS 80492 - 81076 620 ## COG0237 Dephospho-CoA kinase 71 37 Op 5 . + CDS 81097 - 81525 460 ## PRU_0243 hypothetical protein + Term 81612 - 81665 12.1 - Term 81599 - 81652 12.1 72 38 Tu 1 . - CDS 81703 - 82638 952 ## COG0530 Ca2+/Na+ antiporter - Prom 82662 - 82721 3.0 + Prom 83283 - 83342 6.3 73 39 Tu 1 . + CDS 83522 - 86113 2747 ## COG1193 Mismatch repair ATPase (MutS family) 74 40 Tu 1 . - CDS 86219 - 87229 653 ## COG0657 Esterase/lipase - Prom 87350 - 87409 3.6 - Term 87397 - 87435 3.0 75 41 Op 1 . - CDS 87473 - 89539 1699 ## COG4206 Outer membrane cobalamin receptor protein 76 41 Op 2 2/0.000 - CDS 89608 - 90258 468 ## COG1564 Thiamine pyrophosphokinase 77 41 Op 3 . - CDS 90255 - 90839 516 ## COG3201 Nicotinamide mononucleotide transporter - Term 90842 - 90890 9.5 78 41 Op 4 . - CDS 90907 - 93213 2589 ## BF0565 putative TonB-dependent transmembrane receptor protein + Prom 93802 - 93861 2.5 79 42 Tu 1 . + CDS 93887 - 94030 66 ## + Prom 94484 - 94543 2.0 80 43 Tu 1 . + CDS 94563 - 95411 789 ## COG0627 Predicted esterase + Term 95423 - 95449 -1.0 - Term 95410 - 95436 -1.0 81 44 Tu 1 . - CDS 95472 - 95900 374 ## PRU_2778 putative DNA-binding protein - Prom 95953 - 96012 4.8 82 45 Op 1 . + CDS 96499 - 97641 894 ## COG4804 Uncharacterized conserved protein 83 45 Op 2 . + CDS 97642 - 99702 1206 ## COG1401 GTPase subunit of restriction endonuclease 84 45 Op 3 . + CDS 99731 - 100753 771 ## COG3943 Virulence protein 85 45 Op 4 . + CDS 100758 - 103115 1625 ## BF2918 hypothetical protein + Prom 103178 - 103237 7.5 86 46 Tu 1 . + CDS 103258 - 105870 2230 ## COG1596 Periplasmic protein involved in polysaccharide export + Prom 105891 - 105950 4.4 87 47 Op 1 . + CDS 106103 - 106756 262 ## COG1216 Predicted glycosyltransferases 88 47 Op 2 . + CDS 106829 - 107881 648 ## PRU_0084 chain length determinant family protein + Term 107939 - 107976 0.7 89 48 Op 1 . + CDS 107978 - 109450 568 ## Dfer_0062 polysaccharide biosynthesis protein 90 48 Op 2 . + CDS 109447 - 110733 401 ## BVU_2394 hypothetical protein 91 48 Op 3 . + CDS 110767 - 111912 1014 ## COG3754 Lipopolysaccharide biosynthesis protein 92 49 Tu 1 . - CDS 113098 - 113238 64 ## + Prom 113519 - 113578 8.3 93 50 Op 1 11/0.000 + CDS 113679 - 114488 450 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 94 50 Op 2 1/0.000 + CDS 114569 - 115324 410 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 95 50 Op 3 . + CDS 115343 - 116215 554 ## COG3475 LPS biosynthesis protein + Term 116253 - 116296 -0.9 - Term 116656 - 116699 7.4 96 51 Op 1 . - CDS 116742 - 118580 1475 ## BT_4295 putative chitobiase 97 51 Op 2 . - CDS 118603 - 119640 887 ## BT_4269 hypothetical protein 98 51 Op 3 . - CDS 119666 - 121720 1964 ## BT_4268 hypothetical protein 99 51 Op 4 . - CDS 121743 - 124841 2747 ## BT_4298 hypothetical protein 100 51 Op 5 . - CDS 124872 - 126332 1208 ## BT_4299 hypothetical protein - Prom 126489 - 126548 7.7 + Prom 126570 - 126629 8.2 101 52 Tu 1 . + CDS 126722 - 127417 571 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis + Term 127528 - 127567 -1.0 102 53 Op 1 . - CDS 127611 - 128090 325 ## PRU_1338 putative lipoprotein 103 53 Op 2 . - CDS 128071 - 129639 840 ## PRU_1339 hypothetical protein - Prom 129812 - 129871 3.6 - Term 131232 - 131273 6.2 104 54 Tu 1 . - CDS 131288 - 131536 100 ## + Prom 131615 - 131674 3.8 105 55 Tu 1 . + CDS 131769 - 131978 127 ## + Term 132041 - 132072 4.5 + Prom 132728 - 132787 1.9 106 56 Tu 1 . + CDS 132894 - 133094 110 ## gi|282879772|ref|ZP_06288502.1| hypothetical protein HMPREF9019_2250 + Prom 134385 - 134444 4.1 107 57 Tu 1 . + CDS 134688 - 135695 598 ## PRU_1340 hypothetical protein - Term 135766 - 135811 7.1 108 58 Tu 1 . - CDS 135839 - 136345 490 ## COG0406 Fructose-2,6-bisphosphatase - Prom 136380 - 136439 9.5 109 59 Tu 1 . + CDS 136352 - 137122 710 ## PRU_1342 hypothetical protein + Prom 137133 - 137192 2.4 110 60 Tu 1 . + CDS 137248 - 138546 1125 ## COG0477 Permeases of the major facilitator superfamily + Prom 138558 - 138617 2.8 111 61 Tu 1 . + CDS 138753 - 139751 940 ## COG2152 Predicted glycosylase + Prom 139867 - 139926 3.1 112 62 Tu 1 . + CDS 139946 - 144490 3058 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 144606 - 144640 -0.9 - Term 144526 - 144574 -0.4 113 63 Op 1 . - CDS 144588 - 145229 780 ## COG0572 Uridine kinase 114 63 Op 2 . - CDS 145241 - 145828 383 ## COG3663 G:T/U mismatch-specific DNA glycosylase - Term 145994 - 146034 2.1 115 64 Op 1 . - CDS 146077 - 147108 1051 ## PRU_1345 endonuclease/exonuclease/phosphatase family protein 116 64 Op 2 . - CDS 147161 - 147298 56 ## - Prom 147320 - 147379 6.5 + Prom 147267 - 147326 5.9 117 65 Op 1 . + CDS 147355 - 149916 2594 ## BT_3560 hypothetical protein 118 65 Op 2 . + CDS 149931 - 150788 842 ## BT_3561 hypothetical protein 119 65 Op 3 . + CDS 150819 - 150950 71 ## 120 65 Op 4 . + CDS 150886 - 152316 1395 ## BT_3562 hypothetical protein + Prom 152335 - 152394 2.7 121 65 Op 5 . + CDS 152414 - 152665 375 ## PROTEIN SUPPORTED gi|60280046|gb|AAX16386.1| 50S ribosomal protein L31 type B + Term 152691 - 152748 6.9 122 66 Tu 1 . + CDS 152755 - 153678 678 ## COG1864 DNA/RNA endonuclease G, NUC1 - Term 153709 - 153749 9.3 123 67 Tu 1 . - CDS 153848 - 154375 446 ## gi|282879788|ref|ZP_06288518.1| putative lipoprotein + Prom 154482 - 154541 5.6 124 68 Op 1 1/0.000 + CDS 154678 - 155226 539 ## COG0386 Glutathione peroxidase + Prom 155333 - 155392 9.9 125 68 Op 2 . + CDS 155422 - 156369 708 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 156416 - 156459 12.6 - Term 156404 - 156447 12.6 126 69 Tu 1 . - CDS 156519 - 157742 1383 ## COG2195 Di- and tripeptidases - Prom 157918 - 157977 6.4 + Prom 157653 - 157712 2.6 127 70 Tu 1 . + CDS 157770 - 157892 57 ## + Term 157939 - 157987 -0.1 - Term 159036 - 159082 3.5 128 71 Tu 1 . - CDS 159175 - 159351 201 ## gi|282879792|ref|ZP_06288522.1| conserved hypothetical protein - Prom 159494 - 159553 8.4 + Prom 159246 - 159305 6.2 129 72 Tu 1 . + CDS 159397 - 159495 79 ## + Term 159568 - 159609 4.1 + Prom 159562 - 159621 4.9 130 73 Tu 1 . + CDS 159650 - 159766 75 ## Predicted protein(s) >gi|281306336|gb|ADEF01000005.1| GENE 1 312 - 524 68 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|298373359|ref|ZP_06983348.1| ## NR: gi|298373359|ref|ZP_06983348.1| CRISPR-associated protein Cas1 [Bacteroidetes oral taxon 274 str. F0058] # 1 70 1 70 300 139 98.0 8e-32 MQKEEYFIKNACYSVTKSYLCKQNNKRSLLGRKQRSQVARSFPNRYQFSCTNKVTSLFSI SCILRIILSC >gi|281306336|gb|ADEF01000005.1| GENE 2 550 - 1611 793 353 aa, chain - ## HITS:1 COG:no KEGG:FP0489 NR:ns ## KEGG: FP0489 # Name: bmgA # Def: mobilization protein BmgA # Organism: F.psychrophilum # Pathway: not_defined # 1 246 1 245 352 105 30.0 2e-21 MIGKCKAIAHGSTALDYIFREGKLGYRLAFHNLCSRDPKTIYEEMKVVSDYNSRCRNKFL RIEIGIAPQDERKLPVSELMRIAHLFAKRIGLDNHQWVAVTHKDTDNRHIHIIANRISLY GEVYDTTFVSNRAAKVAEEISREKGLTIAKEVKAERKHQKEKATPTREQTKQQVQKICYT LLDKYKVTGVTGHSMFLYELNKNGITIERMKNKQGKVYGLKFSYAGQSFKASEIGREFGY HSLQKNFETTNKEESRKPHLTVQEPTEKKEQSDTGYQLVPPSRSSISRDNDTSQVQNPIG AVADTIVSAADEAVEGLGDLITPSTQGNDLTEAAWQRKLRYQANRKKRRGRGI >gi|281306336|gb|ADEF01000005.1| GENE 3 1724 - 2026 203 100 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|288926542|ref|ZP_06420460.1| ## NR: gi|288926542|ref|ZP_06420460.1| hypothetical protein HMPREF0649_01971 [Prevotella buccae D17] # 1 100 1 100 143 162 94.0 5e-39 MNRCNKKIARWQQQNKEEQKMNKTEFIKVRCILEEKQRIKSKAESAGRKFSDYCREILLK GEVAAVPKMTDNEMEAICILQHTGRFYGQVSNLIKVKDER >gi|281306336|gb|ADEF01000005.1| GENE 4 2387 - 2821 283 144 aa, chain - ## HITS:1 COG:no KEGG:BT_3141 NR:ns ## KEGG: BT_3141 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 40 144 63 160 160 73 41.0 2e-12 MENKTKTTDKDFSWLLGVEDETEYESTPQKGTEVPEIERPTNKQDTENTAHSEPAQHTEN ATVQRRISARMRKETLEAYKQAYLVPTRLSNRKAVYLSRETQERADFIVRRLGDRGSNLS SFVENIVRLHLEEYGEDIEKWRRL >gi|281306336|gb|ADEF01000005.1| GENE 5 2826 - 3818 529 330 aa, chain - ## HITS:1 COG:no KEGG:PGN_0923 NR:ns ## KEGG: PGN_0923 # Name: not_defined # Def: putative DNA primase # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 5 299 2 281 295 167 36.0 6e-40 MKKEDLSRIKRYPIVEYLERKDIKPVRRTAAYALYCSPLREETHPSFKVDTEKNLWIDYG EGRGGSIIDLCIRMEGCMLSEAIRRLGQNASDNGTYSSRKDLVPNNLQPVMAANGARRLI EISDTLPPHLQEYLTKERCINLEKAIPFLKCISYEVKGQRYQAIGFANQSGGYELRDDNT FKGTIAPKDITPIFTDKITDKMQPICVFEGFIDFLSFLSIKKEITSVCLVLNSVSNVAKA IRHLNDRHLTFVCAFLDNDDAGRRAVQEFARAGFQVEDMSRYYKDFKDLNEFHVSRMRKQ EQQKAQKQAHISFTEQKKSKKSKQVKHKIR >gi|281306336|gb|ADEF01000005.1| GENE 6 4014 - 5336 770 440 aa, chain - ## HITS:1 COG:L109011 KEGG:ns NR:ns ## COG: L109011 COG5545 # Protein_GI_number: 15672499 # Func_class: R General function prediction only # Function: Predicted P-loop ATPase and inactivated derivatives # Organism: Lactococcus lactis # 189 378 204 393 480 68 29.0 4e-11 MKRNADKGNSVDENNTPKQRKTSSKNGEIETYLSSYYEFRYNTVLGSTEYRGKSDAHFLK VGRYEINTLRRELDNDVGIITSSDNLYSIIESSFSPRVNPIQEYFKGLPLRDIGNNRGNS DSCSHDSSGNNENNSCCDTSSFSLKVIPELASCVVVRNSDKWLPYLTKWLVAVVANAMDD RECRNHTCLVLTGEQGKFKTTFLDLLCPPALHGYSYTGKIYPQEKDTLTYIGQNLIVNID DQLKALNKRDENELKNLITCPMVKYRMPYDKYVEEHPHLASFVASVNGNDFLTDPTGSRR FLPFEVLSIDIERAKAISMDNVYAEAKALLKSGFRYWFDDDEIAELYRESEDFQVQTAEM ELLLRCFEKPTEDESYSLMTTTEILTYLGIYTHQPLVAKRMGEALKKAGYIKVSKRRNGG SPIYVYKIRENLALPTPSNL >gi|281306336|gb|ADEF01000005.1| GENE 7 6219 - 6515 310 98 aa, chain + ## HITS:1 COG:no KEGG:BF3280 NR:ns ## KEGG: BF3280 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 7 95 4 92 95 78 40.0 6e-14 MEQVRDLNMEADDMQVVLSAISGVSKRIKEVAQTHKPLFGGEHFLTGKEVCERLYISPRT LQDYRDRRIIPYTQFAGKILYKVSDLERLLEDSHKNFL >gi|281306336|gb|ADEF01000005.1| GENE 8 6742 - 7272 402 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879676|ref|ZP_06288406.1| ## NR: gi|282879676|ref|ZP_06288406.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 176 1 176 176 326 100.0 3e-88 MKKIFYSLLCIIGLSACSSENVVLDSLRVYDVANSTCKLSLSATETRPDFYLEKDAVPAT LSIELGKDGIAQCVLEDVKANCAVRNIYVNIVNQDDQIILVVYHNVLDALADCICKYDVS FKMSKLSAGNYKLKVYFARPNMKYEESDIAFNGLINLTLNKKERVVLKSELRSPEI >gi|281306336|gb|ADEF01000005.1| GENE 9 7314 - 8102 334 262 aa, chain - ## HITS:1 COG:no KEGG:BT_2779 NR:ns ## KEGG: BT_2779 # Name: not_defined # Def: 3-demethylubiquinone-9 3-methyltransferase # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 260 1 256 258 266 51.0 4e-70 MQARHLDRKRYFEDSAITSSLFYLPYIRKFHPIDSCSKILEIGCGEGGNLKPFANIGCRV FGVDMAQIRIEQARQFFSEEKLDGRFESGDFLECPTPSEDDKFDIAILHDVIEHVPDKIA FLSHIRKFLKEDGILFVAFPAWQMPFGGHQQICRNKIWSKVPFFHLIPNPLYRFILKRLA GEEEATIKELLYIKQCKCSIEKIEQVVKAEDLSIESRQLWFINPHYLQKFGLRPRKLCWS ISHIPFFRNFCSTSCFYLLKRI >gi|281306336|gb|ADEF01000005.1| GENE 10 8286 - 8744 252 152 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|288803245|ref|ZP_06408679.1| ## NR: gi|288803245|ref|ZP_06408679.1| hypothetical protein HMPREF0660_01684 [Prevotella melaninogenica D18] # 3 152 6 155 155 153 50.0 3e-36 MPSENAIAGNIKVSDVVTSDCKTSVSKTDTRPEHLTDFYSTETTLSLLMRNDNTVAAQFL DVMDNCAIGQLNVDMTCVENKIIIILYPDRDILTNCVCMYDVNFKIRNLFPGNYQLEIFQ TTTNKQTSSSNRIYHGTVTLDFNKTVRLAMTR >gi|281306336|gb|ADEF01000005.1| GENE 11 8827 - 10533 1085 568 aa, chain - ## HITS:1 COG:mll8140 KEGG:ns NR:ns ## COG: mll8140 COG1595 # Protein_GI_number: 13476734 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Mesorhizobium loti # 17 170 14 175 208 70 27.0 8e-12 MKVDVNIDACKQGEREALGNLYKAYSDRLKRICLHYVTDESTAEDILHDAFIIIFTSIKS LKDNSKLEGWMITIVRNLSLRFLQSTGKYDIPLSNLGIEVLSEEDEEEKNIELELLLSAI ELLPEGNREIFKLSVLDGLSHKEIGDLLGINPHSSSSQLARAKKTLRAILINYWMLFLLP ILIPVYIYFVTREKSVDTSDNRPTALDTHHNLPKRVQQKGAASQKVGQPWYSIPSSAIDN DRRILAEKTISTEKISSQIITDSVEFGQQTVPFHVDSLQKYLATGTFGVEDSMLRIPRIS EDKMMALNEDAKLNIGHKKKYPWTFNFGYSSDASGNTASNLNYLSVIDYANGGAAAKIYS WKDYIDYLDRNRMLMDSVENARLRQQAVNQFISADQSVAENVNHYRPQTYSLSLYKQLSP RWIFGTGLTYTRLRSEFENPFNKATLKRTQKIDYIGIPLRMTYRVWNKGRLNAYATGGVT FEIPVHSSFTKEFVVTSDSSFTMKGTIHPRYQWSVNAGLGVQYQIFKPFSFYLEPGLSYY LKNGCGIQTYRTEHPFMFSIPFGLRLTW >gi|281306336|gb|ADEF01000005.1| GENE 12 10757 - 11794 519 345 aa, chain - ## HITS:1 COG:no KEGG:PRU_1108 NR:ns ## KEGG: PRU_1108 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 15 344 1 330 330 348 53.0 1e-94 MSSWQNHSSDERIAMIQTVAQDHNIEDNAVEKDWWVTVVLKALFNTSCGKWLLFKGGTSL SKGWNLINRFSEDIDISIGRNFFEDVLNLPFAKCENNNQVKKLRKASRDYIHGTLSAELD AELLKMGVKGYTIMNETVTGEPPRPIDHDSDPTIIFVNYESILPSSMRLIDARVKIEISC LSMSEPYEQCEIRSLVFDKFPEEDDEIAASINTVTPSRTFLEKALLLSEELQKEEPRSLR MSRHLYDLDRLMDTEFGQKALNDGKLYKAIVEHRRRFYHLGYVDYDKDYPAKIDFIPQNR VMNAYRLDYESNMVDGYIYGEAKSFDELMKRMEKLLHDFRQIVIS >gi|281306336|gb|ADEF01000005.1| GENE 13 11787 - 12413 288 208 aa, chain - ## HITS:1 COG:no KEGG:PRU_1109 NR:ns ## KEGG: PRU_1109 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 16 208 9 201 201 200 49.0 3e-50 MLINKKEKKVVDILRNCIEKANTGTLFFNNSFPEYDDEYVGKILSDFVRQDLLLRLSRGI YLKAKKTKFGIVYPTTEEIAHAIAERDNAEILPTGSTALNMLGLSEQVTMTPIFLTSGSA RKIKCGNRILTFKRGVPKNFTLKGKVTRLLVQAMKAIGERNYNEEWESVISAILSKYPED ETMSDDLKVMPTWIRRNIIKILSKNNHE >gi|281306336|gb|ADEF01000005.1| GENE 14 12852 - 13139 244 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879682|ref|ZP_06288412.1| ## NR: gi|282879682|ref|ZP_06288412.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 95 1 95 95 181 100.0 2e-44 MKTNNNLKIRTNTANHRSYFDWGSKMQVIRKGNGEIAMTEGELVRYFGVTWKKLNYRLKT IMKSSNLHPEERVADEEEVVINGQLKGYAPLYRFL >gi|281306336|gb|ADEF01000005.1| GENE 15 13200 - 13451 131 83 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879683|ref|ZP_06288413.1| ## NR: gi|282879683|ref|ZP_06288413.1| hypothetical protein HMPREF9019_2158 [Prevotella timonensis CRIS 5C-B1] # 9 83 1 75 75 142 100.0 9e-33 MLPDYQLLMKFTLNFTPKNVKLGVFFFILVRIHTLHIYTWTHCWEQQTHKKSALLLKIGG FICFDVNLDKIITEEEEDVLMVN >gi|281306336|gb|ADEF01000005.1| GENE 16 13567 - 14847 908 426 aa, chain + ## HITS:1 COG:alr3406 KEGG:ns NR:ns ## COG: alr3406 COG1106 # Protein_GI_number: 17230898 # Func_class: R General function prediction only # Function: Predicted ATPases # Organism: Nostoc sp. PCC 7120 # 1 418 1 446 463 84 24.0 6e-16 MIRDFCVKNYLSIRDKQELSFLAKGPSSELVTEVADGVFLYKLGVLYGANASGKSNMLIA LNEVFRLLVLPKSDATQRINGSIPFTLTKNDPIEMHVSFYANGIRYDYDVSFNEKYILNE VLYYYPNKSKSLFYERSFVGENIQADVKFGTSLKLQIKTQESVRENTLNNHSVLSVCSKA ALKEDIAPFNILHSWIMDNYHDVDGDGEKGIVEILKDAYNTPTKRKFYNTMLQKADLNIL KYRPIIEDRFVPSEYRERIQKENIPEEMKEALLKPTTDSVAFVNHSINGDFDIPLKWQSK GTIKYIRILDTLYDMITSSHVYYLDELGEDLHNDLLYYYLNVFIFNSKKSQLIITSQETT LLSQDLINENRGVVWFVEKNRETASSEYARGDSFGLHKNLSLYNSYRIGRLGAKPELGSI FINLED >gi|281306336|gb|ADEF01000005.1| GENE 17 14849 - 15454 456 201 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879685|ref|ZP_06288415.1| ## NR: gi|282879685|ref|ZP_06288415.1| hypothetical protein HMPREF9019_2160 [Prevotella timonensis CRIS 5C-B1] # 1 201 1 201 201 387 100.0 1e-106 MGKQRQTALILGEGSTEFFYFKSLCDVFKRLTIKPDYPKHTNIKELDAKIAESVAMGYSQ IFCIIDMDTKDREPERSQYQKLKAKYAKPINKPKKGIYCEVEFFETHRCTELFFLYYFRY TSRPYDEQKSLLKDLNQCVEYRKTIDFFIKTKGLHGYFERNGGNLEKAVVNANRSIDEKQ LSGRDYTYSELGRLIERLGSV >gi|281306336|gb|ADEF01000005.1| GENE 18 15515 - 16951 826 478 aa, chain + ## HITS:1 COG:no KEGG:ebA2414 NR:ns ## KEGG: ebA2414 # Name: not_defined # Def: hypothetical protein # Organism: Azoarcus_EbN1 # Pathway: not_defined # 8 461 3 459 462 539 60.0 1e-151 MEDIIKESQKVLNNGGNIIKTRDDRELILLDKDGNIQNADSCGWLPENDGKINKSVFRTR IEPWLTSLFQSEHLSLLCGSGITNAISFLAGGSSSTTMAASSFTTYKNEIEEAAKKSAKA SGRDSGNIEDQIRTANDLLRGLRILNKNTEADSLEKELNDIISEFAKSILESEKAIATAA DDKRENAYSVLVNFFLSFASRTGNRERLNIFTTNYDRLIEVGAELAGIHLMDRFVGTMMP IFRSSRLNLDIHYNPPGIRGEPRYLEGVARLTKLHGSVDWVQNKDEIRRIGLPFGADDIA PHLNAPGLKGADPLKLMIYPNSSKDRETAEYPYVELFRDFAAAICRPNSTLVTYGYGFGD EHINRIIHDMLTIPSTHLVVISFDDPIGRILQFYYESAHYAQMSVLMGSNLGNITNLAND YLPKSAIDRTTIRMAELLQHRMGAASSASSTSANATSLTSSATSSTTSTSTSQSTLAK >gi|281306336|gb|ADEF01000005.1| GENE 19 16948 - 18990 884 680 aa, chain + ## HITS:1 COG:mlr1445 KEGG:ns NR:ns ## COG: mlr1445 COG0433 # Protein_GI_number: 13471466 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Mesorhizobium loti # 408 651 289 535 610 92 26.0 2e-18 MTTTPIEQLASLRVGTVEFISPDRIEVQLDIESPDSVALNTGTPRNFPRINGYVMIPVDL GFVVGQVSWITIQRSPYPKRSGFQDFGLIDLPFPLRKMELQPVGTLVATEKGYKFKRGLE TFPSVGDIVILPTETQLKSIIESGENRRVYIGNSPLLGNAKVMIDPDRLFSRHLAVLGNT GSGKSCSVAGLIRWSLESANISKTKKDIPVNSRFIVLDPNGEYSKAFTDKKDANIYSVNI EGGDDRKQLEVPLWFWNTDEWCGFTKASPKTHRTTIVHALKSVRSGVSSEGFTKEIELAN YIRVIIQAVEISVKEGSPFLRKPAFGFHNRLVKWSEDFIVEGDYDDELKDAINNLNTKIT TFKTNRTGSGFIDYTYSRQEVKELVELMGEVYLKAGGKEEEFIPTDEDSPIPFTGENFVR SIEANAEILCTTDYVVTLMPRIKALLSDVRVKKVIDDTSLELSDWLSEYIGSDGKESLTI IDLSLLPSDVTSIITAVIARMVFGAQQRYLKLNKVCLPTVLVMEEAHYFVKRYNDDAENT GPTTQCCKVFEKIAREGRKFGLGLVLSSQRPSELSPTVLSQCNSFLLHRISNDRDQELVH RLLPDNMQGILREMPSLPSQYVVLLGWASELPVMVKMRTLPEAQRPQSEDPDYWDVWTGT KERKIDWKSIANEWQNKKTE >gi|281306336|gb|ADEF01000005.1| GENE 20 19079 - 19366 180 95 aa, chain - ## HITS:1 COG:PM0699 KEGG:ns NR:ns ## COG: PM0699 COG3587 # Protein_GI_number: 15602564 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Pasteurella multocida # 3 88 952 1037 1043 78 48.0 4e-15 MAVYTKLPNGFYINTPVVHYNPDWAVIFHEGSDIKHLYFVAETKGYDKDNLQDYRRAESV KIECANRHFATISDSHVTYDVVKNYDEMWIIITKP >gi|281306336|gb|ADEF01000005.1| GENE 21 19288 - 19509 80 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNVKRNIIFALEDRTLGRERHGILQVLVVVDSQGVEMDFVISWNPVMRWLSILNCQMASI STRLSFTIILIGL >gi|281306336|gb|ADEF01000005.1| GENE 22 19765 - 20820 703 351 aa, chain - ## HITS:1 COG:NMA1199 KEGG:ns NR:ns ## COG: NMA1199 COG3039 # Protein_GI_number: 15794143 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Neisseria meningitidis Z2491 # 25 340 22 324 335 206 38.0 6e-53 MKQCPSSPSFADLIVGHRKVKQTFFFQIDQIIDWNPIRGLIEIAYTKGNRPTGRPSYDSL VLFKTELLRTWYGLSDGEVEEQVNDRLSFSRFVGLGLDDCAPDSTTVCRFRNILVEADLY DNVLQEINRQLELAGVLVKRGAIVDASITDSPRRPRGRKEYEVVEDRNEESGRDVAEKAM VKEIVKPNVDGEARWVKKIGKLHFGYKRHSVTDENGLVIAEETTPANESDIKHLEKPLEK AKLPQGTPVYADKGYDSTANKDVLKRMKLKSRIMHKGVRGRKLTEREQRVNVAISKTRYK VERTFGSIHRWFHGGIARYVGLAKTHAQHIMEAIAYNLYRTPGIIVSNSLK >gi|281306336|gb|ADEF01000005.1| GENE 23 21015 - 22307 775 430 aa, chain - ## HITS:1 COG:YPO3843 KEGG:ns NR:ns ## COG: YPO3843 COG4973 # Protein_GI_number: 16123978 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerC # Organism: Yersinia pestis # 168 388 68 282 303 62 23.0 2e-09 MRSTFKILFYINRQKTKADGNTAILCRITIDGKNTAINTGEECQPSEWNTKQGLTTNRKT NQRIKEFRDLVEKTYRDILVKDGVVSVELIKNRLQGIATNPTTLLAMSRAELQAVKESVG RSRAEGTYLNLFYSDRNLREFVENKGVQDIPIGAITEDLFEEYRFFLKKRGLKASTVNSN LCWLSRLIFRAVSKRIIRCNPFENAKYEKEEKKIRFLQKSDVMKLMAMKMNDREAELARL VFVFSCFTGLAISDMENLEYKHIQTAAEGQMYIRKERQKTKAEFIVPLHPIAEAIISHCQ KEPERSEVQQTVKEKDDHLVFHRNCSRSVMDTKLSIVGKACGIRQRLSFHMARHTFGTMS LSAGIPIESIAKMMGHASISSTQVYAQVTDNKISEDIDRLIAKQSAKEKETSEREGSQIC GFLEYYKPYK >gi|281306336|gb|ADEF01000005.1| GENE 24 22367 - 23596 796 409 aa, chain - ## HITS:1 COG:no KEGG:BT_4022 NR:ns ## KEGG: BT_4022 # Name: not_defined # Def: integrase # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 409 1 409 409 421 50.0 1e-116 MKTEKMKVLLYLKKSGLDKSGKAPIMGRITIGRSIAQFSCKISCNPDLWNPRESRMDGKS REAVEVNGRLENLLLSIQSAYQSLLARGCPFDATDVKEKFQGSVQTRCMLIERLDMLIKE KESHIGIDIRKESMAGYHSTRIRLLEFIQKKYKVSDLAFSQLTENFIHEFQQYFLGECGF QESSFYNVATHLKTVCRLAYREGVADGLLFDKVKISKGNKKLPKALDRGEFEKLKTLHFE DLEEEMETARDIFLFACYTGAAYCDLMELDKSHLVRDDEGSLWLKFNRQKTSVPCRVKLL PEAIRLMEKLHSDERETLLPFMGYATYQSYLKALRLRAGIPFPFTTHTARHTFATLITLE QGVPIETVSKMLGHSYVSMTERYAKVTPQKLFEEFDRFLFFTEDMQLAI >gi|281306336|gb|ADEF01000005.1| GENE 25 24015 - 24185 64 56 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLRTLREKQPQQHCVCKLGGMLYGLIINAELSLQSASQNSRENIQRQSWSQIREI >gi|281306336|gb|ADEF01000005.1| GENE 26 24292 - 25863 1304 523 aa, chain - ## HITS:1 COG:no KEGG:BDI_0813 NR:ns ## KEGG: BDI_0813 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 44 379 61 368 468 264 40.0 7e-69 MLCLFGLWTQAVYAQKPDSTASMVLPRPYVSDSVTAKKDYKIDITYQGLGFVAAGLLIKS RQHDFREMRNLFQKDYHESWDNYTQYAPLVATWGLHAAGVEGQSSWKRLAVSNAVSALIV AGITNSLKYTVRERRPDETAKNSFPSGHTATAFMAATILHKEYGQTQSPWYSVAGYSMAT ATAVGRILNNRHWVTDVLVGAGVGIIATDLGYFVTDLLMKGKGKKRSVLKAFSSNEQQNP SFLGITVDAGMGTEQLAVSHAAVQSSTSKNYQVDDHAFDLHLHLGTNVSVSMEGAYFLNN YIGVGGQLRATTIPVKATVDFNSDNYLSIEGVDKQITAPYMKLIGTEAYPMGLFDFSGGV YFSYPIFNRLRVGSKFLVGRRLVTDQHVYAVAQVDVDDLRAQINSIPDNNKLSFATPEIK ARLLKTLDSWGDGQQARVSELMSQESTRAMVYSTEASLTWAYRPGLSFKGYIGYDYSSPK YTFQTKHSLQQQGEPVELSHTHTFIDKIAMHQFHAGFGMFLSF >gi|281306336|gb|ADEF01000005.1| GENE 27 26153 - 26830 542 225 aa, chain + ## HITS:1 COG:no KEGG:PRU_1791 NR:ns ## KEGG: PRU_1791 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 28 202 53 227 243 234 59.0 2e-60 MRLQLILFSIFMLCCSCSRHKTEQETVTIDTIPMMVMQIQKCSKLYTAEYKVHKIITHDD KMKLNGSFMKKDFSINLPLGSRKIAIPMDATLKAYIDFADFNEDNVKRQGDKIEIILPDL HITLTSTRINHDEIKQYVALTRSRFSDEELSSYERQGREAIIKDIPSMGMMDMARESAAR TLIPMIEQMGFEESNITISFRKHYTLNDIKSLLDKTTIEHGNNAK >gi|281306336|gb|ADEF01000005.1| GENE 28 26862 - 27458 401 198 aa, chain + ## HITS:1 COG:no KEGG:PRU_1790 NR:ns ## KEGG: PRU_1790 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 19 187 25 194 197 188 53.0 8e-47 MTRLKIAIAIVVVVCLGIFVWKLFSSKNGFSLSPNNDINITPTQIQSIRDIGQWEFLAIN NEEIIDTVRHGFFGDAELVRIYYGTLRLGIDLQDTDKDFIRVQGDSILVQLPPIKLLDHQ FIDEARTTSFFEKGDWTAKDRDDMYQRAYEAMLERCLVEQNIKSAERNANQQFFRLMKAM GHENVIIRNTPYMQKPKK >gi|281306336|gb|ADEF01000005.1| GENE 29 27462 - 29969 1717 835 aa, chain - ## HITS:1 COG:no KEGG:PRU_1798 NR:ns ## KEGG: PRU_1798 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 4 835 26 882 882 998 56.0 0 MAMVLTANAQITGEIVDTDGYAIPFASAMYKGNHVATASDIEGKFSIPRHEGWVLTFSSV GFKSQTIKVDVHTPTYLKIVLKEDSKSLNEVVVKSKRGRYSRKNNPAVELMKRVIEAKKQ SHLDNYPYYQYNRYQKLTLSLNDVKPEDIESGRFGKSQWVLDQIETSPYNNKLVLPVSVD ETVTQHIYRKEPKSEKEIIKGQQSQGVNKLLQTGDALNVILKDVFQSVDIYDDYIRLLQY PFVSPIGRTAISFYRYYIEDTVYVDRDLCYHLQFIPNNQQDFGFRGELYVLADSSLHVKK CKLTMPKKSDVNFVENLHVDQEFTRLDNGEWVLTKDDMWAELSLTSFLSKALVVRNTRLH DYAFDELPNKLFKGRLKVRHEADAMVRDESFWNRYRAVELTKGESSMDAFVHRMEQSKNF KWLIIGVKALVENYVETSSSQRPSKFDLGPVNTLISSNFVDGLRFRLSGRTMAALNPHLF WNGYAAYGTKSKKAYYGTELTYSLNKKKNSPFEFPQRNLIFETAYDVMSPADKFLIHNKD NAFMAFKTQKVQQMYFYNRQKLSFVYETDWGFSVNSSLKAESNEVAGDLHFIRLTDGEEM NQIRTTELKFGVRYCPGQTFINTKQKRVPINLDSPEFTLSHTVGLKNFLGGQYRLNFTEL GMYKRQWLGSWGYVDGIINVGAQWDRVPFPLLIMPPVNLSFFEHKETFSLMRNMEFLNDR YAFWSISWDLNGKILNRIPLIKRLKWREYVAFKGMFGTVTDKNNPSLSKNQSQDNLFVFP EGSYIMDKKVPYMELVAGVHNVLKVFSIDFVHRFNYNDHPGVNKNGVRFGFMMSF >gi|281306336|gb|ADEF01000005.1| GENE 30 30267 - 30737 431 156 aa, chain + ## HITS:1 COG:HI1306 KEGG:ns NR:ns ## COG: HI1306 COG1267 # Protein_GI_number: 16273218 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphatase A and related proteins # Organism: Haemophilus influenzae # 10 154 18 160 163 77 36.0 1e-14 MNRPPLLAVVFGTGFGSGFWPWGPGTAGALLASLMWLSMIHFFSPTALFILTLALIVLGT IIGTWATNQLEPFWGPDPKRVVIDEMVGVWIPLLISPTNNLWFALGAFGLFRFFDILKPL GIRQLDQRQGGFWVMADDILAGIYSLIVLAIIQWAI >gi|281306336|gb|ADEF01000005.1| GENE 31 30725 - 31198 462 157 aa, chain + ## HITS:1 COG:no KEGG:BT_1524 NR:ns ## KEGG: BT_1524 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 5 140 5 153 154 106 41.0 3e-22 MGYLKTAMVTFGKAQVSAWIASIVDFSITVGLSQLLHLWYGYCTFTGALMGGVINCLINY KWVFHPDDVKKKSIATRYMIVWAGSIGLNTFGTLTLTELTGINFVVIKAIVAIAVAILWN YQLQKIFVFRSSNYIPLRKKMRRKRHHSDLSDAPTSE >gi|281306336|gb|ADEF01000005.1| GENE 32 31230 - 31868 721 212 aa, chain + ## HITS:1 COG:PAB1041 KEGG:ns NR:ns ## COG: PAB1041 COG0558 # Protein_GI_number: 14521776 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylglycerophosphate synthase # Organism: Pyrococcus abyssi # 22 210 20 186 186 84 35.0 1e-16 MKYRDYLQESIYKIINPVIHGMIKIGITPNMVTTIGFLGNVLATAMFILASEQATPEADY AMIGWGGAILIFSGLFDMMDGRLARLGNMSTAFGAFWDSTLDRYSELFSLFGLTLYLLNT VGTWAGVISFLALVGSIMVSYVRARAEGLDIECKVGLMQRPERVVVTSVVAILTGIFNSN GWLIGGMILIAVLANITAFWRVAHCYKLLKNQ >gi|281306336|gb|ADEF01000005.1| GENE 33 31869 - 32705 354 278 aa, chain + ## HITS:1 COG:no KEGG:BT_1522 NR:ns ## KEGG: BT_1522 # Name: not_defined # Def: putative aureobasidin A resistance protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 4 275 32 304 305 301 58.0 2e-80 MFSIYIVILYLALFAYKPTRKIALVLTPWAIFGCSYDCMRLLPNFEVNPIDIRGLYETEK QWFGIVTAAGTVTPNEFFALHHHTVADLLAGFFYLCWVPVPIGFSIYLYIKGDCKNYLRF STAFLLINFVGFAGYYIHPAAPPWYVMQYGFEPILHTLGNVAGLGRFDQLTGIPVFQALY GKNSNVFAAVPSLHAAYMLVTTIYAIISKQRKTTIGIFAFICVGIWFTAIYSAHHYVIDV LLGILTCFVGIGILEFVLLKIPTVQQFMKQYVQLIAPK >gi|281306336|gb|ADEF01000005.1| GENE 34 32833 - 33648 533 271 aa, chain + ## HITS:1 COG:no KEGG:BF0266 NR:ns ## KEGG: BF0266 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 26 243 25 232 248 74 25.0 4e-12 MDKRLFFILLMCTTFVTTWATTPEDNDKAQQWSIKAGIGTSAAETESSDNRTFYSSPDAS SNLFYLQGDYYLTPKLTLSGGVYFEQTGLLDNFSQDIGLLRVNTAGLTVGSKYYFLPKKW VVQAYAGAFAQTNFLNLKRTTGKKYYVSNNQYRGAGLDVNYDIQRPALSIVPQVGLDLRI FSSVSLCVDFNYQFGLWGHQRTDFRFNSGPLQGVTGSQTTSNMKPGISFGVKVDFPMRKV SSDDLGNLFEILFDILSGPRAQDRYQSPYLR >gi|281306336|gb|ADEF01000005.1| GENE 35 34071 - 36314 1690 747 aa, chain - ## HITS:1 COG:no KEGG:BVU_1820 NR:ns ## KEGG: BVU_1820 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 743 1 744 750 748 52.0 0 MLTIYLCIVIFLLCLAIFDLFVGVSNDAVNFLQSAVGAKVATFRTILIVASCGVILGAVM SSGMMDVARHGIMNPAQYSFHEVMVIFLAVMVTDVIVLDIFNTLGMPTSTTVSLVFELLG ATFMVATIKMIGDDSLAFSELLNTEKALQVIIAIFVSVAIAFVFGVVVQYITRVVFTFNY KKHSRYTIAIFGGIAFTALAYFIFMKGVGNSPYIPEDAQSWINGHIGTLLIYTFIGSAIV MQLMHLVGVNIFKFVVLMGTFALAMAFAGNDLVNFIGVPLAGLDSYQTYMAQSSGAAPTS FLMTSLIESAKTPPFYLLLAGLIMIVAMATSKKAHRVIKTSVDLSRQDEGDEMFGSSAAA RSIVRFTQNSNTYVSNIIPERVHGWLDNRFNQRSVTLDHGAAFDVVRAAVNLVLASLLIT IGTNYKLPLSTTYVTFMVAMGSSLADRAWSRESAVFRVTGVISVIGGWFITAGVAFVASA LVGLLMFYGGIVIQAAFMGLVVYRLFRNNTGKSVGDTDKDDSFRLMMRTQDSVILWDLLS KHVSRTQSYMANFAIEQYKMIIEGFVTDKPSLLRHAARDLHNEKTILLKYRRQELLALRK APMDIAIERNTWFHVGINASQQYIYVLRRMLDPIKEHVDNNFTPITPELVEEYQPIYRKV IDLISQTEKTIATGRFENYRQVLDEAEQFETELSSIRKQHIDRIQMAEGNETFQLSLVYL NLLQESEQLLTNMRHQLRAAKKFMEGQ >gi|281306336|gb|ADEF01000005.1| GENE 36 36527 - 36808 108 93 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSHANYTHTLRRTVEQLSTFTSLNSLRNSQRNRYPLPSSKALEVLLGSMWSCKYKEKWSA IHEKRSTNVIAGFFDIPFQKRTLQQRIKSHFSI >gi|281306336|gb|ADEF01000005.1| GENE 37 36832 - 38313 1623 493 aa, chain + ## HITS:1 COG:slr0064 KEGG:ns NR:ns ## COG: slr0064 COG0116 # Protein_GI_number: 16331495 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Synechocystis # 12 372 21 384 384 268 36.0 3e-71 MEFELIAKTFMGLEPVLAQELTQLGANNVQIGRRMVSFSGNQEMMYRANFQLHTAIRILK PIKHFKARSAEDVYEEVKHVDWSQYIEQGKTFSVDSVVYSEEFRNSRFVTYKVKDAIVDQ FRENTGTRPNISVSNPDIRLHIHIAEDDATLSLDSSGESLHRRGYRQESVEAPLNEVLAA GMIMMTGWKGETDFIDPMCGSGTLLIEAAMIARNMSPGIFRKEFAFEKWPDFNQELFDHI YNDDSQEREFEHHIYGYDIDMKAVNTARLNAKAAGFTKDITIEQADFKNFTQPSQPSIII TNPPYGERISTPNLLGTYKMIGERLKHEFMGNDTWILSYREECFEQIGLKPSIKIPVFNG SLECEFRKYAIFGGRMKDFRAEGGIVKTAEEKKAMAEKHRFKKNREFKKRLEENEENEIA DIRSFKFHSLERVQERDERKKGGNRRNDRSYDNDDMPAYKGKKRFDKDGRGRSFGKRGGK EHGRKNYQIDDYE >gi|281306336|gb|ADEF01000005.1| GENE 38 38306 - 40465 1545 719 aa, chain + ## HITS:1 COG:CC2154 KEGG:ns NR:ns ## COG: CC2154 COG1506 # Protein_GI_number: 16126393 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Caulobacter vibrioides # 151 703 164 718 738 328 33.0 2e-89 MNKTWFSFLTLIALFVGGQKVMGQKLFTLEELNFGGKNYRKFVPENRYTTWWGDELIRTD TNQCSVIDKKSGKETPLFTLEDIKKHATTNDANEIKDLYGVSFPYPNKSLVLLQYGTTRC LYNWKTHKTVWKGSTANEEISEWNAASKATSYIQSESHQLFIRTADGNDTQLTTDGSREI VYGQSVHRDEFGIHKGMFWAPNGQKLAFYRMDQSMVADYPQVNIFGRIAKCEPDKYPMAG ETSHKVTVLVYDLTTKKTVTLQAGDPTDRYFTNISWSPDSKTIYMFELNRDQNDCRLVSY DAQTGKKIAELYRETHDKYVEPQHSIAFLPWDNNLFIMQSQRDGYNHLYLYQSNGKLVKQ LTKGKWVVLDVIGFNTKDKSIVYTSTEKHALQTNTYAVNVKTGKRRLLDNGRGYHSPSLS PSGAFIVDKYSEPTVPRNIEIINTANGKRTQYFEAADPWKGYQVPTFTCGTIKAADGMTD LYYRMVKPANFDENKKYPLVLYVYGGPHAHNVDARWHYASRSWETYMAQKGYILLILDNR GSERRGRDFEQATFRQLGQIEMQDQMKGIEYVKTLPYVDADRIGVHGWSFGGFMTISLMT NYPETFKVGVAGGPVIDWKWYEVMYGERYMDTPQANPEGYSKTSLIPQAKNLKGKLQIIQ GTNDKTVVPQHCLSFIAECIKQGTQPDFFVYPGEPHNMRGHQSVHLHERITQYFEDYLK >gi|281306336|gb|ADEF01000005.1| GENE 39 40482 - 41750 1179 422 aa, chain + ## HITS:1 COG:ECs4928 KEGG:ns NR:ns ## COG: ECs4928 COG0151 # Protein_GI_number: 15834182 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Escherichia coli O157:H7 # 1 419 1 420 429 378 47.0 1e-104 MKILLLGSGGREHALGWKIAQSKRVTQLFIAPGNAGTSEVGTNVDIQVNDFDGIKDFICT QQIDMVVVGPEDPLVNGIYDALKNDPRTKDTVVIGPSKEGAKLEGSKDFAKAFMQRHHIP TARYHTFTGETLDEGLRFLETLEAPYVLKADGLCAGKGVLILPTLAEAQRELKEMLGGMF GKASARVVIEEYLSGIECSVFVLTDGKHYQILPEAKDYKRIGEGDTGLNTGGMGSVSPVP FADKDWMKKVEERIIQPTIKGLSEEGIDYKGFIFFGLINVKGEPMVIEYNCRMGDPETES VMLRLESDLVDLFEGIAEGNLDKRVVTFDKRAAICIMLVSGGYPQKYVKGYPISGLEETG DSIVFHSGTKRENNQIVTAGGRVLAVTSYGKNKEDALKKSFEIAQKIQFQDKYFRKDIGQ DI >gi|281306336|gb|ADEF01000005.1| GENE 40 41908 - 42837 249 309 aa, chain + ## HITS:1 COG:no KEGG:PRU_1808 NR:ns ## KEGG: PRU_1808 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 4 309 3 310 313 154 32.0 5e-36 MANRLQHKIACSRYAFPLTIVYACGIWLFGGLFQHQLWIPFILMLVTTVVMAELNNQHAL IRTYSRMLSCSFLIMSASTLPLFFDIESGIIQLCMALTYLYLFKAYQNKMAIGSVFNAFF FIGLASMWFVQTLFLLPLWWLALRFYIVGMSWRTFFASLIGVITPYWFLSGYYIYQDSFE LLIDHFKQLCTFGTLAHLNELTRIELITFGFISILGIIGFLYFITNSSKEKIRIRLLFAS FALMMISTIAFIILQPVHYPYLLPMLIVSVAPFIGHYLTFSGSRLSAITSLVIVTLTLII TAYQIWMHS >gi|281306336|gb|ADEF01000005.1| GENE 41 42822 - 43274 349 150 aa, chain + ## HITS:1 COG:MA3555 KEGG:ns NR:ns ## COG: MA3555 COG1238 # Protein_GI_number: 20092362 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Methanosarcina acetivorans str.C2A # 1 148 2 148 153 94 37.0 6e-20 MDAFIDLLVQYGCWGMFLASFLAGSVLPFSSEAVMMGLMAAGVNTLPLIIYGTIGNVLGS LLNYYIGTLGRFDWIEKYLHVKPEKLEKAQRLISRYGVWMGFFAFLPILGSAIAIVLGLV RSNIWLTTLAFTVGKVMRYLLIIYSMNLVL >gi|281306336|gb|ADEF01000005.1| GENE 42 43296 - 44123 616 275 aa, chain + ## HITS:1 COG:slr2043 KEGG:ns NR:ns ## COG: slr2043 COG0803 # Protein_GI_number: 16329702 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Synechocystis # 18 274 41 330 338 178 32.0 1e-44 MNKIIWIGILLLTLVGCEHAPQHKARQITVTIEPLRYFTEQIAGEHFEVNTMVPKGGNPE TYEPTPQQMIQLAKSDLYIKVGNIGFERIWMTKLKQNAPHTLIIDSSYGIEPVRTGQNIN DPHTWMSTKNAIQIARNIYQALAKIDNKNSSYYQENLDKLLQKIDTTDQQIRQLLAKKTS RAFLIYHPALTYFAHDYQLQQIPIEINGREPSASQLKETIQTAKARHVKTFFIQKEFASR QTLLISKSMGVDTTTINPLSAHWQEQMLLIASKIK >gi|281306336|gb|ADEF01000005.1| GENE 43 44128 - 44862 227 244 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 236 1 233 305 92 27 1e-17 MQPIIQLNNVFAAYDKKVVLKNINLTIDEHDFLGIIGPNGGGKTTLIRLILGLKKPMKGQ LLFYKEGKPVKHLTMGYLPQYNAIDPDFPISVEEVVLSGLSNQKKLFHPFTAKHHLMVSE TLEKMQLSKLRNRAIGTLSGGQLQRVLLARAIVSHPTVLVLDEPNTYIDRHFQTQMYEML HQIHRHCAILLVSHDIGAVLQNAQNIAYVNRKLDYHVASDLSTEDLQGCFHQHSLLDESW HKSL >gi|281306336|gb|ADEF01000005.1| GENE 44 44985 - 45695 173 236 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163781723|ref|ZP_02176723.1| 50S ribosomal protein L13 [Hydrogenivirga sp. 128-5-R1-1] # 34 229 37 212 228 71 30 3e-11 MITNVFPNPTDAARAHVERILNLIKAEDQDEYHIALSGGSTPALMFDLWAKEYSHLTPWK KLRFYWVDERCVAPDDAQSNYGMAYQHLLSKVPVPASHIYRIDGENEPEEECKRYSELVS KKTPLEDGLPVFDIVLLGAGDDGHTSSIFPGQEHLLTTSEIYAVGVHPESGQKRIALTGK PIMNAKHVIFFVTGEKKKSVVLAIKGVGNNGPAAYVAHHAKHAVEIFTDNAAADEG >gi|281306336|gb|ADEF01000005.1| GENE 45 45863 - 45949 84 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKMQNKTNIGMIGLAVMGENLTIVAYTV >gi|281306336|gb|ADEF01000005.1| GENE 46 46926 - 50252 2904 1108 aa, chain + ## HITS:1 COG:no KEGG:PRU_1810 NR:ns ## KEGG: PRU_1810 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 1104 1 1117 1121 1694 70.0 0 MKKYRLVDNVVGWIAFMIAAITYCLTVEPTASFWDCPEFISTGYKLEVGHPPGAPFFMLT ANLFSQFVSDPSKVALMINIMSALLGAAGVLFLFWTITHLTRKLILKDWSELTLGKLITI EASGMVGALIYCFCDTAWFSAVEGEVYAYSSAFTAVVFWLILKWEDHADEPHSDRWLLLI TYMTGLSIGVHLLNLLCIPAIVLVFVYRKFPNIEAKGSIVALIISFAVVAAVLYGVVPGI ITVGGWFELFFVNTLGMPFNTGVIVYILLLVSTVVWAIYETYVDQHTKRMNIAFLLSVAL LGIPFYGYGWKAVGIGVVVLAILWYALNYTQHVEKKKIPLISARIKNTILLGLLMLMIGY SSYALIVIRSAANPPMDQNSPEDIFTLGKYLSRDQYGDRPLFYGQAYTSQVKLDVQGNQC IPSMNEGAPVYARKEKASKDEKDSYFVVTHDSKYNYAQNMLFPRMYSSLDAQGYESWLGG VEGTQVPYDRCGESIMVKVPSQMENLRFFLSYQCNFMYWRYFMWNFSGRQNGMQGNGELE HGNWISGIPFIDNPRLGDQSKLPDELKNDKGHNVYYMLPLLLGVIGLFWQAWRGKRGIRQ FWVVFFLFFMTGLAIVIYLNQTPMQPRERDYAYAGSFYAFAIWCGIGVAAIVDLLKKYLK LNETLIASVAAVACLLVPIQMASQNWDDHDRSNRYTCRDFGQNYLMTLQDKGNPIIFTNG DNDTFPLWYNQDVEGVRTDARVCNLSYLQTDWYIDQMKRPAYDSPAVPITWPRLDYCSGT NEAVAIQPSLKNELKEYYRQYPEEAKKQFGEEPFELKNIIKYWMRSKDADRQVIPTDTVY VTIDKEAVKKSGMMMASDTIPDKMVISLAGKRALYKQDMMMLEMIAECGWTRPIYVATTV AARYYMNLGDNFVSEGLANRITPFTTNKPGVKNFDTEKTYNNLMNRYKFGGLEKPGLYID ETTMGMCMTHRRLFAQLVTELLKEGKTEQAKKALAKAEKVLPEYNVPHSWKSGSIELARA YALLGQTAKAKDICQKVWKNNKQYAQWYLSLDDFRFMASQNQCLLYFQLMMEVNKVTTLF DKNLAKKQLDELNRFYTIYAQKGGKPVE >gi|281306336|gb|ADEF01000005.1| GENE 47 50343 - 50954 435 203 aa, chain + ## HITS:1 COG:all4345 KEGG:ns NR:ns ## COG: all4345 COG0726 # Protein_GI_number: 17231837 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Nostoc sp. PCC 7120 # 28 201 108 286 305 123 40.0 3e-28 MFIEQPAKWLRWLYPNALWRMDKKVHAVYLTFDDGPVPESTPFILDTLAQYNVKATFFMV GENVLRYHDLYNRIVEEGHQVGNHTFNHMGSFKHWALTYGINTEKANELIHAHLFRPPHG WMRWSVYWWLSKRYKIVMWDLVTRDYSKWMTPEDVLKNVKRYARNGSIITFHDSMKSIDK LKYALPEALKWLKEQGYEFKTFD >gi|281306336|gb|ADEF01000005.1| GENE 48 50932 - 51909 566 325 aa, chain + ## HITS:1 COG:SMc00406 KEGG:ns NR:ns ## COG: SMc00406 COG1600 # Protein_GI_number: 15964079 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Sinorhizobium meliloti # 5 323 18 328 366 211 34.0 1e-54 MNSKLSTEIKQEALKLGFTRCGIAQAKAVDEWTATQYKQWIAEEKCASMDYMRNNIEKRL DPRMLMEGVKSIVCVALNYAPAQFMPEKEWQLAAYAYGQDYHYIVKNKLRQLAQHFGFHE ITPENSTTSNDDAIHYRVFCDSAPILERYWAVQAGLGWLGKHHQLIVPKAGSMFFLGELF LDIELSFDKPMESHCGNCRACIEACPSGAIQLDSSLDANKCLSYQTIENRGELAEGVAKD MGDMFYGCDRCLRACPWNRFSKPNDTPELQPKTELLEMTRDKWMNLSLENYQKLFKKSAV KRAKYEGLMRNIRAIASLSKNKNKE >gi|281306336|gb|ADEF01000005.1| GENE 49 51923 - 52207 230 94 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|288924828|ref|ZP_06418765.1| ## NR: gi|288924828|ref|ZP_06418765.1| hypothetical protein HMPREF0649_00276 [Prevotella buccae D17] # 8 89 3 84 84 83 48.0 5e-15 MSQEIPLNTIEKEVAIFFHHYALEILTKQHVDRSNKRQVKEALLEHYEQIYPAFSQTKVF ERCFQKAEHDAMVTAYRTNFSLLLDGYLPTIDNE >gi|281306336|gb|ADEF01000005.1| GENE 50 52346 - 53728 1442 460 aa, chain - ## HITS:1 COG:PH0923 KEGG:ns NR:ns ## COG: PH0923 COG1109 # Protein_GI_number: 14590777 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Pyrococcus horikoshii # 12 459 6 449 455 258 37.0 2e-68 MTLIKSISGIRGTIGGRSGDTLNPLDIVKFTSAYATFIRRSGKSDSQTIVVGRDARISGE MVKNIVCGTLMGMGYDVINIGLATTPTTELAVRMSQSAGGIIITASHNPRQWNALKLLNH EGEFLTKANGNEVLDIAEKEDFEYADVDHLGKYTEDNSYDQRHIDDVLGLKLVDLPAIKN AKFNVVVDSINSVGGIILPKLLDALGVQYTFLNGEPTGDFAHNPEPLAKNLGGIMSEMAS GKYDLGIVVDPDVDRLAFICEDGTMFGEEYTLVSVADYVLSHTPGNTVSNLSSTRALRDV TEKHGGKYVASAVGEVNVTTKMKEVNAVIGGEGNGGVIYPESHYGRDALVGIALFLSSLA HKGCQVSELRKSYPNYFMAKNRIDLTPETDISAVLDRIKEIYANEKVTDIDGVKIDFADK WVHLRASNTEPIIRVYSEAATQEEAEALGQKLMNIVYEMQ >gi|281306336|gb|ADEF01000005.1| GENE 51 53780 - 54418 568 212 aa, chain - ## HITS:1 COG:no KEGG:PRU_0303 NR:ns ## KEGG: PRU_0303 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 17 210 5 203 205 170 46.0 3e-41 MKKIVFSLITILSVCFFASCRDRQTYADQKEAERSAINKFIADSAVKVISETTFASQDYT TNVAQNEYVLLSSSGVYMQIRRKGTGEKIKNGETANVLCRFTERNLMTDSVQLSNQGPYY SAIVDKMMVRNTSGTFTASFVKGESLMALAYRSTEVPSGLLVPFSYIRLGRPAHEGDEIA RVRLIVPHSSNHSYARQSVYPCLYDITYQRGK >gi|281306336|gb|ADEF01000005.1| GENE 52 54535 - 55575 172 346 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 11 335 1 304 311 70 26 4e-11 MNIDILAPAALKLLQQLISDAQHIVICGHKSPDGDALGSSLAWCDYLANQCGKQATVVMP DAYPDFLQWLPNSHRVIRYDKHPEEVKELFEKAHLVFCLDFGATNRVDEMQTVLDACTAP RVMIDHHTNPDMETVLSLSETTACSTSELIFRLIWQLGGFELMSRDCAIAIYCGMMTDTG GFTYNSSRPEIFFIISQLLTKGFDKDKIYRNVFNNYSQWAIRLRGYIMFQKLNVFEDYHA SYFAISRQEMRDFHFIKGDAEGLVNMPLSIKGMKLSISLREDDRREQLVWVSLRSVDDFP CNEMAALYFNGGGHVNASGGRLHCSLSEAEEVVRQAIMHFEDLLKR >gi|281306336|gb|ADEF01000005.1| GENE 53 55743 - 56654 977 303 aa, chain - ## HITS:1 COG:no KEGG:PRU_0301 NR:ns ## KEGG: PRU_0301 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 303 1 313 313 528 78.0 1e-149 MKPTLLLLAAGMGSRYGGLKQLDGLGPNGETIMDYSIYDAIKAGFGKIVFVIRKDFEDDF RQKVLSKYEGHIPAEVCFQAMDKLPEGFTVPEGRQKPWGTNHAVMMAKGLIHEPFCVINC DDFYNRDAYMVMGKFLSELPEGSKNRYSMVGFRVGNTLSENGTVARGICSKDNDGHLTEV VERTEIMRVDGKVCYKDEEGKWVAVEDNTPVSMNMWGFTPDYFEYSDEYFKEFLSDAKNM ENLKAEFFIPLVVNNLIHEGTATVKVLDTTSKWFGVTYAADRQATVDRIQKLIEEGVYPN RLF >gi|281306336|gb|ADEF01000005.1| GENE 54 56952 - 59330 1587 792 aa, chain - ## HITS:1 COG:no KEGG:PRU_0300 NR:ns ## KEGG: PRU_0300 # Name: not_defined # Def: OMP85 family outer membrane protein # Organism: P.ruminicola # Pathway: not_defined # 16 792 19 787 787 754 47.0 0 MKYRKCNNFILLCALLSLIVTACSTTSAIPDGEQLFTGLKKIEFDDAEKSEHAEYTKSEM ESVLATAPTGAFLGSSYYRTPFPVRLWIWNALSPDTSAVSRWLTRAFGSRPKLLSQVNPA LRKSVGELQLKKLGYFHGKVDYEIVPQNHPKKAKVAYRVHMGPLWQLDSIRYLNFTPHAD SLIRTTHEEALIKKGSPFSVPALEAERQRISRLLRNNGYYYAKPTDASYLADTLQAPCKV QLRYQQADSLDEMVKRQWYIGQVNVNLRNEFTEELTDSLQQRIFTLHYHGSKAPLRPGVI YSALKLRPGQLYSLSNQETSNDYMHATGLFNYSSFKFTPRNHSPLCDTLDVDVDCVFDKR YSFYVNANAKGKTSNRFGPELVLGFTKLNAFRGAEKLDINLHGSYEWQTGHHAEGSSSKM NSYEYGGDISVIFPRMLTPKNLFWTAQRRSVRDSLRKDEGRRISKRRFYGVPVTILRMSN NILNRADYFKRHVISGDLTYQFNTSPQSYHEFSPLTLSYEYMTSQTDSFRVLLDKNPYLQ ISMRDQFVPKMSYSYQYTSPRGYRSPIAWKTTVSEAANILSLGYMAAGEKWNQKNKKMFK NPYAQFVKVETDFVKLWRIGENHSLVGHINAGVVYSYGNATEAPYYEQFYVGGANSVRAF NVRSIGPGKYRPENKRMSYVEQTGDVKFQTNLEFRPHLFGDIYGAIFIDAGNVWTLQKSD QRPGGKLRWKSLLTDMAVGTGCGIRYDMKLFVIRFDWGIAIHVPYHTERKGIYNIPSFKD GNSFHLAIGYPF >gi|281306336|gb|ADEF01000005.1| GENE 55 59308 - 63936 3379 1542 aa, chain - ## HITS:1 COG:no KEGG:PRU_0299 NR:ns ## KEGG: PRU_0299 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 1534 1 1542 1557 1293 41.0 0 MKKALIWIVSIIGIPALLLTLVAILLYIPPVQQWLVQQTTRYASKKLGLEVSIDKVRLAF PLDLSMENVLIIRPNDSLPQMKDTIGFAQRMVADVQLLPLFKKKVEIDELKFEGLHLNSS DFIAAAHVRGTIGQLALVSHGIDISGSVVNVDKLALEDAKLVVTLPDTVPEDTSQSKSIW KINVDDLQVRHTDVTVHFPGDTLQVRTYLGKAKVSKGFFDLGEGNYQVGRFDWTDGELNY DNKWKGRTKGIDYNHLALSNIEVGIDALQYHASKLKLNVRQMAFKERSGFDLQKLSGALA LDSTKLYMRQVKMRTSSSNLLADVDMDLNSFSNQNPGKLNLTLHASLGKNDLIRFMGSIP VDVRKQWPRSPLVIDGKVQGNLQRMNFHDLRVNLPTALKAKATGYVANLNDIDHLKADAM LNVSTGKLDFVKALMSPATRKRVTIPQNIDFKGHVAVNGQQYASTFKAQQGGGVLNANVQ LDASKQSYQAKLNASRLPLQHFLPNQGLHPFSGKIDLKGHGFDFLSPKTKLVAKAQIDKF SYDKYQLDATTADVTVKNGHAKGLIHSNNSFMRGDVKFDALTSSRHVQANLQTDLRHLDL HRLMDDSLVVGLKSKLNISTDFNNNYRIAGHIDDLTILDNGRRYHAEPINLNVLTRRDTT DVNLQTGDFQLKLQSGYGYQRLLSHSNGFMKEVQRQLKENLIDEPKLRAHLPNANFHLHT GNKNVLVNFMRKYGIELNQASVDFFSSPHEGLDGRLLIEKLLIDSIQLDTVNLTLNFNEE GTTYAARIENNAFNPQYVFKAIAQGNLSEKGTSLRTKLFDEQGRLGIALGLSAELEPNGI RTHLDSTKQVLGYKDFDVNQDNYLFIGKNKRISAQMSLRSKDGTGVQILSNDDHADVLQD VTFSVHKVTLQNILSAIPYVPNIAGTLNGDFHVIQTKDQLSISSSVGVQNMYYEKSPMGN LSSEFVYMPKSDGSHFIDGVLYSEGQEVAMVSGTYGKKDRLDAKLTLERLPLQLVNGFIP DRIIGLRGYADGDIMLTGTASKPDIDGEVFLDSSYIFSEPYGIEMRFANDPVKIAHSQLK FENFELFANNNSPLNIYGTFDFSNLDRMMLNIRMRAQNFEIIDARENPRSEAYGKAFVDF LGTMRGPVDNLRMRGVLNVLGTTDMTYVLRDSELSTDNQLDELVKFTNFKDSVVEVVQRP KLRGFDMSLATTIDEAAHIVCMLNADHTNYIDLQGGGELRMNYNPVDNFQLTGRYTLNTG EMKYSLPVIPLKTFDIQNGSYIEFSGDPMNPKLHITATEDIKATVNAGTGAGRVVDFDCG VKLSQNLDNPGIEFIINAPNDVTIQDELNTMTVEGRGKVAITMLVSGMYLTDGNMASFSM NNALSSYLESQINDIAGSAMRSMGLDLGMSIDNSTTATGGVHTDYNFRFSKRLWNNRLRV IVGGKVSSGEEIMADRDEYFFDNVELEYRLNQNASQYLRLFYNNNTYDWLEGLIGEYGVG FTWRRKLAHFKDIFRFKSDKKVFDPIQPQKKDSIPNEIQKMQ >gi|281306336|gb|ADEF01000005.1| GENE 56 64271 - 65278 584 335 aa, chain - ## HITS:1 COG:no KEGG:PRU_0611 NR:ns ## KEGG: PRU_0611 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 13 303 4 307 310 324 53.0 3e-87 MFHPSFYLGKIGLIGLLGVVMLSSCYHRPAQKSEALIPLSQDQVDSLHFYSSHHYTNNYN FIVKSDSLVLFEQQPEEVLSGLLVDTLVLKRHSHVVVADIRMLPTDSVDSVWVQLASDQH TFGWIHETQLLPSVVPDDPISQFISTFSDTHLLIFLIVISLIAIAYWMRRLFQEKAWIVH FKDIPSFYPTLLCIMVAIASTLYASIQNFAPDMWRHFYYHPTLNPFSVPGLLMVFLCMVW GMLIVGLAAVDDVRHRLPFTDAVMYLSGLLAVCAVNYIVFGLTTLYYIGYPLLLLYVVFA IRQYLHHARPQYVCGHCGQPIPSKGRCPHCGAYNA >gi|281306336|gb|ADEF01000005.1| GENE 57 65298 - 67172 1486 624 aa, chain - ## HITS:1 COG:ZydcP KEGG:ns NR:ns ## COG: ZydcP COG0826 # Protein_GI_number: 15801708 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Escherichia coli O157:H7 EDL933 # 4 620 22 632 667 396 38.0 1e-110 MRTLELLAPAKNLECGKAAIDHGADAVYIGAMKFGARASVGNDIDDIRDLCLYAHQFGAK VYVTVNTIIYETELDDTKNLLRALCQAKVDALLVQDMAILQLLPSDGSCVPALHASTQTD NRTAEKVAWLQSIGFERAVLARELSLQEIREIHQQVPEMQLEAFVHGALCVSYSGLCYAS QHCFHRSANRGTCAQFCRMKFDLIDANGQEIVHQRHLLSLKDLSQIDELEDLADAGVCSF KIEGRLKDIDYVKNVVAAYSQRLNKMIERCSSDYQRASIGEVSYSFTPNLKKTFNRGYTN YFLHQRQPDIYSPLTPKALGEYVGKVKELSHGSFNVAGTASFANGDGLCFINDRGELEGF RVNRAKGNRLYPLKMPTQLKSGMALYRNNDEAFNKILSGKTAERKIPISLSLSMSDHGLM LKASGKGLRAVKEVVEIEAQLAQKPQRDNILRQLAKLGNTAYVAAHIELDEEVVRYFIPS SVLATLRRQVIARLEIEQSVPSAATKTIVHNKARLTWQPEYQKFPYIYNISNSVAKSFYK RQGLTTIEDAYEVNPQSKPQSTAQHAVLIMQCRHCLRYSLGFCVRKGGKKPTWKEPLRLR LADGKMFRLEFKCDECQMNVYADE >gi|281306336|gb|ADEF01000005.1| GENE 58 67206 - 68033 492 275 aa, chain - ## HITS:1 COG:BH2280 KEGG:ns NR:ns ## COG: BH2280 COG1897 # Protein_GI_number: 15614843 # Func_class: E Amino acid transport and metabolism # Function: Homoserine trans-succinylase # Organism: Bacillus halodurans # 4 274 23 293 303 281 46.0 1e-75 MVDVADFREQHLHTAPIKIAVLNLMPTKLQTETDILRLLSASPLDIEVAWMRLRSHTPTH VPAAHMDAYYHYFDELSSQSFDGLIVTGAPVEHLDFEEVDYWDELTQIFSWARTSLKSTL YICWAAQAGLYFHEGIHKYALPKKMFGIFPQRVLHPEVPIFRGFDDVFCMPHSRHTEIRK ADIVHCHQLVLLVESEESGVSICMTKGGKEFFITGHLEYAPRTLDQEYLRDLGKRNDVEL PKHYYLDDDPAKRPVVTWRAHAHLLFMNWINEYLR >gi|281306336|gb|ADEF01000005.1| GENE 59 68962 - 69807 191 281 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879724|ref|ZP_06288454.1| ## NR: gi|282879724|ref|ZP_06288454.1| hypothetical protein HMPREF9019_2199 [Prevotella timonensis CRIS 5C-B1] # 1 281 24 304 304 565 100.0 1e-159 MKSRFLFICSMFVIFTLNLYAQNSLLFKEDMMYTNVTVSHNGNSRSVPALIDTGCSVCLI DSTYAVDSCNVIVTGSNATIGNIADKRIKSFDFNIDSVSIAGISYPKVRCFVVDLAGKFL HLAPKFILGGDFLKKEIWCFDLNTRMMKRSDVPKKGSSIRIKWKNHDDYRDVGLNSIYFK GKIEGKKTRIFFDTGSRRNNLPKTFGIKATREIEGEKADIANKLIMMKGGLCEGVSMELS QNRYLLDFILTNDQDPCVNASFLFGKSFILDYSHKTLHILR >gi|281306336|gb|ADEF01000005.1| GENE 60 70128 - 70994 1196 288 aa, chain - ## HITS:1 COG:PM0281 KEGG:ns NR:ns ## COG: PM0281 COG0074 # Protein_GI_number: 15602146 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Pasteurella multocida # 1 285 1 285 289 330 62.0 2e-90 MSILINHDTKLIVQGITGRDGSFHATKMKEYGTNVVGGTSPGKAGQEVAGISVFNTVKDA VKATGANTSVIFVPAAFAKDAMLEAADAGIQLIICITEGVPTLDVVEAYRYISDKGAKLI GPNCPGLISPEESMVGIMPTNIFKKGHTGVISRSGTLTYQVVADLTAAGFGQSTAVGVGG DPIVGLYFQDLLEMFQNDPETDCIALIGEIGGDAEERAADYIKQHVTKPVVAFISGREAP KGKQMGHAGAIISSGSGTAAEKIAAFEAAGVPVARETCEIPALLKERM >gi|281306336|gb|ADEF01000005.1| GENE 61 71025 - 72173 1251 382 aa, chain - ## HITS:1 COG:BH2470 KEGG:ns NR:ns ## COG: BH2470 COG0045 # Protein_GI_number: 15615033 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Bacillus halodurans # 1 377 1 386 386 343 48.0 3e-94 MKVHEYQAKALFAQYHLPVDKSVLCRTVDEAVSAYQSLGSERAVVKAQVHTGGRGKAGGV KVAKGEEQLKEYASQILGMDIKGFTVDRILVGEAIDIASEYYVSIVIDRKVKSAILMLSR EGGMDIESVAKNTPEKIHKIPIDPLIGMPDYLAREAAFCLFDDKALVKQAVPVFQNLYRL FKEKDASLAEINPLVVTKSGEVKAIDAKMTFDNNALYRHPDVFELFEPTAEERKEQDAKD KGFSYVNLGGEIGCMVNGAGLAMATMDMIKLYGGNPANFLDIGGSSNPTKIVEAMKLLLS DSHVRVVLINIFGGITRCDDVAKGLIEAFKMLDTDMPIVIRLTGTNEAEGRELLKGTKFH VAKTMSEAGKKAVELAQQCMNK >gi|281306336|gb|ADEF01000005.1| GENE 62 72409 - 75357 2460 982 aa, chain + ## HITS:1 COG:no KEGG:PRU_2765 NR:ns ## KEGG: PRU_2765 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 6 946 8 943 967 893 50.0 0 MKRTLFLLLILFIISIAAIGQERKVTGTLKDKDTGNPMTQTTIQLLKLDSTFVLGTLSNE QGKFILTVPKNGKYILKISSVGHKVLFKNFQLSQDKNLDLGIINMQTDAVLLKGATITGQ AMKVVVKEDTFIYNASAYRTPDGAVAEELVKRIPGAQVDDDGKITINGKEVKKILVDGKE FMTGDTKTAMKNLPTSVIEQIRTFDEKSDLSKVTGIDDGNEQTVLDFGLKKGANKGWMSN VDLALGTKTRYAERLMAAYFKDNLRIMGFGNANNSNDMGFGGRGGGFGRNRNGLNARKMT GFNINYEEKDKLKLNGSIRWNHSDDDVATRSSIENFVSKTGAFSNNINQSYNRRNSWNAN MRLEWRPDTMTNIMFRPRLSYTENDGRSWRYSASFQDDPYLYVTDPLALESLDELAEKNL VVNKRSLQAVNYGKNKQLGGALQINRKFGQKGRNATLRADAYYTENDNTNLSTNNVHLYK IKDALGNDSTYQTNRYNLTPTKNWNYSVQATYSEPLWKATFLQLSYKFNYSYYKSDRSTY DFSNLGESFFQDITPTYRNWDSYLSRLEKPYETYENRELSRFSEYQNYTHDLELMFRMIR EKYHFNIGMMLQPQKSHFIQHYQSINADTTRTVNNLTPTLGFRYRFSKVSNLKVDYRGYT SQPAMTDMLDITDDSDPLNITKGNPGLKPSFTNNLRATYNNYIKKYQQSVMTFLNYQTTS NSISSKVTYDETTGGRTVRPENINGNWNINGGLMYNRSIDTTGIWNINTWTQVRYNNRVG YLSLNNKADSEKKTTRTLGLTERLAMSFRNDWLEVELDGMVNYDHTRNQLQSRNNLDTWR YSYGLNVNITAPWGTNLSTDIHQNSRRGFNDQSLNTNELVWNAQISHSFLKKRNLILSLQ FYDMLNNQSNFTRSIDAIRRSDTEYNSINSYAMLHVIYRLNLFGGKQARQEMNRNDPRHG GLQHGRGSWRDQRRGHWNGGRY >gi|281306336|gb|ADEF01000005.1| GENE 63 75380 - 75991 534 203 aa, chain - ## HITS:1 COG:SPy0028 KEGG:ns NR:ns ## COG: SPy0028 COG0299 # Protein_GI_number: 15674272 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Streptococcus pyogenes M1 GAS # 16 201 2 180 184 119 33.0 6e-27 MKATSSLNALHARPHRVAIFVSGNGTNCENIIRYFAQSTTIQISLVLSNKSDAYALTRAK RLGVPTIIVPKKDFNDASILLPILQSNDIDFIVLAGFLLMIPNFLIAAFPKRMINIHPAL LPKFGGKGMYGHHVHKAVKAAGETETGFTVHWVSDVCDGGEIIAQYRTPLDSTDIVEDIA EKEHQLEMKYFPSVIEKVITEAF >gi|281306336|gb|ADEF01000005.1| GENE 64 76025 - 76498 444 157 aa, chain - ## HITS:1 COG:Cgl2072 KEGG:ns NR:ns ## COG: Cgl2072 COG1188 # Protein_GI_number: 19553322 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Corynebacterium glutamicum # 20 136 10 122 126 81 37.0 5e-16 MTDNAAKALTLRVKDTGSARIDKWLWAARIFKSRSIAVDACKNNRITINGVNVKPSHIIK SGVQIDVRKPPVVYSFKVLKTIEQRVGAKFISEIYENVTDPKQYELLEMSRISGFVNRAR GTGRPTKKDRRKMDEFIEPALFGFGDIDDWDHEDDDE >gi|281306336|gb|ADEF01000005.1| GENE 65 76510 - 77118 495 202 aa, chain - ## HITS:1 COG:slr0922 KEGG:ns NR:ns ## COG: slr0922 COG0193 # Protein_GI_number: 16331675 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Synechocystis # 5 185 5 188 194 146 43.0 3e-35 MNKYLICGLGNPGSEYADTRHNTGFIVLDALAKASNIVFEDKRYGYVAETSIKGRKVILL KPTTFMNLSGNAVRYWLNKENIEQHNLLVISDDISIPLGEFRLKASGSNGGHNGLGHIQQ LIGQNYPRLRMGIGSDFQRGGQVDWVLGRFSSEEVKILQPTIDIALELIKSFVLAGINIT MNQFNQLGKHTSSSQSPIEKTD >gi|281306336|gb|ADEF01000005.1| GENE 66 77153 - 77803 562 216 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212691832|ref|ZP_03299960.1| hypothetical protein BACDOR_01327 [Bacteroides dorei DSM 17855] # 1 195 1 196 198 221 55 2e-56 MKEINVSGQKREDLGKKASKHLRKEGLVPCNLYGEQKEDGKPVALAFAAPMSELRKIVYT PHIYVINLNIDGEHHTAILKELQFHPVTDALLHVDFYAVNDQKPITIGIPVKLVGLAQGV RDGGRMNLSVRKINVTAPYQQIPEHLDIDVTKLRIGKSIKVGQLSFDGLTMATSKDVVVC SIKMTRSATVSSDTSDEAEEEGGEESAAEGEEKAEA >gi|281306336|gb|ADEF01000005.1| GENE 67 78122 - 79126 941 334 aa, chain + ## HITS:1 COG:TM1765 KEGG:ns NR:ns ## COG: TM1765 COG0781 # Protein_GI_number: 15644510 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Thermotoga maritima # 196 296 32 132 142 63 35.0 7e-10 MINRELIRIKIVQLTYAYYQNGNKNIDSAEKELLFCLSKAYDLYNYLLELIVAITHEERH RVEIATQKANREGLEAPSQKFAFNKFAVQLEENKMLNTFLEEQKLSWDNDVEFIRKMCTQ IESSSIYQEYMESSDDSYEADREVWRKLYKQLIQENSDIDALLEEKSLYWNDDKEVVDTF VLKTIKRFDAANKSEQELLPEYRDEEDREFARKLFRATILNADTYQRYMSETSHNWDFSR LAYMDVVIMQIAIAEMLTFPNIPISVTINEYVNLAKLYSTPKSGGYINGMLDAIARYLVE TGKLLKALPEPKQRRSTNRVQRNSESNQTNDELQ >gi|281306336|gb|ADEF01000005.1| GENE 68 79152 - 79478 430 108 aa, chain + ## HITS:1 COG:BH1229 KEGG:ns NR:ns ## COG: BH1229 COG1862 # Protein_GI_number: 15613792 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Bacillus halodurans # 16 76 3 63 88 63 44.0 1e-10 MTTLVLAAQAAGGGVGGSGMLIFMVAMLAIMWVFMIRPQQKKQKEIKKFQNALQEGSKVI VSGGIYGTVKRIDLTTNKVDVEIARGVVIQVDKNFLYADTASQTTTNA >gi|281306336|gb|ADEF01000005.1| GENE 69 79487 - 80470 756 327 aa, chain + ## HITS:1 COG:no KEGG:PRU_0245 NR:ns ## KEGG: PRU_0245 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 325 1 325 329 291 43.0 2e-77 MYSEIKRISSLIRNFLFSIVNKEFLIFLFFLLLSGAFWLSMTLDETYEKEISVPIRLVNV PKNTIITTEMNDTVVMTVRDKGFAFIGYLNSNRFRTINLNFSTYANNKTGQGMVPMTDVQ NILYQRLSNSSKIVNLKPEQLKFYFNFGRSKQVPVRMDGKILPAKNYYLARIKFWPEKVT VYAQKNLLDSIRYIETEKLHFTNFADTVIEEVNLSKMIGVKTVPAKVKIGLFPDILTEES MEVPIVAINMPPGKRLRTFPSKVRVLFNIGSHAFRKLHEDQFQVVVDYHELSQHTSEKGT LHLRTFPIEVRQARLEIKEVDYLIEQQ >gi|281306336|gb|ADEF01000005.1| GENE 70 80492 - 81076 620 194 aa, chain + ## HITS:1 COG:BS_ytaG KEGG:ns NR:ns ## COG: BS_ytaG COG0237 # Protein_GI_number: 16079958 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Bacillus subtilis # 7 173 4 178 197 86 31.0 3e-17 MGKKKKVIAITGGIGSGKSYVAQLLAKRGITVYDCDAAAKRLMQQDAVLQEGLKKLIGAD VYQGNQLQKSVVTKFLLASEEHQQAIQQLVHPAVATDFLHSPYNWIESAILFEAHFDQLI HPDIIISIIAPLQTRVQRVMQRDQLTEAQAMDWIGKQWPQEELVKRSTFTINNDDDTNLD QQIDCIFKQIDFHI >gi|281306336|gb|ADEF01000005.1| GENE 71 81097 - 81525 460 142 aa, chain + ## HITS:1 COG:no KEGG:PRU_0243 NR:ns ## KEGG: PRU_0243 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 2 139 3 138 138 151 57.0 7e-36 METILSIAGKPGLYKMVSRGKTNLIVESLDDKRRRMPVFSSDRVTSLSDIAMYTDADDVE LWKVLKSVGEIENAKPVSFNYKKAKGKELREYFAKVLPSFDEDRVHDSDIKKLLQWYDIL VQNELTNFEELLARKESDEEEK >gi|281306336|gb|ADEF01000005.1| GENE 72 81703 - 82638 952 311 aa, chain - ## HITS:1 COG:BH0465 KEGG:ns NR:ns ## COG: BH0465 COG0530 # Protein_GI_number: 15613028 # Func_class: P Inorganic ion transport and metabolism # Function: Ca2+/Na+ antiporter # Organism: Bacillus halodurans # 18 307 16 315 318 192 39.0 5e-49 MLLNIIWMIAGIALVLWGADRLTDGAVAIAERMHISQMVIGLTIVAMGTSMPEFFVSFMS ALKDTPDMAVGNVVGSNIFNTLLIVGCAALVTPIMILPATVKKDIPFAMVASVALLLMCL DGNISRIDAMVLLGLFAVFMYFTLKGAKENEQSMQQTSAKSSKSFMSVVWIVVGLVCLVF GSNLFVDATTVIARQLGVSDAVIGLTIIAGGTSFPELATSVVSARKGQSGIAIGNVLGSN VFNILLILGVTGVMSPMTLQGITTVDLTMLVVSMVMLWLFSFTKYTLARWEGALLTIVFI GYISYLVMGVL >gi|281306336|gb|ADEF01000005.1| GENE 73 83522 - 86113 2747 863 aa, chain + ## HITS:1 COG:BH3106 KEGG:ns NR:ns ## COG: BH3106 COG1193 # Protein_GI_number: 15615668 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Bacillus halodurans # 11 863 8 784 785 349 29.0 1e-95 MIYPHNFESKISFDQIRAMLKNACLSTMGQEQVDKMTYSTRIEEISQWLQQICELQRVME EEEQFPLQYFFDMRTALARIRLENTHLEEEELFDLRRSLDTIFRMVNLLRQGEDGENLSY EALNGEDTDTAPMTYRYPVLSKLTEKVTLFPQILQRIDQILDKLGHIRDNATPALAQIRM ELKRAEGSVSRTLNSILRTAQSDGLVDQDVAPTLRDGRLVIPIAPGMKRKIKGIVHDESA TGRTVFIEPTEVVEANNRIRELETEERKEVIRILTAVTQSIRPRIPQLLQAYRMLGNIEF IYAKAQLAKQTKAIAPTIEAQPLIDWIGAVHPLLRQSLAKQGKKVVPLDITLTAAKRILI ISGPNAGGKSVCLKTACLLQYMLQCGLCIPVGERSKAGVFEHIMIDIGDEQSIENDLSTY SSHLLNMKNMMKTANDRTLLLIDEFGTGTEPQIGGAIAEAVLQQFCDKKAWAIITTHYQN LKHFADSHPMVVNGAMLYDRHEMQALFQLAIGQPGSSFAIEISRKIGLPEEVIRQASEIV GTDYIQSDKYLQDIVRDKRYWENKRQTVRLLEKELERKTAQYEQDIKDLEQERKLIVKRA KQQADDLLQESNKRIENAIREIREQQAEKEATKKIRQELKTFEKGLQQETTNAKSGVMSD EDFAKKVAQMKQRKERREKRKSDREAQKQKEEQANKLVAATKKSADTFAVGDEVRMIGLT TVGTIVQIEGKMTTVVFGDMRTKVRSTRLEHATQTLASPSREERLGAVKVSKTTRDTIDT HRKAFKQELDVRGMRGDEALNAVQYYIDDAILMGVSQVRILHGKGNGILRQLIRDYLASV PNVVQYRDEHVQFGGAGITVVEL >gi|281306336|gb|ADEF01000005.1| GENE 74 86219 - 87229 653 336 aa, chain - ## HITS:1 COG:mll7218 KEGG:ns NR:ns ## COG: mll7218 COG0657 # Protein_GI_number: 13476013 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Mesorhizobium loti # 110 332 86 312 321 132 37.0 1e-30 MKVRLTYIFFLLQMILPFQSVQGASVDSVLQQKMLQEQQTFLAQMKPGLQHLQMLAVRAA INGDDTQLQQIRQSRNHASKLPDSLHAFYPTPDICIYTPKNAVRQKRPLLLYLHGGGWCF GSINSCAQFCAAVAIEANCVVAALDYKLSPKHPFPAPLEDCQRAIKYLRKHAAEWGCDTT QIAIGGDSAGGNLALATALSVPGIAKVIPIYPVTKLFTEYTDSWTTYGKGYGNDAELLEA FNEAYGGQQVRHPLASVGLASDEMLSQLPPALFISAGHDILFDQTKELVSRLKKLHRPVI YEVYPTATHLFITVPGQPTAFHEAVKSVALFLNSAY >gi|281306336|gb|ADEF01000005.1| GENE 75 87473 - 89539 1699 688 aa, chain - ## HITS:1 COG:PA1271 KEGG:ns NR:ns ## COG: PA1271 COG4206 # Protein_GI_number: 15596468 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Pseudomonas aeruginosa # 63 195 22 153 616 87 38.0 7e-17 MVKEQFNKRNPLWFKHFNRKGYSLFAALGKEVLISVLSVSTLTYAKADGVSVRRNLPNDQ LTSQAVKLSEVVVTGSRAPLTVSQQSRMVTVLSRKDIDSAPVQSVNDLLKLAIGVDVRQK GPLGALTDVGIRGGNSEQVTILLNGINICDAQTAHNAFDIPVDLSEIERIEVLEGPAGRV YGTSSLLGAINIVTKAAARTSLTARMESGSYGYFSTGLRGNIARDKWNNQLSLSATRSDG YSRSKAGNLNADYCTLKSFYQGSYQDSWVDVKWHAGMSLKDFGSNTFYGVKWDNQFEHTF KTFTAIQAENKQGKFHLRPSVYWNRGMDRFELFRGEPNKYPFNYHRTDVYGVNLNAYFDW VGGRTAFGAELRHEDLMSGNLGEMLENPQPIHGTDRQYTNGLQRTNTQFVFEHNVLFNRF TLSAGLIAVKNSQANMNMRVYPGVDMSYRIGDAFKLYASYNTSLRMPSMTELFYSVGGHK ADKHLKPEELSALEGGIKFGNPYINAKAAVYYNHHKNLIDWIQDGTRNEKNELVWKSVNF GVINSLGVESSFDFNFLRILPSQRFLKKVSLGYSFINQDHKEEKGIVSKYVLEYLKHKLV ADAQLHLIGKLDLGLSCRYLDRMGSYKDRDGVAHSYKPYSVVDARLTWSESNWKAYLNAN NVLNKTYMDAGNVPQPGIWVVAGVALTL >gi|281306336|gb|ADEF01000005.1| GENE 76 89608 - 90258 468 216 aa, chain - ## HITS:1 COG:jhp1211 KEGG:ns NR:ns ## COG: jhp1211 COG1564 # Protein_GI_number: 15612276 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Helicobacter pylori J99 # 15 209 4 197 204 106 34.0 4e-23 MNYQLINSSTNFDVVVLASGDYPQHAVPTQILQQASRIVCCDSAIELLHPSLYNKVEAVV GDGDSMSDAAKLQFHDVLHVEHEQADNDLTKATRYCVSRNYSRIVYLGATGKREDHSLGN ISLMLRYFQTYGVQPVMVTDYGTFVPCLGDCTFESFAKQQVSIFNFSCHRIESEGLRWQS HAYQSWWEGTLNEAEGESFSIQSDGDYLVYRTHEPK >gi|281306336|gb|ADEF01000005.1| GENE 77 90255 - 90839 516 194 aa, chain - ## HITS:1 COG:PA1958 KEGG:ns NR:ns ## COG: PA1958 COG3201 # Protein_GI_number: 15597154 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinamide mononucleotide transporter # Organism: Pseudomonas aeruginosa # 6 186 4 180 191 72 27.0 6e-13 MTFDWLDIVTTILGLVYIYLEYKASIWLWIVGIVMPAMDVFLYWRHGLYGDAGMAVYYTL AAIYGYIAWKWGSKLFNQKKQELPITHIPGNHYLPVFAFFALAWGATYYVLVRFTNSNVP LLDSFTNALSFVGLWALARKYVEQWLFWIAVDVVCTALYVYKGIPFKAGLYALYVVIAVL GYFKWKSMMKQAAS >gi|281306336|gb|ADEF01000005.1| GENE 78 90907 - 93213 2589 768 aa, chain - ## HITS:1 COG:no KEGG:BF0565 NR:ns ## KEGG: BF0565 # Name: not_defined # Def: putative TonB-dependent transmembrane receptor protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 768 1 739 739 687 50.0 0 MKKFLWAVFAMTAANVYAVQPIDTLHTYELQDVQVISTRANKKTPMAHSDLSQKQIKKMN YGKDIPFLLSTLPSITLTSDAGNGIGYTSLRVRGIDPSRVNITANGIPMNDAESATLFWV NMSDFASSVQSMQLQRGAGTSTNGAGAFGATLNMQTENIGTKPFFGIDLSGGSYGSHKET LRFGTGLIGGHWGIQGRLSNIGSDGYLDRASTKLNSYFIQAGYFSDNTMVKFVTFNGVER TYHAWYYASKYEQSLYGRTYNSAGKYKDAEGKVKYYDGQTDNYHQQNYQLHWSQLLGDQW KLNVALHYTKGDGYYEQYKGKGKWYQYHLSKDTKLLGDLVRQKKMDNDFYGAVGSINYDN NSGLTANIGGGWNKYVGGHFGKVIWTGAPFYQIEDANGKKKKVYQMGPSTLEPDNEYYNN DTKKVDGNVYGKVNWEFVKGLSAFADLQYRHVGIKMTGPSDAWDNNKKQIVFNLDQKFNF FNPKFGLNYQADSNNRVYASYAIAHKEPTRNSFEQNLDTKLEAEKLGDLEIGYQFASAKY SAGVNLYYMNYSNEFVLTGELDAIGEMKTKNAGRSYRMGIELESAWQPVDWFTWNVNATF SKNRVKDWMVKLEDKKHASLGDTPTSFSPELIFNNIFSFNYKGLSANVHTQYIGEQYLTN TGLKNYQTKDAKGQDIDVSMMLGSIFTTNLNVAYTFACHKLGLKEATVGCTVYNLFSAKY DNNGWAAPGFKKDAQGNVVATDGGEGQYNAGFAPQAPINFMANLSLTF >gi|281306336|gb|ADEF01000005.1| GENE 79 93887 - 94030 66 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLRVLTYHFIPLSNPVNPKMISLHQRDEREKVVVSRTKSTKLYNHFL >gi|281306336|gb|ADEF01000005.1| GENE 80 94563 - 95411 789 282 aa, chain + ## HITS:1 COG:AGc3637 KEGG:ns NR:ns ## COG: AGc3637 COG0627 # Protein_GI_number: 15889292 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 19 275 20 308 322 89 26.0 6e-18 MKKLFLFVFLFWISAPLWAGKVITDSIHSHVLDSTMTYNVYLPTGYELSSQKYPIVYLLH GLYGTYKDWASKANMKEVADELIETQEAVPMVIIMPNAGNPDVRNQWNGYFNMPGWNYET FFFTELMPAVEKKYNTYTDKNHRAIMGLSMGGGGSTVYCQRHPELFSSCYAMSAWLDNKE PEVAPHGKDKLYYVSKSVRDHSAIDFIANADETTKQQLRSVRWFFDCGDDDHLVELSFKI HQLYAKAGIKSELRIRNGVHNWEYWHSSLRLALPFASIGFRK >gi|281306336|gb|ADEF01000005.1| GENE 81 95472 - 95900 374 142 aa, chain - ## HITS:1 COG:no KEGG:PRU_2778 NR:ns ## KEGG: PRU_2778 # Name: not_defined # Def: putative DNA-binding protein # Organism: P.ruminicola # Pathway: not_defined # 1 135 1 134 174 75 31.0 5e-13 MSILIRLMQSKFKNKVQQSKWYAKVVSTGEIHTDELATIIESNTTFKRGEVQGLITELVD ELKHQLSDGKTVVLDGFGRFHLTVESDLVAQQTDFNIHQHIRRIKCKFLPAGNRLAHTGI IQQTFSKDVEVEWIPGKAKRHS >gi|281306336|gb|ADEF01000005.1| GENE 82 96499 - 97641 894 380 aa, chain + ## HITS:1 COG:RSc2621 KEGG:ns NR:ns ## COG: RSc2621 COG4804 # Protein_GI_number: 17547340 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Ralstonia solanacearum # 15 380 21 350 355 110 25.0 5e-24 MEPSVQQYKQAVSVIKEAILHSQYKAAKMVTGEELSLNFGIGAYVSNRSRQEKWGTSIID NISEQLRRELPGLRGFSARSIRNMRTFYEYWKQFLIWQPSAAKLQLPINQGTIDIECFSL QKWSPVAIEINREEFLGISFSHHLEILQKTKDIQEVLFYIHQTVLHKWDKYDLRNRLKEG LYQKQGAAANNFLQTMPVNDARKAVGMFKDEYLLDYINVEEMEADNPEDVDEKVIEQAIV RNIKKFIMTFGRDFAYIGNQYHLEIFGEELFPDLLFLNRELNCMVVVELKKGAFKPAYIG QLQTYMKVLDDKVRKPHENPTIGILLCKSSNKAFVEYVIRDYNSPMGVATYKTAEDMSEE LRKALPDMDEMRKLITENNE >gi|281306336|gb|ADEF01000005.1| GENE 83 97642 - 99702 1206 686 aa, chain + ## HITS:1 COG:MTH501 KEGG:ns NR:ns ## COG: MTH501 COG1401 # Protein_GI_number: 15678529 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Methanothermobacter thermautotrophicus # 234 590 229 510 546 119 29.0 3e-26 MADYQLIVPKEKLQKVLTDEIKAVREKKQKIRRRRYNKMVQNFSFNELVSYLKDMNKEYG SLSYYLFAIKYGESLKDKNLTEIIRSAGLTKSMSKELSKGLRLYKVLKSNDFEIDKSDIQ NPNTRINYSLSDLANILYQMESNRNENGIGATATAFGFKYGKAISENLYSCGSIIDEAKR IFPDFSLTHTHDATMKYGVDLYNMFKNKSFGLSFSRRKAVYKLLSNCINSSTLYLTALRT KPFMLLAGISGTGKSRIVRKLAQATVTEELQRAEGYVGTDFANDRWTLHSPANFELIQVK PNWHNSMDVIGYLSNIPSPHYVFTPFIEFVVKAWQHPEVPFFLCLDEMNLAPVEEYFAEF LSAIESRSFEGGEYLTDPIIKPFNSFGMAKGERGEDINIGDMMTNTLFPNFKASDASSSV ARVVEHFRTRGLTLPKNLIVVGTVNMDETTFSFSRKVLDRAMSVEMNEVDYDRFLTDTTD DDLKAIVKAFEENSDADLNALLVDRHIEAREVMGELGDDATFVINYLKRINALLEGTPFK LGYRAANEALIYLQASKELGQADRMAAMDSFTLMKILSRIEGDETKLKITNSEADKERIA NAEVNVDEAKRYGDLNILTALRNIITQTLGELENTHAESDVTEEVATESDEEPAATERKK KERQSVKKIDSMLSQLRRDHFVSFWN >gi|281306336|gb|ADEF01000005.1| GENE 84 99731 - 100753 771 340 aa, chain + ## HITS:1 COG:STM3755 KEGG:ns NR:ns ## COG: STM3755 COG3943 # Protein_GI_number: 16767039 # Func_class: R General function prediction only # Function: Virulence protein # Organism: Salmonella typhimurium LT2 # 1 328 1 331 345 223 36.0 4e-58 MAKKFEIRNSTSEFLTFVAEGKEQGIQVLYKDETVWATQKAMAMLFDCSTDNIGLHLKNI FKSGELNESSVAEKNSATAADGKNYQTKFYNLDAIISVGYRVNSIRATQFRQWCTYVIRQ FSLRGYIIDKKRMENGSFIGEDYFEHLLAEIREIRLSERRFYQKLTDIYATAIDYNKAAP TTRLFYKKVQNKMHHAVHGHTAAELIVERANAKKEHMGLTTWENAPDGKIVKPDVSVAKN YLRQVELEDMGRLVNSVLDLAERMASRHIPMTMEDWAKRIDIILEAGGDAVLHDAGKVSA EFAKNYAESEFEKYRVIQDRLFHSDFDKFNELPFEDIDIN >gi|281306336|gb|ADEF01000005.1| GENE 85 100758 - 103115 1625 785 aa, chain + ## HITS:1 COG:no KEGG:BF2918 NR:ns ## KEGG: BF2918 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 73 594 65 569 742 371 41.0 1e-101 MTSVFNFEVSNEDLLVRFACPNHKRRIVETVRNLGIDTVCPDSAAKLLCRYTSEATNVKF SFDGYAREGNDIRHEAVFFENTEYPLIVRGKRKDLQELQLAINDHLRTDGKDKSTIISTG DELYGSLNFHNQVGMTDFCFAYKVKGEEQTKELKFMTEVLSYKLDYRSDLKTIISDIEHE YAMLSTSFLKDTYLSMRQGAGESNALIWWQIFKSCHADIMTAARQIIDRPKRRLRSVAKY ERAERMAYVPRDLENEYQTHKGNPAHLYRTEELTLSHDTIENRFLKYAIREMTRRFAVVK EHIMTAMHLDDPKRVDTSLGDMENELMQLSNNAFFRGVGQFKGFTQDNLVMKQAQGYKTI MEKWVELQQGYELEEGMRKLEVKDVCDLYEIWCFIKVKNIVQDVMNELGKRANPKVNGRD ITSDFIPQLVYGGSVSFINQAGIELASVCYNAEVHRGKAASAISGTNTMTTVQRPDIVLR LRKQAEGGMKFTYLFDAKYRIADTDENGNGYGSGYDVPPADAIDQMHRYRDAIYYTEEGC EREHLKKEIIAGYVLFPGRIPLEALDAEKGEYCYQQSNRLIGIGAFPLRPDQEQHASDGT IIVNTGSSEQALYRQIRHWLEDDNGRERLLEESIPQKGLEYSDEPVNKGTFYIASVDGHV NADKQLVLNGQGETFFSGYKSILSGVDFQKIKYFAPVDNHWVKGYYQVLSVEAKDMGEVL AKEKANAKGTALNYGGYDKPIRICLKLGKHTPLPTPFVYGLDSNASKGIAMTRKEFKEFC NKAMK >gi|281306336|gb|ADEF01000005.1| GENE 86 103258 - 105870 2230 870 aa, chain + ## HITS:1 COG:aq_505 KEGG:ns NR:ns ## COG: aq_505 COG1596 # Protein_GI_number: 15605977 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Aquifex aeolicus # 196 454 89 351 725 127 33.0 8e-29 MKKVILYILLLTLCPLTMTAQSSMTDEQILEFVLKENAAGTSQAQIVTKLMQKGVNIQQI RRVRDKYERQRKQSGLGNVADQTVARAESRMREANGNSHQAAKRFNTIKNKTDNREQQSV QRIQGQQSWKAEYDENSEDFLRMQNELQYITPTDSIEWLKQILKKRKEERRKVFGRDIFN NEELTFEPSMNIATPQNYRLGPGDAVYIDVYGASQKTIQSTVSPDGDINIEGFGPIQVSG LTIAQANQRLRMQLGARYSSSKVRLTLGQSRTITVNVMGEVKTPGTYTISAFASVFHALY MAGGTNDLGTLRNIKIYRNNRLISVADVYDYILNGKMRGNVRLADGDVIYVGPYDCLVNI TGKVKRPMYYEMTPKESVGTLLKYAGGFTGDAYKKAVRLIRKTGREYAVFNINEFDMHTF HVADGDSVSVDSILQRYSNTVEVKGAVFRPGLYQLGGDINSVRTLIQHAEGLKEDAFTAR AIIHRLKTDRTLKVLAVDVQGIMNGTAADVPLQENDVLFIPTKEEQMEQRTITIHGEVEY PGIYKYADNETLEDFVLQAGGLKETASTVKVDVARRIVNPKALTTDSLIAKTYTFALKDG FVIDGEPGFVLQPYDEVYVRKSPGYSDQKNVSVEGEVMFNGVYALNKRNMRLTDLLRAAG GVTDLAYVKGARLERVPNAMERARMETALKMQQEEMQRQLLQLATSSNNASAIQQLGQNT QNAQLKKFEVPATFPVGIQLDKAIANPNSDANIVLREGDRLILPQYTATVKVNGAVMYPN TVAYQKGKKARYYISAAGGFAQNARKSKAYVVYMNGMVGKVSEGAKIEPGCEIVVPTKLS RKMSIAEAMSLGSGITGIAAMIATIANMVK >gi|281306336|gb|ADEF01000005.1| GENE 87 106103 - 106756 262 217 aa, chain + ## HITS:1 COG:PA1130 KEGG:ns NR:ns ## COG: PA1130 COG1216 # Protein_GI_number: 15596327 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Pseudomonas aeruginosa # 2 216 67 295 325 62 24.0 8e-10 MGISTALNYAWNFANNHGYKAMLTMDQDSIFHYFPIFKNKVIEFWKRERLCICGPAICDA SKTTFETYDSFIEKKHIITSGMLVPIELLNKIGGYCEDFFVDGIDVELCVKARQYNYKSF IYRGAFLAQIYGTPQSRKILGKTLRSFGYAPNRLYNIFKSQIIIFRKYHYPLDILRDILY NYMFRFTLKGVMLVEHNKREKLKAVCQGIKDGLLAKI >gi|281306336|gb|ADEF01000005.1| GENE 88 106829 - 107881 648 350 aa, chain + ## HITS:1 COG:no KEGG:PRU_0084 NR:ns ## KEGG: PRU_0084 # Name: not_defined # Def: chain length determinant family protein # Organism: P.ruminicola # Pathway: not_defined # 9 340 19 345 358 241 39.0 3e-62 MDNSEYKRVDYRRVWQEIYKRKKIYFITIPIVFVLSCLYITCIPRTYSSSTEVALETESK GGTAGGLGAIAASFGINTEALETSDAITPLLYPDLLNDNGFISGLFNIKVCTLDGKIKTD YYTYIEKYQQYPWWTKFGDRIKRTFHKEEKKDTKNTTKNPYHLTKKDDGILNAIRKGITL KIDKKTGAINISTTAQDPLICKTIADSVREHLQQFITRYRTNKAREDVQYFRKLTEDAKR AYEKQRKLYGSYSDANMDVMLESFISKRNDLENEMQLRYNNYTTYQNQLQTAIAKVQEKT PAFTIIKGAEVPLKPIAPKRMIFVLVMTILGFVATSVYVLRDIIIPKSKQ >gi|281306336|gb|ADEF01000005.1| GENE 89 107978 - 109450 568 490 aa, chain + ## HITS:1 COG:no KEGG:Dfer_0062 NR:ns ## KEGG: Dfer_0062 # Name: not_defined # Def: polysaccharide biosynthesis protein # Organism: D.fermentans # Pathway: not_defined # 1 485 23 506 510 249 32.0 2e-64 MFILMIINIWAVRFILNGLGTENYGLLNTVIGVITTATFICSITAVSIQRFYSVSLGEND SKKFAQVYSISINISVIGCLLCLLLFETIGLWFVYEQLTIPAEKLTSVLWVYQFGMLTFC CSLLQIPFTAAIFAKEDMGVYSVISTIECVGKLIVAYLISFSTINNLIFYSGGLFIISIL VTTAYVMSCKKKYKECRYTNKLPNSLYRNILSFSGWTAFGSLANTGITQGSIILINIFFG PITNAAFGIAQQINNAFSSFSNAMILPFRPAMIKAYTEGRREYVLRLLMINSKFILFALL SIAMPIIIEMKDILQLWLAQSTDEMIVFSRLVIVYVIIMMMNNPITIIFYAAGKIKKYNL IVEGIMLLCFPTTWLLFLFGMPAYSVFYSMIAYIFFVHFIRLFLLKEIFPNFSILKYIAL LSIPSIGIIVSCSLAQYLISIFSFDAFMRICIYCILIPLLGISIAFLIGLDKNEQKEIIS FVRTKILHQI >gi|281306336|gb|ADEF01000005.1| GENE 90 109447 - 110733 401 428 aa, chain + ## HITS:1 COG:no KEGG:BVU_2394 NR:ns ## KEGG: BVU_2394 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 15 415 13 415 416 67 21.0 1e-09 MSDIIKNNILTSTYLVIWILTLIWYQRKNSKIDGGTAAIFFYIVYAVFSILTINDPLFSL MFNPLQVFPYIYLYSMLMLALAPVIYNHIHPTKIITPPNSRILTILAIFIIVNAILLIPS ILSDGVSGMFQLFTDETAGKEAYSEMLSHADETGKTISNIPSIFFNATSLIAIFLLFYFL TTNKKNKWLICGLAFCVCLNVFIPVTHGMRGGTIEALLVIIGAYALFSAYMDKRIVKRIR NMGIIFFCAISLPILAITVSRFGESAGGAGGAVNWYVGQGSLYFNNYALNAGGTRNGERV LNYFKRLTNNDVPHNYVERRDKYHNLELDDNYFSTFVGDFCIDFGPVCAVFIFVFFAIVA TRAIRTQRKEIKLHQILLLYFTLCVSLQGGMTLFTFSDAGNLQLIVFATLYIYLRYHEKL LEVFPLKE >gi|281306336|gb|ADEF01000005.1| GENE 91 110767 - 111912 1014 381 aa, chain + ## HITS:1 COG:CC0633 KEGG:ns NR:ns ## COG: CC0633 COG3754 # Protein_GI_number: 16124886 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis protein # Organism: Caulobacter vibrioides # 4 380 221 564 818 238 35.0 1e-62 MKARVIAYYLPQFHPIPENDKYWGKGFTEWTNVAKAKPLFKGHYQPRIPADLGFYDLRLP EVREQQAQMAREAGIEGFCYWHYWFGNGKRLLQRPFNEVLQSGKPDFPFCLAWANHSWKT STWENGGKDRMIVEQRYLGEEDYTMHFQEVLPAFRDKRYITIEGKPLFAIFDPYNFRDVS NFIKTWQRLAKENGLKGIYFIAMSNSTSTLQRNADGTLKRVAPNLQSSERVYNDLLNLGF DGINSFGKSRAEMLYMGKYARIAKKLLHQYLPFLPTHCINYEKITQHFFAPEDSWQNVYP SIFPQWDRTPRAGNSEGVYVNATPTTFKKHIQNALNVIKNKDMEHRILFLRAWNEWGEGN YVEPDLKYGHGFLDAIKEAIG >gi|281306336|gb|ADEF01000005.1| GENE 92 113098 - 113238 64 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYVLLSFGFFLVQNVSSFSRVARYTPSLSCILTSKISSKSNKANL >gi|281306336|gb|ADEF01000005.1| GENE 93 113679 - 114488 450 269 aa, chain + ## HITS:1 COG:BS_yveR KEGG:ns NR:ns ## COG: BS_yveR COG0463 # Protein_GI_number: 16080483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus subtilis # 1 232 1 233 344 76 27.0 6e-14 MSTDLISVIIPSYKPDNYIYRCLESVARQDIDKQRYEVIIVLNGCNEPYYTDIQKFLQQK FQGIKTLLLQTDVAGVSNARNIGLDNARGEYITFIDDDDWVSNNYLRGLLEAANPDHIMI SNVIQIEEKTQKQLPYYLHATYLNLKDINRVSKFKVRSFLSTACVKLIPKAIIENRRFNN QLSIGEDALFMFLISDKINGFSFAKSDVIYYRVKRDNSATYTERNFEQRLEIARKLICAY SHAYLPHISKYNPLLFISRIVATIRNLMA >gi|281306336|gb|ADEF01000005.1| GENE 94 114569 - 115324 410 251 aa, chain + ## HITS:1 COG:BH3661 KEGG:ns NR:ns ## COG: BH3661 COG0463 # Protein_GI_number: 15616223 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Bacillus halodurans # 5 250 10 255 257 211 39.0 9e-55 MNTYLVSVIIPCYNSGIYIKECVDSILQQTYQDFEILITDDGSTDLSTIKLLQQIEQCDK RIKVFYVDGNNGPAAARNNSITHAKGRYIAFCDSDDKWLPNKLSDQIPLFDNKDVAIVYS DYEKMDAQGKRNNRIVHAPKSLTYAKYLKGNTIGNLTGIYDTQKVGKVMQKNIHHEDYVL WLDILRRGWTALNTNTVTAVYRIHSNSITANKLKLCTWQWYIYRRHEHLGLISSMYYYLH YAYRAFVKFLI >gi|281306336|gb|ADEF01000005.1| GENE 95 115343 - 116215 554 290 aa, chain + ## HITS:1 COG:SP1367 KEGG:ns NR:ns ## COG: SP1367 COG3475 # Protein_GI_number: 15901221 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 16 274 21 273 281 114 32.0 3e-25 MDSQLNNSLLILFKAFIAFCDEHHLTYYAAYGTALGAVRHKGMIPWDDDIDVWMPRKDYD KLLSLRSSLNGTNYEITDVKDKGYYLYFAKFCDRNSTIIEREGEALMGLYLDIFPLDNYD NHKGKFLKRINWIYRILWLVYGRSYRTYSSIEIRTHLKKGEISFLPKLLFYNFLKPFRGV AKMGIRKIQGILLSIPETNKIWTYDVKSSLSVVFSKDWFGDGIKLAFEDLEITVPSNYDK VLKTYYGDYMTPPPATQRQSQHYRYFIDLEKRYSRKEIMEKMFGKRKEKQ >gi|281306336|gb|ADEF01000005.1| GENE 96 116742 - 118580 1475 612 aa, chain - ## HITS:1 COG:no KEGG:BT_4295 NR:ns ## KEGG: BT_4295 # Name: not_defined # Def: putative chitobiase # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 603 3 612 614 402 39.0 1e-110 MKKNKIIIASAMLVATLTATFTACSPDYETNFDKSLLEVPHKSQALITFQREGGERTIDV VTNVAKENWNAEANADWCTVEKANDKVLVKAGTYDGYQPRKAVVTVKYGHQECNVQVIQV GHEATLNLVEDGGFIMRKNGFMAYVEGNETEFVAPVSTNLNIDHVIVPDTTSWVHFDASQ KLEEDAQGRKLIKLRLDPNKTKADRYCTMTLQSSQNWDATQEFVLIQSRVGYKVIPCYGN TSYEIGDLGGKIRIPYVQNEKDGKWTVTVSDNAASWLHVDKKQLSNTDGELSGKVDMNLS DQPRTGTVTLKSENNDKLYIVTIKQNKFTPVPPFNVVNAKTKAGKGQITLTWDQPEVVNY TKMVITMHNVKIGKTVKKTLTDMNNNSVTFKNTFKFAGEYEFTIKTYGPTGMETKQPVTV KGTSDEWSESVQLKLTEDMITANATHPTDGKGIPGLIDNNTSTYYHSQWEKNSSDGKPHR IQIHLANPSAGEFYFDYMGRGDGDGGGDVKRAEVFGSNSGADADGAWTSLGVITYKLPEG RGKQGVAENHIKSAESYEYLRFVPLARRNKDPLGTQGTKNDWFNMSELRLFEVHDEAWAQ KNLETILGAKKY >gi|281306336|gb|ADEF01000005.1| GENE 97 118603 - 119640 887 345 aa, chain - ## HITS:1 COG:no KEGG:BT_4269 NR:ns ## KEGG: BT_4269 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 5 345 3 331 331 296 47.0 5e-79 MMNNKINKLLLLAVGITLFSCETYDFDQEQYKKEINLLQNSDGVYDRQCVAMEAETSVNG ASIKLVVGVSGSQLLSESVPVSIVPSDSLFKVFNKSNYDIDSTRFAKLLPKECYEEPALN GVIKAGESQVKFPIKLKNLDKLSPDSIYFLDYKLDPKSTTPFNKKKKEVLLRIHWKNEFA STKTQITYNYNSSYVVDLSSSQTFRPTNTLRAFPLTMNSVRMLAGNEDYGDYKKAAPQIK QKSVVFTVGKQLQTDPKKREVVVTPYNANEMEVVMLTPIGEYDNTFYLNELVALGGGNST YYKEFRVHYKYRLLNPQKDGTNKPGPFKEVKAKLRHQYNPRAEQL >gi|281306336|gb|ADEF01000005.1| GENE 98 119666 - 121720 1964 684 aa, chain - ## HITS:1 COG:no KEGG:BT_4268 NR:ns ## KEGG: BT_4268 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 684 1 683 683 897 65.0 0 MKKIIMTIAGAGLMAASGMLTSCDFLDVDNYFQATFKEDSVFHSKQNAEGYLWNTPQEFP HEGNIWGGSWNPGETASDEIAVKWQTSEFWGAQFSVGKINETNIPNWYLWKDMYVIIQRC NKMLANVDKVADMNDGDRREYKAYVHFMRGWAYYHLLMNWGPLLIVGDEIIPTDKDSEYY NRERATFDESIDYICNEFALSLKGISEPQDQSLAYFSRPTKGAALALIARLRLIQASPTF NGGDSARRCFNGWKRKSDGADYINQKYDPNRWAVAAAAAKQVVDMNYYELYTVKADKEFP YPLDNVDESLRNKEFPEGVGGIDPYHSFADMFNGEGLPMVNREFIWAHAASGSVIEYTQH CFPVGGGLGGWGGLSVPQRVIDCFLMADGKLPANSSLYDADFDDKTETTKNLSTFELKSD IPMMYANRSARFYASIGFPGRVWNMNSASADGSKTNKQFWYDNSDGIAGKAGAQNNPNDV NITGYTSVKYVHPDDSWALNTNGVMRTMKPYPIIRYAEVLLELCEAMNNIEGNPTVKTWN RSGELVDVSISRDAEFMAKYFNMIRYRVGLPGVDNNTLNDREAFEKVIRNERQVELFNEG YRYFDTRRWGTYLDEDANSSNWRGLDVGKDRDDTNSNGGFWNIVQIDEQNYRDRIAKPKM IFLPLNHYELLKLPKMDQNWGWER >gi|281306336|gb|ADEF01000005.1| GENE 99 121743 - 124841 2747 1032 aa, chain - ## HITS:1 COG:no KEGG:BT_4298 NR:ns ## KEGG: BT_4298 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 1032 1 1029 1029 1460 68.0 0 MKQFIYMLALLLAIVTNGFAQNANDKTKSKTFTVSGVVVDEQDEPYPGATIIIKNVPGRG VVSDLDGKFTIKVDPNATLVIQAVGMKTIEKLVTKDLADQKFVLKEDASTVDEVVVTGLS SQKKVSVVGAISTIDPKELKAPGMSLSNMLGGRVAGVITMQTSGEPGRNLSQFWIRGIST FGANGSALVLIDGIEGKLDDIDVDDVESFSILKDASATAVYGVRGANGVVIVTTKRGAMG KLSITGRASVKLSQIKRIPQYLGAYDYALLANEARAMSGESDLYTPLQLDLIKHGLDRDL YPDVNWTDEIMKKTSLQQNYYMSARGGGDIARYFLSLGYQDEGAAYNQKGNVFKKPLTYR KMTYRANIDMNLTKLTTLYFGVDGNIVNYTTPGGMGTNAVWNNIRVMNPLMMPVEYSDGT IPTFGRDNLISPYAALNYYGYKDQNSTRNMTTLKLTQKFNGVLQGLEASVQAMMDHTTDF NERRIIAPDLYHATGRSAQGALIKSLNTRALDMVYGSSNSGWRKYYLEAKANWNRTFGDH NMGALIFYYMEDTKGTDWGNDAMGINAIPARRQNLSGRLHYGYKDTYFIDANFGYTGSAQ FKKGERFGFFPSIAAGWIPSNYQWFKDAMPWFSFLKIRGSYGLSGNDQITGTRFPYLTLI NHTAPTYWGYQGLGIREKQIGADNLKWEVSRKSDVGIEGKFFKDRLAFTVDFFYDVRDNI YRQRVTLPEYAGMITIPFSNVGKMHSYGSDGNISYHHPINKDMSFTVRANYTFSENIVDN LEEPLYAYGYQSSNGKPYSVLRGLIAEGLFKSKEEIETSPEQMFGKVRPGDIKYRDVNGD GVVNNDDRVPLSYGNQLPRLMYGFGADFAWKDLTVGFLFKGSAKVEYYRSGLYNDSGWIP FYNGEIGNVLKHANNPKNRWTPAWYSGTTATENPNAEFPRLSYGGNSNNAQLSSFWKRNG SFLRFQELSVRYKLHHKKWITACGLSSLDCEFVMNNIFTIDKVKYFDPEQASANGAVYPL PMTYAVQLYLNF >gi|281306336|gb|ADEF01000005.1| GENE 100 124872 - 126332 1208 486 aa, chain - ## HITS:1 COG:no KEGG:BT_4299 NR:ns ## KEGG: BT_4299 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 486 1 495 495 500 51.0 1e-140 MKKSKILMVGVLACALFAACSDKDTSTAGAAFDPSKPIVVDDFYPDSGGVATSMIISGSN FGTDTAGLRVMYVDEDGIEHRGGLVSSNGEKIYCTVPKGLTYKRNIAIKVMRGEGEKAIS GEAPNKFIYRTQTAVTTVIGQPNSENQATVPGTLTSTTLSAPAYICLDNEDNIFICERTH HTGRADGCQARNSKNENKDGNVLIASLKRNNVRFLGEDCGMVNAPAFSDESGVEAMYAPL DGGMDFYRYQKATNFAQQKLRVIKTEETKTLDEKNWKFCFVVNKKDHQLYTVMHQGQLVR INPKTRKTTILLKKIGIHGASSNGSDSYFAFSPVMPNRLFICQTDNNEIWYVDIDQLEGK DPNEYHGEKYAGRACWEGTSAGSGWEDGLLKNAKFKYPRQICFTADGKMYIADSMNSCIR CIDTNQPDNKATVTTVIGLPGSAGFKEGGPDVAQFRYPRGVAVNADGSIVYVADTGNRCI RKLTIE >gi|281306336|gb|ADEF01000005.1| GENE 101 126722 - 127417 571 231 aa, chain + ## HITS:1 COG:BH3650 KEGG:ns NR:ns ## COG: BH3650 COG2148 # Protein_GI_number: 15616212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Bacillus halodurans # 62 226 16 178 205 152 45.0 5e-37 MLRYIIKHFNKVKQIPAYIKYNNDIQNKRFIPDGMNEFERNIKRCIDFLIALVAIIIFLP AFLLCYILVKREDGGPAIFKQERIGRFGRPFTIYKFRSMCIDAEKDGPQLYGHEHEHRMT KIGRYLRTHHLDELPQLWNVVKGDMAFIGPRPERKFYIDQIIKRDPRYVYLYQIRPGVTS YATLYNGYTDTMEKMLKRLDLDLYYLEHRSWWFDFKILTKTFINILFGKIF >gi|281306336|gb|ADEF01000005.1| GENE 102 127611 - 128090 325 159 aa, chain - ## HITS:1 COG:no KEGG:PRU_1338 NR:ns ## KEGG: PRU_1338 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 14 159 1 131 131 83 34.0 3e-15 MEFSIYSFQKSVRMRHFAYVVVLCLSLCGMISCEVETSDNGELDGFWHLERIDSLQNGGS KDLTLHRIFWSFQGKILMLNDMDYQHPECVMTFTHHDQQLLIVNPLMSDRTKGDPRIKDV KVLAPYGIHQLDERFEVETLSNRKMILRSQRYRLVFIKF >gi|281306336|gb|ADEF01000005.1| GENE 103 128071 - 129639 840 522 aa, chain - ## HITS:1 COG:no KEGG:PRU_1339 NR:ns ## KEGG: PRU_1339 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 29 519 20 492 494 509 52.0 1e-142 MKRQIIFYGLFFLAQSVCAQLNQQEEQTEKLNLGSNMNYHVEFQSSFAHGHTPLWMHSNR HGLGSLESVNGYLRSSIIRPLHTDSLRRWGVGYGVDVAIPYHFTSKAIVQQAFAEVRWLH GSLSVGSKEYPMELKNNALSSGSQTFGINARPVPQVRLALPDYWRLPFGNRWLHIKGHIA YGRMTDDNWQHNFTQRQSKYVDQVLYHSKAGFLKIGNEDRFCPWSLELGLEMATLFGGTS YQPHSNGETKVVKGNTNMRAFWNAFMPGGHDAPEEGIVYQNVEGNQLGSWLFRMNYEGDS WCVRLYGEKYFEDHSSMLQLDYDGYGTGEEWNVKKKRKFFLYDFKDMMLGLELNLKHNHW LQSLVFEYLYTKYQSGPVYHDHTQNLSYHISGRDNFYNHYIYPGWQHWGEVIGNPLYRSP LYNENGTIEIQNNRFKAFHLGLSGEPAERLNYRFLATYQEGFGTYNTPFFKKHHNVSLFL ETAYRWRYGWRFMASFGADFGGILGNNQGFQLTVSKHGIFNL >gi|281306336|gb|ADEF01000005.1| GENE 104 131288 - 131536 100 82 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKGRREVTPHFLSLFSSERLRSFDFFLSHVHFVCSVDFSLFLSFMLFSTTRYIISKESSG GSTMKNLPSQLSMKRLHAAETG >gi|281306336|gb|ADEF01000005.1| GENE 105 131769 - 131978 127 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIAQDIIQQLMLRTKELRIPYRMIAQDIIQQLMARAKAGRSPKRNIAQGNTLGGEVVSSL ARCKRKRSQ >gi|281306336|gb|ADEF01000005.1| GENE 106 132894 - 133094 110 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879772|ref|ZP_06288502.1| ## NR: gi|282879772|ref|ZP_06288502.1| hypothetical protein HMPREF9019_2250 [Prevotella timonensis CRIS 5C-B1] # 1 66 11 76 76 87 100.0 2e-16 MDLVVENSVNENNNESNRKHENVRVIKRKPKNAGVLVIKTKRNEVQPLSYPSSKVKDCND DFRLFR >gi|281306336|gb|ADEF01000005.1| GENE 107 134688 - 135695 598 335 aa, chain + ## HITS:1 COG:no KEGG:PRU_1340 NR:ns ## KEGG: PRU_1340 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 2 256 1 250 279 207 48.0 6e-52 MMKKLIFTLSALFFISVSASAMSYRQVRQQALFLTDKMAYELNLTDDQYEAAYEINLDYL MRIDDYDDLYGVYWNRRNMDLSYILFDWQYRLYCDATYFYRPLYWNAGYWHFSVYARYPR RDYFYFGTPRFYTVYRGGHSWHCNGNRSWYYGRSYGNDYRNNGIGMRDRFHSGYYNNGSR SFGNGPQRRISTYGRGSGNGDMYNRSGSIRDYQNVPDQNSNTVFGRRRSSTRTTVTQPAP NDNGSRSGSFGGSRSYQIPDNRPSVPNRTFTPNESSRPSRQYTPQRSNVMRNPSTPPSRN FGAASRGGRSSIGRSVPRGNANNNNGSTVHFGGRR >gi|281306336|gb|ADEF01000005.1| GENE 108 135839 - 136345 490 168 aa, chain - ## HITS:1 COG:BS_yhfR KEGG:ns NR:ns ## COG: BS_yhfR COG0406 # Protein_GI_number: 16078098 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Bacillus subtilis # 1 137 1 140 193 75 35.0 4e-14 MTILYLVRHGETVENVQKVMQGQTPGTLSELGEQQAAHLCEQFRSEAIDMFFSSDLQRAV QTCACIAAPHQGVVHQTPLLRERDWGDFTGCYIPDLKDKPFPDNVESIEALKQRAAAFLD EVRQRCPSGTVLAVGHGIINKAIQSVFYRLPMSEIARMNNAEVRKLQL >gi|281306336|gb|ADEF01000005.1| GENE 109 136352 - 137122 710 256 aa, chain + ## HITS:1 COG:no KEGG:PRU_1342 NR:ns ## KEGG: PRU_1342 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 28 240 1 212 215 179 45.0 7e-44 MILHKNNKKELELWEIVCTFVTYIKIFMKTVQNSFIRSLCAIIIGVLLIRYREETVTWLT ILIGVLFFLSGLISCITYFIDKKHQDETVVLDANGRQISGFRPTFPIVGLGSMVLGAILA LMPTVFMTGLVYILAAILILGAINQFVILATINRILRVGIIFWLLPCFVLAIGVIAIVAP RWIASAPLFVLGWTLVLYGVIECIDAFKVMSVNKKYKQNPTLEETAIETTEIEPSVTEPT EVVDMTNEETNPTPKE >gi|281306336|gb|ADEF01000005.1| GENE 110 137248 - 138546 1125 432 aa, chain + ## HITS:1 COG:HI0350 KEGG:ns NR:ns ## COG: HI0350 COG0477 # Protein_GI_number: 16272301 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Haemophilus influenzae # 24 428 22 422 425 89 24.0 1e-17 MNLNSTTSPNKKLNPIAWVPTLYFAMGMPFVVLNMVTSLMYKGLGISDTQITFWTGLIML PWTLKPIWSPFLEIYKTKKFFVVLTQLLCGVMFALLAFALNLSNFFAITIGILAVIAISG ATHDIAADGTYMSVLSTEEQARWIGWQGAFYNVAKIFATGGLVYLAGIFIKSYGVTKAWM FIMLITGTTMLVLGCYHFFMLPTDEKSDKQRKSAREIWTELWMVFAEFFKKKHITYYICF IILYRFAEGFVMKIVPLFLKAPVSEQGLGMTEQEIGLCYGTVGAAAFVIGSILGGYYIAH RGLKKTLFSLALVFNVPFVAYNLLAIYQPQDLIFIGSAIGLEYFGYGFGFVGLTLFMMQQ IAPGKHKMSHYAFASGIMNLGVMLPGMLSGAVSDALGYRHFFVFVLLCTIPALLITWFVP FGASPNPSQGGE >gi|281306336|gb|ADEF01000005.1| GENE 111 138753 - 139751 940 332 aa, chain + ## HITS:1 COG:TM1225 KEGG:ns NR:ns ## COG: TM1225 COG2152 # Protein_GI_number: 15643981 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted glycosylase # Organism: Thermotoga maritima # 9 331 6 326 326 380 56.0 1e-105 MSKLIIQGQPLPNMPWEDRAADCKEVMWRCSANPIIPRNLLPTSNSIFNSAVVPFKDGYA GVFRCDDTNRRMVLHVGFSDDGVKWNINEEPLRFECDNKEIGEWVYGYDPRVCFIDDRYY VTWCNGYHGPTIGVAYTFDFKTFHQLENAFLPYNRNGVMFPKKINGNFAMLSRPSDTGHT PFGDIFYSESPDLVYWGKHRHVMSPAAFEVSAWQCMKIGAGPIPIETSEGWLMFYHGVLR SCNGYVYSFGSALLDLEQPWKPIYRSGPYLISPQTQYELTGDVPNVCFPCAEVHDPNTGR VAVYYGCADTVTGLAFGYIPEIIEFTKRTSII >gi|281306336|gb|ADEF01000005.1| GENE 112 139946 - 144490 3058 1514 aa, chain + ## HITS:1 COG:TM1193 KEGG:ns NR:ns ## COG: TM1193 COG3250 # Protein_GI_number: 15643949 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Thermotoga maritima # 28 1044 7 981 1087 576 35.0 1e-163 MKNILCLVMAFVTATFFEQNIQAQSMNEWDNPSITHLKREEAGALTIPQENSIQEDCVPM EQSPYYQSLNGTWKFMWMPDPTKRPTRFFAANYDDSAWDDIDVPSTWQVYGVRNGKQWDK PLYTNFNYPFTYNWRTFSVMADRPSGWTYNNNMRNPVGSYRRTFSIPSTWNGRDVHLRLN GAGHGYYVWINGNFAGYAEDSYLPSDFNITSLLKVGTNEIAIQVYRFTSGSFLEDQDYWR LTGITRDIFLWSTPKTCVKDFFFKTTNLSPDGTSATNEVSLSIAGKTTQNTLVEAKLLDG KKVLATVNKQVTTGKSTLKLPTVSGIEAWSAERPTLYNLVLTLKENGKTIDTRACKIGFR TISIGQDGAFLVNGKSVIFHGVNRHEFSEENGRTVSKQEMEQDVKQMKQLNINAVRTSHY PNSPYFYELCDKYGLYVLAEANVECHGKTSLSSNELFRAAMVERNTRHVLSLRNHPSIVI WSGGNESGGGDNFRSVMEAIKQLDNTRLTHYEGNSQWSDMTSTMYASYDRIKNIGEQRLA EYKAGWRPKPHVQCENTHAMGNSMGNQREMFNLYERYPALIGEFIWDWKDQGIKMPVPGK SNQYYWAYGGDFGDLPNDNNFCCNGIVLPDNTPTAKTFNVKKIYQPMDFRMKDSLQYIFV AKSKLNQRRLNDVDLTYQLLKDGIAIAQGTVNNIDIAPNDSMEIKLNGLPTLDDEAAEYF IRFTAKLRQATLWADAGYEVASEQFKIRNAIHKKPHVSSNSNPLQLTQNEGTVTITGSDF SAVFTNGILSSYYHQGKQLISSDILLNAFRLPTDNDKTQTGNWDNMGLRMLNYSLGNTDA ALDIDGKRASVKTECTYTGTNGTAFNVNQQYTILNDGTIIVNNIIDPAQKGVVLPKLGFR LGMPQSFNKMQWFGRGPWDSYKDRRESAFEGVYGSTVEQQFTPYVKPQECGNKENVRWLA LTDRQGSGLMFVAPAQMATTVANWKAEDNYTNRNNRSAHPYQLVTTSETVVCLDAAQRGL GNASCGTDVMPKYELTAHKTSFDFIILPLAHSHSEEELAQLAQIDNPLCQPVHIERNKDG WVSISSPQPNVVIHYSLDGKPEQVYSKPFYLKSRGVIKAYASSPDHENSMVTTVEFGIMI DKSAWRVVSYDSEQGGTEQAAYAIDNNENTIWHTQYQPSKPTFPHEIVVDMGKSYRISAF YYQGRKDLVNGRIGDYEIFFSNDLYKWGAPAAVGRWENTSAQQTVPIISKPVARYMKLIA YNAVDKTNFASAAEIGINADEEIGDGQVTAKDELDGRTFYLREKESGLYLRYQQDQSSSY QGDYCLGQLDINDEAYKFTFSRSEGFTNIYSVRNSGLYMAGVTGNWQCVAMQYPFSNQQL IQAEWVGENEYKLRGMWQIHRYLNFDEKRINAYVYPDKNTGASFIMELPTGIEILSHKQS LNVHPTVSKGTIYIEGQNATRVEVYNTMGKQIQNVIGNNTFSLTLQAPNGLYFVKLYNLA TGEQRCVKIVLTRH >gi|281306336|gb|ADEF01000005.1| GENE 113 144588 - 145229 780 213 aa, chain - ## HITS:1 COG:BH1275 KEGG:ns NR:ns ## COG: BH1275 COG0572 # Protein_GI_number: 15613838 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Bacillus halodurans # 12 210 7 205 211 194 49.0 7e-50 MFPLEFNHKITVIGIAGGTGSGKTTVVRKLVEALPPAYVAVVPLDSYYNDTSEMTEEERH AINFDHPDAFDWKLLIKQVNLLRSGESIEQPTYSYLKCNRLPETIHVDPKPVIIIEGIMT LLNKRLREMMDLKVFVDCDSDERLIRNIQRDIVERGRDVSMVVNRYLEVLKPMHEQFIEP TKRFADVIIPQGGDNIKGIDILSKYVERLVLVG >gi|281306336|gb|ADEF01000005.1| GENE 114 145241 - 145828 383 195 aa, chain - ## HITS:1 COG:NMB0698 KEGG:ns NR:ns ## COG: NMB0698 COG3663 # Protein_GI_number: 15676596 # Func_class: L Replication, recombination and repair # Function: G:T/U mismatch-specific DNA glycosylase # Organism: Neisseria meningitidis MC58 # 1 191 28 220 229 189 46.0 2e-48 MNNDLPTIERHPFEPFLPKHARLLMLGTFPPAPKRWSMPFFYPNFQNDMWRIFGYLFFND KNHFVNEGEKSFKLDELKAFLQEKGVALYDTALRVRRTKNTASDKDLEIVEPVDLDALLR SLPQCRGVLTAGRLATKVFTQHYGVSAPQMGQYHTFPFEGRTLRLYRMPSSSRAYPMKIE EKAKYYQVMFQDILV >gi|281306336|gb|ADEF01000005.1| GENE 115 146077 - 147108 1051 343 aa, chain - ## HITS:1 COG:no KEGG:PRU_1345 NR:ns ## KEGG: PRU_1345 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: P.ruminicola # Pathway: not_defined # 21 340 1 319 320 421 60.0 1e-116 MLSLLLVLGLLRLNAQTNYSVYGVGFYNQENLFDTCHDKGKNDYDFLPTGSYKWDKLKYT NKLRNMARALADMGTDVLPKVGCAMIGLSEVENARVLDALVAQPPLAARGYRYIHVEGPD RRGIDCALLYNPQLFTPQTVKLVPYVPQLPKDSAFHTRGYLTVTGTLGGEHVAVIVCHWP SRYSGSYYREVAAAQVKAVKDSLLRQYPAIKVMVMGDMNDDPTNRSMAKVLSAKAEVDEV GKDDMYNPWYNILAKQGRGTLMYQGGWNLFDQIVLSPNMLNQNGKRDYSSLKYWKCQIVR YDYLIQSTGKYKGAPKRTTAGGVWLNGYSDHLPVVVYLVKKQS >gi|281306336|gb|ADEF01000005.1| GENE 116 147161 - 147298 56 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLEENKRIFCPPRYLISRKQLSLHHIAGELKLSVHICGTGALSTE >gi|281306336|gb|ADEF01000005.1| GENE 117 147355 - 149916 2594 853 aa, chain + ## HITS:1 COG:no KEGG:BT_3560 NR:ns ## KEGG: BT_3560 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 2 853 1 846 846 662 44.0 0 MMQQKLKLALLALCYASLTFAQNDKTKTNKNPMMDESAFTFTEAQLGEDENMTQNVMILN SSTNAYVSGVGYRFSPVRFRYRALSQEYNDVYINGVPMNDMESGQFRYSMIGGLNQQTRN VDFALPFESNNFAMNALAGSYNYDFRAGSMAAGNRLSLGAANRSYSARGMYTYASGFNAN GWAIAANLTYRWANKGYVEGTFYNSLSYFLAIQKRWTNGHSLSLSTWGNPTERASQGAST DEAYWLANNYLYNPYWGYQNGKIRNSRVVNDFAPSALLTWDWDIAKDTKLTTSLFGKYSK YKSTKLNYNNAENPQPDYWKNLPSSYYEVWGDEANRNAKSHTAFLAWNEAYNYWTAAKEN RQVKWDQLYWANQQAAKTGSDALYYVQAKHNDNFVMNLASTLTTKLSKNQTWNIGAVLGR NQGGHYQTMEDLLGANSFHNINTYAVGYYPKSSDAVQYDLNTMGADRTGRLVGKGDKFGY DYDILIHKALVWTNYLANMGRFHLMVAGKVGGTDMQRQGYMRNGLFPENSYGKSGHAKFL DGGGKASITWDAGLGNIVSVGAGYEWRAPTARTAFASPEMNNDFVLNLKNQQVFSSELGY QYQNAWVHANINAYYNRMNHVTEWQNFYLDDINSFSYVSMTGIEKEAYGVELGARFKLAS YLDLTTLGTWSEAKNINNAKVRYLNSTKAQYVDETVYNKGMREGGTPLTAASLGLSFHQG GWFVDLNGNYYDRIYLFYTPCYRYESALHLNIKRDNERNNIVPEQAKGKGGFMLDGSFGK SIRLKKGQLNLNLMITNILNNRRIVTGGYEQSRSSFYTTENGDDVTRTYKFPHNPKKYYA YGINGMFQISYRF >gi|281306336|gb|ADEF01000005.1| GENE 118 149931 - 150788 842 285 aa, chain + ## HITS:1 COG:no KEGG:BT_3561 NR:ns ## KEGG: BT_3561 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 282 1 274 277 199 38.0 8e-50 MKKIKYIVIALACVCLSGCMADDYDAPQLNQPLYGNNELTETKVLSIAQLKQQYQGVIAA SGLEEITEDIQIKGWITGNDVEGNIYNQFAMQDETGAILISVAQGGLYGYLPVGQEVLIS LKGLNIGGYGSQAQVGGIYFNKRDGSPQVGRMNRFVWMSHFKLLGTPQPEKVKPTVFDQS KMSNQQYLTNNSGMLMTLKNVQLEGANGKAVFAPKDKSIALIANAANRTLKGINSKTMVV RTSTFADFANQPMPTGAVDITGVFTRFRNTWQILLRSADDIKPAK >gi|281306336|gb|ADEF01000005.1| GENE 119 150819 - 150950 71 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTFLNEGLKPKLNRTIINKRNNDEKAILFIPIADHRGTEPYQL >gi|281306336|gb|ADEF01000005.1| GENE 120 150886 - 152316 1395 476 aa, chain + ## HITS:1 COG:no KEGG:BT_3562 NR:ns ## KEGG: BT_3562 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 180 473 41 352 654 77 27.0 9e-13 MKKLFYSFLSLTIAALSLTSCEDVPAPYEYPEDNSGGEIVAPTDPKGTGTLEDPYNVAGA IKMIKGLETGANSAEVYVKGKIVSIKEINTTNFGNATYYISDDGTSKGQLYIFRSLGLEN KKFTSENIKVGDEVVVCGQFTNYMGKTPETVTNKSYLYSVNGKTSDNSQPQEPGTNVNPT GEGTEASPFNVAAAMKKDKVAKVFVKGYIVGFIPGKDKNEAKFTAEGCETETNFLVADKA DETNIANCMPIQLPPGSIRAGLNLKQNKDLYKKEFTLYGDIEKYFGITGLKNVSYALVGT KSFGTKPGQPVMPSTDILNETFAESIGSFTIANEKDMPQGLKYVWFVDKKHQQVKASAFF QNKKFETESWLISPALNLSGKTTVTLSVEQTANRFNSLKDEIFIKISTNYKSGKPSTATW EVLTPSKWPSNSNWIFVNSTIDLSAYAGKKDVRIAFQYKSSSQSAGTWELKNLVVK >gi|281306336|gb|ADEF01000005.1| GENE 121 152414 - 152665 375 83 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|60280046|gb|AAX16386.1| 50S ribosomal protein L31 type B [uncultured murine large bowel bacterium BAC 31B] # 1 83 1 83 83 149 80 1e-34 MKKGIHPENYRPVVFKDMSNGDMFLTKSTCKSNETVEFEGETYPVVKVEISSSSHPFYTG KSKLVDSAGRVDRFMNRYGKIKK >gi|281306336|gb|ADEF01000005.1| GENE 122 152755 - 153678 678 307 aa, chain + ## HITS:1 COG:BB0411 KEGG:ns NR:ns ## COG: BB0411 COG1864 # Protein_GI_number: 15594756 # Func_class: F Nucleotide transport and metabolism # Function: DNA/RNA endonuclease G, NUC1 # Organism: Borrelia burgdorferi # 121 284 16 175 195 97 34.0 4e-20 MKQLHSLFFVACCSLLVIGCNSDNNSTGGETESNTNANRLVGVSTIGNPTMPPEICRLEF PKIKGGNSMIIVHKAELNARTHEYGVNYSVEWDTQKKSQRWSCYQMYRSIAKPHTKRYRS KTNQYPQDSKLPEAFQFASDPYWRTGYDHGHICPSADRLGSADANYQTFFLTNMQPQVNG FNAYVWANMENQLRIWDRDDFRDTLYVCKGGTIDKQNQILTITSKGLIVPKYFYMAILCK NKLGYKALGFWIEHEANDDTDLGKYVVSIQELERKTGIDFFCNLPDNIERRVESLPKEKI KLAWGLR >gi|281306336|gb|ADEF01000005.1| GENE 123 153848 - 154375 446 175 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879788|ref|ZP_06288518.1| ## NR: gi|282879788|ref|ZP_06288518.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 175 1 175 175 302 100.0 4e-81 MKKITQLLPIALMALFSFGFVSCTVDDDYYYDDDYDSEYVDLTHMAQILRGHWTGKTAAR FYNAQQQLVEEVYDTDIEFDQYDSNSLSGRGRQLDYIRGELVYDRVFSWRIDRGTGDIIM TYNGENGENFQMVIDYDDLKLTDRSFSGVQRGNGETDEFAYDRYTYAKKVSFSMD >gi|281306336|gb|ADEF01000005.1| GENE 124 154678 - 155226 539 182 aa, chain + ## HITS:1 COG:FN2007 KEGG:ns NR:ns ## COG: FN2007 COG0386 # Protein_GI_number: 19705303 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Fusobacterium nucleatum # 4 182 19 197 199 226 60.0 2e-59 MKTVYDFTVKDRKGNDVCLKEYANEVLLIVNTATKCGFTPQYEELEKIYKKYHAKGFEIL DFPCNQFGQQAPGTDESIHEFCKLNYGTEFPRFKKIKVNGEDAEPLYKYLKEQKGFAGFD MSHPIAPVLVDILSKEDENYDKNPDIKWNFTKFLINKQGQVVARFEPTENLDNVAKKIEE LL >gi|281306336|gb|ADEF01000005.1| GENE 125 155422 - 156369 708 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 10 313 5 306 306 277 46 2e-73 MESKEYTRCLIIGSGPAGYTAAIYAARADMNPILYCGLQTGGQLTQTTEVENFPGYPTGV DGNQMMVDLREQAERYGTEVRDGEIVKADLSKAPYLLTTEKGQQIEAETVIIATGASAKY LGLDDEEKYKGKGVSACATCDGFFYRKKVVAVVGGGDTACEEATYLAGLCSKVYMIVRKD YLRASEVMKQRVEENEKIEILYEHNAEGLYGKDGVEGVHLVKRLGQSDEERYDLPIDGFF LGIGHKPNSDIFKEFLETDKIGYIKTIAGTPKTNIPGVYAAGDVADPVYRQAVVAAGSGC KAALEAERYLTEINK >gi|281306336|gb|ADEF01000005.1| GENE 126 156519 - 157742 1383 407 aa, chain - ## HITS:1 COG:CAC0476 KEGG:ns NR:ns ## COG: CAC0476 COG2195 # Protein_GI_number: 15893767 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Clostridium acetobutylicum # 2 403 3 406 408 458 57.0 1e-129 MDIVERFINYTKFDTQSAEDSQTVPSTSKQLIFAKYLKEELEHEGLEDVEMDEKGYIYAT LKANVKKEIPTIGFISHYDTSPDASGANIKARVVKNYDGKDIVLSEGIISSPSKFPELKA HIGEDLIVTDGHTLLGADDKAGIAEIVQAMCYLRDHDEIKHGDIRIGFNPDEEIGMGAHH FDVEKFGCEWAYTMDGGDLGDLEYENFNAASAKIYIKGVSVHTGYAKGKMLNASRLACEF NAMIPDTELPETTEGYQGFYHLLGMETRTEEAKMSYLIRDHDRESFEKRKDFMEACAAKM NEKYGEDTVKITIKDQYYNMKEKIDPNMHVIDIVLQAMQETGVPPKVEPIRGGTDGAQLS FKGLPCPNIFAGGVNFHGPYEFVSIQVMEKAVDVIVKICEITAGFND >gi|281306336|gb|ADEF01000005.1| GENE 127 157770 - 157892 57 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFDCLTFGELSHVILSMPTLLQHTMTSKHISSVLRFFHDI >gi|281306336|gb|ADEF01000005.1| GENE 128 159175 - 159351 201 58 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879792|ref|ZP_06288522.1| ## NR: gi|282879792|ref|ZP_06288522.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 58 1 58 58 88 100.0 1e-16 MIKTSVYNTKSRAKYIDKFYQSLIGLNQKEIVYASYHYFQNGTYIKSFNDIKDIEKGI >gi|281306336|gb|ADEF01000005.1| GENE 129 159397 - 159495 79 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFEITSKSVLFFLHISSNVFRGKQKEDLQNGV >gi|281306336|gb|ADEF01000005.1| GENE 130 159650 - 159766 75 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLVLISDKIPEPNKLKEKLKRVSSYLDSTLNRNYIGTL Prediction of potential genes in microbial genomes Time: Sat May 28 06:13:22 2011 Seq name: gi|281306303|gb|ADEF01000006.1| Prevotella timonensis CRIS 5C-B1 contig00007, whole genome shotgun sequence Length of sequence - 42555 bp Number of predicted genes - 37, with homology - 34 Number of transcription units - 22, operones - 8 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 233 88 ## gi|282879794|ref|ZP_06288523.1| conserved hypothetical protein - Prom 449 - 508 5.0 - Term 431 - 476 9.6 2 2 Op 1 . - CDS 511 - 780 209 ## gi|261879488|ref|ZP_06005915.1| conserved hypothetical protein 3 2 Op 2 . - CDS 822 - 983 82 ## - Prom 1037 - 1096 5.2 - Term 1249 - 1296 9.1 4 3 Tu 1 . - CDS 1450 - 1806 162 ## gi|282879795|ref|ZP_06288524.1| hypothetical protein HMPREF9019_0328 - Prom 1909 - 1968 8.0 5 4 Op 1 . - CDS 2220 - 2666 177 ## gi|260591517|ref|ZP_05856975.1| hypothetical protein HMPREF0973_00950 6 4 Op 2 . - CDS 2683 - 2889 195 ## gi|282879797|ref|ZP_06288526.1| conserved hypothetical protein 7 4 Op 3 . - CDS 2968 - 3120 76 ## gi|282859115|ref|ZP_06268244.1| RHS repeat-associated core domain protein - Prom 3316 - 3375 3.8 - Term 3403 - 3443 8.9 8 5 Tu 1 . - CDS 3469 - 6051 2388 ## COG3525 N-acetyl-beta-hexosaminidase - Prom 6267 - 6326 2.0 9 6 Tu 1 . - CDS 6549 - 9638 3485 ## COG4409 Neuraminidase (sialidase) - Prom 9662 - 9721 6.1 + Prom 9655 - 9714 7.9 10 7 Tu 1 . + CDS 9813 - 10328 371 ## PRU_0190 hypothetical protein 11 8 Op 1 . + CDS 10442 - 11404 916 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 12 8 Op 2 . + CDS 11392 - 11871 257 ## PRU_0192 putative lipoprotein 13 8 Op 3 . + CDS 11822 - 12517 679 ## PRU_0193 hypothetical protein 14 9 Op 1 . + CDS 12634 - 13677 855 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis 15 9 Op 2 . + CDS 13753 - 14469 560 ## PRU_0195 cyclic nucleotide-binding domain-containing protein 16 9 Op 3 . + CDS 14496 - 17408 2432 ## PRU_2765 hypothetical protein 17 10 Tu 1 . - CDS 17389 - 17652 61 ## - Prom 17710 - 17769 3.5 - Term 17719 - 17764 0.6 18 11 Tu 1 . - CDS 17792 - 17911 84 ## - Prom 18071 - 18130 3.8 19 12 Tu 1 . + CDS 17892 - 20873 1811 ## PRU_2765 hypothetical protein + Term 21001 - 21049 -0.8 + Prom 21540 - 21599 4.2 20 13 Op 1 . + CDS 21623 - 23935 921 ## BDI_2894 hypothetical protein 21 13 Op 2 . + CDS 23945 - 24256 144 ## gi|282858463|ref|ZP_06267642.1| conserved hypothetical protein 22 13 Op 3 . + CDS 24253 - 25026 642 ## COG0566 rRNA methylases 23 13 Op 4 . + CDS 25051 - 25953 486 ## gi|282879811|ref|ZP_06288540.1| putative membrane protein + Term 25994 - 26020 -1.0 - Term 26130 - 26172 -0.7 24 14 Tu 1 . - CDS 26194 - 27333 869 ## COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein - Prom 27372 - 27431 3.4 + Prom 27871 - 27930 7.2 25 15 Op 1 . + CDS 27959 - 28858 500 ## COG0338 Site-specific DNA methylase 26 15 Op 2 . + CDS 28858 - 29583 440 ## Cpin_0646 HNH nuclease + Prom 29939 - 29998 5.0 27 16 Tu 1 . + CDS 30033 - 31412 790 ## BT_3500 hypothetical protein 28 17 Tu 1 . - CDS 31495 - 31629 83 ## gi|282879815|ref|ZP_06288544.1| hypothetical protein HMPREF9019_0348 + Prom 31634 - 31693 6.7 29 18 Tu 1 . + CDS 31726 - 32760 709 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Term 32886 - 32931 4.1 30 19 Tu 1 . - CDS 32960 - 33373 460 ## BVU_2895 hypothetical protein - Prom 33527 - 33586 8.2 + Prom 33450 - 33509 5.8 31 20 Tu 1 . + CDS 33544 - 34668 1092 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Prom 34679 - 34738 3.9 32 21 Op 1 . + CDS 34771 - 35631 765 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 33 21 Op 2 . + CDS 35633 - 36547 653 ## PRU_0837 hypothetical protein 34 21 Op 3 . + CDS 36548 - 38209 1367 ## COG0497 ATPase involved in DNA repair 35 21 Op 4 . + CDS 38267 - 39904 1283 ## PRU_0835 hypothetical protein + Term 39958 - 39998 8.2 - Term 39939 - 39993 12.4 36 22 Op 1 . - CDS 40003 - 40602 546 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 37 22 Op 2 . - CDS 40639 - 42420 1465 ## COG0481 Membrane GTPase LepA - Prom 42494 - 42553 3.1 Predicted protein(s) >gi|281306303|gb|ADEF01000006.1| GENE 1 2 - 233 88 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879794|ref|ZP_06288523.1| ## NR: gi|282879794|ref|ZP_06288523.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 15 77 1 63 63 103 100.0 3e-21 MEQFKLDFFRKDHEMVNINFITLSKKKCDDAFISFCLKYKIQKNERTNIFNIIQNEGHYI NFVNAEDAEFNLGLLIN >gi|281306303|gb|ADEF01000006.1| GENE 2 511 - 780 209 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|261879488|ref|ZP_06005915.1| ## NR: gi|261879488|ref|ZP_06005915.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] # 1 85 80 164 164 153 97.0 3e-36 MVDSLVLNEYNRYGVKFLLSKYCKKIHYADGIENIVLYNEHNINSKWTIIYLMEKNKYKY VKDDLTGHDIFVPSSINKLDNAPDWELSE >gi|281306303|gb|ADEF01000006.1| GENE 3 822 - 983 82 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCVVVDQITQKKINIREIALSLATISIYHKKVKLIFLLPLLEIKILFMFMNEL >gi|281306303|gb|ADEF01000006.1| GENE 4 1450 - 1806 162 118 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879795|ref|ZP_06288524.1| ## NR: gi|282879795|ref|ZP_06288524.1| hypothetical protein HMPREF9019_0328 [Prevotella timonensis CRIS 5C-B1] # 1 118 59 176 176 216 100.0 3e-55 MFKQIKDDIINAKPTNNYSNSYTPIIYVNVGNQNLCLNGINNQCWIKQSDRKYHPSILSN KTVYLLKWKSFYYNYLPYDILQLDKGIRQFGIPSDYKKDQINKIIKKKEMSKVLVRVK >gi|281306303|gb|ADEF01000006.1| GENE 5 2220 - 2666 177 148 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260591517|ref|ZP_05856975.1| ## NR: gi|260591517|ref|ZP_05856975.1| hypothetical protein HMPREF0973_00950 [Prevotella veroralis F0319] # 1 148 1 148 148 273 98.0 2e-72 MGNNEMIRNILHSILVIFVLASCQNKNDINKIVSNHWQQDSINCIVDFSSCFSFNWDICY YFSSKCSLEEINKDLGIQFNEFEDTSDRMIFVQDKRIIYIQDWYYIPEKIQTGIIFDHSI RKLKIKKGNAKFRIEKKHGMYLLIPIYK >gi|281306303|gb|ADEF01000006.1| GENE 6 2683 - 2889 195 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879797|ref|ZP_06288526.1| ## NR: gi|282879797|ref|ZP_06288526.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 68 1 68 68 131 100.0 1e-29 MARTRAANGNFKPNDDYKKMLFYYHPGHLGSSSYITNLNGEVSQHIEYVPFGEVFIDELE LTQKLNRN >gi|281306303|gb|ADEF01000006.1| GENE 7 2968 - 3120 76 50 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282859115|ref|ZP_06268244.1| ## NR: gi|282859115|ref|ZP_06268244.1| RHS repeat-associated core domain protein [Prevotella bivia JCVIHMP010] # 1 37 3 39 421 68 83.0 2e-10 MDYKKKYSEQLQAIKENYRTFDIPYNGQDNDDYVNGQVCPKEIVGCTRKR >gi|281306303|gb|ADEF01000006.1| GENE 8 3469 - 6051 2388 860 aa, chain - ## HITS:1 COG:VC2217 KEGG:ns NR:ns ## COG: VC2217 COG3525 # Protein_GI_number: 15642215 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Vibrio cholerae # 57 231 214 381 883 67 31.0 1e-10 MKQIYKISLAAVTAVLSLSTAMAQDTGFALSSQRKESQNILKVPGHKVNHQGIVINPTPQ KIEMNVGGQAALDVTSGVRLKDKTKDKKHVLAQDLNFLNLQRKGVNLTVSYASKKHNLPN VEGAYALQIDAKGIRITGHDDKGVFYAVQTLKQLMESPAAQGGKTLPCLSIVDYPTFPYR GVVEGFYGTPWSHKARLSLLDFYGKYKMNTYLYGPKDDPYHSAPNWRKPYPEKEREQIHD LVMAAQRNRVDFVWAIHPGKDIHWNEEDYQNLVRKFEMMYDLGVRSFAIFFDDIEGEGTN PMKQVELLNRLTHEFVQQKKDVSPLIVCPTDYSKLWANPSPQGALSIYGRALDPSIKVFW TGDVVCSDVTHETLNWVNQRIQRPAFFWWNYAVTDYVRHIVLQGPVYGLDTTVTPNEMCG LVSNPMEHAEASKLSLYSVADYTWNPKAYNAMDSWERGLQVVAPRSHEAYRTFAIHSADT ETGYRRDESWETETFRFNNYTPQQLEALYQEFDRIEKVPAQMQQANDNPALLKELQPWLL EFGRLGTRGKRTIDLMKQYKEGDLTDFWTGYVQNLMTLSERKAYEAHRSGTMKLQPFYEV AMQDLSEAFYQQISGRKPFVYRAVGSYPNLKTTLSQLMFDTDTTSYYTSTASQRTGEWIG VDLGCVKPVREVHILQGRNSVDDVDYFDHATLEYSADGNNWQPLLKELKGVYDVQWQGSE VMARYVRLRKLPSEKKNWTAVRLFEVNPVRQQYLGFKVDAGSQTEAALRAFDEQPTTAFH LSGRLSFDIKPGVSQYALLMRLPANGGVKVSQFDKRGKCIHTEQVTTNFYPFTPASRTTR VVIEGDAEIYEVVMKDAPRK >gi|281306303|gb|ADEF01000006.1| GENE 9 6549 - 9638 3485 1029 aa, chain - ## HITS:1 COG:Cgl1519 KEGG:ns NR:ns ## COG: Cgl1519 COG4409 # Protein_GI_number: 19552769 # Func_class: G Carbohydrate transport and metabolism # Function: Neuraminidase (sialidase) # Organism: Corynebacterium glutamicum # 196 436 80 313 399 69 30.0 4e-11 MNLKSLRLLWTFALLLALGWSTAHAADKVIRIQKSTGTWTKSNPAKTWAAQWTSNDVDPM LTLTCAANNMAYYDGNEIKLFTGNGSVKFSADYTLAVIPGYEIVSYEFSFSSEKAGQKIV VTPQGATELSSDDPTQWQAVQVTDIHAATATFNVKHATQTAAGFARLKNVLVTVAKTATP ANFHPLYITRPNEHPYRIPALACLKDGKLLAFSDYRPGGSDIGYGEVDIQLRTSTDHGAT WTDARTIANGKGTGSGLDYGFGDAAVVADRESNEVLMMCVAGHVPYQTANYQAGNPLPMV RYLSTDGGETWGNYTDVTAAVYGLFDGSKDGAVKSMFAGSGKLCQSSIVKHGTHYRVYMP VCARDGGNRVLYSDDFGATWKVLGGKDARPAPGGDEPKCEELPDGRVLLSSRTNGGRLFN IYTYTNHETGEGSWGEVAKSDANNRGTAAQSNSCNGEIMILPVKRNSDGKQMFLALQSVP FGPNRANVGIYFKALESLNDYFTPKAFASNWTGKKQISQMGSAYSTMVWQKDDKVGFFYE ESTYGADYTNVYKALTLEEITDNAFSYDATVKRPTEDANAIQYSDLTKVTQLLGHKGVGF PLADAESRELLAKIYDAPANYTKAQLEKAVQQFVEETNVEKPQNGLLYLVKFVGKDGKTY MVDYADGKLSAKPITEGQAPERSAGFKAHVLATGKVAFETMDGKFLCYPTQLPAPQDLTG YHVGGVTDELDEADNGLDLQKAIASDKVESTEALDRFGKFYICSKRGNRTDNQQEALGFW TLNTQANAFNNADVPFLNNQLTSLVVVERMVLPLGKQVTTLAEVDPNKAYALYNEHFTTY AVKKEGQTNVWVQGMVGDAGHSLANGDFAQPYNPSSAFGAWQLMKNDQGQWLLYNIGAKQ YARTPSNQSGTGPCTFVDEALPINVTELPNGGFAFNTGNNAQQFFCAAPQLADSPINVWT SSDSGSRWLLVENPNVQVDVPNSIQQTVAAKANRKTGIYNLKGQRINTDKLHQLPAGIYI VDGKKVVVK >gi|281306303|gb|ADEF01000006.1| GENE 10 9813 - 10328 371 171 aa, chain + ## HITS:1 COG:no KEGG:PRU_0190 NR:ns ## KEGG: PRU_0190 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 8 171 7 175 180 79 32.0 3e-14 MINVQTLIQLKAFARIDGLWLALLWTSSFACLMYPPLSILGNLLLLMTPVLMTWRVIKFR NYALDGSISYRRAFAYGCYMTFYASLIFAMVQCLYFQFLDNGHFVQLLNQSVEELKAIDT RNTDYWSNLQQSIEMMRSVSPIELAFMFMMQNLFIGTLTSTIVAIFGKKKK >gi|281306303|gb|ADEF01000006.1| GENE 11 10442 - 11404 916 320 aa, chain + ## HITS:1 COG:mlr7556 KEGG:ns NR:ns ## COG: mlr7556 COG0463 # Protein_GI_number: 13476277 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mesorhizobium loti # 3 308 4 301 326 250 41.0 2e-66 MDISVVIPLYNEEESLPELFSWIERVMQANAYSFEVIFVNDGSTDHSWEVIQRLSKQSEA VRGICFRRNYGKSPALYCGFKEAQGKVVITMDADLQDSPEEIPALYRMITKEGYDLVSGY KQKRYDPLSKTLPTKLFNATARKISGISNLHDFNCGLKAYRQEVVKNIEVYGEMHRYIPY LAKEAGFCKIGEKVVQHQARKYGSSKFGLNRFFNGYLDLITLWFLSNFGKKPMHVFGFLG SLMFLVGLIAVVILGAEKLYALSNGIPMRLITDSPYFFIALTTMLIGTQLFLAGFVGDLI SRSNPTRNDYQIEKTIRCEE >gi|281306303|gb|ADEF01000006.1| GENE 12 11392 - 11871 257 159 aa, chain + ## HITS:1 COG:no KEGG:PRU_0192 NR:ns ## KEGG: PRU_0192 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 155 1 166 169 125 43.0 5e-28 MRRIIFLLSVALGFTACSSINCPLNNTVVTSYKLMGSQPKLEDTLTIIAARSMGTDTVLL NRAVGIDSFILPISYAQPEDVFFFKITNKDGQMFRDTLRIAKDDQPHFESIDCPPAMFHR LKSVTCTHQTLDSVIINNENVNYDATNPHLYLYFKKYLY >gi|281306303|gb|ADEF01000006.1| GENE 13 11822 - 12517 679 231 aa, chain + ## HITS:1 COG:no KEGG:PRU_0193 NR:ns ## KEGG: PRU_0193 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 60 231 1 172 172 179 48.0 5e-44 MQRTHTYTSISKNICISVLLLLSTTVQAQIPKKIFEQPKDSTRFLRHVAVSADLVGPLQL LLSDYGQYEAAARVSLRNKYFPVVELGYGQADSEDVTTHLHYTCKAPYGRIGLDVNMLKN KDDDYRLYVGARYGYTSFKYTVNHPGITDPVYGTQLPFNLNDISNQYHWLEAVMGVDVKL WGPLRMGWSVRYKHRIASSANTEAGNPWYVPGFGKPKATPIGGTFLVTVEI >gi|281306303|gb|ADEF01000006.1| GENE 14 12634 - 13677 855 347 aa, chain + ## HITS:1 COG:VC2289 KEGG:ns NR:ns ## COG: VC2289 COG1477 # Protein_GI_number: 15642287 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Vibrio cholerae # 35 314 58 346 367 201 37.0 1e-51 MKITKSSIFRIVFLLFLIVGSIYIIRQQNTMPYQHNTGQIFGTTYHITYQSDKDLHREIL QRLQLVDQTFSTFNDESIISKINRNEPVKLNQMFIEVFDLAKTVSKDTHGAFDITVAPLV NVWGFGFKSGTPPTKAVIDSLRHLTGYEKVKLIGSKVRKQDPRIMLDCSAIAKGYGSDVV AQYLRSRDVENFMIEIGGEIVVQGNSDKRLPWKIGVTKPTDDSTQVNNELQTVLNVSNTA MATSGNYRRFYYKNGKKYAHTIDPKTGYPVQHNILSATVLANTCAKADAYATSFMVLGLE KTQQVLQHHPDLMVYLIYADGQGKNKVWYSPSLKKAIQGAENPSDRK >gi|281306303|gb|ADEF01000006.1| GENE 15 13753 - 14469 560 238 aa, chain + ## HITS:1 COG:no KEGG:PRU_0195 NR:ns ## KEGG: PRU_0195 # Name: not_defined # Def: cyclic nucleotide-binding domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 26 237 10 221 225 185 44.0 1e-45 MAHRTSTSNTPLPLDYHTEDAEAFHLLSQPLFQGLSQSDLLRIAETTPLSFAQHPQGECI AKESEACRQLTVLFKGSVEVTAEADDHGYSLTETLKAPLVIEPEHLFGLHQHYRRTYTTA EACNTLSVSKQHVITLTQEFMVFRLNLLNIICTQSQRLQRQPWHPQPTDLRQRIIHFFKD RSLRPAGEKVFKIKMVRLATELNASRLDISIALNAMQTDGLIKLTRGYITVPALERLT >gi|281306303|gb|ADEF01000006.1| GENE 16 14496 - 17408 2432 970 aa, chain + ## HITS:1 COG:no KEGG:PRU_2765 NR:ns ## KEGG: PRU_2765 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 13 969 11 943 967 265 25.0 1e-68 MNMKRLSILCWALLLFFTQALPQTAHHKKERTVTILGRVVDSFTHLCVLDAKITIMTSDS VMVDTCRTVTWNEEAIHPDAYFYLQEKLSEGTYIFKIEHPDYQTTYINHELLFKGRQSSM TLDDMPIQRKRMEDKEHTLDEVVVKSTKIKMVMKGDTLVFNAEAFNLPQGSMLDALIRQL PGATLNSHGEIFINGRKLDYLTLNGKDFFKKDNKTLIENLPSYTVKDLQVFEKSTEKSKA LGVDVEKKDYVMDIQLKKEYEKNFIANADIAGGTNSRYATKLFGLYFNPRLQMSVFANLN NVNEDRKPGEKGDWDPTKMPYGQVTQKTVGLNLATSNDKNTIKDNVSTSVSWQNSHDVSQ TASESFLNTGSNSYSRSMSESRSKDFETRLEHQFQMSKPFWLRVENDLTYRKSDNWSNLR AGSFKQDPAPWGDTQAVLDTLFTMPWSRRVQDAALNRQQNQSLGEGYSFQTSNRLYGSYP LKSGDNIFFHGSFNYNNTKRTAFEQYRLEYLQSATAKDQRDRYDDTPSHSYEYYASVNYR YQLPSGWTFLPEFSFNQQMKYTNNSKYRLDRLQEWQQQAHELGTLPSSRDALRRALDSNN SYQGYLKTQTQELSLNINYLKKSGKNSFDIGLYIPVQHEKQHLDYRSTALNTNISQQTWK TTANLNMGATYNQYSIWAYGQMRIVMPDLYSKIDRRDDSNPLAISLGNPNLKNTAIYFTM IHFADQHNRRFKWPTLDFGLNVQQNAIANGFTFNPTTGVYTYKPQNVKGNWAGKAGIYYN CPLDSAKYFTLDNKLEYSYNRNVDLTAVVGHTESVLSKVNNHWTRNELSLNYQKEGATCS LVGSLGWRNVNSKRENFHTINAYDFNYGIVGSYHFGFGLETGMDLKMFSRRGYDDPSFNT DDWVCNAYLSQSFCKGKLSAKLEAYDLFQQLKSMSYEVNGQGKTETCFNTIPHYVMLHLM YKLNISGKKK >gi|281306303|gb|ADEF01000006.1| GENE 17 17389 - 17652 61 87 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELSQIERHHHVTDIRTSVKLCQQNRILSCYFTVNRPLKISKIEKINRQTIDKNTLIFPV ILCAFYPPSLDFLRMRYCLSKLIFSFR >gi|281306303|gb|ADEF01000006.1| GENE 18 17792 - 17911 84 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKQWHMSLIFSNLVVVKILGSNYRMYNRYAKIVKILDL >gi|281306303|gb|ADEF01000006.1| GENE 19 17892 - 20873 1811 993 aa, chain + ## HITS:1 COG:no KEGG:PRU_2765 NR:ns ## KEGG: PRU_2765 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 52 992 26 943 967 266 25.0 3e-69 MCHCLLIFINLNKFRQRVMNIKMPKWTLFVLLSLLTLLPKQILAYQTTIMLPSTRNYTIH GRIVDSFTNLPISNVKLTLLSADSTVIDTCRTFIWNDKAVHPDSYFYMQKNLSEGKYIFK IEHPDYFTTFVNKEILFKGRNTNIDMQDIPIKKKGMEDKEHTLDEVVVKSTKIKMVMKGD TLVFNAEAFNLPEGSMLDALIRQLPGATLNSNGEIFINGRKLDYLTLNGKDFFKGNNKQL IENLPNYTVKNLKVFEKSTDRGQAMGVDIDKKDYIMDILLKKKYEKTLIANFDIAGGTNS RYAAKAFGLYFTPRLQLSVFSNSNNVNEDRKPGEKGDWDPTKLPNGQVIQKTVGLNAAVS NEKNTLENSMSTSFSWRDTHNNSQMIAESFLNGGNNFNRSISEVKSKNFIYDFQNNLKIS TPIYLKSTINLNYNKFDNWESARSARFNADPSPIGCTEAILDTIFSSSRNRLINDFGVNR LSTKTYGFGYSLKTFANVNAYKQLPSGDRISALIEGNYLNTKNSMFNNYQLKYLKNNAID DYRNRYDDTPSYSYNYRLGPQYTFVIPNGFRLFTGYQYQQKGSYRNNQKYRLDKLDGWQK ENHPLGSLPSSRDSLLLSLDANNSYKGYYISKQNSASLGFGYSKSKNHNNVFFNTNVSVG YKREKLDFRNSLLNTSVQQYNWISELSLNMGFTINKYGFYGTLTSKVETPNLYSKITRSD DSNPLAISLGNPNLKNSRNTNVNLSFSDNNNRRFKLPMAFININIHQNAIANGFTYNPIT GIYTYKPQNVRGNWSGNIGLYDTFPLDNKNYFTLINAIVYSYNHNVDLTGVTGQTESMLS KVNNHWLEDNLSLNYQKGGLTCSLVGEMKWRYANSRREKFSSIRTLDFNYGILGSYKFKL GLETGMDLKMFSRSGYSDPLINTNDLICNAYVSKSFFRGKLAAKLEGYDIFHQLKSINYE INGQGKTEKRFNAIPNYLMLHLMYKLNISGKKK >gi|281306303|gb|ADEF01000006.1| GENE 20 21623 - 23935 921 770 aa, chain + ## HITS:1 COG:no KEGG:BDI_2894 NR:ns ## KEGG: BDI_2894 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 769 1 771 775 233 26.0 2e-59 MKKNIALVILFIIYTYKAFAGDLLGMICNESNRPLEMVNVMIRSPKDNRVIAVTETSANG KFTIRTLNSGTYILKCTRLGYQDYNAEIKMKENENLDLGRLIMPQTSIQIDEVAVVANRN VFTTDKQSIYPSKLQVEQSTGGLELLKKLPIPLLDINPISRTISTLDPQGGVIVLINEMP SDANDIAILDPKRIKKVEVIRNPGMKYGSNLAMAVNIVLYNAEDGVSAGVNTSNSTKIIY GYNNLFGTYIHKNSQLTISQSENFQNSSNQISDDLRKYLLPTGDWQTIHIQTLSSRAVSF THGTTVKYNLTVPDKYVFQAIGYINSHRNPKNNRSDLISGDGLSGHMSETNIRDQYLSPA LNLYLKKNLPKNQTFMFNIVGTYISSNYDYSYSTDKSNFKSNYVVEGKKISAIGELRYSK NFQWGAIASGLRSFYGNTTNLYSGRTQSKPQMRNLNSDIYVQVEGRWKQFSGRTTLALND QCYAQNNEKYHKVTMSPQISLNYSLASNFSLGYGFNLVSRLPSLAHLNGAAIQLDVWERK IGNPLLQPFNHIENSLSATYYTPKFYGMISAVYASNKHAIMPSLIRSENLERISFDNIIR NERDMNQVALTAYLRYAMLNNKLVFSATGSYNYFNARSDLYTNKRGFFFGDLSIEGYIGR FSFSAGLRSRYNSLFAETVWFNEYTNSLSATYKYKNFSVGLTWEQPLQSSGTNNRIETKN DYAYKLVKNINREAGNHVLVTFSWRWDHGFKSKSQEADVDNRDTDSGVLK >gi|281306303|gb|ADEF01000006.1| GENE 21 23945 - 24256 144 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282858463|ref|ZP_06267642.1| ## NR: gi|282858463|ref|ZP_06267642.1| conserved hypothetical protein [Prevotella bivia JCVIHMP010] # 19 62 13 56 79 73 81.0 3e-12 MSNSSSHSDRNQSAIIKTKLSDKKTIQANQENPYMQYLLGLEKCTEKPVFVPEFFVFGSN RLLIGEFYLNLQRRDNVIDETTAMIDASRFAIYTNRFTIHTNI >gi|281306303|gb|ADEF01000006.1| GENE 22 24253 - 25026 642 257 aa, chain + ## HITS:1 COG:VC0803 KEGG:ns NR:ns ## COG: VC0803 COG0566 # Protein_GI_number: 15640821 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Vibrio cholerae # 1 256 14 255 257 166 38.0 4e-41 MISKAKLKYIHSLKSKKGRVAQGTFIAEGPKVVGDLLSTFQPTMMFATPHWLQDIHNQES LTHLQQMGVQIETVTNDELTKISCQQHPQDVLCVFEMRKSHLAFDPSRQLILALDDIQDP GNLGTIVRIADWFAIPTILCSENTADIYNPKVVQATMGSLARVNVVYLDLENYIRQHASE FPVYGTLLDGKDIYQENLGGHGLIVMGNEGNGISAAIRTFVNKPLYIPNFAKSANRAESL NVAIATAITCSEFRRRE >gi|281306303|gb|ADEF01000006.1| GENE 23 25051 - 25953 486 300 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879811|ref|ZP_06288540.1| ## NR: gi|282879811|ref|ZP_06288540.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1] # 1 300 1 300 300 516 100.0 1e-145 MEKELYKNRSISSCIKMAYLLFCSNVMTILRRNWLPLLAFAIMEGVVTAWLIQHGNSLLE DNRGTSFFVLSPLLSLLYVAAMVWYMGSTTNLLNENGFRCNLLRNLKLTVFIGLIFIVLF VGAIAWQLTTLQLIATGQEMQQTGTTIQMWIFPLCLLVCALLLLPLNYSYMNYVQAPKAR FKTHVIGGYFSGLRHFGYIFSTQLLFGVILFFLTILVAMPLYLLVFSHTLSQQGVLQGDV NTLPSYFPILLYGCSILTGFILIAIMTVGVYVNYYMYGAIVAKKKARRQRKEIQTKTSEG >gi|281306303|gb|ADEF01000006.1| GENE 24 26194 - 27333 869 379 aa, chain - ## HITS:1 COG:STM2567 KEGG:ns NR:ns ## COG: STM2567 COG4623 # Protein_GI_number: 16765887 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein # Organism: Salmonella typhimurium LT2 # 114 345 217 445 514 123 36.0 6e-28 MLLCACREEKVPVETPWGTTLGADSLASSDNFLLDDIVRNGELIVLTMRGPQTYYDYRGR GMGLQYLLCEKFAHSLGVSLRVDLCKDTAEMVNKLKQGDGDIIAFPLPIQKNVLVSAGPT TDSGKTKWAVRKDNEALADTLNKWFKPAFIAQVQQEESFLLSTRSVTRRVFSPMLNRSKG IISNYDHYFQLYAPVARWDWRLMAAQCYQESTFDPRARSWAGARGLMQIMPGTAAHLGLP MSQIENPEQNIAAAAKYLKELSAHFSDVRNVQERQYFVLASYNGGFFHVRDAMALTKKYG GNPYSWNHVSAYILKLSEPKYYLDPVVKYGYMRGAETYDYVNKIRARYAQYRGVAKGGLG GGFGLQTPREAKRKHRFHV >gi|281306303|gb|ADEF01000006.1| GENE 25 27959 - 28858 500 299 aa, chain + ## HITS:1 COG:XF1804 KEGG:ns NR:ns ## COG: XF1804 COG0338 # Protein_GI_number: 15838404 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Xylella fastidiosa 9a5c # 1 281 1 277 293 204 39.0 1e-52 MNGSVPHIVQYQGSKRNLAPQILPYFPQRFNRLIEPFAGMAAITIAVSRLNKAQLYHLND LNTPLVSVLEEAINNPQRLLDDYTRVWNEQLTFNEGSVAHYYKVRDDFNSGNQCAANMLY LLARCVKGSVRYSGNGQFNQSPDKRRKGVSPANLSKNIFRISSYLKNRTEFSSVDYREVL QMARPGDIVYMDPPYQGVCATRDNRYFSGIDYNEFVESLEDLNRRGIDYIISYDGSCGDK QYGNDLPNDLGLRKVMLNAGLSSQALLLGKKEVTFEALYLSANLQDVVQPTVHNQLLFT >gi|281306303|gb|ADEF01000006.1| GENE 26 28858 - 29583 440 241 aa, chain + ## HITS:1 COG:no KEGG:Cpin_0646 NR:ns ## KEGG: Cpin_0646 # Name: not_defined # Def: HNH nuclease # Organism: C.pinensis # Pathway: not_defined # 5 234 6 235 237 133 35.0 7e-30 MKYSKEILERLNSITDKRPATVIQHILKYGFITTEELENKYGYKHAPRAARDVRERGVNL VTYNVKSSEGKRIGAYKFGDPVFSDNKISKVAGRTALSEALKKALIDKHGSVCFIYLQPM EERLLQVDHRVPYEIGGEQDESDIDCYMLLSPSANRAKSWTCEHCPNWTIKDVELCENCF WAHPENYTHIAGNNERKIVITFTDNEIDDYEQLISLVGIDNAEQTIKDLVTSFINDHSNE D >gi|281306303|gb|ADEF01000006.1| GENE 27 30033 - 31412 790 459 aa, chain + ## HITS:1 COG:no KEGG:BT_3500 NR:ns ## KEGG: BT_3500 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 58 406 216 576 582 190 32.0 1e-46 MKKFTALLGILTITTLTFAQTPHSLPHILIEGNPGNEYTKCKYYFVENQNKDTIKLQAKI RWRGNTAKAFNKKSYAIKIIDDKGKGKDVSFLGMRKDNNWILDAMAIDKARMRNRVSFDL WNDFSNKSYIFNYDKKAINGTRGNFVEVYLNGEYNGIYCLTEKIDRKQLRLNKYNKDGVH GILYKADGFLYTGFWEVDQYDNSKMTWGGWDMKYPELDKGESIDWKPLYDATSFILNSTD KEFDEKVSNVFDLPVWADYYLFANVIMAFDNSAKNVFTYIYDNKTSQKLGFAPWDLDATW GRNHIGKLLSAQKKVPFHKLYSRLLKSEKINFMENIAHRYLELRKTILSEKALKERFHNY FQLFKETGAAQRETEKWNGVNGIEIDFDKEESYINKWIEERLTYLDEKVKVFSTKINTFE EEKDISNHSNIYTLEGIKVNEKDLKPGIYIKNKKKILIK >gi|281306303|gb|ADEF01000006.1| GENE 28 31495 - 31629 83 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879815|ref|ZP_06288544.1| ## NR: gi|282879815|ref|ZP_06288544.1| hypothetical protein HMPREF9019_0348 [Prevotella timonensis CRIS 5C-B1] # 1 44 1 44 44 76 97.0 5e-13 MSKNSLILVLQKKQENPTIDMAKIQIKSERLTPFGGLFSGRGAI >gi|281306303|gb|ADEF01000006.1| GENE 29 31726 - 32760 709 344 aa, chain + ## HITS:1 COG:HI0470 KEGG:ns NR:ns ## COG: HI0470 COG0079 # Protein_GI_number: 16272418 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Haemophilus influenzae # 3 343 17 365 367 178 32.0 2e-44 MKTLEQLIRPHLRKLNPCTSIEEQAPLAENVIRLNANENPYNKPLNRYPDPLQLELKKTL SALKKIPTDNIYLGNGSEEAIDLVYRIFCEPKVDNVVAIAPTRMRYKRLAEINNIWYKPV LLDTDFQILPDKLLHACDQHTKVVWICSPNDPTGKPIQRDAIHKILTLFDGIVVVDESYI DFSQQPSIRHELKKYSNLIVLDTMSTAYGCAALRLGMAYATKEIIELFNNIKYPFNISSL AQKQAIETLKDSFEIDKWVSTIVQERARMLHAFSVLPECTQVYASEANFFLAKMKDAGAI YQYLREKGISVYDCSHLPLCENCIRVTIGSKTENNLLLAALRQY >gi|281306303|gb|ADEF01000006.1| GENE 30 32960 - 33373 460 137 aa, chain - ## HITS:1 COG:no KEGG:BVU_2895 NR:ns ## KEGG: BVU_2895 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 102 1 97 125 106 54.0 2e-22 MELQGKVIAETPERSGTSARGDWKAKDFVIETHEQYPHKMSFSVFGEERLQRFNIQVGQE VLVSFDIDAHEHNGRWYNNIRAYDVRQVDPASLGVQGAPVPPPMGTTDTPATGTNQSQAP FPPQPATTEESTDDLPF >gi|281306303|gb|ADEF01000006.1| GENE 31 33544 - 34668 1092 374 aa, chain + ## HITS:1 COG:TM0262 KEGG:ns NR:ns ## COG: TM0262 COG0592 # Protein_GI_number: 15643032 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Thermotoga maritima # 1 372 1 365 366 138 26.0 2e-32 MRFTLSSSALNNRLQTLSKVINLKNSLPILDCFLFDVANNELKITASDSENVMQTSVSLD ECDGNGKFAVPNRTILDAVKELPEQPLTFDVDTEHLTIKILYQNGVYNFTAQNAAEYPQT SEIPDGATVVTIGADVLNNNINRSLFATAQDELRPVMNGIYFDLTPEGLAIVASDGHKLV RNKNFEIKSDTPASFILPKKPATLLRTVLTKGEGDVVIKFDNRNAEIRYEGGSLSCRLIE GKYPNYNSVIPQDNPNQLNVDRKGLLGALRRVLPFASESSQLIRLHLETGKLELSSEDVD FATSAKEQIVCDYTGQTMSIGFKGSSLTDILTNLDSDEVTIQLADPSRAGLIIPSTQPEH QEVLMLIMPMLLND >gi|281306303|gb|ADEF01000006.1| GENE 32 34771 - 35631 765 286 aa, chain + ## HITS:1 COG:NMB1451_1 KEGG:ns NR:ns ## COG: NMB1451_1 COG0847 # Protein_GI_number: 15677307 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Neisseria meningitidis MC58 # 3 114 24 133 177 82 41.0 1e-15 MKLNLKKPLIIFDLETTGLDLVNDRIIQISYIKVLPNGEEERESIFVNPEKPIPHEVIEL TGITNEDVANAPKFKEIAAHLQNQFKDSDIAGFNSNHFDVPLLAEEFLRAGIDFDFSKCN LIDVQTIFHKMERRNLAAAYKFYCGRKMEEDFQAHKANEDAEATYRVLLGQLERYDPDKA EEKERALPNDMQYLANFSKTNDAVDFAGRIVWREQKDSNGKVMTHEDGSPVRVEVFNFGK YKGKTVSEVLRQDPGYYSWMLSNDFTNNTKQVLTRIRLREFNKHNQ >gi|281306303|gb|ADEF01000006.1| GENE 33 35633 - 36547 653 304 aa, chain + ## HITS:1 COG:no KEGG:PRU_0837 NR:ns ## KEGG: PRU_0837 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 9 304 6 301 301 399 66.0 1e-110 MRTIRTIICLLLFCTCCTKRACGQELNAKVRINHSQIQGTDQRIFENLEKTLNTFINDRQ WTHLHFKKIERIPCNFNITVTKYDQATNMFTCKALIQANRPVYNSAYTSTLYNNTDNDFN FEFAEFDQLKFNEESIDNQLTALIAYYAYLIIGINLDSFALMGGDDILQRCLRLTNNAQN LIFTGWKSFDDSRNRFAIINDYMDSAMSPFRKLQYDYYRKGLDEMATNAERGRTNITTAL QEDLKKSRENRPLSMLPQIWTDYKRDELANIYKGKGTQKEKEAVYDILFSINASQNEAWE KIKE >gi|281306303|gb|ADEF01000006.1| GENE 34 36548 - 38209 1367 553 aa, chain + ## HITS:1 COG:PA4763 KEGG:ns NR:ns ## COG: PA4763 COG0497 # Protein_GI_number: 15599957 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Pseudomonas aeruginosa # 1 552 1 554 558 308 35.0 3e-83 MLKQLYIQNFTLIDEMNILFHPGFSVITGETGAGKSIILGALGLLKGNRADTKQIRQGEE RCVIEAHFDIRQYDLKDFFLENDLDDDPHDCILRREININGKSRAFINDTPASLSVMKDL GERLIDIHSQHQNLLLNKEDFQLHVVDILTKDEDTLRKYQESYQKYKKEQTKLEEMIAKV SKDQENEDYLRFQLQELSDAALSEGEQEILEQEISTLEHAEEIKSALYLSQNLISNESNG IIETLNQVSQQLQKIEQIYTPVQEISQRMESCYIEMKDLLQEITAQGEQVSYNPQQLEQS QARLDTINSLEHKYHVASIAELIAYQQKIQEQINLLDHSDEEIQKQKDIVAKLLDNCTQQ AEKLTTIRKKAAKTIESEMKARLVPLGIPKINFKVDIKPKELSSNGKDSVSFLFSANTNS PLSPVSQVASGGEIARVMLSLKAMISGAVKLPTIIFDEIDTGVSGSVAEKMAHIMDEMGN NHRQVISITHLPQIAALGKNHYKVSKTETPNGTISNMTPLNEQQRIEEIAQMLSGSNITK AALANARELLNVN >gi|281306303|gb|ADEF01000006.1| GENE 35 38267 - 39904 1283 545 aa, chain + ## HITS:1 COG:no KEGG:PRU_0835 NR:ns ## KEGG: PRU_0835 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 11 545 19 553 553 380 40.0 1e-103 MATFSVTYVHGQSKQVKKAAASIFSLTTFKTDGTLLASTNGVFISDNGEAISAFYPFVGA DSAVVIDTNGNALPVDVIIGANELYDVCKFKVNGKTTPIKIASTPSNNGEKVWMLGYSIK NQDAKQVPIQKTELFMDKYTYYIFSSETPENMEGCPFVNAKGELIGILQHANHSEGTHAV DAHFMKDMQINNGLSLADPVLRQTTIRTQLPAKEEDALVTLMMASEQNKKNYLKYIQDFK RLFPHAVDGYAAQARQYANKKEFAKAATEMETAIQNVHKKDAAHAEYAKIIFHQQLFQPD STYLAWSLDKALAEAQKAYEINPLPAYQHQQAQINYSKGNYQKAYDMFIALTKTNLRSGE LFYEAAQAKAQLKANQAEILSLLDSAVAACPQPLTPIAAPFVLARGAAYDQAGDYKKAIM DYNRYDTLMLGRANHEFYYTRFNCNVKLRRYQQALNDIAHAAVLNRQEPTYLAEMASLQL KVNYIDDALKTAELCIGIAPNYPDIYLIKGLALIQKKQKKLGIEAFEKAKQLGDKRAQDY IDKYK >gi|281306303|gb|ADEF01000006.1| GENE 36 40003 - 40602 546 199 aa, chain - ## HITS:1 COG:all4541 KEGG:ns NR:ns ## COG: all4541 COG0664 # Protein_GI_number: 17232033 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Nostoc sp. PCC 7120 # 26 192 19 184 193 68 28.0 6e-12 MKEPVNTPRDIARELARKYSTMTHEELDALESILVPMKFAKGEMILAEGEICQCIYYLDK GLIRQFYFKNDKEVTEHLGADNTIFMCIESLFKEEPSHLQVEALEASVIYALPKEELEKV ALHNVNIQMMYRKILEESLIISQIHADLVRFETAQNRYKRMCKLYPQVVFRAPLTYVANY LQMTPETLSRVRTSMLMED >gi|281306303|gb|ADEF01000006.1| GENE 37 40639 - 42420 1465 593 aa, chain - ## HITS:1 COG:BH1342 KEGG:ns NR:ns ## COG: BH1342 COG0481 # Protein_GI_number: 15613905 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Bacillus halodurans # 2 593 11 605 609 717 57.0 0 MNRIRNFCIIAHIDHGKSTLADRLLEYTNTVQVTGGQMLDDMDLEKERGITIKSHAIQME YQYEGENYILNLIDTPGHVDFSYEVSRSIAACEGALLVVDATQGVQAQTISNLYMAIDHD LEIIPVINKIDMPSAMPEEVEDEIIELIGCERSDILHASGKTGQGIEEILKAVVERVPHP VGDTDAPLQALIFDSVFNSFRGIIAYFKIENGSIKKGDKVKFYNTGMEYDADEIGILKMN MVPKQELSTGEVGYIISGIKDAKEVKVGDTITHVARPCAQAISGFQEVKPMVFAGVYPID PNDYENLRASLEKLQLNDASLSFLPESSIALGFGFRCGFLGLLHMEIVQERLDREFNMEV ITTVPNVSYMVYDKHGESKEVHNPSGLPEQTMIEHIEEPYIKATIITDANYIGPIMTLCL DKRGELIKQEFISGNRVELHFMLPLGEIVIDFYDKLKSISKGYASFDYHVDSFRPSKLAK LDILLNGEPVDALSTLTHQDNAVTLGRKMCEKLKDLIPRQQFDIAIQAAIGGKIVARETI KCVRKDVTAKCYGGDVSRKRKLLEKQKKGKKRMKQIGNVEVPQKAFLAVLKLD Prediction of potential genes in microbial genomes Time: Sat May 28 06:15:33 2011 Seq name: gi|281306291|gb|ADEF01000007.1| Prevotella timonensis CRIS 5C-B1 contig00027, whole genome shotgun sequence Length of sequence - 16860 bp Number of predicted genes - 14, with homology - 10 Number of transcription units - 12, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 675 583 ## Lm4b_02044 membrane associated lipoprotein + Term 701 - 757 14.4 - Term 692 - 742 13.7 2 2 Tu 1 . - CDS 765 - 2411 1714 ## COG3119 Arylsulfatase A and related enzymes - Prom 2629 - 2688 4.3 + Prom 2538 - 2597 5.7 3 3 Tu 1 . + CDS 2653 - 3936 1139 ## COG2873 O-acetylhomoserine sulfhydrylase + Term 3984 - 4032 5.5 - Term 3974 - 4018 2.2 4 4 Tu 1 . - CDS 4075 - 4689 529 ## gi|282879830|ref|ZP_06288558.1| putative lipoprotein - Prom 4712 - 4771 2.8 + Prom 5867 - 5926 3.2 5 5 Op 1 . + CDS 5951 - 6415 712 ## PRU_2778 putative DNA-binding protein 6 5 Op 2 . + CDS 6441 - 6548 147 ## + Term 6688 - 6725 5.4 7 6 Tu 1 . - CDS 7478 - 8935 1014 ## COG3666 Transposase and inactivated derivatives - Prom 8956 - 9015 4.0 8 7 Tu 1 . - CDS 9931 - 10170 104 ## - Prom 10265 - 10324 4.6 + Prom 10166 - 10225 3.3 9 8 Tu 1 . + CDS 10317 - 11006 726 ## COG1720 Uncharacterized conserved protein 10 9 Tu 1 . - CDS 11057 - 11983 1012 ## COG1242 Predicted Fe-S oxidoreductase - Prom 12019 - 12078 3.5 + Prom 11963 - 12022 3.4 11 10 Tu 1 . + CDS 12049 - 14253 2150 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases - Term 14309 - 14348 -0.9 12 11 Op 1 . - CDS 14501 - 14767 125 ## 13 11 Op 2 . - CDS 14840 - 16162 1179 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 16336 - 16395 8.5 14 12 Tu 1 . - CDS 16481 - 16858 71 ## Predicted protein(s) >gi|281306291|gb|ADEF01000007.1| GENE 1 1 - 675 583 224 aa, chain + ## HITS:1 COG:no KEGG:Lm4b_02044 NR:ns ## KEGG: Lm4b_02044 # Name: not_defined # Def: membrane associated lipoprotein # Organism: L.monocytogenes_Clip81459 # Pathway: not_defined # 1 153 301 449 690 140 50.0 5e-32 TNFDTANVTDMSGMFSDCSSLVSLNLTNFYTAKVTDMSFMFYNCKSLASLNLTNFYTANV TRMHVMFYNCSSLKSLDLTNFYTEKVTNMYNMFYNCKSLASLNLTNFNTEKVTDMSEMFN NCRSLTTIYCNDDWSVGGKVKDHSGMFIGCPNLRGEGAAYDSSKTGIEMANPTTGYFTAK TNGIDHVKAAGKVGDGKIYDLSGRQVSKNYKGVVIMNGRKILQR >gi|281306291|gb|ADEF01000007.1| GENE 2 765 - 2411 1714 548 aa, chain - ## HITS:1 COG:PM0598 KEGG:ns NR:ns ## COG: PM0598 COG3119 # Protein_GI_number: 15602463 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Pasteurella multocida # 40 543 2 452 467 106 23.0 1e-22 MPHYSLPGSLLLLALQATAQNHQRPNILYIMSDDHAYQCISAYGSKVFRQTPTPNIDRIA REGMRFDRAFVENSISTPSRACLITGLYSHQNGQRQLAEGIDTTKTFFSELLQQVGYQTA VVGKWHMICNPKGFDYYQILDDQGPYFNPDFRSNRTHNKYVREQGYTTELITKHAIEWLD SRDKQKPFCLMVHHKAPHRNWMPAIQNMGMYDNVTFPLPHSWNDDFSTRGSATRTQRMDI GRDMTLQSDLKVDTKHLDNPDGSRVFGEWYRLNEEQKPAIQQYYTQRSRDFAAANLQGEA LRQWKYQTYLRDYMAVIHSVDESVGELLNYLDKNGLLDNTIVVYTSDQGFYMGEHGWFDK RFMYEESFRTPLVVRYPKEIKPGSVSHQLVQNIDYAPTFLDYAGVKKPKEMPGRSLKPLF RADSTRWRHDLYYHYYDYPAWHMVRKHDGVRTERYKLVHFYGKGSERAVAENKYQRIPGT REYNGYMGMLRSGYIGNDPDINYDELYDLQTDPLEHHNLIDDPRYAKVKKQLQRKLDNYR KKLKIDEY >gi|281306291|gb|ADEF01000007.1| GENE 3 2653 - 3936 1139 427 aa, chain + ## HITS:1 COG:PM0738 KEGG:ns NR:ns ## COG: PM0738 COG2873 # Protein_GI_number: 15602603 # Func_class: E Amino acid transport and metabolism # Function: O-acetylhomoserine sulfhydrylase # Organism: Pasteurella multocida # 8 424 4 418 422 495 54.0 1e-140 MEKNLKRATLCIRGGWEPKNGEPVEPPIVQSTTFKYDNSEEMAQLFDLKKEGYFYSRLQN PTNDVVAKKIAQLEGGVGCLLTSSGQAANFFAVFNICEAGSHIVASTEIYGGTYNLFGVT MKKMGIDCTFVNPEASDEEIQQAFRPNTRVMFGETISNPGCHVLDIEKFARIAHRNGVPL IVDNTFATPVNCRPFEWGCDIVTHSTTKYLDGHAATVGGAVVDSGQFDWMAHAEKFPGLC TPDASYHGLTYTKAFGKMGYLTKLVAQLMRDLGSIPSPHNSYLLNLGLESLHLRMAQHCR NAQQIAEFLEQQEQVAWIHYCGLKNDAHYSLGQKYLPNGSCGVIAFGLKGDRDTAIRFMD SLRLINIATHVADSRTCVLHPASHTHRQLTDEQLRASGIDPTLIRLSVGIEDVTDLLADI QQALAKC >gi|281306291|gb|ADEF01000007.1| GENE 4 4075 - 4689 529 204 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879830|ref|ZP_06288558.1| ## NR: gi|282879830|ref|ZP_06288558.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 204 1 204 204 406 100.0 1e-112 MKKYFKTSWASLFVVGCLAFSLTACLNENEDNTKKITKEEVQQAYRTVAGTHTGKLVFPL SYPLTASTKTDSLDISWDVTSDSTLLIKQMPAKAFVPSVQDNDVKNLLMKAKPQDLKCNI GFYSLMPVAFVMQPKILEYQVENNGKQSKIEVLFYFNVRGAAGVYNVGKKRFLAQLVGGA VRVDGQLKAEFPHGLYLQLIEQKK >gi|281306291|gb|ADEF01000007.1| GENE 5 5951 - 6415 712 154 aa, chain + ## HITS:1 COG:no KEGG:PRU_2778 NR:ns ## KEGG: PRU_2778 # Name: not_defined # Def: putative DNA-binding protein # Organism: P.ruminicola # Pathway: not_defined # 1 144 1 143 174 145 52.0 6e-34 MAVMYKLYQNNKKDSKTKGKWYARAIHTQMTEADVLAERIQRNCTVKRSDALAVLSELVE VMQDELQASHVVKLNGFGLFKIGMRTKPADTAAKFNVSENVVNFRVNFIPEMKGGGKGMK RSRKFLDKLSVQEAPKNAVDTTKPVTPASPSTNG >gi|281306291|gb|ADEF01000007.1| GENE 6 6441 - 6548 147 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNTNWKLIIKLIITIATAVLGILSQQDHDVTDER >gi|281306291|gb|ADEF01000007.1| GENE 7 7478 - 8935 1014 485 aa, chain - ## HITS:1 COG:MA3799 KEGG:ns NR:ns ## COG: MA3799 COG3666 # Protein_GI_number: 20092595 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 241 481 5 234 243 94 30.0 3e-19 MLQQQQTISFSDYSSLYDLIIPKDNLLRQIKNLVDFSFVYQELKDKYCHDNGRTAESPIR MFKYLLLKVIYNISDVDVVERTRYDMSFKYFLDLTPEETNLINPSSLTKFRRLRLKDVEL LDLLIQKTVSIAIELGVLKSKTIIVDATHTLARSNPISAAKNLEYYSKAVIKVVQSVDNS IELPELPKEKKYSSIMHAAKALVLAVDSNTVTANIPVVKERLNMLKETISDAETRGVTSK DEDARTGHKTANSSFFGYKTHIAMSDERIITAATVTSGEKGDGQQLPKLVKKTEDAGMEV DFIVADTAYSSKENLKMAKENNMHLSARLSSVIDGNRTNKLPFEYNKDADLYVCPAGHLA KRKEKNNRKEGKCHRNSSVTYYFDVEKCKVCPLREGCYKQGAKTKTYMVTIKSDEQLEQI EYQKTEEFISLQRKRYKIEAKNSELKNVLGYDRALSYGLSCMEMQGALTIFAANVKRILK LKQSA >gi|281306291|gb|ADEF01000007.1| GENE 8 9931 - 10170 104 79 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLVRSFLLLFQSANNLIHFYPGRCPGLISYWAFSPSLQRANILFKVKQQNFKPNEATEVI FLIIATEGHGTTRTCRKIT >gi|281306291|gb|ADEF01000007.1| GENE 9 10317 - 11006 726 229 aa, chain + ## HITS:1 COG:HI0510 KEGG:ns NR:ns ## COG: HI0510 COG1720 # Protein_GI_number: 16272454 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Haemophilus influenzae # 1 229 1 237 239 158 39.0 7e-39 MNDEFVLRPIAYFHSPFASKFGIPKQSGVVPQLAGTVVFESAFRDVHALRGIEGFDYLWL VWKFSANPHDATHLLVRPPLLGGNEKVGVFASRSPFRPNPIGLSSVRLQRVEWESECGPV LHVLGGDLMDGTPIYDIKPYLPFTDSHADARSGFTDLSKLKHLDVRMPAEFSSAFTAEER QTLLAILALDPRPAYHAEDTKTYGMPFADKEVKFRVIGGKTVEVVSVER >gi|281306291|gb|ADEF01000007.1| GENE 10 11057 - 11983 1012 308 aa, chain - ## HITS:1 COG:aq_632 KEGG:ns NR:ns ## COG: aq_632 COG1242 # Protein_GI_number: 15606062 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Aquifex aeolicus # 2 302 7 310 317 231 39.0 1e-60 MEQLYRDFGSWIREQFPFRVQKISIDAGFTCPNRDGSIGTGGCTYCNNHTFNPSYCDPHQ RITDQLEEGKRFFARKYPDMKYLAYFQAYTNTYGSMASLRSMYEEALRVEDVVGIVIGTR PDCMSEELLDYLEELNRKTFLLVEYGVETANDDTLRRIRRGHTFAESQHAIERTHQRGIR TGAHIIVGLPGESASETIAQAPLISALPIDILKIHQLQIIQHTQLAREYREKPFHVYTVD EYMDVMIGYLEQLRPNLVIERFVSQSPPQLLIAPQWGLKNYEFTEKLCKRMREQHTFQGR RYEETSIC >gi|281306291|gb|ADEF01000007.1| GENE 11 12049 - 14253 2150 734 aa, chain + ## HITS:1 COG:YHR028c KEGG:ns NR:ns ## COG: YHR028c COG1506 # Protein_GI_number: 6321817 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Saccharomyces cerevisiae # 95 712 148 791 818 264 29.0 4e-70 MKKMMSCALILLMALTTAKATEKITLKDIADGAFAAERLTGIRPIPGTDQYASISKDGQR IVQYSFKTGKQTAVLFDVKHTMGSTIDSFDGYELSPDGTKMLIQTATERIYRRSFKANYY IYTVASTKLEPLSEGGKQQVPTWSADGKQIAFVRNNNLHLIKLLYDNAESQVTKDGRFNE IINGIPDWVNEEEFGTNRSFCFNADGTKICWIKYDESKVKSYSLQLFKGSHPTQMQYDEY PGLYTYKYPKAGQDNAQVSVWSFDVKSHQTRQLQVPLEADGYIPRIKPTNDPNRILVYTM NRHQDELNLFAVNPSSTVATLLIKEKVPNYVKEEVMEGIKIGENTLLLPSDRDGYMKGYL YNMNGQLLRTIGNGKYDITAFYGYDEKTGDVYYQAAALNPHDRQIFVSHRNGKEERLTLQ EGWNEALFSGDYQYFINTWSDYDHPYVYTVRDRKGKVLSTRIDNRALLAKTAKYGWTPKE KFSFTTSEGVTLDGWMVKPANFNPSHRYPVILFQYSGPGSQQVVNAWKAGSMGQGGAFDY YLAQQGFIVVCVDGRGTGGRGAAFEKVVYQRLGDLESKDQVETALWLGKQSFVDKERIGI WGWSFGGFNTLMSMSEGRGVFKAGVAVAPPTDWRFYDTIYTERYMRTPKENPDGYALNPI GRASQLQGALLICHGLADDNVHPQHTFEYSDALVQADKDFREIYYTNRNHSIYGGNTRHH LMRQIAQFFQHELK >gi|281306291|gb|ADEF01000007.1| GENE 12 14501 - 14767 125 88 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTGRSPKRNTAQGNTLGMSLLTNWRAVSATGVSEILVRSFLLLFQSANYLIHCYPGRCPG LIFLLGFQPVFTACKPFVQGKTTEFQAK >gi|281306291|gb|ADEF01000007.1| GENE 13 14840 - 16162 1179 440 aa, chain - ## HITS:1 COG:FN1101 KEGG:ns NR:ns ## COG: FN1101 COG1373 # Protein_GI_number: 19704436 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 3 437 23 457 470 369 44.0 1e-102 MKIRRDIIDTFRRWKEETDRKPILLKGARQIGKTWAMEAFGKEEFDYCAKFDFDRQPELR SVFQTSKSPERILKELSLYTEVPIVAGKTLIIFDEIQECEEALNSLKYFYEDAPTYHVIA AGSLLGVAVKRRSMTVPVGKVSIMRMYPITFREFLRAADEKTFSYVENLHEASHLPEIVL NKLKTEYRRYLVCGGMPEAVISLLGNKGMEAVEKVQQDILDLYELDFAKYATPREIPRIH AIWRSLPSQLAKENRKFIFKIVKPGARSKDYEDALLLLEDAGMIYRVFNITKPGLPISAY ADPSAFKVYACDCGLLRRLARLPATVILNANANYTEFKGSMAENAILQSLMPLLNDDIPY YWSPDSRAEIEFVIQWGERIIPIEVKAENCVSGRSLSVYNERYHPQKRIRFSFLNLQYNE GLLSCPSPLADWFYRLLPNE >gi|281306291|gb|ADEF01000007.1| GENE 14 16481 - 16858 71 125 aa, chain - ## HITS:0 COG:no KEGG:no NR:no SQCNVQQPWLQARTGRSPKRNTAQGNTLGTSVPTIQRAVSATGASEILVRSFLLLFQSAN YLIHCYPGRCPGLISYWAFSPSLLRVNSLSKIKQQNFKPNETTEVLFFIVATEKHGTTRT CRENS Prediction of potential genes in microbial genomes Time: Sat May 28 06:16:23 2011 Seq name: gi|281306232|gb|ADEF01000008.1| Prevotella timonensis CRIS 5C-B1 contig00019, whole genome shotgun sequence Length of sequence - 64948 bp Number of predicted genes - 59, with homology - 54 Number of transcription units - 31, operones - 15 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 14 - 73 3.0 1 1 Tu 1 . + CDS 100 - 489 377 ## BT_1085 hypothetical protein + Term 514 - 557 7.0 - Term 555 - 593 4.1 2 2 Op 1 . - CDS 775 - 1047 119 ## 3 2 Op 2 . - CDS 912 - 1166 305 ## gi|282879840|ref|ZP_06288567.1| conserved domain protein 4 2 Op 3 . - CDS 1231 - 1386 205 ## gi|282877503|ref|ZP_06286322.1| conserved domain protein - Prom 1412 - 1471 8.2 + Prom 1457 - 1516 6.7 5 3 Tu 1 . + CDS 1546 - 3339 1596 ## COG4412 Uncharacterized protein conserved in bacteria 6 4 Op 1 . - CDS 3587 - 4255 531 ## COG0325 Predicted enzyme with a TIM-barrel fold 7 4 Op 2 . - CDS 4323 - 4820 603 ## PRU_1298 hypothetical protein - Prom 4858 - 4917 6.2 + Prom 4789 - 4848 7.3 8 5 Op 1 . + CDS 5009 - 6256 1314 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component + Prom 6327 - 6386 3.0 9 5 Op 2 . + CDS 6487 - 8199 1401 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) + Term 8267 - 8301 2.1 - Term 8321 - 8354 -0.8 10 6 Tu 1 . - CDS 8356 - 8736 485 ## COG2033 Desulfoferrodoxin - Prom 8760 - 8819 10.0 - Term 8932 - 8967 3.5 11 7 Op 1 . - CDS 9124 - 9537 557 ## PRU_0460 hypothetical protein - Prom 9558 - 9617 2.1 12 7 Op 2 . - CDS 9628 - 10983 1211 ## COG1295 Predicted membrane protein + Prom 10902 - 10961 1.7 13 8 Tu 1 . + CDS 10998 - 11240 68 ## + Prom 11582 - 11641 5.4 14 9 Tu 1 . + CDS 11869 - 13320 1718 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 13372 - 13422 14.4 - Term 13485 - 13526 -0.8 15 10 Tu 1 . - CDS 13540 - 14427 719 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase - Prom 14448 - 14507 4.9 - Term 14474 - 14510 1.3 16 11 Op 1 . - CDS 14594 - 15943 864 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 17 11 Op 2 . - CDS 15998 - 17182 586 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative 18 11 Op 3 . - CDS 17175 - 17825 500 ## PRU_0905 3'-5' exonuclease - Prom 17846 - 17905 6.8 + Prom 17698 - 17757 4.7 19 12 Op 1 . + CDS 17929 - 20397 2583 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 20 12 Op 2 . + CDS 20412 - 21047 542 ## PRU_0907 hypothetical protein 21 12 Op 3 . + CDS 21093 - 22643 648 ## PRU_0908 prophage PRU01 putative membrane protein - Term 22382 - 22430 1.3 22 13 Tu 1 . - CDS 22640 - 23845 1123 ## COG1760 L-serine deaminase - Prom 23870 - 23929 8.5 + Prom 23776 - 23835 6.9 23 14 Tu 1 . + CDS 23993 - 24658 448 ## COG1285 Uncharacterized membrane protein + Term 24873 - 24923 9.2 - Term 24859 - 24911 14.2 24 15 Tu 1 . - CDS 24961 - 25401 351 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 25435 - 25494 4.2 25 16 Op 1 . - CDS 25519 - 26889 1372 ## COG0124 Histidyl-tRNA synthetase 26 16 Op 2 . - CDS 26906 - 28180 1249 ## COG0104 Adenylosuccinate synthase 27 16 Op 3 . - CDS 28185 - 28664 211 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 28 16 Op 4 . - CDS 28735 - 29343 533 ## PRU_0988 hypothetical protein 29 16 Op 5 . - CDS 29333 - 31309 1611 ## PRU_0989 M49 family peptidase (EC:3.4.14.4) 30 16 Op 6 . - CDS 31331 - 31807 485 ## PRU_0990 AraC family transcriptional regulator - Prom 31882 - 31941 4.3 - Term 32109 - 32151 1.3 31 17 Op 1 . - CDS 32165 - 32728 530 ## COG0424 Nucleotide-binding protein implicated in inhibition of septum formation 32 17 Op 2 . - CDS 32771 - 33289 479 ## COG1778 Low specificity phosphatase (HAD superfamily) - Prom 33310 - 33369 5.3 + Prom 34094 - 34153 6.8 33 18 Tu 1 . + CDS 34244 - 34384 70 ## + Term 34402 - 34434 4.0 - Term 34389 - 34421 4.0 34 19 Tu 1 . - CDS 34473 - 35780 969 ## PRU_1441 hypothetical protein - Prom 35886 - 35945 9.4 + Prom 35805 - 35864 6.3 35 20 Op 1 . + CDS 35908 - 37515 1325 ## COG0504 CTP synthase (UTP-ammonia lyase) 36 20 Op 2 . + CDS 37522 - 39417 1530 ## COG0706 Preprotein translocase subunit YidC 37 20 Op 3 . + CDS 39424 - 41601 1907 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 38 20 Op 4 . + CDS 41676 - 43091 1323 ## PGN_1506 putative transporter + Term 43168 - 43214 9.6 39 21 Tu 1 . + CDS 43535 - 44017 277 ## gi|282879879|ref|ZP_06288606.1| hypothetical protein HMPREF9019_0641 40 22 Op 1 . - CDS 44052 - 44972 728 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 41 22 Op 2 . - CDS 44975 - 45706 554 ## COG0101 Pseudouridylate synthase 42 22 Op 3 . - CDS 45713 - 46174 359 ## PRU_1407 hypothetical protein 43 22 Op 4 . - CDS 46187 - 46570 181 ## gi|282879883|ref|ZP_06288610.1| hypothetical protein HMPREF9019_0645 44 22 Op 5 . - CDS 46601 - 47152 388 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 45 22 Op 6 . - CDS 47158 - 48528 787 ## COG2989 Uncharacterized protein conserved in bacteria - Prom 48639 - 48698 2.0 46 23 Op 1 . - CDS 48732 - 49040 289 ## gi|282879886|ref|ZP_06288613.1| conserved hypothetical protein - Prom 49064 - 49123 2.0 47 23 Op 2 . - CDS 49131 - 50006 672 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 50026 - 50085 5.0 48 24 Op 1 . - CDS 50088 - 50666 658 ## PRU_1412 putative lipoprotein 49 24 Op 2 . - CDS 50684 - 51607 898 ## COG1694 Predicted pyrophosphatase - Prom 51657 - 51716 5.0 + Prom 51512 - 51571 6.4 50 25 Op 1 . + CDS 51648 - 54287 2316 ## COG0525 Valyl-tRNA synthetase 51 25 Op 2 . + CDS 54292 - 55518 1171 ## BT_0727 hypothetical protein + Term 55673 - 55711 -0.3 - Term 55349 - 55400 2.1 52 26 Tu 1 . - CDS 55515 - 55715 59 ## - Prom 55806 - 55865 8.8 + Prom 55860 - 55919 3.1 53 27 Tu 1 . + CDS 55958 - 56893 980 ## gi|282879892|ref|ZP_06288619.1| hypothetical protein HMPREF9019_0654 + Term 57068 - 57099 -0.8 54 28 Op 1 . - CDS 57296 - 58291 531 ## COG0863 DNA modification methylase 55 28 Op 2 . - CDS 58293 - 58424 64 ## - Prom 58572 - 58631 4.0 - Term 58624 - 58686 14.0 56 29 Op 1 . - CDS 58708 - 60954 1441 ## COG3537 Putative alpha-1,2-mannosidase - Prom 60974 - 61033 5.1 57 29 Op 2 . - CDS 61151 - 61876 1030 ## COG0217 Uncharacterized conserved protein - Prom 61912 - 61971 4.0 - Term 61900 - 61938 2.0 58 30 Tu 1 . - CDS 61996 - 64458 2135 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit - Prom 64520 - 64579 6.3 59 31 Tu 1 . - CDS 64630 - 64788 91 ## gi|298482351|ref|ZP_07000537.1| conserved hypothetical protein - Prom 64824 - 64883 3.6 Predicted protein(s) >gi|281306232|gb|ADEF01000008.1| GENE 1 100 - 489 377 129 aa, chain + ## HITS:1 COG:no KEGG:BT_1085 NR:ns ## KEGG: BT_1085 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 125 1 125 131 176 70.0 2e-43 MKKLMMLTLMLFTCFTMANAQQNAQIKFDKTTQNFGEFSESSPVQTCVFTFTNVGNAPLI INQAVASCGCTVPAYTKTPIQPGKKGEIKVTYNGKGKFPGHFKKTITVRTNGQPEMTRLY IEGVMKEAK >gi|281306232|gb|ADEF01000008.1| GENE 2 775 - 1047 119 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLSQVERYRRQRWQGRFQRGGVGTASRIALRFEQPHPKSCRKHLGVVVCLTNEDQKPPD AYGHSLIKCMLSNMERMHFISSCLSAVFHS >gi|281306232|gb|ADEF01000008.1| GENE 3 912 - 1166 305 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879840|ref|ZP_06288567.1| ## NR: gi|282879840|ref|ZP_06288567.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 84 1 84 84 134 100.0 2e-30 METIIKKQVVVSDMKQRLADINLSVSWMDFANKYFHKSSSWFYHKLNGIDGNGGKGGFNE EELEQLRGSLFDLSNRIRRAAESI >gi|281306232|gb|ADEF01000008.1| GENE 4 1231 - 1386 205 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282877503|ref|ZP_06286322.1| ## NR: gi|282877503|ref|ZP_06286322.1| conserved domain protein [Prevotella buccalis ATCC 35310] # 1 51 1 51 51 74 90.0 2e-12 MKQEMETMRVTNDERDLLEQMRNYNRSYPNGYPELLDIIIEKFYSMLRQPY >gi|281306232|gb|ADEF01000008.1| GENE 5 1546 - 3339 1596 597 aa, chain + ## HITS:1 COG:CAC0746 KEGG:ns NR:ns ## COG: CAC0746 COG4412 # Protein_GI_number: 15894033 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 145 446 143 465 781 82 22.0 2e-15 MLQLQRHNIKKSLLTLISLLLVSLSWAAKAWKMPLTVTQPDGSVLQAYQHGDEHFNWYTD KDGVILIRKADTFYIAHIDRYGKISSSNLLAHEKSQRQDAEKRAVAAQNRNLFFERAQQQ IETRAMRREPVQVNSTFFPHTGTHKAIVILAQYKDTPFSLTNPRQSFQQFLNGKGRPTDY GHGEGKNASSVQQYFKDMSFGQFTPQFDVYGPVTLPHDLAYYGGTSADGSNEKFDELITD ACLLMDDSLNFADYDANGDGYADLVYVVYSGYGQNMGAPDDTMWPKAGTIRFPPSFDGKK IYRAGISNELIGNPEYPKDKMISGIGLFCHEFSHCMGLPDFYPTLASARGDNQGMEAWSL MDDGEYTANGWCPTAYTAWEREAMGWMTIDDLTTAQQIELKTIDNEGKAYRIYNDNDPSK KDYYIVQNIQEERWNAGLKSHGLLMYHVNYEASAFRLSSNSVNNVKEKPRMTVIPADGLL YSSYNGDRTKYKKELKGDLFPGTKNVTELTDANHLPNYAPWTGGTLDKPIYNISEREGKI YFDFLRKDFTNGIEQTTYKDRPVDERIYTLDGRYVGTDDRILEKGIYIRNHKKFVKP >gi|281306232|gb|ADEF01000008.1| GENE 6 3587 - 4255 531 222 aa, chain - ## HITS:1 COG:CAC2121 KEGG:ns NR:ns ## COG: CAC2121 COG0325 # Protein_GI_number: 15895390 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Clostridium acetobutylicum # 2 221 1 216 221 140 38.0 1e-33 MVNVVQNLQNIQQQLPAHVKLVAISKFHPAESIAEAYACGQRVFGESREQELSRKVEMLP KDIQWHFIGHLQTNKVRLIAPYITMIEAVDSEKLLLEIEKQAARHQRVIDVLLELHIAEE ATKYGFSLSDCSQWLAKGQWRSLEHVRICGLMMMASNVDDEAQIREEMTLASRFFDEVKS QYFADAPYFKERSWGMSHDYRIAVECGSTMVRVGSAIFGERV >gi|281306232|gb|ADEF01000008.1| GENE 7 4323 - 4820 603 165 aa, chain - ## HITS:1 COG:no KEGG:PRU_1298 NR:ns ## KEGG: PRU_1298 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 159 1 156 158 153 54.0 2e-36 MRTRNANWFETSVQYERQGEDGLFTKVREMYVIDAFTFGEAEKAITQEMSSFSSGEFVIK NITPATYGEIFFSDGENDDKWYKAKLMFITIDEEKGKEKRTAVNYLVQANSVAGALKNIE EVFSTSVLDFTVANIAETKIMDVFEHEMKTQADDQPEMDSADATK >gi|281306232|gb|ADEF01000008.1| GENE 8 5009 - 6256 1314 415 aa, chain + ## HITS:1 COG:mll1342 KEGG:ns NR:ns ## COG: mll1342 COG4591 # Protein_GI_number: 13471386 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Mesorhizobium loti # 12 415 26 428 428 102 23.0 1e-21 MNLPLFLSKRIYQEQGDKQKVSKPAIRIATIGVGIGLAVMLISVCVVFGFKHAVSNKVIG FGSHIQVANFMTLQTSESYPIQMGDSMIQVLKKCPGVDHVQRFANKQGVLKTDSDFLGVV FKGVGPDFDSTFIKHNLVEGHIPAFSDKKSSNQILLSKSMAQKLQLKLGNRIFAYFIDDN GVRVRRFKIAGIYQTNLAQYDDVTCYIDLYTAVKLNGWETDQVTGAEITVKDFQQVDMTA NYLIQNVNRSVDQYGETYSSKTIRDISPQIFSWLDLLDLNVWIILALMLAVAAITMISGL LIIILERVQMIGVLKAMGARNNMIRRTFLWFAAFIIGRGMILGNLIGLGLVALQHYTGLV KLDPEVYYVNTVPVEINVWMILLLNLGTLVISLLVLIAPSQLISHIHPAKSMRYE >gi|281306232|gb|ADEF01000008.1| GENE 9 6487 - 8199 1401 570 aa, chain + ## HITS:1 COG:aq_999_1 KEGG:ns NR:ns ## COG: aq_999_1 COG1022 # Protein_GI_number: 15606303 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Aquifex aeolicus # 40 565 14 499 600 231 30.0 2e-60 MNELTNSSKHTANGIEIQSFNALIEKSIIDHWTLDALTDYQGTTLQYHDVARKIEKLHIL FENSGVEKGDKIALCGRNSSAWACAFLATLTYGAVAVPILHEFTAEQIHNIVNHSEAKLL FVGDVVATVIDATQMPDLEGIIYLPDYSLVESRTEKLTYAREHLNEMFGKKYPKYFRQEH VKYYIEKDPDELALINYTSGTTGYSKGVMLPYRSLSGNMMFAVHNLKDKIHPEDHVMSIL PMAHMYGMAFEFLYEFLSGCHIFYLTRLPSPAIIAKAFADIKPSLIIAVPLVIEKIIRKR VYPKIESNNMLKLLLNMPVINKKVEEKICQEVYQAFGGNLYQIIIGGAALNQDVEKFLHR IGFPYTVGYGATECAPIISYSDWKTFAPGSCGRPAYLMEVKIDSSDPENVAGEILAKGPN VMLGYYKDEEATKQAIDKDGWYHTGDLGTMDSEGNIFIKGRSKNMLLGASGQNIYPEEIE DKLNSLPLVSESVVLQDGDKLVGLVYPDFDEAKTLGLDHEDLEKIMEQNRQDLNKLIPAY SKLSAIKIHDTEFEKTPKRSIKRYLYQSKI >gi|281306232|gb|ADEF01000008.1| GENE 10 8356 - 8736 485 126 aa, chain - ## HITS:1 COG:MTH757 KEGG:ns NR:ns ## COG: MTH757 COG2033 # Protein_GI_number: 15678782 # Func_class: C Energy production and conversion # Function: Desulfoferrodoxin # Organism: Methanothermobacter thermautotrophicus # 1 122 1 123 124 144 56.0 4e-35 MTKTKQICRCSACGNIVEVVNASTGTLSCCGKPMELLTENTTDAATEKHVPVIEKTDCGY RVTVGEVEHPMLEAHYIQWIDLITENGVLRKFLKPGEKPVAEFKTCAKNVTAREYCNLHG LWKATK >gi|281306232|gb|ADEF01000008.1| GENE 11 9124 - 9537 557 137 aa, chain - ## HITS:1 COG:no KEGG:PRU_0460 NR:ns ## KEGG: PRU_0460 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 4 134 2 130 130 154 63.0 6e-37 METKLPDFIKYTDKFSKTGFIDKIASIAKRAGAKLVYAALVLYYTLESDQVSVKDKAMII GALGYLISPLDVVPDAIPIAGLSDDLAVLIYVLKRVWVDVSDDVKKKAQSKMAQWFDQDE MISTDQLFSERPEDNPV >gi|281306232|gb|ADEF01000008.1| GENE 12 9628 - 10983 1211 451 aa, chain - ## HITS:1 COG:FN1154 KEGG:ns NR:ns ## COG: FN1154 COG1295 # Protein_GI_number: 19704489 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Fusobacterium nucleatum # 50 355 14 315 396 159 29.0 1e-38 MNQSLQKLKNFLTIDMWRLKSEDVSKPKYLLVSILKKLYLAITFFFTKGTSDYAAALTYS TLLAIVPICAVVFAIARGFGFSKYIEEWFRQALSGQEQAADIIIRFVNSYLIHTHSGVIL GVGLLFMLWTVLRLTRTIEQTFNSIWQVKQERGLFRTVTDYLAMVFMMPIMIVLISGISI FMTTFVDRASSYMLLAPILQIALNLMPFVIISCVFVGLYIFMPNTKVKFSAALAPGILAG VAMQFLQLFYIHGQMLLSSYNAIYGTFAALPLFMLWMQISWTICLFGAQLCYTNQNLEDL AFMTNPAELSHRYRLLLSGVLLGKICKRFIEGKKPYTALELKLETNIPIRITNDLLYDMT VVHLINSSYDGDSAEGELIYQPAEVLDHLTVGTLVDRLEALGAWHLDLDLHDHLETPQWK GVFDLRKKYLDELRNIPVRDLIPEDDEVALQ >gi|281306232|gb|ADEF01000008.1| GENE 13 10998 - 11240 68 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSDVGRGLISRLSPRYIPRLPHEHFQQGRLSSMLIGGQHPPDRSTYVRTLWYPHEQKKSS APISRVLSPSLHWCSTIYLH >gi|281306232|gb|ADEF01000008.1| GENE 14 11869 - 13320 1718 483 aa, chain + ## HITS:1 COG:RSc1058 KEGG:ns NR:ns ## COG: RSc1058 COG0265 # Protein_GI_number: 17545777 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Ralstonia solanacearum # 28 466 32 483 505 274 37.0 2e-73 MKKYSSYLLTAMCVIALAFSAGSFIKVNAAGDQAPIAGQPVDLTYASEKALPAVVHIKYV QNGKTVEVQQSNPFSDFFGFPFGDFFGEGGSQKRQMQTPPKRATGSGVIISSDGYIVTNN HVVEGADELTVTLTDNREFSARIIGTDKMTDLALIKIEGKNLPTLAIGNSDNLKVGEWVI AIGNPFGLNNTVTAGIVSAKARSLYANGVESFIQTDAAINQGNSGGALVNAQGELVGINA MLYSQTGSYAGYGFAIPTSIMSKVVEDLKKYGNVQRAMLGIQGQDVLNYINAEKDKGKDV DLGTNSGVYVAKVEEDGAGAAAGLKEGDVITHIDGKKVTKMAELQEIINSKHPGDKMSIT FLHRKNKVNKTVTLKNAQGNTNIVKVADLDVLGGNYREITQSQKEQLRISYGLEVMKVSN GPLKEVGIAKGFIIQDVNDTPMKSLSDLQLAVKKASTSKDPVLYIKGIWPSGKRDYFAVM VNE >gi|281306232|gb|ADEF01000008.1| GENE 15 13540 - 14427 719 295 aa, chain - ## HITS:1 COG:TM1521 KEGG:ns NR:ns ## COG: TM1521 COG0329 # Protein_GI_number: 15644269 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Thermotoga maritima # 6 292 2 290 294 252 44.0 6e-67 MKYHQFKGLGIAVVTPFTQSGAVDYHALERLVKYQLESGADFLCILATTGETPCLSCDEK DAITSLVKDVNQGRVPILKYCGGNNTAAVIAEMQSTDWSGIDGILSICPYYNKPSQEGLY QHFKAISQASPLPIVMYNVPGRTGVNMSAETTLRLAWECENIVGIKEASGSLEHVDEMIK GKPERFDVISGDDALTFSMIASGAAGVISVIGNALPKEFSRMIRLEFQGEYEPARKIHHM FTELYSLLFVDGNPAGVKALLSDMGLIENVLRLPLVPTTIKTKEKMAAILKEMRI >gi|281306232|gb|ADEF01000008.1| GENE 16 14594 - 15943 864 449 aa, chain - ## HITS:1 COG:CAC3204 KEGG:ns NR:ns ## COG: CAC3204 COG0037 # Protein_GI_number: 15896451 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Clostridium acetobutylicum # 1 437 1 455 461 150 25.0 7e-36 MVNDFEQHIEQYISSLSLLNKEELYLVALSGGADSVCLLRCLQALGYRLEAVHCHFHLRA EEADRDLSFCQDLCAKLQIPFHSTHFDTKTYAQSHGVSIEMAARDLRYSFFRKMVQARHA AAVCVGHHSEDSVETILLNLVRSTGIHGLTGISPKKGIIVRPLLCVNRLKIIDYLHSIQQ NYVTDSTNFVADVQRNQMRLQVIPQLEKINPAAQVNILKAAQRLSDIADIFDNYLSQQVR WHPSEGYRWFPIAELTHEYILWYLLKDFHFSSVQVEQIWQNLHGESGKQWQSSTHELLLD RNRLLIAARSAFPSTVLSMPRIGNYRYDDKWQLAISQEQPNLSAADLKDPHCAFVDSHHV AFPLCLRPVRPADRFQPFGMKGSQLLSDYMTNRKMSVFDKHMQLVLTDAHDHIVWVVNQR TADWCRVTDETTEVLKIVCTAAPCHSSSF >gi|281306232|gb|ADEF01000008.1| GENE 17 15998 - 17182 586 394 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 23 394 21 393 396 230 37 2e-59 MISKTIQLKKGKEESLNRFHPWIFSGAILKKDDDIEEGEVVRVYTYDKRFIAMGHYQIGS IAVRVLSFSDTEISLSFWVSRLQSAFDMRRAIGLADLSNNNTFRLVHGEGDNLPGLIIDC YGTTAVMQAHSVGMHRQRHEICEALKQVMGNRIESVYYKSETTLPYKADLGQENEFLLGA SKDDVALENGLKFHVDWLKGQKTGFFIDQRENRCLLEKYAQGRSVLNMFCYTGGFSVYAM RGGAKLVHSVDSSAKAIELTNANIQMNFPNDERHASFCDDAFKFLDSHDAQYDLMVLDPP AFAKHRGALRNALKGYTRLNLKGFERIKPGGILFTFSCSQVVTKDNFRNAVFTAAAQAGR NVRILHQLHQPADHPVNIYHPEGEYLKGLVLYVE >gi|281306232|gb|ADEF01000008.1| GENE 18 17175 - 17825 500 216 aa, chain - ## HITS:1 COG:no KEGG:PRU_0905 NR:ns ## KEGG: PRU_0905 # Name: not_defined # Def: 3'-5' exonuclease # Organism: P.ruminicola # Pathway: not_defined # 1 212 1 213 217 238 52.0 2e-61 MMRILYSKFNKEAIHELPQVLFTGRIIVITSEKKAEKAVDFLLKQSILGVDTETRPVFRK GQSYKVSLLQVATHDTCFLFRLNILGITPSIKRLLENTETKMIGLSWHDDLLALHKRSDF KKGNFIDLQDIVGDLGIKDLSLQKLYANIFRQKISKRQRLTNWNNETLSEKQKQYAATDA WACIQLYEEIMRLKVSGDYQLVEVEEESKNNEVKND >gi|281306232|gb|ADEF01000008.1| GENE 19 17929 - 20397 2583 822 aa, chain + ## HITS:1 COG:BS_spoIIIE KEGG:ns NR:ns ## COG: BS_spoIIIE COG1674 # Protein_GI_number: 16078743 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Bacillus subtilis # 178 810 164 780 787 393 37.0 1e-108 MGVKRKKPERKPKNVGEAVGFQNILSNEKTDFLLGVILSVIAIYVIIAMVSYFSTGQADQ SILEDLRPREWMNADQSFANYCGSIGAIIAYSLITLNFGIPSFLIPAFFILVGLKLMKAY HVNLWKWFFGCTVVMIWSSVTLAKFATPIMGDQVFNPGGNHGVFCVQQLENLVGPPGLTA VLLLVALMFLTYLSAETIEVIRKALNPVKYLTSKIPFTVTNLSHHNEAKPEAIVEPEEDA EEETNPSEEPEEEAQSTVVDLTDVSMLNKQEGKKAPKTPAQSSNPEGDNDGNLTVEVATE GEKATGKTLTVEEVLKTPINPKEPFLNYKYPQLDLLKKYNDEDKPQVDMEEIKANNARIV EVLNSFGVAIREIKATVGPTITLYEITPAEGVRISKIRNLEDDIALSLAALGIRIIAPIP GKGTIGIEVPNKKPTIVSMESILNSKRFQESKMELPLAIGKTITNEVFMVDLAKIPHLLV AGATGQGKSVGLNAIITSLLYKKHPNELKIVLIDPKKVEFSVYSRITDHFMATAPGNDDE PIITDVTKVVRTLNSLCTLMDYRYDMLKLAGARNIKEYNRKFVNHQLNLTKGHEYMPYIV VIIDEYGDLIMTAGREIEMPITRIAQLARAVGIHMIIATQRPTANIITGNIKANFPGRMA FKVSAMIDSRTILDRPGANQLVGRGDLLFLNGNEPVRVQCAFVDTPEIERINEFIENQPG PVEPLQLPEPAVDGKTGTTGGGNDIQSLDPFFEEAAHAIVTSKSGSTSMIQRRFSIGYNR AGRLMDQLEAAGIVGPAQGSKPRDVLVQDEASLNAIISNIHG >gi|281306232|gb|ADEF01000008.1| GENE 20 20412 - 21047 542 211 aa, chain + ## HITS:1 COG:no KEGG:PRU_0907 NR:ns ## KEGG: PRU_0907 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 16 211 7 198 198 172 44.0 7e-42 MKQRKLQNIFLKAGAVLIALVFSISIHAQNNQQARKILDKTAAIIGNKAGASANFTYSHP KLGKTNGSIAIKGTKFYARTPQATVWFDGKTQWSYLKQTNEVNISSPSHTQQVSMNPYTF IYMYKSGYQLYSKTVGNNYQIRMVAQNKRSSISEMYILINKDNYIPAQIKIKQGNQWSTI QVRNFRTKNLPNNLFVFKSRDFPSAEVIDLR >gi|281306232|gb|ADEF01000008.1| GENE 21 21093 - 22643 648 516 aa, chain + ## HITS:1 COG:no KEGG:PRU_0908 NR:ns ## KEGG: PRU_0908 # Name: not_defined # Def: prophage PRU01 putative membrane protein # Organism: P.ruminicola # Pathway: not_defined # 17 516 3 492 494 280 34.0 1e-73 MMNRTKLCLSATDFQQRIALFKMMWRHRKLAEKRSLSFQQNKIAQIVMWVGIVFGLIYMA FLAILFSLLVQGSTSMTSLEFICSIIPFILAADFMFSLTTQEAPAQLVKPYILLPISKYT CIDNFIGLSFFKASNFIWYAFIIPYLLMSVLFSFGIWISLGVLIFYTLLIYLNRQVYDIT RILTTDSVFWWLLPIGIFAILASPWYLGKDAGIENLLSVYATIGTLIEANNPLPYLASIV LLIALIVLNRHIQYTHITSELENTEKTNASTLKKLSLFENYGDVGTYLQLEIQSILRNKN PRKTFIGSMSLVILFSLLLAFTDVYDGNFSTNFFGFYNFVIFGAMSLSRIMDYEGNYIDC LMVQKENILSLLKAKYLFYVGMLIMPLILMLPTVFSGKFDVLQIVSYAVFTAGFQYFLLF QLAVYNKQCTPLNKKFINKNYSLNNSRQSLINIICLTAPVAFMSVLQIFLNNFQIYILLI VIGSLFVCCSPWWLRNIYNRMMHKKYELLEGFQASR >gi|281306232|gb|ADEF01000008.1| GENE 22 22640 - 23845 1123 401 aa, chain - ## HITS:1 COG:FN1106 KEGG:ns NR:ns ## COG: FN1106 COG1760 # Protein_GI_number: 19704441 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Fusobacterium nucleatum # 1 397 1 396 408 412 51.0 1e-115 MKSLKELYKIGKGPSSSHTMGPQLASKIFLSKYPQADSYEVTLYGSLAATGKGHLTDVAI AGVLGEHKDLDIVWKPQIFLPFHPNGMLFKAFDAHKQEIGEWTVYSVGGGALSEGKGKDD MFNTKSVYEMTTLAEIMAWCEENGRSYWEYVDECEDDDIWDYLLEVWQVMKEAVERGINH EGVLPGPLNLRRKAASYFVKANGYKKSLQSRALVYAYALAVSEENASGGTIVTAPTCGSC GVMPAVLYHLSKGHGFSDTRIVHAMATAGLFGNIVKYNASISGADVGCQGEVGVACAMVS AAACQLFGGSIAQIEYAAEMGLEHHLGMTCDPVCGLVQIPCIERNAFAATRALDANLYAT FSDGKHHVSFDKVVRVMKKTGHDLPSLYKETSEGGLAAEIC >gi|281306232|gb|ADEF01000008.1| GENE 23 23993 - 24658 448 221 aa, chain + ## HITS:1 COG:lin2751 KEGG:ns NR:ns ## COG: lin2751 COG1285 # Protein_GI_number: 16801812 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Listeria innocua # 1 221 1 220 220 181 48.0 1e-45 MELTFIIRIFIAGILGGLIGIEREYRAKEAGFRTHFLVALGSALFMVVSQYGFSHILETS PNVSLDPSRIAAQVVSGIGFIGAGTIIFQKHVVRGLTTAAGLWVTSAIGLATGAGLYTIS VASTVLVLICLEVLNYTIQHFGTRHISFSFISPDKAHIDEILLRLKNEKAILHSYRVKLE SFQAKEAYHVSMEMVMKRSRFDNGFIDFISEFDGVTVENIE >gi|281306232|gb|ADEF01000008.1| GENE 24 24961 - 25401 351 146 aa, chain - ## HITS:1 COG:FN2045 KEGG:ns NR:ns ## COG: FN2045 COG0735 # Protein_GI_number: 19705335 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Fusobacterium nucleatum # 9 136 12 137 142 105 44.0 3e-23 MILDNQAYNRLIDAGIHPSAQRIAIMEYLLTNFTHPTVDEIYKNLCPKIPTLSKTTVYNT LRLFAEHHAAQMITIDDHRVCYDGKMEPHVHFFCNKCGKIIDLPNEAAPQLAEKRNIDGH IVDEMQLYYKGVCNECVNAELEKSQN >gi|281306232|gb|ADEF01000008.1| GENE 25 25519 - 26889 1372 456 aa, chain - ## HITS:1 COG:jhp1115 KEGG:ns NR:ns ## COG: jhp1115 COG0124 # Protein_GI_number: 15612180 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Helicobacter pylori J99 # 5 440 4 422 442 242 33.0 1e-63 MANKPSIVKGTRDFSPAEMSKRNYIFNTIKEVYALYGYQQIETPSLETLQTLMGKYGEEG DKLLFKVLNSGDFLNKVSDEELQERNVLKLASKICEKGLRYDLTVPFARYVVMHHDEIQF PFKRYQIQPVWRADRPQKGRYREFYQCDADVVGSDSLLNEVELMQIVDEVFTRFGVRVLL KINNRKILTGIAEVIGAADKIVDITVAIDKLDKIGLEGVNQELANAGIDADAIEKLQPII SLQGTNEEKLKTIGEVLKDSEIGLKGVEEVSYILKVLKSVGLHHEIELDLTLARGLNYYT GAIFEVKALDVEIGSITGGGRYDNLTGIFGKPGLSGVGISFGADRIYDVLHALNLYPKET IGGTQLLFINFGDQETAYCLPLVNEARRQGVCTELFPDAVKMKKQMSYANAHEIPYVALA GENEMKENKITLKDMRSGEQKLLSKDDLIPFLLAQQ >gi|281306232|gb|ADEF01000008.1| GENE 26 26906 - 28180 1249 424 aa, chain - ## HITS:1 COG:VC2602 KEGG:ns NR:ns ## COG: VC2602 COG0104 # Protein_GI_number: 15642597 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Vibrio cholerae # 8 423 6 426 432 390 47.0 1e-108 MNTGKVDVLLGLQWGDEGKGKVVDVLTPKYDVIARFQGGPNAGHTLEFENQKYVLRSIPS GIFQGGKLNIIGNGVVLAPDLFMKEAQELEKSGHELKSRIHISKKAHLIMPTHRILDQAY EAARGKGKVGTTGKGIGPTYTDKTSRNGLRVGDILDRFDEKYQAHKERHLKMLKALNYSD FDITETEKEWMEGVEYLKQFKLVDSEHEINRLLRQQKTILCEGAQGTMLDVDFGSYPFVT SSNTICAGACIGLGLGPRMIGNVYGIMKAYCTRVGSGPFPTELFDETGKQLRDLGHEYGA VTGRERRCGWVDLIQLRYSVMVNGVTHLILMKSDVLDAMKTIKACVGYKLPDGTTTKELP FDLEGVEPIYQELEGWQTDMTKMTSEDEFPAAFKKYLQFIEEFLETPIKIVSIGPDRAQT VIRK >gi|281306232|gb|ADEF01000008.1| GENE 27 28185 - 28664 211 159 aa, chain - ## HITS:1 COG:BH0951 KEGG:ns NR:ns ## COG: BH0951 COG0735 # Protein_GI_number: 15613514 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Bacillus halodurans # 17 146 13 142 145 66 34.0 2e-11 MKKDIRNAVRQHLDDYLITNNLRKTSERYAILDAVLSLKGHFSLDELNDYLLEKSFRVSR ATLYNNLRLFQKLRFVVCHRLSNGTKYESCCDSKDHCHQICTICGKVTEINSAELRDTVE EMKLKRFKKDAYTLYIYGVCSSCQAKITRRKSNRKKLKP >gi|281306232|gb|ADEF01000008.1| GENE 28 28735 - 29343 533 202 aa, chain - ## HITS:1 COG:no KEGG:PRU_0988 NR:ns ## KEGG: PRU_0988 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 19 199 1 191 198 192 49.0 5e-48 MNHDVNETVKEIKRSFRLLMNGVASQSMREKGASYFVNWGCSLGDLSHMAKQYGKNYHLA IALWKENIRECKILATLIMPPEQLDADIVDIWVADIHTQDLAEIASFNLFQYLPYASVLA YQWMATDDKIKQICAYQILSRLFMRGVVPNERGINEFLDQSSVALQHEDVGVRHAAMNCI VRFCALGDEYHQIATKALQMEI >gi|281306232|gb|ADEF01000008.1| GENE 29 29333 - 31309 1611 658 aa, chain - ## HITS:1 COG:no KEGG:PRU_0989 NR:ns ## KEGG: PRU_0989 # Name: not_defined # Def: M49 family peptidase (EC:3.4.14.4) # Organism: P.ruminicola # Pathway: not_defined # 5 652 3 644 649 858 63.0 0 MIQHFNYSDERFADLQMLRYRLKGFETLSLQQKIYIYYLSKAAQAGRDITTDQFGKYNLK IRKVLELIYAQHANAIDNPEFQALEVYLKRIWFSNGIYHHYGCEKLQPGFSPSFFKSLLL TIPPSQLPLKAGQSVEMLYDELYPVLFDPNYLPKRVNKTDGDDLVLTSACNFYDNVTQAE VETYYQRMRRIHDEEPISYGLNSKVIKDENGRVQEVKWTSTGLYGKAIQRIILWLEKAIP YAENDQQKHVLELLITYYHTGELKLFDQFSIEWLKEQDGQVDFINGFIEVYGDPLGLKGS WEGFVSYKDEEATQRTKLISQHAQWFENHSPVDQRFKKQEVRGVTAHVVCAAMLGGDEYP ASAIGINLPNAEWIRTRYGSKSVTIGNLTEAYNEVARGNGLHEEFVVDDEVLRQINLYGN LCDNLHTDLHECVGHGSGQLLPGVSGDALRAYGDTIEEARADLFALYYMADEKLVELGLL PDTTAYQAQYYTYLMNGLMTQLVRIQLGHKIEEAHMRNRALIAHWVLAHAGDAVEIVERS VAGTNEVKHYVQVNDYSKLRNLFGELLAEIQRIKSEGDFEAARNLVETYAVNIDSVLHEE VLKRYRQLDIAPYKGFINPWMKPKLDNQGNIVDIELDYTESYAHQMMRYSKESAADES >gi|281306232|gb|ADEF01000008.1| GENE 30 31331 - 31807 485 158 aa, chain - ## HITS:1 COG:no KEGG:PRU_0990 NR:ns ## KEGG: PRU_0990 # Name: not_defined # Def: AraC family transcriptional regulator # Organism: P.ruminicola # Pathway: not_defined # 1 157 1 157 157 205 70.0 4e-52 MAKYNITEKKEKEAAYRSLVSPQLMDELKEKILDIILIQKKYKDKNYSAKKLADELGTNT RYISAAVNVRFHMNYTSFVNKFRIEEAMALLADKRYQDLNMQEISDVVGFANRQSFYSAF YKLNNCTPREYRIEHLGVQPQEPVAPKKRGRKPKSKKK >gi|281306232|gb|ADEF01000008.1| GENE 31 32165 - 32728 530 187 aa, chain - ## HITS:1 COG:BH3033 KEGG:ns NR:ns ## COG: BH3033 COG0424 # Protein_GI_number: 15615595 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Nucleotide-binding protein implicated in inhibition of septum formation # Organism: Bacillus halodurans # 6 185 4 182 190 143 45.0 2e-34 MTNYHLILASNSPRRKELLEGLDLPFTVKVKKYVPEDYPKDLPVAQVPQFIAKEKASAYD IRHGELLLTADTVVVVGQEVLGKPVDESDARRMLRLLSGRTHQVITGVCLTTTSQQKAFS VSTNVTFKELSDDEINYYISKYQPFDKAGAYGIQEWIGYVGVTKLEGSYYNVMGLPVQRI YEEMQTM >gi|281306232|gb|ADEF01000008.1| GENE 32 32771 - 33289 479 172 aa, chain - ## HITS:1 COG:aq_2171 KEGG:ns NR:ns ## COG: aq_2171 COG1778 # Protein_GI_number: 15607107 # Func_class: R General function prediction only # Function: Low specificity phosphatase (HAD superfamily) # Organism: Aquifex aeolicus # 6 156 7 157 163 120 37.0 1e-27 MINYDLNKIKAIIFDVDGVLSKSTITLDSDGEPLRTINIKDGYAIQLAQKRGLRIAILTG GNTPAVRLRYESLGLEDIYMGCSVKIKHYQEFIEKYGLTDEEVIFVGDDIPDYEVMKQCG CPCCPADAVAEIKELSTYVSHYRGGEGCGRDIIEQVLRVKKLWLNDQTAFGW >gi|281306232|gb|ADEF01000008.1| GENE 33 34244 - 34384 70 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYVLLSFGFFSVQNVSSFSRVARYTPSLSCILTSKISSKSNKANL >gi|281306232|gb|ADEF01000008.1| GENE 34 34473 - 35780 969 435 aa, chain - ## HITS:1 COG:no KEGG:PRU_1441 NR:ns ## KEGG: PRU_1441 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 70 435 26 392 392 394 50.0 1e-108 MKLISTFMMIMIPMVLSANEPVGRKVIKHPSDTTTTFVKAYTDSLHHYQQQLDSLQRINA LLYHRLAQENGKYARLFLPTTFYHQISQHQFSLSKDSLTSSMFNEALENALLHIYLKRPD LVTKTQTQLKAEGKVSTSQETTLKNKTAIVEKVAPLPTEEVYVPVDLVIKKPNFWSFSGD GYLQFLQNYVSGNWYKGGESNYSMLGNVTLNLGYNNKKKIKWDNKLEMKLGFQTSESDTL HTLKTHTDDIRYTSNFGLQATKNWYYSLQMIANTQFMRGYRNNDEKVYSDFLSPLNIDVA VGMRYNFDWLKGRLKGSVNLSPLAYHYRYVAREHLVTRFGIEKGKHHVDDYGSSMNIDFN WKFSEMLRWRSRLYGYTSYKRSEIEWENTFTFQFTKYLSANLYVYPRFDDSRKRDDTNGY FMYKEYLSIGLSHSF >gi|281306232|gb|ADEF01000008.1| GENE 35 35908 - 37515 1325 535 aa, chain + ## HITS:1 COG:BS_ctrA KEGG:ns NR:ns ## COG: BS_ctrA COG0504 # Protein_GI_number: 16080768 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Bacillus subtilis # 4 534 2 535 535 599 53.0 1e-171 MAETKYIFVTGGVVSSLGKGIISSSIGKLLQARGYNITIQKFDPYINIDPGTLNPYEHGE CYVTTDGMETDLDLGHYERFTGIKTTKANSLTTGRIYKAVIDKERRGDYLGKTIQVVPHI TDEIKRNVKLMGQKFHYDFVITEIGGTVGDIESTPFLEAIRQLKWELGKNALSVHLTYVP YLKAAGELKTKPTQHSVKELQSIGIQPDILVLRTEKHLKDDVLHKVASFCNVDFDCVIQS EDLPSIYEVPVNMQNQKLDVAILKKMGIEVKETPTLGPWKSFLERRNKAKKEVHIGLVGK YDLQDAYKSIRESLSQAGTYNDHKTILTFINSEKINESNVADMLQGQDGIVICPGFGQRG IEGKIIAAHYTRTHDIPTFGICLGMQMMVIEFARNVLGYPDANSREMDEKTEHNVIDIME EQKNITNMGGTMRLGSYECVLKQGSHVFNIYKQEYIQERHRHRFEFNNSFLKEYEKAGMM CVGKNPESDLVEIVEIPSLKWYIGTQFHPEYQSTVLNPHPLFVDFIKSAIENQKK >gi|281306232|gb|ADEF01000008.1| GENE 36 37522 - 39417 1530 631 aa, chain + ## HITS:1 COG:RSc0004 KEGG:ns NR:ns ## COG: RSc0004 COG0706 # Protein_GI_number: 17544723 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Ralstonia solanacearum # 82 575 81 541 553 129 25.0 2e-29 MDKNTMTGLVLMGLLLIGFSWWSQPSAEEQAKKMQQDSIAAVTQHKAELAKQQAHAKEIA DLKAKQKADTTALFHAALEGQAQEVVLKNEHLELSVNTKGGTVSKAIIKNFKDREDNPDV VLFDDKVQKLNFIMSTKEANIATQDLYFSPSAQTDSTLTLTADAGQGKSLVIQYRLGADY LLHMSMKVNGMNGLFAPNTKFMNVDWTDKCRQQEKGFTFENRYATLTYHKVKGGTKKLSE ASEEIDKKIDDKIDWVAFKNQFFSAVMIAKHDFSEEALMTSVPQEKGSGYLKAYQAKMQT FFDPTGQKASEFEFYFGPNDFRLLNRIEKESTFNKDLELQRLVYLGWPLFRIINRWFTIY VFDWLSKWFPMGVVLILITLLLKLITYPMVKKSYMSSAKMRVLKPKLEAATAQYNKPEDQ MQKQQAMMAEYSKYGVSPLSGCLPMLIQMPIWIAMFNFVPNAIQLRGESFLWINDLSTYD PIIQWNKNIWLIGDHLSLTCILFCIANVLYSWMTMRQQRDQMVGQQAEQMKMMQWMMYLM PVMFFFMFNDYSAGLNFYYFVSLFFSAAIMWTLRKTTNDAKLLQILEARYEENKANPKKL SGLAARLQAMQEQQQEMQRKREELERKKRKL >gi|281306232|gb|ADEF01000008.1| GENE 37 39424 - 41601 1907 725 aa, chain + ## HITS:1 COG:CC1986 KEGG:ns NR:ns ## COG: CC1986 COG1506 # Protein_GI_number: 16126229 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Caulobacter vibrioides # 41 722 18 675 683 300 29.0 7e-81 MNKKTLLMATVALMIGGSFAKAQSTVKTAKEQNAAFKATNDLMTPEALWAMGRIGGASSS PDGNQVVYQVGYYSVKNNNSQQMLFVTDVKGSHKTQLTTGSKSETDAVWIQQGKKIAFLT GGQLWTMNPDGSNRKKLTNSTVDIEGFKFSPDEKKVILIKSLPYHGTIKANPADLPLATG RLATDMNYRHWDHYVESIAHPFVANVTESGVDEGKDILQDEPFECPTAPFGGVEQLAWSP DSKQIAYTCRKKEGVQYAISTDTDIYLYDITTGKTRNLCKPEGYQEPAIDATKSMKNQAV NHQQGDMNVGYDTNPSFSADGKYIAWQSMKQNGYESDRNRLCIYDLKKGVKQYVTESFDS NVDAYCWGNDNTTLYFIGVWHGKTHVYQTNLKGQVKQLTDGQYDYGSVQTLGNTKQLLVT RHSMSHPDDLFIVSPSKKERQAKVTQLTDENKHIFDQLAIGKVEERWSKTSDGKDLLSWI VLPPHFDANKKYPTLLFCEGGPQSPVSQFWSYRWNLQIMAANGYIIVAPNRRGLPGFGSD WNAEVSGDWTGQCMKDYLSAIDDAANHLPYVDKDRLGAVGASFGGFSVYYLASHHNKRFK CFISHDGAFNLESMYTDTEEAWFSNWEYEDAYWNKDQTANAKRTYDNSPHKFVDQWDTPI LCIHGEKDYRINANQGMGAFNAARLRGIPAELLIFPDENHWVLKPQNGILWQRTFFNWLD RWLKK >gi|281306232|gb|ADEF01000008.1| GENE 38 41676 - 43091 1323 471 aa, chain + ## HITS:1 COG:no KEGG:PGN_1506 NR:ns ## KEGG: PGN_1506 # Name: not_defined # Def: putative transporter # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 471 1 467 467 464 55.0 1e-129 MVETFQKKLSDSPAWRWTALVLLASAMFFAYIFVDILSPLQEFLQTQHGWDPIAYGRFAG SEPFLNVFVFFLIFAGIILDKMGVRFTAILSGTVMVVGASINYYALTEGFDASSIKVWFD NNLNLPLAAWNITPFYDGMPASAKLSAIGFMIFGCGAEMAGITVSRGIVKWFKGKEMALA MGIEMAIARVGVAVVVIASPAIASIKPIDVSRPLAYELLLLIIGLICFIVYGFMDKKLDA QGVEEEKDDPFKVSDIGKILSLKMFWIVALLCVLYYSAIFPFQKYAINMLQCNLQFSAEQ AGLVFFVFPLGAAAVTPFLGNFLDRKGKGATMLILGAMLMIICHLIFAFVVPATQSVIIT YAAIILLGISFSLVPAALWPSVPKLIDDKLIGSAYALIFWIQNIGLYAFPMIIGSVLRSS NPGVTDPLKYDYTAPMLVFVSLGVIALILGFLLKALDKKKGYGLEQPNIQK >gi|281306232|gb|ADEF01000008.1| GENE 39 43535 - 44017 277 160 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879879|ref|ZP_06288606.1| ## NR: gi|282879879|ref|ZP_06288606.1| hypothetical protein HMPREF9019_0641 [Prevotella timonensis CRIS 5C-B1] # 1 160 20 179 179 319 100.0 3e-86 MKPLCLGLLIMFFTFQSCDKTDFTNKKYVEKQLSLNLCGDNEKVSPWTSVTAYTGNGSTL YVKQGKDTKVCKDGTFEISRGRWYTSDTISLYLKSRNPDWIHIGITYRKRMKSPSIVDDL TIKIKGYVDNIQHLDTMHTIHAFYGDDKIKESDYIFKLNF >gi|281306232|gb|ADEF01000008.1| GENE 40 44052 - 44972 728 306 aa, chain - ## HITS:1 COG:CAC1984 KEGG:ns NR:ns ## COG: CAC1984 COG0697 # Protein_GI_number: 15895255 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Clostridium acetobutylicum # 2 301 4 282 285 114 28.0 3e-25 MWLILAFLSAFLLGFYDVFKKVSLSDNAVIPVLFLNTLFSSLLFLPFIILSQFTTYLDDT IFHVSTAGWAAHKFIVLKSFIVLGSWVCGYFAMKHLPLTIVGPINATRPVLVLVGAMLVF GETLNLYQWVGVLLAITSFFLLSRTGKKEGIDFKHNLWIVFLVISAILGAVSGLYDKFLM MPRNAGGLGLNQMMVQSWYNVYQCGLMGVMLMLLWLPTRKRTTTFQWRWTILGISIFLCM ADFVYFYALSQPEALIAVVSMVRRGSVIVSFLFGIFLFQEKNIKGKAIDLLLVLLGLIFL YIGSRV >gi|281306232|gb|ADEF01000008.1| GENE 41 44975 - 45706 554 243 aa, chain - ## HITS:1 COG:L0331 KEGG:ns NR:ns ## COG: L0331 COG0101 # Protein_GI_number: 15672468 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Lactococcus lactis # 1 243 1 247 253 168 36.0 1e-41 MQRYFIYFSYDGTSYHGWQQQPNSHSVQAELQKALSTILREPIVVVGAGRTDTGVHARKM VAHFDIEAVIDGEQLAYKLNRLLPRDISVAGVKPVQADMHARFSAKWRTYHYYVHSHKNP FLRHYSCQLPFQLDYPLMNQAANHLLSVTDFGAFCKTHTDVKTTLCEVVRAEWVQTGEDS WYFVIKANRFLRNMVRAVVGTLIEVGRHRMTLEQFDAVIRSGNRSNAGESMPAHALFLEE IEY >gi|281306232|gb|ADEF01000008.1| GENE 42 45713 - 46174 359 153 aa, chain - ## HITS:1 COG:no KEGG:PRU_1407 NR:ns ## KEGG: PRU_1407 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 140 1 135 145 85 40.0 4e-16 MKQIYSFLLLFVCVGVFATGTELGEQSLRSRRGDFQARMEQFITTEAGLTPQESEVFFPL FREMKKQQMTYFLEQRRLRHIDMNDNKACEEAVLKRAANEVKIKEIQQTYYQKFLKVLPA NKVFRIVKAEKKFHRQLMQRHALKYFKKRNDKR >gi|281306232|gb|ADEF01000008.1| GENE 43 46187 - 46570 181 127 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879883|ref|ZP_06288610.1| ## NR: gi|282879883|ref|ZP_06288610.1| hypothetical protein HMPREF9019_0645 [Prevotella timonensis CRIS 5C-B1] # 1 127 1 127 127 251 100.0 8e-66 MKINRIEDKQHIEHCFKQTNSFKVPEGYFERVADDILVSLPRQEQQVVPARHARFYPLHT RWLVAGCVLAALLSVTLYFHHTTVPPSSKQSEPMSTYTGNYTSETMEEAAFISLMDDEDL YSLFEDD >gi|281306232|gb|ADEF01000008.1| GENE 44 46601 - 47152 388 183 aa, chain - ## HITS:1 COG:mll8140 KEGG:ns NR:ns ## COG: mll8140 COG1595 # Protein_GI_number: 13476734 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Mesorhizobium loti # 23 171 14 167 208 74 28.0 9e-14 MDERWDEHTIGRALADPKLREQAFTQMVRQYSEPLYWRIRRMVFYHADADDILQNTFLKA WKHVAQFQNKSKVFTWLYRIAINEALDFLRKQKNTLTTSVEDVSSLAQMMLADEYFDGDE AEAILHAAIATLPEVQRMVFTLRYFEEMKYAEMSELLGTSEGALKASYHLAVKKISAFIQ TSN >gi|281306232|gb|ADEF01000008.1| GENE 45 47158 - 48528 787 456 aa, chain - ## HITS:1 COG:HI1667 KEGG:ns NR:ns ## COG: HI1667 COG2989 # Protein_GI_number: 16273554 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Haemophilus influenzae # 131 447 184 474 489 109 26.0 1e-23 MQADYRARNYYLQGGRLLWVDRNGVDQRADTLLAYLREMKAVGFSPNKFCVASITADLNR LRALQFDKSQHSIHQVLGRLEYHLTKAFFRYATGQQFGFTNPYVLFNKLDVKERDSLNVS YYRLFDIPMARPTKNYWKNLCKQTHPDSLTNFIHHIQPTNPLYQVFKNYLAQQGRSTNSV KTLCNLERTRWRLKDNLFAQDKYVMVNIPAMELLAIDHEQVMRMRVGVGTNTTKTPLLSS RIMRMDVNPQWVMPKSIIDKSVARHAGDSAYFENHRYFIRNRETGNRVDPRQVTSEMLRS GQYFVIQEGGKGNAMGRIVFRFKNNFAVYLHDTSSRGVFDQSNRGVSHGCVRVEKPFELA VFLLKDKDEELIEKMRYSMQADIHSHYQKKLTATSNLPNDTLQESKLINSVRVQPAVPLY ITYYTLYPNEQHGMREYQDIYGFDAVIYKQLKNYLR >gi|281306232|gb|ADEF01000008.1| GENE 46 48732 - 49040 289 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879886|ref|ZP_06288613.1| ## NR: gi|282879886|ref|ZP_06288613.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 102 1 102 102 190 100.0 2e-47 MIHKILSITFAFALLIGSPITMQASEGFEAIENEFQNVSISVSESVLHISGANGQVLQIY NVAGVCLMRVKIDSQDKRYELNYPKGCYIIKVGKTVRKISIR >gi|281306232|gb|ADEF01000008.1| GENE 47 49131 - 50006 672 291 aa, chain - ## HITS:1 COG:slr0050 KEGG:ns NR:ns ## COG: slr0050 COG1234 # Protein_GI_number: 16331469 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Synechocystis # 1 290 12 307 326 161 34.0 2e-39 MPTLRHHPSSQVVEIREKLFMVDCGEGTQVQLRRAKIKFTKLQAVFITHLHGDHCLGLIG MLSTFGMLGRTAPLHIYAPQTLEALLQTQIAVFCPGLEYEVKFHAVETTQHQVIYEDRSL TIESIPLAHRLPCCGFLFREKPVLPHIRREMIDFYEIPVSQINNIKNGADWTTPEGEIVS NQRLTYPAAPPRSYAYCSDTRYLPHLHQLVQGVDTLYHEATYDQENESRAEMFAHSTAAQ AAMVARDAKVGKLLLGHYSARYDDESVLLQEAKNIFPNSFLTDEGLVFDVK >gi|281306232|gb|ADEF01000008.1| GENE 48 50088 - 50666 658 192 aa, chain - ## HITS:1 COG:no KEGG:PRU_1412 NR:ns ## KEGG: PRU_1412 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 8 192 5 209 227 73 28.0 5e-12 MMKNTLKIFAAMLMTVSLAVGCVDKKGSASSSDTVSQDEEASMDSTVYGVCGDGTAMHTL QVISDAGDTVDYMINTDGELVSDIQGGRMVGDRMAVIGAKVNQELVAKKAINLTTLLGRW VSLDKNFEIREGGIVESFVKAESHPWTKWKILNGALLLNTDTFEVKTLGADSLLLENKNG IFVYKRQRDKQQ >gi|281306232|gb|ADEF01000008.1| GENE 49 50684 - 51607 898 307 aa, chain - ## HITS:1 COG:CC1747 KEGG:ns NR:ns ## COG: CC1747 COG1694 # Protein_GI_number: 16125991 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Caulobacter vibrioides # 34 303 21 274 275 176 38.0 4e-44 MQNYEISIENDYFCNNKNSAMHSREEKIAAFGRLLDVQERLRKECPWDRKQTYHSLRPHT IEEVYELCDAILKEDKVNICKELGDVLEHVIFYAVLGEETEAYDIADVCDKEARKLMFRH PFIDWTGWEGDPKKEVLDAQTRVDETTAKPQTEQQVEKTWEQIKQKEKDGNKSVLAGVPE ALPSLIKAYRIQDKARNVGFDWEKREDVWKKVREELSELEEELAKDDAEHATKELGDFLF SVINAARLYHLNPENALEQTNQKFIRRFNHIEAQIIKSGKQLKDLTLAEMDELWEEAKRM EKESDNN >gi|281306232|gb|ADEF01000008.1| GENE 50 51648 - 54287 2316 879 aa, chain + ## HITS:1 COG:FN2011 KEGG:ns NR:ns ## COG: FN2011 COG0525 # Protein_GI_number: 19705307 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Fusobacterium nucleatum # 2 877 3 887 887 729 44.0 0 MELASKYNPQDVESKWYEYWLNNKLFSSKPDGREAYTVVIPPPNVTGVLHMGHMLNNTIQ DILVRRARMEGKNACWVPGTDHASIATEAKVVARLAEQGIKKTDLSRDEFLKHAWDWTHE HGGIILKQLRRLGASCDWDRTAFTMDEKRSESVIKVFCDLYNKGLIYRGVRMVNWDPQAQ TALSDEEVIYQDEHSKLYYLRYHVVEDPDKFAIVATTRPETIMGDTAMCINPNDPKNAWL KGKHVIVPLVGREIPVIEDDYVDIEFGTGCLKVTPAHDINDHALGLKHGLQTIDIFNDNG TISEEAGMYVGMDRMDVRKQIAKDLEKAGLMEKVEDYNNKVGYSERTHVPIEPKLSTQWF LKMQHFADLALQPVMDDDIQFYPSKYKNTYRHWLENIKDWCISRQLWWGHRIPAYYFTVN GKQEVVVAETAEAALKLAQQKDCALTMNDIEQDSDCLDTWFSSWLWPISLFDGINNPDNK EIQYYYPTADLITGPDIIFFWVARMIMAGYEYKGQMPFRHVYFTGIVRDKLGRKMSKSLG NSPDPIALIDKYGADGVRMGMMLSAPAGNDILFDESLCEQGRNFNNKIWNAFRLVKGWEV TDTEQPQTSKLATAWFEAKLRTTNEEVNDLFSKYRISEALMVVYRLFWDEFSSWYLEMIK PAYGTPIDTKTYQQTLNFFDILLKMLHPFMPFITEELWQHLYERKEGESIMTQQLDIPTP TDDEKSLTEEIEVVKQIVSGVRMIRNQKNISPKETLELVAIGDNPFAAFNDIIIKMAHLS SIQTLTDKPADVAQFMVGTNEFAVPIGNLIDVEAELKKHEDQLKHLEGFLAGIQKKLSNS KFVANAPEAVVALERKKQSDTEEKIAALKDSMAELKKKK >gi|281306232|gb|ADEF01000008.1| GENE 51 54292 - 55518 1171 408 aa, chain + ## HITS:1 COG:no KEGG:BT_0727 NR:ns ## KEGG: BT_0727 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 10 408 16 393 393 308 42.0 3e-82 MMRKQFFLWLVLLCTLTITSCKDDDTIDINDYNKQTILVYMPWSGSAQHKGLYNFFLQNL DSIESGVKAQKGLKNSRLVVFLSKSPTESELYEVGYVNKQITHTPIKTYSGKAYTTAEGI AQIINDTKTAAEALNYALIIGCHGTGWTYKENWKDYPYNAKRYAFSTRQQPTYWEQTRFF GSVDDILNYATDIETLAKGIAQTGTKMQYILFDDCYMANVETAYMLKDVTNFLVGSTSEV MAVGMPYADMWSSLASPTPNYGAIVKKFHDFYSNYRVPSGTIAAIDCREVEALAAVMKDI NAKYSLDDSLRDSVQVLDGFKAGIFFDMGDYVKWLCKNKNLRERFNQQLTKTVRHQSHTD TIYSYIYPYEGPKYIPVKTFSGLTISDPTIHVAPLRGIQNTAWWRATH >gi|281306232|gb|ADEF01000008.1| GENE 52 55515 - 55715 59 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKIIKVQKIQKKFSIIAICCTLSKFPILIRNADKLILWMYCIRSKPLQSNKSNFGCGLLV SRNNVL >gi|281306232|gb|ADEF01000008.1| GENE 53 55958 - 56893 980 311 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879892|ref|ZP_06288619.1| ## NR: gi|282879892|ref|ZP_06288619.1| hypothetical protein HMPREF9019_0654 [Prevotella timonensis CRIS 5C-B1] # 1 311 1 311 311 544 100.0 1e-153 MKKLGLTLMAVLLAAVAVNAQTTKKLLSLKASNGIGVTFEYNAEGKVVKTTEVTDPEVKS DKSTSTYEYSADKITQTYNTDGGTPDVRIAKIENGRIVSESVKFEVMGTLEDATLTYTYN ANNELVKSVKKVGTEVYECVYTWTDGDITKIETYYNSKPNEIITLTYDTSVTNPYILAMN MMWLADFDIEGITPYGQVFGHYYGNLTKHALKSRTAENAPGSVKQEVSDNFVLTYNKDAN GEVKSMTTKVEEEDVEFQLEWESTDGIAALQTALPQQETYYNLNGVKLQKLQKGVNIVKN AKGKTRKVVVE >gi|281306232|gb|ADEF01000008.1| GENE 54 57296 - 58291 531 331 aa, chain - ## HITS:1 COG:RSc1982 KEGG:ns NR:ns ## COG: RSc1982 COG0863 # Protein_GI_number: 17546701 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Ralstonia solanacearum # 35 285 2 248 270 145 34.0 1e-34 MTEKVRAERNRTLTVSASEIPTLEKFILSVNDIKTSFADDTIINADLFDCLDYIPNGYFN LIIIDPPYNLDKDFHGKKFSSMKSDAYEDYLRSWFYKVCDKLAPNGTLYVCGDWKCSSSM QRVIEERLTVINRITWQREKGRGAKSNWKNAMEDIWFAVRNPKDYYFDVDAVMMKRKVIA PYKVDGNPKDWEETENGNFRITYPSNFWDDISIPFWSMPENTDHPTQKPEKLYAKLVLAS TKLGDKIFDPFLGSGTTAVVAQKLGRSYCGVEINREYCYWAVKRLMNAISNNTIQGYEDG VFWERNSLGDQKKQQIQSKITKKVKEPQIRN >gi|281306232|gb|ADEF01000008.1| GENE 55 58293 - 58424 64 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MATRIPYIKTYSISQEKRTAVKDERIVNALNVDVKDLLVSNNI >gi|281306232|gb|ADEF01000008.1| GENE 56 58708 - 60954 1441 748 aa, chain - ## HITS:1 COG:XF0842 KEGG:ns NR:ns ## COG: XF0842 COG3537 # Protein_GI_number: 15837444 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Xylella fastidiosa 9a5c # 17 746 35 779 790 543 39.0 1e-154 MRRSRYFVLLFNLLLAALPLSAKKDYTQFVNPIIGSGGHGHVFVGANVPFSAVQLGPMNI FKGWDWCSGYHYSDSVIIGFSHNHLSGTGCDDLGDISLMPYSGEMRTKRGDDHHLEGAAS SKFSHDNEVVSPSYYAVKLDNGVNVELTTTERVGVHRYNYTKAETPRVLIDLFNGIGNKT YEAYIRKIDDTTVEGYRFVNGWAPQHKVFFYAKFNQPIQSLDVFHLNTPAGTDELQGRDV KAVATFKDGMKELLVKVAISSVSCTNAKLNLEKEMTGWNFDDVHQVAKQKWNDVLSRIEI EGTPRQKTIFYTAMYHAFIAPNLYCDVNGDFRGIDDKVYRNNKFKNYTTLSLWDTYRTLH PLFTIIARKEVPDMMNSMLSIYDQNGKLPIWPLYSGETNCMPGYSSVPVIADAYLKGIGG FDANKALDYMISTATNPKQNGVKDFMHYGYIPADAIKEATSIQLEYAADDMGIALMAKKM GRMDVYHTFLKRALSYQTIFDSKINKIHPKMKDGSWYEPYDPFLANERDGVGDFCEGNGW QYTFMVPQDPDGLIKAHGGDAAFVKNLDELFVAEGDLGEGAPPDVSGMVGQYAHGNEPNH HTPYLYVYAGHPYKTAEKVRMLQNKFYTNEPDGYCGNEDCGQMSAWHIMSALGFYQVNPS NGIFVFGSPLFKKATIHLPGGKTFVITAPNNNDKNVYIKSAQLNGRNLKTSYITYNDVMK GGVLNFQMSNRPNKSFGKAKQHRPVSAK >gi|281306232|gb|ADEF01000008.1| GENE 57 61151 - 61876 1030 241 aa, chain - ## HITS:1 COG:Cj1172c KEGG:ns NR:ns ## COG: Cj1172c COG0217 # Protein_GI_number: 15792496 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Campylobacter jejuni # 1 238 1 234 235 182 45.0 7e-46 MGRAFEYRKATKLKRWGHMARTFTKIGKQIAIAVKAGGPEPENNPTLRAIIANAKRENMP KDNIDRAIKNALGKDQSDYKEVTYEGYGPHGVAILVDTLTDNTTRTVGDVRSVFNKFNGN LGTTGSLAFLFDHKSVFTFKKKENLDMDELILDLIDYGVEDEYDEDEEANEVTIYGAPTS FGDIQKHLEAEGFEVTGGEFTYIPNDLKDVTPEERETLDKMIEKLEEFDDVQTVYTNMQP E >gi|281306232|gb|ADEF01000008.1| GENE 58 61996 - 64458 2135 820 aa, chain - ## HITS:1 COG:FN2122_2 KEGG:ns NR:ns ## COG: FN2122_2 COG0072 # Protein_GI_number: 19705412 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Fusobacterium nucleatum # 155 820 4 652 653 370 32.0 1e-102 MNVSYKWLKEYVDFDLTPQEVADALTSCGLEVDALEEVQSIKGGLKGLYVGKVLTCEMHP NSDHLHITTVDLGKEQPSQIVCGAPNVAAGQKVIVADVGCVLYNGEESFTIKKSKLRGVD SYGMICAEDEIGVGTSHDGIIVLPEDAPVGQPAAEYYHLESDWVIEIDITANRSDALSHY GVARDLYAWLKQNGYATNLHRPNCDAFQVDNEDLPIDVQIENTQACKRYACISLTDCEVK DSPEWLQDKLRVIGLRPVNNIVDITNYIMMAYGQPMHCFDADMVEGNRIVVRTQPEGTKF ETLDGEEHTLGEHDLSICNAEHPMCIAGIFGGKGSGTYNSTRNVVLESAYFHPTWIRKSA RRHGLSTDASYRFERGIDPNGVIYALKQAAILCQQLAGGKVSMQIKDVYPEPIENAKVSL SYSYVNGLIGKEIGHDTIKEIVTNLEMEILQETAEELELSIPTYRVDVQRPCDVVEDILR IYGYNNVEIPQQLKSSLTILGEEDEKQHLENLIGEQLLGSGFHEILNNSLTKVAYYQDLN QYAEETTVKVMNPLSSDLGVMRQTLLFGGLESIARNVNRKNANLRLFEFGNCYHFDAARL DADNPINAYKQETHLGLWITGKRVEGSWAHADEDSSFFELKAYIENVFARLGVPAGLCIS EKSDNNIFSEGLTMKNRGGKPMVELGVVCPRLLKTAGVSATVYYADIHWSTVMKAIRKQK VEFKELSKFPAVSRDLALLLDQAIPFEKIEEIAFQTEKKLLKRVELFDVYEGKNLPEGKK SYAVNFILQDEQKTLNDKQIDAIMQKLIKNLTTNLGAELR >gi|281306232|gb|ADEF01000008.1| GENE 59 64630 - 64788 91 52 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|298482351|ref|ZP_07000537.1| ## NR: gi|298482351|ref|ZP_07000537.1| conserved hypothetical protein [Bacteroides sp. D22] # 1 38 1 38 66 65 92.0 8e-10 MSEFSLILGLQKKQENPTIDMAKIQIKSERLTPFGDYFQSWSNLTPHYLQIQ Prediction of potential genes in microbial genomes Time: Sat May 28 06:18:25 2011 Seq name: gi|281306230|gb|ADEF01000009.1| Prevotella timonensis CRIS 5C-B1 contig00092, whole genome shotgun sequence Length of sequence - 675 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 91 - 673 251 ## gi|282879898|ref|ZP_06288624.1| hypothetical protein HMPREF9019_2271 Predicted protein(s) >gi|281306230|gb|ADEF01000009.1| GENE 1 91 - 673 251 194 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879898|ref|ZP_06288624.1| ## NR: gi|282879898|ref|ZP_06288624.1| hypothetical protein HMPREF9019_2271 [Prevotella timonensis CRIS 5C-B1] # 1 194 31 224 225 378 100.0 1e-103 MGQRDSIYKLSEQIELDLSYFPTSFISEEGGEKILKSKQTPVLVIAQSKDADSILSNYLS DNTDTERFNKASKLIKQANRSKVKKAVRYIKMYALPNSQYKTLAPYVEKSVVHDSKIDSD GGHNLISLKKTLTGLVQHVQTESSPHEVVTKVLPWVHIVTGECRSGIDAIHKEIDERFLQ LYLNEYCWKFNRRW Prediction of potential genes in microbial genomes Time: Sat May 28 06:18:45 2011 Seq name: gi|281306201|gb|ADEF01000010.1| Prevotella timonensis CRIS 5C-B1 contig00017, whole genome shotgun sequence Length of sequence - 36729 bp Number of predicted genes - 31, with homology - 28 Number of transcription units - 14, operones - 7 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 105 - 419 386 ## BVU_0810 hypothetical protein - Prom 439 - 498 4.3 + Prom 1303 - 1362 6.0 2 2 Op 1 . + CDS 1388 - 2281 882 ## COG1284 Uncharacterized conserved protein 3 2 Op 2 . + CDS 2359 - 2544 87 ## gi|282879902|ref|ZP_06288627.1| conserved domain protein 4 3 Op 1 . + CDS 3052 - 3231 288 ## + Prom 3249 - 3308 5.8 5 3 Op 2 . + CDS 3331 - 6258 2849 ## BT_2316 hypothetical protein + Term 6281 - 6320 9.3 6 4 Op 1 4/0.000 - CDS 6856 - 8151 830 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 7 4 Op 2 . - CDS 8132 - 8590 483 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 8685 - 8744 5.6 - Term 8708 - 8752 5.1 8 5 Op 1 58/0.000 - CDS 8809 - 13122 4021 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit 9 5 Op 2 28/0.000 - CDS 13162 - 16974 2879 ## PROTEIN SUPPORTED gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 - Prom 17070 - 17129 3.0 - Term 17074 - 17132 6.0 10 5 Op 3 47/0.000 - CDS 17140 - 17520 513 ## PROTEIN SUPPORTED gi|153805949|ref|ZP_01958617.1| hypothetical protein BACCAC_00194 - Prom 17552 - 17611 3.1 11 5 Op 4 43/0.000 - CDS 17614 - 18132 596 ## PROTEIN SUPPORTED gi|29348145|ref|NP_811648.1| 50S ribosomal protein L10 12 5 Op 5 55/0.000 - CDS 18151 - 18843 1015 ## PROTEIN SUPPORTED gi|29348146|ref|NP_811649.1| 50S ribosomal protein L1 13 5 Op 6 45/0.000 - CDS 18864 - 19304 642 ## PROTEIN SUPPORTED gi|150003399|ref|YP_001298143.1| 50S ribosomal protein L11 14 5 Op 7 . - CDS 19367 - 19912 562 ## COG0250 Transcription antiterminator 15 5 Op 8 . - CDS 19924 - 20115 176 ## PRU_2141 preprotein translocase subunit SecE - Prom 20218 - 20277 4.8 - TRNA 20129 - 20204 79.3 # Trp CCA 0 0 - Term 20237 - 20277 0.7 16 6 Tu 1 . - CDS 20288 - 21484 1372 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 21506 - 21565 9.3 - TRNA 21566 - 21640 74.4 # Thr GGT 0 0 - TRNA 21647 - 21719 72.0 # Gly TCC 0 0 - Term 21603 - 21649 4.3 17 7 Tu 1 . - CDS 21690 - 21878 59 ## - Prom 21948 - 22007 1.9 - TRNA 21737 - 21819 62.0 # Tyr GTA 0 0 - TRNA 21855 - 21928 72.9 # Thr TGT 0 0 18 8 Op 1 . - CDS 22030 - 22329 382 ## PRU_2148 ribosomal subunit interface protein 19 8 Op 2 . - CDS 22352 - 23266 683 ## COG4974 Site-specific recombinase XerD - Prom 23315 - 23374 3.4 20 9 Tu 1 . - CDS 23379 - 23570 267 ## PROTEIN SUPPORTED gi|150003404|ref|YP_001298148.1| 30S ribosomal protein S21 - Prom 23704 - 23763 4.2 + Prom 23548 - 23607 7.5 21 10 Tu 1 . + CDS 23727 - 23846 56 ## 22 11 Tu 1 . - CDS 23787 - 25580 1674 ## COG0006 Xaa-Pro aminopeptidase - Prom 25806 - 25865 9.1 + Prom 25597 - 25656 6.3 23 12 Tu 1 . + CDS 25824 - 26816 1105 ## COG0039 Malate/lactate dehydrogenases + Term 26851 - 26907 6.2 + Prom 26846 - 26905 6.2 24 13 Op 1 . + CDS 26945 - 27790 597 ## PRU_2310 hypothetical protein 25 13 Op 2 . + CDS 27809 - 28978 986 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities + Term 29056 - 29096 8.1 - Term 29044 - 29084 9.7 26 14 Op 1 . - CDS 29148 - 29780 617 ## PRU_2171 hypothetical protein 27 14 Op 2 . - CDS 29826 - 30863 705 ## PRU_2172 hypothetical protein 28 14 Op 3 . - CDS 30904 - 32454 1320 ## PRU_2173 hypothetical protein 29 14 Op 4 . - CDS 32521 - 33366 834 ## PRU_2174 hypothetical protein 30 14 Op 5 . - CDS 33366 - 34829 1309 ## COG1262 Uncharacterized conserved protein 31 14 Op 6 . - CDS 34845 - 35798 608 ## PRU_2176 hypothetical protein - Prom 36039 - 36098 6.0 Predicted protein(s) >gi|281306201|gb|ADEF01000010.1| GENE 1 105 - 419 386 104 aa, chain - ## HITS:1 COG:no KEGG:BVU_0810 NR:ns ## KEGG: BVU_0810 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 104 1 113 113 105 50.0 7e-22 MEENNQSQGLQLELSPDVAEGKYANLVLISHSNTEFVLDFTSMLPGLPKPQVVSRVVMAP EHAKRLLLALQENMYKYEQQFGKVLLPEAAGKTIAPFDKHKGEA >gi|281306201|gb|ADEF01000010.1| GENE 2 1388 - 2281 882 297 aa, chain + ## HITS:1 COG:TM0177 KEGG:ns NR:ns ## COG: TM0177 COG1284 # Protein_GI_number: 15642951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 8 286 4 281 283 145 33.0 1e-34 MQRKKSTELKDYVILTLAMLIGSIGWTVFLLPNHIGIGGIAGISSVLFWGMNIPVELSYL GFNALLLSFALKILGWRFCLKTIYAALVFSLFVSLMRHLTNDQAIIRDEPFMAAVLGGVL LGSSVGLGLSCNGSTGGTDVIAAMIHKYHDISLGKIILCCDISIITSSYLVLHDWQQVLY GYVVLIVSSACVDKVVNMSRRSVQFFIISDKYKEIGHAINTQVPRGCTTINANGFYSGRD IKMLFVLAKQTESAMIFQTIDEIDPAAFVSQSSVIGVYGLGFDKFKAGRKKKEISHS >gi|281306201|gb|ADEF01000010.1| GENE 3 2359 - 2544 87 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879902|ref|ZP_06288627.1| ## NR: gi|282879902|ref|ZP_06288627.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 61 1 61 61 115 100.0 1e-24 MRNDSTFVTVVAVIQVSLFLKSLSPLFTLYDFGLPRYCFDGLKHFEDNPISIKVQYHQTS L >gi|281306201|gb|ADEF01000010.1| GENE 4 3052 - 3231 288 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKKQLKTYVSPKITILFIGEDCILAASPGVLGKGGDTNVTVESSTEDNEDTELFPEEP >gi|281306201|gb|ADEF01000010.1| GENE 5 3331 - 6258 2849 975 aa, chain + ## HITS:1 COG:no KEGG:BT_2316 NR:ns ## KEGG: BT_2316 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 125 837 115 783 888 249 31.0 5e-64 MKAAKIILVSCIGVSLGLFGSCADDLVDNGNDQGDKGTAVRFNIKDIQDVAQATTDAATT TGMPITHNAFEQTLNVQGLKTKDLVSQKLTVSGGQGGTCIIETTTAGVEADGPTHKKQGT RANISEKITEHFTTIGYRGTTAEGINGTPWFYNYDTNENGTLVKPVLWSWQQRFGKFYCV SPQATSGNAKLKISPSNYTGTPYVDFEAETDVTKQKDFMTACSGVVEYKIRNSAPTVNLT FRHALTAVCFKVGSNLSYNKTITKVEIINAKSKGRYTLGTDATGTGAAWTELSAPATFTL GGEGTLNVKTAVDVNQVIMGNKGDNYTFYMIPQPLAGVSVKIYFAGEATPLVFKLKGNWK AGTTKTYALNENTSTWQYQLEVKNPKQSAAYNEISAPSYDFFYSVKSYREMKDAEGKTVQ QPVPWKVVGYDSNGDGKYSMDEKPEWLIGGKDGYKTSGKGGTNFEEVWPYVKEDLEDRLK ERNEALKNAPAQGSAGSPYNLANATGAATVQNTANSYVISAPGTYRIPLVYGNAIHTTKA SPNVGVTNEGAYKRTMPPTNNTPSTYENNVLLNFKDHDGKDITDPWITKSNNGANAPDGA KLVWADVYGIVTNLAVSGTGDNAFVTFTVPKEAIENGNAVIAVTKNGTVVWSWHLWFAPK SALKTIACTNYQNHIYNFTSETLGWKYTEWKATPYLQKRSVKVKIQQTAGNAGKKQYGIV TLVQEAYAWMKGYATLYQFGRKDAFPGTDHVADGRCIENGKDASFAATIQHPEVLYTDNE SGKEDFSYCNLWSMNNDYHKAYMDGTFYTDETLWNDYSIVKTVYDPCPVGFHMPSTNAFT GFCKNGKRGADPSATEFYDWPILASPSSAPKYYTEGECANGYYGWEFYNRLNDPNATILF LYMNLREVKKEWGQKSVGIVNQTDLAYFWTAIPYSSDKGYAVWIQHSAQDIINTHTTNDV FEGNGIRPVSDTPHN >gi|281306201|gb|ADEF01000010.1| GENE 6 6856 - 8151 830 431 aa, chain - ## HITS:1 COG:umuC KEGG:ns NR:ns ## COG: umuC COG0389 # Protein_GI_number: 16129147 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Escherichia coli K12 # 3 431 2 422 422 301 39.0 1e-81 MYYAICDCDSCYVSCERVFRPDLKHKPVVVLSNNDGCVVARSKEAKRMGIPAGMPYYQLK EQYHDNEIAVFSSNYELYGELTARVMQLIREASPQSVRYSIDECFCVLPDMSFTDLKQWG ESLCHRILKYTGMPISIGIAHTKTLAKMASHYAKKYEGYQHCCIIDTDEKRTKALQQYPI SEVWGIGRRHATKLESMGIRSAYDFAMHDKSWIRSLFTVVGMRTWQELWGEDCVPIDEMT HKKSICTSRSFTGMLAEYDAVRTHIANFAARCAYKLRQQQSVASVVSVFVHTNRFREDLD QYWNSTSVQLLTPSNSTQVIVQAAAQGLQHIFASGYQYKKAGVVVMGLQSDAAIQTNFLD FHATQMEKHIKLDQVVDRLNKLMGTETVKLGAQQYKQKQQNGKAIVFADAIQHVFKSKNP TTRWSDIMELK >gi|281306201|gb|ADEF01000010.1| GENE 7 8132 - 8590 483 152 aa, chain - ## HITS:1 COG:STM1998 KEGG:ns NR:ns ## COG: STM1998 COG1974 # Protein_GI_number: 16765334 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Salmonella typhimurium LT2 # 23 141 22 136 139 112 44.0 3e-25 MGKIKIVKGEFAKQLSLQIAPAIKAGFPSPAEDYLQDRIDFNRDLIKHPEATFYGRVSGD SMVGVGIYDGDIAVIDRAEEPKDKDIVVAYVNGEFTLKFLNTAHAQEGYIELMPANENFK PIKVVNDDDFEIWGVVTFVIKNCKNLNVLRDL >gi|281306201|gb|ADEF01000010.1| GENE 8 8809 - 13122 4021 1437 aa, chain - ## HITS:1 COG:VC0329 KEGG:ns NR:ns ## COG: VC0329 COG0086 # Protein_GI_number: 15640356 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Vibrio cholerae # 1 1408 5 1362 1401 1307 48.0 0 MAFKKDTKIKNNFTKITISLASPEEILENSYGEVTKPETINYRTYKPERDGLFCERIFGP TKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERSGHIELVVPVAHIWYFRSLPNKI GYLLGMPTKKLDSVIYYEKYVVIKPGVMEGRKDGDGIEMNGSHVMDLLTEDEYLDILDHQ LDPNNDRLDDTDPNKFIAKMGAEAVYDLLANLDLDSISYELRDRANNDTSQQRKTEALKR LQVVEAFRQSKDINRPEWMILKIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNR LKRLMEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSESNRPLKSLSDSLKGKAGRF RQNLLGKRVDYSARSVIVVGPELKMGECGLPKLMAAELYKPFVIRKLIERGIVKTVKSAK KIVDRREPVIWDILENVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFN ADFDGDQMAVHLPLSNEAILEAQILMLQSHNILNPANGAPITVPSQDMVLGLYYITKIRP GAMGEGLSFYGPEEAIIAYNEKKCDLHARVKVVVKDLVDGKLQDRVVETSVGRVIVNGII PDEVGYFNDIISKKTLRTIIADVIKVVGMARACEFLDGIKNLGYRMAYVAGLSFNLDDII IPESKVGIVKKGQDEVNQIKANYEMGFITDTERYNQVIDAWTHVNNELGDVLMKEMTEND QGFNAVYMMLDSGARGSKDQIKQLSGMRGLMAKPQKAGAEGQQIIENPILSNFKEGMSVL EYFISSHGARKGLADTAMKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLICTALKSGDE IISTLYERILGRVSVHDIIHPTTGELIVAAGEEITEEKARLIDESPIESVEIRSVLTCES KHGVCKKCYGRNLATARMVQKGEAVGVIAAQAIGEPGTQLTLRTFHAGGVAGNAAANASI VAKNDCKIEFDELRTVPYVENDGVKDVKCLKVVSRLAEIRFIDPHTDIVLSTMNVPYGSS LYYKHGDIVEKGTLIAKWDPFNAVIVSEYEGKLKFNDVVAGKTYHAETDDTTGLTEKIIS DSKDKSLVPTCDIIGKKGEVLGTYNFPVGGHVVVEDGAEIKTGQTMVKIPRAVGGAGDIT GGLPRVTELFEARNPSNPAVVSEIDGEVTMGKVKRGNREIIVTSKTGEQKKYLVSLSKQI LVQEHDAVRAGTPLSDGVITPNDILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEII VRQMMRKVQINEPGDTTFLEQELVDKLDFAEENDRIWGKKVVINAGDSEVLKVGQIVTAR KLRDENSSLKRRDLRLVEVRDAVPATSTQILQGITRAALQTKSFMSAASFQETTKVLNEA AIHAKVDYLEGMKENVICGHLIPAGTGLRQWEKLIVGSKEEYERIEANRKNVLDFSE >gi|281306201|gb|ADEF01000010.1| GENE 9 13162 - 16974 2879 1270 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796927|ref|ZP_02190884.1| 30S ribosomal protein S12 [alpha proteobacterium BAL199] # 9 1270 16 1388 1392 1113 45 0.0 MATKSVDNRINFASVHNPVPYPDFLDVQLKSFKDFLQLETPPEERKNDGLYKVFSENFPI TDTRNNFVLEFLDYFIDPPRYSIDECLERGLTYSVPLKAKMKLYCTDPDHEDFGTFIQDV FLGTIPYMTDNGTFVINGAERVVVSQLHRSPGVFFGQGVHANGTTLYSARIIPFKGSWIE FATDINNVMYAYIDRKKKLPVTTLLRAIGYESDKDILQIFDLAEEVKVNKKNMNASIGRR LAARVLKSWNEDFVDEDTGEVVSIERNEVIMERETEITEDNVADIIDSGASTILLHRDSE LANKFAIIFNTLSKDPSNSEKEAVNYIYRQLRNADPADDASAREVFNNLFFSDKRYDLGE VGRYRINKKLGLETDMDIRVLTKDDIIEIIKYLIQLVNSNATVDDIDHLSNRRVRTVGEQ LSNQFSVGLARMSRTIRERMNVRDNEVFTPTDLINAKTITSVINSFFGTNPLSQFMDQTN PLAEVTHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIESPEGPNIGLISSLCIYA KINDLGFIVTPYRKVKNAKVDMNNDHIVFMTAEEEEDLIVGQGNAPLRPDGSFIRDYVKC RQDADYPVVDPDQVALVDVSPQQIASVSAGLIPFLEHDDGHRALMGCNMMRQAVPLLHND APIVGTGLEKQVCEDSRTMITAEGNGVVEYVDATTIRILYDRTEDEEFVSFEPALKEYRI PKFRRTNQNMTIDLRPICNKGQRVKAGDILTEGYATENGELALGRNLLVAYMPWKGYNYE DAIVISERVVRDDVLTSVHVDEYSLDVRETKRGMEEFTSDIPNVSEESTKDLDENGVIRV GARVEPGDILIGKISPKGESDPSPEEKLLRAIFGDKAGDVKDSSLKANPSLSGVVIDKKL FSRAIKTRESKKHDKVVLAKIDEEYEAKNNDLKDILVDKLLTLTEDKKSQGVKDYTGAEI ITKGSSFTAAALKNLEYDGIQSNDWTVDEHTNKLIQALIMNYIRKYKMLDAELKRRKFAI SIGDELPSGVLQMAKVYIAKKRKISVGDKLAGRHGNKGIVSKIVRAEDMPFLEDGRPVDL VLNPLGVPSRMNLGQIFEAILGAAGLKLGVKFATPIFDGAKLEDLSEWTEKAGLPHLCST HLYDGETGEKFDQPATVGITYFLKLGHMVEDKMHSRSIGPYSLITQQPLGGKAQFGGQRF GEMEVWALEAFGASHVLQEILTVKSDDTVGRSKAYEAIVKGDGMPAPGIPESLNVLLHEL RGLGLSVKLD >gi|281306201|gb|ADEF01000010.1| GENE 10 17140 - 17520 513 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|153805949|ref|ZP_01958617.1| hypothetical protein BACCAC_00194 [Bacteroides caccae ATCC 43185] # 1 126 1 124 124 202 83 3e-51 MADIKAIAEELVNLTVKEVNELATVLKDEYGIEPAAAAVAVAAGPAAGGAAGAAEEKTSF DVVLTEVGATKLQVVKAVKEACGLGLKEAKDLVDGAPATIKEGLSKEEAENLKKAIEEAG AKIELK >gi|281306201|gb|ADEF01000010.1| GENE 11 17614 - 18132 596 172 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29348145|ref|NP_811648.1| 50S ribosomal protein L10 [Bacteroides thetaiotaomicron VPI-5482] # 1 172 1 172 172 234 68 7e-61 MKKEIKDTIIVDLGEKLKEYPHFYLVDVTGLNAEETSQLRRKCFKNEVKMVVVKNTLLRK ALDASDVDFEPLYDCLVGSTAVMFAQTANVPAKLLKEYDKQDFPALKAAYAEESVYIGAD KLAELAALKSKNEVIAEIVALLQSPAKNVVSALQSGGNTIHGVLQTLGERPE >gi|281306201|gb|ADEF01000010.1| GENE 12 18151 - 18843 1015 230 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29348146|ref|NP_811649.1| 50S ribosomal protein L1 [Bacteroides thetaiotaomicron VPI-5482] # 1 230 1 230 232 395 85 1e-109 MSKLTKNQKSVADKVEAGKAYTLKEASELVKEITTTKFDASLDIDMRLGVDPRKANQMVR GVVTLPHGTGKVTRVLCLCTPDQEAAAKEAGADYVGLDEYIEKIKGGWTDIDVIITMPSC MGKVGPLGRVLGPRGLMPNPKSGTVTMDVAKAVKEIKSGKIDFKVDKSGIIHTSIGKISM TPEQIYDNAKEFISTVIKLKPTAAKGTYLKTIFISSTMSKGIKIDPKSVE >gi|281306201|gb|ADEF01000010.1| GENE 13 18864 - 19304 642 146 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003399|ref|YP_001298143.1| 50S ribosomal protein L11 [Bacteroides vulgatus ATCC 8482] # 1 145 1 145 147 251 82 3e-66 MAKEVAGLIKLQIKGGAANPSPPVGPALGSKGINIMGFCKEFNARTQDKAGKIIPVVITY YTDKSFSFVLKTPPAAVQLKEAAKVKTASAQPNRQKVASVTWDQVRTIAEDKMTDLNCFT VESAMKLVAGTARSMGITVKGDFPGK >gi|281306201|gb|ADEF01000010.1| GENE 14 19367 - 19912 562 181 aa, chain - ## HITS:1 COG:AGc3576 KEGG:ns NR:ns ## COG: AGc3576 COG0250 # Protein_GI_number: 15889255 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 8 179 5 175 176 131 39.0 6e-31 MADTKMNWYVLRAVNGKEAKLKEYIEAEMKHNTLLQQHVSQILIPMEKHAALRNGKRVEK EKISLPGYIFVEASLVGDVAHTLRFMPNCLGFLGGLDNPSPVPQSEINRMLGDVEETEIT NDVEVPYEVDEVVTVTDGPFSGFSGVIEEVNVEKHKLKVMVKIFGRKTPLELSFMQVQKE V >gi|281306201|gb|ADEF01000010.1| GENE 15 19924 - 20115 176 63 aa, chain - ## HITS:1 COG:no KEGG:PRU_2141 NR:ns ## KEGG: PRU_2141 # Name: secE # Def: preprotein translocase subunit SecE # Organism: P.ruminicola # Pathway: Protein export [PATH:pru03060]; Bacterial secretion system [PATH:pru03070] # 1 63 1 63 63 91 73.0 7e-18 MFKKIVNYCKACYDELAYKTTWPTSRELTHSAVVVLSASLVIALVVFCMDWCFQHLMGIV YPG >gi|281306201|gb|ADEF01000010.1| GENE 16 20288 - 21484 1372 398 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 395 1 407 407 533 65 1e-151 MAKEEFVRTKPHVNIGTIGHVDHGKTTLTAAISKTLHDKGFGGEEAKSFDQIDNAPEEKE RGITINSSHIEYETAKRHYAHVDCPGHADYVKNMVTGAAQMDGSILVVAATDGPMPQTRE HVLLARQVNVPRLVVFLNKCDLVDDEEMMELVEMELHELLEQYDFEEDTPIVRGSALGAL NGVDKWVDSVMTLMDTVDEWIQEPERDLDKPFLMPVEDVFSITGRGTVVTGRIETGKVKV GDEVQLLGLGEDKKSVVTGVEMFRKILSEGEAGDNVGLLLRGIDKDEVKRGMVVVHPGAI TPHDHFKASIYVLKKEEGGRHTPFGNKYRPQFYLRTMDCTGEITLPEGVEMVMPGDNVEI EVKLIYKVALNEGLRFAIREGGRTVGSGQITKILDDVQ >gi|281306201|gb|ADEF01000010.1| GENE 17 21690 - 21878 59 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVRIRQEALQLKRDKFVKTKGSYQSGQMGQTVNLLSFDFGGSNPSLPTPVEVFAEIAQLI EH >gi|281306201|gb|ADEF01000010.1| GENE 18 22030 - 22329 382 99 aa, chain - ## HITS:1 COG:no KEGG:PRU_2148 NR:ns ## KEGG: PRU_2148 # Name: yfiA # Def: ribosomal subunit interface protein # Organism: P.ruminicola # Pathway: not_defined # 1 98 1 98 99 128 80.0 5e-29 MEIKIQSIRFDATEKLEAFVEKKVGKLEKSLEDIQRVEVQLKVIKPATAMNKETSLTVVV PGATLFVDKTCDTFEEGIDLCVDAMRVKIQKFKEKSRSF >gi|281306201|gb|ADEF01000010.1| GENE 19 22352 - 23266 683 304 aa, chain - ## HITS:1 COG:SA1095 KEGG:ns NR:ns ## COG: SA1095 COG4974 # Protein_GI_number: 15926835 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Staphylococcus aureus N315 # 11 304 1 292 298 191 37.0 2e-48 MILPPWCKQVMTMIKEFLDYLRFEKNRSALTVKNYGKDLMAFEEFFRLLEPQLSWESIDS NIIRDWMESMMDRGNNATSINRRLSALRSFYRFALTRGLVDKDPTITIVGPKKKKPLPQF VKESEMDALLAFKLEVNQYKDVLAHTLVETFYCTGMRLAELIGLDEASIDFAHQSLKVLG KRNKERYIPFGAELKESLQYYISIRDQQVQRQSTAFFVDKDGQRLTHNQVRYAVNKCLST VTTLKKRTPHVLRHTFATAMMNHGAGLESVQQLLGHQSLTTTEVYTHTTFEQLKRVYMKA HPRA >gi|281306201|gb|ADEF01000010.1| GENE 20 23379 - 23570 267 63 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003404|ref|YP_001298148.1| 30S ribosomal protein S21 [Bacteroides vulgatus ATCC 8482] # 1 63 1 63 63 107 80 1e-22 MIIVPVKDGENIERALKRFKRKFDKTGVIKELRARQQYDKPSVLRRLKMERAIYVQKLRD AEE >gi|281306201|gb|ADEF01000010.1| GENE 21 23727 - 23846 56 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVKNKLILLTYRTFLQVYAFLNGLRSLSQPIIFLIREIG >gi|281306201|gb|ADEF01000010.1| GENE 22 23787 - 25580 1674 597 aa, chain - ## HITS:1 COG:FN0453 KEGG:ns NR:ns ## COG: FN0453 COG0006 # Protein_GI_number: 19703788 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Fusobacterium nucleatum # 6 597 2 584 584 462 40.0 1e-130 MAMKTEIAERLSRLRKVMKREHLGAFIFPCTDAHNSEYVPDHWKGREWISGFDGSAGVAV VTQTSAALWTDSRYFIAAEAQLQHTEYQLMRIGLSDTPSIAQWIGQELQQTDVTEVGMDG FVNTKAFVQQMVNDLRKEGGITLRTNFDPLAQIWNDRPAIPKNKVEIHPLQYAGESTSSK LTRIRKALRLQHADGIMLSALDDIAWTLNLRGTDVHCNPVFVAYLLISTHEAVLYVDPEK LTEEVQSYLKAEGVSTRSYDEVTQAGRHYPDYTILLDAEQLNAHIFSVFQKQHVITASSP VPAMKAVKNKTEIAGFKAAMERDGVAMVKFLKWLKPAVEAGGQTEISLDEKLTALRAEQD LYRGLSFDTIVGYEAHGAIVHYEATAETDIPVQPKGLVLIDSGAQYLDGTTDITRTIALG PLTEEQRRVYTLVLKGHIQLELCKFPAGASGTQLDALARQAMWREGMNFMHGTGHGVGSY LNVHEGPHQIRMEYKPAPLRAGMTVTDEPGLYLEGKFGVRIENTLLITPYLKTAFGEFLQ FEPLTLAPIDTTPIIIEMLLPEERNWLNAYHEQVFQRLSPYLSDKENDWLREATQAI >gi|281306201|gb|ADEF01000010.1| GENE 23 25824 - 26816 1105 330 aa, chain + ## HITS:1 COG:Ta0952 KEGG:ns NR:ns ## COG: Ta0952 COG0039 # Protein_GI_number: 16081997 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Thermoplasma acidophilum # 4 268 1 267 325 114 28.0 2e-25 MAFLTNEKLTIVGAAGMIGSNMVQTALSMGLTNNICLYDVFSPEGVAEEMRQSGFDAVNI VATTDVKEAFTDAKYIISSGGAPRKAGMTREDLLKGNCEIAEGLGKDIKKYCPDVKHVVI IFNPADLTGLVTLLYSGLKPSQVTTLAALDSTRLQSALAKKFNVMQTEVKGAATYGGHGE QMAVFGSHVTISGKPLTEIIGTPEFSNEEWEQMKKDVTKGGAKIIELRGRSSFQSPAYLS VEMIRSVMGGEPFRFPVGTYVSTDKYNHIMMAMKTTLDKTGAHYEVPQGTSEENAKLDAS YEHLCKMRDELVTLNIVPEISEWSKINPNL >gi|281306201|gb|ADEF01000010.1| GENE 24 26945 - 27790 597 281 aa, chain + ## HITS:1 COG:no KEGG:PRU_2310 NR:ns ## KEGG: PRU_2310 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 281 1 281 281 410 67.0 1e-113 MRLIKNKEFGGERPLFGIHDVRLENVNITEGESGIKKCHHIEADHCRFMGKYPWWHVDHS LITNCYFEVGARSAIWYSNNMDMRDTVIDAPKLFREMNNLKLTNVVINDADETFWKVNGL TLRNVTLHEGTYPVMFCQDVDVDGWESDSKYVFQYVKNAVIRNAKITTKDSFWETENVTI YDSELNGEYLGWHSKNLKLVNCHITGEQPLCYCQNLILENCTFGEDCDRMFEESTVQADI RGAVTNIKNPTSGKIVADAIGSVTIDEHVLQPNNCEIIIRK >gi|281306201|gb|ADEF01000010.1| GENE 25 27809 - 28978 986 389 aa, chain + ## HITS:1 COG:YPO3006 KEGG:ns NR:ns ## COG: YPO3006 COG1168 # Protein_GI_number: 16123185 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Yersinia pestis # 1 378 1 382 393 360 44.0 2e-99 MKYDFDKIIPRRGTNSVKWDVAKEDGVIPMWVADMDFQAAPYIRQALKERIDHGVFGYTL VPNSYYESIISWFDRRHQWHIDRNWILYTSGVVPAISAIIKALTEPGDKVLVQTPVYNCF FSSIRNNGCTTAENALVRKGNSYEIDFDDFERLAADEKTKVFLLCNPHNPAGRVWTPDEL SRMNDICLRHGVKVISDEIHCELVMPGYKFTPFAAISKACQDNCITTNSPTKSFNIAGLQ IANIITNNDTIKRKIDRAININEVCDVNPFGVIALQAAYNEGETWIDQLNLYLWENYKVL KDFFQEHLPKLQVLKLEGTYLVWVDISATGLKADELTNELLQQGKVMVNSGTLYGKTTGE DYLRLNIAMPRSLMLEALQRIAQVLQPKL >gi|281306201|gb|ADEF01000010.1| GENE 26 29148 - 29780 617 210 aa, chain - ## HITS:1 COG:no KEGG:PRU_2171 NR:ns ## KEGG: PRU_2171 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 3 210 2 204 204 175 44.0 9e-43 MKKRILSLITVLTMVAVLPTSAQLKFGVQGGFNLSEMSLDKNLFNTSNRAGFFIGPTVKF SLPLTGLGMDLSALYNREETKVEGVNTTTFNTVLKQQSLIVPVNVRYSIGLSDVANIFVF GGPQVGFNIGDKVKEISNLPDQAAEWSLNSSNFSVNAGLGVTFATHFQVTANYNVGVGKT GDITFKNVKESVENHKTRANSWRIGLTYLF >gi|281306201|gb|ADEF01000010.1| GENE 27 29826 - 30863 705 345 aa, chain - ## HITS:1 COG:no KEGG:PRU_2172 NR:ns ## KEGG: PRU_2172 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 3 345 2 351 351 347 54.0 3e-94 MKKTILLIGIIFCAVQLTIAQPPARRAEQQRTQRNNAQTLSTRAQLSFPTAPKMSEDVVW RRDIYREIDLTKDANAGLYYPVEPMGTQMNLFCYIFKLMMTGNIRAYEYRLDGNESFEDS ARVKPLAFLDNYHVFYERTDRGIRIDDSDIPSREVTAYYLKESAYYDQATATFHTKVLAL CPILKRVDDFGDGTTSYPLFWVKYDDLAPFLSKQTIMTSNLNNAAIMSIDDFFTKNKYQG KIYKTNNMLGQTLAQYCPTDSAMNREQQKIEKEIQAFEKNMWGNAARKDSLDSIAKLNPK DSKSKRVRRSRSPRDAKATLKSNRSQKSSSSNSSAARVTVRRQRH >gi|281306201|gb|ADEF01000010.1| GENE 28 30904 - 32454 1320 516 aa, chain - ## HITS:1 COG:no KEGG:PRU_2173 NR:ns ## KEGG: PRU_2173 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 516 1 519 519 663 64.0 0 MAIKKRPVSPRQRMINLMYVVLMAMLALNVSTEVLEGFAVVEESLNRTTANSSRENRSIY RRLSDQVKANPAKVQAWFDKATQVKRMSDSLYYFVQELKEEIVREADGPHGDIYNIEHKD DLEAASHVMLAPGVGKGKMLYDRVNRYREQILKMIPDEHQRQMIASNLTTKRSKRAQAMG KNWQEYMFENMPVSAAVTLLSKLQSDIRYAEGEVLHTLVANVDLKDIRVNKLEAFVIPES KTVVSGDRFSAQIVMAAVDTTRQPDIYIGGRKINLHNNTYQFTTGGVGEHSFQGYITMTN GSGETIRRNFSQKYAVVAPSATVSADLMNVLYAGYDNPISISIPGVPLTAVSASMTGGGF RMVAAGRYIARPTTVGKDVTIQVVSNQGGGARPVGKYTFHVRKLPDPIAYIALGSDRFKG GGLSKASLMGATGIQAAIDDGLLDIQFKVVNFETVFFDNMGNAVPMASNGARFSDRQRNA FRQLSRNKRFYISRVTAVGPDGLTRKLPASMEIIVK >gi|281306201|gb|ADEF01000010.1| GENE 29 32521 - 33366 834 281 aa, chain - ## HITS:1 COG:no KEGG:PRU_2174 NR:ns ## KEGG: PRU_2174 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 17 271 1 238 238 252 57.0 9e-66 MAGYSKYNIIYRLQKWMDSVPGQTFLNYAYSWGASLVILGALFKLTHLKGGNLMLFIGMG TEVVVFFLSAFDRPFDKTADGRELPTRVTEEYLETGKVVYDSQLGESSAAQPVPAEAPHA SSYGGPGHPTAGSVVVPSPVAAATGTDIPVSDSSETAGDSSQWVQAQQQSSPELIEAQSK YVTELKNLTETLGKVSEQSVKLTRDSEEMENLNRTLTGICKVYEMQLKGASQQIGTIDQI NNQTRKMAQQIEQLNKIYARMIEAMTVNMRAANPGLDPSQE >gi|281306201|gb|ADEF01000010.1| GENE 30 33366 - 34829 1309 487 aa, chain - ## HITS:1 COG:XF0752_2 KEGG:ns NR:ns ## COG: XF0752_2 COG1262 # Protein_GI_number: 15837354 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Xylella fastidiosa 9a5c # 285 474 96 273 273 79 31.0 1e-14 MNVTDMKTKVSMVMGMVSLMILTGCFGGRSASSVGRGGEVVGVGGKAFSEPTPYGMTRID RGYLKMGLEKQDSLWGKEMTQKDISVDGFWMDETEVTNSKYKQFVAWVRDSILRTRLADP AYAGDETYLITEDKNGDPVPPHINWKKPLPRRMNEDEQRAVESMYVTNPVTGEKLLDYRQ LNYRYEIYDYTTAALRRNRMIPDERNLNTDQTVDPDEVVMISKDTAYIDDTGRIVSETIN RPRSGPWDFLNTYIVNVYPDTTCWVNDFQNSDNETYLRNYFSNPAYNDYPVVGVTWEQAN AFCAWRTDYLLKGLGAEARYIQRYRLPTEAEWEYAARGKEGNEFPWDNKAVMSGEGCFFA NFKPDRGNYTKDGNLITSKVGIYGANSNGLYDMAGNVAEWTSTIYTEAGVDAMNDLNPQL EYKAALEDPYKLKKKSVRGGSWKDPESYIRSAWRTWEYQNQPRSYIGFRCVRSLANTTST KQKKGRK >gi|281306201|gb|ADEF01000010.1| GENE 31 34845 - 35798 608 317 aa, chain - ## HITS:1 COG:no KEGG:PRU_2176 NR:ns ## KEGG: PRU_2176 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 14 317 11 312 312 372 60.0 1e-102 MRYPFVQRRKIYFLWLLLLSVSAVRAQYDASFSHYFDMQPSFNPAAVGKQDQLNINAAYA MSMVGFQNNPKTMYAAADMSFYFLKAYHGGGVQLMNDQIGLFTHQRLAAQYALRFKLFGG KLSAGVQAGMLSESFDGTKLNLADANDPAFTNTQVKGNALDIGAGLYYFHSSWYVGISAQ HLTSPVIDLTEKNQFHIDATYYLTAGYNIRLRNPFLTIQSSVLVRTDGVAYRGDVTARLV YQHEKRMMYGGVGYSPTNSVTFLVGGSFHGAVLGYSYELYTSAIQPGNGSHELFVGYQMD VNLAKKGRNKHKSVRLL Prediction of potential genes in microbial genomes Time: Sat May 28 06:19:55 2011 Seq name: gi|281306170|gb|ADEF01000011.1| Prevotella timonensis CRIS 5C-B1 contig00052, whole genome shotgun sequence Length of sequence - 36235 bp Number of predicted genes - 39, with homology - 32 Number of transcription units - 16, operones - 8 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 5 - 178 175 ## PG0851 hypothetical protein 2 1 Op 2 . + CDS 250 - 558 325 ## PG0850 excisionase family DNA-binding protein 3 1 Op 3 . + CDS 577 - 1356 230 ## PG0849 hypothetical protein 4 1 Op 4 . + CDS 1341 - 2345 364 ## PG0848 hypothetical protein + Term 2404 - 2444 2.0 - Term 2392 - 2432 2.0 5 2 Tu 1 . - CDS 2456 - 3910 1267 ## COG4646 DNA methylase - Prom 3976 - 4035 6.8 + Prom 3974 - 4033 4.8 6 3 Op 1 . + CDS 4241 - 5461 647 ## COG0582 Integrase 7 3 Op 2 . + CDS 5466 - 7400 1714 ## BF1987 tyrosine type site-specific recombinase + Term 7442 - 7506 2.3 - Term 7428 - 7492 2.3 8 4 Tu 1 . - CDS 7510 - 8949 1056 ## COG4690 Dipeptidase + Prom 9218 - 9277 3.5 9 5 Op 1 . + CDS 9352 - 9489 145 ## 10 5 Op 2 . + CDS 9555 - 9653 62 ## 11 5 Op 3 . + CDS 9613 - 9876 137 ## BF2150 putative IS element + Prom 10006 - 10065 5.3 12 6 Op 1 . + CDS 10267 - 10656 235 ## 13 6 Op 2 . + CDS 10702 - 13092 1715 ## COG3209 Rhs family protein 14 6 Op 3 . + CDS 13100 - 13504 262 ## gi|282879939|ref|ZP_06288663.1| putative lipoprotein 15 6 Op 4 . + CDS 13473 - 15434 1566 ## COG3209 Rhs family protein 16 6 Op 5 . + CDS 15431 - 15877 205 ## 17 7 Tu 1 . + CDS 16229 - 18151 1703 ## COG3209 Rhs family protein + Prom 18180 - 18239 2.2 18 8 Op 1 . + CDS 18270 - 18557 185 ## 19 8 Op 2 . + CDS 18557 - 19000 245 ## gi|302483273|gb|EFL46283.1| hypothetical protein HMPREF9296_0764 20 8 Op 3 . + CDS 19061 - 21094 1506 ## COG3209 Rhs family protein 21 8 Op 4 . + CDS 21096 - 21584 235 ## gi|282879943|ref|ZP_06288667.1| hypothetical protein HMPREF9019_1565 22 8 Op 5 . + CDS 21588 - 21875 171 ## gi|282879944|ref|ZP_06288668.1| hypothetical protein HMPREF9019_1566 23 8 Op 6 . + CDS 21872 - 22474 479 ## 24 8 Op 7 . + CDS 22488 - 24206 1552 ## COG3209 Rhs family protein + Prom 24233 - 24292 6.9 25 9 Op 1 . + CDS 24333 - 25622 987 ## PG0838 integrase 26 9 Op 2 . + CDS 25635 - 26915 304 ## PROTEIN SUPPORTED gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 27 9 Op 3 . + CDS 26928 - 28049 803 ## BVU_1447 hypothetical protein 28 9 Op 4 . + CDS 28067 - 28795 381 ## gi|282879949|ref|ZP_06288673.1| hypothetical protein HMPREF9019_1571 29 9 Op 5 . + CDS 28805 - 29371 163 ## ZPR_0569 metallophosphoesterase domain-containing protein 30 10 Op 1 . - CDS 29598 - 29798 219 ## gi|288926508|ref|ZP_06420427.1| conserved hypothetical protein 31 10 Op 2 . - CDS 29820 - 30746 688 ## PG0868 mobilization protein 32 10 Op 3 . - CDS 30743 - 31090 310 ## PG0869 mobilization protein - Prom 31110 - 31169 2.0 33 11 Tu 1 . - CDS 31193 - 31426 78 ## gi|281426344|ref|ZP_06257257.1| putative mobilizable transposon, excision protein - Prom 31540 - 31599 1.9 + Prom 31540 - 31599 5.1 34 12 Tu 1 . + CDS 31637 - 32716 549 ## COG3547 Transposase and inactivated derivatives + Term 32897 - 32940 3.0 35 13 Tu 1 . - CDS 32992 - 33678 253 ## PG0841 mobilizable transposon, excision protein, putative - Prom 33734 - 33793 3.2 36 14 Op 1 . - CDS 33861 - 34910 642 ## PG0842 mobilizable transposon protein 37 14 Op 2 . - CDS 34910 - 35218 222 ## PG0843 hypothetical protein - Prom 35299 - 35358 5.2 + Prom 35169 - 35228 7.2 38 15 Tu 1 . + CDS 35282 - 35449 75 ## - Term 35376 - 35410 1.1 39 16 Tu 1 . - CDS 35528 - 35857 202 ## gi|302482260|gb|EFL45291.1| transposase, IS116/IS110/IS902 family - Prom 35895 - 35954 5.1 Predicted protein(s) >gi|281306170|gb|ADEF01000011.1| GENE 1 5 - 178 175 57 aa, chain + ## HITS:1 COG:no KEGG:PG0851 NR:ns ## KEGG: PG0851 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 57 305 361 388 99 84.0 5e-20 MHVYRGEKSKEDKEKRKTDELVGVIREAFRNSFKLTYQELCDVLMREMEIKDRTAKK >gi|281306170|gb|ADEF01000011.1| GENE 2 250 - 558 325 102 aa, chain + ## HITS:1 COG:no KEGG:PG0850 NR:ns ## KEGG: PG0850 # Name: not_defined # Def: excisionase family DNA-binding protein # Organism: P.gingivalis # Pathway: not_defined # 1 102 1 102 102 141 74.0 8e-33 MPYLEQITENDWCKRLFDRLRTVENKIDQLLLLKEQSVDTTIHPPLKPEYLDIIDVSKIL KVEQKTIYNWVWAHKIPYLKANGRLLFLREEIDEMLRKRDGW >gi|281306170|gb|ADEF01000011.1| GENE 3 577 - 1356 230 259 aa, chain + ## HITS:1 COG:no KEGG:PG0849 NR:ns ## KEGG: PG0849 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 4 259 1 256 256 365 71.0 1e-100 MHILLCKCLQLHNKISIFAPRLTYMTSKGIKKKISEFEMGKVFKLEDLGLLHTEHQAAVM TLRRLVEKGEIERLSPGLYYKPKITRFGEVGPTMNERFRDLLYKDNRPIGYLTGFYAFNL LGLTTQQSSTLEIGTNFPRRNRKRGIYAVRFVIQKNEINKDNIDMLRLLDCLKWIKKIPD TTVDQSYSQLKNLVKTYSKKEQERIVELSMQYSPLTRALLGSMLSDKSLTDKLYQSLSPL TQFRIGLSSSLAKEQWNIQ >gi|281306170|gb|ADEF01000011.1| GENE 4 1341 - 2345 364 334 aa, chain + ## HITS:1 COG:no KEGG:PG0848 NR:ns ## KEGG: PG0848 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 329 1 329 332 459 70.0 1e-128 MEHTIDKQLHLEKENFRDLIHATSEELAIPIQLVEKDYYISSILRALYESSYTEQIVFKG GTSLSKAYQLINRFSEDVDFAVISENMSGNQVKMLLSHLMKEVTANLKEDRCFGDISKGS KYRKQAFLYETQVGLDELSNPVPARIIVEISAFANPFPHERRIIEPFVTTFLRKKGMSNF IEQYNLVPFELNVLSLRQTLCEKIVSLIRFSMSDTPLASLTSKVRHFYDLDALLSIEQLQ NYIFSDAFVSDLTTLIRHDQQAFDEPQGWRLLNNLNQSPLIKDFENIWSSLTPKYIENLS KIAYRTIPSPDNIKSSFTKILHSIESIDLGWQEN >gi|281306170|gb|ADEF01000011.1| GENE 5 2456 - 3910 1267 484 aa, chain - ## HITS:1 COG:AGpT188_2 KEGG:ns NR:ns ## COG: AGpT188_2 COG4646 # Protein_GI_number: 16119916 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 14 270 900 1150 1315 123 31.0 8e-28 MIDENAYSDHIDNKASHCAKMLNDYYQKYDAQKGTQFVFSDLGTYKPSEWNVYSEIKRKL VEDYHIPSYEIRFIQECKNEKAKKAMVEAMNRGDIRIIFGSTSMLGTGVNAQQRAVAVHQ LDTPWRPSDLEQRNGRAVRKGNLIAKEFADNKVDVIIYAVERSLDSYKFNLLHNKQLFIN QLKTNTLGSRTIDEGSMDEDSGMNFSEYVAVLSGNTDLLEKARVDKKITTLESERKNFLR ERDAATGKLAEIESSVSFHSDKIKEAKADLACFEQRVERDKEGLPVNKLTIKGVEDSTDI KVIAARLHEIEEKARTKSEYNKIGEVYGFSIMVKTESTSKDLFDCSVNRIFVKGQESIYY TYNNGKLAADPKLACENFVNALERIPKVIESHEKEKEKVVANKEIYTAIANGTWKKEDEL RSLKSEAAELDRKIALTITANKENKEEQENSLSDNEISTSIKNGNEQAQEADNRSLGFRP KWRH >gi|281306170|gb|ADEF01000011.1| GENE 6 4241 - 5461 647 406 aa, chain + ## HITS:1 COG:TM0967 KEGG:ns NR:ns ## COG: TM0967 COG0582 # Protein_GI_number: 15643727 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Thermotoga maritima # 111 387 1 247 253 63 24.0 7e-10 MKENKLKVSFFVQAKRTDKKGLVPVIGRISVGRTHSGFSTKCKTPLTLWDSRKQRLIGKS AMAVSVNQKLGECTALIHARFHELCEREETFTATDVRDAYQGQIHCQALLLESFGEYLTQ TKERIGIDRALKTFKLRTYQLSLLREYMRKKHKVSDIPLSQLDKAFIEGFEYYLTIDRKL KRSSISSTLSTLQTIVRMAVKKGVLDFYPFLGYSYERPKGEPRSITKEELEHIIDLEIEW ENYRIVRDLFVFSCFTGLAISDVRNLREENIVTEEGELCIKGRRMKTKTPYRVQVLPPAL TIMNRYRGIRAGFVFDVPTTDIVLNGMHYIQRNIGMETPLTFHMARHTFASIITLSAGVP IETVSRMLGHTNLRTTQVYAAVSSERIHWDMQAIQQRIQDTFTLKL >gi|281306170|gb|ADEF01000011.1| GENE 7 5466 - 7400 1714 644 aa, chain + ## HITS:1 COG:no KEGG:BF1987 NR:ns ## KEGG: BF1987 # Name: not_defined # Def: tyrosine type site-specific recombinase # Organism: B.fragilis # Pathway: not_defined # 4 399 12 406 435 281 38.0 8e-74 MARSTFKTLFYINRSKEKKNGKCPIMGRITIDGEQVQYSTGKEIAPELWDSRKGRCKGIG EETKEINRYLQTKEEQAKAKYQELVWQRGYITAELLKRELMEEDNPKGFLLEEARLFIEE KRPCVGLTIAKPTFANYIYAAQLIKSYLRERLGLEDIRYSLLDYGFIEGLDFYLKSERNL SLATIQVAVIFLRKLIGIGQQKKYIRIDPFADYKAEQPHRTRRYLTTEELQRILQTPIID KQFERARQLFLFCAFTGLARVDMQRLKLKHIIRNADGTAEIRIKRQKTNVEAIIPLLPIA KQILSLYIKDKKADELIFPNLTIRKASLACVNIGQICRIDKGLTFHMARHTFSTTICLSN GISMETLSKMLGHSNIGTTQIYGKITDHKIQEDMTALTAFTWQRNADEKSIAFTAHPKAR YIKFRFEEAVGGFGSGAEMYVFRRPNTEGEIQGDINRDKRVDENDLTSYMNYTGLRRDDA DYDYVSIGDINRNGLIDAYDISCVGVELDGGASQRNDQVRGSLELIAPKTFKAGDDIQIQ VVGKNLHFVNALSFALPYNADELEYRGVTLQGMKEMVNLTYDRLHTSGQKALYPTFVNRG NNFLLDEGAPKLFIIKFHAKKSGKLNLKMHDGMLVDRNLGVSNF >gi|281306170|gb|ADEF01000011.1| GENE 8 7510 - 8949 1056 479 aa, chain - ## HITS:1 COG:STM1094 KEGG:ns NR:ns ## COG: STM1094 COG4690 # Protein_GI_number: 16764452 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Salmonella typhimurium LT2 # 15 476 20 484 489 449 46.0 1e-126 MRQKKHQVSELPSECTTIIVGREMTADGSMIVARSEDWDAMEAKNYELYEDTKEGPKEFI ALDSPFRCELPKEALGYSALAPFNLPHHWGSAGFNTASVGMSATESIFSSDEVLKHDPLV ETGLAENAVFNIVLPYVHTAREGVERLGMLIEKHGIAEGFGIGFVDAQEIWYLETACGHR WLACRMPKEQYFVTGNQSRFRQYDPNDKENYLASADLIEFAEKHGLHDPKKGEFDFHVSY ARDVKLDTTYNYPRVWGLQQMFSPAIKNDVTKNTFPVYAKAEKPISITDLRTAFRFHYDN TEHDPYLHSNPKEPYRPVSIFRTTQTHILQVRPELPQAIGCVAYVAMGMADLGLFLPLYQ GISSYPVEYTQGTDQSSADSAYWKFRKVMVLGMVNYNKYAPMIKETYRKFEEETDQRQRE MEEEYLRIYKTQPLRAKDMLQEFSDKVLTRALCVADKLQERLFTELTKDIQAEYLFHGA >gi|281306170|gb|ADEF01000011.1| GENE 9 9352 - 9489 145 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMQIGEQSHVHWAPSSYRLDFKSIDIADLFSVNMLIDSDFKALKT >gi|281306170|gb|ADEF01000011.1| GENE 10 9555 - 9653 62 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKGLLTHTGSDGYIYNIIHNDTTGGTCQAHKA >gi|281306170|gb|ADEF01000011.1| GENE 11 9613 - 9876 137 87 aa, chain + ## HITS:1 COG:no KEGG:BF2150 NR:ns ## KEGG: BF2150 # Name: not_defined # Def: putative IS element # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 3 78 122 198 315 87 58.0 2e-16 MTQQGELAKHTRHKMKYRHRPKCRHLPIKDRVSIHERSKEVDGKRFGDFEMDLIVDPDQH AILTLVEKSTSMLLMQKLPNSQSLWQR >gi|281306170|gb|ADEF01000011.1| GENE 12 10267 - 10656 235 129 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSLVLSHCKAQEELSLTYIGYQYKGTQNRSFLNKELILKTDGDTIRMNLRLPYDSIHHNV IDRGLLYNCHLKKGVKYIFILQKKCIFDIPSFFNSYYRTNTIPDKNDCSKFIEIKKTQIM TTEGIMEDM >gi|281306170|gb|ADEF01000011.1| GENE 13 10702 - 13092 1715 796 aa, chain + ## HITS:1 COG:MA2045 KEGG:ns NR:ns ## COG: MA2045 COG3209 # Protein_GI_number: 20090892 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Methanosarcina acetivorans str.C2A # 24 291 1647 1878 2217 71 27.0 5e-12 MAVSIHTKRVTKPFMASVADIRTYVYGATYDSWNRVQTMTYPDGEVVIYHYNAAGQVESM TSNRQGRQSVIVDRIGYDKEGHTVYTKLGNGTETTYTYDKQRERLQVMNLTADGQTVMEN RYRYDAVDNILGITNAANPTSLTKLNKAKLGGRSSHTYEYDELNRLVHANGKAKRASYDM VMSFGRMSEPLTKIQKVDSTTTAKSYNFAYKYEDSNHPTAPTQIGYDHYTYDANGNPTLV TNDSTNTTREMYWDEDNRLMVLSDNGKTSRYTYNATGERIMKSYGTMEGVYINGAPQGIT LTNVDFRLHQDKMSKLFCAWFALKFHETDNFTLYPASILSVNKNRFTKHYFLGDKRIASR IGTGMFNNVYGRNGSYVTAGQQDYAERMNQIQKQKEAYYKQQGIAPGVPTMKGAYGDPEN TKRGYNSIIDTLGNHDVPQGWIQTPRPNTTPNTNPGPPVSWNDPSNPDDPQAGYGYIPND TTKEETFFYHSDHLGSTSYITDDKANITQYDAYLPYGELLVDEHSSSEDLPYKFNGKQFD DEIGLYYYGARYMDPIISLWYGVDNLTEKYVSVSSYTYCDGSPIANIDVMGMFPKGIVVK HVETVVLYQAVGSANTLMGIPHEVTYYTFTESAAHLLSLVANVPITYVKNARLEEFISQP EGNCITIGGSPNNARILVSPYYLDNSKGGQDYDLWFRQFSHEVGHTKQIARDKGLTKYLL KTIAGYIKAGNHDDALREIEAEQGTKTYNAFRGFVKTHFKASVENLFKNDKLKGKDKIEQ INKWWNEFKKQTSNKK >gi|281306170|gb|ADEF01000011.1| GENE 14 13100 - 13504 262 134 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879939|ref|ZP_06288663.1| ## NR: gi|282879939|ref|ZP_06288663.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 134 15 148 148 246 99.0 2e-64 MVTIVFTLCACDNHDFTFDEEKQTFYVYDMLSFYIEPDGEKELFYSYDIELKEKKKEKGI DTLDLNNISSKYQVEACFPNIDTVVNNPKRAVLTPDTRYRVLHMGMGRVYGVKYYQTDST GKLKNEEEPKSSTR >gi|281306170|gb|ADEF01000011.1| GENE 15 13473 - 15434 1566 653 aa, chain + ## HITS:1 COG:MA2043 KEGG:ns NR:ns ## COG: MA2043 COG3209 # Protein_GI_number: 20090890 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Methanosarcina acetivorans str.C2A # 323 432 122 229 440 66 35.0 2e-10 MKKNQSQVQGKETTLGERPIRIYIYEALNRLIHATGKAKNASYDMAMTFGRMSEPLTKVQ KVDSTMTAKSYNFAYKYEDSNHPTAPTQIGHDHYTYDANGNPTLVTNDSANTTREMYWDE DNRLMVLSDNGKTSRYTYNAAGERIMKSYGTMEGVYINGAPQGITFHETDNFTLYPASIL SVNKNRFTKHYFLGDKRVASRIGTGLFNNVYGRNGSYVTAGQQDYAERMNQIQKQKEAYY KQQGIAPGVPTMKGAYGDPENTKQGYNSIIDTLGNHDVPQGWIQTPRPNTTPNTNPGPPV SWNDPSNPDDPQAGYGYIPNDTTKEETFFYHNDHLGSTSYITDDHANITQYDAYLPYGEL LVDEHSSSEDMPYKFNGKELDEETGLYYYGARYMDPKISMWLGVDPLTEKYISVSGYVYC IGNPIRFVDPNGCWHWEKNGNLHADRKDNTKTLAQFLGTSQKDVLQILNRNNIRTTKGGN IAVRNLSKLSLDKGSLYTVKADLSGTVLEQTPNLNIVAPESAKGTQQDQLAISHYYFGNG EPADVGDIATNLLINTKTFQDNLKAVTTKVRDKNSFDVDMTALVFHIGKTGVSYAVHPGK QTSHVDFTLFRKPNYVDGFRDPLDLGFELGGTPYDYKARTVTYYFKPVLTTKK >gi|281306170|gb|ADEF01000011.1| GENE 16 15431 - 15877 205 148 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKSICIIGIVLFLIFIWVDYRNYYIGKSFINYHILPFDLRTECLTYKKKVNGKYVSIMD FSFVYNKSEYLGNGSAIPNDTYHPLFYVKSIIGYYYNKEDMIIKCEDTKFVVHYLRPTLR NGEVAFNEITIINKKELLNYKYISTSMN >gi|281306170|gb|ADEF01000011.1| GENE 17 16229 - 18151 1703 640 aa, chain + ## HITS:1 COG:MA2045 KEGG:ns NR:ns ## COG: MA2045 COG3209 # Protein_GI_number: 20090892 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Methanosarcina acetivorans str.C2A # 10 320 1647 1903 2217 70 26.0 1e-11 MASVADIRTYVYGATYDSWNRVQTMTYPDGEVVTYHYNAAGQVERLTSNKQGRQSVIVDR IGYDKEGHTVYTKLGNGTETTYTYDKQRERLQVMNLIADGQTVMENRYRYDAVDNILGIT NAANPTSLTKLNKAKLGGRSSHTYEYDELNRLVHANGKAKRASYDMVMSFGRMSEPLTKV QKVDSTTTAKSYNFAYKYEDSNHPTAPTQIGHDHYTYDANGNPTLVTNDSTNATREMYWD EDNRLMVLSDNGKTSRYTYNAAGERIMKSYGTMEGVYINGAPQGITFHETDNFTLYPASI LSVNKNRFTKHYFIGDKRIASRIGTGLFNNVYGRNGSYVTAGQQDYAERMNQIQRQKEAY YKQQGIAPGVPTEKGAYGDPENTGVGYNNVLTELGNHDVPQGWIQTPRPNTTPDTNPGVP VSWNDPSNPDDPQAGYGYIPNDTTKEETFFYHSDHLGSTSYITDEHANITQYDAYLPYGE LLVDEHSSSEDLPYKFNGKQFDEETGLYYYGARYLNPMASIWYGVDPLANGKPRVSGYIM CLDNPLKYIDPNGLWEWNAKGNLVAQKGDDAHTLARFFSTSDKNAMEILRRCGIKPNKDG VLDLKIGQILDKKNLWVGTKSASGPVVHNTKEAIYHYYTW >gi|281306170|gb|ADEF01000011.1| GENE 18 18270 - 18557 185 95 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDLTAETFHIGHTNVNYVVRSNGNTSSVTYTLFSNDGFWDPDFLMENGKLTGIHGQGNMG KELLIPDGVGPNLEFGGTPYYYKTRTRTYFFKPIK >gi|281306170|gb|ADEF01000011.1| GENE 19 18557 - 19000 245 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|302483273|gb|EFL46283.1| ## NR: gi|302483273|gb|EFL46283.1| hypothetical protein HMPREF9296_0764 [Prevotella disiens FB035-09AN] # 33 129 97 190 204 65 40.0 8e-10 MKMKNISFIIIGVLIILVSIVYNMKEIIPLYSKNLPFGIVANYTNEYPIHFEIDDAEGDP IIEQGFIFFRSSGFEVNEIIKYGYNHNSIMVICTDKYNRKHYLVSFKTGHKTKSGYSEVS FKEINERNYISEKKNYKWIFVRKLRSH >gi|281306170|gb|ADEF01000011.1| GENE 20 19061 - 21094 1506 677 aa, chain + ## HITS:1 COG:MA2043 KEGG:ns NR:ns ## COG: MA2043 COG3209 # Protein_GI_number: 20090890 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Methanosarcina acetivorans str.C2A # 351 482 122 250 440 72 38.0 3e-12 MNLTADGQAVMENRYRYDAVDNILGITNAANPTSLTKLNRAKLGGRSSHTYEYDELNRLI HASGKAKRASYDMVMSFGRMSEPLTKVQKVDSTTTAKSYNFAYKYEESNHPTAPTQIGHD HYTYDANGISTLVTNDSTNITREMYWDENNRLMVLSDNGKISRYTYNAAGERIMKSYGTM EGVYINGAPQGITFHETDNFTLYPASILSVNKNRFTKHYFLGDKRVASRIGTGLFNNVYG RNGSYVTAGQQDYAERMNQIQKQKEAYYKQQGIAPGVPTEKGAYGDPENTGVGYNAVLTE LGNHDVPQGWVQTPKPNTTPNTNPGPPVSWNDPSNPDDPQAGYGYIPNDTTKEETFFYHS DHLGSTSYITDKDANITQFDAYLPYGELLVDEHSSSEELPYKFNGKEFDEETGLYYYGAR YMNPNTSLWYGVDALTEKNPNVTGYCYTFNNPIKLLDPDGNSPIGAAVEGISAFVVSAGV DFISNWIFEGMDYKTAFRHVRWGTAAFDGISTAAISLLVDGAGTTKTIGKIANSKAGRFA IDVAQTMITNIIGDIEKGVDFKEIDLTEEFISATFSTLLDKGMEKRANELLSGLERSNKK LYTALNKLKRNQKAGKSEARLKSDMSRVKIAKDRHRGNVRRYANAVTKKNFVVAGADLAV EKAFEVPDKKTSNKKNK >gi|281306170|gb|ADEF01000011.1| GENE 21 21096 - 21584 235 162 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879943|ref|ZP_06288667.1| ## NR: gi|282879943|ref|ZP_06288667.1| hypothetical protein HMPREF9019_1565 [Prevotella timonensis CRIS 5C-B1] # 1 162 1 162 162 246 100.0 2e-64 MKESTLRKIIFFLIIFICAYYYYCTLVIHLWYYLVILCVALLIDLVLYFTLNLKFNLTSI VKTIVHLYFFLFSILFIIVKFDGKTETYRLPLNGYTYNRVDKILFTFKGHNFGRFHSLPQ YSLIADKDMTKLYDVLLELKEPIRGIYIIEYISLEKKVQANK >gi|281306170|gb|ADEF01000011.1| GENE 22 21588 - 21875 171 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879944|ref|ZP_06288668.1| ## NR: gi|282879944|ref|ZP_06288668.1| hypothetical protein HMPREF9019_1566 [Prevotella timonensis CRIS 5C-B1] # 1 95 1 95 95 155 100.0 1e-36 MKTGELFLMILVPDNSKKEKQHIPIGSTVPVTEKIHPNRDVVKNIAIGATVVAILKSIGT IAEKIVSRTVTPIIVPPTTSMSIEMQYQQYNDNLR >gi|281306170|gb|ADEF01000011.1| GENE 23 21872 - 22474 479 200 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNLKEKLNLLEGELTRIESPILRLLRDSNDGFDRDQTAHVLTNLGMYPLQMLLDFYDWTT GADENILFNINNQVKLSTIGNPAKVSITTSLYMLDATTDDFFAHRKMLPFIYNGIMEDPI LIDLSPKSKTIGALYYYSPQVTLSVVPIMIYDSLELWIDTMLLCYSNGIYKIKPNGMLVA DVDKEIKITRELNPHSIYWD >gi|281306170|gb|ADEF01000011.1| GENE 24 22488 - 24206 1552 572 aa, chain + ## HITS:1 COG:MA2045 KEGG:ns NR:ns ## COG: MA2045 COG3209 # Protein_GI_number: 20090892 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Rhs family protein # Organism: Methanosarcina acetivorans str.C2A # 143 520 1439 1768 2217 98 26.0 4e-20 MVFSIKTLSVVHLPSLWLRMNYAPSVTTDLNGQKMEYTYDALGRQMTIRAPYEIESGQPF TIRFEYFPAERKAHTIHYSKEGNIDTYTFADSLMRAVQTKQTGVVWSGGSNQKVSIVSGR AVTDAFGRNITAYYPMTETLGNIGTYNHATGNLQAKTEYDAHDRTTSVTLADGSVTRTAY SIGSHDGEPMLQTTVTDALGRHAECYTDAKGRNRETVQHARGEDITVKYNYDPVGQVLTV QHPNGRETKYAYDLLGRKLMVNHPDAGETDMTYDAAGNLLTKLTAELRKSISDKGYISYT YDFERLHEVLYPENLFNRVTYTYGKAGDKYNRAGRLALVEDASGGEAYYYGRQGEVTKTI RTVMASVADIRTYVYGTTYDSWNRVQTMTYPDGEVVTYHYNAAGQVERMTSNKQGRQSVI VDRIGYDKEGHTVYTKLGNGTEATYTYDKQRERLQVMNLTADGQTVMENRYRYDAVDNIL SITNAANPTSLTKLNKAKLGGRSSHTYEYDELNRLVSFGMYTEFLVFGHKKRPKLLKFGR FVYIFVYVLRKTLIFKVYCGERLFLLNLQIVS >gi|281306170|gb|ADEF01000011.1| GENE 25 24333 - 25622 987 429 aa, chain + ## HITS:1 COG:no KEGG:PG0838 NR:ns ## KEGG: PG0838 # Name: not_defined # Def: integrase # Organism: P.gingivalis # Pathway: not_defined # 1 429 1 432 432 719 81.0 0 MNIKRNIIFTLESRKKDGVLIVENVPIRMRVNFASKRIEFTTGYRIDAAKWDSDKQRVRN GCTNKLKQSASEINASLLGYYTEVQEIFKKFEVEEIMPTPEQIKEAFNALHKPIEEEVKP RKPMPNTFYKVFDEFVRDCGRQNDWTDSTYEKFAAVKNHLMNFRDGLTFDFFDEKGLNDY VTYLRDVKEMRNSTIGKQLSFLKWFLRWAFKKGVHQNNAYDSYKPKLKSTQKKIIFLTWE ELNKLREFKIPAAKQALDRVRDVFLFQCFTGLRYSDVFNLRRSDIKGDHIEVTTVKTSDS LIIELNNHSKAILDKYRDVAFEDDKVLPVITNQKMNDYLKELAEMAGIDEPVRQTYYRGN ERIDEVTPKYALLGTHAGRRTFICNALALGIPPQVVMKWTGHSDYKAMKPYIDIADDIKA NAMSKFNQL >gi|281306170|gb|ADEF01000011.1| GENE 26 25635 - 26915 304 426 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855185|ref|ZP_02477956.1| 50S ribosomal protein L31 [Haemophilus parasuis 29755] # 203 417 120 327 339 121 31 5e-27 MSQEINKAEKQDLSLVVQAIGSDLEHTQVRMIASANADMLFHYWKVGHFILYLQKREGWG SKVIDNLSKAIRSKYPDKKGYSTRNLIYMCQFAKAYPMDILLEMGKVEKQLNSPSVDNVL QLTNELNQFTQEPLAQIQATGNQGDIITQEALAQLGEISEVLSVIYQHDINLIEEIFKQS AVVRTNWASHVILLNSKLPLGERYWYITQAVANGWSSNVLQMQIVTNLFARQITAKKVSN FSVRLPKPQSDLANYLMKDPYIFDMMGQTDKMAERDIERQLVSHITKYLLEMGSGFAFVA QQKHFEVGDSDFYADLILYNIQLHAYVVIELKATPFKPEYMGQLNFYINVVDDTLRGEHD NKTIGLLLCNGGDKVVAQYALSGYDQPIGVSDYQLTKAIPENLKSALPTVEEVEKELSKI VEQETN >gi|281306170|gb|ADEF01000011.1| GENE 27 26928 - 28049 803 373 aa, chain + ## HITS:1 COG:no KEGG:BVU_1447 NR:ns ## KEGG: BVU_1447 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 5 235 1 237 432 127 39.0 7e-28 MSNNIKELLSLLLPLHHAEQERLKKEKEEGKCFNVFSTLNMCSDEVRLHSRLLATLLNPK ANHGLGNKFLKSFLIALELPEDYITHCKEQIVERPVGEVTETTGGRIDIILEDRGHAVII ENKIYAGDQPNQLLRYHNYGVKTFGENNFKLVYLTLYGNKPSSDSLGGEDFEFVKLSYAQ DVLKLLKKLMKSKPQKPVHRTIKDYITIIKQLTDQDMDTEYQQSIINEAIDKKYIDATLE LLQLTKQIGDALIEKYIINPLKDIEFERHPDDNGALWRDLNESYAIVIKTADRTYWRKVW IGISPKNGYEQPSKKLDCFTDEPTKNYPYGWSWISDNANNNWHNPAQYPAIKEEEVLRWI EKKISEIKTYFKN >gi|281306170|gb|ADEF01000011.1| GENE 28 28067 - 28795 381 242 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879949|ref|ZP_06288673.1| ## NR: gi|282879949|ref|ZP_06288673.1| hypothetical protein HMPREF9019_1571 [Prevotella timonensis CRIS 5C-B1] # 1 242 1 242 242 493 100.0 1e-138 MEDLKQLLDFGESCQQFVAYHCFGDKAKEILSCLQLPYKDICNCNDDLHSKQCLAIFVFT DNAEVYVSEIDSFIKQYKGIVGSIFILDLHSNMQYDLFKERWEFYNILTSQDSTVEDDIL HYLLFFHHFIETVGLIGMDFNDFRMCARTATYITSGTALSLDQPIYPISYSNNNIRTVML GLELQSLEADRAKEDMDVLVSFLEQLPDNVEIIWQISPKYGHPHTEYIVGFDKAPVWHTD NP >gi|281306170|gb|ADEF01000011.1| GENE 29 28805 - 29371 163 188 aa, chain + ## HITS:1 COG:no KEGG:ZPR_0569 NR:ns ## KEGG: ZPR_0569 # Name: not_defined # Def: metallophosphoesterase domain-containing protein # Organism: Z.profunda # Pathway: not_defined # 1 182 1 201 207 152 39.0 5e-36 MTILQISDTHNRHQLLTNLPTADVLVHCGDFTDMGTEEEALNFLNWLIEQPYRHKIFVTG NHDLCLWEAENIEDLPNNIHFLQDRGCEIEGVRFFGLAYNHQESIIPHGVDVLITHEPPV MILDKSNGIHWGNLSLRNKVLEVKPKFHLFGHAHDAYGTEQQGTTTFSNGAVLNDHYQLC NAPLLHKV >gi|281306170|gb|ADEF01000011.1| GENE 30 29598 - 29798 219 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|288926508|ref|ZP_06420427.1| ## NR: gi|288926508|ref|ZP_06420427.1| conserved hypothetical protein [Prevotella buccae D17] # 1 64 1 64 219 98 92.0 1e-19 MNNEIAPVLDMLEELKQECKVISKAQEELRITLAEQLSCPRADSIKTQETVQIHLSKETQ AKIKGL >gi|281306170|gb|ADEF01000011.1| GENE 31 29820 - 30746 688 308 aa, chain - ## HITS:1 COG:no KEGG:PG0868 NR:ns ## KEGG: PG0868 # Name: not_defined # Def: mobilization protein # Organism: P.gingivalis # Pathway: not_defined # 1 305 1 301 307 333 57.0 6e-90 MIAKIIKGADLGGVINYMLSKQEGKAMVLASNNIGFTDQNLCVHEFVLQASMRPNVQKPV CHTILSFSVGDAERLTDEMMVKIANEYLEKMGYGDTQSLIVRHSDRQHPHLHICINRIGN DGKTISDCNEKYRSTKICRELTEHYDLTLGEGKKAVNRHRLRGEDKLRYEIFDAIKTALL HSKNWKDFVANLERQGITTRFKTKGNTDVVQGIIFEKDGCSFSGSKIDRTCSFSRLNAEI EQNSHKQEKIHLQNEPMAHPVDESIFITELFEAISEVFSMPTPSNGVDVDELRFQKKLRN RANRKRRI >gi|281306170|gb|ADEF01000011.1| GENE 32 30743 - 31090 310 115 aa, chain - ## HITS:1 COG:no KEGG:PG0869 NR:ns ## KEGG: PG0869 # Name: not_defined # Def: mobilization protein # Organism: P.gingivalis # Pathway: not_defined # 1 114 3 116 117 114 59.0 1e-24 MEQKNKGGRPTKTLSEKRKYQVLLRLNTMEYYTLLGKAREATITRTEFLRQLITNAEVKS RIKPEEMRLIRTVSGMANNLNQIAHRLNAFGISAFNEELNALKQLIHELMKRLKP >gi|281306170|gb|ADEF01000011.1| GENE 33 31193 - 31426 78 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|281426344|ref|ZP_06257257.1| ## NR: gi|281426344|ref|ZP_06257257.1| putative mobilizable transposon, excision protein [Prevotella oris F0302] # 1 77 220 296 296 145 90.0 1e-33 MPRIQEKLKSYKQVESFLDNDEAGRNSFDVLKQFYPSIIDGSARYQTHKDLNEWLVAQSK VKEKQMLLPTIKCGIRR >gi|281306170|gb|ADEF01000011.1| GENE 34 31637 - 32716 549 359 aa, chain + ## HITS:1 COG:AGpT275 KEGG:ns NR:ns ## COG: AGpT275 COG3547 # Protein_GI_number: 16119969 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 64 303 27 261 274 108 28.0 2e-23 MQRNKISFKGQKIYIGIDVHAKTWEVCVLTESGYKLRHPQQASAKTLFDFLKKHFLDGEY HAVYESGFSGFSTYYALKEYGINCVVTHAADVPTTQYEEVMKTDKVDAAKLARSLRAGDI RPIYIREKENINDRSVIRIRKTIQKQLSGYKARVKHLLHCNGVEIPERFARPGTHWSRAF IKWLKEDVVLLSSSRLSLDLLVKQVETIRQTLLDATKSIRRLAQTDRYRNNYELLMSIPG IGVSVAMCILTEIYDVKRFRNENQFASYLGLIPTCHNSGEKTASGEKTFRGNKHLGPMII EAAWIAIYRDYGLGMTYARYKQSMKPQEAIVKIARKMSNIIFSVLKNSRKYEPYRWDKE >gi|281306170|gb|ADEF01000011.1| GENE 35 32992 - 33678 253 228 aa, chain - ## HITS:1 COG:no KEGG:PG0841 NR:ns ## KEGG: PG0841 # Name: not_defined # Def: mobilizable transposon, excision protein, putative # Organism: P.gingivalis # Pathway: not_defined # 1 214 1 218 297 254 54.0 1e-66 MEIQNIKQISITDYLQQQGYSPARVQGIHFWYCSPLRNESTPSFKVNTERNQWYDFGTGE YGDIIDLVRTLQHCTMYEAIDFLIGLKQIVHQDFSFGGERKTSKHKLEIISVQSLTDPYL LRYIAERGIPLSIANRCCSEIRYNNTNRTYYAIGFANDAGGWEIRSPYFKGCIAPKAITT ISTGADVLQIFEGFMDFLSWQTLNPSSTCDTIVLLCCFPNNWKIFVIY >gi|281306170|gb|ADEF01000011.1| GENE 36 33861 - 34910 642 349 aa, chain - ## HITS:1 COG:no KEGG:PG0842 NR:ns ## KEGG: PG0842 # Name: not_defined # Def: mobilizable transposon protein # Organism: P.gingivalis # Pathway: not_defined # 5 344 13 349 354 472 68.0 1e-132 MNTTDYENIWQKPLIHVTDEFSLPPVVLQAGEAIIGTLDNFSVSTGKAKAKKTFNVSAIV AAALINGQVLEYRASFPESKRKILYFDTEQSPYHCQLVMQRILRLAGLPIDREPEHLRFS HLRAIADPNERREIIRYAIYHTPNVGLVVIDGIRDLMLDINNSTEATKLVGDLMQWTSEQ NIHIQTVFHLNKGDDNARGHIGTELNNKAETVLQITKDNTITERSIVVPSIIRSKPFEKF AFRLKEVENDICIPQIDLSYSDNERKSHRFSYQELSTNEHRKALEQVFSTSEILPYSTLI VALKEAYAKIVGLSYGQTKLKELLQFLLNKGIVVKEERGKYRLSHNSLQ >gi|281306170|gb|ADEF01000011.1| GENE 37 34910 - 35218 222 102 aa, chain - ## HITS:1 COG:no KEGG:PG0843 NR:ns ## KEGG: PG0843 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 102 1 102 103 139 68.0 4e-32 MTINELRDKPVWQMTGEELLFLARHSNMSTSRESTKASSSKEEKRYVYGLAGITRLFGYS LPTANRIKQSGKINRAITQIGRKIIVDADLALELAGRKTGGR >gi|281306170|gb|ADEF01000011.1| GENE 38 35282 - 35449 75 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQKEEAFDIIPRGKDVAGSIGKNKEINNYQKRSIHTQKVDYFELTHIVSQSSLIV >gi|281306170|gb|ADEF01000011.1| GENE 39 35528 - 35857 202 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302482260|gb|EFL45291.1| ## NR: gi|302482260|gb|EFL45291.1| transposase, IS116/IS110/IS902 family [Prevotella disiens FB035-09AN] # 1 105 1 105 359 217 98.0 2e-55 MQRNKISFKGQKIYIGIDVHAKTWEVCVLTESGYKERHPQQASAKTLFDFLKKHFPDGEY YAVYESGFSGFSTYYALKEYGINCVVTHAADVPTTQYEEVMKTDKGMNL Prediction of potential genes in microbial genomes Time: Sat May 28 06:22:18 2011 Seq name: gi|281306169|gb|ADEF01000012.1| Prevotella timonensis CRIS 5C-B1 contig00064, whole genome shotgun sequence Length of sequence - 1727 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 72 - 1548 99.0 # AY958868 [D:1..1483] # 16S ribosomal RNA # uncultured bacterium # Bacteria; environmental samples. Prediction of potential genes in microbial genomes Time: Sat May 28 06:22:44 2011 Seq name: gi|281306074|gb|ADEF01000013.1| Prevotella timonensis CRIS 5C-B1 contig00028, whole genome shotgun sequence Length of sequence - 95440 bp Number of predicted genes - 126, with homology - 106 Number of transcription units - 45, operones - 26 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 425 - 484 4.3 1 1 Tu 1 . + CDS 504 - 635 90 ## + Term 638 - 674 0.3 - Term 455 - 513 10.2 2 2 Tu 1 . - CDS 668 - 1753 1167 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 1803 - 1862 3.9 + Prom 1776 - 1835 6.0 3 3 Op 1 3/0.000 + CDS 1948 - 2637 594 ## COG1738 Uncharacterized conserved protein 4 3 Op 2 . + CDS 2664 - 3134 529 ## COG0780 Enzyme related to GTP cyclohydrolase I 5 3 Op 3 . + CDS 3148 - 5370 1549 ## COG1752 Predicted esterase of the alpha-beta hydrolase superfamily + Term 5498 - 5533 3.1 6 4 Tu 1 . - CDS 5453 - 6490 734 ## COG2502 Asparagine synthetase A - Prom 6522 - 6581 3.2 + TRNA 6821 - 6894 52.1 # Arg CCG 0 0 7 5 Op 1 . - CDS 7205 - 7672 429 ## gi|282879966|ref|ZP_06288688.1| conserved hypothetical protein 8 5 Op 2 . - CDS 7684 - 7989 388 ## BT_4733 hypothetical protein 9 5 Op 3 . - CDS 7964 - 8299 276 ## BT_4732 hypothetical protein 10 6 Tu 1 . - CDS 8407 - 9819 923 ## COG1672 Predicted ATPase (AAA+ superfamily) + Prom 9816 - 9875 6.1 11 7 Tu 1 . + CDS 9939 - 10070 94 ## + Term 10182 - 10237 13.5 - Term 10170 - 10225 9.1 12 8 Tu 1 . - CDS 10264 - 12498 1533 ## gi|282879970|ref|ZP_06288692.1| hypothetical protein HMPREF9019_0898 13 9 Tu 1 . - CDS 12613 - 12816 299 ## 14 10 Tu 1 . - CDS 12989 - 13240 175 ## - Prom 13263 - 13322 7.6 + Prom 13085 - 13144 7.7 15 11 Tu 1 . + CDS 13253 - 13405 58 ## + Prom 13432 - 13491 1.7 16 12 Tu 1 . + CDS 13513 - 13668 123 ## + Prom 13702 - 13761 6.8 17 13 Op 1 . + CDS 13894 - 14094 155 ## gi|153808059|ref|ZP_01960727.1| hypothetical protein BACCAC_02345 18 13 Op 2 . + CDS 14147 - 14443 242 ## gi|261881072|ref|ZP_06007499.1| conserved hypothetical protein 19 13 Op 3 . + CDS 14448 - 14771 170 ## gi|299142813|ref|ZP_07035941.1| hypothetical protein HMPREF0665_02422 20 13 Op 4 . + CDS 14796 - 15077 251 ## gi|282879425|ref|ZP_06288166.1| hypothetical protein HMPREF0650_0109 21 13 Op 5 . + CDS 15074 - 15259 229 ## gi|282879972|ref|ZP_06288694.1| conserved domain protein 22 13 Op 6 . + CDS 15266 - 15352 57 ## 23 13 Op 7 . + CDS 15349 - 15591 345 ## gi|282880008|ref|ZP_06288730.1| conserved domain protein 24 13 Op 8 . + CDS 15588 - 15911 142 ## gi|282880009|ref|ZP_06288731.1| conserved domain protein 25 13 Op 9 . + CDS 15938 - 16150 166 ## gi|282879973|ref|ZP_06288695.1| conserved domain protein 26 13 Op 10 . + CDS 16189 - 16509 325 ## HS_1421 hypothetical protein 27 13 Op 11 . + CDS 16522 - 16962 471 ## gi|282879975|ref|ZP_06288697.1| conserved hypothetical protein TIGR01671 28 13 Op 12 . + CDS 16965 - 17174 112 ## + Prom 17202 - 17261 4.8 29 14 Op 1 . + CDS 17328 - 17657 168 ## gi|260174794|ref|ZP_05761206.1| hypothetical protein BacD2_23259 30 14 Op 2 . + CDS 17659 - 17967 287 ## gi|261881078|ref|ZP_06007505.1| ribonuclease 3 31 14 Op 3 . + CDS 17964 - 18251 168 ## + Term 18343 - 18387 1.7 32 15 Tu 1 . - CDS 18169 - 18372 306 ## gi|282879976|ref|ZP_06288698.1| conserved domain protein - Prom 18414 - 18473 6.0 + Prom 18449 - 18508 6.0 33 16 Tu 1 . + CDS 18537 - 18722 270 ## gi|282879977|ref|ZP_06288699.1| conserved domain protein 34 17 Op 1 . - CDS 18762 - 19052 89 ## BVU_3208 hypothetical protein 35 17 Op 2 . - CDS 19121 - 19882 467 ## BDI_0844 hypothetical protein - Prom 19980 - 20039 11.7 + Prom 19878 - 19937 5.1 36 18 Op 1 . + CDS 20017 - 20244 69 ## gi|153808057|ref|ZP_01960725.1| hypothetical protein BACCAC_02343 37 18 Op 2 . + CDS 20232 - 20795 159 ## BT_0850 putative transcriptional regulator 38 18 Op 3 . + CDS 20801 - 21730 812 ## Coch_0875 hypothetical protein 39 18 Op 4 . + CDS 21723 - 22538 496 ## BDI_0853 hypothetical protein 40 18 Op 5 . + CDS 22544 - 23011 348 ## gi|282879982|ref|ZP_06288704.1| conserved hypothetical protein 41 18 Op 6 . + CDS 23015 - 23254 209 ## gi|282879983|ref|ZP_06288705.1| conserved hypothetical protein 42 18 Op 7 . + CDS 23241 - 23681 310 ## BDI_0854 hypothetical protein 43 18 Op 8 . + CDS 23696 - 24346 764 ## BVU_2857 hypothetical protein 44 18 Op 9 . + CDS 24404 - 25579 558 ## COG1061 DNA or RNA helicases of superfamily II 45 18 Op 10 . + CDS 25581 - 25958 272 ## gi|282879987|ref|ZP_06288709.1| hypothetical protein HMPREF9019_0915 46 19 Tu 1 . - CDS 25882 - 26058 58 ## - Prom 26132 - 26191 4.4 + Prom 26021 - 26080 2.4 47 20 Op 1 . + CDS 26116 - 26523 188 ## gi|282879988|ref|ZP_06288710.1| hypothetical protein HMPREF9019_0916 48 20 Op 2 . + CDS 26507 - 26929 403 ## COG0756 dUTPase 49 20 Op 3 . + CDS 26910 - 27278 171 ## Aave_1600 hypothetical protein 50 20 Op 4 . + CDS 27275 - 27763 257 ## BDI_0857 putative recombination protein + Term 27903 - 27937 1.0 + Prom 27830 - 27889 5.8 51 21 Op 1 . + CDS 27975 - 28160 198 ## 52 21 Op 2 . + CDS 28240 - 29169 572 ## gi|282879992|ref|ZP_06288714.1| hypothetical protein HMPREF9019_0920 53 21 Op 3 . + CDS 29160 - 29726 286 ## gi|282879993|ref|ZP_06288715.1| hypothetical protein HMPREF9019_0921 54 21 Op 4 . + CDS 29723 - 30139 206 ## gi|282879994|ref|ZP_06288716.1| hypothetical protein HMPREF9019_0922 + Prom 30165 - 30224 3.7 55 22 Tu 1 . + CDS 30248 - 31615 969 ## COG0305 Replicative DNA helicase + Prom 31699 - 31758 6.0 56 23 Op 1 . + CDS 31817 - 32401 486 ## gi|282879996|ref|ZP_06288718.1| hypothetical protein HMPREF9019_0924 57 23 Op 2 . + CDS 32404 - 32817 310 ## gi|282879997|ref|ZP_06288719.1| hypothetical protein HMPREF9019_0925 58 23 Op 3 . + CDS 32820 - 33353 349 ## gi|282879998|ref|ZP_06288720.1| hypothetical protein HMPREF9019_0926 59 23 Op 4 . + CDS 33358 - 33630 248 ## gi|282879999|ref|ZP_06288721.1| hypothetical protein HMPREF9019_0927 60 23 Op 5 . + CDS 33634 - 33987 218 ## gi|282880000|ref|ZP_06288722.1| conserved domain protein + Prom 33995 - 34054 6.2 61 24 Op 1 . + CDS 34085 - 34261 215 ## gi|282880001|ref|ZP_06288723.1| conserved domain protein 62 24 Op 2 . + CDS 34274 - 34537 302 ## BF1346 hypothetical protein 63 24 Op 3 . + CDS 34552 - 34743 128 ## 64 24 Op 4 . + CDS 34763 - 35056 274 ## 65 24 Op 5 . + CDS 35068 - 35922 623 ## gi|282880003|ref|ZP_06288725.1| hypothetical protein HMPREF9019_0931 66 24 Op 6 . + CDS 35927 - 36091 272 ## gi|282880004|ref|ZP_06288726.1| conserved domain protein 67 24 Op 7 . + CDS 36088 - 36501 359 ## PGN_0048 hypothetical protein + Prom 36537 - 36596 3.1 68 25 Op 1 . + CDS 36630 - 37664 466 ## BF0107 hypothetical protein 69 25 Op 2 . + CDS 37661 - 38074 266 ## gi|282880007|ref|ZP_06288729.1| hypothetical protein HMPREF9019_0935 70 25 Op 3 . + CDS 38071 - 38316 283 ## gi|282880008|ref|ZP_06288730.1| conserved domain protein 71 25 Op 4 . + CDS 38313 - 38636 140 ## gi|282880009|ref|ZP_06288731.1| conserved domain protein + Prom 38799 - 38858 9.7 72 26 Op 1 . + CDS 38906 - 39313 288 ## Ava_B0332 hypothetical protein 73 26 Op 2 . + CDS 39267 - 39377 59 ## + TRNA 39369 - 39441 71.8 # Gly TCC 0 0 + TRNA 39450 - 39522 57.0 # Gly TCC 0 0 + Prom 39452 - 39511 80.4 74 27 Op 1 . + CDS 39545 - 41626 1128 ## gi|282880011|ref|ZP_06288733.1| hypothetical protein HMPREF9019_0942 75 27 Op 2 . + CDS 41610 - 42320 455 ## EUBREC_2116 hypothetical protein 76 27 Op 3 . + CDS 42304 - 43161 542 ## Csal_2188 D-alanine--D-alanine ligase (EC:6.3.2.4) 77 27 Op 4 . + CDS 43173 - 43517 230 ## gi|282880014|ref|ZP_06288736.1| conserved domain protein + Term 43700 - 43758 0.7 + Prom 43568 - 43627 7.4 78 28 Tu 1 . + CDS 43771 - 45021 656 ## COG1783 Phage terminase large subunit + Term 45068 - 45107 6.1 + Prom 45060 - 45119 5.0 79 29 Op 1 . + CDS 45231 - 45413 167 ## 80 29 Op 2 . + CDS 45426 - 45671 183 ## gi|282880016|ref|ZP_06288738.1| conserved hypothetical protein 81 29 Op 3 . + CDS 45662 - 45787 68 ## 82 29 Op 4 . + CDS 45802 - 46092 342 ## 83 29 Op 5 . + CDS 46061 - 46348 225 ## gi|282880017|ref|ZP_06288739.1| conserved domain protein 84 29 Op 6 . + CDS 46335 - 46571 145 ## gi|153806890|ref|ZP_01959558.1| hypothetical protein BACCAC_01166 + Term 46633 - 46683 10.1 + Prom 46600 - 46659 2.5 85 30 Op 1 . + CDS 46702 - 48147 972 ## BDI_0880 hypothetical protein 86 30 Op 2 . + CDS 48144 - 48332 237 ## gi|282880019|ref|ZP_06288741.1| conserved domain protein 87 30 Op 3 . + CDS 48329 - 48661 286 ## gi|282880020|ref|ZP_06288742.1| hypothetical protein HMPREF9019_0951 88 31 Op 1 . + CDS 48835 - 50412 728 ## GFO_2441 hypothetical protein 89 31 Op 2 . + CDS 50469 - 50696 273 ## gi|282880022|ref|ZP_06288744.1| hypothetical protein HMPREF9019_0953 90 31 Op 3 . + CDS 50683 - 51111 291 ## CKR_1637 hypothetical protein + Term 51112 - 51149 -0.7 91 32 Op 1 . - CDS 51139 - 51657 346 ## 92 32 Op 2 . - CDS 51597 - 52688 604 ## COG4748 Uncharacterized conserved protein - Prom 52915 - 52974 7.5 + Prom 52747 - 52806 5.5 93 33 Op 1 . + CDS 52934 - 53311 215 ## 94 33 Op 2 . + CDS 53320 - 54756 869 ## GFO_2470 DNA-methyltransferase + Term 54781 - 54821 4.1 + Prom 54787 - 54846 7.3 95 34 Op 1 . + CDS 55021 - 55773 815 ## gi|282880026|ref|ZP_06288748.1| hypothetical protein HMPREF9019_0957 96 34 Op 2 . + CDS 55808 - 56218 487 ## gi|282880027|ref|ZP_06288749.1| conserved hypothetical protein 97 34 Op 3 . + CDS 56234 - 57550 931 ## GFO_2436 hypothetical protein 98 34 Op 4 . + CDS 57553 - 57879 163 ## gi|282880029|ref|ZP_06288751.1| hypothetical protein HMPREF9019_0960 99 34 Op 5 . + CDS 57881 - 58219 295 ## gi|282880030|ref|ZP_06288752.1| conserved domain protein 100 34 Op 6 . + CDS 58260 - 58703 341 ## gi|282880031|ref|ZP_06288753.1| hypothetical protein HMPREF9019_0962 101 34 Op 7 . + CDS 58700 - 59116 192 ## gi|153806864|ref|ZP_01959532.1| hypothetical protein BACCAC_01139 102 34 Op 8 . + CDS 59122 - 59637 613 ## BT_4434 hypothetical protein + Prom 59756 - 59815 3.0 103 35 Op 1 . + CDS 59835 - 60218 362 ## gi|154492400|ref|ZP_02032026.1| hypothetical protein PARMER_02034 104 35 Op 2 . + CDS 60228 - 60941 364 ## BT_4435 hypothetical protein 105 35 Op 3 . + CDS 60984 - 65840 3027 ## BDI_0893 putative viral A-type inclusion protein 106 35 Op 4 . + CDS 65842 - 66258 316 ## gi|282880035|ref|ZP_06288757.1| hypothetical protein HMPREF9019_0966 107 35 Op 5 . + CDS 66296 - 69403 2036 ## gi|282880036|ref|ZP_06288758.1| hypothetical protein HMPREF9019_0967 108 36 Tu 1 . + CDS 69477 - 70502 952 ## L21300 prophage pi3 protein 11 + Term 70557 - 70605 -0.4 + Prom 70505 - 70564 8.9 109 37 Tu 1 . + CDS 70734 - 73001 1348 ## gi|282880038|ref|ZP_06288760.1| hypothetical protein HMPREF9019_0969 + Prom 73102 - 73161 4.1 110 38 Op 1 . + CDS 73196 - 73462 318 ## gi|282880039|ref|ZP_06288761.1| hypothetical protein HMPREF9019_0970 111 38 Op 2 . + CDS 73443 - 73883 438 ## COG3772 Phage-related lysozyme (muraminidase) 112 38 Op 3 . + CDS 73805 - 74329 238 ## gi|282880041|ref|ZP_06288763.1| conserved hypothetical protein + Term 74373 - 74435 11.5 + Prom 74383 - 74442 5.9 113 39 Op 1 . + CDS 74475 - 75017 630 ## gi|282880042|ref|ZP_06288764.1| hypothetical protein HMPREF9019_0973 114 39 Op 2 . + CDS 75071 - 75331 256 ## gi|282880043|ref|ZP_06288765.1| hypothetical protein HMPREF9019_0974 + Term 75363 - 75424 17.1 - Term 75360 - 75402 5.6 115 40 Op 1 . - CDS 75411 - 76592 540 ## BVU_2806 hypothetical protein 116 40 Op 2 . - CDS 76574 - 76765 85 ## - Prom 76803 - 76862 4.6 - TRNA 76738 - 76813 80.4 # Lys TTT 0 0 + Prom 77004 - 77063 6.7 117 41 Op 1 4/0.000 + CDS 77131 - 79197 1869 ## COG1629 Outer membrane receptor proteins, mostly Fe transport + Prom 79201 - 79260 3.0 118 41 Op 2 . + CDS 79284 - 80519 604 ## COG0477 Permeases of the major facilitator superfamily 119 41 Op 3 . + CDS 80516 - 81310 558 ## COG1587 Uroporphyrinogen-III synthase 120 42 Tu 1 . - CDS 81364 - 81627 248 ## COG1808 Predicted membrane protein 121 43 Op 1 2/0.000 - CDS 83547 - 84980 1193 ## COG1232 Protoporphyrinogen oxidase - Prom 85023 - 85082 3.6 - Term 85138 - 85173 -0.7 122 43 Op 2 . - CDS 85281 - 86651 1074 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - Prom 86824 - 86883 5.7 123 44 Tu 1 . - CDS 87637 - 89928 2124 ## COG3537 Putative alpha-1,2-mannosidase 124 45 Op 1 5/0.000 + CDS 90264 - 93920 2371 ## COG3513 Uncharacterized protein conserved in bacteria 125 45 Op 2 4/0.000 + CDS 93927 - 94814 440 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 126 45 Op 3 . + CDS 94811 - 95149 274 ## COG3512 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|281306074|gb|ADEF01000013.1| GENE 1 504 - 635 90 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFTLFFFLAFYERKIVVDTLIAKCSEYIKRPSINFLTHFQRKI >gi|281306074|gb|ADEF01000013.1| GENE 2 668 - 1753 1167 361 aa, chain - ## HITS:1 COG:BS_resA KEGG:ns NR:ns ## COG: BS_resA COG0526 # Protein_GI_number: 16079372 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus subtilis # 214 342 30 155 181 62 27.0 1e-09 MKKLLLFTMLALGVTTTQAQNAEYVISGNAPEGTNWVYYFYNGKFRSVDSVAVKDNKFQL NGTQPLNTFITVAADQQHSVTVVNDHTPITVNLKNGNVTGSPQNVQFANFQKEQNKLDEK MMDIYKKYQAVAADKTIEGQTKKGVFEGMMEQTEQKQIKNILAFANSNKKGVTPAYFLGQ SYYSLTYEELVSALDNTCAYYNHPMMERAKQQLRSLEKRRPGLKFTDLAMHDTEGKPAKL SQWVGKGNYVLVDFWASWCGPCRMEMPNVVDAYKRYHQAKGFDVVGVSFDSKLEAWKKGI QDLQLPWHNISDLKGWKCAAADVYGVNSIPCNILVDPSGQIVAQDLRGAKLADKLKEIYG Y >gi|281306074|gb|ADEF01000013.1| GENE 3 1948 - 2637 594 229 aa, chain + ## HITS:1 COG:Cgl0234 KEGG:ns NR:ns ## COG: Cgl0234 COG1738 # Protein_GI_number: 19551484 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Corynebacterium glutamicum # 6 216 37 249 250 118 30.0 9e-27 MEKKNHYVSVLFMLFSILFCVCLITANVLETKQIAVGPISLTGGLIVFPISYIINDCVCE VWGYRKARLLIWLGFAMNFFFVMMAALCDLIPGASYWTLGQSFHDIFGLAPRIAFASFIA FLCGSFVNAYVMSKMKISSQGKNFSLRAILSTIFGEGVDSLIFFPLAFIGVIPTSALLPL MFWQVILKTAYEIVVLPITIRVVRKLKEHEGEDVYDEDVDYNVLQVFNI >gi|281306074|gb|ADEF01000013.1| GENE 4 2664 - 3134 529 156 aa, chain + ## HITS:1 COG:NMB0317 KEGG:ns NR:ns ## COG: NMB0317 COG0780 # Protein_GI_number: 15676234 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Neisseria meningitidis MC58 # 4 155 2 157 157 226 71.0 2e-59 MEDTRKNEGLKALGSKTKYKMDYAPEVLETFENKHPTNDYWVQFNCPEFTSLCPITGQPD FAEIKIAYIPQKLMVESKSLKLYLFSFRNHGDFHEDCVNIIMKDLIRLMQPKYIEVIGLF TPRGGISIYPYANYGQPGTRYETLAEQRFFNHSIQP >gi|281306074|gb|ADEF01000013.1| GENE 5 3148 - 5370 1549 740 aa, chain + ## HITS:1 COG:PA3339_1 KEGG:ns NR:ns ## COG: PA3339_1 COG1752 # Protein_GI_number: 15598535 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Pseudomonas aeruginosa # 25 301 22 300 308 189 39.0 1e-47 MKKIAIFTLVGLLLLAIPVQSQPHRKKIAIVLSGGGAKGFAHIGALKVIEKAGIPVDIVT GTSMGSIIGGLYSIGYDSQLMDSIVRQQDWTLMLSDNIDVRSESLKRRQKQNTYLITRDV DFGKKKSTFSGGLIEGKNLRKLFEKLAYRYRDSIDFNKLPIPFACVSTDIIGDAEYVYHS GSLIEAMRASMAIPGAFTPIRKGEMILVDGGMSNNFPVDVARKMGADVVIGLSVQEPDKT ADDLTRRGSVIGQIIDINCKKKYDENVKNTDIFIRSCTDGYGTTSFSKSAIDTLIRRGEE AAMKQWDQLVKLRDELGIKPGQRAKYLTEITVDTLPKKVKLANVVFEKVDAADQKFTLRK FHLLKRDSINTGMLQKIANSMRADFYYNDADCYLTPTDDGECLHIAAIGDKTKKARLGVR FDTEELVALQANLGLFVRNKFLPMAADFTLRLGKRSMARADFSLYFNHWGKVNASYVFRH QDINIYDKGERDANIIYNQHTVSLIPFDFNIRNFNFQLGTYFDFYRYNAVLQDAKRELWQ INKRNQYFITYQASVKYNSEDKWYFPTRGAKFEATYGYHTNNFVGYDEAPGFRSVNAMWR ISFALNNRLTIQPMLYGRGVFGKNPPYTLQTLIGGNHFNYYAENQHLPFAGISYLELVRN KFVAAQLRFQQRIIDHNFIIAKVGVYKDGDKMDDIFDHSLRVGVQAAYYYQSIAGPLGGS IGWTIKTKQPNFYINLGFVF >gi|281306074|gb|ADEF01000013.1| GENE 6 5453 - 6490 734 345 aa, chain - ## HITS:1 COG:FN0776 KEGG:ns NR:ns ## COG: FN0776 COG2502 # Protein_GI_number: 19704111 # Func_class: E Amino acid transport and metabolism # Function: Asparagine synthetase A # Organism: Fusobacterium nucleatum # 10 345 3 327 327 363 54.0 1e-100 MSKLIKPVHYQALLDMRQTEQGIKLIKDFFQQNLATELRLRRVTAPLFVLKGLGINDDLN GIERAVTFAIKDLENAQAEVVHSLAKWKRLTLAEYKIEPPYGIYTDMNAIRADEELDNLH SLYVDQWDWESSIRPTDRNIAFLTNVVQRIYASLLRTEYLTCETYPQLTPFLPHDIHFVH SEELLQMYPDLSPKEREDAICKKYGAVFIIGIGGKLSNGEKHDGRAPDYDDWSTVTENGL AGLNGDILIWYPVLERSIELSSMGIRVDKESLLRQLKLENQEDKQQLYFHQQLLNDKLPL SMGGGIGQSRLCMVLLQKAHIGEIQASIWPEDMRKECAAAGMKLI >gi|281306074|gb|ADEF01000013.1| GENE 7 7205 - 7672 429 155 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879966|ref|ZP_06288688.1| ## NR: gi|282879966|ref|ZP_06288688.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 155 1 155 155 306 100.0 2e-82 MKPTKENTLYLTIKQMYFDQIVEGKKTKEYREIKETTYKKYLEVDEDGWPLYDTSKADAE DPLLGDICMWNGGCYPYVANQKWEYLSLAVGYAKERDTAVVEVNDITFEPLLDKKGNPAR FSIGEDDVAKIDANGDLCFWQTVFHIGKIIEVHKK >gi|281306074|gb|ADEF01000013.1| GENE 8 7684 - 7989 388 101 aa, chain - ## HITS:1 COG:no KEGG:BT_4733 NR:ns ## KEGG: BT_4733 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 5 97 6 98 101 84 45.0 9e-16 MKTNNHKIEDYDLVLDAKYGKEGTPQRVQFENEAKAFYASQILLQARKEAKMTQTELAEK AGTTKSYISKIENGLIEPGVGLFFRLINSLGLRIDISKSIG >gi|281306074|gb|ADEF01000013.1| GENE 9 7964 - 8299 276 111 aa, chain - ## HITS:1 COG:no KEGG:BT_4732 NR:ns ## KEGG: BT_4732 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 2 107 3 108 110 94 56.0 1e-18 MRRIKTYGGYFQTFMQTLDEKVQRKIDYALQLLKTQERLSSKFVKAIQDGLFELRIEYES NIYRVFFIFDNGQIVVLFNGFHKKTQKTPRQEIEKALKIKEAYYEDKQPQD >gi|281306074|gb|ADEF01000013.1| GENE 10 8407 - 9819 923 470 aa, chain - ## HITS:1 COG:FN0123 KEGG:ns NR:ns ## COG: FN0123 COG1672 # Protein_GI_number: 19703471 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 1 446 1 438 454 192 31.0 1e-48 MEFIDRIEETATFKRTLGLNRPVLIVIYGRRRIGKSELIKHVLTNQDVYHLSEEAQTQQQ IDSFAKTVSFTFDGFDRVSYHDWETILTSINLYVGENTSVCLDEFSYLVKSDPSLPSIIQ RLVDNKKLKYNLILCGSSQLMMHSLVLNEKSPLYQRCAWQPKLKQLRLPYIKEALHCSSQ QAVEEYAVWGGVPRYWELRADFDSLEVAVRNLLVNNYGTLYDEPTRLLRDERRDTATSFS LLTTVGNGVNRISEIASRMQQPATNLSQPISILTDLGYVEKDIPFGDNPKSSKKGLYRLG DNFLSFYYRFINPNKYLIELDRQDLVMDIIRKDFSTYVGQVWEKICRNFVTGNEIDGVVY GNASRWWGGIPKEDGSNGYEQIELDLVAESLDKKHILVAECKWRERDEAQSIYEQLTSRA SRLPFVKKGQKVHTILFLKTETKADVPCYYPKDIIASMFQEDASKDNVTY >gi|281306074|gb|ADEF01000013.1| GENE 11 9939 - 10070 94 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFTEYNMGEVNTVNDTLHANNNPFEKAFRFAHTAFKLGLMNIW >gi|281306074|gb|ADEF01000013.1| GENE 12 10264 - 12498 1533 744 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879970|ref|ZP_06288692.1| ## NR: gi|282879970|ref|ZP_06288692.1| hypothetical protein HMPREF9019_0898 [Prevotella timonensis CRIS 5C-B1] # 1 744 12 755 755 1505 100.0 0 MKTTIHNLRRAGMLCVSLALMALTLGSCASDIENIQPSSPDKESGQTKYPTTTIRMYIGT PDMDGETQKIVNELASNAKTRGTLTRALTLDGNGKVEADQDFVATCYIINERTQQLGKFT YKWRTKRSDSNYLLLDDPNGEGKPQNITVQWIKGAATNNISGNDWKVCAVAGGTEKEVGG GANGTMRHAVNFQPQMVRDNSPETKQGGNVRMANNNEPIAFISNSKPVTMRNGAPFARFR FKMPGTLVKIKVKRDDNVSKSHDYFLKTNALHPMGVFCPITDKGELKAGDISTWWESTCP VIVRNFNNNDNYILHLNGKADEAIHLTEGGAEYDVWYMWGMPTDKTGVETMMGSWTGGYI LKQAKKANAQGPFISKHIFKNDGGKMRTLTANVNDSEPYPAFNFLNFLSRAAKHNVAAPK TWWDNDLVIPGDKWPDDSHDWRKKNGSVWYTWEEAMQHKRVMPEDNVWHTPSLTELTTLF PFPAEYGRWKDQSWDIYVCNGDQRTFTNKTELWKEWMTLYADMEDSQGYMYIRDLFPGNG GDLASEQMKNLNTQGFFSHYFTTADGKKTYGIRFFRSAKYGDRLCCAYKWETKNWPDCKW TNENQLIVTSRWIGNAPLKVSDIMSDAWWNGEDSKYNVQVNLPCQAENSGLSYTNDHSAM TLVAGNTYQASSNGGHFARAFSKYKGGTFQRKNNYRKGFIHPFTNRQMCLERGKWGDEYF EEGSGKGTGKQWGLPKTGWHANPR >gi|281306074|gb|ADEF01000013.1| GENE 13 12613 - 12816 299 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKETVKHKKPYTTPLCEVIKIGGDDNLLDKLGIQASIEEPTDGGEILDAKRFDFSEEDFD MKYSWGD >gi|281306074|gb|ADEF01000013.1| GENE 14 12989 - 13240 175 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYKYVTHSLGCLLNASFTFTKKHERTPYTVRLLTYFITPPELFNTFYWLSITEESPATSY CKAEEERTIAVSVSAVRCYTRSS >gi|281306074|gb|ADEF01000013.1| GENE 15 13253 - 13405 58 50 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIITLIFYSLDISFGAIYFYFINEFSKLSIFLKTPSYFKKKYNIYHGSII >gi|281306074|gb|ADEF01000013.1| GENE 16 13513 - 13668 123 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDTKKLIEDVLRIGTQVPVSESKKGTPERIPFLPFCDSHGARTHDPNIKSV >gi|281306074|gb|ADEF01000013.1| GENE 17 13894 - 14094 155 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|153808059|ref|ZP_01960727.1| ## NR: gi|153808059|ref|ZP_01960727.1| hypothetical protein BACCAC_02345 [Bacteroides caccae ATCC 43185] # 1 66 2 68 68 72 58.0 6e-12 MNEETLKIVLNDKSFSKDEAISIVGGLRRFTRLCATGRIRYRKKSTAQNGRWECNAFDVI KNASLR >gi|281306074|gb|ADEF01000013.1| GENE 18 14147 - 14443 242 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|261881072|ref|ZP_06007499.1| ## NR: gi|261881072|ref|ZP_06007499.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] # 4 98 2 96 96 152 82.0 5e-36 MKPITFYENKYEGNHLVLCGIYAGKAMKNLCLCVVDALHFFKRLIRRYPFASLFVVVLAS TLLSYVEIGKARAERDKLSHELYVMKQKTEQLGNIKNR >gi|281306074|gb|ADEF01000013.1| GENE 19 14448 - 14771 170 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|299142813|ref|ZP_07035941.1| ## NR: gi|299142813|ref|ZP_07035941.1| hypothetical protein HMPREF0665_02422 [Prevotella oris C735] # 9 106 4 101 103 122 61.0 7e-27 METNKIMNKILLTFILLTALSGCKPKPFKGFLVCKEYIQGHMDNVSVEPIQEAYVSVHVA VPRIHTHKYIPSEWIFYVANKDCVLRFNVDSLTYIKHRVGERIVMNN >gi|281306074|gb|ADEF01000013.1| GENE 20 14796 - 15077 251 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879425|ref|ZP_06288166.1| ## NR: gi|282879425|ref|ZP_06288166.1| hypothetical protein HMPREF0650_0109 [Prevotella buccalis ATCC 35310] # 2 73 92 163 212 102 77.0 1e-20 MRINNGCKSQNDNEMQRTGFSMNANDLTERGKLVHFPYKTADAKVEIEITGKAINIQAGN VSVKIPRSSTQAVCNKGKGYNSEVELKENGDKV >gi|281306074|gb|ADEF01000013.1| GENE 21 15074 - 15259 229 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879972|ref|ZP_06288694.1| ## NR: gi|282879972|ref|ZP_06288694.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 61 1 61 61 96 100.0 4e-19 MNSRVFFDKVALMRRLQQEYFKTRSKTVLEQCKAVEKEVDVEIKRVNAILGNQPIEKSLF R >gi|281306074|gb|ADEF01000013.1| GENE 22 15266 - 15352 57 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIAKIKELEIGNEYYRKILEHNQIEIKL >gi|281306074|gb|ADEF01000013.1| GENE 23 15349 - 15591 345 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880008|ref|ZP_06288730.1| ## NR: gi|282880008|ref|ZP_06288730.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 80 1 81 81 83 71.0 3e-15 MKTTVEVQIDIEDVYSELTYSEQQEFIKSHIDDIGGLGDVVELCFDNDCEVKEFVEANID KLSDEALINEIKKRELEVNL >gi|281306074|gb|ADEF01000013.1| GENE 24 15588 - 15911 142 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880009|ref|ZP_06288731.1| ## NR: gi|282880009|ref|ZP_06288731.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 107 1 107 107 188 87.0 1e-46 MKMFTELKRVYSNGYMNYVPKFQETFPELKHLTREELADRFSSLGIEFYTTERKPVPILI RLTMPFAFVTVAIMVLFMPLHYLITGRWHYCLKDNCKLFNWLSAIGL >gi|281306074|gb|ADEF01000013.1| GENE 25 15938 - 16150 166 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879973|ref|ZP_06288695.1| ## NR: gi|282879973|ref|ZP_06288695.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 70 1 70 70 125 100.0 9e-28 MREHLYWEEGIKLLYAYSAVFSIIGTVKVYSHFVTDSDETRRVALKWYGMSFLLFTVAFC LSVICDAFLK >gi|281306074|gb|ADEF01000013.1| GENE 26 16189 - 16509 325 106 aa, chain + ## HITS:1 COG:no KEGG:HS_1421 NR:ns ## KEGG: HS_1421 # Name: not_defined # Def: hypothetical protein # Organism: H.somnus # Pathway: not_defined # 1 97 5 101 352 101 54.0 1e-20 MEKKYRLLKNDTITVDGRTLHRIEALRDFADVKKGDKGGYIESEDNLSHKDNCWVYDDAR VFGKDRVTDNTWVADTARVCGNVCVYGKARVFGDEEIHEGKVASGE >gi|281306074|gb|ADEF01000013.1| GENE 27 16522 - 16962 471 146 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879975|ref|ZP_06288697.1| ## NR: gi|282879975|ref|ZP_06288697.1| conserved hypothetical protein TIGR01671 [Prevotella timonensis CRIS 5C-B1] # 1 146 1 146 146 260 100.0 2e-68 MTMAKREILFRGWNKKNKKWIYGYYFAYRGYHFISPDDKVNPLDTYEDYVIDADTVGQYT GLKDAKGTKIFEGDILGGDILGGDGRTHVIQYNEENSRFEAARKLSPERSQLSWLFQFDI NQDWIDEHKKVVIGNVHENPLPIKTE >gi|281306074|gb|ADEF01000013.1| GENE 28 16965 - 17174 112 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTKERYNTLAAELERRGYKKYIQSSYLGEDWGYFKHPKKRINRTILFFRLSSQCMILREC FLMRMIPFP >gi|281306074|gb|ADEF01000013.1| GENE 29 17328 - 17657 168 109 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|260174794|ref|ZP_05761206.1| ## NR: gi|260174794|ref|ZP_05761206.1| hypothetical protein BacD2_23259 [Bacteroides sp. D2] # 1 108 1 110 149 99 45.0 7e-20 MNRKELEKRYNNLAIIKCYDGRDEVHGYVCEVCHKEVFTTCADKGVTPFCISCECGGTMT HLKTYRKDTFPKDIRVFEFRRPSFKTMLKGGESMIQHVLNGGLVLDKNK >gi|281306074|gb|ADEF01000013.1| GENE 30 17659 - 17967 287 102 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|261881078|ref|ZP_06007505.1| ## NR: gi|261881078|ref|ZP_06007505.1| ribonuclease 3 [Prevotella bergensis DSM 17361] # 1 98 1 100 104 153 80.0 4e-36 MKARIIETGEEITIIGISEEWGTAQYYGSDGIYRQRTFNDKEIEFLDTNPPINWEQRRYE IAIDIMAASFNQPMDGVSIASYAHNCVLWADALIEELKKTSK >gi|281306074|gb|ADEF01000013.1| GENE 31 17964 - 18251 168 95 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNIMFITKKKIRKEIYRRYNDSSVEIIEMAYKWISDAPFWQWNTRLWCVCNVIWANTDA LNRAYDFISKGVLSKGLRQEQDSELLVRMVDAQMK >gi|281306074|gb|ADEF01000013.1| GENE 32 18169 - 18372 306 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879976|ref|ZP_06288698.1| ## NR: gi|282879976|ref|ZP_06288698.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 67 1 67 67 125 100.0 7e-28 MQQKVITIAKRFQAVDQYYLNLDSITKDINDKGWIIKQIISTSFEHQPFGQEARYPVLAV TLLIEHP >gi|281306074|gb|ADEF01000013.1| GENE 33 18537 - 18722 270 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879977|ref|ZP_06288699.1| ## NR: gi|282879977|ref|ZP_06288699.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 61 1 61 61 83 100.0 5e-15 MNQLKLKDIPSDLLAKIDEQFNQHPKIRQMRIKQQMLTARGMIAQALDIGKEIEELQITL M >gi|281306074|gb|ADEF01000013.1| GENE 34 18762 - 19052 89 96 aa, chain - ## HITS:1 COG:no KEGG:BVU_3208 NR:ns ## KEGG: BVU_3208 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 5 85 4 84 85 94 54.0 1e-18 MRTNSPEAIAITKRFFIAIDYLIATRQIRGLNTFAKMHNINYWNLCTIRDEPEKRVLKVE YIAYIVSDFNVCPEYILFGYGSIIKDDIIECDTKEP >gi|281306074|gb|ADEF01000013.1| GENE 35 19121 - 19882 467 253 aa, chain - ## HITS:1 COG:no KEGG:BDI_0844 NR:ns ## KEGG: BDI_0844 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 10 246 1 221 222 63 29.0 8e-09 MDESQKNTEMNDVQKRLNEFIVYLGISTAEFEKTTGLGNGFSQKTNERMRNSSKNLISKY YPELNMKWLIKGQGEMLNKNYTTNTSDNDHRTITDNTPITNKNLVVSGKRKIPFYDDVST IGGTNELVAGLETSIASDYIDTGDWFKEATSAIRHYGDSMVEYPSGSILALKRVHDVSLL VWGRNYCIETTEFRITKRLQDGGDDYIIAYSSNKETYPDGTLVHSPIRIPKKSIRHIDLV LGCVTKEYSNNLL >gi|281306074|gb|ADEF01000013.1| GENE 36 20017 - 20244 69 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|153808057|ref|ZP_01960725.1| ## NR: gi|153808057|ref|ZP_01960725.1| hypothetical protein BACCAC_02343 [Bacteroides caccae ATCC 43185] # 6 73 15 82 87 85 52.0 1e-15 MKKNEQKMTLRDYYESLPDASCPKTDFINKVASKTGVTSSTVRNWIFYGMKPANENHIMV LTDITGIPRNELWED >gi|281306074|gb|ADEF01000013.1| GENE 37 20232 - 20795 159 187 aa, chain + ## HITS:1 COG:no KEGG:BT_0850 NR:ns ## KEGG: BT_0850 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 172 3 173 174 141 42.0 1e-32 MGGLEFYIFEGELWCKYDNGKNQVVDENQTELIKSILCDIRECYPVAYKALISEYQNSSL NVPYFQYLIVRRFCKCNFGKLDGTKSDIDRSGRFNFEKVECPLRGECKFEGIICCPKFNS KLSDAELRVMKLIYQGASKDEVAEQLYISPNTVKNHIKSVYLKLGIHEKSEFIRYAESNN LFNNLTH >gi|281306074|gb|ADEF01000013.1| GENE 38 20801 - 21730 812 309 aa, chain + ## HITS:1 COG:no KEGG:Coch_0875 NR:ns ## KEGG: Coch_0875 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 3 308 2 311 314 249 41.0 1e-64 MTSLFKKPSELAINSTIKVLVYGAPGMGKSTLGLSAPSPVLLDFDGGVQRVNGAFQVPTL QVEKWDDVIAALNEDLSEYKTIVIDTAGKALDFMSAYIIKNEPKLAKRDGSLSLQGFGAR KNMFINFLKQVSMMGKNLVFIAHEREDKDGDQKIVRPEMGGSSVGDLIKELDLVGYMQAY GQKRYVYWGVNEKAYTKNTCNLPNAMEVPTIINEKGTVTGENKFLSNIFTSYHTYLKNER ETRKEYDELIDAAKEDVEAIVDASTANDFCKAFSDTKQIWDSKLKIGMLVKEKCDKLGLK FDKKNKKYA >gi|281306074|gb|ADEF01000013.1| GENE 39 21723 - 22538 496 271 aa, chain + ## HITS:1 COG:no KEGG:BDI_0853 NR:ns ## KEGG: BDI_0853 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 3 269 4 255 258 159 40.0 7e-38 MLKYRFYPTLLDRFQSYLDTQVEDYFYQDEQGKWHKNYNESDETLHFSQEEVDALLKQEL LDAINRVPHEPSEAASKGTALNEVVDCLIHNRNSDNENVKICTAGFNGINAIKATCDGFE FLFDIPFCKSIAEYFKGSLSQVFTSATLNTKYGEVELYGYIDELRENKVYDLKTTSRYEF GKYAKYWQRHAYPYTLIESGMCTDVTSFEFTAYALKGGTSRTPLITGVQYPEVYQYDHEQ SKVMLKDICERFCEFLEENRNLIINKKIFNE >gi|281306074|gb|ADEF01000013.1| GENE 40 22544 - 23011 348 155 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879982|ref|ZP_06288704.1| ## NR: gi|282879982|ref|ZP_06288704.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 155 1 155 155 274 100.0 1e-72 MANQISGKVLIIDDAISIPTRSGNTFTKRQIVLDVSHYDSMTGQKFENYPAFDFVGNRVN ELDNFKVGDLVTISFALNGRPFEKDGKTTYFTSVNGYKIEPYQRPNGSYQQSNVSQDNNS TPLSTQQTTSGQNEQPFPPKVDDSGAPKNEDDLPF >gi|281306074|gb|ADEF01000013.1| GENE 41 23015 - 23254 209 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879983|ref|ZP_06288705.1| ## NR: gi|282879983|ref|ZP_06288705.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 79 1 79 79 141 100.0 2e-32 MKEERITQKIVVLQHLKRFGSIEPLTALREYGIYRLGARIADLRSEGYHIITETKASVSR ITGRSVHFANYKLVGNGSV >gi|281306074|gb|ADEF01000013.1| GENE 42 23241 - 23681 310 146 aa, chain + ## HITS:1 COG:no KEGG:BDI_0854 NR:ns ## KEGG: BDI_0854 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 3 146 2 145 145 164 54.0 7e-40 MALYNLSNEYDLQNFKEKCNEMVRKKAYVELKNKLTTRSLVQNSYCHVLLGYFGSEFGMT IEQVKYDFFKRKCNKDIFERTRTNKRGQQVTYIRSTTELDKGEMTTAIERFRNFSASECG LYLPSPHESEMLFYAQQQIESNKEFL >gi|281306074|gb|ADEF01000013.1| GENE 43 23696 - 24346 764 216 aa, chain + ## HITS:1 COG:no KEGG:BVU_2857 NR:ns ## KEGG: BVU_2857 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 7 216 5 217 233 150 44.0 4e-35 MLADLKEYRPAKIDFVLDDKAKDTFKDVMVICKGAKSSKEPLKVFKEKFNCLFPEGELAT RQYDAHEIAMIREEYCLKEENDVPKRKQELQETLEAVKAMKKAAEEAYNSILLEIADLAA RVKHGTTDFKLSSTETVRIALNGYFLFYSWVDGEMKLVKTQKIPDWDRNGLWSQEDVNRE AMKELFEVEFPEVEKPAMDESEIQEEDDDLPFGNED >gi|281306074|gb|ADEF01000013.1| GENE 44 24404 - 25579 558 391 aa, chain + ## HITS:1 COG:VC1636_1 KEGG:ns NR:ns ## COG: VC1636_1 COG1061 # Protein_GI_number: 15641641 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Vibrio cholerae # 3 354 65 420 420 173 32.0 5e-43 MKYILRDYQKQASDAAVKSFKSSKKINGLIIVSTGGGKSLIIADIASRLDSPLLVFQPSK EILQQNFAKLQSYGILDCGCYSASVGSKDINRITFATIGSVMNHMEDFKHFKYVLVDEAH VINSKGGMYEKFINAEERHVIGLTATPYRLSSYMAGSMLKFLTRTRPRIFSEVLYVCQTS DLLAKGFLADLKYYDLTAINLDNVRSNSTGADYDEKSLKMEYERSGFFDKLTTTTLRVLK PKSGVPRKGILVFTRFVEEAENLVRKLRSINIPAEVVTGNTSKSDREWMLEKFKSGEIKV IANAQVLTTGFDYPELDTVIMARPTKSLALYYQCVGRAIRPFKGKDGWIIDLCGNYRRFG KVSDLKIDVEKPNSQLWCVKSNGKILTNRMF >gi|281306074|gb|ADEF01000013.1| GENE 45 25581 - 25958 272 125 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879987|ref|ZP_06288709.1| ## NR: gi|282879987|ref|ZP_06288709.1| hypothetical protein HMPREF9019_0915 [Prevotella timonensis CRIS 5C-B1] # 1 125 1 125 125 239 100.0 4e-62 MRDFLDLFQMIAECERKSRSASASFQKGAQMPVFPDEIDLYNFFERFDSHAIGKYHDFYA KYVAGRDLLAVFNIVDYLKERPNFVNITYWLGEHRYYAIRFKKRGVFLVSEKKYKELKTR KGCTV >gi|281306074|gb|ADEF01000013.1| GENE 46 25882 - 26058 58 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MICKSFEQCSQLKLRETVKNTIDESSATYIKTSIILYTLSLFSILCIFSRSRGIRHVS >gi|281306074|gb|ADEF01000013.1| GENE 47 26116 - 26523 188 135 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879988|ref|ZP_06288710.1| ## NR: gi|282879988|ref|ZP_06288710.1| hypothetical protein HMPREF9019_0916 [Prevotella timonensis CRIS 5C-B1] # 1 135 31 165 165 270 100.0 1e-71 MLKEFNCEIYPRKLWVATSFEDVKDKFVCHKNDEKPIEKYEDGNAYTYQCVMHKKSKKYG TLILFVFEGEVLGSDIVKRIAHESLHAVNSIFNELGIEYDLSNDEHAAYMVGWVAKCCWK VLQNEIYKENDESKD >gi|281306074|gb|ADEF01000013.1| GENE 48 26507 - 26929 403 140 aa, chain + ## HITS:1 COG:Cgl1859 KEGG:ns NR:ns ## COG: Cgl1859 COG0756 # Protein_GI_number: 19553109 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Corynebacterium glutamicum # 3 140 7 147 149 92 41.0 2e-19 MKVKIKKLVEDAVIPRYAKNGDAGLDLTATSIEQKGEKIIYHCGLAFEIPEGYFGLVFPR SSNAKKDLLLTNSVGIIDSGYRGEITAVFQKTRLLHTDLYNVGDRFAQLIILPYPKIEFE EVEVLSKTERGIGGYGSSGK >gi|281306074|gb|ADEF01000013.1| GENE 49 26910 - 27278 171 122 aa, chain + ## HITS:1 COG:no KEGG:Aave_1600 NR:ns ## KEGG: Aave_1600 # Name: not_defined # Def: hypothetical protein # Organism: A.avenae # Pathway: not_defined # 12 100 5 92 113 72 37.0 4e-12 MGAVENRRSICYLSGPISGKDLIERRKTFMSAKMMLEAAGYNVVNPMENELPKESTTAQH MKRDIQLLTECDTVFMMDGWNHSQGCYTEFMVATAIGCEIIFESKMSNIKLGENKRFKTI FL >gi|281306074|gb|ADEF01000013.1| GENE 50 27275 - 27763 257 162 aa, chain + ## HITS:1 COG:no KEGG:BDI_0857 NR:ns ## KEGG: BDI_0857 # Name: not_defined # Def: putative recombination protein # Organism: P.distasonis # Pathway: not_defined # 27 158 26 157 157 146 55.0 3e-34 MTNKYYFKKNTKDAHSEEKAHRKRPTRSKPNLTKKLDKVFSAYIRLRDAMPSGYFRCISC GQIKPFEQADCGHFFSRRNMSVRFDEDNCHAECKFCNRFSSDHLIAYQANLIRKIGMQRF ELLSAKSHQSKHWSDFELEAMIKHYTAEVKRLSSLKGIKVNI >gi|281306074|gb|ADEF01000013.1| GENE 51 27975 - 28160 198 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNHSCYFVVQSWMMTDLHLSGIKRDTYALLHRFPVDIFTGPTNVYFYQKHYALPRKKLCI T >gi|281306074|gb|ADEF01000013.1| GENE 52 28240 - 29169 572 309 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879992|ref|ZP_06288714.1| ## NR: gi|282879992|ref|ZP_06288714.1| hypothetical protein HMPREF9019_0920 [Prevotella timonensis CRIS 5C-B1] # 1 309 1 309 309 571 100.0 1e-161 MIMKGIQYSLTFHFREVIELGIDVNLTDLCIFEFLRSFETKSYCQKEKLDDGKIYFWVSH DLIMQQLPLLGIKSKRNIIAHVNKLVESGLLIRYKNTQGVSKSYYRFSSIADKIDNGHPS DEIITPPLTKSSHPSDEIITPPLTKSSHNNIQDIQEQEYNISPNGGLSASALDSKDEKKT VPKTKPKKEQSIVTKGRKIFELYFEKKTSEKYYWKAADGAQMKRLLNQLKFSRTNKGMPV SDEDLLYALQVFLDKITDNWMLSNLSVPNISSKYNELVAQAKRSNGKIGIFLRDNTDEKY LNQKIKQWK >gi|281306074|gb|ADEF01000013.1| GENE 53 29160 - 29726 286 188 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879993|ref|ZP_06288715.1| ## NR: gi|282879993|ref|ZP_06288715.1| hypothetical protein HMPREF9019_0921 [Prevotella timonensis CRIS 5C-B1] # 1 188 1 188 188 356 100.0 3e-97 MEVKDQSVFADVEKKEIFSIKIEDANGLLMRGLKFFTGEDAQWAPEYDEISDWLTDNKHK GLLCYGQCGRGKSLICEKIMPNIFRYYLRKNLIKFDGYEINDKRQLLRDCECSILIDDFG VEDVGKIYGETHNVFEEVVSLAEKRHQMLLLTTNLTLDEICDKYGERTLDRLRYLTRPVL FTGESFRK >gi|281306074|gb|ADEF01000013.1| GENE 54 29723 - 30139 206 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879994|ref|ZP_06288716.1| ## NR: gi|282879994|ref|ZP_06288716.1| hypothetical protein HMPREF9019_0922 [Prevotella timonensis CRIS 5C-B1] # 1 138 1 138 138 256 100.0 2e-67 MTRRQEIENIIIGTLLNTFDTDWFAECSYCITADMFEDKRNANIYNVICEYRKTGDAPIT PYHLIKFDKNLITLAEHIIDLATNFYFLVKKVEYNETVWRYRLINGKRYRYTDVKFSDYV SKFIEIVIKERKTQNKAI >gi|281306074|gb|ADEF01000013.1| GENE 55 30248 - 31615 969 455 aa, chain + ## HITS:1 COG:XF0361 KEGG:ns NR:ns ## COG: XF0361 COG0305 # Protein_GI_number: 15836963 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Xylella fastidiosa 9a5c # 14 443 27 462 471 139 28.0 1e-32 MKEKEKVKIIGEAQVQPHDDNTEIAVLATLMRYNEKYSEYSDMLTEEMFYQDKNKAIYQC IAGVIRENKVSDVKALFDYAKTHEIAYPLDELSFLDIVKFVSIETLDQDISRLRRMWKQR KLWVEFQLASQKVLDPMEDFDEVVNDAINRLGEIQNDMAYNGIYSFDESVDELKEIVNDN AKGKRKSLETGFKLFDEHFLLRPTTLTVIAAFTGVGKSSIAMNIAMNTANLGNGVAYYSL EMGKSELAARAISGKAGISSSVIVNCKLEEYQLQQFDRAVGETGGLPIYIDERATVSFDN TIKSIRTLVRTKNIKLAVIDYLQIYSQVGNSVEASLAYMARSAKNIAKECGIAVILLSQL SRGSSHPSINQLRGSGQIEESADNIVLIDRPEAYPNNSIRYEGDFSDQDTHGTAKLILAK GRGVGTGNALVGFDGRFTQFYELNNKPQVDDNTPF >gi|281306074|gb|ADEF01000013.1| GENE 56 31817 - 32401 486 194 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879996|ref|ZP_06288718.1| ## NR: gi|282879996|ref|ZP_06288718.1| hypothetical protein HMPREF9019_0924 [Prevotella timonensis CRIS 5C-B1] # 1 194 1 194 194 337 100.0 2e-91 MERLSIKDVPSDMLRQIRNQFESDVQIRQLRIKQNLLQRTGNFAKAMELGKTIESLYEKV IDSYIEETIKESDKFSLEEAGIPVNDIKKVNEYAVTMFMACDIIQSCIIDINDLLHKTDK DLHYEQFDDIKQISEMVKSKLDFLQNNSTYMNNVFWGDKCDDMYSMMLNKAKAIIRKRNN DKSWNVEFDKMKGE >gi|281306074|gb|ADEF01000013.1| GENE 57 32404 - 32817 310 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879997|ref|ZP_06288719.1| ## NR: gi|282879997|ref|ZP_06288719.1| hypothetical protein HMPREF9019_0925 [Prevotella timonensis CRIS 5C-B1] # 16 137 1 122 122 203 100.0 3e-51 MSYRYSKNFNSNYPLMSQSELKNAPWNEVSIPAIERDCEVTETISKRIALSTTDYSVEED WNDEFGKCTSVDTSETDWNEEYSCKEYTVLELIDKLKAYVEVDIKNTSPNTGKGRELQRL LSACSGWEQVESEVEEC >gi|281306074|gb|ADEF01000013.1| GENE 58 32820 - 33353 349 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879998|ref|ZP_06288720.1| ## NR: gi|282879998|ref|ZP_06288720.1| hypothetical protein HMPREF9019_0926 [Prevotella timonensis CRIS 5C-B1] # 1 177 4 180 180 332 100.0 7e-90 MGFRISFERVPKGFKLRNSFKDCNDYERYYDEYKKVRECVKHDTCTDIFHEVSNENNRLF TQIDENEDTVLGTVSKEQLFQWIVEIKKRFISYLETMLGDDEKSLIRMKDYVNTKNERWH YSWNGVPLSMELNLKEETDIDKMLVSGSSTYEYEIFNFISIYKNFDFARYELIIYGG >gi|281306074|gb|ADEF01000013.1| GENE 59 33358 - 33630 248 90 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879999|ref|ZP_06288721.1| ## NR: gi|282879999|ref|ZP_06288721.1| hypothetical protein HMPREF9019_0927 [Prevotella timonensis CRIS 5C-B1] # 45 90 1 46 46 85 100.0 8e-16 MKAYINSNTAELRGWLKGIGLLPIDYPECDRYNGLIVPYHIRKGMPHEGKDVVIFYRDGV VYDTDDDAEDYYFCESEEEFKEKVLELTGK >gi|281306074|gb|ADEF01000013.1| GENE 60 33634 - 33987 218 117 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880000|ref|ZP_06288722.1| ## NR: gi|282880000|ref|ZP_06288722.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 117 1 117 117 217 100.0 2e-55 MAQIATTREQSKKLQELGVTTDTADMFYPLGSSFPEVCDNEDNLQADCPAWSLGALIRLL PDEVRNERFSVTYYLTIDKYGIWYSNHMENEENEYECYGDLFECCIEMIEMLKLNFV >gi|281306074|gb|ADEF01000013.1| GENE 61 34085 - 34261 215 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880001|ref|ZP_06288723.1| ## NR: gi|282880001|ref|ZP_06288723.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 58 1 58 58 108 100.0 1e-22 MKKFEVFFWRQNPQLSKGGYETSREIEARSLASAQKKADKIASNCPYGNLRILRIEEC >gi|281306074|gb|ADEF01000013.1| GENE 62 34274 - 34537 302 87 aa, chain + ## HITS:1 COG:no KEGG:BF1346 NR:ns ## KEGG: BF1346 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 87 1 78 160 62 36.0 4e-09 MKTSEVNESLIGKRVSCVFTGMQTTGTIIGIVHDYDKWSPNRPLCSKGVRIKLDYPIQWG DDEYDEIETTSRVSDEYGSLSKTHLID >gi|281306074|gb|ADEF01000013.1| GENE 63 34552 - 34743 128 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRVGIFTLGSLLLSPFVICLVSNSLPIIVGGFVYLGLLLRLTPKSWRKRFMIVSARYSK LIG >gi|281306074|gb|ADEF01000013.1| GENE 64 34763 - 35056 274 97 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYSQQNEQAYQEIYQPLFDKLNSGRFFPNISAIRNKIKDLNRRMDVLSNGVFFASSLKE VEIVEDRLDVLRGQKRAYQDILDYVNWRINETKLANK >gi|281306074|gb|ADEF01000013.1| GENE 65 35068 - 35922 623 284 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880003|ref|ZP_06288725.1| ## NR: gi|282880003|ref|ZP_06288725.1| hypothetical protein HMPREF9019_0931 [Prevotella timonensis CRIS 5C-B1] # 1 284 1 284 284 590 100.0 1e-167 MGEYAKRKADGTDIKIGTCKSMYYCRYDQRKEVEYPYNSDNFYWRIPTPDEDGTLPGDYD FSLLTKDGYIPRKLELYTFKFSEEDIAGMKQSGTVQLKEPRMGLLVNIHCPHGFLMEQFK PNKDGIVYSMGYNGHRDTLYLKGLKNEPTELKVLVECSCCGQMWSFSFGDIEPLIKSLWL KLRLLHQISDYHYQHSEEPYTVTVSSKQYCGKEVSISQPKKGWWIVKSDDVVVSSGDWEK CKNYFISTLPYVSNFEGQILSSRNEELYSIACEVDEMRSHINNI >gi|281306074|gb|ADEF01000013.1| GENE 66 35927 - 36091 272 54 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880004|ref|ZP_06288726.1| ## NR: gi|282880004|ref|ZP_06288726.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 54 1 54 54 82 100.0 7e-15 MKEFEVIVTETLQRKVKVQASDEKGARAKVFDMYDNEEIVLSDNDFWDYSIEVV >gi|281306074|gb|ADEF01000013.1| GENE 67 36088 - 36501 359 137 aa, chain + ## HITS:1 COG:no KEGG:PGN_0048 NR:ns ## KEGG: PGN_0048 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 137 1 138 138 140 56.0 2e-32 MKGTDNFKRTIQDYLEVRAKTDELFAKSYAKPNKSIDECITYILNEVKRSGCNGFNDDEI FGMAVHYYDEDSIDAGKNINCRIVVNHTIELTEKEKQELKDKARNDFYNEQLAKQRESLK PKKKAEPKVVEPSLFDL >gi|281306074|gb|ADEF01000013.1| GENE 68 36630 - 37664 466 344 aa, chain + ## HITS:1 COG:no KEGG:BF0107 NR:ns ## KEGG: BF0107 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 5 339 93 438 443 190 32.0 6e-47 MYRYFVISSRVKNWQVCRFFQIRKQRQLYEVIEPVRLWFSADGHMEIEAMNRFCMSGMLD IWLVGSDLSLKPVPALYKDYTQMLPISVSKITSALPILKRNGLKGSFHNMQPRDVIEGLL KNNMFETLWKCKQYSLLHALAYNWDRDYNDTDKMAAVKIVLRHGYKVTDGRIWLDMIDML QRSQKDIRNPKFLCPYDLEKAHDEAMNMYHKYEERQRKIAERKKLLEDRKAAKEYEIARK CFMGFKLTDGTIVIQVLPTVNAVMKEGEVMHHCVFAAGYYKRLDSLLLTAKVNGERAETI EVDLKRYKLVQSRGVCNQNSKYHDKIVNLVNENMNIIRKFNQVV >gi|281306074|gb|ADEF01000013.1| GENE 69 37661 - 38074 266 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880007|ref|ZP_06288729.1| ## NR: gi|282880007|ref|ZP_06288729.1| hypothetical protein HMPREF9019_0935 [Prevotella timonensis CRIS 5C-B1] # 1 137 1 137 137 244 100.0 1e-63 MKTEITDEILALANESKRLRSFINDKLPKLRERCKDRKDGLDKHRDGFELDEAIQSFNIK LSYQSFSGNYGSSSVYSDFCPNNEIMGKYFLKYLNKHTSEIFNEMADMMIADAKVRQGEA IEELNSLKTKMEKIIEL >gi|281306074|gb|ADEF01000013.1| GENE 70 38071 - 38316 283 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880008|ref|ZP_06288730.1| ## NR: gi|282880008|ref|ZP_06288730.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 81 1 81 81 120 100.0 4e-26 MNTTVEVKVSVDIDDVYNELHWDEKEEFLKSHIDDLGGLGDISEQCFGDEEVAEFVEANI DKLSDEALINELKNRELEVNL >gi|281306074|gb|ADEF01000013.1| GENE 71 38313 - 38636 140 107 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880009|ref|ZP_06288731.1| ## NR: gi|282880009|ref|ZP_06288731.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 107 1 107 107 207 100.0 2e-52 MNMFTELKRVYSQGYMNYIPKFQETFPELKNLTREELADRFNSLGIEFYTTERKPVPILI RFTMPFALVTFAIMVLFMPLHYLITGRWHYCLKDNCKLMNWFDAVGF >gi|281306074|gb|ADEF01000013.1| GENE 72 38906 - 39313 288 135 aa, chain + ## HITS:1 COG:no KEGG:Ava_B0332 NR:ns ## KEGG: Ava_B0332 # Name: not_defined # Def: hypothetical protein # Organism: A.variabilis # Pathway: not_defined # 1 111 1 111 421 67 35.0 2e-10 MKIYTSYFANSKKLQQAGIKVIGIALYPPRWFYGISLKQVSPTKSILFAKDQTEEEYIRR YKSEVLAHQNMHQFLRAVEAVSNGKDVALCCYEKPEDFCHRHVLAEWIKEKTGIEIKEFG YVPKKEPEYVQGSLF >gi|281306074|gb|ADEF01000013.1| GENE 73 39267 - 39377 59 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLKRSQSMFKVVCSKLIRYGKAERRLTVGQTIKAS >gi|281306074|gb|ADEF01000013.1| GENE 74 39545 - 41626 1128 693 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880011|ref|ZP_06288733.1| ## NR: gi|282880011|ref|ZP_06288733.1| hypothetical protein HMPREF9019_0942 [Prevotella timonensis CRIS 5C-B1] # 1 693 1 693 693 1355 100.0 0 MTGFVSDIRTRTFGIEIEMCNVERSKVELPEGYSWSKEENIFNTDGSSNRNFGGEVNTPP LHLCTKDLHELKDLYESMVNAGGKLKWSIDTHVHIYAGDLSVEQLRKVFLFFYVCYPYFK KYAHISDCDELTFNCQPLPAEKYYKGVLNAKTFDDIRELFTNQSKEGFIRHAVNISALFK TKTIEFRMFHATDDFYKAMNCVYSAYRIFYYAVNHDLSDFKNISSYKDFKAVTKLKYNVP KELVPLLYQGNPYSAIETFMTNPLPYNSKQASALYEAVKKNGYKEISIVNGFMYYYELFF YEKLCVSIYSQDPYCHLLYLIANGFTTLTYKNKLAWLEYYNDKTIKRQFSLALYAASLQK FFMSKSARNHAIFEALKVKAKESIEKTEKANDRLLRMLTTCEYHVGTLQDAINCKQVIFF NYGKDKKQKRTFKLIQENSDLDMDFSVSKNEYYDLVESLPNETFFYFISNSPFLSNMYKL AMFKTSAGDRRSAGRFLYCNKPSATSEVSTFYKGNHIEVNEIVPPDDLEINNPKNLKVVR VSPDYLYCLQKKYINKVDMVSRCTYAFVVMYDKYTLGGFGFTLPQHKGYDLFQLTDFCTN NAIPRLSKLILFCIQTSVVQKELSRRMHKLVEKVISCAYTHKPVSMKYRGVYTKVKDHCT SSYLAYEGMLGKFSNNKEVIDKYQSLLKNGQRK >gi|281306074|gb|ADEF01000013.1| GENE 75 41610 - 42320 455 236 aa, chain + ## HITS:1 COG:no KEGG:EUBREC_2116 NR:ns ## KEGG: EUBREC_2116 # Name: not_defined # Def: hypothetical protein # Organism: E.rectale # Pathway: not_defined # 11 228 29 245 307 65 28.0 1e-09 MDSENRWKYEKVDISLIDEADMNANEMTGEDFAQLCDNIDKSGLSSVPSCYKKDNGRFVM ISGHHRLRACKKLHYKTIGILYCLESELSKDEIIAIQLSHNSLHGHDNRSILKKLFEQIQ SVDFKQFAHVNVDEISPVSTDGISMFALKENFVFTVILYPDSFENLEELYGDIREQASKS DTLILASEKENEKLLLTLQTEIGKQYDIKSPSITFAKLLELAKERLTEIRKNDKNN >gi|281306074|gb|ADEF01000013.1| GENE 76 42304 - 43161 542 285 aa, chain + ## HITS:1 COG:no KEGG:Csal_2188 NR:ns ## KEGG: Csal_2188 # Name: not_defined # Def: D-alanine--D-alanine ligase (EC:6.3.2.4) # Organism: C.salexigens # Pathway: D-Alanine metabolism [PATH:csa00473]; Peptidoglycan biosynthesis [PATH:csa00550]; Metabolic pathways [PATH:csa01100] # 51 284 69 312 314 80 25.0 5e-14 MIRIIETTTDKESYVSKRNTLFITEALGKENVRFHKLQNPDDLSELGIDNDDILIAETRD GFVRYAISMLGCRNTVESDRTIVLTQNKEYVKHELQRYGILSPCKITIEEVKDGCKYFVK PVFGEDSNFVGVDSVCQSKEEAWRKADEIQKAGFTPMIEEFIDGEEYTVALIRKEGKIET YPIKVHLFTPWNIMTHTAKFSEEEICEAVNDAELEDIAKKAFEVVGCKHYMRIDFRRDSQ GRYYLIDFNLFPGLGPTDHFAKCINLHLNISYHDILTKIIETATK >gi|281306074|gb|ADEF01000013.1| GENE 77 43173 - 43517 230 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880014|ref|ZP_06288736.1| ## NR: gi|282880014|ref|ZP_06288736.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 114 1 114 114 201 100.0 1e-50 MKNNITIEKIAEVYKKKGCNITAACAALNITRQTFYNRKSKSKKLCEMIEDADESLLDFA ESKLVEHINDGDVTSLIFFLKTKGKKRGYVERSEHDINSNAFQELMESLPIDED >gi|281306074|gb|ADEF01000013.1| GENE 78 43771 - 45021 656 416 aa, chain + ## HITS:1 COG:HI1410 KEGG:ns NR:ns ## COG: HI1410 COG1783 # Protein_GI_number: 16273317 # Func_class: R General function prediction only # Function: Phage terminase large subunit # Organism: Haemophilus influenzae # 190 400 158 385 394 65 26.0 2e-10 MTAPTGRQCINIMIPEVARLFRNASVLPGRMLSDGIRTNNAEWFLTAFKASDDNTEAWSG FHAVNTMFVVTEASGVSETTFNAIEGNLQGNSRLLLVFNPNVTTGYAAKAMKSSRFKKFR LNSLNAENVIKKKNVIPGQVDYEWVKDKVHNWCELIQKEDFNNGEGDFMFEDSFYRPNDL FRIKVLGLFPKASEDTLIPFEWLELAHDRWKKLNAEDFVPRKYARVGIDVAGMGRDSSCF VLRYGNYVPEIKIHQSGGKADHMKVAGEAVQWLVEKNTKVMIDTIGEGAGVYSRLLELGY DNAYSCKFSEGTKGLHDITGQYEFANMRAYCYWAVRDWLNPKNGFNPALPPCDELDAELT EVHWSFQSSGSIIIEPKENIKSRLKRSPDRADALISTFYPNTKDYTNDAWILRNVL >gi|281306074|gb|ADEF01000013.1| GENE 79 45231 - 45413 167 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKFRVTTEVKNGRYYFIISEVKSGKVISKRSCENASHKRDLLFSSIIRKYSLKDTCFDF >gi|281306074|gb|ADEF01000013.1| GENE 80 45426 - 45671 183 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880016|ref|ZP_06288738.1| ## NR: gi|282880016|ref|ZP_06288738.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 81 1 81 81 139 100.0 8e-32 MEFITVYLNSSVAHSATNIPAVRFNDLKQLAKKETVEIVFFKDYCRVVGKKSRKVKVPRK ITESSEELLKWIEQRIVTAWK >gi|281306074|gb|ADEF01000013.1| GENE 81 45662 - 45787 68 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEIISIIEGAYLSGFEPSDENLTAEQLLAEAQEYLFPSLTK >gi|281306074|gb|ADEF01000013.1| GENE 82 45802 - 46092 342 96 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKDMKEYTVFIDNAESCDCYEDFDIQDVIEEFKSNGFNVTEEAIIHNFEAWKSDYKSGY KDESNGYFLFTPCGCNALRFNATELINEDWQETYEA >gi|281306074|gb|ADEF01000013.1| GENE 83 46061 - 46348 225 95 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880017|ref|ZP_06288739.1| ## NR: gi|282880017|ref|ZP_06288739.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 95 1 95 95 169 100.0 6e-41 MKIGKKLMKHNIIPITEEDILNNKSCKANENFTSVTIKRPTLKEAKETDYRTLCLLVGSL GLKFRPLKGSVENANYWLKNKTKEELLDLFKYEFV >gi|281306074|gb|ADEF01000013.1| GENE 84 46335 - 46571 145 78 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|153806890|ref|ZP_01959558.1| ## NR: gi|153806890|ref|ZP_01959558.1| hypothetical protein BACCAC_01166 [Bacteroides caccae ATCC 43185] # 2 78 15 91 94 79 57.0 8e-14 MSLCNKTEKAKNLLKAGKFKEALSIIKAFRIGFTKEEKRSIEIAYESLSGNEQFYKSIGI DTDKEIEKVSLLLTHKYL >gi|281306074|gb|ADEF01000013.1| GENE 85 46702 - 48147 972 481 aa, chain + ## HITS:1 COG:no KEGG:BDI_0880 NR:ns ## KEGG: BDI_0880 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 13 416 11 433 493 133 26.0 2e-29 MVDFSSIDFDSTNISETISKLKEKSVNVPKWEKLYKDYEPLEHSILTDTTTLKDKIRSDG QVDKSSRIVIGLEKLHVKRMAEFTFSIPVKRVYSNIEDNETRKSISKAIEAVYKNVRINS ENLKRAAAYYASCEIFTVWYAVKKPNTLYGFPSEYKLKCKTFSPMNGVKLYPLLNEMDDM LAMSFEYTKTVKNKDVSFFETYTENRHYVWKCAQNGDKWEPVLIQETEDGELASGEEIVL MKIPGAYAWRERPVFDSLSKIREEIEYSLSRNSNVIAYNSAPLLKVIGGMKGREDKGEAQ RIVRCESGGDVGYVSWAQSIEALKYHVDTMEKMYWMQAQIPDISFDNMKGLGNIGYDARQ TLLTDAHLKIGEESGNWIEFLERECNVIKAFLKIMNRKWESEIDNVNVEHIITPYIQNDE LAEINRRMKANGNKPIESQLESIQKYGDSSDPAATLKQIQEEETIEASQRASAFNLDNQV L >gi|281306074|gb|ADEF01000013.1| GENE 86 48144 - 48332 237 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880019|ref|ZP_06288741.1| ## NR: gi|282880019|ref|ZP_06288741.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 62 1 62 62 90 100.0 4e-17 MTIEEVKVKKTEMEQKISSAMKEFEEGTGLEVGSIGFSRCTKSKELGIVEDYNYNVETNV NL >gi|281306074|gb|ADEF01000013.1| GENE 87 48329 - 48661 286 110 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880020|ref|ZP_06288742.1| ## NR: gi|282880020|ref|ZP_06288742.1| hypothetical protein HMPREF9019_0951 [Prevotella timonensis CRIS 5C-B1] # 1 110 1 110 110 185 100.0 7e-46 MKQKIAKLLVRIAGKLCPTYEIKPDYEPREIAIAVAITKKNIRQYRSSCKGKTSFRKAVT DMVRIQKGNNRSHIFESIEDNGLIVDRVYKKDGEKVVESRLKVYVRKSED >gi|281306074|gb|ADEF01000013.1| GENE 88 48835 - 50412 728 525 aa, chain + ## HITS:1 COG:no KEGG:GFO_2441 NR:ns ## KEGG: GFO_2441 # Name: not_defined # Def: hypothetical protein # Organism: G.forsetii # Pathway: not_defined # 62 334 47 328 341 136 30.0 2e-30 MGKPRLHNKRKEYKELSKRLAGYMMQVRTIYDRLNERAASIVESVGYDGAVEFSFADYPE TKRDLQLLQKQFVGDMQSLIYSGTSAEWKKSNLLQDLVANKALKYYRAQVAGKKFKHYYQ ANSDQLKAFQRRTERGLNLSEKLWNQSQVYKDSLEATISTAIEKGMSAVTLSKRISKYLN DWSSLQADYQEKFGKATNCYDCEYRSIRLARNEISMAYRSAEQARWQQFDFILGYKIKLS GSHPARDICDDMVGDYPKEFKFVGWHPNCLCYTVPIVMSEEEYWSDSRENSPNLVTAPPE NFGKWMDKATNLERIGKASERGTLPYWLRDNEKIKDCSLLMSKARNVGNAVQEQAEIIAK KYGGVVTPINYKGFSSMYRKLNSEKGMLVSDIKDSVRNTIIVDKENIDKVVKDLQGLSSF SRYKQQIPENFRGYSGNIINLKMPNGIQAEIQVNTPKMIYAKETETNARRILGDKIWEQI SKETGMLGGLGHKYYEEIRILDEEKDRVKIAELTKLSKSYYALFR >gi|281306074|gb|ADEF01000013.1| GENE 89 50469 - 50696 273 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880022|ref|ZP_06288744.1| ## NR: gi|282880022|ref|ZP_06288744.1| hypothetical protein HMPREF9019_0953 [Prevotella timonensis CRIS 5C-B1] # 1 75 1 75 75 125 100.0 7e-28 MDLVKLCNKLEKGAVYLKDDYEDIVLRIVVIDKSTHCFIKRRGRIEVEVDSTGKDIFESK MYGYEISKEEYDEFL >gi|281306074|gb|ADEF01000013.1| GENE 90 50683 - 51111 291 142 aa, chain + ## HITS:1 COG:no KEGG:CKR_1637 NR:ns ## KEGG: CKR_1637 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: not_defined # 9 141 6 139 145 128 53.0 7e-29 MNFYELREKAMQIAEKVHKNQVDKGGKPYINHPVRVERMCSRQEDRLVALLHDTVEDGDI ASEYLLMVGFPQEIVDAVLSVSRNRGEDYFDFIHRCKSNPIGRRVKLADLKDNMDVTRLN ELTDKDIERLKKYHKAYKILEE >gi|281306074|gb|ADEF01000013.1| GENE 91 51139 - 51657 346 172 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGGYEITGGKETKIGQQTQINNDMRKIVIFAFFIILFTACERSVVDKANVVISNSSTYKT IGTVDKIDSVFGYKDAYRIINLGREESWRIDSTLEANKNKISISQRDLLLQRAKNAYNLK TMAININVMHELSGLKKDFVGFRATKVDKKCTYILFFDKDLSKILGVDIIRK >gi|281306074|gb|ADEF01000013.1| GENE 92 51597 - 52688 604 363 aa, chain - ## HITS:1 COG:MA3840 KEGG:ns NR:ns ## COG: MA3840 COG4748 # Protein_GI_number: 20092636 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 1 344 4 350 362 250 43.0 3e-66 MDFKDAIMQISEKIVKQKEMVATEEATKTAFILPMINALGYDVFDPTEVVPEMDCDLIKS KGEKIDYTIMKDGEPIMLIECKDSKQVLDLHSTQLQKYFVASKSRFGVLTNGIEWRFYTD IDKQNIMDTKPFLVVSMLDLSNDDIEQLKKFHRAYYNEQEIISTANELKYMTEIKAIVQD EITNPSPSFVKYFAKQVCSGCVWQSVIDQFTPFVKHAFSNVINDIIQDRLNSAIKNEEQD TETLAINKTELDDSEIVTTQEELDAFEIVKAILSEKYDISDIYYKDFKSYFLIYYAKEPY WWICRFSLKQYSKYIVFPDKEHSGNYEKVELSSINELYNLKDKLWEAMRLQVERKQKSDN KHK >gi|281306074|gb|ADEF01000013.1| GENE 93 52934 - 53311 215 125 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKESVKNVLIEKFNSGLTKVVENTVKENIGVNTKFQVKVGQNKWSGFIITLIEDGNDVSK QLTATPLLSHLFRSGSLNVSVEYEEELETTFFRLQISYNHRNGGSNGYELLRFSVDNYNH IDFYK >gi|281306074|gb|ADEF01000013.1| GENE 94 53320 - 54756 869 478 aa, chain + ## HITS:1 COG:no KEGG:GFO_2470 NR:ns ## KEGG: GFO_2470 # Name: not_defined # Def: DNA-methyltransferase # Organism: G.forsetii # Pathway: not_defined # 7 474 4 514 515 345 37.0 3e-93 MNLFTENADFYPTPTDVINTMMLGEDILEKTILEPSTGSGNIVSWLKENGAGEVIACEKD KTLQKLLAGKCELIADDFLSVTSDQVSHVNYIVMNPPFSDAVKHIKHAFNIAPAGCTVIS LCNSSNLERRYSSERQELYELVELYGCSECLGTVFDTAERKTNVGVSLIKLYKTGEDEDE FAGYFFSNEDDILNKNEAEGIVQYNVVRDMVNRYTSAVKLFDETMEAANKINDVAKFSDS KFDYVPIRFTTVDRRGNAVSISRQQYKKQLQKYYWRIIFNKLNMDKYATNGLCEQINKFV EKQVNVPFTMHNIYQVISMVVQTTGQRMDKALLEAFDLICSFSAENSTAGEKWKTNSNYM INRKFIVPYMTDYDSRYSTLNEHMRLNYGGNVARIEDVIKALCYITGTNYDNITNLHDYV YRNNLSYGTWYEWSFFRIKGFKKGTMHFEFTDEDVWIRFNQQVAKQRGWVLPKKSKRK >gi|281306074|gb|ADEF01000013.1| GENE 95 55021 - 55773 815 250 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880026|ref|ZP_06288748.1| ## NR: gi|282880026|ref|ZP_06288748.1| hypothetical protein HMPREF9019_0957 [Prevotella timonensis CRIS 5C-B1] # 1 250 1 250 250 321 100.0 2e-86 MKKHFRKVLEALKTSKDIKALGFSRRELKGVAAKIADKLDSEIKEDATDEEIQEAVDDAI DAVMPFLQFSQVVSERRVQSYKEAHPTNDEADDDDDDADDPVNQSNRKSQASKKVKTSED DGGDDTPLAKALKPLMDKLDGMQSEITALKSGNTANSRKSKLEKLLKGTGKFGERTLKAF NRMSFKDDDEFEDFFEEVESDLESENQERANQGLEKLGAPDAFAGQANKRGSKNDEEIMS DDEVKELAEL >gi|281306074|gb|ADEF01000013.1| GENE 96 55808 - 56218 487 136 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880027|ref|ZP_06288749.1| ## NR: gi|282880027|ref|ZP_06288749.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 136 1 136 136 267 100.0 2e-70 MGAKADLVKDRTNIVTGIDSVVIRQYNGGITGGRTLDMTDFKEDVIKAGHIVIRTLDEDN KGCIYMPMPVQDGAYKALPAKHEYVGVVVCSKQANEPLVGIMDDGRVNDKAMPYPITEEM RTALKTALPNLIFEHD >gi|281306074|gb|ADEF01000013.1| GENE 97 56234 - 57550 931 438 aa, chain + ## HITS:1 COG:no KEGG:GFO_2436 NR:ns ## KEGG: GFO_2436 # Name: not_defined # Def: hypothetical protein # Organism: G.forsetii # Pathway: not_defined # 24 424 29 416 430 166 28.0 3e-39 MKESLFIQFIASIWPKLNLYIKEKDAPAKRTYLHKTMLTPVYSSDQKWEGTSAKTTYVAA DMVAMDSPLPIKKRGTLATSNGKLPKVGMKKILRETEINAINIMKAHYATATNEDVKKAE KQRILVKLLNDGEACSIGIDEKNEANFLTALSEGVLLVEDEDNVGTGLRVNFGYLDENTF GTTVKGHVSYEDIENIKSKADTDGNTITTLMLAKSKLNEIRKERWARELVADADDKVYTD SSTLKVPSVKKFTEAFEDEFDIKLVVVDRSVIFEKNGVQKSKKPWNAERMVFLCSDMVGS LVWGSLAESTNPVDGVKYAIVDQYKLISKFSKTDPLQEFTNGQSLVLPVIEDVDQIYIID CTESKSADVDTAAEASDTTDVFTTVNGKKYKKEDLIAQLKALGVKIAKNAKDDAVIAAIN SLSDEQEQTLFANVQAQG >gi|281306074|gb|ADEF01000013.1| GENE 98 57553 - 57879 163 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880029|ref|ZP_06288751.1| ## NR: gi|282880029|ref|ZP_06288751.1| hypothetical protein HMPREF9019_0960 [Prevotella timonensis CRIS 5C-B1] # 1 108 1 108 108 219 100.0 6e-56 MKTVLQALRDEIHYPIPVGFIENKLIERQLAGNLDFSYDITKSPEWKGALADCLYSLLQA VNYSESDKSVGTLTDKDKRRLLARINTLYKSIGEPTVDVDNPMVYFGE >gi|281306074|gb|ADEF01000013.1| GENE 99 57881 - 58219 295 112 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880030|ref|ZP_06288752.1| ## NR: gi|282880030|ref|ZP_06288752.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 112 1 112 112 231 100.0 2e-59 MAVLDFAAHILSYQTVTQGYEDPESGDYHEGQTYWVENAYKCDIVPAGKANTIAIPDGSI HPYSYTVYNLPHDCREFKYNDKIRINFFGNCDCKVFTVLGFHRYQHQCKIWI >gi|281306074|gb|ADEF01000013.1| GENE 100 58260 - 58703 341 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880031|ref|ZP_06288753.1| ## NR: gi|282880031|ref|ZP_06288753.1| hypothetical protein HMPREF9019_0962 [Prevotella timonensis CRIS 5C-B1] # 1 147 1 147 147 264 100.0 2e-69 MILYKSFEILKNEITKSLVKLGEECIAKIRDRSGSESWYDQTGNLRSSIGYAVYEHGIKQ LQSAFRTILNGSDGSAEGQKMIDKLGKEYSHTYALVVVAGMNYASHVEAIENKDVLASTE LWAKSIVDARLKRAKKAAIEKINKLFS >gi|281306074|gb|ADEF01000013.1| GENE 101 58700 - 59116 192 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|153806864|ref|ZP_01959532.1| ## NR: gi|153806864|ref|ZP_01959532.1| hypothetical protein BACCAC_01139 [Bacteroides caccae ATCC 43185] # 1 138 1 140 140 68 41.0 2e-10 MKSDIDIKNDVWGIINKSDLKKEVTGKLRKTSVRPRDSRCEDIIISILANETKQKQIAYV NVNIYVSDDTRDGQSEEKSSRLRKLCQMSFDLFDNVRGNDFRLSITDSNYECGQRVIESA ATSEHVINNKLLYQIINE >gi|281306074|gb|ADEF01000013.1| GENE 102 59122 - 59637 613 171 aa, chain + ## HITS:1 COG:no KEGG:BT_4434 NR:ns ## KEGG: BT_4434 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 22 142 23 144 153 114 53.0 1e-24 MGKPIGWGKCNIIVKDLDTENSKWTKLGTPKENTTKLTPTKGDKKEAPIEGGENEAVKYS ANKYILEYVLRRLAGRKKPFKDVNGVIAHHYAVFVQPEDITVPGPRMENTVVSLSDEYST EEGGLLTYNHDGLKPDSGNIVKWCTIAKDLSTIKEGATLEDTDVVFIDADE >gi|281306074|gb|ADEF01000013.1| GENE 103 59835 - 60218 362 127 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|154492400|ref|ZP_02032026.1| ## NR: gi|154492400|ref|ZP_02032026.1| hypothetical protein PARMER_02034 [Parabacteroides merdae ATCC 43184] # 1 127 1 130 131 124 51.0 2e-27 MKKYIGTKTVSATPAWRVGGKIYPKDGPVPRSMNREDGYKVVYEDGYKRWLPKDVFEKAY KSADTFKDRLMIEQQELAGRLDKLCSFVNSPKFEEVVTDKEQRELLLRQRKCMGEYLYVL GKRIASL >gi|281306074|gb|ADEF01000013.1| GENE 104 60228 - 60941 364 237 aa, chain + ## HITS:1 COG:no KEGG:BT_4435 NR:ns ## KEGG: BT_4435 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 210 1 210 235 174 39.0 2e-42 MDKDKQLELDIADTIIDRPKGFSVGRRHFYLYPITLGKMYLQQRVVENLELNTELLKLSP YMEVLRLVETKKEDCCLLLAYHTLQTKKDVLNNRIVTIRKNIFLREMENEDIATLTLACL TSDKTTSIVQHLGIDKELQSMSEVAKAKKSNNTYIFGGKSIYGTLIDAACERYKWTFDYV VWEISYTNLQLLLKDKVNSLYLTDEEKKNVHINNTSGIIDGNNMESVMEAIQEMDWK >gi|281306074|gb|ADEF01000013.1| GENE 105 60984 - 65840 3027 1618 aa, chain + ## HITS:1 COG:no KEGG:BDI_0893 NR:ns ## KEGG: BDI_0893 # Name: not_defined # Def: putative viral A-type inclusion protein # Organism: P.distasonis # Pathway: not_defined # 50 830 191 948 1388 162 24.0 8e-38 MAGLKFDITGDNGNMLSALHGVQKGVRQTQQVVEQSGQGIEQMFAGIKSAAVSALGAFSA QQFASKVMNVRGQFQQLEVAFETMLGSAEKANSLMGQLVKTAAVTPFDLQGVAQGAKQLL AYGIQADDVNETLVRLGDIAAGLSIPLNDLVYLYGTTMVQGRMFTMDLRQFQGRGIPIAD ELAKQFGVAKEKVGELVTAGKVGSEEMKKAIISMTSEGGKFAGLMEKQSHTITGQISNIE DAIDNMFNEIGKKSEGVINTGLSSVSYLVENWEKIGKVVLVAASAYGTYKAALLAVYAAH KISLIAQTVSAFFSLTKSVTTAKDAMLLFNIATKANPIGLVLGLIASAVAAFSLFSDSTD KATERQEKFGESADKASDKVETLFAILKTSSATSKVHKDALNELKSIADEYGVSLGKEEN LTQNLIEKKEELIGLIREEAIERQRANDITDASGAYQQNIQKVKDKIKESLSDSFSEMQK NQLINLISEDDIKKLTSAYNDMIKAEKKSVELTGTWNSRFSTQQIEKYNNVISELTNKVG VYGKELGVNEKSINDAKRAVEDNGIALATTRKEYEDTVNATNKAAAAAQNAEMAADGLTE SQRSLSDKTRMAKEDVSSLAKEISKMVETYNNSNINIQISYEELNTPPAWMIGVGKKLSS EQLKNLASLHQSRANRMRNHKEQTGRNLVIKNRQGVHVNEREEQVMAGQYAILAMNKKAE EDKKKRDAEEAAKKAKKNKKKYAAEKRRRDKETKRISEETIGRNKAIKDYEKGVLEQQKE TELNIRQQNIDLKEESYEKEAEQINLNYDRLIAENDKRRKDMIEALKENKVNEWLNKNPK ATKVQQENYRNSLNLTDSDLTATQNAQLAEYERIAKDIKAKAIGDISRSHFATLNSYLKE YGTFEEKKLAITKEYDEKIAKSHTEGERLSLKAEKMKALSDFDLKNMKESMNWEDLFGDL GNLSVRQLEGIKAKLREILQSDGLSVEDYKTTVEQIDRVNSAIIDEQDKQQSFFKFTTDY AKERRKLELDVADALKTQSDLLEKQKTLSNDVRAKKDRIWLMLSTMGVSYRGGIDISKNN DILDSVRDKYGVDSKQYKEVQEALDSLAGSTIKLNETSKKKLDADGKAITAQSRLTKLIG DFTSWLSGFIQGFEKINAKIQELPELLEKLGVDGKSDVGLAVQSFANASNNTLGAMKDFE SGNYIGAVSKGISAIGDFVDGSISLFAGNGNEKTMEEEIARLSSANKELSYSIDKLSEQI IKKDNTNEQSIDAYKKAVKAEEEWQSNQQKTIDNRADEWTNTGYGWTKLGGKKSFNYFAK KASSWVWESMNKALSEQGYTKQITSIGNRDNPNDFWNLSPEEMKAIRTYANEAWRELFSS DGHRNPEELVNEYIERAGSLDKLKDQLNEKLTGFSWDEFRNNYLSVLQDMKSDTNDFAKN INNILSKSILESLVNKKYNQRIKEIQNMVAKAAEDGTITEKEANAIRDANKNLSDDMFRE REQLISKGLLVDEQTKDQSASANGASSITYEQSTSLIALITAGNISRDQIKDIFSTIMAS AGTLTAFSSSTNSAVLEIKNLMIYSNSHLEDILKYTKSIYSEFSDKIDRVNKNLMEIR >gi|281306074|gb|ADEF01000013.1| GENE 106 65842 - 66258 316 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880035|ref|ZP_06288757.1| ## NR: gi|282880035|ref|ZP_06288757.1| hypothetical protein HMPREF9019_0966 [Prevotella timonensis CRIS 5C-B1] # 1 138 1 138 138 275 100.0 5e-73 MLTGQLKINGKDAYTTWGVSMDDTSLSALMTPPAVKPYITNDDRTKHGKEYVKSAIYVDS RDITLQLNLTAKDEVQFITRYASFCDELSKGILDIETSFQKNIVYHCLYQSCSQFSQFMR GIGKFVLKITETNPNNRK >gi|281306074|gb|ADEF01000013.1| GENE 107 66296 - 69403 2036 1035 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880036|ref|ZP_06288758.1| ## NR: gi|282880036|ref|ZP_06288758.1| hypothetical protein HMPREF9019_0967 [Prevotella timonensis CRIS 5C-B1] # 12 1035 1 1024 1024 2087 100.0 0 MVIYDIHGSKLMDAILTEGAVLERELGKTDVVKLSWNGDKKSTLPVGSYIVPFSDGLKYR LLDDYTPSEDSTSVKYEPVFNHPLAILSRIPFLYDTTDQDGNPIKQQEWPYDGLTTNALE YACKAINEALGITDESKKFTYTLCGTVDPTISFSVSSNDILSVLSSMAQACKDNSSEWHL SWEDHTLYFGQIFINLGEKIPLLKVHDNINPATVNSSKEPYYNCFYPQGSSRNMSRKAQV GLGNVATLVRLGLNKNKFPDGCIYVDKDSNVITKQEFVQSGAVKQMVALSFDDVYPHIDL YAYNVRPRYRYLKNKQTNEIEKDANGKNKVYTTWYMRLAYPTTVKDDAKTLVNTTNDIDE QGKQVTHYWYDYELNKKEQVLQGHTLKATFKVNTHATDGKYDALTQSLVGQPNGQDGFEL AYFDKNDAKEIPSNQNDGDSGINIKAGDYQIMFYQNGDIIIPTNQEEGLYPRGNNLPDLT CNIVVLFNIKQGQQEITSAQEELAKRTVKEIERRFKDNNNYTFSSNPVAFEEKNPNLHIG QKVIFNDGQGYELSTRVIKIESKIDFPFIQSITVGNQAVKGAITQLKEDVKSILSGNFSG GGGLNTSQIENVIKNFTLPRFLRKDVADEAKGHITFWKGLTALIKSFFNGIENNGDIRNK GDITNSGNIMTKNLTVTGKATFFELEILKAKAAGGIIIQSAATFKVDDCEETADGYECYQ RAEQDGVKLVQMCEVNDQMMCYGGFNVGVGTNHNVSNHFYWRLVTEAPTTSVRRNIDGEE VECLKIVLSRTDCADNSDVPLVGDETAQIGNRTNTDRQNVIVNSAYKSIDVGLVAPYWAK YVGVNDYKLETHRETYFARNDNQIVGNLRARSSSGEIRPVPVLLGEWKSGKEYGYYDSVT HDGRQWLCIVEPGKRTTEEPGKGDAWMMLVDKGSKGDKGESSCTVNIFTDTPNGNIIRNG QGSVWLFAVVYYGTKEITETLKDWQFSWVIHSGNPEFDKLWNKRHQQCGRKIELSAQEVN NMAQVECLICDNFEL >gi|281306074|gb|ADEF01000013.1| GENE 108 69477 - 70502 952 341 aa, chain + ## HITS:1 COG:no KEGG:L21300 NR:ns ## KEGG: L21300 # Name: pi311 # Def: prophage pi3 protein 11 # Organism: L.lactis # Pathway: not_defined # 4 340 3 373 373 85 24.0 2e-15 MNKILSRGQITIVDLNDAKQISMILQVKNPSQMYNPDTKVYVPNFSTDKNTITPKVYVTG SGQNMVSALTAIEYDINGTKVQAGKSAGGYSVGAISAGAVLTIASNISSNALNINVKATY HDTLTNVDTVLEAQTQVIKSTSAGALLQVVLTQPKGNSFDTSITELTAHAECYRGGVHDT SIQKFQWLKLNFANGTFEDISTGVQTSGGNSTLTVHPDDVLNVQTYKVIATDEGQTAEAI VTFEDRTDPYEVVLHAPKGNVIVNGKGEIDINAEVWQNGVKLEDASAQTPKFTYTWTKYN KAGAQENFAGTSSPTKTGNPLKVLAADVDQKATFVCEVRKA >gi|281306074|gb|ADEF01000013.1| GENE 109 70734 - 73001 1348 755 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880038|ref|ZP_06288760.1| ## NR: gi|282880038|ref|ZP_06288760.1| hypothetical protein HMPREF9019_0969 [Prevotella timonensis CRIS 5C-B1] # 15 755 1 741 741 1479 99.0 0 MNKVLTRGIITIAAVNDGKDGHSLTAKAFIEGSYRNGRTKGVKSYVKVFYDGQEVTDFKA SYRYKGAGYSNWSEPEIKSSDAWCDAQRDGSTLLVEYTVEYKGLKALATGRLDNIQDGMP GKDAVIYKLVPSKEKVLAYFESHSHYKKVMVELKYFIQKTVGDVTTDVRLYDEGLTLRAY PDLGDLQASSGVYGFGPVIRTYDASEETFSVTLLKGNKILDIRTIPITMKPDLVYAFDDK LGEVRRKIRTVDGKVNTFKATINKTSSTVGNLEKEFTQIQQTSKEISMTVNNGTRPNLLW GSDLNLDGVDTTNNAAIEKHLGVGIASTKIDSKEWFEYLKGGGVGGADAIKFKAMKGTSE FAGLFWEFNAGAARNLQLKPNTLYTLSAWVKTEFDKDAQGYSNFVFEAFKKEKDNSRQRV GKLKFKAASSFYEPVNAWTRVSATFTTEELQFGSVAMWVNGTKPATLYICRPKLEEGDTA TPWCAYDGTVEALLAGGFDIKNRKFTATADNFVVKNNKGERTFMVDEKGALRSIDTSGKG CIVLRPEVGYISILDSETGKERVMVSNNGIFCLGVKDNNIVFDTGDERGMYAGLDMGAGM FRVNAFNDEAIGMQLDIIMNGLPYTGNNNLQYSQLYVDGKNNLKINTGEPIVKFLHPNDG YTMKSTDTTIVADTEPYRDAKITLPKNPQVGMEVEIINIGTGFCYLETADNTKIFWDEVK TKETVREHRKISLLYVGGSDDLWIYTTEGYCGNHT >gi|281306074|gb|ADEF01000013.1| GENE 110 73196 - 73462 318 88 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880039|ref|ZP_06288761.1| ## NR: gi|282880039|ref|ZP_06288761.1| hypothetical protein HMPREF9019_0970 [Prevotella timonensis CRIS 5C-B1] # 1 88 1 88 88 164 100.0 2e-39 MQRNTKEWIQYGSAIALLTSGVAMAFLSFFLNGGDLKDSVLWYVSQTLVYAGSIFGVGIY VQSKWGEVKNYVDKRLRDNFDDDENQSK >gi|281306074|gb|ADEF01000013.1| GENE 111 73443 - 73883 438 146 aa, chain + ## HITS:1 COG:STM1028 KEGG:ns NR:ns ## COG: STM1028 COG3772 # Protein_GI_number: 16764388 # Func_class: R General function prediction only # Function: Phage-related lysozyme (muraminidase) # Organism: Salmonella typhimurium LT2 # 3 143 2 145 150 100 47.0 7e-22 MKIRASDTLISKLKEFEGLRLVAYKPTKAERWWTIGYGHSAGDVRAGMRINEEKAEELLR RDLFFVEKFINGIPKVRTQGQFDALVSFAYNVGVGNLKSSTLLKKIMHDAPTVEIQREFM KWVNSGGKQLAGLVKRRKWEAERWGE >gi|281306074|gb|ADEF01000013.1| GENE 112 73805 - 74329 238 174 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880041|ref|ZP_06288763.1| ## NR: gi|282880041|ref|ZP_06288763.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 62 174 1 113 113 183 99.0 4e-45 MGEQRWQTAGWTGEKKKVGSGKVGRMRMKMLSIFLATISLYGCKTVRLVPVPEYHTLYKT RVDTVQRWDSVRDVQWMTVREVDSTQLAALGLQIHGLKNALLIERNKLLQKISNEKTHKV DTVMQRDSIPVPYPVEKPLTKWQLWKMDMGGWAMGVAVLLVILLVVRLFKIRII >gi|281306074|gb|ADEF01000013.1| GENE 113 74475 - 75017 630 180 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880042|ref|ZP_06288764.1| ## NR: gi|282880042|ref|ZP_06288764.1| hypothetical protein HMPREF9019_0973 [Prevotella timonensis CRIS 5C-B1] # 1 180 1 180 180 311 100.0 9e-84 MKKINEIASENGLQVITTTTGMNGYPQSLKKAIIGFENFEQAEKLAEEYHLDIEVFTKRD GWDLWSRGGDSAYDAFERSADDYGENYQQFEPNMSQDDFLQQIGAADFVQGLADEEDGLD KIEDYIKGIRELYDEIATANDDEIVIAEGDTYVETIKVKTMQYSYDTKHYVIGLIDNNED >gi|281306074|gb|ADEF01000013.1| GENE 114 75071 - 75331 256 86 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880043|ref|ZP_06288765.1| ## NR: gi|282880043|ref|ZP_06288765.1| hypothetical protein HMPREF9019_0974 [Prevotella timonensis CRIS 5C-B1] # 1 86 2 87 87 166 100.0 3e-40 MTKKEELVIELYIKRTPITKIVAATGVSSAGVYRILSNFDIPLHSGKKMYQHSVMFDEET EKLLQQANPANISAWVCEQIKNAYGK >gi|281306074|gb|ADEF01000013.1| GENE 115 75411 - 76592 540 393 aa, chain - ## HITS:1 COG:no KEGG:BVU_2806 NR:ns ## KEGG: BVU_2806 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 389 1 389 393 260 37.0 8e-68 MATLSLTVFKAKQLANGKHKIRIAVRHHHETAYIITPYIIDDISQFKNGNVIKRYDADVM NVQLRTLMNKYQKILDDVYNIGALSAKDLKNTILSYHKTDDNITIGKICDNFVKELKEDG RKGYAELIERCGKYFIEFSKGDMPANSITPITVSNFDRFLRNKKKLNQTTIGMYLTRLRV LTNLGKKRYLVKQDINPFQDCIIPQPMERNIDISIEQFRKLKSYSCKSRIEKIAKDLWFL SFYLGGINLIDLMRIDFTVSKQIEYVRTKTKNTKRGDKRIEISIPAEAKSIIDKYVSKSG ILNFGYNFSYGNFNRYIGRTLRKIGKEIGIKRLCYYSARKTFVQYGFELGIPLEVLEYTI GQSMKQNRPIYNYIRIMRKHADEAIAKIIRFTE >gi|281306074|gb|ADEF01000013.1| GENE 116 76574 - 76765 85 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSSPMRVTKHKPFVIKQLQVHTSLHQVIYQLKKRDYFLKFDAKRVSFEYPLILTSIKWQ RFL >gi|281306074|gb|ADEF01000013.1| GENE 117 77131 - 79197 1869 688 aa, chain + ## HITS:1 COG:all4026 KEGG:ns NR:ns ## COG: all4026 COG1629 # Protein_GI_number: 17231518 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Nostoc sp. PCC 7120 # 34 665 196 830 854 221 27.0 3e-57 MLFAILIAMPVMAEEKDTIKVGDDLGEVSVIGFKQERAALSPVSQSSVGNLYIQNNQLDG LRELSGRMANFYMPDYGSRQYSPIYIRGIGSKTSTPSVGVYVDGMPYFDRSVLDMDLFGI SKVEILRGPQGTLFGRNSTAGLINIYTHSPLDYQNTMAKISYGSYNDIQAMAATYQKLSN SFGFSVAGNYHHNDGYFMNTYLNKKADPMDNGTIRIGLAWKPSQRWLMRYSLNLDVIDQG GFPYAIYDAKKDALNEISYDEASGYHRFVLSTGMNWRYEGDKFSFNSQSSFQYSKDKVSM DQDFTKNHILFVSMPQHQNMFSQEFTFRSKNDHWYHWMTGVFAFTQTKNFATAINYFTPK HALRAKGTKDNENEIPVSGLAAYHVSSFDLYKGLSASLGIRYDYETSKVDNHTYWTPENN PSGKSKLLVEYNQKMYSNQITPRFTLKQQFTPNRMVYLTVARGYKPGGFNAAKESEADRS YAPEYTWNYEIGTKLNMLDNRLSLEASAFYVDWKDQQLSVIVPMVGAVIRNIGHSDSKGF EVSLSGQPLKNLLLYANYGYTYVRFLAANTGKKRDYTGNILPMVPRHTVSLNANYSLYQL GMLDRLMFNANLTGMGKIYWHENNEKYQPFYALLNLKVAATKGHFTWELWTKNTTATKYM AYYFVSSQKMGQPGKPFCIGTSLVYTLK >gi|281306074|gb|ADEF01000013.1| GENE 118 79284 - 80519 604 411 aa, chain + ## HITS:1 COG:all4025 KEGG:ns NR:ns ## COG: all4025 COG0477 # Protein_GI_number: 17231517 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Nostoc sp. PCC 7120 # 15 402 10 396 396 161 29.0 2e-39 MSTQNKSHLLGTFFSLYIAQAVPMSFFSTALQVLMREQAFSLTTISLLQLIKVPWILKFL WSPLVDRQCMSVKDYKRWIISSEVVYAVLILGAGLLNLETNIQLIIVLVFLSLIASATQD IATDALAILCTHKEQKSFVNGMQSMGSFGGSLLGSGALLIVLHHYGWNLVTQCLSIFVLL AILPLIMNKKIVLIRPKEKSQRAKWNDFIWFFNQREVYPQIIFLLLYYASIMGLLSVVRP YMVDLGYNMKEIGFLNGIVGISAAMVVSYPASMLIRRFGIERVKILFAVFILIATVYFTM ISFSSPTKPWLIGGIMFLWMCYGMGTVVVYTSSMFIVRQGREGTDFTIQIVITHISGLLM ALISGNIADRLGYHGLFCIEAVIAAVSLLYVIVLFKRSKRSSLPLKNEDTL >gi|281306074|gb|ADEF01000013.1| GENE 119 80516 - 81310 558 264 aa, chain + ## HITS:1 COG:all0287 KEGG:ns NR:ns ## COG: all0287 COG1587 # Protein_GI_number: 17227783 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Nostoc sp. PCC 7120 # 5 260 18 268 276 110 30.0 2e-24 MKPTILITAPQHYSSRLEASFKRYQDQVSVVHIPMVQSTFATNNKQMQELCTHLHEYDFV VCLSRKAIDAMHYYGHNHDDLTQTQFLAIGKDNDYLQDKLGVTPPFIAEESSPLGIAQAL EARGFTKGCRIAALSPAFVDLEEPQTVPVFIKRLKELNIDVQRIDAYVNMASELSERKKA YDLIIDQQISTVVFTSGSEVVAFKEGLEEVYGTDADSVLELIDVACMGPYTAAQARLIGL KVDKIPTKFHSFDDLTAYLIASKP >gi|281306074|gb|ADEF01000013.1| GENE 120 81364 - 81627 248 87 aa, chain - ## HITS:1 COG:SP1264 KEGG:ns NR:ns ## COG: SP1264 COG1808 # Protein_GI_number: 15901124 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 39 81 25 67 347 60 67.0 5e-10 MEKVSLKAYLRQYFDMSENREKEEDVVKDITSGVTFKGANLWILICAVFIASLGLNINST AVIIGAMHISPLMGPILGMGMDPEAHK >gi|281306074|gb|ADEF01000013.1| GENE 121 83547 - 84980 1193 477 aa, chain - ## HITS:1 COG:aq_2015 KEGG:ns NR:ns ## COG: aq_2015 COG1232 # Protein_GI_number: 15607001 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Aquifex aeolicus # 29 477 5 427 436 189 33.0 8e-48 MAENKDNFSVESKPTHEHQPAQEATRHVDVCVIGAGLTGLTTAFLLKRKGKEVVVIEKQP RIGGQIHTQQVGNYIMESGPNTGSVSFPEVAELFEALSKGCSMETACESSKRRWIWKGGR FHDLPAGLIGGLRTPLFTWYDKFRILGEPFRAKGTNPDETVGALAARRLGKSYLDYAVDS FVSGVYAGNPMTLVTRFALPKLYLLEQEHGSFIRGAIAKAKAPKTERDRQATKKVFSARG GLSHLVNALGDAIGATHLITGADGVEINPTEGGYVVKYTTDLGQAHTVYCHQVVTTCGAY ALPALLPFIQQSLMSKISNLFYAPIVQVGVGIKDTQGVSLRAFGGLVPSCEKQQVLGILF PSSCFENRAPLGGATLSFFLGGVRHPDFLSKTDEELTAIVEDALHRMLKLPASVQPDAIR IFRHERAIPQYVASSGDRYAAIEQIQQQYPGLILAGNIRDGIGMAHRIRQAFEVAKQ >gi|281306074|gb|ADEF01000013.1| GENE 122 85281 - 86651 1074 456 aa, chain - ## HITS:1 COG:aq_2124 KEGG:ns NR:ns ## COG: aq_2124 COG0635 # Protein_GI_number: 15607073 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Aquifex aeolicus # 2 456 6 456 456 312 38.0 1e-84 MNQQLLDKYNVPVPRYTSYPPANYFHELTTDQYLSAIEASNHHAHQPLVSFYLHIPFCRH LCHYCGCNSYPMANQDMRKRYVDALHQEIDLIASHLDTQNRQISQIHYGGGSPTALPIAD LKSLNEHLRSLMPTIAHPEIAIECHPGYLAEGDWEALAQCGFNRYSLGIQDFDEHVLKAV NRRPSLLPVEEIMHLLRQQGATVNMDLLFGLPYQTPDSFARAAEQAANLHPDRIVTFSYG HVPWVHKRQLILEKLGLPQDEDKQEMYRRAAEVLHTAGYRSIGMDHFVLPTDELSVALET KQLHRNFQGYCTRRTTGQVYAFGVTAISQLQTAYAQNGRDIEEYIRCIEAGKPYTYRGYE LTTQEQMVREVIEQMMCNYHFSWKEIAACLGCTPAEVKAATNYDEQKLKEMEADGLIELS EDSISMTQIGSPFVRNVVATLDPLMAHTDKKFSKPI >gi|281306074|gb|ADEF01000013.1| GENE 123 87637 - 89928 2124 763 aa, chain - ## HITS:1 COG:L135972 KEGG:ns NR:ns ## COG: L135972 COG3537 # Protein_GI_number: 15673483 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Lactococcus lactis # 36 758 11 715 717 426 33.0 1e-118 MKMLKTCLSVLAFTLAWNVSAADKLEPVDYVSPLVGTLSKHALSTGNTYPAIALPWGMNF WMPQTGKMGDGWAYVYTEDKLRGFKQTHQPSPWINDYGQFAIMPITGKPVFNEDERASWF SHKAEVAKPYYYRVYLADHDIVTEFTPTERAVMFRFTFPENSHSYVVVDALDKGSSIQII PAENKIIGYTTRNSGGVPDNFKNYFVIQFDKPFTYRAAVADGKIDESKTTATVNHAGAII GFKTQRGEKVHARIASSFISPQQAELNLQELGGRSFEEIKQQGRQLWNKVLGRIEVEDNN IDHLRTFYSCLYRSVLFPRSFFEKDATGKIVHYSPYNGQVLPGYMFTDTGFWDTFRCLFP LLNLMYPSMNVKMQEGLVNAYLESGFLPEWASPGHRDCMVGNNSASVVADAYLKGLRGYD AETLWKAVTHGANAVHPTVSSTGRLGFEEYNKMGYVPYDVDIDENVARTLEYAYDDWCIY QFGKALGKSKKELAPYLKHAMNYKNVFDRETNLMRGRNKDGKFQSPFSPLKWGDAFTEGN SWHYTWSVFHDPQGLINLMGGKQTFNLMLDSVFNVPPLFDDSYYGSVIHEIREMQIMNMG NYAHGNQPIQHMIYLYGYSGQPWKTQYWIREVMDKLYNANPDGYCGDEDNGQTSAWYVFS AMGFYPVCPGSNQYVIGTPYFQKMTLHLENEKTLTLQANKCSTANKYIQSLRINGMPTTR NYFTHQELMQGGTIVYDMGNVPNKQRGIQDADAPYSFTTALRR >gi|281306074|gb|ADEF01000013.1| GENE 124 90264 - 93920 2371 1218 aa, chain + ## HITS:1 COG:NMA0631 KEGG:ns NR:ns ## COG: NMA0631 COG3513 # Protein_GI_number: 15793618 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Neisseria meningitidis Z2491 # 5 1083 12 980 1082 119 21.0 5e-26 MNKRILGLDTGTNSLGWAVVDWDEHAQSYELIKYGDVIFQEGVKIEKGIESSKAAERSGY KAIRKQYFRRRLRKIQVLKVLVKYHLCPYLSDDDLRQWHLQKQYPKSDELMLWQRTSDEE GKNPYYDRHRCLHEKLDLTVEADRYTLGRALYHLTQRRGFLSNRLDTSADNKEDGVVKSG ISQLSTEMEEAGCEYLGDYFYKLYDAQGNKVRIRQRYTDRNKHYQHEFDAICEKQELSSE LIEDLQRAIFFQLPLKSQRHGVGRCTFERGKPRCADSHPDYEEFRMLCFVNNIQVKGPHD LELRPLTYEEREKIEPLFFRKSKPNFDFEDIAKALAGKKNYAWIHDKEERAYKFNYRMTQ GVPGCPTIAQLKSIFGDDWKTGIAETYTLIQKKNGSKSLQEMVDDVWNVLYSFSSVEKLK EFAHHKLQLDEESAEKFAKIKLSHSFAALSLKAIRKFLPFLRKGMYYTHASFFANIPTIV GKEIWNKEQNRKYIMENVGELVFNYQPKHREVQGTIEMLIKDFLANNFELPAGATDKLYH PSMIETYPNAQRNEFGILQLGSPRTNAIRNPMAMRSLHILRRVVNQLLKESIIDENTEVH VEYARELNDANKRRAIADRQKEQDKQHKKYGDEIRKLYKEETGKDIEPTQTDVLKFQLWE EQNHHCLYTGEQIGITDFIGSNPKFDIEHTIPQSVGGDSTQMNLTLCDNRFNREVKKAKL PTELANHEEILTRIEPWKNKYEQLVKERDKQRTFAGMDKAVKDIRIQKRHKLQMEIDYWR GKYERFTMTEVPEGFSRRQGTGIGLISRYAGLYLKSLFHQADSRNKSNVYVVKGVATAEF RKMWGLQSEYEKKCRDNHSHHCMDAITIACIGKREYDLMAEYYRMEETFKQGRGSKPKFS KPWATFTEDVLNIYKNLLVVHDTPNNMPKHTKKYVQTSIGKVLAQGDTARGSLHLDTYYG AIERDGEIRYVVRRPLSSFTKPEELENIVDETVKRTIKEAIADKNFKQAIAEPIYMNEEK GILIKKVRCFAKSVKQPINIRQHRDLSKKEYKQQYHVMNENNYLLAIYEGLVKNKVVREF EIVSYIEAAKYYKRSQDRNIFSSIVPTHSTKYGLPLKTKLLMGQLVLMFEENPDEIQVDN TKDLVKRLYKVVGIEKDGRIKFKYHQEARKEGLPIFSTPYKNNDDYAPIFRQSINNINIL VDGIDFTIDILGKVTLKE >gi|281306074|gb|ADEF01000013.1| GENE 125 93927 - 94814 440 295 aa, chain + ## HITS:1 COG:PM1126 KEGG:ns NR:ns ## COG: PM1126 COG1518 # Protein_GI_number: 15602991 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Pasteurella multocida # 4 278 43 317 343 171 36.0 1e-42 MLKRSVVFSHPASLSLRYNQLVITMKDLPDERRTIPIEDIGFLMVDNPMVSISVPLINAL TENNVSVVFCNQKGMPTSMLFNLDNNNTQGETLRNQLSASQSFNKQLWKQIIECKIKNQA QLLEKLGKEGKCLFPYYNNVKSGDSTNREGAAAKLYWTQLFGKDFIRDRTQSGTNALLNY GYTILRAAVTRAIMSAGLFPALGIFHHNRSNAFPLADDMMEPYRPFVDEIVYHLTQNGQT TLTTEVKGILIKLLYCDTYFINVTRPLSVGLTMTMASLVKYYAKEVKKISLPLLK >gi|281306074|gb|ADEF01000013.1| GENE 126 94811 - 95149 274 112 aa, chain + ## HITS:1 COG:Cj1521c KEGG:ns NR:ns ## COG: Cj1521c COG3512 # Protein_GI_number: 15792834 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Campylobacter jejuni # 12 98 7 93 143 71 43.0 3e-13 MSENRLNAYHVMWLFVMFDLPTVTKKDKKEAARFRKELEKDGFTMYQYSIYIRYCGSQES ANVHIKRVKSILTPSGKVSILTVTDKQYSKIINMWGEIKQKAPETPIQLEFF Prediction of potential genes in microbial genomes Time: Sat May 28 06:32:53 2011 Seq name: gi|281306069|gb|ADEF01000014.1| Prevotella timonensis CRIS 5C-B1 contig00066, whole genome shotgun sequence Length of sequence - 5003 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 28 - 87 6.9 1 1 Tu 1 . + CDS 114 - 509 329 ## PRU_0823 hypothetical protein + Term 540 - 584 10.3 - Term 523 - 578 13.9 2 2 Op 1 . - CDS 609 - 905 382 ## PRU_1438 hypothetical protein - Prom 954 - 1013 6.6 - Term 1005 - 1039 1.1 3 2 Op 2 . - CDS 1053 - 2813 1864 ## COG0173 Aspartyl-tRNA synthetase - Prom 3037 - 3096 4.0 4 3 Tu 1 . - CDS 3104 - 4291 864 ## COG1373 Predicted ATPase (AAA+ superfamily) 5 4 Tu 1 . - CDS 4699 - 4767 66 ## - Prom 4933 - 4992 3.0 Predicted protein(s) >gi|281306069|gb|ADEF01000014.1| GENE 1 114 - 509 329 131 aa, chain + ## HITS:1 COG:no KEGG:PRU_0823 NR:ns ## KEGG: PRU_0823 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 21 130 1 108 108 73 39.0 3e-12 MKRIFIVATTVLALMSCHENLEDRCVREAKEYTEKYCPTPVVNSTRTDSVTFDKATKTYQ YFCSFVDELDNPEIVKRNSQKLHSLLIKEIKDNTSIKKLKEANYNFAYIIHSSKNPNKVL YQQTIRVKDYQ >gi|281306069|gb|ADEF01000014.1| GENE 2 609 - 905 382 98 aa, chain - ## HITS:1 COG:no KEGG:PRU_1438 NR:ns ## KEGG: PRU_1438 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 17 98 18 102 102 67 61.0 2e-10 MTEKKVTTAAASKKAAPAKKATACKRTSVKKAALVVNAESVGFRAGDVYQTLASAGKAMS VAEIAKAAKIGTEEVYLGIGWLFKEGKIKDADHLFTLA >gi|281306069|gb|ADEF01000014.1| GENE 3 1053 - 2813 1864 586 aa, chain - ## HITS:1 COG:CAC2269 KEGG:ns NR:ns ## COG: CAC2269 COG0173 # Protein_GI_number: 15895537 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 1 583 8 590 595 605 51.0 1e-172 MYRTNTCGELRLSDVNKEVTLSGWVQRTRKMGGMTFVDLRDRYGITQLVFNEAADAKLCE QANKLGREFCIQVKGTVSERQSKNEKMPTGDIEILVSQLVILSESLTPPFKIEDETDGGD DLRMKYRYLDLRRPTVRKNLELRHRMTILIRNFLDNEQFIEVETPVLIGSTPEGARDFVV PSRMNPGQFYALPQSPQTLKQLLMVSGFDRYFQIAKCFRDEDLRADRQPEFTQIDCEMSF VDQEDVIGLFENLCRHLFKEIRGVELPAKLQQMTWAEAMKRFGSDKPDLRFGMEFVELMD TLKGKADFSVFNEAAYIGGICVPGCANYTRKQLDGLTEFVKRPQVGAKGLVYIKYNEDGS IKSSIDKFYTQEQLLAVKEQMGAKDGDLVLILSGNQPNKTRVQLCALRLEMGERLGLRDK NKFECLWIVDFPLFEWSDEEQRLMATHHPFTMPNPDDIPLLDEHPEKVRAKAYDFVCNGI EVGGGSLRIHDGQLQAKMFEILGFTPEKAMAQFGFLINAFKYGAPPHAGLAFGLDRFVSI MAGLDSIRDCIAFPKNNSGRDVMLDAPNCIDDKQLDELQIKLDLHQ >gi|281306069|gb|ADEF01000014.1| GENE 4 3104 - 4291 864 395 aa, chain - ## HITS:1 COG:FN1715 KEGG:ns NR:ns ## COG: FN1715 COG1373 # Protein_GI_number: 19705036 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Fusobacterium nucleatum # 1 383 27 422 430 300 44.0 4e-81 MRRSGKSYLLFILFKNYLLEHGVKEDYIIGVNLENRLNKSLRDPDVLLQYINSRLSSDGH YYVMLDEVQMVSEFEDVLNSFLSISNVDVFVTGSNAKFLSKDVITEFRGRGDEIHVRPLT FKEVADFRGNYSQELIREYMLYGGLPQVVLEQDINKKVNYLEQQMEHTYLRDIKERYDVR QDSDLAELVDIMASCVGGLTNPPKIADTFKSVKHSSISIDTIRLYLEYMEDAFVLERATR YDIKGRKYIDSPYKYYFEDLGLRNARLGFRQVEPTHIMENMLYNELRAVGMKVDVGQVFT EVKGEDGTRRRKTLEVDFVCNRGYERVYIQSAYAMETEEKRNQELASLRKLRDGFRRIVI VNGLQPTYMNEEGVYIVNIMDFLRDPERLMEKGTQ >gi|281306069|gb|ADEF01000014.1| GENE 5 4699 - 4767 66 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIILITLDLEHYSDFTIRLKVK Prediction of potential genes in microbial genomes Time: Sat May 28 06:33:47 2011 Seq name: gi|281305933|gb|ADEF01000015.1| Prevotella timonensis CRIS 5C-B1 contig00075, whole genome shotgun sequence Length of sequence - 178553 bp Number of predicted genes - 142, with homology - 133 Number of transcription units - 73, operones - 34 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 298 - 354 -0.9 1 1 Tu 1 . - CDS 470 - 2080 1097 ## COG2509 Uncharacterized FAD-dependent dehydrogenases - Prom 2243 - 2302 8.0 + Prom 2243 - 2302 8.8 2 2 Op 1 . + CDS 2444 - 5674 2784 ## BVU_2578 hypothetical protein 3 2 Op 2 . + CDS 5693 - 7300 1461 ## PRU_1875 putative lipoprotein 4 2 Op 3 . + CDS 7328 - 8179 593 ## gi|282880065|ref|ZP_06288785.1| hypothetical protein HMPREF9019_1889 + Term 8235 - 8287 8.1 5 3 Tu 1 . + CDS 8305 - 9990 1144 ## PGN_0561 trypsin like proteinase PrtT + Term 10046 - 10095 9.1 + Prom 11236 - 11295 3.4 6 4 Tu 1 . + CDS 11318 - 13753 2353 ## COG0527 Aspartokinases + Prom 13836 - 13895 4.5 7 5 Op 1 . + CDS 13922 - 14905 857 ## COG0095 Lipoate-protein ligase A 8 5 Op 2 18/0.000 + CDS 14969 - 16051 1051 ## COG0404 Glycine cleavage system T protein (aminomethyltransferase) + Prom 16065 - 16124 5.3 9 5 Op 3 16/0.000 + CDS 16157 - 16537 665 ## COG0509 Glycine cleavage system H protein (lipoate-binding) 10 5 Op 4 12/0.000 + CDS 16545 - 17861 1205 ## COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain 11 5 Op 5 . + CDS 17858 - 19300 1408 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 12 5 Op 6 . + CDS 19287 - 20591 632 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Prom 20670 - 20729 7.2 13 6 Tu 1 . + CDS 20754 - 22808 2135 ## COG0326 Molecular chaperone, HSP90 family + Term 22863 - 22896 2.1 + TRNA 22979 - 23052 54.4 # Arg ACG 0 0 + Prom 23856 - 23915 7.9 14 7 Tu 1 . + CDS 23953 - 24576 424 ## Fjoh_0125 hypothetical protein + Term 24604 - 24652 10.9 - Term 24586 - 24645 15.3 15 8 Op 1 1/0.000 - CDS 24653 - 25306 653 ## COG2860 Predicted membrane protein 16 8 Op 2 . - CDS 25367 - 26350 860 ## COG1052 Lactate dehydrogenase and related dehydrogenases 17 8 Op 3 . - CDS 26368 - 27663 897 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase - Prom 27797 - 27856 11.9 + Prom 27924 - 27983 6.4 18 9 Tu 1 . + CDS 28018 - 28824 991 ## PRU_0831 hypothetical protein + Term 28859 - 28900 7.4 - Term 28976 - 29010 2.1 19 10 Tu 1 . - CDS 29039 - 30841 1908 ## COG1217 Predicted membrane GTPase involved in stress response - Prom 30893 - 30952 4.6 + Prom 31583 - 31642 5.5 20 11 Tu 1 . + CDS 31815 - 32084 362 ## PROTEIN SUPPORTED gi|160883111|ref|ZP_02064114.1| hypothetical protein BACOVA_01079 + Term 32121 - 32163 7.1 - Term 32109 - 32149 7.5 21 12 Op 1 . - CDS 32171 - 32602 199 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 22 12 Op 2 . - CDS 32623 - 33789 839 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 23 12 Op 3 . - CDS 33793 - 34500 648 ## COG0130 Pseudouridine synthase - Prom 34558 - 34617 2.6 24 13 Op 1 . - CDS 34633 - 35484 811 ## COG1968 Uncharacterized bacitracin resistance protein 25 13 Op 2 . - CDS 35500 - 35724 240 ## PRU_1834 hypothetical protein 26 13 Op 3 . - CDS 35800 - 36681 678 ## COG2177 Cell division protein - Prom 36832 - 36891 3.9 + Prom 37073 - 37132 7.5 27 14 Op 1 . + CDS 37216 - 38283 1004 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 28 14 Op 2 16/0.000 + CDS 38292 - 39164 992 ## COG0214 Pyridoxine biosynthesis enzyme 29 14 Op 3 . + CDS 39169 - 39741 381 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis + Term 39772 - 39812 -0.3 - Term 39724 - 39763 4.1 30 15 Op 1 . - CDS 39795 - 40577 881 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 31 15 Op 2 9/0.000 - CDS 40661 - 42052 301 ## PROTEIN SUPPORTED gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 32 15 Op 3 27/0.000 - CDS 42066 - 45263 2680 ## COG0841 Cation/multidrug efflux pump 33 15 Op 4 . - CDS 45340 - 46530 1346 ## COG0845 Membrane-fusion protein - Prom 46647 - 46706 6.9 - Term 47186 - 47226 1.6 34 16 Tu 1 . - CDS 47303 - 48730 1275 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase - Prom 48782 - 48841 4.1 + Prom 48735 - 48794 3.7 35 17 Tu 1 . + CDS 48912 - 49349 353 ## gi|282880096|ref|ZP_06288816.1| putative lipoprotein + Prom 49355 - 49414 2.8 36 18 Op 1 . + CDS 49530 - 50072 583 ## PRU_1858 hypothetical protein 37 18 Op 2 . + CDS 50047 - 51393 1007 ## BVU_0467 hypothetical protein 38 18 Op 3 . + CDS 51397 - 52158 950 ## COG0149 Triosephosphate isomerase + Term 52171 - 52229 11.6 39 19 Op 1 . + CDS 52243 - 52914 464 ## PRU_1861 hypothetical protein 40 19 Op 2 . + CDS 52936 - 53529 538 ## COG0302 GTP cyclohydrolase I 41 19 Op 3 . + CDS 53620 - 54369 598 ## COG0708 Exonuclease III + Term 54410 - 54449 3.4 42 20 Op 1 . - CDS 54443 - 55273 562 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) 43 20 Op 2 . - CDS 55339 - 55845 234 ## BVU_0599 hypothetical protein - Term 55940 - 55991 11.1 44 21 Tu 1 . - CDS 56029 - 57573 1022 ## COG2356 Endonuclease I - Prom 57593 - 57652 5.3 - Term 57746 - 57808 8.9 45 22 Op 1 . - CDS 58034 - 58447 457 ## COG0802 Predicted ATPase or kinase 46 22 Op 2 . - CDS 58461 - 60044 1301 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 47 22 Op 3 . - CDS 60047 - 63418 2469 ## PRU_1900 hypothetical protein 48 22 Op 4 . - CDS 63399 - 64229 705 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 49 22 Op 5 . - CDS 64232 - 64624 341 ## BDI_3147 hypothetical protein 50 22 Op 6 . - CDS 64642 - 65895 813 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 51 22 Op 7 . - CDS 65906 - 67057 971 ## BF0631 hypothetical protein - Prom 67241 - 67300 79.8 + TRNA 67224 - 67299 69.2 # Pro GGG 0 0 + Prom 67226 - 67285 79.0 52 23 Tu 1 . + CDS 67378 - 67563 149 ## + Term 67621 - 67656 -0.9 - Term 67945 - 67987 8.9 53 24 Op 1 . - CDS 67998 - 68312 420 ## COG0526 Thiol-disulfide isomerase and thioredoxins 54 24 Op 2 . - CDS 68388 - 72095 3688 ## COG0587 DNA polymerase III, alpha subunit - Prom 72164 - 72223 6.1 55 25 Op 1 14/0.000 + CDS 72224 - 72916 392 ## COG0688 Phosphatidylserine decarboxylase 56 25 Op 2 . + CDS 72986 - 73741 509 ## COG1183 Phosphatidylserine synthase 57 25 Op 3 . + CDS 73763 - 74053 237 ## gi|282880117|ref|ZP_06288837.1| hypothetical protein HMPREF9019_1943 + Term 74172 - 74219 6.5 - Term 74032 - 74071 1.1 58 26 Op 1 . - CDS 74225 - 74935 809 ## COG0528 Uridylate kinase 59 26 Op 2 . - CDS 74949 - 75701 496 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 60 26 Op 3 . - CDS 75704 - 76078 342 ## COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase - Prom 76099 - 76158 4.1 + Prom 76093 - 76152 4.9 61 27 Tu 1 . + CDS 76176 - 76631 394 ## COG0590 Cytosine/adenosine deaminases + Term 76690 - 76741 5.1 - Term 76678 - 76729 5.1 62 28 Op 1 . - CDS 76782 - 77639 916 ## PRU_1870 putative lipoprotein 63 28 Op 2 . - CDS 77636 - 78337 571 ## COG0313 Predicted methyltransferases - Prom 78392 - 78451 2.9 + Prom 78369 - 78428 7.1 64 29 Tu 1 . + CDS 78557 - 79075 333 ## COG1435 Thymidine kinase + Prom 79238 - 79297 8.0 65 30 Tu 1 . + CDS 79320 - 80255 795 ## COG0628 Predicted permease + Prom 80423 - 80482 5.4 66 31 Tu 1 . + CDS 80571 - 81044 122 ## gi|282878188|ref|ZP_06286984.1| putative lipoprotein 67 32 Tu 1 . - CDS 80990 - 82024 507 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 - Prom 82104 - 82163 6.3 68 33 Tu 1 . - CDS 82600 - 83082 587 ## COG1528 Ferritin-like protein - Prom 83110 - 83169 8.8 + Prom 83123 - 83182 6.8 69 34 Op 1 . + CDS 83353 - 85515 1559 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 70 34 Op 2 . + CDS 85701 - 86636 717 ## COG3568 Metal-dependent hydrolase + Term 86650 - 86720 25.1 - Term 86653 - 86691 3.5 71 35 Op 1 3/0.000 - CDS 86713 - 88440 1559 ## COG1960 Acyl-CoA dehydrogenases 72 35 Op 2 29/0.000 - CDS 88510 - 89538 1329 ## COG2025 Electron transfer flavoprotein, alpha subunit - Prom 89586 - 89645 3.4 - Term 89594 - 89649 2.4 73 35 Op 3 . - CDS 89655 - 90524 993 ## COG2086 Electron transfer flavoprotein, beta subunit - Prom 90583 - 90642 2.5 + Prom 90895 - 90954 4.8 74 36 Tu 1 . + CDS 91086 - 93062 1626 ## COG0358 DNA primase (bacterial type) + Prom 93107 - 93166 3.5 75 37 Tu 1 . + CDS 93208 - 94632 845 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Term 94860 - 94898 2.1 76 38 Tu 1 . - CDS 94948 - 95601 522 ## BDI_3895 hypothetical protein - Prom 95834 - 95893 5.9 + Prom 95568 - 95627 3.2 77 39 Tu 1 . + CDS 95714 - 95878 80 ## 78 40 Op 1 . - CDS 96178 - 96840 219 ## gi|282880137|ref|ZP_06288857.1| conserved hypothetical protein 79 40 Op 2 . - CDS 96877 - 98331 1035 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member - Prom 98352 - 98411 3.8 80 41 Op 1 . + CDS 98518 - 99000 341 ## BVU_1906 hypothetical protein 81 41 Op 2 . + CDS 98981 - 99799 462 ## PRU_1992 hypothetical protein 82 41 Op 3 . + CDS 99799 - 100377 488 ## COG0742 N6-adenine-specific methylase 83 41 Op 4 . + CDS 100438 - 101667 901 ## BVU_0479 hypothetical protein - Term 101767 - 101808 5.1 84 42 Tu 1 . - CDS 101834 - 103981 1751 ## COG0339 Zn-dependent oligopeptidases - Prom 104084 - 104143 4.4 - TRNA 105070 - 105146 94.5 # Met CAT 0 0 + Prom 105164 - 105223 9.4 85 43 Tu 1 . + CDS 105278 - 105676 339 ## BVU_0141 hypothetical protein + Term 105780 - 105824 0.2 + Prom 105794 - 105853 4.0 86 44 Op 1 . + CDS 106002 - 107765 1235 ## PRU_1912 hypothetical protein 87 44 Op 2 . + CDS 107788 - 108999 1200 ## COG0807 GTP cyclohydrolase II + Prom 109005 - 109064 6.7 88 45 Tu 1 . + CDS 109113 - 110306 1174 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Prom 110342 - 110401 4.2 89 46 Op 1 . + CDS 110525 - 111346 675 ## COG0811 Biopolymer transport proteins 90 46 Op 2 . + CDS 111378 - 111998 685 ## PRU_1916 hypothetical protein 91 46 Op 3 . + CDS 112001 - 112639 576 ## PRU_1917 hypothetical protein 92 46 Op 4 . + CDS 112675 - 113511 840 ## PRU_1918 TonB family protein 93 46 Op 5 . + CDS 113513 - 114478 440 ## COG0226 ABC-type phosphate transport system, periplasmic component 94 46 Op 6 . + CDS 114530 - 115948 1400 ## BF3942 TPR repeat-containing protein - Term 116115 - 116168 9.2 95 47 Tu 1 . - CDS 116248 - 116418 129 ## COG2768 Uncharacterized Fe-S center protein - Prom 116536 - 116595 7.6 96 48 Tu 1 . - CDS 117264 - 117401 106 ## - Prom 117427 - 117486 4.4 97 49 Tu 1 . + CDS 118305 - 119054 593 ## PRU_1922 PorT protein 98 50 Op 1 1/0.000 - CDS 119185 - 120030 248 ## PROTEIN SUPPORTED gi|145635642|ref|ZP_01791339.1| 30S ribosomal protein S16 99 50 Op 2 . - CDS 120058 - 120822 519 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 120842 - 120901 6.3 + Prom 121212 - 121271 4.1 100 51 Tu 1 . + CDS 121386 - 121745 507 ## PROTEIN SUPPORTED gi|150002754|ref|YP_001297498.1| 50S ribosomal protein L19 + Term 121770 - 121820 8.5 - Term 121765 - 121801 3.4 101 52 Tu 1 . - CDS 121817 - 122125 280 ## gi|282880160|ref|ZP_06288880.1| conserved hypothetical protein - Prom 122212 - 122271 8.2 102 53 Tu 1 . + CDS 122153 - 122290 76 ## 103 54 Tu 1 . - CDS 122283 - 122402 58 ## - Prom 122422 - 122481 3.0 + Prom 122353 - 122412 5.8 104 55 Op 1 . + CDS 122445 - 123626 1158 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 105 55 Op 2 . + CDS 123711 - 123905 290 ## gi|282880162|ref|ZP_06288882.1| conserved hypothetical protein + Term 123922 - 123973 12.2 106 56 Op 1 . - CDS 123922 - 125082 963 ## COG0739 Membrane proteins related to metalloendopeptidases 107 56 Op 2 . - CDS 125124 - 125975 474 ## COG1496 Uncharacterized conserved protein 108 56 Op 3 . - CDS 125923 - 127089 715 ## PROTEIN SUPPORTED gi|149915191|ref|ZP_01903719.1| 50S ribosomal protein L27 - Prom 127110 - 127169 2.6 - Term 127115 - 127177 9.7 109 57 Op 1 . - CDS 127189 - 127761 600 ## COG0563 Adenylate kinase and related kinases 110 57 Op 2 . - CDS 127758 - 128297 628 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase - Prom 128496 - 128555 3.5 + Prom 128530 - 128589 4.7 111 58 Op 1 . + CDS 128787 - 130310 470 ## PROTEIN SUPPORTED gi|153833204|ref|ZP_01985871.1| ribosomal protein S15 112 58 Op 2 . + CDS 130349 - 131395 962 ## PRU_2866 hypothetical protein + Prom 131410 - 131469 4.8 113 59 Tu 1 . + CDS 131522 - 132532 1115 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 132661 - 132699 3.3 + Prom 132668 - 132727 5.2 114 60 Op 1 . + CDS 132795 - 132908 67 ## 115 60 Op 2 . + CDS 132972 - 134144 816 ## COG1609 Transcriptional regulators + Prom 134995 - 135054 3.4 116 61 Op 1 . + CDS 135078 - 138287 1855 ## Dfer_2245 TonB-dependent receptor 117 61 Op 2 . + CDS 138310 - 139905 1045 ## Cpin_0005 RagB/SusD domain protein 118 61 Op 3 . + CDS 139917 - 140720 374 ## RB11105 hypothetical protein 119 61 Op 4 . + CDS 140730 - 141521 444 ## gi|282880175|ref|ZP_06288895.1| putative lipoprotein + Term 141530 - 141586 11.1 120 62 Tu 1 . + CDS 141590 - 142717 919 ## COG1785 Alkaline phosphatase 121 63 Op 1 . + CDS 142863 - 144476 1170 ## COG1626 Neutral trehalase 122 63 Op 2 . + CDS 144503 - 145342 241 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 123 63 Op 3 . + CDS 145373 - 146827 1217 ## COG1409 Predicted phosphohydrolases - Term 146841 - 146896 8.0 124 64 Tu 1 . - CDS 146929 - 151218 3725 ## Amuc_0216 hypothetical protein - Term 151303 - 151357 15.0 125 65 Tu 1 . - CDS 151383 - 152675 1408 ## gi|282880181|ref|ZP_06288901.1| hypothetical protein HMPREF9019_2009 - Prom 152695 - 152754 6.9 + Prom 152844 - 152903 8.5 126 66 Op 1 . + CDS 152976 - 153173 98 ## 127 66 Op 2 . + CDS 153177 - 153302 90 ## 128 67 Tu 1 . - CDS 153580 - 154782 1087 ## COG0738 Fucose permease - Prom 155007 - 155066 5.9 + Prom 155065 - 155124 4.5 129 68 Op 1 . + CDS 155148 - 157568 1926 ## COG1629 Outer membrane receptor proteins, mostly Fe transport 130 68 Op 2 . + CDS 157573 - 159078 1435 ## gi|282880184|ref|ZP_06288904.1| putative lipoprotein + Prom 159166 - 159225 2.5 131 69 Op 1 . + CDS 159245 - 160702 1031 ## gi|282880185|ref|ZP_06288905.1| hypothetical protein HMPREF9019_2013 132 69 Op 2 . + CDS 160760 - 162145 969 ## gi|282880186|ref|ZP_06288906.1| putative lipoprotein 133 69 Op 3 . + CDS 162205 - 163311 894 ## gi|282880187|ref|ZP_06288907.1| hypothetical protein HMPREF9019_2015 + Prom 163324 - 163383 3.5 134 69 Op 4 . + CDS 163404 - 164396 733 ## COG3291 FOG: PKD repeat - Term 164525 - 164583 -0.6 135 70 Tu 1 . - CDS 164594 - 166375 1669 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 166589 - 166648 3.9 + Prom 166451 - 166510 3.2 136 71 Tu 1 . + CDS 166535 - 166753 88 ## + Term 166932 - 166967 -0.9 - Term 166546 - 166603 10.2 137 72 Op 1 . - CDS 166691 - 168322 1561 ## gi|282880190|ref|ZP_06288910.1| hypothetical protein HMPREF9019_2018 138 72 Op 2 . - CDS 168347 - 169699 1200 ## BF2139 hypothetical protein 139 72 Op 3 . - CDS 169712 - 172963 2843 ## BF2138 hypothetical protein 140 72 Op 4 . - CDS 172975 - 175509 2232 ## BF2194 hypothetical protein - Prom 175592 - 175651 8.2 141 73 Op 1 . - CDS 175757 - 176854 857 ## Coch_1607 hypothetical protein 142 73 Op 2 . - CDS 176926 - 177900 790 ## COG1284 Uncharacterized conserved protein - Prom 177984 - 178043 9.6 Predicted protein(s) >gi|281305933|gb|ADEF01000015.1| GENE 1 470 - 2080 1097 536 aa, chain - ## HITS:1 COG:L195271 KEGG:ns NR:ns ## COG: L195271 COG2509 # Protein_GI_number: 15673161 # Func_class: R General function prediction only # Function: Uncharacterized FAD-dependent dehydrogenases # Organism: Lactococcus lactis # 39 527 37 522 535 334 40.0 2e-91 MIQEYQIRILPHLAASQESIIGFLAKEKGIDARTIKHVRVLKRSIDARQRTVFVNLKVRV FINEEPEEEDFVRTNYPDVSQRPRVVVVGAGPGGLFAALRLVEEGLCPIVLERGKDVRER KKDLAQIAKTQQVDAESNYCFGEGGAGAYSDGKLYTRSKKRGSVDKILNVFCQHGASTAI LADAHPHIGTDKLPKVIENMRHTILKSGGEVHFQTKMTSLQVSPHDSQVVGVEAIDLPTG RQLTFQGPVILATGHSARDVYRYLDKQHIEIEPKALAVGVRLEHPSMLIDQIQYHQKQGR GKYLPAAEYSFVCQAQERGVYSFCMCPGGFVIPAATGPQQIVVNGMSPSNRGTKWSNSGM VVELHPEDVKSHDMLTPMDDEPISDKLIMMQFQEQLERHCWQQGNMKQTAPAQRMADFVN NRLSFDLPSSSYAPGLISSPLHFWMPPFIVKRLQEAFRVFGKRSHGFLTNEAVLIATETR TSSPVRILRHPDSLQHVRMQGLFPCGEGAGYAGGIVSAAIDGERCAEQCAEMLRNA >gi|281305933|gb|ADEF01000015.1| GENE 2 2444 - 5674 2784 1076 aa, chain + ## HITS:1 COG:no KEGG:BVU_2578 NR:ns ## KEGG: BVU_2578 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 16 1076 16 1053 1053 848 45.0 0 MKRRLFLMMSFLLFMIGTAFAQTDVSGTIISKEDGQPIVGATIQVVGSGTGAISDIDGKF KLTLPQGRKTLRISYVGMESQDVTAKSNMRIVMIPVQKSIDEVIVVAYGTAKKSAFTGSA KVLESDDLTKVQSTNPIEAMKGKVAGVQMVSSSGAPGSTSAIRIRGISSINAGNAPLIIL DGAPYDGNLNLINPQEIESQTVLKDAASAALYGARGANGVILITTKNGRKGRSSITVEAK VGANSKQMPLHNYVNNPAGYYELYFNGLYNYAINKLNMSQDQALGWANQNLVDPNPDNSY SLGYNVYNVPEGEWMIGRNLKLNPHATLGRVIENNGKKYMLMPDDWMKESFRTGVRQEYS MTANGSTDKSSFFGSASYLKIDGITPGSDYSRFSSRLKADYQMKSWLKLFGNFSYSHYET NSLRNDGKSNTPTNLFAMAQMAPIYPLYIRDAEGNVLINQNTNLPEVDYGNGAVLGLTRQ FMKDGNPLNDSQINHNGGIGHNATAAGTAEIRFLKDFKFTSSNSALIGEYRGTTTYNPWF GETASQKGHIFKKHDRTWTYNLQQLLNYHHVFDAHDVEVMLGHEYFRSHHEELSADKLKT FSNESVELDQAVQVGQSGSYASDYNTEGWFGRAQYNYEGRYFTSVSYRRDGSSRFHPDHR WGNFWSLGGAWNINQEKWFDSKIVDLLKFKISYGEQGNDRIGAFRYTTTYNIENSNGEVS LTPNSLGNDKITWEKGGNMNTGIEFSLWNGRLNGDIEYFYRTTTDMLSWVKTPGSTGFAG YYNNVGDMRNSGLEIDLNGDIIRTKDITWSANVNFTTYKNKITRLADNRKNSEIDGVRGY NDESYFYGEGLPIYTWRLYKYAGVDQNTGEALYYKKIYKTDDKNQIVKDANGNDIVEKEI TTTNAGEASYYTCGTSLPDAYGGFGTSLNAYGFDLSIDFNYQIGGNVLDGAYISAMNMNR GAQMHADLLNAWTPQNKNTDIPRLQYGDVNANKLSDRFLISGSYLCLQNITLGYTLPNRI TTLLGLEKMRIYAVGDNIWLWSKRQGLDPRQYIDGGAGNASYSPIRTISGGVSITF >gi|281305933|gb|ADEF01000015.1| GENE 3 5693 - 7300 1461 535 aa, chain + ## HITS:1 COG:no KEGG:PRU_1875 NR:ns ## KEGG: PRU_1875 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 3 525 1 549 561 235 33.0 3e-60 MKMKNILKIAPIIGAIASSTLLSGCLQETFPTDVATQKQVQSSANATENLLGAITTQAKS IYSDPYSWGYGAIMHVRDAMTADIATLSYQNWDWFWFWTDCKEIGAPWAVTQFIWEWQYQ YVLTTNNVIGLVDPEKATDFQKGALAIAYANRAMIYLDLARMYEFLPNDKTVGKSDTGKD ITGLTVPIVKAGMDQQQMANNPRAKKEDMVKFIKEDLDQAEKYMKYVTDTKGNTFPNMAC VEGLRARLYMWLEDYPNAKKYARLAIDKSGVPIMTKEDCLDINKGFNDISKWMWGVQYTD QDAGLKSEWANWTCWMSNEVQYGYTAKGATQMIGRSVYDRISDNDWRKLEFKAPEGSPLY DKVPFLNATYKEKLPAYASLKFRPNKGDDKSFKVGQASAYPMMRVEEMYLIEAEAAAHQN LAEGKKLLEQFMKTRNDKYECKAKTQDDLVEEIVFQKRVELWGEGQSFFDIKRLNYSVTR GYPGTNFVPEVRLNSKGRPAWMNFVIVDQEIMSNPILRDQNNPDPSEKYSPWIGE >gi|281305933|gb|ADEF01000015.1| GENE 4 7328 - 8179 593 283 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880065|ref|ZP_06288785.1| ## NR: gi|282880065|ref|ZP_06288785.1| hypothetical protein HMPREF9019_1889 [Prevotella timonensis CRIS 5C-B1] # 1 283 1 283 283 561 100.0 1e-158 MKKTYHTLKAILLFVCVTLCASCVEEYEYEPASLTAGKPETEQAFLLTNSNVIYLENSMS QTLEVNVVRPDKSAAGSIKLVSDNDKFKVPQSIDFKAGEKSKLVKINFDMKPTTSEQVTI KVADENAYNYASTKVNITVNRYTKHSANWQSWFYGYTFEDVEIMECPKDMFTIRGQHFKA EWIDSDLGNITFWKDEKGLLHMKPQYIHRQNWNDAGLKDFWIVGLFGDSEQLWKKADIDA LTKDECGKYHPEDDTFELWFHWYSPDFGWWINNQQAEWIALLD >gi|281305933|gb|ADEF01000015.1| GENE 5 8305 - 9990 1144 561 aa, chain + ## HITS:1 COG:no KEGG:PGN_0561 NR:ns ## KEGG: PGN_0561 # Name: prtT # Def: trypsin like proteinase PrtT # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 73 365 76 385 840 164 32.0 8e-39 MMRLRLFTTFFLTLLLTLSASAKPRTMAQLRAIAARELSVSTTVEDTRGTSISNMETLQQ LSDLIVIGNRHVGFVVLANDDAIEAVVGVSNKPYTNDTNINPAFQWYLRAANAAIATRIA NGQHYSAAIAPAAPLPDHVAPLIKTKWHQEAPFNNDVQKDANGNPYLVGCVAITMTQIMR YYKYPTKGIGSNTYSMNGETLTADFSASPYQWDKMLPIYEKGKYTDEEAKAVSELMRQVG ISVNMDYKPNFSSSYTKSAQNALINNFGYNPNMNRYTRNYYSEQEWMDMVYKELSEQRPI YYSGNDSKGKNGHAFVINGYNAEGKVYVNWGWGGYEDGYFDIGILTPKNSGDYSYYQDMI VGIQPEQQGAWMSHLTLDYGNHLTIKKLSRRAISMGEAKVCNVSSTPVNGTLALVIEGNG QQRDLETKSYQAKDSYWKAISWERILIPADLPDGDYQVYLRFKDDRDANWQVVRSEYGKP NSVMINIANGTFTVKGNRTNYDWVTAIEAPMVSDAEAPVSVYNLQGHKLLQLPAAAFSVN QLPTHGIFIIKQGTKTTKVVR >gi|281305933|gb|ADEF01000015.1| GENE 6 11318 - 13753 2353 811 aa, chain + ## HITS:1 COG:MJ0571 KEGG:ns NR:ns ## COG: MJ0571 COG0527 # Protein_GI_number: 15668751 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Methanococcus jannaschii # 3 455 4 467 473 276 38.0 1e-73 MKVLKFGGTSVGSVESILSLKRIVEREAQRQPVVVVVSALGGITDQLLSTAQLALSGNET WKDSFDNMVERHHQLIDSVITDNIKHSELYHKVDTLFEQLHSIYFGVFLIHDLSHKTEDT IVSYGERLSSHIVATLVENARWIDARTFIKTERKHNKHVLDSTLTQQLVRDAFSHQHTIT LVPGFISQDKDTHETTNLGRGGSDYTASIIAAALDADILEIWTDVNGFMTADPKVIKAAY TIHELSYIEAMELCNFGAKVVYPPTIYPVCVKNIPIQVKNTFDPDGEGTIIKAKIKNDGK PIKGISSIKGTTLINVAGLSMVGVIGVNRRIFTALANHGISVFMVSQASSENSTSIGVRE QDADAAVAVLNDEFAKEIETGAMFPMEAQSGLATIAIVGENMRHLPGIAAKLFETLGRSG ISVIAFAQGSSETNISVVIEAAYLRKALNVLHDSFFLSEYKVLNLFICGIGTVGGKLIEQ IRSQYDELKEHSRLKLNVVGIASSKHAIYNRDGLDLQTYREELQASELSSPQKLCEAVIG MNIFNSVFVDCTASGEIAALYQPLLEHNISVVAANKIAASSPYDEYMRLKQTAVTRGVKF RYETNVGAGLPIIGTINDLRNSGDKILKIEAVLSGTLNFIFNELTADVPFSETVHRAKEE GYSEPDPRIDLSGKDVIRKLVILTREAGYKAEQEEVEKHLFVPDEYFEGSVDEFWKRLPQ LDDDFEKRRRTLEQQGERWRFVASMEHGKMKVGLQAVAQSHPFYNLEGSNNIVLLTTERY KAYPMQIQGYGAGADVTAAGVFANIMSIANI >gi|281305933|gb|ADEF01000015.1| GENE 7 13922 - 14905 857 327 aa, chain + ## HITS:1 COG:BH0683 KEGG:ns NR:ns ## COG: BH0683 COG0095 # Protein_GI_number: 15613246 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Bacillus halodurans # 17 320 16 328 330 170 33.0 4e-42 MIYIDVPEKNRLTSFYLATEEYVARHIADNEDYFFIWQVPPTVMVGRNQLIDNEINLPYC REKGIHLLRRKSGGGCIYVDEGCLLFSYITHNDQVNLVFTQYIDRIVQMLRQLGINAEAG GRNDILINGKKVSGNAFYHVPQWSIVHGTMLYDTNLQNMVASITPSQQKLNSKGVQSVRQ HIALLKDYTTLSIEEVKRQTKEFLCSSALTLTEKDIKGIEEIEQDYLSDEFTYGNNPRYT MTNKQRIENVGELEVLMELKNNVIKHVNIMGDYFLTGDLDNAILKPLQNIPYTKQAIEAA LPEQVNHIIRNLNKAQLVNLIVEPPKQ >gi|281305933|gb|ADEF01000015.1| GENE 8 14969 - 16051 1051 360 aa, chain + ## HITS:1 COG:BH2816 KEGG:ns NR:ns ## COG: BH2816 COG0404 # Protein_GI_number: 15615379 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Bacillus halodurans # 2 359 3 363 365 327 46.0 2e-89 MENKRTCLHDRHVALGALMQPFGGYDMPIQYSSIIEEHNAVRQHCGVFDVSHMGEVYITG KDAEKYVNYIFTNDVTNAPLNSIFYGMMLYPDGGTVDDLLVYKMGENEFFLVINAANTDK DVEWIRQHAEGYDVTIDHCSDYYSQLAIQGPEAESVVEEVLHLSCKDLAFYEAETIDVNG EQIIVSRTGYTGEDGFEIYGSQAYIVRAWDALMESKRCTPCGLGCRDTLRFEAGLPLYGM ELSKDITPVMSGLSMFCKLDKPEFIGKEAIAKQKEEKPKQKVIGLELEGKAIPRHGYPVM KDGQQVGIITTGYHSISLDKSLAFALVDLEHSKLGTELEVQIRKKTFPCVVVKKRFLNKH >gi|281305933|gb|ADEF01000015.1| GENE 9 16157 - 16537 665 126 aa, chain + ## HITS:1 COG:SPBP19A11.01 KEGG:ns NR:ns ## COG: SPBP19A11.01 COG0509 # Protein_GI_number: 19112961 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Schizosaccharomyces pombe # 9 126 46 164 169 119 49.0 2e-27 MAKVIEGLYYSESHEYVRVEGNIGYVGITDYAQQALGNIVYVDLPEVDDEIEAGDDFGAV ESVKAASDLESPVSGTVVEVNEELEDTPEKINEDAFETWIMKLELSDKSELESLMDAKAY EEFCKK >gi|281305933|gb|ADEF01000015.1| GENE 10 16545 - 17861 1205 438 aa, chain + ## HITS:1 COG:lin1386 KEGG:ns NR:ns ## COG: lin1386 COG0403 # Protein_GI_number: 16800454 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain # Organism: Listeria innocua # 3 434 4 441 448 425 48.0 1e-118 MNYKFFPHTEKNVSDMLDKIGVKSLEDLFKEIPEEVRFRGQYDIPGAKSEIEIRQFFNQL GAKNQQLTCFAGAGVYDHYTPSAVPSLVSRSEFLTSYTPYQAEVSQGTLHYIFEFQSMMA ELTGMDVSNASMYDGSTATAEAVLMAKANHKKANKVLISETVDPKILSVIKTYAHFQQID IEMIAEREGITDQEDLAQKLAEGGVAGVVVQYPNYYGIVEDYTGVADKCHEQKALFIMNS NPSDLALLKTPGELGADIAVGEAQSLGIPMGWGGPYVGYMCCTDKLVRKMPGRIVGKTID EEGQRVFVLTLQAREQHIRRQKATSNICSNQSLMALWATIYLSLMGKEGLKEAAQLSYDG AHYLCEQLLKTGHFTLAYDQPFFNEFCVKYDGNLQELQQRFIENGIFGGIQVGDDMLMLA VTEKRTKEEIDQLIELVP >gi|281305933|gb|ADEF01000015.1| GENE 11 17858 - 19300 1408 480 aa, chain + ## HITS:1 COG:lin1387 KEGG:ns NR:ns ## COG: lin1387 COG1003 # Protein_GI_number: 16800455 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Listeria innocua # 1 474 1 486 488 515 55.0 1e-146 MNHQLYHNLIFELSHPGRRGYTLPKNEFGRHEIPATLKRTVDAELPECDELTVVRHYTNH SENNFGVDNGFYPLGSCTMKYNPTINEEIAAHPAFVNLHPLQPAETVQGAKEVYENLQQA LSALTGLSRFTLNPCAGAHGELTGLMIISAYHQANNDTKRTKIIVPDSAHGTNPASAAVC GLEVVEVKSTADGLVDVEHLKTLLGDDIAGMMMTNPNTLGLFETHIPEITKLIHDCGGLM YYDGANLNPLLGECRPGDMGFDVMHINLHKTFSTPHGGGGPGSGPVGVCEKLVDFLPTNN CATNAKGHFTITVHPYHGHFLTYLRAYTYILTLGKENIKMVGPYATLNANYIKECLKDVY KLPIDTICKHEFVFDGLMDKSTGVTTMDVAKRLLDHGFHAPTIYFPLLFHEAMMIEPTEN ESKETLDAFIEVMRKIADEAKNDPEIVKSAPQETPIKRVNDVEAAKHPILTFKQLIDDNN >gi|281305933|gb|ADEF01000015.1| GENE 12 19287 - 20591 632 434 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 430 1 446 458 248 31 2e-64 MTTTDLIIIGSGPGGYRAADYAAKNGLQVIIFEALEAGGTCLNCGCIPTKCLAHDASKEE KPAFEQVMARKNEAIQQLKAGVETLLSQPNITLVHAKASFKDAKTIVANGEEYAAKYVII ASGSQAKVPPIEGIVYNPHGNSNVLTSTELLSIDHIPEKLCIVGAGVIGMEFASAFAQFG SQVTVVEFMKECLPTFDSDIAKRLRKCLAKTDIQFYLQAAVKKVENGKIYFEQKGKEQCV EADTILIATGRAANIEGLNLDAAGIAYDRKGILVNDNMETSVSGIYAIGDVNGRQMLAHA ATFQGMRAINHILGKDDHIRFDIMPAAVFTYPEAACVGKTEDACKAENIAYKTKKGYYRA NGRALSIEETEGMVKLITDEEDKVIGCHVYGAHAAELVQEVSALMNLNIKLNQLKDIIHT HPTLGEILQDIAIG >gi|281305933|gb|ADEF01000015.1| GENE 13 20754 - 22808 2135 684 aa, chain + ## HITS:1 COG:alr2323 KEGG:ns NR:ns ## COG: alr2323 COG0326 # Protein_GI_number: 17229815 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone, HSP90 family # Organism: Nostoc sp. PCC 7120 # 1 578 2 596 658 452 41.0 1e-127 MQKGNIGVTTENIFPVIKKFLYSDHEIFLRELVSNAVDATQKLKTLSKQGDFKGEEGDLT IHINLDKEKGTLTISDRGIGMNAEEIDKYINQIAFSGVNDFMEKYKENANGIIGHFGLGF YSAFMVSKKVEIITKSYRENEKAVKWSCDGSPEYTIEETEKADRGSDIVLFIDDDCKEFL EEQRIQTLLNKYCKFLPVSIAFGKKTEWKDGKQVETAEDNIINDTEPLWTKAPSTLKDED YKNFYRTLYPMQDEPLFWIHLNVDYPFNLTGILYFPKVKSNIELQPNKIQLYSNQVFVTD QVEGIVPQFLTLLHGVIDSPDIPLNVSRSYLQSDANVKKISTYITKKVADRLQSIFKEDR KNYEEKWDDLKIFINYGMLSQEDFYDRAKDFALFKDVDGKYFTFDEYRTLIKDNQTDKDG QLIYLYATDKDEQYTYIESAKNKGYSVLLFDGQLDVATVSMFEQKFEKSRFSRVDGDIID RIIVKEETKESKLDKNDRDNLSQVFKSQLPKINQAEFNVEVQALGESAMPLIITQSEYMR RMKEMSKYQAGMGFYGSMPDMFTLVLNSDHKLIQNVLDNCSKTTADALKPIESEIKGQEA RLAALHQSQQKKKPEEITQEEKQDVENTQKAIDEQKQKKADIIANAAKDNKIVHQLIDLA LLQNGMLKGAGLDKFLKRSIDLIR >gi|281305933|gb|ADEF01000015.1| GENE 14 23953 - 24576 424 207 aa, chain + ## HITS:1 COG:no KEGG:Fjoh_0125 NR:ns ## KEGG: Fjoh_0125 # Name: not_defined # Def: hypothetical protein # Organism: F.johnsoniae # Pathway: not_defined # 1 204 1 194 194 70 29.0 4e-11 MKKFFIIILGVVACCNTSLAQSTFKYKSERNPWDTYIGAKGGAMYCKLTNIKNSPKITGF GGLFAESFLTKHFSVQPEFMFVHQGANSVKPFKKDAPTEKFNYQFNFIYIDFLLKQYIGN HFSIYSGFHTGKAISMKCNGKTIKSELNTNDFAIPVGASVTWKNLSLDARYNIPIKKIAE TTKAKELLGPAKNNSIMVSLGYQFKIF >gi|281305933|gb|ADEF01000015.1| GENE 15 24653 - 25306 653 217 aa, chain - ## HITS:1 COG:VC2382 KEGG:ns NR:ns ## COG: VC2382 COG2860 # Protein_GI_number: 15642379 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Vibrio cholerae # 16 210 37 233 239 124 39.0 1e-28 MYSPELFFRRPEFIHSLQQVIEFLGTFAFAISGIRHAAAKKFDWFGGFVCGIAVAIGGGT IRDVMLGVTPFWMTSSIYMICTIFAQVFVIVFSKSLKRLDNTWFAFDTLGLALFTIAGMQ KTLACGFPFWIAIIMGCMTGCAGGVIRDVLLNNIPVIFHKEIYALASIVGGVTYWVMYSL GIDVSVTVVTVFSVVCVIRYLAVRFHISLPQLPTEDE >gi|281305933|gb|ADEF01000015.1| GENE 16 25367 - 26350 860 327 aa, chain - ## HITS:1 COG:CAC2945 KEGG:ns NR:ns ## COG: CAC2945 COG1052 # Protein_GI_number: 15896198 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Clostridium acetobutylicum # 12 327 3 324 324 319 49.0 5e-87 MDSKQQQRRYNIVILDGHCANPGDLSWEELKEFGQLKVYDRTSQEQVVERSIDADILLVN KTKITANELQQLPQLKYIGVLATGFNHIDIEAAHKQNVVVSNIPSYSTYSVAQMVFASIF AISNRVEHYAQQTREGKWTQNPDFCYWDTPLIEVAGKTLGIVGLGHIGTKVAHIAREFGM EVYAFTSKNAVDLPEGIQKTTLDGLLSVSDILTLHCPLTPETRELINAESLKKMKKGAIL INTGRGPLVNEADVAAALQSGKLAAYGADVMCQEPPAADNPLLQQPNAFITPHIAWATQE ARKRLVNIAINNVRAFVQGEPINVVNK >gi|281305933|gb|ADEF01000015.1| GENE 17 26368 - 27663 897 431 aa, chain - ## HITS:1 COG:CAC0326 KEGG:ns NR:ns ## COG: CAC0326 COG2256 # Protein_GI_number: 15893618 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Clostridium acetobutylicum # 4 416 16 430 443 405 49.0 1e-113 MSEPLAERMRPRTLDEYVGQQHLVGKDAVLRKMIESGHVSSFILWGPPGVGKTTLAQIVA NKLETPFYTLSAVTSGVKDVRQVIERAKSNHFFQTASPILFIDEIHRFSKSQQDSLLGAV ERGIVTLIGATTENPSFEVIRPLLSRCQLYLLKPLGKEDLLKLLHRAVNEDVILKNRNIE LQETGALLRYSGGDARKLLNILELVVSAAETEKVVVTDQIVEQQLQQNPLAYDKGGEMHY DIISAFIKSIRGSDPDAALYWMARMIEGGEDPQFIARRLVISAAEDIGLANPNALLLANA AFDAVMKIGWPEGRIPLAEAVVYLATSPKSNSAYLGIDKALSIVRETGNLPVPLPLRNAP TQLMKDLGYHDGYLYSHDYPGHFVQQQYLPDALQHHRIWHGQHSPAEEKLYQWMLQCWGD RYKDASTSENK >gi|281305933|gb|ADEF01000015.1| GENE 18 28018 - 28824 991 268 aa, chain + ## HITS:1 COG:no KEGG:PRU_0831 NR:ns ## KEGG: PRU_0831 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 28 267 1 238 239 203 54.0 5e-51 MKQKDALSLKTLTKSSVWDIQENDVFRLWEAAEKDADLKDNMRHYLDVIRSAFEIEEVKI DKPVIIKKYEERGFKVKALRIDGANKQKYAIKKKAILRVTDLSYENIRHITASKLLEVLD RNFGGGWDSLSQSIKDIIESGFDISTTTLPKNRLHNAGGMYEKKVNDGFEVLEIAKGAWV EAIFAKAKPEMEKKSSKLSSAKSDSDDEFDFNEKKSLDEGKDIEDNEEEDDDTFDEDKLT EESYRTTFDSEPEDLDLEAEDVADDEEF >gi|281305933|gb|ADEF01000015.1| GENE 19 29039 - 30841 1908 600 aa, chain - ## HITS:1 COG:DR1198 KEGG:ns NR:ns ## COG: DR1198 COG1217 # Protein_GI_number: 15806217 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Deinococcus radiodurans # 3 595 2 593 593 664 55.0 0 MQDIRNIAIIAHVDHGKTTLVDKMMLAGKLFRDGQDNSGQVLDSNDLERERGITILSKNV SINWKGVKINIIDTPGHSDFGGEVERVLNMADGCILLVDAFEGPMPQTRFVLQKALEIGL KPIVVVNKVDKPNCRPDEVYEMVFDLMFSLNATEDQLDFPVVYGSAKNGWMSEDWKQPTD NIEYLLDKIVEVIPAPKQLEGTPQMLITSLDYSNYTGRIAVGRVHRGVLTGGMNVTICHR DGTQERTKIKELHTFEGMSHVKTDHVDSGDICAVIGLEKFEIGDTICDFENPEPLPPIAI DEPTMSMLFTINDSPFFGKEGKYVTSRHINDRLNKELEKNLALRVRPFEDATDKWIVSGR GVLHLSVLVETMRREGYELQVGQPQVIYKEIEGKCYEPIEELTINVPEEFSSKMIDMVTR RKGEMTSMESQGGRTNIEFDIPSRGIMGLRTNVLTASQGEAIMAHRFKEYQPFKGEITRR VNGSMIAMETGTAYAYSIDKLQDRGKFFIDPGEEVYAGQVVGEHVHDNDLVINVTKAKQL TNVRASGSDDKARVIPKVEMSLEECLEYIKADELLEVTPKSMRMRKTTLDHTERKRLNKD >gi|281305933|gb|ADEF01000015.1| GENE 20 31815 - 32084 362 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|160883111|ref|ZP_02064114.1| hypothetical protein BACOVA_01079 [Bacteroides ovatus ATCC 8483] # 1 89 1 89 89 144 77 3e-33 MYLDKAKKEEIFGKYGKSNSDTGSPESQIALFSYRISHLTEHLKKNRKDHNTARSLTMLV GKRRALLDYLYDNDIERYRSIIKALGLRR >gi|281305933|gb|ADEF01000015.1| GENE 21 32171 - 32602 199 143 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 8 136 123 248 278 81 32 3e-14 MSTEHIVYLGLGSNLGRREEAIQQAIEQIKLSIGTVDRCSSLYETKPWGFSSDHLFMNAC IRCRTFLSPEEVLEATQKIETAMGRTEKSYNGVYEDRVIDIDILLYDNLHIHTAALTIPH PFMHEREFVMKPLLEILDESDVI >gi|281305933|gb|ADEF01000015.1| GENE 22 32623 - 33789 839 388 aa, chain - ## HITS:1 COG:SA1466 KEGG:ns NR:ns ## COG: SA1466 COG0809 # Protein_GI_number: 15927220 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Staphylococcus aureus N315 # 1 386 1 341 341 244 35.0 2e-64 MKLSQFKFNLPEELIALYPHSVYHEIKNAHGKKEISRMTRRDESRLMVLHRKSQTIDMFQ KDKKGKDIKGQYLEFRHVLDYFDEGDTFIFNDTKVFPARLYGTKEKTDAKIEVFLLRELN QEMRLWDVLVEPARKIRIGNKLFFDESGTMVAEVIDNTTSRGRTLRFLYDCPHDEFKHEL FALGETPLPRYIINRREVPHADAHDQEDYQTIFAKHEGAVRAPSTGLHFSREMLKRMEIK GIHDTYITLHCSLSAFNSIEVEDLTKHKMDSEQMKIDAKVCEIVNRTKQEGHHVCAVGTS VVKATETAVGTDGLLKEYDGWTSKFIFPPYDFGLADTMIANFYHSMSPLLMETAAFGGYE LVMEAYDLAVKNGYKFGCYGDSMLILND >gi|281305933|gb|ADEF01000015.1| GENE 23 33793 - 34500 648 235 aa, chain - ## HITS:1 COG:MT2862.1 KEGG:ns NR:ns ## COG: MT2862.1 COG0130 # Protein_GI_number: 15842331 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Mycobacterium tuberculosis CDC1551 # 8 224 8 220 298 173 43.0 3e-43 MNFYKGEIFAIDKPYGMTSFGALAHVRYVISRKLGIKRIKIGHAGTLDPLATGVLVLCTG KATKQIEQLQAHTKEYVCTIQLGATTASYDCEHPVNATYPTEHITLERIEQVLKLFVGEI QQTPPTYSACKVAGERAYNLRRAGEEVALQAKTVRIDEIELIHFDSNTMQLQLRIVCGKG TYIRALARDLGRTLDSGAYLTQLRRTRVGALTIENSINFDHFKEWLNEQEIDEGH >gi|281305933|gb|ADEF01000015.1| GENE 24 34633 - 35484 811 283 aa, chain - ## HITS:1 COG:aq_2195 KEGG:ns NR:ns ## COG: aq_2195 COG1968 # Protein_GI_number: 15607126 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Aquifex aeolicus # 1 266 1 247 256 184 44.0 2e-46 MSLLETIILAIVEGLTEFLPVSSTGHMIITRDLLGMQADDPFINAFIVIIQFGAILSVVT LYWKRFFRLDNTPVPEGTPAVKAFIHRWNFYWKLLVAFIPAAVIGLLANHLIEKMLGSVI VVAVMLVVGGIFMLFCDRIFNHGQESTSLTDKKAFMIGVFQCIAMIPGVSRSMATIVGGM AQGLTRKRAAEFSFFLAVPTMFAATCLDVFKLIKNGGVDALSSHVPTLLLGSAVAFVVAL LAMKWFVNFLTKYGFKVFGVYRIIVGGFILIWLMMGHSLAMVD >gi|281305933|gb|ADEF01000015.1| GENE 25 35500 - 35724 240 74 aa, chain - ## HITS:1 COG:no KEGG:PRU_1834 NR:ns ## KEGG: PRU_1834 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 74 1 74 74 103 72.0 3e-21 MDKRNFAFDKVNFMLLAIGVVVVIIGFLLMSGSGSTETAYNPDIFSVRRIKVAPVVCFLG FVSIIFAIIRKPKD >gi|281305933|gb|ADEF01000015.1| GENE 26 35800 - 36681 678 293 aa, chain - ## HITS:1 COG:BH3601 KEGG:ns NR:ns ## COG: BH3601 COG2177 # Protein_GI_number: 15616163 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division protein # Organism: Bacillus halodurans # 3 241 11 248 298 87 25.0 3e-17 MGKKQNKTSNHHGLQAITLCISTALVLILVGLVVFSTLTGRNLSSYVKENLVVQLILENE MTNSEAQRMCAVIQKRPYIKQLEYISKEQALKEITSAMGSDPSEFTDGENPCPASIEVTL KSVYANNDSLKWIVSEFEKYPQINQINYQKELVDSVNRNLAKIGLVMLVLALLLTFVSFS LINNTVRLDIYARRFSIHTMKLVGASWGFIRRPFVSRAVWTGLIAGLIANLVLAGCIYAL YLSEPGILTVVTWRDMVITGAAVFLFGLVITAICAHISVNKFLRMKAGDLYKI >gi|281305933|gb|ADEF01000015.1| GENE 27 37216 - 38283 1004 355 aa, chain + ## HITS:1 COG:STM2146 KEGG:ns NR:ns ## COG: STM2146 COG0351 # Protein_GI_number: 16765475 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Salmonella typhimurium LT2 # 4 248 3 251 266 163 35.0 4e-40 MKNRHTILTITGSDGTGGAGVQADIKTITALGGYAVSVITSITIQNTLGIQSFYDIPADI VAGQLTALIDDLEPAVIKIGMVRNSKTLDAIIEMLHQHHTSTIIYDPIVTSSQGEPLMTP DMIHAVKDRLFPLCSLVIMKQEDAAVFINSTEVTKETMKAGMTQFLSLGCKGVMLHSGSM NDTLIWRSGEQINQHEFPTLNLTNSHGLGSSLSSAIAYYLSVSTDIHEAVCDGKSYIQQQ LSHFGALKGRSSELYNEFIQAIELHCTTNNDVQFYAHRLGVSSRYLAQVTKRIGQKTPKS LIDEHLLTKSKLLLDTTSKTVQEIAYALGFHSQSHFSKFFKKAEGITPSIYRINK >gi|281305933|gb|ADEF01000015.1| GENE 28 38292 - 39164 992 290 aa, chain + ## HITS:1 COG:SP1468 KEGG:ns NR:ns ## COG: SP1468 COG0214 # Protein_GI_number: 15901318 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Streptococcus pneumoniae TIGR4 # 1 290 1 291 291 424 82.0 1e-118 MTERQILNRNLAQMLKGGVIMDVTTPEQAHIAEDAGACAVMALERIPADIRAAGGVSRMS DPHMIKSIQEAVSIPVMAKCRIGHFAEAQILQAIEIDYIDESEVLSPADNVYHIDKTQFE VPFVCGAKNLGEALRRIAEGATMIRTKGEPGTGDVVQAVTHMRMMQSEMRRIKAMAEDEL FEAAKQLQVPYELIKYVHENGKLPVVNFAAGGVATPADAALMMQLGAEGVFVGSGIFKSG DPVKRAAAIVQAVTNYNDPKRLAELSENLGEAMVGINEHEIEVLMAERGK >gi|281305933|gb|ADEF01000015.1| GENE 29 39169 - 39741 381 190 aa, chain + ## HITS:1 COG:SP1467 KEGG:ns NR:ns ## COG: SP1467 COG0311 # Protein_GI_number: 15901317 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Streptococcus pneumoniae TIGR4 # 1 185 1 187 193 213 57.0 1e-55 MRIAVLALQGAFAEHQQMLHSLGVETFQVRNKCDWEKPKDGLILPGGESTTMTKLLNELD LLLPIQEEISQGLPVFGTCAGLIMLARKENGKPSNRLSTMDIDVCRNAYGRQLGSFHTEE AFKGIEGTIPMTFIRAPYINEVFGDAEILATVDGNIVAARQHHQMVTAFHPELDNDTRVH AYFLNSIPKR >gi|281305933|gb|ADEF01000015.1| GENE 30 39795 - 40577 881 260 aa, chain - ## HITS:1 COG:PM1996 KEGG:ns NR:ns ## COG: PM1996 COG1043 # Protein_GI_number: 15603861 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Pasteurella multocida # 3 257 6 261 262 147 32.0 1e-35 MASDISEKAQIAAGAKIGNNCKIYPFAYIEDDVVIGDNCVVYPFVSIMHGTRMGNDNQVY QGSVLGAVPQDFEFKGDDTELSIGDHNIIRENVVINRATHQGGQTIIGHENFLMEGSHIS HDTKMGNQCVLGYGTKISGNCEIGNGVIFSSSVIESENTRIGDYAMIQAGTTLYQDVPPY IIAGGIPAKYAGLNSMMLQSYGISEKVQKHIANAYRLVFHGQTSVFDAVLQVQEQVPNGA EIDEIVRFIQATKAGIIGKL >gi|281305933|gb|ADEF01000015.1| GENE 31 40661 - 42052 301 463 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157165073|ref|YP_001466086.1| 30S ribosomal protein S12 [Campylobacter concisus 13826] # 60 461 45 455 460 120 27 4e-26 MKIQNILLIALSAMSLTGCKSLYGVYERPAVKTEGLVRDVQSPTDTLVVTDTLSFGYMPW RQVFTDVQLQKHIERALANNLDLLNAAQNVKMAEAQLKAAKLSFLPSFTFAPQGTIASWD GGSAIKTYQLPIAASWNVDLFGNFLSQKRSSQVTLLASQDYQKLVRINIISGVANLYYTL LMLDRQLAIVDDMHGLTKETREKMKVLMDLGRGIRSTGVQSAEANYYAVEAKRADLLRQI RETENALSLLMGQPAQSIVRGKLENQALPQRFSTGIAVQLLNNRPDVHAAEMQLAQCFYN VQTARSRFYPSLTISPTGVFTNSMGGMEVNPGKWLLSAVGSLVQPIFQQGKIVAGLRVAN AQYEKAYNTWQNSILKAGNEVSNALVLYHSSDEKSKIEAKQIEVLQKNVEDTKLLLHQSN STYLEVIIAQQALLNAQTAKIRDDFNKMQAIVNLYQALGGGVQ >gi|281305933|gb|ADEF01000015.1| GENE 32 42066 - 45263 2680 1065 aa, chain - ## HITS:1 COG:BMEI1629 KEGG:ns NR:ns ## COG: BMEI1629 COG0841 # Protein_GI_number: 17987912 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Brucella melitensis # 6 1042 5 1036 1051 770 41.0 0 MTLTRFIKRPVLSTVISVVIVILGFIGLATLPIEQYPDIAPPTISVWTTYIGADAETVKN SVLAPLEESINGVENMEYMTSSATNAGSAQITIYFRQGTNPDMCAVNVQNRVSQAQGLLP AEVNRVGVTVSKRQTSQVIMYTLTSEDGKYDDRFLTNYNNINIVPAIKRIQGVGDVQSPG MKTYSMRIWLKPDVMKQYGLIPTDIAGALAEQNIEAAPGSFGEQSDMAYEYVMRYKGRLK TAEEFGNIILHSTQTGQTLKLKDVAKIELGGLTYAVSMRNNNNPSSMGMVQQIAGSNANV IAKAVKEELDKQAKNFPPGMKYKINYDVTEFLYASIEEVVKTLVITLLLVFLVVYIFLQD FRSTIIPMIAVPVSLIGAFFFLKMFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLD LGYKSTMTASVDAMSEIAGAIISITLVMAAVFVPVSFIGGTSGTFYREFGVTMAVSIFIS ALNALTLSPALCAIFLKPKNEDGTEREMSRIDRFHTSFNTSYDKVLGKYKNRVEKLVRKP ILTGVFVLVGAIALFLTMKTTKTGLVPDEDTGTLFCTVSMPPATSAVRTQEVIDQIDAML ASNPAIQSREQLQGFNFIAGQGSDQATFIIKLKPFKDRNMGQSAMAVLGMIYKQTAQIKD AQILAFAPPMIPGFSLSNGVSLVLQDKTGGDLSKFFDITKQYLAELNKRPEIQMAMTSYN PNYPQYMIDVDVAKCKQVGISPATVLSTLQGYYGGMYVSNFNAYGKLYRVMIQGDVDSRA RPEGMNDIFVRTPAGMAPINGFCSIKRVYGPSNVNRFNMFTSINATVTVNDGYSSGEAIE AIKEVAATTLPQGYGYDFSGLSRSENSSSNSTVMIFGLCLLFVYLILAAQYESYLLPFAV ILSIPFGLAGAFLFTQLFGHNNDIYMQISLIMLIGLLAKNAILIVQFALERRQTGMAITW ASILGAGARLRPILMTSLAMVIGLLPMMFAMGVGKNGNQTLGAAAVGGMLIGTFCQLFVV PVLFVIFQALQEKLKPLKFDDEENLEAAAELRQYARKPLPKQVEA >gi|281305933|gb|ADEF01000015.1| GENE 33 45340 - 46530 1346 396 aa, chain - ## HITS:1 COG:mll6731 KEGG:ns NR:ns ## COG: mll6731 COG0845 # Protein_GI_number: 13475614 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Mesorhizobium loti # 10 365 23 392 402 151 29.0 2e-36 MRRKNVFLLAAFAVLLAACGGKPNLKFGDNEFPVQTVESTGSSTQTTYPAVIKGIQDVEI RPKVSGFITKLLVQEGQTVKAGQLLFVIDNSTFQASVRQAQAAVNSAKSQLRTAKLTFEN SEQLFKRNVIGQYELQSAQNTYETAKSAVAQAQASLASAKEMLNFCYVKSPAAGVVGSLP FKQGALVSASSPQPLTTISNISTVEVYFSMTEKDVLEMTKTAGNVSAAIASMPTVKLQLA DGTIYNQPGKVVKMSGVIDQATGTLSMIARFPNPDKLLKSGGAGSIVVPKVSQGAIVIPQ SYTAEVQDKVFVYTVGKDNKVKYQEIKVAPQNDGKNFIVTGGLKVGDRIVTHGITKLTDS MEIKPITEAQYAKKIAEAEKLGEIQGDYGKMKEAFK >gi|281305933|gb|ADEF01000015.1| GENE 34 47303 - 48730 1275 475 aa, chain - ## HITS:1 COG:ML2697 KEGG:ns NR:ns ## COG: ML2697 COG0617 # Protein_GI_number: 15828457 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Mycobacterium leprae # 31 464 40 474 486 227 34.0 4e-59 MRNLSNADLAHLLDNDIFHQISAVADHLDVECYVVGGYVRDLFLERPSNDIDVVVVGSGI EVAAALKQKLGKRAYLSVFRNFGTAQIKFKGMEIEFVGARKESYSHDSRKPVVENGTLED DQNRRDFTINALAVCLNQARFGELVDPFDGLLDLEDGLIRTPLDPDITFSDDPLRMLRCV RFSTQLKFFIEDETFEALRRNAERIKIVSGERIADELNKIMMTDHPSRGFIELYRCGLLE LILPELVAMDQVDTKNGRAHKNNFYHTLEVVDNICQHTDKLWLRWAALFHDIGKPRSKRW DSLVGWTFHNHNFIGAKMVPGIFRRLKFPLDAKMKYVQKLVDMHMRPIAIADDEVTDSAV RRLMNDAADDIDDLMTLCEADITSKNSQRKKRFLDNFRIVRAKLDDLKERDYKRLLQPCI DGNEIMELFHLKPSKEVGALKQALKDAVLDNKVPNEREPLMKLLLEKAKKMGLEK >gi|281305933|gb|ADEF01000015.1| GENE 35 48912 - 49349 353 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880096|ref|ZP_06288816.1| ## NR: gi|282880096|ref|ZP_06288816.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 145 1 145 145 253 100.0 3e-66 MKIFTWLILCALTIVSCAPSEDEQAAHLLAQIKALYERGEYMQTLDSITALRMQFPKAIK SRRESLRLWQQASLKLAQHDIAQTDSALQAILREIPGEDNLYKVNMMRVERDSLKARYEA MCGVVRMIRMRQKQDTKEYQHAANQ >gi|281305933|gb|ADEF01000015.1| GENE 36 49530 - 50072 583 180 aa, chain + ## HITS:1 COG:no KEGG:PRU_1858 NR:ns ## KEGG: PRU_1858 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 5 180 6 181 188 263 73.0 1e-69 MNHTKTEEQFKDVLAECRTLFENKLHDYSASWRILRPSSLTDQLFIKAKRIRSIEMKKKA MIEEGIRPEFMALINYGIIGLIQLEKGFVDEVDINTTEAMTLYDRHVQEVLELMLKKNHD YDEAWRMMRVSSYTDFILTKIQRMKELEDIHGQAIVSEGIDSNLMDIINYAVFGVIRLSE >gi|281305933|gb|ADEF01000015.1| GENE 37 50047 - 51393 1007 448 aa, chain + ## HITS:1 COG:no KEGG:BVU_0467 NR:ns ## KEGG: BVU_0467 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 13 439 12 433 433 429 49.0 1e-118 MALSGLVNKVKTILPNVCRLVLAITFIFSGYVKAIDPLGTQYKIQDYLEALSCQGMVPDW ITLASSVGLSAIEFSLGVFILLAIRRRLVSKITLTFMVAMTIVTLWLVIANPISDCGCFG DAIHLSNMETLAKNIVLLGCSIIIALWPLRMWRFISKTNQWIVFNYTILFIIASSLYCLY KLPFFDFRPYHIGANIPKGMEIPEDAEQPKFETTFLLKKNGETKEFTLDNYPDSTWEFVD SKTTQLTEGYVPPIHDFSIQTLEGEDLTEEILADTSYTFLLISPHLENASDLNFGNIDRI YEYAQTYNYPFYCLTASTKENIQHWQDLTGAEYPFCRTDETTLKTIIRSNPGLILLKNGN IIRKWSHHDLPQEADLQKPLYLSKIGTIEENSIPKRMMIIFLWFVLPLLLLTVADRLWAW SRWLRFKQKKKELTQEKTEDSISTLNND >gi|281305933|gb|ADEF01000015.1| GENE 38 51397 - 52158 950 253 aa, chain + ## HITS:1 COG:FN1366 KEGG:ns NR:ns ## COG: FN1366 COG0149 # Protein_GI_number: 19704701 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Fusobacterium nucleatum # 1 250 1 249 251 217 46.0 1e-56 MRKKIVAGNWKMNLNLQEGVALAKEINEVLKAEKPNCGVIVCTPFIHLASVAEVLDQNVV ALGAENCADKEKGAYTGEVSAEMVKSTGAQYVILGHSERRQYYKETPEILKEKVLLALKN GLKVIFCIGETLEERESNKQNEVVKAELEGSVFNLSADEFKNIIIAYEPIWAIGTGKTAT AEQAEEIHAFIRSIVAEKYGNEIAQDTTILYGGSCKASNAPELFAKENIDGGLIGGASLK CADFKGIIDAWKK >gi|281305933|gb|ADEF01000015.1| GENE 39 52243 - 52914 464 223 aa, chain + ## HITS:1 COG:no KEGG:PRU_1861 NR:ns ## KEGG: PRU_1861 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 13 223 7 201 202 142 41.0 7e-33 MKKFVTLLFILTCATIHSEAQSFLDHLQKKEPGKASVKVSQSKDIDELVNGKVKITITTL PQAPTTSKSKQDDKPSIHPLTPHKQDKITDKTKEDRNNKQESSVKTTERRATKEDTSTFE LDIPTIDMRKKVMRKSYKINGYRVQAFAGGNSRADRLRAESIRDNIKQVLPNEPIYVHFY SPRWICRVGNYRSYEEAARILKQVKGLGYKQACIVRGKITVQY >gi|281305933|gb|ADEF01000015.1| GENE 40 52936 - 53529 538 197 aa, chain + ## HITS:1 COG:slr0426 KEGG:ns NR:ns ## COG: slr0426 COG0302 # Protein_GI_number: 16331608 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase I # Organism: Synechocystis # 21 191 57 228 234 212 61.0 3e-55 MNQTNEFREGLDELASHYQEILQLLGENPDREGLEKTPMRVAKAMQVLTRGYTQDPKRVL LDALFEEKYDQMVIVKDIDFFSLCEHHMLPFYGKAHVAYIPHGHITGLSKVARVVDIYSH RLQVQERLTQQVKDCIQEALQPLGVMVVIEAKHMCMQMRGVEKQNSITTTSAFSGAFNQA KTREEFMNLLRGESRKI >gi|281305933|gb|ADEF01000015.1| GENE 41 53620 - 54369 598 249 aa, chain + ## HITS:1 COG:lin1894 KEGG:ns NR:ns ## COG: lin1894 COG0708 # Protein_GI_number: 16800960 # Func_class: L Replication, recombination and repair # Function: Exonuclease III # Organism: Listeria innocua # 1 248 1 249 251 375 69.0 1e-104 MKFISWNVNGLRACVKKNFQESFQQLDADFFCLQETKMQEGQLDLQFPGYTSYWNYAEKK GYSGTAIYTKHKPIHVSYGLGIEEHDQEGRVITLEMEDFFLITVYVPNSQDELKRLDYRM KWEDDFRAYITQLDQIKPVIICGDLNVAHEEIDLKNPKTNKRNAGFTDEERNKMTRLLDN GFIDTFRYLYPEQITYSWWSYRFRAREKNAGWRIDYFLISERLKERLHDAKIHTEIMGSD HCPVELELK >gi|281305933|gb|ADEF01000015.1| GENE 42 54443 - 55273 562 276 aa, chain - ## HITS:1 COG:yegX KEGG:ns NR:ns ## COG: yegX COG3757 # Protein_GI_number: 16130040 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Escherichia coli K12 # 68 258 66 257 275 110 34.0 3e-24 MPISPSSKHHHQESSKRKRWLRVGGIIVSALFILFCFLIILFPEQYRSLLYRWNLGSHGG VVAGHARSRYHYDGIDVSHYQGEIDWALVASDTCIQFVYVKATEGSTHVDTFYHRNMSGA KEVGLHVGSYHFLTSTSSVHRQFNHFKAHMSQHQQDLLPMVDVEWAGVKGWSKQQLQDSL AVFLWLVKQHYGRYPLLYADSRFYNAHLSPRFDKLPLFIARYSEEAPIVKGAHRHFIWQR DQYGWVDGINHQVDLNAFAVGTTLADILLPPTTVGE >gi|281305933|gb|ADEF01000015.1| GENE 43 55339 - 55845 234 168 aa, chain - ## HITS:1 COG:no KEGG:BVU_0599 NR:ns ## KEGG: BVU_0599 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 19 160 21 159 165 119 39.0 5e-26 MIKQCWIYLLLLIVSGCGVTQQNSRQKAAQRLDTASTVAHVLERRTWEAEMTYVMPLRMR MRYLQDRYGLKLSGDTLYSNLPYYGRAYSIPYGGGKGLVFQAPIQDYQLHYSKKGFARLS IDVRNDEDRYTYQLDVFMNGHVDLVVRSQQRDPISFSGKLVHTNKTHQ >gi|281305933|gb|ADEF01000015.1| GENE 44 56029 - 57573 1022 514 aa, chain - ## HITS:1 COG:BS_yurI KEGG:ns NR:ns ## COG: BS_yurI COG2356 # Protein_GI_number: 16080307 # Func_class: L Replication, recombination and repair # Function: Endonuclease I # Organism: Bacillus subtilis # 30 267 61 287 288 127 34.0 8e-29 MQLRNIKRQIFVGVLLLTSSVIWAQGPNGTGTYYQRTDGLKGAALKTAFHQVIMAPKVKT YKELWTVYRTTDRRPDGKLYDIYSNTTNYVIGSKAQGANYRGEGDAYNREHTMPKSWFNS ASPMLSDAFHVMPSDGYVNTRRSNFPYGETKGERYQSNNGYSKLGKCTLPGYSGTVFEPN DEYKGDLARVYFYMATCYESQIANWNSDVMSHNKYRPYVKWQMDMLMKWAKQDPVSEKEK ARNEAVYKVQGNRNPFVDYPELEDYLWGDSVSVAFSYDHYQGGHAPVVPSPAPQPGVDSQ PSVTEETVLQESFANGRGEFTVDDKRLSANMRYVWSSYKNNYVSCMKASAYVQSQNQAAE SWLVSPVIDLTSYTQAVLTFEQACNFLKTYKNRAKEFLSICVSDDGGMHWKNCSVNIPHQ DKWTFVPTEVDLTEFAGKQVQIAFAYKSKTACAPTWEIMNLKLTGKKTSTYIYRVTTDRT QLDVLKPMYDLSGKQVNRHHHGVVIQNGHKYLKR >gi|281305933|gb|ADEF01000015.1| GENE 45 58034 - 58447 457 137 aa, chain - ## HITS:1 COG:BS_ydiB KEGG:ns NR:ns ## COG: BS_ydiB COG0802 # Protein_GI_number: 16077658 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Bacillus subtilis # 25 137 28 136 158 88 38.0 3e-18 MDIKIESLDHIHEAAQQFIDNMGKGNVFAFYGKMGAGKTTFIKAICECLQVDDVITSPTF SIVNEYYSNKLDDSIYHFDFYRIKKVEEVFDMGYEDYFYSGRLCFLEWPELIEGLLPKDA VKVHIMEQEDGSRFISF >gi|281305933|gb|ADEF01000015.1| GENE 46 58461 - 60044 1301 527 aa, chain - ## HITS:1 COG:BS_resD KEGG:ns NR:ns ## COG: BS_resD COG0745 # Protein_GI_number: 16079369 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Bacillus subtilis # 6 121 9 123 240 84 37.0 7e-16 MSNGLLLWVDDEIDLLRAHILFLEKKGYEVVTVSNGADAIEACQEQTFDLVLLDEMMPGL TGLETLQQIKEIHPATPVVMVTKSEEENIMEQAIGSKIADYLIKPVNPNQILLTLKKNIH RREIVTEVTQSGYQQSFQAIAMQMMDCQTLEDWKGIYKRLVHWELELSAANSNMTEMLQM QKVDANQGFAKYISKHYLDWVAPRQTNRPLLSPDIFKKKIFPLLDQGEKVFLIVIDNFRY DQWRAIANDLSDMFEIDDDLYCSILPTATQYARNAIFSGLMPQQIVEMFPDLWVDEDEEE GKNLNEAPLIKTQIERYRRHDSFSYHKVNDSGGADKFFDQLHELSKNDLNVLVVNFIDML SHARTESKMVRELANNESAYRSITKSWFRHSMMSELMKLLAQSNYKVILTTDHGSIRASK PVKIIGDRNTNTNLRYKLGKNLNYSAKEVFTIKKPALAQLPSPNISTTYVFATGDTFLAY PNNYNYYVAYYKDTFQHGGISMEEMLVPLITLTPKKRVKTKEQTVKN >gi|281305933|gb|ADEF01000015.1| GENE 47 60047 - 63418 2469 1123 aa, chain - ## HITS:1 COG:no KEGG:PRU_1900 NR:ns ## KEGG: PRU_1900 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 15 956 3 933 939 969 52.0 0 MRLWQLRYVAFLIQIIILLFLASGCSTQKNTARSRWWHAFNARYNTYYNGTVAYIDASLE KENGHQDNFTELLPLYPVGSKSSRELGKANFERAVEKSKKAIKLHSIKKRPEWRSGKRKT AKDREWLNRKEYNPFLWKAWMLMGRAQFHSGAFDEAVSTFSYMSRLYQTQPSIYGRARAW LAKSYIEQGWLYDAEDVIRNMERDSVHWQAQKEWDYTYTDYYIHTKEYAKAIPYLRKVIK HEMRRRQKARQYFLLGQLYEAINQKELAYQAYRRVIRLHPPYQIEFNARIAMTKVMAGTQ GHQMIRKLHRMAANDNNKDYLDQVYYAIGNIYLGQKDTLRAIDAFEEGNKRATRSGIEKG VLLLRLGDLYWNREKYDDAKRCYGEAIGLLDKDREDYGQMARRSEILDELVPYTNAVQLQ DSLQVLAKMPEAQRNAAIDRVIKALKKKEKEEADLLAMQSTRQESQDDFNTPFDPQERMT KRNTLPNVNGQRSGEWYFYNPMAVNQGKTAFQRLWGKRENVDNWQRINKTVVSLGQQQEL SELQLDSIRQQESMEDSLQQVPDSAQNDPHQRAFYLAQIPFTPDQVVASNQLIMDGLYHA GVIFKDKLDNLRLGEKALRRLVEQYPTYEHMDLAYYHLFLLYSRLHQPTLANGYVQRLKT QFPKSEWTVLLTDPYFQENAKLGVHIEDSIYAATYNAFKADRYDEVLANTHISETRFPLG ANRDKFLFIGGLGKLNRGDATLCLADLHTLVEKYPESKLSPLAGMIINGVQAGRKLRGGK FDIGDVWSRRAAVLSDSDSIAKRTFSNERNTNFTFMIAYHPDSVNENQLLYRVAKYNFTQ YVVRNFDVVITQDDFGLHLMKIAGFLNFDEALQYARAFHKQRELASLLKHARTFVISDVN LELLGTNFSYDDYDKYYTKHFAPLKISTFQLLTEPTEVKTQAQPKPTLEEVDRLLDDATI IDNGLENKPLDSGTYVIPVEDAKSSTTQGGTIVPVEQPKKESNSGETVISLAPRTTSKTL LPADSAKTKSTKQLPANAKKSPQKVPTQPVQPAKAKPKQEPNKQQPQRVGETIIYFEDGK TAKDKTGKPKTVDKTTDKNKKKKKKAEPKVIDFGDEYYDLEGF >gi|281305933|gb|ADEF01000015.1| GENE 48 63399 - 64229 705 276 aa, chain - ## HITS:1 COG:MA0025 KEGG:ns NR:ns ## COG: MA0025 COG1108 # Protein_GI_number: 20088924 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Methanosarcina acetivorans str.C2A # 2 258 3 259 274 194 44.0 1e-49 MEILSYTFFQNALIGALLASVLCGFIGTYIVARRLVLISGGITHASFGGVGMGVLLGVNP ILSALAFAIFSACGIQWMSNQYNVRIDSAIAMFWTLGMSVGIICCYLTPGFLPDLPSFLF GSILSIGSADILFLLVLTVFVIVVFTLLFRAILSVAFDNRFAQSQQLPVTGIEYLMMILI AMTIVATLRMVGIVLAISLLTIPQMTANLFTYRFKRMILWSIFFGWIDCLIGLSISYMLN IPSGAAIIFVSILIYGLLKAIKVLRNKFINNEVMAA >gi|281305933|gb|ADEF01000015.1| GENE 49 64232 - 64624 341 130 aa, chain - ## HITS:1 COG:no KEGG:BDI_3147 NR:ns ## KEGG: BDI_3147 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 127 1 133 139 108 45.0 7e-23 MIFLVLLLIGIGVVAALFGFFASKSGEHQEEMALPAHSCATCDGIDTRCEQVCMMEAATK EIEYFNDEELDCYQGRAADAYTDEEVKEFAEVLETMRQEEVKDWNRSLILRGINLPNQLK DEVIMLMSNS >gi|281305933|gb|ADEF01000015.1| GENE 50 64642 - 65895 813 417 aa, chain - ## HITS:1 COG:VC1732 KEGG:ns NR:ns ## COG: VC1732 COG0128 # Protein_GI_number: 15641736 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Vibrio cholerae # 16 404 16 419 426 211 33.0 2e-54 MTQYKITAPSYFDHTVQLPSSKSVSNRALIIHALSGGKVQPHHLSDCDDTQVIMNAIMHM PPVIDIKAAGTAMRFLTAFLSISEGEHVLTGTERMQHRPIGPLVDALRYLGADIEYMGED GYPPLRIHGKQLTGGNIEMPGNVSSQYVSALLMLGPVLPKGLNIKLTNGMISRPYIDLTL WVMQQFGAEVEWTDIDTIAVRPKPYAPCTYYIESDWSAASYWYEILALSTHRDNTFFLPG LLDGSKQGDSVLRYLFSLLSVKTEVEEADDTHSAGMRITRHERNLPRLEYDFVNCPDLAQ TFVVCCAVLDIPFLFTGLSTLLIKETNRLEALKVEMRKLGYVIKEQNKSELVWNGERCEP SFEPIDTYEDHRMAMAFAPAAIKFPGLRINHPEVVSKSYPQFWNDLRSVGFEIEESK >gi|281305933|gb|ADEF01000015.1| GENE 51 65906 - 67057 971 383 aa, chain - ## HITS:1 COG:no KEGG:BF0631 NR:ns ## KEGG: BF0631 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 42 383 112 436 436 286 46.0 9e-76 MKYYIYLFLLLCSVLGACNDDNDGHAKKNYSQVVDEDDDDTKATLNDDYIYQLPLIFHVL YQDIDDPTQYVPVSRIQSLVVHLNELYQGHIYGESENIRVRFFLAQYDEEGHRLKTPGVD YVKYTGKYPIDVQEFMNDNNRKYVKYLWEPNEYINVFLYHFSSEKNAQILGISHLPYVVK GSTSLEGLETIQRSYLTKKNLSFAYCTSINSNFINSESTRYQLSDKGKSGYQYLSTDVNV TLAHELGHYLGLHHTFTEKKVGGNYEAIDDCFDTDYCKDTPSYNKVNYNEWLNDYLRSMG KRQVDMKRLVMRNNCAGETFDADNIMDYAIGYGFRFTKEQKDRIRQVLYYSPLIPGPKKN RSKSRALKHEDDEVYQLPIQTIR >gi|281305933|gb|ADEF01000015.1| GENE 52 67378 - 67563 149 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALNASIIFDNQIFCRKYRLIFNSYLNHCISTRFIVFRFYSTLLSKLEHWDKGINPWRLA D >gi|281305933|gb|ADEF01000015.1| GENE 53 67998 - 68312 420 104 aa, chain - ## HITS:1 COG:Cj0147c KEGG:ns NR:ns ## COG: Cj0147c COG0526 # Protein_GI_number: 15791535 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Campylobacter jejuni # 3 104 5 104 104 115 53.0 2e-26 MEVEITSKNFENYKNGDLPLVVDLWATWCGPCRAVGPVISELAEDYDGKIVVGKCDVEEN DDLAMEFGVRSIPTILFFKGGELVDKFVGAASKATLDEKFKALL >gi|281305933|gb|ADEF01000015.1| GENE 54 68388 - 72095 3688 1235 aa, chain - ## HITS:1 COG:BB0579 KEGG:ns NR:ns ## COG: BB0579 COG0587 # Protein_GI_number: 15594924 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Borrelia burgdorferi # 4 1209 21 1135 1161 736 38.0 0 MNDYVHLHVHTYYSILDGQSPIKRLVDKAVADGMQGMAITDHGNMFGIKEFFDYTNSVNK KLKAEGKQPFKPIFGCEMYVARRTKQDKVKEMGDMSGYHLIVLAKNYNGYKNLIKLVSRS WVDGYYMRPRTDRADLEKYHEDLIVSSACLAGEVPRKILKGDMEGVRETIEWYKRVFGED YYLEIQRHEVKDPHIRANREAYPLQQRANKVILELAKEYGVKVICTNDVHFVDQDNAEAH DHLLCLSTGKDLDDPTRMLYSKQEWFKTRAEMNQVFDDLPEVLTNTLEILDKVEAYSINH DPIMPNFPIPKSFGTEEEWEQKFSKEDLYREFTTDENGENPLSEADALKRIEHLGGYEKM YRIKFEADYLEQLTYEGARKIYGDSFSKEIDDRIRFELHVMKTMGFPGYFLIVSDFIRAA REELSVMVGPGRGSAAGSVVAYCLGITKIDPLKYDLLFERFLNPDRISLPDIDTDFDDDG RGKVLKWVMDKYGHENCAHIITYGSMATKNSIKDVARVEKLPLNRSNALCKAIPDRLPDG LKMNLINAIKCTPELRDAEASTDIRESNTIKYAKMLEGTVRGTGIHACGFIICRDPISDW VPISTADDPDFKDEKTNCTQYDGHVIEETGLIKMDFLGLKTLSELKEAVKNVKLTRGIDI DLDNIPIDDELTYQLYQEGRTIGTFQFESSGMQNYLRQLCPTKFGDLIAMNALYRPGPMD NIPSFIARKKGLEPISYPIPIMEKYLKDTYGITVYQEQVMLLSRLLANFTRGESDALRKA MGKKKKAIVDAMKPKFIEGGKKNGYDPKILDAIWADWEKFASYAFNKSHAACYSWVAFQT AYLKAHYPAEFMAAIMSRRKDQITEVSKLMDECKSMNIATLGPDVNESYEKFGVNHHGEI RFGLAAIKGMGNAAAKAIIDEREAHGTYKDIFDFVQRVDFTNVNRKAFESLALSGGFDSF GLPRESYFTANAKGELFVETLVRYGQLYQTKKSELEHSLFGGENAVEIATPAIPKPELWS NIERLNKEHELVGIYLSAHPLDEYSIVLKTMCNTQCCELADRAELSKKSNIVFGGMITDV KDKFTKTGKPCGFVTIEDFSGSGELAFFGEEWGKWKGMMIVGSTIYLIGKCTQRFRDSDF YDLRIQDVQYLQTVKDKRIEKFTIVMNSDTIDDVMVSDITAMLADSPGSTQLCFQIVDKK RNASVLLHSNIRNISLSHELIRYVESHPDMSYLVN >gi|281305933|gb|ADEF01000015.1| GENE 55 72224 - 72916 392 230 aa, chain + ## HITS:1 COG:RSc2074 KEGG:ns NR:ns ## COG: RSc2074 COG0688 # Protein_GI_number: 17546793 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine decarboxylase # Organism: Ralstonia solanacearum # 44 229 39 214 215 142 41.0 7e-34 MIKRIKKLKKIRIHREGTDTLIWGFIAIAAIDLLLWRAFDTKIPFYSFTVVFGIIYGIVL NFFQCPVRFFPSEDTENIVVAPADGKIVVIEEVEENIYFHERRLMISIFMSLFNVHANWF PVDGHVKLVHHQDGNYHKAWLPKASEENEHSDIIITTPDGKDILCRQIAGAMARRIVTYA KEGEDCYIDEHLGFIKFGSRVDVYLPIGTEVCVKMGQKTVGDQTIIAKLK >gi|281305933|gb|ADEF01000015.1| GENE 56 72986 - 73741 509 251 aa, chain + ## HITS:1 COG:BS_pssA KEGG:ns NR:ns ## COG: BS_pssA COG1183 # Protein_GI_number: 16077296 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine synthase # Organism: Bacillus subtilis # 9 146 4 125 177 82 38.0 6e-16 MNHFIASNIPNALTCSNLISGCIATLCAYSGNTQMALIWILIGATFDFFDGMSARLLKVS SPIGKELDSLADVVTFGVAPSTMIFYTLSVIDYPSFLQSPPQYSFDIYRTVIPYLAFLMA AFSALRLAKFNIDQRQTDSFIGLPTPANALFWGALILTNPHWIENNSWSLFCILALMLTS CYLLVCELPMFALKFKHWTWKGNTIRYSFMIFTVIVLCLFGVLKGWWIVIACYFLISLYL YITGKSKRIPK >gi|281305933|gb|ADEF01000015.1| GENE 57 73763 - 74053 237 96 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880117|ref|ZP_06288837.1| ## NR: gi|282880117|ref|ZP_06288837.1| hypothetical protein HMPREF9019_1943 [Prevotella timonensis CRIS 5C-B1] # 13 96 13 96 96 113 100.0 3e-24 MIFKIILILFLLGLVFVSLSAIRVIAFFRKGMQQFKQQTQQQNTQQRQQQHRYSNGQVVV DHRNAEEANKKIFKKNEGEYVDFQEEPIHDETEQQL >gi|281305933|gb|ADEF01000015.1| GENE 58 74225 - 74935 809 236 aa, chain - ## HITS:1 COG:FN1622 KEGG:ns NR:ns ## COG: FN1622 COG0528 # Protein_GI_number: 19704943 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Fusobacterium nucleatum # 4 234 6 236 239 266 56.0 2e-71 MVKFKRILLKLSGESLMGKQNYGIDAERLSDYARQIKEVHDMGVQIGIVIGGGNIFRGLS GSQKGFDRVKGDQMGMCATVINSLALSSALGAIGVKTKVMTAIRMEPIGEFYNKWKAIEA MENGTICIFSCGTGSPYFTTDTGSSLRGIEIEADVMLKGTRVDGVYTADPEKDPTAQKFD EITFDEIYHRHLKVMDLTATTMCRENHLPIYVFNMDVYGNLKKVISGESIGTLVHD >gi|281305933|gb|ADEF01000015.1| GENE 59 74949 - 75701 496 250 aa, chain - ## HITS:1 COG:lin2018_2 KEGG:ns NR:ns ## COG: lin2018_2 COG0340 # Protein_GI_number: 16801084 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Listeria innocua # 10 234 17 241 253 91 26.0 1e-18 MMTRKLIQLDTIGSTNVYLSEHASVFQEDMVVVVADYQTCGKGQGQHSWESESGKNLLFS ILIHPHHIPIHRQFLLSMAGALSIKRVLDGYVDDISLKWPNDIYWRDSKLCGTLIENTVD SQGIKNSIFGIGLNVNQAVFLSDAPNPISLFQILKHEVNREKLLERLIDSFARQLDLLSV DPQKYVVKPYHEALYRKGEAHLYQDSNGIFMAILEGVNEQGQLLLRDEQGHLRTYSFKEV TFIHTKKKNY >gi|281305933|gb|ADEF01000015.1| GENE 60 75704 - 76078 342 124 aa, chain - ## HITS:1 COG:CAC1763 KEGG:ns NR:ns ## COG: CAC1763 COG0792 # Protein_GI_number: 15895040 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease distantly related to archaeal Holliday junction resolvase # Organism: Clostridium acetobutylicum # 8 103 9 103 122 59 39.0 1e-09 MAQHNELGKWGEEQAVAFLHQKGYTIRECDWKQGSRDIDIIALTPDGITCVFVEVKTRRD DEVTLPSEAVDLKKMRNIGFAADAYVKLHHIQEELRFDIISVVGTSDTTMQIEHLVDAFN PVLL >gi|281305933|gb|ADEF01000015.1| GENE 61 76176 - 76631 394 151 aa, chain + ## HITS:1 COG:BS_yaaJ KEGG:ns NR:ns ## COG: BS_yaaJ COG0590 # Protein_GI_number: 16077086 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Bacillus subtilis # 7 148 1 147 161 122 44.0 2e-28 MATEEELKRDEYFMRKALIEAQAAFDEGEIPIGAVVVCKGQIISRAHNLTERLHDVTAHA EMLAITAATNQLGGKYLTDCTLYVTIEPCPMCASACGWAQLSRVVFGASDDKRGFKRYAP KVLHPKAEITNGVLREDCMALMQLFFKKRRD >gi|281305933|gb|ADEF01000015.1| GENE 62 76782 - 77639 916 285 aa, chain - ## HITS:1 COG:no KEGG:PRU_1870 NR:ns ## KEGG: PRU_1870 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 285 1 288 288 256 54.0 6e-67 MKKLLSVTLIAILSLAFVGCQGNKQSAESADAAQSDSLRQVISQKDNEINDMMGTLNEIQ DGFNEINAAENRVTIAKGGEGANKEQQIRENIQFIAKTMKHNRELIAKLRNQLKQSSVKG DALKNTLENLSKQLEEKDKQLQQMRAELDAKDIHITELDEAINNLHTNVNNLANENSKKS QVINSQDKQLNTAWFVFGTRKELKEQRIIEGDKVLQSNFNKNYFTKIDIRVDKEIKLYSK YAKVLTMHPSSSYLLQRDANKQYTLKITNPEIFWSTSKYLVILVK >gi|281305933|gb|ADEF01000015.1| GENE 63 77636 - 78337 571 233 aa, chain - ## HITS:1 COG:sll0818 KEGG:ns NR:ns ## COG: sll0818 COG0313 # Protein_GI_number: 16330705 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Synechocystis # 1 232 1 234 279 229 51.0 2e-60 MGVLYIVPTPVGNMEDMTMRAIRILNEVDLILAEDTRTSSKLLKHYDIQNRLLSHHKFNE HGTTAGIVERLKAGQTIALISDAGTPGISDPGFLLAREASKAGITVQTLPGATACIPAIV SSGLPCDRFCFEGFLPQKKGRQTHLESLRDEVRTMIFYESPYRLLKTLQQFSDLFGPERQ VSVAREISKVHEESVRGTMEEVINHFKDTAPRGEIVIVVAGKTKNKKSKTEEI >gi|281305933|gb|ADEF01000015.1| GENE 64 78557 - 79075 333 172 aa, chain + ## HITS:1 COG:SA1921 KEGG:ns NR:ns ## COG: SA1921 COG1435 # Protein_GI_number: 15927693 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Staphylococcus aureus N315 # 1 161 17 184 199 165 47.0 4e-41 MFSGKTEELIRRMKRAKFAKQRVEIFKPAMDVRYSAEDVVSHDQNSIPSTPIDTSSSILL LASNIDVVGIDEAQFLDQGLIDVCNQLANKGIRVIVAGLDMDFQGKPFGPIPGLCAIADE VVKVHAICVKCGALAYISHRLVDNDKRVLLGEKQTYEPLCRECYQRALQEEQ >gi|281305933|gb|ADEF01000015.1| GENE 65 79320 - 80255 795 311 aa, chain + ## HITS:1 COG:L197809 KEGG:ns NR:ns ## COG: L197809 COG0628 # Protein_GI_number: 15673164 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Lactococcus lactis # 6 285 8 284 313 99 28.0 1e-20 MHVKVRSLAIIITMLAVLGVMAGVVYAIIPSMIEQIDKLNNILNNWISQTTHSSDFGSYI SQWVEKNQAGIEKFMKSKDFSELVKTTMPKLFSIVGQTASIIISVVASLITLLYTFFILQ DYEFLTDNWIRIFPKKNRPFWSELMQDVERELNNYIRGQGLVSLCLGILFGIGLTIIDFP MAIALGIMMGLMNLVPYLHTLALVPMAFLAMLKAADTGQNFLIVFGLSLLVFLIVQVISD TVLTPKIMGKAMNLNPAILLLSLSIWGTLLGFIGLIVALPLTTLLIAYWKKYVTQEKQQE VLPQNEATTDQ >gi|281305933|gb|ADEF01000015.1| GENE 66 80571 - 81044 122 157 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282878188|ref|ZP_06286984.1| ## NR: gi|282878188|ref|ZP_06286984.1| putative lipoprotein [Prevotella buccalis ATCC 35310] # 17 131 17 131 136 147 66.0 2e-34 MKKLVLFFPLLWVVLSLSTSCKFAPSSDLGDTVAASVFEPEDTALSHKNLSKDVSKTIDS ADIFVIGEGSTRQFLQLISYPSRRDTMTYAKHRPLKVKGSAQFGRIVRIGFMFGKDSVKL VKTVEEVQTDTFETKRSHAHHAGSDANNISMSRGKAY >gi|281305933|gb|ADEF01000015.1| GENE 67 80990 - 82024 507 344 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 15 296 10 286 378 199 37 5e-50 MNDSMEHKDVISTNPFAVTLLKWFEEYGRSLPWRETTDPYAIWLSEIILQQTRVQQGWEY WERFMHRFPHVEDLAAATQDEVLRLWQGLGYYSRARHLHEAAKQVVALGHFPCTMSELKA MKGVGDYTAAAIGSIAFGLPVAVVDGNVYRVLSRYFGISTPINTTEGQKEFVDLAQSLLP TSAPSAYNQAIMDFGAIQCTPTSPRCLICPLADSCEALRSGKTAELPVKLRKLKIKKRHF SYIYLRCQGMTAFHKRSAGDIWQGLWEPLLIENADLPVFSAPLSLIKKGVKHVLTHRVLT ADFYLVELNQRPSLPEDYIWIPEDELDQYALPRLIEILLASLPA >gi|281305933|gb|ADEF01000015.1| GENE 68 82600 - 83082 587 160 aa, chain - ## HITS:1 COG:MTH158 KEGG:ns NR:ns ## COG: MTH158 COG1528 # Protein_GI_number: 15678186 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Methanothermobacter thermautotrophicus # 1 159 1 161 171 126 40.0 1e-29 MISKKLQDALNEQIVAEIYSANLYLSMSFYMEKEGFEGFSTWMKKQSAEEMDHAYQMASF IIKRGGEAVVNQIPAVKQKWTTPLEAFEDTYKHECRVSQLIDKLLELAISEHDNASQDFL WQFVREQVEEEATASGIVDRIKRMGDSAIFNLDQQYGSRA >gi|281305933|gb|ADEF01000015.1| GENE 69 83353 - 85515 1559 720 aa, chain + ## HITS:1 COG:SPBC887.14c KEGG:ns NR:ns ## COG: SPBC887.14c COG0507 # Protein_GI_number: 19113280 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Schizosaccharomyces pombe # 6 403 313 758 805 174 31.0 5e-43 MEENTELKLAWEFVEHTEQSIFLTGKAGTGKTTFLKMVKKHSGKRLIVVAPTGVAAINAG GVTIHSFFQLPLSPFVPNATVRERYNFGKEKRKIIRTLDMLIIDEISMVRSDLLDAIDAV LRRYRQHDRPFGGVQLLMIGDLQQLTPVVTPADEALLRPYYDTPYFFGSHALQQTPYVTI QLQKVYRQQDETFLNILNHLRENTLSPTDLQVLNDRYQPHFQPRQEEGYIRLTTHNNKAD SYNDMRLEQLPAKAYHYMASIKGTFPEYSYPTSESLVFKVGAQVMFIKNDSSAEHLFYNG KIGHIIYLDDNHIEVLCPGDEHSIVVEKQTWENTTYKINEATKEIEPTVQGTFSQYPLRL AWAITIHKSQGLTFERAIIDAGSSFASGQVYVALSRCKTLEGLVLASPITAEAIINDQGV ADYINRQDEEARKSIAQLPRLKDDYERFQLIELFQFMDIWRAEEMLCRLLIEFFHSYSKL ILIHKSTVKELQEKVNIIAYKWTTYISQLTIEQIHDPQFLERVVASANYFKKTLKHYLED LMEQTLEVKSNNKVAMHRLDTYLTDLREMYLAKKYLLQTVITNGFTTENYLRAKQEALLM ALDELSPTPQRRSKSTKKKKEKKENTKDITLQLLKSGLTPLQIATERKLTTSTIYTHLGY FVKEGVIDINEFMEQEHIQNIQQVIQKIGIDNGRTAIKALCLPTVTYEEINLIIAAFHRS >gi|281305933|gb|ADEF01000015.1| GENE 70 85701 - 86636 717 311 aa, chain + ## HITS:1 COG:lin0348 KEGG:ns NR:ns ## COG: lin0348 COG3568 # Protein_GI_number: 16799425 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Listeria innocua # 24 260 4 237 257 152 37.0 8e-37 MKKFALTVFILTASLCIQAQNLFVATYNLRYDNEDDRQEGNGWTKRCQVICDFLNFEQPD IFGTQEGLKHQLEDLKRGLDQYDYIGIGREDGKEQGEHSAIFYKKDKLKCFDKGNFWLNE TPEKPVLGWDAACVRICTWGKFRDWKTNLTFYFFNLHMDHVGVVARREAAKLVIKKIKEI AGNNAPVILTGDFNVDQHDEIYKIFSESGILKDSYVAAKHRFAENGTFQDFDSSMKSESR IDHIFVSNKFEVNNYAIHTDAYWTANEKMPKLKSGNAPKELEFQQYTHRLPSDHYPVLAK IRYEKYGTCKF >gi|281305933|gb|ADEF01000015.1| GENE 71 86713 - 88440 1559 575 aa, chain - ## HITS:1 COG:CC3393 KEGG:ns NR:ns ## COG: CC3393 COG1960 # Protein_GI_number: 16127623 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Caulobacter vibrioides # 54 454 56 469 603 200 33.0 5e-51 MSNYYTDHPEIAFHLEHPLMKRIVELKERNYEDQEHFEDAPVNYEDAIENYKRILEITGD VAANIIEPNSEAVDLEGPHLENGRMKYASKTIENIKATRQAGLWGLSMPRRYGGLNLPNV TFSMLSEMIAAADGGFQNIWSLQSCIDTLYEFGTDEQRERFIPRVCEGATMSMDLTEPDA GSDLQRVMLKATFDEKNDCWRLNGVKRFITNGDSDIHLVLARSEEGTKDGRGLSMFIYDK RDGGVDVRHIENKLGIHGSPTCELVYKNAKAELCGSTRLGLIKYVMALMNGARLGIAAQS VGVAQEAYNEAVAYAKERQQFGQPIIEFPAVYDMLSRMKAKLDAGRSLLYQTARYVDIYK ALEDIQRDRKLTPEERAEMKKYTRLADAFTPLAKGMNSEYANQNAYDAISVHGGSGFIME YKCQRLYRDARIFSIYEGTTQMQVVAAIRYIMNGTYLNIMREMIEQPVSEALTPLRQKVE AMLSQYEESIAFVKDANCQETQDFLAHRLYNMTANLVMSLLILDDATKAENLFAKSAHVF VHHAEEENAGHSLFIKNFTPSALSYYRTSEKEVTE >gi|281305933|gb|ADEF01000015.1| GENE 72 88510 - 89538 1329 342 aa, chain - ## HITS:1 COG:CAC2709 KEGG:ns NR:ns ## COG: CAC2709 COG2025 # Protein_GI_number: 15895966 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, alpha subunit # Organism: Clostridium acetobutylicum # 6 338 9 332 336 260 44.0 3e-69 MYMNNVFVYCEIEGTTVAEVSQELLTKGRKLATQLGVELHAMAIGTGIKGNVESQILPYG VDKLFVFEGEGLSPYTSAPHTDIMVKLFEDEQPQICLMGATVIGRDLGPRVSSSLTSGLT ADCTELEIGDYEDRKAKRVYKNLLYQIRPAFGGNIVATIVNPDHRPQMATVRSGVMQKAL YDGKARGEVVYPVVTEYVSPAAYAVQVIERHVEEPKHNLKGAPIVVAGGYGVGSKEGFNL LFELADVLHAEVGASRAAVDAGWIDTDRQVGQTGVTVHPKVYIACGISGQIQHISGMQDA GIIISINTDPDAPINKIADYVITGSVEEVVPKMMKYYKENSK >gi|281305933|gb|ADEF01000015.1| GENE 73 89655 - 90524 993 289 aa, chain - ## HITS:1 COG:FN0784 KEGG:ns NR:ns ## COG: FN0784 COG2086 # Protein_GI_number: 19704119 # Func_class: C Energy production and conversion # Function: Electron transfer flavoprotein, beta subunit # Organism: Fusobacterium nucleatum # 3 288 1 261 262 178 42.0 1e-44 MKLKIVVLAKQVPDTRNVGKDAMTEAGTVNRAALPAIFNPEDLNALEQALRLKEQNPGST VGVLTMGPPRAGEIIRQGLYRGADTGWLLTDRLFAGADTLATSYALATAIKKIGDVDLVI GGRQAIDGDTAQVGPQVAQKLGLHQVTYAEEIIKVEDGVATIRRQIDGGVETVEAPLPVV VTVNGSAAPCRPCHAKLVMKYKYATCPLERKGDEAWSALYEKRPYLTLTQWSVADVDGDP AQCGLSGSPTKVKAVQNIVFQAKESKTLTAADKDVEALMKELIDEKIIG >gi|281305933|gb|ADEF01000015.1| GENE 74 91086 - 93062 1626 658 aa, chain + ## HITS:1 COG:BH1375 KEGG:ns NR:ns ## COG: BH1375 COG0358 # Protein_GI_number: 15613938 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Bacillus halodurans # 2 439 5 438 599 270 36.0 1e-71 MIDRVTVERIKDAANIVDVVGEFVTLRKSGANYKGLCPFHNEKTPSFFVSPARGTCHCFG CGKGGNSVSFIMEHEQMTYPEALRWLARKYHIEIQEREMSDEERREQSERESMFIVNEWA ANYFSDLLHHHPDGQAIGMQYFRSRGFRDDIIQKFQLGYDLPNRFALAQAALGKGYQKEF LIKTGICYQNDRGDLIDRYAGRVIFPWIGLNGKVVGFGGRVLDARTKGVNQKYVNSPASE IYQKDRELYGIYQAKKAIAKEDWVYMVEGYTDVISMHQCGIENVVANSGTALSLHQIHIL HRFTSNITLLYDGDAAGIHAAFRGMDMLLSEGMNIKILLLPDGEDPDGFARKHTAEDLKT YIEQHQTDFIQFKTDLLVKNETDPYKRSEGINSIIKSIAVVPNQVLRDTYAQDCARRIGM KEETLINTMNRYIRNYREEMSKEERRQIEALNTSKPTPQLPTAQPMEQASQVEKMLVQLI IRKGEQLVLEQVEDENHQLFDLTVAQFIDYSLREDNLHFDHEISNRILTEAVEHSGEEGF VAESYFIHHEDIEISKLATEMSTDRYQLIAEEKPTSDMKYMDEAQLATEAQEALRNHTIH LLMDFRMDYVEQHLKDLMQQIGQVSNDPERLQELVAEYKDMQQIRNALAKKLGSHIIV >gi|281305933|gb|ADEF01000015.1| GENE 75 93208 - 94632 845 474 aa, chain + ## HITS:1 COG:BS_ywnE KEGG:ns NR:ns ## COG: BS_ywnE COG1502 # Protein_GI_number: 16080712 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Bacillus subtilis # 7 474 6 482 482 329 37.0 8e-90 MIYVHWIILAIYIVIVLGTIITILLDNRQPSKTMAWLLVLIFVPIVGIILYFFFGQNTRK ERSMSQRSMDELTKRSMLEFVVQKDLKLPTHYQPLIQLFTNQNTALPFKDNEVDIFVEGA DFFLALLKAIGQAKDHIHIESYIIEDDALANLIADALIDKAAEGVEVRMIYDYVGCWKVP SRYFERLRAGGVDVRSFMPVHFPAFTGKVNYRNHRKLAVIDGKIGFIGGMNIAMRYVRGS KSQPWRDTHLRIRGGAVYGIQRAFLVDWYFVNRTLISSQKYYPPLDTSISNNCIAQVVTS SPISPWPEIMQGYVRILLQAQHYVYMETPYFLPTEPVLFALRTAAVAGVDVRLMLPKHSD VKIVEWASRSYISTMIEAGVKVYLYTEGFNHSKLLVADDNLCTCGSTNIDFRSFENNLEA NIFFYDQSLALRMKEVFFKDQEACVLIEKLSDLTHRPFINRLWESIVRLLSPLL >gi|281305933|gb|ADEF01000015.1| GENE 76 94948 - 95601 522 217 aa, chain - ## HITS:1 COG:no KEGG:BDI_3895 NR:ns ## KEGG: BDI_3895 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 45 181 627 766 766 107 42.0 2e-22 MNNLKLLILALSCSLVLSCSSTKDVKDMYLVLKVDTTARYEQYAYVNQDGQTVVPYNRYL LCYTDTIRTIGFVFKPNVGCVAINNKGKELFNVFMANNGNDYPKDGLFRILDKSGTKMGV ANMKGQVIVKPKYDAIFPYYEGLAAVAVGCKTVRPQDDPEHEYVVGGKWGFIDKQGKEVI PLEYDSIANYRRFKNGKALVLKGEKFFQIDSKGRTLK >gi|281305933|gb|ADEF01000015.1| GENE 77 95714 - 95878 80 54 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLLFSIRKCHNKEILSDLVLSLRVFILMLVNGYLVYSKYKNTNYIYSDKNYMNL >gi|281305933|gb|ADEF01000015.1| GENE 78 96178 - 96840 219 220 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880137|ref|ZP_06288857.1| ## NR: gi|282880137|ref|ZP_06288857.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 220 1 220 220 439 100.0 1e-122 MVDELWLEKWFHTFNHSYFEDILPLPRLQMSSSRTQLGSMSCKRKLTWRGITTYDYVIRV SNYYVQTERQYQNVLLHEMIHYYISYKGICDTSPHGKVFCQIMHKLNQTYGWEIHVSSRC KAMIPAAKTNKKRSYLILFTEVDSRGCYLSVVHPHYFGTLVQSLSRIPAVKKYCWYTSSD SYFSDFPTVRTLRGRKLSRAEWEKIARKLKPLDIHSCHAG >gi|281305933|gb|ADEF01000015.1| GENE 79 96877 - 98331 1035 484 aa, chain - ## HITS:1 COG:CAC2854 KEGG:ns NR:ns ## COG: CAC2854 COG0507 # Protein_GI_number: 15896108 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Clostridium acetobutylicum # 65 223 360 498 739 68 33.0 4e-11 MLIDELIFQIIQQFELQPTTEQTHVLTQFAHFMMDEDPRVVMIFCGSAGTGKTSLASAIA RTMVKLEQRVMLLAPTGRAAKVFSVHSGQPAYTIHRQIYRQKSFDSDGGVFNLNFNRYCD TLFMVDESSMIANQGQMESSFGSGCLLDDLVQFVYSGRNCRMILMGDAAQLPPIGEEQSP ALSSDFMEGYGLKVYECRLDNVLRQSEESGILYNATLIRAHIMRDELTQLPQIHFNTFAD IVVVPGNELIETLNSSYSEVGVDETMVITRSNKRAHIYNQGIRQTILGSEEELSTGDMLM IVRNNYHWVKLPTNNEEQDTTSMTFLANGDRAMVQRVRNIRELYGFRFADVWLQFPDYND YELEATIVLDSLHTEAPALSREQNERLFNEVLADYADIPRKQDRLKKLREDIFLNAVQVK YAYAITCHKAQGGQWAHVYVDQGYMTDEMLSPDYLHWLYTAFTRATEKLYLVNWPKSQTF EKGV >gi|281305933|gb|ADEF01000015.1| GENE 80 98518 - 99000 341 160 aa, chain + ## HITS:1 COG:no KEGG:BVU_1906 NR:ns ## KEGG: BVU_1906 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 64 160 132 228 228 81 38.0 7e-15 MKVKIKHNYILTCCVGVLALICVLSIYSPIAFSNQQTERETSVKHYLVQIRLAEEKYRAK TGSYTASFDSLIQYGYLADSLQFIPFTNHQKFELETSMQLSPSGKQIPLMECRAKYTDFL QGLNKSFVQELIENELSAGRYPGLKIGDLQTPNNNAGNWE >gi|281305933|gb|ADEF01000015.1| GENE 81 98981 - 99799 462 272 aa, chain + ## HITS:1 COG:no KEGG:PRU_1992 NR:ns ## KEGG: PRU_1992 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 16 272 7 266 266 239 44.0 7e-62 MQETGNNTLISKARLVFRISPQSLSFSVVDNAEESQLAFEPYVIRSGISLAANLREAFIE SDLLNRGYQRAQVMIDAPVMLVPTEEFRQEEMECMYQHTFTGREDEAVLHAVLPNLNAVA VFSVNKDLKMVMTDHFNDVRFFPISQPVWSYLHKRSFTGSHQKLYAYFHDKKVDIFCFKQ NRFKFSNTFHVPNANDSIYFILYTWKILALDSEKDELHLVGDIPERERLSESLRRYLQKV YYVNPVAEFNRAPITMIKGISFDLITLFLKGK >gi|281305933|gb|ADEF01000015.1| GENE 82 99799 - 100377 488 192 aa, chain + ## HITS:1 COG:BMEII1038 KEGG:ns NR:ns ## COG: BMEII1038 COG0742 # Protein_GI_number: 17989383 # Func_class: L Replication, recombination and repair # Function: N6-adenine-specific methylase # Organism: Brucella melitensis # 1 168 35 208 221 100 37.0 2e-21 MRIITGKYKGRHFEIPRTFKARPTTDFAKESIFNVLNRYIDLEGKTALDLFAGTGSISLE LLSRGCAQVVSVEADRDHAKFIQQCMEKLGTQQDVLIRTDVFRFIKSCHQTFDFIFADPP YALPDLKEIPKLVLQHGLLKENGVFVFEHGKKDEFTNLPEFVEHRHYGSVNFSIFQCVQN VEEKENNHEVQP >gi|281305933|gb|ADEF01000015.1| GENE 83 100438 - 101667 901 409 aa, chain + ## HITS:1 COG:no KEGG:BVU_0479 NR:ns ## KEGG: BVU_0479 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 31 405 58 429 436 362 47.0 1e-98 MMSWHFTAQTKQCLALFLLMFFFVDVSANQIDTLQEKSKVIHRIELDVVPSTILHTNTYL KGDNIEKRTMNHAFTTQLKYAFQPPATSQQAQMYKGVYQGIGVAYHNFNPQLGNPLSVFI FQGAKVKQLTNALSLNYEWNFGLTAGWHPYHETDNPENRVIGSKITAYLNTDLYLKWQLS KQFDLNAGLSLSHFSNGNTTIPNGGLNIAGGRISLAYYIHRPTEETAILIPRPTFQRHIT YDFMLYGAWRKKGLMLGDKAVALPKTYQVGGFSFTPLYHLNPWLNVGISLDGVYDSSANL YIEDYIVEAGQPANDFEHLAQPTFTKQIALGLSGRAEFVMPYFTIQAGIGRNIINAKGEL NGWYQVLALKTNITNRLFLNIGYSLYNFQTPNHLMLGLGYHFQKKKRKH >gi|281305933|gb|ADEF01000015.1| GENE 84 101834 - 103981 1751 715 aa, chain - ## HITS:1 COG:XF1944 KEGG:ns NR:ns ## COG: XF1944 COG0339 # Protein_GI_number: 15838538 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Xylella fastidiosa 9a5c # 37 715 35 715 716 585 45.0 1e-166 MHHHFKKSILRIGMLCAAVCVGTLMSCNDKKGADLENNPLMTESTLPFGAPDFSKIKAEH YLPAIKAGIEEQRKAIKSIVENKDSATFENTILAYEKSGVLLDRVTSIFFALTSADKTPE IEKAEDEAIPLLTAFENEVSFNQPFFERVKYVYDHEYNQLKGEDKKLLEETYKGFVRSGA LLPADKKKRMEEINNRIAKLQQDFGNMLPKSTNEAAVWVDKKEDLAGLSEADIAQCKKDA ESRDKKSPYCLVITNTTQQPILTNLENRALREKVYNASIHRADGTNDFNTLPLVVEIAKL RAEKAELMGYKNYAAYSLDNTMAKNTAQVDAFLKQLISAYKPKADEETKAIEEYARKTQG TDFQLQPYDRFFYSAKMKKEKFNFSEDEVKPYFNIDSVLVNGVFYAAHRVYGISFKERTD LPTYHKDMKVFDVLDKDGKQLALFYVDYFRRPTKRGGAWMSSFAKQSKLRNQLPIIYNVC NYAKAPEGKPTLLSWDEVTTMFHEFGHALHGMLSNCEYNTLSGTAVTRDFVEMPSQFNEF FAVVPEVFANYAKHYKTQQPMPKELKEKMLNSITFHSAYALGENLAATCLDLAWHQLASN QIPTADKALAFETKALTDIGLLNPQIPPRYSTSYFNHVWGGGYAAGYYSYLWSEVLAANI ADYFESHGALKPEVGQAFRDKVLSRGNTGDLMQMFCDFTGLKAPDAKALLKARGL >gi|281305933|gb|ADEF01000015.1| GENE 85 105278 - 105676 339 132 aa, chain + ## HITS:1 COG:no KEGG:BVU_0141 NR:ns ## KEGG: BVU_0141 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 132 1 128 128 83 32.0 3e-15 MSKQQVLIERELQSNSKDRIWSIISDTDKLSRWIADEIQEEGKKLHFIWGDLQSSHDSRM ATIAKKVKYHYIRLKWTDEEDPNAFLELRMEKSNISNNYVLFITDFAEPDDIDTMEDLWA DNLDRLHQFSGL >gi|281305933|gb|ADEF01000015.1| GENE 86 106002 - 107765 1235 587 aa, chain + ## HITS:1 COG:no KEGG:PRU_1912 NR:ns ## KEGG: PRU_1912 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 580 49 628 662 657 55.0 0 MEIMAQFFWYMGLFLVPQALPLAVLLSSLITFGNLGENSELTAIKSSGISMFRTFQPLIS LTIFISFSSFYFQNYVGPKANMKLAQLILSMKQKSPELEIPEGIFYDGIPNSNLYVQKKD VETGKLYGIMIYRMTGSYEDQAIILADSGMLQSTADKKHLLLSLWSGEWFENMQSQELGG SAAIPYRRETFASKKIVLDYDGGFNLTDVAALSGDARSKSLTQLVAGIDSLNGVYDSVGR SIYKETQRMFYYIPSIDKRDSVKAVRAGLAKTFVFDTIYNKLSNDQKINVMNMALSNIQS EISELNFQSMITSDGDKMLREHRIEMIGKFTLALTCLIFFFIGAPLGAIIRKGGLGFPII ISVLVFIIYYIFENTGYRMARSGIWTVNFGKGLAPAVLIPLAAFVTYKANNDSMVLNIDT WKSALRKAFGIKTKRHINGKEVIIHDPDYIAARNQLQMMTQAIENYVSQHKLRTAPNVQK VFFKYEPDHEIEHLSELLENIIEDLSNTRDKYILNELNNYPILMTKAHTRPFDRQWLNVL SAVIVPLGLFFYLRMWRFRLTLMRDLKQIVQTNNRMIDSIDRMLQKK >gi|281305933|gb|ADEF01000015.1| GENE 87 107788 - 108999 1200 403 aa, chain + ## HITS:1 COG:BH1556_2 KEGG:ns NR:ns ## COG: BH1556_2 COG0807 # Protein_GI_number: 15614119 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Bacillus halodurans # 213 401 5 193 197 239 60.0 7e-63 MENFKLATIEEAIKDFKEGKFVIVVDDEDRENEGDLIMAAEMITPEKVNFMLKNARGVLC APITLSRCEELDLPHQVADNTSVLGTPFTVTVDKLEGCTTGVSAHDRAATILALADPTST PQTFGRPGHINPLYAQDNGVLRRCGHTEATVDLCRLAGLYPAGALMEIMNEDGSMARMPE LQKLATEWGVKIITIAELIAYRLKKESIIEVGVEVDMPTQYGSFHLIPFRQQSNGLEHMA LVKGTWSPDEPILVRVHSSCATGDIFGSQRCDCGEQLHKSMQLIEKEGKGVVIYMQQEGR GIGLMNKIAAYKLQEEGYDTVDANIHLGFKPDERDYGCGAQMLRHLGVRKMRLLTNNPVK RVGLEAYGLEITEIVPIETTPNKYNEHYLKTKQDRMGHKLHIK >gi|281305933|gb|ADEF01000015.1| GENE 88 109113 - 110306 1174 397 aa, chain + ## HITS:1 COG:SMc01578 KEGG:ns NR:ns ## COG: SMc01578 COG0436 # Protein_GI_number: 15966078 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Sinorhizobium meliloti # 1 390 1 393 400 376 48.0 1e-104 MAKLSERLNRLAPSATLAMSQKSSEMKAQGIDVINLSVGEPDFNTPDHIKTAAKEAIDEN YSKYSPVPGYPDLRKAIVDKLHRENQLDYEVAEILVSNGAKQSVCNTLMALVDEGDEVII PAPYWVSYPQMVKLAGGNPTIVKTGFAQEFKILPEQLEAAITPKTKVIILCSPSNPTGSV YSQSELEGLAHVILKHEDLYVIADEIYEHINYVGKHESIAQFPGMKERTIIVNGISKAYA MTGWRIGYIAAPEWIVKGCNKLQGQYTSGPCSISQRAAIAAYTQSQACVEEMRQAFQRRR DLIVKLAKDIHGLEVIEPNGAFYLFPKCNYFFGKSTDGYYIQNSTDLSMYLLEKAHVATV GGDAFGEPNCLRMSYATSDENIQEALRRIKNALEQLQ >gi|281305933|gb|ADEF01000015.1| GENE 89 110525 - 111346 675 273 aa, chain + ## HITS:1 COG:FN1834 KEGG:ns NR:ns ## COG: FN1834 COG0811 # Protein_GI_number: 19705139 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Fusobacterium nucleatum # 96 268 21 187 187 72 28.0 1e-12 MATTKAAPQKKSQGFQGVRHAFIIIILAFIVGWAFYNFILGDPSNFANGDREGHPLNMLG TVYKGGWVVPIIFGLLCTVIAMSVERLLAISACSGKGSVIKFTENVKAALRNGDIAKAEE LCHKQKGSVANVVLADLKSYREMENSSIKLKEKINTIQNSHDEATALEMPTMTMNLPIIA TVVTLGTLTALFGTVLGMIRSFAALAAGGGADSMALSTGISEALVNTASGIATSWVSVVS YNYFTNKIDKLTFAMDEIGYTIAHTFEEKHPEA >gi|281305933|gb|ADEF01000015.1| GENE 90 111378 - 111998 685 206 aa, chain + ## HITS:1 COG:no KEGG:PRU_1916 NR:ns ## KEGG: PRU_1916 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 200 1 198 205 213 56.0 3e-54 MGKLKVKKHDVWIDMTPMSDVMVLLLTFFMLTSTFVKNEPVKVNQPSSVSEIKVPENDVL NIVVDKAGKVFMSMDNQNDLLSLIQGMNETSSIGLTNQEMMKFQADPMWGVPLNSLKGYL GLPNEKMTEVITGAEAGVPLDSIDGGKSEFQLWVTEALNVNEDIKIAIKADADTPYAKIK KLMSELQDMNQNRYYLITSLKTGEDK >gi|281305933|gb|ADEF01000015.1| GENE 91 112001 - 112639 576 212 aa, chain + ## HITS:1 COG:no KEGG:PRU_1917 NR:ns ## KEGG: PRU_1917 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 5 212 4 221 221 208 57.0 1e-52 MANSKDTSKQKKINVRVDFTPMVDMMMLLITFFMLCTSLAKPQTMELSMPSNDKNMTDQD KSVTKASYTITIYVAGNNKIYYVAGLPKYDDPSTLKETTWGKDGIRKVLIQHTTEDNTQP VLEVMKAKAELDLKKEQMPDSVYSKELSQIKRGEINGQKIQTMTVIIKATDKASYKNVVD ALDEMQICSIGKYVLDKISKDDEKLLKAKGVE >gi|281305933|gb|ADEF01000015.1| GENE 92 112675 - 113511 840 278 aa, chain + ## HITS:1 COG:no KEGG:PRU_1918 NR:ns ## KEGG: PRU_1918 # Name: not_defined # Def: TonB family protein # Organism: P.ruminicola # Pathway: not_defined # 1 278 1 277 277 289 61.0 7e-77 MSKIDLISGDWTDIVFAGRNQSYGAYQLRKGTGKRNVISILAVVVLVLLCQVGLTIKKAA DAEAKRRAAMTEVVELSKLEQPKKKAEVKQTKKVQVEPEKVVERVKSSIKFTAPVIKKDN EVKPEEELKTQDDLMSSKTAIGAIDVKGNDDKGGEVLKLKEAVAQPEPKPEVENKVFDVV EQMPSFPGGPSALMNYLRDNVKYPVVAQENGVQGRVVVSFVVERDGHITDVKVVRSVDPS LDKEAARVVRSMPAWIPGKQNGSAVRVKYNVPVSFKLQ >gi|281305933|gb|ADEF01000015.1| GENE 93 113513 - 114478 440 321 aa, chain + ## HITS:1 COG:MA0887 KEGG:ns NR:ns ## COG: MA0887 COG0226 # Protein_GI_number: 20089771 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Methanosarcina acetivorans str.C2A # 39 306 67 314 317 83 25.0 7e-16 MKRNISYTLVGLTLITCLLVSCKNKKPKDGRTDTYSSGAITFASDESFSPVIEEERELFE FTYPDAKLTPIYTNESEAINKLLKGEVWMVITSRDFKKEELESLKARKQFPRSVRFAYDG LALIQNISNTDSCISVDNIKDILNGKIKHWNQIYPKSKIGEITIVFDNPNSSAVHFVEDS ILGGKPILNKNVAAVKKTAEVIKYVEENKGAIGIIGSNWLNDKRDTTNLTFKKEIRPMAV SSVPIANVQNSWKPYQYYIFNGSYPLARTLYILLNDTHMGLPTGFSNFIISQDKGQKIIL KTGLLPAYGNLTVRNVRVSNE >gi|281305933|gb|ADEF01000015.1| GENE 94 114530 - 115948 1400 472 aa, chain + ## HITS:1 COG:no KEGG:BF3942 NR:ns ## KEGG: BF3942 # Name: not_defined # Def: TPR repeat-containing protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 469 1 473 477 241 35.0 5e-62 MKKIKYVLAGVLLMSMSAPVIAQSEDQVAIKQAMEIIKSTKNDVEKALKPIYKANKKNPA VLVGIGRAFLDQKNTEMAMKYANLAMERDKKYAPAYILAGDVEVLKDDGGAAAGWYQQAK YFDPKNPDAYFKYANILRGRSPEEAVSNLNDLRTQRPDIAVDALAARIYYNSNMLDKSMQ YYEKVDKSKLENVDITNYAMAGYLSQKRQKSLDMALYGLKKNPRYAAWNRIAFYNYTDEG QIQDALKYADRLFNASDSAVISGYDYTYYGQAYLGDKQYDNAIKMFEKALDANKENAELL NNNKKGLSDAYLGKGDFANAIKYYEDYLAKVQKPSATDLAGLGSIYTTMAASQTGEEQKT TYRKADEVYKQLGEKFPANIDFANFLRARVNSNLDPETKQGLAKPFYEALAKSLSEKENR DNVDNTRLIEAYRYLGYYYLLKENKATADSYWKKVLELDPTNEVAKQALGMK >gi|281305933|gb|ADEF01000015.1| GENE 95 116248 - 116418 129 56 aa, chain - ## HITS:1 COG:MA3446 KEGG:ns NR:ns ## COG: MA3446 COG2768 # Protein_GI_number: 20092258 # Func_class: R General function prediction only # Function: Uncharacterized Fe-S center protein # Organism: Methanosarcina acetivorans str.C2A # 3 54 181 233 360 58 49.0 4e-09 MAYVIGNDCIACGTCIDECPVGAISEGEIYSINPDTCTECGTCSEVCPSEAISLPE >gi|281305933|gb|ADEF01000015.1| GENE 96 117264 - 117401 106 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNLVKTHNMLMSVDLLSMFNLLLKQKHIIILVTSDLLLINESCGY >gi|281305933|gb|ADEF01000015.1| GENE 97 118305 - 119054 593 249 aa, chain + ## HITS:1 COG:no KEGG:PRU_1922 NR:ns ## KEGG: PRU_1922 # Name: not_defined # Def: PorT protein # Organism: P.ruminicola # Pathway: not_defined # 1 249 1 235 235 230 44.0 3e-59 MKKTVLCTILFAASWVQCVAQIDRVVQNRPYADLRPLHFGVLLGTHVQDVELNNVGIQHL THEDGSVSERLITVDQDRWDAGLTVGVLAEMRLSKYFQFRIAPAMYFGNRHLTFRDYSML DKKGMPTEQQQDMKTAYVSSALDVIFAAPRFNNHRPYLVTGVNPMINLNGKNDQFVALKR YDVFAEIGVGCDFYLQYFKLRPELKFMFGLTNSYDKNHIKGIKDKNMIPYTNATNEARSK MIVLTFYFE >gi|281305933|gb|ADEF01000015.1| GENE 98 119185 - 120030 248 281 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145635642|ref|ZP_01791339.1| 30S ribosomal protein S16 [Haemophilus influenzae PittAA] # 4 278 15 302 603 100 29 6e-20 MKNYRYILVSVLLCLGTTLVAQNKSLTILHTNDTHSCIYPLNPNLADTMLAGRGGFIRRI KMLKEERKKDPQLLLFDSGDFSQGSPYYTLYQGEVEAKLMNEMKYDAGVLGNHEFDFGMD NLARLIKQLNYPVVCSNYDFTGTVCEGLVKPYIILKRKGIKIGVFGLSPEMEGLVDLKKC EGVKYLDPIKVGQQMASLLKDKYKCDLVICLSHMGWLKKGMSEQRIIAHTRGIDLLLGGH SHTYFQSLRYVKNLDGKEIPVDQNGKHAIYVGKLLLQFKKK >gi|281305933|gb|ADEF01000015.1| GENE 99 120058 - 120822 519 254 aa, chain - ## HITS:1 COG:TM1878 KEGG:ns NR:ns ## COG: TM1878 COG0737 # Protein_GI_number: 15644621 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Thermotoga maritima # 40 211 311 470 508 89 33.0 5e-18 MRKTKLLFELAFISLIATSCVSHYQLTSVQRTRILVDHRYDSIRNEKVDAMMRPYKNHVD SIMSPVVGRVKRNMSVGRPESTLSNLLSDILVWGGRAFHETPDFAVYNMGGIRAALVKGD VTRGDVVDVAPFENKLCFLTLTGEQVLELFKQIASVGGEGVSHGVELRITRDGQLKSALV HGKPIDPQRLYRIATLDYLAQGNDKLVAFKKKTQVLSPQDKKNNVRFIIMDYFQQANAQG LEVDATIEGRIVVE >gi|281305933|gb|ADEF01000015.1| GENE 100 121386 - 121745 507 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150002754|ref|YP_001297498.1| 50S ribosomal protein L19 [Bacteroides vulgatus ATCC 8482] # 1 114 1 114 117 199 87 5e-50 MDLIKVAEEAFATDKKFPEFKAGDTITVAYKIVEGTKERIQLYRGVVIKISGHGDKKRFT VRKMSGTVGVERIFPIESPSIDSIEVNKRGKVRRAKLYYLRNLTGKKARIQERRTASSK >gi|281305933|gb|ADEF01000015.1| GENE 101 121817 - 122125 280 102 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880160|ref|ZP_06288880.1| ## NR: gi|282880160|ref|ZP_06288880.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 102 2 103 103 170 100.0 3e-41 MLHDIKHLLEEMEAKVGKSASNLLTEDEKIVHILTKHVLCKNLSCVQKAWDCLKRKEKPS DATLDKLALLAGFQNWKDLKIALHGENSAELNYDDEEEIAKK >gi|281305933|gb|ADEF01000015.1| GENE 102 122153 - 122290 76 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQNLYFIHPLVVSHLNTLPFSLNTQMNKQNYKKNMNKNKYRTAIN >gi|281305933|gb|ADEF01000015.1| GENE 103 122283 - 122402 58 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIYKSAGIKKVHFLYRKNIKRKLFCQAIFWLLAFLNCFS >gi|281305933|gb|ADEF01000015.1| GENE 104 122445 - 123626 1158 393 aa, chain + ## HITS:1 COG:CAC2445 KEGG:ns NR:ns ## COG: CAC2445 COG0138 # Protein_GI_number: 15895710 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Clostridium acetobutylicum # 3 393 5 391 391 523 63.0 1e-148 MKELALKYGCNPNQKPSRIYMEEGELPIEVLNGRPGYINFLDALNSWQLVKELKAATSLP AAASFKHVSPAGAAIGLPLSDTLKKIYFVDDVDFELSPLACAYARARGADRMCSYGDFVA LSDTCDAATALLIKREVSDGVIAPDYTPEALEILRDKRKGTYNVIKIDPTYQPNPIEHKQ VFGITFEQGRNEVKLNDDRLFENIPTEQQSLPENAKRDLIIALITLKYTQSNSVCYVKDG QAIGIGAGQQSRIHCTRLAGDKADTWWLRQCPKVMNLPFKEHIRRADRDNAIDLYIGNEA DDLLKDGAWEPIFTKKPEPLTQEEKKEWLCQNTQVALGSDAFFPFGDNIERAHKSGVQYI AQAGGSVRDDHVIETCNKYGITMAFTGVRLFHH >gi|281305933|gb|ADEF01000015.1| GENE 105 123711 - 123905 290 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880162|ref|ZP_06288882.1| ## NR: gi|282880162|ref|ZP_06288882.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 64 1 64 64 77 100.0 2e-13 MDDFDDILENGIVFRKPPKEKKEDGKIKTKAKKKKYITGAHGSGSARQKAKYRTQRANRH KGKA >gi|281305933|gb|ADEF01000015.1| GENE 106 123922 - 125082 963 386 aa, chain - ## HITS:1 COG:NMB0315 KEGG:ns NR:ns ## COG: NMB0315 COG0739 # Protein_GI_number: 15676232 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Neisseria meningitidis MC58 # 242 351 271 387 430 88 40.0 2e-17 MCLQNSNEMKFPLRKLILSVASVMSLSAFAPDSEQFTPAERQQVSIATPHLFDKSDYFYI DFKKLTSTDYCFPLPVGKSILLPQQELEIRTTKGDAVKAMFEGTVRLSKRNAAQIPVLVI RHKNGLETVYSHQVQNLVKVGEHVRAGQTIAIIGERAGRSFLRFSIMVNGARINPAIILS PASHQLHAQLLQFKKVGHRIDVKVVTEEQQRAEVDPENPFRNGNSFQLNLSEVKKTGQWA YPLPCAKVISPYGGRRGHGGVDLKTKPNDKIVAAFDGVVTLSGPHYGYGNCIKIKHKYGF ETLYSHQSKNFVKVGQKVKAGEVIGLTGRTGRATTAHLHFEITYRGRRYNPNILFDHAKR SLQDVTLTLTKSGKITSKRNNTNAPK >gi|281305933|gb|ADEF01000015.1| GENE 107 125124 - 125975 474 283 aa, chain - ## HITS:1 COG:VC0710 KEGG:ns NR:ns ## COG: VC0710 COG1496 # Protein_GI_number: 15640729 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Vibrio cholerae # 36 283 10 240 240 143 36.0 5e-34 MTFKTSKTWKIMSTKMSDAQQKDLPTPLLTYFPLHKQVKVFSTTRSGGVSKGCYSSFNIN PYCGDEPKAIQSNRTALCTELQLSADRLLLPHQVHGVETRVIEKDFFSLSPSTQHLLLEG VDALITSVPQVCIGVSTADCIPVLLYDTKHHAIAAIHAGWRGTVQRIVQHTLSMMRQVYD TSAADVYACIGPGISLKNFEVGDEVFERFAKAGFPLSSISVKKTKWHLDLPECNRLQLIE EGVKAHHILQTDICTYDQIDQYFSARRLGVASGRIYNGILLNE >gi|281305933|gb|ADEF01000015.1| GENE 108 125923 - 127089 715 388 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915191|ref|ZP_01903719.1| 50S ribosomal protein L27 [Roseobacter sp. AzwK-3b] # 5 341 3 338 345 280 45 4e-74 MESNFVDYVKIYCRSGKGGRGSMHLRHVKYNYNGGPDGGDGGKGGSIYLRGNHNYWTLLH LRYDRHIFAEHGGNGGKDKCHGTDGKDIYIDVPCGTVVYNAENGKFICDVTEHGQEVLLL KGGRGGLGNFQFRTATNQAPRYAQPGEPMQEMTVILELKLLADVGLVGFPNAGKSTLVSS LSSARPKIANYPFTTLEPSLGIVEYRDHHSFVMADIPGIIEGASEGKGLGLRFLRHIERN SLLLFMVPGDTDDIKKEYEILLNELRTFNPDMMDKHRVLAVTKCDLLDQELIEMLHDTLP TDLPVVFISAVTGQGLDELKDVLWKELNSESNKLQGIIAEDNLIHRDKEMDKMASELIAE GEVEEITPIDDNDIQDIEDLEDYEYEDV >gi|281305933|gb|ADEF01000015.1| GENE 109 127189 - 127761 600 190 aa, chain - ## HITS:1 COG:XF0275 KEGG:ns NR:ns ## COG: XF0275 COG0563 # Protein_GI_number: 15836880 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Xylella fastidiosa 9a5c # 1 183 11 192 198 154 44.0 8e-38 MRNIVIFGAPGSGKGTQSDKLIEKFGLEHISTGDVLRSEIKNGTDLGNTAKGFIDKGQLI PDELMIDILASVYDSFGKNHKGVIFDGFPRTIPQAEALKEMLAKRGHHVAAMIELDVPED ELMKRLLLRGQQSGRSDDNEETIKKRLGVYHAQTAPLIEWYKQEAIHHHIDGLGELDRIT ADICAVVEAL >gi|281305933|gb|ADEF01000015.1| GENE 110 127758 - 128297 628 179 aa, chain - ## HITS:1 COG:STM0170 KEGG:ns NR:ns ## COG: STM0170 COG0634 # Protein_GI_number: 16763560 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Salmonella typhimurium LT2 # 10 170 4 167 178 133 41.0 2e-31 MSEVTIKDKTFKTFIPEADLLCRVKEVANQISRDFEGKNPLLLAVLNGSFIFAADLMRYI TIPCEISFVKLASYQGIASTGEIKEVIGLNEDITNRAVIIVEDIVDTGATMKRMIEKLGT RSPASLDICTLLLKPGKLKAPLNIKYVAMEIPNDFIVGYGLDYDQLGRNLRDIYTIVEE >gi|281305933|gb|ADEF01000015.1| GENE 111 128787 - 130310 470 507 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153833204|ref|ZP_01985871.1| ribosomal protein S15 [Vibrio harveyi HY01] # 1 499 7 505 512 185 28 1e-45 MKILTSAQIQELDDYTIAHESIKSIDLMERAAQALSRAIMNSWKTTSPMVVFAGPGNNGG DALAVARILAENGYSIDVYLFNISNKLSENCAINRDRLKNHPKITKFTEVTLNFEPPTLE ANTVVIDGLFGAGLNKPLTGGFASLVKYINQSPCKVVSIDMPSGLLPENNTFNVRTNIVK ADVTLTLQHKKLSMMMADMQPYIGQVKVLDIQLSEAFTQQIDAKYNIVEEHEVVEKLLTR SEFVHKGDMGHALLVAGSYGMAGAATLATQACLRVGVGKVTTHIPKHLLNILQISVPEAI VSVDPEKEYFTEPVDTDPFDALGIGSGLGQHENSAIAMIAQVRRAQCPIVVDADALNMLG THRAWMQQLPKNIILTPHPKEFDRLIGNTSADSYERLAKACELAGRLHGFVLLKGHYTAL CQPNGKVFFNSTGNGGMATAGCGDVLTGIITGLLARRYRHADACIVGMYLHGLAGDLAAQ EMGKESMIAGDIIRWLPQAFKKLQALH >gi|281305933|gb|ADEF01000015.1| GENE 112 130349 - 131395 962 348 aa, chain + ## HITS:1 COG:no KEGG:PRU_2866 NR:ns ## KEGG: PRU_2866 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 22 345 31 356 360 242 45.0 1e-62 MKKTFLSTLFLALNITALWAQIPTEGVTYFLPKTALRFAVLVEKTTFTPGKYARFSERYL KTPVKDTPTTTYRIVGTKMNIYAVPDSSKLFTATIDKKHSIISVSRDQNGVIMAVNSEPM PVQKGTSFQPAPKPLAIDPAKYMTAEILAAGSNAKTAELIAQEIYDIRDSKNQLSRGEAD FMPKDGEQLRIMLDNLNTQEKAMLQFFQGTTITDTLETIVDYVPVKGTEHDLLFRFSKYL GMVDKDDLGGTPYYISIKDEEIIPALSLPDENAKKDKNNVGINVNLPGKINITLSKEEQP LSSFETYAAQFGRIENISGRLWGKKFTTHLVLNPVTGNVENIKIEALD >gi|281305933|gb|ADEF01000015.1| GENE 113 131522 - 132532 1115 336 aa, chain + ## HITS:1 COG:TP0662 KEGG:ns NR:ns ## COG: TP0662 COG0191 # Protein_GI_number: 15639649 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Treponema pallidum # 1 331 1 331 332 467 69.0 1e-131 MVDYKSLGLVNTREMFKRAIKGGYAIPAFNFNNMEQLQAIIKASSDQKSPVILQVSKGAR QYANQTLLRYMAQGAVEYAKELGCKHPEIALHLDHGDSFETCKSCVDYGFSSVMIDGSSL PYEENIALTKKVVEYAHQFDVTVEGELGVLAGVEDDVVAEESHYTKPEEVIDFVSRTGVD SLAISIGTSHGAYKFKPEQCTRDPKTGLLVPPPLAFNVLDEIMEKLPGFPIVLHGSSSVP QEYVKIINENGGKLPDAVGIPEEQLRKAAKSAVCKINIDSDSRLAFTAAVRKVFNEKPGE FDPRKYCGPARDLMTELYTHKIVNVLGSNNKLAQLD >gi|281305933|gb|ADEF01000015.1| GENE 114 132795 - 132908 67 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLSFGFFLVQNASSFSRVARYTPSLSYIFDLKNKHKI >gi|281305933|gb|ADEF01000015.1| GENE 115 132972 - 134144 816 390 aa, chain + ## HITS:1 COG:xylR_1 KEGG:ns NR:ns ## COG: xylR_1 COG1609 # Protein_GI_number: 16131440 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Escherichia coli K12 # 3 263 7 265 265 85 25.0 2e-16 MVRLIFLSDFTEAYAHHLLQGILTYAKQKDQEAWVVCRMPPSYKETYGIKGVVEWAKKWE ANAIIGRFNHDDDIDLFRRNGIIAIAQDFKRRFNNIPNITSNYHDTGRLAAQFFIEKGYK HFAFYGYKDTVWSDERCEGFYEGIKEAGYSKNFYTYTNQQLETLWYYDTTPLLNWLNQLP QQTAVFCCDDNQGNKITEICKSNRIQIPEHLAVLGVDNDTTLCELSDPPLSSIHLDIEAG GYETAELIMNLMKQKDFQPQDVIIKAISIINRSSTNSFATNDIYINEALEFIHSNLDKAL NVTDLVKKLPLSRRLLEMRFKKVTGRSVYNYIIYNRIEEFARKIHETDKPINEIATEMEF YNYSNLVQQFKQIKGCTPTEFRKRNKAYDL >gi|281305933|gb|ADEF01000015.1| GENE 116 135078 - 138287 1855 1069 aa, chain + ## HITS:1 COG:no KEGG:Dfer_2245 NR:ns ## KEGG: Dfer_2245 # Name: not_defined # Def: TonB-dependent receptor # Organism: D.fermentans # Pathway: not_defined # 44 1069 40 1040 1040 639 38.0 0 MKKFIFSVGNKNKLFKVTALTALTLCLPAMASAYNANANKVEMSQQKADHITGTVTDTNG EPIIGATIKIVGSSNGTVTDVNGKFTLNAIQNTILHVSSVGFAPKEVKVVGSSLNIVLKE DTNMLSEVVAIGYGNQRKQDLSTAVASVKIDQSMKSRPSNLASMLQGSMPGVMVQNNGGD PLSEASLSIRGRGSRGTDHSYNSGDGVLYIVDGVPGAPYNIEDIETITVLKDAASAAIYG ASVGSGGVVVITTKQAKEGKIKVNFNISKSIKSAINLPTTLTAEQYNKVWADAVKIYGGK LPSTANPAIYPYGNVTRTDWVDAIFRKGYLEHYAISFSGGAGNLKGFASISYDKDTGILN NTFANKLGSKGNIDFQINKWLKLSEQVTYQLTNGQGNIGTGHEGVLPNAIFFPRSATLYD TDEEGNILYDEYKHPLYHGTTPRWAAAKGISGYGEFRNPLAMLQRLDQKRPTHKLFSTTS LELKPITALTLKSQFTSGLIDTEFDEFIHKIPEPGNQSEENRHNIEHSRLSNWLWENTAT YAEVFGKHHLSVMAGFTMKYDKYKSYGIYTTGYDQEDRHSSTLGQASDWSKYKPSENLWE ESMMSFFGRIGYSWKDRYFATASVRRDATSKLYKNNNSGIFPALSGSWKISSEPFFAPIK NIVSLFKLRASWGQVGNVALVPRYSWNVPLGTTEWPIIYGKNLDNIVYGTYAESIGTKNL KWETTEQWGVGLDLGLFNNELSLTIDYFNKHTKDLIEKVPVTSVAGIAVEPYGNVGNVVN KGWEFGANYQKKIHGFTFGLNANLATVHNEVLDLGARSTLEHDVVINSQRPLRSTVGHPW YSFYVLKTNGIFQTQDEINNYKWTDPKTGISNIIQPNAKPGDLKYVDFNNDGKINADDNQ YMGSYMPKITFGFGGNASYKGVDFSIQFQGVGLSTIYNGFKQMTLTGRQQGGNMLSSILN AWDYDKTSGIPRLALISDPNGNFTNPSDFYLENGSYLRLKNITVGYTCPKSVTQLLGFTN TTIRFYLNCENLLTITDYTGIDPEVGNFGIDAGTYPISRSFNFGLNFNF >gi|281305933|gb|ADEF01000015.1| GENE 117 138310 - 139905 1045 531 aa, chain + ## HITS:1 COG:no KEGG:Cpin_0005 NR:ns ## KEGG: Cpin_0005 # Name: not_defined # Def: RagB/SusD domain protein # Organism: C.pinensis # Pathway: not_defined # 3 531 5 503 504 372 41.0 1e-101 MNIRNITFAILLTVLASSCNDFLEFDPYGLQGSVNFWKTESDVDKALNAFHEFTYKEGVT GRGFMWFENCSDNIVTGRPQAEAAQIKNFQMSASNGRDAKDNWPYMYQLIAKANDVLRNV PEMNISNTKKDNAIGQALFYRAFAYLWLAPFYGDNGPNGGIPIVTEKTPTAELDQPRPSS VLVNYDMIIQDMEQAASLLPYFSELPESEYGRPHKAAAWAFAARAALYAAQFNSKYYDKV IALCDKVINMSGKDKRGLYPNYAQLFRPENNFCQEYIFSLLGNAKEGPKFHGMSFQNGGW GYFNTWGYFQPTLELYKAYEKNDQRRDATILYPGQHIQFIGHDIQLGVNPREISSTSGML FKKFMTPFESADCIGKTLNPSGNNASNTLGVTLIRYADIILMKAEALIWTKGEGNSEAIG LINQIRQRAGLPLNSHATKAQLKNERRCELAFEFQPSRHLDLVRWGDAKTAYAKPLHGII SSTDGMKITSIQECEIWPARNFDPVKNQVFPIPDSEVKKSNGGNLKQNKGY >gi|281305933|gb|ADEF01000015.1| GENE 118 139917 - 140720 374 267 aa, chain + ## HITS:1 COG:no KEGG:RB11105 NR:ns ## KEGG: RB11105 # Name: not_defined # Def: hypothetical protein # Organism: R.baltica # Pathway: not_defined # 4 267 30 284 286 87 29.0 5e-16 MKKILLGILLLCVIPIYAQETVKVITFNVRSFEPDFDTKPYADLLKGEQADFICLNEVEN RSSRQQKNGKFRDVVQELALNLHMFGTFGYSYNLSNKQGEYPEANYKYCMNELYGNAILS RYPIMNVISKQLPRPKGSADQRSVIAADVLLPSGKTIRIISTHLDHIGGQLEQAKVITSD EITSSTLPTILTGDMNQGVGSSVINQYLTRYERMDNDNGTYMGMSKIDFIFGSKGQWNLQ SCKVLERFLNQKELSDHCPVLSILQLK >gi|281305933|gb|ADEF01000015.1| GENE 119 140730 - 141521 444 263 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880175|ref|ZP_06288895.1| ## NR: gi|282880175|ref|ZP_06288895.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 263 1 263 263 478 100.0 1e-133 MKIQYIAIAFGCLLLSSCIKEEWGVIPNNQSIEEKKEWDKNKTVDFYFISELKDKPIENY GEVSNYINNNDKKISIAVVDRSDVINYSQVYNAQVGTTILAVNTNRFSSFAFQRYAGVNI EGSTILFNHKINEEKSIHISSECNLKYLPIMTKTNVEKPLDILVPFSTIRFNTSKQIRTA APILNSFASKEKNIIIGTVKSNIVDELNELAKNIVGYNLSIACKNTDYAIFVLAPASWVL RETVPESIGKLTAYKISIEASVE >gi|281305933|gb|ADEF01000015.1| GENE 120 141590 - 142717 919 375 aa, chain + ## HITS:1 COG:TM0156 KEGG:ns NR:ns ## COG: TM0156 COG1785 # Protein_GI_number: 15642930 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Thermotoga maritima # 47 324 20 308 434 183 38.0 4e-46 MKIQLSIILYLLLGSIHYGFAQNTNLQTYTMEHPYKVEKLKAPKGKKVKNVILMIGDGMS LMDVYAAWVCNRGRLWLDNAQYIGLSATHCTDKLITDSGAGGTALATGYKTKYHAVGVDP EGKPLTTIIDLAKRKGKDAGIAVTCRLWDATPADFCCHNINRDNEQEIVADYPTSGVDFA FGGGAKYFTNRKDGRNIFDELKNQGYYIARTWEKLEKWKSGKVFCVPYEVDTPLPDERGD LLARATMKGISLMNQNKNGFFMMVEGSQLDDYGHFNQLDMLMKELHDFDRTIGEVMKWAA KDGETLVVVTADHETGGLTLHGGDLATGRIEAKFASTGHTGVMVPVYAFGPGAEEFTGFM DNTEIFWKIKKLMRL >gi|281305933|gb|ADEF01000015.1| GENE 121 142863 - 144476 1170 537 aa, chain + ## HITS:1 COG:BB0381 KEGG:ns NR:ns ## COG: BB0381 COG1626 # Protein_GI_number: 15594726 # Func_class: G Carbohydrate transport and metabolism # Function: Neutral trehalase # Organism: Borrelia burgdorferi # 129 481 63 416 475 119 25.0 1e-26 MLKKLNQLLFFLGIMLPLNMMAQNLISSGSPLYKLPYKNTYVMETLVAENTFRTAKVEKT QPGTFAQAKKVLPSPYWEGHNKEIEMYWKAWEIGIKNICQPLDDSGFVTSYIAPAYNGNI FMWDNAFITMFCRYGKNFFPFQKSLDNFYAKQHPDGFICREIRADGSDCFGRYDPTSTGP NILPWSEWLYYTQFGDDNRLNKVFPVLAAYYKWLKLNRTWRNGTYWSSGWGTGMDNMPRV QDGYNTIYSHGHMIWLDACLQQIMVAKILLKMGFYLERWQEIETFEDDIKHLSQYINDNM WSEKDGFLYDQYADNSLSTTQGIYAYWALHTDVLSKERLDKLVAHLTDTTKFNRPHRVPS LSHSHPKYKANGRYWVGGVWPGTNYMIISGLIDKGYRQLAWDITMNHYNNVLEVYKKTGT FFEYYAPESNNPGFMARKDFVGWTGLPPIAELIEYIFGIRANHEQNTITIDVNLLDAYGI DKYPYGQDGLISFKVQKRNSKEEKPKVTIQTNVPFKVILLWSDKKLEQQVGVSKHSL >gi|281305933|gb|ADEF01000015.1| GENE 122 144503 - 145342 241 279 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 9 279 6 316 319 97 26 4e-19 MYQTMTTRIAIDLGGTNLRAARVRNGQIEASLQEPCLANGTQNEVLEQIIQMITRLNQSS VERIGIAVPSIVDYKKGIVYHVQNIPSWTEVHLKEILEQRFNLETRVDNDVNCFVAAENV LGAGQPFRDFVGITLGTGIGAGIVINKEVYRGVHTGAGEIGCIPYLDSIYEDYTSSQLFN KWHTTGQQEALKAAQGDQAALEKWKELGFHLGKLLQVILYAYNPEAIIIGGGISLSHSLF EQSMYESTHEKFLFPKEAEGVQIIFSKLKDSNILGAAQL >gi|281305933|gb|ADEF01000015.1| GENE 123 145373 - 146827 1217 484 aa, chain + ## HITS:1 COG:CAC1961 KEGG:ns NR:ns ## COG: CAC1961 COG1409 # Protein_GI_number: 15895233 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 9 309 20 318 324 132 30.0 1e-30 MKKSLFLSLLLTFLTTFNAWSQQSFRFHDGKFRIAQFTDIHWDAKSANCKQTSAIIQKVI QTEKPDIAILTGDIVTEQPAAEGWKSIIQIFENSHLPFVVVMGNHDAEVMSKKEIYQQLT ASSYYAGCIGATNITGYGNCSIPIYSSNKSSDQPAALIYCIDSNDYQPIKEYGAYDWIHF DQIQWYRTESKKYTQANGNKPLPALAFFHIPLVEFKHVVARNDYLGGYGDGEVCSSNINS GMFASFIDMKDVMGVFCGHDHDNDLIGMEYDIALGYGRVSGLDAYGKVDRGGRIIELYEG QRKFDTWVRTANKKEDTFYYPSALTSKDERIMNYLPAKPVKPSKQGVAYTYFEGKIKHTK DIHTLKKVESGTMKNLSISNAKQNDHFAYIFRAYIQIRERGVYRFYTYSDDGSKLLIDNQ LVVDNDGGHSARRAEGKVALEPGFHEIEVRYFEDYMGQELEVGYASRNITERPLPDNILF LPQP >gi|281305933|gb|ADEF01000015.1| GENE 124 146929 - 151218 3725 1429 aa, chain - ## HITS:1 COG:no KEGG:Amuc_0216 NR:ns ## KEGG: Amuc_0216 # Name: not_defined # Def: hypothetical protein # Organism: A.muciniphila # Pathway: not_defined # 249 1091 18 841 845 599 41.0 1e-169 MIQKTLLLFTLMVSLFALHGSAEVLQPSTTLPADGCPEHLYTITNGNGYSMNALTAPTQT DANCGLFAFYAVDGKTGSYYIYSFGAKKWLTYTVGASYGTGTAFVTLSEQKNEHCYFVTS PVGNSSYEFSPVTAQGDKAALYLNWFQGIGASNPLDGKVSVGLWTDGGNRDNGSKWNIKE MVRHSYTVKVTGAEKIQIKGENYVSGDVYTTLQPLQQSDIVAPRQTGKFAVISIDDASHR ITVAYANTPVQPAVVPYANAVVYPAQQNNVGVAVVTEENGVYTLSNNVLAASFMKVDGRL YFAGCKAMNLQPGTELFVVAFGNGVRVPASAMKLRSVELVNLPANPQAVGGAEHYPGKAL VAKYEYQFGDAILQTVWKAVLRDGSHYLRSEMELTGLGNVDMHSVTPLLYIVDTKAAGSV PQVVGNTRGAVILSNQLFAGLENPVGYNTVGNAVGSDHAYELVSNKEENLQVASWLQVDE ARLPMRVIEATGAAYPQVSAYTMHDIVLKKNQKVSVTVNYTGGSHRLNLGGADLLDAHGD VTASDYHKGYTGSTEKDNAFSFIAPYDGIFDLRVFAETKTETITATSKLTAAIFSPKEKI VAQQDLVPIQGLWSRNTTLKNGETWKISSVVGLVAQDGQQANNDINKTQKRRSFLAYSER ERAVPWHSNPVYISWYELNIDRNNALDPTGNMKASQVLNILNQWKEKLYDRYGVAPNSFV IDDGWDNYGTWTFHAGFPNEMRDIAAKAATMGAGVGAWLGPVGGYGQSGEYRRNYWKDKG GMVLSNPTYYKVFLDAATNLTQNNGNFNFFKFDGISAQFSATGPDKGDVGNENAEGIIRL ERYVREKLKRDIFFNTTVGIWASPFWYHFTDATWRQEGDYGTIGNNAIDRENWITYRDRL VYQNYVASSPLCPINTLMTHGFILTSFGQVSKNMDYEACRRELRCAFACGSGMVELYNDY ALMNNIADGKLWSDLAECIQWQKRNADVLPDIHWVGGNPWNGVKTAVYGWAAWNGTKSVL TLRNGGNDEQTYQFTLREALNIPANVSGSVVLRKSFGEQAALNGLQEGVPVDIDRLLIVK LPGSSVYSFEGLDASVSAVNVTSIALVAERDNRQVEVGKTFVLRTNVLPTDATYPVCVWT SSETETATVYNGCVKGLKPGKVMIKAVALDGSDVEKDIEIEVVKATIGELPPYAVNFDKQ TQPVNTQRHLNAILLTADNDTPQTVTIGSRMPYVDLTADDAQRFVCKAGATLTVKFDYAG AWMHGYVYVDEDHDKQFSFVEGNTNQQGSELRAFSFYSGNAFQDGAGVNSLGENISGNAR NVLNPPSFTAPKKTGDYRMRFKIDWNSVDAGGRKAADGTCTGDNGILTNGGVIVDAILQV KNDLTDIEQVETDSVGQPVFYDLHGRRLEKAPVHGVYIQKGNSAKKIAK >gi|281305933|gb|ADEF01000015.1| GENE 125 151383 - 152675 1408 430 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880181|ref|ZP_06288901.1| ## NR: gi|282880181|ref|ZP_06288901.1| hypothetical protein HMPREF9019_2009 [Prevotella timonensis CRIS 5C-B1] # 1 430 1 430 430 837 100.0 0 MRKTLLLLAMFVAFCSAQGFAADLEASTTLPTAGTPEHVFTIKSAKGTHMNGQTCPTNTY DKYGKFAFYAVEGKDNAYYIYSTTESKWITYEAADEYEGGKAFVTLGAEKVDACYFFASK TDDGAYDFAPATAGGDKAEQYLNWYGGVGEQTPLNGTVTVGLWKDPARVDPGSKWVLTLE ADEPNPNPVDGDFKVNFGKEIDPVNTDRKVTGFSVAGTETAEQTVAIESIKPYVNLMEGS SKTVITCKRSEELTVKFQFAGVWMNSYVYIDTNKDKQFSFKDGQTDQTGTELYAYSFYSG NFSDDSQGVNSKGERLTGNDRNVLNPPAFNAPSEPGDYAIRLKVDWNSVDAGGQIGKDGT CYGDNGILANRGKIIDAILRVTDAAASIAGVEKSNNTPVEYYDLSGRRLKGEPTHGVFIR KGAKTVKVVK >gi|281305933|gb|ADEF01000015.1| GENE 126 152976 - 153173 98 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFAKKPFNIERNNYEKLGQGRPKLAYLQPPSYLVANTRKIQSSDYQRLSTLSCFTRPIIS MFQPA >gi|281305933|gb|ADEF01000015.1| GENE 127 153177 - 153302 90 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTITQQVQWSCPTILMFWECYLNELVKLRRKNTQIKAIKEK >gi|281305933|gb|ADEF01000015.1| GENE 128 153580 - 154782 1087 400 aa, chain - ## HITS:1 COG:fucP KEGG:ns NR:ns ## COG: fucP COG0738 # Protein_GI_number: 16130708 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Escherichia coli K12 # 10 394 21 431 438 198 32.0 2e-50 MKSNNPQLTNKRYLIPFVLITSLFFLWGFSRAILDVLNKHFQNTLDITITQSAWIQVTTY LGYFLMAIPAGLFINKFGYRRGVVFGLLLFGVGALLFIPSAEIGQFYAYLGALFVIGCGL VFLETAANPYVTELGPAQTATSRLNLSQSFNGLGSLFATLAVGQFLFNGTSTGGNVVIPY TILGILVLGIAVVFMRVDLPEIQHEVTAEDQALDNNYVKLCKHPLFVFGLLALLAYEVAE ISINSYFINFVTGQGWMSDNQASIVLTAALAFFMVGRFLGSWLMRHILPQKMLLYCAVGS VCSVALVLMDIGKVSMIALIANYLFEAIMFPTIFALSLSHLGNLTKSASSLLMMTPIGGC GFLLMGYLADTINMLVPFVVPLVGYAVVLLFATYVCKQKP >gi|281305933|gb|ADEF01000015.1| GENE 129 155148 - 157568 1926 806 aa, chain + ## HITS:1 COG:PA0781 KEGG:ns NR:ns ## COG: PA0781 COG1629 # Protein_GI_number: 15595978 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Pseudomonas aeruginosa # 132 801 24 684 687 100 21.0 1e-20 MSKKEQRTQKILSARDSLFKGCLLMLTMLFLSISATKAYNGTNVSTEKAEEGSVTLQVTD ALTGEPILGAVVKDSNGKTYVTNESGTCIMKLGNSDKKVKITVTFVGYKSYISYVSTQTR TLNIKLKEDAQLLSGVTVTSKKRHTDIMQQAKTLDQSILEKGGATSLAKMLESIPGVSSI SAGSTVAKPVIQGMHSSRILLMNNGVKLESQSWGNDHAPEIDYTGASMVEVVKGAECIRY GFGAMGGVVLLNDAPLPYGHNKPIVKGVTNIGYDTNARGISGSGSIEAGWKNFGLRLHGN YTRGGDYHTPEYIMNNTGYNNISMSAMGGFENKRITATVLTSLFYQRSGIYFGSQISDLA QLQERFRIGRPTESSLQPFSYEIGIPFQQSQHFTLKGEVKYRINPKQSLDLTLSFQENLR QEYENRMKKEWSVIPMQDLILKTFKGDLSYRASWKPYKMSTFAGVANTYQINYNFPGTKN PAFVPNFAALTMGGFLLQKATFFEKLQCELGLRYDFRVMSVSGYTTLNKYDYYDDFKVYS NFTSSFATHYQFNDNWDMRANIGWSWRPPDINELYAVGLQEGSYWVVGNRNLKSERGWKS ILGARYRNTWVSVEPSMFYQHINSYIYDHIGYGANRFHNSPSGKYAKFMYDQDDVRLYGG DIEATVNPVKGLSIVAKGEWIFARNITRDDWLPFMPSDKYGLSANYEHVFGAEKKIKASF SLSGNYVTKQERFDPNKDLVAVSPDPYFLLGTTADVAFKLPSNREIKVMLVGDNILNTLY KEYTDRFRYYAHERGMNYSLRTIIKF >gi|281305933|gb|ADEF01000015.1| GENE 130 157573 - 159078 1435 501 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880184|ref|ZP_06288904.1| ## NR: gi|282880184|ref|ZP_06288904.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 9 501 1 493 493 994 100.0 0 MKLQYKTIMRSTILAVGCCCMLAACSTNDVDDFLKTVVKAPPASIEYNGKGHSQIYAVSA VLRMGFKGGNIKVGNFGADNSIDNTYEQDSYSMISVNTDKPTNYPLMQQIEISKGDNGQM QITSQRDHFDVVASDDVYYGLELTYYGANHQQINGEFIQFYYKKNGDPDLDNSTLVQHQH FFTIGNEVLEHSYTIDGKTIAENSKQGFYPHTLDEKSTYYPELTFEMEGDKLKTCDITTT NALLAPESGNKSEIMPYDSTLIDKAINIFPTLKRDQATWTENGYKFFQTLTMPHAAELAN KLFTYQYRDTDPFEKQLGYEYQEGSGDGGVVDDGTNALRQRQGDFVELLHQCRRIGKGPN NLDRMGFKGVLQFSQANTEFAMQISLCNIVSQMDKSKNTIWPKYGNDNPDADSKTCSEIP TFGNGEGRGLYNFNEIKSEWSNHDIDIPLTFRVIADMKDGDEKFVEDFKKFYPHMDNNEI KNYFFNPQYLLSRNRKNIFVM >gi|281305933|gb|ADEF01000015.1| GENE 131 159245 - 160702 1031 485 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880185|ref|ZP_06288905.1| ## NR: gi|282880185|ref|ZP_06288905.1| hypothetical protein HMPREF9019_2013 [Prevotella timonensis CRIS 5C-B1] # 1 485 1 485 485 1008 100.0 0 MKKYSFCFVLILMLCTSCDDFIFGNMNINYNENPLEHKEVPHSGADAMVDSLKKKAPFGD AMSNPDQDGAFNNWARCLVMFKEGHSHGDEKFHGNYVYPAAPWRQEEFVIVENNSQKFPT VKVEWEKSIQTVFEKKLGKPTPQQPYIRLIGGDKNLWGICLYFLDKDGKLLNDEIYKHSD EYQIFFTISDVDDKGNPYKIEDCRGTWEVDKNGKDGKVDDHPVISPYFEGVDKDGSLGHD IFMRRQNATKNLFEYAYRDTWHQNAMADGMREFYNIRLLPPLDATDANSCVSYDKDCVGL KGHINFYYEANEPSSNFRPEIDGRYGSGEKKDTWPFMVKGFSGESVVYSRPSYILPYFYL SVRVMKCQKGKKAYIPKATIANKELDYAGYWDWMKSEKACAPFYNPFWQSKNTPLEVPEW KELIRFNIPIKVYCNRFDSDPTNVSPSEPYYFYLGREIGLTGKQAYEASQNVKTHGFGAF GNWFL >gi|281305933|gb|ADEF01000015.1| GENE 132 160760 - 162145 969 461 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880186|ref|ZP_06288906.1| ## NR: gi|282880186|ref|ZP_06288906.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 461 1 461 461 933 100.0 0 MKKINYTLILAFMALSSLFTACQRNGDMPDRTDANSTVDHLIFKEVFYIGYCTYRDLSSL GFKSQYERYEDANYLVIYNPTNQPISLANMALAYHVVDPSIQYSFQKDGNGDFTKRYYGI GGMSYFPNDPVTKKPHIIQPGDSVIVVKYACDHKKKFLAENETTEEQAKKDYCGWEALPD YSKLPKDKTFELCNQYKPKNGMYDPDDKFDNKDIPNMRDLVLWDGLPFKGPSQSMRMALV KLPDGDASKPHEKDKNGFYPDESPRSRNNWYRLYDLYGTEQDQINDETDPLKKRELEKNR KYPTAYYHMIYNTTGMAGVNAIELNYNWVVDFLTICPSTEKKMDLLTGPSSVTVYDATGH AVMEGTEEKKEKVWWYDRGTASVCKQIFGINDFSNPSFDPSQLQGALIRRSNGKGFVAEM SSALNYTKGVPSLCRRDNKGKPLDMTAYWKVNSINARTKKK >gi|281305933|gb|ADEF01000015.1| GENE 133 162205 - 163311 894 368 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880187|ref|ZP_06288907.1| ## NR: gi|282880187|ref|ZP_06288907.1| hypothetical protein HMPREF9019_2015 [Prevotella timonensis CRIS 5C-B1] # 1 368 1 368 368 728 100.0 0 MKKMMLCALATIALFANCTRDGQPEEKKNTAETESADLIIKDIYYAGDFVETPYGNKSEE TDDKFISVYNPTDHDISLENMALALCQYNAVDNVNFEKPNCDYRQKGFGVSNMIGFPKDK SGMPYIVKAGKTIVIAMRAINHAEGYKKYLTENGEDPTKYKGIEKLIDLSKADFEWGQNG NENVPHMTFLYCKENDKEQEKRMKEDKSKVGVWDEDDDEYVPFGFERNFTIALIRLAEPI EKIKENMNNAKVNEALLKEIEEPTAKYGRYVMWNESGHHSHSQILMFLPNQWVVDAVNVR FKGVTTEKSFPISGTLDKGWNGVYDKADDKLEVGAGKMLTRRFNGKRLSDTNNSSVDFEV KKVVVPTK >gi|281305933|gb|ADEF01000015.1| GENE 134 163404 - 164396 733 330 aa, chain + ## HITS:1 COG:MA4292 KEGG:ns NR:ns ## COG: MA4292 COG3291 # Protein_GI_number: 20093081 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 73 211 718 853 1995 90 37.0 4e-18 MRKIYMLTMSLFICMGALAGNNGSIGENLKWAFTDDGTLTISGTGEMEHADGNSGYAWGT DNHTLDRSLIKKVVVEVGVTTLGEYIFWDCQNLTEVSLPKSLTALKKECFKSCPKLKEIT LPDNITLIDESAFEECKALETVTFPKNLKEIKAKAFHTCNLKKVDLSQTQVETIGMGAFA HNAKCTEVYLPKTLTTFFGTDEGAFGDCSSLKKAVCLAVNPPQTLDGGEDWVYGGIKMDP VDYVNIFTGTDDDFVLEVPAGSEDKYRSANGWKNVASNITTGIRGVKAAQAKVGVYDITG KRYMNHADAQTVSTLQHGVYIINGKKVLVK >gi|281305933|gb|ADEF01000015.1| GENE 135 164594 - 166375 1669 593 aa, chain - ## HITS:1 COG:CAC3034 KEGG:ns NR:ns ## COG: CAC3034 COG0249 # Protein_GI_number: 15896285 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Clostridium acetobutylicum # 58 586 59 593 598 206 30.0 8e-53 MNNLKSYYLEKEQQLAAAIRQLKRKNKWFVAGEIFTFVVFLGFLVGYTIIDWGNVLLILS FVSLGVYALVRYYDVKNERTIHHQEALRKVYTQELQYLSGDFSCFDDGERYVDALHSFTF DLDVFGKDSLFQRINRTVTTGGSDWLAAQLSSVANRSARADAVDELASMEPWRAAFMALG ADGRIDSALIRQALQEIKSLQIPTFAAKRWTFVLAWLLIVGLFAAVVASVAGLVSAQLPL WWGILHFFGVFFVCSGACRVISKVVDKLHAQLQVYVQLIRQVGETTTFTTPQNAAIVNVL QGARQSFDQLNDILNGLDRRGNILGLFLMDALFLSDYFLVRRFLRWQRQYLGQVPVWIDA ISEIDGLVSMATFRYNEPQAGRAEVVESEEMVYEAVGLYHPFLGAKAVRNDFTLQHRHYY IITGANMAGKSTFLRALGINYILAMNGMPVFATSLRVSAYSLFSSMRTTDDLAHGISYFN AELLRLKQLLTACQHNSQTLIILDEILKGTNSADKLNGSRLFLQAVSALPVTGVIATHDL ELSKMEGERFHNYCFEIALGAKVSYSYKVTPGVAHNQNATFLLREILETIIDE >gi|281305933|gb|ADEF01000015.1| GENE 136 166535 - 166753 88 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVAIKTKQAILRTKTICFTAQNSLFSIPASCNQCTSKRAVHQPLKEYSMKVLSLYNHLLN LLTCFHHVNTSW >gi|281305933|gb|ADEF01000015.1| GENE 137 166691 - 168322 1561 543 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880190|ref|ZP_06288910.1| ## NR: gi|282880190|ref|ZP_06288910.1| hypothetical protein HMPREF9019_2018 [Prevotella timonensis CRIS 5C-B1] # 1 543 1 543 543 1019 100.0 0 MNTLIFKRMKKFLLMFVAVVASLTAQAQLSNTTATWSKSITPVTDATKLSGIHTVVAADG SVFVTGTYNQEVTFGTSSLDPDGLTPAYLAKYDANGNEKWAVGLVGNSLITDLATDADGN VYLLGTLAEDVTFESVDGNSQSVQGMKVDGALTPTRRAAFIAKYDKDGNLKVVHTIEATP DAELMASGIYSNTEVKVIPSQLAVVGSKVYLSCRYLGDVKFDNVSWKGCYTGFPGAFMQD NASFGLLTLDAADLKNATSVATIGAMEKQSETQSLVADFAFTVSGDCVYISAIGDGKLVL ETAKGEDKFEMKNDNGNLARAFILASIQGSQVVVKDYHTPTEATLAPNYSISGMKVSDGK LYMCGTVEGHNPLVATCPEVVGAAVFAAQLNVNDLSVNWCTTDSYDEGEVKTYTQQVSGM VENKGELLLATFVEQKSDRKVVNYLNYWFTADGKIKPAANDAVASMATNNNVVAVVTKAD KTTTVSMYPKKVVTGVQSIIANPSEPTYVYNLRGQYVGRTCQGLPAGVYMVKTGKQVQKV VVK >gi|281305933|gb|ADEF01000015.1| GENE 138 168347 - 169699 1200 450 aa, chain - ## HITS:1 COG:no KEGG:BF2139 NR:ns ## KEGG: BF2139 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 20 444 19 441 443 358 43.0 2e-97 MRKLHTFTLCLALLAVLTSCDNFLDIAPTGKVIAKTGEEYRQMLTYEYSTFPEDRGFVSL RSDELTMSPTATSPEDYSSYFDIWRWNDAAPSTSTAAPNWRRYWHVIYIANYIIENQGQI THASKKEIEQLVGECYMLRAYCHFLLANLFAQPYTKVNPETTRGVPLQLLADVKTIPHCS SLKAVYEQILKDIDEAAKHLNVEKWDEGQTYRFNVISAQALKARVCLYKGNWQGALKAAQ EVMAKHGELEDLNASGGVLPNHYMSVESIVALEQVMTNNYKQVGRPSESVIGIYKKGDQR KLRYMERKGSQTYLLLKGGSNEYRCSFRSAEAYLIAAEASTQMGQLSEARQYLSALMEKR YKPAVCTKYVDELNAMNQQQLLAEVYDERFRELAFEGFRWDDLRRTTQPMLTKTYKDETF QLKEHDARYTLRFPADAVAANPELEVWPVK >gi|281305933|gb|ADEF01000015.1| GENE 139 169712 - 172963 2843 1083 aa, chain - ## HITS:1 COG:no KEGG:BF2138 NR:ns ## KEGG: BF2138 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 1083 1 1101 1101 1178 54.0 0 MKKKTIYMLIALLACVLQVQAQERVITGVVLDGDLKDEPLIGATVGKGVGKVSTGTVTDY EGKFKLSVGKDTKALSVSYVGYTTQTISLKPGVNHYKILLMPDAHSINEVVVTGYQRIDR RKLTASVTTVDISDKAVGAVKNIDQALAGQIAGLSTVSSSGAPGAPVKIRIRGTASINGT QEPLWVLDGIPLEGTDIPSMEDLNDIDDMYQTSIAGINPSDIENITVLKDAAATAIYGAR AANGVIVITTKKGKEGRPVINFSAKYTYSPKLNIDRLNLLNADEKVDLELGLLASDYTYR EHKGEVANILKTLNETEAYKKGGWKALSASAQTQIDALRNIHTDWNDILFRHAMNQEYNA SIAGGSNRSGYYTSVGYYDEQGNVKGVDNKRFNMTLKADYRINKILKLGASVYANQRKQN SYLTDTNGFTNPVYYSRLANPYFLPFVEGKYHYDVNVQGKEDSSLDFNIFEERENTSHKR TDRSLMAIFDGELQFTPDLKLTSQFGLQYDNYSLEKYAGENSFAMRKEHFNATYAYKDGK RSYLPEGGMHKTTSYNSLQWTWKALLEYAHRFNKVHDVELLAGTEVRHINSSSVYSAAYG YDARTLTTHPVIFPNETTAESRPLHRENQAENAYVSWFATGSYTLFYRYTLGGSVRFDGS DVFGVAKKYRYLPLYSVSGLWRVHQERFAKKAKWLSNLSLRASYGIQGNIDKNTSPYLIG FYDKTSILPGKGEQMIKAETAPNPDLRWEKTKNVNFGVDLGLWNNAITLSADYYYRRSSD LIGMRMLPQETGFSATTINWASMENSGWEIALGSRNFYTKNFKWTTNLNLGFNTNKILNE SVAENSTYPSREGYPVGALFAYKTAGLDKDGYPLFVNKEGKKVTAAELLKLNNAGASTLS ASEQRALYTYMGTTDPKVSGGFINHFEYKDWQLGINFIFNLGMKVRVQPSYNPTTYDRGL NVNRDILQRWTPNNNQTAFPKLMTKDVRVPEHIQYSEYNTYSMLDTWVKDRSYMRLQSLR LGYKLPSKWLNKVGVTNASLSLEGRNLFVVATDYTNYLDPETMGNPFAQPMAKSVIFGLN MNF >gi|281305933|gb|ADEF01000015.1| GENE 140 172975 - 175509 2232 844 aa, chain - ## HITS:1 COG:no KEGG:BF2194 NR:ns ## KEGG: BF2194 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 3 844 12 869 869 1012 59.0 0 MFSATSMEMRAACQIWPFSKKKKKTEKPISAYKRLTGRDSVEMHGVFNVIKKGDTIYYEI PTRLMGREFLVVNRLQRVPSELNESGVNKGINYENQTVRFEWDKRQKRLIVRQQRITPEV PASAAMAGSVKDNYIDPILANLKIEGMANDSSTVIVKVNDLYNGKENFLNDVFNNINLGT SPIANLSRIIDIKAFKNNVTATSELTTTVHEGNSKVNVTVVVSSSLSLLPKYPMQGREED ARVGYFTTSNIQYNDYQNKVEPKNYITRWRLVPSDTAAYLRGELVEPVQPIVFYIDQAVP KHLRPYIKKGMTDWNKAFERAGFKNAIQVFDYTDSLAQVGDDMGYSVLTYAASTKANAMG PSVIDPRTGEILEADIVWWHNVQSLISEWIKVQTGAQNPQARRMQLPEELIGDAVRFVAC HEVGHSLGLRHNMIASNAYPTDSLRSVSFTQRMGGTSSSIMDYARFNYVAQPGDGVKVMS PHIGPYDLMAIEWGYRWYPQGTDEQQKLNDFLEKHRGRLYKFSEAQPQRTAIDPRALSED LGDDAVKSARYGIANLKRIVPNIVKWTTTGEPGQDYDEASNLYSAVIYQWSLYLYHVMAN VGGMYLENLTVGDGQTSFHFVEKNKQRQALQFLLDQVLSEPKWLFNTPLSKLTYLQRKTP LGVEEQQPFYMLKNQQNYILWDLLNNDRLMRMYENEYENGKKAFTPVEFMDMLHRHIFKT TLAAKSPNLLERNLQKSFIDALITAAAEGEGVKINKKLYENSFLDQPDKRLGCQEETYLS SKSRNIQMTNTQVTRNSDALSLKRGEMIRVMKLLKSRLHRSDTTTRLHYEDVILRIQTAL GLTK >gi|281305933|gb|ADEF01000015.1| GENE 141 175757 - 176854 857 365 aa, chain - ## HITS:1 COG:no KEGG:Coch_1607 NR:ns ## KEGG: Coch_1607 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 40 361 71 397 400 70 23.0 7e-11 MKLKIYLLLLTFYGMALYAQESQHVNLSVEARADYQRESIDGVKVNDKTGFKGNIFNLII NGNLSPKFSFKYRQRLNGINKDYTFFDATDWLFLTYHANQNWTLSGGKWAVLCGPWEFDP APIDCFQLFEFCYNFPCYEWGLWLGYQTTNKKDQFFLQMVESPFRKVYKRNSGISSEMYA YNLIWYGSHGILHTDWSVNLMEYAPGKLINYLSFGNRFDVADNLQIGVDYMNRATKGQTF LFKDCSMTARVDYQPTPQVNLWAKASYDVNHAGVDTNPETATPLTAPNQKTAEQSKPRAD LVLYEGTEITRVGAGLEYYPLKNKNVRLHANYSYCFGKNTNPTGYLQDKHSILDLGVTWR VNVIK >gi|281305933|gb|ADEF01000015.1| GENE 142 176926 - 177900 790 324 aa, chain - ## HITS:1 COG:TM0177 KEGG:ns NR:ns ## COG: TM0177 COG1284 # Protein_GI_number: 15642951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 34 311 7 274 283 144 32.0 2e-34 MNNKQESEMTFVEKLQNAPNRIKQIVCTRKFWVELVVMTVGMFVAAMGVYFFLIPSKLII GSITGLSLVLAKLLPFVSVGTMIFVINAILLVLSFLLIGNEFGAKTVYTALILGPMIDFI GSIVPIHESLFTTYVAGQAIANPWFDLLCFVLILSASQSILFSINASTGGLDILAKIFNK YLHVKLGTAVMLAGGAICCTAFAINPVSLVIIGLIGTWLNGLILNHFMSDINSKTRVYII SKDYQKILDFVLHTIRRGVTMHEVIGGYSNEKQIQLEIVLTKEEFSTLIDFMSKERLKTF ITSDTVSEVYGLWNKKGLLRTGNY Prediction of potential genes in microbial genomes Time: Sat May 28 06:40:16 2011 Seq name: gi|281305916|gb|ADEF01000016.1| Prevotella timonensis CRIS 5C-B1 contig00021, whole genome shotgun sequence Length of sequence - 19287 bp Number of predicted genes - 17, with homology - 14 Number of transcription units - 9, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 250 - 546 129 ## + Term 676 - 715 -0.9 - Term 767 - 805 5.3 2 2 Tu 1 . - CDS 827 - 2602 2470 ## PROTEIN SUPPORTED gi|237711154|ref|ZP_04541635.1| 30S ribosomal protein S1 - Prom 2625 - 2684 3.8 - Term 2696 - 2756 4.5 3 3 Op 1 3/0.000 - CDS 2795 - 3301 573 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 4 3 Op 2 . - CDS 3271 - 3927 559 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 5 4 Tu 1 . - CDS 4070 - 4735 594 ## Cpar_0456 hypothetical protein 6 5 Tu 1 . - CDS 4946 - 5149 228 ## COG0286 Type I restriction-modification system methyltransferase subunit - Prom 5342 - 5401 7.2 + Prom 5539 - 5598 10.4 7 6 Tu 1 . + CDS 5822 - 6007 90 ## + Term 6055 - 6110 1.3 - Term 6048 - 6091 7.8 8 7 Op 1 . - CDS 6117 - 8177 1479 ## gi|282880203|ref|ZP_06288922.1| hypothetical protein HMPREF9019_0669 9 7 Op 2 . - CDS 8277 - 8477 281 ## - Prom 8497 - 8556 7.8 + Prom 8887 - 8946 6.2 10 8 Op 1 . + CDS 8972 - 10411 1140 ## BF2161 hypothetical protein 11 8 Op 2 . + CDS 10463 - 10951 500 ## gi|282880206|ref|ZP_06288925.1| hypothetical protein HMPREF9019_0672 12 8 Op 3 . + CDS 10960 - 11616 435 ## BF2163 putative lipoprotein + Term 11702 - 11741 7.0 + Prom 11719 - 11778 2.8 13 9 Op 1 . + CDS 11807 - 13918 1592 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins 14 9 Op 2 . + CDS 13923 - 14627 687 ## BF2165 lipoprotein 15 9 Op 3 . + CDS 14674 - 16227 1695 ## COG2461 Uncharacterized conserved protein 16 9 Op 4 . + CDS 16242 - 17120 879 ## BF2104 hypothetical protein 17 9 Op 5 . + CDS 17136 - 18581 506 ## BF1115 hypothetical protein Predicted protein(s) >gi|281305916|gb|ADEF01000016.1| GENE 1 250 - 546 129 98 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MARCKRNRNQRNARSFLPFALSERKFVGISLPRALPWAVFLLGFQPVFALSINFCAVSWL YALLGFQPVFALSINCCTVSWLYALLGFQPVFARNINW >gi|281305916|gb|ADEF01000016.1| GENE 2 827 - 2602 2470 591 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|237711154|ref|ZP_04541635.1| 30S ribosomal protein S1 [Bacteroides sp. 9_1_42FAA] # 1 591 1 598 598 956 79 0.0 MSNLKNVQPLEDFNWDEFENGTNVSANCDDLAKMYDETLNKVSEHQVTEGTVISIDKKEV IVNIGYKSDGIIPASEFRYNPDLKIGDKVEVYVENQEDRKGQLVLSHKKARLTQSWDRVN EALDNDEVIQGYIKSRTKGGMIVDVFGIEAFLPGSQIDVHPIRDYDIFVGKTMEFKVVKI NQEFRNVVVSHKALIEAELEAQKKEIISKLEKGQILEGTVKNITSYGVFVDLGGVDGLVH ITDLSWGRVSDPHEVVSLDEKIHVVILDFDDEKKRIALGLKQLTPHPWDALDPNLKVGDK VKGKVVVMADYGAFVEIAPGVEGLIHVSEMSWSQHLRSAQDFMHVGDEVEAVILTLDRED RKMSLGIKQLKADPWEDIETKYPVGSKHTAKVRNFTNFGIFVELEEGVDGLIHISDLSWT KKVKHPSEFTTVGSDIEVVVLEIDKENRRLSLGHKQLEENPWDTYETLYTPGSIHKGKIT EMMDKGAVITLNEGGEGFATPKHLVKEDGSQAKQGEELDFKVIEFVKDTKRIILSHSRTF EDEKEEVKAAPKHTSKKQNDAAAINNVAAGTSLGDLDVLAKLKADMESSDK >gi|281305916|gb|ADEF01000016.1| GENE 3 2795 - 3301 573 168 aa, chain - ## HITS:1 COG:HI0218 KEGG:ns NR:ns ## COG: HI0218 COG0610 # Protein_GI_number: 16273673 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Haemophilus influenzae # 1 168 859 1026 1026 232 70.0 2e-61 MDWDDVVFEIDLLKSQEIDLDYILELVFEHNKKTKDKDALIDEVRRIIRSSIGNRAKEGL VVDFIHDTDLESIQDKAGIISAFFDYAQQRQKEEAANLIAEEKLNVDAAKRYIQTSLKRE FASENGTDLNAILPKMSPLNPQYLTKKQSVFQKIAAFIEKFKGIGGII >gi|281305916|gb|ADEF01000016.1| GENE 4 3271 - 3927 559 218 aa, chain - ## HITS:1 COG:HI0218 KEGG:ns NR:ns ## COG: HI0218 COG0610 # Protein_GI_number: 16273673 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Haemophilus influenzae # 30 191 224 383 1026 271 84.0 7e-73 MTTYNTIAELQNFIVLDSYTKLSQVGEQLDFTMNWAKADNMLIKDLKDFTATFFQKNTLL QVLLSYAVFDTSDTLLIMRPYQIAATERLIWKIKSSYQAKVWSTPEAGGYIWHTTGSGKT LTSFKAARLATQLDFIDKVFFVVDRKDLDFQTMKEYQRFSPDSVNGSESTAGLKRNIEKD DSKIIAPPTTIFVTGSDGSERGKPLRNLRWTGTMWCSR >gi|281305916|gb|ADEF01000016.1| GENE 5 4070 - 4735 594 221 aa, chain - ## HITS:1 COG:no KEGG:Cpar_0456 NR:ns ## KEGG: Cpar_0456 # Name: not_defined # Def: hypothetical protein # Organism: C.parvum_NCIB8327 # Pathway: not_defined # 1 186 1 186 186 138 45.0 1e-31 MANETTVIRKYKDYKELFFYQKTDTIYQLTYIFCTRFLPKYGDRTVDQMVQAARSGKQNI VEGIEDGNTSSEMELKLLNVARASLQELREDYADYLHTRHLALWNEKHNRYNAMLAFCKT HNQPKDYLPYAQRWTAEEFCNALLTLCHITDKLMCSFLKSLEKQFVEQGGIKERMYAART GYRKQQDEERRLLLRENEQLKAELKALKERLKRLEGENRDD >gi|281305916|gb|ADEF01000016.1| GENE 6 4946 - 5149 228 67 aa, chain - ## HITS:1 COG:NMB0829 KEGG:ns NR:ns ## COG: NMB0829 COG0286 # Protein_GI_number: 15676726 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Neisseria meningitidis MC58 # 3 67 450 514 514 71 50.0 5e-13 MEHVSTSVDNNTIAENDYNLSVGTYVEAEDTREVIDIVKLNEEVAQTVQRIDALRADINK IIKEIEA >gi|281305916|gb|ADEF01000016.1| GENE 7 5822 - 6007 90 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQTAGLESCFSGQKSGKMGRKRRAITVTHFMTTHYEHRSYLAYLLPIVPLVVYTQVLRGT L >gi|281305916|gb|ADEF01000016.1| GENE 8 6117 - 8177 1479 686 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880203|ref|ZP_06288922.1| ## NR: gi|282880203|ref|ZP_06288922.1| hypothetical protein HMPREF9019_0669 [Prevotella timonensis CRIS 5C-B1] # 1 686 33 718 718 1368 100.0 0 MTSKIFSIAIIFVSLLCFSCSETDMDNELNPSTPPSTHASTTYDVDIEAQTNAPERQHAS AKPFDMSFKVSEENIGGKTVLYPKLNITKEVIPSLVVLYDKRNNRKEIVEANWKVVKKGT DVRLILEKLSLQSNIADGEWYLMSMIGGGERKDDNLEVNTETAINVVEKNQEFTTSCPFA TTWRRIVKNSNQIKLENKNKKMVFKPQGVFLMVWVENRTTLDTRLRREITMESNAFCASG AYKFNINKDQIKQIKEDADLAASYWEPNSANIIQGLSPVYEKYNAKQYATTIKLNYQDGK DDGTLRQGKGDLNNYIYFNSYKKPATGVTAAKNTKTTRGFLVCLMPVNYKKTSNYGSIVG ETLFYGKVDVTTPNRKNFTYDTKIYGDKDKSDPNTWCPYMGNRYLLGSFSNKLEKGTYKE LEKGTCYKMMLRIVRPMLPIERLWAHWQGSKMGRRNYNDAEGIAEGTKKEKSYPTLDSKL YRLPKYSEFVPIFNNPKQQLDNGKGLGGVPPFDAGEGYGNSIVMGSHLNFVDINGKQNKL DNWFCSVKGSNVLYGIMYMKPVDHRDKFATNNYKVAVRMTFPKAKAGTATVDVYYLGPNY NISRENAGYYFAHEDFWKRLDAKDFIQRKFQLGNYWISDKNITHKYEPKYLNVDFTLDGI SQKDDKKNRVKTGKSYFLPWLKNPAW >gi|281305916|gb|ADEF01000016.1| GENE 9 8277 - 8477 281 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTMCYDDENKLERCLFMASKKKEYVAPHTHAIFIEAVNLLAASGPEASVDDIKYGGDIND EDIDDQ >gi|281305916|gb|ADEF01000016.1| GENE 10 8972 - 10411 1140 479 aa, chain + ## HITS:1 COG:no KEGG:BF2161 NR:ns ## KEGG: BF2161 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 12 439 10 435 472 248 38.0 3e-64 MKIVRNLALPVLAFLVMGLASCSSDDDVVKYSTNALKNTELMNILKQKGYQFDKDGKLEL NDLANNTTSLDLSGTKLKDLSGLDILPNLKEVKLSNNGYGPVFDFAKLPAQITGVDLTGN DIYEFKGLANTDNVEATGYEATDIKRHFEKLYLPEGAKYDQDQIVAFYKKSEMDKKAVDM KMADANGKLNTYNTLRNVPDAIVRKQLYESFSQLFVITENKDTLIDVSRRMTSPEQSNNP IVIFEGKNADGFQYVLHNKSFKGTTLGVTSEEYTKVPYLKMPKQISFFQLEHLDLLNGID MSANTDLFHGHMYTCRSIKKMDMSHSTKLGQRSIPLEMTDMDVSWVEIKDCPDLEEIMFP KKAYIMNNMTFCYLPKLKKLDLSQFESFYRCDLYELKNAQIIYPTMKYSVYMGKKTQERH SGLGIDQDIFDRQETKDFIKNNIKYIDNNSFAVEGQYMPHPWGRHEDVRWMDIWKKKPW >gi|281305916|gb|ADEF01000016.1| GENE 11 10463 - 10951 500 162 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880206|ref|ZP_06288925.1| ## NR: gi|282880206|ref|ZP_06288925.1| hypothetical protein HMPREF9019_0672 [Prevotella timonensis CRIS 5C-B1] # 39 162 1 124 124 244 100.0 1e-63 MKRLIFSLLVLLMASFVSVNAQVINNEVQFKGSATNVYMGGKHVRDMNDLTFTVAPTEAG RCCLSGHAAFLAAGITYHDMDFTLKKVVFDVLQPNGAISNASGYAHIYIQLFKKITVLSK DFNVTSLTGNVTDNNLTFHIEAIIPDYKGGYVISFDFTGNKI >gi|281305916|gb|ADEF01000016.1| GENE 12 10960 - 11616 435 218 aa, chain + ## HITS:1 COG:no KEGG:BF2163 NR:ns ## KEGG: BF2163 # Name: not_defined # Def: putative lipoprotein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 21 217 24 213 215 174 45.0 2e-42 MAASKKYLFLYLALMVCSICASCSGDERIEQSSVDAEYAAKVKEILKDSIVLRSKAMMAT VDKTLLPEGCPLKYYFHWNEGSDKPLNIQLKNFSVGKMPVQIWFNIDCKLTRLNSWERDE YKGNGWVKFIGEYGATTYMPNKNDTQHEYENGDGGSGYVQGYLNVNTKQIEFSTNFNVML MQSYVYLQTIDYSKMDTFKEDFAKFEEDLEKYKQAHGL >gi|281305916|gb|ADEF01000016.1| GENE 13 11807 - 13918 1592 703 aa, chain + ## HITS:1 COG:AGl1858 KEGG:ns NR:ns ## COG: AGl1858 COG4771 # Protein_GI_number: 15891046 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 580 19 589 707 112 23.0 3e-24 MKIAIAYISSVLLLSCLGTMPVLAQEKPTEKADTTKTRNLEGVVVMGSRTARPVKLSPIT TRVLSGKGLVESGYSDFQQALQHETPGLSIQKVTFGSEINLDGLDARHVLFLTDGERMTG DMAGNLDYERFNLHAIDRVEIVKGASSTLYGSRASGAVINIITKKTNEPFAFDAGVRWGQ MNERNFKHPKKKDFIYMFEKNADRPNVQGWLSAGFKKGAFTSQTDAWYSESDAFYLYQDK NDRKVYTKEANPFLEKDIVLESSFPRPPMGIEGREHLIASQKLYFEPSKNFKAQVYGSMF FINQYDLVQDLVLTQGRDYTWGMKMSYSLKNWLTLTASLHNDYYDRFKRHERRDERKPVY HSRIFQPRLTLTSNYFQGHAIVMGLEYCGDQLTSDRFVNHKMTSRTLNETEFYVQDDWTA SDHWMFSSGVRTNFSRAFGFMYMPKIAAKYSPDEHWAVRANYSMGYRSPSIKELFFNWDH LGMFMIKGNEFLKPEKNNYVSTGVEYSDQRFFFNGTLYGNFFRDKIEGVWRIYDMQYNFE YVNLSNQTIAGIDLLGRWTPKKWFTLNASYSYVYVSKEKGLRINTTSPHAATAGIKYSYN KKNYRLDAYVNAQIMDEKQYDVQDRVYVEKDARSYDAYFRCTLPSYMLCNLNVAQTYKER FRLSLGVDNIFNYKPKTLGSGLTAFSVPATAGARVYVQFEYKI >gi|281305916|gb|ADEF01000016.1| GENE 14 13923 - 14627 687 234 aa, chain + ## HITS:1 COG:no KEGG:BF2165 NR:ns ## KEGG: BF2165 # Name: not_defined # Def: lipoprotein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 11 234 16 237 238 295 62.0 1e-78 MKTKSLPLLLCLFLSISSCISYDAEEFTGKVMPRVASYTTGVTNDWIYFNLRTGEIFNRT APNRDIREGQQQSRLDWDIAFCGYHVRTNSGTSGKGKGGVIDLGFGDYDHWQRVEQLPKT EKWIVDNDTTVMITYSQNDWFRYVNTHKLDPKENPWFDPNNGPQRTLTSANPLLERNMFL SGPPMTYTPSYHVYVVRTADGKRYFKLQIVSWYNQHTEIDDTGGQISYYCDELK >gi|281305916|gb|ADEF01000016.1| GENE 15 14674 - 16227 1695 517 aa, chain + ## HITS:1 COG:FN1655 KEGG:ns NR:ns ## COG: FN1655 COG2461 # Protein_GI_number: 19704976 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 8 513 1 511 512 474 50.0 1e-133 MNKNICEMQRHLPKIEIERLQRLADIKQQYALGAISLEEAKRQLKEKVGKLRPYHYALME QTMTEENPEECFKENLSELNKLLEEMMDYSIPTLPDDHPIRHYYRENEEMRSILNAAEDL VQYPVIKNQWLELLDKASAYLIHYTRKQNQLYPILEKKGFDRPTVTMWTFDDMISNSVKK LRPLLEANDEEAFIAQVKELIPYLRDLMDKEEAILYPTSLALINEEEFEEMKSGDQEIGF AFIDVAKTEKKDNIRPADGFAQELQSLLAKYGYGIGHNQPLDVTTGMLTLEQINLIYQHL PFDISFVNEDELVQFYSDTDHRIFPRSKNVIGRKVENCHPRKSVHIVREIVEKMRSGEQS KAEFWINKPNLFIYITYYAVRDKQGTFRGILEVMQDCTRIRSLTGSQTLLTWADEEKKSA TPPPTATMTDSVEAGKDNNQQVPEITEDTMLKDLFSQYPGLKEALAQQYAPFKMLQTALG KLILKKATIKMAGERSGLGTQKLITMIRQTIRSINQS >gi|281305916|gb|ADEF01000016.1| GENE 16 16242 - 17120 879 292 aa, chain + ## HITS:1 COG:no KEGG:BF2104 NR:ns ## KEGG: BF2104 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 9 289 23 305 306 362 65.0 1e-98 MDKKVREYYWWRTIASFLLVLFAMPLGHALMILMEKFMSEGAMHVAGFMMGLAGLIMVIV GVFVKGDTRQTLWGLFGGLLFWTGWVEFLFLYYARRYGVQPEIENGVVVTKPEYLIMPAS FGLWMMVMTMYVFSTKNGCDLITWIQKVCFRSKRKVVVVQPMTRHTSIVTFMELNMILWA MYLLLMFCYDKTFLGDHHPVTFLVGVGCLVGSIFMFRHQLHIAAWGANIRMAIATVIIFW TPVEILGRMNFFQEFWVEPEKHAWQMLVILMVFILLGVYLWLKGKQRKRVVQ >gi|281305916|gb|ADEF01000016.1| GENE 17 17136 - 18581 506 481 aa, chain + ## HITS:1 COG:no KEGG:BF1115 NR:ns ## KEGG: BF1115 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 3 478 2 493 504 382 40.0 1e-104 MKKSTWRRQHQWLGIILAPFVILFCLSGIVLNHAKLFQGIDISRTLLPSEYRYSQWNQGL LRGTQKWRTKVLIYGNAGIWAKEKDADTITDFNRGLPKCADLRNIRGMAVMPNGSLYAMS QRHLYRLNPHGVWEQVDILQGKHEKLSDITQKGDSLIITGRSYVYLSRYPYHDFQKITLT KTDNDKGKVSLFRTIWLLHGGGLFGMAGKLFVDAVGLILLFLSISGVYYSFAPRSRSLLG TRTKRRLITWHDKLGRGAMAFLLLLTITGWMLRPPALIAIASGKIPPIPFSSMDSDNPWN GCLRSLRYDENKADWLLCTSDGFYSLRHLGDTPQREKVQPPVSVMGINVEQHTHRNTWLI GSFSGMYVWNRTQQSVTDYFTHQKVESVSGSPFGSHAIAGFSSDLGDADMVVDFKKGNSL LRMPDSMTTLPMSLRNVCIEVHTGRIFTFLGMASLFYIFLMGVACVWCLWSGWKIWQRKP H Prediction of potential genes in microbial genomes Time: Sat May 28 06:41:24 2011 Seq name: gi|281305914|gb|ADEF01000017.1| Prevotella timonensis CRIS 5C-B1 contig00011, whole genome shotgun sequence Length of sequence - 1609 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 102 - 162 95.0 # CR626927 [R:3201914..3202064] # # Bacteroides fragilis NCTC 9343 # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides. + Prom 232 - 291 5.1 1 1 Tu 1 . + CDS 362 - 1543 1016 ## COG0642 Signal transduction histidine kinase Predicted protein(s) >gi|281305914|gb|ADEF01000017.1| GENE 1 362 - 1543 1016 393 aa, chain + ## HITS:1 COG:BH1802 KEGG:ns NR:ns ## COG: BH1802 COG0642 # Protein_GI_number: 15614365 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus halodurans # 153 388 356 594 600 84 26.0 5e-16 MQWTDRVRHVKVILVIVAVLIAVISLIVSHRLIRDLEKEEQNKMEIWAEAMRTLNEADEN TDLNLVLKVINENHTIPVIVMDSQGTIQSNRNIKLSNKSKVDSVAYVQQLGRKLKTSGKY IRIFFNEPEEKEYIDVCYDDSFMLKRLSTYPYIQLGVVLIFVIVALFALLSSKKAEQNKV WVGLSKETAHQLGTPISSLMAWLAILKETYPDDTLIPEIDQDVKRLQLIADRFSKIGSAP ELELYSLSKVLQNVVAYMNRRTSKKIAIESQFAFEGNDQLVLMSPSLFEWVIENLCKNAV DAMGGVVGKIKISAFRESKKIVIEVSDTGKGIKKKDIKNVFRPGFTTKRRGWGLGLSLAK RIIEEYHSGKIFVKDSEKDKGTTFRIELKASIH Prediction of potential genes in microbial genomes Time: Sat May 28 06:41:35 2011 Seq name: gi|281305875|gb|ADEF01000018.1| Prevotella timonensis CRIS 5C-B1 contig00032, whole genome shotgun sequence Length of sequence - 40553 bp Number of predicted genes - 44, with homology - 40 Number of transcription units - 28, operones - 11 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 458 255 ## PRU_0240 LysE family translocator protein - Prom 685 - 744 10.4 + Prom 479 - 538 6.0 2 2 Tu 1 . + CDS 711 - 1688 494 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase + Term 1825 - 1861 2.5 3 3 Op 1 . - CDS 1903 - 2076 59 ## gi|282880218|ref|ZP_06288935.1| hypothetical protein HMPREF9019_1056 4 3 Op 2 . - CDS 2076 - 2702 208 ## gi|282880219|ref|ZP_06288936.1| hypothetical protein HMPREF9019_1057 5 3 Op 3 5/0.000 - CDS 2714 - 3601 1172 ## COG0388 Predicted amidohydrolase - Prom 3643 - 3702 2.0 6 3 Op 4 . - CDS 3704 - 4747 718 ## COG2957 Peptidylarginine deiminase and related enzymes - Prom 4775 - 4834 9.6 + Prom 5348 - 5407 7.3 7 4 Op 1 . + CDS 5434 - 6057 469 ## PRU_1419 ABC transporter ATP-binding protein 8 4 Op 2 . + CDS 6063 - 6848 577 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 6865 - 6892 -0.8 9 5 Op 1 . + CDS 7471 - 7692 265 ## gi|282880224|ref|ZP_06288941.1| conserved domain protein 10 5 Op 2 . + CDS 7749 - 9359 999 ## gi|282880225|ref|ZP_06288942.1| hypothetical protein HMPREF9019_1063 + Prom 9374 - 9433 1.8 11 6 Tu 1 . + CDS 9463 - 10764 734 ## BVU_1598 transposase + Term 10791 - 10827 1.1 + Prom 10827 - 10886 6.2 12 7 Tu 1 . + CDS 10939 - 12177 705 ## COG5433 Transposase + Term 12229 - 12275 2.3 - Term 12218 - 12258 -0.6 13 8 Op 1 . - CDS 12324 - 13274 514 ## PRU_1447 endonuclease/exonuclease/phosphatase family protein 14 8 Op 2 . - CDS 13285 - 14175 732 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 15 8 Op 3 . - CDS 14220 - 15002 789 ## PRU_1171 prephenate dehydrogenase (EC:1.3.1.12) - Prom 15048 - 15107 4.7 16 9 Tu 1 . - CDS 15157 - 16221 950 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 16263 - 16322 1.5 17 10 Tu 1 . - CDS 16354 - 17523 1016 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 17715 - 17774 3.7 18 11 Tu 1 . - CDS 18027 - 18617 443 ## gi|282880233|ref|ZP_06288950.1| hypothetical protein HMPREF9019_1071 - Prom 18642 - 18701 10.6 + Prom 18642 - 18701 7.6 19 12 Tu 1 . + CDS 18792 - 19481 601 ## PRU_1254 hypothetical protein 20 13 Op 1 . - CDS 19505 - 21430 1321 ## COG2217 Cation transport ATPase 21 13 Op 2 . - CDS 21504 - 21713 232 ## BL01899 Cu2+-exporting ATPase - Prom 21788 - 21847 3.7 22 14 Tu 1 . - CDS 21900 - 23270 1157 ## COG0534 Na+-driven multidrug efflux pump - Term 23356 - 23389 0.1 23 15 Op 1 . - CDS 23400 - 24173 681 ## COG4221 Short-chain alcohol dehydrogenase of unknown specificity 24 15 Op 2 . - CDS 24251 - 25342 909 ## COG0381 UDP-N-acetylglucosamine 2-epimerase - Prom 25406 - 25465 5.8 + Prom 25438 - 25497 5.5 25 16 Tu 1 . + CDS 25520 - 25765 108 ## - Term 25850 - 25908 5.3 26 17 Op 1 26/0.000 - CDS 26024 - 26974 1202 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs 27 17 Op 2 . - CDS 27007 - 27459 338 ## COG1585 Membrane protein implicated in regulation of membrane protease activity - Prom 27566 - 27625 5.4 - Term 27766 - 27807 4.0 28 18 Tu 1 . - CDS 27883 - 28803 683 ## COG0501 Zn-dependent protease with chaperone function - Prom 28841 - 28900 8.5 29 19 Tu 1 . - CDS 28929 - 29144 169 ## gi|302482872|gb|EFL45889.1| hypothetical protein HMPREF9296_1373 + Prom 29126 - 29185 4.6 30 20 Tu 1 . + CDS 29273 - 29422 128 ## + Term 29523 - 29558 1.3 + Prom 29425 - 29484 5.2 31 21 Op 1 . + CDS 29647 - 30273 453 ## BDI_1981 hypothetical protein 32 21 Op 2 . + CDS 30273 - 30557 295 ## COG1846 Transcriptional regulators - Term 30433 - 30484 7.0 33 22 Op 1 . - CDS 30700 - 31026 161 ## gi|261878817|ref|ZP_06005244.1| conserved hypothetical protein 34 22 Op 2 13/0.000 - CDS 31092 - 32003 894 ## COG0167 Dihydroorotate dehydrogenase 35 22 Op 3 . - CDS 31991 - 32767 582 ## COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases - Prom 32791 - 32850 6.0 36 23 Tu 1 . - CDS 33029 - 33574 353 ## PRU_0541 DNA-binding protein - Prom 33596 - 33655 3.6 37 24 Tu 1 . - CDS 34064 - 34165 74 ## - Prom 34202 - 34261 3.2 38 25 Tu 1 . - CDS 34268 - 35209 978 ## COG1466 DNA polymerase III, delta subunit - Prom 35293 - 35352 3.6 + Prom 35163 - 35222 5.8 39 26 Tu 1 . + CDS 35446 - 35895 261 ## PRU_0539 hypothetical protein + Prom 35899 - 35958 2.9 40 27 Op 1 . + CDS 36007 - 37245 620 ## TDE0471 BNR domain-containing protein 41 27 Op 2 . + CDS 37312 - 38127 714 ## COG1076 DnaJ-domain-containing proteins 1 42 28 Op 1 . - CDS 38404 - 39234 1040 ## BT_0883 hypothetical protein 43 28 Op 2 . - CDS 39319 - 40107 609 ## COG0327 Uncharacterized conserved protein 44 28 Op 3 . - CDS 40118 - 40354 162 ## - Prom 40376 - 40435 5.1 Predicted protein(s) >gi|281305875|gb|ADEF01000018.1| GENE 1 2 - 458 255 152 aa, chain - ## HITS:1 COG:no KEGG:PRU_0240 NR:ns ## KEGG: PRU_0240 # Name: not_defined # Def: LysE family translocator protein # Organism: P.ruminicola # Pathway: not_defined # 1 152 1 152 221 182 63.0 3e-45 MPFEFHIDIIDQIWKGVIIGVIASGLMGPVGVLCIQRTLNKGRWYGFVTGVGAACSDIIY ALLTGLGMSFVLDLITNPKNMFILQISGSLLLLLFGIYSFRNNPTNHMHVSGTKKGTYTY NGITAFWLTFLNPLIILLLIAMFAQFNFVVPN >gi|281305875|gb|ADEF01000018.1| GENE 2 711 - 1688 494 325 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 11 321 5 316 319 194 35 6e-49 MKSLSKLKPYVIGLDLGGTNSVFGIVDSRGDIKATTSIKTQGYDDVNDYVAASVEALQLI IDQVGGIDTIKAMGIGAPNGNYYNGTIEFAPNLSWGHNGVVPLAKMFSEKLGIPVALTND ANAAAIGEMTYGVARGMKNFIVITLGTGVGSGIVVNGQLVYGSDGFAGELGHVVVRREDG RSCGCGRNGCLEAYCSATGVARTARELLETTEEPSLLREMILEDITSLDVSIAAEKGDKL AQHVYQTTGEMLGEACANFAAFSSPEAFIFFGGLTKAGDLLMKPLKASYDKNVLKIYKDK AKFLISGLDGSSAAVLGASAIGWEI >gi|281305875|gb|ADEF01000018.1| GENE 3 1903 - 2076 59 57 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880218|ref|ZP_06288935.1| ## NR: gi|282880218|ref|ZP_06288935.1| hypothetical protein HMPREF9019_1056 [Prevotella timonensis CRIS 5C-B1] # 1 57 1 57 57 89 100.0 6e-17 MANFKYATDNRFILNIDENLLYDKKDSLTSNKVIQFQNNAKRVLGIKLGIRKRITSL >gi|281305875|gb|ADEF01000018.1| GENE 4 2076 - 2702 208 208 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880219|ref|ZP_06288936.1| ## NR: gi|282880219|ref|ZP_06288936.1| hypothetical protein HMPREF9019_1057 [Prevotella timonensis CRIS 5C-B1] # 1 208 1 208 208 386 100.0 1e-106 MATTSINRSNRQLCKTRTVIIALLLTLSTTHIHAQSSFDEREGCLNVVNTNVTKGTGEYG DDTFSMNYQHERFITEQWSIGAGIGYNYHSQYRLAIVPVFASSTFFFTNTQWAPFVNVQL GSFGIIRKGNIDTNTKYSTTRKNTDFNLLMSPSIGIKLHLSSHIGLMTSITNENILLKVY NDKQNAYTNKVISSLGINIGLFFQIKGW >gi|281305875|gb|ADEF01000018.1| GENE 5 2714 - 3601 1172 295 aa, chain - ## HITS:1 COG:XF2443 KEGG:ns NR:ns ## COG: XF2443 COG0388 # Protein_GI_number: 15839034 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Xylella fastidiosa 9a5c # 2 294 4 295 295 403 64.0 1e-112 MHEIRIGILQLRNTECVDDNKKKIAENITDLAQRGAQLIVLQELHNSLYFCQVEDVNNFD LAEPIPGPSTEYYGKLAQQLGIVIVTSLFEKRAPGLYHNTAVVIEKDGTIAGKYRKMHIP DDPAYYEKFYFTPGDLGFHPIDTSVGRLGVLVCWDQWYPEAARLMALQGAQLLIYPTAIG YESSDDEDEQQRQRNAWTTVQRGHAVANGLPVITVNRVGHEDDPSGQTNGIDFWGSSFVA GPQGELYYQACDDDEESVVIDIDLDHSEQVRCWWPFLRDRRIENYQDILKRYIDK >gi|281305875|gb|ADEF01000018.1| GENE 6 3704 - 4747 718 347 aa, chain - ## HITS:1 COG:XF2442 KEGG:ns NR:ns ## COG: XF2442 COG2957 # Protein_GI_number: 15839033 # Func_class: E Amino acid transport and metabolism # Function: Peptidylarginine deiminase and related enzymes # Organism: Xylella fastidiosa 9a5c # 3 340 18 355 363 275 42.0 6e-74 MDLQDITYYLPAEWEPQKAVQLTWPHAHTDWQPYLQDIVDTEVQLARVIARYQEVLIVTQ DVAATKRHFTTQECQRIRFVECPLNDTWARDHGFITLLSKDGKATPLLLDFQFNGWGNKF EASKDNLINQQLVAQNAVKGEYVDYNDFVLEGGSIESDGKGTILTTSLCLLAPNRNQPLT QQEIERKLLDRLHANRILWIDYGKLVGDDTDGHIDTTVRFAPDDTLLYIGTDDEEDEQYN DFKKMEQQLKTFRTIDGKPYRLLRLPIPPPIFYQGERLPATYANFVVINGAVIVPTYQQD ELDRQALDIIGTAFPHRDIIPIDATTVIKQHGSLHCLTMQQTLNFEL >gi|281305875|gb|ADEF01000018.1| GENE 7 5434 - 6057 469 207 aa, chain + ## HITS:1 COG:no KEGG:PRU_1419 NR:ns ## KEGG: PRU_1419 # Name: not_defined # Def: ABC transporter ATP-binding protein # Organism: P.ruminicola # Pathway: not_defined # 1 205 1 195 200 86 30.0 6e-16 MIEIKDATIKVGSHVVCQDLSFMVMNGQLTCVYAQETEVLEALLHAFLGLHPLESGYVSV DGESITPLSAPFFRQMMAYVPSKFEFGGISVSALFHLLVDMEAPARHEQKTALLRQWELL GVDKLCYEQQLCSLPDDVQQRIMLSFAGVLNRNIILLNQPTALQTPESVPLVLSFMQSMK AAGHLVLWTTTEEQVAEMADVIINLTP >gi|281305875|gb|ADEF01000018.1| GENE 8 6063 - 6848 577 261 aa, chain + ## HITS:1 COG:TM0193 KEGG:ns NR:ns ## COG: TM0193 COG0390 # Protein_GI_number: 15642966 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Thermotoga maritima # 1 252 5 261 263 63 22.0 3e-10 MDITFMQCILGLLLLLVPCYVFYVFNIPLLTKTLRSFLKMAGSLLVLGVLLYEVVALDKP FFSLLFSLLIIVWGAALSIVRAKLPLRQLFLPVLAGTFAGVLVVGMYVLLLVMGGANAFE PHYMIPVVAMLTGHLIHANSKALHVYYMGLRHHGQLYHYLLANGATHSHALGYLLRRAIQ QSALPSLSGMGWIVMGVSPLVMWGMLLGGASVLTAVACQLVLLIAMFTAAVLSIVVVVTI SHRYLLDDYAQLKRADRQKAS >gi|281305875|gb|ADEF01000018.1| GENE 9 7471 - 7692 265 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880224|ref|ZP_06288941.1| ## NR: gi|282880224|ref|ZP_06288941.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 73 1 73 73 119 100.0 6e-26 MQKRRKVMKMKKKYEKPVATILAIEDYMQVICSSGFENQTNFKVNEWGPTEETDANGESK AIDELPGWLSGNP >gi|281305875|gb|ADEF01000018.1| GENE 10 7749 - 9359 999 536 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880225|ref|ZP_06288942.1| ## NR: gi|282880225|ref|ZP_06288942.1| hypothetical protein HMPREF9019_1063 [Prevotella timonensis CRIS 5C-B1] # 60 536 1 477 477 882 100.0 0 MKHFFLSYKAITAALTMGLAAITTSCSQDIDNNSTHVKDCKAESSKIVKLSFGPSTRGTM YDEISQMADNATFGVYGYARKDGSPISTEPNFINNGSALKKDGIVRVGGKVATYKENMPK VKLAAVYPKLEGENNVFTRTGDNTYTLTYTLQKDMAKQHDLLIGEAPEFTITDDNTKNDL VNGEKIVNMHHALTAINFAIGDRVPTGYTIEGIRLTGLYTKGTCKVDLSKTTDADRFKWE NLSEKDKYVYIKTSHITTTQINRTQFTGLKTGNKYDNLTIFMIPQPIGDDAKAEVILKKD GKEYVSVRDEKGQKVTPENDTRVKIKRITIPLKRKDGKPYQAGEVEKYLVNSLTNKTNEK DSNISIEVVDPNNHESSNTYIYPNKESFCKKDGEKQNTYNVYINCYRYAVNTDKTKKHFN HAIIASNTFTIKSIEYKTYNEKTKKSDYTQLSGENVNCVTWKITKQPKGDDTIGSFSLTF DPSKYPIVEDKPKKGVKQEHKFGTKESMDKFRITLVADGFEGKYEKLALIPQHKFL >gi|281305875|gb|ADEF01000018.1| GENE 11 9463 - 10764 734 433 aa, chain + ## HITS:1 COG:no KEGG:BVU_1598 NR:ns ## KEGG: BVU_1598 # Name: not_defined # Def: transposase # Organism: B.vulgatus # Pathway: not_defined # 1 431 1 424 429 342 43.0 2e-92 MTKVAIKNENITSFGGIYHIMDVFSKLGFEKLTESVLGKRGSSGKAFSHGSIFGSLFFSY LCGGECLEDINALIGQFKQRPDTLLPGADTVGRGLKELAEENIIYKSEISSKSYSFNTAE KLNTLLLRMIRRMRLIKVGSHVDLDFDHQFVPAHKFDAKYSYKQDLGYFPGWASIGGIIV GGENRDGNTNVKFHQEDTLRRIMDRVTSELGVVIERFRADCGSFSKEIIQTVEQRCNTFY IRAANCGSRYENFQQLKEWKDVEVGYEKCDVTSISIDSLIEGKSYRLVVQRSPLKGKDGS EQTDMFGVIYTYRCILTNDWVSTEKDIITFYNERGAGEKNFDIQNNDFGWSHLPFSFMAE NMVFMMVTAKLKNFYLYLVRHISEKVKPLKKTSRLKAFILHFVSVPAKWVRTGRQNVLNL YTNKTYYAEVFIE >gi|281305875|gb|ADEF01000018.1| GENE 12 10939 - 12177 705 412 aa, chain + ## HITS:1 COG:ECs0602 KEGG:ns NR:ns ## COG: ECs0602 COG5433 # Protein_GI_number: 15829856 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Escherichia coli O157:H7 # 35 375 3 345 378 147 32.0 4e-35 MKEKQPLDQTNGIVANTINHTAKVSKNSKLEGSILEKLYEFSSSIPDFRRAEKGNIRHKL SDIIMLLILGRVSNCVSRAEIIEFGKHNLKSFRKLDILVNGIPSEATLCRMEEGIDDQAM ANQLQVFAETFHKELVGMCCTQEIICIDGKAERGTVLKNGRNPDIVSAHSFNTDITLATE ACEEKSNEIKAVPLLIDKIDISGKIVTADAMSMQKDIVDKIREKNGDFIIELKSNQRSLR YGVEDKIKELSPVYSYCGEPELGHGRIETRSYRVFDGTDLIANKEKWNGNLTIIEYECET VKKSTGNCTTEKRLHVSSLPANTPRLGTPVRNHWSIESMHWGLDRNLLQDKIKRKSARAA RNLDTIQRIVYSVFSIWRGRRKKKSDKRKGMAELMRHISLCFTKLLHFLYQK >gi|281305875|gb|ADEF01000018.1| GENE 13 12324 - 13274 514 316 aa, chain - ## HITS:1 COG:no KEGG:PRU_1447 NR:ns ## KEGG: PRU_1447 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: P.ruminicola # Pathway: not_defined # 4 312 2 309 311 360 56.0 3e-98 MTYVLSLLLGIFTVVELNCENLFDCQHDSLKHDEQFLPTSDYHWTPHRYWTKVNRIGQTI LSCGESANGWSLPDMVGLCEVENDSCLVALTRRSLLRHARYEYVMTHSPDERGIDVALLY SPFSFQLLDWRAIPIHPVKDMRPTRDVLYARGRIVTGDTLHVFVVHAPSRMGGEPFTRSH RRIVGDILLQAIDSIQSVSTRPRILVMGDFNDYSSDKNILRLVQSGLVEVSANAKGTHGA KATYRFRGEWGSLDHIFLDKSSAALVQECYVHDAPFLLEKDEKYGGVKPRRNYQGPRYLN GFSDHLPLVMRINWQK >gi|281305875|gb|ADEF01000018.1| GENE 14 13285 - 14175 732 296 aa, chain - ## HITS:1 COG:BS_ybfH KEGG:ns NR:ns ## COG: BS_ybfH COG0697 # Protein_GI_number: 16077290 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 5 287 10 292 306 155 38.0 7e-38 MWFYHVVAFLTVAIWGSTFISTKVLIQSGISPAEVYTLRFLIAYVLMLLFFHKHIFARTW KDELLMAGLGLTGGTVFFLAQNVALGYSTAMNVSLIVCSCPLFTMLLHRIWFRSEPLGKW QIIGTAFSFVGMAAVVLNGQLVLNLSPLGDSLALLACISWAVYSLLLKKANEKYPTTFIT RKVFFYGLLTVLPYYAFEPGFPSVETLMQPKILYNLLFLGAIASMLCFWLWTWVMLRLGA LQATNYVYVNPVTTIIFAAWILHEEITVYFVVGTALILTGLYLSSRKQPLRFGKSI >gi|281305875|gb|ADEF01000018.1| GENE 15 14220 - 15002 789 260 aa, chain - ## HITS:1 COG:no KEGG:PRU_1171 NR:ns ## KEGG: PRU_1171 # Name: tyrA # Def: prephenate dehydrogenase (EC:1.3.1.12) # Organism: P.ruminicola # Pathway: Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:pru00400]; Novobiocin biosynthesis [PATH:pru00401]; Metabolic pathways [PATH:pru01100]; Biosynthesis of secondary metabolites [PATH:pru01110] # 1 260 1 260 264 430 80.0 1e-119 MRILVMGAGKMGSFFIDLLSFDHQVAVYEKDAQRMRFTYNCQRFTSLAEIRDFEPELVIN AVTVKYTIAAFQEVMPYLPTGCILSDISSVKTGLKAFYDSTPHPYVSTHPMFGPTFANLH QLSQENAIVISEGDYMGRIFFKELYRGLGLNIYEYTFDEHDQTVAYSLSIPFVSTFVFAA VMKHQDAPGTTFKRHMQIARGVLNEDDYLLQEILFNPYTHDQVSQIREELKELLQVIDDK DAEGMKKYLTKIRQNMREDL >gi|281305875|gb|ADEF01000018.1| GENE 16 15157 - 16221 950 354 aa, chain - ## HITS:1 COG:PAB0297 KEGG:ns NR:ns ## COG: PAB0297 COG2876 # Protein_GI_number: 14520663 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Pyrococcus abyssi # 19 255 29 258 265 152 35.0 7e-37 MELDLLPLNLQSDVKRPFVIAGPCSAETEQQVMETAWQLKRKGCHNFRAGVWKPRTKPGC FEGKGEEALSWLRRVRQETGMLVSTEVATPQHVELCLKYELDFLWVGARTTTNPFAMQAL ADALQGVDIPVFVKNPVNPDLELWMGAMERLNRAGVQRIAAIHRGFSNYEKSMYRNLPMW QIPIELHRRIPQLPIICDPSHIGGKRELIAPLCQQAMDLGFEGLIVESHCNPHSAWSDAK QQVLPEELDAILSKLVVRDEYTTTDDLQNLRAEIDQLDDQLMNLLSKRLRICREIGQYKK EHNLTVLQSNRYSEILEKRGKQGVQYGLSAESVANIFEEIHQESVRQQLKIINS >gi|281305875|gb|ADEF01000018.1| GENE 17 16354 - 17523 1016 389 aa, chain - ## HITS:1 COG:aq_273 KEGG:ns NR:ns ## COG: aq_273 COG0436 # Protein_GI_number: 15605813 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Aquifex aeolicus # 6 387 5 385 387 266 36.0 4e-71 MNIQPAQRVNQIQEYYFSKKLKEVAQLQASGNDIISLAIGSPDMPPSHQTVQKLCEVAND VSTHGYQPTCGTPELRQAMARFYEKWYGVRLNPQTEIQPLIGSKEGILHVTLAFCNPGDA VLVPNPGYPTYTSLSKLLGVQVLNYDLREENAWQPDFDELEQMDLTKVRLMWTNYPHMPT GGNAQLETYEKLVTFAQKHNIVIVNDNPYSFILNDRPLSIMQVEGAKNCCIEFNSMSKSF NMPGWRVGLCASNATYISWILKIKSNIDSGTFRGIQLAAAEAYNTNDEMWHYINNVKVYK ERRKIAEKIMQVLGCRYDHAQVGMFLWGRIPAKYKDAEQLTERVLHKSNVFITPGFIFGS NGKRYIRISLCAKETKMNEALMRLQAMAW >gi|281305875|gb|ADEF01000018.1| GENE 18 18027 - 18617 443 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880233|ref|ZP_06288950.1| ## NR: gi|282880233|ref|ZP_06288950.1| hypothetical protein HMPREF9019_1071 [Prevotella timonensis CRIS 5C-B1] # 1 196 3 198 198 379 100.0 1e-104 MKKTTIFLAFLLLGATSNMSAQQPNKKKKTFEEKVSKFVKQTKKELEQAGHELGDAIGFD DRLYSKADLLRVNGSYYMPLYSTDIYKGDSALEFRTQCTKLFRQKYPKANILSVAIPQKD WTLEKIEKDDEIVGYRKTLHCFVIARDGDEGYINAKFTYGQSKKVGHDFVRSVAEWPKWE RTDVLTTSVYQQLLKL >gi|281305875|gb|ADEF01000018.1| GENE 19 18792 - 19481 601 229 aa, chain + ## HITS:1 COG:no KEGG:PRU_1254 NR:ns ## KEGG: PRU_1254 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 52 207 32 186 197 110 41.0 3e-23 MPIGALENKKQLPSKTEKTDTVTFVQPHTAGASAQPLVNGYLPALPTTDSDSLHLPTLNL QGQVISNYWYPYYGTGWYGWDLHQGLNVNLGASVFGFIGKNAPSGAGFTQNVSAMYAMPL NKNLSLAVGGYLNRLSWSHQSYHDAGLSAVLGYRFNERWEAYLYGQKSLYQTMPMFRPLY DMTSMGDRLGAAVKYHFNPSFSIQLSVERGWMPNNRHTYFDQYNYPVPK >gi|281305875|gb|ADEF01000018.1| GENE 20 19505 - 21430 1321 641 aa, chain - ## HITS:1 COG:alr1627 KEGG:ns NR:ns ## COG: alr1627 COG2217 # Protein_GI_number: 17229119 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Nostoc sp. PCC 7120 # 1 638 1 745 753 357 34.0 5e-98 MMKKTIPVVGMACAACSAHVERTLNSLQGVHSAAVSLPGRSALVDYDEQVISPEEMKRAI NNIGYDLVIDEEQSVEAIEQNEYSLLRRKVILSWIFAVLCMAVSMRWIDLGAKNIVNQVA LLLALANFICCGRAFFTNAWRQLVHRSANMDTLVALSTGIAFLFSVFNTFVGEQVWGSRG IECHTYFDASVMIITFVLTGRLLEEKARNSAASSIRQLMGLSPKTAHLVQGDSLQEVPLA TIKIGDTVEVRAGEKIPVDGIVTSATSFMHSTGVYVDESMITGEPTPVLKCEGGDVLAGT VVSQGKFQFKARQVGEHTALAQIIQMVQQAQASKAPVQRIVDKVALVFVPVVLLLALLTF VLWWVVGGNALLPHAILSAISVLVIACPCAMGLATPTALMVGMGKAAQMNVLIKDATALE ALRSVDAMVVDKTGTLTIPNQQIDFTEADDLSFEARETLKPHAREAMEILQKQENIAVYM MSGDRHDTVKYWAEHAGISHFYSKVLPQDKENLVHQLQNEGKKVAMVGDGINDTQALALA DVSIAMGKGTDVAMDVAQVTLMSDDLRRIPQAIRLSKQTVQMIWQNLFWAFVYNLSCIPL AAGVLYIFGINFQITPMWASVLMAFSSVSVVLNSLRLKYKK >gi|281305875|gb|ADEF01000018.1| GENE 21 21504 - 21713 232 69 aa, chain - ## HITS:1 COG:no KEGG:BL01899 NR:ns ## KEGG: BL01899 # Name: copA # Def: Cu2+-exporting ATPase # Organism: B.licheniformis # Pathway: not_defined # 2 69 73 140 811 61 45.0 8e-09 MEKKTFTINGMACEHCKSMVEKRLSCLIGVESAKVDLAHHTAEVAYDEELISPTEMKKAV DEAGYDFQV >gi|281305875|gb|ADEF01000018.1| GENE 22 21900 - 23270 1157 456 aa, chain - ## HITS:1 COG:MA1121 KEGG:ns NR:ns ## COG: MA1121 COG0534 # Protein_GI_number: 20089987 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Methanosarcina acetivorans str.C2A # 10 441 14 451 475 220 32.0 4e-57 MLQRRDNYTFLTQESIRRVILTMAVPTIASMLVTSLYNVADTYFVGKINTQAVAAVGIVF SVMFVIQAFSFFFGNGSGNYMARELGAQRRHHAQIMASTAFVYAIASGLVIMVVGLLFLE PLSVWLGSTPTILPYTKRYLGIILLGAPLMTGSLCLNNQMRFQGNASFAMWGIVSGAIIN VGLNPIFIFLFDWGITGAALATVLGQLVSFLVLLYMTHYGGSMRISFRYFSFSWVYVKEI LAGGTPSLSRQGLTSVASILLNVAAAQYGDAAVAAMSIANRFTMIVMASVIGLGHGFQPF CGFNYGAHLYSRVRRGFWFSVQVGTCFLLACSVLGWVFSDGIVELFRNDIEVINIGTKAL RWQLVSLPAMAFFLMSNMLMQTIRKTFRANLLAASRSGLFFIPLVVILPQFLGLQGVMMS QACSDICSLLITLPLLYATFRELAQAQKNDANHQTS >gi|281305875|gb|ADEF01000018.1| GENE 23 23400 - 24173 681 257 aa, chain - ## HITS:1 COG:all0475 KEGG:ns NR:ns ## COG: all0475 COG4221 # Protein_GI_number: 17227971 # Func_class: R General function prediction only # Function: Short-chain alcohol dehydrogenase of unknown specificity # Organism: Nostoc sp. PCC 7120 # 2 248 8 255 257 267 53.0 2e-71 MIAFITGATSGIGQACAFAFAKSGYHLILTGRKQERLEALKQELAAFPVQVLCLCFDVRH REEATKAVESLDEKWRNIDVLVNNAGLALGLEPEYEGSFDDWDTMIDTNIKGLLTMTRLI VPGMVARNRGHVINIGSVAGDVAYANGNVYCATKAAVKALSDGLRVDLVDTAVRVTTVKP GLVQTNFSVTRFHGDQDRAHHVYEGIQPLTGEDIADVVLYAAQAPQHVQIAEVLVLATHQ ANGFTISRNPDRKESLS >gi|281305875|gb|ADEF01000018.1| GENE 24 24251 - 25342 909 363 aa, chain - ## HITS:1 COG:PAB0379 KEGG:ns NR:ns ## COG: PAB0379 COG0381 # Protein_GI_number: 14520765 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Pyrococcus abyssi # 1 360 1 360 381 189 34.0 7e-48 MNICIVTGARPNFIKVAPIIRAINKAANEGRDITYQLVYAGREDDPTLENSLFDDLQMPR PDTYLGVDCDNLNELTGCVMAGFEHYLQSYPTDVVIVVDDLASTLAAAIVTKKQGITLAH LVAGTRSFDINMPKEINRLVIDGLSDLLFTAGMKSNSTATREGAEQSKIYLVGNILMDTL RYNRNRLQRPTILSQLNIEDGSYLVFTLNRKALLSNEELLRSLLRVIGDKCGGRKIIAPL RGRAAQVVKRLIGDDYPAFQLIEPLTYLQFGYLTAHACGIITDSGNVAEEATFHGVPCIT LNRYTEHIETVKEGSNVLVGEDTTLLAQAMDQMVAGEWKKSSIPDRWDGRSAERIVQILL EHK >gi|281305875|gb|ADEF01000018.1| GENE 25 25520 - 25765 108 81 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTSLHDPLATSNTGSSKSMNLYFLMSNGKSFSVCFSPLKIIGVKPKTSLLPYGYALGCL DVGAKRTTLSRHAYCRKQHYR >gi|281305875|gb|ADEF01000018.1| GENE 26 26024 - 26974 1202 316 aa, chain - ## HITS:1 COG:FN1549 KEGG:ns NR:ns ## COG: FN1549 COG0330 # Protein_GI_number: 19704881 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Fusobacterium nucleatum # 7 312 7 293 294 237 49.0 2e-62 MIATYVLVAIVVLALIFVKQAIIIIPQSETKIVERLGKYYATLSPGINVIIPFIDRAKTI VTMTRGRYIYSTNIDLREQVYDFDKQNVITKDNIQMQINALLYFQIVDPFKAVYEINNLP NAIEKLTQTTLRNIIGELELDQTLTSRDTINTKLRAVLDDATNKWGIKVNRVELQDITPP ESVLQAMEKQMQAERNKRATILTSEGEKQAAILQSEGEKTSTINRAEATKQQAILYAEGE ATARIRKAEAEAIAIQKITEAVGKSTNPANYLLAQKYIAMMQELASGDKSKTVYLPYEAT NLLGSIGGIKDLFKTE >gi|281305875|gb|ADEF01000018.1| GENE 27 27007 - 27459 338 150 aa, chain - ## HITS:1 COG:TM0865 KEGG:ns NR:ns ## COG: TM0865 COG1585 # Protein_GI_number: 15643628 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Membrane protein implicated in regulation of membrane protease activity # Organism: Thermotoga maritima # 10 147 4 138 140 70 32.0 1e-12 MFEYLSQHLWLVWIIISMLCLIIELGSGDFFVTCFALGALVAMISALVDLPIWLQVIIFA VGSVLSIVFIRPPLLHALHASGETRASNAEALIGRKGTVVETIHANGSGYVQIDGDVWKA VSSDLSQIESGERVRVIKMDSIIVTVEPCL >gi|281305875|gb|ADEF01000018.1| GENE 28 27883 - 28803 683 306 aa, chain - ## HITS:1 COG:CC0877 KEGG:ns NR:ns ## COG: CC0877 COG0501 # Protein_GI_number: 16125130 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Zn-dependent protease with chaperone function # Organism: Caulobacter vibrioides # 26 261 25 248 251 131 33.0 2e-30 MNKVKILLFSLVTTLLVACGTTRTVPITGRHQSLMVSDEQVLSLSNQEYRKFIASAKLSS NANQTAMVKRVGHKLANAVETFFRTNGLSNELSHYSWEFNLVTDKQVNAFCMPGGKIVVY EGLLPYTQNEAALAVVLGHEIAHAVARHSAEQMSAQIRNNVGVQVLGDALGAMGVGSTTT QLAQIVAQQGLQFRSLKYSRAHEMEADKMGIIFAAMAGYDPREAIPFWKRMSSGQQAHSD MFSSHPSDSKRIAALEREMPTALTYYHGHGKTAAPVLKKSTKQRFKSQSNSNVKSVSVSD LYKNTQ >gi|281305875|gb|ADEF01000018.1| GENE 29 28929 - 29144 169 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302482872|gb|EFL45889.1| ## NR: gi|302482872|gb|EFL45889.1| hypothetical protein HMPREF9296_1373 [Prevotella disiens FB035-09AN] # 1 67 1 71 410 78 57.0 2e-13 MTSEPINQYTEICKNAIKSSSAKLGKTFESLLLAKLLSFTVIQRKINVTQMECYGTHCEQ VYRTNFNLSRA >gi|281305875|gb|ADEF01000018.1| GENE 30 29273 - 29422 128 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHNKDEKKALQLYEELQRRKAMFYLPGETEMALSIAEQIAKAQPVVNKS >gi|281305875|gb|ADEF01000018.1| GENE 31 29647 - 30273 453 208 aa, chain + ## HITS:1 COG:no KEGG:BDI_1981 NR:ns ## KEGG: BDI_1981 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 207 1 205 209 99 32.0 6e-20 MEEKKISEQESLELITRMINQTKKDLSVGNGDSFLIWGYLSAAISLAVIVMLRATDDPKC GWLYLAIPIAGFAVSSIKTYMAKRKSHVASTYASNTINKVWAIISAVFAVYALDCLLHFG EVRSWNGMFLLGMLLPGIGTYTTGVILKEKSIQICGLLGVVIGTGWLRNFASGEQVISIM QMGLMVLSFVITLVIPGHILNFKAKKQQ >gi|281305875|gb|ADEF01000018.1| GENE 32 30273 - 30557 295 94 aa, chain + ## HITS:1 COG:CC2206 KEGG:ns NR:ns ## COG: CC2206 COG1846 # Protein_GI_number: 16126445 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Caulobacter vibrioides # 4 87 10 93 103 67 41.0 7e-12 MKELDPLLHSQLRLAVMSILLNVEKADFNYIKEKTESTAGNLSVQLDKLVTAGYISKTTD GSGVKPRTICKMTGTGRNAMMKYVEALKTYFAGL >gi|281305875|gb|ADEF01000018.1| GENE 33 30700 - 31026 161 108 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|261878817|ref|ZP_06005244.1| ## NR: gi|261878817|ref|ZP_06005244.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] # 1 108 1 107 107 113 59.0 4e-24 MKIHDTLITIVFASFLCSCESVQSLEGLVVDVHNVPLDSVLISDDLMNFRMRTDSLGRFR YMIMLPTTSRGIDTKFSFSKKGFIDHSQTIKVYRSTKVIVVMDKDTPE >gi|281305875|gb|ADEF01000018.1| GENE 34 31092 - 32003 894 303 aa, chain - ## HITS:1 COG:aq_046 KEGG:ns NR:ns ## COG: aq_046 COG0167 # Protein_GI_number: 15605646 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Aquifex aeolicus # 4 299 3 300 306 300 49.0 2e-81 MATLNVKINDIDFKNPILTASGTFGYGLEYADLVPLEQLGGIIVKGTTLHHREGNPYPRM AETPFGMLNCVGLQNKGVDYFCREIYPKIKDIDTHMLVNVSGNTPDDYAACAARIDELDK IPAIELNISCPNVKAGGMAFGVTCAGAASVVKAVRQAYHKTLIVKLSPNVTNIADIAMAC EAEGADSVSLINTLMGMAIDIERRKPVLSIATGGLSGPAVKPVALRMVWQVAKAVKIPVI GLGGISSAEDAIAFMMAGATAIQIGTANFVDPTITLQVRDGINQWLEQHGCASVTEIIGA LDD >gi|281305875|gb|ADEF01000018.1| GENE 35 31991 - 32767 582 258 aa, chain - ## HITS:1 COG:BS_pyrDII KEGG:ns NR:ns ## COG: BS_pyrDII COG0543 # Protein_GI_number: 16078617 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases # Organism: Bacillus subtilis # 8 254 6 254 256 172 39.0 6e-43 MKKICEDLLVHSLEQLSSRHWLMRLRSSSQLPEMVPGQFVQVKVDHSPSTYLRRPISINM VDYEKNELLLLIAAVGEGTRQLVRLQPGERVNCLYPLGNGFTMPSSPKENCLLIGGGVGT APLLFLGRRIAEMGAQPTFLLGARTSSELLEKDMFRKYGELYLTTEDGSEGESGFVTGHS ILRQKRFDRIATCGPKPMMLSVARYAKRENITCEVSLENDMACGLGACLCCVENTTEGHI CVCKKGPVLNIKKLLWPL >gi|281305875|gb|ADEF01000018.1| GENE 36 33029 - 33574 353 181 aa, chain - ## HITS:1 COG:no KEGG:PRU_0541 NR:ns ## KEGG: PRU_0541 # Name: not_defined # Def: DNA-binding protein # Organism: P.ruminicola # Pathway: not_defined # 27 181 1 161 162 130 46.0 3e-29 MSNLMFIFVKSTKISELTSKSKLMDEMKDRIRQLMLAQHMNQQSFAEVLDISPASLSSIF NDRTKPTLNHIDAIKSKFPSINLDWLMYGKGSMFLDDASHDELKNSNVTTQLQPTLDFDD TSSIDTHPSARQVASVPPMSANPASSSQQINLNFLDKKERKITEIRIFYDDQTWETFVPK K >gi|281305875|gb|ADEF01000018.1| GENE 37 34064 - 34165 74 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKIRKFKSNLRDGPEYESYEKISTNFMLTISC >gi|281305875|gb|ADEF01000018.1| GENE 38 34268 - 35209 978 313 aa, chain - ## HITS:1 COG:BH1337 KEGG:ns NR:ns ## COG: BH1337 COG1466 # Protein_GI_number: 15613900 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Bacillus halodurans # 2 205 23 233 342 59 25.0 8e-09 MGDESYYIDKIADYIAEHVLQPEQRDFNQNIIFGADVNAAQIIDLSKGYPMMADYRVVIV KEAQNLKDTELIAKYLENPVRSTILVLCHKNGTIDSRKRLIKKADALGIVFESKKMRESD LPNFILSYLKNKNIAIDFKSSVMIADHVGADLNRLISVLDKVLISLPENVREIDPTLIEK QIGVSKDFNAFELRAALINRDIFKANQIIKYFDNNPKAGSIYSFLPLLFNYFQNLMIAYY APSKTDNAVAQYLELRGGWAARDYMSGMRNYSGKKTMQIISKFREIDAKSKGINNPNTST GDLMKELIFFILH >gi|281305875|gb|ADEF01000018.1| GENE 39 35446 - 35895 261 149 aa, chain + ## HITS:1 COG:no KEGG:PRU_0539 NR:ns ## KEGG: PRU_0539 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 149 1 149 149 192 60.0 2e-48 MFRLNLPQYQIKLGGTKDKPTIFDILRRRYVALTPEEWVRQHFIHYLIEHKNYPMSLLAN EISLKIADKTLRVDSILYDLTLKPRMIIEYKAPHIPITQKVFDQISTYNFLLHVDYLIVS NGIESYCCKMNYEHKNYIYMDSIPNYQDL >gi|281305875|gb|ADEF01000018.1| GENE 40 36007 - 37245 620 412 aa, chain + ## HITS:1 COG:no KEGG:TDE0471 NR:ns ## KEGG: TDE0471 # Name: not_defined # Def: BNR domain-containing protein # Organism: T.denticola # Pathway: Other glycan degradation [PATH:tde00511]; Sphingolipid metabolism [PATH:tde00600] # 42 401 139 504 543 233 40.0 1e-59 MKIFRLISFLWLLSTGLVVQASNNQHHQQLLFETDSVNKIPYRIPAIAQCRNGNLIAVSD FRYCGSDIGYGAVDLVYRISKDYGITWSPISKLADGHGDENRIQWDYAFGDCGLVANRTN SEVLAVCVAGKTVYFQGKRNNPNRVAVFRSNDNGKTWDKGHEITEQIYRLFDGRKQGPIQ SLFFTSGRIHQSRYVKVGKYFRLYSGLCTLSGNFIVYSDDFGHQWKVLGNIDESPCKDGD EVKCEELPDGSLILSSRTEGRMFNIFTFTNIKKGEGHWDSRQTASDMAHIKNQCNGEILV LPVIRKSDGQETYLALQSVPFGPQRTNVGIFYKEIGKEHLSALEFASHWKRGMQVHHGPS SYSTMIAQKDGRIGFLCEVGQKNNHISYQSLDVEEITNNEFVLSKKRFKKGY >gi|281305875|gb|ADEF01000018.1| GENE 41 37312 - 38127 714 271 aa, chain + ## HITS:1 COG:Cj0954c KEGG:ns NR:ns ## COG: Cj0954c COG1076 # Protein_GI_number: 15792283 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-domain-containing proteins 1 # Organism: Campylobacter jejuni # 75 267 58 252 256 63 26.0 4e-10 MATGKWIGGLLGFLQGGALGALAGFALGWLFDNEIDAVNEPYQNREHGQTQTHTNQRDSQ WQRVQAERQRNSFLFSFLALASYIIRADGKVMHSEMELLRNFLRQNFGAIAVKQGEDIVL KLFEQQKQMGWQRFQSTIQQACLEIRSQMAYPERLQLLNFLAIMAQVDGHVVTEEINVLK EVAINLGLSATDVDSMLNLKDSSSSLEAAYRVLGVSPSASNEEVKNAYRQMALKHHPDKV STLGDDVRKAAQKKFQEINNAKDKIYKARGL >gi|281305875|gb|ADEF01000018.1| GENE 42 38404 - 39234 1040 276 aa, chain - ## HITS:1 COG:no KEGG:BT_0883 NR:ns ## KEGG: BT_0883 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 2 268 5 272 276 263 68.0 7e-69 MAKKDPTDLSVEEKLKTLYELQTTLSSIDEKRALRGELPLEVQDLEDETEGLTTRMEKIQ TEIDEFKKAISQKKADIANAESSVERYKKQLDEVKNNREYDTLTKEIEFQSLEIELCNKK IKEALIKIEEKEADLKEAEALLSDRKVALKEKKGELDEIMQETRDEEEELKEKAKGLEVM IEPRLLSSFKRIRKNARNGLGIVYVQRDACGGCFNKIPPQRQLDIKMHKKVIVCEYCGRI MIDPELAGVEVEKTAVEEKPKRKRTVRKTAKKDEEA >gi|281305875|gb|ADEF01000018.1| GENE 43 39319 - 40107 609 262 aa, chain - ## HITS:1 COG:L84937 KEGG:ns NR:ns ## COG: L84937 COG0327 # Protein_GI_number: 15673055 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 231 1 227 257 124 34.0 2e-28 MKIKEVVSALERFAPLPLQADFDNAGLQVGLTEAELSGALLCLDVTEPIVDEAVALGCNL IVAHHPLIFRKLACISNQNYVQRTVMKAIQNHITIVAMHTNMDSAKGGVNYKIAEKLGLQ NLSFIGKEQIVEGVTGGEGIIGTFAEGLAADDFISLLKRVFEVECVQANQLLRRPIKRVA LCGGSGAFLLSEALHAGADAFVTGEMSYHDFFDMEQRIQLAIIGHYQSEQFTSEIFKEII QKQFPEAHCCISSINTNPIIYF >gi|281305875|gb|ADEF01000018.1| GENE 44 40118 - 40354 162 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPQALCMRLQEIISQSTLVVSLLAGCVDERMRFERCVSNYYFRQSRVAKIVPEKRKIKLK IEAKLRVCSENIIFATAK Prediction of potential genes in microbial genomes Time: Sat May 28 06:43:33 2011 Seq name: gi|281305849|gb|ADEF01000019.1| Prevotella timonensis CRIS 5C-B1 contig00036, whole genome shotgun sequence Length of sequence - 29403 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 14, operones - 6 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 82 - 2790 2401 ## COG0210 Superfamily I DNA and RNA helicases - Prom 2821 - 2880 5.7 + Prom 2778 - 2837 3.9 2 2 Op 1 . + CDS 3007 - 3912 753 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 3 2 Op 2 . + CDS 3994 - 4335 357 ## RB2501_09240 hypothetical protein 4 3 Tu 1 . - CDS 4332 - 4745 491 ## COG3152 Predicted membrane protein - Prom 4766 - 4825 6.4 - Term 4884 - 4921 0.3 5 4 Tu 1 . - CDS 4941 - 6929 1802 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase - Term 6936 - 6979 5.0 6 5 Op 1 . - CDS 6989 - 7780 863 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 7 5 Op 2 . - CDS 7804 - 9411 1458 ## COG3525 N-acetyl-beta-hexosaminidase + Prom 9804 - 9863 7.0 8 6 Tu 1 . + CDS 10071 - 11318 1132 ## COG2262 GTPases + Term 11439 - 11476 5.2 9 7 Tu 1 . - CDS 11377 - 11793 64 ## - Prom 11814 - 11873 3.1 + Prom 11561 - 11620 5.4 10 8 Tu 1 . + CDS 11781 - 12239 189 ## Fjoh_2186 transposase IS200-family protein + Prom 12328 - 12387 5.8 11 9 Tu 1 . + CDS 12526 - 14382 1850 ## PRU_0114 hypothetical protein + Prom 14385 - 14444 1.7 12 10 Op 1 . + CDS 14557 - 17463 2496 ## COG0612 Predicted Zn-dependent peptidases 13 10 Op 2 . + CDS 17524 - 19173 460 ## PROTEIN SUPPORTED gi|169634422|ref|YP_001708158.1| fumarate hydratase + Term 19252 - 19290 8.6 + Prom 20253 - 20312 3.9 14 11 Op 1 . + CDS 20345 - 21763 1152 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 15 11 Op 2 . + CDS 21790 - 22821 950 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D 16 11 Op 3 . + CDS 22885 - 23808 793 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Prom 23824 - 23883 2.7 17 12 Tu 1 . + CDS 23979 - 24509 531 ## PRU_1022 hypothetical protein + Term 24538 - 24583 -0.7 + Prom 24515 - 24574 3.3 18 13 Op 1 . + CDS 24606 - 25505 546 ## BT_0059 hypothetical protein 19 13 Op 2 . + CDS 25550 - 26044 368 ## BT_0074 hypothetical protein 20 13 Op 3 . + CDS 26077 - 26343 332 ## PRU_2121 hypothetical protein 21 14 Op 1 . - CDS 26424 - 27023 522 ## BT_1495 siderophore (surfactin) biosynthesis regulatory protein 22 14 Op 2 . - CDS 27027 - 28370 1024 ## COG1253 Hemolysins and related proteins containing CBS domains 23 14 Op 3 . - CDS 28383 - 28802 377 ## COG0629 Single-stranded DNA-binding protein 24 14 Op 4 . - CDS 28831 - 29385 354 ## PRU_0882 hypothetical protein Predicted protein(s) >gi|281305849|gb|ADEF01000019.1| GENE 1 82 - 2790 2401 902 aa, chain - ## HITS:1 COG:SA1721 KEGG:ns NR:ns ## COG: SA1721 COG0210 # Protein_GI_number: 15927479 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 16 469 12 410 730 107 24.0 1e-22 MQNDNLPNSLTPDQYQTEVIQASGGYHLVLAAPGCGKTQILTERIRRAHEQGISFDEMLC LTFTNRAARGMRERIETHINDEEIAELYVGNVHRFCSKFLFDNSLVPAESSVIDDDDAFS ILARYRDEDEYAVQHNFRLKKEYIEVLHFAGFIHQLTHHHPKLLRLHPECVTSLDVAALR TLCRVQRMELTADTLQEVFKNANTYESLIHSDAYDIGSQHDIEALLRKMQQAKYYIQYKR ENKLLDFEDLLMLTYDALNADDQLELKRYRWIQVDEVQDLNPLQLALIDSFTSKDFHTVM YLGDEQQAIFSFMGAKMSTLDALKQRCEGHLHRLFVNHRSPGYLLQVFNTFAEKMLDIDP ALLPTTDFDPPRLGDELQLMLSEQVESEYADVADKVQRLQVQYSQETTAVIVSSNADAEL MSEALAQKNLPHFKVSGEDVFASSEVKLLLAHLNILCNEHQFIGWSRLLKGLQVFESNAA ARRFVRGLFDNAMLPSDLLMFPNSSYVQAFVECYEHEDIVVFDTETTGLNVFEDDIVQIA AVRMRQGCVVPGSEFVVFMRTNREIPRKLGNIDNPLIEEIQHHQLYSPSEGLKMFLEYVG NSRLLGHNADYDYHILNFNLQRYLPDIQLEERCNMYFDSLKLIRLLEPNLKEYKLKYLLS VLHLEGQNSHLADADVHATCSVVRHCYEKAKLHINSQREWIQHPRFQQRAAVFRKRYLEI YTHAHQLLYQRQHSEHLPVLASEIAYLYRTLCEQGLLQTIEKLPHVIKYLSADMIDEDAY PSLIEQLSVYINEINTLKEADLCHGTSLDERIFVTTVHKAKGLEFDQVVLFDAVDGRYPN YFNRDNVRLVAEDKRKFYVAMTRAKQRLYVSWSRNRADYHNQLQPRYLTPFMKPLLHFFE NI >gi|281305849|gb|ADEF01000019.1| GENE 2 3007 - 3912 753 301 aa, chain + ## HITS:1 COG:BH0390 KEGG:ns NR:ns ## COG: BH0390 COG0697 # Protein_GI_number: 15612953 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus halodurans # 6 295 3 292 311 62 24.0 1e-09 MIKKQQKIQAHTAIILANVIFGLGVPVTKLLLDQWVTPMGYMFMRCLGAAVIFWAISLFL PKETVQRKDLFIIMLGGLLGFVISQTLTAWALVYTTPVYFSLIATLTPVATMLMAALFLK ERMNGTKIFGVLIGIVGALLMVLMSWKSGSGKNDLLGITLTILSLMTWVVYLLITRNVSQ KYTAVTQMKWIFLISTLAVLPFAAPEFDQQRLWSSQWAWSGVIEMTFIVVFATVIGYFAI PYAMRYLQATTVSIYTNLQPVVASFVAIYIGQDILTWDKPVAGILVLLSAYIITIRKSDG N >gi|281305849|gb|ADEF01000019.1| GENE 3 3994 - 4335 357 113 aa, chain + ## HITS:1 COG:no KEGG:RB2501_09240 NR:ns ## KEGG: RB2501_09240 # Name: not_defined # Def: hypothetical protein # Organism: R.biformata # Pathway: not_defined # 11 104 56 153 157 68 43.0 5e-11 MLIIHNRLIPFKKYDAINLFGLLFCRKGTTITADLIQHERIHTRQMIEMGFIFFYLFYVI EWLIRIPMKGCAYLNISFEREAYRHMDDPNYLIHRKPYAWVKYLRREPQNNIN >gi|281305849|gb|ADEF01000019.1| GENE 4 4332 - 4745 491 137 aa, chain - ## HITS:1 COG:PA0563 KEGG:ns NR:ns ## COG: PA0563 COG3152 # Protein_GI_number: 15595760 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pseudomonas aeruginosa # 19 136 5 116 117 83 45.0 1e-16 METNTTPQATPTLSFGEAIKQVFNKYATFTGRARRSEYWYFVLFGTLAGMVAYILDFALG LTFTDIGYGPLYLLVSLGLLIPGLAVAVRRLHDINKSGWNYLWVLIPIVGGILLIVWFCF DSKPETNKYGASPKYID >gi|281305849|gb|ADEF01000019.1| GENE 5 4941 - 6929 1802 662 aa, chain - ## HITS:1 COG:BS_nagB KEGG:ns NR:ns ## COG: BS_nagB COG0363 # Protein_GI_number: 16080555 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Bacillus subtilis # 46 280 10 239 242 166 39.0 1e-40 MKLNLSSEIVLNKVPVELYRPATAIDRSELTRYEKIDTDIFPKIEEGASHIADEIVKTVK EKQAEGKFCVLGLGTGLSLTPIYNELIHRHQTDKVSFHNVIVFNAYEYFPITADTQNSCM KQLGDRFLNHVDIDPKNVFSLDGSISQEDVQSHCRLFEERMQTFGGIDIMLLGIGRSGNI ATNEPGSTLTSTSRIILVDEVSRKEMALSFGNNESVPPCSITMGIATILKAKKIFLVAWG EEKAEIIQKTVEEKITDTIPASFLQTHNNVHVVIDLSAASRLTRIVHPWLVKSCEWTDKL VRSALVWLCQLTKKPILKLTNKDYNDHGLSELLALYGSAYNANIKIFNDLQHTITGWPGG KPNADDTYRPERAKPFPKRVIVFSPHPDDDVISMGGTLRRLVQQGHDVHVAYETSGNIAV GDEEVTRFMHFINGFNQLFGSEKDEVIKNKYKEIKEFLSKKKEGDIDTLDVRTIKGLIRR GEARTANTYNGVPLDHVHFLDLPFYESGKIEKLPMTEKDVQIVRDLITQVKPHQIYVAGD LADPHGTHRKCTDAVLAALDLEKEAGAEWLKDCRVWMYRGAWAEWEIENIEMCVPMSPEE LRAKRNSILKHQSQMESAPFLGNDERLFWQRSEDRNHATAALYDSLGLACYEAMEAFVEY KV >gi|281305849|gb|ADEF01000019.1| GENE 6 6989 - 7780 863 263 aa, chain - ## HITS:1 COG:STM0684 KEGG:ns NR:ns ## COG: STM0684 COG0363 # Protein_GI_number: 16764054 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Salmonella typhimurium LT2 # 1 263 1 263 266 375 66.0 1e-104 MRLIIEENYEALSNWAAEHVIERIRAFNPTAERPFVLGLPTGSSPEGMYARLVKANKEGR VSFKHVITFNMDEYVGLPESHPESYHSFMARNLFDHIDCPKENIHILNGNAKDLEAECKA YEEKIAAVGGIDLFIGGIGPDGHIAFNEPCSSLTSRTRIKTLTSDTIIANSRFFDNDINK VPKHALTVGVGTVMDAKEVMILCNGHHKARALQAVVEGPVTHYWTISVLQQHPHGIIVCD EPATDELRVGTYRYFKDIEKNNI >gi|281305849|gb|ADEF01000019.1| GENE 7 7804 - 9411 1458 535 aa, chain - ## HITS:1 COG:CC0447 KEGG:ns NR:ns ## COG: CC0447 COG3525 # Protein_GI_number: 16124702 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Caulobacter vibrioides # 30 513 31 507 757 369 40.0 1e-102 MKTKMITLLLVCGMMSFFSASAQNVADYQIVPMPKELSLTTKKPFVLSASTCIYSPAGDM DLQRNAQYLSEYIRETTGLQLNCVTKKTKQAISLAIDSKIKNDEGYVLSVTPQGVTVAGK TARGVFYGLQTLRKSLPVANNLTEVMLPAVVIKDAPRFGYRGGMLDCGRHFFSIDFVKKF IDLLALHNMNVFHWHLTEDQGWRIEIKKYPELTKIGSIRKETVVGRNSGVCDGVPYGGYY TQEQAREIVKYAADRYITVIPEIDMPGHMLAAMAAYPELGCTGGPYEVAKKWGVFEDVLC LGNEKTYQFCEDVLAELMDIFPSKYINIGGDEAPHVRWEKCPKCQRVMQAQGLTAKKLQG YFTNRIEKFINSKGRRLIGWDEILDGDINQSATVMSWRGVEPGVKAAMAGHDVVMSPTTY AYFDYYQTDKTFNEPLLIGGNLPIEKTYSYEPLPNDLPDEARQHIIGVQCNLWTEYIPYP NLAEYQLLPRMAAIAEIQWSEHKKDFPEFKNRLTRLTKFYDLYNYEYAKHLWNKK >gi|281305849|gb|ADEF01000019.1| GENE 8 10071 - 11318 1132 415 aa, chain + ## HITS:1 COG:XF0088 KEGG:ns NR:ns ## COG: XF0088 COG2262 # Protein_GI_number: 15836693 # Func_class: R General function prediction only # Function: GTPases # Organism: Xylella fastidiosa 9a5c # 10 402 7 371 450 268 41.0 1e-71 MKEFVISEAKSETAVLVGIVTQEQNEAKTNEYLDELEFLADTAGAETVKRFTQKAGGPNA VTYVGKGKLEEIKQYIDEEAENERPVGMVIFDDELSAKQIRNIEKALDVKILDRTSLILD IFAMRAQTANAKTQVELAQYRYMLPRLQRLWTHLERQGGGSGSGGGKGSVGLRGPGETQL EMDRRIILQRITLLKQRLEQIDKQKTTQRKNRGRMIRVALVGYTNVGKSTLMNLLSKSEV FAENKLFATLDTTVRKVVVENLPFLLADTVGFIRKLPTDLVDSFKSTLDEVREADLLLHV VDISHPDFEEQIHVVENTLKELGCAEKPSMIIFNKIDNYTWVPKDADDLTPSTAENITLD ELKQTWMARLNDQCLFISAKKKLNIDEFKEVLYQQVRRLHVQKYPYNDFLYPIEE >gi|281305849|gb|ADEF01000019.1| GENE 9 11377 - 11793 64 138 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIVPYCFHPYFLSPFVLYERKLLVIVCREQSPKQCSLWNFVLSPCKIFSTFISLFVFLFF ILFRDIALFVELLYILQCVTCYMFFFTSFSFSSFSDCFYSYDADRRSSRNLAQGSALGRE LQGTDALKEQGEALVTYL >gi|281305849|gb|ADEF01000019.1| GENE 10 11781 - 12239 189 152 aa, chain + ## HITS:1 COG:no KEGG:Fjoh_2186 NR:ns ## KEGG: Fjoh_2186 # Name: not_defined # Def: transposase IS200-family protein # Organism: F.johnsoniae # Pathway: not_defined # 1 152 1 151 153 106 36.0 3e-22 MAQSLCKIYIHLIFHIKSDSPCIRENDLSRIHEYLAKLVDLATNCKVLSVGGISNHIHIL FTLSNIESVAHVVEEMKRKSSKWIKTIDAHYQKFSWQHGYAAFSVSQSQIDKTIHYIKNQ HQHHQKLSFADEYKHFLEAYQIQYDQQYIFSD >gi|281305849|gb|ADEF01000019.1| GENE 11 12526 - 14382 1850 618 aa, chain + ## HITS:1 COG:no KEGG:PRU_0114 NR:ns ## KEGG: PRU_0114 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 617 1 616 617 904 67.0 0 MKEYRELTEEEIRILEERSCWAEEWANIHVAEGFKPNYMHRVMLYGEVYIGAFDDTIEVS RDFFKHSGINNATLRNVTIGDNSLVENIGNYINNYTIGDRCYISNVCTLETSEGATYGEG NLVSVLNEVGDGNVVLFRDLNSQLAAFMVKHFHDKPLKEAIRRLIKEEINLHAPEQGWIG NNVKIVNTKEISNTVIFDECEINGASRLSDCTILSSDNASVYIGTGVICENSIISYGSSI INSVKMQDCFVGEACQISNGFTASASVFFANSYMSNGEACAAFCGPFTASHHKSSLLIGG MFSFYNAGSATNFSNHAYKMGPMHYGTLQRGCKTASGAYLLMPANIGTFSVCFGKLMYHP DTSCLPFSYLKAYSDIMYLSPGRNITTVGLYRDIRKWPKRDLRPQGTLKSIVNFDWLSPY SVGEIIEGKKILEKLQDASGNEVALYNYYNYVIKSNSLQKGIENYDMALRIYMGAVLKRM RKRDANLTPPSSTVGTGQWTDLSGLLLPVSEEERLIEDIKNGNLESIQDVLQRFEDINEH YRDYQWAWTYQLILDYYHLNTITPQDADRIREDYIQARRTWIAAIRKDAEKEFAMGDVEQ NVLDDFLDKLDHEVDYEE >gi|281305849|gb|ADEF01000019.1| GENE 12 14557 - 17463 2496 968 aa, chain + ## HITS:1 COG:sll0915 KEGG:ns NR:ns ## COG: sll0915 COG0612 # Protein_GI_number: 16330991 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Synechocystis # 39 479 62 507 524 158 25.0 4e-38 MKIAKFTLSLALLLITSIASAKSYNYKTVAGDPMKARIYTLDNGLKVYLSVNKEKPRIQT YIAVKTGSKNDPAETTGLAHYLEHLMFKGTKQFGTTNAEKEAPYLQEITERYEQYRLLTD PTERKKAYHEIDSVSQLAAAYNIPNEYDKLMASIGSEGSNAFTSNDITCYVENIPANEVE NWARIQADRFQNMVVRGFHTELEAVYEEYNIGLANDGEKEWNALNAKLFPTHPYGTQTTI GTQGHLKNPSIVNIQNYFKRYYVPNNIAICMAGDLNPDEVMTVLERYFGTWKKSETLSYP TFAPQPTLQASVDTTVVGLEAENVLMAWKFDGAASLQNDTLTLVDKILSNGHAGLLDLNL NQSMQVLESGTFINPLADYSSFCIIGMPKEGQTLDEVKHLLLSEVDKLKQGAFADDLLLS ILNNYKREYYQSLQSNRSRVSMFTDAFINGQKWEDVVNKFNRLTKISKQDVIAFANRHFN DNFVCVYKKQGEDTTQKKIDKPQITPIPSNRNESSAFLNNIRNTHTTPIQPQFLDFKRDL TFTKTKKKLPIVYKHNSEDGLFNLALTWDFGTTANKEYDVACNYIDYLGTSKKSAKDFKR ELYKLACSLNISANPRNITVNLSGLDENMPKALQLLNELMTDAQPDTAAYKQYVALVLKA RQDNKQDQKKNFNALINYVKFGPYNVVRNSVSEKELKALQPQHLVDLFQALRKYEHTALY YGPTSVQQLSNDLDKLYHHAKKKWATPQNKEYQERTTPQNQVFIAPYKAKNIYMLMYHNE NKPFDEKQLAVGALFNEYFGGGMNTVVFQELREARGLAYSASAYYNNSPLKGHPEYAQTY IISQNDKMMDCIKVFNNILDTIPQSQAAFEIAKQGLTKQLASRRITRSGVLEAYHSAKEK GIDYDVAEKIYHALPAITLQDIVDFEVKHMAHKPYHYIILGDEKNLNINALQKIGNIKHL TTEEIFGY >gi|281305849|gb|ADEF01000019.1| GENE 13 17524 - 19173 460 549 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169634422|ref|YP_001708158.1| fumarate hydratase [Acinetobacter baumannii SDF] # 77 533 38 482 508 181 30 4e-45 MAKTPDFKYAPMFQMGKDDTEYYLLTNDGVSVGEFEGKPMLKVTPEALTMLTQQAIHNVS FMLRRTHNEQVAKILTDPEASDNDKYVALSFLRNAEVASKGKLPFCQDTGTAIVHGEKGQ QVWTGFCDEEAISRGVYNTYTQDNLRYSQNAPLNMYNEVNTRCNLPAQIDLEATEGMEYK FLFVTKGGGSANKTYLYQMTKAIIQNPGTLVPFLVEKMKSLGTAACPPYHIAFVIGGTSA EKNLLTVKLASTHYYDNLPTSGDETGRAFRDVALEKELLDEAHKIGLGAQFGGKYMAHDI RVVRLPRHGASCPIGMGVSCSADRNIKAKINKEGLWIEKLDENPGSLIPEELRQAGEGDV VKINLDQPMADICKELSKYPVSTRVSLNGTIIVARDIAHAKLKARLDAGEELPEYFKNHP ILYAGPAKTPEGMPCGSMGPTTANRMDPYVDEFQDHGGSMVMIAKGNRTQVVTDACQKHG GFYLGSIGGPAAVLSMNSIKSIECVEYPELGMEAIWKIDVVDFPAFILVDDKGNDFFKQL KPWTPCCNK >gi|281305849|gb|ADEF01000019.1| GENE 14 20345 - 21763 1152 472 aa, chain + ## HITS:1 COG:BH0687 KEGG:ns NR:ns ## COG: BH0687 COG2265 # Protein_GI_number: 15613250 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Bacillus halodurans # 1 470 1 455 458 279 35.0 1e-74 MSRKKKPLPILEGVTITDVAAEGKSLTRVDDMVVFVPFAVPGDVVDLQVRKKKHHYCEAE VVRFIKYSERRAEPVCQHFGICGGCKWQNLPYEDQLKAKQKQVHDQLTRIGKVDLPDFRP ILGSEKIYEYRNKLEFSCSNKRWLTKEEVSSGVQLDHKNAIGFHITGAFDKIYPIEKCWL MDDLCNQIRNEIRNYALNNGISFFDVKEQTGLLRDIMIRNSSTGEWMVLVQFKFQEQGDE QRAHDLLQHIGDRFPQITSLLYVNNQKCNDTFSDQTIEVFKGKDHITEMMDKLQFKVAAK SFYQTNTQQAFHLYEVARQLAQLTGKELVYDLYTGTGTIANFVARHAQQVIGIEYVEDAI ADAKANSKCNGIENTLFYAGDMKDILTDEFVKQHGKPDVIITDPPRAGMHPDVIQTILRA APKRIVYVSCNPATQARDLEVLNEQYRVEEVQPVDMFPHTPHVENVVLLEQR >gi|281305849|gb|ADEF01000019.1| GENE 15 21790 - 22821 950 343 aa, chain + ## HITS:1 COG:YPO2161 KEGG:ns NR:ns ## COG: YPO2161 COG0252 # Protein_GI_number: 16122393 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Yersinia pestis # 1 342 1 335 338 287 46.0 3e-77 MRTNKVLLIYTGGTIGMGKNAQTGALEPLDFRHLVENVPEFDLLQTDVGIYQFDPPIDSS DMDPTMWAKLVNIISENYNKYDGFVILHGTDTMSYTASALSFMLENLTKPVILTGSQLPI GELRTDGKENLLSSIELASAHREDGTAMVPEVCIYFSGRLLRGNRSTKQNADGLDAFESF NFPHLCNAGVNFNFQEHHILKPDFSKPMVPHTELDSHVMVFSLFPGLEEEIFKPILQVPT LRGIIMRSYGSGNAPQRNGLTQLLHEASNRGIVVVNISQCISGYVEMTRYDTGYQLKNAG VISGYDSTVEAAITKLMYLQGKYDDPQIISQEMNRSIAGEITR >gi|281305849|gb|ADEF01000019.1| GENE 16 22885 - 23808 793 307 aa, chain + ## HITS:1 COG:lin1491 KEGG:ns NR:ns ## COG: lin1491 COG0568 # Protein_GI_number: 16800559 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Listeria innocua # 41 305 108 373 374 230 46.0 3e-60 MFSYTKTITFATTIKLVQAKMRQLKITKSITNRESAALDKYLQEIGREDLLSTEEEIELA QRIKKGDRKALDKLTKANLRFVVSVAKQYQNQGLSLPDLINEGNLGLIKAAEKFDETRGF KFISYAVWWIRQSILQAIAEQSRIVRLPLNQVGSVNKINQLQNKFEQEFERRPNSSEIAE RIDIPEDKVIDAMKANGKHVSVDAPFSDGDDNSLIDVLPDSDIPMADNELVMESLRKEIA DALHTLNERERNVIECFYGINQPEMTLEEIGDRYGLTRERVRQIREKALRKLRKNTKNKQ LKSYLGR >gi|281305849|gb|ADEF01000019.1| GENE 17 23979 - 24509 531 176 aa, chain + ## HITS:1 COG:no KEGG:PRU_1022 NR:ns ## KEGG: PRU_1022 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 28 128 18 122 127 68 40.0 1e-10 MNIRKLLPLFIAALFAMNSHADNRPMGAHIFGFATSFNDSTVYLTEIQYVDSAYIGKSNF LFSRENYSYQLQNYLKSKGIATPTCVTTFAKKQKNIEKKYLKMRKRYEKKGTYQIKFIPL QDFLYKGIAPQESDLNREKIAKQKAKAEMKEAKKAKKEAKRKRKEAARKAATQTTK >gi|281305849|gb|ADEF01000019.1| GENE 18 24606 - 25505 546 299 aa, chain + ## HITS:1 COG:no KEGG:BT_0059 NR:ns ## KEGG: BT_0059 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 25 292 23 289 313 164 34.0 5e-39 MKYQSYYYCIANHYLSINFECSQKNSPQLIPSYLPFQCPKPPADQPLLLELYVNDELKAA KKEEKELIRNFETGNGDTIVEKLKRGGYQYIIKNTNQRDCCLLQTDKQFYRFDCALNGHY NMRRYGINNAIMMAFAYAASKYNTLLIHASLVRQNGYGYAFTAKSGTGKSTQVSMWLRYL KGCDLMNDDNPAIRIIDDEVFIYGTPWSGKTPCYRNMKAKLGAITQIDRALTNSVERLSP INAFAILLPSCSGMRWDKDINNNVCNTVTRIIELAPIYTLHCLPNREAAEICNHAIARK >gi|281305849|gb|ADEF01000019.1| GENE 19 25550 - 26044 368 164 aa, chain + ## HITS:1 COG:no KEGG:BT_0074 NR:ns ## KEGG: BT_0074 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 13 158 16 163 163 91 36.0 1e-17 MQPSVQPKTSPTKLFLANSAFIPEVIKLIEDGHTVTIDLRGYSMRPFLEHERDKGLIAKP PRPWKVGDVVLAEVQKGTYVIHRIIKMNSAQVTLRGDGNIGVEHCTVDQLKGFLLGFYRK GRTQLDATNGLKFRIYSKIWMALYPIRRYLLAAYRIWVHYFGPL >gi|281305849|gb|ADEF01000019.1| GENE 20 26077 - 26343 332 88 aa, chain + ## HITS:1 COG:no KEGG:PRU_2121 NR:ns ## KEGG: PRU_2121 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 88 1 89 89 67 37.0 1e-10 MRTKPGFQLRNICGEQILTAEGKENIDFTHIVGMNDSAAYLWEKIQNREFTIDDLVGLLM EEYNVDASTARKDVEVLIQRWIEAGICE >gi|281305849|gb|ADEF01000019.1| GENE 21 26424 - 27023 522 199 aa, chain - ## HITS:1 COG:no KEGG:BT_1495 NR:ns ## KEGG: BT_1495 # Name: not_defined # Def: siderophore (surfactin) biosynthesis regulatory protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 13 197 1 198 201 94 33.0 2e-18 MAVLSIIPLAADVQLGIWKIEEPVTMLLQRFPHLEKTVESYHSIERKRQKLAVYALLYAM TGKQDVWISHDTNGKPLLENYQISISDTHGFAAIILSKSRIVAVDIEYMSDRVSRIVSRF LRSDESASKVEEQLIHWSAKETTFKFYSSQHLQYSEMRLHPFTATAHGRVEVDNLKAGTV LPVNYVVTSDYVLTYALEE >gi|281305849|gb|ADEF01000019.1| GENE 22 27027 - 28370 1024 447 aa, chain - ## HITS:1 COG:FN1486 KEGG:ns NR:ns ## COG: FN1486 COG1253 # Protein_GI_number: 19704818 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Fusobacterium nucleatum # 36 436 17 418 426 201 33.0 3e-51 MDFSFITQSFSDVYLQSPSVGVIFAAILAALLLLLSGFASGSEIAFFSLTPTDIAALDSE KNVRDKKIELLREDSQRTLATILITNNFVNVTIIMLCNYVFGSLVHFGPSAYWLQFLMIT VLLTFLLLLFGEIMPKVYSRQNPLKFCRRSVDGILIFRKLFWPIENVLLKSGMIAERMLQ KQNHILSVNDLEQALELTDKEDIKEEQSMLKGIIRFGDETAKEIMTPRQDMLTLDIKTKF AEVLQCIKENNYSRIPVYQENNDNIRGVLYIKDLLPHLGKPTTFRWQSLMRLPYYVPGTK KIDDLLREFQENKIHIAIVVDEFGGTSGLVTMEDILEEIVGEINDEYDEDEKPFTKLNEN TYVFEGKTLLSDFCKLLSLNDDEFEDVQGDADSLAGLLLEIKGDFLHLHEQVDYKNYTFE ILEIEERRISKIKVVIHREPVQNTEEN >gi|281305849|gb|ADEF01000019.1| GENE 23 28383 - 28802 377 139 aa, chain - ## HITS:1 COG:XF1644 KEGG:ns NR:ns ## COG: XF1644 COG0629 # Protein_GI_number: 15838245 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Xylella fastidiosa 9a5c # 1 130 5 136 151 102 37.0 3e-22 MNKVMLIGNVGKDPDVRYFEADQAVAQITLATTERGYTLQNGTQVPDHTDWHTIVFYRGL AKVVEKYVHKGDKLYVEGRIRYRSYDDQRGIKRYVTEILADNMEMLTPKNVASSQQNPSE TQTTETTSTAADDLSKVPF >gi|281305849|gb|ADEF01000019.1| GENE 24 28831 - 29385 354 184 aa, chain - ## HITS:1 COG:no KEGG:PRU_0882 NR:ns ## KEGG: PRU_0882 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 184 1 180 180 221 59.0 7e-57 MNLYIRYFDKEALVYNVEEALDFLRSISEIDVDAALESDIRDYVSSDVFYPKRYKVRPRV YFILIKTTAETMIDFKQKKALHPNNASQNVIDKRDLTTNVMTRLTKMQEGWYEGVLDFKR VVMIPATGKHEYRDTRFVARCKANSGQDCYNRVVDYLKERVDARSQFPSSKGKSFRFKYL GMWK Prediction of potential genes in microbial genomes Time: Sat May 28 06:44:10 2011 Seq name: gi|281305844|gb|ADEF01000020.1| Prevotella timonensis CRIS 5C-B1 contig00012, whole genome shotgun sequence Length of sequence - 2183 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 226 - 286 13.6 1 1 Op 1 . - CDS 353 - 574 446 ## PRU_0936 hypothetical protein 2 1 Op 2 . - CDS 635 - 1186 506 ## COG2096 Uncharacterized conserved protein 3 1 Op 3 . - CDS 1183 - 1281 70 ## 4 1 Op 4 . - CDS 1324 - 1935 141 ## BF4277 hypothetical protein - Prom 1955 - 2014 3.9 Predicted protein(s) >gi|281305844|gb|ADEF01000020.1| GENE 1 353 - 574 446 73 aa, chain - ## HITS:1 COG:no KEGG:PRU_0936 NR:ns ## KEGG: PRU_0936 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 73 1 73 73 111 95.0 8e-24 MYWTLELASKLEDAPWPATKEELIDYAIRSGAPLEVLENLQEIEDEGDVYDSIEDIWPDY PTKEDFLFNEDEY >gi|281305844|gb|ADEF01000020.1| GENE 2 635 - 1186 506 183 aa, chain - ## HITS:1 COG:AGl2467 KEGG:ns NR:ns ## COG: AGl2467 COG2096 # Protein_GI_number: 15891347 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 169 10 181 196 132 43.0 5e-31 MKIYTKTGDNGSTSLIGGSRVSKDDLSIETFGTLDELNAHLGLLRPMLLHQYDKAFVTHI QSLLFVIGSYLASDPAQPDKRQRYLLPAAEVQAIEKEIDKIEKQLPPQTAFVLPGGCRCA AQADVCRTVCRRAERRMISFHAHIPIQPEALQYMNRLSDYLYVLARKINFQAKVTEKKWE YPW >gi|281305844|gb|ADEF01000020.1| GENE 3 1183 - 1281 70 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSVLLFFVSFPWSLSKFDKTMMIPNLIHVTL >gi|281305844|gb|ADEF01000020.1| GENE 4 1324 - 1935 141 203 aa, chain - ## HITS:1 COG:no KEGG:BF4277 NR:ns ## KEGG: BF4277 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 11 203 5 209 209 81 29.0 1e-14 MDSYHTTSMSYRLRRQLAWLCRWPRALGFGIQSPWTYHFVTRVVYDRTDYKSYRVLQEAM PADSSASLRLARLLFRFARAETLTHWWIRTPHAALYGRYIQAGYPPSKLLTGELGDGESA SLVSDVYLVHLEEDWKYCFLRFIAQPRNGTFFIVEGISLNRHCQHIWKEMVARCRQFITF DLFDCGIILYDPTKTIGHYRLIF Prediction of potential genes in microbial genomes Time: Sat May 28 06:44:39 2011 Seq name: gi|281305787|gb|ADEF01000021.1| Prevotella timonensis CRIS 5C-B1 contig00056, whole genome shotgun sequence Length of sequence - 76006 bp Number of predicted genes - 56, with homology - 54 Number of transcription units - 33, operones - 13 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 37 - 96 5.3 1 1 Tu 1 . + CDS 144 - 740 740 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 2 2 Op 1 . - CDS 814 - 1470 632 ## COG0036 Pentose-5-phosphate-3-epimerase 3 2 Op 2 . - CDS 1485 - 1619 92 ## gi|282880288|ref|ZP_06289002.1| conserved hypothetical protein - Prom 1663 - 1722 6.8 + Prom 1768 - 1827 5.6 4 3 Op 1 . + CDS 1957 - 2667 579 ## COG0135 Phosphoribosylanthranilate isomerase 5 3 Op 2 . + CDS 2762 - 3376 408 ## BT_0462 putative transcriptional regulator 6 3 Op 3 . + CDS 3461 - 3973 493 ## COG0778 Nitroreductase 7 4 Tu 1 . + CDS 4103 - 5296 325 ## PROTEIN SUPPORTED gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 8 5 Op 1 . - CDS 5448 - 6650 1010 ## COG2942 N-acyl-D-glucosamine 2-epimerase 9 5 Op 2 4/0.000 - CDS 6675 - 7592 861 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase - Prom 7614 - 7673 2.6 10 5 Op 3 . - CDS 7683 - 8921 1012 ## COG0477 Permeases of the major facilitator superfamily 11 5 Op 4 . - CDS 8962 - 10011 589 ## COG3055 Uncharacterized protein conserved in bacteria - Prom 10057 - 10116 9.6 + Prom 10009 - 10068 10.3 12 6 Op 1 6/0.000 + CDS 10278 - 10823 320 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 13 6 Op 2 . + CDS 10871 - 11872 792 ## COG3712 Fe2+-dicitrate sensor, membrane component + Term 11963 - 12008 6.5 + Prom 12240 - 12299 6.9 14 7 Op 1 . + CDS 12457 - 15930 2699 ## BF0681 putative outer membrane protein 15 7 Op 2 . + CDS 15932 - 17806 1737 ## BF0751 hypothetical protein + Prom 17921 - 17980 6.1 16 8 Tu 1 . + CDS 18024 - 22286 3408 ## COG4724 Endo-beta-N-acetylglucosaminidase D + Term 22319 - 22385 13.3 17 9 Tu 1 . - CDS 23230 - 24243 877 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Prom 24278 - 24337 5.0 + Prom 24200 - 24259 4.4 18 10 Tu 1 . + CDS 24380 - 25153 798 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 - Term 24981 - 25023 0.2 19 11 Op 1 . - CDS 25150 - 26016 373 ## PROTEIN SUPPORTED gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 20 11 Op 2 . - CDS 26021 - 27085 653 ## PRU_0159 hypothetical protein 21 11 Op 3 . - CDS 27082 - 32607 3649 ## COG2373 Large extracellular alpha-helical protein - Prom 32658 - 32717 4.6 + Prom 33229 - 33288 4.9 22 12 Tu 1 . + CDS 33536 - 36127 1823 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 36154 - 36183 0.4 - Term 36185 - 36216 0.0 23 13 Tu 1 . - CDS 36257 - 38395 1052 ## COG4412 Uncharacterized protein conserved in bacteria + Prom 38461 - 38520 6.9 24 14 Tu 1 . + CDS 38614 - 40608 1744 ## COG1297 Predicted membrane protein - TRNA 40874 - 40950 77.0 # Pro TGG 0 0 - Term 41166 - 41222 0.5 25 15 Tu 1 . - CDS 41241 - 42428 1137 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes - Prom 42471 - 42530 4.9 + Prom 42473 - 42532 9.2 26 16 Tu 1 . + CDS 42641 - 43666 859 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Term 43573 - 43615 0.1 27 17 Tu 1 . - CDS 43764 - 44465 475 ## COG4123 Predicted O-methyltransferase + Prom 44299 - 44358 1.5 28 18 Tu 1 . + CDS 44486 - 44668 74 ## 29 19 Op 1 . + CDS 45375 - 47864 2498 ## COG0466 ATP-dependent Lon protease, bacterial type 30 19 Op 2 1/0.000 + CDS 47876 - 49003 875 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 31 19 Op 3 . + CDS 49065 - 50240 716 ## COG0795 Predicted permeases + Prom 50245 - 50304 5.0 32 20 Tu 1 . + CDS 50370 - 52121 1318 ## COG0513 Superfamily II DNA and RNA helicases + Term 52128 - 52156 -0.1 - Term 52207 - 52246 0.2 33 21 Tu 1 . - CDS 52316 - 53143 561 ## COG4099 Predicted peptidase - Prom 53180 - 53239 7.3 34 22 Tu 1 . - CDS 53973 - 55127 879 ## COG2706 3-carboxymuconate cyclase - Prom 55237 - 55296 5.1 + Prom 55121 - 55180 6.3 35 23 Op 1 . + CDS 55234 - 56667 775 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 36 23 Op 2 . + CDS 56657 - 57001 135 ## gi|282878930|ref|ZP_06287694.1| hypothetical protein HMPREF0650_0600 37 24 Tu 1 . - CDS 56976 - 58136 781 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - Prom 58266 - 58325 7.3 + Prom 58110 - 58169 2.6 38 25 Tu 1 . + CDS 58268 - 60430 1870 ## COG0480 Translation elongation factors (GTPases) + Term 60445 - 60498 9.1 + Prom 60597 - 60656 6.9 39 26 Op 1 40/0.000 + CDS 60748 - 62217 1193 ## COG0642 Signal transduction histidine kinase 40 26 Op 2 . + CDS 62245 - 62943 720 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain + Term 62984 - 63034 10.2 - Term 63100 - 63154 0.1 41 27 Tu 1 . - CDS 63307 - 63504 112 ## gi|282880327|ref|ZP_06289041.1| hypothetical protein HMPREF9019_1686 - Prom 63558 - 63617 6.4 42 28 Op 1 11/0.000 + CDS 63603 - 63947 410 ## PROTEIN SUPPORTED gi|160885185|ref|ZP_02066188.1| hypothetical protein BACOVA_03183 43 28 Op 2 27/0.000 + CDS 63950 - 64219 421 ## PROTEIN SUPPORTED gi|150010521|ref|YP_001305264.1| 30S ribosomal protein S18 44 28 Op 3 . + CDS 64238 - 64816 478 ## PROTEIN SUPPORTED gi|34540405|ref|NP_904884.1| 50S ribosomal protein L9 + Term 64908 - 64950 6.1 - Term 65075 - 65123 14.1 45 29 Op 1 . - CDS 65153 - 65590 429 ## PRU_1780 hypothetical protein 46 29 Op 2 . - CDS 65668 - 68166 1692 ## COG0489 ATPases involved in chromosome partitioning 47 29 Op 3 . - CDS 68227 - 69108 684 ## COG1209 dTDP-glucose pyrophosphorylase 48 30 Tu 1 . + CDS 69011 - 69190 126 ## + Prom 69260 - 69319 6.4 49 31 Tu 1 . + CDS 69409 - 70038 624 ## PRU_0228 hypothetical protein + Prom 70097 - 70156 5.3 50 32 Op 1 . + CDS 70176 - 70469 281 ## PRU_0227 hypothetical protein 51 32 Op 2 . + CDS 70442 - 70789 188 ## PRU_0226 hypothetical protein + Prom 70872 - 70931 3.1 52 32 Op 3 . + CDS 70956 - 72488 1565 ## COG1418 Predicted HD superfamily hydrolase + Term 72508 - 72574 18.4 - Term 72568 - 72614 3.1 53 33 Op 1 . - CDS 72637 - 74202 1229 ## COG4108 Peptide chain release factor RF-3 - Prom 74231 - 74290 2.4 54 33 Op 2 . - CDS 74293 - 75141 929 ## COG1091 dTDP-4-dehydrorhamnose reductase 55 33 Op 3 . - CDS 75145 - 75693 443 ## PRU_0239 hypothetical protein 56 33 Op 4 . - CDS 75787 - 75987 172 ## gi|261879273|ref|ZP_06005700.1| conserved hypothetical protein Predicted protein(s) >gi|281305787|gb|ADEF01000021.1| GENE 1 144 - 740 740 198 aa, chain + ## HITS:1 COG:PA2896 KEGG:ns NR:ns ## COG: PA2896 COG1595 # Protein_GI_number: 15598092 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Pseudomonas aeruginosa # 8 190 13 190 194 78 27.0 9e-15 MRNLTELSDEELAMAYINGQYAAFDLLLSRNQSKIFSYILFVVRDRSMADDVFQDTFVKV ITKLQQGKYTTSGKFSAWVMRIAHNVIMDIYRDQKSEKIVEATEDNDLSNFGDQALLEQA IEAKFVNDQVLQDVKKMMNLLPTTQREVVYMRFYQQLSFKEIAETTNVSINTALGRMRYA LINLRKMAQEHDLMLQLL >gi|281305787|gb|ADEF01000021.1| GENE 2 814 - 1470 632 218 aa, chain - ## HITS:1 COG:lin2808 KEGG:ns NR:ns ## COG: lin2808 COG0036 # Protein_GI_number: 16801869 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Listeria innocua # 4 217 1 214 214 225 52.0 4e-59 MKKLTLVSPSLLSADFTNLQADIDMINQSDADWLHLDVMDGVFVPNISFGFPVIHAVSKI CQKPLDVHFMIVQPERYIQQAAEAGATLMSVQYEACTHLHRTIQQIHDAGMKAGVVLNPA TPVHLLEDIITDVDLVLLMSVNPGFGGQAFIENTIAKVKRLRKLIDESGAQALIEVDGGV QEDTAPRLVQAGADVLVSGSYVFKAKDPIATIHWLKQC >gi|281305787|gb|ADEF01000021.1| GENE 3 1485 - 1619 92 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880288|ref|ZP_06289002.1| ## NR: gi|282880288|ref|ZP_06289002.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 4 44 1 41 41 70 100.0 5e-11 MKPMPYFTPEELNPSEATLRLLKQLARTYRVAKTQHHHIAYCLN >gi|281305787|gb|ADEF01000021.1| GENE 4 1957 - 2667 579 236 aa, chain + ## HITS:1 COG:all5288 KEGG:ns NR:ns ## COG: all5288 COG0135 # Protein_GI_number: 17232780 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylanthranilate isomerase # Organism: Nostoc sp. PCC 7120 # 3 233 1 207 217 84 26.0 2e-16 MAMKIKVCGMRDTDNIRAVAKLDIDMMGFVFIPDSPRYVQMISSHAGIIPDYSEQKLAEG MQTNRSDEVCHRIKRVGVFADDMPQNIVTRVYNYDLDDVQLNGSESSVMIDNLLRTICPD IRPTLQIIKKIEINGPEDLEVCEAYKEVVDLFLFDIKRETSEQATLERINTILSTYNGSI PFLLSGGMGFFSASLLQSLHHPQLQGIQVNEEFETQPGVKDVEKLRHFVEQVKKNS >gi|281305787|gb|ADEF01000021.1| GENE 5 2762 - 3376 408 204 aa, chain + ## HITS:1 COG:no KEGG:BT_0462 NR:ns ## KEGG: BT_0462 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 33 198 16 180 184 108 33.0 1e-22 MDNLQQHHDPHLLPSSTNDEDIIQKPLDDDLPWYALRLFTLKTQQVIDYLEEHHLDYFIP MEYVDVEDRKHRVQQKLRPVVRNLIFIKRTMSELSIRKILTEAPFKGSVIRKSREDSQYY EIPSRQMFEFQAMCNPEIVMRQYLSEAQAKLKVGTPVYVKYGPLKGLSGRLVRSNKKYFL LKEIPGLGVMLKVSRWCCRPMVEE >gi|281305787|gb|ADEF01000021.1| GENE 6 3461 - 3973 493 170 aa, chain + ## HITS:1 COG:CAC1484 KEGG:ns NR:ns ## COG: CAC1484 COG0778 # Protein_GI_number: 15894763 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Clostridium acetobutylicum # 3 170 2 167 172 101 31.0 8e-22 MTDFLSLCNDRYAVRKFTDKMVSEEDIAYLKEAIRLAPSAANRQPWKFIFVVSQEAKEKL RQCYHREWFKTAPMYVIAMKNEQACWVREEDGKQHADIDVAIATEHLCLAAADRGLGTCW VCHYDIELVKKYFPVKDFEAVALIPVGYIDTSVKQPEKVRKSAEEIFQKI >gi|281305787|gb|ADEF01000021.1| GENE 7 4103 - 5296 325 397 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762640|ref|ZP_02169704.1| ribosomal protein L33 [Bacillus selenitireducens MLS10] # 85 394 5 317 323 129 30 4e-29 MKSLFENKKSSKNNQVKNQIIEYFIVNGNATNADLAKEFNLSVPTIVKIVNEMCDEGFVI EYGKLETEEGRHPNLYGLSPESGYFIGVDINATCVHIGLMNFRGDLIDLLTDNSYKHENT PAALEQLCSIISNYTDKLSVPKEKIFDINVNISGRVNPDTGYSYSIFNFSEAPLADFLSH RLGFKVTIENDTRAMTYGEYLKGCAHGEKNVLYINVSWGLALGMIIEGNLYKGKSGYAGE FGHNFFVNNEIICHCGKKGCLETEVSGLAFVRIVKERVSNGESSNIQQDDKGNFSMEALI EATCNDDTLCIEVVESMGRKLGQSIAGLINIFNPELVVIGGTLSATGDYLMHAIKSSVLK YSLNLMNRDTKLVLSKLKDRAGVIGACLIARKRILEL >gi|281305787|gb|ADEF01000021.1| GENE 8 5448 - 6650 1010 400 aa, chain - ## HITS:1 COG:slr1975 KEGG:ns NR:ns ## COG: slr1975 COG2942 # Protein_GI_number: 16330802 # Func_class: G Carbohydrate transport and metabolism # Function: N-acyl-D-glucosamine 2-epimerase # Organism: Synechocystis # 12 392 11 387 391 258 35.0 1e-68 MEIKNYISQWEERYHSDLTNNILPFWLTNGLDKEHGGVYTCLDRDGKLMDTTKSVWFQGR FGFITAYAYNHIEKNPAWLEASKSCIDFIIHHCTNEDGRMYFEVTADGTPLRMRRYLFSE CFAAIAMSEYSIASGKQEYAEKALEVFHTIQHYANTPGLLEPKYLPAMKCQGHSLTMILI NTASRLREAIDAPELTKQIDLSLEKLEKYFVHPEYKAILETVGLNGELIDTLNGRVINPG HCIETSWFILEEARYRNWDSHLVDLGTKILDWSWDWGWDEKYGGIINFRDCKNFPPQDYS QDMKFWWPQTETIIATLYAYLATGDEKYIEKHKMISEWTYRHFPDKEYGEWYGYLHRDGT VAQPAKGNIFKGPFHIPRMMMKSYLLCKDIMEKENESKSR >gi|281305787|gb|ADEF01000021.1| GENE 9 6675 - 7592 861 305 aa, chain - ## HITS:1 COG:VC1776 KEGG:ns NR:ns ## COG: VC1776 COG0329 # Protein_GI_number: 15641779 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Vibrio cholerae # 1 299 1 296 298 179 32.0 5e-45 MEKIIGLIDAPFTPFHENGDLNLEPIEKYAAMLQKNGLQGVFINGSSGEGYMLTTEERMQ LAERWLKVAPQGFKVIVHVGSCCLRESQKLAAHAQEIGAWGIGSMAPPFPKIGRIEELVK YCEAIANSAPALPFYYYHIPAFNGAFLPMLELLKAVDGRISNFAGIKYTFESLYEYNQCR LYKNGKYDMLHGQDETILPSLAQGGAQGGIGGTTNYNGRELVGIIEAWKNGDIETAREKQ NFSQEVINVICRYRGNIVGGKRIMKLLSFDLGPNRVPFQNMTNEEEQQMKKELEAINFFD RCNQF >gi|281305787|gb|ADEF01000021.1| GENE 10 7683 - 8921 1012 412 aa, chain - ## HITS:1 COG:CC2486 KEGG:ns NR:ns ## COG: CC2486 COG0477 # Protein_GI_number: 16126725 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Caulobacter vibrioides # 9 370 40 421 519 112 25.0 2e-24 MNLKEKKYYPWLVVALLWVVALLNYMDRQMLSTMQESMKVDIVELNKAEAFGALMAVFLW IYGLVSPFAGMIADRVSRKWLVVGSLFVWSGVTYLMGYAENFTQLYWLRAFMGISEALYI PSALSLIADWHEGKSRSLAIGIHMTGLYTGQAIGGFGATIAAMFTWHSAFHWFGIIGVVY SIVLFLFLHENPSHAQSTSAATHSKASINPFKGLSIVLSNWAFWIILFYFAVPSLPGWAT KNWLPTLFATNLGIDMSSAGPLSTITIAVSSFVGVIVGGILSDRWVQRNIRGRIYTSAIG LGMTIPALILLGFGHHIVAIVGAGLCFGVGYGIFDANNMPILCQFISTKHRGTAYGIMNM VGVFAGALVTQVLGKWSDGGNLGLGFAILGGIVVIALILQLACLKPATDNAS >gi|281305787|gb|ADEF01000021.1| GENE 11 8962 - 10011 589 349 aa, chain - ## HITS:1 COG:FN1470 KEGG:ns NR:ns ## COG: FN1470 COG3055 # Protein_GI_number: 19704802 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Fusobacterium nucleatum # 28 344 32 366 372 85 25.0 1e-16 MACIYHHDASAKGIGHLQMERIKGFPVSEKGIEKGVSACFAGIVDGYLIMAGGCNFPDVP AADGGKKKFYQGIYAAKISTTADTLDWQLIGKLPEPCAYGVSVSLPNGLLCMGGCNAEGS FNQVFKITIEQGKAVVEAYPALPWKLDNFAGSLGCSTVMVYDGLHIAQLQLEDLQKGWQI LSPLTSEVLGQPVCGYTDGAFYAWGGCTSKTDKQDAQLQMQGYQFTKSGAKPVKGPRTCQ QEEIYLGGAAAVNCGDAGIVVLGGVNKDVFEAAVNRPMPGYLKHPIAWYQFNPYISLYKN GKWALLGSHEVAARAGASLVFDGTHIYIIGGELKPGIRTAEIYRFRLPL >gi|281305787|gb|ADEF01000021.1| GENE 12 10278 - 10823 320 181 aa, chain + ## HITS:1 COG:SMb20592 KEGG:ns NR:ns ## COG: SMb20592 COG1595 # Protein_GI_number: 16265252 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Sinorhizobium meliloti # 9 172 22 187 227 62 23.0 5e-10 MQRNISIVYDALFRQMYAKLFFYAKGLVGSEDDAQDVVEDVFTDLWQRRDDIEFGDQISS FLYRAVYTRSINLLKRRKISSGYIQQLEDINSKLLETLQSNLKTPVHTLENNELGNMLND AIDELPIRCREVFRMSYLQGLHNNDIAELTGTSVRTVEAHMYRALKYLRQKLSNISNFYS D >gi|281305787|gb|ADEF01000021.1| GENE 13 10871 - 11872 792 333 aa, chain + ## HITS:1 COG:PA2388 KEGG:ns NR:ns ## COG: PA2388 COG3712 # Protein_GI_number: 15597584 # Func_class: P Inorganic ion transport and metabolism; T Signal transduction mechanisms # Function: Fe2+-dicitrate sensor, membrane component # Organism: Pseudomonas aeruginosa # 18 333 29 328 331 83 27.0 5e-16 MSELNENIIIHFITRQCSEDELKQINEWMAEDKRHVQYLLQMEQIYQHLQSRSMPQWKVE DALERVHSNAGATMPHQAYHPFWEKWRRYAAAIVLAILAGTALLWYSKAQQTEDGQAYIV AQTNGSTTKQVLLPDGSKVWLNHHSSLSYPKHFEGDVRKVLLTGEGYFEVSKDSTRPFIV ENDAMAVKVLGTVFDFKNDATNMCSEVSLLEGSVEVKSNLSAGQMVLVPGQKAQLDYHTG HMTVSNIEDGIDAVWHTNLIPFSNATIIEIVSKLEKIYGVRMEIGANVDLRSTYSGKIKR KQDIDSVLHLLQNTLPITFKKTSDGSYSVNTVY >gi|281305787|gb|ADEF01000021.1| GENE 14 12457 - 15930 2699 1157 aa, chain + ## HITS:1 COG:no KEGG:BF0681 NR:ns ## KEGG: BF0681 # Name: not_defined # Def: putative outer membrane protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 2 1157 1 1138 1138 1268 58.0 0 MMKNKKPFRGRIWSGMAVGLLLSALPFYDSFAQVTIKMPNTTLGTAIKKIQAQKKYQFFY DDNLSRLPVNALNVKDASIETVLHQLLNGKNVAYTIEDNVVYLKKQSPQQPKKSSNKEKN KISGRVLDENNEPLIGVTITQKGTNNRAVTDFDGNYTIVTDDNDAVLQFSYLGYKTKELT AGTSHSVNTVMSVDAKAIDEVVVTALGIKREKKMLGYAVQDIKSDVLNTTGDPSVTGALE GKVAGLQMNTSSTGLAGSTKITIRGNSSLTDNNQPLWIVDGVPFTDDQTSEASAYGGYDR GGTSLDINPEDIESISVLKGPNAAALYGSRAGNGVILVTTKKGSRKDGFGVVYNGSFTWS QVSQTIDMQKRYGQGSQGKPVYGTNEQEQRMLAGELAFGSVLDGHNEPSWLGTPIPYRYD GDKLKDYFRTGFSHFHTVALGNATEKSHYRLSIGFNGNNGLFQNETLQKLNVDLNTGTVV NKYLSLDGKISLSRMKAENRPMTGLGGEVAQLLLIPGNVRLSDLQHYTTETRLHQNWFGP NQQYSNPYYVRHQYQNSDERWRAFGYYAANLNLADWLKFSAKYAFDYYRTRLQSSNLSLA DQAISSKTQHWSEKVTTDGMQRGEENHFEHNISFMLLGDRQLAETFRLGYNLGSNIMYLQ HEVLNAGVENMLSKDNWIFNTGARLNSANNNGYQRAMYSAFGSLQLSYNEYLSLDLTARN DWSSTLPVKHNSFFYPSASLSYVFSDFMRSIKQPLPTWITFAKMRLSAAQVGKDPLPYSL YNVRKFAFRNGVREPIAQTIKMNSNLKPEIKSSIEAGLDMKFFQNRLGFDFTYYWSSTKN QAMLVDASSPWSQQWVNAGKIVNKGVELMVYATPVKTSDFVFDLNVNLAHNKSTVESLAD GVNRIYFAGDPNMPVKVGAVVGGRLGDIYANNMIKRDGQGRVVVDKNGLPQPETGNGNME EYLLQHPIGNIQPDLLMSVTPSFNFKGILLSAMFDMKFGGSIVSVSEGMATSVGTSARTE YRGEYKELNGKSDYYMVVPGVKEDGSENDIPVSAQSYYSTVGLFKSQKGYAEEFVHDASY IKLKELAIGYQLPKTLLKHTPLTQCKLSFVARNLCFLMKHTPGNPDGGYDTTMFSQALDF MAVPYTRTFGFSVNLGF >gi|281305787|gb|ADEF01000021.1| GENE 15 15932 - 17806 1737 624 aa, chain + ## HITS:1 COG:no KEGG:BF0751 NR:ns ## KEGG: BF0751 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 16 619 9 577 577 461 44.0 1e-128 MKGLNYMNNKFSNIHLLLLALTLGVTTSCYDLEDMGHNPYEIEDKTSEAGTDTVTEETTG KYADLNLNFKISKDDSVTCKTDLAGAASTFRNFLYEGYYNDYQITTNLSHDIYAGYVANN QPKHAKKSPDFGYADGWSGRRWAHFYNDRSSEYRTLLRAFKFNDTPDRYKNMFYITRIYY AFLALANTDTYGDMPFKTYVQARIPETNNVPYNTQAEVYDAMFRMLEQAVDSIKPDDNSQ YKVDKDDICYFGDVNKWLRFANTLRLRMALRISNIDPDRAKKEGEAALNNKYGLMKDNAD NMQTVPKYAPIEMGGMDEGGSENGLTMCSIRYNGESVMSWDLEQYYRNLSTGGGTYKIRK SRKEFVEKTIDPRCLVSWYRGNMTQSMISEGKESVREDFKGCKRGAQAPDISMSTLSYSL VRCQPKPLSKKLDPKYWFNDARPTVWLGYSESLFLKAEAALRGWTGADLTQNAENYFKEG VQASMDYYQIDKTEAQSYINGLKVWNDGVFSSGDKERILEAIITQKWLAVFPNGNEGWAE FRRTDYPVLANQLTNMSGGDVPDGKNIKRIFYPNSENSNKAFTSNPDLLKVNSQGKRLWW DVEDTNDNSGKRIKPNNFRMAVVK >gi|281305787|gb|ADEF01000021.1| GENE 16 18024 - 22286 3408 1420 aa, chain + ## HITS:1 COG:BH0785_1 KEGG:ns NR:ns ## COG: BH0785_1 COG4724 # Protein_GI_number: 15613348 # Func_class: G Carbohydrate transport and metabolism # Function: Endo-beta-N-acetylglucosaminidase D # Organism: Bacillus halodurans # 6 552 10 552 556 275 32.0 6e-73 MKLHRLLFVTLFMILYSGIAKAQQPYGGCWHPDYVRNWSPDTDPNAKFNRSKVPLAKRFK EPTLMKANKNQYYEGQVCNATILFPTCSSSPSQGANNFLGYQPTYWQYMDKLVYWAGSAS EGIIIPPPAGSIDAAHQSGVKVLGQIFFPPAYFGGKQEWVRQVLEQEGGKYVFARKLYEI AKYFGFEGWFINEETGGGSISEWKGLIKEFNEIADAAGDTDMEIQWYNASGYPNSTILKT HKNTSQFLEYGSVGDYRNQAAALGISEAETFSKIYAGIQCVNSGLTGYGATLRRAFPTTG HVGSVDLFCPEERAWKDHVKNYLGGNSTNQGPTAYAATKKVFESEEKVWVNYSGDPSVDT DQYGWPGFSGCILERSVIDKMPFVSSMSVGDGKHRFVEGEKQGTQDWYHSGLQSILPTWR WWIENKGDLQVSIDWDDAWNIGSSFKISGTLTSGDHLMRLYKTQIKVETGGVLRVIYKNS STAKIEAKLSTESSTAPNETLSNPKLTEKNGWTIADFDLSSLNGKTVYMIALNLKADADI ADFTMNLGELAVLPAGYAPKKIQVSNFKTTSSLGDEGGDVRLTWDYTYTDDFDHFDIYTV NQDGSRNLVGQTRGEGFYIPEVKRSGLDKHIDVELVPVMKDMVQQQAEKIQVNYPEPKAP VVTLALSKSYVKVGDKVTLTVKGTGNPTSFEWILPEGLELAEGSSLSESSIVVVAKSEGK KKVTVKATNAVGTSEIAIDALDVFTTEEDLNLVTNVIVNKRVVSFSGSTNGQEVPAKIID GVTNPGSVSDKWCNVSPDNWAIFDLQGVFRVYGFKIYDGNAGPESGVDQIDRYQIQVSDD MNTWTTVVDESRKEGVTIKEDYIAPIRARYIKLIPHVNGTLRIWEFEVFGVSDNNMKMTV DKELTINAGTTQNIVVKYDLNGDTRENPFTCSAEPDNDNVSVGEITENVNEGTFTIPVTA KKIIGKTSLKIKIDNGGAYTEGIVKLTIDDKTRPNILKGGKATLRLYDADYSFEAPYKEQ ELSTLTDGDLRENACEDVEHVSTHKDDVWAIFTAPDEKGWNLSKVVVTIPYDNMGTDDNG DDSQTNKEIKIAMGDDLTRLPIIKTFDNLDKLPINADGTIKLECILPEFKNVKYLAVICN LNALHYPLLSEVEAYEQLAEAVPVVEPVEISNWNADVIVEQKDATTHSSRSLDTQGWCLF TTGVQEKGAISDDSRMVVSKRGIKYQLADYTQNNAYILKNAWNWTPLTFAKPVECEEVYI LMICANGDARLSTQIQYEDNSVLYTSCQPSDWFENFNDGNAAVRELGRIKRGAADEFKEN DIDDRYQFRLYEFEIATDASKKIKAIKFLDQSWGNPIPTVLAISRKGIPLSTSIQSVASE QGEVKIIGIYNLQGMKLNAPVKGLNIIKFSNGTTKKVMIQ >gi|281305787|gb|ADEF01000021.1| GENE 17 23230 - 24243 877 337 aa, chain - ## HITS:1 COG:alr4032 KEGG:ns NR:ns ## COG: alr4032 COG0609 # Protein_GI_number: 17231524 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Nostoc sp. PCC 7120 # 2 336 17 353 362 218 41.0 2e-56 MSHTSNKFVFAMLGVAMLLLVMFNLLLGSVYIPAADVFSILCGQDVSNDSWTYIILESRL PQTVAALFCGAALAVSGLLLQTAFQNPLAGPSIFGINSGAGLGVALVMLAMGGSMSTALF SVGGAMAILLAAFVGAMVVTSIILVFSQWVKNNVMLLIIGIMIGYLSSSVIALLNFFATQ EGVKSYMIWGMGNFSNVSLPQLPIFTIAIIVGLIGAMLLMKPLNALLLGERYAQNLGVNV RVVRGWLLVVTGVLTAVTTAYCGPVAFIGLAVPHMARLMVGTENHRTLLPLTMLMGAVIA LLCQCICTLPGSQGVLPLNAVTPLIGAPVVIYIVWKH >gi|281305787|gb|ADEF01000021.1| GENE 18 24380 - 25153 798 257 aa, chain + ## HITS:1 COG:CAC0908 KEGG:ns NR:ns ## COG: CAC0908 COG1179 # Protein_GI_number: 15894195 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Clostridium acetobutylicum # 5 249 6 249 251 227 47.0 2e-59 MENEFTRTEMLFGSSAIETLKHSHVAVFGVGGVGSYVVEVLARSGVGELTLVDNDEVSIS NLNRQLVALHSTLGKKKVEVARQRILDINPSCKVHIHSLFYLPETAEQVDLSACDYVVDC IDTMAAKIELVKQCHQLQLPIIASMGAANKIDPTQFKVADISKTAMDPLAKVLRKKLRKM GITHLKVVYSEEPPRKPFEIESTTVLTSPLEETVKAPTTNQKRMTPASNAFVPATAGLIL GGEVVKDLIRMKSATSD >gi|281305787|gb|ADEF01000021.1| GENE 19 25150 - 26016 373 288 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15895122|ref|NP_348471.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium acetobutylicum ATCC 824] # 1 276 1 274 642 148 30 1e-34 MIQIEIDSGSGFCFGVTTAIQKAQEELEKGETLYCLGDIVHNGMEVKRLHEQGLETITHQ ELQNLHNAKVLLRAHGEPPETYALAKKNNIEIIDATCPVVLALQRRIKKQFDTHQDAQIV IFGKNGHAEVLGLVGQTQNKAIIIENFEDVKQLDFSRDIYLYSQTTKSLDEFHRIISYIQ NHIAATASFRSFDTICRQVANRMPNIANFASKHDLILFVSGRKSSNGRVLYMECKRVNPN SYQIEDVDEIDFNWLQGVQTIGICGATSTPKWLMEKCRDHILAHLQDC >gi|281305787|gb|ADEF01000021.1| GENE 20 26021 - 27085 653 354 aa, chain - ## HITS:1 COG:no KEGG:PRU_0159 NR:ns ## KEGG: PRU_0159 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 5 353 6 356 356 293 42.0 8e-78 MNRLIIALTFLALPVLAHGQQIRAVNEVIDCGQIIFKHPVTAEYEIKNTGHQDLLINKVM TDCGCTTVDYPRKPIAPQTSATVKVVYDSKLLGTFQKQIALLSNASTQPYLLRLRGKVVE EIVDFAGDYPFHLGELQTDVNNIEFDDVNRGDRPQIKIHIKNTTNEMAEPVLMHLPSYLQ AEMSPSRLAPGHAGVATITLDSRKIRDYGLTQTGIYLGFVPGDKVAPTKELTVSAVLLPD FKDAGEQARIAMPKMQLSATTLHLGNFGNKRKQSGRILIQNMGRATLEIERLQMFTGGIK VAMNKSRIEPGKIAKLKVTVVEEELKKVRSKPRILMITNDPDQPKVIIDIEVEK >gi|281305787|gb|ADEF01000021.1| GENE 21 27082 - 32607 3649 1841 aa, chain - ## HITS:1 COG:TM0984 KEGG:ns NR:ns ## COG: TM0984 COG2373 # Protein_GI_number: 15643744 # Func_class: R General function prediction only # Function: Large extracellular alpha-helical protein # Organism: Thermotoga maritima # 382 673 101 384 1536 80 27.0 3e-14 MNRLITLWVVVLVLISSPMKADNFAVLWKKYEQAKQKDLPKTSLHVLEQIIKKAETEQKY GHLLKASFLHGLMATQISPDSTTVELTKLKERLRQAERKDRVLAAVYQSALGQLYAENLT LGDNSVTLSEQYFKQSLAEPALLASYKSATYEPFTVSGVDSKIFNHDLLHVLGFEAQRYD LLHQYYLSHENRPAACITALYELREKYRSDVLQAKKSKYIQKLDSLIAVYKDLTEAGEVA IERYQCIEEAEDISAEQKIQYINYALMKWGAWPRINILRNAKTRLTLPTFHVSLGDAVAI PHQERQVVVLQLCNIQQLNMSVWRVNVNGDTQLDPNDARDYARLRPHIDTKTPVCTTSKQ YVGMPDYQMVRDTMTIKGLPVGVYLVELTTDNKAIQPQRALLRVSDVYLLSQSLPHHQLR MVAVSATTGQPLPGAKIQLRKDEQSGRAYKQQVYTCNQEGEVTVTIKENRTYYAYPYTQS DKACAMTYLNGYGFFPKEKKSDALYVHLFTDRSIYRPGQTVHASAVAFRLINGKETTVAT HQTLTLTLRDANYKEVGVQKVTTDEYGTAVADFVLPSTGLTGTYSLRSNQGRDAYASLSV EEYKRPTFYVEFDTILTKYQEGDTVRLAGHVKSFAGVPVAGAQVKYTITRSPMLWRYFEM RDRTQNVTIDIDTLATDNSGKFVINVPMIMPEKSNQTPQHYSFLTKVDVTDGAGETHHAE NALMLSDKPTTFLCDLTKQSRTDSIKPMTFSYLNSMGVAIDGDVHYTIDGKSYHVKANQP TLHGLEKLSSGEHHLMAVCGQDTLRHIFYTFSLGDKKPAFKTSDFFYITETTFPNDGKPV QLMLGSSDTNVHVVYSFIAGDRVIESGSLAMSNQIIKKKLKYQSQYADGLLLNYAWVKNG KCYTHRQLIAKPQPDKRLMLTWKTFRNRLTPGQKETWTLQIKTPNGKPAKAQLMAVLFDK TLQEIKEHAWKYYIPYQPAWATTFWEKPNIESAMLYGDAPFTPLRERPINFTYFDDVFAG FGQSDEVVVIGYGGGVRTRALSKLNVMSKAEAFSDETMSVDGAHDDKSLQLKQKEAMPAS QVDSSTKSNAQPTIRENFNETAFFFPALIADDKGQVSLKFTLPESVTTWQFMGLAHDEEM HHGFLMDETVAQKKVMIQPNMPRFVRKGDQLTLSARVMSTSQRIETGTARIELVDPATEK VVFTQQKSYELQPEATDVVTFAIDMVQLLKAHPKLSLLVVRFTAKGKNYSDGEQHYLPIL TDDEWVTTTVPFTLHDKGVKTIDLQKLFPVHDDRNLLTVEYTQQPAWLMVQALPNMGNID DDNAMSLVAAYYANSIGQHLFNEVPQLQSVVKLWKQEKGKETSLTSALEKNKELKTVLLN ETPWVMNAQKETYQQQQLVEFFDSNMMSYRLTSLLQKLSKLQNTDGSFSWWKGMSGSRYM TVAVVMTLARLNTLIGHQTSTQSMIASSLRFLDRKLSEEVAELKARQAKGEKDLFPSEFA CNCLYTYALLDKRSNGNINYMVNLLSQQPTVLSIYGKARTAVILSLYGKQAKANEYLQSI QEYSVYTEEMGRYFDAPRANYSWFSYRIPTQVAAIEAMKLLKPNDSSIEEMQRWLLQSKR TQAWDTPINSVNAVYAFLHGQTQKLTTGAQSDRFQLNGQPLEMPNETAGLGYVKTAKTGK DMRQLTIDKTSAGTSWGAVYAQFMQKSTEVVDQSSGLKVTRTLLRDGKPAQTFKVGDRVT VRLVVEANRDYDFVQLQDKRAACLEPLHQRSGYAWGYYYAPKDNVTSYYFDQLSKGKHVI ETEYFIDRAGTYQTGICTIQCAYSPDFNGRAAGQTLKISEK >gi|281305787|gb|ADEF01000021.1| GENE 22 33536 - 36127 1823 863 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 852 1 801 815 706 45 0.0 MTFDKFTIKAQETVQEALRIAEQAGQQSIEPVHLLQGLLTKGKEVTNFIFQKLGVNPSQI QQLVQSEIAHLPKVSGGQPYFSNDTDKVLQTTVDLSQSMGDQFVGLEPLLLALLTVTTTA SRILKDAGCTEKEMRKAIEELRKGEKIQTQSGDENYQALEKYAKNLVNEARAGKLDPVIG RDEEIRRVLQILSRRTKNNPILIGEPGTGKTAIVEGLAARIVRGDVPENLKNKQLYSLDM GALVAGAKYKGEFEERLKSVIKEVTHANGDIILFIDEIHTLVGAGGGEGAMDAANILKPA LARGELRAIGATTLNEYQKYFEKDKALERRFQTVLVEEPDELSSISILRGLKERYENHHK VRIQDDACIAAVQLSERYISDRFLPDKAIDLMDEAAAKLRMERDSLPEELDEMTRKLKQL EIEREAIKRENDEVKIKQLDKEIAELKEQEQSFRAKWESEKSLVNKIQQDKQEIEHLKFE ADRAEREGNYERVAEIRYGKLQSLQADIENIKKQLKATQGGEGMVREEVTADDIAEVVSR WTGIPVTRMLQSEKDKLLHLENELHRRVIGQDEAIVAVSDAVRRSRAGLQDPKRPIASFI FLGTTGVGKTELAKALAEYLFNDESMMTRIDMSEYQEKFSVSRLIGAPPGYVGYDEGGQL TEAVRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRTVNFKNTIIIMTSNLGS QYIQQQMQDITPLNREEKLEHTKLEVMNMLKKTIRPEFLNRIDETIMFLPLTKHEIADVV ELQMNAVKHMLQTQGFSLEWTQGAIDYLCDKGYNPEFGARPVKRAIQRYVLNDLSKKLLA GKVMNNRPIKIDGTPDGLTFSNA >gi|281305787|gb|ADEF01000021.1| GENE 23 36257 - 38395 1052 712 aa, chain - ## HITS:1 COG:CAC0746 KEGG:ns NR:ns ## COG: CAC0746 COG4412 # Protein_GI_number: 15894033 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 111 340 143 402 781 103 29.0 2e-21 MKRVLVFLLILCMTLCVNAIPAKRKGYTTIRLTDGREVLATLVGDEYLHYMQAEDGQQYI YNPVLGGFEALDLANLKRTAAVTRSQINQVRRHRRLVTAKILQENRTQIKKALLLLVQFP DKQFLPEHTPLLYENICNTPNFQHELGFKGCVKDYFKAQSNGLFDLAFDVKGPINLSHPY AYYGENNKAGEDIRPEEMVKEACRAIDAQVDFADYDWNHDGEVDAIYILYAGQGENTAYK TDPQTIWPHQSELSSTDDILTLDGVTIRPYACSAELIGIHQIDGIGTICHEFSHLLGLPD MYDTVNQENYGMCTWDIMDQGAYNGNAFVPAGYTSYERMFCGWMTPHKLTKDTLVQNVKP LSEGGESYILYNDGHLNEYYLLENRAKTKWDAYLDGEGLLVLHVDYDAQAWSDNEVNTDN SHQRCTIFHADGSDRYLTSLGMFHSAEVAGDPYPYKGNNCLTSTSQPAAHLFHANAQGSM LMNKNLTNIQRHTNGTVSFQLSVGTRTADDTAAPLPDGVLFHETFNQCHGTGGNSGGFRG RVATQRSQYLPDVQGWIVPSGAAYGGDRCARFGSAKYRVGIVFSPSFMAIGTDTLIFVAA PFGNDGNSVDVYINDKLLDSFTLQTDTWTTISAPFEGKGTTVIKFVPDRRLFLDDVKVVG PRSTTSHIQSFPTIHPSPYTHRFYNLHGQYVGDDLSRLPQGIYVINGRKILK >gi|281305787|gb|ADEF01000021.1| GENE 24 38614 - 40608 1744 664 aa, chain + ## HITS:1 COG:PH0361 KEGG:ns NR:ns ## COG: PH0361 COG1297 # Protein_GI_number: 14590271 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Pyrococcus horikoshii # 24 630 2 597 626 247 30.0 5e-65 MENKLKESVELPDNAFRELKEGEEYQPVMNPKQVYPEVNAWSVTWGIVMAMLFSAAAAYL GLKVGQVFEAAIPIAIIAVGVSTATKRNKALGENVIIQSIGACSGAVVAGAIFTLPAIYI LQAKYPEMSASFLKIFMSSALGGIIGILFLIPFRKYFVSDMHGKYPFPEATATTQVLVSG AKGGAQAKPLLVAGLVGGVYDFIVATFGWWNENFTSRVMGWGEQVADQAKLVFKVNTGAA VMGLGYIIGLKYTFIICLGSFAIWWLIVPGLSLFFGDTILNIGGTVVSMPVGEMSPETIF ATYGKSIGIGGIAMAGIIGIIKSWGIIKSAVGLAAQEMKGKDNSKKEEIRTRRDISFKVI AIGSIAAIVITFLFFLFGVMNNFTHALVAILLVAGIAFLFTTVAANAIAIVGSNPVSGMT LMTLILASVVMVAVGLNGPEGMLAALIMGGVVCTALSMAGAFVTDLKIGYWLGTTPAKQE TWKFLGTLVSAATVGGVMMLLNQTYGFDPEQQGHLVAPQANAMAAVIEPMMNGAGAPWLL YGIGALIAVVLTLVKIPALPFALGMFIPLELNIPLLIGGIIHWFVTSRSKDKQANKARGE KGTLLASGFIAGGALMGVVSALLRFTGYNPINPEWLANPLSQLLSLAAYLLLISYFIMAT RVKK >gi|281305787|gb|ADEF01000021.1| GENE 25 41241 - 42428 1137 395 aa, chain - ## HITS:1 COG:BS_kbl KEGG:ns NR:ns ## COG: BS_kbl COG0156 # Protein_GI_number: 16078763 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Bacillus subtilis # 27 390 25 388 392 290 39.0 3e-78 MGQLQERYQHYREPQKYIEAGVYPYFREITSKQGTEVEMGGHRVLMFGSNAYTGLTGDDR VIAAAKAALEKYGSGCAGSRFLNGTLDLHVQLEKELATFVGKEDALCFPTGFSVNQGVLA VVVGRNDYMICDDRDHASIVDGRRLSFATPLRYKHNDMQDLERILQKLPHEAVKLIVVDG VFSMEGDLANLPEIIRLKKKYNCSVMVDEAHGVGVFGKQGRGVCDHFGLTDDVDLIMGTF SKSLASIGGFIAGDKDTINFLRHTCRTYIFSASDTPAATAAAQKALHILQAEPERIEKLW EVTRYALRRFKEEGFEIGNTESPIIPLYVHDIDKTFMVTKLAFDHGVFINPVIPPACAPQ DTLVRFALMATHTIEQVERGVQVLKRVFQQQGIIA >gi|281305787|gb|ADEF01000021.1| GENE 26 42641 - 43666 859 341 aa, chain + ## HITS:1 COG:BH1953 KEGG:ns NR:ns ## COG: BH1953 COG1597 # Protein_GI_number: 15614516 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Bacillus halodurans # 6 271 4 279 295 111 26.0 2e-24 MKKIWFIMNPISGTTNKGGIPKLIDNTLDKTQFEYEILETTHPGHASELATEAKEKGVDI VVAVGGDGTVNEVARAIVHSHTALGILPCGSGNGLARHMLLPMNLKKAIQVINKCVIHPF DYGIINDMPFFCTCGMGFDAFVSQKFAECGKRGPITYVQKVLEEGLKYQPETYEIIDDHG VNKYKAFLISCANASQYGNNAVIAPQASMSDGYMDVIIMEPFDLIEASQISIDMFNKTLD KNSKIKTFRTKKLHIKRSKPGVIHYDGDPVMTGKDIDIELQEKGIKIIINPDADRRQRQP NAFQSAAAELFNEINVVREDISKQTRHIQALSRVLQKKLNI >gi|281305787|gb|ADEF01000021.1| GENE 27 43764 - 44465 475 233 aa, chain - ## HITS:1 COG:ECs3441 KEGG:ns NR:ns ## COG: ECs3441 COG4123 # Protein_GI_number: 15832695 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Escherichia coli O157:H7 # 6 232 53 283 285 156 40.0 3e-38 MSNDWFQLKEFRVRQDRCAMKVGTDGVLLGAWAQGGQRILDVGTGTGLIALMMAQRYPQA RIVAIDIDCEACKQAAENVATSPFADRIAVDNVPLQQLNDTEEFDAIVTNPPYFIDSLRN PDEQKALARHACSLPYKDLCKGVQLLLSSRGIFSVVLPTDNMEKFVAEAAFAGLYLYKQY KIKTHLRKEPKRCLMAFTKFRPNCLEIKECTLLDEQGQKSEWYKALTHAFYLH >gi|281305787|gb|ADEF01000021.1| GENE 28 44486 - 44668 74 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKTFHWVLKSNKKITFKRQLNFTITKIEYFFETLKKYHEKNDLQHGALTSPHTRTPENE >gi|281305787|gb|ADEF01000021.1| GENE 29 45375 - 47864 2498 829 aa, chain + ## HITS:1 COG:SMc01905 KEGG:ns NR:ns ## COG: SMc01905 COG0466 # Protein_GI_number: 15965010 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent Lon protease, bacterial type # Organism: Sinorhizobium meliloti # 32 810 15 781 806 620 43.0 1e-177 MSKKNNASIQMIADYEGDISNLFNVNVEGEVPVLATRNMVMFPGVLCPILIGRDNSLKLI ETVKKSPNTTFAIFCQKNSETEEPQQEDLYEYGVYARLVRVLEIPGHGQNVTAIVQSLGR CKLDKITKKTPYLQGLTHLEPEILPKEGDSEYHAAAEDLRKQTIEYIKENDDIADEAQFA LSNLQNDVLTINYICTNMPFSIGDKMKMLMVDSMIERILVSLKVLNKEMQLLELQKDIRT KTREDLDEQQREYFLQQQIKNIREELGNADGSPERRELEEKAKKKHWNEDIEATFEKELD KLDLLNPQSPEYSVQLSYLQTLVSLPWGEFTKDNLDLRRAARTLDRDHYGMEKVKERILE YMAVLQLRGNLKSPILCLYGPPGVGKTSLGKSIASAMKRKYVRISLGGVHDESEIRGHRR TYIGAMPGRIIKSLQKAGSSNPVFILDEIDKVTQNTINGDPSSALLEVLDPEQNNAFHDN YLDVDYDLSHVMFIATANDLNTIPRPLLDRMEIIQVSGYITEEKIEIAKRHLIPRELKNT GLDTHSPKVKFNKASLEKIIEQYTRESGVRQLEKQINKALRKMAYNKAMEGNLDYTDITA EKIEGLLGKPPFYRDIYQGNDYAGVVTGLAWTSVGGEILFIETSMSKGKPGKLTLTGNLG DVMKESAVIALEYVKAHVDALGIDYRVFDQWNIHIHVPEGATPKDGPSAGITIATSIASA LTQRKVRKNTAMTGEITLRGKVLPVGGIKEKILAAKRAGITDIVMCKENKKDIDEIPEKY LKGVDFHYVENVQQVWDFALTDERVDHPIDLTVEDESKRPSKQIEEVLA >gi|281305787|gb|ADEF01000021.1| GENE 30 47876 - 49003 875 375 aa, chain + ## HITS:1 COG:SA1465 KEGG:ns NR:ns ## COG: SA1465 COG0343 # Protein_GI_number: 15927219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Staphylococcus aureus N315 # 1 372 4 370 379 383 50.0 1e-106 MTFELQHTDPNSSARTGLITTAHGQIKTPIFMPVGTVGTVKAVHFSELKQQVKAQIILGN TYHLYLRPGLEILKAAGGLHQFNGWDRPILTDSGGFQVFSLTGIRKLTEEGCEFRSHIDG SKHFFTPENVMDTERIIGADIMMALDECPPGDCDYQYAKQSLGMTHRWLDRCIKRFKETE PLYGYDQCLFPIVQGAAYKDLRQESAKYIADKGADGNAIGGLAVGEPTEVMYEMIEVVND ILPKDKPRYLMGVGTPQNILEGIERGVDMFDCVMPTRNGRNAMLFTYEGTMNMKNKKWEN DFSPIDSSGCDIDMVCTKAYLHHLFKAKEYLALQIASIHNLAFYLRLVTDARQHIEQGDF VSWKRSIIEQLGRRI >gi|281305787|gb|ADEF01000021.1| GENE 31 49065 - 50240 716 391 aa, chain + ## HITS:1 COG:FN1030 KEGG:ns NR:ns ## COG: FN1030 COG0795 # Protein_GI_number: 19704365 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Fusobacterium nucleatum # 31 389 2 361 363 84 23.0 4e-16 MHRLTAPIGSLFQWLAHKLRFLKILNPKKYIKRIDWYIIKKFIGTYIFSIALIIAIAIVF DFNENLSKFTEYKAPVRAIIFDYYANFIPYFSNLFSPLFVFIAVIFFTSKLAGNSEIIAM LATGISFKRLMRPYMISCILIASVSFFLSAYVIPHGTVVRQNFDNLYKNNKKRSAADNVQ LQVDKGTIAYIQHYDNKTKRGYGFSLDKFKDKKLVSHLTAMEIQYDTIADAKYHWTVTGW KIRELKGLREHITSGAERDTVIMMEPMDLVYSKGQQETFTSPELREYISKQVNRGSGNVV QYQVEYHKRIASSFASFILTIIGLSLSARKRKGGMGLYLGLGLALSFLYILLQTISATFA INADAPPMLAAWVPNILFSVVAYFCYRQAPN >gi|281305787|gb|ADEF01000021.1| GENE 32 50370 - 52121 1318 583 aa, chain + ## HITS:1 COG:STM3280 KEGG:ns NR:ns ## COG: STM3280 COG0513 # Protein_GI_number: 16766578 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Salmonella typhimurium LT2 # 3 397 25 409 646 301 40.0 2e-81 MKFEELPLNNNVLDALYDMHFDTCTPVQEKCIPGILKGRDVLGVAQTGTGKTAAYLLPIL SKIDSNNYPDNAINCLIMSPTRELAQQIDQAMQGFGYYLQGVSSVAVYGGNDGNRYDQEV KSLRLGADVVIATPGRLISHINMGNIDMSKISFFVLDEADRMLDMGFADDIMSIAKGLPK TCQTIMFSATMPDKINDLARTLLKNPVEIKLAVSKPAEKIKQCAYICYEAQKLKIIEDIF KKGDLKRVIVFCGSKLKVKQVAAALHRMNVNCSEMHSDLEQAQRDEVMLNFKSGQLDVLV ATDIVARGIDIDDISMVINYDVPNDAEDYVHRIGRTARADRDGQAITLVAQDDTYLFEQI EKFLGKEVEKIQLPEGIGEAPEYTSGRRPQRRGTKAKSIRRKDRNQTAHKHKPRRQNDQQ NETSQTVDASKNNNAPKDSEQREKQTSRKGRRKNVQPQRNNQVAKQKSENERTDEKSTEQ QPKNQNKRCTQNRNKNRNNKSRSQQDNNQPNVEGRNKKATKPNNERQTKKQGTSKNQNKR QKQEVTYQGTRKFEAPKNQQKTESGFTSIIKKPLRWLKSLSKK >gi|281305787|gb|ADEF01000021.1| GENE 33 52316 - 53143 561 275 aa, chain - ## HITS:1 COG:SMb20552 KEGG:ns NR:ns ## COG: SMb20552 COG4099 # Protein_GI_number: 16264279 # Func_class: R General function prediction only # Function: Predicted peptidase # Organism: Sinorhizobium meliloti # 45 245 41 243 243 113 33.0 4e-25 MQVFLRSSLLSLYLLVCVFSASAQSLKPQGIFEKQQNVITGGYSFWLYKPADYIDDDHDF PLIIFLHGASLCGRNLNKVRRYGVLDAIDRGKVIPTLVVAPQNPGGAWSPSKLNDLLEWM KSHYRVDSTRVYVLGMSLGGYGTMDFVGTYPDKIAAAMAFCGGCSLKNQDGLGRVPLWIM HGTADRAVSINESKKVVEYLQQKDMDHLLRYDWMQGGGHGAPARLFYLQKTYDWLFYHSL KDSPREVDRSFDITPEDIKTTYQELRALPHMYDKD >gi|281305787|gb|ADEF01000021.1| GENE 34 53973 - 55127 879 384 aa, chain - ## HITS:1 COG:BS_ykgB KEGG:ns NR:ns ## COG: BS_ykgB COG2706 # Protein_GI_number: 16078366 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Bacillus subtilis # 29 362 8 345 349 169 30.0 1e-41 MKLRKIFLIILTFCIGLPLDAQNNIKLIVGSYANEIGKGIYSFDFNQSTGKATPLDTLEV SNPSFLTLSSDGAMIYAVSENSEDAASVHAITFDQATGRMKLRQSMPTNGADPCYVETNG NLLLTANYSGGSMSVFPLNIDGSLEPMSQQFKGHANGPDAQRQNMPHIHCTRFLPDGNGV LATDFSADQLLRFELTDMKALGDQKVTAQLTKGSGPRHIAFSTDSRFVYVMSELSGAVTV YQYNFGKMKKIQEILSDEVGAQGGADIHVSPDGRFLYTSNRLKNDGITIFKIANRTGLLT KVGYQHTGIHPRHFNITPNGRFLLCACRDSNVIQVFRINSATGLLTDTHQDISVDKASCV QFYPIVMQPDLNGDGVFRVIEVTK >gi|281305787|gb|ADEF01000021.1| GENE 35 55234 - 56667 775 477 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 38 473 22 425 447 303 38 2e-81 MAINNSNLCIIKELFVFLYLRMNNIQLTPFRKGVVGVQFLFVAFGATVLVPLLVGLDPAT ALFTAGIGTFIFHLVTKGKVPIFLGSSFAFIAPIIEASKMWGMPGTLAGIAGVALVYFLM SALVKWQGRKLLNRLFPPVVIGPVIILIGLSLSGSAVNMAKENWLLAFVALVTAITVLMM GKGLLKLVPIVCGIIVGFIVAALLGEVDFSKVQSAAWFALPGSLSNFHWPEFAWKPFIYM IPVAIAPVIEHIGDVYVVGAVAGKDFVEEPGLHRTMLGDGLACLAACFFGGPPVTTYSEV TGAMQITKVTHPQVIRISALTALVFSVIGKLSALLQSIPQAVLGGIMLLLFGTIASVGVQ NLIQHKVDMNHQRNVIIVSVTLTLGIGGAILDFTLRGILIGVLMVICLMYANSLKSNRWK ALCCIIGGILASLVVFFYLPGGEGELTKMSGIGLSAIVGVVLNLVLPKDKEEEMREG >gi|281305787|gb|ADEF01000021.1| GENE 36 56657 - 57001 135 114 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282878930|ref|ZP_06287694.1| ## NR: gi|282878930|ref|ZP_06287694.1| hypothetical protein HMPREF0650_0600 [Prevotella buccalis ATCC 35310] # 3 113 2 112 113 147 65.0 2e-34 MKDDAFELYWQSHRRELLSKNKEYREIEGSYKMRTGFDWLLWAVPLVCGILAFKLVAGAN EILNWLLSAAVVIVTFLLCVWIKATLSGHRSLSEVEEDVKKQAYEEFKHRLNQS >gi|281305787|gb|ADEF01000021.1| GENE 37 56976 - 58136 781 386 aa, chain - ## HITS:1 COG:SP1409 KEGG:ns NR:ns ## COG: SP1409 COG0635 # Protein_GI_number: 15901263 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Streptococcus pneumoniae TIGR4 # 5 384 9 374 376 225 31.0 1e-58 MAGLYLHIPFCASRCIYCGFYSTTNLSLRQKYVDALCQELRLRRDYLSDIETNLSEDTHL IRTIYIGGGTPSQLTPAQLQQIFEVIGSIYFNGNLSTMRSQCEVTLECNPDDISPSFVEF IEQSPINRISMGVQTFSNAQLNFLHRRHQAEDVATAVNRLREIGVDNISIDLMFGFPNQS LAAWERDILQVLDLGVEHISAYSLMYEEGTPLNQLLKSNKIHEIDDELSLQMYQALVHHL KAAGYEQYEISNFAKPGKQSRHNSSYWHAIPYLGIGAAAHSYNIKSRQWNVSDLKTYITA IQQGKIPAEKEWLDADTRYNDLVTTALRTSQGIRLSALTPRYRSFLLQQAKRFIDQHLME IEGDYIRLTTEGIYISDAIMTDLIYA >gi|281305787|gb|ADEF01000021.1| GENE 38 58268 - 60430 1870 720 aa, chain + ## HITS:1 COG:FN1546 KEGG:ns NR:ns ## COG: FN1546 COG0480 # Protein_GI_number: 19704878 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Fusobacterium nucleatum # 1 715 3 690 690 432 35.0 1e-120 MKVYQTNEIKNIALLGSAGSGKTTLAESMLYGSGIIKRRGTVEAKNTVSDYFPVEQEYGY SVFPTVFHVEWNNKKLNIIDCPGADDFVGGAITALNVTDQAVILINGQYGPEVGTQNNFR YTEKLKKPVIFLINQLDSDKCDFDVVINSMKDIYGSKCVQIQYPVQTGSNFNEIIDVLLM KKYSWKEEGGMPIIEEIPEEDKEKALELHKALVEAAAENDESLMEKFFDTESLTEDELRE GIRKGLVTRSIFPVFCVCAGQDKGVRRLMEFLGNVVPFVNEMPKIHNTRGEEIDPNSDGH TSLYFFKTGLEPHIGEVSYFKVMSGSVKSGDDLINADRGSRERIGQLYACAGSNRIAVDQ LNAGDIGCTVKLKDVKTGNTLNEKDCEWRFDFIKYPNSKYSRAVKAVNAGDTEKVMAALL KMRQEDPTWVVEQSKELRQTIVRGQGEFHLRTLKWRLENNDKLPIVFMEPKIPYRETITK QARAEYRHKKQSGGAGQFGEVHLIVEPYAEGMPDPTHYKFNGQEFKMNIKSKEEVDLPWG GKLVFINSVVGGAIDLRFIPAIQKGVMDCMEQGPLTGSYARDVRVVVYDGKMHPVDSNEL SFTLAARHAFADAFKNAGPKILEPIYDLEVFVPGDYMGDVMSDLQGRRALIMGMDSEAGY QKLVAKIPLKELSNYSIALSSITGGRASFTTKFSSYELVPNDLQSQLIAEHEAEKGSDED >gi|281305787|gb|ADEF01000021.1| GENE 39 60748 - 62217 1193 489 aa, chain + ## HITS:1 COG:TM1654_2 KEGG:ns NR:ns ## COG: TM1654_2 COG0642 # Protein_GI_number: 15644402 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Thermotoga maritima # 245 485 28 269 272 120 31.0 7e-27 MADMKKEQFDESVNRALNQAARNLEYNETFRYLQKDVNETERRAFIQDSIGTRSGKPDGT LQQSHQFSVTGKDGTMYSAFELKTITVKPSQMPKGMILQSDKNSLSEATKSLQEIVKNRY VYQRALLDEVVYSILYSASEKPLKERINFKLLDQDLKSELMNNGINIPYHFRVTTQDGRE VYRCSDYSDDGEEYTYSQVLFRNDPASKTGVVRLHFPDMNSYIFSSVRFIMPAIVFTVIL LITFIFTIVIVFRQKRYTEIKNDFINNMTHELKTPIASISLAAQMLNDKSLTKSEAMLNH LGSVIQDETKRLRFLVEKVLQMSMFDRKKAVFKKKQLDLNELIENISHSFALRVEHTGGK IYTDIGAVDSTIYVDEVHFQNAIFNLMDNAVKYGKPNQPLNIFLKTWNDKEYLYLSIRDT GLGIKKENLRKIFEKFYRVHTGNVHDVKGFGLGLAYVKKIVNLHGGDISVDSEYKNGTTF TIKLPVIKD >gi|281305787|gb|ADEF01000021.1| GENE 40 62245 - 62943 720 232 aa, chain + ## HITS:1 COG:lin2728 KEGG:ns NR:ns ## COG: lin2728 COG0745 # Protein_GI_number: 16801789 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Listeria innocua # 6 226 3 221 225 141 37.0 1e-33 MEEKLKILLCEDDENLGMLLREYLQAKGYIATLCPDGEEGYKEFLKDRYDICVLDVMMPK KDGFTLAQEIRQANAEMPIIFLTAKVLKEDILEGFKIGADDYITKPFSMEELVLRIEAIL RRVRGKKTKEKTVYQIGRFVFDTQKQLLTIGDKQTKLTTKENELLSLLCSHANEILQRDF ALKTIWIDDNYFNARSMDVYITKLRKHLKDDDQIEIINIHGKGYKLITPEED >gi|281305787|gb|ADEF01000021.1| GENE 41 63307 - 63504 112 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880327|ref|ZP_06289041.1| ## NR: gi|282880327|ref|ZP_06289041.1| hypothetical protein HMPREF9019_1686 [Prevotella timonensis CRIS 5C-B1] # 1 65 24 88 88 103 100.0 4e-21 MKRFLKKIKIAPSFGLYCVYAGVVVFLLSYITGWSRYNWVLFLGLFFVVLGIVAYTYLSR KQNKY >gi|281305787|gb|ADEF01000021.1| GENE 42 63603 - 63947 410 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|160885185|ref|ZP_02066188.1| hypothetical protein BACOVA_03183 [Bacteroides ovatus ATCC 8483] # 1 113 1 113 114 162 69 5e-39 MNHYETVFILTPVLSDEQMKETVAKFKTLLTDNGAEILNEEAWGLKKLAYQIQKKNSGFY CLFEFKGEPTLVDTLEIGFRRDEKVIRFMTVKLDKYAAQYAEKRKQKYANKKEA >gi|281305787|gb|ADEF01000021.1| GENE 43 63950 - 64219 421 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150010521|ref|YP_001305264.1| 30S ribosomal protein S18 [Parabacteroides distasonis ATCC 8503] # 1 89 1 89 89 166 91 3e-40 MAENKSEIRYLTPPSVDTKKKKYCRFKKSGIKYIDYKDPEFLKKFLNEQGKILPRRITGT SLKYQRRVAQAVKRARQIALLPYVTDLMK >gi|281305787|gb|ADEF01000021.1| GENE 44 64238 - 64816 478 192 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|34540405|ref|NP_904884.1| 50S ribosomal protein L9 [Porphyromonas gingivalis W83] # 1 184 1 179 179 188 55 6e-47 MEIILKEDIIGLGYKNDIVDVKRGYGRNYLIPTGKAVIASESAKKVLAEDLKQQAHKLAA KKAEAEKKAAALENVALEISVKVSATGVTYGSVTAATVAEELEKKGFAVDRKIITMRDIK KVGEYEATIHFHKEVEVKVPVTVVAENAPKAEVKSENADTAEKTGKTVDTVETAELEQKE SVEEADDTKTAE >gi|281305787|gb|ADEF01000021.1| GENE 45 65153 - 65590 429 145 aa, chain - ## HITS:1 COG:no KEGG:PRU_1780 NR:ns ## KEGG: PRU_1780 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 143 1 142 144 189 65.0 3e-47 MTIAVDFDGTIVEHRYPEIGEELPFATETLKMLIKDQHRLILWSVREGKLLQEAIDWCKE RGVEFWAVNRDYPEEDGTKNNNHFSRKLKADLFIDDRNVGGLLDWGQIYHMIHDHKTVKD LIREAVNQQLLAAEPPKRKRHWWSR >gi|281305787|gb|ADEF01000021.1| GENE 46 65668 - 68166 1692 832 aa, chain - ## HITS:1 COG:alr2856_2 KEGG:ns NR:ns ## COG: alr2856_2 COG0489 # Protein_GI_number: 17230348 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Nostoc sp. PCC 7120 # 541 793 2 253 275 117 27.0 9e-26 MEDIKNQELKKIDEQEESSFFNFETIYTTLVLNWKWFVLSLIICLGIAAIYLRYTTPIYQ ANAKMLIKEEDNYRRGRNSALNTSTLGMMTNSAGIENEMEILSSLSLAEQAVRDLKLYTI YTSEGRVKDILMYQNQPIDVDIDPAHLDKLSTAINLYIQREGNSFHVTGNYNATDEQSQK AYTIDKTINKLPATLATKAGILTFNSRNAGSLKDGESFKVSIVSPKAMAAKFKSSFNVAQ SSKGNSIALLTLRDEIPFRAKDYLRQIVICYNRQANIDKNEIARNTEAFINSRLEKISAE LGATEGALESYKKRNRMVNQEMNAAQAMDNANAYDQKLAEANTQVALLKSVQESMGRPGG KYETLPANVGISDPTVNGLINKYNEIALQRNKLLRSASETSPTVTPLTSQLDDLNNSIHR AMSQAKKGLQIQRNSVASQYGKYQGQVSQSPEQERMLTQIGRQQDVKSGLYLMLLQKREE NSISLAATADKGTLIDEPATGGQVSPKRTMIFLIALLIALGIPSLILFLIQFFRYKIEGH DDVAKLTKLPILADVAVASESAKTKADIVVHENQNNQMEEIFRSMRTNLQFMMKENEKVI MFTSTTSGEGKTFNASNLAVSFALLGKKVILVGLDIRKPRLAELFEIDDHHHGVTMLLTK EQPTWAEIQSQILPSGINNNLELLLSGPVPPNPAELIARPSLQLIIDQLKQHYDYILIDT APVGLVTDTLQIGRVADATVYMCRADYTPKESFTLINTLAKEKKLPHMSIVINGIDMSKK KYGYYYGYGRYGKYGKYGHYGKRSYGNYGNYGSYGNYANSHYGDKNDTSIKR >gi|281305787|gb|ADEF01000021.1| GENE 47 68227 - 69108 684 293 aa, chain - ## HITS:1 COG:YPO3861 KEGG:ns NR:ns ## COG: YPO3861 COG1209 # Protein_GI_number: 16123996 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-glucose pyrophosphorylase # Organism: Yersinia pestis # 1 288 1 285 293 407 66.0 1e-113 MKGIILAGGSGTRLYPITKGISKQLIPIFDKPMIYYPISVLMLAGIREILIISTPFDLPG FKRLLGDGQDLGVKFSYAEQPSPDGLAQAFIIGEEFIGNESVCLVLGDNIFYGSGFSSLL HTAVADAEKENKATVFGYYVNDPERYGVVEFNQEGKCLSIEEKPKAPKSNYAVVGLYFYP NSVIDIAKHIQPSERGELEITTVNQIYLERQQLQVQTLQRGFAWLDTGTHDSLSEASTFI EVIEKRQGLKVACLEEIAFKKGWIGKEQLIKIAQPMKKNSYGQYLLELTQNKK >gi|281305787|gb|ADEF01000021.1| GENE 48 69011 - 69190 126 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLSKIGINCLLIPFVMGYKRVPEPPAKIIPFMIVKLGSFIYLYAKDKVVYNFINGNFT >gi|281305787|gb|ADEF01000021.1| GENE 49 69409 - 70038 624 209 aa, chain + ## HITS:1 COG:no KEGG:PRU_0228 NR:ns ## KEGG: PRU_0228 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 2 208 1 206 206 280 69.0 4e-74 MMKFLSNIFDKKGKQEKTGGMEDYMTLIRVYFQSAMAAQLGINNLKMLPDLRTFKTTLKV PTVNNKLGVGEKVHCKKMLKDIYKTNDNFCKEIDQSIRRNCRRMEDVQTYLLQFQGFTQE LMMLIGNLMKFKLRVPSIFKSAIYTMTEKTVNDIFTKNDYTDAAAMKAVVTIRKYNNRLG FSQKWVTDFVYQLVMLAKKEPKPADNEQK >gi|281305787|gb|ADEF01000021.1| GENE 50 70176 - 70469 281 97 aa, chain + ## HITS:1 COG:no KEGG:PRU_0227 NR:ns ## KEGG: PRU_0227 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 95 1 95 98 73 47.0 1e-12 MNANEKTLSLFTTRVRQMILQYQEMKQENDGLYEMVDEQNAKIKELEAQLEQAKQNYNSL KMARMIQISNVDMDVAKKKLSKLIRDVNKCITLLSGK >gi|281305787|gb|ADEF01000021.1| GENE 51 70442 - 70789 188 115 aa, chain + ## HITS:1 COG:no KEGG:PRU_0226 NR:ns ## KEGG: PRU_0226 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 13 111 1 99 99 97 54.0 1e-19 MYHTTEWKIVGVMAGDNRDKLQIRLHVYDTDMSVTVLRDDEEYYRQAAKLITDTVNTYSS LFKTKRSEKEILYMALIDIALRYEKESGRNDVKPFHEMMAQLTTEIEEAFKKQIP >gi|281305787|gb|ADEF01000021.1| GENE 52 70956 - 72488 1565 510 aa, chain + ## HITS:1 COG:CAC1816 KEGG:ns NR:ns ## COG: CAC1816 COG1418 # Protein_GI_number: 15895092 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Clostridium acetobutylicum # 3 510 10 514 514 407 48.0 1e-113 MGTIITMIIAIAVIGAIGYAVYQYVVKKKYNEIIAAANKEAEVLKEKKLLEVKEKFLNKK SELEKEVQSRNQKIQQSENKLKQKELGLNQRQEELARRKQEVDRQQQRIDNEKKLLEIKQ ADLDKLQLQEREKLEELSGLTAEEAKRRLVESLKDEAKTDAASYINEIMDEAKLNANQEA KKIVIQTIQRVATETAIENSVSVFHIDNDEVKGRIIGREGRNIRALEAATGVEIVVDDTP EAIVISAFDPVRREICRLALHQLVADGRIHPARIEEVVAKVKKQLDNEIIETGKRTVIDL GIHGLHPELVRIVGKMKYRSSYGQNLLQHARETANLCAVMAAELGLNPKKAKRAGLLHDI GKVPDEESELPHALYGGKIAEKFKEKPEIVNAIAAHHDEVEMQTLLAPIVQVCDAISGAR PGARREIVEAYIKRLNDLEAIAMSYPGVTKTYAIQAGRELRVIVGADKMDDAETLKLSDE IATKIQNEMTYPGQVKITVIRETRSVAYAK >gi|281305787|gb|ADEF01000021.1| GENE 53 72637 - 74202 1229 521 aa, chain - ## HITS:1 COG:XF0174 KEGG:ns NR:ns ## COG: XF0174 COG4108 # Protein_GI_number: 15836779 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Xylella fastidiosa 9a5c # 3 520 21 540 548 540 50.0 1e-153 MNEIQRRRTFAIISHPDAGKTTLTEKFLLFGGQIQVAGAVKSHKIKKTATSDWMDIEKQR GISVSTSVMEFDYQGYKINILDTPGHQDFAEDTYRTLTAVDSAIIVVDSAKGVEAQTRKL MEVCRMRQTPVIIFINKMDREGRDPFDVLDELEQELQIKVRPLSWPIGQGVRFKGVYNIY EQQLNLFTPNKQRVTEKVEVDVESEELEKKVGEREAQRLREDLELVNGVYPTFDQKSYRA AEVAPVFFGSALNNFGVQELLNCFVEIAPSPRPTLAEERLVHPEEQKFTGFIFKITANID PNHRSCIAFCKVCSGKFVRNQPYLHVRNGKTVRFSSPTQFMAQRKSTIEEAYPGDIVGLP DNNIFKIGDTLTEGEMIHFKGLPSFSPEMFKYIENDDPMKSKQLNKGIEQLMDEGVAQLF INQFNQRKVIGTVGQLQFEVIQYRLENEYNAKCRWEPVHLYKACWIESDNKEELENFKRR KYQYMAKDREGRDVFLADSQYVLSMAQQDFEHIKFHFTSEF >gi|281305787|gb|ADEF01000021.1| GENE 54 74293 - 75141 929 282 aa, chain - ## HITS:1 COG:alr4490 KEGG:ns NR:ns ## COG: alr4490 COG1091 # Protein_GI_number: 17231982 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose reductase # Organism: Nostoc sp. PCC 7120 # 3 281 5 288 294 232 44.0 6e-61 MNILITGCNGQLGREMQRLEKQMKEHQWWNTDVDELDITDQKAIEEFVTAHEIDGIVNCA AYTAVDKAEENKQLATALNAEAPAYLAAAIAKRKGWIIQISTDYVFDGTQHTPYTETDTP CPNSVYGATKLAGEVAVRQICPEHVIIRTAWLYSVHGHNFVKTMIKLGKEKSELGVIFDQ IGTPTYAGDLAQTIMTIIKKGIVPGTYHYSNEGVISWYDFTKAIHRLAGITTCHVHPLHT ADYPTAAKRPHYSVLDKTKIKTTYDIEIPYWEESLAKMIEES >gi|281305787|gb|ADEF01000021.1| GENE 55 75145 - 75693 443 182 aa, chain - ## HITS:1 COG:no KEGG:PRU_0239 NR:ns ## KEGG: PRU_0239 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 180 1 181 181 254 70.0 1e-66 MYISQQLRKKNIAEYLLYMWQIEDLIRAYDCSLARIRREYISQFDYSDEQKDEMTDWYGN LIRMMNEEGKREKGHLQINEIILQDLIDLHSQLLQSTNFPFYNSEYYKVLPFIVELRQKG AKDQHEILVCLNALYGVMLLRLQHKEITPETVHAIEEITTFIGMLSDYYIKDKNQGIQFE EE >gi|281305787|gb|ADEF01000021.1| GENE 56 75787 - 75987 172 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|261879273|ref|ZP_06005700.1| ## NR: gi|261879273|ref|ZP_06005700.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] # 1 66 172 237 237 88 68.0 1e-16 MCCGYLGIFGGAVLWWYGLTWLIDKIRGKFDTNGIIIINKIIGTIVILCSLVILIGTVFN LYTVHY Prediction of potential genes in microbial genomes Time: Sat May 28 06:45:52 2011 Seq name: gi|281305786|gb|ADEF01000022.1| Prevotella timonensis CRIS 5C-B1 contig00082, whole genome shotgun sequence Length of sequence - 937 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 158 - 231 87.1 # Ala TGC 0 0 - TRNA 592 - 668 83.3 # Ile GAT 0 0 Prediction of potential genes in microbial genomes Time: Sat May 28 06:45:56 2011 Seq name: gi|281305775|gb|ADEF01000023.1| Prevotella timonensis CRIS 5C-B1 contig00030, whole genome shotgun sequence Length of sequence - 12925 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 6, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 453 277 ## Arth_3969 hypothetical protein + Term 586 - 628 2.1 - Term 378 - 436 8.1 2 2 Op 1 . - CDS 461 - 799 323 ## gi|282880345|ref|ZP_06289057.1| hypothetical protein HMPREF9019_1003 3 2 Op 2 . - CDS 796 - 1140 228 ## gi|282880346|ref|ZP_06289058.1| conserved hypothetical protein 4 2 Op 3 . - CDS 1191 - 2003 737 ## BDI_2241 hypothetical protein - Prom 2027 - 2086 4.3 5 3 Tu 1 . + CDS 3439 - 3642 205 ## gi|282880348|ref|ZP_06289060.1| putative lipoprotein + Term 3671 - 3706 4.4 - Term 3774 - 3844 21.0 6 4 Op 1 24/0.000 - CDS 3886 - 7116 2932 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 7 4 Op 2 . - CDS 7122 - 8198 1044 ## COG0505 Carbamoylphosphate synthase small subunit 8 4 Op 3 . - CDS 8281 - 10167 1484 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase - Prom 10246 - 10305 7.6 - Term 10235 - 10287 10.0 9 5 Tu 1 . - CDS 10319 - 11116 642 ## COG1596 Periplasmic protein involved in polysaccharide export - Prom 11298 - 11357 10.7 + Prom 11287 - 11346 8.9 10 6 Tu 1 . + CDS 11388 - 12560 880 ## PRU_1514 hypothetical protein + Term 12582 - 12629 12.1 Predicted protein(s) >gi|281305775|gb|ADEF01000023.1| GENE 1 1 - 453 277 150 aa, chain + ## HITS:1 COG:no KEGG:Arth_3969 NR:ns ## KEGG: Arth_3969 # Name: not_defined # Def: hypothetical protein # Organism: Arthrobacter_FB24 # Pathway: not_defined # 1 148 14 159 163 131 45.0 9e-30 FKTVAELRKNINIVPELTGVYVLLRPNDDEPVFLEKGTGGFFKKKNPNVAFPKLGAKWVR DTSIVYIGKADISPKTGERGLRTRLKEYLDFGQGQNIGHWGGRYVWQLKDSAELVVCWKR VDSNAEQVEKQMIITFHAKHGKYPFANLRL >gi|281305775|gb|ADEF01000023.1| GENE 2 461 - 799 323 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880345|ref|ZP_06289057.1| ## NR: gi|282880345|ref|ZP_06289057.1| hypothetical protein HMPREF9019_1003 [Prevotella timonensis CRIS 5C-B1] # 1 112 1 112 112 201 100.0 1e-50 MNKDKTEKKTATGCLIIVALFFIVLAVYQYNEEKQARQVRQEIKHLTPASFRADTIIRRN RIVTGALSPTTSKDADSDSYDNPDFDDLIPGEEYDEEFVDRSEGDRELYDEP >gi|281305775|gb|ADEF01000023.1| GENE 3 796 - 1140 228 114 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880346|ref|ZP_06289058.1| ## NR: gi|282880346|ref|ZP_06289058.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 114 1 114 114 231 100.0 1e-59 MRIRGFTGCLARVLLVIAMETLTIAICVNVFGMGEGSTLSALLAVLCIILAFAIYYGEDN NSDTPKRKPRQVSQEDFNSIPHCPYCFSGNTTIDEYGNCLCFDCKAYWKEESLT >gi|281305775|gb|ADEF01000023.1| GENE 4 1191 - 2003 737 270 aa, chain - ## HITS:1 COG:no KEGG:BDI_2241 NR:ns ## KEGG: BDI_2241 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 270 1 267 267 367 67.0 1e-100 MAKITVQNTEITVLSYNDKEYISLTDMANGKQSESRAADIIKNWLRNRYTIEFLGTWEMI HNPNFNVVEFDHFRMQAGLPTFAISASEWIEKTNAIGIIVNKGRYGGTYAFKDIAFEFGT AISVTFKLYLIEEFQRLKEEEQKLLGWTAKRELSKINYRIHTDAIKSHLIPEEITSVQAS IIYAEEADVLNVAMFGMTAKQWREANPDLKGNIRDYATINELICLSNMENINAVLINDGV PQGERLMKLNQIAIQQMQILEGNGSRNLLK >gi|281305775|gb|ADEF01000023.1| GENE 5 3439 - 3642 205 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880348|ref|ZP_06289060.1| ## NR: gi|282880348|ref|ZP_06289060.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 67 12 78 78 69 100.0 8e-11 MKKLVLMFVAVAAISFASCGNKTNQAEVPADSTELSTDSVDSSMVSADSTASVDSAAQAV DTVANAQ >gi|281305775|gb|ADEF01000023.1| GENE 6 3886 - 7116 2932 1076 aa, chain - ## HITS:1 COG:SPAC22G7.06c_2 KEGG:ns NR:ns ## COG: SPAC22G7.06c_2 COG0458 # Protein_GI_number: 19113967 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Schizosaccharomyces pombe # 7 1071 1 1058 1064 1184 55.0 0 MKDENIKKVLLLGSGALKIGEAGEFDYSGSQALKALREEGIQTVLINPNIATVQTSDGVA DKIYFLPVQPYFVERVIEKEQPDGILLSFGGQTALNCGVELYKKGILEKHHVRVLGTPVQ AIIDTEDRELFVEKLNEIDVKTIKSEACENIEQARHAAQTLGYPVIIRAAYALGGLGSGF CDNEEELNKLAEKAFAFSPQVLVEKSLKGWKEIEYEVVRDRYDNCITVCNMENFDPLGIH TGESIVIAPSQTLTNSEYHKLRALSIKIIRHIGIIGECNVQYAFDPESEDYRVIEVNARL SRSSALASKATGYPLAFVAAKLGMGYGLFDLKNSVTKTTSAFFEPALDYVVCKIPRWDLS KFRGVDKELGSSMKSVGEVMAIGRNFEEAIQKGLRMIGQGMHGFVENKELEIENIDVALR EPTDKRVFIISKAMHKGYTVDQIHELTKIDKWFLQKLKHIIDIDEALKSCTSINVLDKTL LRNAKVYGFTDFQIARAVGLEDEMANMHQAMLVVRNLRKQYGILPVVKQIDTLAAEYPAQ TNYLYMTYSGVSHDISYEQDKRSIVVLGSGAYRIGSSVEFDWCGVQALHTIRREGYRSVM INYNPETVSTDYDMCDRLYFDELTFERVMDIIDLEMPHGVIVSTGGQIPNNLAMRLDEQH VPILGTAARDIDNAEDRAKFSSLLNELGINQPEWRALTSMDDINEFVERVGFPVLVRPSY VLSGAAMNVCSNKEELERFLKLAANVSEDHPVVVSKFIEYAKEIEMDAVAMNGEIMAYAI SEHIEFAGVHSGDATIQFPPQKLYVETVRRIKRISRQIAKALHINGPFNIQFMARENDIL VIECNLRASRSFPFVSKVLKLNLIDLATKIMLGANVEKPQKNLFDLDYVGIKASQFSFNR LQKADPVLGVDMSSTGEVGCLGDDTNQALLKSMLSVGHRIPQHSVLLSTGGAKQKAEMLD AAKMLKAHGYELYATGGTSQYLSDNGIENTTVYWPSEEGKEPQALSLLHEKKIDMVVNIP KDLSPRELTNGYKIRRAAIDLNVPLITNSRLASAFISAFCTLSLDDIDIKAWDEYK >gi|281305775|gb|ADEF01000023.1| GENE 7 7122 - 8198 1044 358 aa, chain - ## HITS:1 COG:SPAC22G7.06c_1 KEGG:ns NR:ns ## COG: SPAC22G7.06c_1 COG0505 # Protein_GI_number: 19113967 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Schizosaccharomyces pombe # 2 358 57 444 474 365 46.0 1e-101 MKNVTLVLSDGTRFHGKSFGYDAPVAGEVVFNTAMMGYPESLTDPSYEGQLLTLTFPLIG NYGVPPFSIQENKIPTFMESERIHVSGLIVSDYSQFYSHWNAVESLADWLKREKVPGITD IDTRQLTKVLREHGVMMGKILFDDEPDNIPDANYEGVNFVDKVSCKEIIHYNEGAGKKVV LVDCGVKANIIRCLLERGVEVIRVPWNYDYTDMDFDGLFLGNGPGDPNMCNEAVEILKKQ MSKSTKPICGICMGNQLLAKASGASIYKLKYGHRSHNQPVRLVGTNHCYITSQNHGYAVN GKTLGSDWEELFVNMNDGSNEGIRHKTNPWFSSQFHPEACSGPVDTEFMFDKFIETLK >gi|281305775|gb|ADEF01000023.1| GENE 8 8281 - 10167 1484 628 aa, chain - ## HITS:1 COG:NMB0690 KEGG:ns NR:ns ## COG: NMB0690 COG0034 # Protein_GI_number: 15676588 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Neisseria meningitidis MC58 # 36 507 17 421 514 119 26.0 1e-26 MEPLKHECGVAMIRLLKPLEYYQKKYGTWQYALNKLYLMMEKQHNRGQEGAGMACIKLGS EPGYEHMFRERAEGKNAITEIFGHVRKQFKDASAAQLSDMDYIKKELPFAGELYMGHLRY STTGKKGLSYVHPFMRRNNWRAKNLCLCGNFNMTNIDVIFEKLKQQGQCPRIYSDSYLML EYMGHRLDREVERNYANAKAQGLENMDITHYIENNVKMSNVLKTTMADFDGGYVVCGITG SGEMFSMRDPWGIRPAFYYKNEEVVVLASERPVLQTTFDLSCDDIQELQPGQALLVKRNG DCSIEKILDQCGNSPCSFERIYFSRGSDRDIYKERKKLGEQLTPAVLRAIDNDIKHTVFS FIPNTAEVAFYGLLQGFKEYVHQDKIKKIQNLGHIPTQAELEEILSESVRMEKVAWKDIK LRTFITEGNSRNDLASHVYDITYESLVPYQDNLVIIDDSIVRGTTLKESILRILDRLHPK KIVIVSSAPQIRYPDYYGIDMSSLDEFCVFRAAIQLLKDEGREEEITEIYRACLGEMQKP VEEMRNCVRDVYDTFSVEEINKKIVEMLRPKGVTTPIELVFQSIDGLHTAIPNHQGDWYF TGKYPTPNGMKLCNQAFINYYERNYQQK >gi|281305775|gb|ADEF01000023.1| GENE 9 10319 - 11116 642 265 aa, chain - ## HITS:1 COG:RSp1020 KEGG:ns NR:ns ## COG: RSp1020 COG1596 # Protein_GI_number: 17549241 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protein involved in polysaccharide export # Organism: Ralstonia solanacearum # 76 245 111 283 381 63 31.0 3e-10 MKNFLVSVITLCVILLLGSCASGKKVPYFQNIDEISLAGSKGLYDAKIMPKDMLTITVST TDPAAAAPFNLSVGSSVGGQGELSSGAGNLQGYLVDNDGNINFPVIGRLHVQGLTKTQCQ DLVHKKLLPYMAATENPIVTVRMSSYRVTVTGEVNRPGVIPVSTEKMSVIEALAQAGDLT VYGKRDNIMLIREDETGQKSMVRLNLNDANLINSPYYYLQQNDILYVEPNNVKARNSGIG PSTTLWFSFVGIVTSIASLLFNVLR >gi|281305775|gb|ADEF01000023.1| GENE 10 11388 - 12560 880 390 aa, chain + ## HITS:1 COG:no KEGG:PRU_1514 NR:ns ## KEGG: PRU_1514 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 14 390 46 392 392 351 46.0 2e-95 MKRGFITTLIVATAISSGAQTKMPTWLNNVKLSGYGMTQYQYRSQENAESNSFNIRMVRL SLDGRIKNDFYWKTQLQFNGNTNSLGSSPRIVDAFAEWQKYDCFRVKIGQFKRPISFENP MHPMAQGFMSYAQSILKLTGFNDRAGGHASNGRDIGLQVQGDFLRNSHGRNLLHYQIGVF NGQGINMKDVDQKKDIIGGMWVMPVAGLRIGAFGWTGTYARKGTWNEVDEHQQPIMTVDD KGNPVHKTQSGIRSLRQNRYAFSAEYLVNDWTFRTEYLHSTGWSFTKTEQSAATATDANI NYKAGDQADGAYALVIAPIVKSKLHAKARYDMYRPTGEWNQSKTQYEVGMNYWCTKNLLI SAEYALVNDRSLKEDSHNYSVVDIQVDYRF Prediction of potential genes in microbial genomes Time: Sat May 28 06:46:47 2011 Seq name: gi|281305710|gb|ADEF01000024.1| Prevotella timonensis CRIS 5C-B1 contig00058, whole genome shotgun sequence Length of sequence - 102109 bp Number of predicted genes - 75, with homology - 65 Number of transcription units - 37, operones - 19 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 584 - 1246 323 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 2 1 Op 2 . - CDS 1314 - 3716 1514 ## PRU_1980 ABC transporter permease 3 1 Op 3 . - CDS 3728 - 4459 500 ## BT_1007 hypothetical protein 4 1 Op 4 . - CDS 4462 - 6849 1438 ## BDI_0349 ABC transporter, permease protein, putative 5 1 Op 5 13/0.000 - CDS 6904 - 9249 1551 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 6 1 Op 6 13/0.000 - CDS 9320 - 10573 1212 ## COG0845 Membrane-fusion protein 7 1 Op 7 . - CDS 10558 - 11919 1269 ## COG1538 Outer membrane protein - Prom 12056 - 12115 4.5 + Prom 12007 - 12066 5.3 8 2 Op 1 8/0.000 + CDS 12179 - 13507 1179 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains 9 2 Op 2 . + CDS 13511 - 14650 775 ## COG5000 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation - Term 15288 - 15323 -0.8 10 3 Op 1 . - CDS 15334 - 18300 2421 ## PRU_2068 hypothetical protein 11 3 Op 2 . - CDS 18325 - 18498 129 ## - Prom 18528 - 18587 7.3 + Prom 18409 - 18468 7.1 12 4 Op 1 . + CDS 18613 - 19950 1367 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase 13 4 Op 2 . + CDS 20006 - 20551 390 ## COG0797 Lipoproteins 14 4 Op 3 . + CDS 20629 - 21486 753 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Term 21511 - 21551 6.2 - Term 21499 - 21538 9.8 15 5 Op 1 . - CDS 21590 - 22828 871 ## COG4826 Serine protease inhibitor - Prom 22852 - 22911 10.3 16 5 Op 2 . - CDS 22913 - 24124 1184 ## COG0668 Small-conductance mechanosensitive channel 17 5 Op 3 . - CDS 24167 - 25429 923 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) 18 5 Op 4 . - CDS 25426 - 25869 272 ## BVU_1111 hypothetical protein - Prom 25950 - 26009 8.7 19 6 Tu 1 . + CDS 26327 - 26545 105 ## 20 7 Op 1 . - CDS 26488 - 34077 7097 ## PRU_2040 hypothetical protein 21 7 Op 2 . - CDS 34120 - 34734 596 ## COG0632 Holliday junction resolvasome, DNA-binding subunit - Prom 34888 - 34947 7.2 + Prom 34682 - 34741 7.3 22 8 Tu 1 . + CDS 34777 - 34995 95 ## - Term 35016 - 35061 2.2 23 9 Op 1 . - CDS 35094 - 36056 999 ## COG1482 Phosphomannose isomerase 24 9 Op 2 17/0.000 - CDS 36094 - 37551 1005 ## COG0168 Trk-type K+ transport systems, membrane components 25 9 Op 3 . - CDS 37571 - 38914 1303 ## COG0569 K+ transport systems, NAD-binding component 26 9 Op 4 . - CDS 38950 - 40887 1789 ## COG1154 Deoxyxylulose-5-phosphate synthase - Prom 40957 - 41016 6.9 27 10 Op 1 . + CDS 40907 - 42382 1217 ## COG3579 Aminopeptidase C 28 10 Op 2 . + CDS 42395 - 44857 1465 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases + Term 44898 - 44961 4.4 - Term 44802 - 44836 -0.0 29 11 Tu 1 . - CDS 45008 - 45907 876 ## PRU_2042 diaminopimelate dehydrogenase (EC:1.4.1.16) - Prom 46013 - 46072 6.2 30 12 Op 1 . - CDS 46228 - 47223 705 ## PRU_2879 hypothetical protein 31 12 Op 2 . - CDS 47255 - 48076 783 ## COG3950 Predicted ATP-binding protein involved in virulence - Prom 48217 - 48276 9.9 + Prom 48148 - 48207 6.9 32 13 Tu 1 . + CDS 48282 - 48377 68 ## + Prom 49236 - 49295 5.4 33 14 Op 1 40/0.000 + CDS 49356 - 50051 555 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 34 14 Op 2 4/0.000 + CDS 50048 - 51466 974 ## COG0642 Signal transduction histidine kinase 35 14 Op 3 . + CDS 51463 - 52044 712 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 51794 - 51839 5.1 36 15 Op 1 . - CDS 52028 - 54586 1746 ## BT_3048 hypothetical protein 37 15 Op 2 . - CDS 54636 - 55988 1075 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases - Prom 56150 - 56209 8.8 - Term 56311 - 56349 4.0 38 16 Tu 1 . - CDS 56363 - 57571 1052 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 57609 - 57668 3.8 + Prom 57653 - 57712 6.4 39 17 Tu 1 . + CDS 57949 - 58116 128 ## 40 18 Tu 1 . - CDS 58052 - 60322 1521 ## BVU_0280 hypothetical protein - Prom 60493 - 60552 6.5 + Prom 60501 - 60560 11.8 41 19 Tu 1 . + CDS 60639 - 61394 396 ## Cpin_5158 transcriptional regulator, LuxR family + Term 61530 - 61564 1.2 - Term 61347 - 61383 -0.7 42 20 Tu 1 . - CDS 61409 - 62158 420 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 - Prom 62180 - 62239 8.2 + Prom 62616 - 62675 8.9 43 21 Op 1 . + CDS 62876 - 63475 620 ## PRU_0068 hypothetical protein 44 21 Op 2 . + CDS 63556 - 64788 1179 ## COG1748 Saccharopine dehydrogenase and related proteins 45 21 Op 3 . + CDS 64864 - 65892 1188 ## COG0468 RecA/RadA recombinase + Prom 65894 - 65953 5.4 46 22 Tu 1 . + CDS 66063 - 66581 459 ## BVU_0830 hypothetical protein + Prom 66749 - 66808 7.5 47 23 Tu 1 . + CDS 66929 - 67477 524 ## PRU_0688 hypothetical protein - Term 67253 - 67298 2.3 48 24 Tu 1 . - CDS 67453 - 67590 106 ## - Prom 67623 - 67682 3.9 + Prom 67581 - 67640 5.0 49 25 Tu 1 . + CDS 67694 - 69619 2218 ## COG0443 Molecular chaperone + Term 69648 - 69697 6.4 - Term 69642 - 69680 -0.6 50 26 Tu 1 . - CDS 69701 - 69889 101 ## - Prom 70137 - 70196 4.8 51 27 Tu 1 . + CDS 69985 - 70500 492 ## Plut_0901 hypothetical protein + Term 70598 - 70636 4.6 + Prom 70562 - 70621 7.5 52 28 Op 1 . + CDS 70678 - 70884 236 ## PG1203 transcriptional regulator, putative 53 28 Op 2 . + CDS 70892 - 71839 800 ## COG2184 Protein involved in cell division 54 28 Op 3 . + CDS 71848 - 72006 68 ## 55 28 Op 4 . + CDS 72011 - 73198 758 ## BDI_0247 hypothetical protein 56 28 Op 5 . + CDS 73201 - 74877 678 ## COG0433 Predicted ATPase + Term 75046 - 75099 12.3 57 29 Tu 1 . - CDS 75064 - 75297 98 ## - Prom 75345 - 75404 2.2 - Term 75719 - 75759 1.1 58 30 Op 1 . - CDS 75829 - 76083 301 ## PRU_0968 hypothetical protein - Term 76119 - 76150 -0.5 59 30 Op 2 . - CDS 76161 - 76346 146 ## gi|282880404|ref|ZP_06289115.1| conserved hypothetical protein - Prom 76367 - 76426 1.6 60 31 Op 1 . - CDS 76457 - 77677 1115 ## COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) - Prom 77700 - 77759 2.1 61 31 Op 2 . - CDS 77774 - 78427 374 ## BVU_2341 hypothetical protein 62 31 Op 3 . - CDS 78430 - 79533 1000 ## BF0928 hypothetical protein - Prom 79553 - 79612 9.3 + Prom 79364 - 79423 5.7 63 32 Tu 1 . + CDS 79490 - 79645 90 ## 64 33 Tu 1 . - CDS 79664 - 81052 945 ## COG0534 Na+-driven multidrug efflux pump - Prom 81199 - 81258 5.5 - Term 82301 - 82341 8.3 65 34 Op 1 . - CDS 82368 - 83030 647 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 66 34 Op 2 . - CDS 83041 - 84585 1602 ## COG0423 Glycyl-tRNA synthetase (class II) - Prom 84663 - 84722 4.4 - Term 84752 - 84799 13.0 67 35 Op 1 . - CDS 84836 - 86605 1407 ## BVU_1153 hypothetical protein 68 35 Op 2 . - CDS 86625 - 89711 2356 ## BF3971 hypothetical protein 69 35 Op 3 . - CDS 89716 - 92289 2062 ## PGN_1976 hypothetical protein - Prom 92435 - 92494 6.1 + Prom 92424 - 92483 12.8 70 36 Op 1 . + CDS 92726 - 92968 89 ## gi|282878743|ref|ZP_06287511.1| YaaA family protein 71 36 Op 2 . + CDS 93003 - 93488 365 ## COG3022 Uncharacterized protein conserved in bacteria 72 37 Op 1 . - CDS 93503 - 94429 574 ## BT_3281 hypothetical protein 73 37 Op 2 . - CDS 94435 - 95871 867 ## BT_3280 hypothetical protein 74 37 Op 3 . - CDS 95885 - 99163 1762 ## BT_3279 hypothetical protein - Term 99177 - 99225 2.1 75 37 Op 4 . - CDS 99243 - 101612 1494 ## Coch_0557 hypothetical protein - Prom 101726 - 101785 6.0 Predicted protein(s) >gi|281305710|gb|ADEF01000024.1| GENE 1 584 - 1246 323 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 219 1 218 245 129 34 8e-29 MIKVENLSKSFRTEEVETIALNNVSFQVEDKEFVAIMGPSGCGKSTLLNILGLLDNPTGG KYWLGDKEVSALKEKDRTDVRKGEIGFVFQSFNLIDELNVEENIELPLTYLGMSKAERKQ KVKDIMKRMGISHRAKHFPHQLSGGQQQRVAIARAVVFGPKLILADEPTGNLDSKNGAEV MGLLTELNREGTTIVMVTHNEHDASIAHRIVRLFDGQIVG >gi|281305710|gb|ADEF01000024.1| GENE 2 1314 - 3716 1514 800 aa, chain - ## HITS:1 COG:no KEGG:PRU_1980 NR:ns ## KEGG: PRU_1980 # Name: not_defined # Def: ABC transporter permease # Organism: P.ruminicola # Pathway: not_defined # 14 800 28 806 806 575 40.0 1e-162 MLHLIQQSCRMAWRNLFRRRQHNVAKILCLALGLSVSAVIIAEIYYEQTFDQSYPDYDRI CRVTEGFKMKAQEFTESSNTSGGVVPMMKRTIPQVELATRTNPIVTDGEVETDDKVRVRA DVYFADSCFFRMFPARILEGDADRALTEPFCCVVNRSTAERLGGNVVGRHIQSKEMSGLK LTIVGVYEDYPHNSTFHNYDVIGSMKTQKNFSYDGQDNLVGNDRYSSFVRLRKNVSPDSL KPLIHRMIQTHYPVKELQQSGTWLTYKLTPISRYYTEADNVRQMFWILSLLAIILLSASI LNYVLIVVGNLVSRAREMAVRKCYGAGREAVYSITFSEVCLHLVLALMLGAALLWACHGT IEQLLSAPLSVLVFNRGAWILLLIALMVLFVGGIVPGWLYNRMPVTIAFHGYVEARRRWK VALLGLEFAMVSFLLGLLFIVSMQYRHTVGFDLGYQCAGLASVNISALQPDERQTAYDEV GRMSGVRQVSACNTFPFYGMSGNNVTVPGEESQLFNIADLFTVADHYFDMLQIPIVAGRV FASGSDSLKQVMVSQDFASMMKKLRGWDDVVGRKVIISEHSGNENKDLLTIVGVYRDIHL GSAENNGRDRPSVIFYGRAANWMNNYLLIQLDDFSAEKLTDIQTRLQRFFPGKTVMVESV ENLKNMQYVATRNFRNGVMTVGIVVLFIALMGLIGYVSDEVNRRHKEIAIRKVNGACVGD VMRIFQLNILRTAIPAVLIGAVGAYWVAAQWLQLYDNRIALTVWPFLVTIVLVLLIIVAV VAINCWRVANSNPVEYLKQE >gi|281305710|gb|ADEF01000024.1| GENE 3 3728 - 4459 500 243 aa, chain - ## HITS:1 COG:no KEGG:BT_1007 NR:ns ## KEGG: BT_1007 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 42 226 43 248 263 96 32.0 9e-19 MKKKIFFCMTAVLVLLSSCIVVQANSYEVANDESRAYPLRGFSAIEVSGAIHVEFVQSNN QSYRVKAVGSPNMLPKLQMEVRNRVLTIKQKSDPGIHSGNHHLTVYVQAPNLQSVTASGA CDVLIQSLNASAVRLEACGSSDVTVSQLTANSLEVRLQGSSDARLAGKVSKAIYTCSGSS DVRAYDLKAKDVSATCSGSSDVYCFATRSVSAKASGSSDIRIKGNPVQRQLDKSGSSDIR ILH >gi|281305710|gb|ADEF01000024.1| GENE 4 4462 - 6849 1438 795 aa, chain - ## HITS:1 COG:no KEGG:BDI_0349 NR:ns ## KEGG: BDI_0349 # Name: not_defined # Def: ABC transporter, permease protein, putative # Organism: P.distasonis # Pathway: not_defined # 1 794 1 773 775 547 41.0 1e-154 MKQLFNLKSYFTFLSRNKVYTAINVFGLSISLMFVLLIGVYTWQEKSVDRQHSKGDRIYA MGLDFYEDHEKELGFHHAILSRFRKNYPEIENTCGFVVSDMRLQKGDEFYKATVLETDSA FFSMFDFKLLQGDRQTCLNDRNNVVVTKRFANKWFGTEEVLGREITWNDSIRYHVTGVVE DFDNTIINKNVEMIIDFSWEWYHNMANMDEYFPKTVNFAGASIFLQVRKGAKMMGREKEF GKFIHSFWPDFDKAPFYCRPFLVPLNKIYFSGYDNYNDNLRTGNSRLVNLLFIVGLVVLL FAIMNYINLTVAQSGYRAREMAARRLFGAKRKHIILRLMIESSTLCFISLLVAVSLALAF APMTGRLLSTTMDMRVLATPAVIGLLLAFTLLVGFISGIIPAYVLSKAKPIEVVRGTFRH RTKMVLGRVFIVVQNIITIVMLACATIMSLQMLHLVNAPLGFNTKNLICLYQGDAFSSTD FPVFLNKVKQVSGVKLVTCSDGTPQDGGNNNTVTEKDKVYSFQMLIGDPNYLKVYGLSLK HDNHVGHRPVIYLNDQAVGDLKMKPTDSHMSDFYKQTKFFLFPDDAAFGGILNDFRLRNI TETEVYPLLLCIKDKVENPWNVTIQFEGNPAKTYKEIQRIYKEVFHEELNQAHPFVDKSI ESVFESELRLSKIIALFAFIAIVISLLGLVAMSTYFIQQRSKEIAIRKVFGSTSNRIRRD LIRTFLQYVAVAFVISVPVIWYTINEWISQYSYRIVWWPWIIVAGILVLLISFCAVAIQS YMASNENPVKNIKQE >gi|281305710|gb|ADEF01000024.1| GENE 5 6904 - 9249 1551 781 aa, chain - ## HITS:1 COG:ybjZ_2 KEGG:ns NR:ns ## COG: ybjZ_2 COG0577 # Protein_GI_number: 16128847 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Escherichia coli K12 # 121 404 123 392 395 65 23.0 3e-10 MKQLFNLKSYFTFLSRNKVYTAINVLGLSISFAFVILIGLYYQHETGIDKSIANVDRLYL LGCDFSSDKMSGTSREIIRVLQKQLPQIEKGCAFHINREQHVTTADEDNVKVTMMYTDST FYSMFNQPLAEGDAATALNELTDVVISRKLAQMLFRNGNAMGKVLTVENRKVYVRGIYEN MNGTSFPDCDIIGRYELLRERIPWLFKIDGNFGSPDVVLSLRPGTDIGALENNVNRILPK IYKENFKIDCKFRLIPFSESYFSEYSSNVCQRGKSGLVYLIFIIGIIILVFSVMNYINLT VALSGNRSKEMATRRLLGSRKSDILWRLVIESVCLCCCSVVLSVLLAWASIPYTCQLLDT HITIAELFSPINLLLLVGIVLAVGILAGVLPAVIQSRVKPIDVVRGTFRRQTKMLFSKVF IVVQNAITIIFIAIALIGSRQIRHLINAPLGYNTQGVMEIGVPQDARKANLFKKNLQQLT PVKKVSVCLCSPLLGGFNQMAYIGKKAVRCQRFYADKDYLPLLGIEVKKQFAQGDSAKLF VSPNFHSVMQLKPDERTFRYNETYEREQINGILNDFHLYTIDMDNADDQVTVVYLFDQIT HDDFTNNVLIKVEGDEQEAYRLVQETYKKVYHEDLAQESPYLNQKIAEVYKEQTRIVRIL TIFSFLAVLISLLGLVAMSTYFIQQRSKEIAIRKVFGSTSNRIRRDLIRTFLQYVGVAFI ISVPVIWYFAGEWISQYSYRIVWWPWIIVAGILVLLISFCAVAVQSYMASNENPVKNIKQ E >gi|281305710|gb|ADEF01000024.1| GENE 6 9320 - 10573 1212 417 aa, chain - ## HITS:1 COG:YPO1498 KEGG:ns NR:ns ## COG: YPO1498 COG0845 # Protein_GI_number: 16121771 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Yersinia pestis # 57 414 55 417 420 127 25.0 6e-29 MDIEIKQKKFWIPRKYWTWIGGGVFVVAALLWLALGNFSSTLKVDSRGLSIGDVKQAQFD DYVSVDGNVVPIQVVQISPEEGGVVMERVAEEGSHVRKGDVIVRLNNSNLDLEILNAESE LAEKQNMLRNTQITMEQDRLNNQNEAAQLSMDVQAKKRTYNHQTALQQEQLNSREEYLKA KEDYELAVKKNELIAQRLKKDAQLRRAQMEQMNDNLSSMRRNVELVRQRKEHLNVRSQID GEVGQLNIELGQSISPGQKIGVINDLSDYKVEAQVDEHYIDRVHQGLTATFEQNGKHYSL TVRKVYPEVKDGRFKIDFVFSGKRPTNIRTGQTYYVDLQLGESKRAVLIPKGTFYSVTGG QWIFVLDKDGKKAYRRNIRIGRQNPQYYEVLEGLQPGERVIVSGYESYKDNEILVLE >gi|281305710|gb|ADEF01000024.1| GENE 7 10558 - 11919 1269 453 aa, chain - ## HITS:1 COG:PA4592 KEGG:ns NR:ns ## COG: PA4592 COG1538 # Protein_GI_number: 15599788 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Pseudomonas aeruginosa # 128 436 171 477 493 70 25.0 7e-12 MFLAQHWQLFKRMRTAITIILLDLAALPLLAQETWTMNRCIQYAVEHNNGVRKQRLEVRQ SKVDERTARLDLLPTVSAQTTAQYAWGRNINPETNTYNTITTFNNYYSIGAEMPLFDGGR TWNAFQQARLAHAKSMTVLQKTADDKAIAVMAKFVEAVYSQQSIGLARRKLADSQALLRK TRAMFDLGEKSRPDVAQMESQVAEDDYNLLHQQNAASLALMALKAEMNFPVGDSIALDTL LTASLSVADDAGSLYAAFQAESPEVKTAAFNVKNARYHYLIQRGQLLPVLALGGGINTNY YRNLSQGSSKTDNFGKQFNNNMGEYVYLSLSIPIFMPSRWRAARRAKAEWEASKLDLEDA RRKLHDDIAQAVLDRDGYSRELIKMERKTAADSIAWHLASRKYEEGMLSTFDLHTAAQTL LDSRIKLLQMQLMLEMKQRLVNYYKGIRTWTLK >gi|281305710|gb|ADEF01000024.1| GENE 8 12179 - 13507 1179 442 aa, chain + ## HITS:1 COG:hydG KEGG:ns NR:ns ## COG: hydG COG2204 # Protein_GI_number: 16131834 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 6 439 8 441 441 296 40.0 4e-80 MKQGSILIVDDNRNILTTVKMLIENVFEHVAAIAKPENIPTRLREDRPDVVLLDMNFRSG INNGNEGLFWLREIKKLSPHTQVVLFTAYADIELAVTGIKEGATDFVVKPFDNAKLIDTL TNAYRKTKKNSQNATTHEGEMYWGVSPAMQDLRLMVEKVAATDANILITGENGTGKEVLA KEIHRLSKRHGHRMMPIDMGAITETLFESELFGHTKGAFTDAKTDKPGKFELAEGGTLFL DEIGNLSYALQAKLLTALQRRSIVRVGGSEQIPIDVRLICATNRDLQAMVTNGEFREDLL YRVNTIHLHLPPLRERREDITALAGIFLIRYATMYNKPETKFSASAMTKLEEQPWYGNIR ELQHAMEKAVILCSGTTIAEDDIESGSTRQEKPIEDVRTLDEMERRLIEKTIRECDGNLS QVAFRLGISRQTLYNKIKRYGL >gi|281305710|gb|ADEF01000024.1| GENE 9 13511 - 14650 775 379 aa, chain + ## HITS:1 COG:CC1742 KEGG:ns NR:ns ## COG: CC1742 COG5000 # Protein_GI_number: 16125986 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation # Organism: Caulobacter vibrioides # 60 364 341 684 716 98 25.0 2e-20 MNVIVIILCLALLTALVAYLQLWRRYRHDLGKVTFMFNAIDIGDYTFQFPVNKRYGSELL LNESLNRVKEILQHARDEQIEREKYFELILDSVDTGILVVDVERGIVLRSNRAALNLLQV ETITHINQIKEKMAGFSLRETHTTLKSRRVRIIGFSDIKGELANQEIDSWVKLIRVLTHE IMNTVTPIISLSDTLLQNSQGEQRQGLQVISRTSKELMRFVENYRKFTHVPTPTPTLFYV RPFLERMVNLIRPMLKPGVNVSYEVDPGDLLVYADESLVSRVVNNLLKNASEAIGEEGQI TLRAYTNAQESVIIDITDNGAMIPDDVANHIFVPFFTTKPQGSGIGLSISRQIMQACNGS IDLVTDKTDGLTTFRLTFY >gi|281305710|gb|ADEF01000024.1| GENE 10 15334 - 18300 2421 988 aa, chain - ## HITS:1 COG:no KEGG:PRU_2068 NR:ns ## KEGG: PRU_2068 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 5 984 7 995 996 1540 73.0 0 MNDSVPSQWRNFLLKDVTFVNLMMRRIYNVLIVANPYDAFMLEDDGRVEEKIFNEYMELG LRYPPTFTQVSTTEEATRILQSMPIDLVICMPGTADNDAFTVARNIKDAFPAIHCIVLTP FSHGITRRMENEDLSIFDYVFCWLGNTNLIMSIIKLMEDKMNLEHDIIEGGVQMILLVED SIRFYSSILPNLYSYILVQNKHLSSEALNRHAATLRMRGRPKVVLARTYEEAMDYYNRFS DNILGVISDARYPKGGVKDPEAGLKLLREIRKRNPYLPLVVESSESSNREKTEREGFRFV DKNSKMMGIDLRHIFEEHMGFGDFIFRDPLTRQEIMRVHSLKELQDNIFKIPDDSFRFHV SRNHMSRWLSARSIFPISEFLKKITWDKLQDLQAHRQIIFDAILQYRKMKNIGVVAVFDR LKFDQYAHFARIGEGSLGGKGRGLAFLDHIIKMHPDFNQYEGVKVQIPKTLVLCTDLFDQ FMDENNLYDVALSDATDEEILHCFLKAKLPERLRDDFITFFDATKSPIAIRSSSLLEDSH YQPFAGIYSTYMIPALDDKQLMLQMLACAIKGVYASVFYHDSKAYMTATRNLIDQEKMAV ILQEVVGKQYDTHYYPKISGVLRSLNYYPIGNEKAEEGIASLALGLGKYIVDGGQTLCVS PYHPHHVLQTSELEKALRETQTQFYALDTAHVGQDFQVDDGFNILKLEVKSAEKDGSLQY IASTYDPYNQIMRDGLYDGGRKVISFCNVLQHDVFPLAPIMQMAMNYGAESMRCPVEIEF ACDINADRTGEFYLLQIRPIVDSKQMLDEDIVAIADERCLLRSHNSLGHGIMDDVCDVVY VKTNASFTAKNNPAIVGEIEKLNEQFLSRGQGYVLIGPGRWGSSDPWLGIPVKWPQISGA KVIVETTLNNYRIDPSQGTHFFQNLTSFGVGYFTIDEVGGSGLFRQDVLDAMPAVEETTY VRHVRFDAPLRILLDGQKQEGVVLLSET >gi|281305710|gb|ADEF01000024.1| GENE 11 18325 - 18498 129 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFINVKTHELTPYYISLGVKDESSLDICEYTLFFLHLSCRYCPIKDGPLFWKPLSFG >gi|281305710|gb|ADEF01000024.1| GENE 12 18613 - 19950 1367 445 aa, chain + ## HITS:1 COG:PA4588 KEGG:ns NR:ns ## COG: PA4588 COG0334 # Protein_GI_number: 15599784 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Pseudomonas aeruginosa # 3 445 5 445 445 539 60.0 1e-153 MEIDKIMQDLEKKHPGESEYLQAVKEVLISVKDVYNEHPEFEKAKIIERIVEPERIIMFR VPWVDDQGEVHVNIGYRVQFNGAIGPYKGGLRFHPSVNLSIMKFLGFEQTFKNALTTLPM GGAKGGSDFSIRGRSDAEVMRFCQSFMSELYKYIGPSTDVPAGDIGVGGREIGYLFGQYK KLVGRWEGVLTGKGLQYGGSRIRPEATGFGALYFVNQMLQTRNIDIKGKTVAISGFGNVA WGAALKATELGGKVITISGPDGYIYDPNGISGEKIAYMLELRASGNDVCKPYADKFKGSE FHEGKKPWEQKADIYLTCATQNELNGEDADKILAHKPLCVAEVSNMGCTAEAVDKFVAVQ QLFAPGKAVNAGGVATSGLEMTQNSIRLTWSEAEVDEKLHYIMHSIHEQCVKYGTESNGY INYVKGANVAGFMKVAQAMLEQGVV >gi|281305710|gb|ADEF01000024.1| GENE 13 20006 - 20551 390 181 aa, chain + ## HITS:1 COG:PA4485 KEGG:ns NR:ns ## COG: PA4485 COG0797 # Protein_GI_number: 15599681 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipoproteins # Organism: Pseudomonas aeruginosa # 14 105 34 125 125 100 51.0 1e-21 MVSFTFLMAQTQKGKATFYSKQSTGARTASGERVHHDSMTCAHRTYPFGTLLRVTNPRNK KDVIVKVTDRGPHVKGRIIDLSYRAAKEIGIIGKGVAMVTVERIDSADIIHIPYRSKEKR ELPELEFDITSGEDNFIDAWTRQQSINASKTKLQLTKQRKQSATEDKKKQKQPSNTKTKK K >gi|281305710|gb|ADEF01000024.1| GENE 14 20629 - 21486 753 285 aa, chain + ## HITS:1 COG:BMEI1958 KEGG:ns NR:ns ## COG: BMEI1958 COG0623 # Protein_GI_number: 17988241 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Brucella melitensis # 5 260 4 257 272 124 32.0 2e-28 MSNNLLSGKRGIVFGALNEQSIAWKVAERAVEEGAKIILSNTPVAVRMGTVSALSEKLHC EVIPADATNVEDLENVFKQSVEILGGKIDFVLHSIGMSPNVRKHRTYDDLDYKMLDTTLD VSAISFHKMIQCAKKLDAINEYGSIVALTYVAAQRTFYGYNDMADAKALLESIARSFGYI YGREKHVRINTISQSPTLTTAGQGIKGMDKLFDFANRMSPLGNASADECANYCIVMFSDL TKKVTMQNLYHDGGFSNVGMSLRAMATYEKGLDEYKDENGKIIYG >gi|281305710|gb|ADEF01000024.1| GENE 15 21590 - 22828 871 412 aa, chain - ## HITS:1 COG:all0778 KEGG:ns NR:ns ## COG: all0778 COG4826 # Protein_GI_number: 17228273 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Serine protease inhibitor # Organism: Nostoc sp. PCC 7120 # 48 407 7 368 374 204 33.0 2e-52 MKHFFPLIGVCCLSVGMLTSCSEDEPVAPDIKYNPGTIKLTTAQQAQVENSNEFAWKFFK EVSKGEQEDVFVSPLSVTYALGMLANGAVGDTQKEILEGLEFRSGKVDDINSLCHQLMIE SPKLDKSTKVSMANAVVANKNKPLQPDFKNVVEKQYQALVTNQDFSSPATLSFINLWASE LTHGMVPQLLDRVNPDAVTYLLNALYFKGIWYRQFDKKRTQQESFTQTDGKKLTVKMMHQ KERFFAAENDNYQTVVLPYGNGSYEMVVLLPREGKDLSSLLQTMDAKKWKDNLKNTYSSK VDLKLPRFTSAYTRELNDVLKLLGMNIMFDRGKADLTKMSVAKAFVSKVLQKAKIEVDED GSKAAAVTVVETLDAATPPSRPIMFHANRPFMYAIAEHSTGTIFFMGTYQGK >gi|281305710|gb|ADEF01000024.1| GENE 16 22913 - 24124 1184 403 aa, chain - ## HITS:1 COG:VC0265 KEGG:ns NR:ns ## COG: VC0265 COG0668 # Protein_GI_number: 15640294 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Vibrio cholerae # 4 390 5 400 412 213 31.0 5e-55 MWDITETMEQVRIVVEKLIQMCGITGVAVPVVRYVSLSLAAIFFSWLSYIVAKKLLIPII NRLTARTKATWDDVLFNRDVLLKVCAIVPAIVIYKLLPLVFYEAPFVQEMLNRLTSIYIT VASVQLAIAIINSFRHLETTESSSRQQYMQSFCGVLKIVAIFIGVIVVVALVIDKSPMKL FAGLGATSAVLMLVFKDTIEGLVAGIRLTSNDMIRRGDWITVPSTTVDGEVMEMTLTTVK VQNFDNTIVTVSPKTLVDGSFQNWKGMQESDGRRVKRLVYFDFLSIKPATQELKDMCQEK GFLTAQEMKGDLTNLGLYRKYMENWLKQSPEVNTELTCMVRQLEATNTGLPIEFYFFLSN KEWIVYEHNLAEIMEWAYTMASEFGLHIYERSSVMPQVKQLLG >gi|281305710|gb|ADEF01000024.1| GENE 17 24167 - 25429 923 420 aa, chain - ## HITS:1 COG:Cgl2643 KEGG:ns NR:ns ## COG: Cgl2643 COG2027 # Protein_GI_number: 19553893 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Corynebacterium glutamicum # 13 399 32 407 427 106 27.0 8e-23 MKIIKNLLCLAVLGLWQPAPAQTEITHQITPTDSLTLISVPVDTASVVAPTITWQQKVQI RLEQLLQSKLLETSQLGLAVYDLTADSVLYKYNERQHLRPASTMKLITAITALDQLGGDY ELKTELYYTGSIENRTLKGDIYCVGGFDPLFDKEDMQAFATCVQELGIDTIRGTLYADKG MKDLNLLGEGWCWDDDNPVLSPLLYRRKDHFMAELERRLREAGIQVEAFSTTGSCPANAQ RLCLRTHSIDQVLLPMVKKSDNLCAEALFYQLPGGERQQRRTAKDASNVVKRLIKKVGLN PSTYKIADGSGLSLYNYLSAELLIEFLKYAHRQPRIYNHLLPTLPVAGVDGTLSDRMRDA DTRGKVWAKTGTVTGVSSLAGYCQAPNGHLLCFAIINQGVMHGKNAHRFQDKVCEALCLP >gi|281305710|gb|ADEF01000024.1| GENE 18 25426 - 25869 272 147 aa, chain - ## HITS:1 COG:no KEGG:BVU_1111 NR:ns ## KEGG: BVU_1111 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 134 1 129 137 67 29.0 2e-10 MSQRTFHHRLTLGSLCGLVLFSLLVIYLFWIKQALLGLLVVIVIVGMIERILHTTYTFIR TKPIDRDEEMEFLLINRGRFSTKQQIALCDVVKCVPMRNNFGLSHYLLIKYGADRLIAVQ PQQEQAFMEELMKRQQAEDASFAHKHS >gi|281305710|gb|ADEF01000024.1| GENE 19 26327 - 26545 105 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQKKNIKILGNSPNKLTYKQLPTFAISRVFTHERTCLRKYASYERVFVKKIHIFYRVRLN FKLMPKSCVVVG >gi|281305710|gb|ADEF01000024.1| GENE 20 26488 - 34077 7097 2529 aa, chain - ## HITS:1 COG:no KEGG:PRU_2040 NR:ns ## KEGG: PRU_2040 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 150 1922 4 1774 2210 2449 68.0 0 MELRRRIYSLLLVLLVMSMAGYAFTLPYWQGRGVQRVQQQSPQKPQKRNKKDTVQVKVQP EIEDETHIPDSLLHPRWKIQRTTPVIFDDLEESPLDLKRPRNLNQDVVYNDTLNRYIFGS KIGNSWVNAPIMMTPQEYRKWSEQQLFKQYFRTKNAEVFEKKGKEKFDFTDMHFDLGPAE KIFGPGGVRIKTQGTAELKFGGTIKKIDNPSLPIRNRKMTTMNFDEKINLNVNGRVGDKV NMNLNYNTDATFDFDAQNMKLKYDGKEDEIIKLVEAGNVSFPSNSSLIKGASSLFGLRTD MQFGKLKLQMVASQKKSSDKTVSSKGGKQFTPFEINVANYEENRHFFLSQYFRKQYDENM KSLPNITSGVKINRMEIWVTNNSGVTTNARNIIAFTDLGENEKVSNPLWNTTMQKVPSNQ ANNVYSTIVNTYGIVRNIDQANSVLTSAGLVGGVDYEKLERARLLNPSEYKVNTALGYVS LKTGLQTDQVLAVAYEYTYGGTTFQVGEFASDVTDVNAALFVKSLKNTSNNPQQGNWDLM MKNVYELGNSIEREKFRLDVKYQSDTAGVYLTYIPEAQVKNQPIIRLLGADRLDNNNKVH SNGYFDYVEGYTVSDGRVFFPKVEPFGSFILNYLRDKGVQHPEKYAFTELYDSTKTVAKQ IAEKNKYVLMGQYRGSAANVISLGAYNVPQGSVVVTAGGVRLTENADYSVDYAAGEVTIL NKSILDAGTNVNVSLESNTDFAQERKTMFGLNWEYDFSKDFQLSGTVQHLSEQALTNKVN MGAEPLNNTLWGVNLNWKKESQWLTSLLDKIPFLHLTQPSHISFNAEFAQLIAGQSHGTQ DNASYLDDFENTTTKIDVSTPTSWVMSSVPSMFPEHSDKTTLRSGFNRSLLAWYTIDPLF TRRSSSLTPSHIKSDLEQLSNHYVREVYVRELYPNRDQSSYSGATATIPILNLAYYPAER GPYNFNPDLTTDGFLKHPQEKWGGMMRKLDYSDFEASNIEYIEFWMLDPFIYTRRDGTAH QYGGDFYINLGEVSEDILHDGKKFYESGLPVDGSQAFTTTQWGKVPTQPSVTYAFATSKG ARALQDLGFNGLTNEEEKNFAAYQDFLRQIQGKVNPAVFEAILKDVANDDYHYFRGRDYD EMQASILRRYKYINNPQGNSPDTENRSERYDTSYKSMPDVEDINQDYTLNEYEKYFQYHI SIRPEDLVVGQNHIVDKREAVAPLRNKKTNERVTWYQFRIPVRDFERRFGSISDFTSIRF MRMFLTGFEKPIVLRFGSLDLVRGDWRIYQQQLDPSSAQTGTMSVSSVNIEENNDKSPVN YVLPPGIVRAQDPTQRQLVEANEQALDLVVHHLATGESKAVYKNTSVDLRQYKRMQMFVH ANAMEQNTTNLQDNQLAVFVRLGNDYKSNYYEYEIPLRLTEPGVYDRYSLASVRKVWPEE NMLDIPLTVFTEVKKERNKAKSQGQASYNRVFTSYDAERPNNKVSVMGNPTLGEVKTMMI GVRNKSGEVKSGEVWVNELRLLEYNNEGGWAAQGNLNVQLSDFGTFNVQGRYMSEGFGGL EEGVDQRSKDDYQNYSVTANLELGKFFPDKAKVSAPLYYSRQEEQVSPKYNPLDTDMRLQ DALDAMGSQQERDSIQSIAVTKTTNTNFSLSNVRVGIQTKRHPMPYDPANFSFSYSHAHR YSSGKTTVYEKEDNWMGSLSYNWSPVYKPLEPFKFIKSRSKWYDILKRFGLNWLPQSVAF NTDMSRNYYELQERDMQDLGGSQLPLTFNQQFMWNRDFTLRWDLTKNIHMNFQSATHAEI EEPYTPVNKDLFPDRYSAWKDSVRTSIRNLGTPLDYQQRFSLSYQLPLNLIPIFDWVRAD ANYAANYTWVRGTMLEDGTSLGNTVTTNRNMNLNGNFDLQRLYNHIPFLKKTNDRFNKEP QRRQPRGRNSRMVKQDKKQSTTHKATVRDAQAEAQKRALPKNQKGFQQEIVLLPDTFITV KHGKQTKRLIVSAKAENGKSYPLRYQKIDNNTIRIKNKVDSALHLKITVAAKEPLENKGW YKAAQSVARLMMMVRSVGLSYRNDYALALPGFMPIVGDAFGQNRTPSALSPGLDFAFGFV DDGYIERARDYHWLLMSDSIATPATSNRTEDLQLRMTLEPVRNFKIDLHASRTKTMGKSV QYMYEGNPTVLSGNFTMTTISLRSAFEGMGNANNGFYSQSFVDFCQSLEGFRHRVEAQYQ GATYPRGTSLAGETYNAANGGVNKYGSDVMVPAFLNTYTSMGGHSLDLFPAITRLLPNWT IRYSGLGKLPWFQDVFKSVTLNHAYKSVFAIGSFSSFSTFQEYMNGLGFITDPTTAAPIP SSIYNISMVSINEAFSPLLGVDVTLHNNLTAKLEYRSTRVLSLSTTSVQINEAISRDWVL GLAYRINDLHLFDSGRNRRMSRNRNKQQQAQTTTSTSNSTTSNRGLNLRLDCSYRRQASI SRDIATMTSMATGGNTAFKFQFSADYNLSKLMTMTMYYDQQVNNPLLSSNSYPTTTHDFG ISLKFSLTR >gi|281305710|gb|ADEF01000024.1| GENE 21 34120 - 34734 596 204 aa, chain - ## HITS:1 COG:XF1904 KEGG:ns NR:ns ## COG: XF1904 COG0632 # Protein_GI_number: 15838502 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Xylella fastidiosa 9a5c # 1 200 1 189 194 102 34.0 4e-22 MIEYIRGELTDLTPAQAVLEAAGIGYSLNISLNTYSAIQGKKEVKLYVHESLVTGGRDDN FTFYGFYSKQERDLYRMLITVSGVGANTARMILSAISPAELCNVIANGDERMLKSVKGIG LKTAQRIIVDLKDKIVSSGIATELHVSDQPQNMVHSGIRDEAVSALTMLGFSPAPSAKVV ESILKESDSMPVEQVVKLALSRIK >gi|281305710|gb|ADEF01000024.1| GENE 22 34777 - 34995 95 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MARYCSYGQKVQKEKVKIRCTKIQWLHRFLLVSQHLIIQYINSYPQKQSTNLKLMIYVLS IYSMLQSSTVVT >gi|281305710|gb|ADEF01000024.1| GENE 23 35094 - 36056 999 320 aa, chain - ## HITS:1 COG:CAC2918 KEGG:ns NR:ns ## COG: CAC2918 COG1482 # Protein_GI_number: 15896171 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Clostridium acetobutylicum # 1 320 1 310 326 195 36.0 1e-49 MKPLKFNAFLKQTIWGGNKIIPFKHLDSHLENVGESWEISGVKDYQTIVSEGEYAGRALN EVVEELKGKLIGESNYEQFGNEFPLLIKFIDARQDLSIQVHPTDEIAKKQGKSRGKTEMW YIMDSDKDAHLRSGLKKKITPAEYKEMVENDTILDAIADYSVKEGDCFFLPAGRIHSIGK GCFLAEIQQTSDVTYRIYDFKRKDKNGNYRELHTDLAAECINYEVLNDYRTVYTSQKNQG VSLVHCPYFHTAVYDLDEPMTLDYSELDSFVILIGVKGEGTIVDNEGNETSLRAGETILI PATTNELKVNGTVKFLETYV >gi|281305710|gb|ADEF01000024.1| GENE 24 36094 - 37551 1005 485 aa, chain - ## HITS:1 COG:VC0042 KEGG:ns NR:ns ## COG: VC0042 COG0168 # Protein_GI_number: 15640074 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Vibrio cholerae # 1 483 1 480 481 295 37.0 2e-79 MINLRSVYKVIGSLLFIEAFILFVCFVMAFSYGEDDAMAFIISVAITLFVAFILKYLGRA SNNSLSRRDAYLVVTLSWIVFSLFGTLPFTFSGYIPNFTDAYFENMSGFTTTGATILDNV EALPHALLFWRSITQWIGGLGIVFFTVALLPSMVGGSVKVFAAEATGPIKTKLAPKLSTS AKWILSVYLVLTVACMGSYMFFGMNWFDALNYAMTSTATGGFSTHNSSTEFFHSPAIEYM CTLFCFLSGVNFTLLYVSVAKLRIRDLFRNSEFKFYIFLISIFSLFIMLELIFRRGYDVE PAFRSGIFQVVSFITTTGLFNDDAGQWPHVTWVILAICMFMGACSGSTSGGVKCIRGVML LKTIRNEFRQILHPNAVLPLKIDKTNIPYQKRGTLLAFVTMYLILCVLASFALMVAHIDS TNSITIILSCLGNVGPTLGLEIGPTMSWNILPNYIKWICALMMLVGRLEIFSVLVILTPE FWKKN >gi|281305710|gb|ADEF01000024.1| GENE 25 37571 - 38914 1303 447 aa, chain - ## HITS:1 COG:PA0016 KEGG:ns NR:ns ## COG: PA0016 COG0569 # Protein_GI_number: 15595214 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Pseudomonas aeruginosa # 1 446 1 450 457 183 30.0 8e-46 MKIIISGAYAIGTHLAKMLSRNHEDITLLDEAEDRLAQIGSDFDLLTMQASPSSIKALRA AGADHADLFISVTPDQSLNITSCVLAKALGAKKTVAMINNSEYTDPALQAFFADLGVSSL IYPEKLAAIDIINGLKMSWVRQRWDVHHGALVMLAIKLRETCEILNNPLKNLCGPDDPYH VVAIKRLNDTIIPGGNDELKLYDLAYFMTTPQYIPYIRKIVGKELYADVKNVMIMGGGST AVRAVNTMPEYMDTKVLEISEERCEQLNNLMDNDKALIINGDGRDIQLLQEEGITNTQAF VALTDNAETNILACLTAKRLGVRKTVAMVENVDYVNMAESLDIGTIINKKAIAASHIYQI MLDDNVVNMRFLTTTNADVAEFVAKEKSRVTKKPVKDLGLPKGTTIGGLVRNDEGMLVSG HTQILAGDIVVVFCHNVNMKTIEKFFI >gi|281305710|gb|ADEF01000024.1| GENE 26 38950 - 40887 1789 645 aa, chain - ## HITS:1 COG:PM0532 KEGG:ns NR:ns ## COG: PM0532 COG1154 # Protein_GI_number: 15602397 # Func_class: H Coenzyme transport and metabolism; I Lipid transport and metabolism # Function: Deoxyxylulose-5-phosphate synthase # Organism: Pasteurella multocida # 14 638 4 614 614 517 43.0 1e-146 MDIVENLLMKKDKFGLLNQIDYPEDLRKLSIDQLPQICEELRQDIIQEVSVNPGHFASSL GAVELTVALHYVFDTPKDKLVWDVGHQAYGHKILTGRRKAFNTNRKLRGLRPFPTPLESE YDTFTCGHASNSISAALGMAVATKQNHEDNKKIVAIIGDGAMSGGLAFEGLNNVSSTPND LLIVLNDNDMSIDHAVGGMEKYLLTLDTNATYNKLRFKASQWLHQRGYLDDKRKKGILRL NNAIKSAISHQQNVFEGMNIRYFGPFDGHNIKEIVRILQQLKEMKGPKLLHLHTTKGKGY KPAELSQIEFHAPGKFNIETGQRIQQDNDNQAPKYQDVFGDTLVELAKLNPKIVGITPAM PTGCSMNKLIDVMPDRAFDVGIAEGHAVTFSGGLAKEGMMPFCNIYSSFSQRAYDNIIHD LAILNLPVVLCLDRAGLVGEDGATHHGVFDMAALRPIPHLTIAAPMDERELRRLMYTAQL PNKGTFVIRYPRGRGVHTDWKCPLEEIKVGTGRRLRSGKDLAILSIGPVGNDVEKVLDSL GTLYSIAHYDMRFVKPLDETLLEEVGKHFQKVITIEDGIRMGGFGSAVLEWFNDHGYDIQ VKRMGIPDQFVEHGSVDELKALTGIDTAHIQHTIQDLLSAETMPS >gi|281305710|gb|ADEF01000024.1| GENE 27 40907 - 42382 1217 491 aa, chain + ## HITS:1 COG:TP0112 KEGG:ns NR:ns ## COG: TP0112 COG3579 # Protein_GI_number: 15639106 # Func_class: E Amino acid transport and metabolism # Function: Aminopeptidase C # Organism: Treponema pallidum # 69 486 22 438 450 285 35.0 2e-76 MNHVDFHLFFVSLNPETENMKPVMNQKKILLATALLCSSIAMYAQRAGGISADMLQKIER MQPSTQSSKGIFNALASNNIDNLAQNYANSGAIDDYFSIETPKQSIHDQKSSGRCWMFSG FNVLRANFAKQHNDTITVEFSHAYLFFYDQLEKANLMLQGVIDNASKPLEDTRMQFFFKN PINDGGTFCGVADLAEKYGLVPMSVMPETYSSNNTRLMARMVASKLREYGLELRSMVHAG KNKRTIETRKTEMLSTIYNILSMTIGKPVEQFTYAFKNKEGKTVTPLKTYTPREFYNATV GHPLNGTFIMLMNDPRRPYHQTYEVEYDRHTYDGHNWKYLNLPMNEIAELAIASLKDGHK MYSSYDVGKQFDRKRGYLDVDNYDYGSLFGTTFNMSKADRIATFESGSTHAMTLTAVDLD AKGMPLKWKVENSWGASAGHQGCLIMTNKWFNEYMFRLVVHKKYVPAKLLKEYEQKPIMV MPEDPLFEVDQ >gi|281305710|gb|ADEF01000024.1| GENE 28 42395 - 44857 1465 820 aa, chain + ## HITS:1 COG:PAB1300 KEGG:ns NR:ns ## COG: PAB1300 COG1506 # Protein_GI_number: 14521796 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Pyrococcus abyssi # 460 805 291 629 631 152 28.0 4e-36 MKNIGIKFFLLLSAVLWTADFSFGADVPIQKIRYAGPFVVQVPYRLDSVDVCQHPYDTLS MLETPVDLHQVFRGRFLSSPLLPKADAACALHLLGFQIQSDGFAHATLHVGGLTHYQLYV DGQLNKDGKLTLEPKTHDVVIKYLSNKGQLDTLQLQLESPQSELLHIDPTHQLFTLSHLT DRKFVTGVELSATGEYLITAYRDVVKGGKTTYTWKVTNLKSGAVVASTHHAIHWMHRSMQ YYWTREGSQGRELVVTDVNSGQENVLAKNLPTGNFVMSPTEDYLILLKQNKGPKEDKAIY EILEPEDRQPGWRDRVSLLKYDFATGLCQPLTFGYRNVSLLDISADGTHLLFMTNHTRLT QRPTTLYNIYSMDLRTLSVEQLVKDDGFVADAAYAPSGKEIVVMASPEAFHGVGVNVPQG KVPSMYDYQLYLLNIANRKVTPLTKDFKPGVSKFRWNKYDGQLYFTAMDRDYVHLFRCDM RTHKIQKMAQPEEVVKQMAFANQAPTMVYSGESASNADRVYTINLRRSQPKLVEDTNQET LANVQLGACKTWNFVNSRGDTICGRYYLPPNFDATQQYPLIVNYYGGCSPTSRNFETRYP QHAYAALGYVVYVLQPSGAVGFGQEFSSRHVNTAGKGVAEDIIEGTKKFVAEHAFINAKK IGCIGASYGGFMTQYLQTQTDIFAAAISHAGISDHTSYWGEGYWGYSYSEVSMANSYPWS NPELYVNQSPLFHADKIHTPLLFLHGSADTNVPIGESIQMFTALKLLGRPTAFVVVDGEN HHILDYHKRQKWQNTIFAWFAKWLKNDSTWWDALYPKKAL >gi|281305710|gb|ADEF01000024.1| GENE 29 45008 - 45907 876 299 aa, chain - ## HITS:1 COG:no KEGG:PRU_2042 NR:ns ## KEGG: PRU_2042 # Name: not_defined # Def: diaminopimelate dehydrogenase (EC:1.4.1.16) # Organism: P.ruminicola # Pathway: Lysine biosynthesis [PATH:pru00300] # 1 299 1 299 299 490 80.0 1e-137 MKKIRAAIVGYGNIGKFTVEAVEAAEDFELVGIVRRQGAENKPAELAPYKVVQDIKELEG VDVAILATPSRSCKEYAEKILPLGINTVDSFDIHTDIVDYRSALMPLCKEHHAVSIISAG WDPGSDSVVRTLMQSLAPKGLSYTNFGPGMSMGHSVCARSKKGVKNALSMTIPLGEGIHR RMVYVELEEGATLDEVTKEIKADPYFAHDETHVMAVDSVDAVKDMGHGVHLVRKGVSGKT QNQRMEFTMSINNPALTAQVLVNVARASMHQQPGCYTMVEIPVIDLLAGEREDLIKALV >gi|281305710|gb|ADEF01000024.1| GENE 30 46228 - 47223 705 331 aa, chain - ## HITS:1 COG:no KEGG:PRU_2879 NR:ns ## KEGG: PRU_2879 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 329 1 329 332 410 60.0 1e-113 MGKRLKDNISSAYIGAANQLKSLNAKRRIVAYVESYDDIYFWRTVLREFEDDKCYFQIML PSRLQHLERGKKAVLMNLLTDKVGRDMIACVDADYDYLIQGATQTSKEILSNPYIFHTYA YAIENLQCYAPSLFDTCVMVTLNDHHIFDMQRYIEDYSRAIYPLFIWSIWFYRTPEYNKF TITDFLRIIMPGHFTIANAEHNISNVRQKVGKRIARFHKEYPDAKESYLKVKADLRRLGV TPETTYLYIQGHHLFDKVVVPMLNKVCVQLTQEREREIVQQSKHGTQQRNELTSYRNSVE NISSMLKKNTAYRESEPFQRICQDIQKYIKS >gi|281305710|gb|ADEF01000024.1| GENE 31 47255 - 48076 783 273 aa, chain - ## HITS:1 COG:STM2746 KEGG:ns NR:ns ## COG: STM2746 COG3950 # Protein_GI_number: 16766058 # Func_class: R General function prediction only # Function: Predicted ATP-binding protein involved in virulence # Organism: Salmonella typhimurium LT2 # 170 258 316 410 427 63 36.0 3e-10 MKYADYIKRIEIDSLWSGRRHIVWNLDRQVNVLSGINGVGKSTILNKVIKGLLEGNNLIS ELPPSVKITVSPDDADRVRYDIIRSFDRPLMSSDTVAKVDKRLATELDWQLFQLQRKYLD YQVNVGNRMIEVLQKGGPDAAATAQQLSSAKVLFQDMMDKLFADTGKTIIRTQNEIRFSQ LGETLVPYQLSSGEKQILAILLTVLIQDHQPYVLFMDEPEVSLHIDWQEQLIDLILQLNP NVQLILTTHSPAVIMNGWMEHVTEVSDITDVNR >gi|281305710|gb|ADEF01000024.1| GENE 32 48282 - 48377 68 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNTALLFEKKCLSLTDLLMKELWLFIIIIYG >gi|281305710|gb|ADEF01000024.1| GENE 33 49356 - 50051 555 231 aa, chain + ## HITS:1 COG:TM1655 KEGG:ns NR:ns ## COG: TM1655 COG0745 # Protein_GI_number: 15644403 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Thermotoga maritima # 7 228 13 240 247 163 41.0 3e-40 MEENNYRILVVDDEQDLCEILKFNLETEGYAVDTANSAEEAMNMELTSYNLLLLDVMMGA MSGFAMAKKLKEESATAHIPIIFLTARDTENDTVTGFNLGADDYISKPFSIREVLVRIRA VIRRTAETENHEQPKVLKYQGLEMNLDRKTVTVDGKDVPFTKTEFELLHLLLSEKGHVFS RQELIDRIWPKDVLVLDRTVDVNITRLRKKIGRFSKCIVTRLGFGYYFDAL >gi|281305710|gb|ADEF01000024.1| GENE 34 50048 - 51466 974 472 aa, chain + ## HITS:1 COG:BS_phoR_3 KEGG:ns NR:ns ## COG: BS_phoR_3 COG0642 # Protein_GI_number: 16079962 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Bacillus subtilis # 219 472 27 276 279 145 34.0 1e-34 MRKISVGTRLYASIMAIFLLFAIAFIVFQQVREKQYKIELLNEKLQNYNKQLADAMKYMG KTDETTLDSYVKTHSLPNLRVTIIDNEGHVTFDNLEKNYNRFTNHANRPEVIEAKKKGSG SSVERNSKTLKQEFFYSATYFNDSKITIRSALPYNNDLTKSLQTDQHFIWFALTTIIILT LVLWSFLSRLGANITKLKLFASRADHNESLETEDLIAFPDDELGEIAERIIKIYKRLQST RQEQDKLKRQLTQNIAHELKTPVASIQGYLETILDNPHIDEETKKQFLKHSYAQSQRLTS LLQDISTLNRMDDAPEIKENVEVNISQMVEDISKETALQLEKHHMSFIINLPENIIVHGN KSLLYSVFRNLTDNAIAYAGNGTTITLDAIENNKDWSFAFYDNGIGVANEHLSRIFERFY RVDKGRSRKLGGTGLGLAIVKNAVMIHGGTIQAKNLPTGGLRFDFNIKKNNE >gi|281305710|gb|ADEF01000024.1| GENE 35 51463 - 52044 712 193 aa, chain + ## HITS:1 COG:lin0816 KEGG:ns NR:ns ## COG: lin0816 COG0454 # Protein_GI_number: 16799890 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Listeria innocua # 3 186 2 184 185 66 27.0 2e-11 MKITQATKEQAREIAKLIMLAMNYECCQNLAGPNHTLNEFEDLMTELVSMDESQYSYKNT FVALNDNNEVAGICVSYHGANLKKLRKVFIEKALQKFNIDYRDMKDEAQPDELYIDSIAI LPQYRRKGIAKELIMQALNKAKDLKIDKIGLLVDKDNPHAERLYTTQGFRYVDDTDWGGH PMKHLQYLITFYG >gi|281305710|gb|ADEF01000024.1| GENE 36 52028 - 54586 1746 852 aa, chain - ## HITS:1 COG:no KEGG:BT_3048 NR:ns ## KEGG: BT_3048 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 6 846 18 892 895 752 44.0 0 MVDKIICSLFVLLLGTLPATAQNSSVFERFFANAVTFSKTFPREKVHLHLDNSSYYQGDT IWFKAYVVTATNNQLSNISKPLYVELLDQLGNVLERHIIKLHDGEGEGHIALTNTFFTGY YEIRAYTRWMLAFDDASYFSQTIPIYRKRLTHKESPRSIAVYSMDKSMAQRPLPQKDELE ARFYPEDGNLVQGIPSVIGFETVSRDSGFVNLDGFLLSPSGERTIPISTIHDGMGSFMYT PGEQPANVEILFRGRSYRFELPKALPQGYSMSVANRETSFDVTVKRSSESLTDSLALFTF SQGTPHSFNTIEFVGKVSKTLRIMKSDLPPGIVRMSLINAAGHTLCDRFCFSYPKKTISM KGVSDSKVYTPYQKARYEVKVTDTEGKPVRNASVSIAIRDGEQTDYIPASQTIETDLLLT SDLRGYIHQPAYYFEERSRGRRKLLDNLLLIRGWRQYDITQLIGEKPFEPRQMPEPNLSL YGHVDSWFGKQQSNIAVTVLGKRDTIYVSGATYTDSLGNFSLPMDDMYGRMESVIQTKRN GKQKNRYADVSLYRNFEPGLRAYDWRELHPTWEEPVDTLALQQLVDSLTTNQLEANALQI DEVVVKGKKRHNTLKDTESFERDILAFYNIRKHIDKLRDEGKYVSNEVGFFLHNLNPLIN PEGTQYGVNPLRYSVNGEEIQLPYIEKDLDMVETAMLYMDKFNRYAYSVDDNYRIQKSEL TDAYTHLRVDTASQIALNKYVVRCAFKMADNWSSNKNYRPSRGIRRTVIQGYDEPKAFYS PIYPESGYFDNNADEMRRTLYWNPNLKTDENGIAIVEYYNGSYTTYMNVCAETLVDGVPA SLNAFSYPIRKK >gi|281305710|gb|ADEF01000024.1| GENE 37 54636 - 55988 1075 450 aa, chain - ## HITS:1 COG:CPn1015 KEGG:ns NR:ns ## COG: CPn1015 COG1055 # Protein_GI_number: 15618923 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Chlamydophila pneumoniae CWL029 # 4 446 2 418 420 290 41.0 4e-78 MASLTLAIVIVFCIGYLFIAIESVTKVNKAAVALLMFVACWTLFMLDPNTYLPGFSGQAL VNEVSSVIEKHLGSTSTTLFFLMGAMTIVEVVDQNGGFNFVRGVMKTKSKRSLLWRIAFM TFFLSAVLDNLTTSIVMIMILRKLVKSHEDRLIYAALVIIAANAGGAFSPIGDVTTIMLW NKGTITTAGVIEEIFVPSLVAMIVPAFILQYQLKGELEPTDVHVTSDYQVLDFSSTQRKI IFFLGVGGLMFVPIFKSITHLPPFVGILLVLGVLWTVTEVFYRRLHRKKDSMAKRVSNLL SNIDMSTILFFLGILMAVASLEQIGVLEGLGKWLNDVSNGNHYIVTGIIGVISSIVDNVP LVAGCMGMYPIEAAGDMAVDGIFWQLLAYCAGVGGSILIVGSAAGVVVMGLEKITFGWYL KHVSWIALVSYLSGILCYWVIRTFIFPTVI >gi|281305710|gb|ADEF01000024.1| GENE 38 56363 - 57571 1052 402 aa, chain - ## HITS:1 COG:BS_resA KEGG:ns NR:ns ## COG: BS_resA COG0526 # Protein_GI_number: 16079372 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus subtilis # 253 392 45 181 181 78 30.0 3e-14 MKNLLKNCCVMSVAALLLFPMFAFGQRTVTIKGNVKFIENDFKVGVYRFSGTLKQLLAET TVDPTTHKYTMSVPVDKIGDAMVVCGDWQAVNVWLQDEDMDIDFRGVDTAAIKIKNPPFV YIKGGKNNELMNLLNFDAYRNYQAMIVYSQKTYVTKFADEKNQKSLTNALYDFMGDDYEA RCRYYVEHYADRPSVMAAIAQLDYEKNKKLIDDALARLATVSPQANELVAQFHKDKAEEK IRIERVKVGAPMPAFECKSPKGKTLRPANFKGKVLVLDFWASWCGPCRQEIPNLKKIYAD FKDKGVEFMSVSIDGNRDAWVKAMGEEGMPWHQGWVSDGGKEVMDLYQFSGIPFILIIDK DGRIYRKHVRGDEIRKGVEDVLAGKAPAEETGTSISMGAMSM >gi|281305710|gb|ADEF01000024.1| GENE 39 57949 - 58116 128 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTYISFVDKQFHITLNLIDKQLDTSYNNYLVKIILTFCFSVLALHLYLYTYWLLY >gi|281305710|gb|ADEF01000024.1| GENE 40 58052 - 60322 1521 756 aa, chain - ## HITS:1 COG:no KEGG:BVU_0280 NR:ns ## KEGG: BVU_0280 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 4 756 24 769 769 411 34.0 1e-113 MAQSVTGKVVDEKQNPVSFANIVVLSAKDSTFLGGTSSDIDGLFRIEKLSQGSFLKVSSV GYKTKFINCNDASSIIITMEEDSHLLGEVIVKSQLPKTLLKDEGMITTVAGSILEKTPSM EHLLDLIPNVSVRKGNIEVLGRGAPEIYINGRKMRDGMELERLQPNEIKNIEVITNPGAR YNANVKSVIRITTKKAVGEGFSIDSKTNSEVNEQKRMSWVESLRLNYRKGRWDTNIHLYG AYRHKQDDKQIHQMTYLDDIWEQNSAISQEYTNVNPYVRLATSYSLNADNSIGASISYDR HAKDLGIGDIKGLSMRNNVQTEQSLSYFEYPSNSKTLLSNVYYVGKIGKMNIDFNTDYYC SGINEQMNNTEKINEVGVQEKVQKINSDRRTYNRLLASKLVLSVPFISGNLSFGSEFSAS NRKESYTVLPQDVVNDEDSRIKENMTSVFVDYSKTFGKLNVQAGLRYEYINFNYYDHNMY VANQSKTYGNFFPSLALSLPVGKTQMQLTYATDIYRPSYYELRNGVQYDNRYTYESGNPF LVPSISKNLSYALSWKWLNLSAMFTHISDEICTLVKTYKDNPQTALARPENTPSYNNMQV SLALSPKFGIWNPSLEMMLFKQWYHMDTNGTKNLNNPVATFQLTNTFDTKWMTASIILSG QTEGNMGNKFVRRGYFNTDISLYKSFLHDRLTLQLYVNDLFGTADEHRIFYSGSQRSTYY DGYSSSSVTLTIRYRFNTTASKYKGTGAGQAQKNRM >gi|281305710|gb|ADEF01000024.1| GENE 41 60639 - 61394 396 251 aa, chain + ## HITS:1 COG:no KEGG:Cpin_5158 NR:ns ## KEGG: Cpin_5158 # Name: not_defined # Def: transcriptional regulator, LuxR family # Organism: C.pinensis # Pathway: not_defined # 29 250 32 254 255 201 44.0 2e-50 MTDIKDFFIASNTVRNAPDYDSHVLSTLVQTVEAFARVTYQSVYLIDYYRQEFLYVSDNP LFLCGHTAKEVKELGYSFYLEHVPEEEHKMLVELNSSGFKFFDTFDNVDKYQCSMSYHFH LKSGTRSKLINHQLTPILLTDEGKIWIGMCVVSLSSHKTAGHVEFHKNGQRKYWKYSFEG HRWKECDGISLKEEELEVLRLSVAGLTMTEIADRMCRSLDSIKFYKRHAFEKLGVANISE AISRATLNKLF >gi|281305710|gb|ADEF01000024.1| GENE 42 61409 - 62158 420 249 aa, chain - ## HITS:1 COG:MA0255 KEGG:ns NR:ns ## COG: MA0255 COG0476 # Protein_GI_number: 20089153 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Methanosarcina acetivorans str.C2A # 3 156 7 161 247 90 36.0 2e-18 MEQRYSRNRLYVSDREQSIIKHYKILLGGAGIGSIIAECALRFGFEHITIIDGDKVEENN LNRQNYTENNIGRYKAECLAERLLSINPNAQIDFHTEFLTPHNIEKLLNEHDVAINALDF KDKTPFVFDEICKERKIPVLHPYNFGWAGFVTIADPLGHSISELSDGFKGFELKVAEYVT GHGAFWNQPKEWLDKIVTQYREESETLPPPQLSIASWITAGLCTTAMYNLATGKPVNYFP KFYFSSLLQ >gi|281305710|gb|ADEF01000024.1| GENE 43 62876 - 63475 620 199 aa, chain + ## HITS:1 COG:no KEGG:PRU_0068 NR:ns ## KEGG: PRU_0068 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 199 1 200 201 256 57.0 3e-67 MDAQISNNQWCENIILVDGDYIDQVAFDLIVNFERMIGRRIPAADTARWIDCIALDGGIR EGTHDTQVIFVHSKEKTTLENFQPGNFENDLNGKAFKDHLGEFMLSSFPVEDIVQDTDFF MDILLTVCQHPNVKRMMIVPNCEREGVFDRIRTSLRSVDDENKRITVFAMQPLVGGNFRQ EILGYSLMNALGIKSEEIK >gi|281305710|gb|ADEF01000024.1| GENE 44 63556 - 64788 1179 410 aa, chain + ## HITS:1 COG:slr0049 KEGG:ns NR:ns ## COG: slr0049 COG1748 # Protein_GI_number: 16331467 # Func_class: E Amino acid transport and metabolism # Function: Saccharopine dehydrogenase and related proteins # Organism: Synechocystis # 27 402 24 388 398 525 62.0 1e-149 MIMSRVLTIGAGGVATVAAFKISQNPEVFTELMIASRRKEKCDKIVKAIGNPNIKTAQVD ADDVEQLKALMNDYQPELVINLALPYQDLTIMEACLACGCNYLDTANYEPKDEAHFEYSW QWAYKDKFEKAGLTAILGCGFDPGVSGIFTAYAAKHYFDEIHYLDIVDCNAGNHHKAFAT NFNPEINIREITQKGLYYKDGKWIETEPLEIHQPITYPNIGPRESYLMHHEELESLVKNY PTIKQARFWMTFGEQYLNYLDVIQNLGMSRIDEIEYEAELADGSGKKVKVNIVPLQFLKA VLPNPQDLGENYDGETSIGCRIRGIKDGKELTYYVYNNCKHQDAYKETGMQGVSYTTGVP AMIGAMMFLKGIWKKPGVWNVEDFDPDPFMEQLNKQGLPWHEEFGKDLEL >gi|281305710|gb|ADEF01000024.1| GENE 45 64864 - 65892 1188 342 aa, chain + ## HITS:1 COG:mlr0030 KEGG:ns NR:ns ## COG: mlr0030 COG0468 # Protein_GI_number: 13470353 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Mesorhizobium loti # 15 339 16 344 365 439 68.0 1e-123 MAKEETKSPATNEGKLKALQAAMAKIEKDFGKGSIMRMGDEQIEDVEVIPTGSIALDCAL GVGGYPRGRIIEIYGPESSGKTTLAIHAIAETQKAGGIAAFIDAEHAFDRFYAAKLGVDV DNLWISQPDNGEQALEIADQLIRSSAIDILVIDSVAALTPKKEIDGDMGDSNVGLQARLM SQALRKLTSNISKTNTTCIFINQLREKIGVMFGSPETTTGGNALKFYASVRLDIRKVTSL KDGDQVVGNQVRVKVVKNKVAPPFRKAEFEITFGEGISKIGEIVDLGVEYDIIKKSGSWY SYQDSKLAQGRDATKKLLKDNPELCEELEAQIKQAIAEKTEL >gi|281305710|gb|ADEF01000024.1| GENE 46 66063 - 66581 459 172 aa, chain + ## HITS:1 COG:no KEGG:BVU_0830 NR:ns ## KEGG: BVU_0830 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 172 1 163 163 129 41.0 3e-29 MRKLFLTAVIALLSIGAYAQEGQAYLGGQLAYPTDIKSLGVGLKGGYGITDAIRTQATFD YYLKKNNASWWDLNLDVHYLFSLGDNIKVYPLAGLTYLRGSVDGFTQTVSTPAGSITVGS NESYSDGNLGVNLGGGFQYDLTEKLALNAEVKFQIIKNTNQGVISAGLAYKF >gi|281305710|gb|ADEF01000024.1| GENE 47 66929 - 67477 524 182 aa, chain + ## HITS:1 COG:no KEGG:PRU_0688 NR:ns ## KEGG: PRU_0688 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 7 182 1 176 176 200 52.0 2e-50 MNEKQPVNEFARALQKDLYFYLLSLNKVDAHLPDAPDIEEKWLQIANAYMPDAVREFNKY PTVVFGWMMYIGMAVAKYWDEDWELYNKVENLYLYLRNRIDFDHMDDYIREKVLYLNAEQ AQTLQSVVGECAARTNNILQHFPITPGSEDAYRAVVTALHQLYSLGAAIQLKSMGYHMTK LE >gi|281305710|gb|ADEF01000024.1| GENE 48 67453 - 67590 106 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPKTIFKCILTRNMPICHLDILIVMRGKSKGKGMSPRYYSNFVMW >gi|281305710|gb|ADEF01000024.1| GENE 49 67694 - 69619 2218 641 aa, chain + ## HITS:1 COG:TP0216 KEGG:ns NR:ns ## COG: TP0216 COG0443 # Protein_GI_number: 15639209 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Treponema pallidum # 1 636 1 633 635 684 61.0 0 MGKIIGIDLGTTNSCVAVFEGNEPVVIANSEGKRTTPSVIGFVKDGERKVGDPAKRQAIT NPMNTVYSIKRFMGETYAQSQKEAERVPFKVVDENGYPRIDIDGRKYTPQEISAMVLQKM KKTAEDYLGQEVTDAVITVPAYFSDSQRQATKEAGEIAGLKVQRIVNEPTAAALAYGVDK AHKDMKIAVFDLGGGTFDISILEFGGGVFEVLSTNGDTHLGGDDFDQVIIDWLADGFKAD EGIDLRKDPMAMQRLKEAAEKAKIELSSTTSTEINLPYISAEGGVPKHLVKTLTRSQFEQ LAHDLIQACLVPCQNAIKDAKLSTSDIDEVILVGGSSRIPAVQTLVKNYFGKEPSKGVNP DEVVAIGAAIQGAILNKESGVGDIVLLDVTPLTLGIETMGGVMTKLIDANTTIPTKKSET FSTAVDNQTAVTIHVLQGERPMASQNKSIGQFNLEGIAPARRGVPQIEVTFDIDANGILN VSAKDKATGKEQKIRIEASSGLSQEEIDRMKTEAEQNAATDKAEREKVDKLNQADSMIFT TENFLKDNGDKIPADQKPNIESALQQLKDAHKNADVAAIDAAINNLNTVMQAASAQMYGQ AGGAQPGAGAGFTGEQQAGGEQSQGSTTDDTVQDADFEEVK >gi|281305710|gb|ADEF01000024.1| GENE 50 69701 - 69889 101 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MACQWLSNNGLSMLLKFCTRHTICIYLIINLSFKLSRTLSPIKSRHKYGTNISTKTIKND KI >gi|281305710|gb|ADEF01000024.1| GENE 51 69985 - 70500 492 171 aa, chain + ## HITS:1 COG:no KEGG:Plut_0901 NR:ns ## KEGG: Plut_0901 # Name: not_defined # Def: hypothetical protein # Organism: P.luteolum # Pathway: not_defined # 1 167 1 166 177 108 34.0 9e-23 MSKAKLREKLDTLPKENVINLMMSLYDASKEAKTYLEFYLTPDSYAEVEKYKKIIQNEFF PVRGFSEKPSFATCRKAISDFKKLKPAPECLADLMLFYIEQGCEYTMTFGDMWEQYYVTL ENNFEKAMEFISLHGLLPNYNERIERMLNATDCGWGFSDTLWDIYSQYQSS >gi|281305710|gb|ADEF01000024.1| GENE 52 70678 - 70884 236 68 aa, chain + ## HITS:1 COG:no KEGG:PG1203 NR:ns ## KEGG: PG1203 # Name: not_defined # Def: transcriptional regulator, putative # Organism: P.gingivalis # Pathway: not_defined # 6 67 2 63 69 90 77.0 2e-17 MESPTNRIKEVLIEKGIKQTWLAEKLGKSFTIVNSYVCNRRQPSLGLLFQIAEILQVNPK ELINTPDE >gi|281305710|gb|ADEF01000024.1| GENE 53 70892 - 71839 800 315 aa, chain + ## HITS:1 COG:NMA0004 KEGG:ns NR:ns ## COG: NMA0004 COG2184 # Protein_GI_number: 15793038 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein involved in cell division # Organism: Neisseria meningitidis Z2491 # 117 315 13 189 191 186 50.0 4e-47 MVEHKKSIRFFNDREVRAVWDDTHNKWWFSVLDIIAAINEQDDYQKTRNYWKYLKTKLKK ENNELVSATNQLKLQAPDGKQRLTDMLDGEGVVLLAKAIPNVKAMGFLDWFTYSDNTIDG QSKKKAYQLFESGLLKTAEPGSIKCLQQIHAYLFGGLYDFAGQIRTKNISKGGFTFANCM HFPETLQTIERMPETTFDEIMDKYVEMKIRANEYHVNSFTNGRVQPNLCNVAHPFMEGNG RTTRIWLDLMLKRSLKWCVDRSQIDKNEYLSAMRESVSDSTHIKSVVQPALTTKIDDREM FMKGIDYSYYYEQNE >gi|281305710|gb|ADEF01000024.1| GENE 54 71848 - 72006 68 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRCNYTNGLESYFPLQSALFDKTDDREMISKGIKVSHYYEELSRTYTIKNIK >gi|281305710|gb|ADEF01000024.1| GENE 55 72011 - 73198 758 395 aa, chain + ## HITS:1 COG:no KEGG:BDI_0247 NR:ns ## KEGG: BDI_0247 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 1 395 1 391 391 266 40.0 1e-69 MAQDRTAVDTIKGYFYQFDFYILQILESQDNYKEFIIEGIEDVDIETPLGLTAVQCKYYE GTEFNYSKISKAVRLMLDYFVEHRDVSFFLYGHFKSGQDKITTPISLDILKSKLLTYKRE NKEYKLHVEKGLSDDDLSLFLSHLKINIGAPSIKDQLCKVYKSMKKALELKSDVESYLFY AIGLNIVRELSTSKDIGHRKITRGKFIDKIKNTKKDCLDIWFKKRVSEDVYCASIKRKYF TSYNISPKERFFIIDATGEKIPIIKKIIQTISNRWTDISQRQTNPYCPYVYIHGVLPEDK LELLKSIYNDGVVFIDGYNYLNAEFDVNSIIKSANHRNGIVLKVIEEADQILKIIQTIQG KQKEIYQFYKEKEIITCQDAISILIDEIDTITKMI >gi|281305710|gb|ADEF01000024.1| GENE 56 73201 - 74877 678 558 aa, chain + ## HITS:1 COG:SMc01432 KEGG:ns NR:ns ## COG: SMc01432 COG0433 # Protein_GI_number: 15965868 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Sinorhizobium meliloti # 131 517 152 509 678 180 30.0 7e-45 MKEETKINAEVIAVYPNKVRISVDDLNDFQIAEEKLKVGSYLRICDSDNVIMIAIIENFT IEVGVDNNETPSRKYIIEANPLGMLRDGVFERGGDTLSIPPKKVEPAKKEDIQKIFEMSV EPENKFTFSALASDSSISIPVDGNRFFNKHIAIIGSTGSGKSHTVAHILQKAISSKEHEY NGINNSHIVIFDIHSEYKSAFPNANYIDINNMILPYWLLNSDELQELFIDTEANDHNQRN IFKEAIISDRKDNYKGSQEEKDKIHFDSMLYFDIHKVLKHAKFKNTEMIDTGEIYSSGAK KGQAKQNQGSLFGKLTNFISRMENKLNDRRMDFLLGENAKQITFEDTLKQFIGYGANKTN VTIIDLSGVPFEVLSITVSLISRILFEFGYYYKRSLSEKVDGINNDVPLLLVYEEAHKYI PNSDLYKYRASKEAIERIAKEGRKYGISMMLATQRPSEISDTIFSQCSNFLAMRLTNPID QTYVRKLLPDTLGDLVDKLPSLKAGESLLIGDATALPSIVHIGPCNPSPSSNDIPYFKLW KEEWKNIDFNKIVNKWKN >gi|281305710|gb|ADEF01000024.1| GENE 57 75064 - 75297 98 77 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNATLRTTSSDVRKELSIQDDRTESDNRIEVTLLKGIAENNLPHTVRCKSTKQPYAERHV RRCGRSVNVKVGGKCLL >gi|281305710|gb|ADEF01000024.1| GENE 58 75829 - 76083 301 84 aa, chain - ## HITS:1 COG:no KEGG:PRU_0968 NR:ns ## KEGG: PRU_0968 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 80 49 128 129 82 51.0 5e-15 MITKDSIETAYCFFHQKWQVYRNSTMEWQKEDIEYAISSYVERMNQELYALLSKGREEYL QQSETFAFDLADAVDKLDKMKNDK >gi|281305710|gb|ADEF01000024.1| GENE 59 76161 - 76346 146 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880404|ref|ZP_06289115.1| ## NR: gi|282880404|ref|ZP_06289115.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 11 61 1 51 51 97 100.0 2e-19 MDHLPLHDTPMLVSAINFLLRDEEFDNLDQICYHFNVDREELEKRLSAAGYSYSTEHKRF W >gi|281305710|gb|ADEF01000024.1| GENE 60 76457 - 77677 1115 406 aa, chain - ## HITS:1 COG:sll1369 KEGG:ns NR:ns ## COG: sll1369 COG2027 # Protein_GI_number: 16330854 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) # Organism: Synechocystis # 33 406 40 397 430 76 23.0 9e-14 MAVAPTSVLVLMSIVLLFMACGDKHRKETKEKQPDIAIDDSLRSRLAAFAQDPRVQGKFA FHVYDLTADKPVYGYHETLTQPSASCLKLLSGVAGLHLLGSDYMYITGLYQRGMVSNGVL QGDLTFKGSLDPQFTEQELVRFGKAAKKRGINRVNGKIYVDLVIQEPVKSEEHWYPWDLS FSRYGLFYKGAPRVVKSLKSVMRTQGIAFADSQVVLGTMPAGSKVIYRYGTPIHRIVKRM WKNSSNTQSTALLYTIGNRINTQADPTATGVAYLRKFLREDLGMTDTSLVVHDGCGLCTY NHLSPQALTAILVYGYKDKSIHTMLMQNLAIAGVDGSLAHEMTGPKTRGKIHAKTGTLSH PYGISSLAGYCRGSNGHDLAFAVMSSEMSVLDARVLQRRLCEKLVE >gi|281305710|gb|ADEF01000024.1| GENE 61 77774 - 78427 374 217 aa, chain - ## HITS:1 COG:no KEGG:BVU_2341 NR:ns ## KEGG: BVU_2341 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 4 217 1 213 213 270 55.0 3e-71 MKTLNIQKLHQRPSAAAMIPAIMDSQKIAFETISVANWREQYPYTPQVRFRMAHDEAAVY LHYCVSEDSVRAVATEDNGRVWEDSCCEFFSQPADDDTYYNIECNCAGTILVGCGKGREG RELAPLSVLEKIDRWSTFGRSSFEERVGTYDWQLALIIPLSIFFQHQIKPLSGRTIRANF YKCGDALQKPHFLSWNPIDIEKPDFHRPDFFGELIFE >gi|281305710|gb|ADEF01000024.1| GENE 62 78430 - 79533 1000 367 aa, chain - ## HITS:1 COG:no KEGG:BF0928 NR:ns ## KEGG: BF0928 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 4 363 2 360 361 509 67.0 1e-143 METEKLNQVISPFLIEGTVSKISPLGNGLINDTYKIETKEDNFPDYVLQRVNNEVFTDVD LLQHNIEVVTNHIREKLQKQGESELDRKVLRFIPTKEGKTYFKDSDGKYWRISVFIPDAK TYELVDAAHSYDAGKAFGHFQSMLTDVPEQLGETIPDFHNMELRMNQLREAVEANPVGRV AEVQDMLDELETHANEMCKAEQLYRDGKLKKRICHCDTKVNNMLFDENGNVLCVIDLDTV MPSFIFSDYGDFLRTGANTVAEDSSEFDKIDFRMDIFEAFTKGYLESAHHFLEPIEIENL PYAAKLFPFMQCVRFLADYINGDTYYKIKYDKHNLVRAKNQLCLFRSACTHEPAMRTFIK ACLNEIQ >gi|281305710|gb|ADEF01000024.1| GENE 63 79490 - 79645 90 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRKGLITWFSFSVSIQLFLFIAYYKDLDLCDFSYLRTSFNKNDSHKIIKIL >gi|281305710|gb|ADEF01000024.1| GENE 64 79664 - 81052 945 462 aa, chain - ## HITS:1 COG:CAC3444 KEGG:ns NR:ns ## COG: CAC3444 COG0534 # Protein_GI_number: 15896685 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Clostridium acetobutylicum # 29 458 18 461 462 206 30.0 6e-53 MFSSKKSEALLANIRENKTLTRGEKLNLIVELSIPSILAQITTVLMFFIDASMVGHLGTE ASASIGLVESTTWLLGSVTAAASMGFSVQVAHFIGANDFVKARQVFRHGLICTLMLSVVI AFIALFIYQPLPFWLGGTSDIARDASLYFLVFGLAMPFMQLASLTGAMLKCSGNMHIPSI ISVGMCVMDVVFNYFFIYVLHLGVLGAAFGTATAFLIGSLLQAYFAIFRNKILALGQDHE PFRWMSNYVKNALKIGAPMAAQSILMSGAQIVSTIIVAPLGKVAIAANTFAITAESLCYM PGYGIGEAATTLVGQSVGAGRYDVCNSFAHMTVFLGMAVMSVMAVLMYIFAPEMIGILTP VEEIRVLGIQSLRIEAFAEPFFAAAIVTYSVCVGAGDTLKPAIMNLLSMWCVRLTLAAML APQYGLKGVWIAMAIELCLRGCIFLYRLFSGKWLHQLHQTSL >gi|281305710|gb|ADEF01000024.1| GENE 65 82368 - 83030 647 220 aa, chain - ## HITS:1 COG:STM4397 KEGG:ns NR:ns ## COG: STM4397 COG0545 # Protein_GI_number: 16767643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Salmonella typhimurium LT2 # 99 197 131 216 220 72 39.0 5e-13 MKRNKLLYLMMLLLGMGIMAACSENDGEVEEFADWQNKNETYFNQLYASTQQRIAKGDQS WKIIRKWSLPEDNQHFHANLGDYIIVHILNAGSSTSGSPLYTDSVKVNYRGRLIPSATYT GGYVFDRSYNGKYNPQTMRPAKFAVNGLVDGFTTALMHMTIGDRWEVYIPHQLGYGNKEQ SNGTIPAYSTLIFDIGLAGFYRAEAPTVRASASTGKWIER >gi|281305710|gb|ADEF01000024.1| GENE 66 83041 - 84585 1602 514 aa, chain - ## HITS:1 COG:SA1394 KEGG:ns NR:ns ## COG: SA1394 COG0423 # Protein_GI_number: 15927145 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Staphylococcus aureus N315 # 10 502 8 460 463 490 51.0 1e-138 MAQEDVFKKIVSHCKEYGFVFPSSDIYDGLAAVYDYGQNGVELKKNIKEYWWKSMVLLHD NIVGIDSAIFMHPTIWKASGHIDAFNDPLIDNRDSKKRYRADVLIEDQIAKYEEKIAKEV AKAAKRFGDAFDEAQFKATNNRVLDYQAKRDALHERYTAAMQGPDLDELKQIIVDEEIVD PISGTKNWTEVRQFNLMFSTEMGSLSDATNKIYLRPETAQGIFVNYLNVQKTGRMKLPFG IAQIGKAFRNEIVARQFIFRMREFEQMEMQFFVKPGTELEWFKRWKELRMAWHQALGFGA ENYRFHDHEKLAHYANAATDIEFKMPFGFKEVEGVHSRTNFDLSQHEKFSGKSIKYFDPE TNESYVPYVIETSIGVDRMFLSVMCHSYQEEELEGGDKRIVLRLPAALAPVKCAVMPLVR KEGLPEKAREIVNLLKFHFNTSYDEKDSIGKRYRRQDAVGTPYCVTVDFDTLKDNKVTLR HRDTMQQERIDISELCAHIEDKVSIVSLLKKLQA >gi|281305710|gb|ADEF01000024.1| GENE 67 84836 - 86605 1407 589 aa, chain - ## HITS:1 COG:no KEGG:BVU_1153 NR:ns ## KEGG: BVU_1153 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 19 575 11 582 593 181 29.0 9e-44 MIMNRISKYILTGFASLSLTFVTTGCDDLFNDAPVDKLAEPSIWASPNLLDEYSLVWYHN LSNGFSTMMSTSWFLRYMSKPYTGWFTDQITYSRTEWSRTIFAEEVAGEEEAINTAGLNE WGKDYEMIQHINRLLANANEIADGPHKNRVLGEAHFFRGWYYYQLLRRFGAPMLIQELYD PLNDQRKFPRSSYEEMVSYIASEADKAANLLAVRNEPENVGRVTKGAAIMLKAKAYFWVG SPAFQNKGKTIYGFKSDRSKEMMQKAVNAYEELMRLGCYSLVPVTGNTESEIAESYNSLF RLHNSSESIYEIQHSADGIVDDFGHRLDEDAASPFFAGTSCAYVPTQNHVDEYGMRDGKT YDAQHPYANRDYRFYANITYDGSTYNKHEFEIHYAVDKGKEVPGADLTKYGTSRNAAVTR TGYYMRKFLDPKTELFGDSKYGSKQHYIIWRYAEALLDYAEAQFRVGNAAKALEAVNEVR QRVHMDALPSITLEQILHERRVELAFEESIYWDYLRLGTAFDKLNGSTNPLQGMKIVKLA DGTTTYTVSDLKSQAAERVFRANQYYYPIPWSEVRYHGIEQNEGWHEIK >gi|281305710|gb|ADEF01000024.1| GENE 68 86625 - 89711 2356 1028 aa, chain - ## HITS:1 COG:no KEGG:BF3971 NR:ns ## KEGG: BF3971 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 22 1028 137 1146 1146 457 33.0 1e-127 MRKSFLLTLLLSVVCFMPVLAQDITVSGKVVDSSGTPIIGAAVKAQGEKTGVITDKDGNF KIVMPKGKNNLVVSYLGYKEMVVQAILGKLLNIKMKEDAQNLDELVVVGYGTQKKSALTS SIETVKGEDLLRMPTPNLDQALNGQVAGLQVMSLSGDPGAAREATIRIRAMSGAVSSPLL VIDGIPRFSENTTEGEQRLSDLNPDDIESISILKDAAAAAVYGVRAANGVILVKTKRATG DSKIRVNYRGQFNIQEATQFPHFLKSYEYAKLYNKAVEGVRNAQPYTEEELELIRTQSMP NKYADTNLLDYLKSHGMSTTNAVSLSGGNKFVRYYISGAYTNTVGLYSGVGRDRFNYAAK LDATLAKGLTLSLDMSGVRSEYKNTSYTTIDAAYSYAPTQPFVYDNGDLASIGHANPLIS VRGLGGYKQMITKMNTVTANLKWELPWVKGLSVYGRVTVDNNSSLNKNYNNPVTLYLYNE KNKEITVDKTTIYPKAKISVYQGTQFVDNALIEFGANYDRTFGGKHHVTGLLVANYQSYK RKSMDGTNNDLPGLYPEVLGSTNTGTLHGVDSEVQRASLIGRATYGFSNRYFAEFSFRMD GSAKFHPDHRWAFFPTVSASWILSNEEFFKSWRQKVLSNVKFRLSTGLLGRDGSVQDYSY LLKYIYSPAYGYNVGGVFKPAVIVATGNYPNTRLSWEKNRDYNVGIDLGFWDNRFGLTYE YYVRYRTDMLTPAPDYLYPASTGTNGSVPLMNFGKLKAWGWDLTLTHRNSINKFRYDAAL TLSLGRDEVIDWGDESNQLENMRRKGQSTGTTWMYESLGLFQTQEEIDNWKLNQDGTYKG KNKTIKPGDIKYKDQNDDGVLDDKDLKPFRDSQYPDFTGSLRLGASYKGFFVSVMFQGVA GFKQYVSEMYSLENNSLPKFQDYHLTDCWTPDNPNASFPRVKLATARDNNRKKSSFWVRD NSFVRLKSVSVGYSLPSSVLSKLKLSSLSISLMGGNLYTWSKLKYMDPESMRGYPIQRTY GINANIGF >gi|281305710|gb|ADEF01000024.1| GENE 69 89716 - 92289 2062 857 aa, chain - ## HITS:1 COG:no KEGG:PGN_1976 NR:ns ## KEGG: PGN_1976 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 24 856 30 857 859 836 49.0 0 MRKFLMILFLMGMMFPNPTLAKKKDKKKTDALKVLADKPKDTGGIEDYNKAIKDAKVCKG MFNTYQKKDGKLYFEMPDSVFSHFYILSNRISKTSNTSDYVAGQMVTYPMLLRFTKDSTR VYMHLVQNDNVVAKDDPIAVAFRSNFADPVLKAFKIAGRKDKNVLIEVTSFFGGNEKCIS PIKKDNPLSILLGGKKSLKGTFVSDASGITEVKAFPKNVEIKSMLSYNLTDKDMPYTVEM HRSLFLAPDKPMRMRLKDKRVGFFDTEKNIYSSNKDNIETETYINRWRLEPKDGEWEKYY NGELVEPKQQIVYYVDTAFPEKWRATVRQGIEDWNKAFEAAGFKNVVKALDYPKDDPNFD PDDMRYNCVKYAVTDIANAMGPSYVDPRTGEILTADVIWYHNVVSLLHDWRFVQTAAVDA RTHKAVFDDDLMQESMRYVAAHEVGHTLGLMHNMGASYAFPVDSLRSPSFTQKYGTTPSI MDYARNNFVAQPGDLERGVKLTPPVLGVADIYAINWGYRLIKDADTPEAEKKTLDAWIDA KKGNPMFEFGAQQFMGTVDPTAQSEDLGNDHIKAGNYAISNLKIIVKNLEKWTFEKGKNY DDVTAMYKEVVSQYSRHLHHVIPYLGGVCFHEIRQGDNQRGAKTYVDKATQRKAMKWLVN QALTYNSWLSPQSLLVKLDLPSTVNMKLQKSLAGGIYGATTLFRVSEGYKVNPNKNYSLG QYMNDAFNEIFQNTLKGKALSESDINLQASIISLFKKSAGLDSDASKKKGLSLLQEELKD DNICLPTLPCSHTEAEYSFMRINYGLPALSPNLLEPLMLSQLKKVVALYKQKRATGDAKT RNYYEYQILQIDKLLKK >gi|281305710|gb|ADEF01000024.1| GENE 70 92726 - 92968 89 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282878743|ref|ZP_06287511.1| ## NR: gi|282878743|ref|ZP_06287511.1| YaaA family protein [Prevotella buccalis ATCC 35310] # 1 68 1 68 253 94 69.0 2e-18 MQILLSCAKDMTDTAPDLALSTTLPQFQHEAEQTSVYLMKYSTTELAEMLQINPQLASLN KLRYTHFFRAFAHSSRYSCL >gi|281305710|gb|ADEF01000024.1| GENE 71 93003 - 93488 365 161 aa, chain + ## HITS:1 COG:NMB0895 KEGG:ns NR:ns ## COG: NMB0895 COG3022 # Protein_GI_number: 15676791 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Neisseria meningitidis MC58 # 1 158 96 252 259 109 38.0 3e-24 MSVQQLQYADQHLWITSFLYGLLRPLNGIKNYRLEGCVQLPEYDNQTMFDFWKPRLTQLL IDAVRADDGMLLNLASAEMKKMFDWKRIKKSVRIIEPAFKVRKNGKLKTIVVYTKMCRGG LARHAIIHHAHTVDALKAFEYEGFVYNEQESKGDELIFTLE >gi|281305710|gb|ADEF01000024.1| GENE 72 93503 - 94429 574 308 aa, chain - ## HITS:1 COG:no KEGG:BT_3281 NR:ns ## KEGG: BT_3281 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 17 307 8 297 299 166 36.0 1e-39 MSIKMKKIYTIFSLPAICMIVIVSCTTNDSITSEIEEPIYNVDDNVKDVIQHEKYILYNK YKTYLITNPLTRDYKFNFQRKNNLKITAPVQSTEVLQAGINLLHETFLDIYSEDFKKKNM PFSILLADSILFLGQETGTPYYHAYVSQRFIALGGVRSNMLYTDSIKQIIRGDINSRFWI DYMNGVKELFSIPEEFADVSKSYYRKDVTSIPELGDVAGKQPYEIDYYQLGFVNYNAAAT FYDKEYKEWWIEVPDEETDKRQWVAFCFNTPKTQRDAIITKYPKMKQKYLLLKRAFANCE GFDIDRLP >gi|281305710|gb|ADEF01000024.1| GENE 73 94435 - 95871 867 478 aa, chain - ## HITS:1 COG:no KEGG:BT_3280 NR:ns ## KEGG: BT_3280 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 478 3 477 489 297 37.0 5e-79 MNYKNIFKILYGVTVLFVTVSCNDFLEEKSQDLYIPKTVDDYREFIAGEALQHGHSNGVV LGEYLDVLTDDVAEKVNPRRKNTVDSRETTWGYYSWQLDPEVDFNNTVQADKMWDVCYHR ILIANITLDQMSKITGDANKKKALEAEVRFIRAWSYFNLVNTYAQPFMSKEQANTTPGVP INTATSVQNRQLEKSTLLEVYDVMERDLEKAAYLFEEAHIQSTIFRPNLNATLLLLSRIA LYTKQYEKAIKWANKLISQGTVQLYDLSNYQDKSTQRFVDGANEEIIFSYGSEKAYKLST IISARNTTKGCYIVSPELLKMYEPNDKRRNVFFYPKAGLIVKPYKYYEYGSKNIYPCIFH LSEAYLNRAEAYVEMGQTEKAVDDLNTLRAKRIKGYTRETIHDNKEASHQIRNERRKELC FEGHRWYDLRRWGCPELRHVYSSSDVASERKEYVLKQNDSRYTLPIPRAERNMNYNLK >gi|281305710|gb|ADEF01000024.1| GENE 74 95885 - 99163 1762 1092 aa, chain - ## HITS:1 COG:no KEGG:BT_3279 NR:ns ## KEGG: BT_3279 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 32 1092 119 1182 1182 1107 51.0 0 MTGKKILIFLLMTFYSLCVTLAQDKGLFIIKGKVVDSIDEPLPGVSVKAKNMSTKTVTAD DGSFIIKVNKEPIELVFSYIGMREKTVLCKSQKAITVVLEDNAVNLDNVVITGYQEIDKR KLSSSITTMKMSELQTPSTNSLDQMLQGRIAGLAVMNLSSTVGVAPKIRIRGSSSITGNR EPIWVVDGIILDEPVSVSVEELNNIDNVNFIGNAISGINPDDIERIDVLKDVSATAIYGV KAANGVIVVTTKRGKGERPTISYKANWGVTMAPNYGILDLMNSKERIEVSEEMLNRGLEF KTYRPTDMGYEGELQKLWSKETDYDTFRKRVKDLKELNTDWMNLLFRNALSQQHSVSVSG GGKRVDYYVSLGYLHQEGVSIVEKLKQLTGKVKVNMQLTNHLEAGVDLSTNSSDANYAHH SIALLDYAYRTSRAIPAFHDDGTYFYYNNDVTKYASLPFNIFNELNTTGQDVAKKSTNIK INLTWRPWDWLKLQSLTGMSTSASNQENWADEQSFYVSKMRLVPYGGKIITGNEYYYEDA ILPLGGELKYENSSSKRYTFRNVVDLNKTWKKHHLFASVGTELISIQLNSHRGRYLGYMP FRGKTFADIDVSIYKGYARAVQASPLQIIDNTLNTMSLFSTMTYTFDDRYIANFNIRTDG SNRFGQDKSVRFLPVWSTSGRWNVHREKMLQSWRWLDELALRASYGVQGNVHPSQTPYLI VKQENYNSILGEFVATLKQFPNKHLRWEKTVSYNFGIDFSIFHDRVSASLDVYNKKGYDQ IIQRRIAPSNGADFVTINEGDIENKGWELAFNVVPLRTKDLVWSMSFNTGQNFNKVTQEG DTKATWQDYVNGTLIKNGYAVNSLYAYRFKGLNGQTGLPMFYGETEKDEHGRTIINSQQE AFDAAFVYVGKREPDLTGGFSSSFKYKSFTLNALFSFALGNKIRLNDLYTTSGQGLPYPQ QNMSHEFVNRWRQPGDEYKTNIPALSDNQMRYVSYDRVYPIADNRWDMYNKSDIRVVSGS FLRCRSVSLRYELTKKLLDVLHLRGGYMSFETSNLFVLKDPLLRGRDPEQISLSSGAVPP RIGFACQISLTF >gi|281305710|gb|ADEF01000024.1| GENE 75 99243 - 101612 1494 789 aa, chain - ## HITS:1 COG:no KEGG:Coch_0557 NR:ns ## KEGG: Coch_0557 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 14 784 47 824 827 786 50.0 0 MVENDSIHTANDAKQKETAYDKLMKEAPLSVTKGMFTVHHIKDRWYFEIPDSLIGRYFLA STRYTSVPQNFGKYGGESLNTRTFYFEKRDKENLLIRTYVLSQESNERDCITENVKKNTI DPIVELLPIIQGNRLKNMNLVDATSLFTKDNSLMSFTKSSKKLMRLGSLQTDRTFIDTIK TYTQNIEVVTTRTYGVNESIVPASSTGYITLGLNTSIVILPKYPMRKRLWDERVGYFVKE YTIFSDKQHKVQKESFISRYQLIPKDKEKYLRGELVEPIKPIVFYIDPATPKKWIPYLIK GINDWNVAFEAAGFKNAIMGKEWPNDSTMSVDDARFSMIRYLPSEIENAYGPNIIDPRSG EIIEAHVCWYHNVMNLLTKWYMTQCGPLDKRAQTMNFDEELMGNLIRFVSSHEVGHSLGL RHNMGASYATPVEKLRNKQWVEQHGHTVSIMDYARFNYVAQPEDSISPKGLFPRINDYDK WAIKWGYQYRPELKDEFEEKAVLRAETTETLRKNPQLWFGGEGRDEDPRSQMEDLGNDNV LANEYGIKNLKRVISNLLQWTYQEDGQYENLIEVYNTVRQQFKRYSNHVLKHIGGRYLNN LPDKKPFEIASAETQKKALGYLQRHVFDAPLWLYPSNITEKTGTNMDTEIMSLQKNVLAT LMSHDLLNRLYSDSFVSSKAYRLNDYLNDLFAIVWKPLNQDDGRQKRYRRELENSYLDIL NNLLNPIDTTNYNDWKKNNSDLIIYLLSHLDKIEKTLKQTDLSKSNIQTQQLHHLLNKIK QIRERRFTN Prediction of potential genes in microbial genomes Time: Sat May 28 06:50:25 2011 Seq name: gi|281305709|gb|ADEF01000025.1| Prevotella timonensis CRIS 5C-B1 contig00043, whole genome shotgun sequence Length of sequence - 687 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) Predicted protein(s) >gi|281305709|gb|ADEF01000025.1| GENE 1 223 - 477 126 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGVFSLTGWARLIRAEFLVLRVTQDDTMSSLASYKGLSPAMAERSSSFYSQSKYNIMVLL PHDCIATTVVWASPRSLATTKGII Prediction of potential genes in microbial genomes Time: Sat May 28 06:50:30 2011 Seq name: gi|281305707|gb|ADEF01000026.1| Prevotella timonensis CRIS 5C-B1 contig00081, whole genome shotgun sequence Length of sequence - 724 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 724 437 ## COG3436 Transposase and inactivated derivatives Predicted protein(s) >gi|281305707|gb|ADEF01000026.1| GENE 1 1 - 724 437 241 aa, chain - ## HITS:1 COG:MA1425 KEGG:ns NR:ns ## COG: MA1425 COG3436 # Protein_GI_number: 20090285 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Methanosarcina acetivorans str.C2A # 24 240 44 260 477 106 32.0 4e-23 AVEKLRAENRTLRKQLEKYEGPKKNSNNSSTPPSKEPMKDEVLRRTKSLRRKSGLKPGGQ PGHEGHLKKLIAAPDVIEECGSDFCRKCGRDLSDVEKKLDYVSQVVDLPTMAPVVTEYRH YKKVCTCGCCNKGYTPRKRGNHIVFGRNIRAIVTYLNVVQCVPYERLASLMAEIFSVHMS QGTIRNIVQEAMRKSKPAISLLEQMLKKSTVVGFDESGCYNNKKLNWAWIAQTAYITLCF R Prediction of potential genes in microbial genomes Time: Sat May 28 06:50:33 2011 Seq name: gi|281305693|gb|ADEF01000027.1| Prevotella timonensis CRIS 5C-B1 contig00072, whole genome shotgun sequence Length of sequence - 13235 bp Number of predicted genes - 16, with homology - 13 Number of transcription units - 10, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 585 430 ## gi|282880423|ref|ZP_06289131.1| hypothetical protein HMPREF9019_1850 2 2 Tu 1 . + CDS 922 - 1125 156 ## gi|298482354|ref|ZP_07000540.1| conserved hypothetical protein - Term 1530 - 1586 -0.3 3 3 Tu 1 . - CDS 1814 - 3505 1365 ## COG1649 Uncharacterized protein conserved in bacteria - Prom 3722 - 3781 10.2 + Prom 3539 - 3598 9.7 4 4 Op 1 . + CDS 3751 - 4236 759 ## BF3321 hypothetical protein 5 4 Op 2 . + CDS 4237 - 4848 484 ## COG0353 Recombinational DNA repair protein (RecF pathway) 6 4 Op 3 . + CDS 4917 - 5366 287 ## PRU_0896 hypothetical protein 7 4 Op 4 . + CDS 5376 - 6575 821 ## COG1216 Predicted glycosyltransferases 8 4 Op 5 . + CDS 6593 - 7111 163 ## PROTEIN SUPPORTED gi|116512426|ref|YP_809642.1| spermidine acetyltransferase + Term 7133 - 7179 -0.2 9 5 Tu 1 . - CDS 7174 - 7263 93 ## - Prom 7335 - 7394 1.9 + Prom 7170 - 7229 5.1 10 6 Tu 1 . + CDS 7293 - 8420 665 ## BF2244 putative hydrolase lipoprotein 11 7 Tu 1 . - CDS 8500 - 8628 62 ## - Prom 8650 - 8709 3.6 12 8 Op 1 . - CDS 8732 - 9109 181 ## gi|282880432|ref|ZP_06289140.1| conserved domain protein 13 8 Op 2 . - CDS 9127 - 10563 966 ## COG0486 Predicted GTPase - Prom 10710 - 10769 1.8 + Prom 10187 - 10246 5.8 14 9 Tu 1 . + CDS 10472 - 10642 61 ## + Term 10661 - 10703 -0.9 15 10 Op 1 . - CDS 10779 - 11654 661 ## COG2820 Uridine phosphorylase 16 10 Op 2 . - CDS 11668 - 12798 774 ## BVU_3646 hypothetical protein - Prom 12842 - 12901 9.6 Predicted protein(s) >gi|281305693|gb|ADEF01000027.1| GENE 1 3 - 585 430 194 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880423|ref|ZP_06289131.1| ## NR: gi|282880423|ref|ZP_06289131.1| hypothetical protein HMPREF9019_1850 [Prevotella timonensis CRIS 5C-B1] # 15 194 1 180 181 339 99.0 4e-92 MKRITIILFSLVLTLPIAAQKKTLELGIYGGLQTYTKIGNPYENSFSSGFGIGFLSKYYI SNRLFWTTDLFGATDDGTELKLTNIPEGNRILSMSRKDYSISTGFGFNVISTKQFNYYLQ LCGGIGIIDGSYEHFTPNNGTERIDIKHTSYIISPSTGIDFIVANHWKIGAGYTFRYLGD FDGSHSLFARITYV >gi|281305693|gb|ADEF01000027.1| GENE 2 922 - 1125 156 67 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|298482354|ref|ZP_07000540.1| ## NR: gi|298482354|ref|ZP_07000540.1| conserved hypothetical protein [Bacteroides sp. D22] # 1 56 1 56 67 90 92.0 3e-17 MSEFSLILVLQKKQENPTIDMAKIQIKFERLTPFEGLFSIMEQFDSTLSSVIRSSLVIPL VWRLLAI >gi|281305693|gb|ADEF01000027.1| GENE 3 1814 - 3505 1365 563 aa, chain - ## HITS:1 COG:BS_yngK KEGG:ns NR:ns ## COG: BS_yngK COG1649 # Protein_GI_number: 16078889 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 37 469 35 504 510 175 29.0 3e-43 MKRFLWILMWSFSTLFIYAQPNKISLQNSLSSSPKYEIRAVWLTTIGGLDWPHTYARTTY TVERQKQELRTLLDQYQGAGINTVLLQTRVRGTVIYPSAYEPWDGCLSGIPGKSPGYDAL AFIIDECHQRGMELHAWIVTIPVGKWRSLGCKSLQRKYPKMIKKDKDDGYMNPESSQTAT YLANLCEEITRNYDIDGIHLDYIRYPETWRIQINRATARQYITNIVQAIHDRVKRLKPWV KMSCSPIGKYNDLPRCWSHGWNAYSKVCQDAQTWLKEGLMDQLYPMMYFKGDQFYPFALN WKEESHGRMIVPGLGIYFMSPTERNWPLQVISQEMQVLRQYGMGHAYFRGKFLTDNVKGI YDFTSNDFCRYPALIPAMTWQHATPPLPPTQLKWDEKTSTLSWAGAKDRSNAPYLVYNIY ASRQVPVDIHDARNLIATRVQNTTQQLPKATALAYAVTAMDRYGNESDAIQSHKGNDANV RATTRLLYCDGKHVELPAKGQTLDATFVLIESLQGTMITTRIYQGKYADISTLPEGMYTL RSLDRYNHTHRLGIFMVKRNSLR >gi|281305693|gb|ADEF01000027.1| GENE 4 3751 - 4236 759 161 aa, chain + ## HITS:1 COG:no KEGG:BF3321 NR:ns ## KEGG: BF3321 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 161 1 160 160 116 43.0 3e-25 MKKLITMIAALLLTLTASAQFEQDKVYIGGALSGFNLSYSGLDKFNFGAQAHAGYLVEDN LMLLGTVNYQHNGNETVPDYISAGVGGRYYIVQNGIYLGANCKFVHAYHNYNDVMPGIEV GYAYFLSRTVTVEPAIYYDQSLKDHSNYSTIGFKLGIGVYL >gi|281305693|gb|ADEF01000027.1| GENE 5 4237 - 4848 484 203 aa, chain + ## HITS:1 COG:CAC0127 KEGG:ns NR:ns ## COG: CAC0127 COG0353 # Protein_GI_number: 15893423 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Clostridium acetobutylicum # 5 198 4 195 198 190 47.0 2e-48 MEQQYPSLLLEKAVSEFAKLPGIGRKTALRLVLNMLRRNVEEVEQFAQAISTMRHDVKYC RQCHNISDTDICPICADPRRDASTICVVENIQDVMAIENTMQYRGLYHVLGGLISPMDGI GPDQLEIQSLIDRVEAGGISEVILALNSTMEGDTTNFYISRKLNSSEVKLTVIARGIPIG DELEYTDEVTLGRSILNRIPFER >gi|281305693|gb|ADEF01000027.1| GENE 6 4917 - 5366 287 149 aa, chain + ## HITS:1 COG:no KEGG:PRU_0896 NR:ns ## KEGG: PRU_0896 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 4 146 1 141 141 117 43.0 1e-25 MKELNRVQKKLLAQFFVPLILALGLIVLFETETLVPGACTEQSQTEFIWLSVMEIVTICC IPLSLQLFKFKKIQAALQHPATSLKALLVWGSCRLAMLTIPMLVNTILYYLFMKVAFGYL AIILFLCLFFIFPSTDRCMQETKDVKQND >gi|281305693|gb|ADEF01000027.1| GENE 7 5376 - 6575 821 399 aa, chain + ## HITS:1 COG:CAC2321 KEGG:ns NR:ns ## COG: CAC2321 COG1216 # Protein_GI_number: 15895588 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Clostridium acetobutylicum # 1 285 1 288 298 204 38.0 2e-52 MHTLELSVIIVNYNVKYYVEQCLVSLQRALQGVEAEILVVDNASQDGSVAYLSDKFPHVT FISNNHNLGFARANNLAIRQSSGKYVLLLNPDTIVGEDTMRQLIDFMDGQSKLGAVGVRM ISTQGSDAKESRRGIPTPLTAFYKMCGLCARYPKHKRFARYYLGHLPWEKPAEIEIVSGA FFAVPRTSLEDIGLLDEDFFMYGEDIDLSYRLLKGGYHNWYLPLRILHYKGESTQKSSFR YVHVFYEAMLIFFQKHFGGMSLFLSLPIKLAIYFKATIALIQMQIGKTRKSLGLFHPQRY TPPFYVFIGSSESILKCQKIAERKGLKAKFIVATAAEYPEGHLAFELPQASEVCVVYDVE AYTFSQIFHIFSKGPQSHVHLGTFNPMNEIVITPSEILK >gi|281305693|gb|ADEF01000027.1| GENE 8 6593 - 7111 163 172 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116512426|ref|YP_809642.1| spermidine acetyltransferase [Lactococcus lactis subsp. cremoris SK11] # 6 160 12 162 212 67 25 5e-11 MANVVLRAMEPEDLDLLYQIENDIKLWNIGLTNVPYSRYVLHDYIATSSGDIYTDKQVRL IIENEERQTIGLVDIMNFNPQNRRAEMGIVVQEAFRQKGYGKDAIQKVMRYAKEVLHLHQ LYVVVNSSQKPTIRLFLRMGFKETCQLTDWLYDGEVYHDATLLQCCLSSENK >gi|281305693|gb|ADEF01000027.1| GENE 9 7174 - 7263 93 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYNSAMNRTSTKVLFYYQRNDPYNKKLMK >gi|281305693|gb|ADEF01000027.1| GENE 10 7293 - 8420 665 375 aa, chain + ## HITS:1 COG:no KEGG:BF2244 NR:ns ## KEGG: BF2244 # Name: not_defined # Def: putative hydrolase lipoprotein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 17 366 19 361 581 289 42.0 1e-76 MLKKLIWLLLIGYYFPTLYAQTVWYHPQEQKDMPISGRGWGNEIGKTYHRFPIRFKREVR ETLWNLSENSSGLYIDFTTDATDIAVKYTVTCLKSLNNVGTMATSGIDLYRRNAQGDWNF CSCFGSFNFGSSVSDTISYHYQNMIGKKDSVATFRLYLPLYNTVSSLRIGIPANKHLIFA PINSSNPIVVYGTSIAQGASASRPGMSWSNILQRKLDIPVFNLGFSGNGRLEPEVFRIMG ELTNARLFIIDCIPNMDSPERVDSIYPRIIAGVRYLRSKTLAPILLTEHCGYNNSLTQKG LREQVLKANSLLYKAYMELKRQGIKNLEYLTANEIGIINDNDSQIDGVHATDIGMRLYAN AYINKIRLMQGNKSK >gi|281305693|gb|ADEF01000027.1| GENE 11 8500 - 8628 62 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLSSKAFINCQFANHRPLKKHQKKLCIFPDCTYGASYTDVLH >gi|281305693|gb|ADEF01000027.1| GENE 12 8732 - 9109 181 125 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880432|ref|ZP_06289140.1| ## NR: gi|282880432|ref|ZP_06289140.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 125 1 125 125 186 100.0 5e-46 MYKIIASLYRYNMRGFNKSIPYFATLSNILVLFIFIYFLIIALLDTKSIFDIWHADSKGE MYLIGAFLVVPLYSLAWFLFPERKMKEHEALLTKKEYQLGLFFYVFLVIFLMVLLFIVAK QRNFS >gi|281305693|gb|ADEF01000027.1| GENE 13 9127 - 10563 966 478 aa, chain - ## HITS:1 COG:BS_thdF KEGG:ns NR:ns ## COG: BS_thdF COG0486 # Protein_GI_number: 16081154 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Bacillus subtilis # 15 478 2 459 459 293 37.0 4e-79 MVKDLDNQQHLQAENTICALATPAGGAIGIIRISGKDAIQIADKVFVTSKHKKLHDAKSH TILYGRIVDSQQETIDDVLVSVFRSPHSYTGEDSVEISCHGSRYIIKTILETLIKEGCRQ AAPGEYTQRAFFNGKLDLSQAEAVADLIASTNRATHHAAMSQLKGNFSNELATLRNELLK MTSLIELELDFSDHEDLEFANRDELLALAHKIKNRITTLAHSFETGNAIKQGVPVAIIGK TNVGKSTLLNQLLEEDKAIVSNIHGTTRDVIEDTTEINGITFRFIDTAGIRKTTDEIENL GIERTYQKIEEAKIVLWLTDEAPTKQEVDDLLKRIKDKSLICIQNKMDISPTPTLSVFEN ITNQKSNERNAKKRFSLQLSAKLGTNMDLLRSTLCQVAEVPEVTENDVIVTSTRHYNALL RSEESISRVIEGLELELSGDLLSEDLRLCLEHLAEITGGLITTHEVLNNIFQHFCIGK >gi|281305693|gb|ADEF01000027.1| GENE 14 10472 - 10642 61 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIPMAPPAGVAKAQMVFSACKCCWLSKSFTMFNAQFLLSTFNIYIPDLYFNMLKGA >gi|281305693|gb|ADEF01000027.1| GENE 15 10779 - 11654 661 291 aa, chain - ## HITS:1 COG:VNG0893G KEGG:ns NR:ns ## COG: VNG0893G COG2820 # Protein_GI_number: 15790029 # Func_class: F Nucleotide transport and metabolism # Function: Uridine phosphorylase # Organism: Halobacterium sp. NRC-1 # 16 267 10 227 273 95 30.0 9e-20 MEKKYFAESELIINKDSSVFHLHVKPEQLADKVILVGDPGRVSLVASHFDEKECDIHNRE FHTITGRYKNKRITVLSTGIGCDNIDIVVNELDALANIDFKTRYEKSPLKSLTLVRIGTC GGLQEYTPEGTYIASEKSIGFDGLLNYYAGRNEVCDLAFEEAFVKHMNWSAQKGAPYVID SDEETLNRIAGNDMVRGVTISCGGFFGPQGRVLRVPLADPHQNEKIENFEYNGHRITNFE MESSALHGLSKLMGHKAVTCCMVIANRRALKANVEYKNSIDGLIETVLDRI >gi|281305693|gb|ADEF01000027.1| GENE 16 11668 - 12798 774 376 aa, chain - ## HITS:1 COG:no KEGG:BVU_3646 NR:ns ## KEGG: BVU_3646 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 30 374 120 467 469 223 35.0 8e-57 MKYLLFLIILFTGYPTNTIADNSHVRAEVRPVQKEEALSHKHLFETMLSGTAKVLFVDSI VVDKNNFFSKIPLSSDAGTLEFIDKRFTYTNELKNHRIYADGDSIHGFHLFSTDYLGDSW SQPKQLKELDEEVKDAQFPFLLSDGVTLFFSAKGDKSIGGYDIFMTLFNEESGTYYKPEN YGLPFNSTANDYLLAIDDVHSLGWLVSDRYQPKGKVCIYTFVPTMPRQNFTADNIADKQL EAYAKLTSIQETWKFGNREAALQRLKLLTNERQQTTEKQEFYFPINDHTVYQSINDFRSE KTKKLYQQLLELKKQLSANEETLSQLRSQYQSSNMSGKLQMRPNLLKAEKAIQSQRIEIM NFAKQLRNEENRLLTQ Prediction of potential genes in microbial genomes Time: Sat May 28 06:52:14 2011 Seq name: gi|281305539|gb|ADEF01000028.1| Prevotella timonensis CRIS 5C-B1 contig00048, whole genome shotgun sequence Length of sequence - 214317 bp Number of predicted genes - 161, with homology - 149 Number of transcription units - 87, operones - 43 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 409 - 468 3.1 1 1 Tu 1 . + CDS 496 - 1851 515 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 - Term 1881 - 1950 11.4 2 2 Op 1 . - CDS 1972 - 3462 1339 ## COG0215 Cysteinyl-tRNA synthetase - Prom 3516 - 3575 3.1 - Term 3536 - 3587 3.2 3 2 Op 2 . - CDS 3597 - 4403 564 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 4504 - 4563 6.7 + Prom 4379 - 4438 8.1 4 3 Tu 1 . + CDS 4627 - 5847 1187 ## COG1488 Nicotinic acid phosphoribosyltransferase + Term 5879 - 5926 15.3 5 4 Tu 1 . - CDS 6207 - 7067 834 ## COG1360 Flagellar motor protein - Prom 7207 - 7266 9.9 - Term 7390 - 7426 3.3 6 5 Tu 1 . - CDS 7506 - 8456 597 ## COG0739 Membrane proteins related to metalloendopeptidases 7 6 Op 1 . - CDS 8844 - 10946 1608 ## COG1200 RecG-like helicase 8 6 Op 2 . - CDS 10943 - 11617 290 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 9 7 Tu 1 . - CDS 11720 - 12289 624 ## COG0693 Putative intracellular protease/amidase - Prom 12522 - 12581 6.5 + Prom 12744 - 12803 6.4 10 8 Op 1 . + CDS 13029 - 13916 600 ## COG0061 Predicted sugar kinase 11 8 Op 2 . + CDS 13936 - 15606 185 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 12 8 Op 3 3/0.043 + CDS 15613 - 16167 454 ## COG0526 Thiol-disulfide isomerase and thioredoxins 13 8 Op 4 36/0.000 + CDS 16164 - 16883 334 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 14 8 Op 5 10/0.000 + CDS 16903 - 18165 1332 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 15 8 Op 6 13/0.000 + CDS 18169 - 19413 1325 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 16 8 Op 7 . + CDS 19507 - 20610 1207 ## COG0845 Membrane-fusion protein + Term 20790 - 20842 15.2 - Term 20784 - 20824 6.8 17 9 Tu 1 . - CDS 20869 - 21126 117 ## - Prom 21186 - 21245 6.6 + Prom 21118 - 21177 1.7 18 10 Tu 1 . + CDS 21204 - 24908 3991 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain + Prom 24919 - 24978 2.9 19 11 Op 1 7/0.000 + CDS 24999 - 25589 590 ## COG2059 Chromate transport protein ChrA 20 11 Op 2 . + CDS 25591 - 26166 444 ## COG2059 Chromate transport protein ChrA + Prom 26373 - 26432 4.7 21 12 Tu 1 . + CDS 26452 - 27366 432 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 27517 - 27576 4.2 22 13 Tu 1 . + CDS 27660 - 29078 1728 ## COG1027 Aspartate ammonia-lyase + Term 29105 - 29137 -0.8 - Term 29172 - 29239 18.3 23 14 Op 1 . - CDS 29295 - 31583 1451 ## gi|282880459|ref|ZP_06289166.1| putative lipoprotein 24 14 Op 2 . - CDS 31608 - 31769 182 ## - Prom 31905 - 31964 11.9 - Term 32247 - 32286 7.4 25 15 Tu 1 . - CDS 32326 - 34092 1176 ## COG0366 Glycosidases - Prom 34117 - 34176 5.0 + Prom 33950 - 34009 2.1 26 16 Tu 1 . + CDS 34084 - 34197 65 ## - Term 34126 - 34166 3.4 27 17 Op 1 . - CDS 34202 - 35791 1605 ## BF3305 hypothetical protein 28 17 Op 2 . - CDS 35819 - 37438 1449 ## BF3306 hypothetical protein 29 17 Op 3 . - CDS 37452 - 40451 2560 ## BF3307 hypothetical protein - Prom 40657 - 40716 5.1 30 18 Tu 1 . + CDS 40786 - 41811 759 ## COG1609 Transcriptional regulators + Prom 41931 - 41990 5.0 31 19 Tu 1 . + CDS 42088 - 43404 1062 ## COG0477 Permeases of the major facilitator superfamily + Term 43505 - 43551 2.1 - Term 43496 - 43535 7.4 32 20 Op 1 . - CDS 43661 - 45433 992 ## gi|282880466|ref|ZP_06289173.1| putative lipoprotein 33 20 Op 2 . - CDS 45457 - 45654 279 ## gi|282880467|ref|ZP_06289174.1| hypothetical protein HMPREF9019_1385 - Prom 45839 - 45898 5.8 + Prom 45990 - 46049 4.5 34 21 Tu 1 . + CDS 46091 - 46924 560 ## BF1989 AraC family transcriptional regulator + Term 46942 - 46976 -0.8 + Prom 46943 - 47002 6.7 35 22 Tu 1 . + CDS 47064 - 49478 1594 ## PRU_1227 putative thiol protease/hemagglutinin PrtT + Term 49501 - 49531 2.0 + Prom 50007 - 50066 2.8 36 23 Op 1 . + CDS 50109 - 52814 2129 ## COG1640 4-alpha-glucanotransferase 37 23 Op 2 . + CDS 52884 - 55016 1783 ## PRU_2750 alpha-glucosidase 38 23 Op 3 . + CDS 55035 - 56987 1809 ## COG1523 Type II secretory pathway, pullulanase PulA and related glycosidases + Prom 56989 - 57048 5.3 39 24 Op 1 . + CDS 57130 - 57519 244 ## DVU2021 hypothetical protein + Prom 57594 - 57653 4.5 40 24 Op 2 . + CDS 57787 - 59706 2181 ## COG0366 Glycosidases + Term 59719 - 59778 17.1 41 25 Op 1 26/0.000 - CDS 59787 - 60563 614 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 42 25 Op 2 . - CDS 60564 - 61838 798 ## COG0438 Glycosyltransferase - Prom 61858 - 61917 2.7 + Prom 62264 - 62323 9.6 43 26 Tu 1 . + CDS 62372 - 63232 207 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Term 63089 - 63119 -0.3 44 27 Op 1 . - CDS 63271 - 65817 2192 ## Coch_0557 hypothetical protein 45 27 Op 2 . - CDS 65841 - 67904 1991 ## COG0143 Methionyl-tRNA synthetase - Prom 68131 - 68190 8.2 - Term 68303 - 68336 0.0 46 28 Op 1 . - CDS 68508 - 69692 784 ## COG2814 Arabinose efflux permease 47 28 Op 2 . - CDS 69782 - 71323 1458 ## COG0606 Predicted ATPase with chaperone activity 48 28 Op 3 . - CDS 71334 - 72329 631 ## PRU_2389 putative lipoprotein 49 28 Op 4 . - CDS 72344 - 74017 1701 ## PRU_2390 hypothetical protein - Prom 74092 - 74151 3.1 + Prom 73799 - 73858 3.3 50 29 Tu 1 . + CDS 73920 - 74105 116 ## - TRNA 74053 - 74138 69.6 # Leu TAA 0 0 51 30 Tu 1 . - CDS 74161 - 74373 132 ## - Prom 74593 - 74652 6.3 - TRNA 74241 - 74313 86.8 # Gly GCC 0 0 + Prom 74408 - 74467 8.2 52 31 Tu 1 . + CDS 74624 - 76672 1700 ## COG4232 Thiol:disulfide interchange protein + Term 76683 - 76723 -0.7 53 32 Tu 1 . + CDS 76817 - 78109 1116 ## COG3681 Uncharacterized conserved protein - Term 78300 - 78336 0.4 54 33 Tu 1 . - CDS 78384 - 80525 1701 ## COG3537 Putative alpha-1,2-mannosidase - Prom 80587 - 80646 1.8 + Prom 80459 - 80518 4.3 55 34 Tu 1 . + CDS 80749 - 81714 450 ## Coch_1292 bile acid:sodium symporter 56 35 Op 1 . - CDS 81898 - 82185 180 ## gi|282880489|ref|ZP_06289196.1| conserved hypothetical protein 57 35 Op 2 . - CDS 82210 - 82773 308 ## PRU_2392 putative lipoprotein 58 35 Op 3 . - CDS 82766 - 83179 467 ## PRU_2394 hypothetical protein 59 35 Op 4 . - CDS 83242 - 83880 660 ## COG0461 Orotate phosphoribosyltransferase - Prom 83981 - 84040 6.5 60 36 Op 1 . - CDS 85062 - 85778 694 ## COG1040 Predicted amidophosphoribosyltransferases 61 36 Op 2 . - CDS 85750 - 86238 392 ## PRU_2397 regulatory protein RecX 62 36 Op 3 . - CDS 86262 - 87113 288 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase - Prom 87141 - 87200 2.0 + Prom 86949 - 87008 3.5 63 37 Tu 1 . + CDS 87135 - 88079 681 ## COG0117 Pyrimidine deaminase - Term 88020 - 88063 1.2 64 38 Tu 1 . - CDS 88229 - 91957 2481 ## COG4724 Endo-beta-N-acetylglucosaminidase D - Prom 91977 - 92036 4.3 - Term 91984 - 92023 5.1 65 39 Op 1 . - CDS 92038 - 93834 1362 ## BDI_3380 hypothetical protein 66 39 Op 2 . - CDS 93840 - 97493 2514 ## BF4132 putative outer membrane protein 67 39 Op 3 . - CDS 97576 - 98559 623 ## COG3712 Fe2+-dicitrate sensor, membrane component - Prom 98593 - 98652 5.2 + Prom 99139 - 99198 5.8 68 40 Op 1 . + CDS 99440 - 100060 358 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 69 40 Op 2 . + CDS 100081 - 100656 353 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog + Prom 100711 - 100770 2.3 70 41 Op 1 . + CDS 100802 - 102118 603 ## COG3669 Alpha-L-fucosidase 71 41 Op 2 . + CDS 102169 - 103056 575 ## COG3712 Fe2+-dicitrate sensor, membrane component + Prom 103079 - 103138 5.2 72 42 Op 1 . + CDS 103158 - 106610 2142 ## BVU_1043 hypothetical protein 73 42 Op 2 . + CDS 106625 - 108673 1510 ## BVU_1044 hypothetical protein 74 42 Op 3 . + CDS 108703 - 110244 1072 ## COG3119 Arylsulfatase A and related enzymes + Term 110301 - 110355 17.0 - Term 110291 - 110340 14.3 75 43 Op 1 . - CDS 110371 - 111564 1154 ## COG0426 Uncharacterized flavoproteins 76 43 Op 2 . - CDS 111612 - 112556 631 ## COG0524 Sugar kinases, ribokinase family - Prom 112704 - 112763 6.1 + Prom 112564 - 112623 6.5 77 44 Tu 1 . + CDS 112728 - 113963 940 ## COG0612 Predicted Zn-dependent peptidases - Term 113986 - 114044 14.2 78 45 Op 1 . - CDS 114076 - 114627 518 ## BF2283 hypothetical protein - Prom 114693 - 114752 3.5 - Term 114768 - 114806 0.1 79 45 Op 2 . - CDS 114807 - 115436 433 ## PRU_2447 hypothetical protein 80 45 Op 3 2/0.043 - CDS 115468 - 115929 188 ## COG0681 Signal peptidase I 81 45 Op 4 . - CDS 115945 - 117390 1167 ## COG0681 Signal peptidase I 82 45 Op 5 . - CDS 117435 - 118190 719 ## COG0289 Dihydrodipicolinate reductase - Prom 118256 - 118315 5.8 83 46 Op 1 . + CDS 118621 - 118929 68 ## 84 46 Op 2 . + CDS 118766 - 119275 492 ## PGN_0319 probable RNA polymerase sigma-70 factor ECF subfamily 85 46 Op 3 . + CDS 119148 - 119741 307 ## BF1648 hypothetical protein 86 46 Op 4 . + CDS 119731 - 120183 363 ## BT_0324 hypothetical protein 87 46 Op 5 . + CDS 120223 - 121062 574 ## BF1646 hypothetical protein + Prom 121123 - 121182 4.5 88 47 Op 1 . + CDS 121202 - 122512 731 ## PRU_2464 hypothetical protein 89 47 Op 2 . + CDS 122573 - 122971 393 ## PRU_2385 hypothetical protein 90 47 Op 3 . + CDS 122974 - 124107 1104 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 124128 - 124187 3.5 91 48 Op 1 . + CDS 124212 - 125195 488 ## PROTEIN SUPPORTED gi|145640649|ref|ZP_01796232.1| ribosomal protein L11 methyltransferase 92 48 Op 2 . + CDS 125232 - 127181 1480 ## COG3525 N-acetyl-beta-hexosaminidase + Term 127412 - 127475 7.1 93 49 Tu 1 . + CDS 127620 - 128747 922 ## PGN_1635 hypothetical protein - Term 128872 - 128916 -0.7 94 50 Tu 1 . - CDS 128969 - 129766 565 ## COG1397 ADP-ribosylglycohydrolase - Prom 129963 - 130022 4.4 - TRNA 130115 - 130186 48.3 # Arg CCT 0 0 - Term 130849 - 130885 0.2 95 51 Op 1 . - CDS 131075 - 131929 602 ## COG0796 Glutamate racemase 96 51 Op 2 . - CDS 131954 - 132466 503 ## PRU_2286 hypothetical protein - Prom 132548 - 132607 5.3 - Term 132572 - 132620 1.2 97 52 Op 1 . - CDS 132735 - 133235 631 ## PRU_2285 OmpH/HlpA family protein 98 52 Op 2 . - CDS 133266 - 133778 618 ## PRU_2284 OmpH/HlpA family protein 99 53 Op 1 1/0.087 - CDS 133879 - 136494 2643 ## COG4775 Outer membrane protein/protective antigen OMA87 100 53 Op 2 . - CDS 136491 - 137252 554 ## COG0020 Undecaprenyl pyrophosphate synthase 101 53 Op 3 . - CDS 137273 - 137956 712 ## PRU_2281 hypothetical protein 102 53 Op 4 . - CDS 137975 - 139381 1001 ## BVU_0865 hypothetical protein + TRNA 140442 - 140515 51.3 # Gln TTG 0 0 - Term 140508 - 140539 2.7 103 54 Tu 1 . - CDS 140565 - 140837 500 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 140887 - 140946 5.4 + Prom 140817 - 140876 5.3 104 55 Op 1 . + CDS 141049 - 141966 745 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 105 55 Op 2 . + CDS 142042 - 143058 628 ## PRU_2304 endonuclease/exonuclease/phosphatase family protein + Prom 143089 - 143148 6.9 106 56 Tu 1 . + CDS 143177 - 146206 2887 ## COG0342 Preprotein translocase subunit SecD + Term 146241 - 146285 11.5 + Prom 146313 - 146372 5.3 107 57 Op 1 . + CDS 146547 - 148376 1048 ## COG1305 Transglutaminase-like enzymes, putative cysteine proteases 108 57 Op 2 . + CDS 148389 - 150560 1829 ## gi|282880542|ref|ZP_06289249.1| hypothetical protein HMPREF9019_1464 109 58 Tu 1 . - CDS 151314 - 153164 1637 ## COG2217 Cation transport ATPase - Prom 153189 - 153248 8.1 + Prom 153162 - 153221 6.6 110 59 Op 1 . + CDS 153302 - 154336 1070 ## COG2255 Holliday junction resolvasome, helicase subunit 111 59 Op 2 . + CDS 154353 - 154826 294 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 112 59 Op 3 . + CDS 154874 - 155287 504 ## COG0319 Predicted metal-dependent hydrolase + Term 155390 - 155443 13.1 - Term 155377 - 155430 16.9 113 60 Op 1 2/0.043 - CDS 155452 - 157023 1381 ## COG0793 Periplasmic protease 114 60 Op 2 . - CDS 157071 - 159083 1984 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 159108 - 159167 3.1 115 61 Tu 1 . - CDS 159270 - 160421 1143 ## PRU_2474 hypothetical protein - Prom 160441 - 160500 9.0 116 62 Tu 1 . - CDS 160550 - 160678 67 ## - Prom 160730 - 160789 6.4 - Term 161065 - 161119 -0.0 117 63 Op 1 . - CDS 161285 - 162541 847 ## PRU_2473 hypothetical protein 118 63 Op 2 . - CDS 162588 - 163262 400 ## COG2173 D-alanyl-D-alanine dipeptidase - Prom 163325 - 163384 2.5 119 64 Tu 1 . - CDS 163400 - 164968 886 ## BVU_3872 hypothetical protein - Prom 165027 - 165086 3.1 120 65 Op 1 . - CDS 165149 - 166450 1350 ## COG0162 Tyrosyl-tRNA synthetase 121 65 Op 2 . - CDS 166510 - 166728 140 ## COG0759 Uncharacterized conserved protein 122 65 Op 3 . - CDS 166749 - 167159 351 ## BVU_1188 ribonuclease P (EC:3.1.26.5) 123 65 Op 4 . - CDS 167166 - 167912 638 ## PRU_2296 uroporphyrinogen-III synthase (EC:4.2.1.75) 124 65 Op 5 . - CDS 167924 - 168946 621 ## PRU_2295 hypothetical protein 125 65 Op 6 . - CDS 168996 - 170252 1332 ## COG0192 S-adenosylmethionine synthetase - Prom 170309 - 170368 5.5 - Term 170380 - 170428 12.2 126 66 Tu 1 . - CDS 170451 - 173273 2922 ## COG0612 Predicted Zn-dependent peptidases - Prom 173337 - 173396 8.6 127 67 Tu 1 . + CDS 173729 - 175183 1053 ## COG3119 Arylsulfatase A and related enzymes + Term 175207 - 175270 12.2 - Term 175261 - 175294 -0.6 128 68 Tu 1 . - CDS 175370 - 177304 2106 ## COG0513 Superfamily II DNA and RNA helicases - Prom 177461 - 177520 4.2 + Prom 177425 - 177484 6.0 129 69 Tu 1 . + CDS 177545 - 178426 773 ## COG0524 Sugar kinases, ribokinase family + Term 178455 - 178503 15.6 - Term 178438 - 178494 19.0 130 70 Op 1 . - CDS 178522 - 179562 1090 ## COG2855 Predicted membrane protein - Prom 179586 - 179645 4.9 - Term 179592 - 179622 -0.3 131 70 Op 2 . - CDS 179671 - 180621 952 ## COG4974 Site-specific recombinase XerD - Prom 180832 - 180891 5.3 + Prom 180575 - 180634 5.1 132 71 Tu 1 . + CDS 180739 - 181146 258 ## COG0757 3-dehydroquinate dehydratase II + Prom 181169 - 181228 1.9 133 72 Tu 1 . + CDS 181286 - 181927 606 ## COG4122 Predicted O-methyltransferase + Term 181956 - 181987 0.2 134 73 Tu 1 . - CDS 181962 - 182918 462 ## gi|282880567|ref|ZP_06289274.1| putative membrane protein - Prom 182949 - 183008 5.6 + Prom 182932 - 182991 5.7 135 74 Op 1 . + CDS 183011 - 183346 344 ## COG0858 Ribosome-binding factor A 136 74 Op 2 . + CDS 183385 - 184623 1048 ## COG4591 ABC-type transport system, involved in lipoprotein release, permease component + Term 184667 - 184703 1.2 - Term 185197 - 185240 11.0 137 75 Op 1 . - CDS 185254 - 188796 3413 ## COG3525 N-acetyl-beta-hexosaminidase 138 75 Op 2 . - CDS 188894 - 192118 2372 ## COG2273 Beta-glucanase/Beta-glucan synthetase 139 75 Op 3 . - CDS 192206 - 193753 1294 ## COG3669 Alpha-L-fucosidase - Prom 193799 - 193858 7.7 + Prom 193758 - 193817 5.6 140 76 Tu 1 . + CDS 193969 - 194166 135 ## - Term 193993 - 194032 6.0 141 77 Tu 1 . - CDS 194185 - 194943 822 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit - Prom 194975 - 195034 3.4 142 78 Op 1 . - CDS 195073 - 195432 247 ## PROTEIN SUPPORTED gi|194334574|ref|YP_002016434.1| S23 ribosomal protein - Prom 195452 - 195511 3.4 143 78 Op 2 . - CDS 195527 - 197506 2397 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 144 78 Op 3 . - CDS 197541 - 198227 425 ## PRU_2433 succinate dehydrogenase/fumarate reductase cytochrome b subunit - Prom 198255 - 198314 6.1 - Term 198769 - 198825 5.9 145 79 Tu 1 . - CDS 198955 - 199197 94 ## - Prom 199269 - 199328 6.9 + Prom 199293 - 199352 5.1 146 80 Op 1 . + CDS 199377 - 201248 1284 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division + Term 201275 - 201312 -0.6 + Prom 201250 - 201309 1.8 147 80 Op 2 . + CDS 201329 - 201859 549 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins + Term 201893 - 201940 -0.5 148 81 Op 1 . + CDS 202051 - 203892 1140 ## COG0322 Nuclease subunit of the excinuclease complex 149 81 Op 2 . + CDS 203873 - 204088 97 ## + Prom 204090 - 204149 4.4 150 82 Op 1 . + CDS 204170 - 204598 151 ## 151 82 Op 2 . + CDS 204640 - 205080 464 ## Fisuc_1691 hypothetical protein + Term 205139 - 205185 8.2 + Prom 205465 - 205524 2.3 152 83 Op 1 . + CDS 205544 - 205996 542 ## COG1490 D-Tyr-tRNAtyr deacylase 153 83 Op 2 . + CDS 206027 - 206356 378 ## COG1694 Predicted pyrophosphatase 154 83 Op 3 . + CDS 206353 - 207303 982 ## COG0274 Deoxyribose-phosphate aldolase - Term 207333 - 207375 9.6 155 84 Op 1 . - CDS 207394 - 208758 1010 ## COG1073 Hydrolases of the alpha/beta superfamily 156 84 Op 2 . - CDS 208836 - 209813 874 ## COG0142 Geranylgeranyl pyrophosphate synthase - Prom 209940 - 209999 5.2 + Prom 209830 - 209889 6.4 157 85 Op 1 . + CDS 209966 - 212728 2303 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 158 85 Op 2 . + CDS 212766 - 212963 220 ## gi|282880587|ref|ZP_06289294.1| prevent-host-death family protein + Term 213057 - 213109 10.1 - Term 212924 - 212971 1.1 159 86 Tu 1 . - CDS 213121 - 213372 237 ## gi|282880588|ref|ZP_06289295.1| hypothetical protein HMPREF9019_1510 - Prom 213529 - 213588 2.7 + Prom 213395 - 213454 5.3 160 87 Op 1 . + CDS 213661 - 213831 109 ## 161 87 Op 2 . + CDS 213779 - 214316 344 ## EF2248 hypothetical protein Predicted protein(s) >gi|281305539|gb|ADEF01000028.1| GENE 1 496 - 1851 515 451 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 1 439 1 426 451 202 28 7e-51 MKKLFIETYGCQMNVADSEVVASVMQMAGYELCEQEEEADAIFLNTCSVRENAENKIYNR LDALHAERKKGRNLILGVLGCMAERVKDDLLNNHHTDLVCGPDSYLNLPDMMAQAETGNK AIDIELSKTETYKDVVPQRLMIGKVSGFVSIMRGCNNFCHYCIVPYTRGRERSRDIESIL REVRDLRDKHYKEITLLGQNVNSYCFTVPERQLDNGETIAAHTIDFPQLLRRVAHEVPDI RIRFTSSHPKDMSDDTLHVIAEEPNVCKHIHLPVQSGSNKILKLMNRKYTVEWYMDRIRA IQRIIPDCGISTDIFVGYHGETEEDHQLSLQLMRTVGYDSAFMFKYSERPGTYASKHLPD NVPEEEKIRRLNEMIHLQTELSAISNKKDEGKEFEVLVEGFSKRSREQLCGRTEQNKMVV LDKGKHHIGETVRVRITRSTSATLFGEEVTK >gi|281305539|gb|ADEF01000028.1| GENE 2 1972 - 3462 1339 496 aa, chain - ## HITS:1 COG:DR1670 KEGG:ns NR:ns ## COG: DR1670 COG0215 # Protein_GI_number: 15806673 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Deinococcus radiodurans # 7 493 54 531 532 440 46.0 1e-123 MEQKLFVYNTLTRKKELFEPLHAPNVGMYVCGPTVYGDPHLGHARPSITFDILFRYLKHL GYKVRYVRNITDVGHLEHDADEGDDKIEKKARLEQLEPMEIAQHYTNRYHAAMEALNVLP PSIEPHATGHIIEQEELVKQILANGYAYESNGSVYFDIEKYNKDHHYGILSGRNLDDVIN NSRELDGVGEKRNQVDFALWKRAMPEHIMRWPSPWSDGFPGWHCECTAMGRKYLGNHFDI HGGGMDLVFPHHECEIAQAVASQGDQMVRYWMHNNMITINGKKMGKSLGNFITLEQFFTG EHDSLEQPYSPMTIRFFILSAHYRGTVDFSNEALQASQKGLERLMNGVHDLERLQAAATS NEATHKFVAELRQQCYDAMNDDLQTPVVISKLFEACHIINTLLDHTGSIDQKDLDELKEV MHLFAFDLLGLKNEQGNDNDAREAAYGKVVDMVLELRAKAKQAKDWATSDQIRDALAANG FEVKDTKDGVTWKLNR >gi|281305539|gb|ADEF01000028.1| GENE 3 3597 - 4403 564 268 aa, chain - ## HITS:1 COG:lin1028 KEGG:ns NR:ns ## COG: lin1028 COG0561 # Protein_GI_number: 16800097 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Listeria innocua # 6 263 3 256 256 140 34.0 3e-33 MNHKIKALFFDIDGTLVSFQTHQIPASTVQALEEAKANGVQVYISTGRPLSLITVLGSIQ HLIDGYITTNGAYCFVGNHDVCQHAIPRESVDFVISQAIEQQFCCVLVGTKHLCVFQQDE TFNQVFLDLLKVQGIDKAVSQDVVLQEPILQLSPFITQQQETELMSKLPTCQSGRWHPAF TDITSLSADKGQGLQAMANYLGLSLNETMAFGDGGNDITIIQQAGIGVAMGNAVPELKQV ADYITTSVDEHGVREALIHYGIIAKDAL >gi|281305539|gb|ADEF01000028.1| GENE 4 4627 - 5847 1187 406 aa, chain + ## HITS:1 COG:PA4376 KEGG:ns NR:ns ## COG: PA4376 COG1488 # Protein_GI_number: 15599572 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Pseudomonas aeruginosa # 2 368 8 363 398 220 35.0 4e-57 MKQIISHLTDNDAYTFSCQYYILQKYPRAEVEYNFFDRNDTIYPEGFSGLVEEQLGYMPQ VMITQEEISFMKRRMYYLPEWYFTFLRGYRFNPHEVTVTQDEAGHLQITVRGKWYSAIMW EMPILATISELMHYLRGDFERYDLETERKRAIEKTREILKNGIVLGDMGTRRRFSFDHHD MVVKVMKETYEQGGYHDEDGYHKWTGKLTGTSNVYLAMKHDLTPIGTMSHQLIQFEENIS GVFECNFNVMKKFSDVYDGDNGIYLYDCFGDKVFFNNLSKRMAMMFTGLRVDSGDEQEQT EKIIEKYKSLGINPKTKQVVYSNGLDIKKAIKIHEYVNGRIQDSYGMGTFLTCDVENVEP MNIVVKLTKSRITEKREWHDCVKLSCDKGKTVGNPEKCAYLLKQLA >gi|281305539|gb|ADEF01000028.1| GENE 5 6207 - 7067 834 286 aa, chain - ## HITS:1 COG:PA1461 KEGG:ns NR:ns ## COG: PA1461 COG1360 # Protein_GI_number: 15596658 # Func_class: N Cell motility # Function: Flagellar motor protein # Organism: Pseudomonas aeruginosa # 146 271 127 245 296 82 38.0 8e-16 MMKKHGLIFPLLAAALLVSSCASKKDLENCQSENRELTSNYQTAKEQLAASQARVTALEE QLSQQKRDYAALQNSLDKSLLNTKSNNINISKLVDQINESNQYIRHLVEVKSKSDSLNMV LTNNLTRSLSREELKEVDVQVLKGVVYISLADNMLYKTASYEINDRAAETLSKIAKIIMD YKEYDVLVEGNTDNVPVNPNSPLMKNIRNNWDLSTLRASSVVQYLQKNYGVDPKRMTAGG RGEYNPLTSNNTELGRQRNRRTQIIITPKLDQFMDLIDEAPENTKE >gi|281305539|gb|ADEF01000028.1| GENE 6 7506 - 8456 597 316 aa, chain - ## HITS:1 COG:slr0993 KEGG:ns NR:ns ## COG: slr0993 COG0739 # Protein_GI_number: 16331215 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane proteins related to metalloendopeptidases # Organism: Synechocystis # 97 208 599 711 715 105 48.0 8e-23 MRLLNKIKTFAFITLLAAFAQPTIAQDLLARQAPVDRKMKAVDTLLLHNIIEKENLESPA AQLYEEWDNRYAHRQTALPDSFRIDLRHFCMPTPSRVITSNFGTRWGRQHKGLDIKVYIG DTIRAAFSGKVRIVRYEARGYGNYIVIRHGNGLETIYGHLSKQLVSENQEVRAGDVIGLG GNTGRSTGSHLHFETRLCGVALNPALLFDFRAQDVTGDYYTFRNNSYQRESTEANRLRGK IGNGGYTPDQVRGGVASRREDVEAFNTVQVQYHKVQAGETLNSIARKRGVTVEQICRLSH ISKSDKIKPGRILRYS >gi|281305539|gb|ADEF01000028.1| GENE 7 8844 - 10946 1608 700 aa, chain - ## HITS:1 COG:FN1660 KEGG:ns NR:ns ## COG: FN1660 COG1200 # Protein_GI_number: 19704981 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Fusobacterium nucleatum # 25 670 29 664 689 486 43.0 1e-137 MTSILSQDIKYLTGVGPKRKEILEKELQISTWGDLLEYYPYKYVDRSRIYRIGELRGDLP FVQLKGKILSFEEFAMGAHRKRVVAHFSDGTGVVDLVWFRGAQYVYKTYKVNEEYIVFGR PSIYGGRYQFAHPDIDKVTDVQLSEMGMQPYYMTTERMKKMGLTSRSLEKLTKTLVEKLF EQTISETLPPYIIGPLHLISRTEALHKIHYPKSLEDVQRAQVRLKFEELFYVQLNILRYA HDQRRKYRGYVFTQVGSLFHFFYHNNLPFELTNAQKRVMHEIRNDMATGQQMNRLVQGDV GSGKTLVALMSMLIAIGNGFQACMMAPTEILAEQHFATIRKFLRQMPVRIELLTGIVKGK KREEILNGLLTGEVQILVGTHAVIEDNVQFSRLGLAVVDEQHRFGVAQRAKLWGKSQQPP HILVMTATPIPRTLAMTIYGDLDVSVIDELPPGRKPIQTIHKYDNQLTSLYQGIRQQIRQ GRQVYIVFPLITESEKIDLKNLEAGYESLCSIFPDMKLSKVHGKMKPKEKDLEMQKFSKG ETQILVATTVIEVGVDVPNASVMVILDAQRFGLSQLHQLRGRVGRGADQSYCILVTNHKL TQETRKRIDIMCQTNDGFQIAEADLKLRGPGDLEGTQQSGIAFDLKIADIARDGQLIQLA RDEAQKIINDDPDCEKSQYSILWNRLNELRKSNVNWAAIS >gi|281305539|gb|ADEF01000028.1| GENE 8 10943 - 11617 290 224 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 5 221 7 223 234 116 34 9e-25 MRFIIIVAGGKGLRMGGDIPKQFRIVGEKPILMHTIERFHQYDAEMGIIVVLPHSQQVYW RQLCDEYNFHVGHTVVNGGASRFESAKNGLSVIPEEVCGTVGIHDGVRPFVSTEVINRCY LTAQKCGAAIPVLPVTDTLRHISADGNSKNVLRSDYRIVQTPQVFDIALLKKAFAQPEQA AFTDDASVVEAMGQTVEMVEGNRENIKITTPFDIKLAELLIPQT >gi|281305539|gb|ADEF01000028.1| GENE 9 11720 - 12289 624 189 aa, chain - ## HITS:1 COG:SP0804 KEGG:ns NR:ns ## COG: SP0804 COG0693 # Protein_GI_number: 15900697 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Streptococcus pneumoniae TIGR4 # 1 173 1 169 184 127 37.0 2e-29 MAKVYEFLATGFEEVEALLPVDILRRAGVEIKTVSVTGDTWVTSSHGVTIQADLKFEDIR HFDDVDMLLLPGGMPGATNLNEHAGVREALLAHHAKGKRIGAICAGPMVLGSLGLLKGRK ATCYPGFEKYMEGADYTAELFTVDGNIITGEGPAATFPYAFEILKGFVGEAETKDLQKQM RFTHLMETK >gi|281305539|gb|ADEF01000028.1| GENE 10 13029 - 13916 600 295 aa, chain + ## HITS:1 COG:MTH872 KEGG:ns NR:ns ## COG: MTH872 COG0061 # Protein_GI_number: 15678892 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Methanothermobacter thermautotrophicus # 25 291 21 277 283 147 29.0 2e-35 MPEPKLRFALFGNEYQPEKTAFFLRIIEELQAHGAHVSIDSTFYDFLCQDVHFKSETVQR FEGQDFDADFVISVGGDGTFLKAARRVGIKQIPLIGVNTGRLGFLANILPSELKEAVADI YAHHYELERHSVIQLETNGEPLDINPYALNDIAILKRDNAAMITIRACVNDDYLVTYQAD GLVIATPTGSTAYNLSNGGPIMVPSTSNLCLTPVAPHSLNIRPIVINDNNVITLTVESRS HNFLAAIDGRSTKLGEHTQLTIRKAPFATLFVKRFGQRYFSTLREKMMWGADTRG >gi|281305539|gb|ADEF01000028.1| GENE 11 13936 - 15606 185 556 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 347 544 279 483 563 75 30 1e-12 MNIRQWFKIPTPKYSARVIFKWLWRAWRGNQLQAILNAAIGLLSVVVSLAQVWAVQHAID VASGHAEGSIYWSVGVMAMLVLCGFALRICSIWVRNILGIKAQNRMQQRMLDRILRSEWT GKESHHSGDVLNRLEQDVGTVVSFLTETIPNTISVVAMFVGAFLYLFSMDKVLAFVIVGI IPVFVLLSKLYIGQMRRLTRQVRDSDSKVQSVLQETIQHRMLIKTLESDSVMVDRLESTQ SELRHRVVRRTAFSVVSNFILNAGFSVGYLIAFLWAALRMADQTLTFGGMTAFLQLVNRI QGPARDLTRLAPVFVGVFTAAERLMELEENPLEEQGDPIPLTAPCGVRLEHITYAYDDGD SNVIEHLDFDFYPGSCTAVLGETGAGKTTLIRLILALLHPNEGKVILYNQQEQKELSPLM RCNFVYVPQGNTLMSGTIRDNLRLGKLNATEEEIKAALEMSCASFVMELPDGLDTVCTEA GGGLSEGQAQRISIARALLRNRPIMLFDEATSALDPETERQLLHNILSNHDKTVIFITHR PAVVDYCDQTLHLQKQ >gi|281305539|gb|ADEF01000028.1| GENE 12 15613 - 16167 454 184 aa, chain + ## HITS:1 COG:SP1000 KEGG:ns NR:ns ## COG: SP1000 COG0526 # Protein_GI_number: 15900873 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Streptococcus pneumoniae TIGR4 # 14 154 25 164 185 81 35.0 8e-16 MKRIVFLTFCLFCTVATLLAQDDDAKYATQLLEVGTTAPDLTLTTINGETLSLNTFRGKY VVLEFWASWCPDCRKSTPKVDELGAKYADHGVAFIHISFDTQKEAWTQYVQQNWKNKQAY HVCNFEKMKESKVAKDFQIKWIPSFYLINPEGKIVMGTVMVEKIEKKLAELMQLSKSCCR LKAK >gi|281305539|gb|ADEF01000028.1| GENE 13 16164 - 16883 334 239 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 231 1 223 245 133 36 7e-30 MIHLKDINKTYFGAQPLHVLKGITLDIEEGEFVSIMGASGSGKSTLLNILGILDNYDSGE YVLSGTLIKNLSERRAAEYRNKMIGFIFQSFNLIGFKTAVENVELPLFYQGVSRKTRRQQ ALEYLDRLGLAQWADHYPNEMSGGQKQRVAIARALITKPQIILADEPTGALDSKTSVEVM QLLKSLNQDEHMTIVVVTHESGVANETNKIIHIKDGLIGRIEENLDHNSSPFGTGGIMK >gi|281305539|gb|ADEF01000028.1| GENE 14 16903 - 18165 1332 420 aa, chain + ## HITS:1 COG:VC1566 KEGG:ns NR:ns ## COG: VC1566 COG0577 # Protein_GI_number: 15641574 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Vibrio cholerae # 1 419 1 402 404 117 23.0 3e-26 MRDILTEIWATARRNKLRTTLTGFAVAWGIFMLIFLLGAGNGLINATQQNSNRYLNTSMV IFGGQTSKAHKGLKEGRKIELNDRDMDITQERFSDNVEEVGAELDHGNTTMSHGKEYTAA NISGVYPNDYIINKRDMIYGRFINKIDIRDRRKSIVISDDMAKELSPTGNVEDMLGQIVR MEDLAFHIVGIYQVDKSMMGTDAFIPFTTYRTIYNVGDKTGNIVFSFKGLETEQQNEAFE QRYRANLNGNHGAAPDDEEAVWIWNRFTQAMQMNTGMGMLRTALWIVGIFTLLSGIVGVS NIMLITVKERTHEFGIRKAIGATPWSILRLIIIESIIITTFFGYIGMVLGIAANEYMNAT IGNMKVDSGMFTTTMFVNPTVGLDVCINATLLMVVAGTIAGLIPARKAAHVRPIEALRAE >gi|281305539|gb|ADEF01000028.1| GENE 15 18169 - 19413 1325 414 aa, chain + ## HITS:1 COG:AGc3336 KEGG:ns NR:ns ## COG: AGc3336 COG0577 # Protein_GI_number: 15889120 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 6 414 22 420 420 149 27.0 1e-35 MKFDIDTYKEIIETLSRNKSRSFLTGFGVFWGIFMLMGLIGGGQGFRELLNRVFEGFATN SSVIFAQPTTKPYDGYRKGRQWTLEYKDVERIKANVRDLDIVTPGLSQWGGNAVFGDKKS NCNIKGLMADYAKVETPHMYYGRYLNEMDMQQRRKVCILGKKVYKNLFPGGGDPCGQLIR IDSIYYRVVGVDYSAGNMQINGSAEESVVIPLPLMQQAYNLGQTVHVICVTGRPGVKMSK VAQPMRDVIARAHHIDPTDEKGITVFNTEVMYGMVDSLFAGVNFLVWLVGIGTLLAGAIG VSNIMMVTVRERTTEIGIRRAIGATPRTILGQIIAESIILIAVAGMSGILFAVIILQLAE MGSTTDGFTAAHFQVNFWTAVGAVIMLSLLGVLAGLAPALRAMSIKPVDAMRDE >gi|281305539|gb|ADEF01000028.1| GENE 16 19507 - 20610 1207 367 aa, chain + ## HITS:1 COG:VC1563 KEGG:ns NR:ns ## COG: VC1563 COG0845 # Protein_GI_number: 15641571 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Vibrio cholerae # 45 318 52 337 338 124 28.0 3e-28 MKKNIKFIVAGVIALIFIGTFVFLWFKSRPQPEVYDEFTPKMSNLKKVTVITGKIEPRNE VNVKPQISGIITEIMKEAGEMVQAGEIIAKVKVVPDMNQLSNAQSRVRLAQINVKQAKVN YDREKKLYDKGLVAGDEYDKIRQAYQQSQEEVKAAQDNLEVVRDGVSKNNANTSSTLIRS TISGLILDVPVKVGNTVILSNTFNDGTTIATVANMGDLIFRGNIDETEVGQLSVGMPMKI TIGALQDNTLQASLEYVSPKAVEQNGANQFEIKAAIRNIQGKKIRSGYSANAEIVLASAQ NVLTVPESAIEFSGKQTYVYVVKGDKDNKTYERRKVETGMSDGLNIEIKSGLNKNEKVRG PKKVKED >gi|281305539|gb|ADEF01000028.1| GENE 17 20869 - 21126 117 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGIIYLFVAKIVQAEDRESLLSLLRRSLSSAKVVQAEDRESLLSLLRRSLSSAKIVQAED RESLLSLLRRSLSSAKILQTADSTK >gi|281305539|gb|ADEF01000028.1| GENE 18 21204 - 24908 3991 1234 aa, chain + ## HITS:1 COG:HI0752_1 KEGG:ns NR:ns ## COG: HI0752_1 COG0046 # Protein_GI_number: 16272693 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Haemophilus influenzae # 47 895 99 974 1011 499 37.0 1e-140 MILFFETPQKNIIATEINHQPCQEDIDKLCWLFGQATCLDAEQLEGFFVGPRREMITPWS TNAVEITENMNLSGILRIEEFFPVRSKEAEHDTMLQRMYDGLGQDIFEVNHQPEPIKLVE NLEQYNEQEGLALSPEEMAYLHTIEKQNGRPLTDSEIFGFAQINSEHCRHKIFGGTFIID GEEKESSLFAMIKRTTKENPGKILSAYKDNVAFAQGPMIEQFAPENQATSDYFKVKDIES VISLKAETHNFPTTVEPFNGAATGTGGEIRDRMGGGVGSWPLAGTAVYMTAYPRLKGEAR SWENILPVRKWLYQSPEQILIKASNGASDFGNKFGQPLICGSVLTFEHQEDDQKLGYDKV IMLAGGVGYGKKRDCLKKESQKGNKVVVVGGDNYRIGLGGGSVSSVDTGRYTSGVELNAI QRANPEMQKRAYNLVRALVEEDSNPVVSIHDHGSAGHLNCLSELVEDCGGEIDMTKLPIG DKTLSAKEIIANESQERMGLLIDEQHLDHVKAIAERERAPLYVVGETTGDAHFSFVQGDG KKPFDLDVAQMFGHSPKTIMKDETVERHYENATYSQDQIDSYLDNVLQLEAVACKDWLTN KVDRSVTGRIARQQCQGKIQLPLSDCGVVALDYRGKKGIATAIGHAPQAGLASPQAGSVL SVAEALTNIVWAPLTDGLEGISLSANWMWPCRSQKGEDARLYAAVEALSDFCCSLHINVP TGKDSLSLTQKYPNGEKIISPGTVIVSAGGEVEDVKKVVSPVLVNDKNSSLYYIDFSFDD QRLGGSAFAQTLGKVGSDVPTVKNPEYFADCFEAVQALIKKGWVMAGHDISAGGLITTLL EMTFANPDGGIHVNLYDFAEEDVVKVLFAENPGVIIQVSDTHKQALREYLEAEGIGYAKI GYPTPKERQLVIKKGEWEHKFEIDVLRDTWYQTSYLLDQRQSMNGKADERRQNYWQQPVE WHFKDGFTGKLSQYQLDANRRSASGIKAAIIREKGTNGEREMAYALYLAGFDVKDVMMTD LISGRETLEDIHMIVFCGGFSNSDVLGSAKGWAGAFLYNPKAKEALDKFYARKDTLSLGI CNGCQLMVELNLINPELQRHTRMLHNDSQKFESAFLSLSIPENNSVMLGSLAHSKLGIWV AHGEGKFSLPETEDKYHIVAKYNYSEYPGNPNGSDYNVAGICSADGRHLAMMPHLERAIF PWQTAYYPHKHHCDEVTPWIEAFVNARKWIEGKV >gi|281305539|gb|ADEF01000028.1| GENE 19 24999 - 25589 590 196 aa, chain + ## HITS:1 COG:FN0712 KEGG:ns NR:ns ## COG: FN0712 COG2059 # Protein_GI_number: 19704047 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 19 188 5 174 186 151 46.0 8e-37 MGNHIKTPNTAETSQDNYRWTTLFKTFFKIGAFTLGGGYAMIPIIETEVVEKHHWIEKDE FLDLIAVAQSCPGVFAINISTFVGYKLRGTPGAICTATGTALPSFLIILLIAMFFHSFMD VPWIAAMFNGIRPAVVALIAVPTFNLAKSAKISLVNCWIPIISALLIWAVGVNPIFIIIA AAAGGYIYGQFIKPTE >gi|281305539|gb|ADEF01000028.1| GENE 20 25591 - 26166 444 191 aa, chain + ## HITS:1 COG:FN0713 KEGG:ns NR:ns ## COG: FN0713 COG2059 # Protein_GI_number: 19704048 # Func_class: P Inorganic ion transport and metabolism # Function: Chromate transport protein ChrA # Organism: Fusobacterium nucleatum # 1 191 1 174 176 109 40.0 3e-24 MIYLYLFFTFFQIGLFGFGGGYGMLSLIQTETVIQHHWLTSAEFTNIVAISQMTPGPIGI NSATYCGYAAIHNAGYGMWMSVLGSVVATTALVLPSLVLMILISKMFMKYMNTEPVQNIF SGLRPAVVGLLAAATLLLMNEENFGSMVGNPWQFWISIALFIATFIGTKYIKINPIRMIC YAAFAGLMLLY >gi|281305539|gb|ADEF01000028.1| GENE 21 26452 - 27366 432 304 aa, chain + ## HITS:1 COG:MA3243 KEGG:ns NR:ns ## COG: MA3243 COG0697 # Protein_GI_number: 20092059 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Methanosarcina acetivorans str.C2A # 14 268 13 270 291 63 25.0 4e-10 MNKIHGFVGAITSATAFGLIPLFSLPVLATGMPSTAVLVYRFAFACLIMLVVLMYQRQSL HLRFGESLRLMLLSTMYTGSAVFLMEGYRYLSSGIATVIMFSYPVWTALLMMIFRGEKAS GTTFLAIGLAVAGVCFLSGIENGVGNISVLGICLELLSGLSYAIYMVAYPTMNIRTIPTI KVNFYIFFFTMLLLMLYAIFTSGRLPAIHTGTVLLNLFLLGLLPTVVSNITLILSLKSIG STLVAILGAFEPLTAMCIGIMVFGEPFTVHIAIGFVLILIAVAVLILKNAHHKTKAEKDI VTSI >gi|281305539|gb|ADEF01000028.1| GENE 22 27660 - 29078 1728 472 aa, chain + ## HITS:1 COG:Cj0087 KEGG:ns NR:ns ## COG: Cj0087 COG1027 # Protein_GI_number: 15791475 # Func_class: E Amino acid transport and metabolism # Function: Aspartate ammonia-lyase # Organism: Campylobacter jejuni # 8 471 4 467 468 538 57.0 1e-152 MEKDQNYRVESDLLGELQVPTNAYYGVQTQRAINNYKISTGKMSDYPDFVISIAYVKKAA AKANAEADFLDAHIAEAICKACDDVIEGKLQDQFPIDMVQGGAGTSVNMNANEVIANRAL EIMGYKKGDYAHCYPNDHVNCGQSTNDAYPTALRYAVYRMNKTLVESLRHLVDTFNSKAD EYKDAVKMGRTQLQDAVPMTSGQEFKAFAHSLEQEIDFLNENAKRLLTINMGATAIGTGI NAAPGYDKLVTKYLAEYTKEDFKEAGDMIAATPDTADYVSYSGAMKRLAVKLSKICNDLR LMASGPRCGLHEINLPPMAPGSSIMPGKVNPVIPEVTNQVCFKVIGNDTTITIAAEAGQL QLNVMEPIIVQCLFESSQWLNNAMNTLADKCVKGITINTQHNLDVVNHSIGIVTALNPYI GYKNSTKVAKEALETGKSLHEIVVEKGFLSKEEVDKILDPKSMITTHNKMKI >gi|281305539|gb|ADEF01000028.1| GENE 23 29295 - 31583 1451 762 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880459|ref|ZP_06289166.1| ## NR: gi|282880459|ref|ZP_06289166.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 762 1 762 762 1521 100.0 0 MRRIQLYTFLLVSIFVVSACSEAVIAPTEEGHSIASSTKTTFITIDESTAGAEMPTRAAL PSDDATEGTRAAVTMDENFNLLGNDPQEFETDAYIIKEDNDMNDNGKRHIAYVKILWKQV KKVNGGFQLSTYYPKIELEWPNNNPIPIENERDGSSKWYIGGIIGGTMERVFNDSVPLSV EFYKDTKKLNEHVSIKGKNYRKFNIPFVAEWKKLEIKGKNKIAFSGLQFKPQGVVFHIKI KRNDKLITNPDDYRYMFASTALTGNIFYAFNDMDLPNQNNPAHILNAQKKFNPVANNWQW YFPKDERNLGGRENGSDKEMAYQCKLEGEHKKGVDYDEFWVWGMPIEHGMREFNGDGYME HNTSITSYHGGFALGWTDSNFKTVKRGEFLVANNSYGQITDEWNQPIVDWSKYMGKVINV NLKVKRPGSKKYKWCIPLERFAKSNLNATNPSGFTNDLSSGTGKGLFYQRNTPGGSYSFQ SIMNSGQHPQGYHMPSIYELTAAFPYFKLRLRDNWNDKDKTDMSGKLLSFDEKTANGNPK PYYGLEYLRLFGDEYDESNFINFNSIYKRVRNNGRDVIYAIRFIYNSSKNNNKAKATEVG NRYRCAYRYVISADGMNDDGKGHRLSVTARWLGNVPISIEDVATETFWEYNRSMDVIRIF NVENNSNQDVLETFLTRTKICPNTNKHFGVDNDTYGKEDWAGSFYRRAFTKNGFERKWNI GSNDQGAVRCIADWNLDENAANAPRKQKIKGRDEKYYEFSPK >gi|281305539|gb|ADEF01000028.1| GENE 24 31608 - 31769 182 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKKYQKPTIEVFRIDNNSLLVNVSPGDATLNNYEKVELEPKEDGDDYSGYDE >gi|281305539|gb|ADEF01000028.1| GENE 25 32326 - 34092 1176 588 aa, chain - ## HITS:1 COG:alr2190 KEGG:ns NR:ns ## COG: alr2190 COG0366 # Protein_GI_number: 17229682 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Nostoc sp. PCC 7120 # 29 304 6 333 492 65 25.0 4e-10 MKHIYTLLLMMLALAGNVHAQGWPKDYKGVMLQGFYWDSYQDTQWSHLESQADELSQYFD LIWVPQSGYCNATSMQMGYAPIWWFNHNSAFGTEDQLRKMIKTFKAKGMGVIEDVVINHR NGNGDWCNFPEETWKGQTMRWSLADICQNDDGGNTKRNGYDVSGAMDTGDDFRGCRDLDH TSDNVRKNVKLYLRFLKEELGYTGFRYDMVKGFAAKYIGEYNASAQPDYSVGEYWDGDPA KLKSWIDGTKVDGKIQSAAFDFALKYYIKDAFGTGQWNRLDGDCPAKDPAYSRYAVTFVD NHDTDRDNNRLAANHIAANAYIMAMPGTPCVFLTHWKQYKTQLKKLILARKAAGISNQSA ILKSERHGNGYIVNVRGEKGNVLLALGTPDSYDTNGYKLAVEGDGYKYYVADNVDISAVQ AIADEEPQTFTPPAFCTIDNDERCAFFEAPIFWTGTVNCWQWDQTANYTGGAWPGAACRY VGTTKAGNKVYKWSWNKQTKPANNPNAGIIFNCDNGSKKTADLEFVNGGYYDIYSGAKPK GIVTTPTGIKKVHGSQNVDGWYTIGGVKTNKPTRKGVYIHNGKKVVVN >gi|281305539|gb|ADEF01000028.1| GENE 26 34084 - 34197 65 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFHCHYLLVVINMYFDKKGALSTCESAPFIIIIILLP >gi|281305539|gb|ADEF01000028.1| GENE 27 34202 - 35791 1605 529 aa, chain - ## HITS:1 COG:no KEGG:BF3305 NR:ns ## KEGG: BF3305 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 3 529 1 532 532 513 51.0 1e-144 MKLKNILFLAAGFLAMASCSDDITTPVLNLKQAAKLHAVNPATITFTKANSAEAFPQISW EKANYGRGAVVDYTVTITNNENKKSVVAGETQDNKLAFTNEAMNTLLAKVGAYPGHTYDF TVSLKSSAFKTMTNDAQNTVNFKATPYDPNTVNINWKYAYVAVGYPEWDYTKAYLLGDPD GDGTYKGWVQFDEECSFAVVDGKDVTKVLAKDHKVDAGHKGFVEVTLAPDGKVTIGDPCT WGMIGEATSGGWTKDTKMEYDKDTRMWTAITPLTDKEFKFRANAEWKINYGSDKTNPDVL AQDGNNLKVAKTHAYIVKLNLTNAGKYTYTMGETNIELSSTELSVPGSYQGWNPTAKDAY RLESKSRDFQYTGIYYYPANTEFKLYDDGKWLGSVGEVKWNDTKTKAEFALGDGVNIKLT EGGWYRITANTKKMLASIAKTGWEIIGSATPGSWDKGQLMTYNPKTKKWSITIKMKDGEY KFRWDASWEKNFGGALTGLTQGGPNIKIGAGTYLIELDPEAKTATVTEQ >gi|281305539|gb|ADEF01000028.1| GENE 28 35819 - 37438 1449 539 aa, chain - ## HITS:1 COG:no KEGG:BF3306 NR:ns ## KEGG: BF3306 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 539 1 539 539 781 69.0 0 MKKYHIKKSLFLLLSGALLGMTSCVGDLDTEPLDKDELVSNVVFKNDINAYTQSLAKIYA GMVIGGNKGGDAEQDVKGIDGGSQASFIRVLWNMQELASDMAHCAWNDPGIPGFNHLSWD SSSPWIKGSYYRLAYQINLANAFLRETTDDKLSSRGCSNEVKNTIKEYRAEARFLRALTY MYALDLYRNYPFFDENSTIGSERPQQIMKDDLYKYVEKELLECEKDLAAPVVGWNKNYGN ANKAAAWAALSRLYLNAETYVGVKKYTECITYCKKIIDAGYELEPKYADMFKADNDHSKE MIFPLRYEGAETMTWGGMTALLCWGSAQFQEETNAKGAWQGVRAKSSLLKLFTNENEYKK DTRFSMLRLDGTKNVEIVKEGDFKDNGIPVTKFCNLNKNGSKPASNEAYVDFPLFRLGEI YLNLAEAVLRGGTGVTKNVAMNYLNELRKRAYKDKTVAPIDDNNFTLKFLLDERGRELFF EAQRRTDLVRFGKYTSGDYVWPWKGGEPEGKAVNDKYKVFPLPSDDIGSNLNLKQNDGY >gi|281305539|gb|ADEF01000028.1| GENE 29 37452 - 40451 2560 999 aa, chain - ## HITS:1 COG:no KEGG:BF3307 NR:ns ## KEGG: BF3307 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 999 1 1002 1002 1353 67.0 0 MKQVKFSLPLKMLTFICVLFISASAFAQQIAVKGHVKDEAGEPIIGATVRIVGHTSGTVT DIDGNFTLNAASGAKVSVSYIGYGVVEAPATANMVFTLKEAKSESLNEVVVIGYGRVKKN DLTGSVTALNAEKMVKGAVTSASDMLVGKAAGVSVITDGGAPGAGAKIRIRGGSSMSASN NPLVVIDGVPVDDGDIKGMANPLSTVNPDDIATMTILKDASATAIYGSRASNGVILITTK KGKAGGIQVGYSGSVKVSTHAKEVDVMSANDFKHFVTSKFGKGSIQANALGNANTNWQKE VLRTSLSTDHNVSVSGAVANLPYRVSVGYTKENGIVKTSDMERFTGAVNLSPQFFDKHLS VQLNLKGIYNTNRFADLGSLGMATQYDPTQPIYMKGSKYGNGYFMYLKKDGHPIDIALAN PVSILTDKSDKSKVYRSIGNIQLDYKFHFLPELRANLNVGYDVSKGTGDVITVDNSPMSW TWGNFKKGFGENSSFWQLKRNTLLEFYMNYTKTLGAHFIDAMAGYSWQHFYRSEWTKFPY SAAKAKEYGKEFYKGAEDLVTENYLVSFFGRVNYTLLDRYLLTFTLRNDGSSRFNKNNRW GVFPSAALAWRINEESFLKDTRWLDDLKLRLGYGVTGQQNLNSGDYPYMARYAYSQPGAN YYFGDKRVQLIAPLAYDENLKWEETTTYNAGLDFGIFKGILSGTLDFYYRQTNNLLNTVT APAGTNFSNEILTNVGTLENKGVELSLTAHPITTKNFQWTLGYNVSYNKNTITKLTINDD PRYKGVIHGGVDGAVGYNIQINSVGKPYNSFYVFEQMYDKNGTPIEGAYVDQNNDNKIDE ADLIPYKKSAPDVYMGLTSQMNYKNWDLSFALRSSIGNYVYNNTQSNREAWDGSQMYDQS GFLKNRLNSAANKNFHVGQFRSSYYVQKADFVRMDNITLGYTFNKLFNDKQSARLYLTVQ NPFVITNYSGIDPEISGEGIDNKIYPRPISFMFGFNFKF >gi|281305539|gb|ADEF01000028.1| GENE 30 40786 - 41811 759 341 aa, chain + ## HITS:1 COG:YPO0108 KEGG:ns NR:ns ## COG: YPO0108 COG1609 # Protein_GI_number: 16120455 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Yersinia pestis # 8 340 11 337 342 169 31.0 5e-42 MKISLPITMKDIAQALGVSVATVSRALQDNPRISKEQREKIQAYACEHHFYPNMIAESLR NSRVKPLKVIGVIVPQLSHFYFSSILSGIEEEATIHGYRIMVAQSNERYEREAKICQDFY KNRVCGVIVSQAKDTVKYEHFKKLIDHDMPLVFYDRICTGINCSRVVVDDYMGAYNAVTH LINTGCRRIACYSSPMTLEISKNRYNGYRDALLKNGLKVNENFLRICDNREDAEVLTPEL LQQEEIPDAFFAVNDDTAVGILYAAKRMGYRIPEDISICGFTNGDRSKACDPMLTTVEQR GVRVGEEAANILISKVEGLLPPDKIEKRIVRTKLIIRGTTR >gi|281305539|gb|ADEF01000028.1| GENE 31 42088 - 43404 1062 438 aa, chain + ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 8 435 14 446 451 416 53.0 1e-116 MNELKKKPDMSFWKLWNLSFGFFGVQIAYALQSANISRIFATLGADPHNLSYFWILPPLM GIVVQPIIGTCSDRTWTRYGRRIPYLFIGAAVAVLVMCLLPQSGSFGMTASVAMIFGLVM LMFLDTSINMAMQPFKMLVGDMVNEKQKAKAYSIQSLLCNAGSLVGYLFPFFFALLGIAN TAPKGVIPDSVIYSFIVGAGILILCVGYTVSKVREWSPEEYEQYNGSLKVDAEKKENWIT LLKHAPSTFWKVGVVQFFSWIAFMYMWTYTHGTVAANVWGTTDMASEGAQEAGNWVGVLF AVQAIGSVLWAPLLPKLGSRKTAYALSLVLGAIGFAACTVIHDQYLLFIPFLLIGCAWAA ILAMPFTFVTNALQGYGHMGAYLGLFNGTICIPQIIAAVIGGTLLSMVGSVQSHMMVVAG VSLLLGAAAVSLIKDVKD >gi|281305539|gb|ADEF01000028.1| GENE 32 43661 - 45433 992 590 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880466|ref|ZP_06289173.1| ## NR: gi|282880466|ref|ZP_06289173.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 590 1 590 590 1233 100.0 0 MKTKTIKGIFALISISLLGILASCSESDVLNDMQGTEADQASSIISGTASFDTDEVDAMF NVSPKTRTAVLYDSQKRLDYHWKKGERIPVFMCYKQGNKKKVVNEEVFVTADYEISFKLR IPAGFDRRRGDLYMGAIMGKQPGVNNGAWASGMTSDGRFKIESSKTIDITSEQFNLPFFA PMKPVKRSGDVYLDFKPLGSWFVVTLKTQQAVVPKSVIVNSDIVSTNGSLDLSSSTNGVI AWKPATTQQDTKFDVRNFQVRANKESLPVLVWFMPILNKEAQQPTTVSLRTQTDYSRRIR HFTKKAIEKGEKAFNHKVYRVEINEAATPEVRPCDKGLVITQFWSTRKNRYCNRNVLQIT NISDHEISLEGYYLVRSVFGSAETPSGVIDLGKLEENNAQFLYNDRKKKVLPSGGSLLIT GFTRRVARGTFDRCKGQVYQIALLGEDANLLRQFVPQGNRDCWGRESNCRFCNAYFLTYN GTNISLSKPNDIVDNFGRDACGRIYNFQFCNRTYYRVPYCYIYMGEQGLGGYGTHLYKPE RRIGRYAGSYWGPMEYFSTCSWRIENQNKITSLGFWGKYGDIPMFRNNMY >gi|281305539|gb|ADEF01000028.1| GENE 33 45457 - 45654 279 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880467|ref|ZP_06289174.1| ## NR: gi|282880467|ref|ZP_06289174.1| hypothetical protein HMPREF9019_1385 [Prevotella timonensis CRIS 5C-B1] # 1 65 1 65 65 125 100.0 1e-27 MKKNYVCPQIDIIYTKMEDALLAGSDGTGKLPRGPHGPGAKAYDVSIDDFSEETLWSDEI DENNK >gi|281305539|gb|ADEF01000028.1| GENE 34 46091 - 46924 560 277 aa, chain + ## HITS:1 COG:no KEGG:BF1989 NR:ns ## KEGG: BF1989 # Name: not_defined # Def: AraC family transcriptional regulator # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 2 274 12 285 288 129 27.0 2e-28 MCEHYQSNSPVGFRVVREKTGVVAHTASSRTAMIFLLEGTLRVEGKRFPTFYVHANQMFP MPAGIENSIYFVEDSLVLVLYFIESKFRFCHNIISDEMIKSAPKRTDWLFALDMLKPVEV LARQTANYVMDGLLCCDIQLSKQREFTAVMQAYYPKEELLPFLAPFYGMDLSFQDAIIAM SHTYPSIDEMAEKVCMSRPTFIRHFKRCFGETPKVWVSKVKGEALFKALSNTDDTMEEIA NQFKFSSVQRLSTFCKEMLGGTPNEIRNGEVTPEHAL >gi|281305539|gb|ADEF01000028.1| GENE 35 47064 - 49478 1594 804 aa, chain + ## HITS:1 COG:no KEGG:PRU_1227 NR:ns ## KEGG: PRU_1227 # Name: not_defined # Def: putative thiol protease/hemagglutinin PrtT # Organism: P.ruminicola # Pathway: not_defined # 1 317 11 320 777 151 30.0 9e-35 MLACVVFTHAEPITKRQASDIASKYVKNPKPWNDIPQTRSSKATCPPAYYVFTGSADHKF VIISGESTLNEVVAYGSGQLKDSNNGSSYFKQFLKDYERVVKAVRANPAKAAKAAQTSSL VKRKVEPLLTCKWSQFYPFNKYTPVISRQTTPTGCVATATAQMMFYHKWPKKRPKEYIST TGDEAQRSATYWWNDMKNTVAETTSERSAQAVGVLMRDIGKAVNMRYYHKGSDSNLQRAC NALRNVFDYTVKFLDKDFLPANQFHSNVIRELSEGYPVLVVGGNHAFVFDGYDERGFIHI NWGWAGENDGYFDINTVYMNIKGYAITGTFWDDMQALLAHPNNGKATPFEDIPRGLDARA TTAFTIDKTKGARTDAFNAEINKLGSYSSVKGELGVFTGKVGLALYDSGNHLVKVYPTTD ANYTWATIFTTFNFEVNNFNFEGVANGNYRLVPVYSELLDAKTQKNGEWVCVNGTNEMQV QLSDNEVTIETNNPKDDVVMEKAPTLLSPFYEDSGNYAAFSLTLYNSGREEVRGDLVMTL KNKETGEEFNGFLLTPNVVAQRLGSTSFAIKMLSQYYNSGRVGALRTGKYDVTFSIKANR KGVEKLIPITMKEPFEVEVLPNNHEGTIEFSYVDFLVNGKEVNYSTFDLNKTVEIGLQVQ SRVRGYGLRNGYHGNVYYRLLDLTTGTWIDLGAVHHVYLPCEQPNNKAQTRLTFSTSKLE ANHSYEVHIEIDRHGKRMDVWNSSALRHVFHTINKSTPTSIKSYKNSKNTHQHIFNLKGV RQTKAWDSLPAGIYIVDGKKILKK >gi|281305539|gb|ADEF01000028.1| GENE 36 50109 - 52814 2129 901 aa, chain + ## HITS:1 COG:L94405 KEGG:ns NR:ns ## COG: L94405 COG1640 # Protein_GI_number: 15672678 # Func_class: G Carbohydrate transport and metabolism # Function: 4-alpha-glucanotransferase # Organism: Lactococcus lactis # 409 901 3 488 489 426 42.0 1e-118 MNLLFNIEYKTVFGEDLILNVVNEGQPADGLYTPYRMYTTDGLHWKCDLKLPATADHVSL CYYYSVECDGKVTRKEWTTLTHQLDLTAAKAKQYHVYDHWMQIPEDSYLYSSAFTDCLHR STLQALQPTAYDKTVRIIVRSPQLKPDQYLVLSGDTEALGEWNISKALAMTQHQHNEWVV DVDAETLSEQHIELKFAALSYSLPTNEPMWEPCFNRTIDVPKLNRGDVVVYHLDQAFMPM PNTKVAGTLVPVFSLRSKGSFGVGDFGDLKAMIDFVEATGQHVLQLLPINDTTATYTYTD SYPYSCISVFALHPLYCDLRQLPKLNDKAQQTQFDALQEELNCLPQIDYVRVMKSKMDFL QLLFVQEGKRTLGTKAYKEFFEKSARWLVPYAQFCYLRDQYGTADATQWRDHHTWNEPDR KALSTPSNKAYQQVAFYYFVQFALYTQMKEAHAYAQSKRIVLKGDVPIGVSRHGCDVWVE PKYFNMDGQAGAPPDDFSVNGQNWGFPTYNWDEMLKDGCAWWERRFKNMAEFFDAYRIDH VLGFFRIWEIPISCVNGLCGQFSPSLGMSREEIASYGLNFQEDLFTKPYVRNWVINRVFG EHREEVIAKYLNHIHDDVFELNEHFNTERKIEAAFEGQEMDEKNTWIRDGLYALANDVLF VRDKKNPHLFHPRITAQFNFIYESLWDVDKQAFNRLYNEYYYRRNNQFWYHEAMKKLPKL VQATRMLVCAEDLGMVPDCVAWVMNELRILSLEVQSMPKDPKVTFGYLPGNPYRSVATIS SHDMPTLRQWWDEDYPRTQHYYNTMLGKEGPAPHPLPGWLARDIIWQHLASPSMLCILSI QDWLSMDERLRLDDANAERINIPANPKHYWRYRMHLNIEDMLTDNSLVSNLCELNSQSGR G >gi|281305539|gb|ADEF01000028.1| GENE 37 52884 - 55016 1783 710 aa, chain + ## HITS:1 COG:no KEGG:PRU_2750 NR:ns ## KEGG: PRU_2750 # Name: susB # Def: alpha-glucosidase # Organism: P.ruminicola # Pathway: not_defined # 18 710 16 737 737 1151 77.0 0 MKKINLILLFFMLPMAMLAQVVKSPNGNVSVNFSLQSNGVPTYSMTYKGKAVVKPSRLGL ELMKDKHASKGLRETDLMNGFTVKDTQTSTFDETWKPVWGETASIRNHYNELAVTLHQAS SQRNIIVRFRVYNEGMGLRYEFPQQDSLTYFLIKEEHTQFAMAGDHTAWWIPGDYDTQEQ KTQQSKLSEIRGRFHDAVNWGNSSVAVFSPTGVQTSLQMKSQDGLYINIHEAACVDYSTM HLNLDDKTMTFESWLTPDAYGAKGCMQTPCKSPWRTVMVSDDARDMLSSNLILNLNEPCK IEDTSWIHPTKYCGVWWEMIVGKSAWNYTDEFPSIKLDQIDWSKAKPNGRHAANTDKVKR YIDFAAKNGLDQVLVEGWNVGWEDWANHWKQDVFDFVTPYPDFDLKGLNEYAHSKGVKLL MHHETSSSAVNYERHLEEAFNLMNKYGYDAVKTGYVGDIIPRGDHHFSQSMNDHYMCVVK QAAKHHIMVNAHEATRPTGLCRTWPNMVGNESARGGEYEAFGGNNPDHTTILPFTRLQGG PMDYTPGIFVTKLSEWSDNTSFVHSTLAGQLALYVTMYSPLQMAADLPEHYEKYDDAFQF IRDVAVDWDDSKYLEAEPGDYITVARKAKGTDNWFIGGKCDENGHKSVIKLDFLDKGKKY RCTIYADAKNAHYDHNPQVYVITHKTVKRGDVLKINQACGGGFAVSLMAQ >gi|281305539|gb|ADEF01000028.1| GENE 38 55035 - 56987 1809 650 aa, chain + ## HITS:1 COG:TM1845 KEGG:ns NR:ns ## COG: TM1845 COG1523 # Protein_GI_number: 15644588 # Func_class: G Carbohydrate transport and metabolism # Function: Type II secretory pathway, pullulanase PulA and related glycosidases # Organism: Thermotoga maritima # 32 612 228 812 843 436 40.0 1e-122 MKHYQHYIFLLLAFLMPTSKLSLSAKVFNEMVYSPQKTAFKLNAPSTAKRVVLRLYKEGE GGKPTKTVKMKSMGNDVWAKEIKGDLKGMYYTFEVLGYQQHKGGETPGVFAKAVGINGNR GAIIDLQTTNPKGWENDKRPAIASPSDLVLYEMHVRDYTDSPTSPAVHKGKFVGLAEPKA IAHLKELGVNAVHLLPSFDFASVDEHQTSNANYNWGYDPKNYNVPEGAYSTNAKDPKVRI KEFKQMVQALHKAGIRVILDVVYNHTFDIENSNFQRTYPDYYYRKDADGKYSNGSGCGNE TASDKPLMRQFMLESVKYWINEYHVDGFRFDLMGIHDIATMNAIRQEMDKIDPSIYIYGE GWSAGTCAYPADKLAMKANIQQMPGIAAFSDELRDALRGPFSDDRKGAFLAGIAGEEESI KFGIAGAIAHPQVDMSKVNYSKAAWATEPTQMISYVSCHDDMCLVDRLKASIPNISTEEI IRLDLLAQTAVFTSQGVPFMLSGEEMLRDKQGVHNSFNSPIEVNRLDWNNLQRYPQVFNY YKGLIALRKQYSAFRMGTAEAVRQHLTFLPTEPCLVGYRLFDAPTNSYIYVLLNANKTEK QVSLPAGAYNVLCYDGVIDINGTEKLMLDEHADKAIVPAQSALILSINKQ >gi|281305539|gb|ADEF01000028.1| GENE 39 57130 - 57519 244 129 aa, chain + ## HITS:1 COG:no KEGG:DVU2021 NR:ns ## KEGG: DVU2021 # Name: not_defined # Def: hypothetical protein # Organism: D.vulgaris # Pathway: not_defined # 2 111 17 126 155 115 52.0 6e-25 MEPLYKDLSYEIVGAAFEVHNELGCGFLEKVYQEAFAIALRERDINFEREKRINISFHHH PLSTPYICDFCVENKIIVELKAIQRIDDSHKAQLINYLKATRLQLGILINFNEIRLSPIR LFNPQNPIR >gi|281305539|gb|ADEF01000028.1| GENE 40 57787 - 59706 2181 639 aa, chain + ## HITS:1 COG:CC2286 KEGG:ns NR:ns ## COG: CC2286 COG0366 # Protein_GI_number: 16126525 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Caulobacter vibrioides # 123 600 20 539 580 158 26.0 4e-38 MKKSIFIMFLLCQAFATNAQIQINRIDPTNWFVGMKDASLQLMVYGNDLHGTQVTTHDAG VQIDSVVQMPNAHYLLAYLNLKDAKPGTITLSFTKGKKTKKVKYELKQREMSGDKRMGFT NADVLYMLMPDRFANGDTKNDQIKGMNKYVCDRTKPSLRHGGDLEGIRKHLDYFTNLGVT ALWFTPVLENNSPDTNGFSTYHGYATTDYYKVDPRFGTNEEYRQLIDEAHRKGLKVVMDM IFNHCGFEHPWLKELPSDDWLNEPEWLKEGTGSGRDEKTGMPNGTKTNSKYLQTSYKLTP VLDPYASKIDLKETVDGWFVPSMPDLNQRNPHVIKYLIQNSIWWIETAGINGIRMDTYPY ADRKAMALWMKTLNEEYPNFNVVGETWNTEPAFTAAWQKDSKLSDINSNLKTVMDFSFFE KINKAKNEETDGWWDGLNRVYNSLAEDYLYENPRDVMAFIENHDTDRFLGHGQDVAALKQ ALALLLTMNRIPQLYYGTEVLLNGTKEKSDGDVRQDFPGGFPGDAHTAFTAEGRSKAQNE MFNWLSKLLHWRQGNEVIAQGKQIQFIPHQGVYVLARQYQGKTVLTILNGTSKEARMDVK RYAEVIGQHKTGVEVQTGKAIDLTADIQLEPRQTMIIEL >gi|281305539|gb|ADEF01000028.1| GENE 41 59787 - 60563 614 258 aa, chain - ## HITS:1 COG:jhp0094 KEGG:ns NR:ns ## COG: jhp0094 COG0463 # Protein_GI_number: 15611164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Helicobacter pylori J99 # 1 237 1 227 260 111 30.0 1e-24 MIKFTIITCTYQAEKELERTLRSVLEQTYKDVEHLIVDGASTDATLQLAQTYSTESQAQN NGHQVMVTSEPDKGLYDAMNKGLRHATGDYVLFLNAGDTFPSESTLTQVAACAERASVLP GVLYGDTDIVDNEGKFVRHRRLSPPKKLSWKSFMQGMVVCHQAFYARTDLAKQVPYQLKY RYSADVDWCIRVMKMAQKQGLPLCNVQIVVANYLDGGMTEKNHKASLKERFRVMESHYGY LPTLFMHAWFAVRSVLKK >gi|281305539|gb|ADEF01000028.1| GENE 42 60564 - 61838 798 424 aa, chain - ## HITS:1 COG:all4426 KEGG:ns NR:ns ## COG: all4426 COG0438 # Protein_GI_number: 17231918 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Nostoc sp. PCC 7120 # 1 421 1 416 417 232 32.0 9e-61 MRILIVNTSEKTGGAALASNRLMEALNKAGCKAKMLVKDKETNQLSVVALPRQWLKRWHF LWERWCIFCHLHFNKRYLFAIDIANIGTDITQLREFQEADIIHLEWVNQGMLSLRNIQKI VESGKPVVWTLHDIWPATGICHLSLSCTYFKKECGNCFYLPGGGSKSDLSHRIWQRKNAI YQQRKIHFVTCSEWLGQQAKASGLLSKQPLSIIPNPIDTHVFEPASKYEAAQRLGLPTDK QLILFASQRITNVNKGIQYLIEACQLFVKLRPELKDSVGLVVLGGHAEEITARFDLPTYP LGYVNDTKKIVDVYNAVDLFVLPSLSENLPNTIMEAMACGVPCVGFEVGGIPEMIDHREN GYVAHYKDAQSLAAGMAWILDKGTDYETLSKNCIHKVRTEYAQQHVAERYLAVYQSVWRN KKEE >gi|281305539|gb|ADEF01000028.1| GENE 43 62372 - 63232 207 286 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 18 235 16 234 245 84 25 4e-15 MQTIELIDLIIGYDNHAVVSPITASLNSGQLTCLLGANGSGKSTLLRTLAGFQPPLKGTI KMAGKPLQQWNHQELAQKVSVVLTEKLDLKNITVYELVGLGRSPYTGFWGGLSKMDDEII QSSIALVGITPLSHRKIQTLSDGEKQKAFIAKALAQQTSVIILDEPTAFLDFQSKAETLQ LLARLAHKEDKCIFLSIHDIELAIQVADKIWLIDDAHQLQVGTPKELIDNGIFPRFIENS SIQFDSYHQKIKIKNSHFIVERNPFTSDKMAVFLKLSMIKSLFMIR >gi|281305539|gb|ADEF01000028.1| GENE 44 63271 - 65817 2192 848 aa, chain - ## HITS:1 COG:no KEGG:Coch_0557 NR:ns ## KEGG: Coch_0557 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 60 844 48 826 827 839 52.0 0 MILSNKHFLSFFFLFMGLSLQAHPWLYPSLKVDTTKTEKKTPRDTTSTVKDTVDVKKKVK KKNEYADLLKKGGTELKGLFTVRHIEDKWYFEVPDSLLGRYFLAVTRLTATPQNFGKYAG EMMNEATVYFEKRDEKTMLLRVYVLSQLADEKDNISRTLKASTVDPIVASFKIIGPNKDA KRSLIEVTKLFKSENKVMSFAEFFSKRLKLGGLQSDRTFIDTLKVYPINVEIATTRTYSS SGQNMAAAQTGAVTLGLNTSFVMLPKIPMRKRLWDERVGYFTDRVTYFNDNQHKTDREQF IGRFRLVPKDVQRYRRGELVEPVKPIIFYIDPATPKKWVPYLIKGVNDWQVAFEAAGFKK AIIGKEWPKGRPDMSVDDARYNVIRYLPAEIENAYGPHVVDPRSGETIESHICWYHNVMN LLTKWYMTQCGPLDKRAQKMPFDDKLMGELIRFVSSHEVGHTLGLRHNMGASHATPVEKL RDKAWVEKHGHTVSIMDYARFNYVAQPQDGISSKGLFPRINDYDKWAIKWGYQYRPEFKD EFAERKALRAETTKVLKNNPRLWFSGEGRDEDPRSQTEDLGDNNVKASDYGILNLQRVMV NLPKWTKQPDSQFDNLTEMHESVRDQFRRYTNHVLKNVGGRYLNNLPGSKPYEVAPAERQ KEAVDFLARQLFDAPLWLYPDNITSITGDNAVARISSDQNRVLNSLLSLDVLTKIYNDSF DRSSAYQLPDYLDDVYRAVWKPLMTEQNIKNTTRRTLERSFVQCVDQLLNPSEKPQRASN LSQTFGMSSGGNSSSLTSDALLYVQMLLDKVETYCQAQQAQSSGVNAMHYKDLLRQIKRV KDKQTSVK >gi|281305539|gb|ADEF01000028.1| GENE 45 65841 - 67904 1991 687 aa, chain - ## HITS:1 COG:PAB2364_1 KEGG:ns NR:ns ## COG: PAB2364_1 COG0143 # Protein_GI_number: 14521189 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Pyrococcus abyssi # 8 553 3 553 562 500 45.0 1e-141 MEEKKFKRTTVTAALPYANGGVHIGHLAGVYVPADIYARYLRLKNQEVIFIGGSDEHGVP ITIRAKKEGITPQDVVDRYHSMIKKSFEEFGISFDVYSRTTSKTHEQLASDFFKKLLEEG KLQEQESEQYYDEEAHQFLADRYIKGECPHCHYDGAYGDQCEHCGTALSPLELINPTSTL SGSKPVIKKTKNWYLPLNDYQQWLKEWILQGHKEWRSNVYGQCKSWLDLDLQPRAMTRDL DWGIPVPVEGAEGKVLYVWFDAPIGYISNTKELCEQAPERWGSWEKWWKDEDTRLVHFIG KDNIVFHCLIFPTMLKAHGGYILPDNVPANEFLNLENDKISTSRNWAVWLHEYLVDLPGK QDVLRYVLTANAPETKDNNFTWKDFQEHNNSELVGIYGNFVNRALQLTKKYFEGVVPACG ELLDIDKQTLEEFKDVKQKVETLLDAFRFRDAQKEAMNLARIGNKYITECEPWKVWKTNP ERVKTILYVSLQLVANLAIAFEPFLPFSSKKLRQLINMDTCDWSQLGSTDLLKANHHLAE PELLFEKIEDETIEFQLKKLEETKKANAAANYVAKPIKPTIDFADFEKLDIRVGHIKHCE RVKKANKLLKFTIDDGTGVERTIVSGIAKFYDPEALIGKDVCFIANLAPRKLMGIESQGM ILSAEDFDGSLSVTTIEHPVKPGSQVM >gi|281305539|gb|ADEF01000028.1| GENE 46 68508 - 69692 784 394 aa, chain - ## HITS:1 COG:XF1728 KEGG:ns NR:ns ## COG: XF1728 COG2814 # Protein_GI_number: 15838329 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Xylella fastidiosa 9a5c # 9 342 63 396 447 158 29.0 2e-38 MIHQNKTTEIFPWILIILMSSVTFVGILSELLPSGVLQQIMEDLNINEVEGGRLIGLYAL SSAIFCIPLISLSMQFNRKKVLLFLLIGFAVCNTFSGLVHNYYLILALRFLGGISAGVMW PMISAFGLRLVPSCYQGRAVAVIMAGNTLGISLGMPLMTFIGNRFGWRIEFIVLGLLVVL IAVLSILMLPSTPGEKLTSTTSPFVMLKNKSIVLIILLTFLGVCAHYGVYTYITQLVVEV GIKGGVEMALFIFGIGSLISVVVVTKYIDKYLRELSVLTFSLLGIVMLLFFFFRGVNVIT QLGFFLWGLLYGPLVTLFQAAVGNQVEHAKDVAMSVQSCMFNLSIMITTWIAGLLLIHFG TCSLLWYATLLVIPGIIISIFARYTLRKIGHTAN >gi|281305539|gb|ADEF01000028.1| GENE 47 69782 - 71323 1458 513 aa, chain - ## HITS:1 COG:slr0904 KEGG:ns NR:ns ## COG: slr0904 COG0606 # Protein_GI_number: 16331658 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATPase with chaperone activity # Organism: Synechocystis # 1 507 1 507 509 509 49.0 1e-144 MLIKTYCAAVNGLDVTTVTIEVSLTNGVMYHFTGLGDEAVKEGRSRIASAMQYNGYKFPH ADITVNMAPADLRKEGSSFDLPLAIAILAANGSITSEILGQYMMVGELSLDGTLQPVKGA LPIAIRARKEKFKGLIVPTANVREAAVVNQLDVYGMDSMADVIQFLTGTKTFQPTVIDTR AEFYEHQYKFDLDFSDVRGQENVKRALEVAAAGGHNLIMIGPPGSGKSMMAKRLPTILPP LTLSESLETTQIHSVAGKLGTGTSLIAQRPFRSPHHTISEVALVGGGSTPQPGEITLAHN GVLFCDELPEFSKTTLEVLRQPLEDRKITISRAKYTIEYPCNFMFIASMNPCPCGYYGDP THTCVCTPGQIQRYMNKISGPLLDRIDIQCEITPVPFKDISRTKPGEPSADIRERVLKAR AIQTERFQNHKGIYCNAQMTERMIHQYAEPNQDGVEMLRVAMERMSLSARAYSRILKVAR TIADLAASPEVLTEHLAEAISYRNLDRGDWAER >gi|281305539|gb|ADEF01000028.1| GENE 48 71334 - 72329 631 331 aa, chain - ## HITS:1 COG:no KEGG:PRU_2389 NR:ns ## KEGG: PRU_2389 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 16 331 17 332 333 260 43.0 4e-68 MKHIAYFILLTLVCVSCGTDSHHFKLDGQLLHMNQGEFYVYSPDGIIDGLDTIKVQGGRF TYEIPCEKEGILSIVFPNFSEQPVFAQPGKSVDVKGDASRLKELQVDGTKENETMSKFRK KISNASPPEILKYVEEYVHDNPQLIGAQYLVVKYFLKTPKPDYAKAKQLVDVMVKHQTNN VSLIKLQKQLSAGHIVQGGTLPSFTTIDLKGNTITSSALSQSPLVVIHIWASWNYPSLDM LRQIHDLQKKNGAKLKVVGISLDASKKDCRDILQRDSIQWSNVCDEQMFESKLAHQLGLS SIPDNILLKNGRVVARGLDTEALVTKIKTLL >gi|281305539|gb|ADEF01000028.1| GENE 49 72344 - 74017 1701 557 aa, chain - ## HITS:1 COG:no KEGG:PRU_2390 NR:ns ## KEGG: PRU_2390 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 553 1 548 553 599 59.0 1e-170 MCKNLIFTLSVCAAFAFSSCSKMGPLSANNFTITPNPLETKGGQVPATINGAFPEKYMKK NAVVTVVPELRYGNGQVAKGAATTFQGEKVLGNDQMISYRLGGRYTMKTAFDFVPAMQQS EMYLTFMAKRGNKTVNIPAVKVATGVIATSELYKQLLLSDGGCLAPDSFQRVNAKKQEAN IKFLVNQANLRRSELKNNSVQEFVAMLKRINADREKLNIRNVEVQAYASPEGGYSFNDKL ANKRQNTSESYVKSQLKQTGVATGIDAHYTAQDWDGFQKLVQASNIQDKDVILRVLSMYK DPEQREQQIRNMSQAFRELADGILPELRRSRLIINYETIGRSDDQIKEQYATDATKLSAD EMLYYASLVDNQAEKEEIYQRTASYYDKDYRAFNNLATMAFMKGDEMGATRYLEQALRIN PQASEALANLGILELQNGNLKEAETDIAKALGDQNINVAIGSLNLAKGNYAQAEKDFEGI ISNSAALAQLMNKNYAAAAATLDNVKNPNAMTDYLHAIVAARRGNKFAADSYLKDALKKN PALKTYADQDLELSILR >gi|281305539|gb|ADEF01000028.1| GENE 50 73920 - 74105 116 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVKLLADSGPIFEHELNAKAAHTDKVKMRFLHIVINSNNIFLESVPRAGLEPAQPLLAKG F >gi|281305539|gb|ADEF01000028.1| GENE 51 74161 - 74373 132 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MCENLCDLQDYMLPLQTVKNAAIAQLVEHNLAKVGVASSSLVCRSFFYTFGKSSSLLVIS KKVASFVDKQ >gi|281305539|gb|ADEF01000028.1| GENE 52 74624 - 76672 1700 682 aa, chain + ## HITS:1 COG:VC2701 KEGG:ns NR:ns ## COG: VC2701 COG4232 # Protein_GI_number: 15642695 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol:disulfide interchange protein # Organism: Vibrio cholerae # 199 613 168 556 600 106 26.0 1e-22 MKKRLTLAMLLFIALFANAQMVDPIQSSAQLKTNNSAEGEIIFSLKIDKGWHVYSTNLGA SGPIEASIHVNKMDGVEKVGKLMARGNEISKMDNLFNMKLRYFENNAQFVQKVKFTKPKY NLDVYLEFGACNDATCMPPQEVSFKKSGTAPKFDAKAATSQEEKKVATEEQETSLSTTDT TQVLPQDSVKEAAVDSSATAVGTDLWQPVIQELQAQDGRSEKNSSIWYLFIMGFAGGLLA LFTPCVWPIIPMTVSFFLKRNKDRAKGMRDAITYGLAIIVIFLSLGLIVTALSDPHKLNE LATSAVFNIFFFLLLVVFALSFFGWFELRLPESWGNKMDSKASSTTGLLSIFLMAFTLVL VSFSCTAPIVGFLLVQTATSGNWIGPAIGMFGFALALALPFTLFALFPSWLKQAPKSGSW MNIIKVTLGFIELAFALKFLSVADLAYGWHILDREVFLSLWIVIFGMMGLYLIGKLKFQS DMIGGQDKPMPVACIMLGMISLAFTVYMVPGLWGAPVKAVSAFAPPINTQDFNLNQKEVH PAYTNYEEGMAAAKAQGKPAFVDFTGFGCVNCRKMEAAVWTDPSVAEILTKDYVLISLFV DDKTPLKEQIEVIDNGKKRTLRTIGDKWSYLQSNKFGANTQPFYVPLDNNGKPLAGSYSY KEDVSAYLDFLHKGLEQYQKQD >gi|281305539|gb|ADEF01000028.1| GENE 53 76817 - 78109 1116 430 aa, chain + ## HITS:1 COG:ECs3990 KEGG:ns NR:ns ## COG: ECs3990 COG3681 # Protein_GI_number: 15833244 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli O157:H7 # 8 427 11 434 436 287 38.0 2e-77 MLEENTRKQIIQLIQQEVVPAVGCTEPMAVALCTAKATELLGCQPEKITALLSPNILKNA MGVGIPGTGMIGLPIAIALGAIVGKSEYQLEVIKDLTPETLDEGKKYVKENRISIQLKQD ITEKLYIEVICEAGENHATAVIAGSHTQFIYLEQNSHPLLQKAHSSSSEAQGDDIQLDFR MVYEFATTTPLQEIAFLLKTKEYNMDAAEQSLKGNYGHCLGKTMERPLSRGIFGNSIYSH IISKTASACDARMGGAMIPVMSNSGSGNQGICATNPVVVYASENENTEEELIRALTLSHL TVIYIKQSLGKLSALCGCVVASIGSSCGITYLMGGDYAHICYSIKNMIANLTGIICDGAK PSCSLKISSGVSTAVLSALLSMENKHVTSAEGIIDEDVDRSIRNLTSIGKDAMNITDEMV LKIMTSKQHC >gi|281305539|gb|ADEF01000028.1| GENE 54 78384 - 80525 1701 713 aa, chain - ## HITS:1 COG:XF0842 KEGG:ns NR:ns ## COG: XF0842 COG3537 # Protein_GI_number: 15837444 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Xylella fastidiosa 9a5c # 25 708 40 761 790 538 41.0 1e-152 MKFGKFYLKTQLLALVLAGISMSVSAAQDSFTQFVNPYIGTGGHGHVFLGANVPFGAVQL GPTQITRGWDWCSGYHYSDSLIIGFGHMHLSGTGIGDLGDIAFLPTFDAKTYTERFSHDA EYVRPGYYTVRLADSKILVELTATQRAGMHRYTYPLSSKQPLLKLNLKQGIGWDKMTKCQ LTQENPTTVSGYRLSEGWAKDQRVYFVAEFSRAVKLQEMQADSVGVFSFDDATKPLLVRV GISAVSVDNAKANLRAEIKDWNFDRVAQEADAAWNDELGKIKVETPNLDDKTIFYTGLYH TMTAPSVFSDVNGQYRGSDGKIYQGDFVNYTTLSLWDTYRAAHPLMTIIHPEKQRDIAQT FLHIFQQQGKLPVWHLVGNETDCMVGNPGIPVLADIVLKGFDVDKKAAYQAMRTSALLDE RSLDNLKKFGYIPWNRDSTFETVAKGLEYALADACVAKVAKLLGEKKDYQYFFNRSKSYK YYFDKKTGFMRGVDNGKFREPFNPFHSSHRNDDYTEGNAWQYTWLVPHDVPGLIKLFGGK RPFVTKLDSLFTISGDLGENASPDISGLIGQYAHGNEPSHHILYMYNYVGQHDKTAEKVR EVLKTMYHNDFDGLSGNEDVGQMSAWYILSSLGIYQVEPAGGRYMFGSPLFDKAVVNVGK GKTFTIIAHNNSAKNVYVHQIKLNGRPYKKLYIDYKDIVSGGTLEFFMTDKRP >gi|281305539|gb|ADEF01000028.1| GENE 55 80749 - 81714 450 321 aa, chain + ## HITS:1 COG:no KEGG:Coch_1292 NR:ns ## KEGG: Coch_1292 # Name: not_defined # Def: bile acid:sodium symporter # Organism: C.ochracea # Pathway: not_defined # 1 310 2 313 320 358 64.0 1e-97 MSIIRFIKNWTLPISMAIGMTTYSVFAFIPPLDGAATFFAPIMDTILPLFMFLILFVTFC KVDFRRLIPVKWHFWVGVFQVVFVLLIMVVILGCKLRGNALILMEALLTCIIGPCAAAAA VVTQKLGGNLEEMTTYTFLSNFITALLIPICFPLIEHSEHITFLSAFLKILNEVCIVLVV PMFMAYIVKHHFHRFHRWVIGIKDLSYYLWGCSLMIVTGTTLKNIVHAETTTSFLVLIGL LGLVLCITQFAAGRMIGHRFDATVNAGQALGQKNTAFAIWIAYTYLNPIASVGPGCYILW QNIINSVEIWLYRRKGLERSA >gi|281305539|gb|ADEF01000028.1| GENE 56 81898 - 82185 180 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880489|ref|ZP_06289196.1| ## NR: gi|282880489|ref|ZP_06289196.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 95 1 95 95 182 100.0 5e-45 MIETHIHTPSCKIQAIEDGHEVGLLEFEIHENILTITHTYAYQKGRGIGKMLMSAAITYA REHRYKILPVCSFARVILQRNEAYKDLWIDEEQTT >gi|281305539|gb|ADEF01000028.1| GENE 57 82210 - 82773 308 187 aa, chain - ## HITS:1 COG:no KEGG:PRU_2392 NR:ns ## KEGG: PRU_2392 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 15 186 14 180 182 74 29.0 2e-12 MNKVVVFFGIVLLWISCGDSKEEFSSVRCYLLVNNQEHQDATLASAMNPTSPGVFCLIQQ TMKAGAPHFFFKNNQGSQSLSIFHAKEQRMHFIIGYNNGVIVGYGNLDQPAIFYAYDNQC PNCFDWRQIPRKDYPLTCSSTGIASCKTCHRTYNLNTGGNIVQGEPGHKLTRYRATTTGP HGVLNVN >gi|281305539|gb|ADEF01000028.1| GENE 58 82766 - 83179 467 137 aa, chain - ## HITS:1 COG:no KEGG:PRU_2394 NR:ns ## KEGG: PRU_2394 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 9 137 1 130 130 154 55.0 1e-36 MSAKFESSIREIPYPQLAVYQMLSDLSNLEKVRDKIPEDKLKDLNFDADSVSINSPLGAV QLNIIERDAPKCIKFQTQQSPIPLTLWIQIVPVTAQSSKMKLTIQAEVNMFMKGMIKKPL QEGIEKVADVLQMIHYE >gi|281305539|gb|ADEF01000028.1| GENE 59 83242 - 83880 660 212 aa, chain - ## HITS:1 COG:lin1945 KEGG:ns NR:ns ## COG: lin1945 COG0461 # Protein_GI_number: 16801011 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Listeria innocua # 5 212 2 209 209 238 56.0 7e-63 MEKTTLKREFASKLLQIKAIKLQPNEPFTWASGWKSPFYCDNRKTLSFPAVRTFVKIGMV HAILEHFPEVDVIAGVATAGIPQAALIADTLNLPLVYVRSKPKDHGLENLIEGELKPNAK VVVIEDLVSTGGSSLKAVEALRKAGADVVGMVASFTYGFPVAAKAFEEANLQLVTLTDYE NMVEEALSIGYIQERDLDLLHQWREDPANWRK >gi|281305539|gb|ADEF01000028.1| GENE 60 85062 - 85778 694 238 aa, chain - ## HITS:1 COG:mll3453 KEGG:ns NR:ns ## COG: mll3453 COG1040 # Protein_GI_number: 13472985 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Mesorhizobium loti # 18 234 1 225 240 88 32.0 1e-17 MTWRYRRMISFFSRLLDILAPRSCDVCGRRLAISEQVMCASCNRHLPRTHFELNPYENEM AKLFWGRIPIERAAALFYYYAQSEMSHVIYALKYDYRPEIGEALGRMTAVEFGAVGYFEN IDFIVPIPLTRSRRRKRGYNQSEEIARGVSEVTGIPILKNVVRRIQFYGSQTHKNRLERV ENVENAFELINSTLIVGKHVLLIDDIVTTGATVCSCAETLQRDGTVKISVLALGCTRK >gi|281305539|gb|ADEF01000028.1| GENE 61 85750 - 86238 392 162 aa, chain - ## HITS:1 COG:no KEGG:PRU_2397 NR:ns ## KEGG: PRU_2397 # Name: not_defined # Def: regulatory protein RecX # Organism: P.ruminicola # Pathway: not_defined # 6 162 3 160 163 135 51.0 5e-31 MLKEKKQVTEQEAWQKLSNWCAKAEHSSGEMRQKMMRWDIAEDAQERILERLVSGKYIDD ERFAHAYAHDKLTYDKWGRRKIEQGLFQKGVSKDIYGKVLDEISDERYIEVLKPLLSKKW KTITGRNDYECAMKLMKYALGRGFELPVIRKCIDDMEIPTDD >gi|281305539|gb|ADEF01000028.1| GENE 62 86262 - 87113 288 283 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 19 278 39 288 294 115 34 2e-24 MKSYLQLWSQLTPFYDETEAKALIRTVLEVRYGMSLTDIICGKVSELSTDECQSLQEIIL RLQRFEPVQYILGVKEFAGRTFHVSPGVLIPRDETAELCQWIVDTIQESKLKSPTILDIG TGSGCIAITLSLEIQKAKVVAWDVSTTAIQVANQNARDLGATVSIVCQNALNAPRDAMKW DIIVSNPPYICPTEAEEMEPNVLSYEPKEALFVPENHPLLFYDAIAHYATTALKPHGKLY FEINPLYRKSVVEMLKNKGFIGVMIRKDAFGKERMVCATVPDR >gi|281305539|gb|ADEF01000028.1| GENE 63 87135 - 88079 681 314 aa, chain + ## HITS:1 COG:BH1554_1 KEGG:ns NR:ns ## COG: BH1554_1 COG0117 # Protein_GI_number: 15614117 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine deaminase # Organism: Bacillus halodurans # 9 148 3 138 143 142 52.0 7e-34 MNINQDAIDKMYMRRCLQLAKQGRALAKPNPMVGAVLVCGDRIIGEGYHIKYGEAHAEVN AFAAVRQQDEHLLPESTLYVSLEPCSHYGKTPPCADLIVEKRVKRVVCGCIDVFAKVQGR GIDKLRKAGIEVTVGVLEEECKLLNRQFNVFNTLHRPYILLKWAQTANGFIDDNGRAIAL SSPFTKMLVHKLRSEYDAILVGRVTDEREHPQLNVREWSGPSPLRLVLHHGISLPELLDD LYQRNLQSLLVEGGATTLQSFINANLWDEIRIETAPVTVTNGTPAPRVPQGVELIAHEIH RKYIVETFYKHLKY >gi|281305539|gb|ADEF01000028.1| GENE 64 88229 - 91957 2481 1242 aa, chain - ## HITS:1 COG:BH0785_1 KEGG:ns NR:ns ## COG: BH0785_1 COG4724 # Protein_GI_number: 15613348 # Func_class: G Carbohydrate transport and metabolism # Function: Endo-beta-N-acetylglucosaminidase D # Organism: Bacillus halodurans # 65 582 48 552 556 118 24.0 7e-26 MKKHFYLLAGLVFFSTSMSAQYLREGYINSGQNVSSEKFTSLLNGWKANKKISEDDNFYI SRVKPKKRFTNTATQVKKNLTKENDKRLIMWVPWDDPHKNALPDGKFDSEVFSMWNYVSH FGDWSAPLGRIPANLLDVAHKNGVAVSGVAGIPFGSLRNEYANMLNNLSQRDVKDVAAFL RYYGIDGLGYNSEFSGGSWFMSNLQEFHKNLAAEMGKQNPVYENIWYDGTDNDGNLSFDK GLGDFNDQNFGENQAAASLFFNYNWNGGSLLENSVAYAKEINRDPLYLYAGINMQGGEPR WVGNGRWTLLEKYPVSIGLWGAHTRNMFWESRNEKGSNPETMQRSYLLRTERWFTGGTRN PANCPPVGNSLNYGVDNYDFQGMSPFMTAKSTLSWDLNDEAFITYFNLGNGRFFNWNGVR CHNSEWANVGVQDYLPTWHFWFSSKLLSGEKADVPTKGLDAEFTWKDAYVGGSCLRIFGS TNSEYLHLFKTKYGLKAGDVVTIRYKAIGGKSNVKLVLTATGSETQETAYGLRTIDELPN ADEWLTKTFTVTNDLAGKELALIALKFENAENLNLYLGECSIVRGKAETPSMPKIISSKL FDYNASGLDAKLIFNMNSNKAADEPVYNSDVKTSLFKVYAQQEGGEKVLMGITTSWAAMM YAIPLTIDNAKIRLGVSAVSLDMKSESEIAWTEYQDLPEYKYSEAIQLNKPVIKPNEDFE ISYVDPKHAEGTWEVLDASGKSVFKATGNAVKVENGLSKEGTYDIKLTDAKGIVHEYPGY IQITSLDKGALPKIESLTANGSKTDISVEENAAVAMAYTGRQADGILSRGLKIEEAGVGF KTNAAGFTQANFATKEWTLSFWIKFNSIPNEVQILDLRAQESGWPWNNWGTFWSQYDAKN KDLCFTLRERFNHGVPEHSTHWKVNFIPQTWTHVTFVMESNGTGIREKVYVNGKLADATK WNVGSGQSGTGMNPQYFVTTNSYMEEGDHTMMMIGKGRHQLAAIDGVVDDVKFFDKKLDD KQIATLMYDNTNAIAPTLFWDFESNADGDGWIPAKSGNVKFMTIGSKPGSKEGVQILTPK APTFDAGCFFSAGNSFKLETKPEWATNLGLITNVTGSDKMGSAAVTYPAHGDYKVTLTLE NSFGKDTKTFQVIHVSTKNGIQGTTASKTKAYVVGDEIYVECVEAGNYKFSVYSVNGNQI ISKALTVANGNTVKLQLCNTGIYILKVQKDGKTIRTVKLIRQ >gi|281305539|gb|ADEF01000028.1| GENE 65 92038 - 93834 1362 598 aa, chain - ## HITS:1 COG:no KEGG:BDI_3380 NR:ns ## KEGG: BDI_3380 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 91 597 59 550 551 223 31.0 1e-56 MKNIYIAFFLSFTAFSFSGCLDFDEPTDDFQETDIKLPDVVYQGKADSIDYLKEYSMEQV KNAVNKLKKERTLEQLNFAQYGLLGHKNGEWSSEAHEYQRQFALTEMLAQYGVMPHYDYA FGSEIKSAYAVSRSWLEGPNGHFLDQVKKGLTGILNHPTSDTIPEFKATGLLLYDFMAAY NTDLYGPFPYQDFKNNKQGSSFTYDATSSIYKTIVANIDTIVKVYKHYEQRPKEYQKFIQ RQINGFTVVNPNRSKLKGFDTWRRFANSLKLRLAMHIVKVEPQLAKQWAEEAVKDGVIES HDQEFGAYPNNYSGANPILKLYDWGDMRLSASFESMLKSLNHPYAHDLYLPNQDKFVDAD GNVTLKQESAVVGLRAGLRVGKGQGAESNPYLLYSKLNAEFVGKAPIYLIKLAEVQFLRA EGALRGWNMGGSAEYFYRNGVINSGILDYNTDKGKELQAKLEKYYELDQAVDFTYIDPLG NVSPSPSVTKIGVKWNEGDSKEMKLEKIITQKYIALFPNSFEAWTEMRRTGYPKVFPVLN VSDGDGSLNDGDLIRRLLFPNTDDASLKDIKRTGIPALGGPDRQGTRLWWDVKGVPNI >gi|281305539|gb|ADEF01000028.1| GENE 66 93840 - 97493 2514 1217 aa, chain - ## HITS:1 COG:no KEGG:BF4132 NR:ns ## KEGG: BF4132 # Name: not_defined # Def: putative outer membrane protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 38 1215 42 1107 1109 567 34.0 1e-159 MRGKYLYYSILVALLLCPLGISAQIVTKVFNKTPLKTVLKEVERQTKMSIIYNVSEVNGQ KKITATFNNEPVAKVLDRVLDSSLDYSIENKMITIYHRNKAQEKAKTTPQNRIGQSRTIQ GTVVDSHGEPLIGVTVRIKNAQAGVVTDIDGKYSLVTKETAPTLEFSYIGYTPQSIVAHN NNINVKLKEESSMLNEVVVTAMGIQRKEKSLTYATQQVKAEDLMRVQDPNVANTLEGKVS GITITPSAGGAGGASKIILRGNKSILGNNSPLIVVDGIPMSNGTRGQIGGDNITYSGASE GADPLSMINPDDIENINVLKGANAAALYGAAAANGVVMITTKKGKEGKLSISLASNVTAD RVWLTPKLQRSYGAKLLKGRGVAIGAWGGKLSDLKDTELQTEIPLNSDLFPGQKHILHLR NQAVDDVNEFFRTGLTANNSVSVSGGTEKIQTYFSMANSHAIGLVDNNSYNRNTLSFRQH YNLFKRLQIDASVNYVLTKTNNRPGGGTLLNPIYHLYNTPANIDMHYYQNNFSANDATWL VDGGAFYKQKENGDFEWLTGQKALLHGMRQEWAYMQGGENNPYWLTRMNSNVQNSNRVYG YLTGKLNLLEGLDFQARISIDHTNFTGEAKRYATTFAPVKFYPYGTYWKSTDRTEEIYTD YMLSYNKNFNKTWDVSATAGWVAHVSHSEAMTVDSPNATYISGTRQKMPTRINWFDTRSG DIGNTSSSKNTNWDKAALFTAQLGWKDKVYVDASYRQDWYRAFRQFANRGLSESYGYFGL GANAVMSQLFKLPEVVSYAKYRLSYSEVGNSIPNIFFSKGSENLETGAVSPSPYNHFRNP IPEKSKSFETGIEASFFDSRLDLDLTYYHALSTNQYMIATFADGKATPINSAKTRNQGIE VTVGYNFRLQNDFTWRTAVNFSYNDNKILRTAYNEDGSEALIAGGMAGVRVRYREGGEMG DMYVTDYERTPEGGIVSNGFFRQNADGTFTPYKYKILDGKIAIDENNHAIEKEYQGDING FGTLKYETSNDKLYEKYVGNMNSKWLLGWSNTMNYKGVTLSFLINGRIGGKVVSLTEGYL DNLGLSQRSADSRLNAEKNGWDYKGEALMPLPDGSGRYVPVKSYYESVGGSKNPIEYIYD GTNFRLRELSLGYTFKNLLGAGKNLNLSLIGRNLFFLYIKAPVDPDVSLSSGNGMSAFEL YNMPSTRSFGFSLKLDM >gi|281305539|gb|ADEF01000028.1| GENE 67 97576 - 98559 623 327 aa, chain - ## HITS:1 COG:PA1364 KEGG:ns NR:ns ## COG: PA1364 COG3712 # Protein_GI_number: 15596561 # Func_class: P Inorganic ion transport and metabolism; T Signal transduction mechanisms # Function: Fe2+-dicitrate sensor, membrane component # Organism: Pseudomonas aeruginosa # 124 317 73 265 280 71 29.0 2e-12 MENINNQLSNLAFRFFEGTLTNEEERELFTLLDGNDAQQQAFYELEQKWNDKHTPSLETD KQWHQFWDGIEKCKTLKPKRAIISLRYKLAAAAALLVLVASLCTYLLLGLNENSNAYYTC IAPLGGKAEVVLPDGSHVWLNAGSQLRYPASFDTNNREVQLTGEGYFEVAHCNHAMFTVN TKWYDVKVHGTKFNVTAYADDPDVTTTLLEGSVEISNAKHNLMMIPGDKVVFDKSSGELQ KTKTSVRSNAWVQGNTEFESITLADLAKILSRRFNVNIKIQSPQLKNEKFAIVLNNGENL DGILQGLEKTIPIKVVKTGRTVVIQSL >gi|281305539|gb|ADEF01000028.1| GENE 68 99440 - 100060 358 206 aa, chain + ## HITS:1 COG:PA1912 KEGG:ns NR:ns ## COG: PA1912 COG1595 # Protein_GI_number: 15597108 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Pseudomonas aeruginosa # 21 179 10 160 168 67 27.0 2e-11 MKTYSKDSAQLFEDIKSGKAEAYEYVFKTYYPMLKAYATRYIPTEEDLNDILQDCFTKLW LNREQLKPVSISSLLYTMVRNACLNFIRQQLIRNQRSIDDLPTQQESESLYSLFFHHNPE EELVYQELLDEIDQILNSLPYQSKQIFYLSRQEGLKNREIAERLNISIKTVEYHISKALT MLKAFAKKHQDLSLMLFIMALQFGIQ >gi|281305539|gb|ADEF01000028.1| GENE 69 100081 - 100656 353 191 aa, chain + ## HITS:1 COG:mll5118 KEGG:ns NR:ns ## COG: mll5118 COG1595 # Protein_GI_number: 13474268 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Mesorhizobium loti # 12 170 8 167 188 68 28.0 7e-12 MQSSDPFEITNNRHFLLSLSIGDEKAFDELFVKYYPKVLQFVMHFNHDKSVAEDIVQDLF MQLWINRTHFLGIKNIDNYLFVSARNAALRCLKDSFTYNENARIIPESNDMENPEVRLCY EEFYKLLMQEVQKMPEQRRKVFLMSRVDGMSNAEIAEKLGISKRTVEKHISLGIAYLREI FYLFILLTYLN >gi|281305539|gb|ADEF01000028.1| GENE 70 100802 - 102118 603 438 aa, chain + ## HITS:1 COG:XF0106 KEGG:ns NR:ns ## COG: XF0106 COG3669 # Protein_GI_number: 15836711 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Xylella fastidiosa 9a5c # 4 433 36 448 460 174 29.0 4e-43 MPVPHQAQLVWQDAELAAIFHYDLHVFDSVAYNQTLNRITPIQDVNIFNPSQLDTDQWIR SVKAMGAKIAIITATHETGFAIYQSDANPYCMKVLKWRNGKGDIMRDFVRSCRKYGVLPG VYIGIRWNSFLGVHDFMMPKDGSQFQANRQVFYNHMCEGMTKELMSRYGDLAIVWYDGGG HGPELGGPDILPIVEKYQKNIIFYHNSQRADIRWGGSETGMVPYPCWGTYPFPYSHSKNQ AIVFKCDNQLLKNGDANGAYYMPAMSDSPLRGYKGRHEWFWEPHDEQHIYPLDDLMKMYE NSVGHNSTLIIGVAPDNRGLVPDEDVNRLKEFGDEIKRRYGIPLASVSGVGNMFSLNFKP AVKVNSAVISENITKGERVRSYRIEGKIKGKWRILSSGTCIGHKKIDTWEPQNVSALRLY IKMSEGKPYISAFSAHRY >gi|281305539|gb|ADEF01000028.1| GENE 71 102169 - 103056 575 295 aa, chain + ## HITS:1 COG:SMc04204 KEGG:ns NR:ns ## COG: SMc04204 COG3712 # Protein_GI_number: 15965785 # Func_class: P Inorganic ion transport and metabolism; T Signal transduction mechanisms # Function: Fe2+-dicitrate sensor, membrane component # Organism: Sinorhizobium meliloti # 82 251 143 311 354 75 29.0 8e-14 MKIDKYLQTLWEEDVNKIPEGELHQALDIFRQNRTIYSQSVRRRSRVFTILKYAAIFMLP LLSAVLVWLFSASYYANDMQLAEYYVPKGCIDSLVLSDNTKVVVNSGTTIVYPHSFSSHA KERSVFVNGSCHFEVSKDTSQPFVVHLGNVKVRVLGTHFSVNSYSDEEQVVVTLEEGSVN VSDSFQNVTLSPNEQLIYSRTAGTMHKQMVDAMAYNSWVKGGLNFTQEPLEKILKSIERR YRVTISIAKNVDSKRCYTMNFKKGETIERIMNVLTFVSGDMTYTKDGDRIFISKR >gi|281305539|gb|ADEF01000028.1| GENE 72 103158 - 106610 2142 1150 aa, chain + ## HITS:1 COG:no KEGG:BVU_1043 NR:ns ## KEGG: BVU_1043 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 119 1150 23 1055 1055 1474 68.0 0 MKISMYKKTTAVLVLCLSMSIGAFGQSQIIHLQQNKATVSKLVKAIEKQTKMSVDFSQET LDLHRTIKISSKSLTLSALLEEMLRGQSLTYKIIDRHIAIVERQAIHNLSNNTLQQTVYQ VKGVVVDQTGEPIIGATVVEPGTDNKAITDIDGHFSLNTSSLRVMLNVSYIGYETSQVKA QSGQPLTVRMHENAQALSEVVVVGFGTQRKSNITDAITTVDTKMLADRPVTNLSQSLQGT VPGLNMSVSGLGGQLGQSMGISIRGTGTISTGSKAATLVLIDGIEGNMDDVNPSDIESIS ILKDAAASSIYGSRAAFGVVLITTKSGRADRTNVSYTSNVRYYGPGNLPDPMDAWEFANY FNEGSVNGGGSPIFNDDTLDRIQKYMRGEIKTSTIPNSNGNWQFHEKANDNVNWWDKQFK WSWAQEHNLNINGGNSKNRYYLSANYLGQDGNLRYGKDKFKRLTTNFKYNAAPYEWLEVQ VNARYIYKQLDNPLYTVLNGLLYHDISRMWPMMPFKDPNGYYMRNGKLNQLTNGSRSESS TNDAYFQGQLVFHPLKNWNITANIGLRTVNQFDKQNLNKVYEHNVNGDPLPLGYGSSYAT GQTGAMQYWLRSSMVTANLYTDYSFDINSHKFKLMAGLNTEKFNNRDVDLQRMDLITELV PEIGAATGVDKIRDASAYSWATAGFFGRLNYDYENRYFFTSNIRYDGSSRFLSKDRWGLF GSVSVGWNIAGEKFFKVDDRIISLLKPRISWGTLGNQNTNSYYPFYLLQQITVNGGSWLM NGKKPTVALAPSTVSTSLTWETVRSVNVGFDVSMLRNRLNVNFDYYNRKTSNMVGPAGEI ASVFGTKLPNSNNTDLHTRGWEIAMTWQDYIGKVRYNIGLNLSDARTFIDRYPNASKSLT TYYEGQELGEIWGYVTHGIAKSQSEMDAWIKDNKPSWGSGWTEGDIMYEDLDGDHIVNQG ANTLANSGDRRIIGNSTPRYRFGVNMGLSWKGFDFSMFWQGVAKRDLWLSGNMFWGLNGG EWQSTGLKEQLDYYRPANTTSVFGPNTDAYFPRVYMNSDKNQYVQTRYLRNGAYARLKNI QLGYSLSKQLVDKAHLQKVYLYVSAENLFTIKSLPKAFDPETAYSNYTDSNTGKTYPLQK TISFGLNVSF >gi|281305539|gb|ADEF01000028.1| GENE 73 106625 - 108673 1510 682 aa, chain + ## HITS:1 COG:no KEGG:BVU_1044 NR:ns ## KEGG: BVU_1044 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 680 1 679 682 943 67.0 0 MKKQLVYIALLGLAAIPVSCNDFLDSEPITEVSTNVYLQSENDLAAYAAKFYDDRDDGEH TGNILPSHGSGAYHLGLFRLDNGTDNQTSNVPSKLFVKGQFHVNEGNSNLWNTYMKKIRA TNYFLSKVAPQVEQGKISGNASRVRHYMGEVYFFRAYIYFTALRDFGDFPIVKKVIEENY DSVRVASQRRPRNEVARFILSDLDRAYQLMANVPPMANRLTQDCAALMKSRVALFEGTWE KYHRGTAFVPGDKQWPGANAEYLKRYTIDIDKEIRYFLQQAVEAADIVAASHSLYHDYAA LFNSVDLNDIPEVLLWRRYGLQTGNTSHHWVVSYLQRNGCGNLGLTKSFVDSYLMKTGLP VYAVGSQYQGDDTYQHVFNKRDPRMDQTILKTNDLLSTSPNLIEYIKKSDGYGYFYRSPI FEGEVENSCPTGYSLRKGLNTDGSMQPTKESFTGCPIFRAAEAYLNYIEAYYELHGNLGG KCDQYWKALRTRAGMDADYEKTIAHTEMEKEKEDWGSYSRGEQISPVLYNIRRERRVELV AEGLRLMDLKRWRSLDQVRNYQVRGINFWDQIYQLYTHPATVDASLPLKPIDIVEYGKSN KAANISAKSDKYARGKYLLPYRKSKSNIGFDGLTWTTANYLYPISNVEFRLTTAVPGSND YTTSSIYQNPYWSTEDGTLPAE >gi|281305539|gb|ADEF01000028.1| GENE 74 108703 - 110244 1072 513 aa, chain + ## HITS:1 COG:CC1172 KEGG:ns NR:ns ## COG: CC1172 COG3119 # Protein_GI_number: 16125424 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Caulobacter vibrioides # 29 500 33 492 521 144 25.0 5e-34 MNKQLIITTAAASFLGCGGTCAQQKENRPNIIVFIVDDMGWQDTSVPFWNQKTRYNEMYD TPNMERLALQGMMFTQAYACPVSSPTRCSLMTGMNMARHRVTNWTLQRDKMTDGKDGRVK PADWNYNGIAQVSTVSHTTTAKSFVQILKDNGYHTIHCGKAHWGAIDTPGENPCHFGFEV NITGTAAGGLATYLSELNYGHTKDGKPYALNAIPGLESYWGTGTFATEALTKEAIKALDK AKRYQQPFYLYMSHYALHIPIDKDMRFFPKYVRRGLSDKDAAYASLIEGMDKSLGDIMDW LEKNKEAENTIIIFLGDNGGLASSQEWRDGPLYTQNTPLKSGKGSLYEGGIRVPFIVKWN SEVKQGVRNDASIMVEDLYPTILHMAQITHYQVPQSIDGMDLVSSLQGRTDKDLQHRAII WNVPNIWDGTGPGISMNCAIRQGNWKLIYDYRTGHKELYNIMLDIGEKKNVAEQRPQKVR ELSALLGKKLRNMQAQRPSYKDTGKLCPWPDEQ >gi|281305539|gb|ADEF01000028.1| GENE 75 110371 - 111564 1154 397 aa, chain - ## HITS:1 COG:FN0512 KEGG:ns NR:ns ## COG: FN0512 COG0426 # Protein_GI_number: 19703847 # Func_class: C Energy production and conversion # Function: Uncharacterized flavoproteins # Organism: Fusobacterium nucleatum # 3 397 6 403 403 365 44.0 1e-101 MIELKNKVYYVGVNDRNKALFEGLWPLPSGVSYNSYLIDDDKVCLIDSVQVDFFVQFIEN LHEVLGDRPIDYLVINHMEPDHSGSLALLKKFYPNIQVIGNKKTFDMMSGFYGIKEGTIE VKNGEELNLGHHKLKFFMTPMVHWPETMMTLDVTDHMLFSGDGFGCFGALNGGILDEEID TSWAWLEMVRYYSNIVGKYGVPVQNALKKLADQQIDYICSTHGPVWHEYAQKVIALYDKM SKYETEEGIVICYGTMYGNSERMAENIARAASQAGIKNICMYNISKTHHSYILRDIFRYK GLIVGAPTYNNGLYHEMSELLSEIANHDIKNHYIGWFGSYGWVSKAVPTIAEWNETRLKF EPVGTPVEMKQALTAETKSQCEALGRAMADRLKADRK >gi|281305539|gb|ADEF01000028.1| GENE 76 111612 - 112556 631 314 aa, chain - ## HITS:1 COG:VCA0656 KEGG:ns NR:ns ## COG: VCA0656 COG0524 # Protein_GI_number: 15601414 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Vibrio cholerae # 1 258 18 276 323 76 23.0 6e-14 MRKVIGIGETVLDIIFKDSQPIGAFPGGSTFNGLISLGRSGVHATFISETGNDRVGKMIT TFLEDNGVDASHVNVFPESKSPISLAFLNEDNDAEYLFYKDHPHDQLDFTLPDIQPNDIV IFGSYYAVNPVIRPQVVSLLEHAKSHGAIIYYDVNFRPAHQRDVLRITPNLLENLEFADI VRGSHEDFQTLYKMDDAAKIYQAEISFYCKHFICTQGSAQVRLFAENRFEKAYDALASTP VSTIGAGDNFNAGFIFGLIKYGITRSMLEQGLSETQWDKLLDCALRFAAESCKSINNYVS TDFGNKMKAEIQTS >gi|281305539|gb|ADEF01000028.1| GENE 77 112728 - 113963 940 411 aa, chain + ## HITS:1 COG:BH2405 KEGG:ns NR:ns ## COG: BH2405 COG0612 # Protein_GI_number: 15614968 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 5 409 3 401 413 214 31.0 3e-55 MTNYHTSVLTNGLRIIHHPSPSPVIYCGYQIKAGSRNENADEEGLAHFCEHMTFKGTKRR KAWHILNHLERVGGDLNAFTNKEETVFYAALLKEDVARAVDLLTDIVFHSTYPDAEIHKE KEVICDEIESYNDSPADLIYDEFENTVFNGHALGHNILGTTLRVRAFTSEDAQRFTNQFY RPENAIFFIDGDIDFQRLVRLLEKATADQSTSVPIKPESLNRYQGSLQVPPPIIKDKGTH QAHVMIGSRAYDIHHPNRIALYLLNNLLGGPGMNARLNVSLREHHGLVYTVESSMASYGD TGIWGIYFGCDIHDVSQCIKLVKKELHRVINEPLTSYQLHAAQKQLKGQIGIACDNRESF ALDFGKCFLHYGWEKDITSLYAQIDAISARQIQQVAQEIMADDRLLTLIYQ >gi|281305539|gb|ADEF01000028.1| GENE 78 114076 - 114627 518 183 aa, chain - ## HITS:1 COG:no KEGG:BF2283 NR:ns ## KEGG: BF2283 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 183 1 184 184 164 47.0 1e-39 MMKTKKMKVATFLLAGALVSTSCVGSFSLFNKLASWNRTATDSKFLNELIFLIIAPAYGI CSAADALVLNTIEFWTGENPMANVGKTKQVMGQDGKYYAVKTLQDGYEITSPEGQTTKFI YDKSLNAWSQVVAGKQTELFRINEDGTVRVTLPEGKQMNVAMNEAGLYQVRMAVNGGTYW AMR >gi|281305539|gb|ADEF01000028.1| GENE 79 114807 - 115436 433 209 aa, chain - ## HITS:1 COG:no KEGG:PRU_2447 NR:ns ## KEGG: PRU_2447 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 4 209 3 200 200 271 61.0 1e-71 MASVLLSSTYFGPIQWYQKLYRHECCYIEKYDHFIKQTYRNRCQIATTQGVQTLSIPVEK FDTPKCLMRDVRISDHANWRHVHWNALVSAYGESPFFEFYEDDIRPFFTKKWTFLYDFNI EIMQKMCELLDIEPNVQATTEYLKIGEGHGDELEVVDFREAIHPKRPLPDRSFQPLPYYQ VYAEKHGFIPNLSILDLLMNLGNEAILLL >gi|281305539|gb|ADEF01000028.1| GENE 80 115468 - 115929 188 153 aa, chain - ## HITS:1 COG:BS_sipS KEGG:ns NR:ns ## COG: BS_sipS COG0681 # Protein_GI_number: 16079388 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Bacillus subtilis # 2 91 10 102 184 60 33.0 1e-09 MRNILQWILSIVVCTVVMLAIRAYLFTIFIVPNEELRPALQKGDRVLVNRLSHTHFSKGD VVLFRFKQEALGRIIAIPGDTIVVKGEQYQIPNYCHGSCTCGECQFVLVSNGQQHALVRQ GDIIGKAYSLWRWKHRQKKHEYNVPAHRQSNGS >gi|281305539|gb|ADEF01000028.1| GENE 81 115945 - 117390 1167 481 aa, chain - ## HITS:1 COG:Cj0856 KEGG:ns NR:ns ## COG: Cj0856 COG0681 # Protein_GI_number: 15792194 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Campylobacter jejuni # 404 481 193 266 282 67 44.0 7e-11 MIDKEKAKLNMKAQWTKFVVVLILYLLFLYWVESWWGLLVVPFIFDVYITKKIRWQWWKD AEPPVRFVMSWVDALVFALVAVYFINLFVFQNYVIPSSSLEKSLLTGDYLFVSKVSYGPR IPQTPLTMPLTQHTLPVINTKSYLEFPHWDYRRVKGLGAVKLNDIVVFNYPAGDTICTEL PYQTEYYNMVYGFGQQIYAQNNGGEINLNTLNRQQQHDYFQQVYALGRQYIASNPVEFGD IDSRPTDRRENYVKRCVGLPGQTLQIKNRIVYLDGKPNKEPENVQYTYYVKLKNEIPESL IEELGISMEDLASLQRNGFMPLTKKAVRTLAARKDIVESIRINTDATVGDLYPQNAVTGW TRDNYGPIWIPAKGKSIQIDMNNIAIYERPIRVYEGNQLEVKNNQIYINGRLAHRYTFKL DYYWMMGDNRHNSADSRYWGFVPEDHIVGKPIFIWWSSDPDRKGFKGIRWNRLFRLVDNI K >gi|281305539|gb|ADEF01000028.1| GENE 82 117435 - 118190 719 251 aa, chain - ## HITS:1 COG:RC0190 KEGG:ns NR:ns ## COG: RC0190 COG0289 # Protein_GI_number: 15892113 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Rickettsia conorii # 1 250 48 284 285 106 32.0 3e-23 MKIALIGYGKMGKMIEQIAKDRGHEIVCVIDLNNQEDFDSQEFISADVAIEFTTPTAAYG NYLRAFAHHVKVVSGSTGWMKEHGEDVKRMCSEEGQTLFWASNFSIGVAIFSAVNRYLAK IMNQYPQYEVRMEETHHVHKLDAPSGTAITLAEEIVDEMDRIHGWQKGVLHAADGSVSGN SSMVADQISIDSVRKGEVPGIHTVTYDSEADQITISHSAHNRKGFALGAVLAAEYTAQHT GLLTTSDLFKF >gi|281305539|gb|ADEF01000028.1| GENE 83 118621 - 118929 68 102 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIILTKRTYFHSFLDDFRKWLKTENSTPKKNNDELMSQNAISFVYDIDDRHSNLWQESC GTTKCVAQAGKCHETGQCRRTRLGARDVAQAVGHARKVRNTS >gi|281305539|gb|ADEF01000028.1| GENE 84 118766 - 119275 492 169 aa, chain + ## HITS:1 COG:no KEGG:PGN_0319 NR:ns ## KEGG: PGN_0319 # Name: not_defined # Def: probable RNA polymerase sigma-70 factor ECF subfamily # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 159 12 171 177 88 36.0 1e-16 MIDIQTFGKKVVALQSVLLKQASAMKPGNVDAQDLVQETLLKLWGMRERLETHPNLEALA IKTLKGIAIDHYRHRQLECEQRLQQPEQATDFTHECELNEELRMVRCVVHQLPPLQQQIF MLKEIEGYEAHEIQTLCGCSPEALRQNLSRARRFVRKELLRISDEMGKK >gi|281305539|gb|ADEF01000028.1| GENE 85 119148 - 119741 307 197 aa, chain + ## HITS:1 COG:no KEGG:BF1648 NR:ns ## KEGG: BF1648 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 57 188 3 139 141 75 35.0 9e-13 MRHMKYKPYADAVLKPYDKTCHEHADSSEKSYCESPMKWGKNRSIERKGNRMNEQKINQL IEKYLNGDTSCREEDELRTYFATVKGDIPEAWQPLRQLFVWELHQRQQHKVSYPNRRRLH WSWLATAISVAAVFIFLFMLTLQFQSSSANYVIINGEKTTNQETVIQEAENALGNVSSTQ QEDFNALFQIGETNHEN >gi|281305539|gb|ADEF01000028.1| GENE 86 119731 - 120183 363 150 aa, chain + ## HITS:1 COG:no KEGG:BT_0324 NR:ns ## KEGG: BT_0324 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 6 150 1 148 149 95 41.0 6e-19 MRTNLLADKWQRLILCVLLFGATLSMSAQQKLQIEQVFDRFARAKNCKMVLLRHTTLRGF QLDVYKSLTYKNLAPVIEPYLKADRKQAKKIKEVIEDGRVISGYYMMTPLKEGVNRYILF GKGNKNSGTVIYIEGALTPDEIMKMCYSQR >gi|281305539|gb|ADEF01000028.1| GENE 87 120223 - 121062 574 279 aa, chain + ## HITS:1 COG:no KEGG:BF1646 NR:ns ## KEGG: BF1646 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 275 1 293 297 106 27.0 1e-21 MKKLFFAFMLCTATLSYAAEGTDTTSVMLGKNKVVIHNDSLGISVSIFDSEGHQWKKTRE VNFVDGQEVEQVFVFSPFIPLRKNTKRTFYPHFPDFYYGANLLNANSNVIMRDTKSSEWG FSPCQIGLSLNKQNTLGLVSSLQFGFVHNHFNTSSVINRVEEETRMLPLEEKDVTTSFLK YYYVKLPIMVEWQKRIGRRKIFAGGGLALEYRYKEVSKYRIGKQKHTVSRDLGINALGVN AEAYVGFGSVNLYAHYALTPLFKKGIHAMPFGVGIGITM >gi|281305539|gb|ADEF01000028.1| GENE 88 121202 - 122512 731 436 aa, chain + ## HITS:1 COG:no KEGG:PRU_2464 NR:ns ## KEGG: PRU_2464 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 3 432 2 431 431 554 56.0 1e-156 MTEQLLHYCWKHRLFPLTQLATTDGQLVEVIDTGLHNSDAGPDFINAKIKLADTVWVGNV EIHNKSSDWYAHHHDQDTNYNNVVLHVSGDVDTSVRTTTGREIPQLELQVPQQVEQQYEQ LLMADAYPPCHEVVSEMPRITIHAWLSALQTERLEQKTLQIKQRLALCQGDWETVLFVTL ARNFGFGVNGDAFEQWAMHIPLHSVAHHRDDLFQVEAFFMGQAGLLERSLIPEKYHATMD TEGYFERLQNEYLYLQHKFNLQPMEGKRWKFLRLRPQNFPNIRIAQLATLYHSHRFGLRN LVESESLKALKDTMKSGVSTYWQTHYVFGAVSKKSEKRISESSLNVLLINTVIPILFAYG KYHDEEELCDKALNYLEQLQPETNHIVRKWQESGIKVENAGDTQALVQLQRQYCERKECL RCRFGYEYLKGKQHNR >gi|281305539|gb|ADEF01000028.1| GENE 89 122573 - 122971 393 132 aa, chain + ## HITS:1 COG:no KEGG:PRU_2385 NR:ns ## KEGG: PRU_2385 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 132 1 132 132 194 69.0 9e-49 MEYIFETEMEVRDYECDIQGIVNNANYLHYTEHTRHLFLKSLGVSFAKLHEEGVDAVVAR MKLEYKVPLKCDDRFISRLSLKKKGLRYEFYHDLYRATDEKLCFSCQADLVCLINGRLGH SEDYDKAFAKYL >gi|281305539|gb|ADEF01000028.1| GENE 90 122974 - 124107 1104 377 aa, chain + ## HITS:1 COG:FN1068 KEGG:ns NR:ns ## COG: FN1068 COG0758 # Protein_GI_number: 19704403 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Fusobacterium nucleatum # 84 376 10 288 288 190 35.0 4e-48 MLDTQEIINTIALTRINYFHLTGMLQLYRRLGSATAVIEHRRNIRDVLPDASPKLVQSLQ QLDEPLHRAEIELQWDLENGVMPLCMNDENYPQRLRQCDDAPLMLFYKGNINLNQRRVIC VVGTRRNTVYGEDLIRRFMRELRQLCPQLLVISGLAYGVDIIAHRQALQNGYPTVGVLAH GVDYLYPARHKQTADEMVKKGGLLTEFLTQTNADKVNFVRRNRIVAGISDACVVVESAAH GGGLITASLARTYNREVFAFPGNIGSQYSEGCNNLIRDNVAGLISNADDFVKSMNWDDDV KLQRAQQVGIERQLFPDLSAEERQVVSALKKHNDLQINMLSVQADIPIAHLTAILFSLEM KGVLKALPGGMYHLLMM >gi|281305539|gb|ADEF01000028.1| GENE 91 124212 - 125195 488 327 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145640649|ref|ZP_01796232.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae R3021] # 1 287 28 311 353 192 37 1e-47 MRIGNIDLGKYPLFLAPMEDVTDIGFRLLCKRFGVSMVYTEFVSAEALVRSIKSTVNKLT ICEEERPVGIQIYGRDVASMVEAAQIVAQSKPDVIDLNFGCPVKKVAGKGAGAGMLQNIP LMLEITREVVKAVHIPVTVKTRLGWDASHLIITELAEQLQDCGIQALTIHGRTRSQMYTG KADWTLIGEVKKNPRIHIPIIGNGDITSAEEAKHAFETYGVDGVMVGRASFGCPWIFKEM RNYLDGKPSDESFDLNKKLDILLEQLHINVARIDEYRGILHTRRHLAASPIFKGIPDFRQ TRIAMLRATTVKELEDILEKCREIIVK >gi|281305539|gb|ADEF01000028.1| GENE 92 125232 - 127181 1480 649 aa, chain + ## HITS:1 COG:VC0613 KEGG:ns NR:ns ## COG: VC0613 COG3525 # Protein_GI_number: 15640633 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Vibrio cholerae # 18 480 127 614 637 134 27.0 6e-31 MRTQLKTLLLLLLLSICNNIYSVTNEKPFTIPEIKTWKGGSGSFAIKSQTCITYRSNEAE VQQIATQLSSDYQQMFGQKLNVLKGKNKVGNIELVVKKNKKANPESYTMVIGSSIKIIAP TVQGLYWGTRTLLQLSEQNKGSLPCGTITDAPDYPFRGLMIDCGRKFFPIDMLREYVKIM AYYKMNALHIHLNDNGFKQFFDNDWNKTQAAFRLECDTYPGLTARDGYYTKKEFIELQKL ADSLHVEIIPEIDVPAHSLAFTHYKPEIASKEYGMDHLDLFNPETYTFLDGLFKEYLGGA DPVFRGKRVHIGTDEYSNKDQAVVEKFRYFTDRYIKYVESFGKQALVWGQQTHAKGKTPI KVKDVLMYAWSNDYSQPKEMIDLGYDLVSIPDRYLYIVPKAGYYYDYLNTEHLYKQWTPA NINDVIFPERHPKIKGGMFAVWNDIVGNGISPQDVHYRVMPALQTLSTKMWTGAKPFFDY AYFTDKKKQLSEAPGVNYAGRYQPGIVLTKDVVTPNERNAIEQIGWNYRISFHIEAAEEA PGTVLFSSPNAKFYLSDPISGLLGFSRDGYLNTFDYQFFPHEKAQVVIEGNREQTSLFVN GKLVSELNVKKINFGKRGDLYCIRTLVFPLLQTGSFNSKITHLKVESLQ >gi|281305539|gb|ADEF01000028.1| GENE 93 127620 - 128747 922 375 aa, chain + ## HITS:1 COG:no KEGG:PGN_1635 NR:ns ## KEGG: PGN_1635 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 8 369 23 380 384 420 61.0 1e-116 MPKGIICLLIITGLFGGIASIMGVANMLNTIMHTAHDLLLNTCFYLMGICVLTGALGKLF VEFGVVDLIERALRPLMKPVFRLPGVASLGAVLTFLSDNPAIITLAQDKHFGSYFKKYQY ISLTNFGTAFGMGLIVIVFMLGNGYFVEPLIGFIGACIGCVVSTRLMQHFVLKAYPQYRS EEALDGEKFRQQPIRQLHREETSVFLRILNSLLDGGKSGVDVGVSIIPGVLIISTLVMIL TFGASAEGNFTGKAYEGIAILPAIANKLDWLLNPLFGFSDPHQIAFPITALGAVGAALSL VPNFMSQGWLDGNAIAVFTGIGMCWSGFLSTHTAMLDTIGYRELTSKAIVSHTIGGLAAA LAAHWGYLLYAALFI >gi|281305539|gb|ADEF01000028.1| GENE 94 128969 - 129766 565 265 aa, chain - ## HITS:1 COG:alr3188 KEGG:ns NR:ns ## COG: alr3188 COG1397 # Protein_GI_number: 17230680 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Nostoc sp. PCC 7120 # 1 258 5 264 266 164 37.0 2e-40 MTGAIIGDIVGSQFRFNTTDVKDNVELFTNECSFTDHTICAVAIADAIMNNGSYQEALLD WCHRYPNPQGGYSDMITQWLKDPTTSTVSSFDNSAAKRIGAVGWLFNDYHQVLSESKRCA EVSHTHPEAIKGAQCVATLIYWLRTCRIRREEIEKAVKHNFGYEIPSLREIYATIHHGQN DAACQEIVPWSIRCFLESENFEDALRIAISISGDSVAEAVICGSIAEAYYQIPDELIEKA FGYLTKDILQIVEQYYEYLGSHLNK >gi|281305539|gb|ADEF01000028.1| GENE 95 131075 - 131929 602 284 aa, chain - ## HITS:1 COG:SPy0361 KEGG:ns NR:ns ## COG: SPy0361 COG0796 # Protein_GI_number: 15674511 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Streptococcus pyogenes M1 GAS # 10 278 5 264 264 180 39.0 2e-45 MAQLSRQPGPIGVFDSGYGGLTILHSIRRLLPQYDFLYLGDNARAPYGTRSFEVVYEFTL QAVTKLFEMGCHLVILGCNTASAKALRSIQQNDLPHLDAKRRVLGVIRPTAEIIGKLTQS RHVGLLATEGTVKSESYPLEIQKFYPDIQVSGVACPFWVPLVEYNEANSPGADYFVKKRM DALMAKDGAIDTIILGCTHYPLLMAKIEKYNKPGVRIVAQGEYVARSLQDYLYRHPEMEE KCTKNGTCRYFTTENPARFKDSAQIFLHENVNVEHVDLTPQSSL >gi|281305539|gb|ADEF01000028.1| GENE 96 131954 - 132466 503 170 aa, chain - ## HITS:1 COG:no KEGG:PRU_2286 NR:ns ## KEGG: PRU_2286 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 168 1 170 171 136 45.0 3e-31 MKKQLLFLLFLMLPVLSQAQQVLPKFGYFNLSSLIKMVPEYAVAQKNIADLRAKYDAETK RSEDEFNKKYEEFLDGQRDFAPSILQKRQAELQDMMERNVAFKKESQRLLAQAEKNAMQP VKDKVLHIIQQLGRERGYAFVLNADNDALPYVNLAYGDNLNDAVMSVLHR >gi|281305539|gb|ADEF01000028.1| GENE 97 132735 - 133235 631 166 aa, chain - ## HITS:1 COG:no KEGG:PRU_2285 NR:ns ## KEGG: PRU_2285 # Name: not_defined # Def: OmpH/HlpA family protein # Organism: P.ruminicola # Pathway: not_defined # 20 162 23 164 167 117 52.0 2e-25 MKKLILMLMLFAPMALFAQKFGHLNTQQVMNDMPEFVKARGEIEATAKQYENDLKAMQEE LQRKASEYDKTKSTMNATKQKETEESLMQLNEKIRTAYQDNSQALQKAQQEKMQPITAKL VKAIQAVGKAGNYVYIMDVTAGIPYISETLSEDVTAKVKAELNKMK >gi|281305539|gb|ADEF01000028.1| GENE 98 133266 - 133778 618 170 aa, chain - ## HITS:1 COG:no KEGG:PRU_2284 NR:ns ## KEGG: PRU_2284 # Name: not_defined # Def: OmpH/HlpA family protein # Organism: P.ruminicola # Pathway: not_defined # 1 170 1 171 171 226 70.0 3e-58 MKKILLMSLMCLAALSMSAQKFALVDMEYILKNIPAYERANEQLTQVSKKWQAEVEALNT EASTMYKNYQNEVVFLSQEQKKARQEEIMKKEKSASELKRKYFGPEGELFKKRQSLMTPI QDEIYNAVKEISELRGYSLVVDRASNSGIIFGSPKIDISNEVLQKLGYSN >gi|281305539|gb|ADEF01000028.1| GENE 99 133879 - 136494 2643 871 aa, chain - ## HITS:1 COG:RSc1412 KEGG:ns NR:ns ## COG: RSc1412 COG4775 # Protein_GI_number: 17546131 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein/protective antigen OMA87 # Organism: Ralstonia solanacearum # 40 871 30 765 765 119 21.0 3e-26 MNHIKKVLIIALVLGSSIMSQAQDKIVHPDINYAGTPRTLVIGGINVSGVEGYEDYMLSG ISGLTVGQTITVPGNEVTNAVKRYWKHGLFSDVSIGADSIVGNKIYLNIYLQTLPRVSEI NYIGLKKSEREDMEAKLGLLKGGQVTPNILSRAKFLAKKYFDDKGFNNADISIMQRDDVT NKNSVILDVVVDKKQKMRVRDIIIDNNRALTNSNIKGGLFKKGAFKKIHEAGKLGSLFKS KKFTPERWKEDKRNLIKKYNELGYRDAVIVKDSVWTVDDKHVSVYVKVDEGTKYYIRNIT WVGNTVYPTDYLSTLLGMKKGDVYNQTLMNKRLTEDEDAVGNQYWNNGYLFYNLQPTEMN VVGDSIDLEMRITENQQARLNHVRINGNDRLYENVVRRELKTKPGDLFSKEALMRSAREL ASMGHFDPEKVNPDVKPDPENGTVDINWNLQQKSNDQVEFSLGWGQNGLIGRVGLKLNNF SIRNLFNKNSERRGILPIGDGEVLSVGVQTNGRYYQSYNMNYSTNWFGGKRPTQFSIGAY YSKSTDVSSNYYNSGYMTNYYNYMYGYGNYAYNNYENYYDPDTYIKLMGASLGWGKRLRW PDDYFTLSVQLAYTRYMLKNWRYFLLSTGNANNLNLNFSINRTSTDNQLYPRKGSEFTAS VSLTPPWSKWDKKDYQNLALDPQSSTYLAEQQEKYKWVEYHKWKFKAKTYTALSGGQKCF VLMTRVEFGLLGSYNRFKKSPFETYYVGGDGMSGYTTGYAEETIGLRGYENGQLTPRGYE GYAYDRMSLELRYPFLLGNTTIYGLGFVEAGNAWDETKKFNPFDMKRSAGVGVRIFLPMV GLMGIDWAYGFDTVFGKKGGSQFHFILGQEF >gi|281305539|gb|ADEF01000028.1| GENE 100 136491 - 137252 554 253 aa, chain - ## HITS:1 COG:FN1326 KEGG:ns NR:ns ## COG: FN1326 COG0020 # Protein_GI_number: 19704661 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Fusobacterium nucleatum # 10 235 5 225 230 241 53.0 1e-63 MNHELDKTRIPAHIAIIMDGNGRWAAKRGLERSYGHQAGVETVRRITAACTKLGVKYLTL YTFSTENWNRPSDEISALMGLVLSSLEDEIFMKNDVRFRVIGDIARLPADVQKKLHETEE HTKDNATMTMVVALSYSSRWEITKAVQDIVTDVKAGKTSEQAICEDMVSKYLQTAFMPDP DLLIRTGGEVRVSNYLLWQIAYSELYFCDTFWPDFAEEDLYRAIANYQSRQRRFGKTEQQ IEDQNKLANNSTR >gi|281305539|gb|ADEF01000028.1| GENE 101 137273 - 137956 712 227 aa, chain - ## HITS:1 COG:no KEGG:PRU_2281 NR:ns ## KEGG: PRU_2281 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 225 1 216 218 217 48.0 3e-55 MQYRILSILCFLFAVQVHAQDDVEYRMEVGVGAGLVSYQGDFNGSVVKNLQPMGSLVWRY VFNPRMALRVMGSYGKLKGNSTAVKTYYPEWAKKSYLFAHQLGDLSVTYEYNFWPYGTGR DYRGAKRLTPFVFGGVGATYVSGNNKNVFTGNIPLGLGVKYKIGDRVNLGLEWAMHFSLS DELDGVKDPYQIESTGAFKNTDSYSALQLTLTYSFQAKCRTCHNDAE >gi|281305539|gb|ADEF01000028.1| GENE 102 137975 - 139381 1001 468 aa, chain - ## HITS:1 COG:no KEGG:BVU_0865 NR:ns ## KEGG: BVU_0865 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 459 1 461 465 199 27.0 3e-49 MKRRYLPLVSLFFIAPLLASCLSNDDEETKAYNDAAITSFSIKTLKRVVHTTSKSGADSS YVVNFPASDYHFYINQLTREIYNPDSLPLGIDASKVLATITTKNAGVLGVKNVANDSVKF YKATDSLNFVQPRQIVVYNQAGTALATYKIHVNVHREAPDVFKWSQPVKQQSALGALTGM RVLVNNGRLYVFGTEGEHAKLYTATTKSGADWHELSINVPLSAQAWENVALMGQTFYVYN NGALLSSADAQDWQKVADVALNHLVGATENKLYALSSEGQLVVSSDQGESWTREKLDKQE GQLPQKDFSLLVLPMKTNRGVNRLFLGGTTDKNNCLWSKIDDADPNAEQQPWTFFSQRSA DRYALPNMNHLQVVKNGDALIAMGGAGMGESSAVKPFAQFYRSIDGGLSWHQYGNLTFPK DFQSSVTSFAMASDENHYLWLICGKTGQVWKGRFNELGWKKVQTSFTE >gi|281305539|gb|ADEF01000028.1| GENE 103 140565 - 140837 500 90 aa, chain - ## HITS:1 COG:HI0430 KEGG:ns NR:ns ## COG: HI0430 COG0776 # Protein_GI_number: 16272378 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Haemophilus influenzae # 1 90 47 136 136 84 58.0 4e-17 MNKTELIDRIAEAAGISKIAAKKALDGTTDAIKEALVKGEKVQLIGFGTFSVSERAAREG INPSTKEKIKIEAKKVAKFKAGAELADALK >gi|281305539|gb|ADEF01000028.1| GENE 104 141049 - 141966 745 305 aa, chain + ## HITS:1 COG:XF0649 KEGG:ns NR:ns ## COG: XF0649 COG0705 # Protein_GI_number: 15837251 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Xylella fastidiosa 9a5c # 4 224 9 213 224 167 43.0 2e-41 MRSIPTITKNLLIINILAFAAMYALRSTIDLNSLLGLHFFIASDFRIYQLFTYMFMHASF EHLFFNMFALWMFGCVVERVWGPKKFLFFYLTCGVGAGLFQEMAQYGSFLVEGLPAYDSV QLEGLRISMDEFLNRWTTVGASGAVYGLLLAFGMIFPEERIFIFPLPIPIKAKWFVILYA GISLVMALTTTGGNVAHFAHLGGMVVGFFLIRYWKRHPYGSSSRSEGEQFFENLKDKWER HTHKSAETPPPHESYQEHQSDWDYNAHKQKEQEEIDRILDKIRKSGYDSLSSEEKRKLFD SSNRR >gi|281305539|gb|ADEF01000028.1| GENE 105 142042 - 143058 628 338 aa, chain + ## HITS:1 COG:no KEGG:PRU_2304 NR:ns ## KEGG: PRU_2304 # Name: not_defined # Def: endonuclease/exonuclease/phosphatase family protein # Organism: P.ruminicola # Pathway: not_defined # 1 337 24 362 364 283 42.0 1e-74 MLIAGYADRLDPTVHPSLANMGLLLPVLLIMNVGFLVAWVIFHFKNCWIPIVGFALCFPP IRNYCPLNLPEEAPPHAIKVLSYNVWYFAGWEDKGKANPILTYLRAQNADIVCLQEAETT EVGKERIEAALNPIYSFHDFSLTEKGSDRMAIYSKFPILKKEAIHYPSEGNHSTAFFLDI KGDTVIVINNHLESIGLTEEDKDSFKGMVKGELETDSIKIGSKSLYHKLANATKIRAPQA KAVAQYIEQHQDKTIILCGDFNDGPNSFARRTIAKHLRDCYIETGNGPGISYHLGGFYVR IDQLMCSKNLKPYHCQVDNKIKTSDHYPIYCWLEKQAK >gi|281305539|gb|ADEF01000028.1| GENE 106 143177 - 146206 2887 1009 aa, chain + ## HITS:1 COG:AGc2877_1 KEGG:ns NR:ns ## COG: AGc2877_1 COG0342 # Protein_GI_number: 15888881 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 381 655 275 548 562 226 41.0 2e-58 MQNKGIVIVTAVLLTLASIFYLSFSAATRYYDSQAAKLKDPIAQQEYKDSVKYLGIYSYQ KCLETQIGLGLDLKGGMNVILEISVPDVIEMLADHKTDPDFVKSMKEARAEEETSQSDFI SLFIKAFKKNAPQRRLAEIFATQQLQGKVNPQSSDAEVEKALRKESQAAIDNSFNVVRTR IDQFGVVQPNIQKLEGEEGRIMVEMPGIREPERMRKLLQGSANLEFWETFNAEEIIPYLN QLDAQLAHGESVAKDTTAVDSTVAQPKAAQKVKKAQPKFQIKEENQTKNVQTANDAQLAA AKKEHPLLAILSTTGQNALSCVGYASVRDTAEINRLIHSDIAKQILPADLKLLWSAKPAD GLQVKNYYELHALKITTTTGRAPLEGDVITDAADQFNHLSGQPEVSMTMNTDGARRWSAI TKANIGRAVAIVLDGLVYTSPRINGQIDGGQSSITGHFTIEDTKDLANTLKSGRMPAPAR IVQEEVVGPTLGAQSIQQGIISFALAFVLLMIYMIVMYNFIPGMIANCALIVNVFFTLGI LTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMKQAVSAGYSNAFSAIF DSNLTSAITGVILLVFGTGPIRGFATTWLIGIACSFFSAVFLTRLVYEYKLNKDKWLNLK FWTGISENMMQNTRYNFMKMFKTSGTIYAIAIIICIGSFVVRGLSQSIDFTGGRNYVVTV DKATHVENVRGVLNNAFKNTVGKNAGELATTNVIAIGTDGKTFRVSTNYNLESNDPQMDD KAETILYNALTKAGMVKQANIEAFKNPDIREGGSIISSSKVGPSIAKDITNNAIKSVVIA LICIFLYILLRFRNIGFSIGSVAALIIDTTMVIGLFSLCYGWIGFSLEIDQTFIGAILTV IGYDINDSVVVFDRIRENLKLHPKQDIQKTFNDSINQTLARTINTSVSTLIVLVPIFILG ADSIRSFAFAMIVGVFVGTLSSIFLASPIAYLVLGRKIKNEQEKEAAIA >gi|281305539|gb|ADEF01000028.1| GENE 107 146547 - 148376 1048 609 aa, chain + ## HITS:1 COG:PA2044 KEGG:ns NR:ns ## COG: PA2044 COG1305 # Protein_GI_number: 15597240 # Func_class: E Amino acid transport and metabolism # Function: Transglutaminase-like enzymes, putative cysteine proteases # Organism: Pseudomonas aeruginosa # 258 379 271 392 624 64 33.0 6e-10 MNDISHLKLWLVLLLTLTSISIWGAKPVKDVVIDDCTDTYVFMSDNDGKPIVKNTVTTLY QSLSLRNINIQPYTLYGEFISLDKASGKGAAQYRNATPENVFYDDTKVCFFNINFDRKRH ESKVKFERTFKDVRYFTRIYLSEDFKIKHKTVVIRIPKQFNQFKLIHQNFTPNIKFEETE DANDRIYTYTITDMEGMVSENAMPPMASIYPYICIVGAFSDYQDMYKWSNELTQIDTNIP NLPTILKEIGQGAKTDEDRIRNTYAWVQKNIRYVAFEAGITGHQPDRPAEVVRKCYGDCK GMAMLLCTLLKAQKMDARLVDIGTEDIPFKASDVPTLGAVNHMICMLSHGGKTYWLDATN RFIPATHIPGNIQGREAMVENGANCTLMTLPILNSNSSVDSLSYHYTLEMNNQPRLVGRV SNAWCGDMKEFFMRTHDATQQGDKLLLLANAMNSDDHAHEITDVKWTVKDRREPWAILEG KIINRTGVQQADHEVYVELNPHNELFSQRIDTTDRTHDVMLPLRCRIVREVSVQLPAGCK VMIPPSKKFDMPQGTMECTFTQKDNCVILRRVLTIHQRLLPKADIMKWNNMLSKWNDACN EQLVITNLN >gi|281305539|gb|ADEF01000028.1| GENE 108 148389 - 150560 1829 723 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880542|ref|ZP_06289249.1| ## NR: gi|282880542|ref|ZP_06289249.1| hypothetical protein HMPREF9019_1464 [Prevotella timonensis CRIS 5C-B1] # 7 723 1 717 717 1441 100.0 0 MNRVSKMRVCLCTLLLIGTTCVYADKLEKYKAFADTIRKNVWAMDLPQFKNTNIPSKYKN ESAVIVASYRDVSVAQKSHLNLLTVINLSFKMKRNIISSDLNRVCIHINDQAALKKYSEF DFISYYQRYRLGWSEKVQHVLGVRVIKPDGTIREVSTDDYVNTAEGKNDKEKGQKLAVPG LAVGDNIDIFTYEEKKFEEHTMEPFIISYQEEYPMLWKKVHCTLDKDLTSQYRTLNGAPD FKQSTDEDKNIILDAEVTNVETTNPDLWYHQLEHSPMTILNIQGKRLKGEFIPPSSKSKG LHANPKAKDIQDDALEFYRVATLDYFGNLELRKYCKAAKKQFPNITDRADYIYDLLCFTY AKDRITDASLRRFAYNLQLRLLQAGIKKTRIGITTLDGCEPIDQLSVYANGVPFLYLKEG ERYYSWCPSINIAGELRADMQGRKAILQPENSKEAKKDYPVFVLPASKAEDNQSAYTLKT KIENGTELAINHEHRATGTIREQLGTEILTLKDVYDSYLDRMTDAKPFTEALGKRKAEAE QQTLDKAKEEQQEWLKDLVKSYWDNTPKNIRDCKIVSVGSSKKNRNLTYTANYSMEGMVK KAGRNLIISTGKLLGGMLKVEGQERHRTADIDMISPRQTIWNIEIALPEGYKVSADALEQ LHKNVTNECGSFVSKASTADGKLLINVVRTYNHKHEPAANWDKLLRIIDATNEFTNIQTV IKM >gi|281305539|gb|ADEF01000028.1| GENE 109 151314 - 153164 1637 616 aa, chain - ## HITS:1 COG:PAB0626 KEGG:ns NR:ns ## COG: PAB0626 COG2217 # Protein_GI_number: 14521140 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Pyrococcus abyssi # 21 611 91 688 689 496 45.0 1e-140 MEQEHTEEQMPWWNVILSGGMLVIGLLFPYFGLDFVEKPQFMLAWYLLAFAFVGLPVMKE AWETALKGDVFSEFMLMTIACIGAFAIGEYPEGVAVMLLYCIGEALQDRAVDRARDNIQE LIAFRPTVAKVVVQGKIIEKSPEEVQVGDILEVKAGDRVPLDGKLVSASAAFNTAALTGE SLPRTFETGGEVLAGMIAVDAVSHLEVVRPASESAVSRILNMVESAAERKAPTELFIRRF ARIYTPIVIGLALLTVVCPYLYSIFDSQYSYVFTDWFRRALVFLVISCPCALVISVPLSY FAGIGLASKHGILFKGSNYLDAITEVDVVAFDKTGTLTTGEFAVQSVVGLDQEALQTVAA MEKSSNHPIAQAILKYCPTEENISSQDMAGYGLKNEEWLVGNLKLLDREQVSYADALRSI PETVVAVARKGKYMGHIILADTIKEDAKKAISDLPVRAEMLSGDRQELVTKVAADLGISH AYGDLLPDGKVLHLQNVKNAGERVAFVGDGINDAPVLALSDVGIAMGGLGSDMAIETADV IIQTDQPSKVACAMRIGRYTRRIVNQNIALALGVKGVVMLLGLLGFANLWMAVFADSGVA LLAVLNAARIFFKKQN >gi|281305539|gb|ADEF01000028.1| GENE 110 153302 - 154336 1070 344 aa, chain + ## HITS:1 COG:YPO2058 KEGG:ns NR:ns ## COG: YPO2058 COG2255 # Protein_GI_number: 16122297 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Yersinia pestis # 7 329 2 329 334 394 60.0 1e-109 MEEDFNIREERLSSAEKEFENALRPLKFNDFSGQPKVVENLEIFVEAAKYRGEPLDHTLL HGPPGLGKTTLSNIIANELGVGFKLTSGPVLDKPGDLAGILTSLEPNDVLFIDEIHRLSP VVEEYLYSAMEDYRIDIMIDKGPSARSIQIDLNPFTLVGATTRSGLLTAPLRARFGINMH LEYYEPPTLVRIITRSATILKVPIDEEAAYEIARRSRGTPRIANALLRRVRDFAQVKGNG GINTAIAKYALQALNIDQYGLDEIDNKILLTIIDKFRGGPVGLSTIATAIGEDTGTVEEV YEPFLIMEGFIKRTPRGRMATHLAYEHLGRDPYKGNLMEPGLFT >gi|281305539|gb|ADEF01000028.1| GENE 111 154353 - 154826 294 157 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 1 149 1 148 164 117 40 3e-25 MNQKERIGIFVGSFDPFTIGHDSVVKRALPLFDHIVIGVGVNSQKSHMLSEDERIEAITR LYADEPKISVKVFHDLAVDFAKREGATYIIKGVRTVKDFEYEREQADINRHISGIDTIFL FTEPQLASVSSSMVRELLRYGRDVKEFLPVAPKSDKP >gi|281305539|gb|ADEF01000028.1| GENE 112 154874 - 155287 504 137 aa, chain + ## HITS:1 COG:aq_1354 KEGG:ns NR:ns ## COG: aq_1354 COG0319 # Protein_GI_number: 15606551 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Aquifex aeolicus # 22 134 28 144 150 66 35.0 1e-11 MITYNADGVKMPNIKKRETSAWIKAVAATYGRKIGEVGYMFVDDKKILEVNNEYLGHDYY TDVITFDYDEGDTVNGDIVISLDTVRTNAELFGKTYEEELHRVIIHGILHLCGINDKGPG EREQMEAAENKALALRA >gi|281305539|gb|ADEF01000028.1| GENE 113 155452 - 157023 1381 523 aa, chain - ## HITS:1 COG:aq_797 KEGG:ns NR:ns ## COG: aq_797 COG0793 # Protein_GI_number: 15606169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Aquifex aeolicus # 41 361 46 359 408 207 36.0 6e-53 MRRFIACIMFGWVVCTVSAQFNFNFGKNSPIRKLEIAEIAIQNLYVDTVQEDRLVEEAIR GMLNHLDPHSSYTTAKETKAMTEALQGSFDGIGIQFNMMQDTLMVIQTIANGPSEKVGIM AGDRIVSVNDSSIAGVKMAREEIMRRLRGKKGSKVKLGVLRRNISGMLFFTVIRDRIPVN TIDASYLIRPQLGYIRIGSFGATTYAEFMACVSDLKKQGMQHLILDLQDNGGGYLQAAVQ IANEFLHRNDLIVYTKGRRSNRKDYLAKGNGSLLSGKVMVLINEFSASAAEIVTGAIQDQ DRGQVVGRRSFGKGLVQSPIQFPDGSMMRLTVAHYYTPSGRCIQKPYKKGDRKDYALELD QRFKHGELYSADSIHFADSLKYYTLRQKRVVYGGGGVMPDYFVPLDTAKFTSFHRQLAAK SIIINENLKYVDQHRKQLRKKYTSYEQFYQSYEVPQTFIDAVIKAGEEAKLKPKDEAELQ RTLPMLKNQLKALVARDLWGMNEYFRIMNETNDIVLKAVELMK >gi|281305539|gb|ADEF01000028.1| GENE 114 157071 - 159083 1984 670 aa, chain - ## HITS:1 COG:CT661 KEGG:ns NR:ns ## COG: CT661 COG0187 # Protein_GI_number: 15605394 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Chlamydia trachomatis # 29 656 6 602 605 525 47.0 1e-148 MTEKINTKLENSQQNKKSVSPQQQADVVAYTDDNIRHLSDMEHVRTRPGMYIGRLGDGKL PEDGIYVLLKEVLDNSIDEFKMKAGDRIEIDIEDNLRVRVRDYGRGIPQGKLVEAVSVLN TGGKYDSKAFKKSVGLNGVGIKAVNALSAHFEVESFREGKVRKLTFEKGDMKTDKTTKTS DESGTYIYFEPDDTLFKNYSFHDDIVETMLRNYTYLNAGLTIMYNGRRIKSRNGLEDLLN DNMTTDGLYPIIHMIGEDIEIAFTHTNQYGEEYYSFVNGQHTTQGGTHQSAFKEHIAKTI KEFFDKNYEYTDIRNGIVGAIAINVEEPVFESQTKIKLGSTQMAPGGETINKYVGDFIKR EVDNYLHIHKEDCADILEAKIKSSEHERKAMAGVTKLARERAKKANLHNRKLRDCRIHFS DEKNDRKEESCIFITEGDSASGSITKSRDVNTQAVFSLRGKPLNSFGLTKKVVYENEEFN LLQAALDIEDGLDTLRYNKVIVATDADVDGMHIRLLIITFFLQFFPELIKKGHVYVLQTP LFRVRNKRTKIKNKDVIAEADEKLDKKDRKSDFITRYCYSEEERQEAIKELGPDPEITRF KGLGEISPDEFVHFIGPDMRLEQVTLHKNDQVQKLLEYYMGKNTMERQNFIIDNLVVEED IPEEDSTLVS >gi|281305539|gb|ADEF01000028.1| GENE 115 159270 - 160421 1143 383 aa, chain - ## HITS:1 COG:no KEGG:PRU_2474 NR:ns ## KEGG: PRU_2474 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 382 1 384 384 509 61.0 1e-143 MPSIKIKKVESRRDLKKFVDVHYDLYEGNEYDVPNLFMDDMNTLRKDKNAAFEFCEAEYY IAFKDGKAVGRVAAIINHRANEKWNKKSVRFGWIDFIDDIEVSRALLEQVEEYGRSKGMT EIVGPLGFTDMDPEGMLTWGFDKLSTMITIYNYPYYPQHLKQLGGWEVDQEYVEYFLDVP KEIPDKYAKVAEVVENRYNLHIKKLTRRELRTTDYGRQVFGIINETYKDLYGYSELSEKQ IDHYVNMYLRFADLNMITLIEDWNKDKKLIGVGISIPSLSYALQKCRRGRLLPFGWWYLL RAIKFQKTGGGGDLLLLGVLPEYRSKGANALLFTDLIPVFNKYGFTWAESQVELVTNEGV QSQWGPLKPTNHKRRCCYRKEIK >gi|281305539|gb|ADEF01000028.1| GENE 116 160550 - 160678 67 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRYQNCVGQQSWIACSVFITSVFISHIHCYLSLLCHLQIAQQ >gi|281305539|gb|ADEF01000028.1| GENE 117 161285 - 162541 847 418 aa, chain - ## HITS:1 COG:no KEGG:PRU_2473 NR:ns ## KEGG: PRU_2473 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 418 1 385 386 401 49.0 1e-110 MNVETSHFIHQHAEDDVRKLALAAHKYPDVDMPFALQQIAGRQTAQRKLPSWASNDEILY PPHLSMEQCSSEQTAQYKAKLAWQCAQSDFQNKVGEHSSTENTALLKACSLVDLTGGLGV DFSFMALPFHEAVYVERQRCLCDIAQHNLPLLGVNQAQVVCCDGEQYLQTMQPATVIYLD PARRNDNGAKTVAISDCTPNLLSLLTDLLRKSWVTLVKLSPMLDWHQAVVQLNTLSNCVR QVHIIAVNNECKELLFVLSNRWESPLAVHCVNNEQTFVFYPQQTVVSPKMSVPIGSHLIG QYLYEPNAALMKAGCFAEIAQQFQVDKIAPNSHLYVSRHEVEGFPGRQFRIKAISSMNKK MLKTQLASIRQANIATRNFPLSVAELRKRLKIREGGEVYIFATTDVEQNHWLLIGEKL >gi|281305539|gb|ADEF01000028.1| GENE 118 162588 - 163262 400 224 aa, chain - ## HITS:1 COG:ddpX KEGG:ns NR:ns ## COG: ddpX COG2173 # Protein_GI_number: 16129447 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine dipeptidase # Organism: Escherichia coli K12 # 36 208 8 166 193 89 36.0 7e-18 MKKILVWLMLVTTGMTAQTTHRLSPTARSLEKRGYVNVQKLDPSIQVSLMYARPDNFTGT VLYDDLREAYLHPHAAHALVKAQKRLQQLRPDLCLKVYDAARPMAIQQKMWNKVKGTPKY FYVSNPAHGGGLHNYGLAIDLTLCTLKGDTLDMGTKIDYMGAAAHIDKESQLVANRRISK QAQRHRELLRKVMRYAGFKPLRTEWWHFNYCSRAQAKKSYRVIR >gi|281305539|gb|ADEF01000028.1| GENE 119 163400 - 164968 886 522 aa, chain - ## HITS:1 COG:no KEGG:BVU_3872 NR:ns ## KEGG: BVU_3872 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 38 520 11 491 491 406 42.0 1e-112 MVYSCNPTNWLCRCCVAILSLLSANSSAQSYRLHVDTIVPLASAKSIDTLQIALPDSLNG CRWVENAPWNKAKHPWRAAAQVVGINASLLAFDYYVLHANFAKVTSRTLKRNLQLNQWFW DADVFHTNMFFHPYHGSLFFNAARSNGMNFWQSIPYTFAGDLLWEIAGENELPSINDALS TGIGGLAIGECTFRLSNIVYDQRLQGWSRVMREILGAAINPIRGLNRVITGEAWKVRQKH YLYHDKSRFPVHLSFSVGGRYVDTRHNATGEFTSPYVHFEVEYGDAFGQENRPYDYFKTD VALVLGHQQEIVNHLQILGQLFATSVRNAKGMQTRFGLYQHFNYDNANERHGGIPPYQLS EAASVGIGWMCRIPNKAKKVAFQQSIFLNAMLLGGAWSDYLGAPYHRTYNMGSGFTAYSF TTLHLPRRSSLSFDTRFFRMFSWRGYEEVPAGTPHEEFSAQGEHNQTSVWMLRPTLKLPL WKQWGLQLSGTYYHRATHYKYHPDAKATTYEWRMGLLYQLPR >gi|281305539|gb|ADEF01000028.1| GENE 120 165149 - 166450 1350 433 aa, chain - ## HITS:1 COG:BS_tyrS KEGG:ns NR:ns ## COG: BS_tyrS COG0162 # Protein_GI_number: 16080019 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tyrosyl-tRNA synthetase # Organism: Bacillus subtilis # 4 433 3 422 422 371 46.0 1e-102 MTKNFVEELKWRGMLAQMMPGTEELLEKQMVSAYLGTDPTADSLHIGHLCGIMMLRHLQR CGHKPYLLLGGATGMIGDPSGKSLERNLLDSETLYHNQEAIKKQVSKFLDFEGNEPNKAE LVNNYDWMKDFKFLDFAREVGKHITVNYMMAKDSVKKRLNGEANDGLSFTEFTYQLLQGY DFLYLYQKHGIKLQLGGNDQWGNMTTGTELIRRTLGSDEEAFCLTCPLITKADGKKFGKT ENGNIWLDRNRTTPYAFYQFWLNVSDEDAEKYIKIFTSLERETIESLITEHQQDPGRRTL QKRLAQEVTVMVHSQEDLDMAIEASQILFGKATKESLQKLDEATFLDVFNGVPHYTVSKD LLGSTAVDFFTQEGMEIFPSKGELRKLVKGGGVSLNKEKLTAFDQVVTAEDLIDGKYLLV QRGKKNYFLITVK >gi|281305539|gb|ADEF01000028.1| GENE 121 166510 - 166728 140 72 aa, chain - ## HITS:1 COG:SA1613 KEGG:ns NR:ns ## COG: SA1613 COG0759 # Protein_GI_number: 15927369 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 4 72 1 69 85 87 56.0 6e-18 MWTLKWILLVPILFYQKCITPFTPPSCRFTPTCSEYARQAIVKYGPLKGSYLAVKRILRC NPWGGSGYDPVP >gi|281305539|gb|ADEF01000028.1| GENE 122 166749 - 167159 351 136 aa, chain - ## HITS:1 COG:no KEGG:BVU_1188 NR:ns ## KEGG: BVU_1188 # Name: rnpA # Def: ribonuclease P (EC:3.1.26.5) # Organism: B.vulgatus # Pathway: not_defined # 7 133 4 129 130 108 50.0 8e-23 MSPVGSFTLGKEERICSRKLIEKLFNGSDSQSLASFPLRVVYLLTENEAQDVPVKMMVSV SKRHFKQAVKRNRVKRQVREAYRLQKQLITEPMATRPQQQLLIAFIWLADELNTSDEVAK HVAQLLNRIVEKLWKY >gi|281305539|gb|ADEF01000028.1| GENE 123 167166 - 167912 638 248 aa, chain - ## HITS:1 COG:no KEGG:PRU_2296 NR:ns ## KEGG: PRU_2296 # Name: hemD # Def: uroporphyrinogen-III synthase (EC:4.2.1.75) # Organism: P.ruminicola # Pathway: Porphyrin and chlorophyll metabolism [PATH:pru00860]; Metabolic pathways [PATH:pru01100]; Biosynthesis of secondary metabolites [PATH:pru01110] # 1 243 2 244 249 348 69.0 8e-95 MKKILVSQPKPTTEKSPYYDIEREYDVKCDFRPFFKVEGLSAKEFRHQKINILDYSAIVF TSRHAVNHFFTLAKELRVTIPEDMKYFCVIESIALYIQKYVQYRKRKVFFGTTGKIADLV PIMAKHKAEKYLVPMSSVHNDDVKNMLDAKKLKHTECVMYRTVSNDLTEEEVKAFDYDMI IFFSPTGINALQKNLPNFEQGDIKMAAFGPATCKAVTDAGFRLDLKAPDAENPSMTSALK AYLKKHKK >gi|281305539|gb|ADEF01000028.1| GENE 124 167924 - 168946 621 340 aa, chain - ## HITS:1 COG:no KEGG:PRU_2295 NR:ns ## KEGG: PRU_2295 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 339 1 337 338 277 46.0 5e-73 MLQRDSVARIKGVDSAHVQPTKAKKSSQPTPAQVLKWLPKDATPAQQDSAIQANIKPSKI SWSNRPDTLHLPGHPIGKSFRDINLPQYYKESFFSKDSLFHPELDGGRVGVPGDPVPYAV ANDYLITSILLGCFILATIALSKSKPFIIRQAKSFFYVPRGETTSLTETAGEIRSQFFFV LQTCLLLSLILFFYTRTLGSETFVVEHYQVIGIYAIGFFAYYVFNAFVYWFANWVFFDWK KNDQWMKTKLFLVSMEGVILFPIVMLLAYFDLSVSSAVIYSIVIVSLVKILTLYKLSVIF FRQRGSFLQIILYFCALEVIPIFVMWGVFDTINDYLRINY >gi|281305539|gb|ADEF01000028.1| GENE 125 168996 - 170252 1332 418 aa, chain - ## HITS:1 COG:TM1658 KEGG:ns NR:ns ## COG: TM1658 COG0192 # Protein_GI_number: 15644406 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Thermotoga maritima # 1 418 1 395 395 402 50.0 1e-112 MAYLFSSESVSEGHPDKVSDQISDALLDQFLAYDRDAHCAIETFVTTGQVVIMGEVRSKE YVDLQTIARNTIKKIGYTKSEYQFDGDSCGIMTAIHEQSEDIDRGVNRQNEDEQGAGDQG MMFGYAINETENYMPVSLDLAHLIMRVLADIRKEGKEMTYLRPDAKSQVTIEYNDDHTPN RIHTIVVSTQHDQFDEDDARMLAKIKDDVIHILMPRVKAQCDEQTRRLFNDDILYFVNPT GKFVIGGPHGDTGLTGRKIIVDTYGGKGAHGGGAFSGKDPSKVDRSAAYASRYIAKNLVA AGVSDEILVQVSYAIGEAKPINVYVNTYGRSKVQLSDGEIAQKVSELYDLRPKAIEKKFG LRNPIYLETAAYGHMGRQYEVKKKTFTSRYHESKTIEVELFTWEKLDDVARIQKEFGI >gi|281305539|gb|ADEF01000028.1| GENE 126 170451 - 173273 2922 940 aa, chain - ## HITS:1 COG:BB0536 KEGG:ns NR:ns ## COG: BB0536 COG0612 # Protein_GI_number: 15594881 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Borrelia burgdorferi # 29 928 30 921 933 265 25.0 4e-70 MKIRHLFSALLLLCAGMLHAQMQMPPVPVDTAVRMGKLDNGLTYFIRYNNWPEHRANFYI AQKVGSIQEEESQRGLAHFLEHMAFNGSDNFKGNDLIEYLRSIGVEFGSDLNAYTSIDQT VYNIDNVPTTRQSSLDSCLLILRDWSTGLTLDPKEIDKERGVIHEEWRLRTSAQSRMFER NLPKLYPGSKYGVRYPIGLMSVVDNFSPKELRDYYEKWYHPSNQGIIVIGDVDVDHTEAM IKKLFGGIKNPVNQAPVLNEPVPDTSEPIVIIDKDKEQRTSNVQVMFKHDTYPDSLKQSV DYILYDYVRGAALNMLNNRYTEAAQKADCPYVGAGASDGNYIFAKTKDAFSIFAQPKDPS QLATALKAAVVEARRAVEFGFTATEYARYKANLLSSLDKAYSNKDKRKNTQFFNECLGYF LTNEPMPSIDYTYQLMKQIVPAIPVEAVNQYMSQIIPKNDSNIVIVNFNNEKEGNVYPTR EELLTALMQAKQAKVTAYVDNVKNEPLITKKPTPGKIKSEKKNALLGYTELKLSNGATVV IKHTDLKKDQVLLSGEGFGGSSLYGAKDYVNANFFDQVIGASGLGQFSSTELQKTLAGKI ANVDLGMGFKKMSVDGSSTPKDVETMLQMLYLYFTNINKDEKSFANLIEQYKVSLKNRSL SPEKALQDSLTATLYGHNPRLKPVEVADLQHVSYDRILEMAKERTANAAAWTFTIIGNFD EASLRPLICQYIASLPSQKNIVKGKRVTFLQKGKIDNTFKRKMETPKAISYKIWFNEDMP YTLENDIKASIAGQVLSMVYLKKIREDASAAYTCGAQATASIEDDYHLIQMLGYCPMKPE KKELALSIMEEAVKDMRQTVDADMVAKIKTVMLKQADDVAKTNGYWNGVIGMYRKYGIDT HSDYKKLVSAQTPQTISDFMKEFLKSNNYITVTMLPDESK >gi|281305539|gb|ADEF01000028.1| GENE 127 173729 - 175183 1053 484 aa, chain + ## HITS:1 COG:STM0035 KEGG:ns NR:ns ## COG: STM0035 COG3119 # Protein_GI_number: 16763425 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Salmonella typhimurium LT2 # 1 453 37 467 497 177 29.0 3e-44 MCDDMGYGDLGCYGQPFIETPHINQLATEGMRFTQAYAGAPVSAPSRACMMTGQHTGHTK VRGNEEFWKDVPMVKYGENEDFSRVGQLPYDAHHVIVPEILKRQGYRTGMFGKWAGGYEG SESTPDKRGIDEFFGYICQFQAHLYYPNFLNEYSRERGDTAVSRLVLDKNIRYPMSGKLY YQRPEYSADLIHQRAMNWIDAQDSQHPFFGIFTYTLPHAELVQPDDSLLAYYKRKFFVDK TWGGQPHSRYNATEHTHAQFAAMISRLDIYVGQIMQKLKEKGLDDNTIVIFTSDNGPHEE GGADPAFFGRDGKLRGLKRQCYEGGIRIPFIVRWRNHIAAGTESDLQIAFYDLMPTFCEL AGVKNYQKRYANKKQKVDYFDGISFAPTLLGQPQPKKHPHLYWEFSETNQIGVRMGDWKM VVIKGIPHLYDLSKDLHEDHDVAAEHPEIVQRMTQIIQEEHVDSPRFPVTLPATIQASEN KKQR >gi|281305539|gb|ADEF01000028.1| GENE 128 175370 - 177304 2106 644 aa, chain - ## HITS:1 COG:BH2384 KEGG:ns NR:ns ## COG: BH2384 COG0513 # Protein_GI_number: 15614947 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Bacillus halodurans # 21 567 8 524 539 364 39.0 1e-100 MCIHGIAVPLHPIKEKNLKTFEELGVSEEIRRAIEELGFVHPMPVQEEVIPYLLGNKNDV IALAQTGTGKTAAYGLPLLQKIDVASKHTQAIILSPTRELCLQIADDLKDFAKYIKNLHV EPVYGGASIVTQIHALKHGAQIIVATPGRLIDLMNRGVAKLDHVNNVVLDEADEMLNMGF SESINTILAGVPDDRNTLLFSATMSKEIEKIAKTYLRDYKEIVVGSRNEGAENVNHIYYM VNARDKYLALKRIVDYYPRIFAIIFCRTKIETQEIADKLIKDGYNAEALHGDLSQQQRDL TMQKFRQHVTQLLVATDVAARGLDVDELTHVINYGMPDDTENYTHRSGRTGRAGKKGTSI CIIHTRERSKVRAVEKIIGKEFVDGTLPTAQEICAKQLYKAMHDIEKIDVDEEQIAPFMV EINRHFEYVDKDDIIKKIVSLTFGRFLAYYANAPEIEKPSLKRDDRGEEKGMRGGRKARS ERGGGRSRTPERGYRRLFINLGKDDGFYPGEVMQFINQHVKGRQQVGHIDLLGKISYIEV PEKDANKVMRSLSGATYKGREVRCNDANEEGHGRKAQATRGGGRAAGRRAEGGRKNGKSA KRPSYQQEDTGDWRQFFQHPEVKFKGEIPDFSEEGWARRKPRKG >gi|281305539|gb|ADEF01000028.1| GENE 129 177545 - 178426 773 293 aa, chain + ## HITS:1 COG:TM0415 KEGG:ns NR:ns ## COG: TM0415 COG0524 # Protein_GI_number: 15643181 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Thermotoga maritima # 4 287 2 280 286 124 30.0 2e-28 MTDICCLGHITRDKNTTHKQTVSMSGGTAYYVAYAFNHLPSKVRFQLVTKVGSEDVPVTQ EMKEAGIDVKVYPSKHTVLFENIYGENQNTRSQRVLAKADPFTIEEMKPLTGKIYHIGSL LNDDFSPEVVKYLSTKGQISIDAQGYLREVRGQDVHPIDWKDKLEILACTDIIKVNEHEM EVITGLKNARQAAKQLHAWGVKEVIVTLGSEGSIIYANDRFYDIPAYAPREVVDATGCGD TYSAGFLYCRSQGIGFEEAGKFAAAMCTLKLEHSGPFDRSIEEVRAIIEKHEK >gi|281305539|gb|ADEF01000028.1| GENE 130 178522 - 179562 1090 346 aa, chain - ## HITS:1 COG:ECs3050 KEGG:ns NR:ns ## COG: ECs3050 COG2855 # Protein_GI_number: 15832304 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Escherichia coli O157:H7 # 12 332 19 337 349 227 45.0 2e-59 MFSEKRSSMLHGVLLITLFSLAAFYIGDMAFVKNLSFSPMIVGIILGMLYANSLRNNLPD TWVPGINFCSKRILRIGIILYGFRLTFQDVTAVGLPAIVIDAIVVTVTVCGGVFIGKLLR MDRGIALLTSVGSGICGAAAVLGAESALQVKPYKTAVAVSTVVIFGTLSMFLYPVLYRNG IFDLSPDQMGLMTGATVHEVAHVVGAANAMGKDVSNSAIIVKMIRVMMLVPVLLILGWNT ARYLSKNNEQGTSKAKITIPWFAILFLVVIGFNSFNLLPVSWVEWINQFDTFLLTMAMTA LGAETSFDKFKKAGAKPFLLAAILFVWLIGGGYCLAKYVVPMMMNI >gi|281305539|gb|ADEF01000028.1| GENE 131 179671 - 180621 952 316 aa, chain - ## HITS:1 COG:SA1328 KEGG:ns NR:ns ## COG: SA1328 COG4974 # Protein_GI_number: 15927078 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Staphylococcus aureus N315 # 11 300 4 294 295 213 40.0 5e-55 MESNKESVANVVKAYTRYLKLERNYSPHTLDAYQHDLRWLLDYCENAGMHPKDMQLKDLE LFAGQLHEHHIGPTSQARILSGVRSFYRFLVLDGRIEQDPTELLESPRLGEHLPEVLSTE EVDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLKLSNLYLEEGFVRVMGKGSKE RLVPISSKAIRELQYWFVDRNLMKIQQGEEDYVFLNRRGKHLTRTMILIMLKRQAVAAGI TKTISPHTLRHSFATELLKGGADLRAIQAMLGHESIGTTELYMHIDTTTLREEILQHHPR NMKEKDDDSEEQGDEQ >gi|281305539|gb|ADEF01000028.1| GENE 132 180739 - 181146 258 135 aa, chain + ## HITS:1 COG:AGc2456 KEGG:ns NR:ns ## COG: AGc2456 COG0757 # Protein_GI_number: 15888657 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase II # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 133 23 157 162 147 53.0 8e-36 MIINGPNLNLLGKREPDIYGNRSFDEFLQKLRHDFTQMEIDYYQSNIEGELIDKLQEVGF SYDGIVLNAGAYTHTSIALLDCIRSIATPVVEVHISNVHAREEFRHKSMISSACLGVIAG FGLNSYKLAIEAVVG >gi|281305539|gb|ADEF01000028.1| GENE 133 181286 - 181927 606 213 aa, chain + ## HITS:1 COG:aq_1507 KEGG:ns NR:ns ## COG: aq_1507 COG4122 # Protein_GI_number: 15606661 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Aquifex aeolicus # 4 209 8 211 212 155 41.0 4e-38 MNTELESYLLAHIDAEGDYLYRLYRATNIHTVHGRMASGHLQGRLLKMLIEMIRPKNVLE VGTFSGYSAICMAEGLDEDGRLYTFEINDEMEDFTRPWIENSPVASKIHFIIGDANVEAP KLNVVFDMAFIDGDKRTYVETYETVLKLLRPGGFILADNTLWDGHVIDPHYQHDAQTQGI AQFNDFIAQDARVEKVILPIRDGLTIIRKKLND >gi|281305539|gb|ADEF01000028.1| GENE 134 181962 - 182918 462 318 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880567|ref|ZP_06289274.1| ## NR: gi|282880567|ref|ZP_06289274.1| putative membrane protein [Prevotella timonensis CRIS 5C-B1] # 14 318 1 305 305 497 99.0 1e-139 MVTTPPTKPQARILELDFLKCVFILLMIVFHLVYIGNRYPVAKAFVYTFHMPGFLIISGY LLHIQKPVPQFLRYIQWIFVPYLLMESGYVVMASVLPIREHIQQLTFGLFLDKLFLHPLG PYWYLHTLMLCGIVTYVVAQFASHHRVWMLLGMLFCLWVLALLGLVTWINAVYFCVGVAL RLYHRPFVDTFHPAWWSFIGIVLVATCVPNALQRHTIGGMLVVYLVISFLLWLYPRLPKG VAKISLFIGRNSLILLLFSPMFTVLSKLFQSYLLFEPSGMLFMLVALLFTVVGSFTVAYI LQKLQVSRYVFGQSRIIK >gi|281305539|gb|ADEF01000028.1| GENE 135 183011 - 183346 344 111 aa, chain + ## HITS:1 COG:BS_rbfA KEGG:ns NR:ns ## COG: BS_rbfA COG0858 # Protein_GI_number: 16078728 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Bacillus subtilis # 5 111 4 109 117 60 37.0 6e-10 MQETRQNRIARLLQKELAIIFQSQTRATHGVMVSVTRVRVSPDLSVCTAYLSIFPSEKGD EILENINKNNKSIRYELGSRMRNQLRIIPELRFFIDDSLDYIEHIDELLKK >gi|281305539|gb|ADEF01000028.1| GENE 136 183385 - 184623 1048 412 aa, chain + ## HITS:1 COG:CC1930 KEGG:ns NR:ns ## COG: CC1930 COG4591 # Protein_GI_number: 16126173 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ABC-type transport system, involved in lipoprotein release, permease component # Organism: Caulobacter vibrioides # 7 349 17 354 426 123 27.0 9e-28 MNFPFFVSRRYLFSKKSTNAINVISIISMIGVAVATMSLVIVLSVFNGFHDLVASFLTNF DPQLEIVPTQGKSADAQDKLLKQVKQLKQVAISTENVEEMAIAMYQDKQAMVTIKGVEDN FDSLTHIKDILYGDGEYQLHAGNLEYGVLGIRLAQSLDVGASWDGFIKIYAPKRIGQLDM SNPGDGFVVDSLLSPGVVFSVNQAKYDKGHIITSIDFARQLFDMKGRITSLELRLKAGSD LKETQKEIQHIVGDKYKVLDRFEQQADTFKIMQIEKIIAYFFLTFILVIACFNIIGSLSM LMIDKKEDVITLQNLGASNQQITKIFLYEGRMIAVIGAVVGIALGLLLCWLQQTFGLVSL GHQAGSFVVNAYPVSVHYGDVAFIFLTVIIVGWAAVWYPVRYFSKRLLNANQ >gi|281305539|gb|ADEF01000028.1| GENE 137 185254 - 188796 3413 1180 aa, chain - ## HITS:1 COG:CC0447 KEGG:ns NR:ns ## COG: CC0447 COG3525 # Protein_GI_number: 16124702 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Caulobacter vibrioides # 174 713 31 536 757 271 33.0 6e-72 MKKTLYTILFLLLGSLCNLQAAEFPKISTADNTFWYFIQFANSQNVLTSQGDGVKVQTHS MTGQPAQLWKIEGSESAGFTLTDKTGRHLYLNSTAKQGMAFASSKHQATKLKIKSLPSGK YEVTPYDNGAVALNQWTGPGVGHEVGLWDVGDVNNPLSFTPESALEAYRNLPRLIPYPSS LTLVEGETFELSQLHSIAYTNDVTQQQATEFAKQLAATAGIQLSVEPCTTDRKDNAISVV IDNTLPDEGYTFVVDAKGVLIKTKTDAGYFYALQTIKQLLPNAFYEKNPVSGATWTLPQL FINDAPALDHRGFMLDVARHFFDKHEVMRILDIMAFYKMNRFHWHLTDDQGWRVEIPEYP KLTTVGSKRAGSFVNAGSSQQFFDDTEYGEGMYYTLDDLREVVKYAQERNITIIPEIDLP GHMVAAVAAYPELSCDPTKTYRVRIPGGISKDVLNIGKDSTIDFLKCVLGHVATVFPGPY IHLGGDECPTDQWRNNADCLERVRAEGLSGVEQLQSWLVELLGEYLYDNYGKQIIVWDEL MAHWPATNKVKPVIMAWNHINKSADAADLGFKSVVVPYQSLYLDMMQVSKSQADVNEIYQ GGWGDGYVNSVPTVYSVNPVSALSGREDYCLGVQGNMWTETCNDNTQLEYQLLPRLLALA ETGWLPESKKNWVSFYQRLQKHDELLDRMGYVYARHYIEPNQDALQTAIQEAQTLLDTTT PGEAGYVSAEEHQTLSEILQKAKDGTADVRVLGNAIAHFKAADVAQPQENEVYQIVSAST YYKKRYVGSTMYQNQQGVRFHYTPQNEPEELWQFVKTGKGWKIRNAVTQQYMQLADYNKA VRMNATEATVFRLNKATVPAKQYDYVAGAMVMTNADNYSATATGSTPRLFGHPSGDVVSF DDPMLCNPGTWRLVRVTQYKPLLEALVKKCDKLITGNVPHQPGSFTDEAVSFLNAKVIEP AHAHLADGKAVSHAEYMEYAALYQQFLSFPRTSIVESLDEAYWYKIRNGYFTDYYAKLNP ADNNVYPVRTTATTDDLLWRFVKNADGTVGIISRVGEVPACVESSVIDQTIHAGTTYSWK LSPYTTDEGPSGFNIIEASGTYSWYTNPNAFQTVLLKPRHWGASIWTFEKQAEKVTSIPH TAADATQDSYYNLQGVKVGTDASKLQQGVYLCKGKKVVVR >gi|281305539|gb|ADEF01000028.1| GENE 138 188894 - 192118 2372 1074 aa, chain - ## HITS:1 COG:CC0380 KEGG:ns NR:ns ## COG: CC0380 COG2273 # Protein_GI_number: 16124635 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucanase/Beta-glucan synthetase # Organism: Caulobacter vibrioides # 786 1026 24 296 301 130 31.0 1e-29 MAGILFPLTTTAQSIGFEQQDYKSIGVYDTWEHSPFRTGKLQGNVGIIANPHTETDEILG VAPNPSAKVLAFQRSRFASNTFGARIDLQQPLKLKPSLQYVHVMLHKPVAGRVMLIGLGK RVERNDQSKETEQFWVLSTNKVEPDQWVDAVFPIKGAEGVDVHSLVVVPDNESPHMLTED FAVYIDCIEVNDKPTTQTQREDYPLNINNKAHYTRTDRGLLSISLNGKEATVAGSITKQT PVYKSIDQVDFIAKAGETLQPAFKYNGTWMHGYVYLDYGRDGRFDTNLAADGKPVQGSDV VTYSFYAQNPNDDSQGFNSLGQSISGNDRNVLNPPAFTLPADMQPGFYRMRYKVDWNCID AGGNIASSNSIIKNGGAIADIRLNVHRDQVRIMNAQRNGDVLDVDGKSLDKDVPFGKPVT IKMRPENGFTYKGIRVRHGYNLPGDSLIHGVAQYRDVIVKKSSFDENDSYTLPAELIDGD VVVEGLFVSIGSPEANDFYSIGFDKNQPNKHASRRLNAVRLNQQEVNIDNPKNVYHDLTQ HVFVASAGTQVAPGVNYSGSWMQTLVYVDKNKNGYFNWKQPLDGGRLTPENELVSFSAAT CNGQPYSSDGQHLQSLDRLNAPKFTLPDNLETGHYMMRYKIDWDNVDPEGNTSAGNHIAN NGGAIADVRLFVHHGEQGTVTCASKNGTVLTLEGQTVDGVKVPYGQSFTVQMKPDKGFKL GSVKVLHGNLAATDSLVNGVAQYVQTVLDASACRYGLLDIAPGLLDGDLQLQPSFVKMGQ NETDEDDYVMVFNDEFNQADGTFPDPKRWKPSIRYGAAWNRYISSDPKVAFIKDGCLVLR CFKNPDKTKDPADMLSGAMETRDLFSFKYGRVDVRMKTTRHAGNFPAAWMMPQPPCAGWP NAGEIDIFETINMENKAYHTVHSNWTYNLHQRNNPTSGFSGYVDVDNFHVYSLEWNEEEL IWYVDGVEKGRYHKSSNDNDLQKGQWPFNAPFYLILNQSVGNGQWASNPDMDFVYESRVD YVRVFQPKKLTGINHVINADTAPISKGYYDLQGRKTDHPMKGVYIHDGKKIVIK >gi|281305539|gb|ADEF01000028.1| GENE 139 192206 - 193753 1294 515 aa, chain - ## HITS:1 COG:SP2146 KEGG:ns NR:ns ## COG: SP2146 COG3669 # Protein_GI_number: 15901959 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Streptococcus pneumoniae TIGR4 # 51 515 6 448 559 216 31.0 1e-55 MRDLSQRIFMKKNYLLTLAMTAAFMTVQAQSESSFRLAQQSLSNPDNEPAPVFPLPTERQ MKWQETEYYAFFHYGMNTYTNMEWGKGNEAESLFAPTGKPDPRQWLEAVRDAGMTGGIAV VKHHDGFCLWPTETTKHSVVRAGNENGRSLNLPESFAAAAKALDMKYGFYVSPWDRNSAL YGTPRYVSEVFLRQCAELAQYGTDQFEMWFDGANGGDGYYGGRNETVSVDRDTYYDVPNL RDSIHKVCPDIILWGVGGEARWIGNEQGWAGETNWSPEDRGYAPEGNGMYGTENGWIWFP GESDAKFTDKGWFWHEGERPMSAERTFQMYLETVGRNSTLILNCPPDKRGLLPDATVKAL KASGDLLRKRLGNDLARSATVTVTDQRGNGAHRDYKPSNMIDANKDTYWAASDGVTKGTI TLTWNQPQTIRYVSLMEYIRLGQRIRKFHLEISEDGQTFKPVAQGVTTTTVGYKRIVPLN GSTAQSYGTGYKVKALRIVIDDAKACPTLHTVSVF >gi|281305539|gb|ADEF01000028.1| GENE 140 193969 - 194166 135 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKHRPYLTAPKKACTLFVVYRLESYGQTTNLHVLTQINCDTTPQESSLYPFPMRMVQKPS DVLGC >gi|281305539|gb|ADEF01000028.1| GENE 141 194185 - 194943 822 252 aa, chain - ## HITS:1 COG:Cgl0368 KEGG:ns NR:ns ## COG: Cgl0368 COG0479 # Protein_GI_number: 19551618 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Corynebacterium glutamicum # 5 251 1 245 249 219 43.0 4e-57 MSKNISFTIKFWRQNGPKDKGHFDTHEMKNIPDDTSFLEMLDILNEELIKDGKEPFVFDH DCREGICGMCSLYINGVPHGKTERGATTCQLYMRRFNDGDVITVEPWRSAGFPVIKDCMV DRAAFDKIIAAGGYNTIRTGQAQDANAILIPKENADEAMDCATCIGCGACVAACKNGSAM LFVSSKVSQLALLPQGRPEAAKRAKAMVLKMDELGFGNCTNTRACEAVCPKNESIANIAR LNREFITAKLKD >gi|281305539|gb|ADEF01000028.1| GENE 142 195073 - 195432 247 119 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|194334574|ref|YP_002016434.1| S23 ribosomal protein [Prosthecochloris aestuarii DSM 271] # 1 115 1 112 118 99 51 9e-20 MKTTHKDLIVWQKSIILVKQIYQVTRCFPHEELMGISSQMRRAAISIPSNIAEGYGRATT KELLHFLYIALGSASELDTQIILCKELGFIIDLEVYQELYQLNIEVLKMLTALIKSQQQ >gi|281305539|gb|ADEF01000028.1| GENE 143 195527 - 197506 2397 659 aa, chain - ## HITS:1 COG:Cgl0367 KEGG:ns NR:ns ## COG: Cgl0367 COG1053 # Protein_GI_number: 19551617 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Corynebacterium glutamicum # 2 658 26 673 673 587 47.0 1e-167 MTQIDSKIPEGPVAEKWTNYKAHQRLVNPKNKLKLDVIVVGTGLAGASAAASLGEMGFNV FNFCIQDSPRRAHSIAAQGGINAAKDYQNDGDSVYRLFYDTVKGGDYRAREANVYRLAEV SNAIIDQCVAQGVPFAREYGGMLANRSFGGAQVSRTFYAKGQTGQQLLLGAYSSLMCQVH AGKVKLYTRYEMEDVVIIDGRARGIIAKNLVTGKLERFSANAVVIATGGYGNAYFLSTNA MGCNCTAAVQCYRKGAYFANPSYVQIHPTCIPVHGDKQSKLTLMSESLRNDGRIWVPKKI EDAKALQAGTKQGWEIPEEDRDYYLERRYPAFGNLVPRDVASRAAKERCDKGFGVNNTGL AVFLDFSESINRLGLDEIMQRYGNLFEMYEEITDVFPGDMANEINGVKYYKPMMIFPAIH YTMGGIWVDYELMTSVTGLFAIGECNFSDHGANRLGASALMQGLADGYFVLPYTIQNYLA DQAVWPRLSIDLPEFEEAEKKVQSEIDRLMNIKGKRSVDSIHKELGHIMWEHVGMGRTKE GLEEGLKMIADLRKEFDTNLFIPGTKEGLNVELDKAIHLRDFLLMGELVAYDAISRNESC GGHFREEYQTPEGEAKRDDENYFYVGCWKYQNNDETAPELIKEPLEYEAIKVQTRNYKN >gi|281305539|gb|ADEF01000028.1| GENE 144 197541 - 198227 425 228 aa, chain - ## HITS:1 COG:no KEGG:PRU_2433 NR:ns ## KEGG: PRU_2433 # Name: not_defined # Def: succinate dehydrogenase/fumarate reductase cytochrome b subunit # Organism: P.ruminicola # Pathway: Citrate cycle (TCA cycle) [PATH:pru00020]; Oxidative phosphorylation [PATH:pru00190]; Butanoate metabolism [PATH:pru00650]; Metabolic pathways [PATH:pru01100]; Biosynthesis of secondary metabolites [PATH:pru01110] # 1 227 1 228 229 291 71.0 8e-78 MWLINSSIGRKVVMSVTGVALILFLTFHMSMNIVALFSGDAYNTICELLGANWYAVVATI ALAALTVCHIVYAFILTAQNRRARGNERYAVTQKSSKVEWASQNMLVLGLIVVLGMILHL YNFWYNMMFAEIFHIADPLGNPADGFGYIRATFSQPLYVVLYIIWLCALWLHLTHGFWSA MQTLGISNKIWFNRWKIIGEVYATLLMLGFLVVVLAFAFGCAPSLCCA >gi|281305539|gb|ADEF01000028.1| GENE 145 198955 - 199197 94 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTKNYVDGMLSFVCIYRFVFHRIDISSCSIRLFRLMIFYNENQQKYSRCSLGSMPHKLI INAEFYLQSASQNSRQNIQG >gi|281305539|gb|ADEF01000028.1| GENE 146 199377 - 201248 1284 623 aa, chain + ## HITS:1 COG:HI0582 KEGG:ns NR:ns ## COG: HI0582 COG0445 # Protein_GI_number: 16272526 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Haemophilus influenzae # 5 623 7 621 629 567 46.0 1e-161 MIFQYDVLVIGGGHAGCEAATAAAQLGAKTCLVTMDMNKIAQMSCNPAIGGIAKGQIVRE IDALGGHMGMITDATSIQFRMLNKGKGPAVWSPRAQCDRSKYILEWRTVLDHTPNLDIWQ DEACELLTANSEVTGVRTVWGVELYAKSIIITAGTFLNGLMHIGRKKLPGGRCAEPAVYH LSESIAQHGITVQRMKTGTPVRIDARSVHFEDMEVQDGENDFHQFSYMSGSRNLKQLPCW TCYTTPESHEVLRKGLPDSPLFNGQIQSTGPRYCPSVETKLVTFPDKDRHPLFLEPEGEN TNEMYLNGFSSSMPLNIQIEALRQIPAFREAKIYRAGYAIEYDYFDPTQLKPSLESKIVK GLFFAGQVNGTTGYEEAAGQGIVAGINAAIHCFGGDPFVMKRDESYIGVLIDDLTTKGVD EPYRMFTSRAEYRILLRQDDADARLTEKAYQLGLAKRDRFDWWTQKKESISHLMDYCNNT SIKPKEINEMLERNGTSTLRMGCKISELIARPQISIQLLAEMIPSLSDEICKIPNRKSEI IEATEIKIKYKGYIEREKIIAEKMHRLENIRIQDRFDYDQLHELSTEARQKLKRINPETL AKASRIPGVSPSDINVLLVLLGR >gi|281305539|gb|ADEF01000028.1| GENE 147 201329 - 201859 549 176 aa, chain + ## HITS:1 COG:YPO3123 KEGG:ns NR:ns ## COG: YPO3123 COG0503 # Protein_GI_number: 16123288 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Yersinia pestis # 4 153 13 162 187 149 47.0 3e-36 MNNKLLLDNLRCIPDWPIKGVNFRDVTTLFKNADCLRTISDEMYELYKDKGITKIVGIES RGFVMSSAVAIKLGAGIVLCRKPGKLPCETVQESYAKEYGIDTIEIHKDAIDENDIVLLH DDLLATGGTMKAACDLVKKFHPKKIYCNFIIELINENLNGREKFDDDIEITTLIQI >gi|281305539|gb|ADEF01000028.1| GENE 148 202051 - 203892 1140 613 aa, chain + ## HITS:1 COG:lin1197 KEGG:ns NR:ns ## COG: lin1197 COG0322 # Protein_GI_number: 16800266 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Listeria innocua # 13 591 6 573 603 405 40.0 1e-112 MTKEGNIERISKLKNIVDSIPERPGSYQFFDKEGNIIYVGKAKNLKRRVSSYFLKEVDRF KTKVLVSKIHNITYTVVNTEEDALLLENSLIKKYNPKYNILLKDGKTYPSICITNEWLPR IIKTRQIRKGNGSYFGPYTQISHLYAVLDVINKIYKPRTCTFPITPAGVKEGKYRACLKY HIGNCLAPCIAKQSHEDYMQNIEQAREILKGNTREVRDILYQMMLKKSEELKFEEAQILK DKYDILNTFVSKSEVVSYTIKDVDVFTLTEDEGKKTAYVNYMHVKNGTINQSFTIEYKSK IEETKEEILITAIQELRSRFESKAKELIVPFDINWHLHDCIFTVPQRGDKKHLLDLSEMN AKQYKFDRLKQAEKLNPEQRQTRLMKELETQLNLPTLPFHIECFDNSNISGTNAVAGCVV FKGLKPSKQDYRKYNIKTVEGPDDYASMKEVVRRRYQRMIEEQTPLPNLIITDGGKGQME VVRQVVEDELGLHIPIAGLAKDNRHRTNELLYGFPPQVIGMKADSELFHILTRIQDEVHR YAITFHRDKRSKQALHSELDNIKGIGIQTQKQLMKALKSVKKIKEADLQTLTNIIGKSKA NIIFQYFHEKERT >gi|281305539|gb|ADEF01000028.1| GENE 149 203873 - 204088 97 71 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKNAHNVKIEVHMKRCKSRSYISYLLVYQPLTQIRLGDVNRSLPIIYKQTNGVNGHPTR LSANRCPTKNL >gi|281305539|gb|ADEF01000028.1| GENE 150 204170 - 204598 151 142 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKTWIQILLLIVGMTLGHHTTCKAVPSVHGYQKETHKELSDVQQKLNDKYQLYHETLSDQ ERGTALLTDSNQSTRINAPRPQRYLPPYLQLSKLNAYKKSTEAWHNKLHLWRKGHKNSHS TTPISTRVPVDYYVIALRHIIR >gi|281305539|gb|ADEF01000028.1| GENE 151 204640 - 205080 464 146 aa, chain + ## HITS:1 COG:no KEGG:Fisuc_1691 NR:ns ## KEGG: Fisuc_1691 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 10 124 9 123 147 62 26.0 6e-09 MYDFIHVLQIKDSKKMAKFKNLEMSSTLSTNPDITVSNGFLGFGAKAIYTPTNTPLKAII NYYNAEDGEKLVKLLQMPEEQIAEKAEKMQMPQKQSMSNYRLEACLTADKQFIAIQMFGY ADFKNTPLHELCTYKGKTAESIINLL >gi|281305539|gb|ADEF01000028.1| GENE 152 205544 - 205996 542 150 aa, chain + ## HITS:1 COG:SPy1980 KEGG:ns NR:ns ## COG: SPy1980 COG1490 # Protein_GI_number: 15675771 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Streptococcus pyogenes M1 GAS # 1 147 1 145 147 150 52.0 6e-37 MRIVIQRVSEASVSIKNTMKSSIQQGFLILLGIGEEDNEEDIEWLVKKVVNLRVFDDEQG VMNKSILDVNGEILVVSQFTLMASYKKGNRPSYIRAAGHEISIPLYQQFCKRLSAQLGKE VGTGEFGADMQVKLVNDGPVTICMDTKNKE >gi|281305539|gb|ADEF01000028.1| GENE 153 206027 - 206356 378 109 aa, chain + ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 5 99 6 101 105 87 50.0 7e-18 MEIKEAQQQVDRWIKEYGVRYFSELTNMACLTEEVGELARIISRTYGDQSFKPGETPNLA DEMADILWVLICLANQTGVDLTEAFEQNMKKKTNRDKTRHINNPKLKQQ >gi|281305539|gb|ADEF01000028.1| GENE 154 206353 - 207303 982 316 aa, chain + ## HITS:1 COG:mll4784 KEGG:ns NR:ns ## COG: mll4784 COG0274 # Protein_GI_number: 13474008 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Mesorhizobium loti # 71 309 86 328 348 175 38.0 1e-43 MTVNKNIQPTKEQRNAKNAPKQTVDKYEQALKKYNTNLNDDEVRETVKKLIEEKVHTNDT PEVKKFLFGSIELTTLKCTDSDESIMAFTEKVNQFDSQYADLPHVATICVYPCFAQVVRD TLEVEGVEIACVSGSFPSSQALIEVKVAETALAVKDGATEIDIVMPVGKFLSGNYEEMCE DIQELKETCGNAAMKVILETGCLKTASNIKKASILSMYAGADYIKTSTGKEKVAATPEAA YVMCQAIKEYYDETGIQIGFKPAGGINSVMDALIYYTIVKEVLGEKWLTNKWFRLGTSRL ANMLLSEIEGKEVKFF >gi|281305539|gb|ADEF01000028.1| GENE 155 207394 - 208758 1010 454 aa, chain - ## HITS:1 COG:MA2933 KEGG:ns NR:ns ## COG: MA2933 COG1073 # Protein_GI_number: 20091752 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Methanosarcina acetivorans str.C2A # 1 451 1 489 496 262 34.0 1e-69 MKTRFLTFMLLLCASVCSSQAQKLEGSWTGKLSVQGTQLTLVFHVEKDKNNGFIVTMDSP DQSVKGVPATVNSLTADSVDIAISSIGARYLGKQQGDYIQGTFTQFGRAFPLLLNRGVEE LKRPQTPHAPYPYQTKEVTFQNAKANAVFSGTLTYPVGYEQINKQKVPVVLMVTGSGQEN RNEEIFDHQPFLVLADYLARHGIASLRYDDRGFAKSTGDASQSTMKDNAEDARCGFNYLK SLKKFGKIGVMGHSEGGSIAMMLAAEGLPDFIVSLAGVAGRGDSLMLKQVYQAMEARGGA SFACDYCKVLGAIYAYRNAKKDISRPEAVLDSLLKQTNVSLPALSRQSLLPVITMQTPWV LDFIATDMACYLPKIKCPVMAVNGSKDVQVDAHDNLSALRKGLKPNKKNLIKEYEGLNHL FQHCTTGQTTEYRLIEETFAPEVMQDIVDWIKAL >gi|281305539|gb|ADEF01000028.1| GENE 156 208836 - 209813 874 325 aa, chain - ## HITS:1 COG:NMA2161 KEGG:ns NR:ns ## COG: NMA2161 COG0142 # Protein_GI_number: 15795032 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Neisseria meningitidis Z2491 # 1 244 2 246 324 176 40.0 5e-44 MDYLSLIQHPITQELSDFNQLFEESLSHADGLLSQALSHIRQRTGKRMRPMLILLIAKNF GGVTSIAQHAAVGLELLHTASLVHDDVVDESGERRGQASVNATYDNKVAVLVGDYILSTA LLQVSFTHSEAIIQNLANLGRTLSNGEILQLSNIQNQDISEEVYYQVIKQKTAALFESCA VIGAQAGKATPEEVEAARQFGQTLGIIFQIRDDIFDYFESKEIGKPTGNDMAEGKLTLPV IYALNSTRNATMLQLAHKVKDNTVTSDEIVQLVAFTKQQGGIEYAEQRMGELHQQTLDYI DKHVTDVDIKTALQAYIDYVVKRTK >gi|281305539|gb|ADEF01000028.1| GENE 157 209966 - 212728 2303 920 aa, chain + ## HITS:1 COG:YPO0017_2 KEGG:ns NR:ns ## COG: YPO0017_2 COG0749 # Protein_GI_number: 16120370 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Yersinia pestis # 286 920 12 645 645 510 45.0 1e-144 MEKLFLLDAYALIYRSYYAFINSPRINSKGLNTSAIMGFCNTLNEVLTKEQPTHIAVAFD HGLTFRNEAFPAYKAQREATPEDIKKSVPIIKQILGAYHIPCLQVKGFEADDIIGTLAMK SGKKGIDTYMLTPDKDYGQLVGEHVWMYRPRHGGGYETLGEKEICAKYSIDSPLQVIDIL ALMGDTADNFPGCPGVGEKTAIKLINQFGSINEMLQRTQEIKGKLREKVENAIEDIKMSQ FLATIRTDVPIDLKLDDLQVEEPNETELAKILHELEFKTLANRMLNKSKNSTKNTNKQLN LFEESSPNSQVDPKNKSFESLKTVSHEYKLIDNEEEMRKLCDFFLTNKILSLDTETTSTN AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLFKPAYENEAILKVGQNIKYDMEVL SRYGIELKGNLFDTMIAHYLLQPELRHNMDYMAEVYLRYQTVHIEELIGPRGKGQKNMRD LAPNDIYEYACEDADITLQLKNILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDT KALQEVSESFTKRMNDLEAQIHQLAGESFNVSSPKQVGDILFEKLQIAEKPKKTKTGQFV TSEEELQKYATGNEIVTLILDYRGLKKLLGTYVDALPKLINPQTGHIHTSFNQTVTATGR LSSSDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIEAFQ EGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGEAKQLI DGYFTTFPQVQSYMEQAKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNAINAPI QGSAADIIKVAMIRIYERFKRENIQSKMILQVHDELNFSVLPSEKEQVERIVLEEMQNAY QLKVPLVADAGWGHNWLEAH >gi|281305539|gb|ADEF01000028.1| GENE 158 212766 - 212963 220 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880587|ref|ZP_06289294.1| ## NR: gi|282880587|ref|ZP_06289294.1| prevent-host-death family protein [Prevotella timonensis CRIS 5C-B1] # 1 65 1 65 65 112 100.0 6e-24 MKIIHIEQLIEDPIHLLDSVVDNGDSLLIHRPKDKSVVILSMEEYNQLKACEYRAKKNEP PKANP >gi|281305539|gb|ADEF01000028.1| GENE 159 213121 - 213372 237 83 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880588|ref|ZP_06289295.1| ## NR: gi|282880588|ref|ZP_06289295.1| hypothetical protein HMPREF9019_1510 [Prevotella timonensis CRIS 5C-B1] # 1 83 12 94 94 165 100.0 8e-40 MEKSFSDRQREQSIYRVTIAGSIINAALLAFKFTVGILGALAAMIADTVHSEPLKVNGVY VEPFSGECQTSYRFDLQDDRRKF >gi|281305539|gb|ADEF01000028.1| GENE 160 213661 - 213831 109 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNVYCYPQLIVNHGHEFASTTPWETRRTDDLFLFIQNHHHEKLSTFTPRRPFGGHE >gi|281305539|gb|ADEF01000028.1| GENE 161 213779 - 214316 344 179 aa, chain + ## HITS:1 COG:no KEGG:EF2248 NR:ns ## KEGG: EF2248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 59 179 145 263 1004 95 45.0 6e-19 MRNYLLSLLVALLAVTSSLPAVAQEAYAVLTSDKTLTFYYDNQRATRQNYQHIYDMPKPG VFPAWAGNYGIPQKNIKHVVFDASFSEYRPTSTCGWFNSCIILQHIEGIRNLNTEKVTDM SWMFFGCEALTSLDVSNFNTQNVTNMSWMFHSCKALTSLDVSNFNTQHVTNMSAMFKAC Prediction of potential genes in microbial genomes Time: Sat May 28 06:58:34 2011 Seq name: gi|281305485|gb|ADEF01000029.1| Prevotella timonensis CRIS 5C-B1 contig00013, whole genome shotgun sequence Length of sequence - 67836 bp Number of predicted genes - 55, with homology - 50 Number of transcription units - 30, operones - 6 average op.length - 5.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 178 95 ## + Term 340 - 378 -0.5 + TRNA 780 - 855 85.9 # Pro CGG 0 0 - Term 856 - 894 6.2 2 2 Tu 1 . - CDS 925 - 2592 1715 ## COG2759 Formyltetrahydrofolate synthetase - Prom 2625 - 2684 3.5 3 3 Tu 1 . - CDS 2750 - 3955 1088 ## COG0523 Putative GTPases (G3E family) - Prom 4059 - 4118 4.5 + Prom 3828 - 3887 5.0 4 4 Tu 1 . + CDS 4076 - 4174 61 ## - Term 3985 - 4030 0.0 5 5 Tu 1 . - CDS 4122 - 5042 925 ## COG1555 DNA uptake protein and related DNA-binding proteins 6 6 Op 1 . - CDS 5545 - 6045 457 ## COG2954 Uncharacterized protein conserved in bacteria 7 6 Op 2 . - CDS 6048 - 6185 125 ## 8 6 Op 3 . - CDS 6209 - 7333 1225 ## COG1186 Protein chain release factor B 9 6 Op 4 . - CDS 7330 - 9138 1287 ## COG1022 Long-chain acyl-CoA synthetases (AMP-forming) 10 6 Op 5 . - CDS 9209 - 10543 1363 ## COG3004 Na+/H+ antiporter - Prom 10603 - 10662 6.7 - Term 11451 - 11503 17.6 11 7 Op 1 . - CDS 11558 - 12010 290 ## PROTEIN SUPPORTED gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 12 7 Op 2 35/0.000 - CDS 12075 - 13406 1706 ## COG0206 Cell division GTPase 13 7 Op 3 . - CDS 13455 - 14894 1181 ## COG0849 Actin-like ATPase involved in cell division 14 7 Op 4 . - CDS 14963 - 15757 431 ## PRU_2334 putative cell division protein 15 7 Op 5 26/0.000 - CDS 15754 - 17127 852 ## COG0773 UDP-N-acetylmuramate-alanine ligase 16 7 Op 6 31/0.000 - CDS 17157 - 18275 921 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase - Prom 18299 - 18358 3.7 17 7 Op 7 25/0.000 - CDS 18362 - 19645 977 ## COG0772 Bacterial cell division membrane protein 18 7 Op 8 28/0.000 - CDS 19645 - 20976 1158 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase - Prom 20996 - 21055 3.2 19 7 Op 9 4/0.000 - CDS 21127 - 22395 803 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 20 7 Op 10 26/0.000 - CDS 22427 - 23878 1215 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 21 7 Op 11 . - CDS 23898 - 26027 1769 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 22 7 Op 12 . - CDS 26051 - 26539 381 ## PRU_2326 hypothetical protein 23 7 Op 13 29/0.000 - CDS 26536 - 27471 675 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 24 7 Op 14 . - CDS 27471 - 27947 407 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 27978 - 28037 3.1 25 8 Tu 1 . - CDS 28039 - 28317 83 ## - Prom 28390 - 28449 2.5 26 9 Tu 1 . + CDS 28292 - 29119 584 ## COG3176 Putative hemolysin + Prom 29153 - 29212 4.3 27 10 Tu 1 . + CDS 29236 - 30225 821 ## COG3176 Putative hemolysin + Prom 30307 - 30366 6.7 28 11 Tu 1 . + CDS 30397 - 32754 2461 ## COG3537 Putative alpha-1,2-mannosidase + Term 32813 - 32871 8.1 + Prom 33447 - 33506 5.4 29 12 Tu 1 . + CDS 33626 - 36529 1943 ## BT_0065 alpha-galactosidase precursor + Term 36554 - 36601 11.1 - Term 36542 - 36589 13.6 30 13 Tu 1 . - CDS 36693 - 38030 753 ## COG0232 dGTP triphosphohydrolase - Prom 38082 - 38141 4.4 + Prom 38007 - 38066 6.4 31 14 Op 1 . + CDS 38194 - 38631 517 ## COG0756 dUTPase 32 14 Op 2 . + CDS 38670 - 40445 1605 ## COG0457 FOG: TPR repeat 33 14 Op 3 . + CDS 40442 - 41341 554 ## PRU_2918 putative lipoprotein 34 14 Op 4 . + CDS 41338 - 42969 1182 ## PRU_2919 putative TolA protein 35 15 Tu 1 . - CDS 43025 - 43750 533 ## PRU_2337 putative DNA repair protein RecO - Prom 43886 - 43945 77.6 + TRNA 43869 - 43943 41.1 # Pseudo TTC 0 0 + Prom 43870 - 43929 78.7 36 16 Tu 1 . + CDS 43970 - 44224 303 ## PROTEIN SUPPORTED gi|150003956|ref|YP_001298700.1| 30S ribosomal protein S20 + Term 44248 - 44295 3.5 - Term 44236 - 44283 3.5 37 17 Tu 1 . - CDS 44284 - 44976 519 ## gi|282880625|ref|ZP_06289331.1| hypothetical protein HMPREF9019_0488 - Prom 45149 - 45208 9.0 + Prom 44952 - 45011 3.8 38 18 Tu 1 . + CDS 45173 - 47146 1760 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit + Term 47168 - 47208 10.1 - Term 47106 - 47151 4.0 39 19 Tu 1 . - CDS 47239 - 48279 581 ## BDI_2912 aminopeptidase C - Prom 48300 - 48359 9.3 40 20 Op 1 . + CDS 48849 - 50105 1186 ## COG0826 Collagenase and related proteases 41 20 Op 2 . + CDS 50131 - 50553 485 ## COG2166 SufE protein probably involved in Fe-S center assembly 42 20 Op 3 . + CDS 50569 - 51099 289 ## COG0566 rRNA methylases + Term 51133 - 51186 19.0 43 21 Tu 1 . - CDS 51193 - 54363 2554 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 54456 - 54515 5.6 44 22 Tu 1 . + CDS 54548 - 55543 744 ## COG3150 Predicted esterase - Term 55559 - 55594 -0.7 45 23 Tu 1 . - CDS 55609 - 56076 447 ## COG0590 Cytosine/adenosine deaminases - Prom 56109 - 56168 3.6 + Prom 56056 - 56115 3.7 46 24 Tu 1 . + CDS 56248 - 59679 1954 ## COG1112 Superfamily I DNA and RNA helicases and helicase subunits + Prom 59734 - 59793 6.1 47 25 Tu 1 . + CDS 59837 - 60409 651 ## PRU_1474 hypothetical protein + Term 60445 - 60474 1.4 + Prom 61133 - 61192 11.1 48 26 Op 1 . + CDS 61355 - 61822 639 ## COG0782 Transcription elongation factor 49 26 Op 2 . + CDS 61835 - 62233 403 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 50 26 Op 3 . + CDS 62293 - 62832 462 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 62872 - 62925 15.5 - Term 62773 - 62829 12.8 51 27 Tu 1 . - CDS 62917 - 63384 368 ## PG1471 hypothetical protein - Prom 63406 - 63465 3.3 52 28 Tu 1 . + CDS 63364 - 63627 141 ## 53 29 Tu 1 . - CDS 63517 - 65712 1133 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 - Prom 65830 - 65889 5.3 + Prom 65680 - 65739 10.6 54 30 Op 1 . + CDS 65850 - 66845 667 ## COG0451 Nucleoside-diphosphate-sugar epimerases 55 30 Op 2 . + CDS 66882 - 67836 607 ## PRU_2755 hypothetical protein Predicted protein(s) >gi|281305485|gb|ADEF01000029.1| GENE 1 2 - 178 95 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no WRAVSATGVNEASFPNHSFCSFRAQDRGATVPRVLPWAKFLLGFQPVFAVCKPYILKL >gi|281305485|gb|ADEF01000029.1| GENE 2 925 - 2592 1715 555 aa, chain - ## HITS:1 COG:SPy2085 KEGG:ns NR:ns ## COG: SPy2085 COG2759 # Protein_GI_number: 15675843 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Streptococcus pyogenes M1 GAS # 3 554 4 556 557 557 52.0 1e-158 MKTDSEIAHEAKLNLIGDIARQINIPEDDLEPYGKYIAKVPYTLIDDEKVKKSNLILVTS ITPTKTGNGKTTVSVGLALGMNRIGKKAIVALREPSLGPCFGMKGGAAGGGYAQVLPMEK INLHFTGDFHAITSANNMISALLDNYCYQHRDEGFALKEVLWRRVLDVNDRNLRNIITGL GGRTDGIVSESGFDITPASEIMAILCLAQDEDDLLRRIENILLGFTIEGKSFTVKDLGVA GAITAILHDAIHPNLVQTTENTPAFIHGGPFANIAHGCNSVMATKMAMTFGEYAITEGGF GADLGAEKFFDIKCRKAGISPKLTVLVATAQALKMHGGIDLSSIKEPHIEGIKQGFANMD KHIHNLQSFGQTVVVCINRFPTDTNEELQLIQEYCQKLGVGCAINTAFVDGGKGAEALAR LVVDTIAQKPSTPLKMLYDDNDSVEDKVRKIALQLYGARDVILKPAAKKMLSRIEELGCA HFPVCIAKTQYSFSEDAKAYGMPTNFDITIRDFFINKGAEMIVAIAGNIMRMPGLPKVPS AENISVVNGEIQGLS >gi|281305485|gb|ADEF01000029.1| GENE 3 2750 - 3955 1088 401 aa, chain - ## HITS:1 COG:BH1790 KEGG:ns NR:ns ## COG: BH1790 COG0523 # Protein_GI_number: 15614353 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Bacillus halodurans # 1 399 1 372 395 296 40.0 5e-80 MKIQETPVLLLTGYLGSGKTTLVNRILSNKKGIKFAVIVNDIGEVNIDADLIEQGGVVGQ KDDSLVALQNGCICCTLKVDLIEQLNDIVRMNKFDYIVIEASGICEPAPIAQTICAYPEL YPHLAKNGIAKLDAIVTVVDALRLRDEFNVGDDLLKQNIDDDDLERLVIEQIEFCNFIVL NKAAEVSAEDLEKVKKIIRAIQPKAQILTCNYGDIDLDLILHTDMFDFEKVATSASWIAE IENHGDTEPSHTAEEHHHHHHHHHDEHEGIENEESGEALEYHIETFVYYRRPPFNLGLFD DFVARRWPKNIIRCKGICYFHDEKDKCYVFEQAGKQVQIRDAGQWYATMPAEQLQKYMAQ NPGLQRDWDEQYGDRMQKLVFIGQNLDKEEIIKELDQCLDE >gi|281305485|gb|ADEF01000029.1| GENE 4 4076 - 4174 61 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPTRVPKGMKNDGTAIPRKKHKAKVVLSRQV >gi|281305485|gb|ADEF01000029.1| GENE 5 4122 - 5042 925 306 aa, chain - ## HITS:1 COG:TM1052 KEGG:ns NR:ns ## COG: TM1052 COG1555 # Protein_GI_number: 15643810 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Thermotoga maritima # 177 304 47 181 181 78 34.0 2e-14 MSFKDFFYFNKSDRKALLFLLLLGIGATILFYVFSDPKNIDANTPIHDTVFAYRDVRVDR YGQQPAVYYRVEGRQIELFPFDPNTADSTALLRLGLQPWQVRNIYKYRAAGGVYRQRRDF ARLYGLTQKQYRTLEPYIHIGSDYHPAAEAVASVNKTASYGRDTLRFPVKIKSSEHISVN TADTNLLKKVPGIGSYYARQIIRYRTRLGGFYSTQQLLEIEDFPEESLPYFRISKHDTEH IQRLFINRLSIHQLKRHPYIGYYRARAIVDYRRLKGPIHRWEDLSMLPDFTPDVIARLSP YVSFSE >gi|281305485|gb|ADEF01000029.1| GENE 6 5545 - 6045 457 166 aa, chain - ## HITS:1 COG:XF2357 KEGG:ns NR:ns ## COG: XF2357 COG2954 # Protein_GI_number: 15838948 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Xylella fastidiosa 9a5c # 3 157 2 161 165 135 45.0 4e-32 MSGLEIERKFLVKKGDAYKQFAFSSSHIQQGYLPCIGATVRIRTRDDKAYLTIKGKATNG GLSRYEFETEITMEEASQLFKLCQGGVIDKRRFLVKSGAHTFEVDEFYGDNEGLVLAEVE LAHEQEPYVKPDFIGMEVTGDARFYNKYMLSHPYSDWKNTLPEEYQ >gi|281305485|gb|ADEF01000029.1| GENE 7 6048 - 6185 125 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSGKNKFNRTKRDARQEKQAKNVIKWLSIALLVCAIIWMIVALNV >gi|281305485|gb|ADEF01000029.1| GENE 8 6209 - 7333 1225 374 aa, chain - ## HITS:1 COG:NMA0224 KEGG:ns NR:ns ## COG: NMA0224 COG1186 # Protein_GI_number: 15793246 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Neisseria meningitidis Z2491 # 4 366 10 365 367 264 42.0 3e-70 MITSDQLKDVIERTQALHHYLNIDQKKIEFEEEQLRTQAPDFWEDPQRAQEQMIKVKGIE KWLKGYEQVRQMADELQLAYEFYRDDMVTEEELDHDYAKAIAAIEDLELKNMLRQKEDPM DCVMKINSGAGGTESQDWAQMLMRMYMRWAEAHDYKCTVSDIQDGEEAGIKSVTMKIEGN EYAYGFLKSENGVHRLVRVSPFNAQGKRMTSFASVFVSPLVDDTIEVFVDPACVSWDTFR SSGAGGQNVNKVESGVRLRYQYHDPDTGEEEEILIENTETRDQPKNRAKAMQLLKSQLYD RAMKKRLEAQAKIEAGKKKIEWGSQIRSYVFDDRRVKDHRTNFQTTDVDGVMDGKIDDFI KAYLMEFPVVESED >gi|281305485|gb|ADEF01000029.1| GENE 9 7330 - 9138 1287 602 aa, chain - ## HITS:1 COG:HI0002 KEGG:ns NR:ns ## COG: HI0002 COG1022 # Protein_GI_number: 16271978 # Func_class: I Lipid transport and metabolism # Function: Long-chain acyl-CoA synthetases (AMP-forming) # Organism: Haemophilus influenzae # 1 600 9 602 607 451 39.0 1e-126 MQTRCHLSVLIHEQAKKYGARDALTFRNFGSKSWKTVSWNQFSLRVMQVSNALINSGVKS QETIGVFAQNCIQYLYTDFGAYGIRAVTIPFYATCSEQQIQYMINDAQIKILFVGEQEQY DKAHRVSALCPTLNRIIVFDRNVCVSKHDPNTIYFDDFIASVEHLPQQAAVEQRWGEAND EDICNILYTSGTTGESKGVILTYGQYSAAMIANDQCVPLGEDDIVMDFLPITHIFERGWV YLCLTEGAKIIINTYPKEIQQSMREMHPTCMCAVPRFWEKVYVAVKEKIDEANTIQRKIF QRALNVGKKYNIDYLSKGKRPPLALKMEYEMYNKTVMSLVRKQIGLENAHFFPTAGAYVS PEVEEFTHSVGICMVVGYGLTESLATVSCDRIGKTYTVGSVGRPIDSIEVKIGENNEIML KGPTITRGYYKREHINEQAFDEDGFFHTGDAGYLKDGELYLTERIKDLFKTSNGKYVAPQ MIEAMMLVDKYIDQAVIIADQRKFVSALIVPEFRLLEEYAHDHGIAFNSREEICEDARVV KMMLDRILTLQQSLAHYEQVKRITLVPHHFTMERGELTNTLKIKRPAINKNYKDIINKMY EE >gi|281305485|gb|ADEF01000029.1| GENE 10 9209 - 10543 1363 444 aa, chain - ## HITS:1 COG:jhp1447 KEGG:ns NR:ns ## COG: jhp1447 COG3004 # Protein_GI_number: 15612512 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter # Organism: Helicobacter pylori J99 # 8 437 4 427 438 305 44.0 1e-82 MSDKQGSKNIYNKVVKGVQRFMAQEKSGGIVLAVAVLLAILLANSALSDRYYDFFQQKLG FIWNGEPYLYFSLHHWINDGLMSIFFFHIGLELKRELISGELSNPRNIILPIAAAIGGMA IPALVYLFFNAGTPEYAGWGVPMATDIAFALGVLFLLGKHVPTSIKVFLTTLAIVDDLGA VIVIALFYTSEISVANLALGLGFLLLMFIGNKLGVKNVFFYAFLGIVGVWIAFLLSGIHA TIAAVLAALTIPADSTIDESTYLYRMRKLGLRFMTANTNEYRTLENEQVKILATIREDAK IAIPPLQLIEHHLNPFVTFLVLPIFAISNAGISLVGIDWSAIFATNVAIGIALGLLLGKP LGVVGITWLLDKLNIVKRPHDMSMRHLFALGFLASIGFTMSMFISTLAFRTDLLLTQAKI GIFAASIVGGCLGYLLMKPSRQGK >gi|281305485|gb|ADEF01000029.1| GENE 11 11558 - 12010 290 150 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42519249|ref|NP_965179.1| 30S ribosomal protein S21 [Lactobacillus johnsonii NCC 533] # 1 148 1 146 147 116 41 4e-25 MALFEQISEDIKTAMKARDKVALDTLRNIKKVFLEAKTAPGANDTLNDDAALKIIQKLAK QGKEAAQTYIDAGRQDLADVELQQVQVIERYLPQQLSMEEIASAVKEIIEQVGASSMKEM GQVMGIATKKLAGKADGRAISGVVKKLLAQ >gi|281305485|gb|ADEF01000029.1| GENE 12 12075 - 13406 1706 443 aa, chain - ## HITS:1 COG:BB0299 KEGG:ns NR:ns ## COG: BB0299 COG0206 # Protein_GI_number: 15594644 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Borrelia burgdorferi # 21 328 26 331 404 211 45.0 3e-54 MPDRKNIPDVLDFGEPDKANSIIKVIGVGGGGGNAVNHMYREGIHDVTFVLCNTDNQALN DSPVPYHLQLGKEGLGAGNKPEKARLAAEESLEDIKNMLNDGTRMTFITAGMGGGTGTGA APVIARISKELGILTVGIVTIPFRFEGDKKINQALDGVEEMAKHVDALLVINNERLREIY PDLTVLDAFGKADDTLSIAAKSIAEIITNHGLINLDFNDVKTVLKDGGVAIMSTGFGEGE GRVKAAIEDALNSPLLNDNDIFNSKKILLSINFCNEKNDNSGLMMEEMNDVNDFMGRFDS DFEIKWGLAIDPDLGKKVKVTILATGFGINDVEGMNSHIGKRHSQEEAMRIAEEEERKAQ LLIRKDQYYKDGKNSKYKRHPHIYLFSNEDLDNEDVILAVESYPTYKRTRQMLDDIRKQA AGETEESDHKENNDPIQGVISFG >gi|281305485|gb|ADEF01000029.1| GENE 13 13455 - 14894 1181 479 aa, chain - ## HITS:1 COG:RSc2840 KEGG:ns NR:ns ## COG: RSc2840 COG0849 # Protein_GI_number: 17547559 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Ralstonia solanacearum # 3 328 6 336 410 166 31.0 1e-40 MTKEFIVAIELGSSKITGIAGKKNPDGSISILAVVKEDSTSCIRKGVVFNIDKTVLCLTN IVKKLETSLKTNIARVYVGVGGQSIRSVKNIIMKTLPAETIVSQDMINELMDANRSMSYA DQEILDAVTQEYKVDSLYQLDPVGIPCLRLEGNFLNILWRKTFYKNLNQCINKAGMEIAE LYLAPLALADAVLTETEKRSGCILVDLGADTTTVLVYYKNILRHLAVIPLGGENITKDIT SLLMEESQAEDMKLKYASAYTDNSDIDENKKYPIDSDRKVESRKFIEIVESRLQEIIENV FYQVPNEYADKLIGGIILTGGGANMPNIEKAFTDQAPTEKIRIAKFVNLKINSNLPEITA HDATMNTILGLLAKGDINCAGEEINTDLFQATDAKHTATTPTQTKEPRSFTETSGTGIVQ TEEEKERLRKQKEAQEEAERLAKEEEERRIAEEKRQNSPMNKLWKGIKNFARKITEEEE >gi|281305485|gb|ADEF01000029.1| GENE 14 14963 - 15757 431 264 aa, chain - ## HITS:1 COG:no KEGG:PRU_2334 NR:ns ## KEGG: PRU_2334 # Name: not_defined # Def: putative cell division protein # Organism: P.ruminicola # Pathway: not_defined # 4 259 5 247 251 268 50.0 2e-70 MRRWKKILTIVLDVVLGIYLVFAFTAFNKPDETANVCTKVTINIADETANGFINATKIQD RLEKHRLYPLEKPMKYVDARKIEDMLKTSPFVKNAECFKTQNGHVNISITQRMPVVRIKS INNDDYYLDDQDAIMPNSNYTSDLIIATGYINRWFATHYVSALSKTIMQDEFWKNQIVQI NILPDRGVELVPRVGDHIVYLGYLPTSSNQQKRLALIQDFTKQKLTRLEKFYKYGLSQAG WNKYSYINLEFDNQIICKKREAQP >gi|281305485|gb|ADEF01000029.1| GENE 15 15754 - 17127 852 457 aa, chain - ## HITS:1 COG:CAC3225 KEGG:ns NR:ns ## COG: CAC3225 COG0773 # Protein_GI_number: 15896472 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Clostridium acetobutylicum # 7 443 11 448 458 235 33.0 2e-61 MDIKEIKSVYFLGAGGIGMSAIARYFLHKGLVVAGYDKTPSALTHRLEQEGMLLHYDENI DEIPHACRNPQVCMVVYTPAIPESHMELQYFKSNGFEVLKRAQVLGLLTRTHRGLCFAGT HGKTTTSTMCAHIMHQSHVDCNAFLGGISKNYGSNYILSDTSDYIVIEADEFDRSFHWLR PWMSVITSTDPDHLDIYGTKEAYLESFRHYTTLIKPGGALIIHEGLEMQEDVNNEVRVFR YSLNGGDFHAENIKIENGTITFDFISPIENVTQVELGHPIPINVENAVAAMAMAQLNGCT AEELRYGMSTYKGVDRRFDFKVNNERHVFLSDYAHHPKEIYQSAKSLRELYHDRHVTAIF QPHLYTRTRDFYKEFAEALSQLDEVILCDIYPAREAPIPGVTSALIYNELTCKEKSMIHK EDVIDLVKKRDFDVLVVLGAGDLDNYVPQMTKIIENK >gi|281305485|gb|ADEF01000029.1| GENE 16 17157 - 18275 921 372 aa, chain - ## HITS:1 COG:BH2565 KEGG:ns NR:ns ## COG: BH2565 COG0707 # Protein_GI_number: 15615128 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Bacillus halodurans # 5 365 1 363 363 258 36.0 2e-68 MNSDLRIIISGGGTGGHIFPAISIANAIKKERPDAKILFVGAQGRMEMERVPKAGYEIKG LPIAGFDRHHLLKNLSVLIKIWKSQRLAKAIIKDFKPMVAVGVGGYASGPTLNVCSKLHI PCLIQEQNSYAGVTNKLLGKKADKICVAYEGMERFFPAEKIIMTGNPVRQNVLQTALSKE AARETFGLDPKRKTILLVGGSLGARTLNESIQSHLDMIRTSDVQFIWQTGKYYYKDICNA LKAQAPLPNLYVTDFISDMGVAYQASDLVISRAGASSISEFCLIGKPVILVPSPNVAEDH QTQNAMALVNKNAAIYVKDVEAKDILLEQAIKTVQDDAKLASLSENILKLALPNSAEIIA QEVLKLAARQQH >gi|281305485|gb|ADEF01000029.1| GENE 17 18362 - 19645 977 427 aa, chain - ## HITS:1 COG:SP1067 KEGG:ns NR:ns ## COG: SP1067 COG0772 # Protein_GI_number: 15900936 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Streptococcus pneumoniae TIGR4 # 15 421 13 405 409 118 24.0 2e-26 MDKTLGNIFKGDKVIWMVFFFLCIISIVEVYSASAGLTYKGGHYWAPIVKHTGILLVGVF AMVVTLNIKCKYFKIVTPFLLVISIIALVTVLIAGQSTNGAQRWISIIGIQFQPSEIAKG TMVLATAQILSAMQTEQGADKNAFKYILIVSGCIVPFIMVENLSTAMLLCLVIFLMMMIG RVPGKILGKVLGIVTLLIVTVFALVMLVGQDREKINAQGQQVVQVSNTAEKEETTMFTKV FHRFDTWKARIDRFIDGKEIAPEDFDLDKDGQIGHANIAIVSSNVIGKGPGNSVERDFLS QAFSDFIYAIIIEEMGIIGGVFVAMLYIILLFRTGQIANRCENNFPAFLAMGLALLLVTQ ALFNMCVAVGLAPVTGQPLPLVSKGGTSTIINCVYIGAILSVSRSAKKKQVTDEDKDMEM STAVASA >gi|281305485|gb|ADEF01000029.1| GENE 18 19645 - 20976 1158 443 aa, chain - ## HITS:1 COG:BS_murD KEGG:ns NR:ns ## COG: BS_murD COG0771 # Protein_GI_number: 16078584 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Bacillus subtilis # 2 443 10 450 451 248 37.0 2e-65 MKRIVILGAAESGVGAAILAQKEGFDVFVSDMGEIKDKYKKMLDAHHIRWEEKQHTPDLI LNADEVIKSPGIPKEAPMIQKLMKRGTNIISEIEFAGRYTHSKMICITGSNGKTTTTSLI YHIFKAAGYDAGLAGNIGRSLALQVAEDPHEYYIIELSSFQLDNMYKFKADIAILLNITP DHLDRYDNCMQNYVDAKMRIIQNQTEKDSFIYWNDDPIIKRELQKYDIKAVQCPFSELKE KGSIGYIEEGQYTIEKPTPFNMEQEALSLTGKHNVYNSLAAGIATDIAGIRNDVIRKSLS DFSGVEHRLEKVCKVGGVEYINDSKATNVDACWYALESMNTPTVLILGGKDKGNDYQLIK ELVKKKCVGLVYLGADNTKLHNNFDSLGIPVRDTHSMKECVEACYEMARPGDTVLLSPCC ASFDLFKNMEDRGNQFKTLVRNL >gi|281305485|gb|ADEF01000029.1| GENE 19 21127 - 22395 803 422 aa, chain - ## HITS:1 COG:HI1135 KEGG:ns NR:ns ## COG: HI1135 COG0472 # Protein_GI_number: 16273061 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Haemophilus influenzae # 1 422 1 360 360 210 34.0 5e-54 MLYYLFRFLEQYGISGAHLWGYISFRSLLALILSLVISAWFGEKFIKYLRQKQITETQRD ASIDPFGVNKIGVPSMGGVIIIAAILIPVLLLGRLRNIYLILMIITTVWLGFLGGMDDFI KIFRKNKEGLKGKYKIIGQVGIGLIVGLVLWSSPDVKINENLAIEQQGHEMVIKHRTDAR KSLKTTIPFVKGHNLDYSGVMSWCGKYKTAAGWILFVIMTIIVVTAVSNGANLNDGMDGM CAGNSAIIGVTLGILAYVSSHIEFAAYLNIMYIPGSQELVVFMCAFVGALIGFLWYNSFP AQVFMGDTGSLTIGGIIAVSAIIIHKELLLPILCGIFFVESLSVILQVYYYKSGKRKGIK RRIFKRTPIHDNFRTQDSQLDPACNYLIKKPHSAIHESKITIRFWIITIILAAMTIITLK IR >gi|281305485|gb|ADEF01000029.1| GENE 20 22427 - 23878 1215 483 aa, chain - ## HITS:1 COG:CAC2129 KEGG:ns NR:ns ## COG: CAC2129 COG0769 # Protein_GI_number: 15895398 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Clostridium acetobutylicum # 1 482 1 480 482 345 40.0 9e-95 MICNELIKDIKCTDILGDTNVSISGVNIDSRKIKPGHLFVAIKGTQVDGHEYIDKAILLG AVAVLCEKAPKEPLSDITYIVVTSTEDAVGKVATRFYGDPSKHLKLIGVTGTNGKTTIAT LLYNMFRKLGHRCGLLSTVCNYIEDEQIPADHTTPDPIELNELLAKMVEQHCEYVFMECS SHAIAQKRIGGLNFTGGIFTNLTRDHLDYHKTFENYRNAKKSFFDHLPKSAFAITNADDK NGMVMVQNTKATVKTYSVRTAADFKARIIECHFQGMYLEIDGQEVGVQFIGKFNVSNLLA VYATARMLGKQREEILIAMSTLHSVNGRMDTLHSPQGFTAVVDYAHTPDALKNVLLAIHE VDGKGHVITVCGAGGNRDKGKRPLMAKQAVQLSDKVIITSDNPRFEEPQDIINDMLAGLD AQDMKKVLSIVDRREAIRTACMLADKNDVVLVAGKGHETYQEVKGVKHHFDDKEVLAEIF KQS >gi|281305485|gb|ADEF01000029.1| GENE 21 23898 - 26027 1769 709 aa, chain - ## HITS:1 COG:CAC2130 KEGG:ns NR:ns ## COG: CAC2130 COG0768 # Protein_GI_number: 15895399 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Clostridium acetobutylicum # 3 708 15 723 729 172 23.0 2e-42 MPRYSAIAIMLTLVAVAVVGKTLYIMTAKRDYWTKVADRVKRDSVDIKPMRGNILSCNGE LMASSLPEFKVYMDFKSLRTSKNDSLWEAKLDSICEGLHQIFPEKPASAFRKELETGRQQ QSRHWPIWKKRIDYNSFTEIKALPIFNLSKYMSGFHYEEFNARQRPYGSLAGRTVGAMYG AKDTARFGLELSYDSILRGKNGIVHRRKVLNKFLDIMDTPPIDGADIVTTIDVGMQDLAE RAVIDELKQINGNVGVALVMEVKTGDIKAIVNMEKCFDGEYREVKNHAVSDLLEPGSVFK VASIMVALDDGVVDTTARIETAGGVWPMYGRQMKDHNWRRGGYGTLTLPQTLLYSSNIGV SRIIDDHYRDNPEKFVQGLYRTGLADALNIPLVGSSSAVIRMPKKNERGQWINWSKTALP WMSIGYETQVPPISTLTFYNAIANNGKMMQPRFVKQVVKDGEVLIDFPPKVLRSQICKPK TLGEIQTILEHVVSQGLGRKAGSPSFKVSGKTGTAQISQGSGGYKVGRTNYLLSFAGYFP SDNPRYSCIVCIQKSGLPASGGGMSGVVFHHIAEGVMAQDLKLDVKDAKDSTSILVPKVK NGNVLAANYVLTHLGINTNRNWSGTFANGNPIWGTAEIQNNSSVELKKAKMYTHQYIPDV LGMGARDAVYILENRGVKVRLNGRGKVVQQSLPPGHRIQKKQVCLLTLS >gi|281305485|gb|ADEF01000029.1| GENE 22 26051 - 26539 381 162 aa, chain - ## HITS:1 COG:no KEGG:PRU_2326 NR:ns ## KEGG: PRU_2326 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 34 160 18 144 145 135 57.0 5e-31 MTKDDKDIDVQPIPTDAYKDADAALDSSANKNNEEAPTLKEVIKEQAREEEAPLSRNFTL RKILGGDILTTSTVRKQIWIFLLITFFTIIYISNRYSVQQNLIEIDKLQKELKDARYKAL SSSSQLTEKSRESNVLDMLKNNQDSVLKIANQPPYIIQVPAK >gi|281305485|gb|ADEF01000029.1| GENE 23 26536 - 27471 675 311 aa, chain - ## HITS:1 COG:CAC2132 KEGG:ns NR:ns ## COG: CAC2132 COG0275 # Protein_GI_number: 15895401 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Clostridium acetobutylicum # 9 311 5 310 312 247 46.0 2e-65 MIKTAGSYHVPVLLEQSIEGLNIHPEGIYVDATFGGGGHSMEILSHLNEKGHLFSFDQDL DAEKNIQQEGHEVLLQDNFTFIRSNFRYLKNWMRYYKIEKIDGILADLGVSSHHFDDENR GFSFRFDAPLDMRMNTKASLTAADVINTYNEEQLADIFYLYGELKNARRIASLLVKARSQ KNITSTHDLIQAVEAVFGKVREKKDLAKLFQALRIEVNHEMEALKELLNSAQELLTTGGR LVVITYHSLEDRMVKNIMKTGNVQGKVQQDFFGRIETTFKLLNNKVITPTPQEQQENPRS RSAKLRIAEKI >gi|281305485|gb|ADEF01000029.1| GENE 24 27471 - 27947 407 158 aa, chain - ## HITS:1 COG:PA4421 KEGG:ns NR:ns ## COG: PA4421 COG2001 # Protein_GI_number: 15599617 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 3 122 2 120 151 65 31.0 5e-11 MRFLGNIEAKVDAKGRVFLPATFRKVLQASGEEVLVLRKDVFQSCLTLYPESVWNEQLDN LRTKLSRWNAAEQQIFRQFVSDAELLTLDGNGRFLIPKRYQMLAHIEQSVRFIGMDDTIE VWCNERVKEPFMDSQEFGEALQHLMNSATDKTTINSSK >gi|281305485|gb|ADEF01000029.1| GENE 25 28039 - 28317 83 92 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVFSISSCIETIKLIDCKCNISFCNIPLLYAKLFKNYLNCYFIATRRIILQAQKWVHDKS LSLKKYFFSRVIISFEEVDRTGVESLNIANFY >gi|281305485|gb|ADEF01000029.1| GENE 26 28292 - 29119 584 275 aa, chain + ## HITS:1 COG:VCA0646 KEGG:ns NR:ns ## COG: VCA0646 COG3176 # Protein_GI_number: 15601404 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Vibrio cholerae # 55 252 68 264 605 75 29.0 9e-14 MHEEIEKTIDIDEILKNKLGDKVNYLPHFVASWLKKITHQDEINVFLWNHRHLTGTEWLE ACIDFLDVTLEIQGEENLPDPHNGKLYTFVSNHPLGGADGVAIGAIIGRHYGNQFRYLLN DLLLNLPALKPVSIGINKTGKQGRNFPAMVEEGFQSDNHIIMFPAGLCSRKINGQIRDIP WKKTFVSKSVEHHRDVVPIHFDGRNSDRFYLIAHLCKVFRLKVNLAMLFLVDEMFKNKHQ TFHVKIGKPIPWQAFDKSKTPIEWAQYVQNIVYQL >gi|281305485|gb|ADEF01000029.1| GENE 27 29236 - 30225 821 329 aa, chain + ## HITS:1 COG:VCA0646 KEGG:ns NR:ns ## COG: VCA0646 COG3176 # Protein_GI_number: 15601404 # Func_class: R General function prediction only # Function: Putative hemolysin # Organism: Vibrio cholerae # 5 295 304 583 605 127 29.0 2e-29 MQQEIIDPIDKELLKAELTPDKRLRMTNKSHNKIFVITAHNAPNVMKEIGRLREIAFRTA GGGTGKSMDIDEYDTCENCYKQLIVWNPDADEIIGGYRYLCGEDWELDEDGQPKLATSHL FHFSEKFLKDYMPYTVELGRSFVSLEYQNVRRNTKSIFALDNLWDGLGALTVLNPKLKYF FGKMTMYPSYIRKGRDMILYFLEKHFGDHEHLIVPMRPLKIEANPQELDALFCGNDFKAN YRILNREIRQLGYNIPPLVNAYMGLSPTMKLFGTAINDGFGDVEETGILIAVDEILEEKR VRHIESFIKEHRESLEITSGANKVIYKDK >gi|281305485|gb|ADEF01000029.1| GENE 28 30397 - 32754 2461 785 aa, chain + ## HITS:1 COG:XF0842 KEGG:ns NR:ns ## COG: XF0842 COG3537 # Protein_GI_number: 15837444 # Func_class: G Carbohydrate transport and metabolism # Function: Putative alpha-1,2-mannosidase # Organism: Xylella fastidiosa 9a5c # 25 781 40 765 790 280 28.0 1e-74 MRKISMMLLAFVGMLGMMSCTNTGSTSKEDFTTYVEPRIGTAHCRYFHMAPGALPFGMAK PGPSTNGHYGNKSGWEATGYDYRDKSIEGFPCLHEFQIGGITLMPTVGQLFTVPGDTAMT GERKGYRSTFSHDDEVATAGYYSVLLKDYNVTAEVTATTRVAFQRYTFPESKESRILFDI GNRQGESGAVKDAKVEIKDNGTVVEGWVITLPEYVKKYQPGAEVPLYFHAVIDKKPTAVG TFNGEKVKKDSLTANGLGAGAYLTFETSAQEKITVKVGVSYTSVENARLNLETEAKDMAF DEAKKQSHDTWNEHLSRIAVETENKDDKVKFYTGLYHAILGRGIASDVNGAYPKHDGTIG QIEMKDGKPAFNLYNTDAMWGAQWNLNQVWIMAYPEHMSDFISSHLQVFKDSGWLGDGLA NSRYVSGVGTNQLSLMIAAAYACGIRDFDVNLAYEACRKNELDGENRPFGAGKTDTKLFV EHGYVPHQDTGEGADEMFMFSASHTLEYAFSAWATAQMAKALGKTDDYNQLMSLSKGWER IYDKETNFVRPKKADGKFIDNFNPMQVWRGFQEGNAWQYTFYVPHDAKALADKVGTEVFT NRLDSIFTQSQKLIFSGGTEVGAFAGLKTLYNQGNQPCLHISWMFNEAGKPSHTQKWVRA ILDEFYGTDGIHGYGYGQDEDQGQLGAWFVQSSIGMFDVKGLTAQEPAFGLGSPLFNKIT IRLNKDYYPGKQFVIQVKDNSKDNIYVQEYKLNGDVLNSTYLPFATFAKGGKLEVTMGNT PKDKY >gi|281305485|gb|ADEF01000029.1| GENE 29 33626 - 36529 1943 967 aa, chain + ## HITS:1 COG:no KEGG:BT_0065 NR:ns ## KEGG: BT_0065 # Name: not_defined # Def: alpha-galactosidase precursor # Organism: B.thetaiotaomicron # Pathway: not_defined # 391 865 304 789 845 242 33.0 7e-62 MKKFLFLTYVLTIAFNAMAAIQTSQTLPTNGKPEHCYTIADGQGYYCNATTSPTKNSTNY AKFAFYKGNKDDSYYIYNMTANKWVSYQVANQYSPKQGFVSMTDAKQTAAIYKITEISGG AFEIQPYTTTGVASIYLNWFQGVGNSNPEDGTVTLGLWTDNGTQDAGSRWFLTEVGVKHN YILFSDGMPSSATVTINGQVFKGLNAQGNQSITIEGDLRQSDVKVSVGGGSVAKVTIDNL NYQIDVKFIQFFTPTNGIEAEKKYPYLLQMPMAYIKMTDNNLHHTTKRSEADKFIMNESE SQGHYFIYDLSAKCYLTYINVANGSSQTHTNESYVRYATEKSKASTWQMYYLSDQSVAIL PSEITNPTASSPSLNFTGGIDYGCVLNLWRADDGNSAWKFVDPSAGSMPCATLMYALPGA PYMHKLTPNEGEKVMDVDLQAIPTLSLKEDRIALGNKYKYVSGTAPTNEGEYVYTVKTKG DNGGEETLTKVRLIVDAHMQSPTPMMSWLTWNWFAHSIAHDKIIDIAKGMQKYGLIDAGF NSIVLDDTWAKQTTDKNDLTYDASKFPDGITGLKTALKKINPQLKVGIYSDAGSMTCENY QPGSYGHEAQHVALFDSWGVDMLKYDYCNREASTQVSYSRMGKVIAELNKTRKAKGETPF VFNICEWGKTQPWTWGAEAGGSSWRATSDAREDWIGNNSRPGVIGGVDEVRRLWMYAGVN RFNDLDMMCIGLHGLGGPSNNTAAHQQNGGKIKGLTDSQARTQMSLWCMLASPLALTCDL RETPKGEANSIQDLPTPLITNADIETLTNKEILAINQDALGQQAEYMESLSTGKVNYSST GYDVYVKDLTGGRMAVSVTNRSGSTEKIPALKFINLYLKADTKYDCHEVWSKTDTQIENE LMVGSLKAYETKVYVLAIHKGDDTAIENIIGALQTNNETPRYDLSGRIVNENFKGVSIKN GIKTIRL >gi|281305485|gb|ADEF01000029.1| GENE 30 36693 - 38030 753 445 aa, chain - ## HITS:1 COG:PA3043 KEGG:ns NR:ns ## COG: PA3043 COG0232 # Protein_GI_number: 15598239 # Func_class: F Nucleotide transport and metabolism # Function: dGTP triphosphohydrolase # Organism: Pseudomonas aeruginosa # 1 443 1 442 443 273 37.0 5e-73 MKWQSLISNKRFGQELKHAERHDDRSEFKRDYDRLIFSAPFRRLQNKTQVFPLPGSIFVH NRLTHSLEVASVGMSLGMDVSTLLCERHPELRGTLFEQIGTIVSAACLAHDMGNPPFGHS GERAIQTFFTEGAGNYLQSRLSKRFWDDITHFEGNANAFRLLTHRFNGRRIGGFVMTYAT LASIVKYPFASSLAGNHGKFGFFSSEEETYIKVADELEIMKLSQPGEPIRYARHPLVYLV EAADDICYEIMDIEDAHKLKILSFEETAHLLMGFFDEETQRHIKQRIADEGLTDNNEKVV YMRACAVGKLENKCVEAFVANEEAILNGTFEGSLIDHINERQRQAYKHCSTLSYQRIYHS KPVLDVELAGYKIMQTLMETMIEAAVNPERFYSQQLLRRFSSQYDIQSPDLETRIMAVID YISGMTDVYALEIYQKINGISLPII >gi|281305485|gb|ADEF01000029.1| GENE 31 38194 - 38631 517 145 aa, chain + ## HITS:1 COG:FN1028 KEGG:ns NR:ns ## COG: FN1028 COG0756 # Protein_GI_number: 19704363 # Func_class: F Nucleotide transport and metabolism # Function: dUTPase # Organism: Fusobacterium nucleatum # 2 143 4 145 146 169 58.0 2e-42 MIQIKVINNGHQPLPTYATAQSAGMDLRANIEDPQILKPMERKLIATGLYIALPEGYEAQ IRPRSGLALKHGITVLNTPGTIDADYRGEIKVLLVNFSDKEFVINDGERIAQMVIAQHEQ GQFVEVTQLDETDRGAGGYGHTGVK >gi|281305485|gb|ADEF01000029.1| GENE 32 38670 - 40445 1605 591 aa, chain + ## HITS:1 COG:aq_854 KEGG:ns NR:ns ## COG: aq_854 COG0457 # Protein_GI_number: 15606205 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Aquifex aeolicus # 62 586 62 537 545 79 19.0 2e-14 MYQYHTPWTWMLFMLLFLSKPMLAQESQEEVVTEEGLKSMLWDDAQTRYDYLFLQAVCQQ LNGKNDLAFDLLKQCLAIHPQAAEAYFLQGQLYANQRNDSLALQNFEKAASLQPNNTDYQ ERVAQYYIGTGAYEKAITAYEQIYESHHERSDVLNILAQLYNQQKDYDKMLSIIDRIELA EGKSAELTLSRMNIYEMQGNKTRAYETLKALTKSFPNDVEYRVMLGNWLMQNDKQKKAYQ LFAQAYKEEPNNATVLASLYDYYNTVGDKDKAIDLRDRILMSKQTPLQTKLTMFQQVIRD NEAHQRDSTEVLNLFQKVMKANPKDADIASLAATYMYLKHMPTDTVQAALQHVIDIAPEQ STARLQLLQTYVPKKNWQKIIEICEQGAQFTPNEMAYYYYLAWAHVQQDHQKQAIEALRK GVSTINANSDAGLVSEFYAMMGDLLHQQGEKTEAFAAYDSCLQWKDDNISCLNNYAYFLS EDGKQLSKAEEMSYRTIKAEPSNATYLDTYAWILFLQERYTEAKLYIDQALQNDTDSLQS SVIIDHAGDIYAMNGQMQQALEYWTKALKLADKNDKAFIERKIKQKKYIKK >gi|281305485|gb|ADEF01000029.1| GENE 33 40442 - 41341 554 299 aa, chain + ## HITS:1 COG:no KEGG:PRU_2918 NR:ns ## KEGG: PRU_2918 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 296 3 285 287 160 33.0 5e-38 MKHIIHFLYLSFGLLFITSCASKKSMTKEPVKGEISKQSTQIPAEEMSKHLFVKKVIDNG VYAPNIVGKISFQLTRGSQRISAPGSLKMRKDKVIRLQLFIPFLGSEVGRIEFTPDGVLV IDRIHKEYVKATYDDVAFLRNNGLNFYSLQALFWNQLMIPGEKQVKASDLENFRVNLTQA GDFYPITFVKGAMTYLWNANKNNGRIATAVINYVNSQQEKSVLTWNYQNFKSIGLQYFPS TQSFTFTTRQGAKTRQHGEVTIAMDDIKTDADWEERSTVSNRYQRVDAEDIIGKLLYSK >gi|281305485|gb|ADEF01000029.1| GENE 34 41338 - 42969 1182 543 aa, chain + ## HITS:1 COG:no KEGG:PRU_2919 NR:ns ## KEGG: PRU_2919 # Name: not_defined # Def: putative TolA protein # Organism: P.ruminicola # Pathway: not_defined # 5 543 8 534 534 329 50.0 2e-88 MKRYLIILVALSLSISLSAQKKRTPIKRKAKTTTTTKKTTNVKKKNSKTAKYSTPSIKGL ENQRSQVRRKIKQQERALRANQSDVKKRLQDLLILNTAITDRQKNIETIENDIQHLDGNI QILHTQLQTLEEQLAERKKKYIKSMAYMTRSHTIQEKLLFIFSAKDFAQMYRRYQFVRDY AAYQRAQGESLKAKQQQVNDKQAQLHRVKGKKNNLLWKGKKEKETLEGQQNEQKQKVSSL QKEQKTIQVVISQQRQKDAALNAEIDKLIAIEVAKAKARAEAEAKRKAALAEAARKRAAE VARKKAEAEAEARENARRIAEAKQREEQQKAQARAAAAAAEKARQEQSEAQARAAAQARE AAEQKAREAEAARVAAERKAVSDAVRNKENIERAQKRADESLKMSSVDRMLSGGFEANRG RLPIPITGGYRIVSHFGQYQVEGLKNVTLDNKGINILGSAGCQARSIYDGEVSAVMTYGG TTVIMVRHGSYISVYCNLSSVRVVKGQKVSTRQALGTVGKDNILQFQLRHGTAKLNPESW LGR >gi|281305485|gb|ADEF01000029.1| GENE 35 43025 - 43750 533 241 aa, chain - ## HITS:1 COG:no KEGG:PRU_2337 NR:ns ## KEGG: PRU_2337 # Name: not_defined # Def: putative DNA repair protein RecO # Organism: P.ruminicola # Pathway: Homologous recombination [PATH:pru03440] # 1 241 1 241 241 265 54.0 1e-69 MLVKTEAIVLRALKYGDAQLIVDLFTERMGCVTFIHRVKKTKHGRIGVQFFQPLTHLEIE YDALHNGRLPRLKEVRMVNPYLSIPFDALKLSISLFIAEFLYQCVKGEQASGALYQYVTT SVHWLDAATAGFANFHLVFMLHLTRFIGFYPNLEDDTGHDFFDLRNGVFTPNQPAHGDFI VPSEASKIRLLMRMNYDSMHVFRFTRQERNRCVEMILKFYRLHVPSFPELKSLTVLQTLF Q >gi|281305485|gb|ADEF01000029.1| GENE 36 43970 - 44224 303 84 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150003956|ref|YP_001298700.1| 30S ribosomal protein S20 [Bacteroides vulgatus ATCC 8482] # 1 83 1 83 84 121 71 1e-26 MANHKSSLKRIRQDKVKTLHNKYYAKTMRNAVRKLRAMDNKDEAIKLFPVVQKMLDKLAK TNTIHKNKAANLKSSLSQHINSLG >gi|281305485|gb|ADEF01000029.1| GENE 37 44284 - 44976 519 230 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880625|ref|ZP_06289331.1| ## NR: gi|282880625|ref|ZP_06289331.1| hypothetical protein HMPREF9019_0488 [Prevotella timonensis CRIS 5C-B1] # 1 230 6 235 235 474 100.0 1e-132 MVQKITFLLVLSLFAISSMAGVVFTTTQKVSFQRQRYQVSVEFPLEGEAEAVGSIRNWIN DVVGVEGEQASDERTFCHVLERSYQDYLETNLEGSRHIEIYRAYEDENCVTFESAITDQD SVVWKTCDCATFSKKDGHRLKINEIFNCSEERIKQLMWEWRGDLPVEVASANDLIVGEVG FIDGWIVVIGPARNYTGAPFRIRYQAAEPFLLGSKRGGYYHDTHTKSSRK >gi|281305485|gb|ADEF01000029.1| GENE 38 45173 - 47146 1760 657 aa, chain + ## HITS:1 COG:MA1584 KEGG:ns NR:ns ## COG: MA1584 COG0187 # Protein_GI_number: 20090442 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Methanosarcina acetivorans str.C2A # 1 650 1 626 634 670 55.0 0 MAEKQNTENNYSASNIQVLEGLEAVRKRPAMYIGDISEKGLHHLINETVDNSIDEAMAGY CTDIEVTINEDESITVQDNGRGIPVDQHEKLHKSALEVVMTVLHAGGKFDKGSYKVSGGL HGVGVSCVNALSSHMTSQVFRDGKIYQQEYEKGKALYPVKVVGETDKRGTRQQFWPDGSI FTTTHFQWDIIARRMRELAFLNAGIRITLTDLRPNEEGKTRTEVFHAKDGLKEFVRYVDR HRTHLFDDVIYLKTEKQGIPIEVAIMYNTDYSENIHSYVNNINTIEGGTHLTGFRAALTR TLKTYADSEPTISKQIEKAKIEIAGEDFREGLTAVISIKVAEPQFEGQTKTKLGNSEVSG AVQQAVGEALSNYLEEHPTEAKQICEKVVLAATARIAARKARESVQRKNFMSGGGLPGKL ADCSNKDPKDCEIFLVEGDSAGGSAKQGRDRYTQAILPLRGKILNVEKVQWHRVFEAESV MNIIQSIGVRFGVEGEADREANIDKLRYDKIIIMTDADVDGSHIDTLIMTLFYRFMPKVI EEGHLYIATPPLYKCSYKNKASEYCYTEQQRQAFIDKYANGEEDSKSIHTQRYKGLGEMN PEQLWETTMNPKTRLLKQVTIENAADADEIFSMLMGDDVEPRREFIEKNATYANIDA >gi|281305485|gb|ADEF01000029.1| GENE 39 47239 - 48279 581 346 aa, chain - ## HITS:1 COG:no KEGG:BDI_2912 NR:ns ## KEGG: BDI_2912 # Name: not_defined # Def: aminopeptidase C # Organism: P.distasonis # Pathway: not_defined # 30 339 23 378 389 199 34.0 1e-49 MNRIWTACLLVIAILMGCSHPLPPTRVDERFADDVLIKTTPVKNQGASSLCWLYAMLGTI ESERLMMGDSVDLSVDYLARKLLEEQTQAAFFMRGKKPIQLRGVSSMTLDLIQRYGLLHE DSYPDKNLNYNVLRRKMRHLASCASSLSQLRHLMEDKLDQELGSLPRFVFFLHAEYTPLE FAHSVCLPHEYLSLTSFTHHPYGHSFVLEIPDNQFRQAFKNLPLDTLMTHLKKALQAGHP VCWEGDISEPGFSFANGVATLDNAPVHVTAEMRQRGFETLKTTDDHCMVLVGMAHDRQGR VFFKAKNSWGTNSRYQGYMYLSEAYVRLKTIALYMSQAAYYQSKAR >gi|281305485|gb|ADEF01000029.1| GENE 40 48849 - 50105 1186 418 aa, chain + ## HITS:1 COG:aq_1015 KEGG:ns NR:ns ## COG: aq_1015 COG0826 # Protein_GI_number: 15606313 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Aquifex aeolicus # 9 415 5 400 409 277 36.0 3e-74 MKYQLSDFEIMAPVGSRESLAAAIQAGAGAVYFGIGQLNMRSHSANHFTIDDLHDIADTC KAHGIKTYLTVNTVIYGEDIPTMHQIIDAAKDANISAVIASDVAVMTYCLERGVEVHLST QLNISNIEALKFYARFADVVVLARELNMDQVKEIHQQIVAQQICGPHGGLVRIEMFCHGA FCMAISGKCYMSLHDANRSANRGECVQICRRSYTVTDNETGNQLEIDNKYIMSPKDLKTV RFIDRMMEAGVRVFKIEGRARGPEYVYNVVTCYKEAIQSVIDGTFTEEKKDAWDERLSAV FNRGFWDGYYQGQKLGEWTKNYGNKATEKKILVGKVVKYFSKLGVAELAVEAAEIEVGEH LLITGPTTGVMYFDANEIRYELQPVPKAEKGWRISIAVPDKVRPNDKLFKLVKTQGKR >gi|281305485|gb|ADEF01000029.1| GENE 41 50131 - 50553 485 140 aa, chain + ## HITS:1 COG:YPO2399 KEGG:ns NR:ns ## COG: YPO2399 COG2166 # Protein_GI_number: 16122621 # Func_class: R General function prediction only # Function: SufE protein probably involved in Fe-S center assembly # Organism: Yersinia pestis # 7 129 7 131 140 105 41.0 3e-23 MTINELQDEVIEEFSEFTDWMDKYQMLIDLGNELEPLDEQYKTESNLIDGCQSRVWLQCD EKDGRLIFTADSDALIVKGIIALLIRVVSNHTPKEIIDADLYFIDRIGLREHLSPTRANG LLAMTKQMKMYAVVYQSKLL >gi|281305485|gb|ADEF01000029.1| GENE 42 50569 - 51099 289 176 aa, chain + ## HITS:1 COG:NMB0931 KEGG:ns NR:ns ## COG: NMB0931 COG0566 # Protein_GI_number: 15676825 # Func_class: J Translation, ribosomal structure and biogenesis # Function: rRNA methylases # Organism: Neisseria meningitidis MC58 # 24 176 96 245 250 75 32.0 4e-14 MRKLKTIEMNRLSVEEFKEADKLPLIVVLDDVRSLYNVGSVFRSCDAFRVEAVYLCGITA TPPHPEIHKTALGGEDSVAWRYFASATEAVEELKRNEYFVYSIEQVEGSTKLQHLTLNRH QRYAVVFGNEVKGVNQTTVDACNGCLEIPQFGTKHSLNVSVTAGIVVWEFARKMFL >gi|281305485|gb|ADEF01000029.1| GENE 43 51193 - 54363 2554 1056 aa, chain - ## HITS:1 COG:TM1193 KEGG:ns NR:ns ## COG: TM1193 COG3250 # Protein_GI_number: 15643949 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Thermotoga maritima # 35 1051 7 981 1087 626 35.0 1e-179 MKKILLIAGYLSFLGFPASSHSFPIEEQRITTDTEWRDLQDNEVNRFKLHTNYFAYESVE KALSGDRKASENYLSLNGTWKFHYAETPDDRLSDFFISNLNDSSWKSMPVPGLWELNGYG DPVYVNVGFAWRGHFKNNPPLVPIKDNHVGSYRRIINIPDNWMGRQVIAHFGSVTSNIYL YVNGKYVGYAEDSKVAAEFDITPFLKKGRNLIAFQVFRWCDGSYCEDQDFWRLSGVGRDC FLYARNKDVQVSNLKVNTDLQNDYKDGVLSVDLDVKGNPIVDFDLLDANGVSVSKQTINF KGLQHRNVQFNIQNVRKWTAETPYLFTLLTTVKKGNKVVEVIPQRIGFKKVEIKNSQLLV NGQPIYIKGVNRHEMDPDGGYVVSRERMIQDIQIMKQFNINAVRTCHYPDDPQWYDLCDE YGLYVVAETNQESHGFHYGDDSPAKQPMFAKQILERNQHNVEMYYNHPSIIMWSMGNETV DGPNFTAAFNWIKSVDKSRPIHWERAEKGANTEVYCPMYRSQQACEEYAKSTAPADQKPL IQCEYNHAMGNSGGGLKEYWDLVRKYPKFQGGFVWDFVDQALRDKKRGIYAYGGDYNNYD PSDNNFNCNGLISPDRVPNPHMYELGYEYQNIWVQPIDLMQGKIQIKNEYFFRDLSNYAL VWTVLANGKAVQSGTVNELQVQPQQSVEVVLPCHLAQITSLPENEDVQFNVDFVLKQPEP LMQKGQRVAYQQFPVKDYYVEKGTTPLPEIEPLVWYGKLKKISKKKDAQLTFASRQVTVA FDKQTGFLAQYMVNGNSYLGEGGTLKPCFWRAVTDNDMGAGLSTKYQVWRNPTLKLIDMK VKQLKNKDKKFQVVTSTYDMPEVKAQLIVDYAIYPSGEMRIEQKLQTTQGANVPNMLRFG MVMQLPYDMEQSEFFGRGPIENYADRKFSQRFGIYQQAADEQFYPYIRPQETGTKSDMRW WKQTNKRGMGLLVRSDKPFSASALHYTVEDLDDGVAKEQRHVQQVPKSLFTNLYINSEMA GVGGVDSWSAKAEALEAYRVVYGDKAFRFTLLPVGR >gi|281305485|gb|ADEF01000029.1| GENE 44 54548 - 55543 744 331 aa, chain + ## HITS:1 COG:ECs3919 KEGG:ns NR:ns ## COG: ECs3919 COG3150 # Protein_GI_number: 15833173 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Escherichia coli O157:H7 # 17 107 3 102 193 61 39.0 2e-09 MDTVRQKQYPDLMVGKTIMYVHGFMSSAQSGTVSILKELLPKANIIAEDLPIHPTEAIEL LKKLCQEHQPDLIIGSSMGGMYTEMLKGYDRIVVNPAFQMGETMHDHNMMGKQTFLNPRK DGVQEVIVTKSLVNEYKEITQQCFQAITDEERKRVYGLFGDKDPLVHTFDLFYEHYPNAI HFHGAHQLTNKVAFHYLIPVIRWIDDKQEKRERPIIYIDYETLHDSFGKATSSMHKAYEM LIEKYQVLITAPAPTNEHTSLTDVQTWVEEYLSTPAYNKVIFTNQKHLLLGDYLITPTLE KDFMGTCLVYGSDEFKTWEELITYFNRLGGQ >gi|281305485|gb|ADEF01000029.1| GENE 45 55609 - 56076 447 155 aa, chain - ## HITS:1 COG:MA3407 KEGG:ns NR:ns ## COG: MA3407 COG0590 # Protein_GI_number: 20092219 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Methanosarcina acetivorans str.C2A # 1 155 6 162 162 197 61.0 5e-51 MNQKDIMRRAIALSEESVLSGGGPFGAVIAKGGNIIAEASNTVTIDHDPTAHAEVNAIRK ATQKLGTFDLTGCDIYTSCEPCPMCLGAIYWAHLDRIFYANNRKDAARIGFDDDFIYQEI ALSPAERHKQMRVLLPDEARKAFDSWAEKLDKTEY >gi|281305485|gb|ADEF01000029.1| GENE 46 56248 - 59679 1954 1143 aa, chain + ## HITS:1 COG:sll1582 KEGG:ns NR:ns ## COG: sll1582 COG1112 # Protein_GI_number: 16329815 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases and helicase subunits # Organism: Synechocystis # 208 1138 219 1095 1118 268 27.0 5e-71 MNKTDTYITAKELYQQVGKIIETNEHSPALVNKMMHETLVLTCAAGLRNSTYSFGDLRAR VDRLCSQCQISAQDTHAIHRMRRHSNSSSRLLPEDVLYDLRSLCVFISAVFREAIPSFLV GKLPARGQELQKGLRLDKRYIRCIVRHWDNQYIWVLPDGDTDEQLLQVEYASKQQFADMS YLQEILRTGMQLNLLDCQIEEHLITPRLIVVEPDCLIDISSLAACFTDYGHHPAVYTLNR MREKPNTQHTILGNFAGCALDNMVFAQPDRPFSLAETLKENYQEKALEYCTCTTLNPTLF KTDAAKQAQNMQQIVTELFKTYQRNHAILEPSFVCETLGIQGRVDLMTTDFRLLVEQKSG KNMNLEYNRRNSHGTQHVESHYVQALLYAGVLKYNFQLSNSATQIFLLYSKYPLPAGLLS VTRLDMLLQETIKLRNLIVATDMNSAIGGFGDMLNQLNVQTLNTAKNDTFFYNRYLLPQI KTITQPLQEMSSLENAYFCRMMTFVLKEQLISKAGSTDGNGRSNADLWSMPLSEKREMGN IYTGLHITKKTRTGQRGFDEITLSVPDQGAEFLPNFRRGDMVYLYGYHPDAVPDVRRSIV FKGFMKDIKTHEIVIHLADAQQNEDILFVHRDEDTHPRRTPLVYAVEHSASDASGSSAFH ALHTLMTTHKDRRDLLLGQRKPQADKTRTLTKSYHPDYDKVLLQAKQACDYFLLVGPPGT GKTSMALRYMVEEELASSGTNLLLMAYTNRAVDEICSMLTSADLDYLRLGNEFSCEPRFT SHLLGQAIKHHTKLTDLQRRLEKTRIIVSTTSMMMHKPFIFALKHFSLAIVDEASQILEP NLIGILAHHCSTANATTSNEENKPSIDKFILIGDYKQLPAVVQQSEEESKVDVPELLSIG LSNCRNSLFERLIHWEEQQGRTDFTGILHKQGRMHPELSAFPNRMFYFKEQLQPVPLPHQ LAVDIGYLGEPKDETDQQLVQHRLLYYASKKNETMGKSDKVNIDEAQKVADLLNRIYTLT QKNFDPLRTVGVIVPYRNQIAMIRQEIEKTGNTALKDVCIDTVERYQGSQRDIIIYSFTI QHLYQLDFLTSNSFYEDDKLIDRKLNVAITRARKQLIILGNQPILSANPLFKALIEQIPH HLR >gi|281305485|gb|ADEF01000029.1| GENE 47 59837 - 60409 651 190 aa, chain + ## HITS:1 COG:no KEGG:PRU_1474 NR:ns ## KEGG: PRU_1474 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 24 187 14 168 171 121 48.0 2e-26 MKKMILMAVVLLSSVGAFAQNEVGSLSLKPQVGVTGATMTEFDNTKMKVGFVAGAELEYQ ITDIISLSAGAMYAQQGVKFNDGVKLDFFGKKFEKKDTKLDLGYINVPVMANVYVVPGLA VKLGVQPAFLVGKNDYNNKTFDFSMPVGVSYEFANVFIDGRYNWGITKAWENGKAKNSVF QVTLGYKFGL >gi|281305485|gb|ADEF01000029.1| GENE 48 61355 - 61822 639 155 aa, chain + ## HITS:1 COG:SMc01218 KEGG:ns NR:ns ## COG: SMc01218 COG0782 # Protein_GI_number: 15965326 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Sinorhizobium meliloti # 4 144 7 147 158 116 45.0 1e-26 MAYMSQEGYDNLVAELNRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKI NKMKLTIAEAKIVDVSRLSANMVQILSKVEMTNLKTKSKMTYTIVSESEADLKAGKISIK TPIAQGLLNKKVGDEVEIKIPAGTIHLRIDNISIE >gi|281305485|gb|ADEF01000029.1| GENE 49 61835 - 62233 403 132 aa, chain + ## HITS:1 COG:MA0811 KEGG:ns NR:ns ## COG: MA0811 COG0537 # Protein_GI_number: 20089695 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Methanosarcina acetivorans str.C2A # 3 125 17 146 150 84 38.0 6e-17 MDIFSKIAAGEIPSYKCAEDAQFYAFLDINPLKEGHTLVIPRREVDYIFDMEDEELAAFQ MFAKKVAKAIKSAYPCKKVAQVVLGLEVPHAHIHLIPMDNEGDVDFHKKGIIFSEEEFTA IAERIHSEFMKL >gi|281305485|gb|ADEF01000029.1| GENE 50 62293 - 62832 462 179 aa, chain + ## HITS:1 COG:SA0635 KEGG:ns NR:ns ## COG: SA0635 COG1611 # Protein_GI_number: 15926357 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Staphylococcus aureus N315 # 2 158 3 159 188 115 35.0 4e-26 MKIAVFCSANDHIDPVYFEKTQELGNWMAEEHHDLVFGGCNLGLMDCIAKAVHQRGGRTI GVIPSIIEKNGKVSDAVDIEIPCDNLSDRKELMLAQSDISIALPGGVGTLDEIFSIVSAH SIGYHHHVVILYNINGFWDSLIALLDDLTQKGMIRGDYHQQIKIAHSLDEIAHFINENA >gi|281305485|gb|ADEF01000029.1| GENE 51 62917 - 63384 368 155 aa, chain - ## HITS:1 COG:no KEGG:PG1471 NR:ns ## KEGG: PG1471 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 149 1 147 155 105 39.0 7e-22 MKYIDKHLMEGEQVVYIPQLHSSLYWGALSWAVFGIVIMVFPTDGTLFKIQLSASLILIL ISVLKCIKMYGGRQYVLTNRRIIAKKGLVQRDSLELLLRKCEGVQIRQSVLGRIFDYGTV IVTTGEATNYFEYIKNPIAFSSAINQMIDSLKSFE >gi|281305485|gb|ADEF01000029.1| GENE 52 63364 - 63627 141 87 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFIYILHVISLKLLPLHYHELTVVVASIHLLESYFHPPLLTASSPTSIDEQLFYNREIEL SLLKVSLCNLNANGISQLIFMMMSTSY >gi|281305485|gb|ADEF01000029.1| GENE 53 63517 - 65712 1133 731 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 55 731 41 703 730 441 36 1e-123 MGKGKKGGKRMSKKQLSEKLEGFFSTQPGQTFGLKDIFRSLRLDTHPLKMLAIDIMEEMA WDDFLTKVSDNSYRLNEMGQILEGVFRRKGNGKNSFIPDESDKPIFVPERNSMSALNGDR VKVSLLARREKHIREAQVIEILSRARDQFVGKLRVEKDIAYLVTQENLFVHDILIPKSKL KGGKNNEKVVVKVTKWPDPEHKNIVGQVVDILGDTGDNDAEMNTILAQYGLPYKYPKAVE QAADKISGDISQAELQTREDFRDVFTCTIDPKDAKDFDDALSIRKLSRGMWEVGIHIADV THYVKEGSIIDREAQKRATSVYLVDRTIPMLPERLCNYICSLRPDEEKLCYSVIVNMDEQ GVVANTRIVHTVIKSNRRYAYEEVQQLLEENGVKDGTGQPAPQPRNGKYVGENAEELIML DKLAKKLREARFKNDAVKFDSEELHFDIDETGKPIRCYFKRSKDANKLIEEFMLLANRTV AESVGKVKKGKKSKTLPYRVHDVPDPQKLENLKDFVVKFGYKVKTEGTKGEMARSLNKLM DAVEGKDEQKLVQTVALRAMMKAKYTIHNIGHFGLAFPYYTHFTSPIRRYPDMMVHRLLT RYAQGGRSANKEYYEELCEHSSEMEQIAANAERDSIKYKMVEFMGEHLGEVYDAHISGIQ NYGIYCEIDENHCEGLVPIRDLDDDYYDFDEKNYLLVGRRHHHKYQLGDAIRIKVAQANL EKRQLDFTIVK >gi|281305485|gb|ADEF01000029.1| GENE 54 65850 - 66845 667 331 aa, chain + ## HITS:1 COG:YPO1979 KEGG:ns NR:ns ## COG: YPO1979 COG0451 # Protein_GI_number: 16122221 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Yersinia pestis # 1 324 1 328 338 102 30.0 1e-21 MNILITGASGFVGSFIVSEALQRGMEVWAAVRPSSSREYLQDKRIHFLTLDLSSTETLVK QLKDYAFDYVVHAAGITKSVHAEDFFKVNTEGTKHLVDALLQLRMPMKRFIYISSLGVFG AIKDTMPYHEINEDDVPKPNTHYGKSKLAAEQYLDRIGNDFPYVIIRPTGIYGPREKDYY LVAKSIKNHVDFSVGFQRQDLTFVYVLDVVQAVFLALDRGMNGRKYFITDGKVYQSNVFN DLIRKELGNPWCLHLHAPIWLLRLIANLCEYLGKYTGKPTTLNKDKYNIIRQRNWRCNIE PTMDELGYHPHYTLSDGVPQTIKWYRENQWL >gi|281305485|gb|ADEF01000029.1| GENE 55 66882 - 67836 607 318 aa, chain + ## HITS:1 COG:no KEGG:PRU_2755 NR:ns ## KEGG: PRU_2755 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 5 317 3 315 318 327 53.0 4e-88 MNYFISDFFTREKKPVRGLLPIEWAMFLYMGFTFLMILLTYTKLVNPQSMLIGRVQIAII TMALWGVYRLLPCQFIKVIRSFVQMGLLVWWYPDTYELNRVLPNLDHLFATWEQQLFGMQ PALAFAHHCSSPIISELMDMGYASYYPMVAAVPLFYLFFHRKEFQRSAFVLTAAFFLFYA IYVLLPVVGPTFYFKAIGLEQAAKGVFPPMYDYFNFHQDCLPSPGYHEGFFYHLVEDAKA AGERPTAAFPSSHVGISTICLLLIGHTKNKMLLYIMLPFYLFLCMATVYIQAHYAIDAFA GLITGVIFYYFLMYISRN Prediction of potential genes in microbial genomes Time: Sat May 28 07:00:00 2011 Seq name: gi|281305476|gb|ADEF01000030.1| Prevotella timonensis CRIS 5C-B1 contig00016, whole genome shotgun sequence Length of sequence - 9155 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 3, operones - 3 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 349 - 1053 514 ## BT_2990 hypothetical protein 2 1 Op 2 . + CDS 1122 - 1610 286 ## gi|282880646|ref|ZP_06289351.1| hypothetical protein HMPREF9019_0559 3 1 Op 3 . + CDS 1639 - 2340 440 ## BT_2991 hypothetical protein + Prom 2390 - 2449 4.7 4 2 Op 1 . + CDS 2536 - 2760 161 ## BVU_3415 hypothetical protein 5 2 Op 2 . + CDS 2821 - 3855 649 ## RB2501_07125 hypothetical protein 6 2 Op 3 . + CDS 3901 - 5229 772 ## Tbis_3032 UvrD/REP family ATP-dependent DNA helicase 7 2 Op 4 . + CDS 5226 - 6983 831 ## gi|282880651|ref|ZP_06289356.1| hypothetical protein HMPREF9019_0564 + Term 7171 - 7212 4.3 + Prom 7046 - 7105 4.4 8 3 Op 1 . + CDS 7317 - 8777 1034 ## COG3344 Retron-type reverse transcriptase 9 3 Op 2 . + CDS 8779 - 9154 205 ## Predicted protein(s) >gi|281305476|gb|ADEF01000030.1| GENE 1 349 - 1053 514 234 aa, chain + ## HITS:1 COG:no KEGG:BT_2990 NR:ns ## KEGG: BT_2990 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 232 254 488 488 257 54.0 3e-67 MTELYRVFIEKRYPDKWKKGYAEKAHYSLGLFLVQYLCNGFNMADAAELKYSKFYFDSGR KAFKFKRVKTRNRTEGDGEVIIPIIEPLQKILDEIAAEPILNGFVFPDILQGATHKANKR KRISQENSNVQDRVIKICEDVLHWEVRPSGTWCRHSYGTNLTHAKVEERYISQSMGHAID KTITERYIAQYPLENMFEYNNKLLDLQPKVTEEDVKNMTEEQKTEMLLKLLANK >gi|281305476|gb|ADEF01000030.1| GENE 2 1122 - 1610 286 162 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880646|ref|ZP_06289351.1| ## NR: gi|282880646|ref|ZP_06289351.1| hypothetical protein HMPREF9019_0559 [Prevotella timonensis CRIS 5C-B1] # 1 162 1 162 162 301 100.0 7e-81 MREAMDSVYSLEQEHLEEYSRFSLDMMKVERNNFSSLERIFKMAAGFVPTSVLVECSKLP ARDSKGVQSAVESTTAASRVVDELMGLKGYLRFGVYTETVGEKETPGQSEQFLIREFSLS DEALSEEDDEHIYVPRDCPRVLGIAAVLRSDGSIHFREGALC >gi|281305476|gb|ADEF01000030.1| GENE 3 1639 - 2340 440 233 aa, chain + ## HITS:1 COG:no KEGG:BT_2991 NR:ns ## KEGG: BT_2991 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 2 233 173 398 398 71 25.0 2e-11 MLSAIHALPEIFVKLRDQIHAGSNPLLMCTLYYICYDHGLPRSAMALSKVSLGAKQISYI RESAKTVIEKLMETSVTNVLDKKAEWTKQIRDIEEAELKQAMKNTLGNTKGKHGCRTFQQ EELSIDDILIADDKQALKEAFLMALNDMEHEYETAYIKAALIRSHHLEPHISFSVFIRAI CTFSGREYKYDTAQRVDSFIYHEQKRFKTSKSSKWQHGRRIVSYLTETFDEIQ >gi|281305476|gb|ADEF01000030.1| GENE 4 2536 - 2760 161 74 aa, chain + ## HITS:1 COG:no KEGG:BVU_3415 NR:ns ## KEGG: BVU_3415 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 63 1 63 69 86 71.0 2e-16 MEDINRIKVVLVEKKRTNKWLAEQLGVNPTTVSKWCTNSSQPDLGNLLKIADLLGVDIKE LLVREYKQYLLSQK >gi|281305476|gb|ADEF01000030.1| GENE 5 2821 - 3855 649 344 aa, chain + ## HITS:1 COG:no KEGG:RB2501_07125 NR:ns ## KEGG: RB2501_07125 # Name: not_defined # Def: hypothetical protein # Organism: R.biformata # Pathway: not_defined # 1 340 1 336 336 184 34.0 4e-45 MPTNKNALTRYKYLDELLSDRHHFFGIHDLTDRVNEKLITSGLPEVTQRCIEKDINYLEY APFFAEIERFRVSGRRCVRYADPSFSIFKKELSEEESNLILEVLNTIGQFDGLTHFEWLE RFKIGLGLKERTKVICFSNNPYLQNSNLLGVLFDNTSNEVVVELEYHTFSDTGKKTIVFH PYMLKQYNNRWYIIGAANSDRKILNFALDRIDKVTPLPEVKFVPCEEDLAERFEDIVGVT LYEDREVEHIIFWVSDYSKDYIITKPIHESQKSLRNNAINTLLKKYPNIGSGRIFSIDCI PNYELIRELCSFGKELIVLEPSSIKDEIFKRISLMVEEYSCVRT >gi|281305476|gb|ADEF01000030.1| GENE 6 3901 - 5229 772 442 aa, chain + ## HITS:1 COG:no KEGG:Tbis_3032 NR:ns ## KEGG: Tbis_3032 # Name: not_defined # Def: UvrD/REP family ATP-dependent DNA helicase # Organism: T.bispora # Pathway: not_defined # 193 425 452 685 687 69 25.0 3e-10 MRLEKWFISNLDDSQRNIIVQNIDKSIAVRGAAGSGKTNLAIHRALQAKNKGSYAILIFT IALKRMIAYGMEALGLDKERIAYEWAWTHRGFDLTGDVYCQKNPKAGIIMRNVLFLVNDM DVRKFIRVDRTADTYGVDFADWVDSKFYHAFGRRTSRFEEVTMDTDFSVTDTDNYELIPS GIMYKQTKEKIDYLIVDEAQDFNITDYQSKIKPKVGKSLSLFGDSAQQMNKNGSKIEDIA IALDYDRLSLDYNYRLPKSIAKVAQQIQSSNVDLMSNNRKDGGNSDYPNYPKPIIAKFGS RQEELQGILNRIQMEDLDDVAILVPTEADVMEVNKFLNDNGVQTQVHYRTGNVVPFRTIN TLDFSNNDLPCILTYYAAKGSEFDNVFVPFANAANPKDRNSFYVACTRSSRNLVISYSGK RTPYLNDVSKEFITELDYTAKR >gi|281305476|gb|ADEF01000030.1| GENE 7 5226 - 6983 831 585 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880651|ref|ZP_06289356.1| ## NR: gi|282880651|ref|ZP_06289356.1| hypothetical protein HMPREF9019_0564 [Prevotella timonensis CRIS 5C-B1] # 1 585 1 585 585 1071 100.0 0 MKYYISINSWNLLESFVTESLSPFAFYNKRNFGNNLSRFINSSNDKINFIVLSTVDNGGD YSIIVNDTILDTSSIKSVKGLKTMFVYSKTLYYKKGTVSFRFGSQASLDAFVAESQILFE VKCIDKYKDDFFIKEVKEKKASSTLRRLGDSFSFEQQTLAKNDNQFNIIKGAIVGYARGA LTTSDSSDLRLVSMIKDIKNSFAGLNTQIMVNDSEVERSEAYIIKLKECKKSFNEVLHEK TNYFDILTQLFLEVRNLASLRCAELSRYKVDNKERLIDSLEGQKQDIEYKICKIERTSNI SILKAELKQIKDEEKRLGERSGKTRIYFKKDTPEYNRKQELKAILKEFEESNEDYKALLR KLDEINTSIQNANSGKSQYDAALSALFVRISDITNDLQKKFDQGKSLNAVDFSCIEYTQE YGLELREASEDNAELEYFNVLIKTIVSRETLETISEQFILSLIEKSAIAFKSCPSYESEK GKLITECLRNYWRYKHNQCTGFVIPGDMPVLQSVMSFFLKPFGFDQIERYMMNKKFTEKK YAMMLWAACNGYAALPKTFTSVLYQDEENYMAMDNLLEDIMHQLE >gi|281305476|gb|ADEF01000030.1| GENE 8 7317 - 8777 1034 486 aa, chain + ## HITS:1 COG:MA2102 KEGG:ns NR:ns ## COG: MA2102 COG3344 # Protein_GI_number: 20090946 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Methanosarcina acetivorans str.C2A # 62 302 81 295 563 144 35.0 5e-34 MDKTQITQIASQMSTREDLLALLNRIKQDEIRELGFDTDKFYPFTMKHLLYYCNPNHVFH RYHQFKIKKKSGGFRQITAPRNQSFMMLLQTVNEILKAMYSPSDYAMGFTEERSVVTNAS VHKGQNYVFNIDLKDFFPSVEQRRVLKRFGAKPFNFNPEIALLLSGLCSMRVKREQADET QTHDLDKEFVYVLPQGAPTSPIITNMICDTLDRRLAGLARRFGLRYSRYADDITFSSMHY VYAEKGEFRKELARIIGSQGFTINDTKTRLQKRGSRQEVTGIIVSDKLNVTKKYVREIRS LLYIWEKYGYSATMAKFLPKYKAEKGHVKKGNPDLTNVLDGKLMYLKMVKGESDIVYARL FEKFQQLVAKDSGGDKKNPYGITYMETVPLLKFEQDKNTEVAIFHKEEGKRYATFEFNGV KQVVSINKDVSQNDEMQKEKLAISNCRNPKGEQFWLIHLVNKVTVYNLKPVDIDELNNDL DSLLST >gi|281305476|gb|ADEF01000030.1| GENE 9 8779 - 9154 205 125 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDEKLIATVNKIKLLAEQNPEFNQTMQKLFGNTVSASVVNINSTITEDISAIRSALEIRA NASLTYSFVRNQRLRDQLIIDNLRMENAALNLKEPEADRFYVFCVNAFYQVENILNYFYY TSFPE Prediction of potential genes in microbial genomes Time: Sat May 28 07:00:52 2011 Seq name: gi|281305462|gb|ADEF01000031.1| Prevotella timonensis CRIS 5C-B1 contig00060, whole genome shotgun sequence Length of sequence - 11539 bp Number of predicted genes - 15, with homology - 13 Number of transcription units - 7, operones - 3 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 67 - 1275 646 ## gi|282880654|ref|ZP_06289358.1| hypothetical protein HMPREF9019_1780 - Term 1289 - 1332 -0.6 2 2 Tu 1 . - CDS 1382 - 2845 1009 ## BF2900 hypothetical protein 3 3 Op 1 . - CDS 2923 - 3294 163 ## 4 3 Op 2 . - CDS 3388 - 4218 437 ## gi|282880656|ref|ZP_06289360.1| hypothetical protein HMPREF9019_1782 5 3 Op 3 . - CDS 4261 - 4554 222 ## RB2501_04950 putative excisionase 6 4 Tu 1 . - CDS 4665 - 5039 228 ## gi|282880658|ref|ZP_06289362.1| conserved hypothetical protein - Prom 5181 - 5240 4.4 - Term 5114 - 5156 4.2 7 5 Op 1 . - CDS 5322 - 6161 638 ## gi|282880659|ref|ZP_06289363.1| hypothetical protein HMPREF9019_1785 8 5 Op 2 . - CDS 6165 - 6779 355 ## FMG_0666 serine/threonine phosphatases 9 5 Op 3 4/0.000 - CDS 6776 - 7642 473 ## COG4849 Uncharacterized protein conserved in bacteria 10 5 Op 4 . - CDS 7632 - 8621 566 ## COG4861 Uncharacterized protein conserved in bacteria - Prom 8806 - 8865 2.1 11 6 Op 1 . - CDS 9463 - 9789 108 ## 12 6 Op 2 . - CDS 9632 - 9994 269 ## gi|281424558|ref|ZP_06255471.1| conserved hypothetical protein 13 6 Op 3 . - CDS 10011 - 10340 397 ## gi|282880663|ref|ZP_06289367.1| hypothetical protein HMPREF9019_1789 14 6 Op 4 . - CDS 10353 - 10700 267 ## BF2919 hypothetical protein - Prom 10736 - 10795 2.5 + Prom 10994 - 11053 4.6 15 7 Tu 1 . + CDS 11079 - 11303 243 ## gi|282880665|ref|ZP_06289369.1| conserved hypothetical protein Predicted protein(s) >gi|281305462|gb|ADEF01000031.1| GENE 1 67 - 1275 646 402 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880654|ref|ZP_06289358.1| ## NR: gi|282880654|ref|ZP_06289358.1| hypothetical protein HMPREF9019_1780 [Prevotella timonensis CRIS 5C-B1] # 1 402 1 402 402 711 100.0 0 MGIFDSLFSKKKKDSTTPKVKVEPNMHDYQKTIVSAESRESLLKHADNGRPVVISGGDFS SKTVIIVSKPSKYPNHTFDGKSYPVVTVDRLTIDTYEQVTFIGDIPQEEIDRLYEIEKQR RDAAEKEKDEFDKNQFKAEYEPHRYMRPAITQTKRSDAPKPKPKPIIKEEEEEEKFPVYT LDAEGNMIPLEEPEEKPKPAPNSPWMTDEELTTFEESRKNQVKEAHFDMEVSEEETYIYK LNQLIASLPEFDFYNGDNDKDVSEDHPSVIAIRALQKEADEIMAHGEHFEADKNWTQAAI CYEHLVARRYWNPQPYTKLLALYSKASLHASVKQKMQSLITNFFRDRREKMKAELLRLAG KYDSTTYAEKCINEGECVTYYDGIYDIYNPYPVVEEVLMNIM >gi|281305462|gb|ADEF01000031.1| GENE 2 1382 - 2845 1009 487 aa, chain - ## HITS:1 COG:no KEGG:BF2900 NR:ns ## KEGG: BF2900 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 486 1 485 485 210 31.0 1e-52 MAKKYQVVHMGNLASMSTGEANEHQRRFTEKMWENRQNRRKNNMDRSRFGLNFELLRGGK MVLLGSEKSIKQRIEERYKEAGIQDPNVERMERYKLKGEVYTGKPYRTICELILGGNADF MRDLAFGDQKVDMKKGADNSHLVLHPEIIKWAKYVYKALAKRYGEENIVSFVVHVDESSP HVHCCILPIYYDENKGRNRVMYRDTFGGEATVLDELHDYMAEVNAKWGLEHGEPVSVTDN RHIPREEYYAMLGHEIQECEEKKSKLESAIKGLGTMIHHLTTERDECTAEIEELEEQLAQ CQGDKSEIETLKARVSDLDARLADKRTKLMEADRKLKEANTRVRESVTNFENMEKANAIV QEELGKDVDSLFKTTFFDDAVDGVKTKLSNNPDLKLGDKAEVLNAMFYAGAEHMVDVVDK AKELFLAGINGAANAPASGSGGGGSTSDMPWRDKDEDLAKYLLRCLQASGRQVRAKHAKP KYKSRRS >gi|281305462|gb|ADEF01000031.1| GENE 3 2923 - 3294 163 123 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFTEGSNYSRHSLSENPQHTQFSDPAEHSARTDSRECFSNGSKTALSNATTLSTAATFSE RAETKSLLYKTSFRSEEHNPHFCEQEMNYALASVATSGVSSKLSVSVSLYETCICPQEHS GGT >gi|281305462|gb|ADEF01000031.1| GENE 4 3388 - 4218 437 276 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880656|ref|ZP_06289360.1| ## NR: gi|282880656|ref|ZP_06289360.1| hypothetical protein HMPREF9019_1782 [Prevotella timonensis CRIS 5C-B1] # 1 276 1 276 276 527 100.0 1e-148 MRKKRIFCLMLDEFQIQALSKYSNGIGRLACFEHLLLHAERQDTVHTKRGISYTVPKGCL DISEEELSVQWQCNRTTVHRMLKEWQGLGLITMKANNVTTIVSVTCLQSWYVGRDEGSFA KNDVFRYPNLFTDQPLEDFVPVRKQKPAATSKKTSSKGKASKASQSGATDSETNDVDGTE EATDSVVTSTSISLSYDDSYGQDRGVPTSPKDANAPVVGVPVENNGQNFKEDISNDDAYT HEGASTDSVHETSVVNPKPQDIYDDDNSGTDKAQQN >gi|281305462|gb|ADEF01000031.1| GENE 5 4261 - 4554 222 97 aa, chain - ## HITS:1 COG:no KEGG:RB2501_04950 NR:ns ## KEGG: RB2501_04950 # Name: not_defined # Def: putative excisionase # Organism: R.biformata # Pathway: not_defined # 18 97 4 83 93 71 50.0 9e-12 MYSISNIEKTENLIIQVSQLKHRVENLENVLRNGKDVLTLEEASLYTGISRSTLYKLTSA HEIPYYKPHGKLILFERKELLAWVRANRIPAKDENED >gi|281305462|gb|ADEF01000031.1| GENE 6 4665 - 5039 228 124 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880658|ref|ZP_06289362.1| ## NR: gi|282880658|ref|ZP_06289362.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 124 1 124 124 238 100.0 8e-62 MELNEIIKSGNDVMLVVSSNDLLRFADTIVQRALENHANEETQQRKEDEAEEKFLTRKEV KSIFDVCDSTLWSWHKHGLLCHRKFGRKCVYALSDIRRFMNDHVEKDTAAGYVKWHEVKA NIPD >gi|281305462|gb|ADEF01000031.1| GENE 7 5322 - 6161 638 279 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880659|ref|ZP_06289363.1| ## NR: gi|282880659|ref|ZP_06289363.1| hypothetical protein HMPREF9019_1785 [Prevotella timonensis CRIS 5C-B1] # 1 279 1 279 279 517 100.0 1e-145 MTEEEIYEELEITYGKPPRTTSEKNMIWLKGVLEAHIIEGEFNEDVPKPSLDALAMTLIA ITTYDIPMEELAAKKPTIKRTLLWFIVECHNHYDEIDEIMHQLMHKSYRGLKLFMITRML KIFKWLSMQEIPTKLMEVVLHPEHYDDISDGLHQLISPNKIESAVLYIICAIEDGLLPMD VSRSLMIKEFELTPNKSAYHRYFSKYFTYAADLNAQEKKWLETQKEKRKITLRANIGYTR KDDGSIKFLGHTLTVRNALLYLIAKLRRFLNLKRLMKES >gi|281305462|gb|ADEF01000031.1| GENE 8 6165 - 6779 355 204 aa, chain - ## HITS:1 COG:no KEGG:FMG_0666 NR:ns ## KEGG: FMG_0666 # Name: not_defined # Def: serine/threonine phosphatases # Organism: F.magna # Pathway: not_defined # 14 171 16 192 245 72 32.0 8e-12 MTTELFTKGYDSQNEDYCKVVELEGRSLIIMADGMGGLSLGAEAAECVCEGIAEYVSKNL ESDNLWQEAFKYADNKLHELSLANHINMGAAVTALIITETSCEVAWQGNVRLYLYRDNQL LQLTTDHVMNIGYGQKMLTRCLKGGGLRDDVPTKNIPLQTDDILFLCTDGFYNIHEQDLS SGNTSVPKEDTMNDDATCLTIKIN >gi|281305462|gb|ADEF01000031.1| GENE 9 6776 - 7642 473 288 aa, chain - ## HITS:1 COG:RSp0267 KEGG:ns NR:ns ## COG: RSp0267 COG4849 # Protein_GI_number: 17548488 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 19 268 18 264 287 99 28.0 1e-20 MEYKIDKAKLANDPLYETLAALQKSLEQLNLQLYIVGACARDIAMIVLNVPASARRTIDI DVAIALDNWEMFDKVLELLQQNYFKKDPYAKQKFYYKGEDGTNDYEVDVVPFGPLANNEV IGWPPEGNPEMSVRCFEDVMNDADTIIVNENVRFCIASLSGQFLIKLDAWIDRHLKTDKD ARDMFYIIDNFYWTSIVDKFPPPERVTNSDDPAFDDFVAGAQWIASELRSLLSDEHRTYY VDFINSELSLEDNSKLVQHLVTASNNSNVRNYSNIRLALQNVANILSA >gi|281305462|gb|ADEF01000031.1| GENE 10 7632 - 8621 566 329 aa, chain - ## HITS:1 COG:RSp0266 KEGG:ns NR:ns ## COG: RSp0266 COG4861 # Protein_GI_number: 17548487 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Ralstonia solanacearum # 76 321 102 359 370 93 26.0 5e-19 MPSIKEKELIAQACINLSGKLGVSGISSAMSRNRILDSTISVADTTFGVIAKSVVMRSNM SFTIQQAKDAHEATNLPILLVLGYVQPSIMQTMYDNGISVIDYAGNCMIKHGLLCVNVSG QKNTYRNDTKSHALSEGAIKLIYRFLSDKSFVGKAYRTISSETGLSLGSIKNTIEELTNR QFVMHTDKGRKLINEDKLLELWVQAYNQTIRPKLMLRRMSFRTDEMRSKWQKTNLPEGML WGGDCGANLTDGYLVPGSFDIYTSKPSAMLMTTGMVMPNENGEITLYQKFWNDDNVTKVA PKLIIYADLMNSGDSRQIEAAQRLIKNGI >gi|281305462|gb|ADEF01000031.1| GENE 11 9463 - 9789 108 108 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAFLTIGGTQISQSDVALYADGSCMRAIAQIWEPAIIVVMNVCLRITPIWTNSTKSARVM IKAITQKGISVSKSPSPDAKHRGIFAVCCSHSSQHSFLSPKYSKPLVW >gi|281305462|gb|ADEF01000031.1| GENE 12 9632 - 9994 269 120 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|281424558|ref|ZP_06255471.1| ## NR: gi|281424558|ref|ZP_06255471.1| conserved hypothetical protein [Prevotella oris F0302] # 1 120 1 118 135 185 77.0 9e-46 MSRPIIGAQIFKDMIIDKGLSTAQKILNQLTIAVKGSEQEYYTDKELKQFAQAFKSKWAE SMSNDEVADGFLDYWWNTDKPVRRCSICGRLMHEGYCSDMGASYYCSNECLLTDYSNMDE >gi|281305462|gb|ADEF01000031.1| GENE 13 10011 - 10340 397 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880663|ref|ZP_06289367.1| ## NR: gi|282880663|ref|ZP_06289367.1| hypothetical protein HMPREF9019_1789 [Prevotella timonensis CRIS 5C-B1] # 1 109 1 109 109 203 100.0 3e-51 MAINMTNQEMVLTSLGFFKNDYKLDNFRSNFGYDWTDEDLNEAIEAAGYDLTSVRNCLME ILWLKVVDEFENKGCEREMFDCWVNGSLDTHFYFKQTEVNAINEIEKLA >gi|281305462|gb|ADEF01000031.1| GENE 14 10353 - 10700 267 115 aa, chain - ## HITS:1 COG:no KEGG:BF2919 NR:ns ## KEGG: BF2919 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 12 115 5 108 109 115 52.0 7e-25 MESIKQDTEVKAWKFVKWDVEPLSKLSNSKVYRLRAKLNSGHKMNREEKNWLAVAVNTNT YYRTAVPLMGYCFNFFDVLKRYIVNQYGQWSEYYAPDKTSLRAYMCGRVHQIVEI >gi|281305462|gb|ADEF01000031.1| GENE 15 11079 - 11303 243 74 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880665|ref|ZP_06289369.1| ## NR: gi|282880665|ref|ZP_06289369.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 74 1 74 74 122 100.0 9e-27 MTKVIHVHLIQRHKSYYFGSIPAIYSTLTADEIGIRQSSLERVGLSKGGVVLNKKAIISA GELIRSKIKQHKGK Prediction of potential genes in microbial genomes Time: Sat May 28 07:02:17 2011 Seq name: gi|281305450|gb|ADEF01000032.1| Prevotella timonensis CRIS 5C-B1 contig00074, whole genome shotgun sequence Length of sequence - 12456 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 7, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 286 212 ## PRU_0424 aldose 1-epimerase (EC:5.1.3.3) - Prom 323 - 382 5.7 - Term 318 - 370 11.0 2 2 Tu 1 . - CDS 384 - 1544 1456 ## COG0153 Galactokinase - Prom 1569 - 1628 3.5 - Term 1582 - 1632 11.0 3 3 Op 1 . - CDS 1645 - 2928 1087 ## COG0738 Fucose permease - Prom 2960 - 3019 7.9 4 3 Op 2 . - CDS 3174 - 4265 373 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase - Prom 4293 - 4352 6.3 5 4 Op 1 . - CDS 4378 - 5685 935 ## COG0285 Folylpolyglutamate synthase 6 4 Op 2 5/0.000 - CDS 5738 - 6910 1114 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 7 4 Op 3 . - CDS 6955 - 7566 748 ## COG0576 Molecular chaperone GrpE (heat shock protein) - Prom 7600 - 7659 3.8 - Term 7595 - 7637 2.0 8 5 Tu 1 . - CDS 7680 - 9290 1915 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 9318 - 9377 6.9 + Prom 9336 - 9395 6.2 9 6 Op 1 . + CDS 9417 - 10364 210 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 10 6 Op 2 . + CDS 10378 - 10533 108 ## + Prom 10769 - 10828 10.7 11 7 Tu 1 . + CDS 10848 - 11879 653 ## gi|282880678|ref|ZP_06289381.1| hypothetical protein HMPREF9019_1884 + Term 11890 - 11957 2.9 Predicted protein(s) >gi|281305450|gb|ADEF01000032.1| GENE 1 1 - 286 212 95 aa, chain - ## HITS:1 COG:no KEGG:PRU_0424 NR:ns ## KEGG: PRU_0424 # Name: galM_1 # Def: aldose 1-epimerase (EC:5.1.3.3) # Organism: P.ruminicola # Pathway: Glycolysis / Gluconeogenesis [PATH:pru00010]; Biosynthesis of secondary metabolites [PATH:pru01110] # 15 95 6 87 384 108 64.0 6e-23 MKLKSKIFLTTAFVATLFAACSSGNDKNLTVSGLNPAKFDTIIHEKPVKLFVIKNSHDME VCVTNFGARIVSICVPNKADIATDVVLGFDNIAQY >gi|281305450|gb|ADEF01000032.1| GENE 2 384 - 1544 1456 386 aa, chain - ## HITS:1 COG:CAC2959 KEGG:ns NR:ns ## COG: CAC2959 COG0153 # Protein_GI_number: 15896212 # Func_class: G Carbohydrate transport and metabolism # Function: Galactokinase # Organism: Clostridium acetobutylicum # 3 385 4 388 389 247 37.0 3e-65 MDIDHVRSRFIKHFDGKTGNIYFSPGRINLIGEHTDYNGGFVFPGAVDKGIMAEIRPNGS NTIMCYAIDLKDRVEFKVDDPQGPRTSWARYIYGIVQEMKKLGVEVKGFNTAFSGDVPLG AGMSSSAALESCYAFGLNDLFGDNKVSKWDMVLAGQATEHNYVGVNCGIMDQFASVFGQE GKLMRLDCRSHEFEYFPFNPKGYRLMLVNSCVKHELVGSPYNDRRKSCENVVKHIAAKHP EGKFETLRDCTWEQLEEVKDEVGAEDYSRARFVLGEKDRVLAVCDALQAGDYETVGKKMY ETHEGLSKDYEVSCEELDFLNEVAKENKVTGSRIMGGGFGGCTINLVKDEIHDKFVADVT EKYAAKFGKKPEIYDVVISQGSHKVC >gi|281305450|gb|ADEF01000032.1| GENE 3 1645 - 2928 1087 427 aa, chain - ## HITS:1 COG:BMEII1053 KEGG:ns NR:ns ## COG: BMEII1053 COG0738 # Protein_GI_number: 17989398 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose permease # Organism: Brucella melitensis # 13 419 24 412 412 124 29.0 4e-28 MEKQTNKNGVIVAIISMMFLFAMISFVTNLAAPFGNIWGKTYSWAGMVGNLMNFLAYLFM GIPAGKMLVKYGYKKTALIAMAVGFIGLFIQYLSSIFGGSSEMFTIQENPVMLNFIIYLI GAFICGFCVCMLNTVVNPMLNLLGGGGNRGNQLIQTGGTLNSLTATLTPFFVGVLIGEVT DKTSMNDVTPLLWVAMAVFAVTFLIIAFVTIPEPQSTASGVTFEHSPWNFRHFVLGVIAI FFYVGIEVGVPAELNFYIMKLGFPGAAAIAGGIVAIYWLLMLVGRFISSFVSGKISSRAQ LISTSALGIILLVIAILLPESSSVTFHGVNVPVKCFFIIACGICTSIMWGCIFNLATEGL GKYTAPASGIFMTMVVGGGVMPFIQDQIATSLNDYISSYWLIVAMLGYLLYYGLVGSKNV NKDIPVD >gi|281305450|gb|ADEF01000032.1| GENE 4 3174 - 4265 373 363 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 22 362 12 345 345 148 26 2e-35 MTNTSDANNCCGLKREDFQTTIDGKKTDLYVLKNQNGNEVAITNYGGAVVAIMVPDQQGK LANIIQGHDNIQAVIDSPEPYLSTLIGRYGNRIAKGRFQLNGKEYNLPINNGPNSLHGGK KGFNAKVWEAQQMNEQTLVLKYVSPYGEEGFTGEVRTIVEYTFTDDNELVIEYLAFTNKK TIINLTHHGFFSLSGIANPTPTVEEEICEINADYYIPIDETSIPTGEIRFVKGTPFDFRQ PKAIGKDIEAENEQIKNGAGYDHCFVLNKKEEGELSFAARLTDPKSGRVMEVYTTEPGVQ LYTDNWADGYQGQHGATFPRRSAVCFEAQHFPDSPNHPYFPSVVLEPGQEYKQKTVYKFS VKS >gi|281305450|gb|ADEF01000032.1| GENE 5 4378 - 5685 935 435 aa, chain - ## HITS:1 COG:CAC2398 KEGG:ns NR:ns ## COG: CAC2398 COG0285 # Protein_GI_number: 15895664 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Clostridium acetobutylicum # 1 434 1 431 431 229 32.0 6e-60 MNYQETIDYLFHAAPVFEKVGASAYKEGLSNTIALDEHFGHPHRQYRTIHVAGTNGKGSC SHTLAAILQAEGYRVGLYTSPHLVDFRERIRINGVCIDEETVIKFVEEEKDFFEPLHPSF FELTTALAFKYFADQQVDIAVIEVGLGGRLDCTNIITPELSIITNISFDHTQFLGNTLAK IAGEKAGIIKPHVPVVVGETLPETRPVFEKKAQQEHAPIIFAEDAPEVLHSTYDVSSQQR IYKTLSFGELRGDLTGCYQDKNTNTELAAVNVLRQMHILKRPESLAQGLKNVMQTTGLMG RWQCLQKQTSTQPAIYCDTGHNVAGWNYLSQQLQQQKYKTLRIVFGMVDDKDLQTIMKML PTDAVYYWTQPSTERAFPVEEIAKAGATNQLQGQQYRTVREAYSTCLKQANPKDFVFVGG SSYIVADLLTFLERK >gi|281305450|gb|ADEF01000032.1| GENE 6 5738 - 6910 1114 390 aa, chain - ## HITS:1 COG:RSc2634 KEGG:ns NR:ns ## COG: RSc2634 COG0484 # Protein_GI_number: 17547353 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Ralstonia solanacearum # 1 389 1 379 380 289 44.0 6e-78 MAKRDYYEVLGVNKDASEDEIKKAYRKLAIKYHPDKNPGSKEAEEKFKEAAEAYDVLHDP KKRQQYDQFGFNAPGGGGFEGFSGGGFSMDDIFSMFGDVFGGHSGFSGFGGFGGGTAGER QQPQYRGADLRLKVKLTLQEISTGVTKKFKVKKDIACTHCNGSGAEKGSGTQTCPTCHGQ GVVVKTVRTMLGMMQTQSECPTCHGAGTVIKNKCQHCHGTGVVKGEEIVEIKIPAGVAEG MVVNVPGKGNAGPRNGITGNIQVLIEEQPNDTFIRDGQDIIYNLLLDFPTAALGGEVEIP TLENTRVRIKIEAGTQPGKTLRLRGKGLPAVQGYGSGRGDLVVNISIYVPKTLSRDEKET IERLRTSDNFKGDYATKQSIFKKFRNYFNE >gi|281305450|gb|ADEF01000032.1| GENE 7 6955 - 7566 748 203 aa, chain - ## HITS:1 COG:SMc01142 KEGG:ns NR:ns ## COG: SMc01142 COG0576 # Protein_GI_number: 15964131 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Sinorhizobium meliloti # 31 203 19 193 208 81 35.0 9e-16 MSKRNKHKEQEAEKKLDTQHEEMDAGTVTDEKKVEEQAAATDNQPEEQGEAPTTDPLAEA QAQIEELKDRYLRTVAEFENFKRRTQKEKAELIFNGSEKTVSAILPILDDMERAAANANK TDDIHALEEGWELILKKLLKTLEGLGVKKIETQDKAFDVDFHEAVAMVPNVEDDKKGKVI DCVQTGYTLNEKVIRHAKVAVGQ >gi|281305450|gb|ADEF01000032.1| GENE 8 7680 - 9290 1915 536 aa, chain - ## HITS:1 COG:BS_ykpA KEGG:ns NR:ns ## COG: BS_ykpA COG0488 # Protein_GI_number: 16078507 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus subtilis # 1 536 1 538 540 647 58.0 0 MITVSNLAIQFGKRVLYKDVNIKFTHGNIYGIIGANGAGKSTLLKAISGELEPTKGSVEL GPGERLSVLEQDHFKYDEYLVMDTVLMGHEPLWKNMKEREALYSKPEMSEEDGTRAADLE LKFAEMNGWEAESDAAQLLQHLGIGEALHSKTMSELSNNEKVRVMLAKALFGNPENLLLD EPTNDLDLDSVQWLEEYLSNIEQTVLVVSHDRHFLDAVSTQTVDIDFGKVTVFSGNYSFW YESSQLALRQAQNQKMKAEEKRKQLEEFIRRFSANVAKSKQTTSRKKMLERLNVEEIRPS SRKYPGIIFQMEREPGNQILQVEGLKALDTDGSILFDNVSFTVEKDEKVVFLSHNPKAMT ALFEIINGHREPDAGTYNWGVTITTAYLPLDNAEFFESDMNLVDWLSQFGTGNEVVMKGY LGRMLFSGEEVLKKVNVLSGGEKMRCMIARMQLKNANCLILDTPTNHLDLESIQAFNNNL VTFKGNILFSSHDHEFIQTVANRIIELTPKGTIDKLMNYDEYIYDDQIKELKEKMY >gi|281305450|gb|ADEF01000032.1| GENE 9 9417 - 10364 210 315 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 44 285 39 279 285 85 30 2e-16 MNSNFSNKDYQCYVVEETDTLLNWLLNHVTHLSKSKLKATLAGRGIIVNGKQITQFDYPV TPGTKIAISKSKKNTLFKSKYVKIVYEDRYLVVIEKQAGILSMAAGHASLNVKKVLDSYF KQSKQKCTAHVVHRLDRDTSGLMIYAKDIQTAQLLEHDWHHNVYDRRYVAVVSGEMEQDE GTIANWLKDNRAYITYSSPEDNGGKFAVTHFHTLNRTTEHSLVEYRLETGRKNQIRVHSA DMGHPVCGDHKYGNGDNPIGRLCLHAYVLCFYHPVTHRPMEFETPIPPAFAHLFKVSHKN QPYSGRTAHGFNEVE >gi|281305450|gb|ADEF01000032.1| GENE 10 10378 - 10533 108 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFSNISFYIYLLIAIIVGAFLLKKITSCLLKIVLFLVFVALAVWLYYAFSA >gi|281305450|gb|ADEF01000032.1| GENE 11 10848 - 11879 653 343 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880678|ref|ZP_06289381.1| ## NR: gi|282880678|ref|ZP_06289381.1| hypothetical protein HMPREF9019_1884 [Prevotella timonensis CRIS 5C-B1] # 1 343 1 343 343 667 100.0 0 MNTKLQLFCAILLCFAIKWNAVFAAGHDIGIQKATTKEIKSDPVNVVYDAVATRSTTNSS EITELELSLVKLLLTHEGLGYPKANAKSRIALKNICDAPKKYTKDQLLQARQDFLNDTDV EMPVNGKRYTIKFYGIGQDVFLLDYSGGKVSTRKTTQGQLPDESACFTAHVLKNGRVAFE TVDKKWLSYPTKTPGPSWLKDYAPNGVTDKLDEAANGLELQKAGKGEHVDLGNPLNLFGK FFIKSKRGTDANSYAEVQGYWLLNTKNNTFDGAGDPYYSEELSSVMLIEPVTKTTDIRQS ERTLKRTSENKIYTLSGQRIFVKKLSDLPRGIYIVNGKKLLVQ Prediction of potential genes in microbial genomes Time: Sat May 28 07:02:51 2011 Seq name: gi|281305405|gb|ADEF01000033.1| Prevotella timonensis CRIS 5C-B1 contig00065, whole genome shotgun sequence Length of sequence - 59250 bp Number of predicted genes - 48, with homology - 43 Number of transcription units - 28, operones - 13 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 295 - 354 7.6 1 1 Tu 1 . + CDS 425 - 1129 751 ## BVU_2192 hypothetical protein + Term 1146 - 1196 6.0 + Prom 1234 - 1293 4.2 2 2 Op 1 1/0.000 + CDS 1355 - 3592 1709 ## COG4771 Outer membrane receptor for ferrienterochelin and colicins 3 2 Op 2 . + CDS 3608 - 7780 2920 ## COG1429 Cobalamin biosynthesis protein CobN and related Mg-chelatases + Prom 7863 - 7922 7.2 4 3 Op 1 . + CDS 7945 - 8628 487 ## BVU_2195 hypothetical protein 5 3 Op 2 4/0.000 + CDS 8688 - 9290 535 ## COG0811 Biopolymer transport proteins 6 3 Op 3 . + CDS 9287 - 9574 329 ## COG4744 Uncharacterized conserved protein + Term 9695 - 9736 -0.6 - Term 9638 - 9704 6.6 7 4 Op 1 . - CDS 9783 - 12641 2304 ## PRU_1650 hypothetical protein 8 4 Op 2 . - CDS 12638 - 15868 2420 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 9 4 Op 3 . - CDS 15893 - 17971 772 ## PRU_1648 hypothetical protein 10 4 Op 4 . - CDS 17950 - 18129 134 ## - Prom 18227 - 18286 3.6 - Term 18175 - 18217 7.2 11 5 Op 1 . - CDS 18309 - 18947 358 ## PROTEIN SUPPORTED gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 12 5 Op 2 . - CDS 18995 - 20416 1127 ## COG0457 FOG: TPR repeat 13 5 Op 3 . - CDS 20452 - 22167 1506 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 22263 - 22322 7.7 + Prom 22323 - 22382 6.0 14 6 Tu 1 . + CDS 22423 - 22536 105 ## 15 7 Tu 1 . - CDS 22722 - 23768 733 ## COG1559 Predicted periplasmic solute-binding protein - Prom 23829 - 23888 7.0 + Prom 24155 - 24214 7.5 16 8 Op 1 . + CDS 24336 - 24518 150 ## gi|282880694|ref|ZP_06289396.1| hypothetical protein HMPREF9019_1814 17 8 Op 2 . + CDS 24561 - 25214 587 ## COG0546 Predicted phosphatases + Term 25232 - 25283 13.5 18 9 Tu 1 . - CDS 25283 - 26620 1309 ## COG1538 Outer membrane protein 19 10 Tu 1 . + CDS 26842 - 26988 82 ## + Term 27214 - 27250 2.2 20 11 Tu 1 . + CDS 27499 - 28098 575 ## COG0307 Riboflavin synthase alpha chain + Prom 28118 - 28177 2.9 21 12 Tu 1 . + CDS 28251 - 29948 1633 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Prom 29969 - 30028 1.8 22 13 Op 1 . + CDS 30059 - 30910 365 ## PRU_2416 hypothetical protein 23 13 Op 2 . + CDS 30911 - 33649 1260 ## ZPR_4162 hypothetical protein + Term 33718 - 33770 7.2 24 14 Tu 1 . - CDS 33945 - 34481 545 ## LAR_1478 hypothetical protein - Prom 34599 - 34658 3.6 + Prom 34429 - 34488 6.9 25 15 Tu 1 . + CDS 34636 - 36147 1191 ## COG1649 Uncharacterized protein conserved in bacteria + Term 36158 - 36198 7.7 - Term 36144 - 36188 10.9 26 16 Tu 1 . - CDS 36190 - 36639 473 ## PRU_0802 hypothetical protein - Prom 36784 - 36843 6.1 + Prom 36748 - 36807 7.2 27 17 Op 1 . + CDS 36842 - 37345 473 ## PRU_0797 hypothetical protein 28 17 Op 2 . + CDS 37348 - 37827 522 ## COG0691 tmRNA-binding protein + Prom 38518 - 38577 6.7 29 18 Op 1 . + CDS 38618 - 39481 883 ## COG0024 Methionine aminopeptidase + Prom 39483 - 39542 4.5 30 18 Op 2 . + CDS 39566 - 40591 625 ## PROTEIN SUPPORTED gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase 31 18 Op 3 . + CDS 40672 - 41190 530 ## COG1546 Uncharacterized protein (competence- and mitomycin-induced) + Term 41279 - 41324 -0.2 + Prom 41254 - 41313 6.6 32 19 Op 1 . + CDS 41361 - 41624 378 ## PROTEIN SUPPORTED gi|150005786|ref|YP_001300530.1| 50S ribosomal protein L28 33 19 Op 2 . + CDS 41630 - 41818 294 ## PROTEIN SUPPORTED gi|150005787|ref|YP_001300531.1| 50S ribosomal protein L33 34 19 Op 3 . + CDS 41834 - 41992 227 ## PRU_0750 hypothetical protein + Term 42065 - 42101 5.0 + Prom 42036 - 42095 3.7 35 20 Op 1 . + CDS 42167 - 43471 741 ## COG0534 Na+-driven multidrug efflux pump 36 20 Op 2 . + CDS 43520 - 44896 1138 ## COG1322 Uncharacterized protein conserved in bacteria 37 20 Op 3 . + CDS 44893 - 45396 279 ## COG0394 Protein-tyrosine-phosphatase + Prom 45398 - 45457 6.2 38 21 Op 1 . + CDS 45477 - 48197 2613 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase + Prom 48201 - 48260 1.8 39 21 Op 2 . + CDS 48281 - 48754 354 ## gi|282878915|ref|ZP_06287679.1| hypothetical protein HMPREF0650_0585 + Term 48929 - 48972 8.0 40 22 Tu 1 . - CDS 49055 - 49849 482 ## COG1397 ADP-ribosylglycohydrolase - Prom 49873 - 49932 2.8 41 23 Op 1 . - CDS 49961 - 52510 1474 ## ZPR_4162 hypothetical protein 42 23 Op 2 . - CDS 52551 - 53381 512 ## PRU_2416 hypothetical protein - Prom 53521 - 53580 7.3 + Prom 53142 - 53201 5.1 43 24 Tu 1 . + CDS 53284 - 53475 92 ## 44 25 Tu 1 . - CDS 53710 - 53925 200 ## PROTEIN SUPPORTED gi|149371717|ref|ZP_01891133.1| hypothetical protein SCB49_09940 - Prom 54137 - 54196 7.4 + Prom 54037 - 54096 7.5 45 26 Op 1 . + CDS 54156 - 54632 304 ## Slin_0312 hypothetical protein 46 26 Op 2 . + CDS 54622 - 54828 195 ## COG1476 Predicted transcriptional regulators + Term 54953 - 55001 12.6 - TRNA 54993 - 55068 85.0 # Lys CTT 0 0 - TRNA 55081 - 55153 84.4 # Lys CTT 0 0 - Term 55110 - 55144 -0.5 47 27 Tu 1 . - CDS 55262 - 57688 1543 ## COG0370 Fe2+ transport system protein B - Prom 57715 - 57774 3.2 - Term 58459 - 58506 -0.7 48 28 Tu 1 . - CDS 58522 - 58779 84 ## - Prom 58810 - 58869 2.9 Predicted protein(s) >gi|281305405|gb|ADEF01000033.1| GENE 1 425 - 1129 751 234 aa, chain + ## HITS:1 COG:no KEGG:BVU_2192 NR:ns ## KEGG: BVU_2192 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 70 230 59 216 220 77 31.0 3e-13 MTTALFLGLTAMVFTWTSCDKSEDLSQKKEKEEQSVICKHADILLQEKQMTNYDKWVYID LESGKTETQTDYRAWVYGMMNRQTGEMDQITKEIPERANNEPKKWHIAFHLYDPMTNGGE VMIAGKDTTSLDQITELPKGGTWTADKPVWILVDMAGMMQMPPTMGYSKGFSNPNLHKYM RRAGMGQYEMANKGRIFIVKFKDGSFAAIKFTDITDATGKKKQVSFDYKFVKKN >gi|281305405|gb|ADEF01000033.1| GENE 2 1355 - 3592 1709 745 aa, chain + ## HITS:1 COG:VC0475 KEGG:ns NR:ns ## COG: VC0475 COG4771 # Protein_GI_number: 15640502 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor for ferrienterochelin and colicins # Organism: Vibrio cholerae # 106 620 29 545 652 132 25.0 3e-30 MNKIFLLCLFAILQFVTTSAKADAASSRYTIRGTVTDECNRPLPGALIAVSGTTIKQGTN SKGMFEITVNENRNYDITVSYVGFQPKHVIARPGQDASITLFPSRTNLDEVVVTGTRSDR PLKDMPVLTRVISRREIETINAIDLTTLLQTALPGLQFSYNDMSQATEITYQGLGGKAVL FLLDGERISGEGGANNIDYGRFNVNDIERIEIVRGAAATLYDSRAIGGVINIITRKGFRP VTARVSTRYAGRNGEMYSVSAGVNRKNFSALTSFGYRKRESYIIADSTGKVRETRLSNGV VKRDTLPAYQSTIHGYSILDVSQKLSYVFNDQLRADFRGSYYNNRRPSNEYKKLHQVYTD LTLSGKLSYIPSSNQNIELTVIRDDYQKTNVFDKVDLKEHVYRNINTTGRLYYSGTLGKH TISAGVDYVREDLKHYFLPDTAQMHTSQFSCCLQEDWKPWRQLNIVAGVRADKVTRYKLH FTPKLSVMYRPWAFLTARAGYSQGYRAPNLKELYQEWTMGGLIQMYGNPNLKPEVGSQLS ASVEYDKNGLNLSLSSYYNNYLNKIIYAYVHPEKNMDMRWENADSVRTFGVEATANYKFV WGLQLAGAYTYITDYNKKNGYNLSWLRPHSAKLSAVYSKKWGKTTETLSLYTNWVSALST YTYKSNKDEQTGKVVESFTREDFDARTICSLNLRSQLPHGITIGVMIDNLLNYKDKAVDS GLQYPQNGRTYVATISINIADMLKL >gi|281305405|gb|ADEF01000033.1| GENE 3 3608 - 7780 2920 1390 aa, chain + ## HITS:1 COG:alr1689 KEGG:ns NR:ns ## COG: alr1689 COG1429 # Protein_GI_number: 17229181 # Func_class: H Coenzyme transport and metabolism # Function: Cobalamin biosynthesis protein CobN and related Mg-chelatases # Organism: Nostoc sp. PCC 7120 # 285 1278 312 1278 1302 347 25.0 1e-94 MKKKIIIAAITIIVIILATWGWNHWFSRTRIAFVNYQAIELAQISRANDNGMIKIENLSA ENLDELNKYDMVFVQAMGLKLTGEQRKLITTAAQKGVPILSTMITTPENDFTTIDQVSAD TLRLYLGNGGRQNYRNLALYVRKYIDAKFFKAPTPQPVVEHILGLLHHRPKTEDKAADDL QFNSVNEYNAYLKKQGLWHEGAPAIVVMGPMGEPTSLIARLEQTGNNVYPVNDIRKFIEE GHADSIPLRAVINMAHGRVGDNLVAFLQQKNIPLFAPLNVNQPEKDWRNDKQGMMGGFLS QSVTMPEIDGAIRPFALFAHYKGKDGLDYVDAIPDRLNTFVKTVNNYIRLKNIPNSKKRV AIYYYKGPGQNALTASGMDVCSSLFNLLTTMKQQGYNVQGLPSSAEELEKLIQQQGAVLG TYAKGAITHFIHTGHPALVNKEEYDKWVKASIVGEKYKEVVKKNGEFPGNYLATDKGELA IPRIQLGNIVLMPQLAVSTEGNSFKIVHGTDAAPSHAFIASYLWMQHAFKADMLVHFGTH GSMEFTPKKQIALSNEDWPDRLVGAIPHIYIYTVGNVGEGVIAKRRSYACLQTYLTQPYM KNDVRTMYKALLDKMDVYHTKVAKKLPGITETALQVKAMVVKMGIHRDLQLDANLKRPYN EEQMQQVDNFIEELATEKIGGHLYTMGVPYDTQGLHSTVMAMCADPIAYARFAVDKQKGR ASDVMMKQRSLFVQHYLYPAQKLVDKLLANPSLGNPKMVCQVLGIAPAELQKAHHLCEAL NAPTSMMAMMQGMSKKSPMAKGMKKNMNSMKGNMPKGMGMDGMRMQKPSFSSHEKDLAFA VIEAERTIMNVAKYRKLLIQSPTMELKSILNAMNGGYTSPSPGGDPVTNPNTLPTGRNMY SINAETTPSEAAWEQGKQLAENTIALYRQHHHDSIPRKVSFTLWSSEFIETQGASIAQIL YLLGVEPVRDFFGRISDIKLIPSKVLGRPRIDVVVQTSGQLRDLAASRLFLINRAVEMAA AAHDDKYENMVSEGVKETERVLTEKGVSPKEARSMAARRVFGGVNGSYGTNIQSMVMSSD QWENRSEIADTYLNNMGAFYGDDKEWEDFKQYAFEAALTRTDVIVQPRQSNLWGALSLDH VYEFMGGLNVAVTKATGKEPDAYISDMRNHYNMRMQDLKEAVGIESRTTIFNPAYIKEHI KSGKEGADEFAKTIQNTFGWNVMRTNVIDQQFWNKIYQVYIKDEYKVGMQKYFEQKNPAA LEEITAVMLEGARKGMWKPTHEQIKTLASWHMDLVNRFKPSCSGFVCNNNKLRQFIAKEG ADNAVQQQQYLRNINQIREKATEGKQGMIMKKETLSDNQNTTSDSVNGTVIIIVVLIAII AVAFIVRRNR >gi|281305405|gb|ADEF01000033.1| GENE 4 7945 - 8628 487 227 aa, chain + ## HITS:1 COG:no KEGG:BVU_2195 NR:ns ## KEGG: BVU_2195 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 227 1 226 229 144 41.0 3e-33 MVTVIAILMLLVCFNFLLKQTFGTWKGIAVYTMLIAVFTISTWKIAINQSRTHIAEWLAS ETIMQNMAVILSVDIIVQLLFCMVAAREKTKMPQAATFRQKIYYAILQWCPGFAIFPVVF AMLVECIFGLPGLSFSLIAYVLAAVFVVSIPLLTFLLRRLLGDRDVRLEMLFLSNLIVAM IAVVATVRVSTPQNSNSPVNWFATAGVALLLALGVFLGALIRYIKIK >gi|281305405|gb|ADEF01000033.1| GENE 5 8688 - 9290 535 200 aa, chain + ## HITS:1 COG:MA4426 KEGG:ns NR:ns ## COG: MA4426 COG0811 # Protein_GI_number: 20093212 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Biopolymer transport proteins # Organism: Methanosarcina acetivorans str.C2A # 8 196 11 206 273 132 38.0 6e-31 MTYISDFLFWITTGLLIPVIVILLLLFIRALLLLGTFFGQYLGMRHTLRVIEKHFDTLTV DGLPSLKEQLPTQRTSPLLVYSHRILDAKGSEQHIERLLSQFEIDYNKEIGAPALLAKLG PQLGLMGTLIPMGPALVGLSTGDIASMAYNMQVAFATTVVGLFSAGVGMITMQVKRRWFM QQRTQLEFLADLILENKGRV >gi|281305405|gb|ADEF01000033.1| GENE 6 9287 - 9574 329 95 aa, chain + ## HITS:1 COG:MA4425 KEGG:ns NR:ns ## COG: MA4425 COG4744 # Protein_GI_number: 20093211 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 1 77 1 82 123 83 57.0 7e-17 MRKRRRYASSSNDEDFNPMGVVGNLFDVAMVFAVALMVALVTRYKMPEMFSSQDFTMVKN PGKENMEIITKKGKKIERYTPSNDQSNADGTKGKK >gi|281305405|gb|ADEF01000033.1| GENE 7 9783 - 12641 2304 952 aa, chain - ## HITS:1 COG:no KEGG:PRU_1650 NR:ns ## KEGG: PRU_1650 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 4 949 3 877 879 865 48.0 0 MKYSFLEYVAKDLLEKFGTNLSHIAVVFPNKRASLFLNKYLAQLSDRPLWSPSYLTISDL FRQHSTLTVGDPIKLICDLHKSFITCTGREDTLDVFYAWGELLLADYDDIDKNLADADKV FANLQNIHELDDISYLSEHQKQILQKFFSNFDENHHTELKRRFIELWSHLSDIYHHFNEK LSLQGLAYEGALYRNVVSDKNLSFEFDQYIFVGFNVLQQVEQELFRHLKSMGKAKFYWDF DDYYMSDEKQEASHFIRQYLDVFPNELDCHNADIYQQFKQPKQITYLSAPTETIQARYIS EWLQHNGRMEAGIKTAIVMCDESILQTVIHCIPPEVSKVNITTGYPLAQSPVASLIHQLL KLQLSSYAHNGKYRLTEVKRMLSHPYIKYLSENAPELMANLEENKHYFPTRKELSVDAGL TLVFKELVDDSTNLYLTEWILEILQLIGKNGRDSEDAFFQESVFRMYTLMNRLHELIHSG DLRIQLTTYEKLILQLIQNTSIPFHGEPAEGIQIMGVLETRNLDFDHILILSCNEGNMPK GVNDVSFIPYSIREAYGLTTVKHKVAIYAYYFHRLLQRASDITLTYNNSTEGSHKSEMSR FMLQMLVESGHPIQKIAMLSGQEIKHHEAHPIEKKEMVMEVLYNMNQISPTAINRYMRCQ LQFYYNTIAKLYEPEPDNDIDNRMFGNIFHRSAELIYTSLQHESKWIEPTELNKLRTKSQ LLERFVDQAFYEEIYKSKDKVRPIEYNGLQLINRKVIIDYLKRLLKIDEALAPFRILSLE ERVNTTISFETAQGLKTITVGGIIDRLDEVTDPDGTHRIRVVDYKTGRPATSVPTDVEDI FSDDNLTEKHKDYYLQTFLYANIVRQHQELNPHGLPVSPALLFIQRNPGDDFDPTLLLSK EKVSDIGTYSSDFSKHLQQVLTDMYDSSHPFTPTQDNKRCTYCPYKRICGRN >gi|281305405|gb|ADEF01000033.1| GENE 8 12638 - 15868 2420 1076 aa, chain - ## HITS:1 COG:HP1553 KEGG:ns NR:ns ## COG: HP1553 COG1074 # Protein_GI_number: 15646160 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Helicobacter pylori 26695 # 13 1075 11 943 945 123 22.0 2e-27 MNTQQPSSLTISKASAGSGKTFKLATEYIKIVIDNPYAYRNILAVTFTNKATEEMKIRIL SQLYGIAHGLSDSESYLQEVKKALDLSDKQISERAEKALDLLLHNYSYFRVETIDSFFQS VLRNLARELDLTANLRIELNDKEIQEKAVDQLIEELHPKQQLLGWILDFIEQKIADDKSW NVIGLIKDFGNNIFQDTYKDHQSELTTKLNQKGFFPQYVQQLYAIKEKTIKELKDIPQEF TSLLTKYNACIDDLSRKSGGPASYFLKMSKGTFDSKMLINSYVQKALESPDGWLTKTNLK DPRLYQLATELTQLLENAEKKRRAMIKPYRTADLILKNLNQLRLLSSIENKVRELNDEGN NFLLSDTQTLLHELIDQNDSPFIFEKIGTQLSHIMIDEFQDTSTVQWKNFKILLQETMSH QDTNSLIVGDVKQSIYRWRSGDWRLLNNIEQEFAPSHQLKIEPLDTNYRSEHHIVNFNNH FFEIAAQQEYEELVASQTQGAEQMQKAYADVVQKIHKSKDKHGCVRIKLFPKEQYNETTI DEIIHTIQLLLDNGAKENSIAILVRNKANIHDIADVLMQAMPHIKLVSDEAFRLDSSSAV NILVDALHCLTHPEDQLTVANLAKTYQTQVLNHDLGDDDLLIQGKDIWDFLPKQYVLEAK ALLSLPAMDLVERLYALFDLSSLKNQSAYVCAFYDVLSQYISDNIAEIDSFINQWNETLH EKTIQSDGIDGIRMLTIHKSKGLEFDHVIIPFCDWKLEKEKTLWCKTDVAPFNELPVIPI TFNEGKMQESYFEDSYQYEHLQNVVDNMNLLYVAFTRACKSLFIFGQRKVQARRSKIIED SLEKLHESLSDSRLEGDMNKRDDVLCFSYGELWVPSEEETKFSENVFFSPIETQSVEMKS YGNSVEFRQSNQSRTFTLPETNEDTTQQSYIQLGNVLHMLFSKIKTTSDIPTILRELEFE GVLYDNIITHEKLQQLLEKRLNNPKVAEWFSPQWELYNECSIIHTNPITGEVMTHRPDRV MMQGDKVVVVDFKFGKPHPEYHDQIREYIHLLQQMGHTQVTGYLWFVYSNLIEEIK >gi|281305405|gb|ADEF01000033.1| GENE 9 15893 - 17971 772 692 aa, chain - ## HITS:1 COG:no KEGG:PRU_1648 NR:ns ## KEGG: PRU_1648 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 17 692 11 677 677 462 37.0 1e-128 MFYLVQMKNQYFKIFILLIICQYGLLGSLSAKSKKDSILTRIFTYPEKIKTLQAPDTVSY AYMKSSFHINKRNLLLMAVPTMYAMAHVGSRRYLEESYNKVTFLPNGKYQIDKILSLSSA GNHRLSFPAMLHYLTPNIYDVTLINENVLSPFNRQNKIYYKYTIEESADSLLKLHFKPRL KNTLLVTGEAKVDARSGKISTIQLTGEYDMIFYRLSIQMGNHGVQSLTPQNCSLTSRFLF FGNDVRTHYTIAYHLPKILPNISEANQNFQLMEQIRPEPLTSYEKMVYSELLKDKRNEEK DTTALDSVATPPKVNFVKSVLWDMIGENIFNDIHQDFGPNKAGSLRIDPILNPLYMEYSP SQGFYYNFNIRGGYHFSENSNIWLQLKGGYSFRLHQFSFWIPLIYYFDIRHNGFISSGLS GGRRIQNGNLVNELRIATNNNRVWDNLNLYEFNDSFWDCYANYDFTPKIGFQAGFVFHRR TALNKVGFELINKPSVYTSLAPKFQVHYRPWGYQGPTLMACYEKSIKKLAGTNTPYTRWE FDGQYILPLHNVQSLSMRIGTGFYTDRSHNDYFVDFENFRQTFLPNGWNDEWSGEFELLE SSLYNQSNYYVRANFTYESPFLVLAWTPLIGHFIERERLYLSALRVKNANPYLELGYAIK TRFLSIGAFMSNMNGRTKDFGFKFGFELFRRW >gi|281305405|gb|ADEF01000033.1| GENE 10 17950 - 18129 134 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MREWKTLSLKAPKLSKKADVSQKQSLIWLFFKQILSLHEIEAKMERYYFPLVACSIWCK >gi|281305405|gb|ADEF01000033.1| GENE 11 18309 - 18947 358 212 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223039927|ref|ZP_03610210.1| ribosomal protein L22 [Campylobacter rectus RM3267] # 1 210 6 201 208 142 38 4e-33 MNCFSSLMGNLNYGTVFLLMYIEGTVIPVPSELIVSPAAYHAAAGHLDMTLVIIVATLGA VLGSATNYIAAYYLGRPIVYKFANSKWGHMCLLNQEKVEKSEKYFYDHGVIATLTGRLLP GIRQIISVPAGLAKMKFWKFILYTTIGAGIWNCVLAALGWYLHFIVPEEQLNEKIIEYND HIKVVILGIAAIVALYFLIKYLYRKNKQKKTV >gi|281305405|gb|ADEF01000033.1| GENE 12 18995 - 20416 1127 473 aa, chain - ## HITS:1 COG:MTH83 KEGG:ns NR:ns ## COG: MTH83 COG0457 # Protein_GI_number: 15678111 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Methanothermobacter thermautotrophicus # 176 372 124 315 379 72 33.0 2e-12 MTSNDNSYFESKEFKNILQQFEKSQTSGNPMFMDSDDFSDIAEYYFNHGDFKNAKKAVHV GLDIFPHSTTLWIIKAKLTALVEKDITKAYTYLERVEDKSDFEYIYLLGKLKLREEQTEE AEKLFRNHLNDLVEEERENFIFDIASLYAINEQFMKAEDWFELLKSKTDDDCQELKGRIL LGLGDYEESERIFQKLIDKNPYSVDYWTDLASLQAINDRFSDAITSCEYAIAINPKNSLA IIIKANSLFNLGNFEEALKYYLAYQQLDPNDVTIDGLIGVSYLQLDQPAKALAHLKRAEQ QNQVTPESLAEIYENIALTLSHLGKMDEALSYVDKMQNLECMDMEDIKLTKGHILLENDQ VEAAQEIFQEAIRQPNASTYTALKIAVFSYNCGYVQMAYEVLKNLLESVDETWEYGYSYF AVCCKTLNKTDEFIQAVKKACEKNPYEAQKVLQTFFPEGMKPEEYYDFLLQNQ >gi|281305405|gb|ADEF01000033.1| GENE 13 20452 - 22167 1506 571 aa, chain - ## HITS:1 COG:VC0997 KEGG:ns NR:ns ## COG: VC0997 COG0008 # Protein_GI_number: 15641012 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Vibrio cholerae # 11 571 5 555 556 580 52.0 1e-165 MTVQEDNHTEEKKSLSFVEQLVEEDLAKGKNGGRIQTRFPPEPNGYLHIGHAKAICMDFG IAEKYNGICNLRFDDTNPSKENNEYVENILNDISWLGFKWENIYYASDYFEKLWDFAVWM IREGHAYIDEQTAEQIAEQKGTPTTPGVASPYRDRPIEESLKLFEQMNTPEAVEGSMVLR AKLDMANSNMHFRDPIIYRIIHIPHHRTGTKWHAYPMYDFAHGQSDYFEGVTHSICTLEF VPHRPLYDHLIDFLKEMDGTSDVMDDNRPRQIEFNRLNLTYTVMSKRKLHALVEEHAVSG WDDPRMPTLCGMRRRGYSPESIRNFIKSIGYTKFDALNDVALLEAAVRDDLNKKACRVSA VLNPVKLVITNYPDGESEEMEAINNPENEADGTHTITFSKNLWIERDDFMEDAPRKFFRM TPGKEVRLKNAYIVKCTGCTKNENGDIIEIQAEYDPQSKSGMEGANRKVKGTLHWVSADH CQQAEVREYDRLFYIENPGADERDFHELLNPDSLHIFKNCYVEEYAANKKPGEYLQFQRI GYFMADPDSSASHLVFNKTVGLKDAWAKVKK >gi|281305405|gb|ADEF01000033.1| GENE 14 22423 - 22536 105 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPISVKKRAFFLGWFYKLALLDFELIFEVKMQEREGV >gi|281305405|gb|ADEF01000033.1| GENE 15 22722 - 23768 733 348 aa, chain - ## HITS:1 COG:aq_775 KEGG:ns NR:ns ## COG: aq_775 COG1559 # Protein_GI_number: 15606156 # Func_class: R General function prediction only # Function: Predicted periplasmic solute-binding protein # Organism: Aquifex aeolicus # 71 337 63 322 326 110 28.0 3e-24 MDQQHKNRYLVAAATCLFLVFGLMYYYFFSAFSNSETTQYIYIDTNDNVDSVVAKLTPIA KQHSLHGFTTLMRHSQYADHIRTGRYAIKPSQGAFTVLRHIKNGIQDPINLTIPSVRTMD RLSEELGKRLMLDSTDIAKALTSQEICKKYGYDTTTIACMFIPDTYEIYWNISIDQLLDR VKKESNRFWNSKRTAQAQALKLSKNEVITLASIIDEETANNAEKPMIAGMYYNRLMLRDS KYPNGMPLQADPTIKFAWKDFDLRRIYQKLLNIKSPYNTYKNTGLPPGPIRIASIAGIDA VLNMVHHDYLYMCAKEDFSGTHNFAKTYQEHLGNANKYTAALNKRGIQ >gi|281305405|gb|ADEF01000033.1| GENE 16 24336 - 24518 150 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880694|ref|ZP_06289396.1| ## NR: gi|282880694|ref|ZP_06289396.1| hypothetical protein HMPREF9019_1814 [Prevotella timonensis CRIS 5C-B1] # 8 60 1 53 53 95 100.0 9e-19 MLSECGTMSRKTVDDLEIHKTICTFAVIKAMLMCQIVLLASLIAYDKHDGESNDFLNRLS >gi|281305405|gb|ADEF01000033.1| GENE 17 24561 - 25214 587 217 aa, chain + ## HITS:1 COG:TP0554 KEGG:ns NR:ns ## COG: TP0554 COG0546 # Protein_GI_number: 15639543 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Treponema pallidum # 7 211 9 217 222 116 33.0 3e-26 MEYSTYIFDLDGTLLDSLQDLAISCNYALKKHQMPERTIEEVRHFVGNGVKKLMERAIPG GLEHPEFDETYQDFRQHYLVHNLDNTRPYLGVMDLLKNLHEHGKKLAVVSNKFYDATREL CQHFFSDYVSVAIGEREDIHRKPAPDTVIEALRQLGVDKTDAVYIGDSDVDIATARNSGM PCISVLWGFRDKEFLLEHGATTFVSSPQELMLPLDSK >gi|281305405|gb|ADEF01000033.1| GENE 18 25283 - 26620 1309 445 aa, chain - ## HITS:1 COG:STM0350 KEGG:ns NR:ns ## COG: STM0350 COG1538 # Protein_GI_number: 16763730 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Salmonella typhimurium LT2 # 28 433 88 483 503 71 19.0 3e-12 MNKIFQISLCGMALLLSTSTVQSKEWSLKDCIHYALTHNISLQKKTLQHLSAQEDTKQSQ AALLPSLAVSSSQNLTYRPWPQTGISTGGYMQASVDKVYYNGSYSINSNWTVWNGGKNRH TIKLNKLLEQQTALDSAEMANKLIEQIAQLYVQILYSKEAVAVNQSILETSKQNETRGEE FLKVQKMSRADMAQLTAQRAADEYNVIEAENNLRNYKRQLKELLQIIDTEEFDVLPPRQI EIVENQAIPSVSEIYTTALNNRPEIRNAALGIESSNLSVRIAKAGKLPTLGVSAGVGTST TSMSNYEWGKQIKNNFDIGAGISINIPLFDNRQTKTAVNKALLQKQSYMLDLKDKQTKLY STIEDYWLQATNNQHRLRAAMISTKSAEESYQLLKAKFDENLINIVELMKGKDQLMNAQQ NELQAKYLTLLNIHLLKFYQQGVME >gi|281305405|gb|ADEF01000033.1| GENE 19 26842 - 26988 82 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVCVNDVLNHFERYKAEEAGYDLKKTSADECKKKTKLVGFILNLYLCI >gi|281305405|gb|ADEF01000033.1| GENE 20 27499 - 28098 575 199 aa, chain + ## HITS:1 COG:L0164 KEGG:ns NR:ns ## COG: L0164 COG0307 # Protein_GI_number: 15672976 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Lactococcus lactis # 1 196 1 192 216 152 40.0 5e-37 MFSGIVEEMATVVAISHDQENIDFTLKCSFVDELKIDQSISHNGVCLTVVRLHDDTYTVT AMKETLERSNLRLITIGDKVNVERSMLMNGRLDGHIVQGHVDQTATCVKMQDADGSTYFT FEYPYSREMAKRGYITVDKGSVTVNGVSLTVCEPTDNRFTVAIIPYTKEHTNFCDIKVGS IVNLEFDILGKYIARLREI >gi|281305405|gb|ADEF01000033.1| GENE 21 28251 - 29948 1633 565 aa, chain + ## HITS:1 COG:PM0425 KEGG:ns NR:ns ## COG: PM0425 COG0488 # Protein_GI_number: 15602290 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Pasteurella multocida # 8 560 4 550 556 624 56.0 1e-178 MATVDDKKIIFSMVGVSKIIPQNQKQILKDIYLSFFYGAKIGIIGLNGAGKSTLMKIIAG IEQPTQGDVVWSPGYSVGYLPQDPPLDETKTVKENVQEGVHKVYDALKEYDEINVKFGLE EYYGDPDKMDKLMQRQAELQDIIDATDAWNMDSKLERAMAALRCPAGHLPVTNLSGGERR RVALCRLLLQKPDVLLLDEPTNHLDAESIDWLEQHLQQYEGTVIAVTHDRYFLDDVSEWI LELDRGEGIPWKGNYTSWLEQKTKRMDQEEKTASKRRKTLERELEWVRMAPKARQAKGKA RLNSYEQMLNEEQKTREDKLEIFIPNGPRLGNKVIEAQHVKKAFGEKVLFTDLNFMLPPN GIVGVIGPNGAGKTTLFRLIMGLEQPDAGTFEVGETVKLAYVDQQHKDIDPQQTVYEVVS QGNENIRMGGRDVNARAYLSRFNFSGTDQNKKCEVLSGGERNRLQLALALKQEGNVLLLD EPTNDIDVNTLRALEEGLESFAGCAVVISHDRWFLDRICTHILAFEGNGEVFYFEGTYSE YEINKARRLGNEDIKKGRYRKLMED >gi|281305405|gb|ADEF01000033.1| GENE 22 30059 - 30910 365 283 aa, chain + ## HITS:1 COG:no KEGG:PRU_2416 NR:ns ## KEGG: PRU_2416 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 146 255 129 238 280 87 37.0 4e-16 MRTLITFFICFSFTLHAQEKQGRVMRPNTKGIGKCLVIGQASIKVIYALNANDIRDERTY IDSQVLLIGKGLSKLYSRFLELNDSLHDDFIKRNPNATSMPRIFFSGGRNCQYWSEYQFT DIYSDNGIYTCYATMPWAMERYNAFYTEPMYQQHWTLSNEQLSILGYDCQKATCQWRGRT FEAWFTTKIPTRLGPWIFGGLPGLILKIYDKDHLYTWEAVEIKSGKFPIVKSEYKGFVKD TREHIYKLQVAANRDHLKTAGARDYQTGQLKSKPHPYEPLEKE >gi|281305405|gb|ADEF01000033.1| GENE 23 30911 - 33649 1260 912 aa, chain + ## HITS:1 COG:no KEGG:ZPR_4162 NR:ns ## KEGG: ZPR_4162 # Name: not_defined # Def: hypothetical protein # Organism: Z.profunda # Pathway: not_defined # 5 909 7 876 878 273 25.0 2e-71 MKTTTIFCLLIIFCLKIQAQTVIEGSVLDAQGRSGDAIVTVTLKGNSSVLAFAETDSKGD YRLEVNSQSDSLTITAAGMSIGQQVKIVANRSQRLNFRVNEKVLQLKGVEVHAKKIRQNG DTLNYSVGAYQQQGDRTIGDVLKRMPGIEVSDNGSIKFNGKSISKFYVEDMDLLQGRYGL ATGNINAQDVGSVQVLENHQPVKALQGRTPTDDVAINLKLKNAAKGTVAVNTMLGGGGQQ SGGWGFGMRSLSDGQNPIGRNPLWTVEVVGMYFAKRRQNITLYKGNNIGDDVSQELTSHY SGINDVGLVAFAPLGVVTPSGSGLPQKRTFDNQSHIVSMNHLEKIGKQSELTLNMSYLHA SIRQEGISEADRFYSSNQRLLSSESLIFITHMNNLSTNLRYNRNGENGFIANVLKLDGEW NNDNVQSQLTSDLTGAVPINYGDNRVYQYFHRPSLTISNTMNLIQNYGKRTLDLHFSVGY AQRPNTLMVGVDSLLSQTSAHYNQELKSRNIAGDFHTNFTFHLRSFSLDYGILANASLHG IKTDLSGFTNLTANDSQNHTSQTILNDLWYNTYELSLNQQYKFEQAGWRLSLTCPLNLYT QTLDDRITKNKNKYTRLLVTPSFTVNYEWRDWSGNINATYYKNVGDPGSIYSGYIMNNYR TFQRSYVEHLSETSCFTTSASVGYRSALTATFFRINGNYGHTRDNQIYGYEYRGATSVVH AIDKKTYTDNYAFGFDGSKGFDWLQSTIRAFGGYSYSKSERLIAQNLYPFHSRTISIGGG GTITPLTWLNIVFTSGYAWNVSSIDAINNYSSQTVRTATQRIKFNVFVTKQFTFTTTIEG NYNNLTEKNRHTWFGDMLFKYKLKHIELDLQANNLFNQSQYTRVNYSGLDIYSSISQLRP LNIIGTIRFKIL >gi|281305405|gb|ADEF01000033.1| GENE 24 33945 - 34481 545 178 aa, chain - ## HITS:1 COG:no KEGG:LAR_1478 NR:ns ## KEGG: LAR_1478 # Name: not_defined # Def: hypothetical protein # Organism: L.reuteri_K # Pathway: not_defined # 2 132 3 132 176 87 35.0 3e-16 MLHIKEIKKDSKDIELVKRLYVEAFPKVERMSFDSLLLLQRKADVRFLGFYDKNDEFKGL TYTYHHDDLSWLFYFAVMPNERGKGYGTRIIKRLLEIYKNERFMIDIEDVDQPASNTEQR KKLYEFYKRMGFIDYGVRKVWPGITYNIMSCGGLVTLEDYNRVYNEFWEIIEPLEESE >gi|281305405|gb|ADEF01000033.1| GENE 25 34636 - 36147 1191 503 aa, chain + ## HITS:1 COG:BS_yngK KEGG:ns NR:ns ## COG: BS_yngK COG1649 # Protein_GI_number: 16078889 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 24 502 26 510 510 328 39.0 2e-89 MNKYLISIRLLFLFLCCELSVFVFARNAQKHEFRGAWIQCVNGQFEGMGTQQMQQTLRYQ LDELQKDGVNAIIFQVRAECDALYPSRYEPWSRYLTGVQGKAPYPLWDPLQWMIEQCHER GMELHAWINPFRAKTKGTTALASNHIAIKQPGSVFTYGGQFILNPGNPANRAYIYQVVDD IVSRYDIDGFHIDDYFYPYPAPGEIIQDGREYRQYHNGINNIDDWRRYNVNVFIKELGEK IHQRKPWVKFGVSPFGIYRNKKSDPKIGSNTRGLQNYDDLYADVLLWVNNGWVDYCVPQL YWQIGHSTADYETLIKWWNKYAGNRPLYIGEDVERTVKFADPKNPNSHQMPAKFKLHEEM NHVKGTVLWYAKAVVDNVGNYGTTLRNYYWKYPALQPKMPFIDDKRPKKPRKVKAVWTSS GYLLFWTPPRGKNWDDVATKYVVYRFNKGERVDLDDPSKIVTITNKTMYKLPYADGKTKY RYVVTAVDRMNNESKGKKKNIKI >gi|281305405|gb|ADEF01000033.1| GENE 26 36190 - 36639 473 149 aa, chain - ## HITS:1 COG:no KEGG:PRU_0802 NR:ns ## KEGG: PRU_0802 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 144 1 144 146 128 50.0 5e-29 MQPSEQTINQIERTIRKIAQKFSEEIESVNITDIHLRVGQDSGELRAYNDDDQEITRCVI SEWIDYKEDDFYDVVTDILRTNLKKHSHLVDQMNILKPFSFILEDEDGEHLAELYVADDD TVIIGKDLMNNLEEDLDSFLDHLLNENLS >gi|281305405|gb|ADEF01000033.1| GENE 27 36842 - 37345 473 167 aa, chain + ## HITS:1 COG:no KEGG:PRU_0797 NR:ns ## KEGG: PRU_0797 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 167 1 167 167 201 59.0 1e-50 MLEVTVRDTALQKAAEQGMDAFLQTFIDAIYQAIGGELTADTMSQLNADQITLLAYDILH KEVMDGGFIQLIHNGYGAFIFHNPFDKAVRAWGMIDLFRIMKKCHNLYRKYGAEIERDCS EDEFMALFEKYPEFDDYDNTFVENEERWTSEIANYVDQHIDKFAKII >gi|281305405|gb|ADEF01000033.1| GENE 28 37348 - 37827 522 159 aa, chain + ## HITS:1 COG:Cgl0781 KEGG:ns NR:ns ## COG: Cgl0781 COG0691 # Protein_GI_number: 19552031 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Corynebacterium glutamicum # 1 156 1 155 164 127 42.0 7e-30 MNKDEQALRKKSPIQIKNKRASFEYFFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYIN NGEIWVKGMNISPYFYGSFSNHEARRDRKLLLTKREIRRLEIDAKNPGNTILPVLLFIDQ KGRAKVDIVLAKGKKEYDKRQSLKEKEDQREMDRALKHY >gi|281305405|gb|ADEF01000033.1| GENE 29 38618 - 39481 883 287 aa, chain + ## HITS:1 COG:PA3657 KEGG:ns NR:ns ## COG: PA3657 COG0024 # Protein_GI_number: 15598853 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Pseudomonas aeruginosa # 40 286 5 248 261 259 53.0 4e-69 MNFKRKKRWHSLPGVPLTELDKQVMYWENKGKLVPTRELIKTPEQIEGIRKSGVVNTGVL DEVACHIHAGMNTQEIDDICMNYCKEHNAIPACLNYEGFPKSVCTSINEVVCHGIPKTSD VLKEGDIINVDMTTIVDGYYADASRMFIIGKTTPEKEQLVRVTKECLEIGAEAAKPYSFV GDIGHAIQKHAEKYHYGVVRDLCGHGVGLKFHEEPNVNHYGHKGTGMLLVPGMVFTIEPM INMGTWKVYIDADDPFGWEVITGDELPSAQWEHTFVMTEHGVEILTH >gi|281305405|gb|ADEF01000033.1| GENE 30 39566 - 40591 625 341 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227425790|ref|ZP_03908856.1| SSU ribosomal protein S18P alanine acetyltransferase [Atopobium parvulum DSM 20469] # 6 322 480 799 832 245 41 5e-64 MRDIYILGIESSCDDTSAAVLRNDILLSNVTASQAIHEAYGGVVPELASRAHQQNVVPVV DQALKKAGISKNQLDAVAFTRGPGLMGSLLVGVSFAKGFARSLGIPMIDVNHLQGHVMAH FIKEDEEDFHQPPFPFLCLLVSGGNSQIVKVNAYNDMQVLGQTIDDAAGEAIDKCSKVMG LGYPGGPIIDKLARQGNPHAYQFSEPHIEGMDYSFSGLKTSFLYSLRKWMADDPDFIEKH KTDIAASLEFTIVDILMKKLRMAVKQTGIKHVAVAGGVSANNGLRNAFHEHADKYGWTIY IPKFSYTTDNAAMIGITGYYKYLDHDYCSIDQPAFSKVTFK >gi|281305405|gb|ADEF01000033.1| GENE 31 40672 - 41190 530 172 aa, chain + ## HITS:1 COG:slr0427_2 KEGG:ns NR:ns ## COG: slr0427_2 COG1546 # Protein_GI_number: 16331609 # Func_class: R General function prediction only # Function: Uncharacterized protein (competence- and mitomycin-induced) # Organism: Synechocystis # 4 122 3 121 164 110 43.0 9e-25 MNFENKVISREIQQFLYDSNKTLGTAESCTGGRIAEVIAAVPGASNYFKGGIIAYSNELK IRLLGVNAQVIDEQTAVCEEVAMQMAVGLCQTINCDYAIAITGIAGPGGGTPTIPVGTIW IAYGSKDDMRTFKLTEDNGRDVNLANATNQALNLFFDFLKETLSHQELDSKE >gi|281305405|gb|ADEF01000033.1| GENE 32 41361 - 41624 378 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150005786|ref|YP_001300530.1| 50S ribosomal protein L28 [Bacteroides vulgatus ATCC 8482] # 1 86 1 86 86 150 81 2e-35 MSKICQITGKKAQIGNNVSHSKHRTKRSFDVNLFSKKFYYVEEGCWISLKISAAGLRLIN KVGLDAALKQAVSKGYCDWKDIKVIGE >gi|281305405|gb|ADEF01000033.1| GENE 33 41630 - 41818 294 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150005787|ref|YP_001300531.1| 50S ribosomal protein L33 [Bacteroides vulgatus ATCC 8482] # 1 62 1 62 62 117 88 1e-25 MAKKAKGNRVQVILECTEMKDSGLPGTSRYVTTKNRKNSPERLELKKYNPILKKMTLHKE IK >gi|281305405|gb|ADEF01000033.1| GENE 34 41834 - 41992 227 52 aa, chain + ## HITS:1 COG:no KEGG:PRU_0750 NR:ns ## KEGG: PRU_0750 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 52 1 52 52 83 92.0 2e-15 MAKKAVATLHEGKMDGRAYTKVIKMVKSPKTGAYVFDEQMVPNEAVKDFFKN >gi|281305405|gb|ADEF01000033.1| GENE 35 42167 - 43471 741 434 aa, chain + ## HITS:1 COG:VC0090 KEGG:ns NR:ns ## COG: VC0090 COG0534 # Protein_GI_number: 15640122 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Vibrio cholerae # 2 416 18 432 454 258 38.0 2e-68 MKQVFRLALPSIISNITIPLLGLIDLTIVGHMGDVVYIGAIAIGSMIFNVMYWLFGFLRM GTSGLTSQALGKRDFTEIMRHLFCSLLIGFIIAFTFIIFQTPIRWLALELMQPSPEIAEQ ATIYFSICIWGAPAMLGLYGMTGWFIGMQNTRVPMVVSIFQNIINIIASLFFVYGFGMKV DGVAFGTLIAQWSGFMVAICCWYRYYRRLNRYPWTHKLLEKIDLKRFFKVNTDIFIRTLF LVGVNFFFISAGARQGDIILSVNTLLMTLFTLFSYVMDGFAYAGEALTGKYFGANNKIGF DKVYRSLFAWGAIMALTFTLVYVLGGHHFLLLLTNECDVVEAAHYYFWWAVFIPIVGVCA FIYDGIFIGLTETKGMLVSSVISAIAFFIFFISLKQLLGNHALWLAFLVYLALRGFIQWI LYRNMIPWSRISSK >gi|281305405|gb|ADEF01000033.1| GENE 36 43520 - 44896 1138 458 aa, chain + ## HITS:1 COG:STM3969 KEGG:ns NR:ns ## COG: STM3969 COG1322 # Protein_GI_number: 16767239 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Salmonella typhimurium LT2 # 24 458 38 450 476 170 27.0 4e-42 MEFLFLSVGLIFGGVFIFLLINGKKKAIETQLFLVKQQMEQEQLGKQELEKRIGLLQEEK DSLQNKMIQGQIDFQRVSSELESQKIFHSKESEMRREQFEQQLKTVQAQFSNLATQILEQ TSERLKLTNSESLEHITKPLKVNLEQLQQAIQQTNHESIKNTASLTQQLKEMSLQTEKIE NSAHQLTNVIRGGNQVQGSWGERILTDILETQGYIEGVDYDIQYTLTNEKGDAVRNDDTG KRMRPDVILHYPNNEDVIIDAKMSIDAYYKYVQTTEEGLKRKYATDLVNSIRTQAKNLSK KDYSSYVQAPRKAIDFVIMFVPNEGALQLALATEPRLWGEAFEKQVFITSQQNLMAILKM IQIAWRQYTQTENQKRVFSLAEELLKRVGEFIKRFDKIDTDIINLRKHYDEAYNKAYTGR QSIVQKANELKELGVKESANQAIPATKPDLQTITNNEE >gi|281305405|gb|ADEF01000033.1| GENE 37 44893 - 45396 279 167 aa, chain + ## HITS:1 COG:slr0328 KEGG:ns NR:ns ## COG: slr0328 COG0394 # Protein_GI_number: 16331232 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Synechocystis # 7 157 2 151 157 139 47.0 3e-33 MKINKKKLLFVCLGNICRSPAAEGVMKSIIDANKANANYEVDSAGIGNWHVGQLPDSRMR ACGLKRGYVFNSHARQFTKSDFQYFDYIFVMDQENYRQITSQTQNEDERKKVLMLADYIT QPANVKIIADPYYGNEKDFNNALDLIEDACQQLFVALETHNKSTNVI >gi|281305405|gb|ADEF01000033.1| GENE 38 45477 - 48197 2613 906 aa, chain + ## HITS:1 COG:BMEI1436 KEGG:ns NR:ns ## COG: BMEI1436 COG0574 # Protein_GI_number: 17987719 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Brucella melitensis # 4 906 46 929 930 1001 55.0 0 MSVKRVYTFGNGKAEGKADMRNLLGGKGANLAEMNLIGVPVPPGFTITTDVCNEYFEKGK EEVVQLLQEDVIKAVKHIETLMSSKFGDVANPLLLSVRSGARASMPGMMDTILNLGLNDQ VVKGLIQKTGNERFAYDSYRRFVQMYGDVVLGMKPVNKEDIDPFEAIIMDVKEKRGIFLD NELTVDDLKQLVVRFKEAIKKQTGKAFPDDPMEQLWGAICSVFDSWMNERAILYRKMEGI PAEWGTAVSVMAMVFGNMGNTSATGVCFSRDAATGENRFNGEYLVNAQGEDVVAGIRTPQ QITKEGSLRWAKQQNIEEAVRAKNYPSMEEAMPEIYEQLNSIQDKLEKHYHDMQDMEFTV QEGKLWFLQTRNGKRTGTAMVKIAMDLLHEGEIDEKTALLRCEPNKLDELLHPVFDKVAQ STAKVLTRGLPASPGAACGQIVFFADDAVKWHEDGRQVVMVRMETSPEDLAGMSAAEGIL TARGGMTSHAAVVARGMGKCCVSGAGAISVNYKERLVEIDGVILREGDYISINGSTGEVY QGQVETRAAEVTGDFAELMKLCNKYTKLVVRTNADTPHDAEVAHNFGAVGIGLCRTEHMF FENEKIKAMREMILADSQEGREKALEKLLPYQKQDFYGILKAMDGHPVNIRLLDPPLHEF VPHDLAGQEVMAKDMGVSVQYIQNRVNSLSELNPMLGHRGCRLGNTYPEITAMQTRAILG AAIQLKKEGFNPRPEIMVPLIGMVKEFDVQEDVIRSTAKELFEEEGVEIPFHIGTMIEIP RAALTADLIAKRAEYFSFGTNDLTQMTFGYSRDDIASFLPVYLEKKILKVDPFQVLDQDG VGQLIKMAVEKGRSTRKNLMCGICGEHGGEPSSVKFCHRVGLDYVSCSPFRVPIARLAAA QAAVEE >gi|281305405|gb|ADEF01000033.1| GENE 39 48281 - 48754 354 157 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282878915|ref|ZP_06287679.1| ## NR: gi|282878915|ref|ZP_06287679.1| hypothetical protein HMPREF0650_0585 [Prevotella buccalis ATCC 35310] # 1 157 1 157 157 177 56.0 3e-43 MLSRFLVIIFSLVLATNTYAERSAKVGNVTMGMDYEQALDSIRIEFGKPNMVNQDMVLFR NLSYRGFVFDKVLFKFKAAKFNEARFFIYAKNKAAAVKDLSRLSEAFKKNYSLAEDYEDG LYFYKGGISPKGIGHLFTISVAKRQGNWNTELTFGPF >gi|281305405|gb|ADEF01000033.1| GENE 40 49055 - 49849 482 264 aa, chain - ## HITS:1 COG:alr3188 KEGG:ns NR:ns ## COG: alr3188 COG1397 # Protein_GI_number: 17230680 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ADP-ribosylglycohydrolase # Organism: Nostoc sp. PCC 7120 # 1 258 1 260 266 174 38.0 2e-43 MKNLLLSAAIGDITGMPYEFENRTKNYNAVNLLLSSNTYTDDTVCTFACAEALIKNLNMT ENLWKRCRADLYRGFGGRFARWLIAKDIQPPYNSFGNGSAMRVSSAGFMAKDAKECIELA TQTAMPTHNHPEGVKGAVATALAIFYGMQGKNKDFIREHILEKYYPNWSDLTYQGIKPNY DFDETCQQTVPAALICFLESTDYADCLKLAIALGGDADTLAAISGPMAYAFYKTMPKELI DNAIAKLPEWMLEVNKQFDEFVSR >gi|281305405|gb|ADEF01000033.1| GENE 41 49961 - 52510 1474 849 aa, chain - ## HITS:1 COG:no KEGG:ZPR_4162 NR:ns ## KEGG: ZPR_4162 # Name: not_defined # Def: hypothetical protein # Organism: Z.profunda # Pathway: not_defined # 9 848 16 877 878 204 23.0 1e-50 MLLTCLCNSSFSQSVVTGFVRDTTGLALEGVIVKATADKATLTFARTSEKGAYQLTLKTD AKQLIITAETIGYEKAKREIKNISQKCDFILKEKTTALKEVVVKAPAIYQRGDTLSYNLA SYIGKNDYTLKDALKKLPGIEVEDKGSIKYLGKEISNFYIDNMDLLGGRYNIATTNIPAS LVSTVEVLSNHQAVKAKKDVFSDNVAINVKMSNKAKFKPVGSYGGSLGVGKHTLYEVNGA GMLFMSNFQMLASLKVGNINQFALTDGTNHFAKQETSSTVSHLLGNLSASTPPIDVDRYA SPTDRLVSFNLLKKIQKDVTLKGNIGYSYAKSKYDYSLTRNYADADHHIMIAQAYSPLLT VHRPSILLEYKDNSDKTYLRNTLSGTGSFLTSELPTRENGLLFNQKQTMREFHVNNKFST LWYHKNLRWSVTSIMSYQGSPMGKISLNKETADGVVQNANGQKFKTENTISVSKKHLNSR IYLPLMLNYYIDKVKTNLQPTDEGNDVSMQNLRMALAPQYEYSHPQYKYVFRVEIPMRID YIAHRDHMAASSAGSWYYSICPSVYCNYKVTSRSVLRTNLFYARNFGDILDFLKAPVRIN DTSLKIGSGILADNKSLNASLHYDYKIPLKMWFLNVDLLYNQEKNNLLLNQDANSTLVTM SKIYASNTGRSLMEQIGITKFIEPIKTKISVNGVYQWKRQTTLQNDVQQKYTWKSLIFAP KLTSQPFKYVELDYHGMFAKTYLSTKYQSNSYLSQQHKVSLKIMPFDGFTFDTSADIVKN ELTKDFTKTMSLLDMGLSYRKKAVKVSLDIRNILNQRHYAYTIYNSVNTFTYNYQLRGRE CICSVKLTM >gi|281305405|gb|ADEF01000033.1| GENE 42 52551 - 53381 512 276 aa, chain - ## HITS:1 COG:no KEGG:PRU_2416 NR:ns ## KEGG: PRU_2416 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 14 234 24 241 280 103 27.0 9e-21 MKKFVLLTAAVCLTSVAFGQNASSSLIDEYECIYEYQVKNTKGSIDATSTILQIGRNTAK FSDYTTFQVDSAIACKAPEADIQKFKAQETRNDMLFDQSVSQNEPKGKLTVYSVITPNYY SYTESATPINWNLSEETNTVCGYTCQKAVGEYGGRTWTVWYSSEIPVSFGPWKLCGLPGL VLAANDAENLHQFKAITFRKSNTLMNLKPYANPINISREQFIKAKNKFEINPMGNIPVEA ISEMSVQKFDNGEYKTLINGVVLRVRPNGYVPLELK >gi|281305405|gb|ADEF01000033.1| GENE 43 53284 - 53475 92 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHSYSSMREELAFCPNATDVKQTAAVNKTNFFIFYVFYSCYSCDFSWLIEQFINVEESTF ELE >gi|281305405|gb|ADEF01000033.1| GENE 44 53710 - 53925 200 71 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149371717|ref|ZP_01891133.1| hypothetical protein SCB49_09940 [unidentified eubacterium SCB49] # 4 71 29 96 96 81 57 9e-15 MLFVAQGHVDNFYTVIDTFKNHYDSILNFFVNRATNANAESFNAKVKAFRAQFRGVTDIP FFLYRLMKLCA >gi|281305405|gb|ADEF01000033.1| GENE 45 54156 - 54632 304 158 aa, chain + ## HITS:1 COG:no KEGG:Slin_0312 NR:ns ## KEGG: Slin_0312 # Name: not_defined # Def: hypothetical protein # Organism: S.linguale # Pathway: not_defined # 1 150 1 149 157 67 26.0 1e-10 MKSNYLFPTVMKKVGWCMFVPSAIVLILVITDVLSDELVSFPTLLIGDVGLFSGNQSMVT FGTEGMLYEIATLFVALSLLFISFSKEEEEDEYVENIRMRSFVWAIKANTLLVILGTWFI FGTLYLELMIVFMYSMFLFFICKFNYELYKLRRTGNEE >gi|281305405|gb|ADEF01000033.1| GENE 46 54622 - 54828 195 68 aa, chain + ## HITS:1 COG:MA3984 KEGG:ns NR:ns ## COG: MA3984 COG1476 # Protein_GI_number: 20092778 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanosarcina acetivorans str.C2A # 1 63 1 63 67 70 60.0 9e-13 MKNNIRVERAIKRMTQQQLAEKTGVTRQTINAIEAGKYVPSTVLSLKISAVFGKKLEEVF QLEEADWQ >gi|281305405|gb|ADEF01000033.1| GENE 47 55262 - 57688 1543 808 aa, chain - ## HITS:1 COG:MA3477 KEGG:ns NR:ns ## COG: MA3477 COG0370 # Protein_GI_number: 20092288 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Methanosarcina acetivorans str.C2A # 118 804 11 665 670 562 41.0 1e-159 MKLSELKEGESGIIVKVTGHGGFRKRIVEMGFISGQKVEVLINAPLKDPVKYRIMGYEVS LRHSEAEMIEVVGIDESETLTSQPSSYQAGVPCECKNDSQSVTDEQLHAIAMKKSKVINV ALVGNPNCGKTSLFNYASGAHERVGNYSGVTVDAKEGYASFEGYRFNIIDLPGTYSLSAY SPEELYVRKQIVENTPDVIINVIDSSNLERNLYLTTQLIDMHLRIVCALNMFDESEERGD HIDFNQLGELLDIPMVPTVFKTGRGVEELFHQVIELYEGKEDVSLQYRHIHINYGHEIEQ GITNIQNYLKQNDSLRLKYSTRYLSIKLLEFDKKAEQVVSQLPQAENIFKARDKAAQRVK EETNTDSETAIMDAKYGFIHGALQEAQYETGHVKDTYQLTHWIDRIITHKYFGFPIFIAL TWLMFEVTFSLGQYPMDWIEDGVGWLGDIISQHFPQGPIKDMLVDGVIGGVGAVIVFLPQ ILILYCFISFMEDSGYMARAAFIMDKLMHKMGLHGKSFIPLIMGFGCNVPAVMATRTIES RKSRLVTMLILPMISCSARLPVYIMIIGTFFAAQYRSSIMISIYIIGILMAVILGRLFSQ FVIKGEDTPFVMELPPYRFPTGKAILRHTWEKGKQYLKKMGGIILVASILVWALGYFPKN EHLSKSKQQEMSYIGRIGKTLEPIFRPQGFNWKLDVGIIAGVGAKEIVASTIGVLYSSDE DYGNDDSYSTDTSKYTQLRHQMAADGITPLSAYAFLLFVLLYFPCIAVIAAIKSETGSWK WALFSAFYTTLLAWIVSAAFYQVGLLFY >gi|281305405|gb|ADEF01000033.1| GENE 48 58522 - 58779 84 85 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFQQRQLSNHATSPAESCNLTCRTVQPHLSTCVTPAADSCNISCRIVQPQLPTCAMPAVE SRNLSCRILQRHQPTRNLSRRFISF Prediction of potential genes in microbial genomes Time: Sat May 28 07:04:35 2011 Seq name: gi|281305386|gb|ADEF01000034.1| Prevotella timonensis CRIS 5C-B1 contig00083, whole genome shotgun sequence Length of sequence - 20444 bp Number of predicted genes - 18, with homology - 17 Number of transcription units - 12, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 226 - 256 -0.3 1 1 Op 1 1/0.000 - CDS 380 - 1159 637 ## COG1624 Uncharacterized conserved protein - Prom 1183 - 1242 1.9 2 1 Op 2 . - CDS 1364 - 2203 809 ## COG0294 Dihydropteroate synthase and related enzymes - Prom 2302 - 2361 10.6 + Prom 2621 - 2680 8.2 3 2 Op 1 . + CDS 2901 - 3083 262 ## gi|282880727|ref|ZP_06289428.1| hypothetical protein HMPREF9019_2030 4 2 Op 2 . + CDS 3123 - 5432 2089 ## gi|282880728|ref|ZP_06289429.1| putative lipoprotein + Term 5516 - 5563 6.2 - Term 5507 - 5547 9.0 5 3 Tu 1 . - CDS 5628 - 6968 981 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase - Prom 7158 - 7217 4.5 + Prom 7102 - 7161 6.5 6 4 Tu 1 . + CDS 7267 - 8052 494 ## COG3039 Transposase and inactivated derivatives, IS5 family + Term 8216 - 8261 14.6 - TRNA 8462 - 8536 47.0 # Glu CTC 0 0 - TRNA 8551 - 8637 57.4 # Ser GCT 0 0 7 5 Op 1 . - CDS 8763 - 9242 474 ## COG0295 Cytidine deaminase 8 5 Op 2 . - CDS 9239 - 10684 531 ## PRU_0981 putative lipoprotein - Prom 10707 - 10766 6.7 9 6 Tu 1 . - CDS 10791 - 11429 486 ## COG0637 Predicted phosphatase/phosphohexomutase - Prom 11499 - 11558 7.0 + Prom 11458 - 11517 4.8 10 7 Op 1 . + CDS 11609 - 12229 422 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 11 7 Op 2 . + CDS 12271 - 12915 398 ## COG0491 Zn-dependent hydrolases, including glyoxylases 12 7 Op 3 . + CDS 12931 - 13536 547 ## COG0817 Holliday junction resolvasome, endonuclease subunit 13 8 Tu 1 . + CDS 13639 - 14106 389 ## gi|282880738|ref|ZP_06289439.1| conserved hypothetical protein + Term 14171 - 14222 7.5 14 9 Tu 1 . - CDS 14121 - 14738 465 ## PRU_1304 hypothetical protein - Prom 14863 - 14922 4.7 15 10 Op 1 . - CDS 15332 - 17404 1395 ## COG0296 1,4-alpha-glucan branching enzyme 16 10 Op 2 . - CDS 17450 - 18583 1075 ## COG4642 Uncharacterized protein conserved in bacteria - Prom 18604 - 18663 4.7 + Prom 18553 - 18612 5.4 17 11 Tu 1 . + CDS 18689 - 19435 669 ## COG1212 CMP-2-keto-3-deoxyoctulosonic acid synthetase + Term 19617 - 19651 0.5 + Prom 19679 - 19738 6.7 18 12 Tu 1 . + CDS 19985 - 20191 74 ## Predicted protein(s) >gi|281305386|gb|ADEF01000034.1| GENE 1 380 - 1159 637 259 aa, chain - ## HITS:1 COG:BS_ybbP KEGG:ns NR:ns ## COG: BS_ybbP COG1624 # Protein_GI_number: 16077243 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 2 258 6 255 273 182 39.0 6e-46 MIPFDIGIKDIIDIVLVALMLYYVYRLMKESRSLNVFIGILFFILIWLFVSQVLEMRLLG SIMDKLVSVGVIGLIILFQEEIRRFLYQLGAHQRFQALSKFFTANHENDEEDKETIVPIV LSCMSMAKGRVGALIVIERSVSLGEIVETGDFIDARVNQRLIENIFFKNSPLHDGAMIIS NRRIKAAGCILPVSHDLNIPKELGLRHRAAMGVSQSSDAIAVVVSEETGRISVAMNGEFR LRLSAEDLESLLASEMKRR >gi|281305386|gb|ADEF01000034.1| GENE 2 1364 - 2203 809 279 aa, chain - ## HITS:1 COG:VC0638 KEGG:ns NR:ns ## COG: VC0638 COG0294 # Protein_GI_number: 15640658 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Vibrio cholerae # 15 278 11 276 278 172 37.0 7e-43 MKKKTYTMNVRGRLVDLSRPQVMGILNVTPDSFYQGSRKQTEAEIANRANEIIEEGGTMI DVGAFSTRPGAAFEVTQEEEMDRLRRALGIVRREQPEAIVSVDTYRPAVARRCIEEWGAD IINDVSEGGITGIVNTPIHEDESMFKTVAQLQVPYILMSVKSNLRDMLISFAGEVQELYA LGAKDIILDPGFGFGKTLDDNYVLYKKMEDLQVLDLPILVGISRKSMIYKFLGGDPTTSL NGTTVLNTLALQKGATILRVHDVKEAVEACKIYEKMQNV >gi|281305386|gb|ADEF01000034.1| GENE 3 2901 - 3083 262 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880727|ref|ZP_06289428.1| ## NR: gi|282880727|ref|ZP_06289428.1| hypothetical protein HMPREF9019_2030 [Prevotella timonensis CRIS 5C-B1] # 1 60 1 60 60 107 100.0 3e-22 MKKKYIAPVCHIIPIEIESLLTVVSGQNSDIKDYQHVDFDPGKSGDPNASDNQDYGDYEN >gi|281305386|gb|ADEF01000034.1| GENE 4 3123 - 5432 2089 769 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880728|ref|ZP_06289429.1| ## NR: gi|282880728|ref|ZP_06289429.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 769 4 772 772 1587 100.0 0 MRRILLLTKTIFCAIALLVLSAGCADETFPEPNSKETETSKERATSVITIENGSAGVSLP QSTASTRAAVTMNEMFQLTEDNDFETDAYLIKEDDDESINDKRKLAYLHIRWKNKTKTAD GWSLSTYEPSITLEWINKKAVDIMPGENWYVAGIVGGDMERDEGIPSSVEFYGQEGKKPK VMNASVAGSSSKHKFNVPFVANWVKVGIKGKNKIEFHNMHFEPQGVVFKVKVKRNEKLLK PEEHEYMFSSTGLSPNVFFSFVDYDNSLDPRQSHSVRVSHNNPVKDYWVWHYPTDQRDLG NGTEKQTNKAIMNDKKQFLFSHTTELRYRYTYPASKIKGKDYDVFYVWGMPINGGEFVEY KSYTGTGNKNSAKPDLSKAKFELGNTTAITSAHGGFMLGWLNGDGKVRGEFLCGTPHTNE FQRIDDWSPYMGKIMDVNLKVMRPGDKRYKWRVPLARMAKSNLARPTSVYNEIPTDQLVF TNDLEPNLGKGRFKQAELQILVEAGKGPKDYHIPAIEEFGAALPYVSKKCDPDWTENQKD LEGSNLGFTKDGLGPQLDGYFKEWLQLKDLQGFSAPSLYNSIYKTVIDGNSKVIYAIRFE HVRSTGNKDLTGNRYRCAYRFVIHTADKGGCNVDGRGRRLAITARWIGNLPITIDEIAKP EYWNKNNSNDVVRILNDDGDRKEKKIVDDACYFSGSKPYTTYEDPTNPNKTYYCRYFHPN GFYRGFMTKGPGGKFAPIRCFANWDLSESAPNAPRQQRITGAHNEEYYK >gi|281305386|gb|ADEF01000034.1| GENE 5 5628 - 6968 981 446 aa, chain - ## HITS:1 COG:CAC2128 KEGG:ns NR:ns ## COG: CAC2128 COG0770 # Protein_GI_number: 15895397 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Clostridium acetobutylicum # 16 439 26 438 452 207 30.0 2e-53 MDISELYKLFLKHPVVTTDSRDCPKDSIFFALKGTSFNGNEFAGSALEKGCAYAVIDQKE YQIQQDERYILVEDCLQTLKQLANYHRRKLGIPIIGITGTNGKTTTKELLATVLAERFNV WYTQGNFNNEIGVPKTLLRLTSEHEIAVVEMGASHPGDIQSLVTVVEPDYALITNVGRAH LQGFGSFEGVKRTKAELYDYMEVNKPNGKVFINQDNPHLQEMFQAHCPHVHRISYSQTQQ TGVSYQGKICSNNPFLTFQWRHIPEGETSPNSNQWYEVHTHLVGAYNLDNLLAAISIGHY LGVQPHEINHALTHYTPSNNRSQLEVTKHNNLIVDAYNANPTSMEAALVNFAQMQVAPKM AILGDMRELGEVSVAEHQKIINLLNTLPIQQIWLVGEEFGKTTTTFQKYKNIEEVKETIR QQQPQGFYILIKGSNGIKLFQLPELL >gi|281305386|gb|ADEF01000034.1| GENE 6 7267 - 8052 494 261 aa, chain + ## HITS:1 COG:AGl863gl KEGG:ns NR:ns ## COG: AGl863gl COG3039 # Protein_GI_number: 15890547 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 9 230 16 231 351 142 37.0 7e-34 MKQRPSSPSFADLIVGQCKVKQTFFSQIDNIIDWNPIRSIIEIAYTKDNKATGRPSNDSL VLFKTELLRTWYGLSDGEVEDQVNDRLSFSRFVGLGLNDCTPDSTTVCRFRNILVEADLY DNVLQEINRQLELAGVLVKRGAIVDASITDSPRRPRGRKEYEVVEDRNEESGRDVAENAM VKEIVKPNVDGEARWVKKMGKLHFGYKRHSVTDENGLVIAEETTPANESDIKHLEKPLEK AKLPQGTMLLVLNLNRRVSLH >gi|281305386|gb|ADEF01000034.1| GENE 7 8763 - 9242 474 159 aa, chain - ## HITS:1 COG:SP0844 KEGG:ns NR:ns ## COG: SP0844 COG0295 # Protein_GI_number: 15900731 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Streptococcus pneumoniae TIGR4 # 24 157 5 129 129 92 38.0 3e-19 MKKINLDITIHEWQLEELSVEDQELIRASIDATNHAYANYSHFYVGAAVRLANGKIVIGA NQENAAFPSGLCAERTAVFAAQANFPKEPILTLAIAAKNDKGLLAEPITPCGACRQVILE IEDRYRQPVRILLYGTNKIYSIDSIKDLLPLSFIDENMH >gi|281305386|gb|ADEF01000034.1| GENE 8 9239 - 10684 531 481 aa, chain - ## HITS:1 COG:no KEGG:PRU_0981 NR:ns ## KEGG: PRU_0981 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 13 445 10 435 442 345 41.0 3e-93 MNIRYCGLLLLFVIIGFTACNDEDNFSSSSEFTLSFENDSIQLDTVFSNVPSSAKSFWIY NRSGAGIKCSNVRLNRGNQTGFRVNVDGIYLGKEMGYQTSDIEVRNGDSIRVYVEVTPPV NHQQDAKRVEDALLFTLQSGKVQKVHLSVYSWDAIQLNKLHISRDTVIASERPILVKNGI TVDSAATLTIQEGTSLYFNHNAGIDVYGRLIVEGTAVHNVVLRGSRLDAMFDYLPYDRLS GQWQGIHYFSFSFDNQLKYVDIHGAFNGITIDSTDIARQTLAIASSTIHNCQGYGVNSRH AKWTAVNTLFSNTLNDCVYLDGGEAELMACTLAQFYPFDAKRGVALHIDTKHFPVSLFKC TNTLITGYANNEILKPTADSAFPLNFHFESCLLRTSITTPEDSLHFTNVIFENVNDTLLA GAKNFKTVDTDSLKYNFELRETSLAIDKATQVGSPLKDRKGAERGKNPDIGAFEYIKPKQ R >gi|281305386|gb|ADEF01000034.1| GENE 9 10791 - 11429 486 212 aa, chain - ## HITS:1 COG:CAC0855 KEGG:ns NR:ns ## COG: CAC0855 COG0637 # Protein_GI_number: 15894142 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Clostridium acetobutylicum # 6 203 5 208 212 90 31.0 3e-18 MYTTALFDLDGVILDTEPQYTILWDQIGEEYYPELKHFAHRIKGQTLVQIFEMYFRNNDA VQRTITNRINEYEREMQYHYILGVKEFIEDLRQHQINTAVVTSSNLAKMKNVYRNHPEFG RLFDKILTSEDFLKSKPHPDCYLQAAANFQVPVSECVVFEDSINGLKAAKAANMTVCGLS TTLPASEISSLCDVVIPHFKGFDYPKFRSMFG >gi|281305386|gb|ADEF01000034.1| GENE 10 11609 - 12229 422 206 aa, chain + ## HITS:1 COG:PA5564 KEGG:ns NR:ns ## COG: PA5564 COG0357 # Protein_GI_number: 15600757 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Pseudomonas aeruginosa # 10 148 22 160 214 95 37.0 5e-20 MQIISKYFSSLTETQTKQLSMLQDLYNDWNAKINVISRKDIQQLYEHHVLHSLAIAKFIS FKSGTNILDFGTGGGFPGIPLAILFPECRFTLIDGTGKKVRVAQEVATTIGLKNVETKHI RGEEEKGKYDFVVSRAVMPLPELIKIVRKNIAKQQKNVLPNGIICLKGGSLADELKPFSN IVQVTEISNWFTEEWFQTKQVVYLPL >gi|281305386|gb|ADEF01000034.1| GENE 11 12271 - 12915 398 214 aa, chain + ## HITS:1 COG:SMc01587 KEGG:ns NR:ns ## COG: SMc01587 COG0491 # Protein_GI_number: 15966085 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Sinorhizobium meliloti # 1 212 1 210 213 131 38.0 9e-31 MIQVHSLTCNMLQENCYIIHDESKECVIIDCGAFYEQERSAIQQYISKNQLQPVQLIGTH GHIDHHFGNAFLYKEYGLLPTVHQADKFLMEQLNEQAEYFAGVHLTEQMPMPQTYFSEDD KISFGSHTFTILETPGHSPGSVFFYCAEENIAFSGDTLFHYSIGRTDLEGGSMFQMIQSL RMISQLPDMTKIYPGHGVPTTIGTEIAGNPYMDR >gi|281305386|gb|ADEF01000034.1| GENE 12 12931 - 13536 547 201 aa, chain + ## HITS:1 COG:VC1847 KEGG:ns NR:ns ## COG: VC1847 COG0817 # Protein_GI_number: 15641849 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, endonuclease subunit # Organism: Vibrio cholerae # 17 168 3 150 173 113 44.0 2e-25 MQYLEMKHSQQTAADKIILGIDPGTNVMGYGVLRIVKGKPSMLAMGVIDMRKTGDPYLKL GHIFERVTGIIDEYLPDEMAIEAPFFGKNVQSMLKLGRAQGVAIAAAIQHDIPIHEYAPL KIKMSITGQGQASKEQVAGMLQRLLKIDAQEMPSFMDATDALGAAYCHFMQLGKPITDVH YGGWKDFINKNKERVSAGKSI >gi|281305386|gb|ADEF01000034.1| GENE 13 13639 - 14106 389 155 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880738|ref|ZP_06289439.1| ## NR: gi|282880738|ref|ZP_06289439.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 155 2 156 156 268 100.0 6e-71 MKKIIMLLALTCLFTVKATSQEIYKEVNRIMHHAEAIKKDTSKDIEERKVATFKVDAIFY LLTKAAQTDGFTEFELGKQTNAMIDFVNSYIKRLSNSSKKTDKEILMAKFRNATIQNPLF NDPDKEVTHAYVDNNKYITQFSIDTDWVKAYNMVK >gi|281305386|gb|ADEF01000034.1| GENE 14 14121 - 14738 465 205 aa, chain - ## HITS:1 COG:no KEGG:PRU_1304 NR:ns ## KEGG: PRU_1304 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 2 201 182 386 387 164 40.0 2e-39 MEVAIHEQRFEDALKVGENSLRTDSSLVMLRAYVLSKVKRLGEDLFEYPLQGGSEALLPN GESVKMLMLPTNEIQYYLGKSMKPSMKVVPYLEFLEQHHLGKSAIVDYLLCAYLLDKRLD DFVKLLPKYYEINANLPKHYREALILYTHLRSQPAVTYTNNVMDADYEDYQTIAKKYPNT LVRKTKVRDIYGKTYWYYYQYSSNG >gi|281305386|gb|ADEF01000034.1| GENE 15 15332 - 17404 1395 690 aa, chain - ## HITS:1 COG:YEL011w KEGG:ns NR:ns ## COG: YEL011w COG0296 # Protein_GI_number: 6320826 # Func_class: G Carbohydrate transport and metabolism # Function: 1,4-alpha-glucan branching enzyme # Organism: Saccharomyces cerevisiae # 28 687 12 700 704 558 46.0 1e-158 MKKETSQKKRVLEQSALHGYQMKPLELIKNDPYLEPYETAIRGRYEFALATEKRLTRQGK STLSEFASGYLYFGLHRTQDGWVFREWAPNATALYLVGDFNDWQELSTYQAQRIEGTGNW ELQLPLDAIQHGQLYKMHVYWNGGKGERIPAWATRVVQDAKTSIFSAQVWSPETDYEWKD KGYKAVSGPLFIYECHIGMAQDAEKVGTYTEFKENVLPRIVADGYNCIQIMAIQEHPYYG SFGYHVSSFFAPSSRFGTPEELKDLIDTAHQHGIAVIMDIVHSHAVKNELEGLGNLAGDP NQYFLSGSRREHPAWDSLCFDYGRDEVIHFLLSNCKYWLEEFHFDGFRFDGVTSMIYYSH GLGEAFTNYGDYFNGHQDGNAICYLTLANLLIHQVRPHAITIAEEVSGMPGLAAPVSSGG YGFDYRMAMNIPDFWIKTIKELKDEDWKPSSIFWEVTNRRADEKTISYCESHDQALVGDK TIIFRLIDADMYWHFKKGDENAVVHRGIALHKMIRLMTASTINGGYLNFMGNEFGHPEWI DFPREGNGWSYQYAKRQWNLVDNLELGYHYLGDFDKAMILLLKSEKNYQQQEIKEIWHQD GDQILCFMRGDLVFVFNFSPTQSYVDYGFLTPPGSYRVVLNTDAPAFGGNGLNDDSVEHL TVFDALYQSEKKEWLKLYIPARCAMVLRKD >gi|281305386|gb|ADEF01000034.1| GENE 16 17450 - 18583 1075 377 aa, chain - ## HITS:1 COG:slr1485 KEGG:ns NR:ns ## COG: slr1485 COG4642 # Protein_GI_number: 16329198 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Synechocystis # 43 349 38 344 349 159 32.0 1e-38 MKKGLLSLILFILPFQVFAQKLTLGSCTISEGQGANRITGQYKGEMSAGKPQGKGSVKYQ NGNTYEGEFVKGKRQGYGIYTFADGEKYEGQWFQNQQHGRGTYYFANNNKYVGLWFRDYQ QGHGIMYYYNGDKYEGSWYQDKRQGKGTYVFSTGAYYKGQWQNDEKNGKGVFYWGDGSSY DGQWMNNVREGKGVYKYADGDVYSGDWKGDIQDGKGIYKFQNGDLYEGQYVQGERTGEGI FRLANGDKYTGTFKSGERDGLGTMTWKNGDRYTGYWKNDQQNGKGKLTKKNGDVFEGNFK KGKVDGEVIIHYADGSKYKGMYKNGKRNGPAIEETKDGKRFEGSYVDDRRDGKFVEKDRN GKVITQGRYEHGRRYVN >gi|281305386|gb|ADEF01000034.1| GENE 17 18689 - 19435 669 248 aa, chain + ## HITS:1 COG:FN0807 KEGG:ns NR:ns ## COG: FN0807 COG1212 # Protein_GI_number: 19704142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: CMP-2-keto-3-deoxyoctulosonic acid synthetase # Organism: Fusobacterium nucleatum # 1 243 1 238 245 209 45.0 4e-54 MKFIGIIPARYSSTRFPGKPLALLNHKPVIQHVYEQVSAVLHETYVATDDQRIYDTVLSF GGKAVMTSKNHQSGTDRIQEAVEILQPTCDVILNIQGDEPFIQKEQIASLCQCFDDANTQ IATLGKPFENQKAVENPNSPKIVLNNQGYAMYFSRSVIPFIRNKKDEQWFVQFPFLKHLG VYAYRKEVLKQITQLPQSSLELAESLEQLRWLQNGYRIKVAITNIDTIGIDTPEDLQRAE RFLANKQD >gi|281305386|gb|ADEF01000034.1| GENE 18 19985 - 20191 74 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEQIKHRRITKDIVLPLMLRAKAARNFSRMIAINLVHQIGLQATMGRSPNRRKAQDLVQQ LRFPAKTR Prediction of potential genes in microbial genomes Time: Sat May 28 07:05:24 2011 Seq name: gi|281305383|gb|ADEF01000035.1| Prevotella timonensis CRIS 5C-B1 contig00053, whole genome shotgun sequence Length of sequence - 1562 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 225 - 1127 518 ## COG2801 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 1127 - 1507 387 ## gi|288926202|ref|ZP_06420128.1| hypothetical protein HMPREF0649_01639 Predicted protein(s) >gi|281305383|gb|ADEF01000035.1| GENE 1 225 - 1127 518 300 aa, chain - ## HITS:1 COG:PA0257 KEGG:ns NR:ns ## COG: PA0257 COG2801 # Protein_GI_number: 15595454 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Pseudomonas aeruginosa # 23 281 3 262 263 150 35.0 4e-36 MALRKEYPKVSIEKLCSLFGKRRQSFYDKRKEVISERQREHLLIAAVESYRHCCPGIGGV KLHYLLKQEFGEEITRGRDSFLRLLASKGLMLERPKRRHTTDSNHVYKKYPNLIQNTKIQ QVNHVWVADITYIWIVGDVLYLHLITDAYSHAVIGWYLSETLEAENTLKALLMAIKTAGG ENLCGTIHHSDRGVQYACHSYIDTLMKHHIRISMTECYNPTDNAIAERQNGIFKVEWIYR SEMYKNFNHAHQEIAKMIDFYNFKRPHMSIGLKTPIAVYRGEEPGNNLWKNKQNHCTSTE >gi|281305383|gb|ADEF01000035.1| GENE 2 1127 - 1507 387 126 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|288926202|ref|ZP_06420128.1| ## NR: gi|288926202|ref|ZP_06420128.1| hypothetical protein HMPREF0649_01639 [Prevotella buccae D17] # 34 126 3 95 95 100 58.0 3e-20 MTKELKRRTFSDLFKLEVLSEYYSEGVSQLSITRKYGLTNGALLSWIKKWPVDSKVLSLP SEIISSYQMAHPKKEISPEEALHKRISDLEKSLEYERLRNLAYKKLIEIAEAEEGISILK KDGVKQ Prediction of potential genes in microbial genomes Time: Sat May 28 07:05:32 2011 Seq name: gi|281305378|gb|ADEF01000036.1| Prevotella timonensis CRIS 5C-B1 contig00020, whole genome shotgun sequence Length of sequence - 5157 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 170 - 229 3.2 1 1 Tu 1 . + CDS 259 - 2979 2836 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 2 2 Op 1 . + CDS 3089 - 3796 614 ## PRU_0007 hypothetical protein 3 2 Op 2 . + CDS 3793 - 4809 392 ## PRU_0006 putative lipoprotein 4 2 Op 3 . + CDS 4868 - 5155 86 ## Fisuc_0153 hypothetical protein Predicted protein(s) >gi|281305378|gb|ADEF01000036.1| GENE 1 259 - 2979 2836 906 aa, chain + ## HITS:1 COG:BB0035 KEGG:ns NR:ns ## COG: BB0035 COG0188 # Protein_GI_number: 15594381 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Borrelia burgdorferi # 45 680 8 626 626 459 40.0 1e-128 MSKETNQQDDIELEDDELTTDQHSDYQPADRFDASAVHHLSGMYKNWFLDYASYVILERA VPHIEDGLKPVQRRILHSMKRMDDGRYNKVANIVGHTMQFHPHGDASIGDALVQMGQKDL LIDTQGNWGNILTGDRAAAPRYIEARLSKFALDVVFNPKTTDWQLSYDGRNKEPITLPAK FPLLLTQGAEGIAVGLSSKILPHNLNEICQAAIHYLKGEPFTLYPDFPTGGSIDVEKYND GQRGGTLKVRAKIEKLDNKTLVIKEIPFSKTTTTLIDSILKAIDKGKIKARKVDDNTAAE VEIQVHLSPGISSDKTIDALYAFSDCEINISPNCCVIEDNKPVFLTVSDVLRHSVDSTMG LLRKELEIRRNELLEQLFFASLEKIFIEERIYKDKKFEEAKDIDAAVAHVDDRLEPFKPH FIREVTRDDILRLLEIKMHRILKFNKDKANDFIVRTKAEIKEIDHDLAHMTDVTINWFEF IQTKYGKEHPRLTEIRSFDTIEATKVVEANEKLYINRQEGFVGTGLKKDEFVCNCSDIDD IIIFYRDGKYKIIRVADKIFVGKNVIHVQVFKKNDKRTTYNVVYKDGKSGIYFIKRFNVT NFTRDKEYDLTQGKPNSRIVYFTANPNGEAEVIKITLEPDPSKPRQNIFIEKDFSDIMIK SRSAKGNIVSKKPIHRIGLKSHGHSTLGGRKVWFDPDVNRINYEEHGRYLGEFNDDDSIL VVLDNGEFYITDFDANNHYDDNIQIIEKWDDAKVWTAVLFDADNQNYPYVKRFTMEAMKK KQNYLGENPNNKLVLLTEVAYPRLLLTFGGNDSSRPSQEIDVEEFIAVKGFKAKGKRLTT WEIDKIEELEPTRQPVVAQDDEPEEDTNDDEEEENLDPDAGKSQQQVIDEITGQLSLFND EELAPK >gi|281305378|gb|ADEF01000036.1| GENE 2 3089 - 3796 614 235 aa, chain + ## HITS:1 COG:no KEGG:PRU_0007 NR:ns ## KEGG: PRU_0007 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 228 26 254 254 180 41.0 4e-44 MIGYGQASLLDTYLSAETYTGYRIDYLSHIMRTKEESRWMQLKIHQGNFTYAKNRAKNAY EMEGMYQFEYGVFYQWQLFEKHLQLMTGGKMNLHAGALYNGRNGNNPMQAKLGVNIAPAL ILSYALKIQKVPLQLRYELSTPIVGMMFSPNYGQSYYEIFSRGDYDHNIVCTHLGNAPAL KQLVTLDFTLWKTTFRVGYLGDYQQANVNNLKYHSYSNSLVIGLVKKFTLTHILP >gi|281305378|gb|ADEF01000036.1| GENE 3 3793 - 4809 392 338 aa, chain + ## HITS:1 COG:no KEGG:PRU_0006 NR:ns ## KEGG: PRU_0006 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 330 1 330 331 428 57.0 1e-118 MKKLLCILVFSLGLCSCTQDEVFEDTPQGNLEALWKILDEHYCFFEEKRIDWYAIYQRYS HQMHQQLTEYQQFQIMAKMLAELKDGHVNLYTSFDHGRYWKWHEDYPKNFDEILIDHYIG TDYRITAGMRYCILDDHVGYISCRSFEGAIGSGNLDNILFYLAPCNGLIIDIRGNGGGML TSAEQFASRFTNENLLVGYIQHKTGKGHQDFSRMREQILHPAKGVRWQKKVIVLTNREVF SAANEFVKYMKACPQVTIVGDKTGGGAGLPFSSELPNGWGVRFSACPIFDANKKSTEFGI DPDHVVMMKKTDALKGEDTLIEFARKLLSSTHTSTTTK >gi|281305378|gb|ADEF01000036.1| GENE 4 4868 - 5155 86 95 aa, chain + ## HITS:1 COG:no KEGG:Fisuc_0153 NR:ns ## KEGG: Fisuc_0153 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 12 78 16 82 91 99 79.0 3e-20 MKRLFTLFHQWLKSLSFRTGVIVLGMCIPFYILSFAQMLLPISATAKGVWWTILFGLAKT CQYSGLTIIGVEGWKRLKKKLQLEKKSPKRGASEE Prediction of potential genes in microbial genomes Time: Sat May 28 07:05:42 2011 Seq name: gi|281305377|gb|ADEF01000037.1| Prevotella timonensis CRIS 5C-B1 contig00076, whole genome shotgun sequence Length of sequence - 505 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sat May 28 07:05:43 2011 Seq name: gi|281305373|gb|ADEF01000038.1| Prevotella timonensis CRIS 5C-B1 contig00063, whole genome shotgun sequence Length of sequence - 3759 bp Number of predicted genes - 4, with homology - 3 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 88 - 161 84.3 # Asp GTC 0 0 - TRNA 190 - 266 92.6 # Asp GTC 0 0 2 2 Op 1 . - CDS 1343 - 1681 396 ## BF2945 hypothetical protein 3 2 Op 2 . - CDS 1687 - 2025 143 ## BFp0024 hypothetical protein - Prom 2195 - 2254 7.9 + Prom 2211 - 2270 7.5 4 3 Tu 1 . + CDS 2392 - 3567 1180 ## gi|282880755|ref|ZP_06289452.1| conserved hypothetical protein Predicted protein(s) >gi|281305373|gb|ADEF01000038.1| GENE 1 51 - 302 68 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MHPQNRIDFRFIGALVQLVRMPACHAGGHEFESRTHRQQTVQFVHRFGALVQLVRMPACH AGGHEFESRTHRFNTLIQYRVVV >gi|281305373|gb|ADEF01000038.1| GENE 2 1343 - 1681 396 112 aa, chain - ## HITS:1 COG:no KEGG:BF2945 NR:ns ## KEGG: BF2945 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 7 112 4 104 104 104 55.0 1e-21 MKQIGNMKLYSFEEVKDELLGKKGTPERDEHERKVETALHAYRIGEAIKKARVEQNLTQE ELGERIGVKRAQISRLEKGYSISIPTMSKVFKALGVSTASLDLGKIGKIALW >gi|281305373|gb|ADEF01000038.1| GENE 3 1687 - 2025 143 112 aa, chain - ## HITS:1 COG:no KEGG:BFp0024 NR:ns ## KEGG: BFp0024 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 4 110 7 114 115 100 55.0 1e-20 MVTFQLVLLEEAKKFLQNLPKPAYRKIIYNVDRVLRGERNSELFKKLDNSDIWEFRTLYN GIAYRLFAFWDPNTQTLVIVTHGIIKMTQKTPKKEIAKAEAIMKQYFELKNK >gi|281305373|gb|ADEF01000038.1| GENE 4 2392 - 3567 1180 391 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880755|ref|ZP_06289452.1| ## NR: gi|282880755|ref|ZP_06289452.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 391 1 391 391 700 100.0 0 MNKILRISVMSLLALISSITFAQVTFDANVDKGKQTINGSPDQVSKDGVTLSGTDAALAA VHYKTKKGEYRFYASSSVTLSATDKNIVKVEMTCSVDKRHAASNFAAQEGLVIAKETATW TGKATSITFKTSKQVRAYKVVVTLEGGAVTPTPEVQTVDNIAAFKALSDGTTAQLKLNNA QVLYTWTSNKGNTSTYIHDATGALLLYNSGLTLEENKMLNGEVTLKLTDYNGLPKGVNTD KTNADGLTITDGTPAKPKVITPDKAGENLSELVQVEGVTIQSEQSGKYTNYYAHVGDQKI QLYNGFHLDAYKDLSSFEGMQNQTVKGIVSMFRGQPQITIINIEKTTGIDNVNQIDSAIN DNAPMYNLAGQRVGKEYKGVVIQNGKKFINR Prediction of potential genes in microbial genomes Time: Sat May 28 07:06:30 2011 Seq name: gi|281305290|gb|ADEF01000039.1| Prevotella timonensis CRIS 5C-B1 contig00084, whole genome shotgun sequence Length of sequence - 100949 bp Number of predicted genes - 80, with homology - 76 Number of transcription units - 38, operones - 19 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 40 - 1575 925 ## Cpha266_0325 transposase, IS4 family protein - Prom 1797 - 1856 8.9 - Term 1982 - 2023 0.8 2 2 Op 1 . - CDS 2072 - 2686 353 ## PG1000 hypothetical protein - Prom 2706 - 2765 1.8 3 2 Op 2 . - CDS 2769 - 4181 948 ## COG0593 ATPase involved in DNA replication initiation - Prom 4235 - 4294 9.0 - Term 4526 - 4573 6.7 4 3 Op 1 . - CDS 4608 - 5510 658 ## PRU_1284 Mce-like protein 5 3 Op 2 . - CDS 5516 - 6832 997 ## COG0860 N-acetylmuramoyl-L-alanine amidase 6 3 Op 3 . - CDS 6879 - 7256 229 ## COG1539 Dihydroneopterin aldolase 7 3 Op 4 . - CDS 7266 - 9851 2268 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 9895 - 9954 8.0 8 4 Tu 1 . + CDS 10747 - 11484 445 ## COG0778 Nitroreductase + Prom 11890 - 11949 4.3 9 5 Op 1 . + CDS 11980 - 14361 2134 ## Rmar_1936 hypothetical protein 10 5 Op 2 . + CDS 14372 - 15316 551 ## Csal_1798 OmpA/MotB 11 6 Tu 1 . + CDS 15731 - 16624 567 ## COG0320 Lipoate synthase + Term 16733 - 16789 7.2 - Term 16721 - 16763 1.2 12 7 Tu 1 . - CDS 16827 - 19301 2087 ## COG0787 Alanine racemase - Prom 19369 - 19428 5.9 - Term 19373 - 19409 -0.3 13 8 Tu 1 . - CDS 19499 - 19684 102 ## + Prom 19605 - 19664 3.7 14 9 Op 1 4/0.000 + CDS 19694 - 21103 1425 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 15 9 Op 2 . + CDS 21110 - 22450 1244 ## COG0477 Permeases of the major facilitator superfamily + Prom 22513 - 22572 3.5 16 10 Op 1 . + CDS 22614 - 23468 535 ## BT_3618 hypothetical protein 17 10 Op 2 . + CDS 23480 - 24301 832 ## COG2103 Predicted sugar phosphate isomerase 18 10 Op 3 . + CDS 24329 - 25072 475 ## COG2755 Lysophospholipase L1 and related esterases + Term 25201 - 25245 8.8 - Term 25192 - 25230 1.4 19 11 Tu 1 . - CDS 25275 - 25385 71 ## - Prom 25432 - 25491 4.1 20 12 Tu 1 . - CDS 25505 - 26320 917 ## PRU_0130 hypothetical protein - Prom 26467 - 26526 7.5 + Prom 26375 - 26434 5.5 21 13 Tu 1 . + CDS 26502 - 28244 817 ## ZPR_0099 membrane protein + Term 28274 - 28326 13.4 - Term 28268 - 28307 9.3 22 14 Tu 1 . - CDS 28348 - 30858 2037 ## PRU_0128 hypothetical protein - Prom 30882 - 30941 5.6 + Prom 30565 - 30624 2.0 23 15 Op 1 . + CDS 30871 - 31653 442 ## COG0775 Nucleoside phosphorylase 24 15 Op 2 . + CDS 31739 - 32218 580 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis 25 15 Op 3 . + CDS 32288 - 32851 588 ## gi|282880782|ref|ZP_06289478.1| hypothetical protein HMPREF9019_2074 + Term 32972 - 33019 3.2 - Term 32863 - 32911 9.9 26 16 Op 1 . - CDS 33017 - 34114 1207 ## COG1940 Transcriptional regulator/sugar kinase 27 16 Op 2 . - CDS 34171 - 34908 555 ## PRU_1474 hypothetical protein - Prom 35065 - 35124 6.1 + Prom 34531 - 34590 3.8 28 17 Tu 1 . + CDS 34793 - 35062 150 ## + Term 35086 - 35135 2.1 - Term 35127 - 35176 4.7 29 18 Tu 1 . - CDS 35184 - 37325 2231 ## PRU_0859 peptidyl-prolyl cis-trans isomerase-like protein - Prom 37349 - 37408 5.0 30 19 Op 1 . - CDS 37508 - 38785 874 ## COG1253 Hemolysins and related proteins containing CBS domains 31 19 Op 2 . - CDS 38797 - 39411 346 ## PRU_0861 hypothetical protein 32 19 Op 3 . - CDS 39476 - 40777 1003 ## PRU_0862 hypothetical protein - Prom 40797 - 40856 5.3 + Prom 40719 - 40778 4.7 33 20 Op 1 . + CDS 40922 - 42076 688 ## PRU_0863 hypothetical protein 34 20 Op 2 . + CDS 42073 - 43437 842 ## COG1524 Uncharacterized proteins of the AP superfamily + Prom 43773 - 43832 4.8 35 21 Tu 1 . + CDS 43856 - 47188 3359 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 36 22 Tu 1 . + CDS 47353 - 48144 191 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 - Term 48016 - 48049 -0.6 37 23 Op 1 . - CDS 48161 - 49702 464 ## COG0658 Predicted membrane metal-binding protein 38 23 Op 2 . - CDS 49699 - 50409 442 ## COG5587 Uncharacterized conserved protein 39 23 Op 3 . - CDS 50413 - 51063 519 ## COG0177 Predicted EndoIII-related endonuclease - Prom 51083 - 51142 3.9 - Term 51148 - 51203 18.0 40 24 Op 1 31/0.000 - CDS 51227 - 52372 812 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 41 24 Op 2 . - CDS 52389 - 53951 940 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 42 24 Op 3 . - CDS 53964 - 54188 147 ## PGN_1040 hypothetical protein - Prom 54251 - 54310 7.3 43 25 Tu 1 . + CDS 55097 - 55705 561 ## PRU_1474 hypothetical protein + Term 55761 - 55820 7.5 44 26 Op 1 . - CDS 55830 - 56933 937 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 45 26 Op 2 . - CDS 56930 - 57868 534 ## PRU_0177 hypothetical protein 46 26 Op 3 . - CDS 57861 - 58271 376 ## PRU_0176 polysaccharide glycan isomerase 47 26 Op 4 . - CDS 58285 - 59433 1288 ## COG1088 dTDP-D-glucose 4,6-dehydratase 48 26 Op 5 . - CDS 59430 - 59696 266 ## gi|282880806|ref|ZP_06289502.1| hypothetical protein HMPREF9019_2098 49 26 Op 6 . - CDS 59704 - 60210 374 ## PRU_0172 phosphodiesterase (EC:3.1.-.-) 50 26 Op 7 . - CDS 60218 - 60859 676 ## PRU_0171 hypothetical protein 51 26 Op 8 . - CDS 60831 - 62219 1075 ## COG0534 Na+-driven multidrug efflux pump - Prom 62379 - 62438 6.6 - Term 62387 - 62438 9.3 52 27 Op 1 . - CDS 62484 - 63416 946 ## gi|282880810|ref|ZP_06289506.1| hypothetical protein HMPREF9019_2102 53 27 Op 2 . - CDS 63457 - 63939 405 ## gi|282880811|ref|ZP_06289507.1| hypothetical protein HMPREF9019_2103 54 27 Op 3 . - CDS 63974 - 64867 588 ## COG3016 Uncharacterized iron-regulated protein 55 27 Op 4 . - CDS 64851 - 67502 1384 ## COG0612 Predicted Zn-dependent peptidases - Prom 67659 - 67718 4.4 - Term 67583 - 67621 3.1 56 28 Tu 1 . - CDS 67790 - 69007 1094 ## BF3446 putative lipoprotein - Prom 69029 - 69088 8.3 57 29 Op 1 . - CDS 69111 - 70520 1080 ## BF3445 hypothetical protein 58 29 Op 2 . - CDS 70525 - 73647 1751 ## BF3444 hypothetical protein 59 29 Op 3 . - CDS 73684 - 74583 630 ## COG2138 Uncharacterized conserved protein - Prom 74608 - 74667 7.5 + Prom 74777 - 74836 7.8 60 30 Tu 1 . + CDS 74865 - 76160 876 ## COG1570 Exonuclease VII, large subunit 61 31 Op 1 . - CDS 76268 - 76819 340 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 62 31 Op 2 . - CDS 76821 - 77780 835 ## BT_2509 putative transcriptional regulator - Prom 77800 - 77859 4.0 63 32 Tu 1 . - CDS 77889 - 79988 1510 ## COG0464 ATPases of the AAA+ class - Prom 80129 - 80188 7.7 + Prom 80478 - 80537 5.1 64 33 Op 1 . + CDS 80708 - 80950 93 ## 65 33 Op 2 . + CDS 80880 - 81074 257 ## gi|282880823|ref|ZP_06289519.1| putative exodeoxyribonuclease VII, small subunit + Prom 81143 - 81202 4.9 66 34 Op 1 . + CDS 81331 - 82101 694 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 67 34 Op 2 . + CDS 82136 - 83236 955 ## COG0489 ATPases involved in chromosome partitioning + Term 83366 - 83411 0.6 68 35 Op 1 22/0.000 - CDS 83453 - 84715 798 ## COG0842 ABC-type multidrug transport system, permease component 69 35 Op 2 9/0.000 - CDS 84774 - 85937 702 ## COG0842 ABC-type multidrug transport system, permease component 70 35 Op 3 13/0.000 - CDS 85983 - 86972 961 ## COG0845 Membrane-fusion protein 71 35 Op 4 . - CDS 86980 - 88467 1161 ## COG1538 Outer membrane protein 72 35 Op 5 . - CDS 88486 - 89358 760 ## PRU_1259 hypothetical protein - Prom 89451 - 89510 7.2 + Prom 89975 - 90034 7.3 73 36 Tu 1 . + CDS 90179 - 90628 499 ## COG1225 Peroxiredoxin + Term 90760 - 90798 -0.6 - Term 90717 - 90763 -0.8 74 37 Op 1 . - CDS 90838 - 91680 474 ## gi|282880832|ref|ZP_06289528.1| hypothetical protein HMPREF9019_2124 75 37 Op 2 . - CDS 91722 - 92288 491 ## gi|282880833|ref|ZP_06289529.1| hypothetical protein HMPREF9019_2125 76 37 Op 3 . - CDS 92316 - 95789 2393 ## Slin_3305 hypothetical protein 77 37 Op 4 . - CDS 95824 - 97356 902 ## Slin_3304 hypothetical protein 78 37 Op 5 . - CDS 97413 - 97859 160 ## gi|282880836|ref|ZP_06289532.1| hypothetical protein HMPREF9019_2128 79 37 Op 6 . - CDS 97934 - 99427 1228 ## Slin_3302 hypothetical protein - Prom 99573 - 99632 7.6 - Term 99471 - 99513 -0.9 80 38 Tu 1 . - CDS 99749 - 100336 348 ## PRU_1792 hypothetical protein Predicted protein(s) >gi|281305290|gb|ADEF01000039.1| GENE 1 40 - 1575 925 511 aa, chain - ## HITS:1 COG:no KEGG:Cpha266_0325 NR:ns ## KEGG: Cpha266_0325 # Name: not_defined # Def: transposase, IS4 family protein # Organism: C.phaeobacteroides # Pathway: not_defined # 24 464 47 500 554 256 33.0 2e-66 MFVRKKINRSGTISVVVVSKAHGKFTEVKKFGVAKSEEEADELFQKAKLWLHTHDGQQEF DFNNLRSKVLEETTRVVENIDSVLINGTQLLLNQVYDSIGFNRIPDEILRHLVIARVSQP KSKLATVDYLKSYYDEDVDLNHIYRYMDKLYSTQMELAEQISVKHTQKIFGGKIGLLFYD VTTLYFETSKTDVLREPGFSKDGKTAESQVVLGLLVSDGGYPLSYSLFNGSQYEGFTMIP MIDDFKQRFTLGDDFVIVADSGLMNKNNVALLQNAGYKYILGARIRNERNNIRQWILSLD KKDNASYEMYRQNGERLIVCYSERRAKKDAYNRTRGIARLRKAYKSGRITKQQVNKRGYN KFLEISKDIEVTISQEKIEEDCKWDGWKGYITNTELDAERVIAQYHGLWVVERSFRISKG TLEMRPMFHFTERRIEAHVCICFIAYKVYKELERLIGINKIAMSVDHVLDTAKTVTTIRI RMPENNTYFTKTLFLTEKHLAIRPLFQVVNK >gi|281305290|gb|ADEF01000039.1| GENE 2 2072 - 2686 353 204 aa, chain - ## HITS:1 COG:no KEGG:PG1000 NR:ns ## KEGG: PG1000 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 201 1 201 210 270 65.0 2e-71 MSVDNILDRVLEVEHGFQHILDGADEILSAYAKAQCFEVALTLFEHEAYQARMLATTILG RLTTEDNSALPFLKERISTDDNWRVQEMLAKAFDEVCKHRGYEASLPLIEEWLNDNNPNV IRAVTEGLRIWTSRPFFKENPSVAIALISKHKAHESEYLRKSVGNALKDISKKHAELIRQ EVEQWDLSNPRVLFTYKLATKLLK >gi|281305290|gb|ADEF01000039.1| GENE 3 2769 - 4181 948 470 aa, chain - ## HITS:1 COG:lin0001 KEGG:ns NR:ns ## COG: lin0001 COG0593 # Protein_GI_number: 16799080 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Listeria innocua # 4 467 3 445 451 255 30.0 1e-67 MNVSPNEAWDKTLTLIRENVSEQQYNTWFKPIVYESFEESTRTLLVQVPSPFVYEYLEEN YIDLLSKVLRRTFCDQIRLKYRIVTDQEHHLTQDVEAEQTDLSVKTQLAKTRVNESPTTL DAAQPQQLDPNLNPHQTFNNYIEGDSNKLPRSVGLSIAEHPRKTQFNPMFVYGPSGCGKT HLINAIGMRTKQLYAQKRVLYVSARLFQVQYTNAVLQNSINDFINFYQTIDLLIVDDIQE WMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFSCGLIAELEKPNV QLCIDILNSKIRKDGLQILEDVVQFIAETANGSVRDLEGVINSLLAYSVVYNSTVDMRLA QRVIQRAVKIDDKPLTIDEILEKVCNHFNVSVSAVNGRSRKQDLVTARQVSMYLAQKYTK MPASRIGKLVGGRDHSTVIHSCSRVEQRLQVDSMFSNELMSIENSFKLKN >gi|281305290|gb|ADEF01000039.1| GENE 4 4608 - 5510 658 300 aa, chain - ## HITS:1 COG:no KEGG:PRU_1284 NR:ns ## KEGG: PRU_1284 # Name: not_defined # Def: Mce-like protein # Organism: P.ruminicola # Pathway: not_defined # 1 300 1 300 300 293 47.0 5e-78 MRNHIQEIKIALVAVAGLVALFFGMKFLKGSNLLSSSDTYYFVFNDISGLTESSPIFAAG YQVGRIKKIYFDYSHAEEIKVLAEVDRKMKIPVGSTASISSDVLGNIKVTLNIAPHRGQY VQPGGVISGSIDTGTVGKMTEMVPTIKQILPKLDSVMFHLNALLADPALAHSIHNIDEIT NNLSTSSKQLHILLSNVNREVPGIVSKTNLVLTNTEQFTDNLRKIDVASTMTKVDEAMAD VQEITAKMNNNSGTFGLLLKDPTLYYNLNQTMKNIDSLAVNLRQQPKRYVHFSLFGRKNK >gi|281305290|gb|ADEF01000039.1| GENE 5 5516 - 6832 997 438 aa, chain - ## HITS:1 COG:CC1876 KEGG:ns NR:ns ## COG: CC1876 COG0860 # Protein_GI_number: 16126119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Caulobacter vibrioides # 25 237 173 369 395 103 30.0 6e-22 MNKKIQFCLFTMMMFAVSCMAANKKFTLVIDPGHGGKDHGAIGVYSREKDLTLKFGLAFG QLVEQRCPDVKVIYTRKTDVFIPLVTRAEIANKNHADLFISVHINALAGGRKVRGVQTYT LGQGQNTGRKGIIKNLEVAKRENSVILLEDNYQQTYQGFDPTSPESNIMFEFIQDVNMQK SVELAKYMQQHICEATGLKDMGAHQNNLAVLRLSSMPGCLLELGFISTPEEELFMNAPQA ADMYARGIFNAFAQYKNRYYEGLTVPYKAPKKVTPTIPEIVPQVFKQKEETKTKKAKRKR EPTPVLSKKEEKKVEETTNTDSRPVTETSKPEVIAETRDDIPAPVNPDVPIFKVQILSSS RKIALNDETLKGLKGCECYQDGTLWKYTYGSSTNYNEIRKLQKELTNRFPDAFIIAFKGG QRTNVNEAIQTFLQLKKK >gi|281305290|gb|ADEF01000039.1| GENE 6 6879 - 7256 229 125 aa, chain - ## HITS:1 COG:SA0473 KEGG:ns NR:ns ## COG: SA0473 COG1539 # Protein_GI_number: 15926192 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Staphylococcus aureus N315 # 8 118 5 116 121 79 36.0 1e-15 MKIQSSYIFLRNLRFHAFHGMLPQECITGNDYLVNVRIKFPLSDVFQTDCIADTISYADA YECIRREMEKPSQLLEHVAGRIGRCLIDSYPVIEEVDIEIMKINPPMGADCDGAGVELHL TNGKN >gi|281305290|gb|ADEF01000039.1| GENE 7 7266 - 9851 2268 861 aa, chain - ## HITS:1 COG:TM0118 KEGG:ns NR:ns ## COG: TM0118 COG0209 # Protein_GI_number: 15642893 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Thermotoga maritima # 104 860 131 826 827 252 28.0 2e-66 MEQAKTYSFEEAYQEALQYFSGDELAARVWVNKYAMKDSFGHIYEKSPKDMHWRIANEIV RIENKYENPLSAQEVFELLDHFKYIIPAGSPMTGIGNDHQVASLSNCFVIGLDGDADSYG AIMRIDEEQVQLMKRRGGVGHDLSHIRPKGSPVNNSALTSTGLVPFMERYSNSTREVAQD GRRGALMLSVSIKHPDSEAFIDAKMTEGKVTGANVSVKIDDEFMQAAIDDKPYVQQFPVD SDEPSMKKEIAAKSLWEKIVHNAWKSAEPGVLFWDTILRESIPDCYADLGFRTVSTNPCG EIPLCPYDSCRLLSINLYSYVVNPFTSDAYFDMEKFAKHVQIAQRLMDDIVDLELEKIDC ILEKIKLDPQSEEVKETERHLWEKIKRKSGQGRRTGVGITAEGDMLAAMGLRYGTKEATE FSVNIHKTLALNAYRSSVTMAQERGAFEVFDAKREANNPFLLRIKEADPQLYEDLQKYGR RNIACLTIAPTGTTSLMTQTTSGIEPVFMPVYKRRRKVNPSDTDVHVDFVDEVGDSFEEY IVYHKKFLEWMKVNGIDTTKRYTQEEIDQLVEQSPYYKATANDVDWLEKVKMQGAIQKWV DHSISVTVNLPHDVDEALVNRLYVEAWKSGCKGCTIYRDGSRAGVMISVSKKDTKEEPAE QAKDNDMEERVKMPCQHPEVTEVRPKELECDVVRFQNNKEKWVAFVGLLDGYPYEIFTGL QDDDEGIVLPKSVTKGKIIKQKQEDGPSRYDFQFKNKRGYKTTVEGLSEKFNPEYWNYAK LISGVLRYRMPIDHVINLVGSLQLKDESINTWKNGVERALKKYVDDGTEAKGRKCPVCGH ETLIYQEGCLICKNCGASRCG >gi|281305290|gb|ADEF01000039.1| GENE 8 10747 - 11484 445 245 aa, chain + ## HITS:1 COG:BH1048 KEGG:ns NR:ns ## COG: BH1048 COG0778 # Protein_GI_number: 15613611 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Bacillus halodurans # 4 194 9 201 244 99 29.0 5e-21 MKTINTRRSIRVYQNRDVDNDLLNRLLSEATHTQTMGNLQLYSVVITRNNENKKKLSPVH FHQPMVESAPVVLTFCADFRRTTKWAECRKAQPGYNNFLSFLNAMTDTLLFCQTFCQLAE EEGLGLCYLGTTLYSPEKIIDILKLPKLVMPIATITLGWPDESPAVSDRLPLSAIVHHET FEDYTPKRIDESYKHKENLPENIHFCEVNHKETLAQVFTDLRYTQKDNEAMSENFLNTLK QQGFL >gi|281305290|gb|ADEF01000039.1| GENE 9 11980 - 14361 2134 793 aa, chain + ## HITS:1 COG:no KEGG:Rmar_1936 NR:ns ## KEGG: Rmar_1936 # Name: not_defined # Def: hypothetical protein # Organism: R.marinus # Pathway: not_defined # 25 409 21 390 754 107 25.0 2e-21 MKKSMTRIFSLVGILLLGSLKSTAQVNDVSFIVSPAAEYIWWDKDLSIDNMPLYGGKLGF GFGPLFELRAFYLRGNDANAQVRRQNWLTDEGWAKNIRDTKVDLIKYGGEIKLNFWKNSY FAPYLTAGGGVQQMKYNTYADDAVMTDVPMKDEQLFASLGVGAKFNLSPRAALSIEAKNT MFNASKGSYLMRPEYDKSNGGNHLYNWTAGATLDFYLGGRADDSNDAISREYRNMFSDGF KGLKFVVEPAVAYLDFDKDMPMTDTYLMGGSAGFDLSSLVGIRGFYYQANKEADKLSLSF SKNLALYGGNIITRLNFPRGINPYLQLGGGYMKIGDKYADEKGNTTAESSPFVFGGAGIE IPITKYVALFGTANAVFTSEKGVKEENIQSPDHINTSMMYNAGLRFNLGLAADGKKKYNK YVNRRLDAQREASNEELNDLRSRYDERIDEYDSQIADYNEKISNYDQQMAQYDERVSKLK ADYEKRINKLDKDLESALKANDTIRVAEIARLKTRHQQELENIENDEMSIKRKLVNELGE SKGNNVKMTRSQLNELVNRIAREARNDARNYNYDYDYDYDVNYAQPQESYRSVAPLQRIA PVQNNETEQLKRELRIMNEKLNKVISQRNNAVGTTIVTDGSGVVANELAPATVYNSGAYH PAANSGLKLNRIGIFTGVGFGDLTSWNVGVRGYMQVASTNLDFVPELYAAMADNSGMGVS ANIIYNFKIASLGKFEPYAGFGLGIFHGKNTHFGSNLLLGVSTEMLGGKVFVDYSARSLT KQNQVAVGYSFIF >gi|281305290|gb|ADEF01000039.1| GENE 10 14372 - 15316 551 314 aa, chain + ## HITS:1 COG:no KEGG:Csal_1798 NR:ns ## KEGG: Csal_1798 # Name: not_defined # Def: OmpA/MotB # Organism: C.salexigens # Pathway: not_defined # 210 310 184 290 294 73 38.0 6e-12 MQKKYYLAALAFLALPIMYADATPVVSVAPAADDTIIVDRDELIDVLRRVATSEIRNQNR PMRNMRQQTRGRSYRQISPAQTIPVYNSSSRRIEYIPVYVPQVGRVQGFQPYLPTQNLQP KSSDTKESQEVKQLQEQIDQLQKQIEVLSQTVKDPTLRQQVESMVKQQNALCAKKDTVIM RAPANNPTEQCCQEKALVEPAHPVKVTPFDTNLRQVFFEISSKQLSKEAEHTLDAVVDVL KNNRDLKVELTGFSSNDGPKAFNKDLAMKRMNSVRSYLVNHGVNTNQISALSYGIDKKSE MKTYARRVELCISL >gi|281305290|gb|ADEF01000039.1| GENE 11 15731 - 16624 567 297 aa, chain + ## HITS:1 COG:BH3435 KEGG:ns NR:ns ## COG: BH3435 COG0320 # Protein_GI_number: 15615997 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Bacillus halodurans # 10 297 8 300 303 261 46.0 1e-69 MTDVHNKPKLRKPRWLYTKIEGGERYGLVESTIEQGGLHTICTSGQCPNKGHCWKNGTAT FMILGDRCTRACRFCATQTGHPLPPDEQEPIKIARAVKAMNLKHAVITSVDRDDLPDKGA AQWAKTISETRNLCPDTIIEVLIPDYRGELLQKVLAAKPDIVAHNLETVERLTPSVRSRA TYQNSMEVLKEIAATGVMTKTGIMVGLGETQDEVLTTIHEAYLAGCRMLTIGQYLQPSPK QLDVQEYVHPDIFSLYKAKALEMGFANVESAPLVRSSYMAEESYVRMMLRKRAKTGS >gi|281305290|gb|ADEF01000039.1| GENE 12 16827 - 19301 2087 824 aa, chain - ## HITS:1 COG:CAC0492 KEGG:ns NR:ns ## COG: CAC0492 COG0787 # Protein_GI_number: 15893783 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Clostridium acetobutylicum # 458 821 3 373 386 206 35.0 2e-52 MIYSIEEVITQIGAQRYGSKSAQIGFLLTDSRSLCFPEETLFFALKTDRNDGHHYISELY RRGVRNFVVSSVPVDYEHLYPEANFLRVLNPCKALQRLAKCHREEFHIPIVGITGSNGKT MVKEWLYQLLSPQFFVTRSPRSYNSQVGVALSVWLLNEETQVGIFEAGISEPGEMAALQH MIQPTIAVLTNIGDAHQENFASMEDKCREKMILLKDAEILVYPADDPIIQKVVNDSDLRG KKLAWSMSDKSAPFYIKTVEKKATMTTITYVYHEHEDWFSIPFIDEASVADAIECAVVAL EMGMSMSALDERMQQLEPVAMRLEVKEGQHGCTLINDSYNSDINSLDIALDFMNRRPDQQ NRSRTLIISDIDQSGRQPSELYKEVSNLAVKRGVSQLIGIGQQLSANRNLIEMPKKFFFP TVEAFEKSEVFAQLHDEVILLKGARRFNFDQLTERLERKVHETILEVNLNAIVDNLNYYR SLLKHGTKLVCMIKADAYGAGAVEVAKTLQDHRVDYLAVAVADEGVTLRKNGITANIMVM NPEMSSFKMLFDYDLEPEVYSFRLLDALVKAAEKEGITDYPVHIKLDTGMHRLGFDPQKD MQTLISRLKRQNAIIPRSVFSHFVGSDSDDFDSFSAQQFALFDEGSKLLQAAFTHKIIRH MDNSAGIEHFPERQLDMCRLGLGLYGINPRTNQVIHQVSTLRTTILQKREVKAGDTVGYS RKGTIAHDSVIAAIPIGYADGLNRRLGNRHGYCLVNGQRAPYVGNICMDVAMIDVTGIDC KEGDRVEIFGEHLPVTVLSDILETIPYEVLTSVSNRVKRVYYHD >gi|281305290|gb|ADEF01000039.1| GENE 13 19499 - 19684 102 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLLLNAIDILRGMFFPLPNSVCCCSPKIKSTKELLQVSVLKLTIDRVDSTSKCNYVCKF K >gi|281305290|gb|ADEF01000039.1| GENE 14 19694 - 21103 1425 469 aa, chain + ## HITS:1 COG:jhp0094 KEGG:ns NR:ns ## COG: jhp0094 COG0463 # Protein_GI_number: 15611164 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Helicobacter pylori J99 # 227 363 2 126 260 60 34.0 5e-09 MKQIDCFLPYIDESQYKKQQKAFEEVSAFVTLHALKDSLYQTTTIQEIAKETRGEYCLLI TKSTPLKLHYLALERLQQIAEDTKAGLVYADHYQLKDDKCVNAPVIDYQQGSLRDDFDFG SVLLFNSKALKESCQRMKNSYQHAALYDLRLKLSQRYDLVHANEYLYTEIEEDNRKSGEK QFDYVDPRNQDRQKEMESACTEHLKEIGGYLKPSFKTVDFVHDAFEFEASVIIPVKNRET TIEAAIRSVLAQKANFKYNILVIDNHSTDGTTEKIDQYKNDERVVHIVPERNDLGIGGCW NLGIHHPKCGKFAVQLDSDDLYQDENTLQTIVNAFYEQQCAMVIGTYRMTDFDLNTLPPG VIDHREWTPENGRNNALRINGLGAPRAFYTPIARQIGFPNTSYGEDYAMGLNISRHYQIG RIYDVLYLCRRWGGNSDAALSIERVNANNLYKDRIRTWELQARINLHKE >gi|281305290|gb|ADEF01000039.1| GENE 15 21110 - 22450 1244 446 aa, chain + ## HITS:1 COG:NMB0360 KEGG:ns NR:ns ## COG: NMB0360 COG0477 # Protein_GI_number: 15676275 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 19 439 25 421 427 109 27.0 9e-24 MRQLTKNISPWAWIPTLYFAEGIPYFIVNNISVIMFTKMGVPNGDMAMFTSLLYLPWVIK PLWSPFVDILRTKRWWIVIMQALMSLAFVLLTFTLPHPSPDIIGSGNTPVSMFTLTLVLF IITAFASATHDIAADGFYMLALNPSQQSFFVGIRSTFYRFASIFGQGVLVFVAGYLELHT GNIPLSWMITLGITGVLFTIITIYHTFFIPYPQQDKGKVGATGVHAKDIVSEFGRTFATY FKKPGLWIAIAFMLLYRLPEAFLLKMAVPFLVDSGADGGLSMSTQEVGLVYGTIGVIALT IGGIIGGIAASNWGLKKSLWPMAACMTLPCLTFVYLSMFLPHNIIVISACVAVEQFGYGF GFTAYMLYMMYFSEGEFKTAHYAICTAFMALSMMIPGMFAGYLQEWLGYEHFFWLVIACC AATVMVTLLIKVDPEYGRKETHKNEA >gi|281305290|gb|ADEF01000039.1| GENE 16 22614 - 23468 535 284 aa, chain + ## HITS:1 COG:no KEGG:BT_3618 NR:ns ## KEGG: BT_3618 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 6 282 2 278 283 324 54.0 3e-87 MNPSTLLIADSGSTKTDWRIIQNGKETHAIATKGMNPFFQTPSEMETELRSSLLPHLPVT PFDAIYFYGAGCTPERSQVVAQTLQQCIKVKDCIEVHSDLLAAARGLCGHQPGIACILGT GSNSCFFDGTAITANVPALGFILGDEGSGANLGKRLVGDLLKNQLDDELKNKFFCQFNTS MAEVIDKVYRQPFPSRYLASLNVFLEQNRTHEGIHRLLVRAFQDFIERNVMQYSYQKYAM NCIGTIAVVYQSELAEAADKCGVKLGKICKSPTEGLIQYHTETH >gi|281305290|gb|ADEF01000039.1| GENE 17 23480 - 24301 832 273 aa, chain + ## HITS:1 COG:YPO2925 KEGG:ns NR:ns ## COG: YPO2925 COG2103 # Protein_GI_number: 16123112 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Yersinia pestis # 15 272 17 288 295 244 49.0 1e-64 MSFQKITEETSLYNDLENKSVTEILNDINTEDQKVAIAVQKTIPQVAKLVEQIVPRMKRG GRIFYMGAGTSGRLGVLDASELPPTFGVPKTLVIGLIAGGDTALRNAVENAEDNDEHGWN ELAEHNINCNDTVIGIAASGTTPYVVGALRDAREHGILTACITSNPESPMAAESDIAIEM IVGPEYVTGSSRMKSGTGQKMILNMISTAVMIKLGRVKGNKMVNMQLTNQKLIDRGTRML VDLLGLDYGKAKNLLILHGSVEKALEEAQKRHQ >gi|281305290|gb|ADEF01000039.1| GENE 18 24329 - 25072 475 247 aa, chain + ## HITS:1 COG:all0976 KEGG:ns NR:ns ## COG: all0976 COG2755 # Protein_GI_number: 17228471 # Func_class: E Amino acid transport and metabolism # Function: Lysophospholipase L1 and related esterases # Organism: Nostoc sp. PCC 7120 # 95 246 89 243 249 94 32.0 3e-19 MKKIFLLLCIALVATVTQVHAMDRAACHAQKKCTAQTQSVTDSILNAPQKYHEHYYERLQ RFDHQPSIQCTDIVMLGNSLTEGGGDWNQRLGKNNIVNRGISGDIAMGIYDRLYQILPYH PAKIFLLVGVNDVSHDLSTDSIVHMIQTVITAIRTQSPQTQLYVQSMLPIRESTGRWKRL IGKTPQIPEINAKIEVWTAEHGIPYINLFPYFTETDTAIMRTELTYDGLHLTEAGYAIWT QLLKKFL >gi|281305290|gb|ADEF01000039.1| GENE 19 25275 - 25385 71 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLVAFMFHLYNKQIDKELQGIDAMGKCYVLLPPML >gi|281305290|gb|ADEF01000039.1| GENE 20 25505 - 26320 917 271 aa, chain - ## HITS:1 COG:no KEGG:PRU_0130 NR:ns ## KEGG: PRU_0130 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 5 266 1 292 297 337 56.0 2e-91 MYGRMQFRTIVQIEPPTFTIAPFEHIFLVGSCFADNIGKRFIEEKFNAIVNPYGVMYNPA SILHTVERAKVNPQVAVFTLGTNHVYVFKETSEIVDNCQKRPQRLFREEELSIDACTDYL SKAIECLQKRNPAVRIILTVSPIRYAKYGYHGSQLSKATLLLAANQLTQRYPDTVTYFPA YEIVNDELRDYRFYQEDMLHPSYQAVSYIWERFSETYLSDEAKKFIEDWRPVKAALAHRP FDANSVAYQDFVRQTHERIQALEKKWGVSLQ >gi|281305290|gb|ADEF01000039.1| GENE 21 26502 - 28244 817 580 aa, chain + ## HITS:1 COG:no KEGG:ZPR_0099 NR:ns ## KEGG: ZPR_0099 # Name: not_defined # Def: membrane protein # Organism: Z.profunda # Pathway: not_defined # 128 388 120 377 570 111 28.0 9e-23 MKKLSKPSLKDWRQQLTALVLRFPTSIFFCIITCASWIFLNHKFQEATDINTMMVFLMLY PVTALLLSLQLHLWTEEWQQQKRAWQVHLGIQVVWLGICALLANSYTNTIEQSIAIVVLA TVMGVGWFTLPYYQQRNDRPAIYFLLNLIGGCSLAFVISLGVLIGLSLLLNSLTSLFLLD IKYTLYLDLSAVCFTLIAPVLLMASLPQGANKFSECNWLQNRFGNGVIHYLLIPLHMAYT ITLYAYTAKIIITWELPNGWVSWLVSVLMLLTVTIVFLLYPIHHEKEVKRFDQFIVRYLP VIVLPLLVLMSVGIYRRFSDYGVTIYRLYLLIFNVWCYAVCLGLMVYRSRRVIWIINSFL IVWALISIFPYNIASYTRNKLTSEVKHLAAQQPDIKLPMNSVAYDKLLQGLSFIDAKKTD GKLSYLRTTYGMKCTEELLQPKVETFGYEFDKKVKNNKGKPASVQSMVSYECNFEKSDAL VSIPAGYHHVASIAAYDEDNVQGYLQGDSMRIVLKDNINGQKINDEYLVSLSDLEAMANT EKTHDIQLKGKKTQLTITYFLLRYRKEVERLHIVGYVFVP >gi|281305290|gb|ADEF01000039.1| GENE 22 28348 - 30858 2037 836 aa, chain - ## HITS:1 COG:no KEGG:PRU_0128 NR:ns ## KEGG: PRU_0128 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 829 1 829 829 1213 69.0 0 MEVWKKYGLDIAAVVLFALISFAYFVPASLDGRILFQHDASAGRGMGHEQQTYFERTGER TRWTNSVFGGMPTYQTAPSYKSTDALSKVMDAYHLWLPENVWYVFAYLLGFYILLRAFDF RQELAVLGSIIWAFSSYFFIIIAAGHIWKVMALAYLPPMIAGLVLAYRGKYLWGFILTAL FTAFEVKANHVQMTYYYLFVVLFMVIAYLVQAIKNKQLLHFGKATAVCAAAACLGICMNL SNLYHTWEYSKESMRGKSELVKANTANQTNSGLERDYITQWSYGIGETWTLLIPNAKGGA SVPLSQNETAMKKADPNFIQIYQQIGQYWGEQPGTSGPVYVGAFVLMLFILALFIVKGPM KWALLAATVLSILLSWGKNFMPLTNFFIDYMPMYAKFRTVASILVIAEFTIPLLAMLGLK KILDTPSVLNNQIKYVYISFGLTAGFCLLFALMPSVFFSNFVSAQELEAMKSIPAEYQGQ LLANLREMRQAIFTDDCWRSFFIIVIGTFLLLLYRANKLKKSVFVGLVIVLCLVDMWQVN KRYLNDGMFVEKSVRDNPIEMTPTDQQILQTKELDYRVLNLATSTFNENETSYFHKSIGG YHPAKLRRYQEMIETYIAPEMEKLMKSIFEAQGDMTKLNGDSISPVLNMLNTKFFIMPLQ GGQTVPLKNPYAFGNAWFVDKVTYVNNANEELEMVGKLNLRAEAVADKKFRDVLGSSCEQ DHHAQVTMKTYEPNQLTYEVESAKGGVLVFSENYYPEWTATVDGKEVPVGRVNYILRAIQ VKPGKHQVVLSFFPKSVDRTETVAYIAFALLVICILLGIGLEIRQRKTGATAQDSK >gi|281305290|gb|ADEF01000039.1| GENE 23 30871 - 31653 442 260 aa, chain + ## HITS:1 COG:VC2379 KEGG:ns NR:ns ## COG: VC2379 COG0775 # Protein_GI_number: 15642376 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Vibrio cholerae # 34 236 1 207 231 152 41.0 8e-37 MIIFCHKDNKSLGLNTDYISFFAIFARKRERLDMKIGVIVAMDKEFVQLKSLLENSQMEQ DNHLSFVKGKIKQNEIVLMQCGIGKVNAAIGAVEMIHRYQPQLIVSSGCAGAADTALNPK DVVVSTECCYHDAYCGKECAKGQIMGMPASYVSPPELVNKALSLSYHKNIKSGLIVSGDW FVDSREKMQHILQSFPKAAAVDMESGAIAQTCHLYHIPFISFRIISDVPLKDTEASQYYN FWEQIAHDSFEVTKDFLQKI >gi|281305290|gb|ADEF01000039.1| GENE 24 31739 - 32218 580 159 aa, chain + ## HITS:1 COG:CAC2942 KEGG:ns NR:ns ## COG: CAC2942 COG1854 # Protein_GI_number: 15896195 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Clostridium acetobutylicum # 1 159 1 158 158 186 54.0 2e-47 MNKIPSFTIDHNKLLRGIYVSRQDIIGSEVITTFDIRMKEPNREPVLHIGALHTIEHLAA TYLRNNAQWKDKIIYWGPMGCLTGNYLIVHGDLKSRDIVDLMIHTFEFVANFEGEIPGAQ AQDCGNYLLHDLPMARYEAHKFLTEVLEKIEEKNLIYPK >gi|281305290|gb|ADEF01000039.1| GENE 25 32288 - 32851 588 187 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880782|ref|ZP_06289478.1| ## NR: gi|282880782|ref|ZP_06289478.1| hypothetical protein HMPREF9019_2074 [Prevotella timonensis CRIS 5C-B1] # 1 175 1 175 187 332 100.0 9e-90 MQKFFFILLFAWIGTSLSVNAQRKIVVYDAETKVPMRKVWVWADTQKCDSTNYLGQTTIP QQFDTLTIIKPKYLPLHIPARMVGDSISMIKDEKMIGEVVVYGKDMQTQLNKTIQGWMKA DANERAMLAPSSVGAFDFFSMFDFKAKKYRKQRQRMLNSFKQMDKLDEDPIIQIYKETQK EQQQKKK >gi|281305290|gb|ADEF01000039.1| GENE 26 33017 - 34114 1207 365 aa, chain - ## HITS:1 COG:slr0329 KEGG:ns NR:ns ## COG: slr0329 COG1940 # Protein_GI_number: 16331233 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Synechocystis # 8 286 30 288 327 71 23.0 3e-12 MNYKDDKRIIMTLDAGGTNFVFSAMQGGEQMIEPFALPSMANDLNACLGQLVKGFEKIQH LIPMDASAISFAFPGPADYENGIIGDLPNFPSFRGGVALGPYLQIRFGMPVFINNDGSLF AYGEAMAGALPLVNNRLEEAGSPKRFNNLLGLTFGTGFGAGVVINGELLVGDNGLGGDIW CFRNKKYPAYIVEDSVAIRAIKRVYRELSGDVRDLEPKDINDIIAGKIDGNVDAAKKSFA EFGEMAGDAIAMADTIVDGLVVIGGGVSKASAHILPALVGEMNSKLKMMNGEEVGHMQMK VYNLEDEQQFADFTRGGAVKINVPGSSVQVDYDPMKRIGVIVSKNGASESIALGAYVYAL NKLDE >gi|281305290|gb|ADEF01000039.1| GENE 27 34171 - 34908 555 245 aa, chain - ## HITS:1 COG:no KEGG:PRU_1474 NR:ns ## KEGG: PRU_1474 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 67 241 39 167 171 72 27.0 2e-11 MKKFLVTFVLLLSVLFGWAQGTVGTWSLIPKIGVNFANISGFDIFEMDDPVKGFEGSSVL KSKYLEGLIIGLDVQNQITERVAASAGLFYSRQGMDFPEFENIDDKNVHHASNGFQWKFH YLQLPVMLHTYVVSGLSVNAGLQIGYLLSAKGFASQSHFYTDKEGKTHYEKDEEGNLLYD YKSKYDMTDNMKRIDVSVPVGISYEYRNVLLDARYHFGLLKINKDDYSTFKNKVFSFTVG YIFDL >gi|281305290|gb|ADEF01000039.1| GENE 28 34793 - 35062 150 89 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFAKFTPIFGISDHVPTVPCAQPNKTLNNKTKVTKNFFISKRFIGKRQLHLFYYNNGSKI FLHRLRMLKWYCHLITFETNEEKAGANSE >gi|281305290|gb|ADEF01000039.1| GENE 29 35184 - 37325 2231 713 aa, chain - ## HITS:1 COG:no KEGG:PRU_0859 NR:ns ## KEGG: PRU_0859 # Name: not_defined # Def: peptidyl-prolyl cis-trans isomerase-like protein # Organism: P.ruminicola # Pathway: not_defined # 1 713 1 711 711 754 58.0 0 MAALGKIRKRGMILISIIGLGLFAFIAEEGFRSCEASRNDQRQQVGKVLGEKVNVQDFQK LMDEYTEVIKMQQGVDNLNEMQMNQVKDMVWQTYIQTKVVEDEAKKIGLTVTDAELQNIL AEGTNPMLMQTPFVNRQTGRFDVNSLKKFIADYKTQQTANPQMAAQYQTLYKYWTFIERT LRQQILAQKYQSLLAGCILSNPVEAKLSYKEENEESSIQLATFAYSTIDDSKIKVQDADL KAKYDELKERFKQNVESRDIKYVTVRVEPSPADRAELQQTFKKYTTDLAAASEPANVVRK STSLVNYLGIPVAKTAYPNDIADKLDSMAVGQTYGPFETKMDNSMNVVKLISKQLLPDSV QYRQIQVMGKTPAEAQKRADSIYTALNAGAAFETIAKKYGQSGEKVWMTTAQYQNAPSLD ADTKTYIGTLNNSGVNELKNIKLGQGNLIVQVVDRRAMINKYTAAVIKKSIDFSKDTYSK AYNKFSSFVSANQTPESIQKNAKSSGYTVQDAKDITTSTHTLVGINATREAMKWLFDAKE GEISPMYECGNNDQLLLVVLDKIHPKGYRSYDDPQVKEFLKAEVLRDKKAEQLMAKAKDV KNIAAAQAKGAKVDAVNQITFAAPVFVMSVGASEPALSGAVAATAKGKFSSRPVKGNAGV YVFEVTGRTMRPGKFDAKTEEQKTRQKALQYAGNFMNELILKANIEDNRYLFF >gi|281305290|gb|ADEF01000039.1| GENE 30 37508 - 38785 874 425 aa, chain - ## HITS:1 COG:FN1486 KEGG:ns NR:ns ## COG: FN1486 COG1253 # Protein_GI_number: 19704818 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Fusobacterium nucleatum # 20 423 17 419 426 159 27.0 8e-39 MNEQVDISLIIFILITMVLSAFFSGMEIAFVSSNRMLVQMDKEKNGFSQRFLTLFYSNPN AFVSTMLVGNNIVLVIYGILIARLLDNTIFVGMNPAFTVPADTILSTLIILFTGEFVPKT LFNSNPNRLLKLFAFPAYLFYVILWPISRFATFLARIILGLLGVSIPKDAVAAGFSKVDL DYLVQSSIENAQSEDDIENEIKIFHNALDFPDTKVRDCMIPRTEINAVDMNQCSLDELRQ KFMDSGNSKIIVYQEDIDHIQGYIHSSEMFKHSSTWQEGIRTMPFVPETMPAQKLMRILL TQKKSLAIVVDEFGGTSGLVSLEDIVEEIFGEIEDEHDSLKYVAKQTGEKEFLLSARLEI DKVNEMFELDLPESDDYMTIGGLILNEYRSFPKLNEIIEIGKYKFKILKSTSSKIELVQL NIISN >gi|281305290|gb|ADEF01000039.1| GENE 31 38797 - 39411 346 204 aa, chain - ## HITS:1 COG:no KEGG:PRU_0861 NR:ns ## KEGG: PRU_0861 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 3 200 2 198 205 208 55.0 1e-52 MQILGFVSCEKQTEHIAPAIYDRDSVPTMTTYGVNQLISDSGVIKYRIVTERWEVYQNTT PQKFVFRKGAFLEQFDESFHVQSFIQCDTAYYNIDAQLWELRGRVRILTKDGLKFSSEEL FLDRRAHEMYSHRFSKLVTPERTLQGSYFKSDERMTKYIVTNSRGSFEKSDFTGETDTTS TPTDSTNVFLRPQASPRPKLPTTP >gi|281305290|gb|ADEF01000039.1| GENE 32 39476 - 40777 1003 433 aa, chain - ## HITS:1 COG:no KEGG:PRU_0862 NR:ns ## KEGG: PRU_0862 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 433 1 428 428 407 48.0 1e-112 MKKIFGAFLWASISISAFAQSGTNSPYSQYGFGVLSDQTSGFNRGMNGLGYGFRENDQVN FINPASYSALDSLTFIFDAGLSGQLTHFEEGNRKLNAKNADLEYVVAGLRLAKHLGLSFG LVPFTNIGYNYSNTATIHIDENYTKTTTTNAYLGKGGLHQVYLGAGWEPFKGFSLGVNVS YLWGKYDRSIVNSYSDMSINTVSKYYSASVHNYKLDVGLQYTARLSRQNQVTLGAIYSLG HRLNADPSLSIISQNPQTGIRDTTLFTVNNGLELPSAIGGGLGWNHRNQLKIGADYLLQQ WSKTSYPNYTMANGTPQYVLTQGMFKDRHKFTFGGEFCQDANSRHFFQRMHYRIGASYAT PYLKINGQDGPSEISVSAGFGIPIVNSWNNRSMLNISAQWVRQDAKDFIKENTFRINIGL TFNERWFAKWKVQ >gi|281305290|gb|ADEF01000039.1| GENE 33 40922 - 42076 688 384 aa, chain + ## HITS:1 COG:no KEGG:PRU_0863 NR:ns ## KEGG: PRU_0863 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 18 370 44 390 393 282 43.0 1e-74 MTTMPTFAQADSTMLKSMDSVRISLLTCGPGNQVYSYYGHTAIRYHDLARQQDIAINYGI FSFQKSYFILRFVFGLTDYEMGIEDFATFISTYSHRGSWVKEQVLNLTREEKWAITQAID VNYRPENRVYRYNYFYDNCTTRARDMLINHIEGHVLYPASQSQKISYREMIHQWNQSHRW ARFGNDLLLGVHADAATTNEQQQFLPDSLRADFAEAIVIDHQGHRRSLVDSTCYLVPPVE KHESRTPITPLHCAVLWCIATLIICFAEWKFKRILWQYDLIVMLLSGIASVILLAMVFSQ HPTVQLNFQILLLCPLHLFFLYPSIKALRNGHLHDYTKFWSILLCAFLLLSFFQHYAEGM TLVALSLLCRYCWLYIYTHKIKNR >gi|281305290|gb|ADEF01000039.1| GENE 34 42073 - 43437 842 454 aa, chain + ## HITS:1 COG:CC2461 KEGG:ns NR:ns ## COG: CC2461 COG1524 # Protein_GI_number: 16126700 # Func_class: R General function prediction only # Function: Uncharacterized proteins of the AP superfamily # Organism: Caulobacter vibrioides # 1 166 13 188 577 76 33.0 1e-13 MNKCLSAIIMATLTGTTTQAQTLQVAPRLVVNITIDQLRNDYIEHYSPLYSPNGFKKLLS KGCVYEAANYPFESVDRASAIATIVTGTTPTYHNIISTRWLDRKTLRPVFCVDDAKYKTS PQRLSTSTISDELKVSSNGGSIVYGIASQRDAAVLSAGHAADGAFWIDEETGSWTTSNYY GSKAQKWIQAYRNTTSKPSKEQAEQNNAVCDAAIACLNHHAMGKDAQTDYLSITLSAKGT QNEKWRTDFESLYRGLDHTLASLIEQIEKSVGNQQVLFVLTSTGYTDDPKVDYAKYRIPT GTFYINRTANLLNMYLGAIYGQSRYVETCFSNQIYLNRKFIEDKLLSFEDILSRSKDFLA QIAGIRKVSESPYNPAVSGDLIIEVAPGWQLLNEDNQDNYIARASFVPFPIILYGMGIKP QRVTTPVSVDRIAPTIAKSIQIRAPNACKVSPLQ >gi|281305290|gb|ADEF01000039.1| GENE 35 43856 - 47188 3359 1110 aa, chain + ## HITS:1 COG:CT701 KEGG:ns NR:ns ## COG: CT701 COG0653 # Protein_GI_number: 15605434 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Chlamydia trachomatis # 6 1050 4 951 969 615 38.0 1e-175 MNINKFLKSLFGDKSSRDMRLIQPLVETVKKVYPDIQKLSNDELRAKTKEIQKYVQDSAQ AQKDKIAQLKANIEETPIDEREPIFEEIDKLEKEALEIYEKALNDVMPTAFSIVKDTARR FAENEEVVVTATDFDRELAADPSKDFVTIDGDKAIYHNHWTAGGNDLKWEMVHYDVQLFG GIALHQGKIAEMATGEGKTLVATLPVFLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFN GLSVDCIDKHRPNSPERRKAYMADITFGTNNEFGFDYLRDNMAISPADLVQRAHNYAIVD EVDSVLIDDARTPLIISGPIPKGDDQMFEEYQPLVERLVDVQRKLATQFLAEAKQLITEG QANKDQKKTEEGFLALYRSYKSLPKNKPLIKYLSEEGIKAGMLKTEEYYMQNNNREMPKA VEPLFFVVDEKLNSCDLTDKGTEWLSKQVNDNQLFVLPDITAQLSALENETNLSDQERID KKDELLTHYGVQSERVHTLQQLLKAYTMFNKDDEYVVMDGEVKIVDEQTGRIMEGRRWSD GLHQAVEAKEHVKVEAATQTFATITLQNYFRMYHKLAGMTGTASTEAGEFWDIYKLDVVE IPTNRPIQRNDMDDRVYKTAREKYAAVIDEIERMRNSGRPCLVGTTSVEISELLSKMLNM RKIPHNVLNAKLHQKEADIVAQAGQSINGLGAVTIATNMAGRGTDIKLSPEVKEAGGLAI IGTERHESRRVDRQLRGRAGRQGDPGSSVFYVSLEDKLMRLFGSERISSVMDRLGFKEGE RIESPMISKSIERAQKKVEENNFGIRKHLLEYDDVMNKQRTVIYEKRRHALMGERIGMDI TNIIWDRCLNIVGSNDYQEAKELFLKVLAMEVPFTEEEFTAGDKNALAERAFQDAMAVFK RKSDRIQAVAWPVIKQVQEEQGERFERIAVPLTDGKRMYQISCNLKEAYDTEAKDVVKQF EKSTLLHIIDENWKENLRQLDDLRHSVQNASYEQKDPLLIFKLESAKLWDSMIDEMNNQT TSILMRAQIPEMQHEEVQEAAPEQRSQRYNEQKEDLTDPNQAAAARQDTREGAQQVNRTP YIKDKMPRPNDPCPCGSGKKFKNCHGRNLR >gi|281305290|gb|ADEF01000039.1| GENE 36 47353 - 48144 191 263 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 17 239 37 242 329 78 26 2e-13 MKIQLTGLKKIFVEKTAVDIPSLEIDKGEVIGLVGNNGAGKTTLFRLLLDLQKADEGQVL LGFDEKETKQSVSTESLTPSQDSTNLTWISPSETETWKALTGAYIDSGFLIDFLTPEEYF DFIAKVNHLPAEQLQSFLNSMAQLMDGEILGQKKLIRDFSAGNQQKIGIIAAMIAHPQLL VLDEPFNFLDPSSQNLLKKIILDYHKQTNATILVSSHNLQHTIEISTRVILLEKGKIIKD LPNENQKAEADLEAYFNREMNNE >gi|281305290|gb|ADEF01000039.1| GENE 37 48161 - 49702 464 513 aa, chain - ## HITS:1 COG:all1983_1 KEGG:ns NR:ns ## COG: all1983_1 COG0658 # Protein_GI_number: 17229475 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Nostoc sp. PCC 7120 # 210 503 249 532 612 89 27.0 2e-17 MKSADWLQLHPLLKIVFAFIIGLVIAHTFNFGTFASWWLWLGITIVALLVALLCRSHARW QGVCIFGAFIFWGMSLYTLQDCRSDSSLPAGEQVAQGVIMSPLISKGKVVQCDVLLTKGL LSGKKVKASILKDTLQRRYQQLGIGSGIVFRAVFHRFENRKSESHFDYPQWMYLHGYRAQ TFIYFTDWQTCAVDFHDLPRVERLRLFAQQVRSRLLQILERQGLHDQDYAVIAAMTLGDK SSLSKSTKELYSITGTSHLLALSGLHLSILFGLLSVVFGRRHLLNVVIVILTIWAYIFLT GMSSSILRSGLMLTLYSLVSLLNRHRMSLNALSFAAIVMLMIQPMLLWDVSFQLSFMAVL AILILYHPIYHLLPLHWLQCSSFIRLLWGMMTVSVAAQIGTAPLVAYYFGRFSCYFLFTN LIAVPLTTFILYTACLVFMLSFWTLAQNIVAKVMAWTAQCLNQQLSVIASWTGASVENIH LTAIQVLAIYLLISCGIGFLFYLSKSYRQSKIY >gi|281305290|gb|ADEF01000039.1| GENE 38 49699 - 50409 442 236 aa, chain - ## HITS:1 COG:XF2023 KEGG:ns NR:ns ## COG: XF2023 COG5587 # Protein_GI_number: 15838617 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Xylella fastidiosa 9a5c # 9 207 21 208 237 75 25.0 6e-14 MDIKRILHYLEEIAANNNRDWFQSHKKEYLCCRQEFEEGVNKAIATIAEFDPTVAHVTAK DACFRFNRDTRFSPDKSPYKRHFGAYISAKGRKSLHAGYYIHLQPSHCLLSAGAYWLPTP ILTSCRNEIMGHIDTWRECVETGKFVNYFGYANEGVWNDGQASQKGFGISCLKTCPKGFP SDYEFIQYLRMKDYACWHRVDNDFFGGNDWLLPMAELFKVALPMMQFTNNVIDDYE >gi|281305290|gb|ADEF01000039.1| GENE 39 50413 - 51063 519 216 aa, chain - ## HITS:1 COG:L0253 KEGG:ns NR:ns ## COG: L0253 COG0177 # Protein_GI_number: 15673053 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Lactococcus lactis # 1 206 1 208 218 187 49.0 1e-47 MTRKERYKFILDYFKEISPEVTTELEFGSAFQLLVATLLSAQCTDKRINQVTPALFARYP DAPSMAQATAEDIFTYVRSVSYPNSKSKHLVEMAQMLVRDFDGEVPDNTTDLVKLPGVGR KTANVVQAVWYGKAKIAVDTHVYRVSHRLGLVSQKSNTPLKVELDLMKYIPEADVSSAHH WLLLHGRYICQSLRPKCEKCPFEAICPKLMNFSKLG >gi|281305290|gb|ADEF01000039.1| GENE 40 51227 - 52372 812 381 aa, chain - ## HITS:1 COG:Cj0082 KEGG:ns NR:ns ## COG: Cj0082 COG1294 # Protein_GI_number: 15791472 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Campylobacter jejuni # 7 379 10 371 374 306 51.0 3e-83 MITYSFLQHYWWFLVSLLGALLVFLMFVQGANSLVFNLGKTEHERRMVMNSTGRKWEITF TTLVTFGGAFFASFPLFYSTSFGGAYWLWMIILFSFVVQAISYEFQNKLGNFLGVKTFQW CLVINGILGPVLLGGAVATFFNGSNFVVDKMNITNSVAPVISHWANYSHGLDALLDIWNV VLGLAVFFLARILGTLYIINNVADETLRARSRKQLLYNTAAFLLLFLPFLIRTLLKDGFA YDPATGVISMESMKYLYNLLDMWYLAVVLLVGVVLLLFGIVRTVMCNNYIKGIWPAGIGV VLVVLVLLLIAGWNNTAYYPSNVDLQSSLTIANSCSSEFTLTTMSIVSLFIPFVLAYIVY VWYAMDKDKITKEEVKEGDVY >gi|281305290|gb|ADEF01000039.1| GENE 41 52389 - 53951 940 520 aa, chain - ## HITS:1 COG:Cj0081 KEGG:ns NR:ns ## COG: Cj0081 COG1271 # Protein_GI_number: 15791471 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Campylobacter jejuni # 12 508 6 504 520 489 48.0 1e-138 MHNLLLEISAQTIDWSRAQFALTAIYHWLFVPLTLGLAVVMGIMETCYYRTRDPFWKDAA RFWQKLFGINFAMGVATGIILEFEFGTNWSNYSWFVGDIFGAPLAVEGIIAFFMEATFVA VMFFGWKKVSPGFHLASTWLTGLGATISAWWILVANAWMQLPVGQEFNPDTMRFEMNSFM EVALSPFAVDKFCHTVTSSWIIGGVFTVAVSSWYLLKRRDHKLAIASMKIGSIVGLVATL LALITGHSSAIQVGKVQPMKLAAMEALYNGGTSQGLTVFSAVNPFKQPDYTNQQQQPMKL ELPKGLSFLATLDFDGYVPGVNDILNGYTKPDGTQVLSVEEKMQRGRMAIAALQDYRNGK KDEATKQALKDNMPYFGYGYVKSPHQVVPFIPVNFWAFRLMVGIGMLLILFFICSLFIVY KKDIVKHRWLLISGIVLLPCSYIASESGWLVAEFGRQPWTIQDMLPTWVAISDIKPSSVI VTFFIFLILFTTMLAVEISILCKAIKKGPENSEISNHVEL >gi|281305290|gb|ADEF01000039.1| GENE 42 53964 - 54188 147 74 aa, chain - ## HITS:1 COG:no KEGG:PGN_1040 NR:ns ## KEGG: PGN_1040 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 3 74 8 81 82 72 51.0 6e-12 MNKKSFLYRAFDLYYDGFKNMTLGKTLWAVIIIKLFIMFAVLKFFFFPNFIHQNAKDGGE ADFVSSEMIKRTIH >gi|281305290|gb|ADEF01000039.1| GENE 43 55097 - 55705 561 202 aa, chain + ## HITS:1 COG:no KEGG:PRU_1474 NR:ns ## KEGG: PRU_1474 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 11 199 1 168 171 120 44.0 3e-26 MKKVILSACVMLIAIAAYGQRDKGTVTLQPKVGLNVATLTNDGDADSRFAPVVGAEVEVQ ATDMVSFSGGLLYSMQGAKGKVGNVDGTVKLDYINVPILANVYVANGFAVKLGVQPGFLI NNKVKVSQNGVNAEVDLEKAFKAAGIDAKLNKVDVSFPVGVSYEFSNINIDARYNLGLTK IIDEDSSKNSVFQITVGYKFAL >gi|281305290|gb|ADEF01000039.1| GENE 44 55830 - 56933 937 367 aa, chain - ## HITS:1 COG:all0498 KEGG:ns NR:ns ## COG: all0498 COG0399 # Protein_GI_number: 17227994 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 2 359 8 371 395 218 37.0 1e-56 MIPYLSLQRVTNEHLTEIQQAVNKVIESGWYLQGQAVQTFEKQYADYIGTRHCVSCANGL DALTLILKAYIELGMMQAGDEIIVPANTYIATILAITANQLVPVLIEPRMDTFQIDDTKI EEVITERTRGIMLVHLYGRCAYTNLIGELCQKYHLQLIEDNAQAHGCRYNGNQRTGSLGD AAAHSFYPGKNLGALGDAGVVTTNDSELANTIRTLANYGSSQKYVFPYKGQNSRMDEIQA AVLSVKLKYLDADNVRRSAIAQHYLSNIHHPLLTLPQGCGEDNVWHIFPILTPQRDQLQQ FLLQQGIQTVIHYPIPPHQQGAYKEWNNRTYPITERIHAQELSIPLNQTLTDAEVNTIVN VLNSYPT >gi|281305290|gb|ADEF01000039.1| GENE 45 56930 - 57868 534 312 aa, chain - ## HITS:1 COG:no KEGG:PRU_0177 NR:ns ## KEGG: PRU_0177 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 312 1 311 311 333 49.0 6e-90 MFEIKRYAPTDKERWNSYVREAKNATFLLDRAYMDYHQDRFADASLLFYKEGRLYALLPA HIANDTLYTHLGLTYGGLVMDDRVTASDTLCLFEELNTYLRTQHIKRVVYRPTPSIYHLT PAEEDLYALFKVCNAQLVARNISSAIDLTHPLKWSRDRKYGINRCAKNGIEIKQSTDFAA FWQVLDDNLMNKYGAKPVHSLQEIELLHQRFPHHIQLYVACKDNMVLGGTVLYLTPNVVH TQYISASPEGKQLRVIDGLFHFLLHQSWDKRQYFDFGTSTLQDGHLLNAPLIHQKEGFGG RAICYDTYQWDI >gi|281305290|gb|ADEF01000039.1| GENE 46 57861 - 58271 376 136 aa, chain - ## HITS:1 COG:no KEGG:PRU_0176 NR:ns ## KEGG: PRU_0176 # Name: not_defined # Def: polysaccharide glycan isomerase # Organism: P.ruminicola # Pathway: not_defined # 1 130 4 133 137 190 70.0 2e-47 MEAKIIDLDKIVDPRGNLTVAEGCKDVPFDVKRVYWVYDVPAGESRGGHAHKRCKEFLIA LSGSFHVTLDNGKEKTSILLNHPYQGLFVDTDTWRTLDDFSSGAVCLVLASEPFDEEDYI RDYHSFVEYIKNKPDV >gi|281305290|gb|ADEF01000039.1| GENE 47 58285 - 59433 1288 382 aa, chain - ## HITS:1 COG:FN1667 KEGG:ns NR:ns ## COG: FN1667 COG1088 # Protein_GI_number: 19704988 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-D-glucose 4,6-dehydratase # Organism: Fusobacterium nucleatum # 1 382 1 399 399 488 59.0 1e-138 MKTYLVTGAAGFIGANFIKYLLDKKYKNEDIKVIILDALTYAGNLGTIKNDIDNKRCFFV KGDIRDKDLADKLFAEHDIDFVVNFAAESHVDRSIEDPQLFLSVNILGTQNLMDAARRAW VMGKDAQGYPTWKAGKRYHQVSTDEVYGSLGAEGFFTEQTPLCPHSPYSASKTSADMIVM AYRDTYRMPASITRCSNNYGPYHFPEKLIPLIIKNILEGKQLPVYGKGDNVRDWLYVEDH CKAIDMVVREGKEGEVYNVGGHNEMKNIDIVKLTIKTIHDMMQQDKDLRKVLKKQEVDEQ GNIKIDWINDNLITFVADRLGHDQRYAIDPTKIKNDLGWYPETMFADGIVKTIKWNLQHQ DWINEVTSGDYQKYYEQMYGNR >gi|281305290|gb|ADEF01000039.1| GENE 48 59430 - 59696 266 88 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880806|ref|ZP_06289502.1| ## NR: gi|282880806|ref|ZP_06289502.1| hypothetical protein HMPREF9019_2098 [Prevotella timonensis CRIS 5C-B1] # 1 88 1 88 88 150 100.0 2e-35 MKKAHTYLFQFIVLTGVYYGTQLLFNWGGEYHWQNLMIGSALFGMTMMLLNIYSDYREEK KRKEKNQEYLETYDKVIKDKDHKKQQEI >gi|281305290|gb|ADEF01000039.1| GENE 49 59704 - 60210 374 168 aa, chain - ## HITS:1 COG:no KEGG:PRU_0172 NR:ns ## KEGG: PRU_0172 # Name: not_defined # Def: phosphodiesterase (EC:3.1.-.-) # Organism: P.ruminicola # Pathway: not_defined # 1 163 1 163 163 281 77.0 4e-75 MKRIGIISDTHAYWDDKYEKYFAECDEIWHAGDIGSLEVALKLAAIKPLRAVCGNCDGGD LRRMYRDKLRFKCEDVDVLLTHIGGYPGNYAPQIRSLLFASPPQLFVCGHSHILKVQYDK TLNLLHINPGAAGLQGWHRERTLIRLTIEGNKFTDCEVIALSDKNHHP >gi|281305290|gb|ADEF01000039.1| GENE 50 60218 - 60859 676 213 aa, chain - ## HITS:1 COG:no KEGG:PRU_0171 NR:ns ## KEGG: PRU_0171 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 7 207 4 204 205 241 58.0 1e-62 MENKDKLIINIGRQVGSGGRIIAKLLADEFECQFYDKEILNLAAKESGFSEKFFEQNDEQ RGFFQTLFSMHAPLISDNNFYNNKFSQDGLFQFQSEAITKAADEGSCVFVGRAADYVLRT YPNVVNIFITANMKDRIKLVCQRLGCDEKDAKKLIIDKESERASYYNYYTGKKWGHSCSY DLCINSSYMGLEKTAKFIGDYIRMRFGYNSKER >gi|281305290|gb|ADEF01000039.1| GENE 51 60831 - 62219 1075 462 aa, chain - ## HITS:1 COG:CAC0883 KEGG:ns NR:ns ## COG: CAC0883 COG0534 # Protein_GI_number: 15894170 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Clostridium acetobutylicum # 9 433 6 431 448 331 43.0 1e-90 MDNKAATLELGTKPVGALLMQYAMPAVIAMTASSLYNMVDRIFIGQVVGPMAISGLAITF PFMNLSAAFGAAIGVGSSTAISVKLGQKDYDIAENVLGNSVTLNIIIGLAFGIICLLFLD PIILFFGASENTLPYARDYMEVILIGNIISHMYFGMNNVLRAASKPNQAMYATMFTVVMN AILDAIFILWWGWGIRGAAFATIISQAMALVWQLKLFSNPNELLHLKRGIYRLKSDLVKN IIGIGISPFLMNACACIIVIFMNNQFVRYGGDMAVGAYGIANSIGVVFIMFVMGINQGMQ PIAGYNYGAMQLDRVMRVLELSIIAATVIMTVGWAIAMFIPYYCVRLFTNDPTLIAMSIK GTRIDLLMFPVVGAQMVITNFFQCIGKVKISIFLSLSRQLLFLLPLLAILPPIFGLDGVW GALPASDLVAVIVAVIMMTIYMKKFKIQHKESTNGKQGQTDY >gi|281305290|gb|ADEF01000039.1| GENE 52 62484 - 63416 946 310 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880810|ref|ZP_06289506.1| ## NR: gi|282880810|ref|ZP_06289506.1| hypothetical protein HMPREF9019_2102 [Prevotella timonensis CRIS 5C-B1] # 1 310 1 310 310 608 100.0 1e-173 MKRKIILSFVLSAIAMSINAQEYNMKVNKVNGEVLTIATSEIKDVVFEEIKGKEEEPQDE PRFITMGGKKWAMGNLVYDNGKWRIAANQWEYFNAVYGRAGEGNTKCNLSDTQVDHFRWG VLGNAAITQGSDVVKAFGNGAWDIYNISGKMYKDIDCKDETKNFDEAKYGDLAFWATKGK WRMPSKADWNFLKDGCDWQLGYITLDNGKQLYGCLITEAAGDFGETKTMAKEFSKAEVEK NLFLPLAGYCFENKIRNAAYGGYYWTSQLFNKTDNYAFEVSFDRDGFYINQNGGDANNGN CIRPILVETK >gi|281305290|gb|ADEF01000039.1| GENE 53 63457 - 63939 405 160 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880811|ref|ZP_06289507.1| ## NR: gi|282880811|ref|ZP_06289507.1| hypothetical protein HMPREF9019_2103 [Prevotella timonensis CRIS 5C-B1] # 1 160 1 160 160 291 100.0 9e-78 MKINYKLVLSCVLFMITPFRTMATEYLTIEFKDKSFVTFGMDKQPVISFKDGNLVITDNS NETKEMVTNQVVRYYFSKQKITANIEEERTVAQKPIVLNGHVMYQGLTSSSVVRVFTLNG VEVAHYKADSQGRVDIDVSTMPHGVYIFHSNKNVIKIVNK >gi|281305290|gb|ADEF01000039.1| GENE 54 63974 - 64867 588 297 aa, chain - ## HITS:1 COG:VC2004 KEGG:ns NR:ns ## COG: VC2004 COG3016 # Protein_GI_number: 15642006 # Func_class: S Function unknown # Function: Uncharacterized iron-regulated protein # Organism: Vibrio cholerae # 9 267 25 281 325 112 28.0 7e-25 MKQKNKFLSLLLVIVAAGSMFVNAQQKTYDAYRLYDNNGKAIDYQQMVQQLSKADVVFLG EIHNCAITHWLELRILQSLYLAHGNKLALGMEMFEADNQLILNEYLQGLIFSDRFEEEAR IWPNYVTDYAPIVNFARENKIPTVATNVPRRYAAMAKEHGLAFIDSLSKEAKQYFPPLPI PYEPNPQAEQGFAMMRMLGGGKSNKNNNHLSEAQALKDATMAWHIAQTSKPKMLHINGNI HTDGNSGIITYLRKYAPKKKIITLRTVRQEDITFLDDTYKGLADYYLCVPEDMTNTY >gi|281305290|gb|ADEF01000039.1| GENE 55 64851 - 67502 1384 883 aa, chain - ## HITS:1 COG:PM0804 KEGG:ns NR:ns ## COG: PM0804 COG0612 # Protein_GI_number: 15602669 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Pasteurella multocida # 1 810 61 855 923 172 24.0 2e-42 MIMRIGSLVEDEEQRGCAHFLEHLAFEGTKHFPNRTMIQAFEAQGMKYGRDINAFTGFDR TIYSLSLPITSAQQRFEILQLALHSASDWLGAIDISTSHVENEKGTIIEELRSYTLPDDF YTLKIGTGRYSKRMPLGSEQEIKAVTPKALLQYYNKWYKPHNATIIIVGDVDVNEAKHLI STTLGHLPNTNKQTPPPTYPLTYSKGINYMVLTDSLQTTQKIDWIIPHVMPFTTNLHNML ERKRMAIVCSLLNNRLKESGTRCEVYDSWYLANKNHFTFSFSSTHNSTLLQSIRAVSAEC RRVVKQGVCSIELQHLIKKQQEKMIVEKEDKTATEICDDLIDYVIFGERRIYSNQEANQL KVLLSKTTSKDIVKRLSFLLKQMRRSSLIAYNSHSDNSLSKQAIIQAWQQGQRQNMERYT FHPLHPSSPSTAIQRPEWDLKKYEIAKGAITDQNYHENLKVTDIKLSNGIRLLLKPTTTA DSTIYIAWIGRGGMADLTTLQQKRFYDAIAYVDLGGIQGLPNDTLSDIMMQKSLSMALGV DQYWHQLLASGPVCNSSSLFRLIREKIMHPGLDYTLFENLKQSEIANNGKETLLQRMMKR DTNRLIDICIDSLVGNGRDKTFLMNKADWQQLNLDTLATYYKRTFGDLRNTTIILAGGFD LTKIIPQAVAIFSEMPQQDAMPLDNRPISLPHNEVRKVFIDSDSHQKGTLYMVLPFNYHP GLRTSLCMKLMRDLLQERVIDILREKLHIVYSPYVDLFYDGYPQQRAYLQLTIDAEKNNL ETVEQTLCNIVTQFQDTAVSTANLEKMKRSFLVAKQQALSNDTPVEWKNALTSLIKNEES IADFNHYESILQQITAQEIQQMFKQHIKLNKRIVLIKTDETKK >gi|281305290|gb|ADEF01000039.1| GENE 56 67790 - 69007 1094 405 aa, chain - ## HITS:1 COG:no KEGG:BF3446 NR:ns ## KEGG: BF3446 # Name: not_defined # Def: putative lipoprotein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 403 5 397 400 203 31.0 1e-50 MKTIKFTLAALLALLLIPSCTEEKDEQMTNHLNLELQGVHEIAEDDNTTITIKASLSFTP EEDVTANLMVTGNDDNIVELSTQNLVFKKGEKLKTFTIKSNNKHLVKGVRSITINVGHIN NDNVKLLKPVTINVQQDSDIPVLTEAQQSLIKGYKEKFGVDLTSILGKIKVKATVSYNAR DKEQYFGGKEKETFNGYTIITLSEKATADKPVLKMVSNAMGLNDFFYMVLKKKTVEDTEF FQQQPNGLAVVKAVKFDPKEDTFTTALDNIELNIKDGKINFLGTGKDVYGDEITVVPFSY KFSAWERLQNIVKQGNVSVTIKLPYEDHEQTILINQDVIDAGGSISPNRWLGYSTIDKDS YKNDPSDYIKPTSVLDFKGGKMSFTFPWDFDEANGYTQINVEYTF >gi|281305290|gb|ADEF01000039.1| GENE 57 69111 - 70520 1080 469 aa, chain - ## HITS:1 COG:no KEGG:BF3445 NR:ns ## KEGG: BF3445 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 15 463 19 477 482 308 40.0 3e-82 MFKITRKNILLFHYIISAMIFTSCSLNIPPMDMFSDPDAITNVQNARSLLTSAYRAYPHY ELEFSILGNDFCPTSLSHSNVELTNLYAWRPKEITQLSTNLWLGYYNVIAICDALDERLP QVQIEKEDDRQEIINISSESKLLKAWCYLQLLKIYAPAYDRNPDDMGIILKSTLGIENKQ RSSIKECTSYIENLLLQTAKHPFNNKNQMWMSNDAAHYLLADLYLYMGQWDKVLECAVPL LSTMPKLESDSYEKEYHSLWTDKNSTERIFAFYMDSPVFTNLEYDRNKGDLFAINPNFAI DKSDRRYDMAIIPKKMYNKQVMLLGKYNKLQKDNMIVSYLNKMRRAGLIFMVAEAYAQIG NNHKAIATINSYRKLTGKNMLTENLNGKNLIDSILYDKYEEFAGEGTNYFDLKRTHNKPL ARLTLWGEGHSAYISEDDYRWTFPIPKAEYRFNLAEINQNKGWYYTNDK >gi|281305290|gb|ADEF01000039.1| GENE 58 70525 - 73647 1751 1040 aa, chain - ## HITS:1 COG:no KEGG:BF3444 NR:ns ## KEGG: BF3444 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 30 1040 2 1016 1016 1018 51.0 0 MLRIKPKHTATATKIVQMTLLLFGNIPCKKSIFVLLCMIGGILNTHAQTSKVFGYVTDTN NEPLIGVSVKVDGTNTMTVTNSEGRFLLSIPRQNSFTVTFSYVGYATKKVKCKDNAPCLN VKLSEDVNQINEVVIRAKSNINAIDLRAKSGAVVNVDMKALKDKPMIDMGLALQGMVPGL MVSNTGELGKAPEIRIRGNSSFRKGNMTNEPLYVLDGKIIAAETFYNLPPQDIASIKVLK NASACALYGVKAANGVLEITSQRGYCGKLTISYSNNIGITGRGKRGVRLMNSSEKLEFER LLQNPATPGYRFSADYYNKYEADNPDKAQLIKEGEVYLNELRKIDTDWFNELIHNNIYQR HSFSLKGGNNSTTYYVSANYANQGGRMKGNDKQRYSVRLSLDQRLGKIGYMMLGVNGAYA KTNTPTGTTFDPTSLVYNLNPYETTSSQLYSYPGQRFKDLLYQFQQDHTDKDVGFSANLT LTPFAGLTLAYIAGADLSFGNNHRFTPATSYSEQHQGIPILRRGIYSKSQNATTNISSNF RATYNQVINDIHDLTLGANIDYYFYDNEGVGITGYGVGNIDSPSAINHSLQGLRQPEIRN PHDRNAQLGIGVVGGYSLKNIYDFYATYKADASSVLPKKKRWNSAWATGIGWTPTNYPFL KGNKIISALNLKASYGVTANLNGVSVSQTIGTFSFSNKGYDEVRPLELLMLYNKDLKAEQ NKSMDAGLTLELFHRITFDANWYNRITEEALLDVPIATSTGFQLMKRNVGILQNNGIELG FNFRIIDNYDSRLNLRANFCYNRNKVIDLYDGNRLYTNEDDILPTYEVGKSYDMLYGLHS LGINPLTGYPVFKTPDNKEKQASEFLTKSDFQSLGHLTPPYNGGLNVDFQYKEFEMNVGF YYTLSGVRQFDYKYVRNKDNANKNAIAGLTEHMWFKQGDEHKIYPTPYYANSVAEVNMAL YATSRTVGSSNMLKLSMVSLRYRIAGKWLEKHLPFLQFASVGFQGSNLYTWTSFKESDPE SGKLSGTLQPVFTFNMNLTF >gi|281305290|gb|ADEF01000039.1| GENE 59 73684 - 74583 630 299 aa, chain - ## HITS:1 COG:MJ0970 KEGG:ns NR:ns ## COG: MJ0970 COG2138 # Protein_GI_number: 15669160 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanococcus jannaschii # 26 115 3 86 143 59 32.0 8e-09 MKNLRKKLLALTFILTIVGSMQAKNALIVIAHGSPMPSWRKPVLDLEPIVRQKLATHPVK GIDYMRVALMEYTEPSVATVVKDCLKQGADTIFALPLFIAPSSHTEEDLPNILGMKYNRY VREELAEENTEMVHTNVPIVMGPTFYYSYVLEKTMLQRVKAMSKDEANEAVVFLAHGDPE RIGFWNMMLEHVQKYIKDNSKITYTDARQIEMGHDFANELLPILKRAAQHKKRILVQGIY LTSDVKRMADRHNMQEKQAELTKDGVEIVYSNEGILPASSDLIANWVIEETTQWLKSKK >gi|281305290|gb|ADEF01000039.1| GENE 60 74865 - 76160 876 431 aa, chain + ## HITS:1 COG:DR0186 KEGG:ns NR:ns ## COG: DR0186 COG1570 # Protein_GI_number: 15805222 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Deinococcus radiodurans # 2 282 25 310 416 172 36.0 9e-43 MKQKLTLYELNELVSETLQTVMPDEYWVEAELSEVREVRGHCYMELVQKDEQTNTPIAKA SAKCWKNKWMLMRPYFERMTGQSLRAGMKVLLKVYANFHEAYGFSWIITDIDPVYTMGDM ARKRQEIIAQLKAEGVFDLQKELTLPLFAQRVAVVSSEQAAGYGDFLRQLQDNDAGLCFD VQLFPAVMQGEKVEQSVINALNQINNQVDNFDVVVIIRGGGATSDLSGFDTILLAENVAN FPLPIITGIGHDRDESVLDMISFQRVKTPTAAAAYLVEHLRNTWHRIDDAEQEIIQIVRH AMELEKNRFDLLTSKIPFLFSRVKLQQLTHLQQCQQRLTTSARLHVHKAQQHIEVHSARL FPTIQRLLLDTRHHLNLLEQRCSLLDPQLLLKRGYSITLHQGRAVRNAHQLKAGDEIETR VEKGIIKSTVK >gi|281305290|gb|ADEF01000039.1| GENE 61 76268 - 76819 340 183 aa, chain - ## HITS:1 COG:SA1710 KEGG:ns NR:ns ## COG: SA1710 COG0847 # Protein_GI_number: 15927468 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Staphylococcus aureus N315 # 6 182 6 178 184 130 38.0 1e-30 MEGLNFIAIDFETATGKRASVCEAGICVVKDGKIVETKSWLIRPEDNAYSYWNIQIHGIH PEDTENAPSFPCVWQEILTYLKETPILVAHNAAFDISCIRKSLELYHLDTLDVDYYCTLR AARHHYDFECHTLGYLCEQFEIPEGTHHRAGDDAEMCARLFLREIKDAGWCELTEMTYCN GKL >gi|281305290|gb|ADEF01000039.1| GENE 62 76821 - 77780 835 319 aa, chain - ## HITS:1 COG:no KEGG:BT_2509 NR:ns ## KEGG: BT_2509 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 317 1 299 300 243 40.0 6e-63 MPANQFGRYVWLVDTLRRYKHLSYKEINAKWQQSGLSYGEGDELPLRTFHNHRKAIYDIF NIAIELDPDVKGYKYHIENPLELEDDSLRSWLIDSYATLNQIQVDSKLKDRIVFEDIPSG NTWLTTFMQAMRENKVMKITHQGFGKDFPNTFEIEPYCLKVVKRRWYVIANNPYYTALNK KHKEEEGYSPRTEIRTYGLDRIIEAAILDKTFEMKTNFDIKKFYEGCTGIIPSDEPIERV VLKAYEQAPDYLRTLPLHESQKEIETCEEFATFSYHVRLTYDFVQLIMQQGDQIEVLEPK KLRDQIRNMANTLLSYYKD >gi|281305290|gb|ADEF01000039.1| GENE 63 77889 - 79988 1510 699 aa, chain - ## HITS:1 COG:Cj0377 KEGG:ns NR:ns ## COG: Cj0377 COG0464 # Protein_GI_number: 15791744 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases of the AAA+ class # Organism: Campylobacter jejuni # 455 671 319 540 570 128 37.0 3e-29 MAKTSIQYIKEAAKKLVDSKLQRLGAAKTQEIFKGVMQSVGLETMGEVYLFVAQFDLTCR DRISDMDDLASYFECSSLDMIEYVPALTSLESKGILVRRGRNEENILKQNYSVCDAVVSA VIDNKPVEIRHNTIEEVQMDKYEFCKRIAEKVESPNIVTNELILFAEKLEKCCQHLTFIR QLTDKVGNIVDRILFYDICHDNFQDDGDGTSDLNTTLKDLYSNISERIATRKKIVERKHI LFTLELIELDDNYDEDLLLTDKGKEFFYAEDLVAFSKLYKYRDIYSFVNGIYDFFHSSKR YNSNRPNEMVTRIINKTVHSYEQTNQHLAEVKRIQNLIPDAFEKMLFYTVAKEMIDGQET SLSHAVKTIYPRQMRKKVLQDFKDRKSELQKKELVVIETNFTLFGEDTLLVMTDKAKEML LGEDAELFMREVSDKQLIPCNKITKKKLFFSPALEKQLSLLRNSLEEEYYQKLCNRIKKN NLPTGIAVLLYGEPGTGKTESVLQIAKATGRAIMHVDISATKTCWFGESEKLIKKVFTDY RRLCTKSKLKPILLFNEADAIFSKRKDVNNGSVAQTENAIQNIILEEMENLDGILIATTN LADNLDRAFERRFLFKIHFDKPTIEAKKNIWMNKLPTLLATDAQTLAAAYELSGGQIDNI VRKAVMQEIVNGNKPTLQSLVEICNEESIKRNGTRRIGF >gi|281305290|gb|ADEF01000039.1| GENE 64 80708 - 80950 93 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTDVLISDFIRIFAISTMGLEGTSDCANHMVRRISCQGSCRARRHGNIFYHIAEQKNGK GNELRRSCATAGKYCAAHGK >gi|281305290|gb|ADEF01000039.1| GENE 65 80880 - 81074 257 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880823|ref|ZP_06289519.1| ## NR: gi|282880823|ref|ZP_06289519.1| putative exodeoxyribonuclease VII, small subunit [Prevotella timonensis CRIS 5C-B1] # 1 64 1 64 64 68 100.0 9e-11 MAKEMNYEEAVQQLESIVQRMENDELDIDELTTELKKAQQLIKMCKAKLTKVDEDIKKIL SQDD >gi|281305290|gb|ADEF01000039.1| GENE 66 81331 - 82101 694 256 aa, chain + ## HITS:1 COG:L156302 KEGG:ns NR:ns ## COG: L156302 COG0220 # Protein_GI_number: 15672731 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Lactococcus lactis # 16 225 11 216 217 110 32.0 2e-24 MGKGKLAKFAEMETFENVFQYPHSVIEQVPFEMKGHWRDQYFKNNHPIVLELGCGKGEYT VGLAKLFPHINFIGVDIKGARMWTGAKQAIEQGLANVAFLRTNIELIDRFFGQDEVQEIW LTFSDPQMKNVRKRLTSTYFMNRYRCFLVDGGLIHLKTDSNFLFTYTLAMVDNNQLPIVQ STGDLYHTTDMDEATKQILSIQTYYESMWIARGLNIKYLKFKLPRNGMLEEPDIEIPLDD YRSYHRSKRSGKTVGK >gi|281305290|gb|ADEF01000039.1| GENE 67 82136 - 83236 955 366 aa, chain + ## HITS:1 COG:HI1277 KEGG:ns NR:ns ## COG: HI1277 COG0489 # Protein_GI_number: 16273192 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Haemophilus influenzae # 52 348 87 367 386 240 47.0 4e-63 MMTIYPKLITDALATVVYAGTKKNLIDSEMLEDDVRIDGMKVEFTLLFPRETDPFLKSTL KAAEAAIHYHVSKEVEVTIKTAFKSTPRPTVDKLLPQVKNIIAVSSGKGGVGKSTVSANL AIALAQLGYKVGLLDADIFGPSVPKMFGVEDAHVYSVEKDGRQLIEPIQKYGVKLLSVGF FVNADTATLWRGAMASNALKQLIADADWGDLDYFILDTPPGTSDIHLTLLQTLAITGAVI VSTPQDVALADARKGIDMYRNEKVNVPILGLVENMAWFTPAELPENKYYIFGKEGCKRLA AEMNTPLLAQIPLVQSICEHGDGGEPSAVDVNTMTGQAFLNLAQAVVTVTNRRNKEQNPT TRVQVK >gi|281305290|gb|ADEF01000039.1| GENE 68 83453 - 84715 798 420 aa, chain - ## HITS:1 COG:PA3400 KEGG:ns NR:ns ## COG: PA3400 COG0842 # Protein_GI_number: 15598596 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Pseudomonas aeruginosa # 49 391 32 367 377 147 26.0 4e-35 MNDGLLYRIKEGIQDMCYIWMKEIRSSFTDEGVLIFCILVPLLYPLLYSWAYNNEVTRNV PVAIVDYSNSQLSREFIRTIDASPDTKVAYYCNSLPEAQDLVAKQVVHGIVYIPEDFSKK IYRGEQTHVSVYCDMSLMLTYKAILQSAQAAASSQNTKLQVQQTGGYTQRDDEIATQPLA VDEVQIYNSAGGYGNAIIPGVLMMIIQQTLLLGIGLAAGTARENNRYQDLVPISRHYNGI FRIVLGKSMAYFMLYIVLGAYLALVVPKFFGFTSLATGSSLIGLLVPYILACIFFGMTLS CLVRYRENVILLVVFTSIPLMFMTGISWPQHNIPGMWQGVSTLFPSTFGVRGFLRVHSMG ATLADIRTEYQALWIQVLVYFILTCLVYRYQIIHTRRQAIDRFEYLKNKAKAAKESKGND >gi|281305290|gb|ADEF01000039.1| GENE 69 84774 - 85937 702 387 aa, chain - ## HITS:1 COG:VC1608 KEGG:ns NR:ns ## COG: VC1608 COG0842 # Protein_GI_number: 15641616 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Vibrio cholerae # 1 338 1 337 387 115 25.0 2e-25 MVKRILQIALRECGILIKNPMYGFCMIIFPLLVIFFFTSLLNEGQPVEMPVGVVDQDNTP TSRRLIRNLDAFQNTQVVAHYPNMNDARQAIQRNEIYAFLLIPNGTTEGMVSARQPKISF YYSSVTLVAGSTLFKDLKTITTLGSAGVSAAKLSAMGKTDGEIRTFLQPIALDLHMVNNP WANYNVYLSTTMIPGVLMLFIFLISAYSIGTELKFKESKKWLGMADNNIYVAMMGKMLPQ TIIFLTIFYAFEIYIYYVLQFPHTGGLLTILITGLLAVLASQAFGIFIFGLVPSLRMSMS LCSLWGVLSFTTSGATFPVFSMNPMIEAMAQLFPLRHYYMLYQMCIFNGFPLTDAWFNLL ALGIFIFLPVFTMRNIKRAMLIYKYIP >gi|281305290|gb|ADEF01000039.1| GENE 70 85983 - 86972 961 329 aa, chain - ## HITS:1 COG:HP1488 KEGG:ns NR:ns ## COG: HP1488 COG0845 # Protein_GI_number: 15646097 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Helicobacter pylori 26695 # 37 326 36 325 329 215 41.0 1e-55 MSTKTQHNNILLAILGFAAAVILVAIIGFFTLGRTPEIVQGEVEVSEYRVSSKIPGRILE LRVKEGDYVRVGDTLAILEAPEMNAQEQAASATQQAAAAMSDMADNGARKEQIQGAYQLW QQALAACDIAQKSYQRVQNLFDQGVMSAQKRDEAFAAYKAREAQVKAAKSQYDLAKNGAR TEEKRAAAKQAQAAQGAVNVVKSLLRETVQIAKVEGEVSTIYPKEGELVGIGSPIMSISV MKDLWGTFNVREDQLKGLKVGDTFKAYSPAFDKEINMKVYYIKDQGSYAVWKATKTNGQY DLKTFEVKARPIQKFEGLRPGMSLIIRES >gi|281305290|gb|ADEF01000039.1| GENE 71 86980 - 88467 1161 495 aa, chain - ## HITS:1 COG:HP1489 KEGG:ns NR:ns ## COG: HP1489 COG1538 # Protein_GI_number: 15646098 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Outer membrane protein # Organism: Helicobacter pylori 26695 # 22 463 47 471 510 93 22.0 9e-19 MNRLLTIFMLVGTVLPLSAQTKLTLDSCRAMALRNNKQLNVARLQQDVAKNTRKALRTKY LPKVDAIGGYTYFSREISLLNDQQKAGFGSMGTQLNNAIGGKISGNIATLVQQGVLSPQM AQHMGALLGTIGESVAKTGNTIGGSINDALRTDTRQVWAGSVVVKQPIYLGGAIIAANNI ADITEQLAANDLTLRTQTTIYDIDHAYWLVVSLNQKLKLANSYRQLVGKLNDDVHQMIEQ GVATRADGLKVEVKVNEADMQITQAQNGVSLAKMLLCQLCGLSLENDITLADEDNEMLGT VMTPNSYPNTDLISTRPELRMLQNTIDISKENTKLVRAAYLPHVALTGGYIISNPNMFNG FQRKFSGMWNVGLMVQIPVWNWFECDYKVRATRTSTQIAELNMSDVQEKIELQVTQSKFK FKEARKKLAMALKNISSAEENLRCANLGFKEGIMNATEIMAAQTAWQKAQTQKIDAEVEV KLAEVDLKKALGILQ >gi|281305290|gb|ADEF01000039.1| GENE 72 88486 - 89358 760 290 aa, chain - ## HITS:1 COG:no KEGG:PRU_1259 NR:ns ## KEGG: PRU_1259 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 289 1 289 290 308 60.0 1e-82 MKKKVVIPILVFIILLLAGVGILTYYLFEQKEQNKEMQALAELDKKEMENEYQRFANQYS EMKTQISNDSIIAQLTKEQERTQQLLNELRQVKSNDAREIARLKRELATVRAVLRSYVLE IDSLNRLNQNLTAENTRIKGEYEAANRQIEGLSTEKQNLSEKVAIAAQLDAININMSLRD KRGRSTSKMKKAKTLQVDFSIAKNVTATNGMRTLYVRIVSPTGTVLGGAGTFPYENKNLQ ASMKKTVEYGGAQTNVTTYWNIDQALVAGSYQVSIFAEGNMIGSRSFTFN >gi|281305290|gb|ADEF01000039.1| GENE 73 90179 - 90628 499 149 aa, chain + ## HITS:1 COG:Cj0271 KEGG:ns NR:ns ## COG: Cj0271 COG1225 # Protein_GI_number: 15791642 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Campylobacter jejuni # 1 148 3 148 151 145 47.0 3e-35 MNIGDKAPEILGRDQDGKEVKLADFKGKKLVLYFYPKDNTPGCTTEACNLRDNYQRFLDA GYAVVGVSVQDEKSHKKFIEKHELPFPLIADTEKTLNNAFGVWGEKSMCGRKYMGTFRTT FIIDEEGKVERIITPKEIKVKEHAAQILG >gi|281305290|gb|ADEF01000039.1| GENE 74 90838 - 91680 474 280 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880832|ref|ZP_06289528.1| ## NR: gi|282880832|ref|ZP_06289528.1| hypothetical protein HMPREF9019_2124 [Prevotella timonensis CRIS 5C-B1] # 1 280 1 280 280 540 100.0 1e-152 MQVKCPKCRLRYETNIPFGMTEVSCVCPRCGTPFTHLVDSQQEEDSVGEFDRTERVYNQQ TPTDSPKGGALDNGETSSDTPADRTSTTSHPSSSEILDWQKPNASTASKPSRPSSVTGKA TPTQQQKQQGHFYTSCTFIFFVVLIMVVFSIRSCWKSAKTHEYNGASLSETTMGVPSQDD NLTAVQDESVDPYDEIHPGKAPSWIQGNWKFTTEYGDILLSIHGNKITESIDGEKSSGTF YYENRKLVCDFGDPNNIMIYRLDVERQQIDAGNGMLMTKE >gi|281305290|gb|ADEF01000039.1| GENE 75 91722 - 92288 491 188 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880833|ref|ZP_06289529.1| ## NR: gi|282880833|ref|ZP_06289529.1| hypothetical protein HMPREF9019_2125 [Prevotella timonensis CRIS 5C-B1] # 1 188 1 188 188 335 100.0 1e-90 MFESKIERQIQSLLEPYEDRIQELERHLIQLNKRVESLEQQIEAHSSHPIEISTDKENKE TVAAQPSIVNSAPTDVQTAGKAPQHRILFMTAPNDEGVFAGSSETEQVGKSIYQLSTTDG VHGTFIMLDTPDAIATAMISVSQFVKTACKVQGNLQLYPQQIQTLEEGTAVLENDSWRIT NKAIVKFG >gi|281305290|gb|ADEF01000039.1| GENE 76 92316 - 95789 2393 1157 aa, chain - ## HITS:1 COG:no KEGG:Slin_3305 NR:ns ## KEGG: Slin_3305 # Name: not_defined # Def: hypothetical protein # Organism: S.linguale # Pathway: not_defined # 1 1156 1 1143 1144 568 33.0 1e-160 MSKILSYNKKTTGEGWIPLTSQYNADEIAMIEDPNDGLSQQPRTAIPSPFAQMDLVKNAF KRLSMHERLQGEAMDEKLVANALDVAQLFFNYSELRNQLHIIEWNRSTELQRLKDSPQHQ LLGETLEMFLQQDQEAFNFDSMDRLYFLVYGNQVIGSTSPVTLFMASPNAKEGMYDLPVE QNVNLFELWRPLYMRDTRFIKYIYALFTAYPNLKNQCEEVNSYLITNFSLLSKTVQDEIL REIGNPAAMDLGHVENARSFLENNFMPLDEGIQALGVPFYSARPEDIQQAIAESDFKMIP SRSVEDVVPLVLQNHLLATQVDTFKYITGTWDDNTQITPADYAVAPEKRILPATTHQYPW LTDDDFFQPSLIKLDYTLDKDCFFEGNLTVGSRETDQCSFVLPLKPLYFKYFDVQDLWGT IQGRPCFELQHTVSGSIEKVTAILRIPVKKERHFITLQRTYVSTSNIDFAYDEKNNYGHF ITVPFALSVFPFVRAQGLKQYNVQLVDRALGALENFNIDLTFLKNGYRNGMQEDEVLIRN RSLKSEKRVGSTYYRLQSDFDYIAITLSDDHGNTSAQGVLCPRWPSYVPGHDAYTFSVDF GTTNTHVESMKADNMPEPLSISSTARERLIATSYNGESILYDVIMKQEFLPKVIGESYGF PQRTVLSECERLDAMNVDQIVALGDANIPFIYEKESIGYGNRIVPNLKWSTEMANSKRIR AYLMELALLMRTKVLLENGDITKTRLVWFYPLSMKVGNVRKLGEMWAKTFTEVFGIPVTN NNLIQMPESVAPYYFYKSSSSFKGAANTVASIDIGGGSSDIVVYESNAQQPTILTSFRFA ANVLFGDGFSDVPQGDTNPMLIKYVDYFKRLFDSDDDRYGELNGILDDITAKRKSDDINA FLFSVINNKVVAQNDVFSYNMRLNEDEQRKIIFIYFFVTLIYYVAKMMKHRNLDMPRSIM FSGTGSKVLDIVGTQRDLDLISQAVIERVYGQKYNADGFNIVMEKNEPKQITCRGALMQV NDSRGVEEVMQLNRLMDSFDNSIKYNYSMIEKETVRYEDMENPQVRAQIIAQVREFNDFF CQLCEDIHVVDRFLVDNRSLQMFKELVNKDLEHHLINGWNFVNKNQEEKNGSDAIEDTLF FYPIIGSIRDNLINHLH >gi|281305290|gb|ADEF01000039.1| GENE 77 95824 - 97356 902 510 aa, chain - ## HITS:1 COG:no KEGG:Slin_3304 NR:ns ## KEGG: Slin_3304 # Name: not_defined # Def: hypothetical protein # Organism: S.linguale # Pathway: not_defined # 1 505 6 489 496 356 40.0 1e-96 MFLVGGTGSRVMRPLIMQFAAGVHPTTESGKPMPLEVIPIIVDPHKANEDLKRTDNLLRW YKQIRKSLYGESVDVTHGFYSVKISTLSDILPNGSNLSDTFIFNMGSIASQKFQDFISYA TLDSGNQALCSMLFSNDQLNTKMDIGFVGSPNIGSVALNQFKDSEEFRQFSNVFQKNDRI FVVSSIFGGTGAAGYPIIVKNIRNAGNNIQINNRGDLRDAKIGTLTVLPYFNVQQDENSP ISRADFISKTKSALFYYHDNLTGIRQGGVDLPKSKVNVCYYLGDEVPSNPYFNDPGGNGQ RNDAHVVEYVGALSILDFLQIPDSQMETIDGMALNPIFKEYGLANDKRTLSLKDFGISTR NQINKQMAKFYLAYLYITNQLQNDIGRGYTEDKPEIGKSFVSTSFYNTLTSNFFVAYRTW LKELKVNQRSFIPFNLTTDKLSDALTDIAPKTGLFKSTIDYKTVLSMLNKTSQQATKSHK YGEEQVAYKLMDLLDQSLDKLLDEKYNSIV >gi|281305290|gb|ADEF01000039.1| GENE 78 97413 - 97859 160 148 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880836|ref|ZP_06289532.1| ## NR: gi|282880836|ref|ZP_06289532.1| hypothetical protein HMPREF9019_2128 [Prevotella timonensis CRIS 5C-B1] # 1 148 1 148 148 241 100.0 1e-62 MKKNTILLITGAILTLLFIIFSTPLFESLFYSREFSNEMYAANLYLVVAIVTAVVAWGLS GIYYYVINSVSFSRWYHWLIMLCVAVVIVPLITYTYADHVFADDGLDFSGQLSAFCVVNL AVEAVLFIIASYSMRWWSSNCRHTPIPE >gi|281305290|gb|ADEF01000039.1| GENE 79 97934 - 99427 1228 497 aa, chain - ## HITS:1 COG:no KEGG:Slin_3302 NR:ns ## KEGG: Slin_3302 # Name: not_defined # Def: hypothetical protein # Organism: S.linguale # Pathway: not_defined # 71 494 76 502 502 233 31.0 1e-59 MKKILCSWVILSFMTVAAFLVSCGNSAKKDLNHLLLELAGDDAVIDHDDWMTIESFLDSQ KAHFKEFYEGGKLDKEEVKEYIEDFFSRGREAKKIDFVGMNDEPIKINFFLERSGSMIAY DSPQGDGSFKAAIVQMLNNLPGNNSQHKIYVVNSSINPYPQGIQQFVNDNDIFATTKGIG DPSYTDFGAIFNQILNKTKDDEISILMTDMIYSTKNMVGVNPQKVFAEAQSMTNTVFKDE VKKKSMLIVKMMGSYDGLYYPYNSPSKGTAYHGKRPYYIVIVGNNENIARLTTDPDYGSF AKLSELKGYQNMYLFESDDVYEPYYSLLLSHPKIRGRFQPERGQGSQIKDIEGVKQDRNS GDVRLVLAVDLSKMLIDKDYLTDIRNYKIESDDKITIEEIRPITKADITPAEKKYIGSAT HLFILSFEKISNNQDVDIKLMNRLPAWVAASSSDDDTTVDSKTTFGLKYLLQGIYNSYQK KSDGEPYYFELELEFKR >gi|281305290|gb|ADEF01000039.1| GENE 80 99749 - 100336 348 195 aa, chain - ## HITS:1 COG:no KEGG:PRU_1792 NR:ns ## KEGG: PRU_1792 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 2 176 21 191 191 135 44.0 6e-31 MKNLIGLLMLLLLSNGLSSCTEKKQDSNIIATKPKPVVKKETQSMGDYHQSMPVEWLGTN YVVEVSRQSDKALPLADDGMGNKYYDNQITLKILRHDHSEFFNRTFSKADFVSYVDEAYR KNSALLGIVFDKAEGNYIQFAVSVGSPDKMSDEYVPLVMKVSNLGAITIYKDTQLDTRNT RLDDTDSDPEEEDDI Prediction of potential genes in microbial genomes Time: Sat May 28 07:10:20 2011 Seq name: gi|281305289|gb|ADEF01000040.1| Prevotella timonensis CRIS 5C-B1 contig00089, whole genome shotgun sequence Length of sequence - 1000 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 172 - 245 87.1 # Ala TGC 0 0 - TRNA 672 - 748 83.3 # Ile GAT 0 0 Prediction of potential genes in microbial genomes Time: Sat May 28 07:10:22 2011 Seq name: gi|281305281|gb|ADEF01000041.1| Prevotella timonensis CRIS 5C-B1 contig00085, whole genome shotgun sequence Length of sequence - 10368 bp Number of predicted genes - 8, with homology - 7 Number of transcription units - 3, operones - 1 average op.length - 6.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 86 - 310 120 ## + Prom 570 - 629 3.9 2 2 Op 1 . + CDS 664 - 861 231 ## BT_3153 hypothetical protein 3 2 Op 2 . + CDS 867 - 2747 603 ## slr6050 hypothetical protein 4 2 Op 3 . + CDS 2744 - 3868 640 ## COG0270 Site-specific DNA methylase 5 2 Op 4 3/0.000 + CDS 3855 - 5861 1324 ## COG1401 GTPase subunit of restriction endonuclease 6 2 Op 5 . + CDS 5875 - 8190 2052 ## COG1700 Uncharacterized conserved protein 7 2 Op 6 . + CDS 8210 - 9283 545 ## gi|282880846|ref|ZP_06289540.1| hypothetical protein HMPREF9019_2136 + Term 9316 - 9369 5.1 + Prom 9332 - 9391 2.0 8 3 Tu 1 . + CDS 9428 - 9784 165 ## BF2150 putative IS element Predicted protein(s) >gi|281305281|gb|ADEF01000041.1| GENE 1 86 - 310 120 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPRLAGRSGASRQPNAFQRAASAHRPRASLASNALCPFFSRSNNPGLILAIQSAGVSRGR NGFRKDKSGEKLAE >gi|281305281|gb|ADEF01000041.1| GENE 2 664 - 861 231 65 aa, chain + ## HITS:1 COG:no KEGG:BT_3153 NR:ns ## KEGG: BT_3153 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 2 64 47 109 114 71 55.0 8e-12 MKNMNRIKSVLADTGHTGKWLADQLEKAPVTISKWCTNTSQPSLETIHRIAEILNVQPGD LLTKI >gi|281305281|gb|ADEF01000041.1| GENE 3 867 - 2747 603 626 aa, chain + ## HITS:1 COG:no KEGG:slr6050 NR:ns ## KEGG: slr6050 # Name: not_defined # Def: hypothetical protein # Organism: Synechocystis # Pathway: not_defined # 239 621 699 1094 1100 154 30.0 1e-35 MTSNAIFKSFCKLHNEIKQYAEKLNADKGNVVSLSVLLYYIHLSISEEQSLFAATNRRES YIKDIYSISQTDRKDIKKVIDNIGGEKSLVFLNTISKWGISKSNYESLFRIIFEKYLTKT DTASYYTDDLTTTYIVEGTVVGFLYSLFDKECIVNHVLSLNDLSKFISTLDNKEITLMKN HVATIKLIDPTCGTGSFVIKAINILCNIYKLLGMPLGASGIQHIIKNNVFGVDIDEETLE ILRYRLFSTALYEFSVKLTKKDLKNFKLGNTICDDTFLWEKEFRMVFKNGGFDCVVGNPP YKEYTVAKLNYSLPEYFKTVPVGNLYAPVIERSICNLVSSRGTIGFIVPISIVSTLRMEP LRKLLQDKFTELFFINFADRPCSLFLGVHQKLTVIIGTRNRSNQSVFVSKYKHWYKDEWN ELYKDIQFVQLDKDALSGKPKFCSELSKSISDKVINNSQISLLENVCANGEYAAWLNQRA TFWCKCFTHAMKSNEYKKYTFSKEDDVCLFSAILNSSLFYYIWEIYSDCWHITKKELDLI HLDFSLVDSKAKKRIVKLYKQLEEELENSKKYIGSVQTDYVYQHKLHKTTIDKIDILIGR LFDLNDDEINEIINYQLAYRLNTERK >gi|281305281|gb|ADEF01000041.1| GENE 4 2744 - 3868 640 374 aa, chain + ## HITS:1 COG:HP0051 KEGG:ns NR:ns ## COG: HP0051 COG0270 # Protein_GI_number: 15644682 # Func_class: L Replication, recombination and repair # Function: Site-specific DNA methylase # Organism: Helicobacter pylori 26695 # 3 362 5 350 355 213 35.0 5e-55 MNVVDIFSGVGGLSVGFEKAGFNVVLANEIDEQIAQSYKRNHTHTIMVNEDIRSFVDHFD DSISKATERLNSNCKEKLYQELNDINVVIGGPPCQGFSMAGSRIRKTSEFIDDSRNFLFR YYFKIIQKFEPQYFVFENVVGILSSKNGEILETIKSIFEDDSNFKNGRYYLHIKVFKAEE YGVPQQRRRVIILGTKFDFDLDRELKLMRESLPTELQSVFNRRETIRDAIFDLKDIATDG SSSVPNHVSSKHNGIALRRMKQIIANENWQSLDEEIHSVHSGAYGRMDWDKPSMTITTRF DTPSGGRFTHPDLDRTLTAREAARIQTFPDDFIFSGSKTSICKQIGNAVPPRLAEFLAHF ILYLNSKYNVNENK >gi|281305281|gb|ADEF01000041.1| GENE 5 3855 - 5861 1324 668 aa, chain + ## HITS:1 COG:MTH501 KEGG:ns NR:ns ## COG: MTH501 COG1401 # Protein_GI_number: 15678529 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Methanothermobacter thermautotrophicus # 271 666 226 544 546 134 27.0 5e-31 MRISDIKKVEIASADNMDSVWYITKQNQSFADLCYMSHILEDWNNNEFENYESFFNRNKT KQEYGSLSENTPHRATINCVPAGLLTTNDPYDSDNLTPLYYSIKERCNANFANTQSYQDL INNQLQSFVLRVNNNNMNPLLFLLKILLQVGDATGEYKITINEFKLFVATTSLWKDYFKV TDSILRYREDSVYKNKCDNVRTQSVQDVRIQKFLANHEFIETEGKELVLQDQFVMRARKL VANFEINGTTTERSGLTYYVNGKDATLSKDVLSYLSAIRTKPFLLLAGISGTGKSRIVKE MAYASCPSEGDLREDKTSPGNYCLVEVKPNWNDSTELLGYETVLDGGNYHLTKFVKFLIK AMQHENVPFFVCLDEMNLAAVEQYFAEFLSILESRKDVGGTIKSEPLIPAAIFNKYDNKL FKELFPSKEKQEKGRSYPVVDDELAPYGNTTYDTLREEGLRIPRNLIVVGTVNMDDTTYQ FSRKVIDRAMTIEMNEVNLNDMFDTEKPDALSYREDVVDKSLFFAPFAQSNNALQQMNND ERELLAEKVKATIGQTNADGTTTPDSLEAILGKTPFRIAYRVVNELILYFYTLRQENKKA DFDELYNKALDNILMMKVLPRIEGNEDLVKEPLAQLATWTEVAYPKANAKIIEMRERLER SHFTSFWP >gi|281305281|gb|ADEF01000041.1| GENE 6 5875 - 8190 2052 771 aa, chain + ## HITS:1 COG:MTH502 KEGG:ns NR:ns ## COG: MTH502 COG1700 # Protein_GI_number: 15678530 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanothermobacter thermautotrophicus # 269 596 260 557 567 79 26.0 3e-14 MDALKFADKAGNVEITITTRSIKNSLRRLKSRVGEDAAMHYCDYRSSAEGTLQLAGVPPL PEGKEWAALPPVMFETCQYNITLHFTDIEGEPRIIHINKDVAEAFQWYAAGNGGFLMAAL DFLNEPGIFRLQYAYKPKGLTERLAWIEFRVVSPKLDTKRDLMHMMSMINAEYENLVFKY LTKTFQSLNLSSSQSNEMIWLSIFKGVIDEYITALEFVSNRPNTRGERITYYDRVDKIKR WSPKMLNQYEEQKAAKTLDHYLFRHDEEQKTIDTKENRFVKYTVKQIGKKLVDVLGALQR NYQGQLLGEELDWLKGTGERLQNILHHRIWRQIGEFKGFRQESSVLQKRTGYSQIYRLWY ILQSGLGFYEGSNEIGVRPIWELYELWCFLKMKQLVMDVLEIDLTNPDQAALVEENLKTM LTPFIDSTVEHKITYHNRFNDDIVELCYQHTYNRRSGEVHTATTEQRPDIVLNIQKADGF VLTYLYDAKYRVLDDTNKDIDNLEDDYDISDYPPPDALNQMHRYRDAIYYGSTHFKHTAK EIIGGYILFPGRYRKGNGSESPYYIKSIKEVNIGAFPLLPNGEQPEDEGKMLRDHLVQIL RTEERYEQIKDSIPQKGLSYTIVPDESDLVLVGYYKSGQLETIKKNKLYYVRAGMDQGSL RLTAGFEHCHYVLLHNKQSQELYKLSANGPRIVSGEQLRGKGFNAKRDFYLAFDLESTEP IVHVHKPDGSVFKVKKSPTPYAKDPYFKTLAELLEEVKAESKSEVKLFGDV >gi|281305281|gb|ADEF01000041.1| GENE 7 8210 - 9283 545 357 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880846|ref|ZP_06289540.1| ## NR: gi|282880846|ref|ZP_06289540.1| hypothetical protein HMPREF9019_2136 [Prevotella timonensis CRIS 5C-B1] # 1 357 1 357 357 711 100.0 0 MSYYEEEINYKPILKTAKELLKKRGYIDCCSILDEGTISVVCTDYDNWNGGTYGYTIYVS LPVSQYSAYTSDRINEFESEISNTFNEVIKADNNCSFITQISPWFSPKDIDSTLIGGEIG KKELLSKIEEISNLLIKVATGGPSFNLVDGDYKKLYNWLSDKLKTLNLDNPNPYFSLWDW YHYYSPNLQRWQDRRVYINELYKPLKKIISDITIRQSGNPIVIDLTPWDRIRRTYAKIQA DSSQAKIVDEFQAVGLLCREIIISLGQLVYNKDVYGAVDSQNKPIGKTDGFRMLEAYFTY KLHGTHFEEYRAYAKTTNKLANALTHERNATKKDMMLTVSATTALVNIVGILEEQYI >gi|281305281|gb|ADEF01000041.1| GENE 8 9428 - 9784 165 118 aa, chain + ## HITS:1 COG:no KEGG:BF2150 NR:ns ## KEGG: BF2150 # Name: not_defined # Def: putative IS element # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 102 1 102 315 75 43.0 8e-13 MYHQLPWEQRSQIFALLQKKIKRKEIALIVGTSEATISRELKNNSTPSGKYIRTKAHDMA MQRRNRTVKNSKLSDELVWRIKKYIINDQWSPRQISGYLRKNEGDKGVPPVHLQHHPQ Prediction of potential genes in microbial genomes Time: Sat May 28 07:11:05 2011 Seq name: gi|281305230|gb|ADEF01000042.1| Prevotella timonensis CRIS 5C-B1 contig00002, whole genome shotgun sequence Length of sequence - 61573 bp Number of predicted genes - 53, with homology - 47 Number of transcription units - 32, operones - 11 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 2 1 Op 2 . + CDS 822 - 3335 1577 ## gi|282880849|ref|ZP_06289542.1| putative lipoprotein + Term 3364 - 3417 10.2 + Prom 3377 - 3436 5.2 3 2 Op 1 . + CDS 3532 - 4113 484 ## PRU_2936 hypothetical protein 4 2 Op 2 . + CDS 4119 - 4304 288 ## PROTEIN SUPPORTED gi|34541715|ref|NP_906194.1| 50S ribosomal protein L32 5 2 Op 3 . + CDS 4304 - 5323 1003 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III + Term 5349 - 5396 5.6 6 3 Tu 1 . + CDS 5410 - 6291 656 ## COG1159 GTPase + Prom 6300 - 6359 3.0 7 4 Op 1 . + CDS 6403 - 7716 987 ## COG1160 Predicted GTPases 8 4 Op 2 . + CDS 7734 - 8219 195 ## gi|282880855|ref|ZP_06289548.1| hypothetical protein HMPREF9019_0111 9 4 Op 3 . + CDS 8308 - 8703 283 ## PRU_2941 putative lipoprotein + Term 8873 - 8911 1.3 + Prom 8964 - 9023 7.5 10 5 Op 1 . + CDS 9243 - 9494 210 ## 11 5 Op 2 . + CDS 9586 - 9807 321 ## PG0221 hypothetical protein + Prom 9931 - 9990 7.3 12 6 Tu 1 . + CDS 10012 - 12345 1133 ## gi|282880859|ref|ZP_06289552.1| hypothetical protein HMPREF9019_0115 + Prom 12398 - 12457 7.0 13 7 Op 1 . + CDS 12480 - 14672 1758 ## gi|282880860|ref|ZP_06289553.1| hypothetical protein HMPREF9019_0116 14 7 Op 2 . + CDS 14672 - 15244 504 ## PRU_1183 hypothetical protein + Term 15257 - 15298 -0.9 15 7 Op 3 . + CDS 15312 - 15836 368 ## BT9727_0833 hypothetical protein 16 8 Tu 1 . + CDS 15915 - 16859 784 ## BT_2509 putative transcriptional regulator + Term 16929 - 16964 -0.6 - Term 16912 - 16955 4.4 17 9 Tu 1 . - CDS 16960 - 17778 253 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 17804 - 17863 5.8 18 10 Tu 1 . + CDS 18268 - 19203 613 ## BT_0234 putative transposase + Term 19249 - 19287 2.6 + Prom 19210 - 19269 3.6 19 11 Tu 1 . + CDS 19345 - 20463 772 ## COG4974 Site-specific recombinase XerD + Term 20488 - 20537 15.2 + Prom 20465 - 20524 6.1 20 12 Tu 1 . + CDS 20711 - 21568 503 ## BF4230 putative protein involved in transposition + Term 21629 - 21689 1.2 + Prom 21671 - 21730 4.7 21 13 Op 1 . + CDS 21768 - 22142 282 ## BF4232 excisionase 22 13 Op 2 . + CDS 22148 - 23245 615 ## BF4233 hypothetical protein 23 13 Op 3 . + CDS 23249 - 24364 655 ## BF4270 hypothetical protein + Term 24466 - 24518 8.3 + Prom 24382 - 24441 1.7 24 14 Tu 1 . + CDS 24647 - 26050 740 ## BVU_1439 mobilization protein + Term 26069 - 26124 12.5 - Term 26060 - 26109 9.1 25 15 Tu 1 . - CDS 26143 - 27108 529 ## BT_4507 beta-lactamase precursor - Prom 27186 - 27245 7.0 + Prom 27143 - 27202 6.8 26 16 Tu 1 . + CDS 27363 - 27584 142 ## BVU_2907 hypothetical protein 27 17 Tu 1 . - CDS 27995 - 28516 263 ## COG0350 Methylated DNA-protein cysteine methyltransferase - Prom 28544 - 28603 3.4 28 18 Tu 1 . - CDS 28743 - 28925 121 ## + Prom 28726 - 28785 5.5 29 19 Op 1 23/0.000 + CDS 28837 - 29532 643 ## COG0767 ABC-type transport system involved in resistance to organic solvents, permease component 30 19 Op 2 . + CDS 29563 - 30321 333 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 30338 - 30381 -1.0 - Term 30135 - 30168 -0.6 31 20 Tu 1 . - CDS 30357 - 30590 173 ## gi|282880878|ref|ZP_06289571.1| conserved domain protein - Prom 30645 - 30704 5.1 + Prom 31000 - 31059 4.2 32 21 Op 1 29/0.000 + CDS 31137 - 32492 1884 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Prom 32547 - 32606 8.9 33 21 Op 2 24/0.000 + CDS 32626 - 33291 777 ## COG0740 Protease subunit of ATP-dependent Clp proteases 34 21 Op 3 . + CDS 33302 - 34546 260 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 + Prom 34595 - 34654 4.0 35 22 Op 1 1/0.000 + CDS 34674 - 36851 2000 ## COG0514 Superfamily II DNA helicase + Prom 36939 - 36998 8.0 36 22 Op 2 . + CDS 37025 - 38512 1741 ## COG0516 IMP dehydrogenase/GMP reductase 37 22 Op 3 3/0.000 + CDS 38564 - 39997 1040 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 38 22 Op 4 . + CDS 40033 - 41502 1121 ## COG0760 Parvulin-like peptidyl-prolyl isomerase 39 22 Op 5 . + CDS 41556 - 43178 716 ## PRU_0035 hypothetical protein 40 22 Op 6 . + CDS 43175 - 43471 133 ## gi|282880887|ref|ZP_06289580.1| conserved hypothetical protein 41 22 Op 7 . + CDS 43486 - 45300 1336 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) + Prom 45329 - 45388 6.5 42 23 Tu 1 . + CDS 45469 - 46623 996 ## BVU_0414 major outer membrane protein OmpA + Term 46660 - 46700 8.2 - Term 46929 - 46976 7.1 43 24 Tu 1 . - CDS 47032 - 48021 1014 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 48168 - 48227 79.2 + TRNA 48150 - 48227 93.9 # Val TAC 0 0 44 25 Op 1 . + CDS 48507 - 51602 1849 ## BF0944 hypothetical protein 45 25 Op 2 . + CDS 51615 - 53285 1197 ## BF0863 putative outer membrane protein + Term 53428 - 53464 1.8 + TRNA 54157 - 54231 93.3 # Val TAC 0 0 + Prom 54159 - 54218 78.9 46 26 Op 1 . + CDS 54377 - 54634 177 ## 47 26 Op 2 . + CDS 54690 - 56039 1297 ## COG0015 Adenylosuccinate lyase + Term 56068 - 56121 -0.4 + Prom 56079 - 56138 8.1 48 27 Tu 1 . + CDS 56201 - 57613 1279 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 57618 - 57677 6.5 49 28 Tu 1 . + CDS 57741 - 59135 1214 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 59144 - 59195 5.1 + Prom 59281 - 59340 7.1 50 29 Tu 1 . + CDS 59363 - 59740 458 ## COG0251 Putative translation initiation inhibitor, yjgF family + Term 59872 - 59933 -0.8 51 30 Tu 1 . - CDS 59900 - 60907 1125 ## COG0136 Aspartate-semialdehyde dehydrogenase - Prom 60955 - 61014 4.0 + Prom 60870 - 60929 5.4 52 31 Tu 1 . + CDS 61020 - 61223 83 ## + Term 61299 - 61367 -0.8 - Term 61200 - 61240 -0.9 53 32 Tu 1 . - CDS 61341 - 61454 88 ## - Prom 61504 - 61563 4.7 Predicted protein(s) >gi|281305230|gb|ADEF01000042.1| GENE 1 601 - 825 270 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQDYKQKKRSYVVPQCEVYQIGTCNLMDISAPMGGFEYGGELSKRHEFDNESIFDSNDFT WETDNSQIGKKIKP >gi|281305230|gb|ADEF01000042.1| GENE 2 822 - 3335 1577 837 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880849|ref|ZP_06289542.1| ## NR: gi|282880849|ref|ZP_06289542.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 837 1 837 837 1675 100.0 0 MTPLMRINKQKTLALLALLVIACTGLTSCADENLVNNNGGENVNPADAKLATTTVTFSAD AGMQLPNVTRALDPDAPATRAVSLNDLYMPLAEGSNLKARVFVVKADENSTKMINGEKAV DPDKVVMGAGEIKWDVVSEHKGGGVHLYSKEDLLTLTWLDNSAVIRPDEEWYICGIIGGE YSEDFKEAAKKADNANQKKLYNQLYNFYVKMNPSSEHNTRDEKGRLRVTAAFSTGWTKLK VEKPNVINLRKWAFDAMGTLLRFKVKRDTKLVKPEAHKYTFASSQLTANGGFMMMPMSLF AKGNVLDMEHGKGLDCEIRPWEASIDRNFYWQYDDERHLHFNNVTDTDPSKENTGVYGAP FYEYRYTCDAAKMRGRKADKDYDEFYVWGMPVPLPNYNGTTQITAERGSFMLGRKQPKDS KYPYADEWLYAKAVDPATNSNEYKLKDFAQTRGKAFSIELGVCRPCFSAKEGDKLKYAWP NPLERLAVTNSMTNQKGWHDSNKPNGNDKGYGEINNWTLKQGIFKIKFVTWGQSMLPANY HVPNSEEWGCAIPNIYTSIHDRWLEKNLLSWDYITPGATPWFEMYNPGEDDPRSNIAAGE THNNNKLSLQEELHWGEYPAFYSYFMQDREKGEMFAIRFDGTNKDAKLKNQGYTMGRRYR CAYRWRLINMGGKGDGANDSHGMRLVVQSRWIGNANVGLNDIKDDAWWGKSSPDNPLFET DCYRVLPLVGYPYTGSGWTYYVSYWSRTRWKSISVTKDDESTNRTMCFRRIGNDGFERGH NDGLKYFLPVRLFVNRGVDEFGGEAPRQKQHDKDQTTLISRKADGNVTNWNWTPKNY >gi|281305230|gb|ADEF01000042.1| GENE 3 3532 - 4113 484 193 aa, chain + ## HITS:1 COG:no KEGG:PRU_2936 NR:ns ## KEGG: PRU_2936 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 17 188 1 172 173 196 53.0 3e-49 MNISENICNFASQSVNMFDLEPFKIDLRAVNQEVEHFEFTLTDEYFEAIKAPDIHKGNLS VELTLRKMAGSFMLSFHIVGIVVVQCDRCLDELNQPIETDERLVVRLGTEYSDEDDQVTV PEDEGIIDTSWFIYEFIDLSIPIQHVHAPGKCNHVMMRALNNCLVTRSNEATENDPIDPR WAQLEKIKTIIKD >gi|281305230|gb|ADEF01000042.1| GENE 4 4119 - 4304 288 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|34541715|ref|NP_906194.1| 50S ribosomal protein L32 [Porphyromonas gingivalis W83] # 1 60 1 60 61 115 85 6e-25 MAHPKRRQSKTRTLKRRTHDKAVVPTLAVCPNCGAYYVYHTVCPTCGYYRGKVAIEKEVA E >gi|281305230|gb|ADEF01000042.1| GENE 5 4304 - 5323 1003 339 aa, chain + ## HITS:1 COG:CAC3578 KEGG:ns NR:ns ## COG: CAC3578 COG0332 # Protein_GI_number: 15896812 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Clostridium acetobutylicum # 8 328 6 323 325 278 46.0 9e-75 MGRINAIITGVGGYVPDYILDNEELSRMVDTSDEWIMTRVGIKERRILKEEGLGTSYLAR KAAKQLIQKTGVDPDTIDALIVATTTPDYKFPSTASIVLGKLGLKNAFAFDLEAACCGFM FALGTASSMIESGRCKKIIVIGADKMSSTVDYQDRQTCVLFGDGAGAVLVEASEDTEYGM QDMFFRTDGKGLPFLHMKAGGSVCPASHFTVDHRLHYLYQEGRNVFRYAVTDMSDDVLEI MKRNNLSKDDVDWVVPHEANLRIIEAVTKRAELSMDKVAVNIEHYGNTSAATIPLALWDY ESKLKKGDRVIFTAFGAGFVHGASFFKWAYDGATEATKK >gi|281305230|gb|ADEF01000042.1| GENE 6 5410 - 6291 656 293 aa, chain + ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 2 290 4 294 299 243 41.0 4e-64 MHKAGFVNIVGNPNVGKSTLMNQLVGERISIATFKSQTTRHRIMGIVNTDDMQIVFSDTP GVLQPNYKMQEYMLAFSESALADADILLYVTDVVETPEKNIDFLEKVRKMTIPVILLINK IDQSNQKTLDQLVEKWHGILPNAEILPISASNKFGIDVLLNRIQELLPDSPPYFGKDQLT DKPAKFFVSEIFREKILLFYDKEIPYSVEVKVDSFKETEQQIHIHAVIYVERDSQKGIII GHQGMALKKVSTEARKALEKFFGKKIYLETFVKVDKNWRNSTRELNSFGYNPE >gi|281305230|gb|ADEF01000042.1| GENE 7 6403 - 7716 987 437 aa, chain + ## HITS:1 COG:SP1709 KEGG:ns NR:ns ## COG: SP1709 COG1160 # Protein_GI_number: 15901543 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Streptococcus pneumoniae TIGR4 # 5 437 6 435 436 371 46.0 1e-102 MANLVAIVGRPNVGKSTLFNRLTQSRKAIVSDTAGTTRDRQYGKCSWNGREFSVVDTGGW VVNSDDIFEDAIRKQVVVATEEADLVLFVVDVKNGLTDWDADVAQILRQTKLPVILVANK VDNSAEYYTAAEFYRLGLGEPQCISAATGGGTGDLLDLLLEKLPSDKREELEEDIPRFAV VGRPNVGKSSIINAFIGEDRNIVTEIAGTTRDSIYTRYDKFGFDFYLVDTAGIRRKNKVT EDLEFYSVMRSIHSIENSDVCILMLDATRGIESQDMNIFQLIQRNNKSLVVVVNKWDLVE DKDHKVIKTFENAIRERMAPFVDFPIIFASALTKQRIFKVLETAKNVYKSRKLRIGTSKL NEVMLPIIEATPPPSIKGKYIKIKYCTQLPNTQIPSFVFYANLPQYIKENYRRFLENKIR ENWTLTGSPINVFIRKK >gi|281305230|gb|ADEF01000042.1| GENE 8 7734 - 8219 195 161 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880855|ref|ZP_06289548.1| ## NR: gi|282880855|ref|ZP_06289548.1| hypothetical protein HMPREF9019_0111 [Prevotella timonensis CRIS 5C-B1] # 1 161 1 161 161 298 100.0 6e-80 MKTVKTFSFYWCQKIVVLCVQVMLLLGASTVFAQHKTVVKKVFKVPQRACVLEPVVSDAR IEKMKKEARNEDDFYVEADDVNYYLYQAGEFMKRHGQKAILVPATYTDILFPNGEIIQAD TIAFGGMILYKLGKNPQVVSSVDIAEAYQSYFAPVKRKRRR >gi|281305230|gb|ADEF01000042.1| GENE 9 8308 - 8703 283 131 aa, chain + ## HITS:1 COG:no KEGG:PRU_2941 NR:ns ## KEGG: PRU_2941 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 3 131 1 128 128 115 47.0 4e-25 MMMRKLLYIALLMAVAACTSKGVDQGEVAARAAKQYYDYLLQGDYASFVDGHFRHDSIPD TYREQLIANAKMYMNQQTVEHRGIKDVHIVQVKADTEKHAANVFLVFAYGDSTNEEIVVP MVENKGVWYLR >gi|281305230|gb|ADEF01000042.1| GENE 10 9243 - 9494 210 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRGIQFFLANVLQMYKNILYLCYQYVSDIKLCARHDNSVQGVKSGKFKLEIMNTESQSEF TASIGMDSSFVFYLISGLPEPYS >gi|281305230|gb|ADEF01000042.1| GENE 11 9586 - 9807 321 73 aa, chain + ## HITS:1 COG:no KEGG:PG0221 NR:ns ## KEGG: PG0221 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 73 1 73 73 63 50.0 3e-09 MALFRITVTRRKNTAGMLIEPGMSVQIASFVNNPVTNIQECKKVNQLFINNFGVDLDKIG ALNCSCLRVEKIG >gi|281305230|gb|ADEF01000042.1| GENE 12 10012 - 12345 1133 777 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880859|ref|ZP_06289552.1| ## NR: gi|282880859|ref|ZP_06289552.1| hypothetical protein HMPREF9019_0115 [Prevotella timonensis CRIS 5C-B1] # 1 777 1 777 777 1409 100.0 0 MEKTIVIENAGEKKFAVAKQLMEVLDLQWSEVLKLLDNCPIELSLASSVNINNLVNNLKK RGAEVYNPNNMEHVQKQEEAPLSPLEIFRRGVTKYRLTSYDNNSDCFILNIPDTKKRDFR QNFNIPLDETILMGRDTSFWNNANQGVVITDKNIYILLDNDSDDDIEILSWNRIESVKYQ DAAIYFNIDGEPYGYGIGCFLKSSGNENNDLKSAQRLATIFESIAKSIETIQLENIATEV GQLIEEKKFEEAKNICYQHINNTSDSVEQSLGYFWLGRIFSDESWDIQKEIDLQDNVPDN LWQKRKTCENEAQEAFDQALKLCDDKDEDKFLIYLNKGYVGDNLLLNRNYFIEAMQSNDY DIQHNARNGYDELTEVIVKKANNENEEQDNFCNTVEYRKRNLMFIVGNKKQIAGCYDKDE LIPCVFTMDTFPQDINFPVGHPQANTLYLGHPLIPTEYIPFENATEKLFLDKIREFCYLV QCLGAEEIIIQRTKGSDISTDISNTINANLGGGRKLLEASLEGNASSKTAERTKKTDGVE LIQQFHPSKYPFCPNDLIWLDSDSTWKSMIKQRLNGDIRTYSEKITSAEATNISSSQIQG IKGSMSNLLIKAKASVDRSIESTFSKTEEKEIIIKIKFKPIDEFVKEESIDNNSQESKNQ STKINDTLSEKELAFLDEVKFCLEDDGKIDDNEMVLLKRKRIKLGVSEERAQEIIAMCTT TFSEEEQEYIDVLTDIIIDGVIPESTRRLLAREMKSLNITEERAKEIEEFVLKNHGK >gi|281305230|gb|ADEF01000042.1| GENE 13 12480 - 14672 1758 730 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880860|ref|ZP_06289553.1| ## NR: gi|282880860|ref|ZP_06289553.1| hypothetical protein HMPREF9019_0116 [Prevotella timonensis CRIS 5C-B1] # 1 730 1 730 730 1264 100.0 0 MDTKKLYQKIKKIAEEQQRDSSVMSRADLAYELKQFGIQGDSLEINKLVYDAYVYYKESP VIRDAFVEMSSNVPIVSTYKLHSALGQANYDGVKTLMQQTLDKTAQSLTTLDNHIFENMT EQAVKVAAGMMNVVTGNSAVVKIQKEANVLFVRYTGMVNGYEVAKNEIETLTKNFVYLRD EIVSIYRNYAAQLIDIFGDSIKSVEPELFDFDAIEWMNVQGMLKNTQLEYSRLSESCTNL MASISENFNVALQKAAGQYRSVNNKGVGLALVGLNLLSHYTNSMANAANLKIDLQKFKNN IHKDGTVIKTDLMRLMSIYKVMNDVNIPRANAFYRFCEKVLNQEFKNLIDSLYDTPELKK LKEERNVLFDNYKQFENLVVDHQMNIDNYKTIIEDNKQLVKNLQDDYQCAMSSKPSKPSA FINFLTFGSKGKSFSRDMFEWQQQFKPTIEKYQNLQVDIKLYQEDLESHQKALKEIENDY LSKKDELQALNTQIRQAISASKEVKIKVSESLTDIVGLLRLAREIANTRLSDLQMKAIKA PDLHEITVPESVKNGISALTSVLKVGLETAVDNVSTVGMETLEQMQNSKDERNQMAIDTS NAQDIVKSQSNEVSIDKLDIAQVNAEAIQTVAGIANLFESYSNLLAMKQQSAIALEQYDA NMKSLQDQFKQITNGVDDKATLLRNSLKNINLAKDAKQLKNALLSLSDGDINLSEDDIDN FLNGNKNIVL >gi|281305230|gb|ADEF01000042.1| GENE 14 14672 - 15244 504 190 aa, chain + ## HITS:1 COG:no KEGG:PRU_1183 NR:ns ## KEGG: PRU_1183 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 40 160 8 128 161 123 46.0 4e-27 MANNRRQAAKDELGFVDKEEEIVVSEALDKEALRRQEKEERRQELLESDSYQVISTIAKW ADKYFLDPIIGFFPVVGDTISAAFGLPFIYFALTKVRSIPLALAVTYNYLVDFLLGCIPF FIGDVIDFFHRAHIKNMQLITHFVDDDKEAIKEVNAKAIRVAILIVLLCYLIYKVFGWIN MFADWVASFF >gi|281305230|gb|ADEF01000042.1| GENE 15 15312 - 15836 368 174 aa, chain + ## HITS:1 COG:no KEGG:BT9727_0833 NR:ns ## KEGG: BT9727_0833 # Name: not_defined # Def: hypothetical protein # Organism: B.thuringiensis # Pathway: not_defined # 34 159 84 193 203 82 41.0 5e-15 MKKYISLTKEQQAQIAHQTGWSDNVISHIRSMEEAAIYMKAGLVERNVGGRVALIRTDIN WSDYSIRRNTWLKEYLADWDKWAEYNNADLIGEGFPPRDANGDPYALHHIGQEQDSPFAE LTWNEHMGDGNNPILHTSRESKIYRDQFNKEKSLYWQARFKAFTQDELNKIYQK >gi|281305230|gb|ADEF01000042.1| GENE 16 15915 - 16859 784 314 aa, chain + ## HITS:1 COG:no KEGG:BT_2509 NR:ns ## KEGG: BT_2509 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 3 297 4 299 300 164 32.0 5e-39 MDGRLRAYLWLIDILRQKRMTLAEIKQRWSASSYNVDHGELTDRTFHRYRENIATDLGVY IECNKKAGNVYYIKESIYDNANVVDWLLSSFRISEMAQRVRQHDKIMLENPPQDTLYMNQ LLDCIDENRYVRVSYKNAYGVESTFILAPLFVRLFRQRWYLIGRDKKNGDVRILAVNRLL EFEKLDVKVRKEKPLMPDEFFADCFGIMKDPRRKAEHIRLRAFWPQYVFLEETPLHHSQR MVKDSGDGEYREYELYVQPTFDFKQELLKNSRALIVLEPQSLRNEMIAILKDMLKGYETG EDYSGEGKGYDADA >gi|281305230|gb|ADEF01000042.1| GENE 17 16960 - 17778 253 272 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 18 241 1 229 245 102 25 7e-21 MNDQIETEVPQQESESLVLRTEGLVKRYGKRTVADKVSYDVHQGEIVGLLGPNGAGKTTS FYMTTGLVIPNEGHVFLNEQEITDYPVYKRAQAGIGYLPQEASVFRKMSVEDNILSVLEM TKLSKKEQMERLESLITEFRLNKVRKNKGDQLSGGERRRTEIARCLAINPKFIMLDEPFA GVDPIAVEDIQHIVWRLKYHNIGILITDHNVQETLTITDRAYLLFEGKILFHGTPEELAN NKIVREKYLGSNFILRKKDFQLIDEERRAREE >gi|281305230|gb|ADEF01000042.1| GENE 18 18268 - 19203 613 311 aa, chain + ## HITS:1 COG:no KEGG:BT_0234 NR:ns ## KEGG: BT_0234 # Name: not_defined # Def: putative transposase # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 309 1 311 316 428 69.0 1e-118 MKATRKCSFCGKSFVTRSGMQRYCSEACQAEAKRARVMQKNNLFKVAQPLMEIQHQEYLT FSKAAILMGCSRQYIYKLVAIGKLKASRISNRMAFIRRADIEQMLEGNPYHRILPGNTST PRKSSSSSLPAKREKREKESEEVLDFYSGEEVMSLFKVKQSWLYTSAKRNHIPICRIAGK NYYSKKHIDEFFGVAVDISEITDWLLTEEVEELFGMKPTALRAYTYRHKIPTKREYGRTY YSKSHLNELRRTDLVNDERYYTVEQVQQIYGLSSANICHIVKVKHIEKIKVGVKNLLLRS DVERVMAERNK >gi|281305230|gb|ADEF01000042.1| GENE 19 19345 - 20463 772 372 aa, chain + ## HITS:1 COG:PA3738 KEGG:ns NR:ns ## COG: PA3738 COG4974 # Protein_GI_number: 15598933 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Pseudomonas aeruginosa # 95 358 14 287 298 69 25.0 9e-12 MSKCKTVTLRKRKIKNGTQYSLCLDYYPGYRDNVTMRVITREALGIYIFAKPANQQERDF NARMMKKAVILRNQRYEAIFNENNGFFDKTKMKGDFLAYFKGLADRKNIKWQHVYKHFQR FVNGKCTFEEVDVDLCRKFMEYLLDAPQSIHTNQKLHINSAAGYWSTFRAVLHTAYRDRK IKENPNGFLDRIECIPTIREHLSQEELIRLAETPCEEEVLKKAFLFACLTGLRKSDIRQL TWQQIQPYTNGRMFVTTRMQKTKEIVHNPISDEAYGLLGERGEGLIFEDFKDKMLQGPLQ RWLTAAGITKKITFHCTRHSFGSLHVEMGTDMAVIQAYLGHKNITTTQIYSKIAAQQMCQ VVDKITLKRKEA >gi|281305230|gb|ADEF01000042.1| GENE 20 20711 - 21568 503 285 aa, chain + ## HITS:1 COG:no KEGG:BF4230 NR:ns ## KEGG: BF4230 # Name: not_defined # Def: putative protein involved in transposition # Organism: B.fragilis # Pathway: not_defined # 116 230 2 116 142 151 61.0 2e-35 MESSIKDKYIILGFVGFAIVLISSIATLVIADSFNQDNFVRWIVFVCCNLLGWLLYLSFQ TLIFDTYEIYKIKFGKKETIAEAIEVQEELSQNTLEEATSVPGPTSVPEPVPESSPTKEE TLIQTQPIELTIAPDLHEKNRANYASREQREKEERIRMVMEYCHYYLPRIADQETVNHIC TEVDKWMNLNTYTPKPIQRPFTKDINNIPLRHFVWNISERFLYKRYYNGDNRAKFIKALF PKSFADTDLSTIKNFKVEPLKTEIPIDEPENGKLDFHYPEDYVRN >gi|281305230|gb|ADEF01000042.1| GENE 21 21768 - 22142 282 124 aa, chain + ## HITS:1 COG:no KEGG:BF4232 NR:ns ## KEGG: BF4232 # Name: not_defined # Def: excisionase # Organism: B.fragilis # Pathway: not_defined # 1 101 1 101 136 155 80.0 3e-37 MEKSILTFNDLPEVVAQLRDEVMSLKSLLAEQRSVNNAKTVDTHVPMSVDEAAEYLGIPK GTLYMKLSEGTIPVTKPGKRYCLYRDELDKWLETARKNPIPLSDEELNKSLSSSHRRKPN PRNW >gi|281305230|gb|ADEF01000042.1| GENE 22 22148 - 23245 615 365 aa, chain + ## HITS:1 COG:no KEGG:BF4233 NR:ns ## KEGG: BF4233 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 198 1 198 240 363 85.0 6e-99 MEEDKNYINLIRGDLTKASQAHNGMPDSVGMMNIKTANQTILEASLLPTPRALWDSFWYE GELSCLFADSNVGKSILAVQIADRIARTDNVLYLDFELSEKQFQLRYTNEHGELYTFPDK LYRVSIDCNQLLDANFEEAIIGGIEQMAVQTDCKIFIIDNLTYLCCAMEKGDAAGRLMIQ LNNLKKRYALSILVLAHTPKRSLDCPITSNDLAGSKRLYNFFDSVFTIGKSAQDGGLRYV KQLKVRYGTFSHDADNVIVYEIDKVDAFLQFVFRGYSTEKEHLKKLGDNESSQRDCQILQ LSQSGKSVREIASQVNCGKSTVNRIIQRSKESKNAGVPSVPLSQPLECGTMGQDGTADNQ PSKTD >gi|281305230|gb|ADEF01000042.1| GENE 23 23249 - 24364 655 371 aa, chain + ## HITS:1 COG:no KEGG:BF4270 NR:ns ## KEGG: BF4270 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 4 358 6 341 342 259 43.0 1e-67 MGNYSLQKYKGTATRHTCPKCGDRHSFVYYVDENNVPLHPSVGRCNHESGCGYHYTPKEY FQEHPEHRTTNDFSFDRQRAEQKKVKQQSKPTAIGYIPPHYVEKSQSERSNFFRFLFTLL TSYYGDKAKEVLKRLLEEYRLGATRDGSVIFWQIDRTGKVRTGKVMQYNPEDGHRIKGGQ TSAVNWIHSILKKQRVLAEDWQLSQCLFGEHLLKTYPDKVVVLVESEKSAVIGSAIFPDY VWLATGGKSQMREEKLRVLSGRTVLLFPDADAYAEWKQRAESMYFCKVVVSDIIERNATP KQKEAHIDIADWIIFQIREGKVMSTANHLVEAERILQRMIEKNPVLQKLIDDLDLVLVGA SPIGNDDEKPP >gi|281305230|gb|ADEF01000042.1| GENE 24 24647 - 26050 740 467 aa, chain + ## HITS:1 COG:no KEGG:BVU_1439 NR:ns ## KEGG: BVU_1439 # Name: not_defined # Def: mobilization protein # Organism: B.vulgatus # Pathway: not_defined # 1 467 1 467 467 675 75.0 0 MATKSSIHIKPCNIASSEAHNRRTAEYMRHIGESRIYVVPELSTDNEQWINPDFGSPDLR MHYDNIRQMVKEKTGRAMQEKERERKGKNGKIVKIAGCSPIREGVLLVRSDTTLADVRKF GEECQRRWGITPLQIFLHKDEGHWLNGQPEAEDRESFKVGDRWFKPNYHAHIVFDWMNHE TGKSRKLNDDDMMQMQTLASDILLMERGQSKAVTGKEHLERNDFIIEKQKAELQRMDAAK RHKEEQINLAEQELKQVKSEIRTDKLKKTATTAATAITSGVASLFGSGKLKELERANEKL QDEVSKRNTNIEKLQSQVQQMQKQHDTQIHNLREMHRQELDMKEKELSRLARIIDKAFRW FPMFREMLRMEKFCAMLGFSKEMTESLIVKKEALKCSGKIYSEQHRRNFDIKDDILRVEN DPDDESRLNLTINRKPIADWFREQWHRLRYGARVPQQEERKSRGFKL >gi|281305230|gb|ADEF01000042.1| GENE 25 26143 - 27108 529 321 aa, chain - ## HITS:1 COG:no KEGG:BT_4507 NR:ns ## KEGG: BT_4507 # Name: not_defined # Def: beta-lactamase precursor # Organism: B.thetaiotaomicron # Pathway: Biosynthesis of secondary metabolites [PATH:bth01110]; Two-component system [PATH:bth02020] # 44 311 22 287 293 207 41.0 5e-52 MEKNRKKQIVVLSIALVCIFILVFSLFHKSATKDSANPPLTNVLTDSISQIVSACPGEIG VAVIVNNRDTVKVNNKSVYPMMSVFKVHQALALCNDFDNKGISLDTLVNINRDKLDPKTW SPMLKDYSGPVISLTVRDLLRYTLTQSDNNASNLMFKDMVNVAQTDSFIATLIPRSSFQI AYTEEEMSADHNKAYSNYTSPLGAAMLMNRLFTEGLIDDEKQSFIKNTLKECKTGVDRIA APLLDKEGVVIAHKTGSGDVNENGVLAAHNDVAYICLPNNISYTLAVFVKDFKGNESQAS QYVAHISAVVYSLLMQTSVKS >gi|281305230|gb|ADEF01000042.1| GENE 26 27363 - 27584 142 73 aa, chain + ## HITS:1 COG:no KEGG:BVU_2907 NR:ns ## KEGG: BVU_2907 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 6 73 1 68 68 107 80.0 1e-22 MMPMRMPNTWITDFSFREQTLYPQLCYVVYWLNSISMGNTFVADFKQLLSKYPSVRTRLL GFPHNWEQEPLWR >gi|281305230|gb|ADEF01000042.1| GENE 27 27995 - 28516 263 173 aa, chain - ## HITS:1 COG:L118481 KEGG:ns NR:ns ## COG: L118481 COG0350 # Protein_GI_number: 15672513 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Lactococcus lactis # 8 168 7 169 169 142 47.0 2e-34 MEQYTDTYTSPLGIITMSSNGKQLTGLWFEGQKYFGHALSDQPSHPSLPIFDETRTWLNV YFQGKYPTFMPPILLNDTPFRQTVWQLLLTIPYGETTTYKHIALEWARQHSVKSMSSQAV GGAVERNPISIIIPCHRVIGTNGSLTGYAGGLDRKRWLLQLEQANTDRFLLDQ >gi|281305230|gb|ADEF01000042.1| GENE 28 28743 - 28925 121 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MESTPNFVISFIYCLKNMRIRSGRLNVRPINNRYFPNVIRYVMINFITKILLAFNLFFNR >gi|281305230|gb|ADEF01000042.1| GENE 29 28837 - 29532 643 231 aa, chain + ## HITS:1 COG:aq_355 KEGG:ns NR:ns ## COG: aq_355 COG0767 # Protein_GI_number: 15605864 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: ABC-type transport system involved in resistance to organic solvents, permease component # Organism: Aquifex aeolicus # 5 230 23 244 245 117 34.0 2e-26 MGRTFSRPERMRMFFKQYIKEMTKLGVDSIPLVLLISFFIGAVICIQMKINVQSPWMPRW TTGYVTREILLLEFSSAFMCLILAGKIGSNIASELGTMRVTQQIDALDIMGVNPACYLIL PKIMGLITIMPFLVIFSSVAGMIGAYATAYSGVLSPADLTTGLQYSFKVWFIWMSIIKSL VFAFIIASVSSYYGFSVEGGAVAVGEASTNAVVSSSVLVLFADVFLTPLLS >gi|281305230|gb|ADEF01000042.1| GENE 30 29563 - 30321 333 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 228 1 229 245 132 33 4e-30 MIEVKNLYKSFGEKEVLQNINTTFENGKINLIIGQSGSGKTVLVKNIVGLLAPDRGQVLY DGRDFVSMSRREQVVMRREMGMVFQNSALFDSLSVLENVMFPLDMFSTKNYRERVKRAQE CLERVNLLDAQAKSPGELSGGMQKRVAIARAIVLNPKYLFCDEPNSGLDPKTSLVIDELL SSITTEFNITTIINTHDMNSVMEIGDHITFIYKGKVEWMGNKADVVNSDNKRLNDLVFAS DLFKKVKQAENE >gi|281305230|gb|ADEF01000042.1| GENE 31 30357 - 30590 173 77 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880878|ref|ZP_06289571.1| ## NR: gi|282880878|ref|ZP_06289571.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 77 2 78 78 137 100.0 3e-31 MIHPRLQNFLERLVIFVLFNLRPMEADKTTHQFKPNSRFEDAVALYNFDIELRDLMFKAV QRLEIALRTTYSKFPFG >gi|281305230|gb|ADEF01000042.1| GENE 32 31137 - 32492 1884 451 aa, chain + ## HITS:1 COG:PA1800 KEGG:ns NR:ns ## COG: PA1800 COG0544 # Protein_GI_number: 15596997 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Pseudomonas aeruginosa # 1 436 1 431 436 69 21.0 1e-11 MNISFENPDKINGLLTVTVEEADYKEDVEKTLKDYRKKANVPGFRPGQVPMGMIKRQFEP SVKMDTINKLVGQKLYEYIRENNIPMLGEPLASGKQETVDLEKEAPYTFTFDIAVAPDFK IELNGKNKIDYYNILVDDKLIDQQVEMFASRMGTYEKVETFEGNDMLKGDLRELDENGNT KEGGITVEAAVLMPSYIKEEGEKKKFDGAKLGDIITFNPRKAYASDVELASFLKIDKEQV KEHEGNFSYQITEISRYQNHAVNQELFDNVYGKDAVKDEKQFREKIAEGLKAQLEGESDY KFLLDTRAYAEKKVGKLEYPDELLKRIMRKNNPDKDEAFVEKNYEESIKQLTWHLIKEQL VKAHDIKVEDQDIKEVARAAARAQFAQYGMSNVLDEYIENYVNDLLKKQESVDAFVDRAI DSKLTQALKKSVKLNEKEISLDDFNKLFEEK >gi|281305230|gb|ADEF01000042.1| GENE 33 32626 - 33291 777 221 aa, chain + ## HITS:1 COG:alr3683 KEGG:ns NR:ns ## COG: alr3683 COG0740 # Protein_GI_number: 17231175 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Nostoc sp. PCC 7120 # 32 220 31 219 232 220 56.0 2e-57 MNDFRKYATQHLGMNGMTLDDVIKSQARYLNPYILEERQLNVTQMDVFSRLMMDRIIFLG TEIDDYTANTLQAQLLYLDSVDGGKDISIYINSPGGSVTAGLGIYDTMQFITSDVATICT GMAASMAAVLLVAGQEGKRSALTHSRVMIHQPLGGVQGQASDIEIEAKEIIKFKKELFTI IANHSHTPYEKVYRDSDRNYWMDAEQAKEYGMIDTVLVRKK >gi|281305230|gb|ADEF01000042.1| GENE 34 33302 - 34546 260 414 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 155 404 248 452 466 104 31 1e-21 MATTKKKCSFCGRSEDQVDLLITGQSGFICDACVQAAYSIVESAGLSGEAKEKHATDEPF QLKKVPKPKEIKKYLDDYIIGQDDAKRYLSVSVYNHYKRLQQPKNEDGVEIEKSNIIMVG STGTGKTLLAKTIARLLDVPFTIVDATVFTEAGYVGEDVESILSRLLQVANYDVAAAERG IVFIDEIDKIARKSDNPSITRDVSGEGVQQGLLKLLEGTMVNVPPKGGRKHPDQDYIHVD TKNILFICGGAFDGIERKIAQRLNTHVVGYNSVQHVRNIDKGDLMKYILPQDLKSFGLIP EIIGRLPVLTYLNPLDKEALRKILVEPKNSIVKQYIKLFEMDGIQLTFANEALDFIVDKA VEYKLGARGLRSIVESMMMDAMFEIPSKRTKSFEVTLDYAQKQLNKANLNKLGE >gi|281305230|gb|ADEF01000042.1| GENE 35 34674 - 36851 2000 725 aa, chain + ## HITS:1 COG:alr0205 KEGG:ns NR:ns ## COG: alr0205 COG0514 # Protein_GI_number: 17227701 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Nostoc sp. PCC 7120 # 1 719 1 712 718 489 38.0 1e-137 MAKKVNLTEKLKLYFGFDSFKGEQEAIINHLLAGNSAFVLMPTGGGKSLCYQLPSLLMEG TAIVVSPLIALMKNQVDVINGISEEEGVAHFLNSSLNKAAIQQVMDDVRAGRTKLLYVAP ESLNKEENIEFFKTVKISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPVIALTAT ATDKVRTDIKRSLGIADAREFKSSFNRPNLYYEIRQKSSDIDKQIIMFIRQHEGKSGIIY CLSRKKVEELSEVLKANNIKAAPYHAGLDSVTRSQTQDDFLMERIDVIVATIAFGMGIDK PDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAQKDLKKLEKFMEGKPVAEQDI GRQLLQETAAYAESSVCRRKMLLHYFGEEYLQENCHSCDNCLHPKERREAKQALLIALKA ILVLKENFRQDYLVDFITGNPTEDIVSHKHDELEEFGAGEDEDSKVWNPVIRQGIIAGYI EKEVENYGVLKVTAAGKKFMKKPVSFMIALDNEFSAYDEDELQEGGSGVLDPRLFKMLKS LRKEMSKKMNIPQYVIFQDVSLEQMATVYPVTLEELQQIQGVGAGKAKRYGKKFVELIKS HCDENEIERPEEMRVRTVAKKSMLKVKIIQSIDRQVALDDIANALGLDFDELLDELEAIV YSGTKLNIDYFLEDVMDEDHVDDLYDYFMESETDGLKVAMEELGDQYSEDELRLVRIKFI SELAN >gi|281305230|gb|ADEF01000042.1| GENE 36 37025 - 38512 1741 495 aa, chain + ## HITS:1 COG:SPy2206_3 KEGG:ns NR:ns ## COG: SPy2206_3 COG0516 # Protein_GI_number: 15675939 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Streptococcus pyogenes M1 GAS # 207 493 1 286 286 357 63.0 2e-98 MSLFVADKIVMDGLTFDDVLLIPAYSEVLPKEVELKTKFSRHIDLNVPYVTAAMDTVTES AMAIAIAREGGIGVIHKNMSIDEQAHQVAIVKRAENGMIYDPVTIRRGSTVQDALNMMRD YHIGGIPVVDDENHLVGIVTNRDLRFERRLDKTIDEVMTSENLVTTHVKTNLSDAAQILQ EHKIEKLPVVDNQNKLVGLITYKDITKAKDKPMACKDEKGRLRVAAGVGVTIDTMERLNA LVQAGADAVVIDTAHGHSKGVVEKLREAKSSFPHVDIVVGNVATGEAAKMLVDNGADAVK VGIGPGSICTTRVVAGVGVPQLSAVYDVYAALKDTGVPLIADGGLRYSGDIVKALAAGGS SVMVGSLVAGTEESPGETIIFNGRKFKSYRGMGSLEAMEQKNGSRDRYFQSDTTDAKKLV PEGIAGRVPYKGTVQEIVYQLMGGLRSGMGYCGAKTIQDLHNAKFVRITNAGVLESHPHD ITITSEAPNYSPHEL >gi|281305230|gb|ADEF01000042.1| GENE 37 38564 - 39997 1040 477 aa, chain + ## HITS:1 COG:RSc1715 KEGG:ns NR:ns ## COG: RSc1715 COG0760 # Protein_GI_number: 17546434 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Ralstonia solanacearum # 49 274 206 415 648 79 28.0 1e-14 MKMKNILLAVMLACCSLVLAQQDDPILMTINGKNIHRSEFEYSYNKNNAEGVIDKKSVDE YVDLFINYQLKVIAAEEARLDTLSSFKKEFAMYRDAQIKPTMITDADVEQKAHEIYQQTA NRVNASGGLVKVSHILIALKQTAGEVDRRIAEQRADSVYRALCKGANFGELAKRVSDDRA SASRGGELPWLERGQTLEEFDKAIFSMKKGELSKPVQTPAGYHIIFLKDKRSFFPYDSLK TEILQFIEQRGIRDQLISKKIQTAIEHAGSGVTEDDILAQKRKELVAKNPQLKYLIKEYH DGLLLFEVMTREIFSKAQNNAQALNEYFRQNRKKYKWEQPRFKGIAYYTKNKKDIKAVRK AVRRVPFEEWTKVIQQTFNQDSTIRVSVDKNIFKKGDHPLVDCHVFKKIGQVKPLTDFPY AATYGKKLKKPQCYQDVEAQVVADYQEELEKQWVQRLRRKYPISVRRDILATVNQHP >gi|281305230|gb|ADEF01000042.1| GENE 38 40033 - 41502 1121 489 aa, chain + ## HITS:1 COG:RSc1715 KEGG:ns NR:ns ## COG: RSc1715 COG0760 # Protein_GI_number: 17546434 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Ralstonia solanacearum # 167 350 242 420 648 79 32.0 1e-14 MKKEIKIVCGLIALLIVVSMSARPRNRQSAKPQTDSIKANTSQMPENSVIDEVIWVVGDE PIMKSDVEMTRLQSEAEGVKFKGNPDYSIPEHIAVQKLFLHQAELDSVEIPEAQVTASIE RQINRWIEMAGGSAERLEAYRGQTISQMRSQLRDDFRNNLLVQNMQEKLVQDVKVTPSDV RAYFKDLPADSIPFVPTEVEVEIITRKPKILPEEINRVKNELRNFTNRVTSGETSFATLA RLYSEDPGSARQGGEMDYMGRGMLDPDFANVAFNLTDPKKISKIVETEFGYHIIQLIDKR GDKIKVRHILLKPKVSDEEVQKVLVRLDSVATELRADTFRLSSDQHAPSLSFGEAATYIS DDKDTRNNRGLMSFVDMQTGNLSSRFQMKDLPTEVARQIEGMKVGDVSPAFRMIDKRGKT VCAIVRLRNRVEGHRATITEDYQVMKNIVLAKERQKFIHNWVVNKIKQTYVRMKDRYKNG EYEYEGWVK >gi|281305230|gb|ADEF01000042.1| GENE 39 41556 - 43178 716 540 aa, chain + ## HITS:1 COG:no KEGG:PRU_0035 NR:ns ## KEGG: PRU_0035 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 15 513 18 512 517 507 51.0 1e-142 MTLCLFGLCMVQSLPAQRHPKKKAKKSNRVELLHADELRYDMYGPNPEAQILKGKVSFRH QGARLTCDSAYFYEADNSMKAFGHVRFVQGDTLSLTAERADYDGQEQMMRARKNVVLKHR RQTLLTDSLDYDRLYQTAYFYEGGTLIDGKDRLVADWGEYNTETRQAVFYYHVKLRSENR LVTTDTLHYDTQKSIAHVLGPSKITTKSSVTETKDAIFHTKTDKAQLYGRSTIVDGDKTI TGDTLYYDSKSGQSNGYGDVIFVDRKNKNSLRGNYLEYNEKTGYGYATNKALVTDFSRKD TLYLHGDTLKLFSFHLDTDSMYRQVHAYHKVSVYRNDLQAVCDSLVFSTRDSCLNMYQDP IVWNNNRQLLGEYIQLFMNDSTVREAHVFGQALSVEKADAEEHYNQLFAKEMHAYFTDGQ IRRALAISNVMSIFYPMDDKDSSLVMMNYLETDTMKMYFAGQRQLERIWTPKAVGTTYPM SQIPPAKLKLPVFAWHDDIRPKTKDDVFVWKGKSQGTELKYRPRVEAPLQKLRQVKEEKP >gi|281305230|gb|ADEF01000042.1| GENE 40 43175 - 43471 133 98 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880887|ref|ZP_06289580.1| ## NR: gi|282880887|ref|ZP_06289580.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 3 98 1 96 96 155 100.0 5e-37 MSMFQSPKPRGFQHHYLYVDERKERLKEIQQRAMMADKKSEFNSSYSSPSSIKGLFRKSS RQKQSSHFIFLLVGLFCLVILIALLLFVTTVSITPVHF >gi|281305230|gb|ADEF01000042.1| GENE 41 43486 - 45300 1336 604 aa, chain + ## HITS:1 COG:MA0522 KEGG:ns NR:ns ## COG: MA0522 COG0323 # Protein_GI_number: 20089411 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Methanosarcina acetivorans str.C2A # 5 602 8 652 656 310 32.0 7e-84 MKDIIQLLPDVVANQIAAGEVIQRPASVIKELVENAVDAGASAIDVLVVEAGRTSIQVID NGKGMSGTDARLAFERHATSKIRQAEDLFALQTMGFRGEALASIAAVAQIELKTRREDDD LGTSLTIAGSKVKGQEPCACPTGSNFLVQNLFYNVPARRRFLKSNTTELKHIVTAFQRIA LVYPQIAFTLHSNGTELLNLRPCVLRQRIVDIFGKRINQDLLPVSVDTTMCKISGFVGKP ESSKKKGVQQYFFVNGRYMRHPYFHKAVLNAFERLIPQGDQVPYFIYFELNPQEIDVNIH PTKTEIKFENEQAIFQIVFAAVREAVGLFKEVPSIEFNNEGQPDIPVYSGHRDATAAPHV QTNPNYNPFQQTSIPSPHASSDWEKLYEGLEQTPENIALFNSDGIEQNVQNSLIEEKSPV HYQYKGQYLMTAVKSGLMIIDQHRAHVRILYERYLQQMKEGKEYAQKVLFPELIQLSPAE QIIFPKMMPDLAAMGFEFTSMGKSDYAIQSVPAGIEGLDMVQLVHDMLSSALEKDSNAVH EIHQALALSLAKHAAIPTGQVLNNEEMENLINSLFGCQNVNYTPDGKSILHILKQEKIEQ LLNS >gi|281305230|gb|ADEF01000042.1| GENE 42 45469 - 46623 996 384 aa, chain + ## HITS:1 COG:no KEGG:BVU_0414 NR:ns ## KEGG: BVU_0414 # Name: not_defined # Def: major outer membrane protein OmpA # Organism: B.vulgatus # Pathway: not_defined # 1 381 1 397 399 227 37.0 6e-58 MRKLLIVLAFAGVSMCSMAQNADPVQKYSVATNSFWSNWFIQVGGNWNAWYSSEEHGHSL DRSPLKDFRAKPGVALAIGKWFTPGLGLRTKVQGVWGKTVYADKAGKPVGADNKYWVLNE HALFNLSNMLCGYNPNRVWNFIPFAGAGFGRTMTHNLYAMDLSAGILNTFRLGQHVSLHL EAGWNRLESDIDGGDETTIATRGWDSHDNNLYAELGLTFNLGKASWDKTPDVDAIKALSQ SQIDALNAQLNDANAENARLKDMLANQKPVETPAVKKFVTTPVSVFFKLDKTNIASQKDL VNVQAVAKYAKENNCKLEVNGYADSATGKPAHNQWLSEERAKTVANELVKMGVSRDNITT KGNGGVDDLSPISFNRRATVKVAE >gi|281305230|gb|ADEF01000042.1| GENE 43 47032 - 48021 1014 329 aa, chain - ## HITS:1 COG:PM1621 KEGG:ns NR:ns ## COG: PM1621 COG0180 # Protein_GI_number: 15603486 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Pasteurella multocida # 2 327 3 330 333 256 41.0 6e-68 MKEKVVSGIRPTGFLHLGNYFGAVKSFIEMQNSYDCMFFIADWHSLTTRPKPEDIQKSAR VILAEYLACGIDPDKAPIYIQSDVKETLELYLYLNMNTYIGELGRVTTFKEKARKQPDNV NAGLFTYPTLMAADILQHRAKKVPVGKDQEQNMEMARKCAARFNRIYGVEFFPEPENFYF NAQALKVPGLDGSGKMGKSEGNCIYLHDDDKTITKKVMKAVTDNGPQSANSEKPEVIENL FTFLKIASTQDTYDYFNEKWNDCSIRYGDLKKQIATDLCAVVAPIREKIQEYMGNAELLD KIAREGADRARESASATLQEVRSIIGFRK >gi|281305230|gb|ADEF01000042.1| GENE 44 48507 - 51602 1849 1031 aa, chain + ## HITS:1 COG:no KEGG:BF0944 NR:ns ## KEGG: BF0944 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 39 1031 119 1105 1105 1147 59.0 0 MVEKRKRYKCSSTCNRLVAMLVCSAFTFTPYFAFSSKANDVTNDVKQLSEGIAGIVVNQH GEPIIGATIKDVSTGKVCAVTDVNGNFAISAIKGNATLQVSYTGYVTQKISVHKNQHHYN IVMTEDQQSLNEIVVVGYGVQRKANLTGSVASISSDKLANRAVASVSAALAGTMSGVTSI QRTGEPGYQTGTITIRGKNSINAAAPLVVVDGVPGAMNNIDTQDIESISVLKDAASAAIY GVQAANGVILITTKKGKRGERTHVDYSGMVSFSSPTTHLKFLGSADYAILYNEAVINEHP TTKPPYTKEDIQKFRDGSDPYGHPNTDWYHEVYKGYAPETQHNIAISGGSSTTTYMGSIG YIYQDGLVKGINYERYNGRINLDSKINNWCSIGMNVSAYKDTFIGGFESTNDLLHYTHRL PPIYPVYNKDGSYNFSGYENPVAQSGYAVGKKTNQSSQFFGTTYLELRPFKGLSLKGVYN LRHDNTDFRNFKNHYEYGQGTNKYNSGEREGNHRYYNFDWYTTQILANYINTFAKYHHIS ALIGYEQVEHKYRYTKAHRSGGGTNDLQESLNTLDTSGQSNLDGGYDTGRMSYFGRLQYA YQDKYLFEANLRADASSVFPKNNRWGYFPAVSAAWRMSEENFIKNSAPWISNLKLRMGWG KTGNEELGRDEVYPSIGTYSYGQAVLGNKLVTTAFESRYVNKKLKWATVTNYELGLDAGF LNNKVGFELSLYKKKTNDMLLKLPILDVLGVEAPAQNAGCVQNTGFDLTIFHQNKIGQDF HYAVNLNLSYVKNEIVNMSGTEGPTPEDNRLWYLEGYPIGSFYGYVANGFFNSEEEIKAG PLRTGQEKPGDIRYKDITNDHKITAADRQVIGKNFPSWTTGLNIALGYKNIDLTMLWQGA FDVDAYYTGEAAYAFYNSAKVLKRHLDRWTPTHHNATYPRITKDSQTNFTTSTFWLEDVS YVRLKNIMLSYTLPQQWLSSIGIDKVKIYFSGENLLTFGGVEGIDPESPEDTRGAFYMNV KKISLGLKLSF >gi|281305230|gb|ADEF01000042.1| GENE 45 51615 - 53285 1197 556 aa, chain + ## HITS:1 COG:no KEGG:BF0863 NR:ns ## KEGG: BF0863 # Name: not_defined # Def: putative outer membrane protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 554 1 545 545 584 56.0 1e-165 MKKKYLYTALIGIMPLCYSCVDLDKMPLEQQSDQSYWKTCDDATKAVNELYTCYPEWDRN GILDITNAAFYADDAVNGIKWHEGNVAKGIYDPQDFSWKDNYNAIRKANIIITNTKDNKN ISDNDKNIILAQAYFFRAYQYFILIRQFGDVPYTESALDLDDQKDIVRTQKTEVYKHILI DFDFAAAHLPLKWEGANEGRITKGGALAMKARVALSQNDWQTARDAAKAVMDLGIYELWD ANNTGKYKELFWTRTDQGCKETIIKREFVAYQDDWYLLGYQAFPQMGWGGIDPTQSLVDA FEDINGAPIAKSKIYNPAKPFENRDPRLEVTVFHDGETMYGQTLRVAPLKSCYPTGILTH GDATATGYNQQKWLDPDVDPKVGGWHMEMDYKILRYAEVLLTYAEAQNELNPLDKSALEA VNKVRRRVGMPELQTADSSKPSYCASQDDLRERIHNEWRVEFALEGGHRQWDIRRWGIAK KVLNVPVYGLTYKLVNSPNAKKGDDGKICILYSQDKDAVKIKVRDCHYKDYNILYPIPQR EIDLHSKLKQNPGYDK >gi|281305230|gb|ADEF01000042.1| GENE 46 54377 - 54634 177 85 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMLSIKMCNFAEDRLRLNKENKFSLCSACTIFAEDRLRLNKENKFSLYSAYAIFAEDRLR LNKENKFSLYSAYAIFAKDRVHLCK >gi|281305230|gb|ADEF01000042.1| GENE 47 54690 - 56039 1297 449 aa, chain + ## HITS:1 COG:YPO1636 KEGG:ns NR:ns ## COG: YPO1636 COG0015 # Protein_GI_number: 16121904 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Yersinia pestis # 2 448 1 446 456 454 50.0 1e-127 MMTLDALTAISPIDGRYRSKTVALADYFSEYALIRYRIRVEIEYFIALCELPLPQLQNFN HSLFPRLRDIYQKFDETSAQRVKDIEQVTNHDVKAVEYFLKEEFDKIGGLETYKEFIHFG LTSQDINNTSVPLSIKEALHEVLVPCIEELIEQLEAYAAQWKDVPMLAKTHGQPASPTRL GKELMVYVYRLREQLMLLETCKMSAKFGGATGNYNAHHVAYPAIDWKDFGNRFVQEKLGL QREQYTTQISNYDHMGAFFDALRRINTIVLDMDRDFWMYISMEYFKQKIKAGEVGSSAMP HKVNPIDFENSEGNLGMSNAILQFLAQKLPVSRLQRDLTDSTVLRNVGVPIGHTMIALQS TLKGLRKLILNEDKLYQDLDKTWAVVAEAIQTILRREAYPHPYEALKALTRTNQQMTEQT IHEFIQNLDVSDEIKKELMAITPHNYTGV >gi|281305230|gb|ADEF01000042.1| GENE 48 56201 - 57613 1279 470 aa, chain + ## HITS:1 COG:BS_ypuL KEGG:ns NR:ns ## COG: BS_ypuL COG1187 # Protein_GI_number: 16079373 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Bacillus subtilis # 236 456 3 225 229 167 44.0 3e-41 MDSELEKNFQEQSLEQGNQSRETYQRPSGNNERDARYGERKPRRRIQRPYDGERMSRPTS EGGFRPEGFGNNLENNNVERTPSRPYRPRYSNNEQGEYRSRYRRDYQSGYQSRRQEGYRP RYHNDVDEGYSSRQSGGYRPRYNNDGENGYQSRQGGYRPRYNNNDSQSGYSREGGYNRGG YQPRGNYSNRGGYNRGGYQQGGYRQHSPNYNPNAKYSLKKRIEYNEEHIDPTVPVRLNKY LANAGVCSRREADEFIQAGVVKVNGEVVTELGTKVLRSDEVVFHDQPVSLEKKVYVLLNK PKDYVTTSDDPQQRKTVMDLVKNACPERIYPVGRLDRNTTGVLLFTNDGDLASKLTHPKF LKKKVYHVFLDKNVTAHDMQQIAEGIELEDGEIHADAIEYTNETEKNQVGIEIHSGKNRI VRRIFESLGYRVIKLDRVQFAGLTKKNLRRGDWRYLTAQEVDMLRMGAFE >gi|281305230|gb|ADEF01000042.1| GENE 49 57741 - 59135 1214 464 aa, chain + ## HITS:1 COG:sll0495 KEGG:ns NR:ns ## COG: sll0495 COG0017 # Protein_GI_number: 16332045 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Synechocystis # 1 464 52 513 513 534 53.0 1e-151 MKRTKIIDVLQSTDFNQEVLVKGWVRTHRSSKAVHFIALNDGSTIKNVQIVVDPETIDPE TLKNITTGACLCVSGTLVESQGQGQTVEIQGKEIEIYGLCGNDYPMQKKGQSFEYMRQHA HLRLRTNTFGAVMRIRHNMAIAIHKYFHDHGYFYFHTPIITASDAEGAGEMFQVTTQDLN NLQRDEQGKVKYDDDFFGKMTSLTVSGQLEGELGATALGQIYTFGPTFRAENSNTPRHLA EFWMIEPEIAFTDLDDLMGIEEEFIKYCVQWALDNCKDDLEFLNKMIDKTLLTRLQSVVN GSFVRLDYSEGIKILEEAVKSGQKFEYPVSWGMDLASEHERYLVEHHFKKPVIMYNYPKE IKAFYMKINEDGKTVQGTDVLFPQIGEIIGGSVREESYEKLLGEIEHRHIPMKDMWWYLD TRKFGSCPHGGFGLGFERLILFVTGMQNIRDVIPFPRTPKSAEF >gi|281305230|gb|ADEF01000042.1| GENE 50 59363 - 59740 458 125 aa, chain + ## HITS:1 COG:PH0854 KEGG:ns NR:ns ## COG: PH0854 COG0251 # Protein_GI_number: 14590714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Pyrococcus horikoshii # 4 124 16 136 137 135 57.0 1e-32 MKSVHSEKAPAAVGPYSQAIEANGFVFASGQLPIDPSTGKFPEGGIKEQTRQSILNAQAV LKAAGLDLSKVIKTTVYLSDMANFGAMNEVYAEFFAEPYPARSAVAVRTLPKEALVEVEC IAVKA >gi|281305230|gb|ADEF01000042.1| GENE 51 59900 - 60907 1125 335 aa, chain - ## HITS:1 COG:aq_1866 KEGG:ns NR:ns ## COG: aq_1866 COG0136 # Protein_GI_number: 15606903 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Aquifex aeolicus # 2 333 4 337 340 367 55.0 1e-101 MKVAIVGASGAVGQEFLRILEERNFPINDLVLFGSERSAGKTYNFKGKDYTVKRLQHNDD FKDVDFAFTSAGGGISKEFAETITKHGAIMIDNSSAFRMDKDVPLVVPEVNAEDALNRPR NIIANPNCTTIMMVVVLKPIEQLSHIKRVRISSYQSASGAGAAAMAEVQQQYKELVETGE VKTIQKFPHQLAYNVIPQIDVFTENGYTKEEMKMFNETQKIMHSDIKTSATCVRVSSLRS HSEAVWIETEKPLDVEEVRKAIAAAPGCKVKDDPNAGLYPMPLESAGHDDIYVGRIRKDL ADDNSITLWLTGDQIRKGAALNAVQIAEYLIKKER >gi|281305230|gb|ADEF01000042.1| GENE 52 61020 - 61223 83 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFSLSYASSFIEECYSYHEKYRKYWFCKIQGTLERRRINAEFSLQTPSQNSRENIQRQC WSQICEL >gi|281305230|gb|ADEF01000042.1| GENE 53 61341 - 61454 88 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQKWADFAKIETFSSWNIDLTHLETLFRGVIHILQRP Prediction of potential genes in microbial genomes Time: Sat May 28 07:14:17 2011 Seq name: gi|281305228|gb|ADEF01000043.1| Prevotella timonensis CRIS 5C-B1 contig00018, whole genome shotgun sequence Length of sequence - 4558 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 60 - 119 4.0 1 1 Tu 1 . + CDS 139 - 4401 3369 ## COG4724 Endo-beta-N-acetylglucosaminidase D + Term 4487 - 4535 6.3 Predicted protein(s) >gi|281305228|gb|ADEF01000043.1| GENE 1 139 - 4401 3369 1420 aa, chain + ## HITS:1 COG:BH0785_1 KEGG:ns NR:ns ## COG: BH0785_1 COG4724 # Protein_GI_number: 15613348 # Func_class: G Carbohydrate transport and metabolism # Function: Endo-beta-N-acetylglucosaminidase D # Organism: Bacillus halodurans # 1 555 1 552 556 255 31.0 5e-67 MNVKRLFGMTFLTLLCLGTVKAQQPYGGCWHPKDIKDWSPKTDPNAKFNRSRVPLAPRFR EPMPMKANRNQYYEGQVCNASILFPTCSLCPSQGANNFVGYQPTYWQYMDKLVYWAGSAS EGIIIPPPAGSIDAAHASGVKVLGQIFFPPNTYGGNPEWVYELLKRENGKYIYAIKLYEI AKYLGFDGWFINQETAVYFPTAWPEFIKEFNRVADEAGDTQMEIQWYNASHQPNVGILAS HKNTSQFLEYGSVGDYRSYADRIGCKQEDIFSKIYGGIQCVDAGLCGFGDELRKVFDVNG HSGSVDLFCPEERIWKDNVKDLLNTSNNQGQKAYTAMQFTFMNEEATWVNRLGDPSKITD NGTHTSWPGMSGCVIERSAIQQMPFVSDMSVGIGKYRFVKGEKRATQDWYHSGMQSVLPT WRWWIENRGDLKVATNWADAYNVSNSMTISGKLSQGDHLMRLYKTKIDVTEGGKFKLVYK CSDDNTIEVKLGVESKVDGQMVTLNNPVKTNENGWTVAEYDLSPLNGQTVYMIALNLKTN VEQPNYVLSIGQIAMLPANYVPKQMSITNLSNGTKFEEYKGDLRLTWDWEENTDLDHFDI YVKSETGENKLVGQTRGEGFYVPTFDRNGKDKKVEVEVVPVMKDGSEQTPAKLEVDYPAA QLSVVTISPSKSFVKVGEEVTLKAKGTGKPTGWKWTLPETLELKAGSKLTDNTITVIAKA VGKQNVKLEATNDAGTSSTEVCAFDVLEEHEIQEVNNVALHKTIKSYSGATGDAESPRNI IDGDTNPRDIHNKWCNINSTHECVIDLQGDYRIYGFKIFDCKSGPESNENFGNYRIYLSE DGINWKLLVDEQGRERDNIKEDYIMPTTARYVKLNPYSDYGMTLRIWEFEVYGVSNSNLK LSADDEVRMNVSGTHQVVLTYDMNGEERQDQFYCKVESSSTDLVLGEPVEDKNAHTFTVP VTTGKNMGVSSLKFMVHNGSSYKEKTVKVIIDDPKAVNALAGLSANLLQYPDGYVYNAPV KKYTTTALTDGDLLNEACGMVENPSKHERDFWAVFSNDMAWNISKIKIHIPNNNQGKDDN DVEGCVNSKIEIRVSDDGSRGWTTIHTFENIGKVSELEYMLPEYVTARELAVVCTLNPLF YPSLSEVEAFEQNKEAVATCIPVEVKEGWNGDVIVEALPADKHVTKTVDAKGWTFYTRDI EREEGGYLAGANRMITTKKGDVFKLAPFDQNNALVIDEIYKKKTILFNKPEEAERIYVLY TSTGGGNNDIMVAPVYEDGTTGDEYNMNAVDWYGYDDNMTAVGGLGRIMAVNLEDGDAEL DEFDFNNDFRIFEYEYDGIDKNKKVKGLTFRGFSNGQCGTILAVSKFGLPVPTGLKEIKN TTPTHIVGIYNLYGMKLQVPTKGFNIIKFADGTTKKVFIK Prediction of potential genes in microbial genomes Time: Sat May 28 07:16:48 2011 Seq name: gi|281305124|gb|ADEF01000044.1| Prevotella timonensis CRIS 5C-B1 contig00001, whole genome shotgun sequence Length of sequence - 119990 bp Number of predicted genes - 105, with homology - 99 Number of transcription units - 49, operones - 16 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 149 - 208 5.3 1 1 Tu 1 . + CDS 271 - 3126 2489 ## PRU_0256 hypothetical protein + Prom 3128 - 3187 1.7 2 2 Tu 1 . + CDS 3323 - 4678 1486 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 3 3 Tu 1 . - CDS 4857 - 6293 1009 ## COG0591 Na+/proline symporter - Prom 6423 - 6482 6.6 + Prom 6379 - 6438 2.7 4 4 Tu 1 . + CDS 6460 - 7830 1384 ## COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) 5 5 Op 1 . - CDS 9193 - 10056 647 ## COG0575 CDP-diglyceride synthetase 6 5 Op 2 . - CDS 10071 - 12092 1153 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Term 12106 - 12141 -0.3 7 5 Op 3 . - CDS 12142 - 12501 395 ## COG0799 Uncharacterized homolog of plant Iojap protein - Prom 12701 - 12760 77.4 + TRNA 12683 - 12756 51.9 # Gln CTG 0 0 8 6 Op 1 . + CDS 13036 - 14007 826 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 9 6 Op 2 . + CDS 14082 - 14807 567 ## COG0778 Nitroreductase + Term 14827 - 14866 1.2 - Term 14978 - 15026 7.1 10 7 Tu 1 . - CDS 15079 - 17064 1809 ## PRU_1553 hypothetical protein - Prom 17160 - 17219 5.5 - Term 17197 - 17232 -1.0 11 8 Tu 1 . - CDS 17253 - 18179 884 ## COG0598 Mg2+ and Co2+ transporters - Prom 18204 - 18263 4.1 12 9 Tu 1 . - CDS 18298 - 18567 92 ## - Prom 18592 - 18651 2.8 13 10 Tu 1 . + CDS 18610 - 19017 306 ## COG0607 Rhodanese-related sulfurtransferase + Term 19094 - 19144 -0.9 + Prom 19159 - 19218 8.4 14 11 Op 1 . + CDS 19317 - 19562 375 ## gi|282880915|ref|ZP_06289606.1| transglycosylase associated protein 15 11 Op 2 . + CDS 19566 - 19883 367 ## COG0393 Uncharacterized conserved protein + Term 19925 - 19971 -0.2 - Term 19980 - 20012 -0.2 16 12 Op 1 . - CDS 20037 - 20771 690 ## COG0637 Predicted phosphatase/phosphohexomutase 17 12 Op 2 . - CDS 20777 - 22135 1463 ## COG0166 Glucose-6-phosphate isomerase 18 12 Op 3 . - CDS 22142 - 23140 787 ## COG0240 Glycerol-3-phosphate dehydrogenase 19 13 Tu 1 . - CDS 23244 - 24980 1808 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 25144 - 25203 6.0 20 14 Tu 1 . - CDS 25661 - 29683 2172 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 29711 - 29770 5.5 - Term 29756 - 29795 1.1 21 15 Op 1 . - CDS 29820 - 30965 693 ## COG0763 Lipid A disaccharide synthetase 22 15 Op 2 . - CDS 31028 - 31801 498 ## COG0496 Predicted acid phosphatase - Prom 31999 - 32058 6.9 + Prom 31749 - 31808 6.2 23 16 Op 1 25/0.000 + CDS 31997 - 32761 787 ## COG1192 ATPases involved in chromosome partitioning 24 16 Op 2 . + CDS 32893 - 33801 811 ## COG1475 Predicted transcriptional regulators 25 16 Op 3 . + CDS 33811 - 34566 544 ## PRU_0015 hypothetical protein 26 16 Op 4 . + CDS 34637 - 35956 920 ## COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) 27 16 Op 5 . + CDS 35982 - 38249 2004 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases + Term 38278 - 38313 -0.6 28 17 Tu 1 . - CDS 38484 - 38834 297 ## PRU_0010 MerR family transcriptional regulator - Prom 38866 - 38925 5.5 29 18 Op 1 . + CDS 39668 - 39859 140 ## 30 18 Op 2 . + CDS 39953 - 40351 93 ## + Term 40489 - 40526 3.6 + Prom 41068 - 41127 11.7 31 19 Tu 1 . + CDS 41182 - 43803 3056 ## COG0013 Alanyl-tRNA synthetase + Prom 44168 - 44227 5.7 32 20 Tu 1 . + CDS 44270 - 49273 3580 ## COG3291 FOG: PKD repeat + Term 49299 - 49342 2.3 + Prom 49324 - 49383 5.6 33 21 Tu 1 . + CDS 49447 - 50367 766 ## DICTH_0289 alpha-rhamnosidase + Prom 50382 - 50441 3.4 34 22 Tu 1 . + CDS 50493 - 51377 583 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 51460 - 51501 2.1 35 23 Tu 1 . - CDS 51362 - 51964 418 ## PRU_2353 hypothetical protein - Prom 52167 - 52226 6.7 36 24 Tu 1 . - CDS 52241 - 52906 443 ## COG0692 Uracil DNA glycosylase - Prom 52929 - 52988 2.1 - Term 52937 - 52981 7.1 37 25 Tu 1 . - CDS 53011 - 54528 1664 ## COG0696 Phosphoglyceromutase - Prom 54741 - 54800 4.1 - Term 54766 - 54806 5.2 38 26 Tu 1 . - CDS 54835 - 55266 447 ## COG0071 Molecular chaperone (small heat shock protein) - Prom 55380 - 55439 5.8 39 27 Op 1 . + CDS 56443 - 57894 926 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 40 27 Op 2 . + CDS 57965 - 59791 1502 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase 41 27 Op 3 . + CDS 59792 - 60802 779 ## PRU_0088 octopine/opine/tauropine dehydrogenase-like protein 42 27 Op 4 . + CDS 60813 - 61646 755 ## COG3475 LPS biosynthesis protein 43 27 Op 5 . + CDS 61653 - 62678 831 ## BVU_0889 hemolysin hemolytic protein 44 27 Op 6 . + CDS 62727 - 65933 2776 ## COG0793 Periplasmic protease + Term 65989 - 66040 8.1 - Term 66040 - 66070 2.0 45 28 Op 1 . - CDS 66088 - 67269 785 ## BVU_2037 hypothetical protein 46 28 Op 2 11/0.000 - CDS 67271 - 70378 2237 ## COG3696 Putative silver efflux pump 47 28 Op 3 . - CDS 70397 - 71533 938 ## COG0845 Membrane-fusion protein - Prom 71555 - 71614 2.3 48 29 Tu 1 . - CDS 71631 - 72071 432 ## BF1284 hypothetical protein + Prom 71767 - 71826 4.7 49 30 Tu 1 . + CDS 72058 - 72207 62 ## 50 31 Tu 1 . - CDS 72268 - 73344 783 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain - Prom 73523 - 73582 2.8 - Term 73522 - 73559 0.5 51 32 Tu 1 . - CDS 73761 - 73943 182 ## - Prom 74175 - 74234 10.2 + Prom 74110 - 74169 6.2 52 33 Tu 1 . + CDS 74215 - 74658 557 ## gi|282880952|ref|ZP_06289643.1| hypothetical protein HMPREF9019_0052 + Term 74692 - 74733 8.1 - Term 74783 - 74821 -0.6 53 34 Tu 1 . - CDS 74830 - 75765 923 ## COG0330 Membrane protease subunits, stomatin/prohibitin homologs - Prom 75794 - 75853 5.2 54 35 Op 1 . - CDS 76124 - 77056 900 ## COG1162 Predicted GTPases - Prom 77079 - 77138 2.4 - Term 77085 - 77140 10.1 55 35 Op 2 . - CDS 77151 - 77711 705 ## COG0233 Ribosome recycling factor - Prom 77951 - 78010 6.3 56 36 Tu 1 . + CDS 77482 - 78018 234 ## gi|282880956|ref|ZP_06289647.1| conserved domain protein - Term 78066 - 78130 1.0 57 37 Tu 1 . - CDS 78219 - 79031 793 ## COG0030 Dimethyladenosine transferase (rRNA methylation) - Prom 79175 - 79234 8.0 - Term 79357 - 79399 7.1 58 38 Op 1 . - CDS 79441 - 80721 1145 ## BT_3236 hypothetical protein 59 38 Op 2 . - CDS 80731 - 82089 1272 ## BT_3242 hypothetical protein 60 38 Op 3 . - CDS 82097 - 83686 1271 ## BT_3238 hypothetical protein 61 38 Op 4 . - CDS 83707 - 87018 3216 ## BT_3239 hypothetical protein - Prom 87172 - 87231 9.9 - Term 87908 - 87961 -0.3 62 39 Tu 1 . - CDS 88027 - 88875 749 ## PRU_2086 putative lipoprotein - Prom 88991 - 89050 3.8 63 40 Tu 1 . - CDS 89060 - 89254 280 ## gi|282880963|ref|ZP_06289654.1| conserved hypothetical protein - Prom 89367 - 89426 3.8 - Term 89394 - 89452 5.7 64 41 Op 1 . - CDS 89473 - 90615 1133 ## BT_4407 hypothetical protein 65 41 Op 2 . - CDS 90646 - 91764 1308 ## BT_4406 hypothetical protein 66 41 Op 3 . - CDS 91786 - 93417 1503 ## BT_4405 hypothetical protein 67 41 Op 4 . - CDS 93424 - 96717 3143 ## BT_4404 hypothetical protein - Prom 96777 - 96836 4.7 68 42 Tu 1 . - CDS 96871 - 97896 603 ## COG3712 Fe2+-dicitrate sensor, membrane component - Prom 98011 - 98070 7.4 69 43 Op 1 . - CDS 98612 - 99274 450 ## alr3407 hypothetical protein 70 43 Op 2 . - CDS 99264 - 100601 850 ## COG1106 Predicted ATPases - Prom 100774 - 100833 6.1 + Prom 100671 - 100730 4.4 71 44 Tu 1 . + CDS 100838 - 101032 101 ## gi|282880971|ref|ZP_06289662.1| conserved hypothetical protein 72 45 Tu 1 . - CDS 101010 - 101567 300 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 101652 - 101711 4.9 - Term 101694 - 101732 5.5 73 46 Op 1 50/0.000 - CDS 101759 - 102307 566 ## PROTEIN SUPPORTED gi|237717427|ref|ZP_04547908.1| 50S ribosomal protein L17 - Prom 102370 - 102429 3.8 74 46 Op 2 26/0.000 - CDS 102442 - 103434 1158 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 75 46 Op 3 36/0.000 - CDS 103447 - 104052 913 ## PROTEIN SUPPORTED gi|150003363|ref|YP_001298107.1| 30S ribosomal protein S4 - Term 104065 - 104109 8.1 76 46 Op 4 48/0.000 - CDS 104119 - 104508 626 ## PROTEIN SUPPORTED gi|150003364|ref|YP_001298108.1| 30S ribosomal protein S11 - Term 104524 - 104572 4.7 77 46 Op 5 . - CDS 104587 - 104967 603 ## PROTEIN SUPPORTED gi|150003365|ref|YP_001298109.1| 30S ribosomal protein S13 - Prom 104987 - 105046 2.8 78 47 Op 1 . - CDS 105049 - 105165 178 ## PROTEIN SUPPORTED gi|229496182|ref|ZP_04389902.1| ribosomal protein L36 79 47 Op 2 3/0.000 - CDS 105178 - 105396 237 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 - Prom 105417 - 105476 4.8 80 47 Op 3 53/0.000 - CDS 105623 - 106960 883 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 81 47 Op 4 48/0.000 - CDS 106964 - 107410 546 ## PROTEIN SUPPORTED gi|150003368|ref|YP_001298112.1| 50S ribosomal protein L15 82 47 Op 5 50/0.000 - CDS 107434 - 107610 230 ## PROTEIN SUPPORTED gi|167933113|ref|ZP_02520200.1| 50S ribosomal protein L30 83 47 Op 6 56/0.000 - CDS 107623 - 108135 738 ## PROTEIN SUPPORTED gi|167933112|ref|ZP_02520199.1| 30S ribosomal protein S5 84 47 Op 7 46/0.000 - CDS 108142 - 108486 451 ## PROTEIN SUPPORTED gi|167933111|ref|ZP_02520198.1| 50S ribosomal protein L18 85 47 Op 8 55/0.000 - CDS 108505 - 109077 802 ## PROTEIN SUPPORTED gi|167933110|ref|ZP_02520197.1| 50S ribosomal protein L6 86 47 Op 9 50/0.000 - CDS 109092 - 109487 569 ## PROTEIN SUPPORTED gi|53715452|ref|YP_101444.1| 30S ribosomal protein S8 - Prom 109513 - 109572 4.2 - Term 109495 - 109521 -0.6 87 47 Op 10 50/0.000 - CDS 109580 - 109882 438 ## PROTEIN SUPPORTED gi|150003374|ref|YP_001298118.1| 30S ribosomal protein S14 88 47 Op 11 48/0.000 - CDS 109888 - 110442 827 ## PROTEIN SUPPORTED gi|167933171|ref|ZP_02520258.1| 50S ribosomal protein L5 89 47 Op 12 57/0.000 - CDS 110442 - 110759 394 ## PROTEIN SUPPORTED gi|167933170|ref|ZP_02520257.1| 50S ribosomal protein L24 90 47 Op 13 50/0.000 - CDS 110779 - 111144 563 ## PROTEIN SUPPORTED gi|29348126|ref|NP_811629.1| 50S ribosomal protein L14 91 47 Op 14 . - CDS 111147 - 111413 378 ## PROTEIN SUPPORTED gi|212695296|ref|ZP_03303424.1| hypothetical protein BACDOR_04836 92 47 Op 15 . - CDS 111416 - 111610 201 ## PROTEIN SUPPORTED gi|150003379|ref|YP_001298123.1| 50S ribosomal protein L29 93 47 Op 16 50/0.000 - CDS 111614 - 112042 574 ## PROTEIN SUPPORTED gi|53715459|ref|YP_101451.1| 50S ribosomal protein L16 94 47 Op 17 61/0.000 - CDS 112057 - 112785 1045 ## PROTEIN SUPPORTED gi|160883058|ref|ZP_02064061.1| hypothetical protein BACOVA_01021 95 47 Op 18 59/0.000 - CDS 112794 - 113198 533 ## PROTEIN SUPPORTED gi|53715461|ref|YP_101453.1| 50S ribosomal protein L22 96 47 Op 19 60/0.000 - CDS 113232 - 113498 449 ## PROTEIN SUPPORTED gi|167933129|ref|ZP_02520216.1| 30S ribosomal protein S19 97 47 Op 20 61/0.000 - CDS 113520 - 114344 1284 ## PROTEIN SUPPORTED gi|212695302|ref|ZP_03303430.1| hypothetical protein BACDOR_04842 98 47 Op 21 61/0.000 - CDS 114352 - 114696 360 ## PROTEIN SUPPORTED gi|29348134|ref|NP_811637.1| 50S ribosomal protein L23 99 47 Op 22 58/0.000 - CDS 114712 - 115341 856 ## PROTEIN SUPPORTED gi|212695304|ref|ZP_03303432.1| hypothetical protein BACDOR_04844 100 47 Op 23 . - CDS 115341 - 115955 888 ## PROTEIN SUPPORTED gi|53715466|ref|YP_101458.1| 50S ribosomal protein L3 - Prom 116010 - 116069 4.3 + Prom 115956 - 116015 4.7 101 48 Tu 1 . + CDS 116045 - 116236 105 ## 102 49 Op 1 4/0.000 - CDS 116155 - 116460 466 ## PROTEIN SUPPORTED gi|29348137|ref|NP_811640.1| 30S ribosomal protein S10 - Prom 116482 - 116541 2.1 - Term 116485 - 116529 0.0 103 49 Op 2 51/0.000 - CDS 116552 - 118666 2511 ## COG0480 Translation elongation factors (GTPases) 104 49 Op 3 56/0.000 - CDS 118690 - 119166 729 ## PROTEIN SUPPORTED gi|29348139|ref|NP_811642.1| 30S ribosomal protein S7 - Prom 119238 - 119297 3.1 105 49 Op 4 . - CDS 119405 - 119788 597 ## PROTEIN SUPPORTED gi|150003391|ref|YP_001298135.1| 30S ribosomal protein S12 - Prom 119814 - 119873 9.9 Predicted protein(s) >gi|281305124|gb|ADEF01000044.1| GENE 1 271 - 3126 2489 951 aa, chain + ## HITS:1 COG:no KEGG:PRU_0256 NR:ns ## KEGG: PRU_0256 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 951 1 954 954 1235 66.0 0 MRTHSVIALLLFVFVFVMADVNNFYSYAKQQASLRDTLRVGDSTQSHRTDTAKTQRTNNT KDTLTLDSLQLAIQKHNQIIDDSIRLDSLNRRKSKGIDAPVEYTADDSLIYDAKTKTAHL FGSSTVKYENMDLKSEKIRMSLDSNIVHATGAIKDTATKALEGTPVFKLGQDSYESDTMA FNFKTKKGLINNVYTQQEDGFLRSERSKRDSSGVVYMEHGRYTTCDKPHPDFYIALSRGK VRPGKDVVFGPAYLVVADVPLPLAVPYGFFPFTKSYSSGFIMPTYGDEMDRGFYLRDVGY YFAISDKIDLKVLGEIYTKGSWGITLASNYNKRYRFNGSVLLSYQDSRTGDKGLPDFSRQ QSYKVQWSHRQDQKANPFNSLLASVNFASSSYERNNLTSLYNPQSLTQSTRTSSVSWSTT FSSIGMSLSSSANLSQNMRDSSIAMTLPDLNISISRFYPFKRKHLVGDERWYEKISMSYT GRFSNSITTKEDKLFKSNLIKDWKNGFQHDIPISANFTLFNYLNVNPSFNFTDRMYSSKV RKSWNDRTQTEETDTIYGFNNVYNWSLNLGVSTKLYGMFIPNRKIFGDKVQAIRHVITPS VSFSYAPDFGSRRYGYYDYYQKTDADGNVSLVGYSPYQNGMYSVPGRGRSGNISVDLGNN IEMKVKSDKDSTGIKKISIIDELGLQMSYNMAAKEKPLSDLNMRIRLKWWKNYTFNMNAR FASYAYEIDEKGIPYEGNRTEWGMGRFGRFQGMSQNISYTLTPEKIKKLFGGKSEETDNK QRNKDDEEGHNTDIDTNLDKDMIDAQRGAKRKKGGEMAETDDDGYMPFKLPWSITFGYGI TMSEDRTVSKFNYNTMRYPYKFTQTLNVSGNVRLSDGWNISFSSGYDFENKALSMTTASL QRDLHCFNMSCSVVLAPYTSYNFTFRANAATLMDALKYDKRSGYGNAIQWY >gi|281305124|gb|ADEF01000044.1| GENE 2 3323 - 4678 1486 451 aa, chain + ## HITS:1 COG:DR2025 KEGG:ns NR:ns ## COG: DR2025 COG0624 # Protein_GI_number: 15807020 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Deinococcus radiodurans # 15 438 18 440 459 408 48.0 1e-113 MQTYIKENQKRMLDELFSLIRIPSVSAQPEHHQDMIACANRWKELLLMAGVDKVEIMPTK GNPIVYAEKIVDPTAKTVLIYGHYDVMPAEPFELWKSNPFEAEIRDGHIWARGADDDKGQ SFIQAKAFEYVVKHNLLKHNVKFILEGEEEIGSPSLSDFCTEHQELLKCDVILVSDTSML SADLPSLTTGLRGLAYWQIEVTGPNHDLHSGHFGGAVANPINVLCKLLADVTNEDGRITI PGFYDDVEDIPTEERKLVAAIPFDEKAYKQNIGVDELFGEKGFSTIERNGFRPSFDVCGI WGGYTGEGSKTVLPSKAYAKLSTRLVPHQDHEKIGQLVVDYFKRVAPKTVKVDIQSLHGG QAYVCPIDLPAYQAAERGFEKAFGKRPLPVRRGGSIPIIATFEKILGVKTILMGFGLESN AIHSPNENMPLDMIWRGIEAVVNFHLEFDKL >gi|281305124|gb|ADEF01000044.1| GENE 3 4857 - 6293 1009 478 aa, chain - ## HITS:1 COG:sll1087 KEGG:ns NR:ns ## COG: sll1087 COG0591 # Protein_GI_number: 16330938 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Synechocystis # 23 413 26 420 512 125 29.0 1e-28 MTIILTILSYFAVLLLVSRLTAKQSTNDTFYRGNRQSPWYLVAFGMIGASISGVTFVSVP GMVNTIGMTYLQTCLGFVLGYVAVAFVLLPIYYRLKLTTIYSYLQQRLGTRSYKTGAWFF LLSKMSGAAVKFYVVCMILQRFVLDALGIPFVITVLVLVVLIWLYTRRGGIKTLVWTDTF QTFCMFMALIFIIVNVMSMLNLSVNEAVTTIVQDERSRVFVFDDWVSKQNFWKLFVSGIF IVVVMTGLDQDMMQKNLTCKTLREAQKDMCTYGLAFVPANLLFLCLGVLLSMLAQQEGIA LPSSGDELLPMFAATGKMGNMVVVLFTIGIVAASFSSADSALTALTTTYCVDIKEKADDE ALRHRVHAGMSVVFVIFILLFRTFNSTNLIDAIYILVSYTYGPLLGLFAFGLFTKYQVTD RWVPYFAILSPILCYVLDVLAQQLWGYHFGYELLMLNGAFTFAGLYVTRKKEPLRIGH >gi|281305124|gb|ADEF01000044.1| GENE 4 6460 - 7830 1384 456 aa, chain + ## HITS:1 COG:TM0539 KEGG:ns NR:ns ## COG: TM0539 COG1350 # Protein_GI_number: 15643305 # Func_class: R General function prediction only # Function: Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) # Organism: Thermotoga maritima # 9 425 7 421 422 469 55.0 1e-132 MSKQKKFILQENEIPTQWYNIQADMVNKPLPLLNPKTKQPVTVEDLAHIFNLECSKQELD TQHAWIDIPEPVREMYTYYRATPLVRAYALEKALDTPAHIYFKNESVNPLGSHKINSALA QCYYCKQEGTTNVTTETGAGQWGAALSYAAKIFGLEAAVYQVKISMQQKPYRSSIMRTFG ATVEGSPSMSTRAGKDIITRDPHHQGSLGTAISEAIELATTTPHCKYTLGSVLNHVSLHQ TVIGLEAEKQMAMAGEYPDKVIACFGGGSNFSGLAFPFMRHNLLDGKQTEFIAAEPSSCP KLTRGKFEYDFGDEAGYTPLLPMYTLGHDFKPANIHAGGLRYHGAGTIISQLVKDKLMHG VDIPQLEAFDAGLLFSRTEGIIPAPESCHAIASTIREAKKCKESGEAKVLLFSLSGHGLI DMTAYESYLSGDLRNYTISDEDIAQSLQNVPQVPMK >gi|281305124|gb|ADEF01000044.1| GENE 5 9193 - 10056 647 287 aa, chain - ## HITS:1 COG:PM1990 KEGG:ns NR:ns ## COG: PM1990 COG0575 # Protein_GI_number: 15603855 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Pasteurella multocida # 8 275 2 278 289 121 33.0 2e-27 MTSKQKNLITRSITGILFVAIMVTSFLQSFNMIVVFALITGLATWEFTGLVNEHKHVNVN RRITTVAGVYFFFAVAGVNSGAIQTNAVFVPYLLTIIYLFISGLYTKSGDSVNDWAYTML SQMYIALPLSTINVIAFRQAADGLNYYYYLLPLSIFIFLWTNDTGAYCTGSLFGKHKLFP RISPAKSWEGSIGGGILVLIVASIMYYIESQGENLSGLNLIEWLGLGLVVVVFGTLGDLV ESLLKRTLGIKDSGNILPGHGGILDRFDSSLMAIPASVVYLYSLTLV >gi|281305124|gb|ADEF01000044.1| GENE 6 10071 - 12092 1153 673 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 152 673 112 635 636 448 47 1e-125 MDNNKNPYNNNNDNQPKMPKFNMNWIYALVAIVLGILILTNGGNLLSAPNTSKKADYTVF QQYVAKGYADNVVINKDKSTLKMFVKPKYIREIFKATAKQTGTSPYLEVEFGSVSELEKF LMAERQAGKLTRFSYENESGSEYWNILMNLSFPIFLIVLWILFMRRMGGGAGGAGGGVFN VGKSKAKMYEKGNDIGVTFKDVAGQAGAKQEVQEIVDFLKNPHRYTDLGGKIPKGALLVG PPGTGKTLLAKAVAGEAGVPFFSMSGSDFVEMFVGVGASRVRDLFRQAKEKSPSIIFIDE IDAVGRARSKNPSMGGNDERENTLNALLTEMDGFGTNSGVIILAATNRADMLDSALLRAG RFDRQISVDLPDLPERKEIFLVHLRKVKTSPDLDIDFLSRQTPGFSGADIANVCNEAALI AARHNKKSVGKQDFLDAVDRIIGGLEKKTKIITANEKRTIALHEAGHATVSWFCEHANPL VKVSIVPRGRALGAAWYLPEERQITTKEQMLDELCALLGGRAAEELCTGHISTGALNDLE RATKTSYSMIAYAGMSEVLPNISYYNNQDYQFQKPYSETTAKIIDSEVLKMINDQYARAK QILTEHKEGHARLAELLQTREVIFAEDVEKIFGKRPWISRSQEIMQDNEPKLEDMPDEVK AAEEEHQRALKES >gi|281305124|gb|ADEF01000044.1| GENE 7 12142 - 12501 395 119 aa, chain - ## HITS:1 COG:slr1886 KEGG:ns NR:ns ## COG: slr1886 COG0799 # Protein_GI_number: 16330295 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Synechocystis # 3 118 26 140 154 82 37.0 1e-16 MKSSNQLVKTITKGIQEKKGQDIIIADLSDIDGAIANYFVICQGNSPAQVEAISESVGVT VHKDLKEKPINVVGLGLNQWVAIDFADVLVHVFLPETRAFYDLENLWEDAKLTKIPNID >gi|281305124|gb|ADEF01000044.1| GENE 8 13036 - 14007 826 323 aa, chain + ## HITS:1 COG:MG448 KEGG:ns NR:ns ## COG: MG448 COG0229 # Protein_GI_number: 12045307 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Mycoplasma genitalium # 176 323 2 149 150 201 63.0 2e-51 MKEQAELYLAGGCFWGTEHFLKQINGVLHTEVGYANGHGQNPSYEEVCADQTGFAETVHV VYNPQILRISLLLQLYFRTIDPTSLNKQGGDVGTQYRTGIYYTDAHDFPLIQAEMAKLGT QYTKKLQIEVLPLRNFYAAEDYHQDYLDKNPSGYCHVPQALMAYARVANKDTTESSRYVK KTDAELKRVLTPLQYEVTQHAATERPYDNAYNDEFRPGIYVDITTGEPLFLSTDKFESGC GWPAFSKPIDPHFLEEKQDSSHDMQRTEVRSAKGQAHLGHVFKDGPKDRGGLRYCINSAS LRFIPQEEMKAQGYEKYLILLEH >gi|281305124|gb|ADEF01000044.1| GENE 9 14082 - 14807 567 241 aa, chain + ## HITS:1 COG:PM0161 KEGG:ns NR:ns ## COG: PM0161 COG0778 # Protein_GI_number: 15602026 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Pasteurella multocida # 1 239 1 240 242 312 60.0 4e-85 MGLQDILNHRRAVRHYDPTKPLDNERVKHCLELATLAPTSSNMQLWECYHVTDPAVLKKL AHAQLDQQTATTAQQMVVFVTRRDKHRAHAKAVKAFEIENVRRNSPAEKHEKRIKKWKLY YDFVMPLFYTRCFGLLGLMRKLLAQVIGLFHPIVKQVTEADTRITVHKSCALAVQTFMLA MSEEGYDTCPVEGFDSWLVKKALGLPYCSEINMIITCGIRLPDGVWSNRYRLPFEEMYHH V >gi|281305124|gb|ADEF01000044.1| GENE 10 15079 - 17064 1809 661 aa, chain - ## HITS:1 COG:no KEGG:PRU_1553 NR:ns ## KEGG: PRU_1553 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 58 659 13 611 611 634 68.0 1e-180 MDSQENTLNQGNLESEKQVVNAEQATSSEAEMVKEETPSDKAASEVAEAQVENAYASNEE IETEEAQEEAPETSEDTLKEEEDADDAEQDPRVYQNKQEILDRLKEIVSSDEYPVKKELD HLKTMFYKFHIAEREAQQKEYLDKGGDPESYQIVPDSLEETFKTQMGVIKEKRAKIFQQQ EEEKQENLKKKEAIIEQIKGMATSPDQANKSFHDFKELQQQWKEIKSVPADKANELWRNY QLYVEQFYDLLNLNREAREYDFKKNLELKTKLCEAAENLANEEDVVSAFHQLQELHQQYR EIGPVSKELRDEIWNRFKAASTVVNKRHQQHFEELRAKENENLEKKIALCEKAEEIVAQE NTKAKDWEERTQEVIDLQAEWKTIGFAPQKMNVKIFERFRTACDQFFTNKATFFKEMKER FAENAEKKQALVEKAKALANSTDWKSTSDKLIALQKEWKTIGMVPRKRGDQLWNEFNTAC NTFFEARNQANAGAHNEERENLDKKRDIIKKLQEMSEEVGEELQEKVQALVDEFNKIGHV PYKEKDSVYKEFHNILDKLYSDLHISNARRHLDNFKNNLKNVAKRGDNALDNERGRLMHR YEQLKSDITTYETNLGFLNASSKKGSSLLDEMNRKVEKLKEDCEMIRAKIKAIDAENKKA E >gi|281305124|gb|ADEF01000044.1| GENE 11 17253 - 18179 884 308 aa, chain - ## HITS:1 COG:CAC0294 KEGG:ns NR:ns ## COG: CAC0294 COG0598 # Protein_GI_number: 15893586 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Clostridium acetobutylicum # 5 306 10 312 315 163 35.0 3e-40 MRTYWNTNDILRPIEEWQPNCWIQVTCPTEEDQQELVEHFKVPDYFFQDISDTDERARYE YDDGWMLIILRIPYVKEIRSRTPYTTVPLGIIHKRDVTITVCYYETNMMIDFVSYQQKRN SGFTDYVDMIFRLFLSSAVWYLKRLKQISTLIEKAKHNLDHEVNNESLIGLSRLQDSLTY FITSIRGNENLLAKLKFKLQVDELDVDLIEDVNIEMTQARETTSIYANILESTMDTYSSI INNNMNTVMKTLTSVSILMMSTTLVASLYGMNVINGMETYKYGFIVAIGISILVAVLSWA IMRYKRFI >gi|281305124|gb|ADEF01000044.1| GENE 12 18298 - 18567 92 89 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLRHLNANYFTFAVLRTKTNTPSFVRFLSIYLTYLQRRKAFSVEKKINKFAFRRINIIF FRYLCKCITKHSKDVFNEIRVTAPRLVIQ >gi|281305124|gb|ADEF01000044.1| GENE 13 18610 - 19017 306 135 aa, chain + ## HITS:1 COG:MA0746 KEGG:ns NR:ns ## COG: MA0746 COG0607 # Protein_GI_number: 20089631 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Methanosarcina acetivorans str.C2A # 24 130 36 151 151 68 36.0 4e-12 MNMNKLKGLLIMMMGSIFGGCIQPDGIHTMNANAFEKAIQAPDVQLIDVRTADEFAAGKI GNAANIDVLQPDFLRQVQARFSTEKPVFVYCRSGKRSLNAARKLQKAGFTVNNLQGGILE WEQAGKPIASSDTKL >gi|281305124|gb|ADEF01000044.1| GENE 14 19317 - 19562 375 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880915|ref|ZP_06289606.1| ## NR: gi|282880915|ref|ZP_06289606.1| transglycosylase associated protein [Prevotella timonensis CRIS 5C-B1] # 1 81 1 81 81 76 100.0 6e-13 MFGLIGSIIIGSLAGFIAGKIMRGGGFGFLWNLILGIIGGVVGGWALSLLNISWGGTIGS LGTAVVGAVLLLWIVSLFKKS >gi|281305124|gb|ADEF01000044.1| GENE 15 19566 - 19883 367 105 aa, chain + ## HITS:1 COG:STM0930 KEGG:ns NR:ns ## COG: STM0930 COG0393 # Protein_GI_number: 16764292 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Salmonella typhimurium LT2 # 1 103 1 103 107 128 65.0 3e-30 MLITTTPTIEGSTILSYKGVVTGETIIGANVFKDFLAGIRDFIGGRSNAYEKVLRQAKET SMQEMQDRAAELGANAIVGIDIDYETIGEGNSMLMVAVSGTAVVI >gi|281305124|gb|ADEF01000044.1| GENE 16 20037 - 20771 690 244 aa, chain - ## HITS:1 COG:MA0451 KEGG:ns NR:ns ## COG: MA0451 COG0637 # Protein_GI_number: 20089342 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Methanosarcina acetivorans str.C2A # 21 244 3 217 218 100 30.0 2e-21 MFQQTINNYLKKHGFGTFAPKVVLFDMDGVLYNSMPHHVVAWQKAMQSFGIDMTEKDVYA TEGMKGIDTIRMLVRAQQNREISEKEAQAMYDEKGRLFHEMPQTPIFEGVLTIMRKMKQC GMRIGVVTGSAQKPLINRVAKDFQDFVLPEHIVTAYSIRHGKPAPDPYLKGLELTGGFQP WEGIVVENAPMGVRAGVAAQIFTVAINSGPLPNQLLLEEGADLIYPDMMTFAQHWDELIQ AATH >gi|281305124|gb|ADEF01000044.1| GENE 17 20777 - 22135 1463 452 aa, chain - ## HITS:1 COG:BH3343 KEGG:ns NR:ns ## COG: BH3343 COG0166 # Protein_GI_number: 15615905 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Bacillus halodurans # 4 448 5 449 450 497 54.0 1e-140 MKSISLDITKATQFLKPGTVEDFESKVKEAQDALEKGTCPGNDFLGWLHLPSSITPDFLN DIQTCANTLRENCEVVVVAGIGGSYLGARAVIEALNNSFAWLVNDQKNPTILFAGNNIGE DYLAELTDYLKDKKFGVINISKSGTTTETALTFRLLKKQCEEQRGKEEAKKVIVAITDAK KGAARTCADKEGYKSFIIPDNVGGRFSVLTPVGLLPIACAGFSIKELVQGATDMEKATGK DVPYQENIAAQYAAVRNALYSQAGKKIEIVVNYQPKLHFMAEWWKQLYGESEGKEHKGIF PAACDFTTDLHSMGQWIQEGERSIFETVISIEQPQRKMLFPKDEENLDGLNFLAGKRVDE VNKMAELGTRLAHVDGGVPNLRISVPELNEYYIGQLIYFFEIACGISGNLLSVNPFNQPG VEAYKKNMFALLNKPGYEAESKAIQERLANEK >gi|281305124|gb|ADEF01000044.1| GENE 18 22142 - 23140 787 332 aa, chain - ## HITS:1 COG:BS_gpsA KEGG:ns NR:ns ## COG: BS_gpsA COG0240 # Protein_GI_number: 16079340 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Bacillus subtilis # 7 315 3 312 345 158 31.0 1e-38 MNYNCGKIAIIGGGSWATAIAKIVVSHTHHIGWYMRRDDRIADFKRLEHNPAYLTSLHFN IREIFFSSDINKIAEAYDTLIFVTPSPYFKNHLKKLKTRLRDKFIITAIKGIVPDENVVC SEYFHRVYDVPYENLAVIGGPSHAEEVALDRLSYLTIGCSNIEKAEAFAELIASEVIKTK ISTDVLGIEYSSVLKNVYAIASGICSGLKYGDNFQAVLIANAVQEMNRFLMSVHPIERSP YDSVYLGDLLVTCYSNFSRNRTFGTMIGKGYSVKSAQIEMEMIAEGYFGTKCMKEINKHM HVNMPILDAVYNILYEHISPQIEIKLLTDSFR >gi|281305124|gb|ADEF01000044.1| GENE 19 23244 - 24980 1808 578 aa, chain - ## HITS:1 COG:BS_lysS KEGG:ns NR:ns ## COG: BS_lysS COG1190 # Protein_GI_number: 16077150 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Bacillus subtilis # 5 499 10 497 499 458 50.0 1e-128 MNVLELSEQEIGRRQSLQELRNMGIDPYPAAEFHTNAFSTDIKEQYQESEEKREVVIAGR MMTRRIMGKASFMELQDSKGRIQVYITRDDICPDDNKDLYNVVFKRLMDIGDFVGIKGFV FKTQTGEISVHAQSLTLLSKALKPLPIVKYKDGVAYDKFEDPELRYRQRYVDLVVNDGVK NTFLQRATVLRTMRKVLDDAGYTEVETPTLQSIAGGASARPFTTHFNALNIDMYMRIATE LYLKRLIVGGFEGVYEIGKNFRNEGMDRNHNPEFTCMELYVQYKDYNWMMEFTEKLLETV CIAVNGSPEKEIDGQLVSFKAPYRRLPILDAIKEKTGYDLNGKGENEIREICKKLNMEID DSMGKGKLIDEIFGEFCEGTYIQPTFITDYPVEMSPLTKMHRSKPGLTERFELMVNGKEL ANAYSELNDPIDQEERFQEQMKLADKGDDEAMIIDHDFLRALQYGMPPTSGIGIGIDRLV MLMTGKTFIQEVLLFPQMKPEKKIPQSTIEEWAEIGVPEQWVAVFRKAGYNLISDIKDVK AQALQMNVCGINKKYKLGYEQPKVEQFQEWIDRSQKNS >gi|281305124|gb|ADEF01000044.1| GENE 20 25661 - 29683 2172 1340 aa, chain - ## HITS:1 COG:all4900 KEGG:ns NR:ns ## COG: all4900 COG0553 # Protein_GI_number: 17232392 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Nostoc sp. PCC 7120 # 564 1339 94 868 869 538 38.0 1e-152 MDVSNLNNSEITVLKTMTLLYEISMTENEWKKVAGRIMEERLFEKAFHHLYKQGFLVRDS GFYGTAKRFRVHPAVYFCLLREIKDDLFFPLYDSLYSYYHDKVKYKDAIKHTEILYGLFS ERISIRNKERITVILKDLVDEVSYVFGNPDYETFVKNILTSFLSAQLDNILYNVLLKDMD VDWEYLRAMMLGEERELSIHSTTVFAFYYYLGTGKICIDSEKQPITSYALLIYAIASLYQ SDYANAYKLFVKVISTRKKELTYNNAVYGNCIINFYYTLSLLLLKEEKGKNKLEKLVALE CMRSSAENQILIAPLYYFFCKKRNVNLMNGVVLNVFDENNENNAIKHLTCAIIKQLNIKN ELIAHFEQTAGTTHAAFLNTETQCCKNNDEDGAKMRRLAKSSLLERLDVKPFWVTKLEDL LAYTQEQKQETKKGSSDTQLVYLIMFERIIPILKKRLKNGTWSVGRELTIRTFKNLHDNC MDETDIAFSNSVEPWEYDIYLRKYIYLLENCNRVFCGSSYDMHPVSIHSDRPFLIINKNK DNSFGVSSNIADEIQNNAIGKCFVKNSETDYSIFNITPYEQKVYQTILSQKTYPAEAEQM LIRLIQSIGGKTQVHSNMVEGLEQIKKVEGKAVIALRVAPMEEEYFRLSFVVHPIEHFDF VPGQGSVSTITEVKGEKCIVVRKLKKEKSNLKTIEDKLAELEIMDEAQTLELSSITDSIT ISIVQLLPLIEWVQQNNETCEMEWLENCRIKYRGKLNCSNFNIALKSKNNWFEVVGDVCI DNEKMMSLYQLLQQMHQSDKSKYVKIGDNEYIKLSNDLKRILQQIDTATTENRSHLLMVP AAIGLMDEVVNHSDIHVKRNAAVDALIQKMKDAEKLHPQVPKTLNAQLRNYQEVGFEWMS KLTAWGAGACLADDMGLGKTLQTITLLLEQAQSGPSLIVVPASLVPNWRKELSRFAPTLN VFVLNDEVNREQAIEQISRNEVLVTTYALLTIHQQQLSQKSWNVVVLDEAHTIKNPNTKM SKAAMTLKAERKVILTGTPIQNHLSELWNLFQFINPGLLGNAEQFKKKYIIPIEENKNKE RQGQLKKLISPFLLRRTKGEVIEELPEKNDINLPVELSDNELAMYELHRKKAEELALAEE GVKLSTLSEITKLRQMACSISLVDKTWKKTSSKLSTFIALAESLNDSGGRALVFSQFTSF LAEVRQVMDKIKLPYLYLDGATPIKKREEIVDEFQKGNYPFFLISLKAGGLGLNLTAANY VIHLDPWWNPAIEQQATDRAYRIGQRNDVTVYHLIAQHTIEEKIIRLHKTKRDLADSLLE GGDMVRTLTQEEILDLLKEV >gi|281305124|gb|ADEF01000044.1| GENE 21 29820 - 30965 693 381 aa, chain - ## HITS:1 COG:FN0597 KEGG:ns NR:ns ## COG: FN0597 COG0763 # Protein_GI_number: 19703932 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipid A disaccharide synthetase # Organism: Fusobacterium nucleatum # 1 342 1 323 356 170 32.0 3e-42 MRYYLIAGEASGDLHASHLMMSLRSEDPDAQFRFFGGDLMQRVGGTLVKHYREMAFMGFV PVLMHLPEILKNMKICRADILQWHPDVVILVDYPGFNLKIAKFLKTHTDIPAYYYISPKI WAWKEYRIKSIKRDVNELFSILPFEVDFFEGKHHFPVHYVGNPTVDEVRQFKETYAESLD DFTGRNGLDRHKPIIALLAGSRKQEIKDNLPAMIEAANKVPGYQIVLAGAPSVDDSWYNR FLSGSNVSMVKNQTYALLSHATVALVTSGTATLETAMLNVPQVVCYKTPVPQLVRFAFNH VMTVKYISLVNLIADKEIVPELFADRFTVPQIADALQQILPNHANRSKMLQGYADVAHLL GDKIASKNAAQLMVRLLQRKH >gi|281305124|gb|ADEF01000044.1| GENE 22 31028 - 31801 498 257 aa, chain - ## HITS:1 COG:aq_832 KEGG:ns NR:ns ## COG: aq_832 COG0496 # Protein_GI_number: 15606188 # Func_class: R General function prediction only # Function: Predicted acid phosphatase # Organism: Aquifex aeolicus # 6 253 2 246 251 160 38.0 2e-39 MLNETPLILISNDDGYHSPGIRALVDMVSDLADVIVCAPEHARSGFSCAFSSVEYLRLKR RNNIGTAPVWSCSGTPVDCIKLAMSELCTERKPSLILGGINHGDNSTVNTHYSGTMGVAM EGCLKYIPSIAFSSCYYNEDANLEPLRPYVVQLVKKVLAEGLPKGVCLNVNFPAKESFQG LKVCRMTYGRWVDEIVTAHHPRAYDYYWVVGRYQNDEPENADTDQWALNHGYVAVTPTTM DVTAYEFLSKIKHWDAG >gi|281305124|gb|ADEF01000044.1| GENE 23 31997 - 32761 787 254 aa, chain + ## HITS:1 COG:BS_soj KEGG:ns NR:ns ## COG: BS_soj COG1192 # Protein_GI_number: 16081149 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Bacillus subtilis # 1 251 1 251 253 287 57.0 1e-77 MGKIIALANQKGGVGKTTTTINLGASLATLEKSVLIVDADPQANASSGLGVDLKEVDCSI YECIINKADVRDAIYTTDIDGLDIIPSHIDLVGAEIEMLNLDNREKIIKQILEPIRKEYD FILIDCSPSLGLITVNALTAADSVIIPVQCEYFALEGISKLLNTIKIIKSKLNTKLEIEG FLLTMYDSRLRLANQIYDEVKRHFQELVFKTVIQRNVKLSESPSHGLPVILYDAGSSGAK NHLALAKEIMSKNV >gi|281305124|gb|ADEF01000044.1| GENE 24 32893 - 33801 811 302 aa, chain + ## HITS:1 COG:SMc02801 KEGG:ns NR:ns ## COG: SMc02801 COG1475 # Protein_GI_number: 15967087 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Sinorhizobium meliloti # 16 298 10 294 296 191 40.0 2e-48 MAVRKKFSQSGKGSALGRGLDALISTDDIQTQGSSTINEIPIEQIEANPNQPRREFDQEA LEELASSIREIGIIQPITLRQVATDKYQIVAGERRWRASQIVGLEAIPAYIRTIDDETVM EMALVENIQREDLNAIEIALAYEKLMEKSGMTQEKVSKHVGKSRTAITNYLRLLKLPAQV QMALQKKEIDMGHARALLAIDSPSQQIKLFKEVVKNAYSVRKVEELAQQLKNGEDLQTAK KKMNTKKSMPEEYDMLKKRLSSFLDTKVQLTCSANGKGKISIPFANAAELERLMNIFDHL KD >gi|281305124|gb|ADEF01000044.1| GENE 25 33811 - 34566 544 251 aa, chain + ## HITS:1 COG:no KEGG:PRU_0015 NR:ns ## KEGG: PRU_0015 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 67 251 33 216 216 256 62.0 4e-67 MKISTEHTFCVIQYCCLLILLLFVTSVRAQVTTNDSIPDSDPRVILGDIDTKVIPAEAAL SPQDTLIFKDNGKVSKKVQRDWNKWRPDAKRAMWLAIVLPGAGQIYNRKYWKLPIVYGGF VGCMYALRWNNQMYHDYSQAYIDLMDNDPHSESYKQFLHLGNQINESNIERYKELFRKRK DRYRRWRDLSIFSIIGVYALSVIDAYVDASLSEFDISDDLSLRIEPTIMQKDAIHRQLLP EGFGIQCRLTF >gi|281305124|gb|ADEF01000044.1| GENE 26 34637 - 35956 920 439 aa, chain + ## HITS:1 COG:TP0623_2 KEGG:ns NR:ns ## COG: TP0623_2 COG0741 # Protein_GI_number: 15639611 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) # Organism: Treponema pallidum # 106 343 9 249 424 134 36.0 3e-31 MLAVFSTSLHAQVVDDETEIIVTNEKGENETIDLPEALTSEIDSLLHLYNTKTYLRKDAD CNLPNVNRTYEPDVYKQRLRRLPTIMEMAYNDVVQKFIDRYTNQLRNSVSIMLGASNFYM PIFEQALETYSLPLELKYLPVIESGLNPLAVSRVGATGLWQFMLATAKNYGLEVNSLLDE RCDPIKSSYAAANYLKDLYRIFGDWNLVIAAYNCGPDKLTQAIHRAGGSKDYWKIYPYLP RETRGYVPAFIAANYVMNYYCEHNICPMTTDLPAKTDTIVVSKDVHFQQIADVLKMDKEL IKSLNPQYRRDIVIGYTKPSTLRLPVPMINAFIDQQDSIYAHQADVLLSKRTEVKVNEDI PDFVGNRTNINSTRKTYSSKRSKSRKHRQRRSTKKSVTVRSGDTLSEIAARNNTTVKKLK KLNGIKGSNIRKGKKIRVK >gi|281305124|gb|ADEF01000044.1| GENE 27 35982 - 38249 2004 755 aa, chain + ## HITS:1 COG:BH1242 KEGG:ns NR:ns ## COG: BH1242 COG0317 # Protein_GI_number: 15613805 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Bacillus halodurans # 30 755 17 727 728 437 36.0 1e-122 MDEQNMKDTQKQVDEDKIIQDAFQHLLDTYLASRHRKKVDIITKAYNFARQAHKGVRRLS GEPYILHPIAVAQIACEEMGLGSTSISSALLHDVVEDTDYTVEDIENIFGHKIAQIVDGL TKISGGIFGDRASAQAENFKKLLLTMSDDIRVILIKICDRLHNMRTLESQPANKQYKIAG ETLYIYAPLANRLGLNKIKTELENLSFKFEHPEEYQDITNKLSFTKEQRERLFEQFTGPI RETLDAMGVDYEIKARVKSPYSIWNKMQTKHITFDEIYDILAVRIIFTPQVREDEINECF KIYVAISRIYKSHPDRLRDWLNHPKANGYQALHVTLMSKQGRWIEVQIRSDRMNEVAEQG FAAHWKYKENGEYTEDEGELNEWLRTIKEILDDPQPDAMDFLDTIKLNLFASEIFVFTPK GEIKTMPAGCTALDFAFQIHTLLGSHCIGAKVNHKLVPLSHKLQSGDQVEILTSKSQRVQ PSWLNFATTAKAKGKIQAMLRRDNREKQKEGEVILRAWLERNDMEMTMGVLNKLCEFHHL KKHESLFLCIGNKSIILTEKDLDELQNKKKGGTPSKWLKYIPFIGHDKKGEEHQTVEPLT IEDSYNKKKPIIIDDSNIDSLIFPNCCHPIPGDDILGFIDNQNHVEIHKRNCPVASKLKS SYGNRLLDAKWDMLKTRFFDATIEIKGIDRKGMLHDVVDVISDEMNVNMHKITLSSHENI FTGIIEIKVHDRQEVKNVINGLKKVEGLQELQQIM >gi|281305124|gb|ADEF01000044.1| GENE 28 38484 - 38834 297 116 aa, chain - ## HITS:1 COG:no KEGG:PRU_0010 NR:ns ## KEGG: PRU_0010 # Name: not_defined # Def: MerR family transcriptional regulator # Organism: P.ruminicola # Pathway: not_defined # 1 115 1 115 115 135 56.0 5e-31 MALNANKSVKLYYSIKEVAQMFGINESTLRYWETEFPNLRPKTVGSNKVRQYTDANIEDI RIIYNLVKVRGFKLSAARKVLSSNRKGVETSSEILDTLLSVRDELQELRKQLDVIV >gi|281305124|gb|ADEF01000044.1| GENE 29 39668 - 39859 140 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPHYLLLRLQRANELITFYPGRMPWAIVLLGLRPAIARHISCCAMTWHPLPFIVGNWHTA KTG >gi|281305124|gb|ADEF01000044.1| GENE 30 39953 - 40351 93 132 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPHCLLLRLQRANKLITSNPGRMPWAIILLGLRPAIARNHDSCNTRYCLYSLDVLPAATE FCEILRHVRVVPCHSVAMMRNITSVSSQQQFSDLHPFKRFQQQCGLNTNRMRKGICLITF HTTLDYEFSSPP >gi|281305124|gb|ADEF01000044.1| GENE 31 41182 - 43803 3056 873 aa, chain + ## HITS:1 COG:VC0545 KEGG:ns NR:ns ## COG: VC0545 COG0013 # Protein_GI_number: 15640567 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Vibrio cholerae # 2 867 3 852 860 638 43.0 0 MMTANEIRESFKKFFESKGHTIVASAPMVIKDDPTLMFTNAGMNQWKDIILGNKQPEPRR RADSQKCLRVSGKHNDLEEVGRDTYHHTMFEMLGNWSFGDYFKEGAIDYAWEYLVGVLHL DPKDLYVTVFEGSPEENIPHDSEAEKYWRKHLPADHIINGNKHDNFWEMGDTGPCGPCSE IHVDSRSDEEKAQLPGRELVNKDHPQVIEIWNIVFMQFNRKADGSLEPLSMNVIDTGMGF ERLVRMLQGKNSNYDTDIFQPFIHEMERLSGKKYGEQEDVDVAMRVVADHLRAVAFSIAD GQLPSNAKAGYVIRRILRRAVRYAYTFLGQREAFVYKLLPVLVDEMGGAYPELVAQRELI GKVMKEEEDSFLRTLEKGINLLSNAMDELKKAGKTQIDGEQAFRLFDTYGFPLDLTELIC REHGFSVDEQQFHAEMQKQKDRARNAAQVENSDWVEIRQGEQQFVGYDYTEYECHILKYR KVTQKKNSFYEVILDFTPFYGEMGGQVGDQGVLVSEHETVDVIDTKRENNQSIHIIKQLP QHPEADFMACVETDKRDACAANHTATHLLDYALKQVLGDHVEQKGSYVSPDTLRFDFSHF QKVTDEEIRQVERLVNDLIRQDIPLDEHRDTPIEEAKEMGAVALFGEKYGDKVRVVRFGP SCEFCGGIHAKSTGRIGLFKIISESSVAAGVRRFEAITGRQCEEAMYAIEDTVKAIRSLF NNAKDLKGVIEKYMDEHATMRKEIEQFQAQAVQRTKDELIKRAETVNGVTVIKAVLPIDG NAAKDLVFKIREAIPSHLLCVIGSTAQQKPLLSVMLSDDMVKEQGLNAGQMVREAAKLIQ GGGGGQPHFASAGGKNVDGISAAVDKVIELAHL >gi|281305124|gb|ADEF01000044.1| GENE 32 44270 - 49273 3580 1667 aa, chain + ## HITS:1 COG:MA0851 KEGG:ns NR:ns ## COG: MA0851 COG3291 # Protein_GI_number: 20089735 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 850 1082 2123 2356 2566 65 28.0 1e-09 MKYQLLLLAFLSSALGTSAQQFEKVDKSKYKDYTPTYAPDPSLMRNISGKAGKADMHTRA TSTSLPAYVNNANAKWFPPIFGQTGGSCGASSRIGYMMTYEWNAFRLSDASKIEHRLPPH FEYPFAYNGLSKDHMAQYIGYPTGDVYGGWDISSIYGAYEADSNDAGWMQGYDSWHNAMF NRITGTANFPKGSNTPEGMEAIKRWLFNHNGDPSWPTITDENGTHIVGGIAGLGCGISGC VMQKVADVDANRKAGVVGKHYIERWRFDTPDHAITLVGYDDRVVFDLDKNGVYGEEKNRL GQDERGAWIFANSWGDWADKGLCYVPYPMAGGVTNSKTDKHILTNEDGSKVEVYTCGGWW PEVYYLRQNYVPQQTMKVTMQYSKRSEISVKVGVSQDPTATKPQKESVFRYINYTGDGDK DPADAETPLLGRWADGKMHHEPMEFGVDLTDLCEGIDFSRPVKYFLTINSKGSATGKGSV KSVSIIDYAMSEKGVEMPICNEDIPIKNGGQTTCVSGVVTQESVNAPYNLAFDDNKQLAW AEPVNGLSKPETYIVYQNGNKITETTSTHYAPTSTDGSFYVKASYKINGKQKLSAASNSA ALPQNADAVYDKDVQRFTSSGGFVVPNVTSKPHQKFTIEYWLKPSSVYNWNQKVGAGWGT FWLHANNNRTLTFGWNTDNGNRSDSEPILQTNKWIHIALVIDGNTMTLYANGERKGQFSS QFHSGMPAISDGLLFGATNNDGLHGCIDDLRIWEVARTAQEIKDNYQTPIANPGSEKGLL AYFKMNTIKKNGRTLLVDAAHGNHAKFLSNGAHNTAQANNETIRKQALPSATIQGPSQVN KGDVVTLSATTSVGVMKRTWTATGATPAQTTAHDASFKFNTAGNQTVTLTTTDINGQTQQ TTHQVNVKAIEPSADFTITNETVKASERVSFLAKNEVSGCTYAWQLDGADIKTSDHRNIS AVFMKAGTHTVTLTVTSAEGKKYTQTRHLNVAASAPKAGYKTSKDDQVVLKNEELTLTDA SKYEPTEFYWSLVSHNQVYNGTGNPYRFKPQRAGVYKLYYTVENAQGNDKLVKDQAVIVC NADAQRGLNFSIVGNKSYKTMTTGQLDNISTDWTIDYWLKPTFASSASNGVYALSSNGTE VASLIAQPKGGATLKVGDQTFQISDDFIISGQWHHYAITANKTTVNLYRDGTLFKSLTLS SGNNTDNIAKVRVGGEAQADGIFDEFRVWGKVLSKTDLRRYCIAPLSGTELTKAVSDNLL KCYYQFNTIEDGTNIPDQSGHGCNATRDNFGPGGDAWVSSRGVFAIDFSPAEGEKINGYK PLDRSSYRIVKVSDEETQSEQDGNGFAELALDADETTFWHSQYAGGEKGFPHSFTIDRAS LDVIHALKITNKRESRYRAVSVTVEQSDDMNQWEMLDNNHHFLDMESPAVNLMKPVTKRY MRLTFNENAWQGSLMTLNTVEFYGTKANDASLEQPVQLIFKSCSDENNNAKQKASNAVDG NENTQWRSKDGTPYPHTIDVQNSSKGRCIETLSLVQAIIGNKKKSRNYSAGKVTICVSDN GKDWTAFEKVRIPYYNKSTIRLKTPIHQPYIRFEFTEAQMKGATSLALKEIKAYGRLSKE TGINGVDQDYNSTDTRIYNLQGQYVGTSIESLPAGIYIRNGKKMIKQ >gi|281305124|gb|ADEF01000044.1| GENE 33 49447 - 50367 766 306 aa, chain + ## HITS:1 COG:no KEGG:DICTH_0289 NR:ns ## KEGG: DICTH_0289 # Name: not_defined # Def: alpha-rhamnosidase # Organism: D.thermophilum # Pathway: not_defined # 40 285 156 406 921 66 23.0 1e-09 MQKSLLIVFLGMCIKVSIAQSFNLQWIACPQADSTSEVWFRQDWKLKDYPTHATMTIACT GKVSAYINERNISTALWFPARSNNDGKPICITLDVTRFLQPGNNVIAIWYAPSWTHIERQ QVAITLHARYANNGYTCLQSDENWLTRPATTSLTLDGGEKDDGYAYGAKWNSDDFDVATW QSATAVEGPSLPYSYYFAGYPAVKVSKIQTPRYFDVVGDSVYYQFDKAFKGQVRVTLRGA KRGQKIQFNGLTYTCNGELDEQAYPRFAIKDVYRVLISGDKDFKPEQIQQVEGLEVVPYF HQSYQY >gi|281305124|gb|ADEF01000044.1| GENE 34 50493 - 51377 583 294 aa, chain + ## HITS:1 COG:PA0248 KEGG:ns NR:ns ## COG: PA0248 COG2207 # Protein_GI_number: 15595445 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 157 293 153 286 288 69 28.0 8e-12 MERNSIAKLTIKRIKEITNISTFIDDDLLLFDRLEDLPFPLEPRKMNCVLVGMCLKGRAQ YTVDTKECVISENDLLILSDGQVVSDYMISHDFKGIAMLASENFMQDISRGVNKISSLFI YTKTHPVLHLEQQNANSFLDIYRMTHKKVIDVNHRFRREIVCSLLGALIYDMGNYIWYNQ QDQTNFKQSRGEKIFSDFIKLVEQNFREIRRVGWYAEQLKITPKYLSETVKKVSRETPNS WIDSYVTTELRVQLKNSAKNIKEIAKDMNFPNQSFLGKYFKDRTGMSPSNYRKS >gi|281305124|gb|ADEF01000044.1| GENE 35 51362 - 51964 418 200 aa, chain - ## HITS:1 COG:no KEGG:PRU_2353 NR:ns ## KEGG: PRU_2353 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 6 200 5 210 210 272 64.0 4e-72 MNHLYPPIIQVGNVLVSPDVFTQKFCCDLEVCHGACCIEGDAGAPVTIDEIASIEEDVDA VWNELSASAQSVIDQQGVAYIDREGDMVTSIVGRKDCVFTCYQEGCCLCVLERAYRKGEI DFCKPISCALYPIREKALGNGLVGLNYHRWKICQCAVEKGKELNLPLYQFLKEPLIRRFG QQWYDELCVVAQQLAHQDFL >gi|281305124|gb|ADEF01000044.1| GENE 36 52241 - 52906 443 221 aa, chain - ## HITS:1 COG:PA0750 KEGG:ns NR:ns ## COG: PA0750 COG0692 # Protein_GI_number: 15595947 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Pseudomonas aeruginosa # 3 221 8 226 231 259 57.0 2e-69 MEVQIEESWKAHLQQEFDKPYFAKLTEFVHAEYSQFACYPPGKLIFNAFNLCPFNQVKVV IIGQDPYHEQGQAHGLSFSVNDGVPFPPSLQNIFKEIQADMGMPIPTTGNLTRWAKQGVM LLNATLTVRAHAAGSHQRRGWETFTDAVIKVLSDHKEHLVFLLWGGYARSKSYLIDKHKH CVLESVHPSPLSANRGGWFGNHHFSRCNEYLIQQGIEPVKW >gi|281305124|gb|ADEF01000044.1| GENE 37 53011 - 54528 1664 505 aa, chain - ## HITS:1 COG:MA4007 KEGG:ns NR:ns ## COG: MA4007 COG0696 # Protein_GI_number: 20092802 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Methanosarcina acetivorans str.C2A # 6 505 15 520 521 477 48.0 1e-134 MAKKALLMILDGWGIGDKGKGDVISNTPTPYLDYLNATCSHSQLQASGENVGLPDGQMGN SEVGHLNIGAGRVVYQDLVKINRACKDGSILQNPEIVSAYTYAQKTGKKLHLMGLTSTGG VHSSLDHLYQLLEISKKYGLKNTYVHCFMDGRDTDPKSGVGFIEALQHVCETNDAHIASI IGRFYAMDRDKRWNRVKEAYDLLVSGVGKKATDMVQAMHESYAEEVTDEFIKPITNATVQ GQIEEGDVVIFFNFRNDRAKELTQVLTQTDMPDEGMHTIKDLQYYTMTPYDANFKNVHVL FPKENVEMTLGEYLSSLGKRQLHTAETEKYAHVTFFFNGGREEPYKGEDRILVNSPKVAT YDLKPEMSAYEVKDKLVDAIGTQQYDFIVVNFANGDMVGHTGVYNAIAKAVWAIDHCVKE VIEAAKANGYEAIIIADHGNADHAINEDGTPNTAHSLNPVPFIYVTDNNSATVKDGRLAD VAPSILHIMGLEQPEAMTGENLITD >gi|281305124|gb|ADEF01000044.1| GENE 38 54835 - 55266 447 143 aa, chain - ## HITS:1 COG:TM0374 KEGG:ns NR:ns ## COG: TM0374 COG0071 # Protein_GI_number: 15643142 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Thermotoga maritima # 2 131 9 135 147 77 37.0 1e-14 MIMLPVRNRNSWLPSVFDDFFDTGLAPRLNSTAPAINVIAHDGEYVVELAAPGLKKDDFI VNIDNDGNLTIKMEKKVENKEEDKKAHYLRREFSYSSFEQTLILPDDVDKEKICAKMSDG VLTVTLPKREEIVQTLGKQITVE >gi|281305124|gb|ADEF01000044.1| GENE 39 56443 - 57894 926 483 aa, chain + ## HITS:1 COG:mll5270 KEGG:ns NR:ns ## COG: mll5270 COG2244 # Protein_GI_number: 13474395 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Mesorhizobium loti # 4 462 75 529 561 143 25.0 9e-34 MTETLKEKTAKGIFWGAMSNITLQLVGVVFGIMLGRILSDEDYGMMAMIAIFQLVAIALQ NSGFTVAITNMKSPTHDDYNAVFWFNILVGGTLYILLFLSAPLIASFYDTPALTSLCRYS FLGILFASFGTAQSAWLFKNLHAKQQAKANIVAVLLSSITGVLMAWGGFRYWSLATQSLV YILLCTLLYWHYSPWRPSVHHISFAPVRRMFKFSFKILLTTLITQVNNNVLNILLGRLYT KHDVGQYNQAYQWDSKGFQLVQSIVNQVAQPVLVELKNEADRQLHAFRKMMRFSAFLSFP LLLGLGLVSREFIVLTITEKWLPSAQLLRLLCVSGAIFPLITLMSNLIISKGKANVYLGC TVALGVLQIVLMLLLWPYGIRNMVIAYVCLNVSWLFVWFYFVRKSTGYTLPQFFKDVLPF AVSASVVMVVTYYATLGITHLLPLLVVRVVMAAVLYYVIMRVAKTEILRECQAAILSKWK KKR >gi|281305124|gb|ADEF01000044.1| GENE 40 57965 - 59791 1502 608 aa, chain + ## HITS:1 COG:mlr5890 KEGG:ns NR:ns ## COG: mlr5890 COG0079 # Protein_GI_number: 13474906 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Mesorhizobium loti # 227 600 63 433 449 183 29.0 1e-45 MQAIILAAGMGRRLGSYTKENTKCMVPVNGVKLIDRVLTQLSQLNLQRVIIVVGYKGQEL IKYLDHRYDDKLKIEFVNNPIYDRTNNIYSLSLVKDQMQEDDTILIESDLIFSDRLFSMI LADERPNIALVAKYETWMDGTMVRIDGDGNIVNFVPKKAFNYQEVDSYYKTVNIYKFSKT FSQTQYVPFLDAYCKALGNNEYYEQVLRVITLLDKTNLKALDIGNEKWYEIDDVQDLDIA ETIFAKDDEMLKRYNYRYGGHWRFPKMLDYCYLVNPYFPCEQMKAEMKANFDTLLTEYPS GMYVNSLLAGKCFGIKQEYMVVGNGAAELIKSLMENVKGNVGMVFPTFEEYPHRLRKEQI VAFVPPLDTLRYTANDLMNFYKDKSIDMLLLINPDNPSGNFIPKADVVRLAAWCKERNIQ LVVDESFVDFSDDFLHNSLLCDETLEAYPNLLVMKSISKSYGVPGLRLGILATSQRETIA RIKKDVSIWNINSFAEFFMQIYNKYQAQYEKACQQFIDERNRFALRLKEIHFLRVLPTQA NYFCCEVKPPYTAAELTKQLLARFDIMIKDCNSKTSLKGLNYIRISIRNQADNDQLITAL LNLQNETI >gi|281305124|gb|ADEF01000044.1| GENE 41 59792 - 60802 779 336 aa, chain + ## HITS:1 COG:no KEGG:PRU_0088 NR:ns ## KEGG: PRU_0088 # Name: not_defined # Def: octopine/opine/tauropine dehydrogenase-like protein # Organism: P.ruminicola # Pathway: not_defined # 1 331 1 331 340 380 53.0 1e-104 MKICICGGGNLGHVVAGFLAAQPTHEVSLLTRHPERWTHHLLIDTPNGEVLKGELCHIST HAKEVIPSAELVLLCLPGYALHDTLEQISKYLSPHIPVGSIVSSTGFFFEALDILPDTTP LFGFQRTPFIARTTQYGHRASLLGYKPQLNLAIERGGEATEALRETLQEMLHTPISLLDN YYEASLTNSNPLLHTARLYELWHSWHKEIVYKEVPLFYTDWTDEAAQLYIQMDEELQTLL SKLKVKQGAIPTVLDYYESTDAHSLSKKLSSIAAFQGIPAPMKAVEGGYQPDFSSRYFTE DFPYGLAIIHRLAHQHGVEVPHIDKVYEWGMRQLSK >gi|281305124|gb|ADEF01000044.1| GENE 42 60813 - 61646 755 277 aa, chain + ## HITS:1 COG:SP1274 KEGG:ns NR:ns ## COG: SP1274 COG3475 # Protein_GI_number: 15901134 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: LPS biosynthesis protein # Organism: Streptococcus pneumoniae TIGR4 # 30 270 14 266 269 112 30.0 7e-25 MNTPLIPHEELRQRYNPDGSLLRRQQMRMLHILVEVDKICQRHNIRYWLSSGTLIGAVRH GGFIPWDDDLDIEMMRSDYERLLEILPHELPEDLALQAHSTDPNYCYHYAKVRDRCSYIE EKPNYDRFFKHRGIYIDIFPLEKQHMWTHKLSELSFGHAYKLMRTYKGSDEECMKKVKRL YAWNVRFIYPLLRWVNRITGAKTITSGLGIPFHNPRYEEDIFPLTTIVFENRPFMAPHDS DRMLRHIYGDYMKLPDLSQLKPHTGSIEIYNNETNKH >gi|281305124|gb|ADEF01000044.1| GENE 43 61653 - 62678 831 341 aa, chain + ## HITS:1 COG:no KEGG:BVU_0889 NR:ns ## KEGG: BVU_0889 # Name: not_defined # Def: hemolysin hemolytic protein # Organism: B.vulgatus # Pathway: not_defined # 3 333 2 330 338 461 65.0 1e-128 MKQPAKTDVAVLILFFNRPKELGNLFEQIKLARPSKLYLYQDGPRNDSDLPRMEACRKLL DDDQIDWKCEVHRNYQEVNRGCDPSEYLSQKWAFSHEDKCIVLEDDNVPALSFFPFCKEL LDRYAHDERIGMIAGMNYDEETQGIPDDYFFTTTFSISGWASWKRVVDKWDATYSFLDDK YNRQQLEALIKERKYQSDFIEFCEYHRSVGKAYYETIFHAAIFFHSQLCIVPRVNMISNA GATEDGVHLSGSNDDLPKAIRGIFTMQRHELSFPLKHPRYIIENVGYKHRMFRIMGWGHP WLKIGRSVEELFINLRKGNFKRIKEAMVNRMRKLCGKSKWD >gi|281305124|gb|ADEF01000044.1| GENE 44 62727 - 65933 2776 1068 aa, chain + ## HITS:1 COG:VCA0045 KEGG:ns NR:ns ## COG: VCA0045 COG0793 # Protein_GI_number: 15600816 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Vibrio cholerae # 697 1057 18 379 394 273 38.0 2e-72 MKKTLIFAALTLSLSVAAQSNPLWMRHTSISPDGQTIAFSYKGDVFTVPASGGQARQLTS NAAYDSYPIWSPDGKKIAFASSREGSLDIYVMDKFGGEPKRLTTRSTNETPIAWRDNEHI LFSAAIMPTAKSIFFASSQFPQVYEVNLKGDRPKLFSVVNMEDLSINQKGEILYHDKKGY EDPFRKHHRSPITRDIWLNQNGNFSKLTTFNGEDRTPRWAPDGTSFYYLSEEDGTFNVYK RGVKSADKTQITHHTKHPVRYLSVAQNGRICYSYDGEIYTQMGSAAPQKVNVSITADRND IDLKRQINSWGATEIALSPNGKEIGFVLHGDVYVTNIEYKTTKQITDTPEQERSIEFSPD GLAIVYASEREGLWQIYQTTMKNKAEKQFAYATDLQEERLIHSAYTSFQPQYSPDGKSIA FFENRGTLKVLDVKSKKVRTVMDGKYVYSYSDGDIWFEWSPDSKWLISNYIGTGGWNNQD IALIDAEGKKPIYNLTQSGYNAGNGKWVLGGKAIIFQSDRAGYRSHGSWGTEDDVYIMFF DLDEYEKFKMTKEEKSLLDEAEKEKKKAEEPKTVDVTVKKKEKKEEPIKLDLDNCRDRVL RLTVNSCRLGDAVLSNDGNALYYQAAFEGGYDLWKHDLQDKSTKIVLKGVGGGGMLADKD FKNLYLCSGGGIKKIDIGSNSSKNVDFEARFNYKPYQEREYMFNHIWQQVKDKFYKVDLH GVDWDGYKKSYARFLPYINNNYDFSEMLSEILGELNASHTGARYFGGGANLSTATLGLFY DQTYDGDGLKVEEVINRGPFSVKKTGVTKGCIIEKIDGEPILKDKDYYYMLDGKSGRNVR VSVYNPTTKKRFDVTVKAISKGYQDELLYRRWVDRNRQLVDSLSHGRLAYVHVKAMDSES FRTVFHELLSDKNRNREAVIVDERHNGGGWLHDDLCTLLSGKQYQSFVPRGQFIGKDPWN KWTKPSCVMVCEDDYSNGHGFPFVYKELGIGKLIGTPVAGTMTAVWWETLIDDTMVFGIP QVGCRDMRGNFGENTQLNPDIEVYNTPEDYINGNDQQLKRAVEEMLKK >gi|281305124|gb|ADEF01000044.1| GENE 45 66088 - 67269 785 393 aa, chain - ## HITS:1 COG:no KEGG:BVU_2037 NR:ns ## KEGG: BVU_2037 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 4 393 1 389 389 242 37.0 2e-62 MVMIKRITILWAILPCVLYSQAQGIDDVLKSIEKNNIELQAAQKDIASEVEEIKQSNTIE GLSVEYSPFMRSGIPGVSSSELIVSQEFDFPTLYGARRLLAKKQHRVLNLEYQTKRRDLL LEAKIKCLDWIQLNQLKNVLADRLEKAQRLLELYQKRFEHGEATILELNKLKMEQMSLHV DIAKNAAARQRVYQELLILNGNQPLLLEHLAYPLVMTKFNADSLRTHLLQTDAEVLAAKG YREAAQQQLNVNKNSWLPRLTIGYRRNTEGDFISNGVQIGFALPLYTNQHKKKAAQAALE GALLRKANVQMKVTNEWRARQNELEQLRTSLSTYDLSFLRQSLQTLRKIVEIGEMSLLDY YTEVDKIYEKWQDYINIEHQFQLVYAELTKNSL >gi|281305124|gb|ADEF01000044.1| GENE 46 67271 - 70378 2237 1035 aa, chain - ## HITS:1 COG:all7618 KEGG:ns NR:ns ## COG: all7618 COG3696 # Protein_GI_number: 17158754 # Func_class: P Inorganic ion transport and metabolism # Function: Putative silver efflux pump # Organism: Nostoc sp. PCC 7120 # 1 1031 1 1032 1058 771 42.0 0 MLDKIIKFSLHNRLLILVGAVVLVLMGLYSVHRTEVDVFPDLNAPTVVVMTEAEGMAAEE VEQLVTFPIETSVNGATGVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLLTVSES LPSTVRRPTLGPQSSILGEVMIVSLTSDSTSMLDLRTLADWTIRPRLLSIGGVAQVAVIG GDQKEYQIQVNPRKMNHYGVNLADVMAATRGMNKNTNGGVLYEFGNEYVIRGMMPTPALE RIGKTVVKKTGDYPVTLSDVAEIKIGSESPKLGVASEKGKPAVLLTVTKQPNTGTIELTE VLDKAIEDLQKDLPANVHVSTDVFRQSSFIQSSIDNVKDSLLEGALFVVIVLFLFLANVR TTIISLVTIPLSLLVSLLVLHQLGESVNTMSLGGMAIAIGSLVDDAIVDVENVWRKLREN HLLPKAERLGILNVVYHASREVRLPILNSTLIIVASFVPLFFLSGMEGRMLIPLGIAFIV ALFASTVVALTLTPVLCSYLLNVHMNQNNVKWKEPKVVDWLKRHYATALSWVLYHKRVVL LSACGVLLATLCIFFSLGHSFLPPFNEGSFTINVSSMPGISLEESNKIGQQAEKILLSIP EIKTVARKTGRAELDEHALGVNMSEIEAPFELTNRSHQALLNDVREKLSTIVGANIEIGQ PITHRIDAMLSGTKASIAIKLFGEDLNKMYMLGGQIKSAIEDVEGIEDLNLEQQVERPEL KIVPRPEMLARYGITEPEFNDYIAVFLKGEQVSQVYEGNKSFNLIVRSDEESRRTMADIR NLMVDTSNGTKIPLSNIADIVSSTGPNTIHRENVARKIVISANANGRDLGSVVNDIQKEI KAKVNLPEGYHIEYGGQFESEKSASKTLLITSLLSIVVIFLLLYMQFKNAVESGVILLNL PFALIGGVLVLWMTSGEVSIPAIIGFISLFGIATRNGMLLITRYNSLREDEGLTVRESVL KGSSDRLNPILMTALTSALALVPLVFRGDLPGNEIQSPMATVILGGLLSSTFLNAFIIPI VYEWICRKETSNEFI >gi|281305124|gb|ADEF01000044.1| GENE 47 70397 - 71533 938 378 aa, chain - ## HITS:1 COG:PA2521 KEGG:ns NR:ns ## COG: PA2521 COG0845 # Protein_GI_number: 15597717 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Pseudomonas aeruginosa # 45 365 146 472 484 77 25.0 5e-14 MYRPFFYKIILGGMFFSACQSNPQQHSNLQTEKAEEASHEHANLIELDQKKAQAAGVVVR EISPAAFHGVLKVSGKVLPASGSEKTVVATVAGIVSMVHPLTEGMSVGKGTSVFRISSDQ LPEGDVAQRARIAYETALADYKRKKDLVADKIVTQKEYLDAKANMERAALAYKALGRSNS SGVAVVAQMSGFIKECLVKQGDYVDVGQPLMTISQNKHLYLRAEVPESSYGMLSQITSAN FKTSYSQQVYQLSSMGGKLLTYGKASSMESAFIPVTFEFDNRNGVVPGAFAEIYLLTTQR PNVLSVPISAITEEQGVYFIYIQEEATHYRKQEVKLGESDGTRVEILSGLKSGEKVVTQG AIHVKLAASTMEIPGHSH >gi|281305124|gb|ADEF01000044.1| GENE 48 71631 - 72071 432 146 aa, chain - ## HITS:1 COG:no KEGG:BF1284 NR:ns ## KEGG: BF1284 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 6 143 3 142 143 141 47.0 8e-33 MKADIDLIIHILNKAGVKPTSNRILVLRTIIEMNRPVSLSDLENNLLTLEKSSIFRVLRL FLRKGVIHSIEDGKGLARYEICTTDNTHVDDDMHVHFYCEVCEKVFCFKALHAPILELPE GFQVHAVNYMLKGLCPDCQAKKDFHR >gi|281305124|gb|ADEF01000044.1| GENE 49 72058 - 72207 62 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSAFIAEKYLEKVRNHVLHVAQRATNSSFTIAGLQRITMFRKNILVLLH >gi|281305124|gb|ADEF01000044.1| GENE 50 72268 - 73344 783 358 aa, chain - ## HITS:1 COG:BB0682 KEGG:ns NR:ns ## COG: BB0682 COG0482 # Protein_GI_number: 15595027 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Borrelia burgdorferi # 10 356 2 350 355 293 41.0 4e-79 MNIDEIKDKRIAVLLSGGVDSSVVVYELVRMGVQPDCFYIKIGPEEQEEWDCTSEEDLEM ATHVAAKYGCKLQVVDCHKEYWNEVTRYTMEKVKAGYTPNPDVMCNRLIKFGAFHEKMGY QYDLIATGHYAQTEIIEGRKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKGEVR KIAEREHLINAKRKDSQGICFLGQINYNEYLRRYIGENPGKVIELETGKQIGEHRGLWFH TIGQRHGLGFGGGPWFVVKKDVANNVLYISKGYDPQTAYQKDFKIHDFHFLTMPVDMHHV TFKIRHTPEFHSGIIEQTAPDSYTVHAETAIHGVAPGQFCVVYDEQHHCCIGSGEITV >gi|281305124|gb|ADEF01000044.1| GENE 51 73761 - 73943 182 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNRQTYYKNGLIFTKQTAFQAETLILRSWKHVLEVLFTCLSRIKACKLQAYLNGLVAKKW >gi|281305124|gb|ADEF01000044.1| GENE 52 74215 - 74658 557 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880952|ref|ZP_06289643.1| ## NR: gi|282880952|ref|ZP_06289643.1| hypothetical protein HMPREF9019_0052 [Prevotella timonensis CRIS 5C-B1] # 7 147 20 160 160 246 100.0 2e-64 MKKLAIMFAAGLMLAACQSNGKKSTAGESQDAALDSATVVNTDTMAYAGEGPAADGTYKY SLKLYGDSITEFAYEQVAVTPKGTETMARTTGIAHLIQHNGKEYVRVQEHKEDSVTFLKL DDTTLRLVSKDFEEAGEGTNTDLKLVQ >gi|281305124|gb|ADEF01000044.1| GENE 53 74830 - 75765 923 311 aa, chain - ## HITS:1 COG:Cgl2775 KEGG:ns NR:ns ## COG: Cgl2775 COG0330 # Protein_GI_number: 19554025 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protease subunits, stomatin/prohibitin homologs # Organism: Corynebacterium glutamicum # 20 311 38 322 325 215 41.0 1e-55 MENKEVNFVGMSINGFVVLPVFFVLLAISIYLFVMGIDTSDALSVTGSVLFVLDLILLAG FVQIEPNEARVMMFFGKYKGTFKKVGFHWVNPFITTKKLSLRARNLNADPIKVNDKVGNP VMIGLVLVWRLRDTYKAIFEIDSQTMAHGMQGEALKNVNSIMRAFENFVMIQSEAALRQV AGQYAYDSNEVDKDEITLRDGDESVNKELETKLAERLQMAGIEVVEARINYLAYAPEIAA VMLRRQQADAVIMAREKIVEGAVSMVKMAVDRLSSDQVVHLDDEKKAAMVSNLMVVLCSD DTVHPVVNTGN >gi|281305124|gb|ADEF01000044.1| GENE 54 76124 - 77056 900 310 aa, chain - ## HITS:1 COG:TM1717 KEGG:ns NR:ns ## COG: TM1717 COG1162 # Protein_GI_number: 15644464 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Thermotoga maritima # 3 298 7 286 295 202 39.0 9e-52 MHGLVVKNTGSWYTVKTDSGQLIDCKLKGNFRLKGIRSTSPVAVGDFVQIVTNAEGTAMI TAIDDRKNYIIRKSPNLSKQSQIIATNLDQAFLLVTIKYPETSTIFIDRFLAGAEAYRIP VVLVFNKTDLLNEEERHYQQMMMNLYETIGYHCVEISAEKGQGMEVIDALLAQKVTLLSG NSGVGKSTLINVLIPHAEQRTAEISDAHGTGIHTTTFSEMIALPHGGYVIDTPGIKGFGT FDIEPEELTSYFKEIFAFSKDCKFNNCTHTHEPGCAVRTAVENHYISESRYQSYLSMLDD KEENKYREPY >gi|281305124|gb|ADEF01000044.1| GENE 55 77151 - 77711 705 186 aa, chain - ## HITS:1 COG:BH2424 KEGG:ns NR:ns ## COG: BH2424 COG0233 # Protein_GI_number: 15614987 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Bacillus halodurans # 5 186 3 185 185 147 50.0 1e-35 MIDVKATLKEAEERMQMAATYLEESLSRVRAGRANVAILDGVMVNSYGSMVPLNQVANVS VPDARTIAIKPWDKKAIKDIEKAIMDSDVGITPENNGEIIRLGIPQPTEERRRDLVKQCN KIGEKAKIEVRNVRSEIKDRLKKAVKDGLSEDAGKDAENELQNVHDKYIKNVDRLLEEKT KEIMTV >gi|281305124|gb|ADEF01000044.1| GENE 56 77482 - 78018 234 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880956|ref|ZP_06289647.1| ## NR: gi|282880956|ref|ZP_06289647.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 89 178 1 90 90 166 100.0 5e-40 MAFLSHGLMAMVRASGTETFATWLSGTMEPYEFTMTPSKIATFARPARTRLKDSSKYVAA ICIRSSASFNVAFTSIIFCIVLVLLFSKMEAVQENSSIKRTFQQPIYAKIVQAETKKSLL ILVRRSLSYAKRIRAERNQACLKLLRRSLFYAKIGIYSELYNCFVEIIMGADKGGAAG >gi|281305124|gb|ADEF01000044.1| GENE 57 78219 - 79031 793 270 aa, chain - ## HITS:1 COG:XF2148 KEGG:ns NR:ns ## COG: XF2148 COG0030 # Protein_GI_number: 15838739 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Xylella fastidiosa 9a5c # 7 256 36 286 290 158 38.0 1e-38 MKLVRPKKNLGQHFLTDLNIAKRIADTVDACPDIPVLEVGPGMGVMTQYLVEKPREIKAV EIDRESVAFLHTHFPKLQGNIIGQDFLRMDLQKVFEGRPFVLTGNYPYDISSQIFFKMLE NKELIPCCTGMIQREVALRIASEPGHKAYGILSVLIQAWYDVEYLFTVDENVFNPPPKVK SAVIRMTRNATTDLGCNEQLFKRLVKAVFNQRRKMLRVSLRQLFTGNNASAEFYAGELMT MRPEQLSIQQFVDLTNRVEVELQRVQASNQ >gi|281305124|gb|ADEF01000044.1| GENE 58 79441 - 80721 1145 426 aa, chain - ## HITS:1 COG:no KEGG:BT_3236 NR:ns ## KEGG: BT_3236 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 293 1 317 418 150 32.0 7e-35 MRKVFNIWFLLVALVAMASCQREMDDLFDKSSSERIDDAMDNSVKILSSASNGWVMEYYG GSQYGGYNVICKFKPNGEVTVASEAGKPDATFTSHYKIEQSQGVILSFDSHNPLIHFYSD PHNPNNIGDDGKGMNGDFEFRVLKAAADSVILVGKKHGARILMTPMAKDMKWDAYLKKIA EVEKAMRFKFYNFVVNKDAKLLSPSYRSFAIPNEVDGNTVDVICNYIVTPKGLKFYKPYT INGKTLTGFKYTNDGKFKFPESVNSEVSLNGIIIPLSQQVVSLSWHMKFSTMGKVGRQFW NKMSGIQEQLGEDLKSTALGKSNGKFGFVFISGKYQGCMYMDYKIIDDTHIQLWGTGKGD GNGGWYAKNALFYNYVAPFGWGDVKRTFKIEGDDLQYTTELILTDVDNPDNVIHLYSSKI SNPLDH >gi|281305124|gb|ADEF01000044.1| GENE 59 80731 - 82089 1272 452 aa, chain - ## HITS:1 COG:no KEGG:BT_3242 NR:ns ## KEGG: BT_3242 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 251 1 251 304 194 42.0 5e-48 MKYIKILMFAGILSAASACTTDEINSDSIFKNKETVQTDFDKWLTKNFTDPYNVQFNYRY IDKLSDNRYNVVPADEEKSKVIAQLVKHVWLDAYKEVAGESFMKQNCFRVMQLIGSPEYD GQNKIVLGTAEGGLKILLFRINELDPTNIYVNQDNPYANKRSKPLDLNHWYFHTMHHEFS HILHQKKSYSTEYRTISAGKYHAADWVNVKDEDAAADGFVTGYGSSEPNEDFAELYSTYV TYTDEAWQNILDHGVVVKKDASGAVIYARDKNGDYVYQKDAKGNRILETDANGDLISVTD ANGNVVYATDKDGKYEFFKDEKGNRIPMYKIHQKLGVHYTMTDKGLTPYFIFKGNAYPLT VAAGEPVYQRTADGEIVYDKDGNPQPEYFRVPQFEYLKQPEVDTFGRDAILKKLAIMKSY FQESWGIDLDKLRSVVLRRSKEASTLDLKTLK >gi|281305124|gb|ADEF01000044.1| GENE 60 82097 - 83686 1271 529 aa, chain - ## HITS:1 COG:no KEGG:BT_3238 NR:ns ## KEGG: BT_3238 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 522 1 517 519 319 41.0 2e-85 MKKISFLLCIALVTLSLTTACDDYLDTLPDDRAEVDNLDKAASLLVTAYSTQSPNFVMEM SSDNVLDNGRLYNAQIIQEEAYRWQDVTVTYNDSPRSVWNNAYVAIGTANEVLASLEKLP DSEKLQAIKAEALLCRAFAMFRLSNMFCMAYDPTKADKYLGLPYPKEPGVTVPTRGTLKQ LYDNINADIEAALPKVSDAHLKVPKYHFNTAAAYAFAARFNLFYHNYDKAIAYADKALGV APSFRAVDTYKSLGGVEEIGNAYVRSGDKANLLLMTAFSSSGRAMWSSRFIRFNHGLPIV SNETFWAKMPWGSSSDDNTLYESHLLYGSSQQVNYPKMQEMFEVTDKVNQTGLAHTIDAV FTTEETLLVRAEAYAMKKNFAGAIADINTWITAHCAPQTKKAIRPVLTEKSINDFWGDNK VTPVVPDTIKTDRDRGVKKPLHPQGFKVEKGTQTNLIYMILQMRRLETWQQGQRFQDIKR YGLVICHNIDGENPLIFKSGDLRGAIQLPADVISAGLEPNPRENTNEKK >gi|281305124|gb|ADEF01000044.1| GENE 61 83707 - 87018 3216 1103 aa, chain - ## HITS:1 COG:no KEGG:BT_3239 NR:ns ## KEGG: BT_3239 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 51 1103 2 1059 1059 1336 64.0 0 MKQRLTMLLVSLFLCVGLANAQTQINGTVTSADDGQPVIGASVMITGTKTGVVTNVDGKF SLTSNKKNPMITVSYIGMKSQTLHGTQNMRIVLHSDAQKVDEVVVTGMQKMDKRLFTGAA TKVDAEKAKLDGVADISRSLEGRVAGVSVQNVSGTFGTAPKIRVRGATSIYGSSKPLWVV DGVIMEDVTEVDADQLSSGDAATLISSAIAGLNSDDIESFQILKDGSATSIYGARAMAGV IVVTTKKGKVGTTRINYTGEFTSRLKPSYSQFNIMNSQEQMGIYREMEANGLISFARTYR ASSSGVYGKMYQLMNTYDSTTGKFLLPHTQKGMNDYLMKAEMRNTNWFNELFSSAISMNH SVSVSSGTEKAQYYASFSIMDDPGWTEQSKVQRYTASTNALFNLSKKVSLNLISNAAYRK QKSPGALNQHVDAVTGEVSREFDINPYSYAINTSRALDPNEYYTTNYAPFNIHNELANNF MDFDVIDMKIQGELKYKPITKVELAVLGAYKFSTTTQANQIRENSNMAMAFRAMDDATMR DNNPRLYKDPDKPNSLPFSVLPNGGFYRETKYKMNSWDFRATASYNDVYANDHIVNLFGG MEVNNTDRSRSYFNGVGMQYDMGYLGAYDYNYFKQASEENDVYYSLGNGYNREVAFFATG TYSYKGRYTINGTTRYEGSNRLGKVRSARWLPTWNVSGAWNAHEEAWFGDAFKNTLTHAT LKASYSLTGDKPATINAQPIIESFNPWRPFATDKESGLEMYDFANPDLTYEKKHELNLGI DLGFLNNRLNVTFDWYTRNNYDLIGPRTTNGTKGTITEYANVASMKSNGEEFAITSKNIV TKDFQWTTDFIFSHVKTEVTDLDNRKRFIDMVTGSGFTMKGYPYRSLFSIDFQGLNASGV PTFLNQDGKLTTSDFNFQSRVLDYLKYEGPTDPTVTGSFGNVFSYKGFHLNVFATYAFGN KVRLDPAFSSYYSDLDAMPKEFKNRWTVAGDEAKTNVPAIADLRTMQGDTRLGYAYNAYN RSTARVAKGDFIRMKEISLAYDFPRHLLTPLHLNTLNLKLQATNLFLLYADKNLNGQDPE FFNVGGVAVPMARQLTLTVRVGL >gi|281305124|gb|ADEF01000044.1| GENE 62 88027 - 88875 749 282 aa, chain - ## HITS:1 COG:no KEGG:PRU_2086 NR:ns ## KEGG: PRU_2086 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 282 1 231 232 172 39.0 1e-41 MKKNLLISLAILIVCSGCGTYAGSGAYAGSSLGSILGSAIGGISGGPRGSDLGTIIGMAG GAVVGGAIGANADKKREADLDQYQRDKEIRAQKRAQRQQIKQQKQENMYDYQREGWDASG YDETNSGDDRLLDFERQGDEDSLMIQYPTKKTPATSSVERLAKGLTYAPTMEIRNARLID QNQDGAISRGEVCRVVFEVYNQGTQTLYNVEPIVLETTNNKHLTISPSVRVEQIEPGTGI RYTAMVKADNRIKSGRAKICATVVQGGRTISKVCEFDVITKK >gi|281305124|gb|ADEF01000044.1| GENE 63 89060 - 89254 280 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282880963|ref|ZP_06289654.1| ## NR: gi|282880963|ref|ZP_06289654.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 64 1 64 64 129 100.0 6e-29 MELIVFLVFLAIALLGWGCGALHDKVFNYQPLPEEHVDDSSAAHEELSLRDILKTNSIKG YQAI >gi|281305124|gb|ADEF01000044.1| GENE 64 89473 - 90615 1133 380 aa, chain - ## HITS:1 COG:no KEGG:BT_4407 NR:ns ## KEGG: BT_4407 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 24 352 23 347 391 219 40.0 1e-55 MKNKHICRSLLMGGLALLLGACNNESESDLLAEKVYFESSEYQVTMKEEKDVMDVNITSR LSNLLSSDVNVSYEVAEESLVKEYNAKHGTGYLPFNAQNAKINTPQAVIEAGATHAKPVV LTLSGLNSLEAGKSYILPVRVKSSSVPTVAGEDIEYVILAKPILINKVGTFTNHYISVKF PAGTFFKSFTYEALVYSTGWGSNNTIMGCEGIMILRVGDEGGGISRGILQIAGNQHYESP DKLPANKWCHVAITYDQPSGKTVLYLNGTKWAESTWNIAGFDPNKDVGFNIGKLAGFPWG ERPFRGYMSELRVWSVARTDKQIKQFMLGVDPKSDGLELYYKLDGSEKVEGDLIKDAAKN LDGKTNGIDIAPLNEPISIK >gi|281305124|gb|ADEF01000044.1| GENE 65 90646 - 91764 1308 372 aa, chain - ## HITS:1 COG:no KEGG:BT_4406 NR:ns ## KEGG: BT_4406 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 9 372 11 383 388 290 44.0 8e-77 MKRFKYHQLFLALAIGMFMTSCSDMVEPEAKEFDHVGGYNTMNNAKSEQYYADLRAYKKT ANNYGRPVAFGWYSNWSPAGTYRRGYLSSMPDSMDIVSMWSGAPNRFEITPAQKADKEFV QKVKGTKLLEVTLLSYIGKGRTPDYVYHEVEKKAEQEGWSKDEERLNVAKKQARWKFWGY NGKRGSESHKQALAKFAKALCDSLVANDWDGYDIDWEIGSGVFDMDGTLETNEDLIYLIK EMNKYIGPKSDPEGKGHKLICIDGQFYGLTKALDGYVDYWIAQSYGWTPSLDYYDFDTKK LIITENFESSFSNGGKLLKQAALMPTNGCKGGVGAYRFDNDYDNTPNYKWMRQAIQINQK VYNEWKANQKKK >gi|281305124|gb|ADEF01000044.1| GENE 66 91786 - 93417 1503 543 aa, chain - ## HITS:1 COG:no KEGG:BT_4405 NR:ns ## KEGG: BT_4405 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 543 1 540 542 549 53.0 1e-155 MKFLRYKQYMIGLLALSLFASCDFEKINTNEFEMFPEEGKMDGISVGGPITALQKCVVPV GTQDDGTNVANEYQVAYHLAADCWSGYFAQNNNWNSGRNNLTYFLMDGWVSASYTSAYTK VIPLWQDIKIKTEKDFPEAYALAQILKVSTWHKATDMFGPIPYKEAGKGLISVPYDSQAD VYKCMFEDLTNAIGVLTNALEHGTSKLLPNADAVYGGNVKKWIVYANSLMLRLAMRVYYA DEAMSKKYVLQAVNNPYGVMQSKDDEAKMEKGAGLTFINNIEILSNQYNECRMGSSMQAY LGGYEDPRLPKYFTESEAYYAQELGQYGKYLAVPTGNITEQNDVYKMASRPNVTKTTATY WMRASEVYFLLAEAALHGMSVNGSAEDLYRKGIAMSFEENGIPSNEVDNYMNSGRTPMEY ELSMWYPNVNVSEPSVTNATVKWGGNAEEKLEKIMIQKWIALYPNGQEAWSEYRRTGYPK LHKVMANYSNGEVDTNIGIRRMRYPANRATSDEDKQNLDKARQMLRDGQDKAGTRLWWDN KNK >gi|281305124|gb|ADEF01000044.1| GENE 67 93424 - 96717 3143 1097 aa, chain - ## HITS:1 COG:no KEGG:BT_4404 NR:ns ## KEGG: BT_4404 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 7 1097 19 1106 1106 1362 63.0 0 MMPWNKLFLVSALLLISLAGFSQNQVIKLQKREATLKTMITAIEKQTNKSVDYGQNVMNL KKVVKVSATQMKLSDLLRELFMGTNIEYTITDRHILISQKNKPQTQNTLQSGATIRVNGQ VTDENGESLPGVTVRVKGSKTATATDIDGNYSLNVRSNDILEFSYVGFATREFKASDVTS TTVLSESSKQLGEVVVTALGIKREEKALSYNVQQVKSEELTRNKDANFVNSLSGKVAGVS ITKSASGVGGATRVIMRGAKSIEGSNNVLYVIDGIPLFNFNGGSDSGVLGEGRVSSEGIA DFNPEDIESINVLAGPSAAALYGSNAANGAILITTKKGKEGKMEISFSSASDFSSPLLMP KFQNTYGNKAGSYESWGEKLATPSSYDPAKDFFRTGTNFINSLTINTGNEYNQTFASVAS TNSKGIVPNNTYDRLNFTVRNSSKLFGGKVQLDLGASYIKQKDNNMVSQGEYWNPIVAAY LFPRGESFDAIKTFERYDNTRNFPLQYWPILDGKFANQNPYWTAYRNLAPDDKDRYMFNA GLTYHVLDWLDLAGRVRFDRTFMTSERKIYASSYDVFAKSKGAYDYYNYKDHQTYVDFIA SINKRFGDFSLASNIGYSYSDYGSLTRGYGGNLTLVPNKFSLTNIDPTDSKIREAGGDSK VRNVAAFASAELGYKSMLYLTLTGRNDWNSRLVNSSEESFFYPSVGLSGIISEMVKLPKA ISYLKVRGSFTEVGSPVSRSGMTPGTITTPILGGSLKSTDIYPFTDYKAERTKSYELGLT ARLFKKLSFDFTWYKSNTYNQTFIGELPESSGYKAVYLQAGNVENRGVEMTLGYHDNFGE LGWNSSLTYSHNNNEIIEMVKDYTHPMSPKPINIPQVSKDNGRVILKVGGSINDIYANKF LAKDNQGYINVTSSGGFNVENVDPVYLGKTTPDFTMGWNNSFSYKGFGLSFLINARVGGV VTSSTQALLDKFGVSQASADARDAGGVLIPEQGVFDAKNYYNLIGTGETALAGYYTYSAT NVRLQELTFSYKFNSRWFNNVVKDLTLSFVANNPWMIYCKAPFDPEVTPSTGTYGQGNDY FMQPSLKSYGFSVKFKF >gi|281305124|gb|ADEF01000044.1| GENE 68 96871 - 97896 603 341 aa, chain - ## HITS:1 COG:RSc2919 KEGG:ns NR:ns ## COG: RSc2919 COG3712 # Protein_GI_number: 17547638 # Func_class: P Inorganic ion transport and metabolism; T Signal transduction mechanisms # Function: Fe2+-dicitrate sensor, membrane component # Organism: Ralstonia solanacearum # 120 275 66 215 274 79 32.0 1e-14 MNQQTAYKIMRFFVDGLIPARYHHRIIWWLSDSKDSEAKEEAMKQIWNETSSRMDSRSLN QSFDRFNRQRSVSTVHPVATNRLGRLLKYAAILTVPFLLSLGVWWVTSYQNTKNMALTDF YVSQGRIGTLTLSDGTQVKLNSGSTLSYPQHFSTFAHSREVYLDGEAFFKVTHQSKQPFI VHIGNLKVKVLGTQFNIKAYPAEENITTTLAQGKVLVYENKQAMTILPDEQVVYNRVNSM MRKQRVENYDYSQWMHGRLYFDQAPLKTIIADLQRRYNIRMNIASDVDLNQKYTMAFRED ETIDDVMHVLCKISDHLHFTKQNNIITIYTKKGGRPADIHK >gi|281305124|gb|ADEF01000044.1| GENE 69 98612 - 99274 450 220 aa, chain - ## HITS:1 COG:no KEGG:alr3407 NR:ns ## KEGG: alr3407 # Name: not_defined # Def: hypothetical protein # Organism: Anabaena # Pathway: not_defined # 2 217 3 196 201 126 35.0 6e-28 MRSRNSLMRERREAFRDARLIVIASEGKDTERIYFKALAKEYTNLRVHVHILERSENEQN NSSPEHVLKQLNDYKSKYDLEADDELWLVVDKDRWTEAMLSHVATECSQEVAMHMALSNP CFELWLLLHMEDAASLSPEEQEQWMKNRRKSKNADPYLKVRLRQKMGSYHESSYDALTLI AHIEDAIERARALDKNPTDRWPQTLGTRVYLLAKSVINRN >gi|281305124|gb|ADEF01000044.1| GENE 70 99264 - 100601 850 445 aa, chain - ## HITS:1 COG:alr3406 KEGG:ns NR:ns ## COG: alr3406 COG1106 # Protein_GI_number: 17230898 # Func_class: R General function prediction only # Function: Predicted ATPases # Organism: Nostoc sp. PCC 7120 # 1 443 1 455 463 196 32.0 9e-50 MLLSAKFENIYSFNEETRILFTASKSDQLPLQVSRAEKRDDISVLRMGLIYGANASGKSN IIKCLAIIKEFALSGWNTLKYNYFKMTDEPKECSSIELEFKVDSQFFAYGVAFSKGGLLE EWLYKTGSRNDVMIFERKRNGDSWDNTIAPQFLKDENGQFLKFLIDGTPTKGTFLSEYIK RNGKGIDAIKSARKWFENLNIIFPNTHRTDFPFRVVNDTQFRTVMRELLNYFGTGISDLR RVESKPEELGIPDEIRQKIEESLEGKDSETGVVIHNENRFIFAEKDKSKNLKWHELKTIH KKEGSNSYYIFEMFEESDGTSRLFDFIPMLIDMRANDAVYVIDEVDRSLHPMLTLKLLEM YNSLLRSDSQMQLICTTHESNLLSTAPIRQDEVWFVEKDKKGASHLSSLCEYKPRENVQK GYLNGRYGAIPFFGELNNIHWDDAK >gi|281305124|gb|ADEF01000044.1| GENE 71 100838 - 101032 101 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880971|ref|ZP_06289662.1| ## NR: gi|282880971|ref|ZP_06289662.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 64 1 64 64 123 100.0 3e-27 MRKNQHNVPAGDKWGIKGDGNSRLTSTFDRQSDAIAVARQFPKISIPSYLFTVVMDKFRD SERG >gi|281305124|gb|ADEF01000044.1| GENE 72 101010 - 101567 300 185 aa, chain - ## HITS:1 COG:BS_sigW KEGG:ns NR:ns ## COG: BS_sigW COG1595 # Protein_GI_number: 16077241 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 20 176 19 184 187 71 29.0 7e-13 MSNRKHSFSRTSHHTENDYSFDVIFKLYYPKVKNFVYGFVGVESEAEDIAQDIFLKLWMK RNSIQIMTNFEAYLYTMARNCTLNALKSSSIRHKLQSLTDADVVADTGVEDIIYSEELHE LINRVTSQMPDQRRRIFTMSRLDGMSNEEIGHRLNISKRTVETHISQALAQIRRLLVCFI LFHYL >gi|281305124|gb|ADEF01000044.1| GENE 73 101759 - 102307 566 182 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|237717427|ref|ZP_04547908.1| 50S ribosomal protein L17 [Bacteroides sp. D1] # 1 172 1 167 167 222 67 6e-57 MRHNKKFNHLGRTASHRNAMLANMACSLIMHKRITTTLAKAKALKKYVEPLITRSKDDTT NSRRVVFRYLQDKVAVSELYKTVAPKVGDRPGGYTRVIKLGTRQGDAAQIAFIELVDFDE NMAKTEKTAKKTRRSRRSTGKKDETAKVENSVETADATEAVSAEEAPKEVSEEKAQDEKA AE >gi|281305124|gb|ADEF01000044.1| GENE 74 102442 - 103434 1158 330 aa, chain - ## HITS:1 COG:SMc01285 KEGG:ns NR:ns ## COG: SMc01285 COG0202 # Protein_GI_number: 15965133 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Sinorhizobium meliloti # 8 325 11 320 336 234 39.0 2e-61 MAILAFQKPEKVVMLEADDKFGKFEFRPLEPGFGITIGNSLRRILLSSLEGYAINTMRIA GVEHEFSSVPGVKEDVTNIILNLKQVRFKQVVEEFENEKVSITVENSTEFKAGDIGKYLT GFEVLNPDLVICHLDAKASMQIDLTINQGRGYVPADENRQFCTDVNVLPIDSIYTPIRNV KYTVEPYRVEQKTDYDKLVIEVTTDGSISPKDALKEAAKILIYHFMLFSDEKITLENPDQ DTNQEFDEEVLHMRQLLKTKLVDMNLSVRALNCLKAADVETLGDLVQYNKTDLLKFRNFG KKSLSELDDLLESLNLSFGTDISKYKLDKE >gi|281305124|gb|ADEF01000044.1| GENE 75 103447 - 104052 913 201 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003363|ref|YP_001298107.1| 30S ribosomal protein S4 [Bacteroides vulgatus ATCC 8482] # 1 201 1 201 201 356 85 3e-97 MARYIGPKSKIARRFGEPIFGADKVLSKRNFPPGQHGNNRRRKMSEYGAMLAEKQKAKYT YGVLERQFRNMFEKAAKADGITGEVLLQNLESRLDNIVFRLGIAPTRAAARQMVSHKHIV VDGKVVNIPSYAVKPGQIVGVREKAKSLEVIEESLAGFNHSKYPWIEWDESSKSGKFLHQ PERADIPENIKEQLIVELYSK >gi|281305124|gb|ADEF01000044.1| GENE 76 104119 - 104508 626 129 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003364|ref|YP_001298108.1| 30S ribosomal protein S11 [Bacteroides vulgatus ATCC 8482] # 1 129 1 129 129 245 91 6e-64 MAKKTTASKKRNVRVDAIGQLHIHSSFNNIIVSLANSEGQIISWSSAGKMGFRGSKKNTP YAAQMAGEDCAKIAYDLGLRKVKAYVKGPGNGRESAIRAVHGAGIEVTEIIDVTPLPHNG CRPPKRRKV >gi|281305124|gb|ADEF01000044.1| GENE 77 104587 - 104967 603 126 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003365|ref|YP_001298109.1| 30S ribosomal protein S13 [Bacteroides vulgatus ATCC 8482] # 1 126 1 126 126 236 92 3e-61 MAIRIVGVDLPQNKRGEIALTYIYGIGRSSSAKILDKAGVDRDLKVSEWTDDQAASIREI IGAEFKVEGDLRSEVQMNIKRLMDIGCYRGVRHRNGLPVRGQSTKNNARTRKGKKKTVAN KKKATK >gi|281305124|gb|ADEF01000044.1| GENE 78 105049 - 105165 178 38 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229496182|ref|ZP_04389902.1| ribosomal protein L36 [Porphyromonas endodontalis ATCC 35406] # 1 38 1 38 38 73 89 6e-12 MKTRASLKKRTPDCKIVRRKGRLFVINKKNPKFKLRQG >gi|281305124|gb|ADEF01000044.1| GENE 79 105178 - 105396 237 72 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 95 61 8e-19 MAKQSAIEQDGTIVESLSNAMFRVELENGVEIIAHISGKMRMHYIKILPGDKVKVEMSPY DLTKGRIVFRYK >gi|281305124|gb|ADEF01000044.1| GENE 80 105623 - 106960 883 445 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 13 439 19 444 447 344 42 1e-93 MKKFIETLKNCWKIEDLRQRLLITLLFTAIYRFGSFVVLPGINPASLGQLQKQTEGGLMS LLDMFSGGAFSNASIFALGIMPYISASIVMQLLAVAVPYFQKMQREGESGRKKISMYTRY LTVFILLLQAPSYLMNLKYMASQALATGISWTVFMIPATIILAAGSMFILWLGERITDKG IGNGVSLIIMIGIIARLPQAFAQELGSRLQAISGGGLVMFIVEILILFAVVCAAILLVQG TRKVPVQYAKRLVGNKQYGGARQYIPLKLFAANVMPIIFAQALMFIPLAIVQYQSDNASP ILRSLMDTHSLLYNTIYVILIIAFTYFYTAITLNPTQMAEDMKRNNGFIPGIRPGKETAD YIDGIMSRLTLPGSLFIAFIAVMPALAHLLNVQQGFAQFFGGTSLLILVGVVIDTLQQIE SHLLMRHYDGLLNSGHTRGGNVSAY >gi|281305124|gb|ADEF01000044.1| GENE 81 106964 - 107410 546 148 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003368|ref|YP_001298112.1| 50S ribosomal protein L15 [Bacteroides vulgatus ATCC 8482] # 1 144 1 144 148 214 72 1e-54 MKLNSLKPAEGSTHSRRRIGRGPGSGLGGTSTRGHKGAKSRSGYKKKVGFEGGQMPLQRR VPKGGFKNINRKEYFAVNLGTLQALAEDKNLTKIGIAELVAAGLTNGKKLVKILGTGELK AKIDVEANAFSKTAEEAIKAVGGNTTII >gi|281305124|gb|ADEF01000044.1| GENE 82 107434 - 107610 230 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167933113|ref|ZP_02520200.1| 50S ribosomal protein L30 [candidate division TM7 single-cell isolate TM7b] # 1 58 1 58 58 93 81 5e-18 MATIKVKQIKSKIGAPIDQKRTLSCLGLRKISQIVEVDDTPSIRGMIRKVHHLVTVVE >gi|281305124|gb|ADEF01000044.1| GENE 83 107623 - 108135 738 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167933112|ref|ZP_02520199.1| 30S ribosomal protein S5 [candidate division TM7 single-cell isolate TM7b] # 1 170 1 170 170 288 85 6e-77 MAMNKVKINSDVELKDRLVAINRVTKVTKGGRTFTFAAIVVVGDGNGVIGYGLGKAGEVT AAIAKGTEAAKKNLVKVPVLKGTIPHEIEARYSGAQVFLRPAAAGTGLVAGGAMRAVLDS AGITDVLAKSKGSSNPHNLVKATILALSQIRDAYTIAGIRGVDMNKVFNG >gi|281305124|gb|ADEF01000044.1| GENE 84 108142 - 108486 451 114 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167933111|ref|ZP_02520198.1| 50S ribosomal protein L18 [candidate division TM7 single-cell isolate TM7b] # 1 114 1 114 114 178 77 1e-43 MTTKKVERRIKIKFRIRKNVNGTAERPRLSVFRSNKQIYAQVINDITGTTIASASSLGLE KLPKSEQAQKVGELIAENAKSAGVTTVVFDRNGYLYHGRVKELADAARKGGLNF >gi|281305124|gb|ADEF01000044.1| GENE 85 108505 - 109077 802 190 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167933110|ref|ZP_02520197.1| 50S ribosomal protein L6 [candidate division TM7 single-cell isolate TM7b] # 1 190 1 188 188 313 80 2e-84 MSRIGKLPISIPSGVTVNFDEKTNIIQVKGPKGELTQKIDPSIKVIQENDTLSFEVDEKS PVDYKQKQAYHGLYRSLVNNMVVGVSEGYSKTLELIGVGFRVSNQGNLVEFSLGYTHPIF IQLPKEVKVETKSERNQNPLITLESCDKQLLGLICAKIRSFRMPEPYKGKGILFQGEVIR RKSGKTAAAK >gi|281305124|gb|ADEF01000044.1| GENE 86 109092 - 109487 569 131 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|53715452|ref|YP_101444.1| 30S ribosomal protein S8 [Bacteroides fragilis YCH46] # 1 131 1 131 131 223 83 3e-57 MTDPIADYLTRLRNAIMAHHRVVNIPASNLKKEITKILFEKGYILNYKFIEDGPQGTIKV ALKYDPTTKQSAIKHLKRVSTPGLRQYTGYKDMPRVINGLGIAILSTSQGVMTDKEATAQ KIGGEVLCFVY >gi|281305124|gb|ADEF01000044.1| GENE 87 109580 - 109882 438 100 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003374|ref|YP_001298118.1| 30S ribosomal protein S14 [Bacteroides vulgatus ATCC 8482] # 1 100 1 99 99 173 86 4e-42 MAKESMKAREVKRAKLVARYAEKRAALKDIIAKTDDPAEAYEAARKLQSIPKNANPIRLH NRCKVTGRPKGYMRQFGLSRIQFREMASEGLIPGVKKASW >gi|281305124|gb|ADEF01000044.1| GENE 88 109888 - 110442 827 184 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167933171|ref|ZP_02520258.1| 50S ribosomal protein L5 [candidate division TM7 single-cell isolate TM7b] # 1 184 1 184 184 323 85 3e-87 MDTAQFKKAYKEKIAPALKEQFNYSSSMEIPVLKKIVINQGLGDATEDKKIIDVAVNEIS TITGQKAVATYSKKDVANFKLRKKMPIGVMVTLRRERMYEFLEKLVRVALPRIRDFKGIA SKFDGRGNYTLGIEEQIIFPEINIDSIDRIQGMNITFVTSAKTDEEGYALLKGFGLPFKN AKND >gi|281305124|gb|ADEF01000044.1| GENE 89 110442 - 110759 394 105 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167933170|ref|ZP_02520257.1| 50S ribosomal protein L24 [candidate division TM7 single-cell isolate TM7b] # 1 105 1 105 105 156 71 5e-37 MSKLHIKKNDTVIVLTGQDKGKTGKVLKVLVADERAIVEGVNIVTKSAKPSAKNPQGGIV KQEAPIHISNLSLIDPKSGKATRVSVRRDGKNVVRIAKKSGEEIK >gi|281305124|gb|ADEF01000044.1| GENE 90 110779 - 111144 563 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29348126|ref|NP_811629.1| 50S ribosomal protein L14 [Bacteroides thetaiotaomicron VPI-5482] # 1 121 1 121 121 221 92 1e-56 MIQAESKLTVCDNSGAREALCIRVLGGTGRRYASVGDVIVVSVKNVIPSSDLKKGAVSKA LVVRTKKEIRRADGSYIRFDDNACVLLNNAGEIRGSRIFGPVARELRSVNMKVVSLAPEV L >gi|281305124|gb|ADEF01000044.1| GENE 91 111147 - 111413 378 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212695296|ref|ZP_03303424.1| hypothetical protein BACDOR_04836 [Bacteroides dorei DSM 17855] # 1 88 1 88 88 150 80 4e-35 MVQMETRNLRKVRQGVVLSNNMDKTIVIASKFKEKHPIYGKFVQKTKKYHVHDEKNEANV GDTVLIMETRPLSRTKRWRLVQIVEKAK >gi|281305124|gb|ADEF01000044.1| GENE 92 111416 - 111610 201 64 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003379|ref|YP_001298123.1| 50S ribosomal protein L29 [Bacteroides vulgatus ATCC 8482] # 1 64 1 64 64 82 59 1e-14 MKMTELKALADKDLREKLENAVEAYNQLKLNHSVSPLENPSQIKIARRDIARLKTELHQR ELNK >gi|281305124|gb|ADEF01000044.1| GENE 93 111614 - 112042 574 142 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|53715459|ref|YP_101451.1| 50S ribosomal protein L16 [Bacteroides fragilis YCH46] # 1 139 1 138 144 225 78 7e-58 MLQPKRVKYRRPQDGRGNKGNAHRGTQLVFGSFGIKTLEPKWIDSRQIEAARVAVNRYMQ REGQVWIRIFPDKPITRKPADVRMGKGKGDPMGWVAPVTPGRILFEVEGVSLDVAKEALR LAAQKLPVKTKFVIRRDYDKNA >gi|281305124|gb|ADEF01000044.1| GENE 94 112057 - 112785 1045 242 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|160883058|ref|ZP_02064061.1| hypothetical protein BACOVA_01021 [Bacteroides ovatus ATCC 8483] # 1 242 1 243 243 407 81 1e-112 MGQKVNPISNRLGIIRGWDSNWFGGKDFGDNLVEDRKIRKYLNERLAKASLSRIIIERTL KLVTITICTARPGIVIGKGGQDVDKLKEELKNLFHKDIQINIFEVKKPELDAIIVGNNIA RQVEGKIAYRRAIKMAIQNTMRAGAEGIKIQITGRLNGAEMARKEMYKEGRTPLHTFRAD IDYCQTEALTKVGLLGIKVWICRGEIYGKQELTPNFSQEKANNSRSNSGRNGRGNRRRNN NR >gi|281305124|gb|ADEF01000044.1| GENE 95 112794 - 113198 533 134 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|53715461|ref|YP_101453.1| 50S ribosomal protein L22 [Bacteroides fragilis YCH46] # 1 133 1 133 136 209 75 4e-53 MGARKHIAAEKLKEARKNLYFAKLKGVPSSPRKMRYVVDMIRGLEVNRALGVLRFSKKQA AQDVEKLLRSAVANWEAKNDRKAEDGELYISRVFVDEGVTMKRMRPAPQGRGYRIRKRSN HVTLFVDAKTNDEK >gi|281305124|gb|ADEF01000044.1| GENE 96 113232 - 113498 449 88 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167933129|ref|ZP_02520216.1| 30S ribosomal protein S19 [candidate division TM7 single-cell isolate TM7b] # 1 88 1 88 88 177 95 2e-43 MSRSLKKGPYINVALEKKILAMNESGKKSVVKTWARASMISPEFVGHTVAVHNGNKFIPV YVTENMVGHKLGEFSPTRRFGGHAGNRK >gi|281305124|gb|ADEF01000044.1| GENE 97 113520 - 114344 1284 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212695302|ref|ZP_03303430.1| hypothetical protein BACDOR_04842 [Bacteroides dorei DSM 17855] # 1 271 1 271 273 499 89 1e-140 MAVRKLKPVTPGQRHKIIGTFEDITASVPEKSLVFGKRSSGGRNNTGKMTVRYIGGGHRR KYRLIDFKREKDGVPAVVKTIEYDPNRSARIALLYYADGEKRYIIAPNGLQVGATLMSGA DAAPEVGNALPLAKIPVGTVIHNIELRPGQGALLVRSAGNFAQLTSREGSYCVIKLPSGE TRQILSTCKATVGSVGNSDHALEQSGKAGRSRWLGRRPHNRGVVMNPVDHPMGGGEGRQS GGHPRSRKGLYAKGLKTRAPKKHSNKYIIERASK >gi|281305124|gb|ADEF01000044.1| GENE 98 114352 - 114696 360 114 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29348134|ref|NP_811637.1| 50S ribosomal protein L23 [Bacteroides thetaiotaomicron VPI-5482] # 1 114 1 96 96 143 63 4e-33 MAFIIKPLVTEKMTKITDKSSIEKTYRVKGEDRKKVAEIKYGFIVRPDASKLQIKKEIEG LYNVTVIDVNTARYAGKRSSRYTRAGLVKGQKSAFKKAIVTLKEGDTIDFYSNI >gi|281305124|gb|ADEF01000044.1| GENE 99 114712 - 115341 856 209 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212695304|ref|ZP_03303432.1| hypothetical protein BACDOR_04844 [Bacteroides dorei DSM 17855] # 1 207 1 207 208 334 79 1e-90 MEVSVLNINGQETGRKVTLNESIFGIEPNDHVLYLDVKQYLANQRQGTAKTKERSELSGS TRKLGRQKGGGGARRGDINSPVLVGGARVFGPKPRDYGFKLNKKVKQLARKSALSYKAQE NSILVVEDFNLDAPKTKDFVNIAKNLKVDGRKTLLVLPEVNKNVYLSARNLQQAEVMTAS TLNTYKVLNADVLIMTENSLKAIDEILIK >gi|281305124|gb|ADEF01000044.1| GENE 100 115341 - 115955 888 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|53715466|ref|YP_101458.1| 50S ribosomal protein L3 [Bacteroides fragilis YCH46] # 1 204 1 205 205 346 82 3e-94 MPGLIGRKIGMTSVFSADGKNIPCTVIEAGPCVVTQLKTVEKDGYKAVQLGFGEAKEKRT SKPLMGTFKKAGTTPKKHLAEFKFEEEYNLGDTITVDLFSNADFVDVVGVSKGKGFQGVV KRHGFGGVGQSTHGQDDRARKPGSIGACSYPAKVFKGMRMGGQMGGDRVTTQNLRVLKVI PEQNLLIVKGSFAGFNGSTVLIEK >gi|281305124|gb|ADEF01000044.1| GENE 101 116045 - 116236 105 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSGGVLILFNQFPHISSQRIYSQRSNSITSSLSKFINYTLISTSTPLGKSSFISASTVFA VEL >gi|281305124|gb|ADEF01000044.1| GENE 102 116155 - 116460 466 101 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29348137|ref|NP_811640.1| 30S ribosomal protein S10 [Bacteroides thetaiotaomicron VPI-5482] # 1 101 1 101 101 184 92 2e-45 MSQKIRIKLKSYDHQLVDKSAEKIVKAVKATGAIVSGPIPLPTHKRIYTVNRSTFVNKKA REQFQLSNYKRLIDIYSSTAKTVDALMKLDLPSGVEVEIKV >gi|281305124|gb|ADEF01000044.1| GENE 103 116552 - 118666 2511 704 aa, chain - ## HITS:1 COG:HP1195 KEGG:ns NR:ns ## COG: HP1195 COG0480 # Protein_GI_number: 15645809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Helicobacter pylori 26695 # 6 699 7 692 692 816 58.0 0 MANRDLHLTRNIGIMAHIDAGKTTTSERILFYTGKTHKIGEVHDGAATMDWMAQEQERGI TITSAATTCNWNYLGKNFKINLIDTPGHVDFTAEVERSLRVLDGAVATYSAADGVQPQSE TVWRQADKYNVPRIGYVNKMDRSGANFFETVQQMKDILGANPCPIQIPIGAEENFKGVVD LIKMKAMYWHDETMGAEYDITEIPAELVDEANEWRDKLLDSASNFDDDLMEKYLEGEDVT EEQLIKAIRKGTCAMELTPMILGSSYKNKGVQPLLDYICAFLPSPLDTEAIVGTNPDTDE EEDRLPSDDAPTAALAFKIATDPFMGRLVFFRVYSGKIEAGSYVYNPRSGKKERISRLFQ MDSHKEIPMDTIDAGDIGAGVGFKDIRTGDTLCDEAHPIVLESMTFPDTVISIAVEPKSQ ADIAKLDNGLVKLAEEDPTFTVRTDEQSGQTIISGMGELHLDIIIDRLKREFKVECNQGK PQVNYKEAITKDVTLREVYKKQSGGRGKFADIIVTVGPKDEDYTEGDLQFINEVKGGNVP KEFIPSVQKGFQDCLKSGVLGGFPVTGLKVTLTDGSFHPVDSDQLSFELAAHNAFKNACP KAAPVLMEPIMKVEVVTPEENMGDVIGDLNKRRGLVQGMEEARSGARIVKAMVPLAEMFG YVTALRTITSGRATSSMEYDHHAPVSTSIAKEVLEEVKGNANLL >gi|281305124|gb|ADEF01000044.1| GENE 104 118690 - 119166 729 158 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|29348139|ref|NP_811642.1| 30S ribosomal protein S7 [Bacteroides thetaiotaomicron VPI-5482] # 1 158 1 158 158 285 87 7e-76 MRKAKPKKRVILPDPVFNDQKVSKFVNHLMYDGKKSISYAIFYQALETVKEKMANEEKSP LEIWKQALDNVTPQVEVKSRRIGGATFQVPTEVRPERKQSISMKNLIQFARKRSGKSMAE KLAAEIMDAYNNQGGAYKRKEDMHRMAEANRAFAHFRF >gi|281305124|gb|ADEF01000044.1| GENE 105 119405 - 119788 597 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|150003391|ref|YP_001298135.1| 30S ribosomal protein S12 [Bacteroides vulgatus ATCC 8482] # 1 126 1 126 137 234 91 1e-60 MPTISQLVRKGRRVIESSSKSPALDNCPQRRGVCVRVYTTTPKKPNSAMRKVARVRLTNQ KEVNSYIPGEGHNLQEHSIVLVRGGRVKDLPGVRYHIVRGTLDTAGVANRTQRRSKYGAK RPKAAKK Prediction of potential genes in microbial genomes Time: Sat May 28 07:19:55 2011 Seq name: gi|281305081|gb|ADEF01000045.1| Prevotella timonensis CRIS 5C-B1 contig00031, whole genome shotgun sequence Length of sequence - 46214 bp Number of predicted genes - 45, with homology - 41 Number of transcription units - 15, operones - 10 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 184 159 ## gi|281424487|ref|ZP_06255400.1| integrase - Prom 403 - 462 4.1 + Prom 560 - 619 3.5 2 2 Op 1 . + CDS 821 - 2044 742 ## COG0582 Integrase 3 2 Op 2 . + CDS 2083 - 2547 484 ## PG0816 hypothetical protein + Prom 3398 - 3457 2.7 4 3 Op 1 . + CDS 3483 - 3914 382 ## BF2919 hypothetical protein 5 3 Op 2 . + CDS 3937 - 4356 430 ## BF0106 hypothetical protein 6 3 Op 3 . + CDS 4361 - 5635 398 ## PGN_0050 hypothetical protein 7 3 Op 4 . + CDS 5663 - 5917 267 ## PGN_0051 hypothetical protein + Term 6149 - 6184 1.0 + Prom 6771 - 6830 12.2 8 4 Op 1 . + CDS 6856 - 7782 642 ## gi|282881014|ref|ZP_06289704.1| hypothetical protein HMPREF9019_1020 9 4 Op 2 . + CDS 7827 - 8780 470 ## COG3950 Predicted ATP-binding protein involved in virulence 10 4 Op 3 . + CDS 8782 - 9702 701 ## gi|282881016|ref|ZP_06289706.1| conserved domain protein 11 5 Op 1 . - CDS 10203 - 10406 89 ## 12 5 Op 2 . - CDS 10318 - 10824 331 ## PGN_0055 probable lysozyme 13 5 Op 3 . - CDS 10839 - 11294 384 ## PGN_0056 probable conserved protein found in conjugate transposon 14 5 Op 4 . - CDS 11307 - 11879 449 ## PG1474 conjugative transposon protein TraO 15 5 Op 5 . - CDS 11879 - 12829 706 ## PG1475 conjugative transposon protein TraN 16 5 Op 6 . - CDS 12874 - 14139 1105 ## PG1476 conjugative transposon protein TraM 17 5 Op 7 . - CDS 14126 - 14419 136 ## PG1477 hypothetical protein 18 5 Op 8 . - CDS 14424 - 15047 590 ## PG1478 conjugative transposon protein TraK 19 5 Op 9 . - CDS 15065 - 16102 949 ## PG1479 conjugative transposon protein TraJ 20 5 Op 10 . - CDS 16126 - 16758 714 ## PG1480 conjugative transposon protein TraI 21 5 Op 11 . - CDS 16789 - 19299 1653 ## COG3451 Type IV secretory pathway, VirB4 components 22 5 Op 12 . - CDS 19296 - 19631 171 ## PG1482 conjugative transposon protein TraF 23 5 Op 13 . - CDS 19636 - 19938 354 ## PG1483 conjugative transposon protein TraE - Prom 19960 - 20019 7.2 24 6 Op 1 . - CDS 20093 - 20872 521 ## gi|282881029|ref|ZP_06289719.1| hypothetical protein HMPREF9019_1035 25 6 Op 2 . - CDS 20869 - 21399 391 ## gi|288802075|ref|ZP_06407516.1| conjugative transposon protein TraC 26 6 Op 3 . - CDS 21396 - 22193 539 ## PG1486 conjugative transposon protein TraA - Prom 22440 - 22499 5.8 27 7 Op 1 . + CDS 22750 - 23130 316 ## PG1488 hypothetical protein 28 7 Op 2 . + CDS 23127 - 24407 716 ## PG1489 hypothetical protein 29 7 Op 3 . + CDS 24476 - 26479 1288 ## COG3505 Type IV secretory pathway, VirD4 components + Term 26540 - 26597 3.0 30 8 Op 1 . + CDS 26931 - 27107 57 ## 31 8 Op 2 . + CDS 27053 - 27232 208 ## gi|282881035|ref|ZP_06289725.1| conserved domain protein + Term 27366 - 27411 0.1 + Prom 27235 - 27294 3.4 32 9 Tu 1 . + CDS 27435 - 27884 510 ## PGN_1199 DNA-binding protein histone-like family 33 10 Op 1 . + CDS 28015 - 28200 281 ## 34 10 Op 2 . + CDS 28241 - 29167 851 ## gi|282881037|ref|ZP_06289727.1| putative lipoprotein 35 10 Op 3 . + CDS 29124 - 30683 1338 ## gi|282881038|ref|ZP_06289728.1| hypothetical protein HMPREF9019_1044 + Term 30785 - 30830 2.2 + Prom 30821 - 30880 4.6 36 11 Tu 1 . + CDS 30908 - 32872 1403 ## BF1750 1-phosphatidylinositol phosphodiesterase precursor 37 12 Tu 1 . + CDS 32974 - 33486 454 ## COG1755 Uncharacterized protein conserved in bacteria + Prom 33847 - 33906 6.5 38 13 Op 1 . + CDS 33955 - 35355 1580 ## PG1494 hypothetical protein 39 13 Op 2 . + CDS 35377 - 37461 1321 ## COG0550 Topoisomerase IA + Term 37489 - 37536 9.6 40 14 Tu 1 . + CDS 37556 - 43750 4692 ## COG4646 DNA methylase + Term 43772 - 43810 3.0 - Term 43760 - 43798 6.2 41 15 Op 1 . - CDS 43807 - 44712 598 ## Cag_1199 hypothetical protein 42 15 Op 2 . - CDS 44705 - 45469 528 ## Cag_1200 hypothetical protein 43 15 Op 3 . - CDS 45542 - 45691 92 ## 44 15 Op 4 . - CDS 45660 - 45968 229 ## PG0850 excisionase family DNA-binding protein 45 15 Op 5 . - CDS 45956 - 46210 258 ## PG0851 hypothetical protein Predicted protein(s) >gi|281305081|gb|ADEF01000045.1| GENE 1 1 - 184 159 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|281424487|ref|ZP_06255400.1| ## NR: gi|281424487|ref|ZP_06255400.1| integrase [Prevotella oris F0302] # 1 61 1 61 436 94 70.0 2e-18 MIIKRTIKYSIQNQRNAGSRLRMRVSYNGCRVDFQTGIVLNNEYWDDVQQRVLPLNSNVV M >gi|281305081|gb|ADEF01000045.1| GENE 2 821 - 2044 742 407 aa, chain + ## HITS:1 COG:TM0967 KEGG:ns NR:ns ## COG: TM0967 COG0582 # Protein_GI_number: 15643727 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Thermotoga maritima # 131 388 2 248 253 64 24.0 3e-10 MRTNFKVSFYLRSNYENKEGKSPVMLRVFLNGEMANFGSTKIFVDKSLWNNTTSRLKGRT AEALSANAALDSISTMLNNIYHKFEDDESLSLDKIRSFFVGKDREYTTFLPIFDKFNEDV RQRVGHTISKDSLQKYSVLRRHFAEFLIYKYGKKDIGLAEFTPSVVQDFELYLSTAAGCA YNTSAKKLKALKTVTIYAQKRGYLLHDPFLNHRFHLEPVNRGFLTDEEIMKIANKEIAIQ RLELVRDVFIFSCFTGLAYIDVSNLTPDNIVTLDDKQWIMTKRQKTNVETNVLLLDIPKS IIAKYSHKTYRDGKLFPILTNQKTNAYLKEIADICGIKKNLTFHLARHTFATMSLSKGVP MESVSKMLGHTNIKTTQLYARITNKKVEHDMEQLADKLGKFNKAMGI >gi|281305081|gb|ADEF01000045.1| GENE 3 2083 - 2547 484 154 aa, chain + ## HITS:1 COG:no KEGG:PG0816 NR:ns ## KEGG: PG0816 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 4 154 6 156 157 231 81.0 6e-60 METKKELSYFRLKLENYLSEHFPELLGDKPFITARSDEALSTYCDAVAQGFSHPEAESMA SKVLHRGLHFSNYDTLVSVLENEFEKELPSPLPERLTPMLLKNKAVQSVFDKYELTDDFG ATPEYEKLYTELTGTIVLLIEVNGLATIGGENMT >gi|281305081|gb|ADEF01000045.1| GENE 4 3483 - 3914 382 143 aa, chain + ## HITS:1 COG:no KEGG:BF2919 NR:ns ## KEGG: BF2919 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 36 140 4 108 109 125 57.0 3e-28 MDKQKVNTTSSMNRKGYSSSSHYRINPTAEKSEQVLAIKFVQWDVPSLESLCNSKVYLLR VKLNRGEMMSREEKNWLCEAVNSNTYFRTAVPLQGYRFDFFDVLKKYLVNQYGQWTEYYA PDRTSLRAYLYGRINQIVEISKY >gi|281305081|gb|ADEF01000045.1| GENE 5 3937 - 4356 430 139 aa, chain + ## HITS:1 COG:no KEGG:BF0106 NR:ns ## KEGG: BF0106 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 139 1 136 138 156 60.0 2e-37 MKGTEHFTRTIAEYLNQRAMADPLFAPNLMKPNKNIEECITYILNEVQKSGCNGFEDDEI YSMAVHYYDEDNIEIGKPTNCQVMVNHMVELTEEEKAEARQEAIKQYQREELAKIQNRNA RVKKTESAAPQVQPSLFDF >gi|281305081|gb|ADEF01000045.1| GENE 6 4361 - 5635 398 424 aa, chain + ## HITS:1 COG:no KEGG:PGN_0050 NR:ns ## KEGG: PGN_0050 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 424 1 424 424 681 79.0 0 MKPRNKFEKAVLEQSKHLRPITKTQSKWAFHECIDHFAYRLPKGRTTCMDCGHSWVMNKH RETCTCPHCRAKLQVKETYERKLQQKQYFTILTTCGEFQVLRMFLLVVGMEKGYKAQSSI IEIGQYWWNMQGRKAVVAIQRVLGHYIDTFSYYSPMAIRNDNEAYQHIAYSPIYPKFKVT NILRRNGFKDNFYGIVPTQLIPALLTDSRVETLLKAGRTDHLRYFLGNKRAFEELWQSYK IAVRNGYEIADISLWSDYVDTLRRIGKDIHNPKYLCPTDLKGEHDRRHEELLRVREREEI GQKQQKAMEDEKRFKELKSKFFGIHFTDGTIQVHVLESVQEHLEEGVSMHHCVFSNEYYL KEDSLILSATIEGKRIETIEVSLRTLEVVQSRGVCNKNTEYHEQIVNLVNANRGLISRRM KATA >gi|281305081|gb|ADEF01000045.1| GENE 7 5663 - 5917 267 84 aa, chain + ## HITS:1 COG:no KEGG:PGN_0051 NR:ns ## KEGG: PGN_0051 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 84 1 84 84 130 76.0 2e-29 MKTEIENIIYNYANEIPHILIRVINAITLSDNKEGLRAAINKIAEETELNKFFAYGYGAH HFWLKHRKLSNGEPKEYRLLKVEF >gi|281305081|gb|ADEF01000045.1| GENE 8 6856 - 7782 642 308 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881014|ref|ZP_06289704.1| ## NR: gi|282881014|ref|ZP_06289704.1| hypothetical protein HMPREF9019_1020 [Prevotella timonensis CRIS 5C-B1] # 1 308 1 308 308 595 100.0 1e-168 MQRIEDDSLMVHYELQNASTTVMNAKVEAESSLCYIKALNYVSKVIGVNNNLQTGTLKKG SVIKMFCFDVDGGEETKWFRYILILIFRRLFFEKKIVRLEDLTNGLSRDEYERVKSTIQK LNINDKLLDRLNSHLYFRKARTEYFRQLSTCKEIKSVSIKHNDFDNTGNPDFQIESTSFA SYIETFVPETKIENHAKLYIVSPVIVKGKSIKWKGNYMGQDINFEIMAGQFRTEAQNAEI EFRTGSYIDCKLQFEETFDEDENPLHKEYKVLFVYGHGYDDKYTETLEGKKKRIEEAQPT LFDNLEDW >gi|281305081|gb|ADEF01000045.1| GENE 9 7827 - 8780 470 317 aa, chain + ## HITS:1 COG:STM2746 KEGG:ns NR:ns ## COG: STM2746 COG3950 # Protein_GI_number: 16766058 # Func_class: R General function prediction only # Function: Predicted ATP-binding protein involved in virulence # Organism: Salmonella typhimurium LT2 # 188 303 293 411 427 68 29.0 2e-11 MYNRYNFEWELSPNVNILAGENGSYKTTLLKIIAALCEPDNIPEAFGVKSASANMSNDIT VKYRSFRDSLLRLRKEFESDELLNELASKISTDINSQDEKSLADHTINASIIAIRKKSSK IAISTFRQERNYSLVSTFDVPTKTENISALDQQLEKLESEYAYYLSDLSKQLNDIIKSVG RVEREDMQRIYAQNDLFIEIVNHAFANTKKFVDTEQSKLQFKLEKEVLDDNKKLSSGEKQ FLIIMLTVLLQRKEESILIMDEPEISMHIDWQRELLNNLKKLNPNCQIILATHSPGVIMD GWEQLVTNISSLITRIE >gi|281305081|gb|ADEF01000045.1| GENE 10 8782 - 9702 701 306 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881016|ref|ZP_06289706.1| ## NR: gi|282881016|ref|ZP_06289706.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 306 1 306 306 594 100.0 1e-168 MSELSKNVTSKWIKATAVFGHTPSKIPVQMYVEGDDDVMLWKEAVKPYQTKYDIKVVTNK AVNPDNGNGKSKLLSMEGLCKEKVVAVDADFDLIIDNYSTYTDMVRNSSFVVTTTWHSIE NILLQKTNHIPLVEQFSLAAWDLYAYYLATVEAKEEPRPIKHYGEMISHFGVQKCASKKN YTEFKTAYKAELDNEIESHKEASAQIKEKLTRLGYNESNIWKVTRGHYLWDMIVKPQIVA RVKNKINQGIQAQRKAGKTVNRIQVMNSMGITKDVKDYVDDEFYYNGMNNADIPIETRAK LNSMFG >gi|281305081|gb|ADEF01000045.1| GENE 11 10203 - 10406 89 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLSADTREKFCVGWSNADKLSLQYFISDKPKSVIRDFGEQSIMNYYQLLKEIYYFTHYN CYISCVF >gi|281305081|gb|ADEF01000045.1| GENE 12 10318 - 10824 331 168 aa, chain - ## HITS:1 COG:no KEGG:PGN_0055 NR:ns ## KEGG: PGN_0055 # Name: not_defined # Def: probable lysozyme # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 10 167 12 170 171 219 70.0 4e-56 MRTINSFILLCVFCLFCQPTLAQRRVRLADLPPFERAIVVVKYFEGLHGWKSYPYVGYGH QLQAGEHFTADMTERQADSLLRADLWKCFEHFKGYGKDALLLTLLAYNVGVGRLLGYGKH QKSRLLQKIEAGDRNIYWEYVSFCRYKGKVLRGLVKRRQVEFAVFYLR >gi|281305081|gb|ADEF01000045.1| GENE 13 10839 - 11294 384 151 aa, chain - ## HITS:1 COG:no KEGG:PGN_0056 NR:ns ## KEGG: PGN_0056 # Name: not_defined # Def: probable conserved protein found in conjugate transposon # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 2 146 3 147 153 232 75.0 3e-60 MKKILNTIWVMGVLSLAVFCLSACDRNLDVQQSYPFTVETMPVQKDIIRGQTAEIRCTLK RGGEFADTRYTIRYFQSDGKGLLRMDNGTVFKPNDRYPLTKDVFRLYYTSLSTDRQTIDV YVEDNFGRVQQLTFSFNNEREEGKDKPASSR >gi|281305081|gb|ADEF01000045.1| GENE 14 11307 - 11879 449 190 aa, chain - ## HITS:1 COG:no KEGG:PG1474 NR:ns ## KEGG: PG1474 # Name: not_defined # Def: conjugative transposon protein TraO # Organism: P.gingivalis # Pathway: not_defined # 1 190 3 192 192 232 63.0 4e-60 MKKYLFLLACAVATMLPAQAQRLIPKQKGIEVIGSLPIIKGEKLFAKGNFGLGLSLTRYL KRENYAFMGMDYEQQNMPYRDYGIKLKDALLQVGYMQPIISDNGKNVLLYGGISALGGYE ELNEDKKLLPDGATLLDRSRFVYGGAMHGSVEVFLTDRVLFLVKAQGRFLFGTDVHRFRP TVSTGLRFNF >gi|281305081|gb|ADEF01000045.1| GENE 15 11879 - 12829 706 316 aa, chain - ## HITS:1 COG:no KEGG:PG1475 NR:ns ## KEGG: PG1475 # Name: not_defined # Def: conjugative transposon protein TraN # Organism: P.gingivalis # Pathway: not_defined # 1 316 1 341 341 498 71.0 1e-140 MKKWIFSAVLLATMGASATAQTTTLTLTPDRPLSSGELFQGMSKAIPNGRIVLPYGLEVT FEKTVHLIFPAPVRYVDLGSQNIIAGKAEDAENVLRVKAAVKDFETETNMSVICEDGSFY AFNVKYADEPEKLNVEMKDFLSPVEGRLPSNRADIYFKELGNESPILVKLMMKTIYQNDK RVFKHIGTQMFGMKFLLRGLYAHNGLLYFHTRIDNMTNMPYSVDFVTFKVVDKKVAKRTA IQEQVLQPLRAYHQVNYIKGRHTESSVFALEQFSLSEDKQLEVTLYEHNGGRTLTFYVEP QDLLLAQKIDNLKLKW >gi|281305081|gb|ADEF01000045.1| GENE 16 12874 - 14139 1105 421 aa, chain - ## HITS:1 COG:no KEGG:PG1476 NR:ns ## KEGG: PG1476 # Name: not_defined # Def: conjugative transposon protein TraM # Organism: P.gingivalis # Pathway: not_defined # 16 421 45 453 453 399 55.0 1e-110 MKMDNKQKEYLKKGLVFGGLGLLFALSMWFIFAPSGKEKSAAQQGLNDSIPQATTEQLTG NKLKAYELGDKSRQDEQTREEMGRLSDYFDSNTAPSESERAEAAASTAKIESSMHRYEEN NRLLNSFYAPDSNEQEREALRSELDNLKKELASKNENEDAEEKRQLALMEKSYQMAAKYL PQSSSTTNAAHAFTPAKEKGVLETSATKQVSVAGSLPAMEVLTERKQVVSSLNQPMTDAD FVQQYGTKPRNMGFHSLTSAVAAVSRNTLSVVVDRTATLKEGDNVVLRLLETAKVQGLRI PRQSRLIARAKIEGNRLHLLVKSIEVKGRIIAVKLSAYDTDGQEGVFILGSEDINALKEV GANIGGSMGTSFTFASSAKDQIISEAARGVMQGASQLLQKKLRTVKVTLKGGYRLFLVQS K >gi|281305081|gb|ADEF01000045.1| GENE 17 14126 - 14419 136 97 aa, chain - ## HITS:1 COG:no KEGG:PG1477 NR:ns ## KEGG: PG1477 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 11 81 3 73 95 66 49.0 3e-10 MKRTRGFSFARHYLRAHLWLRHRCDRLTAKQRKLIVFGLSFVYLVCSLVMIAQFFLPHDK EERLPIPKGTIIDSDIHTDSVFIRLYQQYSTNSNENG >gi|281305081|gb|ADEF01000045.1| GENE 18 14424 - 15047 590 207 aa, chain - ## HITS:1 COG:no KEGG:PG1478 NR:ns ## KEGG: PG1478 # Name: not_defined # Def: conjugative transposon protein TraK # Organism: P.gingivalis # Pathway: not_defined # 1 207 1 207 207 311 75.0 6e-84 MEFKSLTNIETSFRQIRLYAFVFAIVCVAVSGYAVYASYGFAKEQREKIYVLDQGKSLML ALSQDASKNRPVEAREHVRRFHELFFTIAPDKDAIEKNMERAFLLCDKSAFNYYKDLAEK GYYNRAISGNVNQRIEVDSICCNFEVYPYEVTTYARQFIVRPSNITERNLITTCTLQNSV RSDNNPQGFLMEQFMVRQNQDLQTYKR >gi|281305081|gb|ADEF01000045.1| GENE 19 15065 - 16102 949 345 aa, chain - ## HITS:1 COG:no KEGG:PG1479 NR:ns ## KEGG: PG1479 # Name: not_defined # Def: conjugative transposon protein TraJ # Organism: P.gingivalis # Pathway: not_defined # 1 338 1 338 368 506 71.0 1e-142 MDFASLHDLLRSTYDEMMPLCSDMTGVAKGIAGLGALFYIALRVWASLARAEAIDVFPLL RPFVIGFCIMFFPTIVLGTMNGVLSPIVKGTEMMVDKQEGTLAKLIAQRDKLQEEAYLRN PETAFLVSNEAFDQKIEEMGIVGPEDAITIAGMYAERSDYQMKQWILKCVHDIMEILFHA AGLIIDTLRTFILIVLSILGPVVFGIAVWDGLSGSMTAWFSRYISVYLWLPVSSILTALL TKIQVLMVQKDIETLSDPNFLPDAGSWYHIVFFLIGIVGYFCVPTVAGWIIEAGGGIGSY GRNVNQTAQRGAQGAYTGGKYLAGGAGAVAGNAIGRIKGALLKGK >gi|281305081|gb|ADEF01000045.1| GENE 20 16126 - 16758 714 210 aa, chain - ## HITS:1 COG:no KEGG:PG1480 NR:ns ## KEGG: PG1480 # Name: not_defined # Def: conjugative transposon protein TraI # Organism: P.gingivalis # Pathway: not_defined # 1 210 1 209 209 273 68.0 2e-72 MKKQVFMLLTALTLFCGGQAHAQWVVTDPGNFAGNIANSVKEIATASKTVKNTLDGFKEV EKLYNDTKKYYDDLRKIKNLIGDAYKVKECILMVGDISEIYVTSYKKMLSDKNFRPSELA AMASGYTKLLELSGESLKELKSVAKSNVFSMNDHERMQQIDHIYTTLREYRSLVSYYTRK NISVSFVRAREKGELSEVKSLYGNMASRYW >gi|281305081|gb|ADEF01000045.1| GENE 21 16789 - 19299 1653 836 aa, chain - ## HITS:1 COG:PSLT088_2 KEGG:ns NR:ns ## COG: PSLT088_2 COG3451 # Protein_GI_number: 17233453 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Salmonella typhimurium LT2 # 260 735 6 472 593 80 23.0 2e-14 MRNKSKITTLESKFPLLSIEQGCMVSKDADITVAFRVELPELFTVTSAEYEAMHSAWHKA IKVLPNYTIVHKQDWFIKERYQPKMAESGLSFLSRASNRHFNERPFLHHSVYLFLTKTNK QRMQRQSNFSSLCRGHLLPKEITDKEEVVKFMEAVDQFERIINDTEQIRLTRMKEEDLVG TAEKGGLLDRYFSLSEEGHASLEDIRLGADLVRIGDNRLCLHTLSDTDDLPTSVSTDTRY ERLSTDRSDCRLSFAAPVGLLLPCNHIYNQYLFIEDSDDNLQRFEKQARNMHSLARYSRS NQINEEWIQEYLNVAHSQGLTSIRAHFNVLAWSDDKEELRNIKNDVGSALALMECKPRHN TVDTATLYWAGIPGNAADFPSEESFYTFIEPALCFFTAETNYKDSLSPFGIKMADRLSGK PIHLDISDLPMKKGIITNRNKFILGPSGSGKSFFTNHMVRQYYEQGAHVLLVDTGNSYQG LCELIHRKTKGEDGVYFTYTDEHPISFNPFFTDDYFFDVEKRESICTLLLTLWKSADEHI TKTEAGELGSAVNTYIELIRTDHTIVPCFNTFYEYLRDVYREDMEHRDIKVTLSDFNINN LLTTLKQYYKGGRYDFLLNSDKNIDLLSKRFIVFEIDQVKDNKDLFPVVTIIIMEAFINK MRRLKGIRKMILIEEAWKAIASANMADYIKYLYKTVRKYFGEAIVVTQEVDDIIQSPIVK ESIINNSDCKILLDQRKYMTKFDGIQAMLGLSEKEKSQILSINQNNDPNRLYKEVWIGLG GMQSAVYATEVSMEEYLTYTTEETEKVEVMNRAAQLGGDIETAIRQLASEKREKRK >gi|281305081|gb|ADEF01000045.1| GENE 22 19296 - 19631 171 111 aa, chain - ## HITS:1 COG:no KEGG:PG1482 NR:ns ## KEGG: PG1482 # Name: not_defined # Def: conjugative transposon protein TraF # Organism: P.gingivalis # Pathway: not_defined # 4 97 2 95 111 144 73.0 1e-33 MAAFEINKGVGRTVEFKGLKAQYLFLFAGGLLAVFILVVILYLCGVSQITCLVIGVVGAS LVVWQTFTMNRKYGQYGLMKKGAVRMHPRYLVNRRTVCHLIRNLQPKKAKI >gi|281305081|gb|ADEF01000045.1| GENE 23 19636 - 19938 354 100 aa, chain - ## HITS:1 COG:no KEGG:PG1483 NR:ns ## KEGG: PG1483 # Name: not_defined # Def: conjugative transposon protein TraE # Organism: P.gingivalis # Pathway: not_defined # 1 100 1 100 100 147 83.0 1e-34 MNNKKKITMLFLLTATAIGAYAQGNGMAGINEATKMVTSYFDPGTKLIYAIGAVVGLIGG IKVYNKFSSGDPDTSKTAASWFGACIFLIVAATILRSFFL >gi|281305081|gb|ADEF01000045.1| GENE 24 20093 - 20872 521 259 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881029|ref|ZP_06289719.1| ## NR: gi|282881029|ref|ZP_06289719.1| hypothetical protein HMPREF9019_1035 [Prevotella timonensis CRIS 5C-B1] # 21 259 21 259 259 391 100.0 1e-107 MIINLLLGVLLLLGIAWLLLGITYFWRLFQDLEAQSGKNTPKQKGNGHGTSLNTSVSQEQ IDNARHVLVGRSKPFVSPSISEVPAASSSENSADNPDTFAEKSSQVSKEKEVESTEEDNE MQVDYTMDEPDEDTIIREELQIADDSLPEVSPSSILARDIIRVNGWHRNDDALDEESETE VHETLQAIRGTELMEYMKEAALGQEQDHQRLLAAIRKAEEAELEESNISSSPDSETDSNV ESCNNDVTEDDERPLSYYL >gi|281305081|gb|ADEF01000045.1| GENE 25 20869 - 21399 391 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|288802075|ref|ZP_06407516.1| ## NR: gi|288802075|ref|ZP_06407516.1| conjugative transposon protein TraC [Prevotella melaninogenica D18] # 1 176 1 176 176 241 96.0 2e-62 MKSLKEQREKLLQAKLEEMADIGVKKRTEENTPDFDDPIDLDDDSDSVEEDASASLSKTE EQEEIPEETSFNVTNAKTAQLSKRKRNGRTKESSPAMDFPEYEQRFLTGVRNGRNKSGFS IHTEILQILRDVLSDIRSEASITGYIENILLDHLKTYQDLLNHTASQRRRDKTIDL >gi|281305081|gb|ADEF01000045.1| GENE 26 21396 - 22193 539 265 aa, chain - ## HITS:1 COG:no KEGG:PG1486 NR:ns ## KEGG: PG1486 # Name: not_defined # Def: conjugative transposon protein TraA # Organism: P.gingivalis # Pathway: not_defined # 3 260 1 262 269 205 41.0 1e-51 MNMEKKKNNPIYLGFASQKGGVGKSSLAEVLASILYYEKNISLAVVDCDGTQESFYKLRE RDRDLIESSPELGKELHERLSRYGKKSYHIIRSKPERAVSDVMKYFRKMKTAPQLIIFDF PGHALTSAMMDLSITMDYIISPIEADPQSLASSFAYAKTIRDLGIGFEGSRIQDFFLLWN KINRTASTTVIDLFSQNAEEQGLPIFDTRIYNSVRFSRELAQGGVKGVFRCSYLPPAPAL RPQTGVDEWVKEVMEKLNLKTENGV >gi|281305081|gb|ADEF01000045.1| GENE 27 22750 - 23130 316 126 aa, chain + ## HITS:1 COG:no KEGG:PG1488 NR:ns ## KEGG: PG1488 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 10 126 14 129 133 111 49.0 6e-24 MNDKIERWDRWDTRLPNPKDQQRAIDLFQRSGAETKSDFVRGRILGENFKVITVDKSAVE YYRKLSELTAQIHKIGVLYNQTVRAINSYHSVKTAQILLEKLEKLSAQIIALQEQAISLT IDYRRK >gi|281305081|gb|ADEF01000045.1| GENE 28 23127 - 24407 716 426 aa, chain + ## HITS:1 COG:no KEGG:PG1489 NR:ns ## KEGG: PG1489 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 416 1 414 426 377 49.0 1e-103 MIAKISATENLGGALGYNFKKVEKGEASILLATELYQDRGGRYTMEDVLADMEALIPKKC RTKKAVFHCSLNPHPDEKLSDELLAQIAKEYMEALGYGKQPYIVFKHNDIAREHIHIVSL RIDGKGKKINDKFEKRRSKQITDALERKYSLIPSSKVTDREMEEVSKIDTTKGNIKEQVA ETLRSVLKHYEFCSLGELNAILSVYNLAVEEVKTEFRGKKYEGLVYVPTDDKGDKVSTPI HASDIVRGVGYTAIQNRMQKSKRAIKPLVPTVRNKVLQTMRTSPQTEEELRQRLEEQGLR VIIRKNESGRIYGITFIDDERGVAFNGSRLGKGYSANVFNAYLSNPTHNPFLDEALYGNP SERLEQTTTNESLHLNTEECDNLVDELIEDMVDGSFTSTGNDDWKEAAWQRKLRRQSKVN LRRRKH >gi|281305081|gb|ADEF01000045.1| GENE 29 24476 - 26479 1288 667 aa, chain + ## HITS:1 COG:alr7213 KEGG:ns NR:ns ## COG: alr7213 COG3505 # Protein_GI_number: 17233229 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Nostoc sp. PCC 7120 # 201 558 117 466 589 94 24.0 6e-19 MAQEDDLRALGKVMDFMRGISVIFLLINCYWFCYEAFQSWHFTLGIIDKILMNFQRTTGL FSSILWTKLFCVVFLALSCLGTKGVKEEKITWPKIWTVLFAGFVFFFLNWWLLALPIGKI GAASLYIFTLSIGYICLLMGGVWMSRLLKNNLMDDVFNTENESFMQETRLMENEYSVNLP TRFYYKKKWNNGWINVVNPFRASMVLGTPGSGKSYAIVNNYIKQQIEKGFAMYIYDYKFP DLSEIAYNHLLNHLDAYQVKPQFFVINFDDPRKSHRCNPINPSFMTDISDAYESAYTIML NLNRSWIQKQGDFFVESPIILLAAIIWFLKIYENGKYCTFPHAIEFLNRPYAQIFPILTS YDELANYLSPFMDAWEGGAQDQLQGQIASAKIPLSRMISPALYWVMTGDDFSLDINNPNE PKVLVVGNNPDRQNIYSAALGLYNSRIVKLINKKKQLKSSVIIDELPTIYFRGLDNLIAT ARSNKVAVCLGFQDFSQLTRDYGDKESKVIQNTVGNVFSGQVVGETAKTLSERFGKVLQQ RQSMTINRNDKSTSISTQMDSLIPASKISNLTQGMFVGAVSDNFDERIDQKIFHAEIVVD SAKVSADMKTYKPIPNITDFTDKESCDTLKETIEANYRKVKQEIRSLVDSEIQRIKHTPS LAHLVKD >gi|281305081|gb|ADEF01000045.1| GENE 30 26931 - 27107 57 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MYEIAKAGNATTKTMKTTYSRIALIEIKTIKDYVTKKRTRLWRKRAKRSLKKTTNYLQ >gi|281305081|gb|ADEF01000045.1| GENE 31 27053 - 27232 208 59 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881035|ref|ZP_06289725.1| ## NR: gi|282881035|ref|ZP_06289725.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 59 1 59 59 96 100.0 5e-19 MEEKSEKVAKKDDKLFTINKETDEVMTKVIVKQRKLYEAPFCTVIKIGSQSDLLHGLCT >gi|281305081|gb|ADEF01000045.1| GENE 32 27435 - 27884 510 149 aa, chain + ## HITS:1 COG:no KEGG:PGN_1199 NR:ns ## KEGG: PGN_1199 # Name: not_defined # Def: DNA-binding protein histone-like family # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 135 1 135 152 204 80.0 5e-52 MANRPLAYVLTERKATLGKLAGKTVIQALPTGRKRIDHRSFCDEVARATTFTGAEVEAVL RLAAEIAKRHVENGDSVDFGDIGTLTPTFSSSLVEKGKEEFSPAKHISKPAVRLKPSRKY FTLSGVSYERTEAPAKAKSESSEKPSPNP >gi|281305081|gb|ADEF01000045.1| GENE 33 28015 - 28200 281 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKEVINIQETTREKKRYVRPQITMIPMLAEHALLAGSDKKPGGGSLEGSEHSEIPDNPDE D >gi|281305081|gb|ADEF01000045.1| GENE 34 28241 - 29167 851 308 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881037|ref|ZP_06289727.1| ## NR: gi|282881037|ref|ZP_06289727.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 308 1 308 308 604 100.0 1e-171 MKHLFKPYTALAVAAILALFATSCADDTITSESQKLNNGTLDTEAFTTIAVDLNATVQAP NIVQEGSGTRAIALDKQSLPILHGTELKARIFIVRAGDDDKAMVNGKEAVDPKKIVLGTG EMNWSNVEPKQDGTIDINSDGIVKFHWLNGKSAMPKEGEKWYVCGIIGGEYNPDFDKART DMTLDENKRKLAENLYRFYVDLDPKHTNLHNTVDAKGNILANVPFTTGWKPLVMQNGKIV IKGWKFNMIGNLIRFKVKRNTELVKPEGHKYTFASSQITARGGFLMMPPSLFRSNADLAT DHFLWSRL >gi|281305081|gb|ADEF01000045.1| GENE 35 29124 - 30683 1338 519 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881038|ref|ZP_06289728.1| ## NR: gi|282881038|ref|ZP_06289728.1| hypothetical protein HMPREF9019_1044 [Prevotella timonensis CRIS 5C-B1] # 45 519 1 475 475 961 100.0 0 MPTSPRTTSFGLDCELRPWNESIESNFYWLYENDRQLHFNNPANMNPLEESADYGSPLYE YRYTFDASAMRKGKEKAEYDEFYVWGMPIPKLNYIGQTMLTAERGGFMLGKKQKEGERYP YANEWLLAQSKPQEWTGEFIPRDFKSDKYKNKVQVVELGVCRPCFGKMRDGKPAYPWANP LERLAVTNSKTDEVGFHDTNTPHPNEADYGWVSNWSLKSGDMKMRFALNSGTMKPQDYHL PTGEEWGLALPNILTSIYEGKLPIGLTGWDNIKPAPNPYFEMYDPEEDDMRPIISAGETH NSNKSDMQEERFWNNKPIFYSYFMQNRSRLELYAIRFDGNNKEAQSHKDRRPYGNRYRCA YRWRFMDAGGPDVTNDGRGMRLVVQSRWIGNANVTVRDIMDDKWWGECSDSNPLYLTDCY RVLPCVGFPFPKGAPTWRMAYWSRTRWKHNTYDKDDAYSNKTFCYRVLSRDGFDRGHNDN ATLHYGVRLMVNRDVDEFGKRAPRQLQKDKDEQRLIHRK >gi|281305081|gb|ADEF01000045.1| GENE 36 30908 - 32872 1403 654 aa, chain + ## HITS:1 COG:no KEGG:BF1750 NR:ns ## KEGG: BF1750 # Name: not_defined # Def: 1-phosphatidylinositol phosphodiesterase precursor # Organism: B.fragilis # Pathway: Inositol phosphate metabolism [PATH:bfr00562] # 362 628 63 326 345 129 33.0 5e-28 MATRQNSYQEITKTTTLLTALYALLCAMLLCACDNGTDAEPEEPHRQPRIVRLSVEVANA TVSYDKPAATRAMSYEFEGETLFPQLRLKSGETQKGICAIRNDNPKIPVRCVPVEWIVRG NTLWCDNITTEVECPDGEELGNWQACFMLGQGTYDAKSQRMTFGVSRMAQPITRGEEQQW NLPYLSPWLPLKTHDGIHLHTPHVRFTPQGAFIRMRLTNDTGRELDLAELRMRASDASMQ AAPFVWEATWQTDSRATEPAVAPVLLKKGEDFVCPLTQPLTLKPGETSGWYGFWAMPIGK QAGYLSDIYAIPTTERKGKRTPWWIHHTPLEGRSGAQGPKAGLTYTLSLRLRQLVPTTNA NWMQNIEDDRLVCKMSIPGTHDTGAWTGIVWVKTQDKDIKGQLESGIRFFDIRLVLDGDV LKLCHDRFVFDRTFHKDVLRATADFLREHPSETVIMTIKRDYDYDHDGGDKYRKAVSNVL KADPYVTPYIAGAFSPDLTMGDLRGKMLIVSREGWYSTNSGWIESWPNNRQFSTTLQSMN YTRTTLHVEDTYKCEAKDKVSLVRQNLLKASEAYGSAAPDWFITFCSYTGYNGIGAPNTV TKYVDPYVMDILRGDDNMRTTGILLFNFAGWWDNGLTNIAIKFNDTATPPLKQW >gi|281305081|gb|ADEF01000045.1| GENE 37 32974 - 33486 454 170 aa, chain + ## HITS:1 COG:HI0318 KEGG:ns NR:ns ## COG: HI0318 COG1755 # Protein_GI_number: 16272272 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Haemophilus influenzae # 1 169 1 169 172 178 56.0 5e-45 MQYAIIIFASFFVLRLFSLAYSIKNEKRLIKCGATQYGKRNSLLLTLAHIAYYFGALYEG YASNMEFDRVSVIGVAVMAFAYLMLFYVIYKLRDVWTVKLYIVPNHRIERSFLFRTVRHP NYFLNIIPELIGVALLCHAWTTLCVGLLLYGYLLMVRIRQEERAMRHLLS >gi|281305081|gb|ADEF01000045.1| GENE 38 33955 - 35355 1580 466 aa, chain + ## HITS:1 COG:no KEGG:PG1494 NR:ns ## KEGG: PG1494 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 34 466 1 437 437 464 57.0 1e-129 MELNNNDNYVLVLEDRAEVKNENEAGKLSVVSGIDDKGNLKTTEAAAANQAAFLKFNNKD GLLKNFMSNFLRQFNDPSRFGLYKVLANNVEQGVNNLRTMLQSREKPESKQQLTEIGVSF DDYLPKKKNATVIDESKIDWKQLGDLGLTRERLEQSGELAKMLNWQKSNLVTIAIPMGDT TIYTDARLAFRTDGEGNIGLAVHPLRKEPQLDFPYMGHKFSPEEKEQLLATGNLGKTIEI TPKNGEPFAAYVSIDPQTNELIALRADRVNIPKEIKGVTLSDAQYKDLVEGKAVKVEGMT AKSGKSFNATLQVNAEKKGIEFIFENKQGLKERQQHSQQQGAPHKLCGLELSDKQREALD SGRTLYLKNMVDKEGQPFNAYVRMDKEQNRPRFYKWNPDKKQETGKEKVVAVAEEHKTQV AVNNDGKTNEATKNVNEPLKSGQTQPTAAQKQKQDEKKQQHRGRKM >gi|281305081|gb|ADEF01000045.1| GENE 39 35377 - 37461 1321 694 aa, chain + ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 5 634 6 655 709 435 41.0 1e-121 MITCIIAEKPSVARDIARIVGANTRQDGYLEGNDYVVTWAMGHLITLAMPEAYGFAVYKA EDLPIRPNPFQLIVRQVRKDKEYTSDPAALKQLKAIRVCFDKADRIIVATDAGREGELIF RYIYNHLNCHKPFDRLWISSLTDKAIREGLAHLKAGTAYDNLYHSAKARSEADWLVGINA SRALSIARKGGYSLGRVQTPTLAMVCRRYIENRDFSSVPYWKLSVAGEKEGISLKAVSSS AFDNEADAQSALAMLREQSQLTVTSVARKVGHTSPPLLYDLTALQKEANRKHGFSADKTL SIAQSLYEKKITTYPRTGSRYISEDVFEEVPALLGKIGKTLPLPLNRHSVDNEKVTDHHA IIPTGETPSGLSADETTIHQMVVYRFIEAFSPDSEEERMQVELTDGTNTFVWKTCRNISL GWKAVQQGTGTTDEKNKEDEEQILSVLPNLTEKEVLPLLFSEITEHKTKPKPLYTEATLL SAMENAGKEVSDAESKRAMAECGIGTPATRANIIETLILREYIRREKKAIVPTEKGLAVY EIVKDKRIANAEMTGSWELTLAAIEAGQLPPEKFAQGINSYVETICEELLALAPPMQKSY PTYRCPKCGNESVGIYAKIAKCRHEGCDFHIFREVCGTFLSEDNIRDLITTGRTPILKGL TSKAGKKFNARLVLVEDHTTAFEFEGKKGKARGR >gi|281305081|gb|ADEF01000045.1| GENE 40 37556 - 43750 4692 2064 aa, chain + ## HITS:1 COG:AGpT188_2 KEGG:ns NR:ns ## COG: AGpT188_2 COG4646 # Protein_GI_number: 16119916 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 908 1843 236 1150 1315 360 29.0 2e-98 MAYNKKAVLEGNTEAIRVILRLEKERREATEAEKVLLRGYQGFGGLKCVLNRCDNPDDLR YWSASEQNLFAPTQRLKQMIYRDAVDASTAKRYWESIKASVLTSFYTDTRIVSAIADALN VTDVQIRRCLDPSAGMGAFTETFAKSAGMVDAMDKDLLTARITQALHPYGKDNIFVRQEP FEAIGELEEKDKYDLITSNIPFGDFMIYDRSYSKGENILKRESTRTIHNYFFVKGLDTIK EGGLLAFITSQGVLDSPKNEAIRRYLMQNSRLISAIRLPSGMFSENAGTDVGSDLIVLQK QSGKEIGEGIEQQFVKTASVSKGDGFSIAFNHNSLFEGEWKDISHRTIATNRTMGTDPYG KPAWEYTFDGSIEDMADSLRTQLSLEVEQRFDRKLYETGIPMTEEEWQVHVDKMVQKVQG GLKTEQPPLLQESKDKEEKKEDKEDEKEEENAYNLMPDSTKKQLPKLYATEKQLIGDRTA YARYFFPMGAYTAYMLEYDPKERIGFGAVTMGYGWELGYMSLKEMEEVKIHGLGIERDLY FKPTKLHEIAELEEIVRGQYTKEPIIEEIKDESRQEVLRPVQEGTQPQAMVEQVEEVLKV EEAAPVLHTEPETEPAPEGVPVITLQRQYEQESREIRTDVEAPREMNGQTVFFDEDHHPI MDSTIETEAMEQFLFAPEEYSLWTQDVARVNNEIKEAAQQKKVSDNQPLSASRQPKPARS TPSSSRRSKKTASAPVREPSLFDFMEEAEPRKPQPIAEVKKEFDASPRPFLSSPDSHLRD GSIVVQNGQVGFLSDLKRHPTFNPMDLPFAQLSRLKAYIGIRESYHRLYDYEANNQAEDK EEREKLNRLYDGYVGRWGYFNQKTNTDVIKMDATGVEMLFLERSENGKYIKADIFDHPTA FSTSELSIASDPMEALGASLNKYGTVELDYMSSLLPDMEESDMLSALEGRIFYNPEEDSY EVADKFISGNVIEKAERIESWLLDHPEHEEAKQSLTALRAATPTPIPFADLDFNLGERWI PAKVYGKFASEFFETDIRVSYHSNMDEYAIGCDQKNGNIWHKYAVQGEFRRYDGLNLLKH ALHNTIPDINKSKTILDAEGNEKTIKVRDGHAIQMANAKIEEIRQGFVDWLGRTPDTFKE QLSDRYNRLFNCFVRPNFDGTHQSFPDLDLKRLGIQDLYKSQKDAVWMLKTNGGGICDHE VGAGKTLIMCTAAYEMKRLGLANKPMIIGLKANVFDIADTFRKAYPNAKILYPGKNDFSK QNRQRIFNDIKNNDWDCIILTHEQFGMIPQALEIQEAILQKEKDSVEENLEVLRMQGADI SRAMLKGLEKRKQTLEAKLQDIQDSIAERKDDAVDFKMMGIDHLFVDESHQFKNLMFNTR HDRVSGLGNPDGSQRALNMLFAIRTIQERSGKDLGATFLSGTTISNSLTELYLLFKYLRP QALEKQGINSFDAWAAVFAKKSTDYEFSITNEIIQKERFRTFIKVPELASFYAEICDFRT AKDIGIDRPEKNEILHNIPPTPEQEEFIGKLMEFAKNGDATLLGRAPLSESEEKAKMLIA TDYARKMSLDLRMIDENAYSDHIDNKASHCAKMLNDYYQKYDAQKGTQFVFSDLGTYKPG GEFNIYSEIKRKLVEDYHIPSYEIRFIQECKNEKAKKAMVDAMNRGDIRIIFGSTSMLGT GVNAQQRAVAVHQLDTPWRPSDLEQRNGRAIRKGNLVAKEFANNKVDVIIYAVERSLDSY KFNLLHNKQLFINQLKTNTLGSRTIDEGSMDEDSGMNFSEYVAVLSGNTDLLEKARLDKK ITTLESERKNFLRERDAATGKLAEIESSVSFHSDKIKEAKADLACFKQRVERDKEGLPVN KLIIKGVEDCTDIKIVAARLHEIEEKARTKGEYNKIGDIYGFSIMVKTESTSKDLFDCSV NRFFVKGQESIYYNYNNGKLATDPKLACENFVNALERIPKLIESHEKEIAKVVANKEVYT NFANSSWKKENELRSLKSEAAELDRKIALTLAPPEGEKEETEEMKQGEDLSDHYHSGGVK NESYLVQDREDNSRLQSFRPKWRH >gi|281305081|gb|ADEF01000045.1| GENE 41 43807 - 44712 598 301 aa, chain - ## HITS:1 COG:no KEGG:Cag_1199 NR:ns ## KEGG: Cag_1199 # Name: not_defined # Def: hypothetical protein # Organism: C.chlorochromatii # Pathway: not_defined # 1 299 1 305 308 246 42.0 6e-64 MNDQQYKKQVSLLLRIMPLVYKITDFAVHGGTAINLFHQNMPRYSVDIDLTYIPIEPRTA SLEKINQHLGELKTSIERAIPGIHVVHKSEVWKLQCTHDGATVKIEVNGTKRGILGEVEI MELCPKAKEEFQASCKARIVPYSQLYGGKIAAALSRQHPRDMFDCKYMKDQTLESVKGGL ILCLLGSDKPIVESLSPNNINQEEALENQFKGMSDIPFTYTDYEQARKSIIKKVNDCLTN TDKEFLVSFEEGTPLWNKCCAGDLSLYPSVQWKLLNIGKLKKQTPDKHKEGIDKLKGYLL I >gi|281305081|gb|ADEF01000045.1| GENE 42 44705 - 45469 528 254 aa, chain - ## HITS:1 COG:no KEGG:Cag_1200 NR:ns ## KEGG: Cag_1200 # Name: not_defined # Def: hypothetical protein # Organism: C.chlorochromatii # Pathway: not_defined # 8 250 26 270 273 177 40.0 3e-43 MSVLKGKKINQMLQSGQKNGLLFATWLVEHGYSRQLLSRYRSSGWLSSLCKGVMYRTGDT LSAFGALQSFNEQVGKSFRVAAHSALELWGFNHYVPMGKPLLMVSTASDKMPQWMKHDIF DREFKFFKTEVFINAQITTLTYLDWRLLISSPEQAFMECLLLTPRQYNYMDLFYIMEQLT TLRPNVVQSLLETTKHYKMKRLFLYMAEKAGHYWYEDLDLTKIDVGTHKLQLVKSGIYIS KYKMIIPKELNDYE >gi|281305081|gb|ADEF01000045.1| GENE 43 45542 - 45691 92 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKCYGSEKVGRSQFYTSMLEMFMFYFILFFLTVVEILSYKSTISLLSGK >gi|281305081|gb|ADEF01000045.1| GENE 44 45660 - 45968 229 102 aa, chain - ## HITS:1 COG:no KEGG:PG0850 NR:ns ## KEGG: PG0850 # Name: not_defined # Def: excisionase family DNA-binding protein # Organism: P.gingivalis # Pathway: not_defined # 1 102 1 102 102 155 78.0 4e-37 MPYINYNAEDTWQKCLFDKLMNVEDKLDRLLVLQEQSVDTTVHPPLKPEYLDIIDVSKIL KVEQKTIYNWVWAGKIPYLKANGRLLFLRKEIDEMLRKREGW >gi|281305081|gb|ADEF01000045.1| GENE 45 45956 - 46210 258 84 aa, chain - ## HITS:1 COG:no KEGG:PG0851 NR:ns ## KEGG: PG0851 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 84 305 388 388 143 83.0 2e-33 MHVYRGEKSKEDKEKRKTDELVGVIRETFRNSFKLTYQELCDVLMREMEIKDRTAKKYIA YMKELHILAQDINGNYQKGELCRT Prediction of potential genes in microbial genomes Time: Sat May 28 07:22:59 2011 Seq name: gi|281305076|gb|ADEF01000046.1| Prevotella timonensis CRIS 5C-B1 contig00026, whole genome shotgun sequence Length of sequence - 8040 bp Number of predicted genes - 6, with homology - 4 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 134 - 463 227 ## + Prom 137 - 196 4.1 2 2 Tu 1 . + CDS 396 - 584 61 ## + Term 617 - 641 -0.3 + Prom 934 - 993 4.0 3 3 Op 1 . + CDS 1062 - 3071 2244 ## COG1158 Transcription termination factor 4 3 Op 2 . + CDS 3074 - 5905 2718 ## COG0178 Excinuclease ATPase subunit 5 3 Op 3 . + CDS 5957 - 6868 566 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 7013 - 7067 3.7 + Prom 7439 - 7498 10.2 6 4 Tu 1 . + CDS 7690 - 7872 142 ## gi|282877495|ref|ZP_06286314.1| conserved hypothetical protein Predicted protein(s) >gi|281305076|gb|ADEF01000046.1| GENE 1 134 - 463 227 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQQPWLRSKAGRSPKGNTAQGNTLGTSLLTNWRAVSATGTSEMLVRSFLLLFQSAKYLIH CYPGRCPGLYSYWAFSPSLQQANHLFKVKQQNFKANKAAEIIFLIVATE >gi|281305076|gb|ADEF01000046.1| GENE 2 396 - 584 61 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLPWAVFPLGLRPAFDRNHGCCTLRRIILLLGLRPVPAYNIGCCTLRRIIFLLGLRPLLL VL >gi|281305076|gb|ADEF01000046.1| GENE 3 1062 - 3071 2244 669 aa, chain + ## HITS:1 COG:RSc1187 KEGG:ns NR:ns ## COG: RSc1187 COG1158 # Protein_GI_number: 17545906 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Ralstonia solanacearum # 298 667 46 416 420 449 60.0 1e-126 MYSKDELSSKDVRELTDIAQELGANLDATQTPEQLIDTILEKQNADDDNSASTGTKRKRV RIAKHEIDRVYSVNGKEGENFDLKKNRPVSEPISLFKDQLEEEAPADDETPALSPEEELA AMPKHRGRKTKRELELLAMIEAKNKEQAATEQEEEKEEQKAEEEEEKSADTPLTEEDNAI PEEKEEEEVILEESATAASEEPHKEQGMSNLLAQLQAKVDAHNENVQEHRENVLDGIWEG DPGDGTDFIIVQDLPIMDQGAVPNFDMLDNPTTPINPPTSYQAPTPMTNANQPAYDFADL IQANGVLETMPDGYGFLRSSDYNYLSSPDDVYVASAQIKKYGLKTGDVVQCRVRPPHDGE KYFPLTTIDKINGRNPNEVRDRIQFEHLTPLFPDEKFTLCGDRETTNLSTRIVDLFSPIG KGQRALIVAQPKTGKTILMKDIANAIAANHPEAYLMMLLIDERPEEVTDMARTVNAEVIA STFDEPAERHVKIAGIVLEKAKRMVECGHDVVIFLDSITRLARAYNTVSPASGKVLTGGV DANALQKPKRFFGAARNIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRSL SNKRIFPAVNLVASSTRRDDLLQDKTTLDRMWILRKYIADMNPVEAMHTLHDRMVRTRNN EEFLLSMNS >gi|281305076|gb|ADEF01000046.1| GENE 4 3074 - 5905 2718 943 aa, chain + ## HITS:1 COG:FN1103 KEGG:ns NR:ns ## COG: FN1103 COG0178 # Protein_GI_number: 19704438 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Fusobacterium nucleatum # 1 940 16 955 960 809 45.0 0 MNEDIEIKGARVNNLKNISIRIPRNQLIVIAGLSGSGKSSLAFDTLYAEGQRRYVESLSA YARQFLGRMSKPECDFIKGLPPAIAIEQRVIARNPRSTVGTSTEIYEYLKLLFARIGKTF SPISGEEVKKHSTDDLVDCMLQYSAGTKFAVVSPLHLIEGRTLEKQLEMEIQEGYTRLWL NNEFVRIDDLLQDKAALKAIPFDQIFLLIDRLSVNNDKDTISRLTDSAETAFYEGHGECM LVFFPSNITYQFSTRFEADGMKFEEPNDNLFSFNSPLGACPTCEGFGSIIGIDEKLVIPN TTLSVYDGCVQCWHGEKMGEWKNEFCRRAAQDNFPIFKPYLELSRKEKDMLWHGLPSEKQ KDIHDQVSIDAFFQMVKENQYKIQYRVMMSRYRGRTVCPTCHGTRLKQEASWVKIQGMSI TDLVEMPIVNLKQWFNELTLDEHEQQIGKRLLTEINNRLQFLLDVGLGYLTLNRQSNTLS GGESQRINLTTSLGSSLVGSLYILDEPSIGLHSRDTQRLIEVLKKLQALGNTVMVVEHDK EMMCAADTLIDVGPDAGRLGGEIVFNGSLQEVLQHPAEMARKYPRSHTIQYLTGNETIDM PTSRRSWNHAIKVVGARQNNLKGIDVSFPLNVLTAVTGVSGSGKSTLVKGILYPALKRHL NEVADQPGEYISLEGDWKYIQHVEFVDQNPIGKSSRSNPATYVKAYDAIRQLFAEQPLAK QLGFSAQYFSFNTEGGRCEECKGAGTITVEMQFMADLELECEACHGQRFKKDVLDVRVAG KNINDVLNMTIAEAIEFFDALQQKSIVARLQPLYDVGLGYIKLGQSSSTLSGGENQRVKL AYFIGREKQEPTLFIFDEPTTGLHYLDIKRLLSAFDALLNRGHSILVIEHNLDVIQYADH VIDLGPDGGDKGGNLVATGTPEEIAKCKDSVTGQYLKRELHKA >gi|281305076|gb|ADEF01000046.1| GENE 5 5957 - 6868 566 303 aa, chain + ## HITS:1 COG:CC2427 KEGG:ns NR:ns ## COG: CC2427 COG0463 # Protein_GI_number: 16126666 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Caulobacter vibrioides # 6 294 22 306 309 100 31.0 3e-21 MNRTELSILIPTYNDCCVELVNNLAQQAMRLSGLSYEIIVLDDASNRPEVLLQAAYINEL RNTRFVRRETNVGRAKIRNILTSMARYQWLLFLDSDMEIVSPDFLERYLQAPPEAAVVYG GNSVQRDRLPHDGTLKYRYEKAAEQTHDAAQRNKQPYQQFNTSNFLVARWVMEGHPFDER IQTYGYEDVLFGKTLRTAGIPILHIDNPVGFGTFESNCSFLAKTEEAMHTLFQYRKELVG YSNVLHTYAHLRRFRLAWLVRLLFLCAKKRMRTQLLSTHPSLFVFKCYKLGFYASLPHDQ QQG >gi|281305076|gb|ADEF01000046.1| GENE 6 7690 - 7872 142 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282877495|ref|ZP_06286314.1| ## NR: gi|282877495|ref|ZP_06286314.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] # 9 60 389 440 449 115 100.0 9e-25 MEIRRDIINCVSGRSLSVYNERYHPQERIRFSFLNLQYNEGLLSCPSPLADWFYRLLPNE Prediction of potential genes in microbial genomes Time: Sat May 28 07:23:17 2011 Seq name: gi|281305060|gb|ADEF01000047.1| Prevotella timonensis CRIS 5C-B1 contig00029, whole genome shotgun sequence Length of sequence - 16737 bp Number of predicted genes - 17, with homology - 12 Number of transcription units - 11, operones - 5 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 16 - 813 755 ## COG3291 FOG: PKD repeat + Term 847 - 888 -0.8 - Term 826 - 878 16.3 2 2 Tu 1 . - CDS 965 - 1159 110 ## - Prom 1189 - 1248 2.1 3 3 Tu 1 . - CDS 1648 - 1830 129 ## - Prom 1860 - 1919 3.3 + Prom 1528 - 1587 5.4 4 4 Op 1 . + CDS 1835 - 2926 1246 ## COG0012 Predicted GTPase, probable translation factor 5 4 Op 2 . + CDS 2993 - 3841 798 ## COG0682 Prolipoprotein diacylglyceryltransferase 6 5 Tu 1 . + CDS 3945 - 6332 2495 ## COG3250 Beta-galactosidase/beta-glucuronidase + Term 6355 - 6393 1.2 7 6 Op 1 . - CDS 6298 - 6429 63 ## - Term 6436 - 6470 1.1 8 6 Op 2 . - CDS 6473 - 7795 1002 ## COG3669 Alpha-L-fucosidase 9 6 Op 3 . - CDS 7815 - 10478 2504 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 10498 - 10557 6.2 10 7 Tu 1 . - CDS 10882 - 10986 60 ## - Prom 11013 - 11072 3.8 + Prom 11395 - 11454 8.6 11 8 Op 1 . + CDS 11535 - 12932 733 ## Slin_6168 integrase family protein 12 8 Op 2 . + CDS 12995 - 13786 540 ## gi|282881063|ref|ZP_06289751.1| hypothetical protein HMPREF9019_0996 + Prom 13901 - 13960 2.9 13 9 Op 1 . + CDS 13991 - 14269 229 ## gi|282881064|ref|ZP_06289752.1| conserved hypothetical protein 14 9 Op 2 . + CDS 14282 - 14773 278 ## gi|282881065|ref|ZP_06289753.1| conserved domain protein + Prom 14870 - 14929 8.6 15 10 Tu 1 . + CDS 14988 - 15794 466 ## gi|282881066|ref|ZP_06289754.1| hypothetical protein HMPREF9019_0999 + Term 16043 - 16093 4.1 + Prom 15876 - 15935 12.9 16 11 Op 1 . + CDS 16107 - 16295 255 ## + Term 16305 - 16336 1.1 + Prom 16314 - 16373 9.8 17 11 Op 2 . + CDS 16400 - 16582 298 ## gi|282881067|ref|ZP_06289755.1| conserved hypothetical protein Predicted protein(s) >gi|281305060|gb|ADEF01000047.1| GENE 1 16 - 813 755 265 aa, chain + ## HITS:1 COG:MA4289 KEGG:ns NR:ns ## COG: MA4289 COG3291 # Protein_GI_number: 20093078 # Func_class: R General function prediction only # Function: FOG: PKD repeat # Organism: Methanosarcina acetivorans str.C2A # 5 236 868 1103 1734 68 29.0 2e-11 MSGMFYGCETLTSLDVSNFNTQKVTNMNGMFEGCKALTSLDLSNFNTRHVTEMGSMFEDC QALTSLDLSNFNTQNVTYMRGMFENCKALTSLDVSNFNTKNVTDMNYMFSGCKALTSLDL SKFNTRKVTNMSYMFFGCKSLTSLDLSNFNTKNVTDMSCMFSGCTSLTTIFCNSNWNDRY KIYDSFMFNNCTKLKGTNTAYNANKTGIKMANPTTGYFTSKTTGIDHVKTVDQAGDSKAY DLSGRRVNESYKGIVIKNGKKYIQK >gi|281305060|gb|ADEF01000047.1| GENE 2 965 - 1159 110 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MMWVLFVASISLFNIGAALFCVRDEFTQKFELAMLCLNNNCYICHHNIEYPNIDENSFSQ KINT >gi|281305060|gb|ADEF01000047.1| GENE 3 1648 - 1830 129 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTCRYFNIIVYSAKIARAEDRESLLSMLRRSLSSAKIVQNFDLVSQIRIYSIICEREKFI >gi|281305060|gb|ADEF01000047.1| GENE 4 1835 - 2926 1246 363 aa, chain + ## HITS:1 COG:SP0004 KEGG:ns NR:ns ## COG: SP0004 COG0012 # Protein_GI_number: 15899953 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Streptococcus pneumoniae TIGR4 # 25 363 29 371 371 363 56.0 1e-100 MWYCRVAKRGQVYPIQLLVECQGTGSKFPFCTIEPNVGVITVPDERLTKLAEIVHPGRIV PATCEIVDIAGLVKGASKGEGLGNKFLGNIRECDALIHVIRCFDDDNVVREGGMAVNPVS DKEVIDTELQLKDLETIEAQLSKQQKIAASGNKEAKTLVTVLEAYKEVLEQGKNARTVLF DTKEEEEAAHNLFLLTTKPVLYVCNVDETSAKEGNAYSAQIEKIAQEEGAEAMVIAAKTE EDIASLETYEDKQMFLEELGLTESGVNRLIKKAYSLLNLQTFITAGEMEVKAWTYHKGWK APQCAGVIHTDFEKGFIRAEVIKYDDYIKYGSESAVREAGKLGIEGKEYVVQDGDIMHFR FNV >gi|281305060|gb|ADEF01000047.1| GENE 5 2993 - 3841 798 282 aa, chain + ## HITS:1 COG:VC0674 KEGG:ns NR:ns ## COG: VC0674 COG0682 # Protein_GI_number: 15640693 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Vibrio cholerae # 11 270 10 255 271 122 33.0 6e-28 MIDHLLYILWNPDLEIFRIGNFAIRWYSTCWLIGLALAYFIVKWLYKDQKVKDAYFDPLF MYCFLGILIGARLGHCLFYQPEYFLSSWTHVVEMFLPIHQMADGSWKFTGYEGLASHGGT IGLMVALYLYYRKTGMNLWHVLDDIAIATPITACFIRLGNLMNSEIIGTPTNVPWAFIFE RVDMTPRHPGQLYEAIAYFFFFFVMLHFYKRTSKKVGTGFYFGLCLTLIFTFRFFIEYTK DIQVDFESGMIFNMGQLLSIPFIILGIACMRGGKWMKKLGAK >gi|281305060|gb|ADEF01000047.1| GENE 6 3945 - 6332 2495 795 aa, chain + ## HITS:1 COG:SP0648_2 KEGG:ns NR:ns ## COG: SP0648_2 COG3250 # Protein_GI_number: 15900551 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Streptococcus pneumoniae TIGR4 # 40 781 84 870 871 406 34.0 1e-112 MTNKTFTLLAFLALSGACMAQNRVEKELSSWQFSRNGDAWQPVTVPHDWAIKGPFDKQWD RQFLGITQDGQRTPIWHTGRSGGLPWLGRGEYRTTINIRNLDARTELYFDGAMSEPVVYV NGTEAGRWAYGYNAFRIDITPYLKRGDNEILVKLNNLEESSRWYPGAGLYRPVTLITTNK TYIDPWQTYFRTLSVSQQGAEIAVNAQTKGLRENDKLKTHIILKDKDGRTVAQNTVENDA KGDVATTLNIKNPQLWSPEHPYLYTLQICVKRGSKTLDATSQQVGIRTIAITKEHGFQLN GITRKFKGVCLHHDLGPLGAAANKAAMIRQIRIMKDMGVDAIRTAHNMPSQMQMQVCDSM GMMVMAESFDAWKEPKVKNGYNRFYDEWWRKDLTNLILGHRNHPSIVMWSIGNEIPEQAN QQGTERAKAMVKFCHSLDSTRTVTCGVDNPEGSVNCGFYAATDVPGFNYRVFLYEKLIDK LPQGFLLGSETSSAVSSRGVYKFPVEEKNMATYDDGQCSSYDVEKVSWGSYPDEDFAKQD DLPYSIGQFVWTGIDYIGEPTPYYSYWPSRSSYFAPVDLAGLPKDRYYLYRSVWNTSSPT LHLLPHWTWHGREGKVTPVYCYTSYPEAELFVNGKSQGRIKKNKASKLDRYRLRWNNVVY EPGELKVVAYDEKGDEVAQQTIHTAGAPHALKIEVDKQQLANDGKDLLYYTISMVDKDGN LCPDANDLLLFEVSGAARFKAVCNGDATSLEPFHLPNMHLFHGKLVVTVQSNGMKGQVHL TVKAPKLGFGARHTL >gi|281305060|gb|ADEF01000047.1| GENE 7 6298 - 6429 63 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTQYAPNALRHFRYKEKRGEIGTPFLNNLFFPSIACAVRRILI >gi|281305060|gb|ADEF01000047.1| GENE 8 6473 - 7795 1002 440 aa, chain - ## HITS:1 COG:TM0306 KEGG:ns NR:ns ## COG: TM0306 COG3669 # Protein_GI_number: 15643075 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-L-fucosidase # Organism: Thermotoga maritima # 31 384 8 390 449 120 27.0 7e-27 MNQLFSLALALCLSVSAFAQSETTTTKAHDYQPTAENMASRQAFQDAKFGIFLHWGLYSM LATGEWTMTNKNLNYKEYAKLAGGFYPSRFNAAAWVSAIKASGAKYICFTTRHHEGFSMF KTRYSDYNIVDATPFKRDILKELADECHKQGIRLHLYYSHIDWYREDAVWGRTGRGTGRP NPQGNWQRYYAFMNNQLTELLTNYGKIGAIWFDGWWDQQPDFDWQLEGQYQLIHRLQPAC LVGNNHHTTPFQGEDIQIFERDLPGENNAGLSGQDISRLPLETCETMNGMWGYKITDQDY KSDTTLILYIVKAAGMNANLLMNIGPQPDGELPAVALERLQKVGQWMKVYGETIYGTRGG MVKPHDWGVTTQKDNRLFVHILNLHDRSLLLPIGKQRIKKAFVYDTKQPVKVERCQTGVV LTLPTALSKDCIDKIIEVQF >gi|281305060|gb|ADEF01000047.1| GENE 9 7815 - 10478 2504 887 aa, chain - ## HITS:1 COG:MA0523 KEGG:ns NR:ns ## COG: MA0523 COG0249 # Protein_GI_number: 20089412 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Methanosarcina acetivorans str.C2A # 8 885 5 900 900 621 39.0 1e-177 MAQKDKGLTPMMKQFFSMKRQHPDALLLFRCGDFYETYGDDAIEGSRILGITLTKRNNGG NSGETAMAGFPHHALDTYLPKLIRAGKRVAICDQLEDPKKKREELKGKKGLSATDKMVKR GITELVTPGVAMGDNVLNYKENNFLAAVHFGKAACGVSFLDISTGEFLTGEGTYDYVEKL LGSFAPKEVLYDRNDKRNFDTHFGTKYCVFELEDWVFTEQSARQRLLKHFGTKSLKGFGV EHMKSGIVASGAILQYLEITQHTNIGHITSLARIEEERYVRLDKFTIHSLELIDTMQEGG RSLLNIIDKTITPMGGRMLRRWMVFPLKDVTPIQQRLDVVDYFFKAPDFRQLVGEQFQRI GDLERIISKVAVGRVSPREVVQLKNALQALQPVKAACMKASNESLRRIGEQLQLCETIRD RIEHEIQPDPPLLVNKGGVIADGYDTELDELRQISRNGKDYLIQIQEREVERTGIASLKV GYNNVFGYYLEVRNMYKDKVPENWVRKQTLAQAERYITEELKAYEEKILGADERIMMLED KLFRELIVDMQPYIPQIQLDANLIAHLDCLLGFAQVAEENQYVRPQIDATDVLDIKQGRH PVIEMQLPLGETYVPNDIYLDAEKQQIMMITGPNMAGKSALLRQTALIVLLAQIGCFVPA ESAKIGLVDKIFTRVGASDNISLGESTFMVEMTEAANILNNVTNRSLVLFDELGRGTSTY DGISIAWAIVEYLHEQPRARARTLFATHYHELNEMEKHFPRINNYNVSVKEADGKVIFMR KLERGGSEHSFGIHVAEIAGMPRSIVKRSNEILRQLESDNSQVGSVGKPNLKHLEENREG MQLSFFQLDDPVLCQVRDEILGLDINNLTPMEALNKLNEIKKIIGAE >gi|281305060|gb|ADEF01000047.1| GENE 10 10882 - 10986 60 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQKCADLHKINVFSSWNMEIAPLETLFKCVIHIQ >gi|281305060|gb|ADEF01000047.1| GENE 11 11535 - 12932 733 465 aa, chain + ## HITS:1 COG:no KEGG:Slin_6168 NR:ns ## KEGG: Slin_6168 # Name: not_defined # Def: integrase family protein # Organism: S.linguale # Pathway: not_defined # 7 434 16 410 411 218 34.0 5e-55 MAQGNTTFGFELANHPNRFGFYPIMLRITRDRKKKRVKTGLEVKKSDWNQKAKNHKHFRS SYHNAEASNEMLADILSRYDSTYKELRKEGVASSENIIQKVKTGEVSESFLQYAKDRTQE IYDAGGVRNWKKYNGFCNKLETFLKKQKKHDISFSEITPSFLSKFDNFLHKLPNEREPEK LLHPNTIQVVLNIFKTIVNRVIEIDSKMKPEENPFLKFKYSGVKTIKDKLDEAELDAILA LDLPEGSLIWNCRNYFFFSFYCAGIRVGDFVQLRWCNITSEGRLHYQMGKNHKDRDLKLV PEALEILKHYYRDDVKPNEYIFPLLDLKSTWAKYVSQEEKDTMPPDMKMAMFTTISAKTA LINKELAKIGKLAGIEKKVSFHISRHSFAKMAKEKGVSSLEVKGLLAHTNLVTTEKYMGD LDTQKTDAALIKVFEKEDEADKVVEQLKGMRPEVLEEVLARLRSK >gi|281305060|gb|ADEF01000047.1| GENE 12 12995 - 13786 540 263 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881063|ref|ZP_06289751.1| ## NR: gi|282881063|ref|ZP_06289751.1| hypothetical protein HMPREF9019_0996 [Prevotella timonensis CRIS 5C-B1] # 1 263 1 263 263 471 100.0 1e-131 MEIREIRKEWIEDLFCEYGVKECKGVENSICEYINGFVRSLENDNPNRKLELAEMLYFIK GISDEIVINGLVVDPKKDELKNMDRKAHLNISTVKNDIEMMLTEKLRKEFGRLAYLETHY DEKGCADDDFYSKIEEGYFESEDFLKLPYKNEELEQIIKIGKKNEEIDKSFTKSRNIGAI CYMILRTFEENIMDDNSTTIKKYSLIYDIISLTGCIKKISTDKPYKGKMAKEKYDCVKNK INSFKSNLGALKDLNVWVVEITD >gi|281305060|gb|ADEF01000047.1| GENE 13 13991 - 14269 229 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881064|ref|ZP_06289752.1| ## NR: gi|282881064|ref|ZP_06289752.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 92 1 92 92 157 100.0 2e-37 MAMVVLPKSVWQGVKEDLQEVKELLTQKNTEEVENEWIESVKARKMLGVSPKTWQTYRDR RIIPFAQIGRKILVKKADLDAFMQEHYVSSSK >gi|281305060|gb|ADEF01000047.1| GENE 14 14282 - 14773 278 163 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881065|ref|ZP_06289753.1| ## NR: gi|282881065|ref|ZP_06289753.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 163 3 165 165 333 100.0 3e-90 MNDELMKVSLSEAIYEKKQGTATSYYWKSGSRILPNRVSIKNVEMAKVARKGRNLQHPFA GQFIATFTTKEESPLKLHKPYNVRTQIWQHEYYPQFIGYGTLGISDAEGRVTDKSDTGDL LVFFSKDADWQTIRIFIFAGMGKNPEHRDSAMIYANKLINDVE >gi|281305060|gb|ADEF01000047.1| GENE 15 14988 - 15794 466 268 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881066|ref|ZP_06289754.1| ## NR: gi|282881066|ref|ZP_06289754.1| hypothetical protein HMPREF9019_0999 [Prevotella timonensis CRIS 5C-B1] # 1 268 53 320 320 523 100.0 1e-147 MMKLEGSIPYYWQGNNFSFNRRQFVDAINHIEGLLNVDLWKSTINAFEFGVIMQVNMKPK EYIRHHYSSPKEKLELNEKPKDKGQFRWWSDKNVSLKMYDAGRNIQMKQGLERKKIITQS GWEEAGEYLKFEAHYLRPECLNRGRELYLYNLVNPDWHSIFKEDLYLHYKRLIPMKSIIT PTNKKDLTTADILIITMAEEAVNEGRTMEELKKLLYAKVNSIPDSVLTKSDKVFRKAQIK KLLNNIREADISIYDLSNELQKALEADN >gi|281305060|gb|ADEF01000047.1| GENE 16 16107 - 16295 255 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKELQQIKRLMDEMDVIISNYTELTTNTSEQKKFEELCIQVKQMLFEQAQEGLHDYLFTP NA >gi|281305060|gb|ADEF01000047.1| GENE 17 16400 - 16582 298 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881067|ref|ZP_06289755.1| ## NR: gi|282881067|ref|ZP_06289755.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 60 1 60 60 65 100.0 7e-10 MEITEQEYNDLKNKVAEQRLEIDRLKGKDEDEQVSAYLQHRKELDQERTAKLQAIKQSFV Prediction of potential genes in microbial genomes Time: Sat May 28 07:25:28 2011 Seq name: gi|281304873|gb|ADEF01000048.1| Prevotella timonensis CRIS 5C-B1 contig00046, whole genome shotgun sequence Length of sequence - 259810 bp Number of predicted genes - 200, with homology - 184 Number of transcription units - 121, operones - 48 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 46 - 195 79 ## - Prom 242 - 301 4.7 2 2 Op 1 . + CDS 826 - 1059 98 ## 3 2 Op 2 . + CDS 974 - 3361 2028 ## COG4206 Outer membrane cobalamin receptor protein 4 2 Op 3 . + CDS 3410 - 4651 1172 ## BF0627 hypothetical protein + Prom 4666 - 4725 1.7 5 2 Op 4 . + CDS 4745 - 5389 536 ## PG1181 TetR family transcriptional regulator - Term 5374 - 5418 -1.0 6 3 Tu 1 . - CDS 5476 - 6030 360 ## COG0110 Acetyltransferase (isoleucine patch superfamily) - Prom 6250 - 6309 8.4 + Prom 6096 - 6155 6.7 7 4 Op 1 . + CDS 6290 - 7006 694 ## COG0670 Integral membrane protein, interacts with FtsH 8 4 Op 2 . + CDS 7097 - 7720 431 ## BF0992 RNA polymerase ECF-type sigma factor - Term 7739 - 7784 1.1 9 5 Op 1 . - CDS 7790 - 10345 1794 ## COG1472 Beta-glucosidase-related glycosidases 10 5 Op 2 . - CDS 10423 - 12438 1235 ## BVU_1860 glycoside hydrolase family protein - Term 12453 - 12492 1.9 11 6 Tu 1 . - CDS 12593 - 13465 748 ## COG3568 Metal-dependent hydrolase - Prom 13488 - 13547 3.0 12 7 Tu 1 . - CDS 13569 - 15050 1009 ## Dfer_2403 RagB/SusD domain protein - Prom 15147 - 15206 5.9 - Term 15171 - 15230 0.5 13 8 Op 1 . - CDS 15363 - 18941 2413 ## Slin_4979 TonB-dependent receptor plug 14 8 Op 2 . - CDS 19009 - 20181 625 ## COG3712 Fe2+-dicitrate sensor, membrane component - Prom 20308 - 20367 5.0 15 9 Op 1 . - CDS 20860 - 21231 531 ## COG5496 Predicted thioesterase 16 9 Op 2 . - CDS 21231 - 22436 1034 ## PRU_1236 hypothetical protein 17 10 Tu 1 . + CDS 22764 - 23237 465 ## COG1438 Arginine repressor 18 11 Tu 1 . + CDS 23352 - 23531 244 ## PRU_1275 PspC domain-containing protein + Term 23670 - 23706 3.2 + Prom 23694 - 23753 7.7 19 12 Op 1 1/0.077 + CDS 23825 - 24379 625 ## COG1396 Predicted transcriptional regulators 20 12 Op 2 . + CDS 24393 - 26057 1605 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases + Term 26081 - 26117 2.2 - Term 26067 - 26104 6.2 21 13 Tu 1 . - CDS 26139 - 27326 1278 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes - Prom 27467 - 27526 7.9 + Prom 27347 - 27406 8.1 22 14 Op 1 . + CDS 27427 - 27519 72 ## 23 14 Op 2 . + CDS 27521 - 28477 1151 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 28513 - 28550 4.0 24 15 Tu 1 . - CDS 28580 - 29806 658 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) - Prom 29847 - 29906 1.7 - Term 29822 - 29863 4.0 25 16 Op 1 . - CDS 29912 - 30676 540 ## COG2908 Uncharacterized protein conserved in bacteria 26 16 Op 2 . - CDS 30727 - 31047 440 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme - Prom 31082 - 31141 3.7 27 17 Tu 1 . - CDS 31167 - 31949 793 ## COG0428 Predicted divalent heavy-metal cations transporter - Prom 32080 - 32139 4.1 - Term 32056 - 32112 -0.8 28 18 Tu 1 . - CDS 32166 - 32348 180 ## gi|282881094|ref|ZP_06289781.1| hypothetical protein HMPREF9019_1189 29 19 Op 1 . - CDS 32416 - 33195 891 ## COG2003 DNA repair proteins 30 19 Op 2 2/0.038 - CDS 33252 - 34304 832 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 31 20 Tu 1 . - CDS 34663 - 35229 632 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) - Prom 35399 - 35458 6.2 + Prom 35203 - 35262 4.5 32 21 Tu 1 . + CDS 35419 - 35574 216 ## PROTEIN SUPPORTED gi|150003118|ref|YP_001297862.1| 50S ribosomal protein L34 + Term 35607 - 35649 6.2 - Term 35725 - 35775 -0.5 33 22 Tu 1 . - CDS 35996 - 36106 102 ## + Prom 36111 - 36170 9.7 34 23 Op 1 . + CDS 36408 - 37247 825 ## PRU_2237 PASTA domain-containing protein 35 23 Op 2 . + CDS 37248 - 38315 864 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 36 23 Op 3 . + CDS 38334 - 39335 864 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 37 23 Op 4 . + CDS 39343 - 40494 887 ## BF0491 hypothetical protein 38 23 Op 5 . + CDS 40485 - 41141 327 ## PRU_2233 putative lipoprotein - Term 41220 - 41255 4.2 39 24 Tu 1 . - CDS 41282 - 42481 1277 ## COG0282 Acetate kinase - Prom 42665 - 42724 6.7 40 25 Tu 1 . - CDS 42801 - 43826 1202 ## COG0280 Phosphotransacetylase - Prom 43850 - 43909 6.6 - Term 44000 - 44044 9.2 41 26 Op 1 . - CDS 44121 - 45644 1629 ## BVU_1853 hypothetical protein 42 26 Op 2 . - CDS 45682 - 48819 2951 ## BVU_1847 hypothetical protein - Prom 48844 - 48903 9.1 - Term 49334 - 49366 -0.4 43 27 Tu 1 . - CDS 49551 - 50462 946 ## Slin_6012 helix-turn-helix type 11 domain protein 44 28 Tu 1 . - CDS 50648 - 51259 677 ## COG0164 Ribonuclease HII - Prom 51389 - 51448 5.7 + Prom 51234 - 51293 4.4 45 29 Tu 1 . + CDS 51390 - 51665 215 ## gi|282879386|ref|ZP_06288129.1| hypothetical protein HMPREF0650_0929 46 30 Op 1 24/0.000 - CDS 51666 - 52880 1030 ## COG0520 Selenocysteine lyase 47 30 Op 2 41/0.000 - CDS 52915 - 54258 1129 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 48 30 Op 3 41/0.000 - CDS 54255 - 55022 182 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 49 30 Op 4 . - CDS 55055 - 56506 1228 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component - Prom 56616 - 56675 3.6 - Term 56507 - 56547 0.4 50 31 Op 1 20/0.000 - CDS 56697 - 59633 3441 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) - Prom 59653 - 59712 4.2 51 31 Op 2 . - CDS 59750 - 61015 612 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 52 31 Op 3 . - CDS 61065 - 61532 582 ## BF0261 hypothetical protein - Prom 61705 - 61764 4.5 - Term 61604 - 61651 9.4 53 32 Tu 1 . - CDS 61891 - 63978 1682 ## BVU_1315 hypothetical protein - Prom 63998 - 64057 5.2 + Prom 64814 - 64873 9.3 54 33 Tu 1 . + CDS 65009 - 65821 179 ## PROTEIN SUPPORTED gi|229496933|ref|ZP_04390639.1| ribosomal protein L7/L12 domain protein + Term 65897 - 65933 -0.5 - Term 66438 - 66475 -0.6 55 34 Tu 1 . - CDS 66532 - 66738 214 ## gi|282879395|ref|ZP_06288138.1| conserved domain protein - Prom 66762 - 66821 6.2 - TRNA 66980 - 67053 82.5 # Asn GTT 0 0 + Prom 67102 - 67161 5.5 56 35 Tu 1 . + CDS 67229 - 68926 1740 ## COG0793 Periplasmic protease - Term 68955 - 69006 -0.3 57 36 Tu 1 . - CDS 69031 - 69420 241 ## COG3560 Predicted oxidoreductase related to nitroreductase - Prom 69616 - 69675 6.3 + Prom 69856 - 69915 2.7 58 37 Op 1 . + CDS 69935 - 70147 166 ## 59 37 Op 2 . + CDS 70162 - 72549 1624 ## gi|282881121|ref|ZP_06289808.1| putative lipoprotein + Term 72606 - 72663 18.0 + Prom 73003 - 73062 5.0 60 38 Op 1 . + CDS 73093 - 74103 627 ## gi|282881122|ref|ZP_06289809.1| hypothetical protein HMPREF9019_1219 61 38 Op 2 . + CDS 74100 - 75311 789 ## COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase) + Term 75416 - 75462 0.7 - Term 76181 - 76219 6.5 62 39 Tu 1 . - CDS 76294 - 78621 1455 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase - Prom 78641 - 78700 6.5 - Term 78826 - 78886 2.2 63 40 Op 1 . - CDS 78907 - 79386 449 ## BVU_0774 hypothetical protein 64 40 Op 2 . - CDS 79373 - 79843 462 ## BVU_0773 hypothetical protein 65 40 Op 3 . - CDS 79833 - 80342 420 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 66 40 Op 4 . - CDS 80376 - 80855 489 ## gi|282881128|ref|ZP_06289815.1| hypothetical protein HMPREF9019_1225 - Prom 80962 - 81021 3.4 + Prom 80628 - 80687 6.1 67 41 Tu 1 . + CDS 80878 - 81075 133 ## 68 42 Op 1 . - CDS 81062 - 83173 1982 ## PRU_2649 hypothetical protein 69 42 Op 2 . - CDS 83179 - 84681 1317 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 84745 - 84804 3.8 70 43 Tu 1 . - CDS 84905 - 86134 1090 ## COG2715 Uncharacterized membrane protein, required for spore maturation in B.subtilis. - Prom 86254 - 86313 7.2 71 44 Op 1 . + CDS 87014 - 87838 648 ## COG0657 Esterase/lipase 72 44 Op 2 . + CDS 87870 - 88949 662 ## BF1750 1-phosphatidylinositol phosphodiesterase precursor + Term 88975 - 89012 4.6 - Term 88905 - 88954 4.1 73 45 Tu 1 . - CDS 89046 - 90221 1211 ## PRU_2632 putative lipoprotein + Prom 90248 - 90307 8.4 74 46 Tu 1 . + CDS 90500 - 91015 287 ## COG3758 Uncharacterized protein conserved in bacteria + Prom 91082 - 91141 2.8 75 47 Tu 1 . + CDS 91241 - 91693 541 ## CLL_A3083 septicolysin + Prom 91987 - 92046 5.2 76 48 Op 1 . + CDS 92091 - 93911 1976 ## COG0018 Arginyl-tRNA synthetase 77 48 Op 2 . + CDS 93926 - 94396 290 ## COG3341 Predicted double-stranded RNA/RNA-DNA hybrid binding protein 78 49 Op 1 . - CDS 94551 - 95054 358 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 79 49 Op 2 . - CDS 95079 - 95954 504 ## gi|282881141|ref|ZP_06289828.1| putative lipoprotein - Prom 95986 - 96045 4.8 + Prom 95945 - 96004 9.4 80 50 Tu 1 . + CDS 96085 - 96462 199 ## COG0239 Integral membrane protein possibly involved in chromosome condensation + TRNA 96634 - 96710 75.4 # Met CAT 0 0 + Prom 97166 - 97225 6.0 81 51 Op 1 . + CDS 97261 - 97620 289 ## gi|282881143|ref|ZP_06289830.1| hypothetical protein HMPREF9019_1241 82 51 Op 2 . + CDS 97631 - 97780 62 ## 83 51 Op 3 . + CDS 97808 - 98032 142 ## 84 51 Op 4 . + CDS 98100 - 98690 287 ## gi|282881145|ref|ZP_06289832.1| hypothetical protein HMPREF9019_1243 85 51 Op 5 . + CDS 98711 - 99289 290 ## gi|282881146|ref|ZP_06289833.1| hypothetical protein HMPREF9019_1244 + Prom 99309 - 99368 2.8 86 52 Tu 1 . + CDS 99531 - 100181 362 ## gi|282881147|ref|ZP_06289834.1| putative lipoprotein + Prom 100183 - 100242 6.0 87 53 Tu 1 . + CDS 100363 - 100545 82 ## + Term 100571 - 100609 -0.4 88 54 Op 1 17/0.000 - CDS 100985 - 102382 1337 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 - Prom 102437 - 102496 2.4 - Term 102464 - 102507 2.4 89 54 Op 2 . - CDS 102508 - 103671 814 ## COG0743 1-deoxy-D-xylulose 5-phosphate reductoisomerase 90 54 Op 3 . - CDS 103709 - 104218 350 ## PRU_2926 16S rRNA processing protein RimM 91 54 Op 4 . - CDS 104211 - 105521 1166 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 92 54 Op 5 . - CDS 105526 - 106119 793 ## PRU_2928 hypothetical protein 93 54 Op 6 . - CDS 106170 - 106862 666 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone - Prom 106981 - 107040 8.3 + Prom 106722 - 106781 4.4 94 55 Op 1 8/0.000 + CDS 106955 - 107830 1019 ## COG1561 Uncharacterized stress-induced protein + Prom 107890 - 107949 5.1 95 55 Op 2 . + CDS 108017 - 109063 587 ## COG0194 Guanylate kinase 96 55 Op 3 . + CDS 109060 - 109635 412 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase + Term 109755 - 109791 0.5 - Term 110150 - 110196 -0.2 97 56 Op 1 . - CDS 110309 - 111625 841 ## BT_3898 TonB 98 56 Op 2 . - CDS 111692 - 112060 419 ## BT_3899 transcriptional regulator - Prom 112296 - 112355 9.1 - Term 112327 - 112361 -0.8 99 57 Op 1 . - CDS 112416 - 113927 1639 ## BVU_1702 hypothetical protein 100 57 Op 2 . - CDS 113983 - 116778 2533 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 117025 - 117084 5.3 + Prom 116991 - 117050 4.7 101 58 Tu 1 . + CDS 117101 - 118189 1031 ## COG0836 Mannose-1-phosphate guanylyltransferase + Term 118373 - 118417 2.4 - Term 118526 - 118572 4.3 102 59 Op 1 . - CDS 118729 - 119898 1100 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 103 59 Op 2 . - CDS 119923 - 122907 2151 ## CPE1875 hypothetical protein - Prom 122993 - 123052 6.6 - Term 123183 - 123211 -0.0 104 60 Tu 1 . - CDS 123217 - 126744 2497 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 126830 - 126889 4.2 - Term 126838 - 126886 9.1 105 61 Op 1 . - CDS 126943 - 128085 682 ## COG1519 3-deoxy-D-manno-octulosonic-acid transferase - Term 128112 - 128157 1.2 106 61 Op 2 . - CDS 128193 - 129731 1223 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 129846 - 129905 7.9 + Prom 129805 - 129864 12.9 107 62 Tu 1 . + CDS 130008 - 132059 558 ## PROTEIN SUPPORTED gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 + Term 132171 - 132217 8.6 + Prom 132173 - 132232 5.1 108 63 Tu 1 . + CDS 132303 - 133838 1093 ## BF1460 putative outer membrane protein precursor + Term 133865 - 133909 7.0 - Term 134495 - 134533 -0.4 109 64 Tu 1 . - CDS 134632 - 135588 460 ## COG1073 Hydrolases of the alpha/beta superfamily - Prom 135631 - 135690 7.7 + Prom 135667 - 135726 6.6 110 65 Op 1 . + CDS 135779 - 138412 1703 ## COG0474 Cation transport ATPase 111 65 Op 2 . + CDS 138409 - 139047 551 ## COG1011 Predicted hydrolase (HAD superfamily) 112 65 Op 3 . + CDS 139025 - 139975 423 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 113 65 Op 4 . + CDS 139976 - 140821 436 ## COG1266 Predicted metal-dependent membrane protease + Term 140823 - 140862 9.1 - Term 140809 - 140848 9.1 114 66 Op 1 . - CDS 140958 - 141446 499 ## PRU_2619 hypothetical protein 115 66 Op 2 . - CDS 141436 - 141948 428 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 141996 - 142055 4.1 116 67 Op 1 . - CDS 142117 - 144009 1555 ## COG1166 Arginine decarboxylase (spermidine biosynthesis) 117 67 Op 2 . - CDS 144031 - 144558 396 ## COG0703 Shikimate kinase 118 67 Op 3 . - CDS 144575 - 146902 1939 ## COG0550 Topoisomerase IA - Prom 147010 - 147069 10.0 - Term 147275 - 147333 5.1 119 68 Tu 1 . - CDS 147355 - 147885 352 ## COG1051 ADP-ribose pyrophosphatase - Prom 148117 - 148176 8.4 + Prom 148125 - 148184 5.5 120 69 Op 1 . + CDS 148238 - 151471 2746 ## BF0890 putative outer membrane receptor protein 121 69 Op 2 . + CDS 151484 - 153577 1924 ## BF4257 hypothetical protein + Term 153604 - 153661 12.7 + Prom 153680 - 153739 7.1 122 70 Op 1 59/0.000 + CDS 153956 - 154417 574 ## PROTEIN SUPPORTED gi|150004191|ref|YP_001298935.1| 50S ribosomal protein L13 123 70 Op 2 . + CDS 154426 - 154812 531 ## PROTEIN SUPPORTED gi|150004192|ref|YP_001298936.1| 30S ribosomal protein S9 + Prom 154882 - 154941 5.3 124 71 Op 1 38/0.000 + CDS 155058 - 155945 1091 ## PROTEIN SUPPORTED gi|212690772|ref|ZP_03298900.1| hypothetical protein BACDOR_00259 + Term 155975 - 156011 -0.7 + Prom 155979 - 156038 7.4 125 71 Op 2 . + CDS 156073 - 157065 277 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 157102 - 157144 8.7 + Prom 157929 - 157988 2.8 126 72 Op 1 . + CDS 158045 - 158662 554 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 127 72 Op 2 . + CDS 158716 - 162222 2224 ## PRU_2691 hypothetical protein 128 72 Op 3 . + CDS 162270 - 163445 1161 ## PRU_2690 hypothetical protein + Prom 163496 - 163555 3.9 129 73 Tu 1 . + CDS 163614 - 164105 360 ## COG0245 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase + Term 164280 - 164325 4.3 - Term 164268 - 164313 9.3 130 74 Op 1 . - CDS 164409 - 166313 1107 ## BT_3013 hypothetical protein 131 74 Op 2 . - CDS 166334 - 169417 1940 ## BF2942 hypothetical protein + Prom 169383 - 169442 4.6 132 75 Tu 1 . + CDS 169670 - 169894 102 ## - Term 169949 - 170010 9.6 133 76 Tu 1 . - CDS 170099 - 170491 438 ## Coch_0565 hypothetical protein - Prom 170525 - 170584 8.5 134 77 Tu 1 . - CDS 170831 - 173101 1754 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase + Prom 173358 - 173417 5.6 135 78 Tu 1 . + CDS 173446 - 173529 79 ## + Term 173563 - 173617 14.8 - Term 173261 - 173297 1.2 136 79 Op 1 . - CDS 173536 - 174447 742 ## COG0583 Transcriptional regulator 137 79 Op 2 . - CDS 174516 - 175922 745 ## COG2966 Uncharacterized conserved protein 138 79 Op 3 . - CDS 175936 - 177624 1323 ## COG2985 Predicted permease - Prom 177686 - 177745 5.3 + Prom 178443 - 178502 6.7 139 80 Op 1 11/0.000 + CDS 178528 - 179094 718 ## COG0450 Peroxiredoxin + Prom 179132 - 179191 3.5 140 80 Op 2 . + CDS 179252 - 180811 393 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 180903 - 180948 0.8 + Prom 180883 - 180942 4.4 141 81 Tu 1 . + CDS 180977 - 181450 584 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 181630 - 181667 -1.0 - Term 181610 - 181661 10.9 142 82 Tu 1 . - CDS 181827 - 182516 584 ## gi|282881202|ref|ZP_06289889.1| conserved hypothetical protein - Prom 182552 - 182611 8.4 + Prom 182491 - 182550 3.5 143 83 Op 1 . + CDS 182571 - 182750 147 ## 144 83 Op 2 . + CDS 182701 - 184185 1139 ## COG1524 Uncharacterized proteins of the AP superfamily + Term 184234 - 184298 26.1 - Term 184233 - 184274 5.0 145 84 Tu 1 . - CDS 184334 - 186046 668 ## PROTEIN SUPPORTED gi|39938628|ref|NP_950394.1| ribosomal protein L13 - Prom 186070 - 186129 3.9 + Prom 185912 - 185971 9.2 146 85 Tu 1 . + CDS 186088 - 187806 1247 ## COG1283 Na+/phosphate symporter 147 86 Tu 1 . - CDS 187872 - 188219 415 ## BVU_0576 hypothetical protein - Prom 188294 - 188353 6.9 - Term 188341 - 188395 -0.5 148 87 Tu 1 . - CDS 188498 - 189193 692 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 189380 - 189439 4.6 + Prom 189312 - 189371 9.2 149 88 Op 1 . + CDS 189425 - 190030 827 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 150 88 Op 2 . + CDS 190045 - 190917 1083 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 151 89 Tu 1 . + CDS 191039 - 191950 819 ## COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1 + Term 192021 - 192072 9.2 + Prom 192064 - 192123 6.6 152 90 Op 1 . + CDS 192212 - 192691 552 ## COG1522 Transcriptional regulators 153 90 Op 2 . + CDS 192688 - 194445 1324 ## COG2071 Predicted glutamine amidotransferases 154 90 Op 3 . + CDS 194509 - 195516 969 ## COG2234 Predicted aminopeptidases + Term 195587 - 195637 10.5 - Term 195334 - 195370 -1.0 155 91 Op 1 . - CDS 195429 - 195608 80 ## 156 91 Op 2 . - CDS 195683 - 197089 543 ## COG3344 Retron-type reverse transcriptase - Prom 197155 - 197214 2.9 + Prom 197530 - 197589 10.8 157 92 Op 1 . + CDS 197716 - 200784 2412 ## BF0868 putative TonB-linked outer membrane protein 158 92 Op 2 . + CDS 200800 - 202533 1491 ## BF0947 hypothetical protein 159 92 Op 3 . + CDS 202595 - 202837 66 ## gi|282881217|ref|ZP_06289904.1| hypothetical protein HMPREF9019_1316 160 92 Op 4 . + CDS 202887 - 203366 539 ## gi|282881218|ref|ZP_06289905.1| hypothetical protein HMPREF9019_1317 161 92 Op 5 . + CDS 203398 - 205146 1083 ## NT01CX_1473 tetanolysin O + Term 205167 - 205217 6.4 + Prom 205195 - 205254 5.2 162 93 Tu 1 . + CDS 205328 - 208552 2664 ## PGN_0561 trypsin like proteinase PrtT + Term 208576 - 208617 8.0 - Term 208785 - 208840 2.4 163 94 Tu 1 . - CDS 208861 - 209451 474 ## gi|282881221|ref|ZP_06289908.1| putative lipoprotein - Prom 209601 - 209660 5.3 - Term 210316 - 210366 1.2 164 95 Tu 1 . - CDS 210375 - 210992 756 ## PRU_2884 hypothetical protein - Prom 211062 - 211121 10.4 + Prom 211026 - 211085 9.6 165 96 Op 1 . + CDS 211141 - 213132 1275 ## PRU_2899 hypothetical protein 166 96 Op 2 3/0.038 + CDS 213211 - 213996 533 ## COG0726 Predicted xylanase/chitin deacetylase 167 96 Op 3 . + CDS 213993 - 214949 793 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 168 96 Op 4 . + CDS 214939 - 215364 265 ## BT_3390 hypothetical protein - Term 215155 - 215198 5.3 169 97 Tu 1 . - CDS 215309 - 216514 510 ## BDI_2811 hypothetical protein - Prom 216554 - 216613 11.4 170 98 Op 1 . + CDS 216867 - 218333 538 ## COG2194 Predicted membrane-associated, metal-dependent hydrolase 171 98 Op 2 . + CDS 218338 - 219117 730 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 172 99 Op 1 26/0.000 - CDS 219129 - 220298 833 ## COG0438 Glycosyltransferase 173 99 Op 2 . - CDS 220303 - 221109 582 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 174 99 Op 3 . - CDS 221155 - 221949 491 ## gi|282881231|ref|ZP_06289918.1| hypothetical protein HMPREF9019_1330 175 99 Op 4 . - CDS 221946 - 222917 571 ## COG1560 Lauroyl/myristoyl acyltransferase - Prom 223070 - 223129 2.2 + Prom 222949 - 223008 2.9 176 100 Tu 1 . + CDS 223032 - 224180 678 ## COG0438 Glycosyltransferase 177 101 Op 1 . - CDS 224705 - 226699 1578 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 178 101 Op 2 . - CDS 226730 - 228562 184 ## PROTEIN SUPPORTED gi|225084369|ref|YP_002657150.1| ribosomal protein S16 - Prom 228638 - 228697 3.9 + Prom 228608 - 228667 6.3 179 102 Tu 1 . + CDS 228837 - 229301 507 ## COG2030 Acyl dehydratase - Term 229368 - 229408 -0.9 180 103 Tu 1 . - CDS 229436 - 230227 511 ## PRU_2554 hypothetical protein 181 104 Op 1 . - CDS 230308 - 232359 1531 ## PRU_2555 putative lipoprotein 182 104 Op 2 . - CDS 232376 - 233911 1140 ## PRU_2556 hypothetical protein + Prom 234599 - 234658 5.6 183 105 Tu 1 . + CDS 234798 - 235448 616 ## COG0546 Predicted phosphatases - Term 235466 - 235511 -0.7 184 106 Tu 1 . - CDS 235585 - 236244 604 ## COG0035 Uracil phosphoribosyltransferase - Prom 236446 - 236505 7.0 + Prom 236361 - 236420 8.0 185 107 Tu 1 . + CDS 236489 - 238102 1599 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) + Term 238133 - 238177 10.5 + Prom 238159 - 238218 2.3 186 108 Tu 1 . + CDS 238245 - 239780 1216 ## COG3119 Arylsulfatase A and related enzymes + Prom 239835 - 239894 4.7 187 109 Tu 1 . + CDS 239944 - 242133 1737 ## COG3968 Uncharacterized protein related to glutamine synthetase + Term 242168 - 242214 9.0 - Term 242156 - 242202 7.5 188 110 Tu 1 . - CDS 242265 - 243953 260 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family - Prom 244080 - 244139 4.5 + Prom 244561 - 244620 5.4 189 111 Tu 1 . + CDS 244789 - 245031 167 ## + Prom 245060 - 245119 2.1 190 112 Tu 1 . + CDS 245196 - 245345 72 ## 191 113 Tu 1 . + CDS 245459 - 246433 875 ## COG1284 Uncharacterized conserved protein + Term 246512 - 246567 -0.2 + Prom 246481 - 246540 3.8 192 114 Tu 1 . + CDS 246646 - 247299 776 ## COG1592 Rubrerythrin + Term 247492 - 247528 -1.0 - Term 247792 - 247835 9.3 193 115 Tu 1 . - CDS 247865 - 249172 1726 ## COG0148 Enolase - Prom 249192 - 249251 5.2 + Prom 249579 - 249638 3.5 194 116 Op 1 23/0.000 + CDS 249674 - 251527 1847 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 195 116 Op 2 . + CDS 251524 - 252531 872 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit + Term 252577 - 252637 7.1 - Term 252790 - 252822 5.6 196 117 Tu 1 . - CDS 252845 - 254506 1278 ## COG2985 Predicted permease - Prom 254575 - 254634 7.5 - Term 254508 - 254553 -0.2 197 118 Tu 1 . - CDS 254733 - 256379 1230 ## BF3256 hypothetical protein - Prom 256401 - 256460 5.4 198 119 Tu 1 . - CDS 256521 - 258641 1453 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Prom 258710 - 258769 3.7 - Term 258737 - 258792 6.7 199 120 Tu 1 . - CDS 258801 - 259097 151 ## gi|282881255|ref|ZP_06289942.1| conserved hypothetical protein - Prom 259218 - 259277 5.6 + Prom 258945 - 259004 1.6 200 121 Tu 1 . + CDS 259069 - 259320 100 ## + Term 259421 - 259458 1.1 Predicted protein(s) >gi|281304873|gb|ADEF01000048.1| GENE 1 46 - 195 79 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEVSLKVCTFASAFENEAKMKHSSGRQKEAFFEKDLHKTEVVQEACMAF >gi|281304873|gb|ADEF01000048.1| GENE 2 826 - 1059 98 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MARKRKKDKSFSREFICRCINFKLVHLFFVNCFEFHSLFKTPQKPKKEKHGTPINTFFMP ATYLLHTMLAPRHKLQR >gi|281304873|gb|ADEF01000048.1| GENE 3 974 - 3361 2028 795 aa, chain + ## HITS:1 COG:YPO3910 KEGG:ns NR:ns ## COG: YPO3910 COG4206 # Protein_GI_number: 16124042 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Yersinia pestis # 127 298 34 206 625 74 32.0 8e-13 MEHLSTHSLCLLRIFYILCLLHATSYNANAQTHGTTILHGYVTDEQRHIPLSGASIEIIG TEKHAISNEQGRYVLPISEEGKFTIQVSYIGYKTKKTNVDLFVNKQDSICINIGLHANSN TLQGVTILGKNKIRQLKQSALPVSVIGKRQLEGTATNINDVLARTVGVTVRNTGGMGSAS RISIRGLEGKRMGMFVDESPLGGLNNFVALNDIPTSMIERIEVYKGIVPYKFGGSALGGA VNVVTKEYPPLYFDASYEISSFNTHQLSTVLKRTNQRTGLQFGIGGVYTHSDNDYDMVLD HLDGRTVKRTHDKFSKIIGGASVKATKWWFDELKWELIFTHTRQEIQGIDQYIREAFNKS QNIMTALKLQKENFFAPGLDLTFETLLSYGRYGMTDKAKCRYDWDGNQLPAVSPFGGEQG NHPSDGDNKSYDWSGKLNLNYLINAHHSLNLNVCANNTNMFPSDSLMDKALGFNANFHSR MTSTTIGLSYDLTLFNGRLQNAFTIKDFIYSSDSRSISTYSISEPKPVSCSKNFAGFSNA MRWKFSDELLVKASFNSEVRIPSTEELIGNGYSILPSPALKPERTTGYNIGLLYHKALKD GGMIEMELNSFYNTLKDMIRFTPDMIPTMARYRNFGEVQTMGIELEAKGDVLPMLYLYAN TTYQDLRDKRKMVPGTVVENPTYNMRIPNVPYFMANGGLEYHQENIFGGRGQNTRIMVEA SYIHQYYYDFEMSKYQERKIPTSMIVDAAIEHTLQNSTWSFTLKVKNIANRRVVSDLNCP LPGRSVAFKVRYLLK >gi|281304873|gb|ADEF01000048.1| GENE 4 3410 - 4651 1172 413 aa, chain + ## HITS:1 COG:no KEGG:BF0627 NR:ns ## KEGG: BF0627 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 413 1 407 407 271 38.0 4e-71 MKIKMLLSAIALTVLAASCGSDDNATPQSKKNTGANAFQGIVFATRVTNPEGNNGSMYMQ ALADMTPGKYNNKNAIPTGFGSTPIITPSGNLYSFPDYMGNSKAEITRYNIDAQGNFVQK GTLSIPAGAAASNVVELNDEKAYVSFQGLGKIMVFNPQTMKKLTEIDLNSLAHKDTKVAP AAMIIRDGMLFVGLNQFNAQWMPTSNTIELAMIDTKTDQVKKHITNTSLGMSFATRPIDA NSIFMDENKDIYFNCIGAFGFMPQLPGGIARIKNGSEEIDPTYCIRFDQTEVKGLSAKKG EFAATTFYGGKGKLYAYLNAYGLDPNAMSNPYLSMTNVPVEIDLYQKSITKIEGMEVGNP QGTAIGKHKNLIVFGSANKKANGFYTYNPETKEVKGPVLEVMGNPSFFYSFAK >gi|281304873|gb|ADEF01000048.1| GENE 5 4745 - 5389 536 214 aa, chain + ## HITS:1 COG:no KEGG:PG1181 NR:ns ## KEGG: PG1181 # Name: not_defined # Def: TetR family transcriptional regulator # Organism: P.gingivalis # Pathway: not_defined # 18 204 13 199 199 120 34.0 4e-26 MQTQKDEIKERIIAVARQEFIANGVKNTSMQRIASLSGIAVGNIYHYFKSKDHLFRCVIH PLFKAFEAYRQNANQSSYATLDTFRYDSYLESMKELVTSLVVPYRNELKLLLNEAANTSL HHTIDKMIEQQSIDGMNYIKRMKQQYPCINDQISPHFLRVLCNLWKEVIKEIVMHDNLTP KEQESLILDYVKFDVGGWKYMLNIQDTLDLETED >gi|281304873|gb|ADEF01000048.1| GENE 6 5476 - 6030 360 184 aa, chain - ## HITS:1 COG:all1011 KEGG:ns NR:ns ## COG: all1011 COG0110 # Protein_GI_number: 17228506 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Nostoc sp. PCC 7120 # 2 183 9 191 192 162 45.0 3e-40 MKTEFQKMRTEELYSFADPEIAASLAHAKELCRQLQTMTMDDEHYRDIIEQLIPGIPKSA TICPPFHCDHGHGIVMGEHTFLNYNCTILDGAYVRIGHHVLIGPNCQLYTPQHPMNYLER RLPQEVSHPISIGDDTWLGGGVIVCPGVHIGRRCIIGAGSVVVHDIPDDCLAVGNPAVIK KRLR >gi|281304873|gb|ADEF01000048.1| GENE 7 6290 - 7006 694 238 aa, chain + ## HITS:1 COG:CAC2831 KEGG:ns NR:ns ## COG: CAC2831 COG0670 # Protein_GI_number: 15896086 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Clostridium acetobutylicum # 23 237 15 230 231 181 52.0 8e-46 MEIKELEKLIREKEGSLSLAFPALMRKVYVWMTLALVITGITAYGVASSPNIMMWLVQKP AILWGLIIAELALVLTVSAAINRLSLTTATLLFVLYSVLNGVTLSLIFMAYTLTSIASVF FITAGTFGVMAAYGYFTKRDLTSLGKLLLMALIGLIIASVVNIFFVKSSGFDLIVSYIGV LIFVGLTAYDTQKIKQMLALQTDMGEGAQKIALMGALSLYLDFINLFLYLLRIFGKRD >gi|281304873|gb|ADEF01000048.1| GENE 8 7097 - 7720 431 207 aa, chain + ## HITS:1 COG:no KEGG:BF0992 NR:ns ## KEGG: BF0992 # Name: not_defined # Def: RNA polymerase ECF-type sigma factor # Organism: B.fragilis # Pathway: not_defined # 23 185 9 176 193 116 36.0 5e-25 MHKDGKNFQREHYWRLFVNSDSEENRAESFSSLYRLFVNELMAYGRGLGFETVSCEDGVH DVFCTLYSHRKRLKDVTNITAYLFKSFRNTLLNTYKQKAHISDMETTQIHFSTEVSVTDT LISEEQRQDVSKTVAKLLEGLTDRQREAIYLRYMHGMDYHDIALLMNMHPDSVRKIVYRA MTTLREKGKQLHNPLLSALITYWLATS >gi|281304873|gb|ADEF01000048.1| GENE 9 7790 - 10345 1794 851 aa, chain - ## HITS:1 COG:SPBC1683.04 KEGG:ns NR:ns ## COG: SPBC1683.04 COG1472 # Protein_GI_number: 19111852 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase-related glycosidases # Organism: Schizosaccharomyces pombe # 39 851 6 823 832 374 31.0 1e-103 MNYLRKTLYIVVVALISPLCMSAQTLPFQQKTLSPRERVNDLVGRMTLNEKIYMLQSDFF YRGCERLGIPCLETADGPLGVASWGLKGRATAFPSQLSLAASWNRDLAYRIGAIYAKEWK ARGIQVFYGPGVNIYRSSKDSRNFEYMGEDPYLASEMAVPFIQGIQQNGILATVKHFVAN DQEFDRYHVSSEVSERALQEIYYPPFKAAIQRAGVGAIMMGYNLVNGVYCAQNKQLMSDV LRRKWGFQGTIMSDWGATHSTLESVRAGLDMELGTFDYLNQRQLLPLIKFGAIKTSEIDS MVTHILLPCFRLGLFDKPVSRDLSVPTYNEEANQAAYEEACEGIILLKNNEGILPLKSPS SIAVIGPNANPNVVSDNCYDVKGCSYGGGGSSKVNPWYVVTDLEGIKKAFPQAQVSYHEG VSNAYKRRLFSNSVFTTSQGKRGLQACYVSLVDSGKVSTGTRSINQIDKQIDFRWEEGAS AVRSLGAAYQVEWKGVIASERNDSILIFVDAQGGYRLDVDGSTVIDKRHSQTFANQWVKI PSRKGRKHTVCLTYWNRNCHPAEIRMGWDYAHAVDYSEALDLARKADCVVFCGGLDASLE FEGTDRSFELPYGQDALIQALIKANPRTIVAMHGGGAMDMSAWIDKVPALLHMLYPGQEG GTALGQILSGKVNPSAKLPFTMERKWEDSPACGNYDETRMLRKVFYREGIYVGYRGYERK GIKPLFAFGHGLSYTTFAYDNLSLVVTDKKKGMVKVAFDITNTGRQDGAEVVQLYVHDPV AMVDRPYKELKNFAKVFLKAGETRHVEMLLRDDAFKYYHPKRHAWVLEHGKFDILVGASS ADVRLRGSIKL >gi|281304873|gb|ADEF01000048.1| GENE 10 10423 - 12438 1235 671 aa, chain - ## HITS:1 COG:no KEGG:BVU_1860 NR:ns ## KEGG: BVU_1860 # Name: not_defined # Def: glycoside hydrolase family protein # Organism: B.vulgatus # Pathway: not_defined # 9 667 49 716 717 461 37.0 1e-128 MPPEPKETFELSTEGDNVVVRANSLSAASVAVNYYLNQVCHQSISHCGDNRKPIDRVVSI AKPIRISTPFRYRYSLNYCTYNYSYAFYKWKDFERELDWMALHGINLMLAPLGMEKVWQE TLRAFDFGDNDIARFIPGSGYTAWWLMGNLEGWGGPMSQQMIDDRYKLQIKILRRMRQLG IEPVVQGFPGIVPSFLHDKYPKACVVSQGKWNGFQRPSILLPQSQLFYCMAKAYYDNMKR YYGTDLRYFGGDLFHEGGNAKGVDLSSTASKVQKCMLSHFPDAKWVLQGWNGNPSPALLA GLDKKHVLLINLAGEIDASWKQSDEFGQTPWIWGSVNHFGGKTDMGGQLPVLVEQPHRAL AASQHGRLKGLGILPEGIHTNPVVYDLALQTAWSDTVPSVDHLLRQYIWYRYGTWNDDLY RAWQLLASSVYGEFEVKGEGTYESVFCARPSLHVSSVSTWGPKKMQYQPEKLLQALVLFR KAAVHFKGSETYEYDLVDLARQVMANNARNVYNQVVHAYNEKDSLALNRYSSTFLHLIDL QDSLLSTNKFFLLGKWLQAARQYGENEQDQRQALVNARTLISYWGPDDATTRLHDYANKE WAGLLKQYYAPRWRAFFAMLAGQLRGRKPQTPDFFSMERTWAMNGGDEVMQPKGDYLLMV DSVIAAVTVNQ >gi|281304873|gb|ADEF01000048.1| GENE 11 12593 - 13465 748 290 aa, chain - ## HITS:1 COG:SMc01813 KEGG:ns NR:ns ## COG: SMc01813 COG3568 # Protein_GI_number: 15965006 # Func_class: R General function prediction only # Function: Metal-dependent hydrolase # Organism: Sinorhizobium meliloti # 44 290 33 265 285 66 29.0 7e-11 MIFNLLLALALSACSGADNNHANAVIDDGSEIIANDYKYIKSSGDIRIMTYNSFYCKANN GTPTFSDENTHRFASVIGALAPDVVAIQELDSSCVHRNKRYLLEEISKYTGIDYELFFGS AANFDGGRIGCGLLVKRSMQVDDVKFTPLPGDEPRMLIEAKFPKFTVFATHMDLNPMNRK ESAKLINNKAKKSVVPLFLIGDLNDSPTWKPEQSAFPELMQKFKIVSDASGSLPEQPGVT IDYVLLGQQHAEKIAVTGTHVVRRLSVKGEQLDLSTASDHYPVFADIRLK >gi|281304873|gb|ADEF01000048.1| GENE 12 13569 - 15050 1009 493 aa, chain - ## HITS:1 COG:no KEGG:Dfer_2403 NR:ns ## KEGG: Dfer_2403 # Name: not_defined # Def: RagB/SusD domain protein # Organism: D.fermentans # Pathway: not_defined # 3 493 101 575 576 441 48.0 1e-122 MYSKRCADEMARNEYNALAHFFRAFFYFEKIKRFGEVPWFDAPLSSTDAKLYELRTGRDE LMDHIRSDMDDAISFLPKEPNLYKVTKWSALALKSRIFLYEGTYRKYHHIAGSDKFLQLA VDAAQEFVQNAPYSIYAKGEKAYLSLFTSNKAIKDEVILARNYNIDINTIHNINQYFLSA GSKPGMNKKIVDSYLMNDGSRFTDKVDYKLMSFYDEMQGRDPRLSQTIVTPGYTRLNSEK LLSPNFNSTTTGYQIIKGVTSENADGWHKSHNDFPLFRAAEVYLNLAEAKAELGTLTQAD LDRTISKLRARVGMPPLTMATANANPDPYLMSAETGYPQVDGPNKGVILEIRRERTIELF GEGFRYDDLMRWKEGKAFEKQFRGMYVPALDPEKKFVVLDLNGNGKSDALDVCVYDGEQV PTENMYPELSGISTFLKLGDNIELEHGAKGGNIIVHDIRKKPRKWNEGRDYLYPIPQDQV TLYGGKLTQNPNW >gi|281304873|gb|ADEF01000048.1| GENE 13 15363 - 18941 2413 1192 aa, chain - ## HITS:1 COG:no KEGG:Slin_4979 NR:ns ## KEGG: Slin_4979 # Name: not_defined # Def: TonB-dependent receptor plug # Organism: S.linguale # Pathway: not_defined # 35 1192 19 1188 1188 867 41.0 0 MNLFKSMSHDLSPQRYQLSAKVMALAAILSFSGLQAAPAEAMNEQSLRVTLNVANMTVAD AISKIERSGGYVFVYNDDVRGELSNKVTLRSNNKQIDDVLRQLFASTNIAYRRTGRQVTL YKAEQRRASKEIPNSRHDREKQAVGYVVTGKVVDNAGEPVVGATVRVKGRNIATVSNVDG FFTIDMQDGKALDVSYVGYHSQTINKPKTKITVVLAEDNADIAEVVVVGYGVKKKANLIG AVSTVTADELKDRPVSSVGQMLQGQVPNLTITFASGTPGEATRMNIRGATSIVNSGAPLV LIDGVEGNIDRVNPNDIESISVLKDAASAAIYGARAGFGVILVTTKSNKDGQVHITYNGR YSWSAPTTKTSFMTCGYDAARLVDQFSMAMNNSSYTNYSKADYAELKARRYDQTENPNRP WVVVGPDGNYRYYGNFDWYHYIFDFKQPTWNHNLSISGGSNKFNFVVSANYNQRLGIFAI NPDRYNQKNFMAKVSSQLKPWLKLTSTSTLFRSDYAAPGYDFEDGGNFDNLWQHALPYVL PCNPDGSNVYTYSPSANKPTNGFVAMLREGKGFANVKKTQSCYAVNADFKISEDLHVIGN VSYKLSYKDKTTRQANMTYSEKPEKYDKATTIFFQNRLKESRSEEEYLVYDLYANYQKTF SSIHSLNIVAGVNHETGRYKNIEGNVKDLPMSLNDLFLGTGARGVKGGQHEYALLGYFGR LSYDCAGKYLAELNMRYDGTSRFPKQKRWGFFPSVALGWRMSDENFFSPLRDVVENLKLR FSIGSLGNQITDGRLNGNPYYPYIRKANIKQSNFLNYIADDKFFYYVDLAAPVSGSLTWE KIITTNVGLDLGILKNRLTATVDLYQRRTKDMLAASLTLPGVYGYSAPLENNGELRTNGY EITLSWNDRFILKGKPFYYGCSAALSDCQSKLVRYSGNQTKVLGKEYEGMEWGEIWGYKV RGIYQTEEDVRRRAVDQSFVSSRFTNGAGDLIFEDIDNSTKIDNGKGTLENHGDLVKLGN SLPRYQYSFTTHMSWNGFDLSLFLQGIGRQHFYPSGENFAFWGPYSRIYSSFIPADFVNR YWTKENPNSYFPRPAGGIARNGGVLTKVNNRYLQNLAYCRLKNFTIGYTLPGILTKKVSI EKIRFYFSGENMFTLSALDSNYLDPEQISGKGGSGNVYPYSKSFAFGLDVTF >gi|281304873|gb|ADEF01000048.1| GENE 14 19009 - 20181 625 390 aa, chain - ## HITS:1 COG:RSc2919 KEGG:ns NR:ns ## COG: RSc2919 COG3712 # Protein_GI_number: 17547638 # Func_class: P Inorganic ion transport and metabolism; T Signal transduction mechanisms # Function: Fe2+-dicitrate sensor, membrane component # Organism: Ralstonia solanacearum # 181 363 71 249 274 79 30.0 1e-14 MDTEEQMPKSYEDFLLAEDGSFVIWRLTGDSELGAHWEEYRQSHPELEQEIQKAIRVADS IRLNDFVYSEGETLLQNIQCSIAQQHKRQQWYRWVAVAAMLVLLALPLGYLALGRWGADQ VYQENLVAKAQGTDVVLTVGGKSVSVSSADPIVVSKGCVYGRDRMKPLLSGDRCNISVPY GKHVAMLLDDGSQLWVNANTQVEVPTRFGRTARDIRVNGEVYVDVVHQPSRPFTVYTKDM NVAVHGTSFGVSAYHDDSTPSVVLVKGKVTVQSTTGQSVAMSPNEQVRLVGNRMEKRGVD VRSYVSWKDNYLLFDNTPITEVFQQVGKYYGIVLTAVDSHAMQQNITGKLYLSNRVEGVL DAIALLTHATYIIHNSKVEFSKRTEKEPSM >gi|281304873|gb|ADEF01000048.1| GENE 15 20860 - 21231 531 123 aa, chain - ## HITS:1 COG:FN0889 KEGG:ns NR:ns ## COG: FN0889 COG5496 # Protein_GI_number: 19704224 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Fusobacterium nucleatum # 2 122 1 121 127 79 39.0 2e-15 MMLKEGLSHTSVLTVTEAYTAQALGSGDLPVLGTPAMLALMENAAMLAVANELDEGQTTV GGYLGASHVKPSKLGATVEATATLTKVDRRKLSFHVVAKENGEVIGEGEHLRFIVDRQRF MQG >gi|281304873|gb|ADEF01000048.1| GENE 16 21231 - 22436 1034 401 aa, chain - ## HITS:1 COG:no KEGG:PRU_1236 NR:ns ## KEGG: PRU_1236 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 47 391 29 373 373 423 57.0 1e-117 MKLVQLNAKWSLCLIGFCCFSLHLFGQSKRAMRERAMAKPEVALVGERLKKDWVKLTKAR LGLYYRQRTLTHNGVTMPLWWVTYGEKPADGYSLFISLHGGGGTTQETNNQQWENQKYLY RPQQAVYVAPRAPWNLWDMWCHEGIDPLYEQLIQMCVAFEGVNPDKVYLMGYSAGGDGVW RMAPRMADSWAAASMMAGHPGDVSLLNLRNTPFIIWCGEHDAAYNRNTLAAQRGLQMDSL QRHDPLGYVHQTHIIKGVGHWMNRVDSAAVPWMTKFRRNPYPKKIVWQQAEVVKPYFYWL GVPPAELAPGKMLRAYIQGNCVHITQCDYTALTLYLNDELVDLDKFVTVKYGKRVLFKGR LKRKESTMRQTLFERNDWSYMFPTSVTVTMKLKKANLKSKE >gi|281304873|gb|ADEF01000048.1| GENE 17 22764 - 23237 465 157 aa, chain + ## HITS:1 COG:BH2777 KEGG:ns NR:ns ## COG: BH2777 COG1438 # Protein_GI_number: 15615340 # Func_class: K Transcription # Function: Arginine repressor # Organism: Bacillus halodurans # 4 139 3 134 149 103 42.0 1e-22 MRFKNDRLEAIKLLISSQEIGSQKELLEALEAEGFIVTQATLSRDLKQLKVAKAASMNGR YVYVLPNETMYRRVQKPLPAREMMLTPGFLSIQFSGNIGVIKTRPGYASSIAYNIDNSNI PEILGTIAGDDTIMIVVKEGVQEFEIIDLLHELVFKM >gi|281304873|gb|ADEF01000048.1| GENE 18 23352 - 23531 244 59 aa, chain + ## HITS:1 COG:no KEGG:PRU_1275 NR:ns ## KEGG: PRU_1275 # Name: not_defined # Def: PspC domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 2 59 3 60 65 79 58.0 5e-14 MKKLTLSNDKKIGGVCGGIAEYFDLDKTLVRALYAVITLFTAFSGVILYILLWMILPKK >gi|281304873|gb|ADEF01000048.1| GENE 19 23825 - 24379 625 184 aa, chain + ## HITS:1 COG:MA2914 KEGG:ns NR:ns ## COG: MA2914 COG1396 # Protein_GI_number: 20091735 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanosarcina acetivorans str.C2A # 1 184 1 184 184 144 39.0 7e-35 MEESIKQIGQRLKGLREVLNIPAEEIAQLCNISTEHYKKIEAGEADPSLYRLTRISKHYG IALDVLLFGEEPRMSSYFITRKGQGMTVDRHQEYKFQSLASGFRGRKVDPFLVQVDPLPD NEKYNKNTHKGQEFDIIIEGTLEITIEDKVLVLQPGDSIYFDSSKMHCMRAVNDEPCRFL CIVI >gi|281304873|gb|ADEF01000048.1| GENE 20 24393 - 26057 1605 554 aa, chain + ## HITS:1 COG:MA2912 KEGG:ns NR:ns ## COG: MA2912 COG0365 # Protein_GI_number: 20091733 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Methanosarcina acetivorans str.C2A # 1 552 7 560 560 658 55.0 0 MVERFLTQISFTSEEDFKANLHFKVPENFNFAYDVMDVWAEERPDKLALLWTNEQGAELR FTFQDLKEQTDQTAAYFQSLGIGHGDKVMLILKRHYQWWLAMLGLHKLGAVAIPATHMLT THDIIYRNQRASVKAIVCADDTYIIEQIRAALPKSPTVETVISIGETVHPDFHNWEKEWK QAPPFVRPKYVNTNEDTMLMYFTSGTSGEPKMVAHDFLYALGHITTGVYWHNLQEDSIHL TVADTGWGKAVWGKLYGQWFAGAVVFVYDHEKFNAPSLMRQMEKYHITSFCAPPTVYRFM IREDFSKYDLSALRYCTTAGEALNPAVYQKFFQLTGIQLMEGFGQTETTMTLGTFPWQTP KPGSMGKPNPQYDVQLLRSDDTQCEDGEKGEICIYIGNKKPIGLFKGYYRDQNLTLKIWH HGYYHTGDMAWRDQDGYYWFVGRSDDVIKSSGYRIGPFEVESALMTHPAVVECAITGVPD DIRGMVVKATVVLADEWKSKADDTLIKELQNHVKHETAPYKYPRVIEFVDELPKTISGKI RRVEIREKDNQKKS >gi|281304873|gb|ADEF01000048.1| GENE 21 26139 - 27326 1278 395 aa, chain - ## HITS:1 COG:YPO0059 KEGG:ns NR:ns ## COG: YPO0059 COG0156 # Protein_GI_number: 16120412 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Yersinia pestis # 7 394 12 402 403 483 60.0 1e-136 MYGKMKEHLSQSLEKLREAGLYKEERIIESPQDAAIQVKGKEVLNFCANNYLGLSNHPRL IEASKKMMDRRGFGMSSVRFICGTQDAHKELEAAISDYFKTDDTILYAACFDANGGLFGA LLTDEDAIISDSLNHASIIDGVRLCKAKRYRYANANMEELEKCLQEAQAQRFRIICTDGV FSMDGNVAPIDKICDLAEKYDALVMVDESHSAGVVGATGHGVSELTDTYGRVDIYTGTLG KAFGGALGGFTTGRKEIIEMLRQSSRPYLFSNSLAPGIIGASLEVFKMLKESNSLHDHLV ENVEYFRDKMMEAGFDIKPTQSAICAVMLYDAPLSQKYAAKLLEEGIYVTGFYYPVVPKG EARIRVQLSAAHTREQLDKCIAAFIKIGKELGVLK >gi|281304873|gb|ADEF01000048.1| GENE 22 27427 - 27519 72 30 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQILSLSCVIVKKKLLFCKQNLLELTLKNK >gi|281304873|gb|ADEF01000048.1| GENE 23 27521 - 28477 1151 318 aa, chain + ## HITS:1 COG:SA0511 KEGG:ns NR:ns ## COG: SA0511 COG0451 # Protein_GI_number: 15926231 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 315 1 314 321 320 50.0 2e-87 MKNILVIGSTGQIGSELTRELRKNYGNENVVAGYIPGAEPTGELKESGPSAIADVTNPQQ IAEVVKSYHIDTIYNLAALLSVVAESKPRLAWKIGIDGLWNILEVARENHCAVFTPSSIG SFGPTTPHDMTPQDTIQRPKTIYGVSKVTTELLSDYYYHKYGVDTRAVRFPGVISYVTPP GGGTTDYAVDIYYNAVRGDQFVCPIQAGTKMDMIYMPDALKAAMMIMEANPDKLIHRNAF NIASMSFDPEEIYAAIKKYKPEFEMVYQVDPLKQSIAESWPNMMDDTCARNEWQWKPTYD LDSMTKDMLEKLTIKLGC >gi|281304873|gb|ADEF01000048.1| GENE 24 28580 - 29806 658 408 aa, chain - ## HITS:1 COG:MA2647 KEGG:ns NR:ns ## COG: MA2647 COG0641 # Protein_GI_number: 20091470 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Methanosarcina acetivorans str.C2A # 11 403 9 396 446 392 46.0 1e-109 MEIATPFSHPLYVMTKPVGASCNLACEYCYYLEKSKLYQGDVRHVMSDELLEKFVKQYIE SQTMQHIMFCWHGGETLMRPLSFYEKVVKLQWQYGQGKHIDNTIQTNGTLIDDRWARFFH NHGWLVGVSIDGPQEFHDEYRRSRTGKPSWHEVMRGIRCLEKYAVDWNAMAVVNDFNADY PLEFYQFFKDLGCHYIQFTPIVERILPHGDGRHLASMADGGEGQLADFSVSPEQWGHFLC TIFDEWVRNDVGKTFVQLFDVTLANWMGVDGSLCTMAKQCGHAGVMEYNGDVYSCDHFVF PAYLLGNIKDKTLTEMMYSERQRAFGQNKYLSLPQQCKQCTYLFACYGECPKNRFSTTEQ GEPGLNYLCKGYYQFFEHVAPYMDFMKGELEAHRPPANVMEAIRRGDL >gi|281304873|gb|ADEF01000048.1| GENE 25 29912 - 30676 540 254 aa, chain - ## HITS:1 COG:NMA0723 KEGG:ns NR:ns ## COG: NMA0723 COG2908 # Protein_GI_number: 15793700 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Neisseria meningitidis Z2491 # 1 240 1 230 240 76 28.0 5e-14 MKNVYFLSDAHLGSWAIDHRRTHERRLVRFLDSIKHRASAVYLLGDMFDFWNEYRYVVPK GYTRFLGKISELTDLGVEVHYFIGNHDIWTYGYLEQECGVILHRKPLTTEIYGKVFYLAH GDGLGDPDHKFQLLRKVFHNSICQHLFNAIHPRWGMWLGQTWAKHSRLKRKEGKELPYMG EDHEFLVQFTKQYMQAHDNVDYYIYGHRHIELDLMLSRQVRMFIIGDWITQFTYVVYDGE HIFMEQYIEGESQP >gi|281304873|gb|ADEF01000048.1| GENE 26 30727 - 31047 440 106 aa, chain - ## HITS:1 COG:CC1859 KEGG:ns NR:ns ## COG: CC1859 COG2151 # Protein_GI_number: 16126102 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Caulobacter vibrioides # 1 103 13 115 118 98 46.0 4e-21 MTLQEKTNIEEKIVDVLKTVYDPEIPVNIFDLGMIYKIDVKDNHTVDLDMTFTAPNCPAA DFILEDVRSKVESLDGITACVVNLVFEPAWDQSMMSEEARVELGFD >gi|281304873|gb|ADEF01000048.1| GENE 27 31167 - 31949 793 260 aa, chain - ## HITS:1 COG:lin0435 KEGG:ns NR:ns ## COG: lin0435 COG0428 # Protein_GI_number: 16799512 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Listeria innocua # 14 260 23 269 269 192 46.0 5e-49 MNSDILLILSMPLAGTVLGSAFVFFMKEQMSQLLQKALLGFASGVMVAASIWSLIIPSME QWADMGKWQVFPAAIGFAIGIAFLLLLDHITPHLHLGSVKPEGPRSRLSRTAMLILAVTI HNFPEGMAVGVVVAGVLQGDMGISIAAATTLSLGIAIQNIPEGAIISMPLKAEGKSKWYS FVMGSLSGVVEPVGSALVILLAALLTPTLPFMLSFAAGAMFYVVIEELIPEASQGEHSDW STIGFAIGFLLMMTLDVVLG >gi|281304873|gb|ADEF01000048.1| GENE 28 32166 - 32348 180 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881094|ref|ZP_06289781.1| ## NR: gi|282881094|ref|ZP_06289781.1| hypothetical protein HMPREF9019_1189 [Prevotella timonensis CRIS 5C-B1] # 1 60 1 60 60 84 100.0 2e-15 MKKYLFLFLLLVAICWLCNLVYYFFFQSDQLTLVHVMTWESFVFALLATGAIYFVNGGKK >gi|281304873|gb|ADEF01000048.1| GENE 29 32416 - 33195 891 259 aa, chain - ## HITS:1 COG:CAC1241 KEGG:ns NR:ns ## COG: CAC1241 COG2003 # Protein_GI_number: 15894524 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Clostridium acetobutylicum # 30 256 2 227 229 144 36.0 2e-34 MTVQRKHNGTEKVGSSSSQDKREEEATPPIPERLSIVHWAEADRPREKMERLGASALSPA ELLAILIGSGSVDESAVDLMKRLLNDCNNNLNTLGKQTIQELTNYKGIGPAKAITILAAC ELGKRRAMEKAEERADLSSALAIYEYMHPRMQDLDVEEAWILLMNQRYKLIKAMRISHGG ISETAVDVRVIMREAVLSNATVLALCHNHPSNQAFPSTEDDRLTKRIHEASQLMRIYFLD HIIVTDGRYYSYREEGRVL >gi|281304873|gb|ADEF01000048.1| GENE 30 33252 - 34304 832 350 aa, chain - ## HITS:1 COG:Ta1048 KEGG:ns NR:ns ## COG: Ta1048 COG0463 # Protein_GI_number: 16082079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Thermoplasma acidophilum # 4 232 7 217 256 89 29.0 1e-17 MKYSVIVPVYNRPDEVDELLESLCKQAFTDFEVLIIEDGSTCPCEEVCKKYEPFLDIKYL LKPNSGPGQTRNYGAERASGDYLIILDSDVVVPHDYFYEIEKELATSPADAFGGPDRAHA SFTDTQKAISYAMTSFFTTGGIRGGKKRLDKFYPRSYNMGIRREAFQQLGGFSKMRFGED IDFSIRIFKAGYKCRLFPHAWVWHKRRTDFKKFFRQVYNSGIARVNLYKRHPKSLKLVHL LPAVFTLGVIFLCFLMIFGLILWSESSSVAEGPNVGLILFLTGLLPLVLYCGAIVIDSSA KNESLKIGLLSVRAAFIQLFGYGLGFMSAWYQRCMRGRDEFHAFDKTFYK >gi|281304873|gb|ADEF01000048.1| GENE 31 34663 - 35229 632 188 aa, chain - ## HITS:1 COG:ML0522 KEGG:ns NR:ns ## COG: ML0522 COG0231 # Protein_GI_number: 15827184 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Mycobacterium leprae # 1 187 1 186 187 166 44.0 3e-41 MINSQEIKIGTCIRLDGKIWTCIDFQHRKPGKGNTVMITKLKNVSDGRVLERTFQINFKL EDVRVERRPYQYLYEDATGCIFMNQETFEQIPLPKEAVTGGDFMKEGDIVEVVTDTSDGS VLLAEMPVKTVLRITHSEPGIKGNTATNATKPATLETGVEVRVPLFVNEGELIQVDTRDG SYLSRISE >gi|281304873|gb|ADEF01000048.1| GENE 32 35419 - 35574 216 51 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150003118|ref|YP_001297862.1| 50S ribosomal protein L34 [Bacteroides vulgatus ATCC 8482] # 1 51 1 51 51 87 82 4e-16 MKRTFQPHNRRRVNKHGFRERMSTKNGRRVLANRRAHGRKKLTVSDENHGK >gi|281304873|gb|ADEF01000048.1| GENE 33 35996 - 36106 102 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIGKSTMIFSNKGVSLCWNIDLTLLETPFREVIHIQ >gi|281304873|gb|ADEF01000048.1| GENE 34 36408 - 37247 825 279 aa, chain + ## HITS:1 COG:no KEGG:PRU_2237 NR:ns ## KEGG: PRU_2237 # Name: not_defined # Def: PASTA domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 1 216 1 215 216 205 49.0 1e-51 MKSSEFLGKLKSFYLWGNLLAMLLVVLVMGIGVRYGLNWYTHHGEAIMIPNVKKKSFTEA ESILKQMGLKVVVSDTGYVKTLPPDCVLEQSPAAGEKVKAGRIIYLTINASKSPTITLPD VIDNSSLREAMAKLSAMGFKVGMPQFIPGEKDWVYGILVRGKHVAAGDRISIEDSLIIQA GNGMRDEADSVNYIDPVYPEYNDASDEDVDQFVEVSAPVEESAKPNQTPTKGETTQDAQK ETPAPKKSYPKNPQPAEPATPRKVKPSPQKTPVHTPKKD >gi|281304873|gb|ADEF01000048.1| GENE 35 37248 - 38315 864 355 aa, chain + ## HITS:1 COG:SP0929 KEGG:ns NR:ns ## COG: SP0929 COG0564 # Protein_GI_number: 15900809 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Streptococcus pneumoniae TIGR4 # 34 342 10 294 295 240 45.0 3e-63 MLEETNDISLIEDEDDQQLYEHFRVVVDKNQEPLRIDKYMFERLKHSSRNRIQKAADAGF VHVNDQPVKSNYKVRPLDVITLMLDAPQHDSTIEAEEIPLNIVYEDTEVMVVNKPAGMVV HPGAGNFHGTLINAVAWHLKDLPTFDANDPAVGLVHRIDKDTSGLLVIAKTPDAKTKLGL QFFNKTTHRSYHALVWGNFNEEEGRIEGNIARDPKDRLRMCVFPPDSAVGKTAITHYRVL ERFGYVTLIECILETGRTHQIRAHMKHIGHPLFGDERYGGMEILRGQRSSTYKAFIQNCL SLCHRQALHAKTLGFVHPKTNREMNFTSDLPEDMQQLLQKWRVYIHGTTIDTFDY >gi|281304873|gb|ADEF01000048.1| GENE 36 38334 - 39335 864 333 aa, chain + ## HITS:1 COG:HI1140 KEGG:ns NR:ns ## COG: HI1140 COG1181 # Protein_GI_number: 16273066 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Haemophilus influenzae # 3 330 2 303 306 166 31.0 7e-41 MKNLKRNIAIVCGGDSSEYDVSLRSAQGLYSFFDKERYHVFIVTIRGLDWNVCLEDGSTV KVDRNDFSFVHNGKSIIFDYAYITIHGTPGENGIIQGYFELVDIPYSTSGVLVEALTFNK FVLNRYLASFGVKVAKSILLRRGEESKLSEQEIEAQLGMPCFVKPVADGSSFGVTKVKNS DQLAPALRVAFMQNEAAMIESYMKGVELSIGCYKTSEKAVVFPATEVVTSNEFFDYDAKY NGQVQEITPARIADDTAKKVAEETSKIYDILHCNGIIRIDYIITKDEQGNDVVNMLEVNT TPGMTATSFIPQQVRAAGLDITEVLTEIVENQF >gi|281304873|gb|ADEF01000048.1| GENE 37 39343 - 40494 887 383 aa, chain + ## HITS:1 COG:no KEGG:BF0491 NR:ns ## KEGG: BF0491 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 6 381 5 380 382 428 54.0 1e-118 MHTPKEFDDIRPFEPEELPEVYNRLLDNQQFQRVLSYFYPDVPLEKIGARMRACTTNLAF QKVFGNEFVTFVLNRAAKSWDMNHSAISPEHNYTFMSNHRDIVLDSAILSKLLIDAEFKT TCEIAIGDNLLSLPWVKDLVRVNKSFIVKRSASFREMLTSSKTLSRYMHFAIQEKKENIW IAQREGRAKDSDDRTSESILKMMSMGGEGSIVERLTQLHIVPMTISYEYDPCDYLKAAEF QLKRDNPDWKKGPQDDIISMQTGIMGYKGHVHYHCSSCIDEYLQTLDSEMPKNELYATIV RHIDREIHRHYRLFPNNYIAHDLLTGKDEQTAHYQPADKVNFERYLSEQLEKITVPQPDI AFLRERILTMYANPLRNYWAACK >gi|281304873|gb|ADEF01000048.1| GENE 38 40485 - 41141 327 218 aa, chain + ## HITS:1 COG:no KEGG:PRU_2233 NR:ns ## KEGG: PRU_2233 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 14 211 20 219 226 133 33.0 4e-30 MQIKYWVLFALLGLFTACTINSYEKGDGRYSYLHAEMTEIHTSTKNKVDYAWTDEGKKLT FTVPFTCSWAHVPDSVYRAMLYYTQDEESTVGMTALHVWVLRPQKAPKRIPSDPVQLEGC WMSKSQQYLNIRIGVMTGTPEDTALQQKVGIVTQKNTHHANGKETHDLRLFHHQNNVPSY YARTFYISIPTDVYKKGDTLSLSVNTYRGWVKKSFALK >gi|281304873|gb|ADEF01000048.1| GENE 39 41282 - 42481 1277 399 aa, chain - ## HITS:1 COG:TM0274 KEGG:ns NR:ns ## COG: TM0274 COG0282 # Protein_GI_number: 15643044 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Thermotoga maritima # 1 396 1 398 403 468 59.0 1e-132 MNILVLNCGSSSIKYKLYNMTDESVLAQGGVERIGLDEAFVKVTLPNGEKKKIMHDMPDH KEGVNFVFSLLTDPEIGAIKSLNEIDAVGHRVVQGGDLYEKSTLVDKSVEDGIESLCDLA PVHNLGHLRGLRAVDALMPHVPQVAVFDNAFHSTMPDYAYLYAVPYAMYEKYHVRRYGFH GTSHRYVSQRVCEFLGKDIKDMRIITCHIGNGASVSAVKGGKCVDTSMGLTPLEGLMMGT RSGDIDASVVTFLMEKLHKTPQEMSDYLNKESGVLGITGISSDMRDIENAAAEGNKRAQL ALQMYDYRIKKYIGAYAAAMGGVDIIVWTAGVGENQIGTRLAACSNLEFLGVKMDAEANK VRGKEAIISAPDSKVTVCVIPTDEEIVIARDTMRLVNGK >gi|281304873|gb|ADEF01000048.1| GENE 40 42801 - 43826 1202 341 aa, chain - ## HITS:1 COG:CAC1742 KEGG:ns NR:ns ## COG: CAC1742 COG0280 # Protein_GI_number: 15895019 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Clostridium acetobutylicum # 1 332 1 330 333 317 53.0 3e-86 MDLLQQIVERAKADKQRIVLPEALEERTLRAADRVLADDIADIILIGNPTEIQKMAEARA LKNIDKATIIDPENNPKSEEYASLLAELRKKKGMTLEQARELVKNPLYLGCMIIKTEGAD GQISGALSTTGDTLRPALQIIKCAPGVTCVSGAMLLITQAKEYGENGVVVMGDVAVTPVP DVDQLAQIAVTTAETAKSVAGFKEPRVAMLSFSTKGSASHEVVAKVAEATKLAKQRAPQL KIDGELQADAALVPSIGQKKAPGSAIAGNANVLVVPNLEVGNISYKLVQRLGNAIAIGPI LQGIARPVNDLSRGCSVDDIYYMVAITACQAQDAKKEETSL >gi|281304873|gb|ADEF01000048.1| GENE 41 44121 - 45644 1629 507 aa, chain - ## HITS:1 COG:no KEGG:BVU_1853 NR:ns ## KEGG: BVU_1853 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 4 503 3 493 498 221 31.0 6e-56 MKNYIKVAAALAFTFGIVGCNLDPEVSEYETQQRHEELIANLETQAGVAKAATAKIYTLF QEPYSTHDDFGLKAFQIATDMMCEDVAYQNWAWFQFDYQIDNRMENYRRTRSTWGQFYEI IAKVNLNLETYFAQESTDPGVLAAKGEALALRGIAYFHLINFYQHTYKGHETALGVPLAL KSTDQNLPRATVQEVYKQIIEDLTFAVKNCKNTGVRTDADRAVAAAYLAKAYAQMEDWPN VETYAKIAAEGGTDKVTEPARGWDVGQEDILWGYDVNSQNSSLWASYWSHMDHFLARGYA AGGATKLIYNYLYNQIPKTDSRRKLWINKEEYPDVATSMIAQSHNSEMSSMEDLDEFEQV KFIAGEAGMEQDYCFIRVQDPILLEIEALVEQNKLADAQRELNAFVKKRNPAFQAPSTQD ALRKEVRFQRRIELWGEGTNWFDMKRWKETIDRTNGYKVTGKDGKEVEIPSNHEASVQLK MATDAKEFLHQLPVKEINANPNLKQNP >gi|281304873|gb|ADEF01000048.1| GENE 42 45682 - 48819 2951 1045 aa, chain - ## HITS:1 COG:no KEGG:BVU_1847 NR:ns ## KEGG: BVU_1847 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 88 1045 1 958 958 712 41.0 0 MEKRLTLFLACLFLSIGMAMAQTQINGTVISADDGQPVVGASVIVQGTKNGTATNIEGKF TLSVPTGAKLMVSYIGMVTKTVVATNNMTIRLVSDDSKLDEVIVVAYGTVKKSTYTGSAT NVDSKKLEKVQAADASKALEGMVAGLSVTSPSGRAGASTVMRIRGIGSLNASSSPLIILD GAPYSGEINAINSKDIESINVLKDAASAALYGARGANGVIMITTKSGNKGRVQVSFDARI GTNQRAVPEYDIITDPGMYYKLTWEGLKNSVTYAKKPVANPGQWASANLIGKLGYNVYNT PDDKVVDEKGNLTTAPIRYEDAANFNDWMGTLYEPKTREEYNLSVTKGSAKSKVYFSVGY LNDRGFSMKTKFERLTTRMSYDSDITDWLRIGASSQFAKTTAQNPAQFEEGNFSNLFMWS RMIAPIYPIYKHDKDGKILRDAHGEMVYDDSQSRLYAGGMNLIRQTQLNITKNVNYYLTQ NARVDVKLPYNFKFSSTATFNGNWWRLTNMMNPLVGDGQAYGGILNKEVNQTVSLNWNQI LKWDKTFNDFGVHVMLGHENYNEKTNFLSGEKKGLLDPTLPEFRSGANISDLDSYGREYK VEGYFGQVTADYMDKYYASASLRRDGSSVFHPDHRWGTFWSLGASWRINQENFLKDVDAI QNLKLRVSYGVQGNDYLYLPDTDPPLRAYTPYTNLYKIASTGTESVYGPAYKGNENITWE KNNNFDVGLEFSLWKGLIAGELDFFSRRTSDMLFNLPISSTTGFDSEPVNFGKMVNTGFE FNLSSNVYNDRNVNVNVGVNGTTYTNKITELPEQFREDGISKGFRILKEQGGIFDYYMVK SAGVNPENGDQMYWCWNKKTEQFEKVGSKDYSSSLKDRQFVGSALPKIAGGFYANAAAYG FDFSIQFSYRVGGKVYDDSYRQLMSSGTPGFNWHKDILNHWTPENTNTDVPRLHNQNQKL NQASDRFLIDGSYLSLNNLTLGYSLPKSVLNKAKIQGLRLYFAADNLGLWTKRKGLDPRI ALNGEQRYSVNSAVRALSFGINLNL >gi|281304873|gb|ADEF01000048.1| GENE 43 49551 - 50462 946 303 aa, chain - ## HITS:1 COG:no KEGG:Slin_6012 NR:ns ## KEGG: Slin_6012 # Name: not_defined # Def: helix-turn-helix type 11 domain protein # Organism: S.linguale # Pathway: not_defined # 10 290 11 288 297 107 30.0 4e-22 MRLDKFGNELDLLLLLTDNNNYTAQQLADQLHVSRRNLYYYLEYFRRSGFQVVKTGAYYR IDPSSRFFKRLHSNIALTVDEARYLRRLLENSHQKDMMTTLLKTKLDRYYGLEGSFSPTA LKRIHQHIRALKEAIASKNVVVLKGYSSPHSRTVSDRMVEPFLLMNDDMDVRCYEIQSGV CKTFKLARIQRIDTMDVFWMNEDKHREVFTDIFMFSGDQKLPIKLRLGQLAYNILIEEYP MAQPYVAPDKDGKHWIFKADMVSYLGIGRFVLGLFHDIEILHDAKFKQYIAQCIEQMQEK MKS >gi|281304873|gb|ADEF01000048.1| GENE 44 50648 - 51259 677 203 aa, chain - ## HITS:1 COG:NMA0075 KEGG:ns NR:ns ## COG: NMA0075 COG0164 # Protein_GI_number: 15793104 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Neisseria meningitidis Z2491 # 12 199 2 193 194 186 50.0 3e-47 MKHVLKSHYYPNLIEAGCDEAGRGCLAGSIFAAAVILPSDYDNHVLNDSKQLTRKKRNEL REVIMQAAVAWAVGEVSPQEIDEINILRASFLAMHRALDQLKVRPQAIIVDGNRFTPYHD IPYTTIVKGDAKYQSIAAASILAKTFRDDYMDRLAEEYPQYHWESNMGYPTREHRAAIQQ YGVTPYHRRSYNLLGNTELSLDF >gi|281304873|gb|ADEF01000048.1| GENE 45 51390 - 51665 215 91 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879386|ref|ZP_06288129.1| ## NR: gi|282879386|ref|ZP_06288129.1| hypothetical protein HMPREF0650_0929 [Prevotella buccalis ATCC 35310] # 1 89 9 97 99 90 53.0 3e-17 MEKNIMIQAEKTNQNEFAKKIARQLLSPLAWLRQYYEQVTERKLSLQETGWLLNAQLAFV MTVFPIEAPFATRLLCCLWLLHAVLKCKQFL >gi|281304873|gb|ADEF01000048.1| GENE 46 51666 - 52880 1030 404 aa, chain - ## HITS:1 COG:mlr0021 KEGG:ns NR:ns ## COG: mlr0021 COG0520 # Protein_GI_number: 13470346 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Mesorhizobium loti # 2 404 10 412 413 439 50.0 1e-123 MYDIISIRKDFPILSRKVYGQPLVYLDNAATTQKPLCVLDAMRDEYLNVNANVHRGVHWL SQQATELHEQARQTVQQFIHAKSPAEIVFTRGTTEGLNLVASTFAETFMQAGDEVILSVM EHHSNIVPWQLQAKKRGIVLKVIPMTDEGELIMDAYEELFTEKTKFVSITHVSNVLGTIN PVQQMIAIAHAHGVPVMVDGAQSTPHFAVDMQLLDCDFFVFSGHKAYGPTGVGVLYGKEE WLDRLPPYQGGGEMISHVSFDKVTFERPPLKFEAGTPDYIATHGLAVALDYLSHLGMENI AQHEQELTAYATHQLQQIDQLGIYGTSSAKDAVISFHVGDIHPMDIGTLLDRLGIAVRTG HHCAQPLMERLGILGTVRASFGLYTTKEEIDVLVAGIERVSKMF >gi|281304873|gb|ADEF01000048.1| GENE 47 52915 - 54258 1129 447 aa, chain - ## HITS:1 COG:mlr0020 KEGG:ns NR:ns ## COG: mlr0020 COG0719 # Protein_GI_number: 13470345 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Mesorhizobium loti # 3 416 20 409 430 174 28.0 2e-43 MKSEKQYIDLFTDAHAMICEHSSPVMNHVREQAFKDFKQQGFPSRKIERYRYTDINALFE PNYGLNLNRLEIPVDPYAAFKCDVPNLSTSLYFVVNDAFYTKALPKVGLPDGVKVLSLRE ASMEMPDLVAKYYGQIAKTQEDALTALNAMLAQDGLFIYVSKGVQMDRAVQVINLLRSDV DLMVNRRVLIVMEEGAQAKFLFCDHTIDDHRFLATQVIEAYVGENASLDLYCMEETHERN TRISNVYVEQQANSRFNHNVLTLHNGITRNQLQLVFRGEGAECVCNGCVIADKQQHIDNN TFIDHAVPHCVSRELYKYVLDDQATGAFAGRVLVEKDAQKTNSEMRNQNLCTTKQARMYS QPELEIYADDVKCGHGSTVGQLNDEAMFYMQQRGISQKEAKLLLEFAFINEVVDNIQLAP LKDRLHYLVEKRFRGELNKCAGCRNCQ >gi|281304873|gb|ADEF01000048.1| GENE 48 54255 - 55022 182 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 241 6 234 318 74 28 3e-12 SIQLKMLEVKNLHAEVDGKKILNGIDLCVKTGETHAIMGPNGSGKSTLSAVLVGNPLFKV TEGSITFNGKDLLAMAPEDRAHEGLFLSFQYPVEIPGVSMTNFMRAAINEKRKYQGLEPM SAGDFIKLMKERRKIVELDSKLSNRSVNEGFSGGEKKRNEIFQMAMLQPTLSILDETDSG LDVDALRIVAEGVNKLKTPETSTIVITHYDRLLDLIKPEVIHILYKGRIVKTGGPELAKE IEARGYDWIKAEVEE >gi|281304873|gb|ADEF01000048.1| GENE 49 55055 - 56506 1228 483 aa, chain - ## HITS:1 COG:SMc00530 KEGG:ns NR:ns ## COG: SMc00530 COG0719 # Protein_GI_number: 15965488 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Sinorhizobium meliloti # 10 483 9 489 489 685 65.0 0 MEEVNNRNNEYVRQVAEQKYEFGFTTDVHTEIIEKGLNEDVIRLISSKKGEPDWLLDFRL KAYRYWLTMKQPSWGHVTLPEIDYQGISYYADPMAKKPQNKEIDPELEKTFDKLGIPLEE RLILSGTAVDAIMDSVSVKTTFKEKLREKGIIFCSMGEAVKEHPDLVKQYIGSVVPYRDN FFAALNSAVFSDGSFVYIPKGVRCPMELSSYFRINARNTGQFERTLIVAEDDAYVSYLEG CTAPMRDENQLHAAIVEIIVMNNAEVKYSTVQNWYPGDKHGQGGVLNLVTKRGECRGVNS KLSWTQVETGSAITWKYPSCILKGDGSQAEFYSVAVTNNYQEADTGTKMIHMGKNTKSTI ISKGISAGHSQNSYRGLVRATANADNARNYSSCDSLLLGSQCGAHTFPYMDIHNDSAIVE HEATTSKISEDQLFYCNQRGIPTEQAVGLIVNGYAKQVLNKLPMEFAVEAQKLLSVSLEG TVG >gi|281304873|gb|ADEF01000048.1| GENE 50 56697 - 59633 3441 978 aa, chain - ## HITS:1 COG:CAC1802 KEGG:ns NR:ns ## COG: CAC1802 COG0532 # Protein_GI_number: 15895078 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Clostridium acetobutylicum # 342 976 36 691 693 540 47.0 1e-153 MSIRLNKALRELNIGLQTAVEFLEKKSELGEVKPELSFKLNDDQYGALVEAFKQDAEVRN QAEKIFQKKPKEKKRPSTPKEASSAPKDNRAEELLKTSSRQQYNPIGKIDLDSIGKTSAA KEPVAQDTTPQEPQVAQEPAPKPAAAVSSEPEKKETVKPEEAKVAQPAPAPEAPVQPETP QKEEKPAPKEAKPAPKKEKVKVEKPVEKQVQPKEEEVPQKETEVDDDAKNDGDELFQTKS ELKMQNAPKVNVLGKIDLSAINQSTRPKKKTKEERRKEREEKRGGRKKRVRINQERVDIN AASKQIGGNGGNNRPNSQESGRNANKKNNRKTRNKNYNQKPLEVNEEEVARQVKETLARL TSKGNQTKKGARYRKEKRDAIQERMSAEERAERKESKILKLTEFVTVSELASMMDVDVNK LIGTLMSVGLMVSINQRLDAETINLVADEFGFKTEYVSAEVQEAVAEEMDDENDLVSRAP IVTVMGHVDHGKTSLLDHIRNTNVIAGEAGGITQHIGAYNVKLENGRNITFLDTPGHEAF TAMRARGTQVTDIAIIIIAADDSVMPTTKEAIAHAQAANVPMVFAINKIDKPGANPDKIR EDLAQMNLLVEDWGGKYQCQEISAKKGIGVNELLEKVLLEADMLDLKANPNRRATGSIIE SSLDKGRGYVSTVLVSNGTLRVGDDIIAGTSWGRIKAMFNVRNQRIEEAKPAEPAIILGL NGAPTAGDQFHVLETEQEVRDIANKRMQLQREQGLRTQKRLTLSDVSHRIALGSFKELNI IVKGDTDGSIEALSDSFIKMSTEKINVNVIFKSVGQISENDVTLADASDAIIVGFQVRPS AAARKLAEQNGVEINTYSVIYNAIDDVKAAMEGMLDKVKKEVVTGQVEVKQVYKISKVGT VAGALVTEGKVHRSDKARVVRDGIVVHTAPINALKRFKDDVKEVATGFECGISLVNFNDI LEGDIIETFTEVEVKQTL >gi|281304873|gb|ADEF01000048.1| GENE 51 59750 - 61015 612 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 24 406 21 426 537 240 34 5e-62 MAARKSEEETISMIDTFREFKDTKNIDRATLVSVLEESFRNVLAKIYGSDENFDVIVNPD KGDFEIYRNRIVVADGEVEDENKEIALKEALEIEPDYEIGEEVSEPINFSKFGRRAILNL RQTLASKVLELEHDALYNKYKDRVGQIISGEVYQIWKREVLLIDDENNELILPKSEQIPS DQYRKGETIRAVILRVDNENNNPKIILSRTSPVFLERLLEAEVPEINDGLISIKRIARMP GERAKIAVESYDERIDPVGACVGVKGSRVHGIVRELCNENIDVVNYTSNIKLLVQRALSP AHISSINIDEENHKAEVYLKPEEVSLAIGRGGLNIKLASMLTEYTIDVFREVSDADADED IYLDEFDDEIDQWVIDAIKSIGLDTAKQVLNAPREMLIEKADLEEETVDNLIKVLKAEFE Q >gi|281304873|gb|ADEF01000048.1| GENE 52 61065 - 61532 582 155 aa, chain - ## HITS:1 COG:no KEGG:BF0261 NR:ns ## KEGG: BF0261 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 155 1 155 155 187 67.0 1e-46 MIDKSVVKAVVEEWLQDKEYFLVDIEVSPDDKIVVEIDHVDGVWIEDCVELSRYIESRLS RDEEDYELEVGSAGLGQPFKVPQQYINFIGKEVEVLDRDGKKVQGTLKSVDGNDFVVAVD EKVKIEGKKRPEIQSVDHAFQMDQVKYTKYLISFK >gi|281304873|gb|ADEF01000048.1| GENE 53 61891 - 63978 1682 695 aa, chain - ## HITS:1 COG:no KEGG:BVU_1315 NR:ns ## KEGG: BVU_1315 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 6 694 3 689 690 454 37.0 1e-126 MKYLITVILFLSVQNLSAQLANDNDSIDINKWYKNLPEVIVKAEKPIVKLVQGKMVYNMH NLLEKLPADNAYEALTRIPGVSDATGSISLLGNEVTLIINGQATTLTQEQLAERLKAMSA AQLAKAEVMLSAPARYHVRGMAINIVMKDNAGTNRLSGQMVGGLQQSKYSTGFGNLALSM QRGKFGLDANYQFVDGNSYRESSLIANHPLGNKRVGYYDETWQKSFGIRHYYRLGMNYAF NKNHHLDIAYTGNWKKNSSNNQTTGLSVSRTHHDSHVYLHNVDVNYSLPFGLTLSGSYTY YRTPQQQWLDGTMQVNANTTETKRNLTSSSEQTINKWMFTADQTHSLAHGWGVSYGVKGQ FASNKSYQSTLDKKGNILPNATSSVDINERIWNMYAGFSKQVNKAISFEASVAAEQYHSP MWNKWCIYPTLNALWSINDNHLLNLSFNSNSVFPSYWSTMSNVFYSSTYTEIHGNPDLKP YSCYNVNLMWQIKRRYTLMAFANLRPDYFVQLPYQTADRMAVIMKETNFDYSNRFVLQAS VIFSAGKWLSGNVFVAGTYKHDKSSRFFDLPFNRKKLYAILGGTASVKLCKTQDLRLILN PFFQSKAIQGVYDISPIFQMNAKLQWSSHDGKWGLRLNGNNIFNNKYDTRSVQGNQNFRM KLNNNWSTVTFAVVYKFGGYKEKKVKEVDTSRMGH >gi|281304873|gb|ADEF01000048.1| GENE 54 65009 - 65821 179 270 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229496933|ref|ZP_04390639.1| ribosomal protein L7/L12 domain protein [Porphyromonas endodontalis ATCC 35406] # 1 244 1 265 290 73 29 8e-12 MKFKTLHTLLLIIAATLWTGRINAQQLEIDNNAVNIANDATLTGAWLKSGTVSWNAATKT LTLDNAKIENGTGYYTLLVSGLNITIKLIGNNDINATSMDAIRLINSKTTITGSGTLKVN AGFNSVYLHHDATLTIDGCTVDIDGKLQGWNLGDEEDKNNHLVVKNATLKATSVNRLSSI TLTACKMQSPDGGKIDGNEFGKFVATADGSEARNVVIVPDKTASIAHTNVENGYEIKTIY SMDGHLQPALGKGINIVRTSDGKTFKVLKK >gi|281304873|gb|ADEF01000048.1| GENE 55 66532 - 66738 214 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282879395|ref|ZP_06288138.1| ## NR: gi|282879395|ref|ZP_06288138.1| conserved domain protein [Prevotella buccalis ATCC 35310] # 1 67 1 67 68 112 91.0 7e-24 MTTLGFVLLIITWIIVGLATRARKHTPQDKWQREDKRKRLEEEYAQNLKVWQDCKEDMKR RLKSFFGC >gi|281304873|gb|ADEF01000048.1| GENE 56 67229 - 68926 1740 565 aa, chain + ## HITS:1 COG:aq_797 KEGG:ns NR:ns ## COG: aq_797 COG0793 # Protein_GI_number: 15606169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Aquifex aeolicus # 1 357 1 348 408 190 33.0 6e-48 MKKLLTSLLLVVILPTLTYGQEDKNHLFETAKNLEIFNTVYKNLDLMYVDTLDANEVIGD GIKGILNRLDPYTEYYPASETQELKRFISGKYGGIGALIRYHLQLKNAVIDEPYAQMPAA EVGLKKGDIILQIDDSTMVGKDTKYVSEHLRGEPGSTFLLKIKRPSTGKIMTFKVKRRSI QMPVIPFYGMLTTDIGYINLYQYYEDCAKEVRKAFIDLKKQGAKGMILDLRGNGGGSEQE AVDLVNIFVPKDVTIVTNKGKLKRANHAFKTRMEPVDTIMPLVVLVNNMTASSSEITSGS LQDLDRAVIVGTRTFGKGLVQMTMQVPYNGNMKVTTAHYYIPSGRCIQAINYKHKKGKTL NTQLPDSLTRVFYTKNGREVRDGGGIMPDVEIKPDTIANISAYLQHGDSTETMFNYVIDY IAKHKTIAPANQFELTDAEYNEFKQQVLKNKFTYDPGTEKMLKELEKIAKFEGYYEDAKP EFAALKKKLTHDVAKDLELNKNELKQIISADILTAYYFQGGAIQNGLKYDKQTKEAIRLL KNKEEYNQILSGAKSVTNKGTQNKH >gi|281304873|gb|ADEF01000048.1| GENE 57 69031 - 69420 241 129 aa, chain - ## HITS:1 COG:CAC3314 KEGG:ns NR:ns ## COG: CAC3314 COG3560 # Protein_GI_number: 15896557 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Clostridium acetobutylicum # 2 128 72 198 198 155 57.0 1e-38 MRIVPEKFAQTEQKINASFQSGYGTILYYEDQSVVRGLQEKFPSYADNFPIWSEQTNGMH QLTLWTALEDAGFGASIQHYNPLIDGVVAKEFQIHPDWKLRAQMPFGVPAAEPQEKTFEP LDKRLRFLK >gi|281304873|gb|ADEF01000048.1| GENE 58 69935 - 70147 166 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKRKKYLKPQIKVISLVSEMPFLVTVSGGQNSTISDFEHESHFASDICTNDQNHSCNQD YSEYEDDGEN >gi|281304873|gb|ADEF01000048.1| GENE 59 70162 - 72549 1624 795 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881121|ref|ZP_06289808.1| ## NR: gi|282881121|ref|ZP_06289808.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 795 1 795 795 1613 100.0 0 MKKKEGMMMRGFRLSGCVSVLFSLITLISCVDTIQMSEGGAVTVAKEARFTTICIDRASA RAILPQNETRAAVVMDDMFRLTEDNDFETDAYIIKADKDEEVEGSRKIGYLRIKWKSKEK YGKGWKLTTYEPNVEIEWLNFNGEELEVGSSWYICGIVGGNVDRNHNDAHNVDLPLSIGF GYDKDNKWNEPYGADGKKHLFQVPFVADWVKVDIKKKNTISFDKLSFEPQGVVFKLKIKR NEKLIDAQDHKYLFSSTGLTGNVFYSFQDHFQSSDVNQMRDVKVSHLNSVKNYNLWMWPS DQRELEKERTWQSNKAVIPSKKEYTTINAHEYRYRKELFGSENSGTEYDEFYVWGMPFSG GVKKHVYKYSKVKDGEKTISDSYDVKERNVTAVTSMYGGFMLGWLKGSNDFKDKKAVKGE FIVGDPLLNEITEIKDWNAYNGKVLEINLKVMRPGDSKYKWRVPLARFAKSNLSSTNPRE FTNDITPNSGQGAFPQQDPNMGIMTFSRIAQERIAPEGYRVPDIRELSGAFPYATSKVYP DGEMIKDKLEGEDLVIDNNSGVRLEGYFNEWLQLPLSDPDEKDIYNNKQQEAHLYTSIYK ICNVENVKPSIYKQDHRVIVYGIRFKHNYFTKNRDVTGNRYACAYRYVIHTDDRNNDGRG VRTSVTARWIGNLPISIDEVSKDDFWEHCKKLDVVRIFNDDGKSGRPKFKGGMLYPSITP NKALEHTNFDPYYVSGSGTYKYRSLDTSGFFRGNFTMTDIWFPVRCISKWNMSEFDKKAP RNQKITSGNKEDYYL >gi|281304873|gb|ADEF01000048.1| GENE 60 73093 - 74103 627 336 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881122|ref|ZP_06289809.1| ## NR: gi|282881122|ref|ZP_06289809.1| hypothetical protein HMPREF9019_1219 [Prevotella timonensis CRIS 5C-B1] # 1 336 34 369 369 647 100.0 0 MKQKLRNISRLKLIALVIALLFVITWVTWTCWPSSGQQMKRAVAVIESKSWYEIVCNGKK VLFFADISSDSSLNRLSVHRDSSTLTTYSTGVWLNRYAAIPSCHGRLVTIKTNVNKAVGI DACTLIRKEQARNQQRIRRLQSRLKELNYYLRIHNVHDEGYNTVAGYTDEIKNRAAHAKA LSSILDSIQKSKQIRIFHKTSYIAHYNNRKGERQHVYMVEINASAKQQTVLLQTTTQTTP TGAVPLSIMPWKAKANGDALAVGYGGLGIPELATENAHCCILSTVLHDRQHDLPTVLAGA GSPVFSSCGRLIGITQGKHVIDRTQLLDLFSKEGKP >gi|281304873|gb|ADEF01000048.1| GENE 61 74100 - 75311 789 403 aa, chain + ## HITS:1 COG:ECs2905 KEGG:ns NR:ns ## COG: ECs2905 COG3757 # Protein_GI_number: 15832159 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lyzozyme M1 (1,4-beta-N-acetylmuramidase) # Organism: Escherichia coli O157:H7 # 176 397 70 268 275 118 32.0 2e-26 MKIYFHSSLPTFVTLFVLSLCMSCSRIHPDVQVVSQQRGYTYRGTLVKGKYEGYGEMRYH GRVVYAGQWVGGKREGKGVSYDSCGQQIVGLWKANTLIHGTRTDSNGVYTGQLNQKGQPD GAGSYTSTDETYYHGYWLQGERSGFGFASSPKKLRLGEWKADRYLGERLVYTEQRIYGID ISRHQHEIGKKHYPIYWNQLRITHLGTISKKHIRGTVSYPISFCYIKSTEGTTIRNRYYK GDYRAAKRNGIHCGAYHFFSTLTSGKAQAKYFLRNTLFQKGDFPPVLDVEPYPSQIAKMG GVKVMFNEVRAWLQLVEKHVGVKPILYISQIFVNKYLPEAPDLMKNYNVWIARYGEYKPN VHLVMWQLSPDGRVKGIKGDVDINIFNGYQDSFEEFLRNERIK >gi|281304873|gb|ADEF01000048.1| GENE 62 76294 - 78621 1455 775 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 13 719 13 707 714 565 44 1e-160 MNVITKTVQLPDGRTISIETGKVAKQADGSAVVRLGNTVLLATVCAAKDAVPGTDFMPLQ VDYREQYSAAGRFPGGFTKREGKPSDNEILTSRLVDRALRPLFPSNYHAEVYVQIMLLSA DGVDQPDALAGLAASAAMACSDIPFDFYISEVRVARINGEYVVNPTFEQMKSADMDLMVG ATKDNIMMVEGEMNEVSELDLIEALKAAHEAIKPMCTVQEELNKELGKDVKREYDHEVND EDLRQQMNDELYQPAYDITKQALPKQERHDAFDKIIADFLEKYDAAHADLTEEELEEKHA EATRYYDDVLKNAMRRCILDEGKRLDGRKTDEIRPIWCEVSPLPMPHGSAIFTRGETQSL STCTLGTKLDEKMVDDVLDKSYQRFLLHYNFPPFSTGEAKAQRGVGRREIGHGHLAWRGL KGQIPEDFPYTVRLVSQILESNGSSSMATVCAGTLALMDAGVPMKKPVSGIAMGLIKNPG EDKYVILSDILGDEDHLGDMDFKTTGTRDGLTATQMDIKCDGLSFEILEKALMQAKAGRE HILGKMLETMPEPRSEMKPQVPRIEAFEIPKEFIGAIIGPGGKIIQQMQEDTGATITIDE LDGVGKIQVSAPNKEAIDSAIAKIKGIVAIPEIGEVYEGTVRSIMPYGCFVEILPGKDGL LHISEIDWKRLETVEDAGIHEGDKIKVKLLEIDPKTGKYKLSRKVLLEKPEGYVERERRP RPERRNNMNNERRPRRDDDNGYHHRNNGGYGDRPQRRFEHHDDNVDSVDNTSNDF >gi|281304873|gb|ADEF01000048.1| GENE 63 78907 - 79386 449 159 aa, chain - ## HITS:1 COG:no KEGG:BVU_0774 NR:ns ## KEGG: BVU_0774 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 15 157 6 148 152 112 41.0 6e-24 MKQDSNSLMPLKRILLVLILAMSSMYSVAQDQLFKQFDDAKGVSTVYISPTMFRLMPKLE FGDKDITKIASKLTKLQVLECERPSLIPTIKKQATNYYKTNKYEVVMKIKDKDERTTIYL KSYGKNNNEFILMNEEPKEITIIQLVGHITLSEIKNIAK >gi|281304873|gb|ADEF01000048.1| GENE 64 79373 - 79843 462 156 aa, chain - ## HITS:1 COG:no KEGG:BVU_0773 NR:ns ## KEGG: BVU_0773 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 153 1 152 176 96 35.0 3e-19 MESNELKKLVERFYEGQTTEQEEQLLQHYFLDGDVPPEWAVEQQLFKQLYQADVPVPEYL ERQLSQQIDGWNKIEKLSERKARTFTLRWIVGVAAGLLLLFSVALLVHFQQKEDEIAAQR EIVNNPQDAYAETEKALLKFSNTINKGLKQVENETR >gi|281304873|gb|ADEF01000048.1| GENE 65 79833 - 80342 420 169 aa, chain - ## HITS:1 COG:MT1259 KEGG:ns NR:ns ## COG: MT1259 COG1595 # Protein_GI_number: 15840665 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Mycobacterium tuberculosis CDC1551 # 15 169 93 248 257 65 27.0 5e-11 MDASQFKQCFLPCHEQLFRMAWRLTGNMQAAEDLVQETFLKLWMKRDELATIDSYEGFSV TILKHLFYDEQRKRRLQTTPQALEQLQIPHPDDMAGAFEEEDSERFIIKLIRQLPKKQQQ VMLLRDVEGLDYHEIEELTGQKAVHIRVLLSRARKQIRQQLKEMMQNGK >gi|281304873|gb|ADEF01000048.1| GENE 66 80376 - 80855 489 159 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881128|ref|ZP_06289815.1| ## NR: gi|282881128|ref|ZP_06289815.1| hypothetical protein HMPREF9019_1225 [Prevotella timonensis CRIS 5C-B1] # 1 159 1 159 159 243 100.0 2e-63 MKKVMMMAVLAFMAMSVQAQMSVDGLMKKYKNSPKAEYVHVPKVMITLAKAIKTGDADDY TKYLKHINSIKVLDMEDCSNAVKQQFFKDANQLKTAGYEVLMTAKEAKEQTVILAKRNKA GIKELVIVDSDDDDATLIQILGNIKNSEIQKIIAEEKKK >gi|281304873|gb|ADEF01000048.1| GENE 67 80878 - 81075 133 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLYDFKDTLPLRCSNLSDVENTDCVTNIEIFFRMMFLFVNTSGCQIVHDKAQRYKLSRHH NFTGR >gi|281304873|gb|ADEF01000048.1| GENE 68 81062 - 83173 1982 703 aa, chain - ## HITS:1 COG:no KEGG:PRU_2649 NR:ns ## KEGG: PRU_2649 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 703 1 707 707 974 66.0 0 MKKSTLLLAGLLAANVASADEGMWTLYNLPQAVYEQMQAEGFQMPYNDLYFSDHAIKNTV VNFSGYCSGVVVSPNGLVFTNHHCGFEGIRSHSTVEHDYMKNGFYAKSYEEELPNKDMFV SFMVEQKDITDKLRQLDFDNLTTERQNAILDSIQNAMSDSIKRIDKTLHIGIDAFYEGNT YYATTYRQFNDLRLVFAVPKSMGKFGGETDNWMWPRQTCDFSVFRIYADKNTNGPAEYSK DNVPYRPKYWAPVSLQGYKDGDYSMTIGYPGSTNRYLSSYGIRERRDALNTPRAQVRGVK QAIMTRHMRADEGVRIKYDSKFAQSANYWKNSIGMNKCIDSIGIINQKQQYEQKIRQWQQ QTGYLKGKLDFDTMARLYNQRLDVMKAFMFFRETFGRTNEFTNRAMQLNNKEILGPKNNP KKQYILFKDNSDEWDAALDKDVFAALLKNYQDKVEPKYLPKFYQTIAKKFGGDCKRYVEY LYEKSFLMKSGKRIYTNKKSYQRDPGVVYSLDLLEIMGQLSADKSQYEDSIALQEKYLCA AKLRMEEDMPHYSDANFTMRLSYGQVGGFLLGGKPSGYYTTAESMVEKMNRANEVYEYQA EPVMKEILSADNFGKYQDKHTGKMQLCFLTNNDITGGNSGSPMFDGKGRLIGLAFDGNWD SLSSDINFDTRLARCIGVDIRYVLLMMDRWGHADRLLQEINAQ >gi|281304873|gb|ADEF01000048.1| GENE 69 83179 - 84681 1317 500 aa, chain - ## HITS:1 COG:TM0620 KEGG:ns NR:ns ## COG: TM0620 COG2244 # Protein_GI_number: 15643386 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Thermotoga maritima # 3 458 4 439 479 80 20.0 7e-15 MSNLKSLVKDTAIYGLSSIVGRFLNYLLTPLYTIKLASASGEYGIMTNMYAITALILVIL TFGLETTFFRFANKSGENANRVYSSTLITVGAGVLGFFLLVLLFLSPIASFMGYAQHPSY IWVMALTVAIDSFLCIPFDYLRFKSRPIKFASIKVFIIVLNISLNLVYYLLFPALYASHP ELMSHIYQPSVGVGYAFYINLACSALTIPLLWKELTSVPYHFDAALMRRMLSYSWPILVL GLAGILNQTADKILFPHIYKGDDSLMQLGIYGAASKIAMIMAMITQAFRFAYEPFVFGKS EEQDNRATYAKAMKYFIIFTLLAFLVVVGYLDVLRYLIGKDYWAGLQVVPIVMAAEMMMG VYFNLSFWYKLIDKTIWGAYFSGIGCAVLIAINVIFVPRYGYIACAWAGFTGYGVAMILS YVVGQRKYPINYPMKSIFKYVALAVVCFAAMTLFNQMLPSAAALGINTLLILLFVSYIVK MDFPLYQLPVIGKYFKKSTK >gi|281304873|gb|ADEF01000048.1| GENE 70 84905 - 86134 1090 409 aa, chain - ## HITS:1 COG:RSc0452_1 KEGG:ns NR:ns ## COG: RSc0452_1 COG2715 # Protein_GI_number: 17545171 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for spore maturation in B.subtilis. # Organism: Ralstonia solanacearum # 1 231 1 236 251 204 44.0 3e-52 MVLNYIWVAFFIIAFVIALLKMIFMGDMEVFPAMMNSTFDSSKTAFEISLGLTGVLSLWL GIMKIGEKGGVIAVLSRILSPVFTKLFPDIPKGHPVTGSIFMNIAANMLGLDNAATPLGL KAMEQLQTLNPKKDTATNPMIMFLVLNTSGLTLIPVSIMVYRAQLGAAQPTDIFIPILLA TFFSTLAGIVITSLYQRINLLNKVMVGVLGGMSVLVALIIWSFGQMSKDTMNVVSTSVAN ILLMTIIVLFILAGLRKRVNVYDAFIEGAKEGFTTAVRIIPYLVAILVGVGVFRASGAMN LLVEGIEWCVASVGGDTEFVGALPTALMKPLSGSGARGMMVDAMTTYGADSFVGRLSCIF QGSTDTTFYILAVYFGSVNIRYTRHAVVCGLLADLAGVIAAIAIAYLFF >gi|281304873|gb|ADEF01000048.1| GENE 71 87014 - 87838 648 274 aa, chain + ## HITS:1 COG:AGc2981 KEGG:ns NR:ns ## COG: AGc2981 COG0657 # Protein_GI_number: 15888930 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 56 272 72 304 310 126 33.0 5e-29 MKLNKLLSIFLFLSLTINTSAQRVIEMNIWNGRVPHPTGVDTDTAKMRVYLPDAKRATGR AIVICPGGAYAKLSMENEGTAWAPFFNDLGIAAIVLKYRLPNGVAQAPISDAEQAMRLVR QHAQSWHINRNDVGIMGSSAGGHLASTIATHSRGDAKPNFQILFYPVITMMPDFTHKESH DNLLGRKPSKREEREYSNDIQVTRVTPRAFIALSDDDNVVQPANGVNYYFELYRHDVPAS LHVYPSGGHGYGFDSRYRYHVEMRLDLQAWLRSF >gi|281304873|gb|ADEF01000048.1| GENE 72 87870 - 88949 662 359 aa, chain + ## HITS:1 COG:no KEGG:BF1750 NR:ns ## KEGG: BF1750 # Name: not_defined # Def: 1-phosphatidylinositol phosphodiesterase precursor # Organism: B.fragilis # Pathway: Inositol phosphate metabolism [PATH:bfr00562] # 24 256 63 280 345 95 30.0 4e-18 MNKYFISCLWLLLSTATTAFAENWLAAINDDVFLYELSIPGTHDACTGNGFVEKDERTGK QYALTQDVCLGNQWKSGIRAFDLRPAVHIDSVGNPSLAIFHGTWQTRLSMKEALVTLCDS LRKNPSEFAIVLMRHENSADKNDERWAGLMEELLHAPAFENLFVAYHPHLTLGEMRGKIL LLSRDVYADKPIGAYVRGWTHEPDFALQSKGELYHEDSQGALYVQDFYDTSEGKQAVALK CQSIKRLLDFSTRSRQQENAHCPLVINHTSGYAESVMVQGERIATSEGYRKNASITNQYV IHYLKNLSHTGALGIIMMDYAGVDISGRHEVKGFTLTKEIIAHNFRNEKRPSSIPQRNL >gi|281304873|gb|ADEF01000048.1| GENE 73 89046 - 90221 1211 391 aa, chain - ## HITS:1 COG:no KEGG:PRU_2632 NR:ns ## KEGG: PRU_2632 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 23 391 19 384 384 447 62.0 1e-124 MKKTLRNIFCLATFALAALCSVSCTQKKFNINGNIAQAKDSTLYFENMGLNGPKVLDSVK LGEDGAFSFSEKAPEAPEFYRLRIAGQIINLSIDSTETVQVKASYPTMASQYEVSGSDNC SKIKELTLKQMGLQALVNNIAQNINLTSEVIDDSLHKVMAAYKNDVKLNYIFKEPMKAYA YFALFQTIHWGDANVLVFNPRTNEDDIKVYAAVATSWDTYYPHAERGENLHNIAIEGMKD VRIIRNNQQKVIDASKMATTGLIDIALPDNRGNIRKLSDLRGKVVLLDFHIFASKESTQR IMMLRELYNKYHERGFEIYQVSVDPNEHFWKTQTAALPWINVYAAEDEQQQILTNYNIQS IPTFFIIDKNNTLQKRDVQIKNINAEIESLL >gi|281304873|gb|ADEF01000048.1| GENE 74 90500 - 91015 287 171 aa, chain + ## HITS:1 COG:SPy2087 KEGG:ns NR:ns ## COG: SPy2087 COG3758 # Protein_GI_number: 15675844 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Streptococcus pyogenes M1 GAS # 8 121 10 123 198 67 33.0 1e-11 MFKIIQQSDYKVNKWSGGITRELFILPHDSSLAERNFSLRISSAVIHLTESTFSDFSHYQ RFLLPVEGNITLYIEGRAHQLSNDLPFAFDGSKSVRSVNSSGAIDFNVICRKDYKTKVTV VHKGESERHATTFIFALEDIDINGRKVEKYNSVLTTEPYKFTGKAVVVEIP >gi|281304873|gb|ADEF01000048.1| GENE 75 91241 - 91693 541 150 aa, chain + ## HITS:1 COG:no KEGG:CLL_A3083 NR:ns ## KEGG: CLL_A3083 # Name: not_defined # Def: septicolysin # Organism: C.botulinum_B_Eklund # Pathway: not_defined # 1 150 1 150 151 116 45.0 3e-25 MKLAEALSIRKDLQKKIDQLKTRLVQNVKIQEGDEPAEHPDELLKELDDCLIQLQKLMLQ INITNIQTQHNGRTLTDMIAERDVLTKRITILRDMFEQASQGMDRYSRSEIKYVTTINVK DLNKEIDLYAKKLRKLDMQIQAANFEVDLI >gi|281304873|gb|ADEF01000048.1| GENE 76 92091 - 93911 1976 606 aa, chain + ## HITS:1 COG:TP0831 KEGG:ns NR:ns ## COG: TP0831 COG0018 # Protein_GI_number: 15639817 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Treponema pallidum # 39 606 43 589 589 451 41.0 1e-126 MKIENQIASSVIASVKELYGQEVPMSMVQLQKTKSNFEGNLTLVVFPFLKISKQKPEDTA KAIGELLVRDCPAVASFNVVKGFLNLNIAKEAWVDLLNDIHADEKFGEKPVTEDSPLVMI EYSSPNTNKPLHLGHVRNNLLGWSLAQIMEANGNKVVKTNIVNDRGIHICKSMLAWQKWG NGETPESSGKKGDHLIGDYYVAFDKHYRAELAALKSKYMADEGLDEETAENKAKEESALM KEARAMLVKWEQGDKEVRTLWKKMNSWVYAGFDETYKALGVGFDKIYYESETYLEGKAKV EDGLNRGLFFRKDDNSVWADLTKEGLDQKLLLRSDGTSVYMTQDIGTAEMRFKDFPIDKM IYVVGNEQNYHFQVLSILLDRLGFKWGKELVHFSYGMVELPNGKMKSREGTVVDADELIT EMIADARKTSDELGKFDDMSEQEKQDIARIVGLGALKYFILKVDARKNMLFNPEESIDFN GNTGPFIQYTYARIRSIMRKADAEGIKLPQQLSTSAPMNDKEIALIQKLNDYRAVVEQAG TDYSPSGIANYCYELTKDFNQFYHDYSILNANSEEEKTARLVLAANVAKTIKNAMQLLGI EVPERM >gi|281304873|gb|ADEF01000048.1| GENE 77 93926 - 94396 290 156 aa, chain + ## HITS:1 COG:BH0863 KEGG:ns NR:ns ## COG: BH0863 COG3341 # Protein_GI_number: 15613426 # Func_class: R General function prediction only # Function: Predicted double-stranded RNA/RNA-DNA hybrid binding protein # Organism: Bacillus halodurans # 22 156 62 196 196 134 48.0 6e-32 MKDNCVNPPDYRNDTVLPLPLEVKANAWAVDAACSGNPGPMEYRGIDLATGAEVFHFGPL HGTNNIGEFLAIVHALALLEKRGDTQKTIYSDSYNAILWVKKKQCKTKLKRTPQTEPLYQ IIARAEQWLRTHAYQNPVIKWETAKWGEVPADFGRK >gi|281304873|gb|ADEF01000048.1| GENE 78 94551 - 95054 358 167 aa, chain - ## HITS:1 COG:CAC2751 KEGG:ns NR:ns ## COG: CAC2751 COG0454 # Protein_GI_number: 15896008 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Clostridium acetobutylicum # 4 167 3 167 167 125 35.0 4e-29 MIIFREATLSDFIGAWEVLRMARDTMLKAGRHQWTAEYPCAKNVMEDITSHQAYVLEAEG EIVGYVVVAKNGEPKYNDIQGRWLSEQDYFVLHRLAISPTVRGKGLAKRIFHEVENLCIS QAIHSIKIDTNNDNVEMLGMLQQLGFTYCGVINYDKNKQRLAFEKLV >gi|281304873|gb|ADEF01000048.1| GENE 79 95079 - 95954 504 291 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881141|ref|ZP_06289828.1| ## NR: gi|282881141|ref|ZP_06289828.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 291 1 291 291 584 100.0 1e-165 MWKIYYRTYTQALVWLSLALTTWALTSCKDTFEEPEPVPPTLSVAPELTTDQLSIAFDVI SYKGTFKVEDANRDVLTSPKIVIHDNHVKVELTQEFTILKITDATQLPIYLQIHCTHPDL IPVSYSIEQHYGVISYHDIKYGVGKNKIIEKTIRGDAAQVSINEKGLLMIKSLKPGTMSF FLTDSRGVVNFVAVSVDKGWDLTSNHVEVEGSPGELLCFSILFGARQWTLTEEGMVSPFN VVINDEKLDHSIFPHPWLQLQVPKTDKDKVVYQLENKDGHRATITIHIKAS >gi|281304873|gb|ADEF01000048.1| GENE 80 96085 - 96462 199 125 aa, chain + ## HITS:1 COG:SMc01274 KEGG:ns NR:ns ## COG: SMc01274 COG0239 # Protein_GI_number: 15965143 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Sinorhizobium meliloti # 7 124 4 121 125 74 40.0 5e-14 MNIFRSLLYVAVGGAMGSVARYLLSKFVSSSILSVFPFATFVINLLGSFLIGIFCGLAER NVAIQGDMKLLWITGVCGGFTTFSTFSNESLSLLQNGHVLYGVLYIAGSVFLGILMVLVG LRLVG >gi|281304873|gb|ADEF01000048.1| GENE 81 97261 - 97620 289 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881143|ref|ZP_06289830.1| ## NR: gi|282881143|ref|ZP_06289830.1| hypothetical protein HMPREF9019_1241 [Prevotella timonensis CRIS 5C-B1] # 1 119 1 119 119 203 100.0 3e-51 MKTKNLFTFVGGAIIGAVAAIVIVSRTNNILSDAEYKDYLMITNKDNLIFAYKAFFVDFK HFYNNNQELMRYVIGNMDKETSNRFLTDMELINSMEQANNSGTPSEYTIETTSQSKQQD >gi|281304873|gb|ADEF01000048.1| GENE 82 97631 - 97780 62 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFIAAVIIYIVLALVLGAAWPFDIFGGHGCLLQVIAAAWWILLIASFSS >gi|281304873|gb|ADEF01000048.1| GENE 83 97808 - 98032 142 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRLILSIIVLAYSTFCAAYYDYDVAEDAGESGGLFHLIDLFVQYILLPVFWLLIILFGL GFAIVWIKEKIEKL >gi|281304873|gb|ADEF01000048.1| GENE 84 98100 - 98690 287 196 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881145|ref|ZP_06289832.1| ## NR: gi|282881145|ref|ZP_06289832.1| hypothetical protein HMPREF9019_1243 [Prevotella timonensis CRIS 5C-B1] # 1 196 12 207 207 385 100.0 1e-106 MFLSSLFNACQQKSSDNNTNTIDTLWNDKVQDCFFGIKLGENANRYVEKFQTMNLQGELH PIINDCFSIIFSRPSLSTIGFGTVQWDKIRITSGKGAVYEIAFIKTYQHGQESACNYMYY DLLKKLSSKYKITDVASTYSNDSTVSELKEIYGKNEVKAQLYKRKYFLEGHGEMINICLD YVSYPIMENQSTKNDL >gi|281304873|gb|ADEF01000048.1| GENE 85 98711 - 99289 290 192 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881146|ref|ZP_06289833.1| ## NR: gi|282881146|ref|ZP_06289833.1| hypothetical protein HMPREF9019_1244 [Prevotella timonensis CRIS 5C-B1] # 28 192 1 165 165 313 100.0 4e-84 MEKYLRKILLLSMVILTLPIQAQHLKFMGIPLAGSIDHFSKRLAEKHILPIPSENRTLKF GIRAFYGYFAERKSKIYVWYDRNKNVYSAKAFFYFSSEDYIDFIDADKASKNFAEGLLTM LKEKYPNFVESDQYKHNVIATLLIPQPEGEYYLGEISLWKQVFYAEDAYGINIQYTDYSS AHISKDKIKEDL >gi|281304873|gb|ADEF01000048.1| GENE 86 99531 - 100181 362 216 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881147|ref|ZP_06289834.1| ## NR: gi|282881147|ref|ZP_06289834.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 216 78 293 293 433 100.0 1e-120 MIEWANRQQNVYEAKSTQIQHKLLACKLAPNILRGETKLQLQKGIADEIAYWKELEELLR HFNSIVTDIQKIQNGGGSIYGIIRADNQRELSYIRYACLLEDLAVLNTTSPQKSSLKDNL CIDSLYIEMRKCRPSVLTHAIRKNEDLSENDAASRAKYLNEAYSFPVVKRGVGNWLNARA QVANLLSPNYGIAYNNHTIRTLRSLIYLYRGMEQGV >gi|281304873|gb|ADEF01000048.1| GENE 87 100363 - 100545 82 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPGKTNDIFYNEKHQPYSGCKIGSTLHEMITIDAELSLQSASHNSRENNQRQSWLQIREL >gi|281304873|gb|ADEF01000048.1| GENE 88 100985 - 102382 1337 465 aa, chain - ## HITS:1 COG:aq_1964 KEGG:ns NR:ns ## COG: aq_1964 COG0750 # Protein_GI_number: 15606963 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Aquifex aeolicus # 8 460 3 428 429 120 25.0 5e-27 MEIFLIRLLQFVLAISLLVLLHEGGHMFFAKLFGVRVEKFFVFFDVSIGKWKGNLFSFKP KNSDTTYGMGWLPLGGYCKISGMIDESFDTEQMKQPAQDWEFRSKPAWQRLLIMIGGVTV NFLLALFIYSMVLFYWGESYVMVKDMSMGMRFNQEAKSYGFQDHDILVGTDQGAFRDFNA DVYRDLSTAKRVDIIRNGKPMSINLPGDLNLLGMLKSTPRFVTPFVLADVDSVMPSGAAA KAGIRKGDRLVGINGKPIDSWNAYQEEVGVLSDELMAAKTHADSLKIRTASIAFMNPATF KVDTAQVVLDSSLMLGVGMTNLYSYYTPTKKEYGFFESFPAGTKYGWNVLAGYVGDMKYV FTADGAKSLGGFGAIGSLFPPVWDWHMFWLMTAFLSIILAFMNILPIPALDGGHVLFLLY EMITRRKPSETFMVRAEYVGIAILLLLMIVANLNDVLRWLGIITY >gi|281304873|gb|ADEF01000048.1| GENE 89 102508 - 103671 814 387 aa, chain - ## HITS:1 COG:CAC1795 KEGG:ns NR:ns ## COG: CAC1795 COG0743 # Protein_GI_number: 15895071 # Func_class: I Lipid transport and metabolism # Function: 1-deoxy-D-xylulose 5-phosphate reductoisomerase # Organism: Clostridium acetobutylicum # 3 353 2 354 385 345 50.0 6e-95 MKKQICILGSTGSIGTQALDVIEQHADLYEVYCLTANNRYKELAEQARKFRPAAVVIANE AHYEPLCQLLNDCPDVKVYAGKAALDEIVSATPIDMVLTAMVGFAGLSPTIHAIQARKKI CLANKETLVVAGELICKLAQQHHVPILPVDSEHSAIFQSLVGENDNEIEKILLTASGGPF RTYTLERMRHVTAADALKHPTWEMGAKITIDSASMMNKGFEVIEAKWLFGVPVEKIQVLV HPQSIVHSAVQFADGGIKAQLGVPDMRLPIQYAFSFPERLPLHGQRLDMFKQPLEFFEPD MGKFKCLALAYEAMRQGGNMPCVLNAANEVVNEAFRHGKCSFLDMGNIIEKTMQRVSYDK SSQFQIYVDTDAETRRVAEEMVHELRR >gi|281304873|gb|ADEF01000048.1| GENE 90 103709 - 104218 350 169 aa, chain - ## HITS:1 COG:no KEGG:PRU_2926 NR:ns ## KEGG: PRU_2926 # Name: rimM # Def: 16S rRNA processing protein RimM # Organism: P.ruminicola # Pathway: not_defined # 1 169 13 181 181 216 62.0 3e-55 MIKKEDVYRIGQIGKPHGVKGELSFHFEDDVFDRTDADHLILEVDGILVPFFFEEYRFRN DVTAYIKFCDVDTEVQARELIGSEVFFPRSVAHQDGACRSWAQLLGFSLIDATTGHQIGV IQSIDNTTLNVLFELEDGKLIPANEELIADIDGEKHQIFITLPKGLLDL >gi|281304873|gb|ADEF01000048.1| GENE 91 104211 - 105521 1166 436 aa, chain - ## HITS:1 COG:BB0472 KEGG:ns NR:ns ## COG: BB0472 COG0766 # Protein_GI_number: 15594817 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Borrelia burgdorferi # 1 434 16 439 442 363 44.0 1e-100 MEAFVIEGGHRLSGTIQPQGAKNEALQVICATLLTSAPVRIKNIPDILDVNNLIRLLQQV GVKVTRVHKNEYIFQADAIDLAYLDSDEFVQKCSSLRGSVLMIGPLLGRLGRATIAKPGG DKIGRRRLDTHFLGFKKLGASFKHEESRNIYHIEAEHLHGTYMLLDEASVTGTANIIMTA VLAKGTTTIYNAACEPYIQQLCRLLNDMGAKISGIASNLLTIEGVSSLHGAEHTVLPDMI EVGSFIGMAAMVGNGVRIKDASVKNLGIILDSFRRLGINIKVEGDDIVIPHQPHYQIDSF IDGTIMTLSDAPWPGLTPDLLSVLLVVATQARGSVLFHQKMFESRLFFVDKLIDMRAQII LCDPHRAVVVGHDRKIRLRAGRMSSPDIRAGIALLIAALSANGTSRIENIAQIDRGYENI EMRLNALGAHIKRVDD >gi|281304873|gb|ADEF01000048.1| GENE 92 105526 - 106119 793 197 aa, chain - ## HITS:1 COG:no KEGG:PRU_2928 NR:ns ## KEGG: PRU_2928 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 189 1 189 196 204 55.0 1e-51 MDIEGLDYNTQREKLILPEYGREVQNMVDYALTITDRQERQHCAETIVSTMARMFPQNKE SEEYLRKLWDHLAIMSNFELDIDYPFDVSQAAKIYTKAEPVQYPMNRIPVRHYGNMMFEM FEKLKNMEPGEERDELTRITANQMKRDLVQWGHGSSDDEKVAFDLERFTDGKIVLDLNEF KFDRIDMRDIDKKRKKR >gi|281304873|gb|ADEF01000048.1| GENE 93 106170 - 106862 666 230 aa, chain - ## HITS:1 COG:SA1856 KEGG:ns NR:ns ## COG: SA1856 COG1214 # Protein_GI_number: 15927626 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Staphylococcus aureus N315 # 5 219 13 214 229 84 31.0 2e-16 MSCILSIETSTDVCSVAVSQDGTCIFEKEDSSGPNHAVKLGVFVDEALSFIDSHLIPLDA VAVSCGPGSYTGLRIGVSMAKGICYGRSVKLLSVPTLHLLCVPVLLREQIQEENALLCPM LDARRMEVYAQLFDRALNEVRPIQADVVDADTYKSYLDERPVYFFGNGAEKCIEVINHPN AHLIKNVEPLAKYMFPLAEKRMMNEQFEDVAYFVPFYLKDFVAKTPKKLL >gi|281304873|gb|ADEF01000048.1| GENE 94 106955 - 107830 1019 291 aa, chain + ## HITS:1 COG:CAC1716 KEGG:ns NR:ns ## COG: CAC1716 COG1561 # Protein_GI_number: 15894993 # Func_class: S Function unknown # Function: Uncharacterized stress-induced protein # Organism: Clostridium acetobutylicum # 1 289 1 290 292 130 31.0 4e-30 MIQSMTGYGKAIVTYKEKKINVEIKSLNSKSLDLSTRIAPLYREKEMEIRQQVSSALERG KIDFSIWIEKDIANEVNPINSNIVEHYYQQIKQIAKTTGIPEPLDWFQTILRLPDITLKT EIEVLKDEEWNMAKQAIEEALQNLISFRQQEGAALQNKFNEKIDNIARLLQEIEPYEKMR VEKIRTRIVDGLEQIPNAEYDKNRLEQELIYYIEKLDISEEKQRLANHLKYFRDTMNETT PNGKKLGFIAQEMGREINTTGSKSNLAEMQNIVVQMKDELEQIKEQVLNAL >gi|281304873|gb|ADEF01000048.1| GENE 95 108017 - 109063 587 348 aa, chain + ## HITS:1 COG:BMEI1469 KEGG:ns NR:ns ## COG: BMEI1469 COG0194 # Protein_GI_number: 17987752 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Brucella melitensis # 163 342 51 228 255 142 42.0 7e-34 MGKNRQERYKYETADASLYKILQQRALQHRNYPTQAEAVLWEYLKGNRLGAKFRRQHLIG QYIPDFVCLSKQLIIEVDGGYHFIGDQIISDEQRTAYLESFGYHVIRFTNEEVLADTQNV LQKIRHIMNHLNEQNKQQTVQNTTSTDKAPLLRRGGGRLQSRLIIFSAPSGSGKSTIVNW LMQEHPELKLAFSISCTSRQPRGTERDGVEYFFVSPQEFRERIDNDEFLEYEEVYEDRFY GTLKTQVDNQLKAGQNVVFDVDVKGGVNIKRFYGDRALSIFIQPPSIDELRRRLESRATD APQVIEDRLNKAAYELTFASQFDKVVVNDDLDKAKTETLQIIQEFLRN >gi|281304873|gb|ADEF01000048.1| GENE 96 109060 - 109635 412 191 aa, chain + ## HITS:1 COG:BS_yqeJ KEGG:ns NR:ns ## COG: BS_yqeJ COG1057 # Protein_GI_number: 16079618 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Bacillus subtilis # 1 180 1 177 189 113 35.0 3e-25 MKSIGIFGGSFNPIHNGHIQLAKHILRLSTLDEIWFMVSPQNPLKPQSSLLDDHLRLEMA QVALQDEPRLIAKDDEFRLSKPSYTWHTLQCLSNEHPDTSFTLIIGADNWHVFNQWAHYQ EILQKYEIIIYPRQHTAIDTASLPSNVHLVATPLYNISSTEVRQRIKQGKSVDLLIPSAI VPLATRYYPHP >gi|281304873|gb|ADEF01000048.1| GENE 97 110309 - 111625 841 438 aa, chain - ## HITS:1 COG:no KEGG:BT_3898 NR:ns ## KEGG: BT_3898 # Name: not_defined # Def: TonB # Organism: B.thetaiotaomicron # Pathway: not_defined # 2 437 5 467 609 398 44.0 1e-109 MLIYLVKVNIALILLYGFYQMFCAKDTFFGWRRGLLLGIYAIAFLAPLMPTINWLMTAET TQGMALTYRQVVLPELTVGAEKTELTWMNVAQWIYIGGVAVLLLRMLVQVGMIVAMIIRT KTREIDGCKVHVIKGKGSPFSFFKWIFVNPDAQTPVQLHEILVHEQTHARQWHSIDVICS ELFTIACWMNPFAWLLRREVRMNIEYLADHRVVANGINSKTYQYHLLGLSYQKNVATISN NFNVLPLKKRIKMMNKRRTKPVGKVKYLFFLPLVAALLAASNIESIARSISEQPTIVKKD AVKVLRQTQPQKPKKKRTPVKTQKKGGTVKDDDDKVYAISSVMPQYEGGIPALMNFLATN MKYPEEAQNKKIEGRVIVNFVVEKDGSLSDFKVVRSIDPLLDAEALRVAKLQKKWKPGYE NGKPVRVQYNLPITFKLK >gi|281304873|gb|ADEF01000048.1| GENE 98 111692 - 112060 419 122 aa, chain - ## HITS:1 COG:no KEGG:BT_3899 NR:ns ## KEGG: BT_3899 # Name: not_defined # Def: transcriptional regulator # Organism: B.thetaiotaomicron # Pathway: not_defined # 3 122 1 120 121 139 59.0 2e-32 MNMEKLTVQEEEVMQRIWQLGSCTVKQILGELGTPPPPYTTVASVVNNLKRKDFVNQEQR GNTYVYSPAIPQEKYKQHCMSRFVRDYFSNSFKDMVSFFAKEEKLSSEDLQDIIDQIEKG NE >gi|281304873|gb|ADEF01000048.1| GENE 99 112416 - 113927 1639 503 aa, chain - ## HITS:1 COG:no KEGG:BVU_1702 NR:ns ## KEGG: BVU_1702 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 19 503 30 535 535 590 61.0 1e-167 MKKSLNLWGVITILTLSLGFTACGDDDEPVDKKESTTQYVWGTDGGLKSCDHLLFTNGKE DPNGKEIGNGNQEFVFKGKQTLKKGTYLLKGWVYIAEGSELTIEPGTIIKGDKATKAALI AERGGKLIAKGTPTAPIVFTSTQAKGNRKPGDWGGVILCGKAVNNQQEMEIEGGPRTKHG GNDNADNSGVLSYVRIEFAGYPFRQDKEINGLTLGSVGSGTQLDHIQVSYSNDDSYEWFG GAVNAKYLIAYKGWDDDFDTDNGYCGTVQFGLVVRDSKLADASQSNGFESDNNGSGSAVE PYTTAQFSNITFIGPKLDKNFQNKPNYITGGSMNPNNGSALGKFQSAMQIRRNSRLSCYN TLAIGYPIGLMLDNEKGDTQGAATAGKLSLKNIWFAGMDAIGSDMNKKYEDELVTDYKAK KADSSKKSFSTTFFLSQDNTVKNSWEDLIDTKTFKPLASSPLLNAASFTGLKGFKTVSYI GAFAANDNWADGWTEFDPENANY >gi|281304873|gb|ADEF01000048.1| GENE 100 113983 - 116778 2533 931 aa, chain - ## HITS:1 COG:CC0171 KEGG:ns NR:ns ## COG: CC0171 COG1629 # Protein_GI_number: 16124426 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Caulobacter vibrioides # 108 887 51 853 888 202 26.0 2e-51 MKLKKRGIVVILLLLMMSLHLTAQEIMGTVVDAKSKEPLIGATIEIEGKKPMGVTDFNGH FKLSGLQELSYTLVIRYVAYQPKTVRGIKVGTTDLLVEMNADEQTLKEVQITAAVKQTTE TAMVQLAKESPYVMSNISSQEIRRTQDSNAGEVIRRVPGVSLIEDKFVMVRGLSQRYNNV WVNGGAVPSSEADSRAFSFDIVPSSQIDNLLIVKTQSPEYPSDYSGGFIVLNTKEIPSEN SFSLSLGGNWNTQSAFQDFTYAKGSNTDFLGFDGGLRSLDGGIHSQLKTLSDQAISLLDN GLNNDWHEKTKKPLGDLKLSANWNRQWDVNRYRLGMIVVLNYSNEYRTYRDMENNLFGIY DAQNDRENYLRQSVDNQFNNNVRLGSMFNLTLMSKNGKNKYQLKNIFNQLGNNRYTERNG ISAQSNNEQSAEYYYRSRTTYNAQLTGMHTLRAHELDWNVGYAYANRHIPDRRRYLVNDA IETNRLGLLTGNDVSREWTQLDEHIVSGSVNDKITFNWGQWEPSLKYGAYGEYRTRDYTT RELIYNWNTSNNNMPDGFRYMEMPTLLSDASYFGVDKLHLLEQMHMRNDYIGHNTLGAGY LAMSLPFGKLSIYAGVRFEHNNMELVSNTRDTEVSHVSTFYKTNDLFPSLNTTYKFNDQH QLRLSYGRSINRPEFREVSSSVYYDFDLASDVKGNPNLKNAYVDNVDLRYEYYPSRGEQI SVAAFYKHFKHPIEWTYTVTGGTDLNYSYINALAANNYGLELDIKKTLDFIGLPHFSWSL NGALIKSSVQFEKGSKEKDRPMQGQSPYLINTGIFYKNETHQMHIALLYNRIGKRIIGVG RSEGTTSGDNINARVPDSYEMPRDVIDLTASKKFGNHWELKLGVRDLLAQKVYYKQFADV TYADGAKKEVTEISRCYQPGRNLSLSVIYQF >gi|281304873|gb|ADEF01000048.1| GENE 101 117101 - 118189 1031 362 aa, chain + ## HITS:1 COG:CAC3058 KEGG:ns NR:ns ## COG: CAC3058 COG0836 # Protein_GI_number: 15896309 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Mannose-1-phosphate guanylyltransferase # Organism: Clostridium acetobutylicum # 10 341 5 337 350 244 36.0 2e-64 MKMSDNNYCVILAGGKGKRLWPCSREKKPKQFIDFFGTGRTLLQQAYDRQLKIVPTDHIF VCTNQAYLPWIREQLPDLTEEQILAEPIHRNTAPSVAWAAHRIMRYNENANLLVVPSDQV IQNEEAFVDDVLKGFDFVEQQAGLLTLGIKPTRPEPGYGYIQLGESAGNNVYKVQSFTEK PEREFAKMFVESGEFYWNTGMFMSNIKFLSACLDRLLPFVLGSLDQMNPQWTIEEENKFI QENYPLYSNLSVDYGVLEKSEDVYVMKCSFGWADIGTWHSIYESMQKSESDNVIIDSNVM LEDCQNNVIKLSKGKLGIINGLDGYIIAEHDNVLLICKKEDSSALLRKYVNEVQIKKGNE YI >gi|281304873|gb|ADEF01000048.1| GENE 102 118729 - 119898 1100 389 aa, chain - ## HITS:1 COG:PA4344 KEGG:ns NR:ns ## COG: PA4344 COG1473 # Protein_GI_number: 15599540 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Pseudomonas aeruginosa # 16 388 18 388 406 360 50.0 3e-99 MNVKPRKELVAMLPLMKQWMEAMHQEPELSTQEVNTGKYVADLLKNMGYEVHEHVGKHGI EGVVGVLSHGDGKKKIGIRADMDALPIQEINDLPYKSRHDGISHLCGHDGHSAMALGAAK YLADTKHFNGTVYFYFQPAEETMQGGPSMIDDGLFKKFNADRIYAIHNIPGLPKGVLHFH DGETMSAVDNWEIRLMGRGGHGSMPELSIDPVVAGASLVMALQTIVARNLSPWNNGVVTI GSFQAGNAGNVIPDEAVLKLSMRNMQPDGRQLVLQRIREITAAQAECFGCRYEIKEGQPG AVLVNSHEETAFAAEVARKYFGEENVVYPCKPMMSSEDFAFMLQERPGSYIMLGNGETPM VHNPKYIFDQEILPIGASLWVALCEEYLK >gi|281304873|gb|ADEF01000048.1| GENE 103 119923 - 122907 2151 994 aa, chain - ## HITS:1 COG:no KEGG:CPE1875 NR:ns ## KEGG: CPE1875 # Name: not_defined # Def: hypothetical protein # Organism: C.perfringens # Pathway: not_defined # 145 928 13 811 1479 471 36.0 1e-131 MLAFAQPSMPTISTGGNEVYYYIQMQRGQAVITSMGEDSKVQTAAPVASMKKQQTWKVIK KGDNYNIVNAAGQTLYYNTSLKFFCAGTQPNGVKDLKILKTTNTEYQGFEISTTGSGQTF LNQWRGAGVGRELGLWVQGDPNNPLQFVAINDMVINDAKPTPINEVSLTGSATWKPASKH TLWYTKPATVWMTSTLPIGNGQFGGCVMGGVKRDEVQFNDKTLWKGHVGAVVGNPNYGSY LNFGNLYITSTDSRLNAATNYRRWLDIDQAKAGVAYTANGVDYQREYICSFPDKVIAIHY KASEKGKISNNIILFNQNGKTPTYNMNGTTGVITFQGEVPRTGTPKGESYYCKAYVTAKG GTIAVGKDGGIDVKNADEMFIYLYGTTNFDASNDEYISDAALLPSHVTGVVDAALSKGYA AICDAHVEDYKALYDRCQLNITKAMPSVTTRKLIADFAISPADNLLLEEIYFCYGRYLMI SSSRGVDLPSNLQGIWNNVNNPAWNSDIHSNINVQMNYWPAEITNLSELHLPFLKYIHRE ACERPQWRANARQIAGQTVGWTLTTENNIYGSGSNWMQNYTIANAWYCMHLWQHYRFTLD KEYLKNIAYPAMRSCAEYWLQRLVKAADGTYECPNEFSPEHGPGSENATAHSQQLVWDLF NNTLQAIAELGISEDAIFLNDLNNKFKKLDTGLAIENVNGQPLLREWKYTSQASVSSYNS HRHMSHLMGLYPGNQIGRDIDANIYEAALNSLKTRGYEGTGWSMGWKVNLHARARNGNVC QRLLKTALHFQDYTGNSEGGGVYENLWDAHTPYQIDGNFGACAGMAEMLLQSHLGKLDIL PALPSMWKNGSVKGLCAVDNFEVSIEWKNNKAVSIEIVSKAGKKATVKYPKIATGFTLMD GQGNKVNATKVSDDEITFNTSKGETYRLTTTDPTGIDKTTAKRGEKGQRIVATHYYLPNG AQITSPSKNGLYIASQQYENGKKETFKFVIDCSE >gi|281304873|gb|ADEF01000048.1| GENE 104 123217 - 126744 2497 1175 aa, chain - ## HITS:1 COG:TM1624 KEGG:ns NR:ns ## COG: TM1624 COG3250 # Protein_GI_number: 15644372 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Thermotoga maritima # 393 973 23 623 785 154 26.0 9e-37 MTFWVQFAFAQTYTRGIGIYPGRVQEAYVPTLVQDNTYRNIALHRKAYHSSSYDYNLTAQ LITDGIITRAMPPRLTVTTNQGILPLREREWAIDRGEYTRNILLGSKAFIQYQWDNMYVT ANEISIVARVAYHKQQATSGYKIKLLACDERGKWQVVAQQAADSLPGVASRYKAHSDPNK VTDTELLPTRNLKMAFRLNGKVPHLYGLRLELQMAGAAHWTLTQLNFAQNGTPVTDVLPS AVFRSAWMSATSSDEWVKVDLGAQTSFDKIKLHWLNKAIRGEVLVSKDDEHWERIANLQQ RTQRQETIACKATARYVKVKMAASKNGKPFVLSEIEVMGRGGLTAKPYPESTYQDNRWSL NGGNWRLQRASEVHAVGEQIASLNFDDSGWITATVPATVLSSYVNIGAVPHPNKDNQLFM ASESFFNSNFWYRRTFILPKELVGQTVFLNFDGINWKANIYLNGKRINRIEGAFIRSKTE ITHLLREGKNVLAVEIIKTQHPGAVKEKNQLNTDFNGGILGADNPTFHATIGWDWISTVR GRNIGIWNHVYLTAEGCVTLSDAVVTTRLHLPDTLATVTPSVRLTNNQQHPIHGVLKGWI GTVKFEKPVTIPASTTIEATFLPTDYAQLQRQRFRLWWPNGYGEPYLYDAGYTFEAHDGD SQPLHYKAGIRQMSYKDADTRLTLYINGKRFIPLGGNWGFSESNLNYRAREYDAAVKYHR NMNCNMIRNWVGQTGNDEFYEACDRYGIMVWKDFWLANPSDGPDPQDERMFINNAKDDVY RIRNHPCIALYCGRNEGFPPKTLDTALRQIVNTMHPDMLYISSSADEGVSGHGPYWALPE KEYFEKQTGKLHTERGMPNVMNYESLCRTLSPHHLWPQNDAWGKHDYTLEGAQRGASFNG IIEKAFGVIGDAHQFTKLAQWVNYNGYRAMFESGSKHRLGLLIWMSHPCWPSMTWQTYDY YLEPTAAYFGVKKACEPLHIQWNASTRKMEVVNLHKILKDSLTAQCEVLDMWGKSIVKYQ QRIETKPDTTVECMAIDVPAIHGTVYYLKMSLLDAQNRVLSDNFYVCSTDEGNFQALHSL PTVKPAVTFVKDKNKVKVELYNPTDMPAMLIRLQLKGSDGEQILPVDYTDNYFHLMPHER KIVVIAWEEEDARGVDVQLQLEGMNVPTAHIPFVR >gi|281304873|gb|ADEF01000048.1| GENE 105 126943 - 128085 682 380 aa, chain - ## HITS:1 COG:PA4988 KEGG:ns NR:ns ## COG: PA4988 COG1519 # Protein_GI_number: 15600181 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic-acid transferase # Organism: Pseudomonas aeruginosa # 23 370 51 409 425 114 27.0 3e-25 MWKGEHEALGILKKNVNPNHQYIWFHAASLGEFEQGRPLIERIRSEYPEYKILLTFFSPS GYEVRKNYEYADIVCYLPIDTIRNARRFLRAVHPCMAFFIKYEFWYNYLHILKHRNVPVY SVSSIFREHQIFFRWYGKSYAGVLRCFTHFFVQNEKSKHLLHTIGIDTVDVVGDTRFDRV LQIKEKAQQLPIVEAFKADKKVFVAGSSWAPDEDIFIPFMNECKDWKMIIAPHVINEEHL KRIEEKCKGKTVRYTATTPEEAAQAQCLLIDCYGLLSSVYHYGEVAYVGGGFGVGIHNVL EAAVWKMPVLFGPNHQRFQEAQELIKAKGGFEITDSSSFARMMQQFMAQQEYLRLSGEAA GSYVESKTGATHKILKQINL >gi|281304873|gb|ADEF01000048.1| GENE 106 128193 - 129731 1223 512 aa, chain - ## HITS:1 COG:BB0372 KEGG:ns NR:ns ## COG: BB0372 COG0008 # Protein_GI_number: 15594717 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Borrelia burgdorferi # 7 504 4 486 490 325 37.0 2e-88 MAERKVRVRFAPSPTGPLHIGGVRTALYNYLFARQHGGDFVFRIEDTDTNRFVPGAEAYI LESFKWLGIQFDEGVSFGGEHGPYRQSERRDIYKKYVKQLLEEGKAYIAFDTPEELDAKR KEIDNFQYDAHTRTQMRNSLTMSKEECDQRIADGEQFVVRFKIEPGVEVHVQDMIRGEVI VKSDILDDKVLYKSADELPTYHLANIVDDHLMEITHVIRGEEWLPSAPLHVLLYQAFGWA DTMPLFAHLPLLLKPEGKGKLSKRDGDRLGFPVFPLEWHDPKSGEVSSGYRESGYFPEAV INFLALLGWNPGTDQELFSLDELVDAFDITRCSKAGAKFDYQKGIWFNHEYILSKSDDEI AELFAPIVANNGVDESLERITQVVHMMKDRVDFVKELWPLCSFFFVAPLEYDPKTVRKRW KDYSVQQMTELAALLESLDDFSLENQEEKVMKWVEDKGYKLGDVMNAFRLTLVGIGKGPG MFDISAFLGKEETLKRLHKAIEVIPTLQSTSE >gi|281304873|gb|ADEF01000048.1| GENE 107 130008 - 132059 558 683 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762592|ref|ZP_02169656.1| ribosomal protein S21 [Bacillus selenitireducens MLS10] # 199 682 246 734 750 219 29 9e-56 MSNFNFKESIQWRNLFTRSALILITVALIVWLLPRSASQQFHYDIDKPWMYNSFIASFDF PVYKTDEAIQEEKDSLLQYFQPYFNYRTQVEKQQINRFKNDFKVGIPGLPTVYLNILLDR LHRLYQQGIINTPEYNRFGKDSTSMVRVVSGKQVQSLQINCINSTLSAYEQLFNDAKLMP YRQLLQRCNLNEYIQPNMDYDKERSETELNDLLSGIAIASGMVISGQKIIDRGDIVNEYT YRVLNSFEREMQRRNVSADEMKTTFYGQLLYVTILVLLFTIYLSLFRKDYFNKPSSITML YVLVTIFPIIVSLMIRHNLFSIYILPLTTAAIFVRMFMDSRTAFVTHCTIVLICAAAVKY QYEFIIMQIVAGMVAIYSLRELTQRSQVFKTAILVGLSYIAVYFSLQLMQNSSLDKLDAD MYYHFVVNAVLLLLAYPLMFIIEKTFGFTSNVTLFELSNTNRGILRNLSEIAPGTFQHSI TVANLAAEIANKIEANSLLVRAGALYHDIGKMTNPAYFTENQVGANPHIGLSPKESARII ISHVTEGVKLAEQNNLPSFIKDFILTHHGTSTASYFYIQYKNDHPDEEVDPAPFSYPGPD PFTREQAILMMADSVEAASRSLPEYTEESITELTNRIIDGQLSRGAFVDCPITFRDVLQA KQVLIERLKAIYHTRISYPQEKK >gi|281304873|gb|ADEF01000048.1| GENE 108 132303 - 133838 1093 511 aa, chain + ## HITS:1 COG:no KEGG:BF1460 NR:ns ## KEGG: BF1460 # Name: not_defined # Def: putative outer membrane protein precursor # Organism: B.fragilis # Pathway: not_defined # 1 511 1 501 501 443 48.0 1e-123 MKKVIYVISGLLSICTAVNAGGLLTNTNQNIAFNRNFARDGAIGIDGVYANPAGVAFLSK GWHLSFNAQNVYQSRTIKSGMTIPSMEKTPFYQPFKLNGGNENGIKEYTGKAAVPILPSL QAALNYDKWGIQMAFGLFGGGGKATFNDGLGSFERQVSVIPALLASAGLTSKTPHYSMNS YISGQQYIFGVQLGSTYKMNKHLSAYAGMRINYVLNKYEGNITNITANIGGANVNLNNYF AEQATKLRMQATMLSSKATNLPAGAEKTKLEATAAKLNAGASAMDSYKEKVQDKYLDCTQ TGWGVTPIIGLNFNYKKWNVGTRMEFNTYLNIQNNTKRDDTGMFKHGVNTPNDIPALWTI GVQYAVLPNLRTMIAYHHFFDKSARMANNKQEQLSGNTQEYLAGAEWDITKDVMISAGMQ RTKYGLGDGSYLSDMSFVTSSYSFGFGGSVRIMKRARLNVAYFWTNYEQFDKSSSEPLPL LQSTNKKMVANNTDNFTRTNKVLGVGLDIDF >gi|281304873|gb|ADEF01000048.1| GENE 109 134632 - 135588 460 318 aa, chain - ## HITS:1 COG:SPy1892 KEGG:ns NR:ns ## COG: SPy1892 COG1073 # Protein_GI_number: 15675706 # Func_class: R General function prediction only # Function: Hydrolases of the alpha/beta superfamily # Organism: Streptococcus pyogenes M1 GAS # 1 315 6 305 308 227 39.0 2e-59 MKKWLKISLLIVAIVLPLALVGGSFYMLEYSLGRPTHFQMDEKTRYAHVMNTHPEIKPWL DSLLTHHLLHDTVVTMQNGEQHFGVFAYAPQLSRKTAILLHGYTDTHANMMMIAHIYAKM GYNVLLPDHHAHGQSEGKRIQMGWKERKDVLRWMAIADSLFSDSLGHSEQVVHGISMGAA LTMCVSGERTPDYVKCFVEDCGYTSVWDEFENELKVQFGLPAFPLLYTASVLNKLRDGWS FQEASPLRQVAKCHKPMLFIHGDKDSYVQTKMVYPLYKAKPAPKQLWIGKGSKHAESYQD HRKEYSELVRNFVSRYIH >gi|281304873|gb|ADEF01000048.1| GENE 110 135779 - 138412 1703 877 aa, chain + ## HITS:1 COG:MTH1001 KEGG:ns NR:ns ## COG: MTH1001 COG0474 # Protein_GI_number: 15679019 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanothermobacter thermautotrophicus # 7 860 16 822 844 456 34.0 1e-128 MSTKPTRNLEYNPAGLTDVQIAESRQRHGENVLTPPPSTSLWKLYLDKYRDPIIQILLVA AAISLVLSLIEKDFIETIGIFVAIFFATTVGFYFERDAAKKFNILNALNEESPVKVRRHG HVIEIPRREVVVGDIMIIEVGDEIPADGLLLKAVDLHINESSLTGEPICSKVVLPEGTHD EGNKTYPRNMILRSSMVMNGRGTAVVTAVGDETEIGKVARNSTETTDTKTPLNKQLDKLA KLISKVGSTVAIMAFIIFLVHDIMVNDVVWQGHDYFRMAEVVLKYFMMAVTLIVMAVPEG LPMAVTLSLALNMRRMLKSNNLVRKLHACETMGAVTVICTDKTGTLTENKMTVMEMKGLT PQTVSLHDELLSQAIALNTTAELTDDSGIGNPTEVALLMWLNKQGVSYQTIREQIEVITQ LPFSTENKYMATVAKLKGQPYLFVKGAPEIVMSFCALSAEEQAQLQSMLLDYQQKAMRTL AFAYKPLKAPVLSKDVLKEELHGLLFQTVAAISDPIREDVPLAVKQCQNAGIEVKIVTGD TEATTVEIARQIGIWKDETSQKDSISGPQWSAMPDEEAYEYAQRLKVMSRARPSDKQRLV EMLQKRGEVVAVTGDGTNDAPALHYAHVGLSLGSGTSVAKEASDITLLDDSFGSIAHAVM WGRSLYKNIQRFLFFQLVVNVTALLLVLSGSFVGVEMPLTVTQMLWVNLLMDTFAAMALA SLPPSRDVMKDKPRKNSDFIINKEMRKGILFCGVVFFAIMFAMLIYCERRGSEGVDIREL TIFFTTFVMIQLWNLFNAKTLGTNHTAFRYLWKDRGLLLVLFMVIFGQWLIVTFGGKMFR TVPLSFHEWILVIGATSMVLWTGELWRWIRRIKTKKA >gi|281304873|gb|ADEF01000048.1| GENE 111 138409 - 139047 551 212 aa, chain + ## HITS:1 COG:L111950 KEGG:ns NR:ns ## COG: L111950 COG1011 # Protein_GI_number: 15672092 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Lactococcus lactis # 5 192 3 190 207 107 31.0 2e-23 MKQQVKNIIFDLGGVLVGLDKHRCISAFEQIGAEAVAEYVRDHRTADLFYDIEVGQMTTV DFCKEVRTMAGCNASDEEIVWAWNQLLTGIPQMKKKRLLALKPSYRLFLLSNTNEMHWKK CVTDDFTDAHMTENSYFEQIFLSYKMNLTKPNRQIFERVLNAAGIEAAETLFIDDSLTNC QSAAQLGIQVFHETTGNDWLNKQEWDEDNLFG >gi|281304873|gb|ADEF01000048.1| GENE 112 139025 - 139975 423 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 20 312 22 313 317 167 35 4e-40 MKTIFLDEHTHFDEPCVATIGFFDGVHRGHQYLIRKVVEKAKQAGMPSVVVTFDQHPRAV LQKDYVPELLTTNEQKFDLLARTAVDCVVVLHFTPTMAALTAQEFMAHILHHQLKVHALF IGYDHQFGYHRREGFADYVRYGQQLGMEVIRNDAYVDDEEGKQVSSSIIRKMIREGELPL ANRCLGYPYTLTSNVIGGFQEGRKLGFPTANLDIEQITQLLPAQGVYAVQAQIDKTGAWY RGMTSIGTRPTFHGTSLSIETNLLDNYHANIYQHQLSIAFYERLREEKCFSGVDDLRQQL VQDAENVNMFFNQLNE >gi|281304873|gb|ADEF01000048.1| GENE 113 139976 - 140821 436 281 aa, chain + ## HITS:1 COG:RSc3402 KEGG:ns NR:ns ## COG: RSc3402 COG1266 # Protein_GI_number: 17548119 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Ralstonia solanacearum # 140 228 150 235 285 60 47.0 5e-09 MKTIFRTVLDIVWYLVLFVLIQLIAMKVVNLGTLLVHGMDFQEALRYAAKHAMLSTTTII LSSGLSSALTMLIFGGFKWVPLSRSYVQSRPWGTLFWVVLLSLGTLIPSTWMIEQLEIDV PSGVERMLMALLGSPWGYLVVGVLTPIAEEMVFRGAILRTLRKSFHQTTAWIPIALSALI FGLAHGNFAQFPHAFLMGLLLGWMYVRTNSIIPGVVFHWINNSSVFILYNVMPQTANLRL VEIFGGSQRAVWLSLLFSLCIFLPSLFQLQRRLHPAQEKLK >gi|281304873|gb|ADEF01000048.1| GENE 114 140958 - 141446 499 162 aa, chain - ## HITS:1 COG:no KEGG:PRU_2619 NR:ns ## KEGG: PRU_2619 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 157 6 160 164 128 48.0 5e-29 MDYKYIKQLLERYWVCETSLEEEEILRTFFSQKEVPAELEKYRALFVYAHQEATQDALGS DFDAKIISMIDEPVTVKARTIRLSERLMPLFKAAAVVAIILTLSNALQVPFMTSNGSTGT NTAGVEQVQQGVSVAIGDSSKTDTMQQSSILPSEIQPTPMIK >gi|281304873|gb|ADEF01000048.1| GENE 115 141436 - 141948 428 170 aa, chain - ## HITS:1 COG:TP0092 KEGG:ns NR:ns ## COG: TP0092 COG1595 # Protein_GI_number: 15639086 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Treponema pallidum # 16 168 8 160 162 68 30.0 4e-12 MKNISFRNDVLPLKNVLYRLALRITLSHEEAEDIVQDTLIKVWNKRDSWEEIDSIEAFSL TICRNLALDCVKRHGHLAESLEERPVETSDHSSNPFEKTLQRDRVELVRNIVNALPEKQR SCMQLRDFEGKAYKEIAEILDISEEQVKINIFRARQTVKERFKRYDNYGL >gi|281304873|gb|ADEF01000048.1| GENE 116 142117 - 144009 1555 630 aa, chain - ## HITS:1 COG:all3401 KEGG:ns NR:ns ## COG: all3401 COG1166 # Protein_GI_number: 17230893 # Func_class: E Amino acid transport and metabolism # Function: Arginine decarboxylase (spermidine biosynthesis) # Organism: Nostoc sp. PCC 7120 # 4 629 53 677 679 583 43.0 1e-166 MKKWTIEDSKELYNINGWGVSYFGINEKGNAYVTPCKDNTEIDLRDVMDELALRDVSAPV LLRFPDILDNRIEKTASCFEQASKEYNYTGQNFIIYPIKVNQMQPVVEEIISHGQKFNLG LEAGSKPELHAVIAVQCQSDSLIICNGYKDQNYIELALLAQKMGKRIFIVIEKLNELDII AKAAKKIGVRPNIGIRIKLASSGSGKWAESGGDASKFGLNSSELLLALKMLEEKGLKDCL HLIHFHIGSQITKIRRIQTALREAAQYYINLHKMGYPVDFVDCGGGLGVDYDGTRSSNSE SSVNYSIQEYVNDCIYTFVEASDKNEIPHPNLITESGRSLSAHHSVLIIDVLETASLPQM PEEFEPEENDHQLVKDLYDIWDNLNSRNIMEDWHDAEQIREESLDLFTHGIVDLRTRAEI ESIYWSICHEINMMAKSLKHVPDELRNLDKTLADKYFCNFSLFQSLPDSWAIDQLFPILP IQRLNERPTRNATLQDITCDSDGKIANFVTNRNISHVLPVHTLKNHEPYYLGVFLVGAYQ EILGDLHNLFGDTNAVHISVKDGKYKIDQIIDGETVEEVLDYVQYNPKKLVRQLETWVTK SVKQGKISLDEGKEFLNNYRSGLYGYTYLE >gi|281304873|gb|ADEF01000048.1| GENE 117 144031 - 144558 396 175 aa, chain - ## HITS:1 COG:aq_2177 KEGG:ns NR:ns ## COG: aq_2177 COG0703 # Protein_GI_number: 15607112 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Aquifex aeolicus # 3 147 2 140 168 98 36.0 7e-21 MNRIIILGYMGAGKTTIGKALSKATGMPFYDLDWYIENRMRKTIPQLFEERGEEGFRKIE HEMLHEVAEFENVIFSCGGGTPCFFDNMDYLNRQGKTVYLKACIDVLYKHLNMGRNVRPL LLNKTADEVKAYIQSQLREREIYYQKAQYTFDVTLLDQYEKIKLAVTQLRALLNL >gi|281304873|gb|ADEF01000048.1| GENE 118 144575 - 146902 1939 775 aa, chain - ## HITS:1 COG:SA1093_1 KEGG:ns NR:ns ## COG: SA1093_1 COG0550 # Protein_GI_number: 15926833 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Staphylococcus aureus N315 # 1 579 1 558 571 443 45.0 1e-124 MQENLVIVESPAKAKTIEKFLGKDYKVMSSYGHIRDLKKKELSIDPKTLEPKYEIPEEKK KLVSELKKNAKDAKHIWLASDEDREGEAISWHLCEVLGLDEEKTNRIVFHEITKPAILDA IQNPRHLNMDLVNAQQARRVLDRLVGFRLSPVLWRKVKPALSAGRVQSVAVRLIVERERE IQAFKSEPYYRINATFNIANAEGTAEVKAELDKRFPTHEEALAFLEKCKDAQFTVGSIAR KPLKRTPAPPFTTSTLQQEAARKLGFTVGQTMMIAQHLYESGLITYMRTDSVNLSSLAIN TSKDEIIKAYGKEYSKPRKYQTHSKGAQEAHEAIRPTYMSQHEIEGTSQERRLYDLIWKR TAASQMADAQIEKTTVNIEVSGVTEQFVANVENIKFDGFIKAYRESSDEDETNQEDTSHT LPVLTEGDRLLRHEITSTERYSQSPIRYTEASLVKKLEELGIGRPSTYAPTISTIQQREY VQKGDKKGDERTYTIDTLKNDHITSKEKTEVVGNEKGKLLPTDIGTVVNDFLIDNFPAIM DYNFTANVEEKFDEIAEGKASWLKMMKVFYKDFEPIVEKVMNARSEHKAGEREIGIDPES GKPVFVKIGRFGPVVQIGTAEDDEKPKFSQLPADKSMATITLKEALKLFQLPRTVGQFEG SDVVIGAGRFGPYVLHNKKYVSLPKTENPLKVSLETAIELIEQKRQQEKERHIKSFEQDE KMEVLNGRYGPYIAYDGKNYRLPKIWHDKAADISYEQCMEIIQNTPVKKSTRSRK >gi|281304873|gb|ADEF01000048.1| GENE 119 147355 - 147885 352 176 aa, chain - ## HITS:1 COG:MJ1149 KEGG:ns NR:ns ## COG: MJ1149 COG1051 # Protein_GI_number: 15669336 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Methanococcus jannaschii # 34 143 35 140 169 63 37.0 2e-10 MIHLLEKFQFCPVCGSQHFVIKNEKSKQCENCHFEYYLNPSAANVAFIMNKKGEILIERR LKEPAKGTYDLPGGFTDANETGEEGVIREVKEETNLDVTKATYLFSLPNKYRYSGLDIPT LDMFFLCEVADTSTLTAGDDAGETLWMAPEDIHTEEFGLRSIREGLRRFLDHHLPR >gi|281304873|gb|ADEF01000048.1| GENE 120 148238 - 151471 2746 1077 aa, chain + ## HITS:1 COG:no KEGG:BF0890 NR:ns ## KEGG: BF0890 # Name: not_defined # Def: putative outer membrane receptor protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 1077 22 1089 1089 1060 50.0 0 MATFRTIMLMALTLSSASLSYADTSVTPMVTAAQQQTTCKGNIMDTNGDPIIGASIVVSG QKKATISDMEGNFTLPDVATGTTLTISYVGYKTQTVVWNGKDLSITLHEDAESLEDVVVV GYGTQKKVNLTGAVSVVSKKTLESRAVTSVAQALQGAVPGLNFTVGNGGGSLDRRMSMNI RGTGTIGEGSNASPLVLIDGTEGDLYSLAPNDIESISVLKDASASAIYGSRAAFGVILVT TKSGKDGRASISYNGNMRFSTATQVPEMPNSYDFARYWNDAAANNGEGAPFNEEIMKKIH DNLNGTLKEEDKGLTKWSGYAANEPWAMYTGSWANTDWFKEMYKSNVPSQEHNVSISGGV KNINYYVSGTWLNQHGLIRHGKDVLNKYNFTTKVNADVTKWLSISYSNKWNREAFSRPSY MTGLFFHNIARRWPTNPVYDPHGHYVHGNEIIQMEDGGLDKSTTDKLFQQLVFEFKPLAG WKIRLEGNYNTTNYHNHWDVLPIYYHDPQELLTPAAWSDGYKAGKSDVSDGMSRTNYFNG RFYTEYAFTLNEKHDLKLLGGLDMESNLYTTLSASRADLITPLVPTLNNATHKDVRPGFG NTQWATMGMFARVNYAYDSRYLAEFSIRRDGSSRFIGDKTWATFPSFSLGWNMAREAFFK PLTNTVQTLKLRGSWGSLGNTNIKALYPWFLSQPVKVTDSSWLINGQKQTVASVPGLVSP NLTWETVRSWNVGLDFGMFNNRLQGNFDYFVRNTSDMVGPAPATPSILGAKQPKENNSNL RTNGWELEVRWRDHIGDFNYGVKLVMSDDVQTITRFYNPNRLLFDKDNKVQWCEGQKMGD IWGYKVKGIAQSDKEMNDWLANNKPSWGSKWAAGDVMYKDLNGDKKVNNGENTYDNTGDM TVIGNSMPRYRFGITMDAAWKGFDFLLFLQGVGKRDFWDASPYSTGANHGMWQAAAFKEH LDYWRPADDKNFGPNPGAFYPRPLFGNGGKNFEASDRYLQNAAYMRIKNIQLGYTLPVGL TSAWGLNRVRFYISAENLYTFTKMNKIFDPEATGGDWGPGKIYPLQRVLSFGLNLNF >gi|281304873|gb|ADEF01000048.1| GENE 121 151484 - 153577 1924 697 aa, chain + ## HITS:1 COG:no KEGG:BF4257 NR:ns ## KEGG: BF4257 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 695 1 673 675 538 43.0 1e-151 MKYDIKNILRGGMVLACTSLMLTACNDFLDRAPLDQVSPGDYYKNADQLGTFTWNYYKDI FPNNIGWWAGVATYDNGTDNQATSNGNAGMFLQDQWKVPTSGGIGFNAIRDVNKFINEQE AKIKAGAIEGDKKQINQYMGEAYFIRAMLYFSKLKSFGDFPIVLKELNIDADLAEASKRM PRNLVARQILSDMDKAISQLQEKPVNGGKLRINKYAALAVKSRIALYEGTFEKYHRGTGR VPGDANWPGKNMPWNKDFKINQQEEVDFFLTQAMDAAKQVSDAIGLPTANSHQMNPTKKS EYGGWNPYYDMFASSDLNKYPEVLMWRQFNSDIGVAHLTSNKLRTGSQTGWTRGLVESFL MKNGLPIYATGSGYQGDKSIDLAKTNRDERLQLFVFGESDVLATDPNSIAVYNAAAKKKK LPEVDLVKLGIANIVTDNAESKDNTGYRQRKFYNYDPDMQLGQTFSDVSGQILVRVEEAM LNYIEASYEKTGGIDATARKYWTQLRERAGITASIETTIDATDMSREANVNTPSYDWGAF STGKPINATLYSIRRERRSELAGEGYRMDDLIRWCALDQVKNYQIEGVNFWDEMYKNKVF EYKVKDDKGNEVTKNYIVADGGDKATMSSKDLTKYYRPYQMNKKYNLYNGYTFYQAHYLS PFSVQEMKLCSPDGSVANTYLYQNIYWPTTANGEAEK >gi|281304873|gb|ADEF01000048.1| GENE 122 153956 - 154417 574 153 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150004191|ref|YP_001298935.1| 50S ribosomal protein L13 [Bacteroides vulgatus ATCC 8482] # 1 153 1 153 153 225 71 1e-57 MDTLSYKTISVNKETAQKEWVVVDASDQIVGRFCSKVAKLLRGKYKPSFTPHVDCGDNVI IINAEKIKFSGKKETDKLYTRYTGYPGGQRFNTPADLRTRKNGVEKIVRHAVKGMLPKGP LGRSLLKNLYVFEGAEHDKAAQKPKAIDINQYK >gi|281304873|gb|ADEF01000048.1| GENE 123 154426 - 154812 531 128 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|150004192|ref|YP_001298936.1| 30S ribosomal protein S9 [Bacteroides vulgatus ATCC 8482] # 1 128 1 128 128 209 80 1e-52 MEIINAIGRRKSAVARVYLTEGTGKITINKKDIETYFPSAILRYVVKQPLTTLEVEGKYD IKVNLDGGGFTGQSQALRLAIARALVKINAEDKSALKAQGFLTRDSRSVERKKPGQPKAR RRFQFSKR >gi|281304873|gb|ADEF01000048.1| GENE 124 155058 - 155945 1091 295 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212690772|ref|ZP_03298900.1| hypothetical protein BACDOR_00259 [Bacteroides dorei DSM 17855] # 1 278 1 278 279 424 76 1e-117 MSRTNFDQLLQAGSHFGHLRRKWNPAMAPYIFMERNGIHIIDLNKTVAKIDEAAEALKQI AKSGKKILFVATKKQAKDIVAEKAASVNMPYVIERWAGGMLTNFPTIRKAVKKMANIDKL MNDGTFANISKRELLQVTRQRAKLEKNLGSIADLTRLPSALFVVDVMKEHIAVKEANRLG IPVFAIVDTNSDPKNIDFVIPANDDAKDSIDVILTACCQAIAEGLEERKAEKADEKAAAE QSEEVAEAKPKRARRARKEAEETVETSTEVADEKAETEEKEEVEVKAEEETPAAE >gi|281304873|gb|ADEF01000048.1| GENE 125 156073 - 157065 277 330 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 8 281 9 277 283 111 27 3e-23 MAVNIADIQKLRKMTGAGLADCKKALTEAEGNMDRAVELVRERGLAIAAKRSDRETSNGC VLVKKSNDFAAMIALKCETDFVANGKEFIECTEQILDAAIAAKAKNIEEILGLTLADGKD VATTVKLRSGITGEKMELDGYLFIEGANVEVYNHMNKNILCTMVQTNKPAEEQGHNIAMQ VAAMNPVALNEESVTQEVKDAEYKVALEKTKEEQVEKAVTNALKKAGFNVYISESEDHLE EGIRKGEITEAQADEIRKLKKEVAEEKLANLNEQMIQNIAKGRMNKFFKESCLLNQEYIQ DSKLTVADYLKQTDKELTVVNFKRFSLRAD >gi|281304873|gb|ADEF01000048.1| GENE 126 158045 - 158662 554 205 aa, chain + ## HITS:1 COG:YPO2082 KEGG:ns NR:ns ## COG: YPO2082 COG0179 # Protein_GI_number: 16122321 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Yersinia pestis # 2 191 18 205 218 147 40.0 2e-35 MKIFAVGMNYKEHNKELHEPLSKTTSPVIFIMPDSALSKDHKPFFIPDDLGVIEYETEVV VRICRLGKTISSRFAHRYYDAVTVGIDFTARELQQQLRAKGLPWELCKSFDGAATIGDWM DIDKFQDIQRLQFHLDVNGSTVQKGFTGDMFYKIDELIAYISRYFTLKTGDLLFTGTPAG VGPVHIDDHLEGYLEDYKVLDFNCK >gi|281304873|gb|ADEF01000048.1| GENE 127 158716 - 162222 2224 1168 aa, chain + ## HITS:1 COG:no KEGG:PRU_2691 NR:ns ## KEGG: PRU_2691 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 133 1158 18 1041 1046 1066 51.0 0 MLLTSPFLMAQAHFFNLTANDVKIDSVLPYFSHSFELNECYADSIYTVSILYPEFIDMTT ADVARYQQLSGAPLPALPIPQHKIAVNRKRGLLQVGFSPLVYRNHRYQILVSFMLRIEAK PLMPSMKRATAKTRASSNSRYADHSVLASGKWAKIRVPSTGVYQLTDELIRQAGFTDLQK VKVYGYGGRLQNEQLVSEELIATDDLKEVPTCWVDGRRLFYAYGTVSWDSNTATRRTRNP YSDTGYYFLTQSEDTPVVLDSTAFVHSFYPSPDYYHTLYEVDGYSWYHGGRNLFHPKAID VAESATYTIPSLASKGKAKMAVNVSAGSASRISVMHNGKQLGELAIALSKNDKGNETSGV YQIERTSMTDTVKLTTRSGSPSRLDYISFIWQEPLPAPHLKGVNFPVPEFVQAVTNQDLH AHGFADMVIIIPSSQKLKTQAERLKAFHEKHDGLRVQIVSANQLYNEFSSGTPDANAYRR YLKMLYDRATTAADMPKYLLLFGDCVWDNRMLTAQCQSLHPDDYLLCFESENSFNEVDCF VDDGFFCALDDGEGLNKDFSDQQDIAVGRFPVTTEADAKVMVDKVIAYVTNKDAGAWQNT LVFMGDDGDNNLHMQDIDKTANAISSQYPSYLVKKIMWDAYQRETSSSGNTYPEVSRIIK QQQAAGALIMDYGGHGMATQISHEKVLNLHDFQTFQHPHLPLWITASCDIMPFDGETPTI GEVAVRNPRGGAISFFGTTRTVIAHYNARINTSFLRYVLSKDAHGNPVTIGEAQRLAKNE MITSRKDLTCNKLQYALLGDPAVALHQPSYNIVVDSINGKALASTPTVALQAGSTVTVKG HIEGVSDFQGLVFATVRDNEEKIVCRRNDQKETKEALTFMDRPRTLYNGANKVENGKFSF VFAVPSDINYSEGSGKLNLYAISDNHQMRASGVSEAFTLGGGAELTTDSLGPSIYCYLNS PSFVNGGNVNSTPYFVAEIKDDDGINVSGSGIGHDLQLIIDGDMSKSYNLNANFTYDFGS YTAGSTFYQLPELAPGPHQLLFRAWDVLNNPSTTKLSFNVVRGMEPQLFSIDCTNNPARE ATTFILEHDRAGAVVDVEIEVFDLSGRLLWHHQESSVSTTNTQTVNWNLTVENGNRLQTG VYLYRARISSEGSAKVSKAKKLIVVSNN >gi|281304873|gb|ADEF01000048.1| GENE 128 162270 - 163445 1161 391 aa, chain + ## HITS:1 COG:no KEGG:PRU_2690 NR:ns ## KEGG: PRU_2690 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 10 390 3 378 379 575 74.0 1e-162 MNRFSKISVLFVFILSALSLSAQDKRNMFNPENYSVTSQMIAPDARAAGLGDVGAATDPD VVSQFWNPAKYPFTISRAGVALNYTPWLRQLVNDIDLAYLAGYYRIGDYSAISGSFRYFS LGEVNTYVGQTKDGGMTINPYEMSADIAYSLMLSEHFSLGAAVRWIYSDLTYDFKEETTP GSAFAADIAAYYQNYINLGARESQLGIGLNISNIGSKITFGGSDNSEFIPTNLRLGASLM VPVDEYNRFTIAADANKLLVPTYPKQDEGESTEAYQERVQKDYYDVSSIGGIFKSFGDAP NGAKEELQEIQWSVGAEYVYHDQFSLRAGYHHQSENKGNLKYFTVGAGFKMSVFSLDAGY VIAMAKSNPLDQTLRFSLSFDMDGIKDLLKR >gi|281304873|gb|ADEF01000048.1| GENE 129 163614 - 164105 360 163 aa, chain + ## HITS:1 COG:BH0108 KEGG:ns NR:ns ## COG: BH0108 COG0245 # Protein_GI_number: 15612671 # Func_class: I Lipid transport and metabolism # Function: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase # Organism: Bacillus halodurans # 7 161 3 157 157 174 52.0 8e-44 MSFPSFRIGFGYDVHQLVEGRALWLGGIKISHDKGLLGHSDADVLIHAICDALLGAANLR DIGYHFPDTAHETLNMDSKVILQKTMQLLASKGYQLGNIDATICAEQPKINPHIPAMKTC LAQLMNTDEDNISIKATTSERMGFVGRQEGMAAYATVLIVKQN >gi|281304873|gb|ADEF01000048.1| GENE 130 164409 - 166313 1107 634 aa, chain - ## HITS:1 COG:no KEGG:BT_3013 NR:ns ## KEGG: BT_3013 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 634 1 644 644 475 41.0 1e-132 MKKKLLYSVCSLVMACAVASCDYLDIVPDGTPTEKDAFANPGTTEGYLYSCYGFIPNNGN TQSAIDFLSGDEVVTAFESDPFAAFSQGTYTAISPHMSYWDELMGGMRYCYTLINHVDGV SGMSKKMASDYKAQAKFLIGYFYYLLIQSYGSVIIVKDVEDVNVPVEKFKARAPMSECVK FAANMLDEAAKDLPASRDGDEYGLATSVAAKTLKAKLLVTAASPLFNGYAPHKNIKNVDG TFLFEQKFDQSKWDRAYEACQEAVRIAEKSGFALYKAVPGTNVNAPEPADMTQRSLRFAI IDKGNLSETIWGNTKGQSNNDIQAKSAPYAQGDKGRFALNAIAPTLAMMERFYTDKGLPL EEDPSFPNRNDWWNLVDAPADCAYAEGKVSAFVCHRDPRMYAWTTFENGYYEIAGDKPEG SNYDKKYRRGKVQGKIVMKMMIGEPSGRGANLNTLRNNNYSPSGFLNKRLVDPLKPASSP KINYIHPYLTVADLYLLAAESAVEVNKLGEAKVYLDKIRSRAGLPSVDDAWAHAVHPEKA NDKEGMREIVRQERLIEMYMLNQNFWDLRRWLMAERCMNKAPYGVNILADNIDTWWKPTQ VQVSRVFTAPTNYLMPIPYEEIKKNPKIVQNPGY >gi|281304873|gb|ADEF01000048.1| GENE 131 166334 - 169417 1940 1027 aa, chain - ## HITS:1 COG:no KEGG:BF2942 NR:ns ## KEGG: BF2942 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 32 1027 125 1124 1125 1006 50.0 0 MNTKRLILFVSFVFTMLSAIGQGKTVTGEVFSETGETIVGATVRLKSDARVATITDVNGK FSINAKDGDKLLVSYLGYKTSEVSAHDGMKVKLQLSSTELNEYVVTAFGTGQKKVSIVGS VQTIRPRELKIPTPNLSAAFAGRIAGMIAVQRSGAPRSDGADFWIRGMSTTSPATSPLII LDGVQITADDLNALDPEVIAEFSVLKDATATALYGSRGANGVIIVTTKTGDNQVKPSVSI RVEGYVNTPTRLPKFVDGPRFMELFNEAITNLPTGATPYSKEKIEGTRQGLNPYAFPNVR WYDELFRNHTFNQKVNMNISGGGKRLNYFMSATVDHQTGMLKNVSQRYYGYNNQLDYWRY AFQNNIQMNLTRSTTIALRLNTQICNSRGPNSNVGGIFNAVINSNPVDFPINYPATDYQN YVRWGSKNLGWMGAQNPMADAVNGYTNNFSSTVIANLQLDQDLSMLVHGLKLSALASFKN WSYTDTERMRDHNFFELKSYAKKSDGTYDLSLQPIGREQDTSLRSNGWSQGNRSVYFHVM LLWNQKFGEHELGAMVNYNQDELARNVADRNLLGNLPYRKQGLAGRITYGYANKYLFEAN FGYNGSENFAKGNRFGFFPSMAVGYNVSEERFWIPLKGYIPFFKLRTSYGLVGNDQIGGT RFAYMSNIYMTGGPSYTTGINQDYSKSGPKYEQFENKGITWEVGQKLNLGIDMRLFDGLS LSADFFREYRKNVFQRRGVVPSYMGTLRTKLYGNLAEVSNRGVDVSLDYNKQVTGDLYIG LRGTFTYTKNKIEKWDEPAYQEYPRQAYVGASLQTIYGYEAERLFIDEADVKNSPSQKAL SPNVSVGDIKYKDQPNVDGKCDGKIDGNDIVPLGYPRVPQIVYGFGGNVKFKKIDFGMFF QGVAQTSMLLNYFHPFGSFSNRNVLKFIDDDHWSPENKNPYAAYPRLTKDDMPNNTQASS YWLRDASFLKLKNVELGYSFKHVRVYLSAINVCTFSKFKLWDPEMGGGNGLAYPTQRTFN LGLQMNL >gi|281304873|gb|ADEF01000048.1| GENE 132 169670 - 169894 102 74 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTYKPLKLFYFFQTSDFFVFIYLFFLNFNILSLNFKSFTSMLAYVTDFLSITAVWIRSNT ATTKSHTTAHIEYA >gi|281304873|gb|ADEF01000048.1| GENE 133 170099 - 170491 438 130 aa, chain - ## HITS:1 COG:no KEGG:Coch_0565 NR:ns ## KEGG: Coch_0565 # Name: not_defined # Def: hypothetical protein # Organism: C.ochracea # Pathway: not_defined # 1 130 1 128 128 99 45.0 3e-20 MKSKLKLFTLFLFSLFLTTGFVACSDDTDPTDQTIFVDSYKGKITYLNIGSGKKVSADDG KVIVSKLGDTYSFRFDNGIPDLTGIKFEKKDDNTFVSLGSDGLKGIKITASELHILMVKG GETWTADCKR >gi|281304873|gb|ADEF01000048.1| GENE 134 170831 - 173101 1754 756 aa, chain - ## HITS:1 COG:L0292 KEGG:ns NR:ns ## COG: L0292 COG1198 # Protein_GI_number: 15673879 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Lactococcus lactis # 1 717 1 741 779 467 37.0 1e-131 MKYVDVIVPLPLEGTFTYAVPENLRDRVRFGVRVAVTFGTSKVHTAIVVHVHDNAPAFKV KTIIDVIDDQPMLLTQQYQLWKWLSGYYMAPLGDVYNAALPAGLKVEENYKPRMETYIDL CPPYRSEQALSVAFDLLKRAQNQQEVLTHFLRISHWETLQGTVTREPVVDITREELMNVA RCSYAVMKRLVERKILFTYEREVGRLGDAGEEHVENIKRLNQAQQDAYNKIVFQFLKKNV VLLHGVTSSGKTEIYIHLIKKALDEKKQVLYLLPEIALTVQITSRLRHVFGNKLGIYHSK YSDAERVEIWKKQLSSHPYEVILGARSAVFLPFQQLGLVIIDEEHETSFKQQDPSPRYHA RSVAIMLAQMYGAKTLLGTATPSAESYYNATQGKYGLVSLTTRYQGIELPEIQVIDTKDL QRRKMMTGPFSPTLIAAINEALQNNQQVILFQNRRGFAPMIECRTCGWVPKCTNCDVSLT MHKRMNLLTCHYCGYTYQVPTVCPACGATDLRGRGYGTEKVEEYVRQLFPEARVARMDLD TTRTRNAYERLIDDFSCGRTNLLIGTQMVSKGLDFDRVSVVGILNADTMLNYPDFRAYEH AFMMMAQVSGRAGRKGTRGKVLLQTKNKDLPVIRQVVENDYEGFFKALLDERKMFSYPPF YRLVYVYLRHRYEQVVETAAVELGSRLRQGLGERILGPDKPSIARVKNLYIRKIVIKLES GIDYQAVRQYLRSVQQQLLQDKRYAALQMYYDVDPM >gi|281304873|gb|ADEF01000048.1| GENE 135 173446 - 173529 79 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMIYCIVAEIVVCSLLVVGIVKWNARH >gi|281304873|gb|ADEF01000048.1| GENE 136 173536 - 174447 742 303 aa, chain - ## HITS:1 COG:ECs0391 KEGG:ns NR:ns ## COG: ECs0391 COG0583 # Protein_GI_number: 15829645 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Escherichia coli O157:H7 # 1 285 1 285 299 139 30.0 1e-32 MEIRQLKYFLKVAETLNFSEASRRLFITQSTLSQQISHLEKEIGLPLFERNSHEVYLTEP GKELLPYAIKAVVATDSCIAHIEDLKQMIAGELNIGVTYSFSTIMMDTMVDFMKTYPGVK LNIFYHSMDELLEMLKSRKVDFVLAFLPLQSDKEIDSRIIFTNRLAAIVNQNHPLAKQQC IHLKELERFGLVLPARGLLARHAFERLISHQDLELKVKVEVNTIDLIFQLLHRSNYISIL AESTVVHEEGLKALPLDTPDNQMEGCIHFLKDAYMKHSAQEFIKMLCQSTSILTNFTLKD VLQ >gi|281304873|gb|ADEF01000048.1| GENE 137 174516 - 175922 745 468 aa, chain - ## HITS:1 COG:yjjP KEGG:ns NR:ns ## COG: yjjP COG2966 # Protein_GI_number: 16132185 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Escherichia coli K12 # 20 276 33 273 277 95 27.0 2e-19 MTKNKQITTDAQLVHRKLDLLLQVGCYLMDCSADTTLIVRDMKRVEAYLGLESQFLHVYI NYNVILVNYSDESTSYTRFRKCDRHAIDMAGITRVSHLTWDAIRYNYSLDEYQEKIDAIK KRPRYYTPWQVATAAGFACGGFCIQFGCDWPAFFYASLAAILGFRLRMFLGAKGANTYIC ICMGAFVSTIVAWLSSFLSLNESIVSLIPPFMLTNTPWHPLLACALFIVPGVPLINFVSD MLGGHIQTGLVRALNVFLMIVAMVFGIGFAIKVCGIDNFAHDLSMTPHHTYLEFAIAAAI SAMGFSTIFNIPKKLLPIIAIGGIIAVCSRNFVNLGPSTGNIGLDQGLIVGSLAGSTLIS LVCTVAMHWFHTPHQCLSIPSVIPMVPGVLMYRALFAFVEMQGVVGEVTVGMHNFMLASL VILVIAIGVAIPNIFVHSMLYSRRKIKLYRLLVQRKHMDIENIDAKIQ >gi|281304873|gb|ADEF01000048.1| GENE 138 175936 - 177624 1323 562 aa, chain - ## HITS:1 COG:ECs4625 KEGG:ns NR:ns ## COG: ECs4625 COG2985 # Protein_GI_number: 15833879 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 19 561 12 557 561 348 39.0 1e-95 MEVIENLFRGFPELWGGGVAHSMMILSLVITIGLSLGKLKVRGVSLGLAWILFAGLLFGH FQFNLDEHLLHFLKEFGLILFVYSIGLEVGPGFFSSFRRGSNTLIGLVTIVIAMSLVIAI SIYYISDTPITTIAGILSGAVTNTPGLGTAQQAYSDLRHIDAPTIASGYAVTYPMGVLGV IISFIILKWVLRINVKKEEAAALVGVGHLEEVTVNTFAVKVSNEMMQGVTVKHLRELLKR NFMVSRIYREGTQIHQNIVSAQTTIQLGDSLLIVSRPKDEEPICALLGAKEEIDWKKFGK QMVSRRILITKSSVNGKTLEQMKIPNTFGVNVTRVNRSGVDLVATGQLKLQMGDKLTVVG NELSISHVEQVLGNSMKRLNSPNLIPIFLGIVLGCILANVPLFIPGISASLRLGLTGGPL IVAILIGYFGPKYNLVTYNTISANLMLRRFGLCIFLACVGLGTGEDFVQTIVSQSGMQWI LYGLLITMLPILFGGIIGRYVFHINYFTLVGVLAGAHTNPPALAYVNDMTQSDSPSVGYS TVYPFAMFLRILTIQMMIFVFG >gi|281304873|gb|ADEF01000048.1| GENE 139 178528 - 179094 718 188 aa, chain + ## HITS:1 COG:STM0608 KEGG:ns NR:ns ## COG: STM0608 COG0450 # Protein_GI_number: 16763985 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Salmonella typhimurium LT2 # 3 188 2 187 187 241 58.0 5e-64 METIINAQVPEFKVQAFQKGEFKTVSNEDIKGKWAIFFFYPADFTFVCPTELVDLAGKYE ELKKMGVEVFSVSCDTHFVHKAWYDTSDSIKKINYTMLADPLAVLAKGFGVYKEDEGVAY RGTFLVDPEGKIKIAEIQDNSIGRNADELVRKVSAAQFVESHPGEVCPAKWKQGEETLKP SIDLVGKL >gi|281304873|gb|ADEF01000048.1| GENE 140 179252 - 180811 393 519 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 215 508 2 297 306 155 32 1e-36 MLDTTILQQVKDVFKDLTHQYTFKVTAHPQHEKATELKEFINDFVSTSQLFKAQFVETED MTIQFSLLKDNEETGVMFRGIPNGHEFTSLLLAVLNADGKGKNLPDDAICKRIQRLKGNI KLQTYVSLTCTNCPDIVQALNVMALISPKITHEMIDGALFQDEVERLNIQAVPTVYANGE LLHIGRGSLGELLTKLEDMIGSEEDENEEPVKRHYDVVVVGGGPAGASAAIYSARKGLHV AIIANNIGGQMKDTVGIENFISVPKTTGAKMADNLLTHLKEYPIDVFDNRRVDKAFFDEE LKKVHIKGGEIFISPAVIIATGASWRKLNVQDEAKYMGHGVHFCPHCDGPFYKDKHVAVV GGGNSGVEAAIDLAGICKQVTLLEFGETLRADTVLQEKAKSLDNVEIFTMAQTTAIVGDG QKVTAIRVKDRNNDEERDIAVDGIFVQIGLAANADPFREALPLNQRHEIEVDNYCRTSVS GVYAAGDVTNVPYKQIMIAMGEGAKAALSAFDDRIRGVI >gi|281304873|gb|ADEF01000048.1| GENE 141 180977 - 181450 584 157 aa, chain + ## HITS:1 COG:VC0139 KEGG:ns NR:ns ## COG: VC0139 COG0783 # Protein_GI_number: 15640170 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Vibrio cholerae # 29 156 28 155 156 119 46.0 2e-27 MKNLMITGLNENKVNGVVKGLNQLLADLHVYYMNLRGLHWNVQGKGFFQLHAEYEKQYND TAEKIDSVAERLLQLDSKPENRFSELLKAASLQEENYKVTDTDGMQLILDTLKVLIAQEH AVIAAAEEANDEVTIALMDDFLVGQEKAVWMVNAYLA >gi|281304873|gb|ADEF01000048.1| GENE 142 181827 - 182516 584 229 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881202|ref|ZP_06289889.1| ## NR: gi|282881202|ref|ZP_06289889.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 229 1 229 229 448 100.0 1e-124 MEKITQDNLTDKYVDSIELRQIDKFVCDEMSRQIHRYIKAMSGSKTMMEKFEANLSTLTI PQKEEAIARYIDLNRKVLSGLDWQIVVARAMANYCDTFSYLLTLMHDERKMAFYLERVKS KYIRYHEVIEEQGKFGLKNYQGEIMVHPIYDFVRTCYVYVDDLMTMPVIVQKEGKMGLIL PDGKDTVVAPFEYDDISLRDEYPYFEAIRGNEKGYIYCDGKFVAISLNK >gi|281304873|gb|ADEF01000048.1| GENE 143 182571 - 182750 147 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSYYFGFFVQIIINFAIYKSEHLTSPILKNGICSLNNNSYYQSYEENINQLCFMCMCLD >gi|281304873|gb|ADEF01000048.1| GENE 144 182701 - 184185 1139 494 aa, chain + ## HITS:1 COG:CC2461 KEGG:ns NR:ns ## COG: CC2461 COG1524 # Protein_GI_number: 16126700 # Func_class: R General function prediction only # Function: Uncharacterized proteins of the AP superfamily # Organism: Caulobacter vibrioides # 201 479 275 561 577 104 31.0 3e-22 MKKILISCVLCVCALISQAQVERPKLVIGLAVDQMRWDYLYYYYNEFGEGGFKRLLNEGF SCEKTLINYTPTVTAIGHTSIYTGSVPALHGIAGNNFRLNGQPVYCCFDKNVKSVGSNNS AGQMSPHNLLATTIGDQLRIATNYQSKVIGVALKDRAAILPAGHAANAAYWWDKKAGHFV TSSFYMDKLPQWVTKFNKDNQAEPGFDMLANTKGITMTFKMAEAALQNEQLGKGNATDML CVSVSPTDIISHIYGTRRPEVKAAYLQLDKELAQFLKTLDAQVGRGNYLLFLSADHGGAH NPNEMKAQRIPAGGYDAKATMNKLNAHLQQKFGVDSLFNWFYAYSLHINQGAIAKANLQI DKVKQEAVNFLSKDSQFAFVVDMQNLNATTLPSKLKEQLANGYNLHRSGDIQVVCNPNVV DAKVDEKYIGTTHSAWNPYDAHIPLIFMGWKVEHGQTAKTTHIVDIAPTVCSMLHIQEPN ACIGETIEEVADND >gi|281304873|gb|ADEF01000048.1| GENE 145 184334 - 186046 668 570 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|39938628|ref|NP_950394.1| ribosomal protein L13 [Onion yellows phytoplasma OY-M] # 29 570 7 546 546 261 29 2e-68 MINFTSYNFHELKSVDQMKQMLHIRCKNNKKIKDVAIGSTLSEVFDEFKLEMPFGPICAK VNNKVCGMNLCLYHNKDVEFLDMYNSSAQRNYTRTLFFILCKAVHDLYAGSEVVIDIPVS NGYYINLKIGHEVSEEDAVRIRERMQQIIDAKIPIVRYQVPTEEAIKMFEHKGDEAKVKL LRSIGSLYTVYHQIDDYVDYYYGSLLPNTGDIYLFGLEKYYEGLLLRIPSKENPAKLGEL IRQDKMFEVFLEQHRRQHILGVSTVGDFNEAVQQGHATDMINISEALQEKKISQIADSIA MHPDVRMVLIAGPSSSGKTTFCKRLSIQLLANGIRPVQISLDDYFVDRHRTPLDSNGDFD YESLYALDLQLINEQFSALFRGDEVELPKYNFLTGKSEKSGKKMRLEERQVLVVEGIHAL NPELTAQIPDKQKFKVYISALTTILLDDHNYIPTTDNRLLRRIIRDNKYRGVSAQETIKR WPSVRAGETKWIFPYQENADIMFNTAMLYELAVIKSQAVPLLEQVPENCEEYAEAYRLRK FLAYIKPISHRDLPPTSLIREFLGGSSFRY >gi|281304873|gb|ADEF01000048.1| GENE 146 186088 - 187806 1247 572 aa, chain + ## HITS:1 COG:FN0276 KEGG:ns NR:ns ## COG: FN0276 COG1283 # Protein_GI_number: 19703621 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/phosphate symporter # Organism: Fusobacterium nucleatum # 20 567 1 525 525 249 33.0 1e-65 MMTTSEYLAIFFKIIGSLSLLIYGMKVMSEALQKMAGAQLRHILGAMTTNRFTGMLTGTF ITCAVQSSSATTVMTVSFVNAGLLTLAQAISVIMGANIGTTLTAWIMSLGYSVDLTSFVF PAFLVGIILIYSRKMRYIGDFLFGLSFMFFSLVLLSVAGKELQLENNPAIIDFFKSFDVD SYLTILSFLLIGTVITCLVQSSAAVMAITILLCSTGVLPIYLGIALVMGENIGTTATANL AALGANTQARRTALAHLVFNVIGVIWVLCIFYPFVNGVCDLVHYDPANHVLTQEQLAVKL PIVLAAFHTSFNVLNTSVLIWFIPQIEKLVCAMIKPSKKDDEEDFRLRFIQMGIMKTPEL SVLEAHKEIQSFAERIQRMFNMVRELLGIEDENKFAKLFDRIEKYEGISDNMEIEIANYL DQIGTAHLSDDTKLKIRSMLRQITEIESIGDSCYNIARSLKRKRAGKEEFTEKQYEQMHQ MFELTDDALTQMNVMLSGRKSNLDVNRSFNIETEINNYRNQLKTKNITDINNHLYTYAIG TIYMDIIQECEKLGDYVVNVVEARMGIRQHNV >gi|281304873|gb|ADEF01000048.1| GENE 147 187872 - 188219 415 115 aa, chain - ## HITS:1 COG:no KEGG:BVU_0576 NR:ns ## KEGG: BVU_0576 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 2 107 1 100 139 76 45.0 3e-13 MMSELIDMLHTEDCSMVLLHEGNIRTFKGRGVRTLYHLLNDAPESLLKSKTAVKAVGKTA ARAMTEGGVVEVYADVMSQEAYAWLEDAGVKVNCEKKVDHQRFLKIWAEMGEIKD >gi|281304873|gb|ADEF01000048.1| GENE 148 188498 - 189193 692 231 aa, chain - ## HITS:1 COG:jhp1180 KEGG:ns NR:ns ## COG: jhp1180 COG0846 # Protein_GI_number: 15612245 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Helicobacter pylori J99 # 1 227 1 221 234 204 46.0 1e-52 MKKIVFLTGAGMSVESGFKTFRGSDGLWENYPVEQVASHEGWEANPTLVTNFYNMLRKKL YDAQPNKGHRLIQQLEEKYDVTVITQNVDNLHERAGSSRVVHLHGELTKVCSSREPYNEA YIRELTKENAEVTPGAKADDGSLLRPFIVFFGESVPMISVAAQYVQQADIFVIIGTSLNV YPAAGLVGYTKSGCPIYLIDPDHVGTNGIARLEHIQKGASEGMKDLLQILD >gi|281304873|gb|ADEF01000048.1| GENE 149 189425 - 190030 827 201 aa, chain + ## HITS:1 COG:VC2568 KEGG:ns NR:ns ## COG: VC2568 COG0545 # Protein_GI_number: 15642563 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Vibrio cholerae # 3 201 15 209 209 179 48.0 3e-45 MDKVSYALGLGIGQQLSDMGAKGLNIDDFSQAIKDVIAGTKPQISNEEAQSLVQTFFQEQ ETKQRAAAAEKGKVAMAEGQNFLNENAKKEGVITLPSGLQYQVLSEGTGKKPKATDQVKC HYEGMLVDGTLFDSSIQRGEPATFGLNQVIAGWTEGLQLMKEGAKYRFFIPYHLGYGEHG AGSSIPPFAALIFDVELIEVI >gi|281304873|gb|ADEF01000048.1| GENE 150 190045 - 190917 1083 290 aa, chain + ## HITS:1 COG:ECs5185 KEGG:ns NR:ns ## COG: ECs5185 COG0545 # Protein_GI_number: 15834439 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Escherichia coli O157:H7 # 80 288 63 258 259 144 38.0 2e-34 MKKLTFVAALAIAAATFTGCGNSTPKADLKTDIDTLSYAMGMSQTQGLKDFLVARMNIDT TYMDQFIKGLNEGANAGDDKARAAYYAGIQIGQQISNQMITGINQEVFGSDSTKSISLKN FMAGFITGTTGKKGLMTIEQAGETAQKKMVAIRSKMMEKEYGPNKTAGEKFLAANKNKKD VKTLPSGVQYKVIKAGSGAMPSDTSMVKVHYEGRTLDGKVFDSSYKSGNPVTLRANQVIK GWTDALVHMPVGSVWEVYIPQDLAYGEREQGQIKPFSVLIFKIELLSIEK >gi|281304873|gb|ADEF01000048.1| GENE 151 191039 - 191950 819 303 aa, chain + ## HITS:1 COG:STM4397 KEGG:ns NR:ns ## COG: STM4397 COG0545 # Protein_GI_number: 16767643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerases 1 # Organism: Salmonella typhimurium LT2 # 146 293 72 219 220 140 48.0 2e-33 MKKIILFSLCFLAISINSWGTTEKKKHQKKQTKSTAQAILTPQDSLSFATGMAATNGLLP FLQHEYGVDEAHMNEFLTAFQEALEQVDTPEFKARHAGQAIARMVKSRILPQTTEAFKGT PEEINTKIFEQGFMAGIQNDTTIYTVNQASELFRERATAAKEAKEKAYKDANTAWLKTNS TQPGVKTTQSGLQYKIITAGTGEVPQKEDKVTVKYEGKTIDGKIFDSSYQRNPQTTSFRC DQVIKGWTEALSMMPVGSKWELYIPQELAYGARQAGQIQPYSTLIFTVELISVEKTTKPE SKK >gi|281304873|gb|ADEF01000048.1| GENE 152 192212 - 192691 552 159 aa, chain + ## HITS:1 COG:YPO0002 KEGG:ns NR:ns ## COG: YPO0002 COG1522 # Protein_GI_number: 16120355 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Yersinia pestis # 7 152 6 151 153 120 41.0 2e-27 MGKDSEKIDNLDKKILSILSNNARMPFKDVAAECGVSRAAVHQRVQHLIENGVITGSSFN VNPKSLGYSTCTYIGLNLERGSMYKKVVEQLQGIPEVVECHFTTGSYTMLLKLYARDNEQ LMDLLNNHIQTIAGVVSTETLISLDQSIKREVPANVEEL >gi|281304873|gb|ADEF01000048.1| GENE 153 192688 - 194445 1324 585 aa, chain + ## HITS:1 COG:CAC1764 KEGG:ns NR:ns ## COG: CAC1764 COG2071 # Protein_GI_number: 15895041 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferases # Organism: Clostridium acetobutylicum # 24 249 3 240 241 163 38.0 8e-40 MIDFDLRADLDHIHSSFPPAKHLPIIGITTNYADGDASIRERYYQQVSEAGGTPVLIPPI ENIDVMINTLENIDALILSGGADYNPLWLGKEPKKGLGHINATRDLPELRLAVLAYHRQI PMLGICRGMQTLAIALGGEVTQDIHTQIKHDQDADKNEPTHSISIAKNSTLYHIYPSEKL FVNSFHHQAVSNTGDRFIATATAPDGIIEAMESTEYKSILGVQWHPEWLEKAGLALFEWL VKRATEFAAAKALHQRILTLDSHCDTPMFFPQGIHFEQRDSRILVDLHKMSEGHQDAVTM VAYLPQTMPGETFADIAPFKVEGPKAYADLIFDKIEEIVKANNKYLALARHPEQLYENKR QGKKSIVLGIENGLAIENDIRNVQHFAQRGITYITLCHNGDNAICDSARKSINTHHGVSD FGEKVIQEMNNCGIMVDLSHGGEQSFYDAIDISKSPIVCSHSNCKALCDVPRNLTDDQLR AIAKVGGVVQTTFYHGFLRSDSVKASILDGVRHLEHAIEIMGIDHVGIGTDFDGDGGVCG MADSSYMINFTIQLLRRRYSDEDIAKIWGGNWLRVMRQAQEMKIK >gi|281304873|gb|ADEF01000048.1| GENE 154 194509 - 195516 969 335 aa, chain + ## HITS:1 COG:BS_ywaD KEGG:ns NR:ns ## COG: BS_ywaD COG2234 # Protein_GI_number: 16080898 # Func_class: R General function prediction only # Function: Predicted aminopeptidases # Organism: Bacillus subtilis # 90 331 213 427 455 65 28.0 1e-10 MGVGTGILLAAVAFWGWHSTQATSTEITNEMESAMHNEPVGPAFEADSAYHYIEAQCSFG PRTMNSEAHEQCAEWIIEKFKAFGCHVSTQKAELKGYDSTLLKATNIMAQYKPEAQKRIL LCAHWDSRPWADNDPDSTNWHKPVMAANDGASGIAVMLEIARLLNKDSTLNYGVDFVCFD AEDWGTPQWAEQQDGEDAWALGAQYWSKNLPENYQPFYGILLDMVGGQGAKFYQELASKQ YAPDIINKVWSATSAAGYGSYFIKQDGGYITDDHIPLNENAKIPTIDIIPYYPDCTQSSF GPTWHTIYDTIEHIDKNTLKAVGQTIIQVLFSEEN >gi|281304873|gb|ADEF01000048.1| GENE 155 195429 - 195608 80 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MISVYLLLDCEIYWLDDNAYSSCLSIANIDVQFSSLNSTWIMVCPTALRVFLSICSIVS >gi|281304873|gb|ADEF01000048.1| GENE 156 195683 - 197089 543 468 aa, chain - ## HITS:1 COG:CAC3514 KEGG:ns NR:ns ## COG: CAC3514 COG3344 # Protein_GI_number: 15896751 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Clostridium acetobutylicum # 49 466 53 470 470 423 53.0 1e-118 MKERMQKTLSQVNGCPQRDRSETEWYGGVQTFMWMCEDNIVEVPFDKEHLLEQILSPANL NRAYKAVMRNKGCGGIDKMSCEQLLPWLLTNKDVLICSLIDGSYRPNPVKRVEIPKDNGK MRLLGIPTVVDRLVQQAINQVLTPIYENQFSKTSYGFRPRRGCHDALRGAQRIINEGYIY VVDLDLERFFDTVSHSKLIEILSRTIKDGRVVSLIHKYLRSGVMNKGLFEASEEGTPQGG PLSPLLSNIMLNELDKELERRGLPFVRYADDSMIFCKSKRAAMRVKESITRFIENTLYLK VNKEKTVVSYVRGMKYLGYSFYVMKGKCQLTVHPKSKAKMKSKLKELTSRSNGWGYAKRK QKLKEYIQGWVGYYHLANMKRFLLETDEWLRRRIRMCIWKAWKKVRTKVANLIICGINQY KAYEWGNTRKGYWRIADSPILTRAIDNNRLRSAGYVTLMGAYLEWHPK >gi|281304873|gb|ADEF01000048.1| GENE 157 197716 - 200784 2412 1022 aa, chain + ## HITS:1 COG:no KEGG:BF0868 NR:ns ## KEGG: BF0868 # Name: not_defined # Def: putative TonB-linked outer membrane protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 51 1022 133 1103 1103 1101 58.0 0 MCNLMTIDAKARSLLLVCAIALPCLVFANHGHMVPPKQTIAASTQQNGVRGKVVDKAGEP LVGVTITEVGTANKTISDADGNFILTLSKKNNRITLSYVGFTDQTVVATDNMIVTLQPQE TELSEVVVVGYGTQRKESLTGAMANIKSEKLKDITSASVENMLNGKAAGVYVAPGSGRPG TSGAIVIRGQTSINGATAPLWVIDGIIVGNSPGELNPADIESLTVLKDAASTAIYGSEGA NGVIVVTTKKAKSGRTAFNITAKTGISTLSRGHMQMMDGAEFYDFYKSFANVDQVKFKRW TPDLRNQNFDWFKLATQTGFTQDYNLTVSGGDDKLKSFFSLGYYNEEGAVKGYDYDRYSA RMSLSYQPARWLSITPSFSGSLRNVSDKQHDVGSMYYMMPWDSPYDEQGNLVPNQYSGWV NSKGTNYLYDLQWNHNEEKQYEVVGGLDFKVDFTDWLSFTSSNNYRYSNLENHGYYDPRS SAAGGDTHGRITEWRESWVRRYSSQILRFEKMFETHRVSGMLAYEFNDYEHNYIDAYGTG FVKGFEALSATSKPEKLKGAPSAWAKQSLFTQWKYSYDDKLFAELSLRRDGRSNFGINNR YGNFFSVSGAWSINREKWFTLECVDLLKLRASYGSVGNVPIELYPSYSLYSVGVNYDSMP GALISQIGNPNLTWEKTFTSGIGVDLSLFKNRIRLALDGYVKNTSNILYKVPVTGLTGVT SIWKNIGKMRNTGVELTLGGDIIRTKDLTWAVDLNLTHNANELRDLYKQLDNNGNYIVKP VLISDGTTIAGTAQRILEIGEPVDTYYMKEWAGVNKKDGRPMWYTTDKNGNKVTTSNYAK ASDFKCGKASPDLFGSISTALSYKSFDLHANFGYSIGGQIYSYYRQEFDSDGAYAGDRNQ MKLQNGWTRWQKPNDEATHPRALYNNQDKGNQASSRYLESSDYLKLRSLTLGYNVDLNRF GIKNMRISLTGENLFTITNYSGVDPELPAGTNDKGVLSVMNTGGTYVYPMVRKFMLGLNL TF >gi|281304873|gb|ADEF01000048.1| GENE 158 200800 - 202533 1491 577 aa, chain + ## HITS:1 COG:no KEGG:BF0947 NR:ns ## KEGG: BF0947 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 571 1 588 588 684 61.0 0 MKKIWIIWLAAISLTACDLERLPATQMQSKQVEENPSENLDALVTGMYAQLKSWSDPMHR CGEYAGDNMMIRGSSTDAFFEFISFSRTPNNYRLQSFWDQGYKAIAQASNILKMVKEGQG KEIDNQLGECYFVRGMMYFYLCRAYGRPYYQAPDKNLGVPIVNGTPDDVLENLHLDNRAT VKATYEQAINDLKQAEKLMTIDKGPAYASKEAAQALLSRVYLYMSGTYENPNREYAKLAV EYADKVINSKKYQLLSRNDFMKYNTFTPESNKESIFVVKRVASEFSGYDHYYGIGGMYAN IGGMGWGEMYASAKYIDLLNETGRNDWRPDHYRIIDARAAFIEPTYGKEKTEVFRFIYQN EKGDCNYAQFDIQRDGKDVKCIEKTEKESTITYNLKPIDEQQGTYKIVYHGKEYAGMIDY YIHLNRAYPQFYIVKCSREGEDSHLHSPIISRLGEIYLNRAEAYAKLGEYEKARIDLNTI RERSIPNAGYPSLDASNAGMRIDKERQLELAFQAERSYDVFRNGKSLTRHYPGPHRQQED IPATDYRVTYYIPQKAINAYPGTLTQNPTDNSGVVLK >gi|281304873|gb|ADEF01000048.1| GENE 159 202595 - 202837 66 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881217|ref|ZP_06289904.1| ## NR: gi|282881217|ref|ZP_06289904.1| hypothetical protein HMPREF9019_1316 [Prevotella timonensis CRIS 5C-B1] # 1 80 1 80 80 101 100.0 2e-20 MGLSFVLLLSILLAFIIEHSICGRHSLKFKLPIFRYVIFLVIFFHKIIFALKKKTNFAEL VKKEKFNSKITLILIDKLSI >gi|281304873|gb|ADEF01000048.1| GENE 160 202887 - 203366 539 159 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881218|ref|ZP_06289905.1| ## NR: gi|282881218|ref|ZP_06289905.1| hypothetical protein HMPREF9019_1317 [Prevotella timonensis CRIS 5C-B1] # 1 159 1 159 159 291 100.0 9e-78 MLRSKKIAIVLACALAFFSKVPTYALDKLVFILNNGQQITFALADRPSFTFEGDKLIATD NTGKKQEIALTDVKDYSVENITDDIKQVATTTNQPTLVDGHVYYEGLKVATLVRIIAVNG QEIARYNAPQNGKLDINLASLAKGIYIIQAGKNTIKITR >gi|281304873|gb|ADEF01000048.1| GENE 161 203398 - 205146 1083 582 aa, chain + ## HITS:1 COG:no KEGG:NT01CX_1473 NR:ns ## KEGG: NT01CX_1473 # Name: not_defined # Def: tetanolysin O # Organism: C.novyi # Pathway: not_defined # 94 406 157 475 600 80 24.0 2e-13 MKSKILLATALFGCVLGAGAQNYTMKVQTKDKGLQIIKASDIEKVTFEPANGDVETIGAK RMATYLKRLPIAKGLARDNGSALISGRGEPVNLGTETSNKVPGEDINGFPGYRITKTTKY KLTTGYNEIALFNPTADILYPGCVLKGNTIANGTYAAITDAQTGPVTFSISLAPENMQDA SRCTRTYPNIRMSDYQKAMADWANISFHDCANILIEDIHKVDNEKEFAFKFGFGVKSPIV DVAGNLGLNFNKRKHHLIARIIQKGPSVTVDFPRSGTLLESVPKDLLDDYQPVYVSSINY GRMLFICLDTDAKETDAKQALEFAIKKIKNSGVTVDVNEEMKYKNVMSCSDMKITILGGS KQFQSLVANADLEAVKTFLSTDIPFNQLYPVSMQLRFVSDNAVACVQPADQITCSETVFV KDFKRLVVRLRVTDIEADGGKGAPINSHAIVRGTLGIKDSKSGKEQTLWNAGKDSPLYYG QGKRSFNLQEVAKFTFLHNAEEEDLQDMLEDNYIEFVPHLTNEKIAFRGVYEHQIKVPLD EVVRRFENDEPLVLQLSTGNEKWINIYIKPELRGTNKLGKQK >gi|281304873|gb|ADEF01000048.1| GENE 162 205328 - 208552 2664 1074 aa, chain + ## HITS:1 COG:no KEGG:PGN_0561 NR:ns ## KEGG: PGN_0561 # Name: prtT # Def: trypsin like proteinase PrtT # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 40 398 63 397 840 163 29.0 3e-38 MSQKGVAIDSKLSIAYSPQAKPLAVQSPTTRTGRQVMSAQKLYYVINNGQDKGYIVIAGD DRVAPILAFSAVGAMTQEAIERHPSIHYMYEEYQRQIQWAIEHMPDKPVLTTRASDYKIL IQPLLEYDNDRQTRLPQAISWGQSWPFNQYAPNYNYQGTVYPTVSGCVATGISTVLRWHK WPNHPHGSTNYWWKGRYLMSLNFDGNGPENAAYDWANMPAAVTSGGYNRETGQPLNETQA DNIGRLLRDVGYSVQMDYNPAFTGGSGAYVFNAPTALSEHFGYKRSVRFLERSNYTDNAW LNHVYNELKDYGPVVYTGFSQGGGHCFVLDGFASNGFVHVDWGWNRSQNGWHLLNVLKPG QEGIGGGYGGYSSNQQMLRYLEPDGQDVNPNPNPRPNPNPNPQPEKKSNLYIYGNKPHYT ISVGESKTVVVNVGNNGNDSFVGYLSLSVYKDDNDAYSTLVDEQYTLIGAGYYRPLEFSF KNYNLAPGEYRLAVNYKVGNTYKAIQEQAGTITIKEKTPQPKPEPKPKPQPEPKPEPKPE KKTCVLYICGEKPQYTVRDNQRSTIVVHVGNKGNDSYAGYLSLSAYQNDDNKQATILDEN YLLVNVGACKDVEFTIAANKLKKGEYKLAVNYKDENGNYKAIPEQAASLKIIGNEPNPNP DITPTPKPKPQPKPEVKPFDMVVALKTFANADEGEHIKIPFSVYNYGERYSGTVKLFAVP QGSKDGSDGVLISSGETTIEKSQRINFTFYTNRTFETLVGSKDGRKYDLLLSFTHNNKDV YAHLGYNNQDYRVGELTITKQEKPQPTPNIMRGDIALNTAYFAQGGLWLGSDNSTISASF TTVKVRYSLYSAHGYNGRIRFYVTQNYNAADNVNNMVIEKDIKAQPGYSYIDLTFSTRNL LPGMAYANIQYQTSDNNHYYYYRPHDQVAFYVRNYRYFDFIDPNDKDALGGFGIYKPFDA STKGETYKFGDAPQSYIKVQSIGNGSDNQTEDNNLTTIDQLNATNQFCVAQRLVTDNVEI TVPANCEMSLFNISGQQIMSAPLRFGNNRISLNNIPCGVYLLKTTFGTAKIIKQ >gi|281304873|gb|ADEF01000048.1| GENE 163 208861 - 209451 474 196 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881221|ref|ZP_06289908.1| ## NR: gi|282881221|ref|ZP_06289908.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 196 1 196 196 352 100.0 6e-96 MNKMNILKYFSLSLILAAAIVFTGCSKSDDGNDKVELSDYAKNIVGTWETEGLTFSLADK QTSMNFNVEVKLNAIGGSKIYVNGQEFDAKMLKGLGVKLTADDFPVQRLQFDKDHKVTSY EYDDGWKANDEKSTYDIKNGVLTITSSESTSLKILSMEQNSCIFDALVFVEGMMKEDKLT EKFDVKSAQLKIKRIS >gi|281304873|gb|ADEF01000048.1| GENE 164 210375 - 210992 756 205 aa, chain - ## HITS:1 COG:no KEGG:PRU_2884 NR:ns ## KEGG: PRU_2884 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 28 205 1 178 178 241 67.0 1e-62 MLLAALQAHAQNPLPSTPLHPEEREVDMDSPTFEPMVKVGKVLRGRDSIQYMEFNNIYVY PQPVFKSAQQRMAYNRLVRNIKKVLPIAKEVNRIIIETGDYLQTLPNKKARDEHMKRVEQ GIKEQYTPRMKKLSYQQGKLLIKLVYRECDSSSYQLIQAFMGPIRAGFWQAFAWAFGASL TKKYDAEGVDRLTERIVLQVEAGQL >gi|281304873|gb|ADEF01000048.1| GENE 165 211141 - 213132 1275 663 aa, chain + ## HITS:1 COG:no KEGG:PRU_2899 NR:ns ## KEGG: PRU_2899 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 36 662 4 583 584 442 40.0 1e-122 MKKKLLFGLFLFCCTWVYAQDIPSWQTYLEQLSDVEGIESGDLEEMYEMLSEQAAHPIDL NHATREDLAQLPFLTKQQIEELVEYLDQYAPLRSVGELAMIESLDLTRRKLLSYFVTINP SPTSAFPSMKDLLRYGRNELIAAGKIPFYRRKGDDNGYLGYPYKHWLRYQLSYGRYGKMG FVASQDAGEPWFAGRNKWGYDYYSFYAQANKLGKIKSLVIGRYRAKFGLGVAMNRDFMLG KLTTLAALGNQYNTIRAHSSRSEANYLQGVAATVQVANGLDLTGFASYRYIDGTLNKDST TIATIVTSGYHRTMREMSRKHNTSEFVAGGHLQYFSHGFHVGATAFSTTLDKELQPNIKQ TYRQYAPQGKSFWNASIDYGYISRRLSIQGETATGNHKALATINSISYQCLPNWSVIAIQ RFYSYRYYALLGRSFSEGGHCQNESGIFLGSNWQPFRHLSMMTYVDFAYFPWARYQTSQS SHAWDVMTLATYQHRQWNLQVRYRYKMKQKDTADKSALLNTYTHRVRIAAMLTHSTWFTK AQIDGVYYQGAKHSTGYMVTENVGGKFKRLQAFAALAYFHTDDYNSRLYTYERGMLYTFA FPMFAGKGVRGAFNTRFNLNEQLMMAVKIGATHYLDRQKMGTGYQEINGNTQTDLEMQLR WRF >gi|281304873|gb|ADEF01000048.1| GENE 166 213211 - 213996 533 261 aa, chain + ## HITS:1 COG:MA0797 KEGG:ns NR:ns ## COG: MA0797 COG0726 # Protein_GI_number: 20089681 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted xylanase/chitin deacetylase # Organism: Methanosarcina acetivorans str.C2A # 2 260 16 249 250 82 29.0 8e-16 MILLSFDTEEFDVPKEHGVNISLEEGMRISVEGTNKILDCLQQNGVHATFFCTANFAEQS PQTIRRIMQEGHEVACHGVDHWQPKPTDVFESKRIVESVAGTQVHGYRQPRMFPVSDKDI EKAGYLYNSSLNPAFIPGRYMHLTTPRTWFMREEVMQIPASVTPWVRFPLFWLSLHLLPQ RLYHWMTRRVLRHDGYFVTYFHPWEFYDLNAHREYKMPYIIRKNSGDKMVQRLSNLIKML KKEEEAFVTFTEFAKSKLNKA >gi|281304873|gb|ADEF01000048.1| GENE 167 213993 - 214949 793 318 aa, chain + ## HITS:1 COG:L29089 KEGG:ns NR:ns ## COG: L29089 COG0463 # Protein_GI_number: 15672983 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Lactococcus lactis # 4 316 5 318 318 306 48.0 4e-83 MMRLATISPCYNEEDVLEDSVTRLTTLFNDLIQQGHISADSIMVFVNDGSKDRTWELICK LQQTNKFVRGINLASNVGHQNAMMAGMMTARTWADAVVTIDADLQDDLNAIPLMIHEYTH NNCEVVYGVKTSRQADPLLKRLSATAFYRLQNKLGVKSVFNHADFRLMSRLALDILSTYQ ERNLYLRGLIPMLGLPSACVDDPISERQAGKSKYTLRKMLSLALDGITSFTVHPIYFILY AGLLFIFLSIGIGIYVIHALVVGTAYPGWASIMMSIWLVGGFILLSIGIVGVYIGKIYTE VKNRPLYHVTKIVGADEE >gi|281304873|gb|ADEF01000048.1| GENE 168 214939 - 215364 265 141 aa, chain + ## HITS:1 COG:no KEGG:BT_3390 NR:ns ## KEGG: BT_3390 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 139 4 136 143 119 43.0 4e-26 MKNSFKAYGERHPKLRKDAGRIVRFGLVGTVCSLIHYGIYCLFLMFTNANVSYTAGYGVG LVCNYVLTTYFTFHKKPTKSNAAGFVGSHIVNYLMEIGLLNVFLWLDVSKWLSPILVMVV AVPINFLMLHFVYLHQRKHNS >gi|281304873|gb|ADEF01000048.1| GENE 169 215309 - 216514 510 401 aa, chain - ## HITS:1 COG:no KEGG:BDI_2811 NR:ns ## KEGG: BDI_2811 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 8 390 7 391 393 392 55.0 1e-107 MKNSIQCKCRAFLAKPFFHDKRTLLWLWTLLPIIATVFKLHRNNNYLIFRGVFWHTVNQT SLYGTYPNEYFDVNHYGPLFALVVAPFAVMPVWLGMLFWNVVLSLCLYVAISRSQLKYKQ QIFIYWFCAETLLTSLFMQQFNIAIAAIIIAAYFLIERERDFWAAFLIVLGTFVKLYGVV GLAFFFFSKHKGRFVLSLLLWAVVLFVAPMLISNADYVIGQYHEWYVTLLEKNGENLQSI AQNISLLGMVRRITGNLLYSDLWLIAPALVLFFIPYFRFSQYRNAMFRQTYLASVLLFVV LFSTGSESSSYIIAISGACIWYLSAPWQRNRWDIVFMVLVLMISGFGSSDLYPRCIRHDL IQVYSLKALPCTLVWLKLCYEMMFKNYASVGEDTQSEASRS >gi|281304873|gb|ADEF01000048.1| GENE 170 216867 - 218333 538 488 aa, chain + ## HITS:1 COG:HP1417m KEGG:ns NR:ns ## COG: HP1417m COG2194 # Protein_GI_number: 15646209 # Func_class: R General function prediction only # Function: Predicted membrane-associated, metal-dependent hydrolase # Organism: Helicobacter pylori 26695 # 158 478 222 543 556 181 33.0 3e-45 MRITKSIIELLSVLLLFLFLHFLYYYRSLPDSAIFEILLATNYTEAIEYLQANVLNLRVY GSICAVIFVLSAYSLLILKLEYKRSAILFASAWLTFASFFTVVNLVKDVIKQKTTTRDRL LHHCCSVVSTVFLTRDAINDMQELKQMKQKGNTRPKLLKNNSTIPYVVYILGESTTRNHM GIYGYHLQTTPYLSSLEKTGDLVKFTDVISPNGHTIKVLEKLFTFYRQGAKGKWYEYTDL FSILNQAGYYTSWLSNQESSGIYGNHGRFYAERCKSNSFVCVRDSKNDFTTPCDEHLLPL LDQTLKQTKPKSFIVLHLMGTHMEYENRYPKTFKAFSTNVEQGENNKIKETKAAYDTAVR YNDSIVNAIINRFKDKNALIIYTSDHGEDVMEINKKIAGHGDIDINNQKVEIPMLVYMSK TFQKNYPNITNRIRLSAHHPFMTDDMIHSILDLMEIQTKEYRPSLSIFNKQFNYKRKRIC AERLYPIK >gi|281304873|gb|ADEF01000048.1| GENE 171 218338 - 219117 730 259 aa, chain + ## HITS:1 COG:aq_1742 KEGG:ns NR:ns ## COG: aq_1742 COG0463 # Protein_GI_number: 15606814 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Aquifex aeolicus # 9 259 3 248 251 131 35.0 2e-30 MSHTNLEKKISVVINTYNAEKHLAQVIDSVKHFDEIIVCDMESTDDTITIAKSMGCKVIT FPKGNYNIVEPARQFAIDHATHPWILVVDADELISEQLRAYLYRHIATPNCADGLYIPRK NYFMGQFLHAHYPDYILRFFRKEVAHWPAVIHAVPQINGTISYIPKRNHALAIEHLANDS IATLFKKTDTYSDYEVPRRRHKNYGAGSLFTRPAFRFFKSYILKGGFRDGAPGFIHAVWD AFYQFAVVAKLIEERKNKS >gi|281304873|gb|ADEF01000048.1| GENE 172 219129 - 220298 833 389 aa, chain - ## HITS:1 COG:FN1245 KEGG:ns NR:ns ## COG: FN1245 COG0438 # Protein_GI_number: 19704580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Fusobacterium nucleatum # 4 387 2 380 381 150 33.0 3e-36 MKKKKILFVISYFLDGGVETVLIEYLRNLLKTKAYDLTLAIAYKIDEVEVYHNRIPKEVK VVYLVTNPILLKYKCRKPANKIIKLTDEIFINPIRRYVQSHNLHKLVKKADAVVDFISSQ GSFLRKEKTNKIVFIHSAIEENYKRDPKEGEKQKRKIPTYNHIVTISKAMYQEACRFYPE VKDRICMIYNSVDTDELQRASEELIADERMEKPYILSISRLEEYPKDFSTLIAAYALLRK YYGHTEELYIIGKGPSLQQLQQKTIECGVQDHVHFLGFMSNPYPYIKRCEIFVHSSQYEG LPTVMIEALLLDKMIVATDCPTGPREILNDGKAGILTPVGDIEALAKAMHEALTDKKMQQ LFAEGRAAHKRLFTFEANREAFCKLLESK >gi|281304873|gb|ADEF01000048.1| GENE 173 220303 - 221109 582 268 aa, chain - ## HITS:1 COG:Cj1135 KEGG:ns NR:ns ## COG: Cj1135 COG0463 # Protein_GI_number: 15792460 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Campylobacter jejuni # 1 258 250 514 515 184 39.0 1e-46 METTNPKVSLLVSTYNWKEALNLCVRSIFAQTVLPDEIIIADDGSGEDTWAVIEQLQKES SVPLIHVWHEDKGFRRTEIMNKAIVAASGDYLLQVDGDVILSPYFVSDHLEVCQPNCFVC GSRVKLDKEISEQILSQQKFELNPLKLPFSFVLNSFRSRCLRAFLADRYARKIDHLRGCN MAFWRSDLFKVNGYNEDLLQWGHEDSELAFRLHYAGVHKRALKMGGNVYHLYHPEASKSN EGRHLAELERVQRERLTWCKNGLDKYEI >gi|281304873|gb|ADEF01000048.1| GENE 174 221155 - 221949 491 264 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881231|ref|ZP_06289918.1| ## NR: gi|282881231|ref|ZP_06289918.1| hypothetical protein HMPREF9019_1330 [Prevotella timonensis CRIS 5C-B1] # 1 264 1 264 264 552 100.0 1e-156 MILVKGYGQMCNNILQYAHLYAFGREHGVKVISMRFSYKYRYFAICKKWYHRPMTYLLAK LLIRLRLVDCIMGDNTPEIDRKFAQAPLIACGGWGCRYDKLFRKYRSEIVQLFCIKPAIQ QKVNNWMQKHPKADINLGVHIRRGDYKTWQGGKYFFGDEVYVRLIQEFQALHPQQKINVF ICTNDARLDINKYREACPNVYLSKGSGIEDLQLLSQCDYLMGVKSTFSLWASFYRNIPLY WIMDANKKLENNDFVHFEDVYMSV >gi|281304873|gb|ADEF01000048.1| GENE 175 221946 - 222917 571 323 aa, chain - ## HITS:1 COG:NMA1630 KEGG:ns NR:ns ## COG: NMA1630 COG1560 # Protein_GI_number: 15794524 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lauroyl/myristoyl acyltransferase # Organism: Neisseria meningitidis Z2491 # 9 292 5 283 289 62 22.0 2e-09 MNLLYRLGFGISYLLSMLPLRVLYVASDIIYLILYRLMHYRYEVVHRNVMASFPHSSAAE QEAMIRGFYHWLCDYFVETLKMMSMSKRQMQRRMQFIGTEEVNKVIAKGQSAAIYLGHYG QWEWITSLPFWVSNEAQCAQIYHPLENKWFDKMVKHMREKRGAVCISMSESLRKVVEYRQ KNIPLVLGYISDQVPFWNNIHHWVDFMHQDTPVLTGTERMIKRLGQAVFYADVRRERRGY YTCEFKLITTTPQTWADFQLTDRYFECLQASIEHDPNLYLWSHNRWKRTREEFNLRYDAQ TGRVDLRDLETIMSEKREKESKP >gi|281304873|gb|ADEF01000048.1| GENE 176 223032 - 224180 678 382 aa, chain + ## HITS:1 COG:sll1231 KEGG:ns NR:ns ## COG: sll1231 COG0438 # Protein_GI_number: 16330676 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Synechocystis # 88 381 93 398 399 119 31.0 1e-26 MNHSKLLHIGFDAKRIVRNKTGLGNYSRTLVKNLLHAQDLDLDIRLYAPNAGNEELRNQI PTQPCVRYVYPTGKKHPLAQAWWRFTGIVNDLKRDHIDLYHGLSNELPRGIKASGVKGIV TIHDLIFLRFPKYYHWWDVLIYRYKFRITCREATHIIAISECTKRDIVKYGHVSPDKITV IYQDCDEVFKLPCTEIQLQEVREKYHLPTRFILNVGSIEERKNVLLAVKALKDMPTDIHL VVVGKSTPYTEKVKNYIAQHHLQSRIKLLHHVPFADLPAIYQLAGCFVYPSRYEGFGIPI IEAIHSGLPVVACTGSCLEEAGGAECLYVHPDDVQAMREALLTMLNDTNRNGRMARAKAY VQRFDTENVTRQLINLYKKFME >gi|281304873|gb|ADEF01000048.1| GENE 177 224705 - 226699 1578 664 aa, chain - ## HITS:1 COG:PA1689 KEGG:ns NR:ns ## COG: PA1689 COG1368 # Protein_GI_number: 15596886 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Pseudomonas aeruginosa # 269 591 299 614 700 134 28.0 5e-31 MEKMKYSVESSKSKGAKQYLAPFMSLVVNIFMAFVVYLIARVAFLLENFSYFSEGLSFSQ VGEWFWGGYIFDRSAITYTNSLYIVMMLFPLWIKERRGYHLLCKWVFVVVNTLTLVINLC DAVYFPYTLRRTTTSVFREFSNENNLLDVFWGELWGHWYLLLLAIAVVWLMWKLYLMPRT HHTYYATLGSRIGFGVVQLLLLLAITPLAIGACRGGLESGIRPITVNNANQYVNRPTECA IVLNTPFALIRTIGKDVFEVPPYFDNLEATERVFSPIHRPISTHPFQKKNVVVLIVESFG REYIGALNKDLENGNYKGYTPHVDKLIQQSATYQYSYCNGRKSIDGMPSVLCGIPMFKEP FVLSPASMNNYTSMAGLLGKEGYHTAFFHGANRGSMGFMAFANKVGFQQYFGRQDYAADK RFGGDADFDGHWGIWDEPFLQYWATKIGELKEPFMTACFTVTSHTPYVIPEKYKKVYPEE GIVIHKCIRYTDMAIGKFFETAKKQPWYKNTIFVLTSDHTNLSDHQQYQTDIGGFCSPIV IFDPSGEVKSGIYPGIAQQIDILPTVLSILGYNKPFLSFGCDLMTTPMKETYAVNYLNGI YQYCKYGYVLQFDGQHTKAIYRLDDKLMQHNLLGKVKEQAQMEHELKAIIWQYMYRMVHD KLMP >gi|281304873|gb|ADEF01000048.1| GENE 178 226730 - 228562 184 610 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225084369|ref|YP_002657150.1| ribosomal protein S16 [gamma proteobacterium NOR51-B] # 389 595 25 228 309 75 28 2e-12 MKEFIQVFRRFVPPYKRYLWASVLFNILSAVLNIFSFAALIPILNILFKVNQVQVTTLMP WPEAIKDLPRMLANNANYYVQVMIDTYGSTTTLLLIGLFLAFMTFLKTAAYFLSSATIMP IRTGVVRDIRNQLYRKITSLSLGFFSEERKGDILARMSGDVQEVENSIMASIDMLFKNPI LIIAYFATLLIISWELTLFTIVFVPIFGWLMGIVGRKLKQNSIKAQSLWSDTMSQVEETL GGLRIIKAFCAEEKMNKRFDKINSDYRNHILRVNVRQQMAHPMSEFLGTVMIVIVLWFGG TLVLNQQTLSGPTFIYYLVMLYSIINPLKELSKASYSIMKGLASMERVDKILNAKVTIQD SPHPVPIKEFKHQIEFRDVSFRYGEQWVLRHINLVIPKGKTVALVGQSGSGKSTLVDLIP RYYDVQEGEVLIDGINVRDLGIHDLRQLIGNVNQEAILFNDSFYNNISFGVDHATQAEVE QAARIANAYDFIMESEDGFDTCIGDRGGRLSGGQRQRVSIARAILKNPPILILDEATSAL DTESERMVQDALEKLMSTRTTVAIAHRLSTIKHANEICVLHEGRIVERGTHEELMSKEGY YKKLHDMQER >gi|281304873|gb|ADEF01000048.1| GENE 179 228837 - 229301 507 154 aa, chain + ## HITS:1 COG:MT0138 KEGG:ns NR:ns ## COG: MT0138 COG2030 # Protein_GI_number: 15839511 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Mycobacterium tuberculosis CDC1551 # 8 142 6 140 151 139 47.0 2e-33 MEKVIINSYEDFASYLGKDLGASEWLEVTQDRINLFADATLDHQWIHVDEARAQVESPYK STIAHGYLTLSLLPHLWEQIIEVNNIKMLVNYGMDKMRFGQPVLTGSRVRMTAKLHAISN LRGICKTEINFKIEIEGQRKPAVEGIATFLYYFI >gi|281304873|gb|ADEF01000048.1| GENE 180 229436 - 230227 511 263 aa, chain - ## HITS:1 COG:no KEGG:PRU_2554 NR:ns ## KEGG: PRU_2554 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 13 263 1 252 259 250 46.0 3e-65 MKLLKKFTLLLLLLVSSVAVQAQCDMKNTAFTSGELLTYNLYFNWKFVWVKVGNASMSVV RSNYKGQPSYRASLITRGNRKADHLFVLRDTLQAYTSLNLAPQYYRKAAQEGSRYYIDEV FYTYPNKKVYVKQHQITSSGEHLWRQGYKNECVFDMLNIFLRARSFDVSKWRKGYAYRFT MVDGEKSMPAMLKYHGKTHVKADDGKKYRCLQLSYMEKEDNSYKKIVDFFVTDDTNHIPV RLDMFLRFGSAKAFLVGKRGVKN >gi|281304873|gb|ADEF01000048.1| GENE 181 230308 - 232359 1531 683 aa, chain - ## HITS:1 COG:no KEGG:PRU_2555 NR:ns ## KEGG: PRU_2555 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 41 678 14 639 650 729 56.0 0 MKMRHLYFFNYLKSLRCNAGKVLTLSAVWYVILLWLSSSMMMSCARMGSPDGGWYDETPP KVVSTSPKEGSVHVTDKKIYIQFDEFIKIDNPTEKVVISPPQIEAPEIKSQGKRIVVELK DSLKPDLTYTVDFSDAISDNNEGNPLGNYTYSFSTGSKIDTMEVSGYVLEAENLEPIKGI LVGLYANHSDSIFRHKPMLRVSRTDSRGKFTIRGIAPGTYRIYALQDVDGNYFYNQKSEK LAFTHDLITPSSKPDIRQDTIWADSLHIKNILQVNYTHFLPDDITLRAFTEIQTNRYLIK TERKEPNFFSLFFSYGSDQLPQIKGLNFNDKDAFIMESTPRGDTLTYWLRDTTLIHQDTL AVQLSYQATDSVGHLHQQVDTVSLLSKIPYAKRLKLQQKKIDEWTKKQEKAKKRGEPYDS IMPKENLDVQVAVGSAMTADKNVSFHFETPLAKIDTSKIHLYAKHDTLWYVSPYEFEQQR DTTVKALNKAYLEHTRDYVLRGEWRPGIEYSLELDSAAFIDIYGVASTKKKQGFSVQSND ELSTILLTIVGAKQSPMVVQLLDTSDKPVKQTPVVNGEAQFFYVKPGDYYARLFVDTNGN GRWDTGNYDENRQPEEVYYYPKKITCRAKWDFNETWNLTQTPLYQQKPAQITKQKGEQQR KIQNRNAKRALDLGKKYVPGMLK >gi|281304873|gb|ADEF01000048.1| GENE 182 232376 - 233911 1140 511 aa, chain - ## HITS:1 COG:no KEGG:PRU_2556 NR:ns ## KEGG: PRU_2556 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 503 1 502 502 797 74.0 0 MGLTSIASQFFLSRQKEIERCARHTESMQQQVLMNLLEQAKDTEYGRSHLFGSIKSYEEY VKNVPVCTYEELKSDIDRMRHGEENVLWPGQVKWFAKSSGTTNDKSKFIPVSNEALHHIH YQGGKDTVALYLLNRPDSRLFDGKALILGGSHSPNYNVHNSLVGDLSAILIENINPLVNV MRVPKKSTALLQDFEVKRDRIAKETLHKNVTNISGVPSWMLSVLVRVMELSGKTHLEEVW PHLEVFFHGGIPFTPYRPQYEQLITSPQMCYMETYNASEGFFGIQSDLDDSSMLLMTDYD VFYEFIPMDEFGVKEDPTVVPLEGVELDKNYAMLISTSSGLWRYMIGDTVKFTSKNPYKF IITGRTKYFINAFGEELIMDNAEKGLAYACEQTGAEISEYTAAPVYMDSNAKCRHQWLIE FVKKPKSLQQFASILDKRLQELNSDYEAKRFHNVTLQHLDIIMARTNLFNDWLKMKGKMG GQHKVPRLSNSRKIIEELLELNASEQNLVKG >gi|281304873|gb|ADEF01000048.1| GENE 183 234798 - 235448 616 216 aa, chain + ## HITS:1 COG:BH3587 KEGG:ns NR:ns ## COG: BH3587 COG0546 # Protein_GI_number: 15616149 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Bacillus halodurans # 1 214 1 210 215 108 31.0 5e-24 MHLKAIILDFDGTLADTKTLITNTMLEVIEQLHLEPRTREQCAEMIGLPLKQTFTDLIPM TDEMGEQCVATYDKVFHENNVPSAVPLFPNVLETLRELHRLGYVLTIASSRSKHSLLNFV DTFGLKDIIPYVVSANDVSNAKPHPESVLMTLTHLNIQPQEAMVVGDTVYDIQMGQNANV FTCGVTYGNGTHEQMTSLHTDFIIDDFKELLKIVKR >gi|281304873|gb|ADEF01000048.1| GENE 184 235585 - 236244 604 219 aa, chain - ## HITS:1 COG:PAB1839 KEGG:ns NR:ns ## COG: PAB1839 COG0035 # Protein_GI_number: 14520996 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Pyrococcus abyssi # 3 219 10 220 232 124 35.0 1e-28 MKIINFSESNSIMNQYLMEIRDVDYQKNRLLFRNNIQRIGELEAYEISKTLDYEKKDVTT PLGVAQVNIPANEVVLATIFRAGLPFHNGFLNIFDHAGNAFVSAYRQYIDKEQHEVGVHV EYLATPSIEGKTLIIADPMLATGASMELGYQAFLTKGTPKRIHVACVIATPEGIDHIKKT FPAEETTIWCGAIDPGLNEHKYIVPGFGDAGDLCYGNKL >gi|281304873|gb|ADEF01000048.1| GENE 185 236489 - 238102 1599 537 aa, chain + ## HITS:1 COG:VC2738 KEGG:ns NR:ns ## COG: VC2738 COG1866 # Protein_GI_number: 15642731 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Vibrio cholerae # 9 537 14 541 542 771 71.0 0 MAKFDKSVLEKYGITGTTEVVYNPSYELLFEEETKEGLEGFEKGQETELGAVCVQTGIYT GRSPKDKFIVDDANSHDTVWWTTDEYKNDNHKMTESTWKVVNELAKKELSNKRLFVVDGF CGANKDTRMKIRFIVEVAWQAHFVTNMFIRPVNQEELDQDPDFIVYNASKAKVENYKELG LNSETCVAFNVTTKEQVILNTWYGGEMKKGMFSMMNYFLPLKGMASMHCSANTDKNGENT AIFFGLSGTGKTTLSTDPKRLLIGDDEHGWDDNGVFNFEGGCYAKVINLDKESEPDIYGA IKRDALLENVIVDENGKIDFTDKSRTENTRVSYPIYHIKNIVKPISAGPAAKQVIFLSAD AFGVLPPVSILNEEQTKYYFLSGFTAKLAGTERGITEPTPTFSACFGQAFLELHPTKYAE ELVKKMKKNGAKAYLVNTGWNGTGKRISIRDTRGIIDAILNHSIDEAPTKTIPYFNFVVP TKLEGVATEILDPRDTYSDASQWDEKAKDLAQRFIKNFDKYTTNEAGKALVAAGPQL >gi|281304873|gb|ADEF01000048.1| GENE 186 238245 - 239780 1216 511 aa, chain + ## HITS:1 COG:STM0035 KEGG:ns NR:ns ## COG: STM0035 COG3119 # Protein_GI_number: 16763425 # Func_class: P Inorganic ion transport and metabolism # Function: Arylsulfatase A and related enzymes # Organism: Salmonella typhimurium LT2 # 1 495 1 467 497 150 26.0 7e-36 MAAIIATPAVSSVVCAQTNQASPSPNVIVIVADDLGYGDLQCYGAQRVSTPHVDSLAKSG IRFTNAHAVAATSTPSRYSLLTGQYAWRRKDTDVAAGNAGMIIRPGQFTMADLFKSKGYV TSAIGKWHLGLGDQTAEQDWNAPLAQSLGDLGFDYHYIMAATSDRVPCVFIENGKVANYD PSAPIEVSYKKPFPGEPTGLTNPELMYNLKPSHGHNMAIVNGIGRIGYMKGGGKALWKDE NIADSITAHAVNFIRENCNKPFFMYFATNDVHVPRFPHQRFRGKSPMGLRGDAIVQFDWS LGKIMQVLDELGLRENTLIILTSDNGPVIDDGYQDQAEEKLGGHRPSGPFRGYKYSAFEG GTAVPFIVSWPAKVKAKQESRALVSQVDLMKTLANLLQARLPKGSAPDSQNGLSALLGTD KTGRPYVIEQSSAHVLSVRTAKWKYIEPSNGKPMITWGPKIETGNCPTAQLFDMSKELFE RENVATSHPDVTDKLARILQTEREKGLIPKH >gi|281304873|gb|ADEF01000048.1| GENE 187 239944 - 242133 1737 729 aa, chain + ## HITS:1 COG:slr0288 KEGG:ns NR:ns ## COG: slr0288 COG3968 # Protein_GI_number: 16331104 # Func_class: R General function prediction only # Function: Uncharacterized protein related to glutamine synthetase # Organism: Synechocystis # 17 729 18 724 724 622 45.0 1e-177 MNNFRFHVVAEASKKAPLKIVTPKERPSAYFGKYVFNRAKMQKYLPENVFQQLSDVIDNG AHFNRAIADAVATGMKQWAQENGATHYTHWFQPLTEGTAEKHDAFVEFDGKGGMIEEFSG KLLIQQEADSSSFPNGGIRNTFEARGYSAWDPTSPVFIVDDTLCIPTIFISYTGEALDYK APLLRSLHAVDVAATAVCQYFDTQIKKVHTNLGWEQEYFLVDEDLYHARPDLMLTGRTLM GHDAAKNQQMDDHYLGTIPERVQAYMKDLEIRALELGIPCKTRHNEVAPNQFELAPIFEE CNLANDHNMLLMSLMKRVARKHGFRVLLHEKPFAGINGSGKHNNWSLSTDTGVLLHAPGK TAEDNLRFVVFLVETLMCVYRHNGLLKASIMSATNAHRLGANEAPPAIISSFLGKQLSDL LHHIEVADKDDLFTLNGKQGMMLDIPEIPELFLDNTDRNRTSPFAFTGNRFEFRAVGSEA NCACALIVLNTAMAEALNDFKQRVDELIAKGEDKTSAIIDVLRKDIKTCKPIHFDGNGYS DEWVEEAKRRGLDCENSCPIVFDRYLDEQSIEMFESTGVMARNELVARNEVKWEMYTKKI QIEARVMGDLTMNHIIPVATHYQSQIAENVSHMFNIFERTEAEKLTCRNKKIIREIAERT QRIETGVEELINARKIANKITSERDKAIAYHDTVAPKMEEIRYQIDKLELIVSDELWTLP KYRELLFIR >gi|281304873|gb|ADEF01000048.1| GENE 188 242265 - 243953 260 562 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 349 552 83 284 287 104 32 3e-21 MIQRDNSVDKGFEAHCFHPLSTDVERPQQLNNPFNYRPHPLALLAAEQLQRYVASQPAWQ EEIALGKMFGVLVVENAQHSLGYLAAYSGQIGGRSNWLGFVPAVFDYLEPQGYFKNQEAF ITQINARVKCLEVDEDYQTLKTKLKEYDQQAAAQLTLFQEEMKVAKKRRDQQRRELTLNV EQQAALIKESQFMKAEYKRLKERLRIGRTPLLQLLAEHEQQMEDAKAQRRTLSDDLQRWL FSHFVMLNAKGEQRNLLTIFAQTAQGVPPAGAGECCAPKLLQYAYLHRLKPVCIAEFWWG ASPKTSVRHHGQFYPACRGKCLPILSFMLQGLKVDAEQSVAEQHSQLHVVYEDDALIVVD KPAGILSVPGRSQRPSVYSILRSQMPSSVELFSVHRLDMATSGLLILAKNSVVYRHLQRQ FRTHHIQKEYIAILEGALSQREGVVTLPLRPDPFDRPRQVVDWEHGKKAVTSYRVLNVRH GKTWVALFPETGRTHQLRMHCAHAEGLNCPILGDPLYGHHANRLYLHATSITFEHPISGQ LLTLHAQPPADFQDVFMGRKHG >gi|281304873|gb|ADEF01000048.1| GENE 189 244789 - 245031 167 80 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLSCYFTKKRSSKICEIEKINRQTTCKNGLILTNKTSIEAKTLNLRSWKHVLEVLFTCF NGIKACKLQAYLNALTAKNW >gi|281304873|gb|ADEF01000048.1| GENE 190 245196 - 245345 72 49 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLHITNFTNAAKLLFFIIKISLFNERLVPQNEVQKKACKTIQNLQSQIF >gi|281304873|gb|ADEF01000048.1| GENE 191 245459 - 246433 875 324 aa, chain + ## HITS:1 COG:TM0177 KEGG:ns NR:ns ## COG: TM0177 COG1284 # Protein_GI_number: 15642951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 17 295 4 281 283 150 33.0 3e-36 MTDMKKTGLKNPFSANELKDYVFITIAMMFYCIGWTIFLLPNDIATGGVPGISSVLYWGL GIPVQYSYFAVNAILIIFALRILGLRFCIKTIYGIIILTALTSLVQTYMKDVSLLSDQPF MASVIGAVFCGSGVGLGLSANGSTGGTDIVAAIVNKYRDISLGRVILLCDVVIISSSFLA LHDWEKVIYGYVVLFITSFCVDQVVNSMRRSVQFFIISEKYEEIGRQINENPHRGCTVIN AQGFFSGKNMKMLFVLAKKSESNKIFYLINEIDPAAFVSQSAVIGVYGEGFDRFKVKRKK TNHHKGIEPTAVDASPTPIEEVNG >gi|281304873|gb|ADEF01000048.1| GENE 192 246646 - 247299 776 217 aa, chain + ## HITS:1 COG:FN0455 KEGG:ns NR:ns ## COG: FN0455 COG1592 # Protein_GI_number: 19703790 # Func_class: C Energy production and conversion # Function: Rubrerythrin # Organism: Fusobacterium nucleatum # 41 211 3 173 179 181 54.0 6e-46 MKKKFICTVCGYAYEGEAAPKECPVCHAKAEKFKAFDPEAIKGTKTEENLKAAFAGESQA HTKYLYFASKAKKEGYEQLAAIFEETARNEKEHAKVWYKFLHGGDIPTTTDNIKEAADGE NYEWTDMYVNMAKVAEEEGFPEIAVKFRAVGAVEKHHEERYRKMLKNIEDEIVFSRDGSC VWQCRNCGHIVIGKKAPAVCPVCDHPQSYFQIEPDNL >gi|281304873|gb|ADEF01000048.1| GENE 193 247865 - 249172 1726 435 aa, chain - ## HITS:1 COG:SA0731 KEGG:ns NR:ns ## COG: SA0731 COG0148 # Protein_GI_number: 15926453 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Staphylococcus aureus N315 # 2 429 3 423 434 570 69.0 1e-162 MVIEKVHAREIIDSRGNPTVEVEVTLENGVMGRASVPSGASTGENEALELRDGDKARYGG KGVLKAVENVNNIIAPALKGFCVLEQRKIDYKMLALDGTPTKSKLGANAILGVSLAVAHT AAKALHLPLYRYIGGVNTYTLPVPMMNIINGGAHSDAPIAFQEFMIRPVGAPSIKEGIRM GAEVFHALAKLLKKRGLSTAVGDEGGFAPKFDGIEDALDSIIQAIKDAGYEPGKDVKIAM DCAASEFAVQENGEWFYDYRQLKSGMPKDPNGKKLTADEQIAYLEELITKYPIDSIEDGL DENDWDNWVKLTEKIGDRCQLVGDDLFVTNTKFLEKGIKMGAANSILIKVNQIGSLTETL EAIEMAHRAGYTTVTSHRSGETEDTTIADIAVATNSGQIKTGSMSRTDRIAKYNQLIRIE EELCCSAKYGYCKLK >gi|281304873|gb|ADEF01000048.1| GENE 194 249674 - 251527 1847 617 aa, chain + ## HITS:1 COG:MT2530_2 KEGG:ns NR:ns ## COG: MT2530_2 COG0674 # Protein_GI_number: 15841979 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Mycobacterium tuberculosis CDC1551 # 216 616 3 400 425 374 51.0 1e-103 MEEGLRVKELENVVVRFSGDSGDGMQLAGNIFSTVSATVGNQISTFPDYPADIRAPQGSL TGVSGYQVNVGENVHTPGDKCDVLVAMNAAALKTQRQFAKPTATYIIDTDNFKPFDLQKA KFATPDYLKELGIDADSVIACPLTTLVKACLKDSGMDNKSILKCRNMFALGMVCWLFDRD LQLVNNFLQQKFHKKPAVLEANIKVVRAGYDYGANTHASVPNTYRIEARNKVPGRYMDIT GNKATAYGLMAATEKAGVKLFLGSYPITPASDILHELAKHKSMGVITMQCEDEISGCATS IGASFAGALGVTSTSGPGICLKSEGMNLAVMDELPLVIIDVQRGGPSTGLPTKTEQTDLL QVLYGRNGESPMPVITPTSPTNCFHAAYMACKIALEHVTPVVVLSDAYIANGSSAWPIPQ MDKLPAITPHRVTPEQKGNYTPYQRDPETLVRYWATPGMEGYEHIIGGLEKDSETGQISN NPSNHQQMVNNRAEKVARIPVPDLKVLGEADDADLLVVGFGGTFGHLYTAVEELVKSGKK VALAHFEFINPLPANTEEVLKRYPKVVVAEQNMGQFASYLRTKIDGFVPYQFNQVKGQPF VVAELINAFEQILEGKA >gi|281304873|gb|ADEF01000048.1| GENE 195 251524 - 252531 872 335 aa, chain + ## HITS:1 COG:Rv2454c KEGG:ns NR:ns ## COG: Rv2454c COG1013 # Protein_GI_number: 15609591 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Mycobacterium tuberculosis H37Rv # 4 334 47 372 373 312 44.0 6e-85 MTAFTANQYKIGQPRWCPGCGDHFFLANLHKAMAEIGVPPHEIAVISGIGCSSRLPYYMN TYAMQTIHGRAASIASGAKVVNPDLTIWQISGDGDGLAIGGNHFIHALRRNININMVLLN NRIYGLTKGQYSPTSPRGFVSKSSPYGTVEDPFQPAELCFGARGHFFARAVANDGPSVIA ILQAAYRHKGAALCEIMQNCVIFNNGAYDPIYTRDGRKQNAIYVEHGKPLLFGENNEYGL MQEGFGLKVVKLGENGITEKDILVHNAHEEDSTLHAKLAMMDNEHGFPVALGVIRDVEAP TYDDMVNKQIEEVKEKKAYHNFTELLETNDIWEVK >gi|281304873|gb|ADEF01000048.1| GENE 196 252845 - 254506 1278 553 aa, chain - ## HITS:1 COG:ECs4625 KEGG:ns NR:ns ## COG: ECs4625 COG2985 # Protein_GI_number: 15833879 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Escherichia coli O157:H7 # 8 552 7 557 561 313 35.0 4e-85 MDWINGLFTIHSSVQTVVIVSLIIAAGTALSKFKFKGISLGVSFVFFVGIVAGNIGLSID TATLDYIETFGLVLFVYTLGLYVGPNFFGAFRHEGTTFNLWGLGVIFLGTLMAVALCPLT GISLSNMVGLLCGATTNTPALGAAQQALGHLGHPSDSIALATAVTYPLGVVGVILAILLM RKLFVKPDDLEPKLPIDDDQTFVCQFLIINPAIEGKTIGQLAINTPLKFIVSRLWRQGEV IVPMVNTDLHTGDSLLVVTTPAAVSGLEILFGKRVERDWNQEKIDWNYIDSNVESRVIVL TRPVLNGKRLGRIHLRETYGVNVSRVIRGDVKLLATNDLRLQYGDRLTVVGEPKAVENAE RFLGNSVKTLNEPNVGSIFFGMILGLMLGSIPISLPGMDSPIRLGIAGGPIIMGILVGAL GPHMHFISYTTRSASLMLRRMGLAMYLACLGLDAGKNFLDTVIRPEGLLWVGVGFVLTLV PVLIVGLFALRSKKFDYGTICGILCGAMANPMALTYANDTIDGDTPSISYATVYPIGMFI RVIIAQVLIMFFV >gi|281304873|gb|ADEF01000048.1| GENE 197 254733 - 256379 1230 548 aa, chain - ## HITS:1 COG:no KEGG:BF3256 NR:ns ## KEGG: BF3256 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 266 548 34 328 328 119 29.0 3e-25 MRTKTIFSTVFAYLCMLLVFVVTSCKPEEAVDEIKNKLHEDPVKAVFTLQEGSIKGNKSF NQQLVLADFTPSTTPAQQIVWEITPKEGWHVSSALKHFQVKSVKENPAVVYHLSIEYYNS KGEKINHQFFDLGQDKIHQHFFSLYKTTTVLGKTGKARVADKSQLPYDYCYVDQYKGVDM GATNPVGFDGLLQIVHPNEAFNLSVDLLHAAQSKYDKDNRLSPFYLPAAVLTSTGQWDIT VSLPFDVDGQVAQGDVKPLDASLFQPKTVEIEVYEGHLHGEKTFHQNGYSKNNQCLGKSY KLKYTLENNQWVADKANPTSVNVMGNADKFVRYAFSLRYFNDKHEDITGQIVNGGEDQHY QHFFTVSDVKPSYGGVEEKSDGNHPDFFQYTYCDTKPWDKTVHFDNAAFLDDNNPIGIKG FFTFLRSRKQFTLNIRLMRARQSKRVGDKPSPFYAPSLQQEAKETWMPTIKIPVNVYMDW NEKGLDLAVWENPTLVESTQLKDLSEHDQRTVLSLMKAFGIKDIKTALAEFYWNMADTPT HDGKGFWF >gi|281304873|gb|ADEF01000048.1| GENE 198 256521 - 258641 1453 706 aa, chain - ## HITS:1 COG:PA0781 KEGG:ns NR:ns ## COG: PA0781 COG1629 # Protein_GI_number: 15595978 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Pseudomonas aeruginosa # 370 702 348 684 687 73 24.0 1e-12 MNKKEKLWLVILLSCMVMSNSTLVNAQDVEHIPRQHLKDTITLGEVVVKSKRQLVTPNSI STTLTHDDIARAAGKSLASMLENVSGVSMLQTGASVAKPVIHGMYGNRILVVSRGAKLTG QQWGIDHAPEIDKNAYNDVVVVKGSESVRYGAEALGGIILMNAKPLPYGSKGVQADVMSY YGSNGRQMGTVGQIQGTLPFNRQIAWSLQGTFEQSGDRSTAAYLLNNTGMRQRNAAFSLG YQRDPWKFETGYSLFWQQMGVMRSAQMGNEQLLQERIRIGQPVEFTPFTYQIDYPFQRVA HHSAFFNVYYRPSSSMKWSWETTYQADDRRENRIRRMNHSDIPSVSLRLQSLQSQLHGSR LFNRWKAEWGVQGMLMKNSNERGTGVVPVIPNYTETTFGTYAIAKYLGDIWGTEAGVRYD NQLTRADGYDWTGHRYGGNRHFENVTFTLGGHQHLGNLLTLATNFGMAWRAPHVYELYSN GNELSSGTFVKGDSTLRSEQSYKWVTSLCYHDSWVHARIDAYLQWINHYIYDYPTRQNVV VVSGAYPVFQYVQTNALFRGVDVDVHLYPLQTLDYRVYGSWIWANEQRTKAYLPYIPSFK FTQQLTWTPSFRGAWQPSVGIEHRYVAKQRRFNVATDLTDDTPAAYHLVGFNCGVTWKMP HRQQLSLLFEGTNVLNQLYKEYTNRSRYYAHDLGRDIRCTLRWKLN >gi|281304873|gb|ADEF01000048.1| GENE 199 258801 - 259097 151 98 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881255|ref|ZP_06289942.1| ## NR: gi|282881255|ref|ZP_06289942.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 98 1 98 98 174 100.0 1e-42 MAWMMVLTFILALFVKDFHAHTSPVPHFDKIEQHHASVQSYCYICNFDLCKMSMPKLFVW QPVLLVKHVLQPLLAEQIVYRQPVEINAHSPPFLIHNS >gi|281304873|gb|ADEF01000048.1| GENE 200 259069 - 259320 100 83 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKVSTIIHAINIRLILLVVIRTHKSLCYLKSKSRQKNGYYDVLSPFNTYFLIILTDYFVY YIFVNTNSPNRLMQRKNATYKNK Prediction of potential genes in microbial genomes Time: Sat May 28 07:34:19 2011 Seq name: gi|281304846|gb|ADEF01000049.1| Prevotella timonensis CRIS 5C-B1 contig00015, whole genome shotgun sequence Length of sequence - 35201 bp Number of predicted genes - 27, with homology - 26 Number of transcription units - 11, operones - 6 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 2 - 499 182 ## 2 1 Op 2 . + CDS 496 - 855 262 ## gi|282881257|ref|ZP_06289943.1| hypothetical protein HMPREF9019_0531 + Term 880 - 923 4.7 - TRNA 1175 - 1256 59.8 # Leu CAA 0 0 3 2 Tu 1 . - CDS 1524 - 2291 570 ## gi|282881258|ref|ZP_06289944.1| putative lipoprotein - Prom 2358 - 2417 6.2 + Prom 2255 - 2314 10.1 4 3 Op 1 . + CDS 2445 - 5294 2394 ## COG0495 Leucyl-tRNA synthetase 5 3 Op 2 . + CDS 5291 - 6268 948 ## COG1284 Uncharacterized conserved protein 6 3 Op 3 . + CDS 6216 - 6854 354 ## PROTEIN SUPPORTED gi|71274727|ref|ZP_00651015.1| Ham1-like protein 7 3 Op 4 . + CDS 6867 - 8882 1544 ## PRU_2529 hypothetical protein 8 3 Op 5 . + CDS 8858 - 10138 499 ## Nmul_A0278 glycosyl transferase family protein - Term 10776 - 10821 3.2 9 4 Op 1 . - CDS 10869 - 11033 307 ## COG1592 Rubrerythrin 10 4 Op 2 . - CDS 11058 - 12122 482 ## COG0859 ADP-heptose:LPS heptosyltransferase 11 4 Op 3 . - CDS 12123 - 12725 624 ## PRU_2563 hypothetical protein - Prom 12746 - 12805 6.9 + Prom 13014 - 13073 5.3 12 5 Op 1 27/0.000 + CDS 13093 - 13329 354 ## COG0236 Acyl carrier protein + Term 13345 - 13393 8.1 13 5 Op 2 1/0.000 + CDS 13415 - 14677 1523 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Term 14685 - 14743 17.7 14 6 Tu 1 . + CDS 14790 - 15710 835 ## COG0571 dsRNA-specific ribonuclease + Term 15772 - 15816 4.6 + Prom 15887 - 15946 5.6 15 7 Op 1 . + CDS 15966 - 17522 1079 ## COG1404 Subtilisin-like serine proteases 16 7 Op 2 . + CDS 17523 - 19763 1678 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 17 7 Op 3 . + CDS 19783 - 23091 2867 ## BT_1552 hypothetical protein 18 7 Op 4 . + CDS 23139 - 24506 1165 ## Cpin_3049 RagB/SusD domain protein 19 7 Op 5 . + CDS 24524 - 24745 273 ## gi|282881274|ref|ZP_06289960.1| putative lipoprotein 20 7 Op 6 . + CDS 24759 - 26030 1116 ## gi|282881275|ref|ZP_06289961.1| putative lipoprotein + Term 26251 - 26310 2.2 + Prom 26298 - 26357 6.8 21 8 Tu 1 . + CDS 26446 - 28074 1415 ## COG3525 N-acetyl-beta-hexosaminidase - Term 28105 - 28173 8.0 22 9 Op 1 . - CDS 28224 - 30041 1498 ## COG0821 Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 23 9 Op 2 . - CDS 30056 - 30565 706 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 24 9 Op 3 . - CDS 30590 - 31210 237 ## PRU_2856 hypothetical protein 25 9 Op 4 . - CDS 31291 - 32784 1457 ## COG1508 DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog - Prom 32844 - 32903 5.2 26 10 Tu 1 . - CDS 32967 - 33605 551 ## PRU_2854 hypothetical protein - Prom 33689 - 33748 3.1 + Prom 33731 - 33790 3.3 27 11 Tu 1 . + CDS 33816 - 35138 1107 ## PRU_2853 hypothetical protein Predicted protein(s) >gi|281304846|gb|ADEF01000049.1| GENE 1 2 - 499 182 165 aa, chain + ## HITS:0 COG:no KEGG:no NR:no NCKEINLTWLENRVNAKIESVQNYPLPKATKCEILKEWASTEQTAKQAIEQVQELYTLPH HPKFEIQDQQIICTNYKEWLERMSTYTADKVFVEHYRLICNVLESIDKLRYYEKKNNIPK RMIDKIQSRITSPEAYLQLTAIGYFTKEPTTEQNCRRFPYIYSYQ >gi|281304846|gb|ADEF01000049.1| GENE 2 496 - 855 262 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881257|ref|ZP_06289943.1| ## NR: gi|282881257|ref|ZP_06289943.1| hypothetical protein HMPREF9019_0531 [Prevotella timonensis CRIS 5C-B1] # 44 119 1 76 76 145 100.0 6e-34 MKVQRERAGRKDSDTHTITITLTAADVKDVFVQIRLLFNKSVGMEFNPFFTKVVFMKNIR KHFSYLGEYRKEIQEWAFNVALRYEFIQQTGEGMFRINPKIMTMRTGKTPQEVVDFLEN >gi|281304846|gb|ADEF01000049.1| GENE 3 1524 - 2291 570 255 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881258|ref|ZP_06289944.1| ## NR: gi|282881258|ref|ZP_06289944.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 255 1 255 255 542 100.0 1e-153 MMNYQCKIGCIGLVTALMICSCNEQKQPHPMSSSLSSYDEMVDTTQIYHHITLDSTEQLQ IYYPHFKRIDLVCGTMPQPTDTSVIMVCAAAFTGQLKKEFSHENIAGNHISGGVYHKGYP CKANTGAFVYAHRQWKFVYEDYAAEVARAADESGMGFGQMMLINNGLRMPANVVGKNICR ALCERNGKLCIIESRQPLLLTDFIKFLGRYGVTQALYLDMGEGWNYSWYRDNQGIVQYIH PKTQDYGTNWITFYQ >gi|281304846|gb|ADEF01000049.1| GENE 4 2445 - 5294 2394 949 aa, chain + ## HITS:1 COG:SP0254 KEGG:ns NR:ns ## COG: SP0254 COG0495 # Protein_GI_number: 15900189 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Streptococcus pneumoniae TIGR4 # 3 949 4 833 833 716 42.0 0 MEYNFRDIEKRWQQEWVKNKTYHVVEDKQKQKFYVLNMFPYPSGAGLHVGHPLGYIASDI YARYKRQQGFNVLNPMGYDAYGLPAEQYAIQTGQHPAITTEQNIQHYREQLDKIGFSFDW DREIRTCDPKYYHWTQWAFIKMFQSYYDNDLQKAQPITKLIQHFETKGSDGLNVAQSEEL SFTAHEWETMNEQEQQTILMNYRIAYLGETMVNWCAGLGTVLANDEVVDGVSERGGYPVV QKKMRQWCLRVSAYAQRLLDGLDNVQWTESLKETQRNWIGRSEGAEVRFKVADSDIELTI FTTRADTMFGVTFMVLAPESDYVSQVTTSSQAQKVQAYVDATKKRTERERISDRRVSGVF TGSYAVNPLTGDNIPIYVSDYVLAGYGTGAIMAVPAHDSRDYAFAKHFDLPIIPLIEGAD VSEESYDAKEGTVINSPIKGKQTTFSLNGMQVKEAIAATKEYITKQGLGHVKVNYRLRDA IFSRQRYWGEPFPVYYKGGMPYMIPENCLPLELPEIDKYEPTKTGEPPLGRATKWAWDIE KNVVVDKSQVNNTTVFPLELNTMPGFAGSSAYYLRYMDPHNEEALVAKDVAAYWQNVDLY VGGTEHATGHLIYSRFWNKFLHDYGYSCKEEPFEKLVNQGMIQGRSNFVYRINNDDHSAA PVFVSLGLKNQYQTTPIHVDVNIVHGDVLDIEAFKAWRPEYRNAEFILENDKYICGWAIE KMSKSMYNVVNPDMIVEQYGADTLRLYEMFLGPVEASKPWDTNGIDGCHRFLKKLWGLVY ENRTDKFLPNDDTPTPEQLKSVHKLIKKVTGDIEHFSYNTAISAFMICVNELAQSKCTNK ELLKDVIKLLAPFAPHISEELWHALGETTSVCDAQWPECNEEYLKENDIQMTVSFNGKAR FQKVFSIDDSKEEIEKKVLADERTQKYIADKTIIKTIIVPKKIINIVLK >gi|281304846|gb|ADEF01000049.1| GENE 5 5291 - 6268 948 325 aa, chain + ## HITS:1 COG:TM0177 KEGG:ns NR:ns ## COG: TM0177 COG1284 # Protein_GI_number: 15642951 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 8 302 1 281 283 139 30.0 6e-33 MIKNKEYVMNEVKDYVFITLGLLLYSTAFTIFLMPYEIVTGGVTGMSAIVYYATGFKLEN TYMIINFTLLIVALKILGFRFMMKTIYAIIALYFMLMFAQSLMPLDANGNFIKVLGEGQD FMSMVIGCCITGSSLAVVFLNNGSTGGSDIIAACVNKYKDMSLGQVLILVDIFIVSSCFF FPQFGEMAERAHKVVFGYCTIIIECFMLDFVFARQRQSVQFMIYSRKHEEIAEILSQETD HGLTILDGHGWYTGQEIKVICLLARKNESQLIFRLIKMTDPNAFVSQSSVIGVYGEGFDQ IKVKVKKKHEDRIRNKQSQQTTGNS >gi|281304846|gb|ADEF01000049.1| GENE 6 6216 - 6854 354 212 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|71274727|ref|ZP_00651015.1| Ham1-like protein [Xylella fastidiosa Dixon] # 2 206 4 197 200 140 43 8e-33 MKIVFATNNPNKLQEIRDILGERFEIVSLQEIGCHEDIPETGETLQENALLKAKYVAEHY GLDCFADDTGLEVEALHGAPGVHSARYAEGTDHNSEANMQKLLHELQDKENRKARFRTVI ALLQHPKNQLKENVENAFAAPEIHYFEGRIDGIIAKEKRGNAGFGYDPIFIPNGYQQSFA ELGETIKNHISHRAQAVEKLAEYLHSKINETL >gi|281304846|gb|ADEF01000049.1| GENE 7 6867 - 8882 1544 671 aa, chain + ## HITS:1 COG:no KEGG:PRU_2529 NR:ns ## KEGG: PRU_2529 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 5 670 4 633 634 567 45.0 1e-160 MKTTFVSVLLVLICCLQGMAQIGTWKVYPSYDHITDVQQAGSTIYTLASGGLFAYHKSDN SVQTFDRTTGLNDTEITHIGYNRAAKRLVIVYKNYNIDLLDDNGNVTNLSDYYTKSLTVD KTIHSIFMNGIYAYLATGFGIMKMNVKDAEISDTYFLGFQVDWIHQQQGQLIAESSTKGK YAAKLSSNLLDKKNWKRIGNYTKNTNSKDEALMKKMEEYRPHGPQYNNFYFLKFAHHQLY TTGGGYEPGGISLSHPGIIQILEDNQWHIYQDDIEKITGYSYADINCLAIDPKDKNHVFA GGRTGLYEFQNGKLKSFYNKDNSLLMPAVDKGKELDNTYVPINGLVFDENQHLWILNNQT KGQSILELLPDGTMKSHHQKSLMKNGLSPSLLHHPYIDSRNLLWFSNGDYRFPGLFCYNS KNKVFHTITNFINQDGTSMTPTAVKYVTEDLQHNLWIGTNMGPLLLEESQLSQLPNVTFT QPKINRKDGSNLADYLLSGVDITCIAVDQSNRKWFATGNNGVYLMSADGNEQIHHFTTTN SVLPSNHIQSIAINDKTGEVYFGSDKGLCSYYSDATEAVETMNKETTYAYPNPVEPGYTG PITIVGLSYQADIKIVTANGTLVAQGKSNGGTFVWNGTNMNGKPVASGIYMVQTADQQGN KGTVCKIAIVR >gi|281304846|gb|ADEF01000049.1| GENE 8 8858 - 10138 499 426 aa, chain + ## HITS:1 COG:no KEGG:Nmul_A0278 NR:ns ## KEGG: Nmul_A0278 # Name: not_defined # Def: glycosyl transferase family protein # Organism: N.multiformis # Pathway: not_defined # 61 410 89 427 452 70 22.0 2e-10 MQNCYRQISIIFFIFLLLVLIVFGYTPTNDGEGYLEYAHTCLTYGEPYPCTPTIQGEPFV WNIGQINLVILSLYLFNSIVPILILMCLLKACSAYLLARITQKLLNERIALIAILLYVCY PNNWGQSTTILSEIPSVTLLLWGIFLILHSSHYKQLFIAGFIMALSNWFRPLGVIFIGTF ILYFLIFERQKWWRKTGSLLAGYLLFITVVGTSCWLRTGYFLYQSDTLWFNMVAATYETS VEPHYNAEMYPKGTLRYIEDREHKTAIECKDIWKQRSINWLKQHPFTYLKKVPGRLFYMY MNDMDNISAFLSDKSSAENNYITLPYRSLLKNLKHLTPIQWMGLYNMIFYWLLLLSTIFS FYFLRKEKNYKVLFLTLSILVGGSLALVLAVHGETRFKAPFMPFIIMTAAISIAQCYGKK PYQKKG >gi|281304846|gb|ADEF01000049.1| GENE 9 10869 - 11033 307 54 aa, chain - ## HITS:1 COG:alr1174 KEGG:ns NR:ns ## COG: alr1174 COG1592 # Protein_GI_number: 17228669 # Func_class: C Energy production and conversion # Function: Rubrerythrin # Organism: Nostoc sp. PCC 7120 # 2 54 181 233 237 81 56.0 5e-16 MKKYVCETCGYVYDPAQGDPDSGIEPGTAFEDLPEDWVCPLCGVGKEDFSVVEE >gi|281304846|gb|ADEF01000049.1| GENE 10 11058 - 12122 482 354 aa, chain - ## HITS:1 COG:FN0546 KEGG:ns NR:ns ## COG: FN0546 COG0859 # Protein_GI_number: 19703881 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: ADP-heptose:LPS heptosyltransferase # Organism: Fusobacterium nucleatum # 4 344 5 332 335 79 24.0 9e-15 MKTEHLLIIRFSAMGDVAMTVPVIYSLAQQYPQLRISVLSRPYAQAFFDNLAPNVDFMAA DLKHEYRKIRGLNKLYRRLTAKQFTAVADFHDTLRSKYLRMRFFMDRFKVAHIDKHRSEK RKLIDHQNKVLKPIQSAFQNYADVLSELGYPIKLNFNSIFPTNNEAFSSLIPKIGNYKEN EKWIGLAPFAAHTGKIYPLTHMEQTLQGLLKKYPTARIFLFGGSNQEKKVFLQWTKKYPS CTVVPTTLHSLQEELILMSRLDVMISMDSANMHLASLVNTPVVSIWGATHPYAGFMGWNQ SIDNAVQTDLPCRPCSIYGEKPCRRKDYACLYQIKPEQIIQQVDKILSRKDKLH >gi|281304846|gb|ADEF01000049.1| GENE 11 12123 - 12725 624 200 aa, chain - ## HITS:1 COG:no KEGG:PRU_2563 NR:ns ## KEGG: PRU_2563 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 200 1 200 201 284 74.0 2e-75 MSFSEQCNKIFNQAIDDYHIKDNIDTPIQNPYDRESIENRLYLKCWIDTVQWHFEDIIRD PHIDPVEALALKRRIDQSNQDRTDLVEQIDSYFRQQYSDVQVLPDARINTESPAWAIDRL SILALKIYHMKEQAERKDASSEHQLKCTSKLNVLLEQQKDLGTAIDQLLEDIEAGRKYMK VYKQMKMYNDPSTNPVLYKK >gi|281304846|gb|ADEF01000049.1| GENE 12 13093 - 13329 354 78 aa, chain + ## HITS:1 COG:DR1942 KEGG:ns NR:ns ## COG: DR1942 COG0236 # Protein_GI_number: 15806940 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Deinococcus radiodurans # 8 76 41 109 110 83 63.0 9e-17 MSEIESKVKAIIVDKLGVDEAEVKPEASFTNDLGADSLDTVELIMEFEKEFGISIPDDKA ENIATVGDAISYIEENAK >gi|281304846|gb|ADEF01000049.1| GENE 13 13415 - 14677 1523 420 aa, chain + ## HITS:1 COG:sll1069 KEGG:ns NR:ns ## COG: sll1069 COG0304 # Protein_GI_number: 16329903 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Synechocystis # 1 418 4 415 416 431 52.0 1e-120 MELKRVVVTGLGAVTPIGNTPEETWKNMLAGKSGAAPITLFDTSNFKTKFACEVKDLNIN EYIDRKAARKLDRFTQLAMIAAMQGVKDAEIDLDTVDKNRIGVIFGVGIGGIKTFEDEVV YYGQHKEDGPKFNPFFIPKMISDIAAGQISIHFGFHGPNYATTSACASSSSALADAFNQI RLGKANIIVSGGAEAAICESGVGGFNAMHALSTRNDDPVHASRPFSASRDGFVMGEGAGC LILEELEHAKARGAKIYAEMVGEGASADAYHITASHPEGLGAKLVMTEALKDAGLQPEEV DYINVHGTSTPVGDISEAKAIKDVFGEHAYELSISSTKSMTGHLLGAAGAVEAMASVLAI KNDIIPPTINHEDNDEDPEIDYRLDFTFNQPRKREVRVAMSNTFGFGGHNACVVFKKYAE >gi|281304846|gb|ADEF01000049.1| GENE 14 14790 - 15710 835 306 aa, chain + ## HITS:1 COG:SA1076 KEGG:ns NR:ns ## COG: SA1076 COG0571 # Protein_GI_number: 15926816 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Staphylococcus aureus N315 # 2 201 40 241 243 87 31.0 3e-17 MHKSVMRRNAKGRPVNNERLEFLGDAVLDAIVGHIVYEHFPGKREGFLTNTRSKLVQRST LNKLANEMGICKLLLSSGRSSSHNSYVGGNAFEALVGAIYLDRGYDACMRFMKNRILSEM LNIDKVAYKEVNFKSKLIEWSQKNRVKIHFNLLEQKKDENGNPIFKYLVELEGIEGCSGE GFSKKESQQLASKLTLEQLKRQPKFIDEVFAAKTNRTKMEEEPVAIVPDVAPKDDFIITK TTEIEKHESPFQEEVFTDDDQLNEEKPTSSLEAEIDELHLDDINAAELSREEIVAKAEQQ AFSQQK >gi|281304846|gb|ADEF01000049.1| GENE 15 15966 - 17522 1079 518 aa, chain + ## HITS:1 COG:BH2080 KEGG:ns NR:ns ## COG: BH2080 COG1404 # Protein_GI_number: 15614643 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Subtilisin-like serine proteases # Organism: Bacillus halodurans # 246 487 447 676 1052 105 36.0 2e-22 MFCRKFLFSGCLLFCLGLSSVAFARSAEPNNWYRSNPDSVQGAAIDAALQYLSKYHHKKQ KPIIVGIIDSGIDTTVVDLQDALWRNPKEVVGDGKDNDKNGYIDDVHGWNFLGTADGSFN MTSAGTEEYRQFKRLYPKYKNINQVSTADSTEYHYYLQMKKKAGIANYLRMYQYSIIKNK ALQTMDALVRRYAAIDTITINGVMHLQVPDTLWEQSAEKIYADLIRAKKTMKWTQFVHQQ NNHLQLMKTRIDGIEHAKDKRLLMGDNLLDETDRFYGNPILTIDGCYHGTFVAGVIAGQG KNGHEIWQGVYPKAKLMIIRAAPDGDEYDKDIASAIRYAVDNGAKVINISLGKYTSPTPQ MVNNALAYAAQKDVLIVHAAGNNHLNVDSVDYFPTGLDAHGKFYPNFIRVGASTKKGAVS SMSNYGKQRVHLFAPGEEITSVIPGNQYATENGTSIAAPIVSGVAALIRSYFPKLKASQV VEILMNSVQPMKNKDASISGGSLNALQAVKLAEKTKRR >gi|281304846|gb|ADEF01000049.1| GENE 16 17523 - 19763 1678 746 aa, chain + ## HITS:1 COG:CC2154 KEGG:ns NR:ns ## COG: CC2154 COG1506 # Protein_GI_number: 16126393 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Caulobacter vibrioides # 175 717 170 715 738 114 25.0 6e-25 MRKIILALLLAPPIFVWAQQTNWQQVALHSEKAVKKHLSSDVLASPTWIDQSIFVNYHRI ENGHLVRYILDAKTGKREKLIADVPAFLKQYQQLTGDTAFGNDQLRYLNVQFVKGNSQLF TFKNKGTVKLFNRKTGKLLLQKTSQGSNTLEREDRQKYSYQTVDSAFTMLGDQYNLYVRN NLTGKIRQLTTDGKAYASYCHRSAKDTLLGSNITGNWYGHRFVCFVQDDSQVADLYIINA LAKPRPRLKTKKMPLPNEKHVRQYKLFWYNADTDEAKLLPIEKFNDQYVELNDRHNGRDI YFTRRSRGVDTLQLCHIDVQTGKVRALITEVSKPHLNINEMNYRLVNHGQQIIWWSDRTG RGNYYLYDKNGKLLHQITRGDQLVASTIVHIDTLSNTMIFAGYGKEKGIDPNYRFFYTVT LNGKHQQLLTPGNGTHTLEFSDNRQYAIDTYSRMDMPPVFQVIDVRHPSHRYEIKRANEQ QLLAAGWIKPKLISVKAPDKKTELTGVMYLPSNFDVTKKYPIISNVYPGPQADQVPRAFV IDDNGNQSLAELGFVVINVQPRGSSPIRDKAFYTYGYGNLRDYAVGDDKHTIETLAQRYP FIDLARVGIYGHSGGAAESVTALLTYPDFYKVAVAASGNHDNNIYIQWWGETYHGLKRVP TNMELAHRLKGKLLLISGDVDDNVPWASTLRMADALIKANKRFDFMVLPGMDHAVYGPYY DNLIRYYFRDHLLKLSPRDVDIVNHQ >gi|281304846|gb|ADEF01000049.1| GENE 17 19783 - 23091 2867 1102 aa, chain + ## HITS:1 COG:no KEGG:BT_1552 NR:ns ## KEGG: BT_1552 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 1102 1 1114 1114 424 30.0 1e-117 MRKKALLFFCFCLISLAIVAQNPQKSDAMVQVVTTITDTDGNPLGGATVKVKGKPVGVIA DMDGKISLWVDRGNTITVSYLGMKSKTIKVTSALTKNIVLENDASLLEQVVVTGYTRTTK RRTTGSVSTITAKDLNKNPTANLDMLLQGKMAGVDVKALSGRPGESAKVRIRGTNTITGN ADPLWVVDGVALQKDLPTISKAQMLSGNFSDIFSNGIAGINPNDIESVTVLKDASAAAIY GSRAAGGVIVVTTKRGVAGKLRINYSANATMVTRPPRAVDLMDSKEKLAWEQELWDEYSK PYFEKNERYPVVGIVGMIRSGYGQYKGMNKEQQDAEIARLGSHTTNWFDELFRNSVSQSH NLSLSGGSEKSTFYVSLGYSENAGLVKKTDYSRYNINSKLDIKPNKRVKLGLSLDLGWQT SNSPSLAVDLFKYAYFANPYERVYDDQGNYAADQTYYNIMLANGSKSTLPLPDNGVNIMR EINNTSSKTKNFSTTVIGNITINIIDNLNFEGLGSYSYTTNNGDNINDKDTYTAWQDRPF DLKTLTSKRTYSSIAQSSSYNSSYNLRGQLHYFNTFNDKHYISGLLGSEIRGQYAKSIFA KRYGYDPVSGNSAMPVYPEGKTFEYNDLKNYALLMDNLSGQNIVEDRFASFYFSADYVYN NRYVFSFTGRTDGSNNFGSKEQFNPTGSLGLSWNVDQESFMEKLKPIISSLSLRTAYGFT GNINKSVHPQVIMDYRQSFRKTDTDYYRMGWIKKAPNPNLRWEKTKDMKVSIDAGFLNDR IRMTGEIYKRVTSDAVSEVFIPYSTGFRNQSFNTSKLSNTGAEFTLSAQVIKQDDWNLLI SGNIAYNRNRLLEYKSIVSGLGEGIYVGYPIGSIFSGKVAGIDSRLGLITYEPRPDAVFE TSADRNNAENYLFYLGTSNAPTNGGYSMSLSYKRLTLSLSGTYSLGGKILNQINSPVGYG SLSGTTVEKIPSQMNDLYVNHLNVTRDVVNRWTTKNHRTDAHPRILDAYGKFYGLDNYVV SSPKITKASLLEDVSYFKIGSLNLAYSFDTKLIQRIGLSSLSVSFTADNIYTFTNYSGID PESPGAVYPMARSFSMGVFVGF >gi|281304846|gb|ADEF01000049.1| GENE 18 23139 - 24506 1165 455 aa, chain + ## HITS:1 COG:no KEGG:Cpin_3049 NR:ns ## KEGG: Cpin_3049 # Name: not_defined # Def: RagB/SusD domain protein # Organism: C.pinensis # Pathway: not_defined # 1 447 15 465 475 106 25.0 2e-21 MSLVSCDKYLDIKPYGKTVPKTPEEFSALLHSHLNDMDEGGSTGFMDNVGTIVNLDAGCG DDFEACLTANSGQGLPFYVGNLVGGTYAAGKYEQLYQVIRDCNIVIDNLDDDGTKAANTI LATAYGLRAVCYYQLLRYFCEAPEKGNMDNQLGLVLVQTFNLEDRPLRSSMQATVDFIET DLKKSINYHSTDALYRFTEPVCKGYLARLYFWTEQWSKVLPLTAELLKAYPILQINNYKE VMGTPFKVGSNQLIKAYSTSSGNNQDFLATTTEIKYRPVSIRFLNSFSVSDTAKDVRYKF YVTPERVAVKTFFCGLRSEELKLMQAESYYHLGKTNEALAELNDLRLARVKDAQAWTMAT LPPANSYEVIQEDAEGKPLNPLISAILQERRKELFLEGDRFFELKRNGTPEFWTAYQSLK YTTRKFMYTFPIPIAEIEKISGLKQNPGYDKIITY >gi|281304846|gb|ADEF01000049.1| GENE 19 24524 - 24745 273 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881274|ref|ZP_06289960.1| ## NR: gi|282881274|ref|ZP_06289960.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 73 3 75 75 122 100.0 7e-27 MKQYLKIFLPAVIMLMTAMGSVSCQQEDEVPPRETSTYLKKVYKMPEPEDLSSADKQEVD AIKDEYNKSTNNH >gi|281304846|gb|ADEF01000049.1| GENE 20 24759 - 26030 1116 423 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881275|ref|ZP_06289961.1| ## NR: gi|282881275|ref|ZP_06289961.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 423 4 426 426 854 100.0 0 MKKTFIRFCLLILALVVVSCSKDESINYHTELSLEEPHYILGNVVGDTVIVAIVTEGKAA STVRIPYRLSSSSNAVLHQDYELSDSAFTLNKGDSVAYLKVTRKAVSKPKSFLLTLLPVE GVKIGALNYIEVELLGQNIYSFEDKEGELGLTRDCVIHLKTARGSKFTFSKKTRLDVVVD PASTAQEGVHFKFMNDTKQAVFRAGQNTGTVTLEFLKYEKGKDHIILRLAENTGLLPGTN PTTDIRIVGPDNLSGKWSFQGITNKDWFVNSFGYDPAVLIDTVQTDRLELEGTPAEGYRL TPHFDGKLKNYFIAPTKAKFVGERQSFFFEGAVRRPPKISLTEYELEKVNVAFDKAHTNV RKALIGFRLLKTPQKEKILEVSIYDIEPTEPSWHELVEMMKYSYSEPPYMLDAPIRLHFK QIK >gi|281304846|gb|ADEF01000049.1| GENE 21 26446 - 28074 1415 542 aa, chain + ## HITS:1 COG:XF0847 KEGG:ns NR:ns ## COG: XF0847 COG3525 # Protein_GI_number: 15837449 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Xylella fastidiosa 9a5c # 29 512 90 574 841 363 38.0 1e-100 MKRILCIMLLTTLFLQSYAGIANYEVVPLPQSIKLVKGQGFNLTDGTLIVYAGADEAMQR NAQFLAQYFKSMTNKEVSVTNDRRAKNGCIVLALDKKLKGDEAYHISVSNKTIRVTGKTP KGVFYGIQTLRKSLAEEIHQDAIVFPAVEIDDEPRFGYRGMMLDCARHFFPVSFVKKFID LLALHNMNTFHWHLTDDQGWRIEIKKYPELTKIGSVRQRTVIGRDSDLDDGTPYGGYYTQ EEAREIVEYARQRHIKVIPEIDMPGHMMAALATFPELGCTGGPYEVGFGWGIYLDVLCLG NEKIYPFLEDIIDELVPIFPAKEFHIGGDETPRDYWKVCPKCQALAKREGIDTHQLQAYF TKRMEKYLNSKGKIIIGWDEILEGDINPSATIMSWRGVSNGNKASADGHDVIMSPTEFAY FDYYQTDQTRNEPMAWGGCLPVEKVYSFDPAPDSLSAKAKQHIIGAQANLWTEYIPYTQQ AEYMLLPRMAAMAEVQWMPVSQKNYQAFVKRLYRLAKVYDHEGYIYALHLWPERYHFNRN RW >gi|281304846|gb|ADEF01000049.1| GENE 22 28224 - 30041 1498 605 aa, chain - ## HITS:1 COG:CPn0373 KEGG:ns NR:ns ## COG: CPn0373 COG0821 # Protein_GI_number: 15618288 # Func_class: I Lipid transport and metabolism # Function: Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis # Organism: Chlamydophila pneumoniae CWL029 # 6 598 9 599 613 384 39.0 1e-106 MIDLFNYHRRESSVVHVGNITIGGDSPIRIQSMTTTDTNDTEACVEQAERIIQAGGELVR LTTQGRREAENLKNIHAALRAKGHHTPLVADVHFNANVADVAAEYTEKVRINPGNYVDPA RKFIQIAYTDEEYAQELKKIEDRFVPFLNICKANHTAIRIGVNHGSLSDRIRNRYGDTPE GIVESCMEFLRICKKEQFEDVVISIKSSNTIVMVQSVRLLVDAMDKEDMHYPLHLGVTEA GEGEDGRIKSAVGIGALLADGIGDTIRVSLSEEPECEIPVAKHIVNYITKRAGHLLIPAE QNKNFSYLHPTRRKTRAVGNIGGNNKPIVIASNEGVKADYIYTGPKVPANRQNHKYIVDY SKYHSEKHTYPIFPAMAMPFIGSMRSDIKFLVLQYGTPVEEYVACLKAHPEVVVVCVSNH QNRLGEQRALLHEIMNNGVDNPVVIAQMYRHDEKNAFQLDAAVDMGALMVDGFVDGIWLM NDGQLPHSVLEETAFNILQAGRLRMSKTEYISCPGCGRTLYDLQDTIAQIKDATKEMKGL KIGIMGCIVNGPGEMADADYGYVGAGPGKVSLYRKQTCVKKNIPTEEAVEQLLKLIHDDQ KKENS >gi|281304846|gb|ADEF01000049.1| GENE 23 30056 - 30565 706 169 aa, chain - ## HITS:1 COG:PAB1077 KEGG:ns NR:ns ## COG: PAB1077 COG0041 # Protein_GI_number: 14521838 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Pyrococcus abyssi # 3 161 7 166 174 155 53.0 2e-38 MKPLVSIIMGSTSDLPVMEKACKFLNDLKIPFEVNALSAHRTPAAVETFAKEAADRGIKV IIAAAGMAAALPGVIAANTTLPVIGVPIKGMLDGLDAMLSIIQMPPGIPVATVGVNGAMN AAILAVEMLALSDEAIAQKMKEHKAGLGAKIQKANADLSAIKDYEFKTN >gi|281304846|gb|ADEF01000049.1| GENE 24 30590 - 31210 237 206 aa, chain - ## HITS:1 COG:no KEGG:PRU_2856 NR:ns ## KEGG: PRU_2856 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 12 199 1 187 194 208 70.0 1e-52 MKEKNIILTARVMSIVFTPFYLPILGLIALFFMSYLSNLVPWYYKLTVIMMVYLFTVLLP TLLIHLYRKYQGWTLIELGVKERRMVPYIISIVCYFVCYYIMNLYHIPHFISSILVTALA IQIICALINVWWKISTHSAAIGGVIGALLAFALMFQFNPIWWLCLSLLVAGLVGTSRMIL RQHSLSQVIIGFMVGLVAAFYIILAI >gi|281304846|gb|ADEF01000049.1| GENE 25 31291 - 32784 1457 497 aa, chain - ## HITS:1 COG:RSc0408 KEGG:ns NR:ns ## COG: RSc0408 COG1508 # Protein_GI_number: 17545127 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog # Organism: Ralstonia solanacearum # 19 496 15 497 499 200 29.0 5e-51 MAQKLIQTQKQTQQQVQRLSQQQMLQVKLLEMPLTELEESVNAELDDNPALEKSEYEDAP AHDHEHEEEQEENFEQKTEREEREDALDKALENIGRDDEMPETYTGYHTNNNAEYEEIVY GDATSFYDKLKEQMGMEHLTDEQQYVMEYLIGSLDDDGYLRKEIDTISDELAIYHNIDVS TKQIENVLSILQSFDPAGIGARSLQECLLLQIKRHPDDKLKEILWQVIANHFEAFTKKHW DKIQSNMGLTDLQIEAVQDEILKLNPKPGASLGETLGRNVQQITPDFIVEVNDDDSISFT LNQGNIPELTISPMFSDMVDTYRTNKGNMNRQEKEALLYAKQKVDKAQGYIEAIKQRRHT LYITMRAIINWQRAFFLDGDETDLKPMILKDIADQTGLDISTISRVSNLKYAQTKWGTFP LKFFFTDGYITEEGEELSTRKIKLALKEVIEHEDKRKPMSDESLAKEMKKRGYPVARRTI AKYREQLGISVARLRKE >gi|281304846|gb|ADEF01000049.1| GENE 26 32967 - 33605 551 212 aa, chain - ## HITS:1 COG:no KEGG:PRU_2854 NR:ns ## KEGG: PRU_2854 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 16 212 1 197 199 226 55.0 4e-58 MHYLWSDDYWLLLMQLYLKKPIGIKPLYSRAMVDLSLALHIPPQTLYEQMFKLRRLDTPR LEKLWKDYATHPNKLARDVKRLRKMHGFGQAETFYDGVEINESFEQDFQPLKEDEELMPI MLIIILDLYFRLIPMTMVSDTPEIIKLAKQIRLKPQKVVEIMEVFQFCDPYLNSENLLIH PLLAPCQEIWQRYGNTNPEQLAALASQLKDYF >gi|281304846|gb|ADEF01000049.1| GENE 27 33816 - 35138 1107 440 aa, chain + ## HITS:1 COG:no KEGG:PRU_2853 NR:ns ## KEGG: PRU_2853 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 8 436 1 428 434 440 48.0 1e-122 MDSKTKTMKKYFILLLLAVSYTVVYAQRSKTEILQNPLLAANGYYAYPGPLQAKLTPAPK GYVPFYISHYGRHGSRYLIEPTDYSSPLHTLQHADSLGKLTPTGKEVLRKVTMICNEAKG RLGELTLRGAEQHQQIARRMYERFPEVFRGKTHVDAKSSTVVRCILSMENALHQLIRINP QLQVTHDASEHDMPYLVYGDTALYKNKMPGKVKDIYDAFARKHDNHVGVMNRIFNDELYW RDSVNATDFNYQLYNLACNVQSTELRHQISLLPLFTHDELYDAWLKTNAWWYINYGPSPL NGAVQPYSQRLLLRRIITEADSCVALSHPGATLRYGHDTMVMPLVCLLGIDGYDKEVEDL ERLDDENWLDYRIFPMACNLQFVFYRSQKRPYDILVKVLLNENEATLPLPSAIAPYYHWE DFKAYYLAKIDNFQVRGCQK Prediction of potential genes in microbial genomes Time: Sat May 28 07:35:48 2011 Seq name: gi|281304843|gb|ADEF01000050.1| Prevotella timonensis CRIS 5C-B1 contig00087, whole genome shotgun sequence Length of sequence - 2240 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + LSU_RRNA 1080 - 1415 91.0 # AP010656 [R:196681..199575] # 23S ribosomal RNA # Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Candidatus Azobacteroides. + LSU_RRNA 1543 - 2090 91.0 # CP000139 [D:2589683..2592483] # 23S ribosomal RNA # Bacteroides vulgatus ATCC 8482 # Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides. Prediction of potential genes in microbial genomes Time: Sat May 28 07:35:52 2011 Seq name: gi|281304831|gb|ADEF01000051.1| Prevotella timonensis CRIS 5C-B1 contig00073, whole genome shotgun sequence Length of sequence - 16472 bp Number of predicted genes - 13, with homology - 12 Number of transcription units - 6, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 128 - 175 -0.8 1 1 Tu 1 . - CDS 291 - 536 94 ## BVU_1598 transposase - Prom 691 - 750 8.0 + Prom 632 - 691 7.5 2 2 Op 1 . + CDS 736 - 2004 613 ## DSY2015 hypothetical protein 3 2 Op 2 . + CDS 2062 - 2193 60 ## 4 2 Op 3 . + CDS 2237 - 3631 582 ## gi|282881288|ref|ZP_06289972.1| hypothetical protein HMPREF9019_1864 5 2 Op 4 . + CDS 3677 - 5050 660 ## gi|282881289|ref|ZP_06289973.1| hypothetical protein HMPREF9019_1865 + Prom 5680 - 5739 8.5 6 3 Tu 1 . + CDS 5760 - 6797 583 ## gi|282881290|ref|ZP_06289974.1| hypothetical protein HMPREF9019_1866 + Prom 6876 - 6935 3.2 7 4 Op 1 . + CDS 7174 - 7932 867 ## COG2877 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase 8 4 Op 2 . + CDS 7968 - 8942 806 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 9 4 Op 3 . + CDS 8962 - 10221 587 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Term 10238 - 10280 2.6 10 5 Op 1 . - CDS 10286 - 10897 411 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Prom 10932 - 10991 2.3 - Term 10947 - 10997 2.0 11 5 Op 2 . - CDS 11016 - 11348 388 ## COG0662 Mannose-6-phosphate isomerase - Prom 11376 - 11435 12.1 - Term 11438 - 11479 8.1 12 6 Op 1 . - CDS 11510 - 13027 1189 ## PRU_2873 putative lipoprotein 13 6 Op 2 . - CDS 13053 - 16322 2629 ## BDI_2310 OmpA-related protein - Prom 16366 - 16425 6.0 Predicted protein(s) >gi|281304831|gb|ADEF01000051.1| GENE 1 291 - 536 94 81 aa, chain - ## HITS:1 COG:no KEGG:BVU_1598 NR:ns ## KEGG: BVU_1598 # Name: not_defined # Def: transposase # Organism: B.vulgatus # Pathway: not_defined # 21 63 1 43 429 67 69.0 1e-10 MSEFSLILVLQKKQENPTIDMAKIQIKSERLTPFEGLFSIMEQFDSTLSSVIDSTLGLRC RSFCCLSLYQPSGSGHQGGMC >gi|281304831|gb|ADEF01000051.1| GENE 2 736 - 2004 613 422 aa, chain + ## HITS:1 COG:no KEGG:DSY2015 NR:ns ## KEGG: DSY2015 # Name: not_defined # Def: hypothetical protein # Organism: D.hafniense # Pathway: not_defined # 74 383 99 375 404 95 29.0 4e-18 MRRNIVLNCMLIFFCCFFSCSSDENSTKNLFPTTEVSNMSSNTEDIVTDLSTRLYASYSS RQTRALNKSSDGIVTPNYFGGSYFNGSKLVVLIKNNDKQGIKDVQKRIGISSFILYKKCS FSLNELNKLNDDLGEIYFNKKSLRDKLGWTAVGINQMENHVIVYLKELCQEKISLFKQEV SSSPMIIFEQMDEIEALNTVQPDSIAFYTRAANALTNIHMGSGYTCTKTLQASGSVGFRA KLNGKKGFVTAAHVLPATNLSVVFNSKTCGTVKKVVKGSSVDAAFVEINERLFYPTNVTQ WTKNVLSSSFVSHSSLTGKTVTAEGNTTRKAVTGKITTTELQYTISCNSVVGTLNYNIKR GVSATYTNQKTILKSGDSGCIVYDNSKKICGILSATSYKKTPSYMIFSSADLSVKDLGVA IY >gi|281304831|gb|ADEF01000051.1| GENE 3 2062 - 2193 60 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEGNKFVNLELAEKPTGVNLNKILTWQNPEQLFVAQVLKKFNL >gi|281304831|gb|ADEF01000051.1| GENE 4 2237 - 3631 582 464 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881288|ref|ZP_06289972.1| ## NR: gi|282881288|ref|ZP_06289972.1| hypothetical protein HMPREF9019_1864 [Prevotella timonensis CRIS 5C-B1] # 1 464 1 464 464 934 100.0 0 MKYLRLFVVYLVIAFPTSAFSHSQRILEEKQFLEYLYKGRYWEMTQFYSKSNIDCPTLKL LNSVYTAIGDNRNDLAIQLLYENMKTHWKEYDRNTQIFSGLMVNLCLTEGRYDDALAQYN WLKDVYSPLQQQYYKNQNITADVNKMIDEEAKVMKIARKRPQMRIVCKGEPKPIKFTLEP HIKTKLKVNEATETFLWDTGSPVAISLPHRYADELGLDYRSDSIVSGNEKIAIAYIDSLM IGNYTLYHVPTCIVDMKSPIPALYKQHASKKKLLEAMNVYNEMNCPIIGLPIIKLFEKFG IDWKYECFFFPKEQLPTPHFEERIFMTNYSRSYLLTPITINSMSMMGSVDTGYSFYMGLN RQYQKDNSKLFPIGYDKSNDIYSVTMVGLQDTLGVFLLNPSLTYGYTAMKPTYLIKLRDS VMTNEPWDVLLGYPFFKSLGEAMVIDFKEMKVKIWEKSDNPRLY >gi|281304831|gb|ADEF01000051.1| GENE 5 3677 - 5050 660 457 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881289|ref|ZP_06289973.1| ## NR: gi|282881289|ref|ZP_06289973.1| hypothetical protein HMPREF9019_1865 [Prevotella timonensis CRIS 5C-B1] # 1 457 1 457 457 897 100.0 0 MKIYKSMRNFRLLILVMSTVCALSTYSQDYKSKFGLYGNLLSSGRYLEMSKVYTDKDSIN PFLKLNNKIVAAIANNQNRYAISLINDNLRYNWQAYGFDALYLADVYFTLCKAEGLYDQE EALLEWLKQDYYPSQMIYYNDKKYTAATEKLISDEENSLKAKVLISPVHAIRKDESQAVK FSVNPIIRTKIKLNGETLDAIWTTELRYPLQITPQVADQLGIVCGKDSVAGCPVVYLDSI NIGNLQFNHVPALVSVMVDPTAYIKEHKLSRKYAKELKAFYTRINVPQIGLPIIRLLEKI AIDWKHQIINFPTDTLPKADFEESMYFAYPDFPALYLPVSINNEFAVGQINLGNSDYIVV RDNFYKKYNFPSIKGKNITVLKNNRLFSVPLITLKSPSVLFGGHTVDSKKKLSVRSVNDR SSDVEIGLSFFKSLGQTVVFDFKQMKVQVWKKDIPSK >gi|281304831|gb|ADEF01000051.1| GENE 6 5760 - 6797 583 345 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881290|ref|ZP_06289974.1| ## NR: gi|282881290|ref|ZP_06289974.1| hypothetical protein HMPREF9019_1866 [Prevotella timonensis CRIS 5C-B1] # 1 345 1 345 345 654 100.0 0 MKIKEVKNIIKGGFLIQTAKDNSLMYQISNNTFINNKSYHYVACFEQHTLNDTLYVNNLK HTVYKFDSQTKELLPYITHGKGWVEGVTPNGYILANYNKEKKLREYTCIRNDNNIWELES PFESFSLFKQYALAWKGKREYANTCQLIDLETGKVMWEKEYTEAHIDLVIPFEDKIVIEW CTELSSDKKDKIICVEIPSGKVLWENFTSGNYKKYGKNRLVSFWSHYSTVGPSKNHNQYA EIDTETGEVYIHKFENYNKEVFTTMVYKDYLFYAYHSDNSEYSDKMGVGIINLRTHEMIQ EYDIDFTRGDCNYIKSMGVYKGDLYVEVETEVNHSDIHVFELEEE >gi|281304831|gb|ADEF01000051.1| GENE 7 7174 - 7932 867 252 aa, chain + ## HITS:1 COG:jhp0003 KEGG:ns NR:ns ## COG: jhp0003 COG2877 # Protein_GI_number: 15611074 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase # Organism: Helicobacter pylori J99 # 3 251 11 271 276 271 52.0 1e-72 MHPIFIAGPCVIESWELLETVASRLVEINQHLGTEIIFKASFDKANRTSIHSFRGPGLEK GLQMLEQVKKKYHLRITTDIHESYQAEAAGQVCDILQIPAFLCRQTDLLVAAAKTGKVVN IKKAQFLSGKDMKYPVEKARESGANEVWLTERGNCFGYNNLIVDFRNIPDMLELVDTVIM DCTHSVQRPSAGNGKTIGDRHFVPSMAKAAKAFGATGYFFETHPTPDQGLSDAANMIALD QLELIIQDLLKA >gi|281304831|gb|ADEF01000051.1| GENE 8 7968 - 8942 806 324 aa, chain + ## HITS:1 COG:Cj1443c_1 KEGG:ns NR:ns ## COG: Cj1443c_1 COG0794 # Protein_GI_number: 15792761 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Campylobacter jejuni # 12 214 3 205 205 232 56.0 6e-61 MDENTNNLLKQTKDFAAQCIKDEAQALLDLIPQLDEHFEKAVELMFNCKGKIIVTGVGKS GHIGAKIAATLSSTGTPAFFINPLDVYHGDLGVMTPDDVVLALSNSGQTDELLRFLPMVL HMKVPVVSISRNAHSLLAKYSTTHILCSVKKEACPLNLAPTSSTTAALAMGDALAIALMK VRKFKPNDFAQFHPGGELGKRLLTTAADVMRSDNLPIIPKEMHLGDAIIHVSKGKLGLGV SLENEQVVGLITDGDIRRAMEKWQAQFFDKTVSDIMTTNPKTVAPSTKITEIQRIMHQYK IHTVLVVDEANHLLGIVDHYSCMI >gi|281304831|gb|ADEF01000051.1| GENE 9 8962 - 10221 587 419 aa, chain + ## HITS:1 COG:lin2646 KEGG:ns NR:ns ## COG: lin2646 COG1502 # Protein_GI_number: 16801708 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Listeria innocua # 24 419 103 482 482 239 34.0 1e-62 MRTVLFILSIAFCVTTRAQSSDSIIAQALCKEGVTFTHDNKVTLLTNGQEKFDDLFKAIE QAKSSVHLEYFNFRNDSIASLLFQLLERKASEGVEVRALFDAFGNASNNRPLKKRHIDYI RAKGIEIYKFDPITFPWVNHALSRDHRKIVVIDGEVGYTGGMNVADYYIKGTKQVGKWND MHCRIEGLAVNTLQSIFLKMWNKTAKQNVHGSKYYRGHRSRDYMEGLNPDTCDSAGHKTV GMINREPRISNKIIRDFYVKAINAARDSLKIINPYFTLNRGIKKALRNAIHRGVKVEIML STSSDIPLTPDCGFYNAHQLMKQGARVWMFTDGFHHTKVMMVDGKFCTVGSANLNARSLR YDYENNAVILDRCTTKQLDNLFDRDKKYSFLLTPKSWDEFRSPWQKFRGWFAHLLAPFL >gi|281304831|gb|ADEF01000051.1| GENE 10 10286 - 10897 411 203 aa, chain - ## HITS:1 COG:SA2179 KEGG:ns NR:ns ## COG: SA2179 COG2197 # Protein_GI_number: 15927969 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 136 193 153 210 217 59 51.0 4e-09 MEKQMIKNGRPQIAIIDSNTLAILGLQQILQDVFPIMEVSTFNSFDELSQNFPDSFFHYF VSVSIVLENRGFFLDRRRKTIVLTTSNDPMTQLTGFHSICVNVPEDELVRSVLMLEQHAH GTGQHLPPLPKVLKKKVLSDREIEVLSLIVQGYINKEIADRLNIGMTTVITHRKNIMEKL GVKSVSALTIYAVTHGYVDINNI >gi|281304831|gb|ADEF01000051.1| GENE 11 11016 - 11348 388 110 aa, chain - ## HITS:1 COG:TM1287 KEGG:ns NR:ns ## COG: TM1287 COG0662 # Protein_GI_number: 15644042 # Func_class: G Carbohydrate transport and metabolism # Function: Mannose-6-phosphate isomerase # Organism: Thermotoga maritima # 1 106 7 118 121 59 33.0 1e-09 MVIDFEQIKEQVIQGFKGGLGELRTKSFADDKCKIMLSTLKPGASSGLHTHEQNCEIIYV LDGTLTFHYDQEIETVHAGQVHYCPMGHQHYMENLTSTDVKYFAIVPEHH >gi|281304831|gb|ADEF01000051.1| GENE 12 11510 - 13027 1189 505 aa, chain - ## HITS:1 COG:no KEGG:PRU_2873 NR:ns ## KEGG: PRU_2873 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 505 1 504 504 470 53.0 1e-131 MKLKYIFLTFVAFIALAFTSCEDNKDITLLDAVQVSSSYVSIPVEGGESSIIVKASTDWT MEKVVTKTDSVKWLSITKGKDNEGNEVLTFKAEKALDGRSAQVLIHCAGETQYVNVIQGL SKKEVVTVANVLGGPAGKTYRVKGIVSSISNTLYGNWILKDKTGEILIYGTKDKKGNKKN FASLGIEVGDEVTVEGPKKIYGSTIELADVDVLNIVKSLIKVDSVFNDTIAVGGGETTVH LTCKGQGVSVEIPESAKSWLAISSIQSRGTNAVVKFMATANTGGDRHSKIIFHTTDGKKD YTSSATIVQLGAIVKASVANFLAAPVGETQYRLTGIVTKIKNAEYGNVYLKDFSGEVYVY GLQGFKGKNVKEGDIITVVGKRGEFKGTPQMVKGALETVKHVTPITIADVLKKPDSKEVH YLVTGTIKEIKNADYGNMTLKDGDSEIYLYGCYPGYGATDDARKGAVGKLGLKVGDKLTV IATKSSYKRTVQLANGVYYQHESAK >gi|281304831|gb|ADEF01000051.1| GENE 13 13053 - 16322 2629 1089 aa, chain - ## HITS:1 COG:no KEGG:BDI_2310 NR:ns ## KEGG: BDI_2310 # Name: not_defined # Def: OmpA-related protein # Organism: P.distasonis # Pathway: not_defined # 4 1089 6 1096 1096 1065 51.0 0 MQKRILFLVSMMMIVCHSIMAQVTTSSMSGRVTLKETGEELIGATIQAVHMPSGTSYGAV TNANGRFNIQGMRTGGPYKVTVSYVGHQTKTYTDIKLQLAEVYNLNVELSEDAKLLGEVV VSATASKFAAEKTGASTNINKSQIANMPTVSRSITDITRLSPYGGKGMSFGGVDGRTANF TVDGANFNNNMGLSPSLPGGGNPISIEAIEELQVVVAPYDVRQTNFIGGGVNAITKSGNN QFQGTAYVYHENENLRGDAVKRQQISGAREKDQKTTYGFTLGGPILKNKLFFFVNAEAIK IPTIVNRWRGSTKGIADPDNFISRTSLKDLQTVSDFVKNKYGYDTGSYTDFPADKNNYKL LARIDWNITDQHRLALRYNYTKNQNWISPNASSMDGGTRMSEGRLSKASMAYANSMYSLD NLVHSFSFDLNSRLSENLSNQLLATYSKLDDVRGTNSSEFPFIDILKDGQAYLSLGYELF TWNNAVHNNVWNVKDELTYYLGNHKLIGGLAYEYKMADNSYMRNGTGYYRYTSLGDFLNG GTPEIVNLTYGYDGEKAPAARVRTNKYSLYAQDEWSMTDNFKLTYGLRIDNLVFDNKDLI ANKAINDLDFNGRHLDTGKWPDANWIFSPRVGFSWDVLGNKTLKVRGGTGLFAGNLPLVF FTNMPTNGGMVQYNAHINAGIAAKRGFDMTQFAGGLVTDGEGRATHAALYEKLASLGYPT TVKPEDGVVPSAVAGIASDFKMPQVWKTSIAVDYQLPISFPATLTGELIFNKSINETSIS DWSIPSVGGFARFNGVDNRPIYPTGYHTNTSAFVLENTSRGYGWIGNITLNTQPTEWLDL TAAYTHTVSKNVTGMPGSNAESAFTYVPTVEGPNHIRLHNSQYVTPDRLMASATIHDKSG NHYGFFYEAWRGGANYSYMTVNDINNDGYNYDALYIPTDEQVANNDFRFVSEDDKTRFMD YVHNNNYLKKHQGEYAEAYSLYSPWVHRIDFSYKHDFKVNIGNTKHKLQLSFDVKNLMNL FNSSWGVAKYLNPAIGAEARILKFEGVDKEGYATYSTPSSIQGNTETFTPSYSLGQCWYA SIGIKYTFN Prediction of potential genes in microbial genomes Time: Sat May 28 07:37:06 2011 Seq name: gi|281304825|gb|ADEF01000052.1| Prevotella timonensis CRIS 5C-B1 contig00057, whole genome shotgun sequence Length of sequence - 8864 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 2 - 42 6.2 1 1 Op 1 . - CDS 50 - 1708 1041 ## COG3436 Transposase and inactivated derivatives 2 1 Op 2 . - CDS 1772 - 2116 228 ## ZPR_3984 transposase orf1, IS66 family protein - Prom 2277 - 2336 6.7 3 2 Op 1 . - CDS 2340 - 3509 649 ## COG0526 Thiol-disulfide isomerase and thioredoxins 4 2 Op 2 . - CDS 3514 - 4911 884 ## Cpin_2946 hypothetical protein 5 2 Op 3 . - CDS 4923 - 8234 1847 ## Cpin_2947 TonB-dependent receptor plug - Prom 8317 - 8376 9.1 Predicted protein(s) >gi|281304825|gb|ADEF01000052.1| GENE 1 50 - 1708 1041 552 aa, chain - ## HITS:1 COG:Z1131 KEGG:ns NR:ns ## COG: Z1131 COG3436 # Protein_GI_number: 15800652 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Escherichia coli O157:H7 EDL933 # 38 548 12 504 512 177 27.0 6e-44 MDKTRCTITSDYHSLTREAVVKLLEQRDAELKNKDAELEQRDAELKVKDAELQSKDAELK VKDAELERKSRRILELERMVFGRRSEKRLPESASDWTGTLFDEQWAKEGSLAQVEALPII KEIKQQAGQRRASRRVSRPSRKGTTYASYVPENIERQVTEIYPKDYDAERMVIIGHDRSE HLCLRPSSFYVRVEDRVICRLKEARPTDAKVDIMEAPLKKQAVDCFADASLLAEIITAKF AYHQPEYRQCARWKEHGINIPTSTVNSWVHDAADALYPLYKLQVRQILQSPYLQVDETSV QVADRKGKTRKGYLWGVRDAMHSQGVFFHWKDGLRSGSVADELFKGYHGSIQSDGYEAYS RFENVQDIVLLGCMAHVRRKFEHLAADDKNAAHIIETIATLYELEENLKHKKAPPEEVEI ERKAKAYPILKYLETYMLDVHKQYTPSEAMEKALRYAFAVWIRIGRYVQDGRFNIDNNLM EQAIRPITLGRKNYLFCGNNEGAENNAIFYTFVACCREADIDPYKWMKKILSKPLLDMTE EELTKMLPSNFK >gi|281304825|gb|ADEF01000052.1| GENE 2 1772 - 2116 228 114 aa, chain - ## HITS:1 COG:no KEGG:ZPR_3984 NR:ns ## KEGG: ZPR_3984 # Name: not_defined # Def: transposase orf1, IS66 family protein # Organism: Z.profunda # Pathway: not_defined # 1 114 1 116 117 78 35.0 6e-14 MFVLNETNVFRVCCTPVDMRQGILRLSQLVRSNDFNPSDGAVYVFYNRSRNRIKLLHWER CGFVVYHKQMTQGCLSPKIIQSRTGFYELRWDELVLYIEGINPSCYRRKRYNKS >gi|281304825|gb|ADEF01000052.1| GENE 3 2340 - 3509 649 389 aa, chain - ## HITS:1 COG:BS_resA KEGG:ns NR:ns ## COG: BS_resA COG0526 # Protein_GI_number: 16079372 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus subtilis # 243 371 30 155 181 75 31.0 2e-13 MLRRSGLLVLLLFFCLIIQSKGVILVGRVSNPAIKQLYVFSVYDEQNVYLLPLDSIRVVN QGFNYHNDTLKSQLLFITPVSEKKDMEAAFLQGCYIFPSNGMNDFVFSFSATKGIKVESS SSPFQTLYELFVKERDRVGQKQLLDSLDQVFYAAREKNDNKEMEEIKRTTAPIYNNAYKQ LRSWLDTQITAQCGIPFGIYLYYTYKLQHSKLDTKAKVDEAERMLQGFGPDLQDSHYYQL AFRKVLKAKSTLVGEKAPNIVGVDETGKRISLNDFRGKYVLVDFWSSSCKWCRKETPNIR KAYDEFKSKGFVVLGVSTDLHKTEWLKAIETDKATWTHLLLPKEQRSRVLESYNIISIPE ILLIDPEGNILAKGLRGERIYETVKMYLK >gi|281304825|gb|ADEF01000052.1| GENE 4 3514 - 4911 884 465 aa, chain - ## HITS:1 COG:no KEGG:Cpin_2946 NR:ns ## KEGG: Cpin_2946 # Name: not_defined # Def: hypothetical protein # Organism: C.pinensis # Pathway: not_defined # 14 458 12 471 476 295 38.0 2e-78 MKNVTTILAICVVVMLTGCNDYLDIKPKGEIIPTTVSDYETLLNYESVQKVSDTYPAYFT DDVFLPNVAEGTATPGLNSVDQSIRNLYLFKKEVFGDAQDDGFWFASYNRIYYYNTVIDN IMNADGSDEQQKLSIRAEALISRALEYLYLVNGYAKHYDVRTAESDPGVPLILDEDISKK NLVRASVKDVYAQILSDLQTALPNLPVQAKGNAFRASKAAGYGVLAKMYLYMGNYAEALK AANEVLEINNSLLDLKKYAVVKPQSSIGRTNVPQDIDNPENIYIKFAPYVYGLSSKVFGS DELISLFSEDDMRLQIYFTKNFRNIPTDKYVWAPYLRANLAVSSPEIYLIAAECEAREGS VERAMSLINKLRDNRIKNNTDIVATDRNDALQKVLEERRRELAMSGMVRYIDLKRLNQGS QFAKTVTHITSEGTSTLEPNSPLYVLPIPAKVMRFNKNSMQQNER >gi|281304825|gb|ADEF01000052.1| GENE 5 4923 - 8234 1847 1103 aa, chain - ## HITS:1 COG:no KEGG:Cpin_2947 NR:ns ## KEGG: Cpin_2947 # Name: not_defined # Def: TonB-dependent receptor plug # Organism: C.pinensis # Pathway: not_defined # 61 1103 113 1161 1161 712 39.0 0 MREEAYKVKRDFLVLLKRCHLRICMLCVLFVPPSQYVQSTYADSLTREFYNGQKVSQKRH VSGIIVDEKGEPLIGVTVAVKNGKNMCLTDAEGHFNIWLNSNESTLVISYIGMKTMEVAA LHDGPLKIVMKVDDNPLNEVIVTGYQTLSRERTTGSFNVVTADKLKDKLQMNIINRLEGM VPGLVFQNGEYYLRGMSTLRGGPTRNEPLLVVDGLPFEGNISSINPSVVKNITFLKDAAA ASIYGARAANGVIVITTIDGKGNGKTSVQYDASIKFTPAPNMSGLHRLNSRELVDLQKDG FKYDPGQYAYLDPRERVNPVLELLYKNRAGMIDNNELEKGLEVYRNLDNRKELEDFYTKT GVRHQHNVSILGGNWANRYAVSLNYDGNSYNARYLSSERYGFSLRDNIGFFRWLNADLSV TGSFSRDKGDTGMGQFTDIYHNYPSYTMFRDKNGTPINFPKYKSDFELERLKELGLMDES FNPITNRKEENFITKDQYYKIQLGLNFKIAKGLNFDIRFQTENTVSKTTEFHSAESYYVR NMINDAAQYNTMRKTLTLNVPKGAQMGEYRSDMSAYTLRAQLNFSKEFGKNSITAIAGGE RRQKKSTGTSVYYMGFDESSLGYKPVNPLTLSSLMRTESLNGYFMWQSIYNNYITDVENR FVSFYSNAAYSFDNRYDITGSIRVDQSNLFGTDPKFQYRPLWSVGGAWHIMREKFWKGKA SWIDNLTLRLTYGIGGNIPKDAGPYLTLEAARYNQWSRDFASAIKNPPNPTLRWEKTATT NIGVDFAFFGNRITGALEFYNKRSNDLLANREADPTLGWRRVTLNYGTMYNRGIEFMLSS NNIRTTDFSWSTTLNFGYNKNKLIDIDDSDINVFGITSGNASVKGYPLGAIFSFRYAGLN GTDGTPQYYVDGGSRVAKEVTSLDDLVYSGTRIPKYNGSLTNIFTYKNFNLSIMFVYYGG HVLRGEAAPFLSVAPTTNVNRDILNRWQQPGDEKRANVTPAFTGYSLDVTTVRHPWYAAD VHVIKGDYVKLRDLSLTYNFDKQLIGKWGFSNLALILQVQNLLTWCANNEGIDPEALGTF GYGWGQRGIPNPTTWSIGLSAKF Prediction of potential genes in microbial genomes Time: Sat May 28 07:37:26 2011 Seq name: gi|281304820|gb|ADEF01000053.1| Prevotella timonensis CRIS 5C-B1 contig00025, whole genome shotgun sequence Length of sequence - 5237 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 92 - 151 4.5 1 1 Op 1 . + CDS 259 - 1245 765 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 2 1 Op 2 . + CDS 1260 - 1871 360 ## gi|282881306|ref|ZP_06289988.1| hypothetical protein HMPREF9019_0870 3 1 Op 3 . + CDS 1874 - 3010 767 ## Maqu_1261 hypothetical protein + Prom 3017 - 3076 6.5 4 1 Op 4 . + CDS 3100 - 5145 719 ## Pnap_4359 UBA/ThiF-type NAD/FAD binding protein Predicted protein(s) >gi|281304820|gb|ADEF01000053.1| GENE 1 259 - 1245 765 328 aa, chain + ## HITS:1 COG:BS_comEC_2 KEGG:ns NR:ns ## COG: BS_comEC_2 COG2333 # Protein_GI_number: 16079611 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Bacillus subtilis # 173 312 131 284 307 63 30.0 4e-10 MKYEVIIIDVKDADAIVINCHDGERWWTAVIDAGNVGDANKMKTYVKHKENNKSIIDYAF CTHPDKDHKGGFFNLLTDPQVEICNFYIRRPDTLMRNDNRRLLYETGTLEAAAKAVYNHP TDDARNLIDEAVLYSHLVEPALGQDVTGMPLMIIGPRVKFFQDACYQMAISFAELEDETD AETYAEDELPTEEDARSVMDEVKEESPTNKSSLILLFHPDSRCVLLTGDACSATLKDAVE DYPQLIPGCVLKVPHHGSKHNLTTEVIDMLKPSSAVISAKGSKKHPNRAVVHFLSKHCNV YSTSKSGTLIYQNMPVVNPAKALRNKQI >gi|281304820|gb|ADEF01000053.1| GENE 2 1260 - 1871 360 203 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881306|ref|ZP_06289988.1| ## NR: gi|282881306|ref|ZP_06289988.1| hypothetical protein HMPREF9019_0870 [Prevotella timonensis CRIS 5C-B1] # 1 203 1 203 203 396 100.0 1e-109 MNFKYYDVFSTLISGIVLLFTLSIAIDWNITNINVVILLSLAYVIGYMLNAVSALLEPLY HWVMGGKPSDKLLKVPKPSCCGKMRNYTGFGRIRFYEYEKAIRLLRQDLDDAKADEKKMF GKAMAYSNSTDKTRVPDFNAHYAFSRVMLTLVIVSVSIIMPKLYDLWWTWLISVAVILLA GQRCKERGYYYAREVLIEYLKTK >gi|281304820|gb|ADEF01000053.1| GENE 3 1874 - 3010 767 378 aa, chain + ## HITS:1 COG:no KEGG:Maqu_1261 NR:ns ## KEGG: Maqu_1261 # Name: not_defined # Def: hypothetical protein # Organism: M.aquaeolei # Pathway: not_defined # 1 377 1 386 389 176 33.0 2e-42 MEHIIKFYSVGNADCTLIKLDNGKTIIVDCQILADLTDGHGKQVMFDIKADLLKELNKDS LRRPFVDLFISTHPHDDHCKGFAGNFYHGDVANYDKDKNKDEIIIEELWITPRGLKNDLS APAEDIRKEAKRRRELYDDDAHFYGTKGNYLRIIGYDKDKEYDGRYCYVPGKLVTSVHGS SLSWLEIFIHAPFKEDVETSKKEDDKNATSIVVQFGFKIAGYTGYKSKVLMGGDAEHEIW QHILDNNTDEEKLKWNIFLAPHHCSWSFFNDSDNKEETKPSAENILNKQIGNSAHIVASS NEIKDDDNNPPCYEAKQEYVKKLKAGSSHFLNTATHNKVGSISQPIVFKINENGKTLREN AMVAGTSSISNPAPRAGV >gi|281304820|gb|ADEF01000053.1| GENE 4 3100 - 5145 719 681 aa, chain + ## HITS:1 COG:no KEGG:Pnap_4359 NR:ns ## KEGG: Pnap_4359 # Name: not_defined # Def: UBA/ThiF-type NAD/FAD binding protein # Organism: P.naphthalenivorans # Pathway: not_defined # 30 674 66 745 751 188 25.0 7e-46 MRHPYAKDIQCYVNGKGNIIIRMCLTHLEIPDEPFYKIYDEEKVAIVCHPEDIDMPEVYA LRKDFPTELSHSNAKPFARPVSLCISEVAFADIRPQFNAHDFLNYIRRWFSLNSINKLHE ENRPLEVFFGFHEVCCILNERSDANPYVKFSKKTKFSSTLEFVEKSKATHYLVSIPTEKV YTSNFVHIPQTMGELKAVQSADQFSLADNLLSFLTNTVAGKATLPVVLLVFITQTSKNNK RTSHDLFLIKTKHSPKEIIQKKRALSHETFEQWFYELSIEVVLLISMNSRDGNAVNNGIK DWFKKVSVVGTGTLGSAVIDHFVRQGCSEEVNIVDCDMLFPHNLSRHTLTTNMVMTSKVR SIQEAYRGILNQKINTIEGNFLALNPNDKERLFKDTELVMDFSTSIAVERKLAKEGQAYR RCTSFLNPKGDEIVLLMEDRDRHSKLDLLEMDYYRNLIVDEKFVRHLEQTETVRTNSFSC RSESMVLNYENVRVLAAIISKQIRKYYAQKEACLNIWHFDAANGTVVNLPMTITNWRNED LEGIHVYISDAVEKEIKAIADVSPDTETGGCLFGSYDRDYNNIYVYYMVPASEDSIQTAV SFVRGIKGLTTEYERITKLTYNQVRYLGEWHSHPNMPNTPSDTDKKQFEELWEEQQSQDL PFVQMIHGNNGIFVKAKDSIL Prediction of potential genes in microbial genomes Time: Sat May 28 07:37:47 2011 Seq name: gi|281304818|gb|ADEF01000054.1| Prevotella timonensis CRIS 5C-B1 contig00061, whole genome shotgun sequence Length of sequence - 1467 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 14 - 1342 505 ## HRM2_39480 transposase (IS4 family protein) - Prom 1362 - 1421 5.8 Predicted protein(s) >gi|281304818|gb|ADEF01000054.1| GENE 1 14 - 1342 505 442 aa, chain - ## HITS:1 COG:no KEGG:HRM2_39480 NR:ns ## KEGG: HRM2_39480 # Name: not_defined # Def: transposase (IS4 family protein) # Organism: D.autotrophicum # Pathway: not_defined # 1 438 2 430 432 150 28.0 8e-35 MRDCDIKFVNKEITPFGGLSLFFKMLEKCHFEEHVMQSGVPLQGSNRGYDPIQLILGLFA GVWCGASCFGHLDVVRYDTALCDLLGWKRGADHRAYQRYLNKFSQAVNQRVFGNLFRWFF SELKFDNYTLDFDSTVMVREGNQEGAAKGYNPKRPGRLSHHPLLAFVSDVRMIANYWLRP GNTSASTNYLSFLEDTLSILEGKRVGLVRMDSGFFAKEILDYLENKGLHYIIACRFNNRI KYSLTHERKWIEQIDGLEISETIYQANSWEKPRRIVMVRQEIEKRPKAAGKQIKQMDLFE DEEDFGKYRYSCFVTDLDLPAKIVYDSYRGRADSENRIKELKNDFSIDDFVTHNFWATEA CGSFIVMAYNFMSLFRHALINSNKKKFLKTIRYELLSTPAYLGRTKDKHILYLARSLKTR QSFLSIWKKLKDFSLPYDTEKS Prediction of potential genes in microbial genomes Time: Sat May 28 07:38:02 2011 Seq name: gi|281304787|gb|ADEF01000055.1| Prevotella timonensis CRIS 5C-B1 contig00023, whole genome shotgun sequence Length of sequence - 40427 bp Number of predicted genes - 37, with homology - 30 Number of transcription units - 20, operones - 10 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 106 - 1284 1135 ## COG0019 Diaminopimelate decarboxylase + Prom 1343 - 1402 7.6 2 2 Op 1 . + CDS 1447 - 2055 348 ## PRU_0674 thiamine-phosphate pyrophosphorylase-like protein 3 2 Op 2 . + CDS 2119 - 3057 856 ## COG0462 Phosphoribosylpyrophosphate synthetase 4 2 Op 3 . + CDS 3071 - 3607 514 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 3840 - 3891 17.0 5 3 Tu 1 . - CDS 3724 - 3819 61 ## - Prom 3890 - 3949 5.0 + Prom 4039 - 4098 2.5 6 4 Tu 1 . + CDS 4182 - 4352 134 ## + Term 4358 - 4392 2.3 - Term 4346 - 4379 2.1 7 5 Op 1 . - CDS 4385 - 5221 934 ## PRU_1312 putative lipoprotein 8 5 Op 2 . - CDS 5236 - 5793 423 ## COG1898 dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes - Prom 5814 - 5873 6.2 + Prom 5856 - 5915 6.7 9 6 Op 1 . + CDS 5935 - 7047 1086 ## PRU_1314 hypothetical protein 10 6 Op 2 . + CDS 7008 - 7589 438 ## PRU_1315 FHA domain-containing protein 11 7 Op 1 . + CDS 8493 - 9230 314 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 12 7 Op 2 1/0.000 + CDS 9295 - 10626 1155 ## COG0527 Aspartokinases 13 7 Op 3 . + CDS 10641 - 11819 980 ## COG0019 Diaminopimelate decarboxylase 14 7 Op 4 . + CDS 11821 - 13053 740 ## BT_1472 hypothetical protein 15 7 Op 5 . + CDS 13056 - 13892 520 ## gi|282881324|ref|ZP_06290004.1| hypothetical protein HMPREF9019_0848 16 7 Op 6 . + CDS 13893 - 15896 1917 ## COG3855 Uncharacterized protein conserved in bacteria + Term 15919 - 15957 5.2 - Term 15964 - 16010 -0.8 17 8 Op 1 6/0.000 - CDS 16017 - 17279 1267 ## COG1228 Imidazolonepropionase and related amidohydrolases - Term 17288 - 17329 4.5 18 8 Op 2 6/0.000 - CDS 17338 - 18813 1154 ## COG2986 Histidine ammonia-lyase 19 8 Op 3 . - CDS 18896 - 19210 247 ## COG2987 Urocanate hydratase + Prom 19488 - 19547 5.0 20 9 Op 1 . + CDS 19615 - 19836 252 ## 21 9 Op 2 . + CDS 19833 - 19952 90 ## gi|282881329|ref|ZP_06290009.1| hypothetical protein HMPREF9019_0853 + Term 20034 - 20067 1.2 + Prom 20170 - 20229 3.6 22 10 Tu 1 . + CDS 20250 - 20378 135 ## 23 11 Tu 1 . + CDS 20534 - 20719 180 ## gi|282881330|ref|ZP_06290010.1| hypothetical protein HMPREF9019_0854 + Term 20801 - 20834 1.2 - Term 21396 - 21432 -0.8 24 12 Op 1 . - CDS 21579 - 21773 87 ## 25 12 Op 2 . - CDS 21869 - 21991 84 ## - Prom 22135 - 22194 17.1 + Prom 22386 - 22445 13.3 26 13 Tu 1 . + CDS 22469 - 23368 638 ## COG0863 DNA modification methylase + Term 23397 - 23441 5.5 27 14 Tu 1 . - CDS 23348 - 24358 433 ## gi|282881332|ref|ZP_06290012.1| MamI restriction endonuclease - Prom 24405 - 24464 7.3 - Term 24830 - 24874 -0.2 28 15 Op 1 1/0.000 - CDS 24909 - 27335 2004 ## COG0210 Superfamily I DNA and RNA helicases 29 15 Op 2 . - CDS 27332 - 28063 441 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Term 28064 - 28095 -0.9 30 15 Op 3 . - CDS 28118 - 28795 1021 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins - Prom 28822 - 28881 8.5 + Prom 28746 - 28805 7.5 31 16 Op 1 . + CDS 28988 - 30469 1487 ## COG0442 Prolyl-tRNA synthetase + Prom 30473 - 30532 4.3 32 16 Op 2 . + CDS 30628 - 32319 1456 ## COG2985 Predicted permease + Term 32352 - 32402 9.5 33 17 Tu 1 . - CDS 32347 - 32514 130 ## - Prom 32551 - 32610 5.2 + Prom 32465 - 32524 3.7 34 18 Tu 1 . + CDS 32549 - 34915 2176 ## PRU_1227 putative thiol protease/hemagglutinin PrtT - Term 35225 - 35265 6.1 35 19 Op 1 . - CDS 35302 - 37863 2575 ## COG0058 Glucan phosphorylase 36 19 Op 2 . - CDS 37886 - 39607 1318 ## COG0438 Glycosyltransferase - Prom 39815 - 39874 3.9 + Prom 39533 - 39592 4.3 37 20 Tu 1 . + CDS 39687 - 40112 304 ## gi|282881341|ref|ZP_06290021.1| conserved hypothetical protein + Term 40307 - 40365 1.4 Predicted protein(s) >gi|281304787|gb|ADEF01000055.1| GENE 1 106 - 1284 1135 392 aa, chain - ## HITS:1 COG:sll0873 KEGG:ns NR:ns ## COG: sll0873 COG0019 # Protein_GI_number: 16330194 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Synechocystis # 16 391 20 386 387 386 48.0 1e-107 MSMKINSVTYEEIHRPIYILEEEKLRRNLQLIRHVATTADVEIILAFKAYALWKTFPIFR EYIHATTASSLNEALLGFHAFGEPTHTYSPAYTDDEMEEIVRCSSHVTFNSLSQYERYHV LARQVQPNVQLGLRINPEYSEVGTDLYNPCAPGTRFGVTADQLPPSLPNDLTGFHCHCHC ESGADVFQRTLAHIEEKFSHWFDELSWINFGGGHLMTRQDYDVDLLIALLQNFKQRHPHL QVILEPGSAFAWQTGVLVAQVVDVVENHGIRTAIVNVSFTCHMPDCLEMPYQPTIRNATT LAPKSQNHTEKKHVYRIGGNSCLSGDFMGDWQFDHELKVGENLIFEDMLHYTTVKTNMFN GIAHPAIALLKTDGTLQMLREYTYDDYRLRMD >gi|281304787|gb|ADEF01000055.1| GENE 2 1447 - 2055 348 202 aa, chain + ## HITS:1 COG:no KEGG:PRU_0674 NR:ns ## KEGG: PRU_0674 # Name: not_defined # Def: thiamine-phosphate pyrophosphorylase-like protein # Organism: P.ruminicola # Pathway: not_defined # 1 201 1 201 202 244 57.0 1e-63 MKLVIMTKSTFFVEEDKILTALFEEGMDSLHLHKPDSSPLYSERLLSLLPERYHKKIIVH EHYYLKNEYNLSGIHLQQLTDPVPEGVRGRITRSCSDIQLLRETKRKADYVFLEKIFDSI EDPTQKASFNLLQIEEAARKGLIDRHVFAVGGMHLDNIKLAKEYGFGGVVIRGDLWNHFN IHNEIDFKALIAHFQKLKKAVG >gi|281304787|gb|ADEF01000055.1| GENE 3 2119 - 3057 856 312 aa, chain + ## HITS:1 COG:HP0742 KEGG:ns NR:ns ## COG: HP0742 COG0462 # Protein_GI_number: 15645362 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Helicobacter pylori 26695 # 7 310 13 317 318 327 53.0 2e-89 MSDNDSFLIFSGTKTRYLAEKICASLGCPLGNMVMTKFSDGEFAVSYEESIRGKNVFLVQ STFPNSDNLMELLLMIDAAKRASARHIIAVIPYFGWARQDRKDKPRVSIGAKLVADLLSC AGIDRLITMDLHADQIQGFFNVPVDHLYASGVILPYLQSLKLDNLVIASPDVGGSKRANT YAKYLGCPLVLCNKTRARANEVESMQIIGDVNGKNVVLIDDMVDTAGTITKAADVMKAAG ALSVRAMASHCVMSGPANERVQQSSIEEIVFTDSIPYTQRCSKIKQLSVADMFAETIRRV IHNESISSQYLI >gi|281304787|gb|ADEF01000055.1| GENE 4 3071 - 3607 514 178 aa, chain + ## HITS:1 COG:BS_resA KEGG:ns NR:ns ## COG: BS_resA COG0526 # Protein_GI_number: 16079372 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus subtilis # 45 160 45 155 181 68 29.0 7e-12 MKPITGIIIMLAGWLMMSSCQQKKQQPAAPAAPQEQKQDTENTIPTFTMNDINGKPVAIQ DEMAKNKLTILDFWASWCGPCMHEAPNVVAVYNDYQSKGLGIVGISLDNDEAAWKEAVEQ LHMNWTQLSDLKGWDNEAARLFRVNSIPHTVIINSKGEVLAEDLRGDELRKFVAAQLD >gi|281304787|gb|ADEF01000055.1| GENE 5 3724 - 3819 61 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFLWSLGWFYKLALLDFELIFEVKMQESEGV >gi|281304787|gb|ADEF01000055.1| GENE 6 4182 - 4352 134 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MELATKWGKNEQKIAFPNSILRKIKVPKIVIFLYETQVSRRRKQAKIKGMKMGKSI >gi|281304787|gb|ADEF01000055.1| GENE 7 4385 - 5221 934 278 aa, chain - ## HITS:1 COG:no KEGG:PRU_1312 NR:ns ## KEGG: PRU_1312 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 20 278 5 256 259 217 41.0 4e-55 MTIKDVTVKKLNHRTLPLSLFLFTLLLVLGSCGSEKKKNVQDAIQEDVQAKKLLQGIWLN EDEGSVVFKVHGDTIYYPDSTSIPVYFKIVQDSLILQGNAITQYAIVKQAPHLFIFKNPY GDVVRLVKSDDPEDRYAFMSKQPVALNQNSLIKRDTVVHAGAERYHLYVQVNPTTYKIIK NTYTDEGVEVGNIYYDNIIHVSVFNGANRIFSRDFKKQDFKTLIPSDYYNQCILSDFLFD KITADGVTYRAYLPIPDSTTSYVIKVLISFTGKFELSI >gi|281304787|gb|ADEF01000055.1| GENE 8 5236 - 5793 423 185 aa, chain - ## HITS:1 COG:MA3780 KEGG:ns NR:ns ## COG: MA3780 COG1898 # Protein_GI_number: 20092576 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes # Organism: Methanosarcina acetivorans str.C2A # 2 181 1 181 183 204 56.0 1e-52 MMKFTETPIQGVWIIEPKVFNDARGYFFEAWKQAEFNAHIGEVNFIQDNESQSSYGVLRG LHYQKGAYSQAKLVRVIQGSVLDVAVDLRKSSPTFGKHVAVELSADNKRQLFIPRGFAHG FLVLSQEAIFTYKVDNVYAPQHEAGIRWNDEDLNIQWPLDPACFITSEKDLNACSFREAE VFEDI >gi|281304787|gb|ADEF01000055.1| GENE 9 5935 - 7047 1086 370 aa, chain + ## HITS:1 COG:no KEGG:PRU_1314 NR:ns ## KEGG: PRU_1314 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 362 11 372 377 259 41.0 1e-67 MIELERHIEILLLNNDCVIVPNFGGFMTHHVEAHYDEEQEMYYPPLRTIGFNPQLTLNDS LLAQSYIDVYDISYPEALQRIDSEVSEVKQHLANEGSYEMSDLGTIFYHHDGSYTFQPCE AGILTPELYGLSTVDITPLRRVQVRTTAPAPQLEESTNPKNVPIQTHSVLPAETEEEASA DTEVIEVRPSRTIEIKVSVLRNLAAACLAVLAFFLFPATLHDAGNTADMFGKINTRLLYR IMPKDVTTGNTQTDAQPTKQKAEKVVKAEQPQEAVPTTAKQAATEEKAEPFYTIVLASRV TIRNATTYVEELQKQGVKEAEVYTKAKTTRVIFGHYATEQAAYQALNSLRHKPAFTEGWV MKIKHPTATR >gi|281304787|gb|ADEF01000055.1| GENE 10 7008 - 7589 438 193 aa, chain + ## HITS:1 COG:no KEGG:PRU_1315 NR:ns ## KEGG: PRU_1315 # Name: not_defined # Def: FHA domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 18 192 1 176 176 236 65.0 3e-61 MGHENQAPNRNPIEILTVKRVRCPKCDYYLTFDETKYTDGQSLVFQCPACNKQFGIKLGV SKQKDKQQDETPDEQATVNYGELVVIENVFHYKQVIPLQLGINVIGRYQKGNDINCPIET TDPSVDMTHCRIQVSKDKRGGLKYELSDGPSFTGTFVHNEILGDRERRIIYDGTLFTIGA TSLILRTPHAEEE >gi|281304787|gb|ADEF01000055.1| GENE 11 8493 - 9230 314 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 11 222 14 222 223 125 35 4e-28 MLVDYQKVQIYQADTLVLKDVDFQVEEGEFIYLIGKVGSGKSSLLKTIYCELDIHTEEGT KAEVLGRDLIHIKRKQVPGLRREMGIIFQDFQLLHDKNIYINLKFVLKATGWKDKKEIDA RIDEVLSAVEMTEKKYKMPHELSGGEQQRIAIARALLNHPKMIVADEPTGNLDPETAHNI VKLLKEITLTGTAVVMSTHNIPLLDQYPGIVYRAKDGLLEDITSSYNKSDLKVDALQDTQ ESQEA >gi|281304787|gb|ADEF01000055.1| GENE 12 9295 - 10626 1155 443 aa, chain + ## HITS:1 COG:VC0391 KEGG:ns NR:ns ## COG: VC0391 COG0527 # Protein_GI_number: 15640418 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Vibrio cholerae # 3 440 34 479 479 241 33.0 2e-63 MKVMKFGGTSVGSPTRIKNVATLITTSGQPTFVVLSAMSGTTNTLIEIADYLYKKNPEGA NEVINALERKYLEHIEELYSTEVYKQKTQQFLVEEFNYLRLFTKDLFTSFEEKCIVAQGE IISTTMMVNYLQEQGIKAVLLSALDFMRTDKNGEPNLPYIKEKLAEQMAANSEQQIYLTQ GFICRNAYGEVDNLLRGGSDYTASLIGAALPAEEIVIWTDIDGMHNNDPRVVDDTEAVEQ LNFEEAAELAYFGAKILHPTCVQPAKYAGIPVRLKNTLEPDADGTLINNTIKQGEIKAVA AKDNIVAIKIKSSRMLLATGFLRKVFEIFESYQTPIDMIATSEVGVSMSIDDDSHLDEIV NDLMKFGTVTVDRDMCIICVVGDLAWSNVGFETLALDAMRHIPVRMISYGGSNYNISFLV KASDKKKALQSLSDMLFHHQEVE >gi|281304787|gb|ADEF01000055.1| GENE 13 10641 - 11819 980 392 aa, chain + ## HITS:1 COG:jhp0275 KEGG:ns NR:ns ## COG: jhp0275 COG0019 # Protein_GI_number: 15611345 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Helicobacter pylori J99 # 10 392 8 382 405 273 41.0 6e-73 MNALPSAACLNTKQTPYYYYDTQLLHRTLDAIKRETDKHAHFEVHYALKANAHPQLLQQI SQAGFGADCVSGGEITAALKAGFPANKIVFAGVGKRDDEIRLALQQHIFCFHVESLEELE VVNALAAQEQQVARVALRINPNVGAHTHAHITTGLSENKFGIPLTQMNTAIDACSRLEHI TLIGLHFHIGSQITDMSDFVSECQRINELQTELNQHDIHLRYINVGGGLGVNYDDPDGGA IPDFQAYFDTFAQHLHYTKEQTIHFELGRSVVAQCGSLISKVLYIKEGEHKKFCIIDAGM TELLRPALYQAHHKIENRSSQGALETYDVVGPICESSDVMAQGVLLPSCHRGDILAIRSA GAYGESMASQYNGRPLVQGYLSNDFSLEERKI >gi|281304787|gb|ADEF01000055.1| GENE 14 11821 - 13053 740 410 aa, chain + ## HITS:1 COG:no KEGG:BT_1472 NR:ns ## KEGG: BT_1472 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 71 335 50 318 390 148 34.0 4e-34 MIINETTLIISILVLLLALVAPLCSPYFRFRRDLRRLITTEEVSDEEEIVETAEDVASSQ TNDNTVNDIQTAEPPSITVLVTVHEQAKELAKHLPALLEQEYESAFEVVVVAEQGDHETE MVLKRFANNPHLYATFVPTSSRYMSRKKLAITLGVKAAKYEWILLTEADCQPASSTWLLE MSRHCTQEAQLVMGYSQYESAAPTLYQLERWYSDLYLLHQAHHSIAYRTNSCNLMFRKSG FIAQDGYRGNLQLLRGEYDFIVNKFAAPQSNTVCIEPASWMIEDSPTKKKRRNQLLFELA SRPLLQRSFRLHLIYKVDQAMLYLSYLVTFIVLGIAISEADWMLIVTTVIALLCTIGMRM WVITKPLKFFLPHLSTWQVLCYEPTIVWRNLLFRQRFRKADDYDFTSHKL >gi|281304787|gb|ADEF01000055.1| GENE 15 13056 - 13892 520 278 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881324|ref|ZP_06290004.1| ## NR: gi|282881324|ref|ZP_06290004.1| hypothetical protein HMPREF9019_0848 [Prevotella timonensis CRIS 5C-B1] # 1 278 1 278 278 508 100.0 1e-142 MNIELYLPPNVAKQPLYQQYFTLLEEGLAARSDMTLSTQFPQLIHVFGAWNAQTSKRITQ AHRRLIPTVYSPLGELAPWWFHRQELRLSPTRLLAQKNATKKATTVLVWGENERRNIQQR QWSDRVALIPNPILTATITPQDCLEQLVTLYEQTIREHDQRMRQAIAKKMTIIEEDAPLE KEFCTQVLYLRYQYHRRNISKTALAQLATSLMTVDYDEDALVQMLITLHEEKFAARILQL LEEDKQITEGFMPLNPLDDKHTKRLREAVNTTELNTIK >gi|281304787|gb|ADEF01000055.1| GENE 16 13893 - 15896 1917 667 aa, chain + ## HITS:1 COG:CAC1572 KEGG:ns NR:ns ## COG: CAC1572 COG3855 # Protein_GI_number: 15894850 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Clostridium acetobutylicum # 1 660 3 661 665 762 57.0 0 MEMEYKHPTLQDLRYLELLSQSFPTIADASTEIINLQAILHLPKGTEHFLADIHGENEAF QHVLKNASGNIKRKVSELFGNTLRESEKRELCTLIYYPEQKLQLVKAAEQDIYDWYHITL HQLVMVCRDVSSKYTRSKVRKALPKDFSYIIQELLHENAGVTNKVAYYNVILETIISTGR ADDFIIALAHVIQRLVIDQLHILGDVYDRGPGAHIIMDTMEHYHSWDIQWGNHDVLWMGA CAGNNACICNVIRLSLRYANLTTLEEGYGINLVPLATFAMETYGDDPCEAFYPKLSGGSK EVAEKTLRLTALMHKAIAIIQFKEEAQLYERHPEWKMQNRALFNFVNYEKGTITLDGKEY ELHDHYFPTVDPNHPNELTPEEKELMQRLRHSFMVSEKLHKHMRLLLQHGCMYAIFNGNL LFHASIPLNEDGTLKEVEIYPGRKYVGRQLMHQTGMMIRTAFQHDAPNDEHQYAIDYFLY LWCGPDSPLFNKSKMSTFERYFIADKETHHEEKGYYFKLRNQEAIVDQILDAFNVKDPNR HIINGHVPVHVMNGENPIKANGKLMVIDGGFSQAYHKETGIAGYTLVYHSRGFQLVQHEP FTNTEDAILQGTDIIGTTQIVEMSAHRMLVADTDKGAELKQQIKDLEALLDAYRHGVLKE RDRQMRK >gi|281304787|gb|ADEF01000055.1| GENE 17 16017 - 17279 1267 420 aa, chain - ## HITS:1 COG:SPy2081 KEGG:ns NR:ns ## COG: SPy2081 COG1228 # Protein_GI_number: 15675839 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Imidazolonepropionase and related amidohydrolases # Organism: Streptococcus pyogenes M1 GAS # 22 412 30 419 428 280 36.0 5e-75 MKLLVTNIAFLAGIQPTDKLRLEGKEMARLETIANAFLYVEDGRIHSYGAMSDLPTCNFP SDVQQIDAKGGSVLPSWCDSHTHIVFAGSREQEFVDKIRGLSYAEIAKRGGGILNSADKL HEMSEDELYQQAMRRVDEVIRKGTGCIEIKSGYGLNTADELKMLRVIKRIKETTPLKVVA TFLGAHAVSREYAGRQSEYVDLVIREMIPAVAKENLAEYIDVFCDTGFFTPEETARILEA GAKYGMRGKIHADELASSGGVEVGVRYNALSVDHLESMTAETIETLRGSETMPTALPGTS FFLNMPFALGRKVIDEGLPLAVASDYNPGSTPSGDMKFVISLACIKMRLLPAEAINAGTM NSAYAMGLSKDYGSITKGKVANFYITKPIPSVDFIPYAYTTPIVDRIFLRGEEYIPQTEL >gi|281304787|gb|ADEF01000055.1| GENE 18 17338 - 18813 1154 491 aa, chain - ## HITS:1 COG:SPy2089 KEGG:ns NR:ns ## COG: SPy2089 COG2986 # Protein_GI_number: 15675846 # Func_class: E Amino acid transport and metabolism # Function: Histidine ammonia-lyase # Organism: Streptococcus pyogenes M1 GAS # 10 476 12 479 513 443 48.0 1e-124 MIHKISAAHLTIEEVGAILENHATLELSDDARQRIVRCRKYLDKKIAESDVPIYGVTTGF GSLCNVSVDKDRLAQLQVNLIMSHACGVGSRVPNDIVKIMLFLKAQSLSYGYSGCQVETV ERLIDFFNNDIYPVVYTQGSLGASGDLVPLAHLCLPLLGMGEVEYKGERMSGKALLQKMN WKPIQLASKEGLALLNGTQNMNAYAVWAVLQSERLCDWADKIGVMSLEAYDGRIEPFTHA VHAVRPHKGQIDTAAHIRELLEGSELIKQPKVNVQDPYSFRCMPQVHGASKDTLAYVRSV IEIELNAATDNPTVCPDDDLVISAGNFHGEPIAQPMDFLAIALCELSNISERRIYKLVSG THNLPSFLVAKPGLNSGFMIPQYAAASIVSQSKMYSTPASVDSIPSSQGQEDHVSMGANA ATKLYQVVLNTERVLAIELFNAAQALEFRRPLKSSPAIEAIYAAYRKVVPFIENDEFMSP HIAQSVEFLRK >gi|281304787|gb|ADEF01000055.1| GENE 19 18896 - 19210 247 104 aa, chain - ## HITS:1 COG:FN0792 KEGG:ns NR:ns ## COG: FN0792 COG2987 # Protein_GI_number: 19704127 # Func_class: E Amino acid transport and metabolism # Function: Urocanate hydratase # Organism: Fusobacterium nucleatum # 1 102 568 670 673 92 44.0 2e-19 MAIQNVIGDAFRGATWVSIHNGGGVGWGEVINGGFGMVVDGSDDANRHIREMLLWDVNNG IARRSWARNKGSIDAIKREMERTPGLKVTLPNFVDDSEIEKLNF >gi|281304787|gb|ADEF01000055.1| GENE 20 19615 - 19836 252 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFFTNHPSEYNGELKARKDYNAEHCAAAMITSKDGLNTQQEYRTDDFAATMVMGNNGQK ANGNKAQKIVEQP >gi|281304787|gb|ADEF01000055.1| GENE 21 19833 - 19952 90 39 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881329|ref|ZP_06290009.1| ## NR: gi|282881329|ref|ZP_06290009.1| hypothetical protein HMPREF9019_0853 [Prevotella timonensis CRIS 5C-B1] # 1 39 1 39 39 70 100.0 3e-11 MITSEDGLKAEQKYSPGNCGATLVMGKDGLKAQWEYSPG >gi|281304787|gb|ADEF01000055.1| GENE 22 20250 - 20378 135 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLFFTNHQSDYNGELKARKDYNAEHCAAAMITSKDGLKAQWE >gi|281304787|gb|ADEF01000055.1| GENE 23 20534 - 20719 180 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881330|ref|ZP_06290010.1| ## NR: gi|282881330|ref|ZP_06290010.1| hypothetical protein HMPREF9019_0854 [Prevotella timonensis CRIS 5C-B1] # 1 61 1 61 61 104 100.0 2e-21 MITSEDGLKAEQKYSPGNCGATLVTSKDGLKAQQEYSTEDCAAIMVTSKDGLKAQWEYSP G >gi|281304787|gb|ADEF01000055.1| GENE 24 21579 - 21773 87 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MICSYTFSKRFNLGLFGNTCFLRLLQEAFMLYSRMCKNSKMILDNQKEKRSVLLIIEYET IICD >gi|281304787|gb|ADEF01000055.1| GENE 25 21869 - 21991 84 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVNTIILEAWQICINIIQVLNLVLLILHCGNLAYLKGIHL >gi|281304787|gb|ADEF01000055.1| GENE 26 22469 - 23368 638 299 aa, chain + ## HITS:1 COG:ECs1780 KEGG:ns NR:ns ## COG: ECs1780 COG0863 # Protein_GI_number: 15831034 # Func_class: L Replication, recombination and repair # Function: DNA modification methylase # Organism: Escherichia coli O157:H7 # 7 292 13 347 352 117 26.0 3e-26 MDLNCCILGDCIEKMKSIPDGSIDLVIADPPYWKVVGQEWDYQWRTEKDYIEWSLRWIRE VARILRIGGTFYCFGYFRTLTLLVPYLDNIGLELRQQIILDKGIRAVSGRATKKYKMFPN VTESILFIIKDNKRFIKPFLKSRQQALNLKAKEINEALGVKSNGGGMWSIYTGKNVCEQF PTEELWNKLSKILQFDLPYNKLAQTFNPQMGYTDVWTDIDFYKEKRYHPTQKPIKLIERL IAASSNEGDIVLDPFFGCGSTQLSCIDLKRNYIAIELDKRYYETALKRIELLNSSLSIF >gi|281304787|gb|ADEF01000055.1| GENE 27 23348 - 24358 433 336 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881332|ref|ZP_06290012.1| ## NR: gi|282881332|ref|ZP_06290012.1| MamI restriction endonuclease [Prevotella timonensis CRIS 5C-B1] # 1 336 1 336 336 650 100.0 0 MTPQKNRIKINDNLYNLYKFIDEIIVSPKHLLKKWSLITNQTPAAKLGYIGQHLASLITG VPGTGSGARGDDLSDGSEVKSCNKVDQADKCKKCGARVMRYEESCPNCNSTDILRKDDSK WLFTVRSQAELEQYLNMDRIILILMDYPNFVNRDYKDIRILCFEIYPKEDRGKVFCDLIS NHYNNIYLPKLTANLKTNPMNLHPWSYQFYKCNPIKIFECTVKDIDTNPQIQIDMKHYIK PSQERDARFPVVPMPTSLLKVEEWDELLAKANYDTEIAPLLSDPITSIVAFKKLSKKKKE ESLPYLSEKLRNYLSLRKIVSVVQKSRYSRSEDRKG >gi|281304787|gb|ADEF01000055.1| GENE 28 24909 - 27335 2004 808 aa, chain - ## HITS:1 COG:SP1087 KEGG:ns NR:ns ## COG: SP1087 COG0210 # Protein_GI_number: 15900955 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Streptococcus pneumoniae TIGR4 # 1 802 1 757 763 519 38.0 1e-146 MKELLGQLNESQQAAVTYNDGPQLVIAGAGSGKTRVLTYKIAYQIQQGMKPWNILALTFT NKAANEMKERIGQLVGHQTARYINMGTFHSIFARILRSEAARVGYRSGFTIYDESDSRSL LKAIIKEMELDDKIYKPAGVHAVISNAKNRLISPQSYAANAELMLRDQKSRRFELHRIYD VYVQRCRKANAMDFDDLLVLTYQLFKTHEDIRQKYVERFRYVLVDEYQDTNYAQQCIVWE LTKDHQHICVVGDDAQSIYGFRGANIDNMLDFEQIYEGARLFKLEQNYRSTQHIVKAANS LIKHNERQIPKDVYSENDQGEKLLFKPVYSDKEEALVVCKDIQRIMRTDGATYSDFAILY RTNAQSRSFEEEMLRQHIPYRIYGGLSFYQRKEIKDILAYFRLVVNPDDEEAFKRIINYP TRGIGNTTLQKIAASAQEHGISFWQVIAQAPTLLPTVNKGTQTKLLRFKELIEGFIAQLN QADAFKLGRDILQTSGISTDIYSNNDPEGLARQENVNELLAGLQDYTESKREEGLEQEVY LPDYLQSVALLTDLDSDDGSDSKVSLMTVHAAKGLEFPTVFIVGLEENIFPSPMAIDSPC ELEEERRLLYVAITRAEKHCILTSAKNRWRYGKLEFDTPSRFIKDIDSRFIHIEAEEETI DESIFAPYSGSHFSGDGNRRYSDRMQNSRPVASQFQADVKPKITSVQRPEQAVDPFSSSF KRQLQQAGGNFKRVTDAMTNGGRAAAASSPNPDASGLQEGSTIEHQRFGIGTVLRLEGDG ENRKATVDFKHAGTKQLLLKFARFKVLK >gi|281304787|gb|ADEF01000055.1| GENE 29 27332 - 28063 441 243 aa, chain - ## HITS:1 COG:CC0325 KEGG:ns NR:ns ## COG: CC0325 COG0744 # Protein_GI_number: 16124580 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Caulobacter vibrioides # 21 212 25 212 229 203 51.0 3e-52 MMSIIGRFLRRIIVLFFTSTILVVVAYRFIPVYITPLMVIRCVQHGELKIRHHWVPLDHI SKHMPVAVMASEDQRFLLHHGFDFQAIEKAASHNLTNKSGKKRGASTITQQTAKNVFLWP GRSWVRKGFEVYFTFLIELMWSKQRIMEVYLNSIEMGEMIYGVDAVAKYHFDTTAGELSR ADCALIAATLPNPIRFSSKTPSAYMRLRQRKIEHEMKFVPSFPREGEDINPNTTKGGIYH RKK >gi|281304787|gb|ADEF01000055.1| GENE 30 28118 - 28795 1021 225 aa, chain - ## HITS:1 COG:STM3645 KEGG:ns NR:ns ## COG: STM3645 COG2885 # Protein_GI_number: 16766931 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Salmonella typhimurium LT2 # 45 209 32 216 220 84 33.0 2e-16 MKKMKAMTLAMCLMTVFSCSTKQGTGALAGAGGGAVLGAIIGKIAGNAGVGAAIGGAVGA GTGAIIGRHMDKVAAETAAQVENAKVEEVTDKNGLKAVKVTFDSGILFASSKAILNQASK NELAKFSTVLKKNRDCHVDILGHTDSTGNDGINIPLSNDRAQSVVNYLKSCGVSSSQFQN VSGMGSSQPVATNETKAGRQQNRRVEVYLYASPEMVEKANDGKLN >gi|281304787|gb|ADEF01000055.1| GENE 31 28988 - 30469 1487 493 aa, chain + ## HITS:1 COG:BB0402 KEGG:ns NR:ns ## COG: BB0402 COG0442 # Protein_GI_number: 15594747 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Borrelia burgdorferi # 8 493 5 488 488 468 49.0 1e-131 MAKELKELTKRSENYSQWYNDLVIKADLAEQSAVRGCMVIKPYGYAIWEKMQQQLDKMFK ETGAQNAYFPLLIPKSFLSKEAEHVKGFAKECAVVTHYRLKSSEEGTGVEVDPAAKLEEE LIIRPTSETIIWNTYKNWIKSWRDLPLMCNQWCNVMRWEMRTRPFLRTSEFLWQEGHTAH ATREEAEAEAQKMLKVYADFAEQWMAVPVVQGVKSETERFAGALDTYTIEAMMQDGKALQ SGTSHFLGQNFAKSFDVTYLNKENKPEYVWATSWGVSTRLIGALIMTHSDDNGLVLPPRL APIQVVIVPISKTSEQLKAIHDQLKPIIDGLRAMGITVKFDDNDTKRPGFKFADYELKGV PVRLVMGGRDLENNTIEVMRRDTLQKETVSLEKILEYVPKLLEEMQANILKKAKDFRDAH IYECENYDEFKQKIKDGGFFLCHWDGTEETEAKIKEETQATIRCVPFGVEQTPGVDMVSG KPAKYRVIIARSY >gi|281304787|gb|ADEF01000055.1| GENE 32 30628 - 32319 1456 563 aa, chain + ## HITS:1 COG:STM3807 KEGG:ns NR:ns ## COG: STM3807 COG2985 # Protein_GI_number: 16767092 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Salmonella typhimurium LT2 # 28 563 18 551 553 372 40.0 1e-103 MDWIISLFTNNDSVAHIALLYAIVIAVGVLLGKIKVGGVSLGVTFVLFAGIVAGHVGFTG PTNILTFVQDFGLILFVFCIGLQVGPGFFESFKRGGVTLNLLSTALILLNIAVMFACYYI FFDTSDSHNLPMMVGTLYGAVTNTPGLGAANEALTAIFTKEDMPQIANGYACAYPLGVLG IIGATIAIRYICRVNLEKEDDDLAQAEGDNPNAKPCQIRLKVSNAYIAGRSLQQIKEFLN RDFVCTRLLHEDNLEIPREETVIQKDDELLIVCAEADAEAVQAFIGPTIDLPWEEEDTKQ PMISRRIVITNSSMNGKILGKMHFASVYGVNITRITRQGIDLFASQNLHLHVGDRVMVVG PEENVERVADVMGNSVKHLNVPNIATIFIGVFIGIIFGSIPISIPGMPVPLKLGIAGGPL IIAILIGRYGYKMKLVTYTTTSANMMLREIGLVLFLASVGIKAGASFVETVVEGDGLKYV YTGVLITVIPILIIGTIARLKYKFNYFTIMGMLAGTCTDPPALAYANSVCSHEAPSIGYS TVYPLSMFLRIFTAQMIVLFCCG >gi|281304787|gb|ADEF01000055.1| GENE 33 32347 - 32514 130 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTCRLNMGIRKMSLWLQRYIKKTSAANIFKKLQRVTAKYVKSETSTANRAVLTSL >gi|281304787|gb|ADEF01000055.1| GENE 34 32549 - 34915 2176 788 aa, chain + ## HITS:1 COG:no KEGG:PRU_1227 NR:ns ## KEGG: PRU_1227 # Name: not_defined # Def: putative thiol protease/hemagglutinin PrtT # Organism: P.ruminicola # Pathway: not_defined # 1 782 1 775 777 243 27.0 3e-62 MRKIFTPLALLCATTVAFSAPVGRQQARQAALAFIKSHASTNSQVATRASQAAPSLNEVA STNAYYIFNVGKGQGFVIASADDRTADVLGYAEEGTYDEQQCPASLKMLLAQYRQEVRML NNMPITTKPATTRANRTLQPIEPLLKTTWSQYGPYNLQTPMHKDKHCVTGCVATAAAQIM GYYQYPKKAPALPAYKAPSAHLQVPELAESTFEWNDILPSYRISTTQQQQDAVAKLMRYV GQAVSMDYTADDSGADSYNVILFLTRLFGYSKDMHRVFRDRYTSEEWCNLIYNELKAKRP VYYFADDVVYNYGHAFVCDGYKEGDFFHINWGWGGQFNGYYRLSVLSPREYGFKQLPSVF TREQGAIIGFRPSEGTEVFPKVVDVKEMTPLQDQSRSTSNDDFTDFDITMKCVNNYGEAF DADCGLGFWQGGRLINAVKLFSSTFKTDGKIQRNEANFKIPHTLAKGKYTVLPVYRIQGE SEWKACGGIGEMAQEIEITDTELKTSTAKPVLEVKKVDVKGGKEAGRPLFVTLTIENKGD ELYDTFDMLFKYDYVASTTTFLPARQTTDVMFELYPKVAGEFDYSFECKSGATISSKGNI TITEPKSKNIPSVEVKIEQSEENAFKAPAMKGKLIVTNSENADYCGGFDIELRCKKGDTD AAYLENKLSLADIIPANSKKEIPFSIDNVVAGAQYAIYAYGYKVEKQEDFIHGGMEYIPK RERILKTPFYMAKDASTAIAAPHVSHEPMLIYNLQGVMVGKGEQQLKSLPKGIYIIGGKK VVKGGSIN >gi|281304787|gb|ADEF01000055.1| GENE 35 35302 - 37863 2575 853 aa, chain - ## HITS:1 COG:PAB2414 KEGG:ns NR:ns ## COG: PAB2414 COG0058 # Protein_GI_number: 14520864 # Func_class: G Carbohydrate transport and metabolism # Function: Glucan phosphorylase # Organism: Pyrococcus abyssi # 18 851 11 830 835 616 39.0 1e-176 MKIKTGYANSPQWKEVTIKSRLPEQLKCLDEMAHNMWFGWNHEARSLFKSLDEKLYEEVN QNPVLLLDRLSYDRKEEIVNNAAMMQRVQDVYQQFRTYMDVEPDKSRPSVAYFSMEYGIN QVLKIYSGGLGMLAGDYLKEASDSNVDMCAVGFLYRYGYFKQSLSMDGQQVAQYEAQNFN ALPIEREVDEHGNPIVVDVPYLDYTVHAYVWRVNVGRIKLYLLDTDNDMNSPYDQSITHA LYGGDWENRLKQEIMLGVGGMLTLKKLGIKKQVYHCNEGHAALCNLQRLCDYVKSGLTFN QAMELVRASSLYTVHTPVPAGHDYFDEALFGKYMNGYPALLGISWDEFIGMGRENPDDHT ERFCMSTFACNTSQEVNGVSKLHGWVSQKMFAPIWQGYYPEESHVGYVTNGVHLPTWTST EFRRIYDKYFDASFMSDQSNEEIWHDIYQVPDAEIWETRMALKKKLVAYIREKFTENWLK NQGDPSRVMSLLERINPNALMIGFCRRFATYKRAHLLFTDIERLSKIVNNPERPVLFFFS GKAHPADGAGQGLIKKIYEISQRPEFLGKIIFLEDYDMQLARRLVSGVDIWMNTPTRPLE ASGTSGEKAEMNGVVNLSVLDGWWVEGYRDGAGWALPQKRTYENQAYQDQLDASTIYSML ENEIIPLFFRHEEQDYSKEWVKTIKNSIATIAPHYTMKRQLDDYFSKFYIKQAQRFEQLD ANNHQIAKDIAHWKENLVAHWDAINVVSKDTTFLENGGETGVRYQVKYVIDEQGLDDAIG LEIVSLRTLPDSDGREVYKIIPFKMVKHEGNQYTFVAELEPDVAGTFKLCVRMYPKNAYL PHRQDFCYVKWLD >gi|281304787|gb|ADEF01000055.1| GENE 36 37886 - 39607 1318 573 aa, chain - ## HITS:1 COG:YLR258w KEGG:ns NR:ns ## COG: YLR258w COG0438 # Protein_GI_number: 6323287 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Saccharomyces cerevisiae # 29 566 10 617 705 227 28.0 5e-59 MFGIHLFYIIFVAKYSTLMTTNELLPDYLFESSWEVCNKVGGIYTVLSTHTKTLRDLLQD RLIFIGPDCWKQRPCPYFLPDDSLFAAWQQQAKEEGLRVRLGRWDIPGKPIVILVDFEPF YAQKNQLYAEFWNLYQVDSLHGYGDYDEASLFSYAAGRVVESFYRSQLNATQRVVYHGHE WMTGLGLLYVRQHVPEIATVFTTHATSIGRSIAGNHKPLYAYLSAYQGDQMSRELNIESK HSVEKQTAHHVDCFTTVSEITASECAELLDKPVDEVLPNGFEDSFVPQGAAFTRQRKAAR KRLLQVANALMGHVFGDDTLIVSTSGRYEFRNKGIDVFIDAIHRLRQSQHLLSKDVLAVI AVPGWVSEARTDLQQRLAEAQCYDTPLSYPMLTHWLHNMEQDAVLTKLAQLGLQNQSSDR VKVMFVPCYLTGDDGILQCTYYDYLLGNDLCAYPSYYEPWGYTPLEAIAFKVPCITTNLA GFGMWAAHEAGTTRLVESGVEVIHRTDDNAADVAQDMANLLLQFANLPAEEVNRIRRKAA ALSKKALWSKFIKYYLSAYSEALKKAEERNKIN >gi|281304787|gb|ADEF01000055.1| GENE 37 39687 - 40112 304 141 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881341|ref|ZP_06290021.1| ## NR: gi|282881341|ref|ZP_06290021.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 141 2 142 142 276 100.0 3e-73 MKTILTGLALWLCTLGAMAQQQAAKPFQGRIGNAEYRIYIQMNFYDNNVEVPEQELLGTM SGFLGDSIDSRKWLFTSAKIRKNVATLQIINDYGSEDLVATLTKNSDNTFTLKQIDGSRI KIARNRKWQKLPKELVFVRSK Prediction of potential genes in microbial genomes Time: Sat May 28 07:39:47 2011 Seq name: gi|281304748|gb|ADEF01000056.1| Prevotella timonensis CRIS 5C-B1 contig00049, whole genome shotgun sequence Length of sequence - 46711 bp Number of predicted genes - 40, with homology - 38 Number of transcription units - 16, operones - 11 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 387 348 ## BVU_4150 hypothetical protein 2 1 Op 2 . - CDS 443 - 2221 1751 ## COG5016 Pyruvate/oxaloacetate carboxyltransferase - Prom 2270 - 2329 5.9 - Term 2324 - 2377 11.4 3 2 Op 1 . - CDS 2454 - 3911 1569 ## COG2195 Di- and tripeptidases 4 2 Op 2 . - CDS 3993 - 5018 852 ## PRU_1550 hypothetical protein - Prom 5124 - 5183 8.2 + Prom 5165 - 5224 6.3 5 3 Tu 1 . + CDS 5347 - 5436 96 ## + Term 5440 - 5477 -1.0 - Term 5769 - 5804 1.0 6 4 Tu 1 . - CDS 5939 - 7720 1015 ## COG2812 DNA polymerase III, gamma/tau subunits - Prom 7851 - 7910 6.8 + Prom 7788 - 7847 5.6 7 5 Op 1 . + CDS 7874 - 8215 345 ## BVU_2250 putative septum formation initiator-related protein 8 5 Op 2 . + CDS 8199 - 8609 342 ## PRU_1616 hypothetical protein + Prom 8752 - 8811 3.1 9 6 Op 1 . + CDS 8858 - 9655 812 ## PRU_1615 putative lipoprotein 10 6 Op 2 . + CDS 9670 - 10992 1074 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 11 6 Op 3 . + CDS 11048 - 12217 913 ## COG1408 Predicted phosphohydrolases 12 6 Op 4 1/0.000 + CDS 12235 - 12993 470 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Prom 13015 - 13074 6.6 13 6 Op 5 . + CDS 13106 - 13858 554 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 13874 - 13905 0.2 + Prom 13953 - 14012 1.8 14 7 Tu 1 . + CDS 14123 - 17635 2828 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 15 8 Op 1 1/0.000 - CDS 17649 - 18191 524 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 16 8 Op 2 . - CDS 18157 - 19440 945 ## COG2081 Predicted flavoproteins 17 8 Op 3 24/0.000 - CDS 19453 - 20496 1163 ## COG0208 Ribonucleotide reductase, beta subunit 18 8 Op 4 . - CDS 20594 - 23113 2220 ## COG0209 Ribonucleotide reductase, alpha subunit - Prom 23307 - 23366 9.1 + Prom 23266 - 23325 8.8 19 9 Op 1 . + CDS 23534 - 23668 74 ## gi|282881360|ref|ZP_06290039.1| conserved domain protein 20 9 Op 2 . + CDS 23733 - 24152 307 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 21 9 Op 3 10/0.000 + CDS 24145 - 25260 851 ## COG1169 Isochorismate synthase + Prom 25305 - 25364 4.2 22 9 Op 4 1/0.000 + CDS 25387 - 27099 884 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 23 9 Op 5 . + CDS 27106 - 27933 911 ## COG0447 Dihydroxynaphthoic acid synthase + Term 27958 - 27992 -0.8 + Prom 27970 - 28029 3.1 24 10 Op 1 . + CDS 28060 - 28623 436 ## Ppha_0327 hypothetical protein 25 10 Op 2 4/0.000 + CDS 28620 - 29678 958 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 26 10 Op 3 . + CDS 29683 - 30765 615 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II + Prom 30798 - 30857 5.5 27 11 Op 1 . + CDS 30980 - 32833 830 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily 28 11 Op 2 . + CDS 32833 - 33540 301 ## BF3432 putative membrane-associated phospholipid phosphatase 29 12 Tu 1 . - CDS 33571 - 34623 810 ## COG0337 3-dehydroquinate synthetase - Prom 34763 - 34822 3.7 - Term 34764 - 34798 -0.7 30 13 Tu 1 . - CDS 34829 - 35038 123 ## - Prom 35187 - 35246 5.8 + Prom 35107 - 35166 4.7 31 14 Op 1 7/0.000 + CDS 35360 - 36511 1091 ## COG0470 ATPase involved in DNA replication 32 14 Op 2 . + CDS 36593 - 37810 933 ## COG1774 Uncharacterized homolog of PSP1 + Term 37849 - 37892 -0.9 + Prom 37836 - 37895 6.5 33 15 Op 1 . + CDS 37991 - 38272 258 ## PRU_1703 hypothetical protein + Prom 38301 - 38360 5.8 34 15 Op 2 . + CDS 38463 - 40010 1387 ## COG0673 Predicted dehydrogenases and related proteins + Term 40022 - 40072 5.2 - Term 40010 - 40060 5.2 35 16 Op 1 19/0.000 - CDS 40082 - 41551 1042 ## COG0772 Bacterial cell division membrane protein 36 16 Op 2 . - CDS 41532 - 43382 1265 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 37 16 Op 3 . - CDS 43412 - 43912 348 ## PRU_1706 hypothetical protein 38 16 Op 4 22/0.000 - CDS 43929 - 44786 492 ## COG1792 Cell shape-determining protein 39 16 Op 5 . - CDS 44825 - 45847 1161 ## COG1077 Actin-like ATPase involved in cell morphogenesis 40 16 Op 6 . - CDS 45919 - 46512 526 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) - Prom 46563 - 46622 1.9 Predicted protein(s) >gi|281304748|gb|ADEF01000056.1| GENE 1 3 - 387 348 128 aa, chain - ## HITS:1 COG:no KEGG:BVU_4150 NR:ns ## KEGG: BVU_4150 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 12 128 1 117 178 166 64.0 3e-40 MSFLIIKTGFIMDYRSIINQHYPEENELKKILLTHSKSVTDKALQIVDRHPELQLDRQFI EEAAMLHDIGIVKCNAPGIFCFGTEPYIKHGIIGAEMLRSAGFPRHARVCERHTGAGIEL SNILEQNL >gi|281304748|gb|ADEF01000056.1| GENE 2 443 - 2221 1751 592 aa, chain - ## HITS:1 COG:AF1252m KEGG:ns NR:ns ## COG: AF1252m COG5016 # Protein_GI_number: 18677784 # Func_class: C Energy production and conversion # Function: Pyruvate/oxaloacetate carboxyltransferase # Organism: Archaeoglobus fulgidus # 9 472 9 446 480 184 30.0 6e-46 MKRKIQFSLIYRDMWQSSGKFQPRKDQLERIAPVIIEMGCFARVETNGGAFEQVNLLAGE NPNDAVRAFCAPFNKVGIKTHMLDRGLNALRMYPVPDDVRAMMYRVKHAQGVDIPRIFDG LNDVRNIIPSIKWAKEAGMTPQGTLCITTSPIHTLDYYVQIADTLIEAGAEEICLKDMAG IGQPTFLGQLTKMIKDKHPEIILEYHGHTGPGLSMASMLEVAKNGIDILDVAIEPLSWGK VHPDVISVQSMLKTAGFDVPEINMDAYMKARALTQEFIDDWLGYFINPQNKIMSSLLLGC GLPGGMMGSMMADLAGIHSTINNIRKKKGEEELSTDDMLIKLFDEVAYVWPRVGYPPLVT PFSQYTKNIALMNLLTIEQGKGRFVMMDDSMWGMILGKSGKVPGKVDQVLVDLAKEKGYE FTDADPHTLLKNNLDDFKKEMQENGWDFGKDDEELFELAMHPEQYRNYKSGQAKKNFLAD LQKAKDAKLGSKVSKEELTAFKHAKADAIVAPVKGQVFWEFNGEGECAPSVEPYIGKEYQ EGDVFCYIQAPWGEFVEIPAALGGKLVEVNAKQGSKLNKGDVIGYIEREQAS >gi|281304748|gb|ADEF01000056.1| GENE 3 2454 - 3911 1569 485 aa, chain - ## HITS:1 COG:VC2279 KEGG:ns NR:ns ## COG: VC2279 COG2195 # Protein_GI_number: 15642277 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Vibrio cholerae # 2 485 50 533 534 394 42.0 1e-109 MSEIKNLKPTCVWRNFHALTQVPRPSGHLEKVQQFLLDFAKKAGVEAYIDKANNVVMKKA ATPGMENRKTVILQAHMDMVPQKAPESHHNFETDPIETHIDGEWVKANNTTLGADNGMGV AAIMAVMEDKEMKHGPIEGLITADEETGMFGANDLPEGELDGDILMNLDSETWGKFVIGS AGGIDITAELDYKEVETDSTDAAVKVTLSGLRGGHSGLEIHEGRGNANKLMVRFVHDAIR QTEARLATWHGGNMRNAIPFKAEVVLTLPKENVEALKELATDWKEEFIEEYRDIEKGIEL TVEEVATPKTQVPEPIQDNLIAAIYACHNGVERMIPSLPSVVETSSNLAIIDIEAGKATF KILARSSSEEMKAYVSEMLQSCFNMAGMKVNFSGSYVGWDPNPDSELLKMLLKVYKEQNN EEGIVQVDHAGLECSIILGKYPHLDVVSFGPTIRSPHTSTERCLIKTVEPFWQFLKQALE EVPTK >gi|281304748|gb|ADEF01000056.1| GENE 4 3993 - 5018 852 341 aa, chain - ## HITS:1 COG:no KEGG:PRU_1550 NR:ns ## KEGG: PRU_1550 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 11 331 13 332 333 385 62.0 1e-105 MKLFNHQTVNIALSLLLGSAILFWMYRDFDFQLIKNVVLEEMDWTWMWLSFPFGILAEAF RGWRWKQTLEPLGERSRTSVRLNAVFLSYAVSLVIPRIGEFARCGVLNRYDNVSFPKALG TVVTERVIDSILVLFITVLTFIAQIKIFDTFFIHTGTNVDTILQQFSTAGYIVTAICAVA VLILVFFLARKLSIYNKVKTTLHDIGQGITSLRKVKNIPLFLIFTLAIWLCYFLHYYLTF YCFEATAHLGLSCALVTFIVGSIAVIVPTPNGAGPWHFAVKTMLILYGVADTDALYFVLI VHSVQTLLVAVLGIYAWIMLSFTQKRLKSVKAGNLQFTDET >gi|281304748|gb|ADEF01000056.1| GENE 5 5347 - 5436 96 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVTIMTLAVVAITVAQAIHLGNKINFKSK >gi|281304748|gb|ADEF01000056.1| GENE 6 5939 - 7720 1015 593 aa, chain - ## HITS:1 COG:lin2852 KEGG:ns NR:ns ## COG: lin2852 COG2812 # Protein_GI_number: 16801912 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Listeria innocua # 9 364 8 362 579 291 44.0 2e-78 MKDYIVSARKYRPTSFDTVVGQTALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFA KAINCLHPTADGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKSLMDQTRIPPQVG KYKVFIIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERM TTNDIINHLKKVAEKEGITYEDEALNIIAEKADGGMRDALSVFDQAASFCQGNITYAKVT EDLNVLDTDNYFNIVDLCLQNKVSDAMLLLNSIIAKGFAGGHFINGLASHIRNVLMAKDA QTLPLLEVSQQQRQKYEEQAKKCPTTFLYQALKLLNQCDINYRQSSNKRLLVEITLIQIA QITQPDDTPAGVGRSPKRLKSLFKKLAPVKDGETTQQVVGLETGKVSPVNASHSQLSSAF EKKDTNVQTATNTQTARPRLKFSDLGVSFKSLRKDSTKEVHQPETQQQTTSASTTFSNEE LRIQWNVMCNRMPPEKIGLSQRMKNLLPQITTFPQVEVVIENDILLKQLQDIKGKIQATL RMLLQNNSLLLSFRLAEAQEVTKIYSKREIFELLKKENPQLDKLCHNLGLELS >gi|281304748|gb|ADEF01000056.1| GENE 7 7874 - 8215 345 113 aa, chain + ## HITS:1 COG:no KEGG:BVU_2250 NR:ns ## KEGG: BVU_2250 # Name: not_defined # Def: putative septum formation initiator-related protein # Organism: B.vulgatus # Pathway: not_defined # 1 98 1 98 98 87 50.0 2e-16 MSRFNIILSFISHYKYLIVIVGGILIVGFLDENSFLKRVQLEWQISDLKAEIEKYSIQNE ISTQKLRELKRNPNAIKKIARENYFMKADDEDIFVLSDDQATQQSKSTDEATE >gi|281304748|gb|ADEF01000056.1| GENE 8 8199 - 8609 342 136 aa, chain + ## HITS:1 COG:no KEGG:PRU_1616 NR:ns ## KEGG: PRU_1616 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 134 1 129 132 102 46.0 3e-21 MKQLSKVQSILFLSGGAMMVIGAGCFAFMWQQHIVCWIYLLGALLFGVIQMMQTYEGSLL TVKRLKKIMTFADVLFILSGLLMVDMVFQFFKAAFSNYLTYYQLVYNKWVVLLLVAALLE MYTMHRIGHELSKEKS >gi|281304748|gb|ADEF01000056.1| GENE 9 8858 - 9655 812 265 aa, chain + ## HITS:1 COG:no KEGG:PRU_1615 NR:ns ## KEGG: PRU_1615 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 1 247 1 245 257 254 53.0 2e-66 MNKTLYLLIAVLAFTSCANTYNIQGSSNVTDLDGRMLYLKVLENNDFKSVDSCDVTHGQF HFTGHIDTARMANIFMDDESVLTFVLEEGDINIKINNTQQTVSGTPLNEKLFKFFKEYNQ LKNREAELVHKHDQAIMNGSDMALVNAELNAEAAKLSQKEDHLVTTFVTDNFDNVLGPGV FFMVTIGNQYPELTPWIEDIMSKATYQFKNDPYVKDYYQKALENEQIMNGMKEMPAAVNQ IPSNAQQLPPPASPADLAKPSKSKE >gi|281304748|gb|ADEF01000056.1| GENE 10 9670 - 10992 1074 440 aa, chain + ## HITS:1 COG:PA5541 KEGG:ns NR:ns ## COG: PA5541 COG0044 # Protein_GI_number: 15600734 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Pseudomonas aeruginosa # 2 439 3 443 445 397 45.0 1e-110 MAIFIHGGTLVNEGRVFQGSIVIEKDRIAHIVPEGQQPCGNEYQVIDATGCFVIPGVIDE HVHFREPGLTAKADIETESRAAAYGGVTSFFDMPNTVPQTTSLEALQQKHELAQRNSHIN YTFFFGASNTNADLFLQLNPHIVPGIKLFMGASTGNMLVDRSDVLTKIFRTAPLPVMTHC EDTELIRRNTTAFKAKFGDDPAMKYHPLIRSEEACYQSTALAVRLAKKYGTRLHVAHLTT ARELELFGDQENITAEAVIAHLMFSEEDYSRLGSMIKCNPAVKQKADRQALRAALTNGKI YTIGTDHAPHLLKDKEGGSCKAASGMPMIQFSLPAMLGLVDEGVLTIDRLVALMCHHPAQ LFEVNDRGFLRENYKADITIVKPHTPWTVTEDVIQSKCKWSPMLGHTFHWKVMQTICNGH IIYNNGQFDNNYRGEALRFR >gi|281304748|gb|ADEF01000056.1| GENE 11 11048 - 12217 913 389 aa, chain + ## HITS:1 COG:BS_ykuE KEGG:ns NR:ns ## COG: BS_ykuE COG1408 # Protein_GI_number: 16078469 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Bacillus subtilis # 143 385 51 283 287 92 32.0 1e-18 MIARILIFLLFLIVLPDLYIDLHYLRKKSTYTQWKRLLWWLPAILMLVYTFKMGTEKNFI PDNPAWIDNYLLLLGLLVVPKGIFSLCSLIGLGYCRIFKKHHNWGNLVGLFLSIMVVYIL VYGSTFGLRQLKINRIDIAFKDLPPAFDGYRIVHWSDAHVGTYMKSRRPLLERAVDSIRK QQADLVVFTGDLQNLQPSELYPFQDLFRSIHAKDGVFSVLGNHDYSGYIDAPNAIKVGNE RELISRQRQYGWQLLLNGHRTIHRGADSIVIAGTENDGLPPYPAKGNVHQALRGVGDNAF VVMLQHDPSAWRRIILPQSHAQLTLSGHTHGGQLSLFGFRISQLLLKEDYGLYRDGSRAL YVTSGFGGLIPFRFGVSSEIAVITLHRQK >gi|281304748|gb|ADEF01000056.1| GENE 12 12235 - 12993 470 252 aa, chain + ## HITS:1 COG:TM1693 KEGG:ns NR:ns ## COG: TM1693 COG0204 # Protein_GI_number: 15644441 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Thermotoga maritima # 56 222 60 223 247 105 34.0 1e-22 MKYLYRIYQLFIAAPLVALLTLLTTLLTTLGCILGNGHFWGYYPGKCWAWLTIRILLLPV KVEGREHLDKKQSYVFVSNHQGAFDIFLIYGFLGRNFKWMMKYQLRKMPFIGMACQAAHH IFVDKRGTAKIKQTYLEARQTLKDGMSLVVFPEGARTFTGHMGDFKRGAYMLASDLQLPV VPLTINGSFQVMPRMRDMKWVQWHPLTLTIHEPIPPKEQSSENITATLQESYQVIMNALP AELQGYQPNSDQ >gi|281304748|gb|ADEF01000056.1| GENE 13 13106 - 13858 554 250 aa, chain + ## HITS:1 COG:Rv2051c_2 KEGG:ns NR:ns ## COG: Rv2051c_2 COG0463 # Protein_GI_number: 15609188 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Mycobacterium tuberculosis H37Rv # 7 243 3 237 264 211 45.0 1e-54 MNKSDSIVIIPTYNEKENIEKIIRAVFALDKCFHVLVIDDGSPDGTASIVHGLMQNEFQD RLFILERSGKLGLGTAYITGFKWALQHDYDYIFEMDADFSHDPNDLPRLYAACHDEGYDL AIGSRYVSGVNVVNWPIGRVLMSYFASKYVRFITGFNVHDTTAGFKCYKRRVLETIPLDE VRFKGYGFQIEMKYTAYKIGFKIKEVPVIFVNRREGTSKMSGGIFGEAFFGVMRLRLDGW LRKYPPMPKD >gi|281304748|gb|ADEF01000056.1| GENE 14 14123 - 17635 2828 1170 aa, chain + ## HITS:1 COG:BH0069 KEGG:ns NR:ns ## COG: BH0069 COG1197 # Protein_GI_number: 15612632 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Bacillus halodurans # 12 1101 4 1103 1181 614 33.0 1e-175 MLNAFAMNIQDIQQLYGASPQAGALRKALEDKSVKTVFLQGLVASAAPMLFAGMAGKLQQ TILFVLQDADEAGYFYHDLIQVMGNQQVLYFPSSYRRAIKYGQRDAANEILRTEVLSKLS SGEPLYIVASPESLCEWVVSKQKLEERTLQVTVGQTVDMQTLKKSLRAFEFHEVDYVYEP GQFAVRGSIVDVYSYSCEWPYRIDFFGDEVDTIRTFDVQDQLSKEHKEQVQIVPKLSEMK EDRVPFLQLLPSTALLVMQDFTFVHDTIERIYNEGFAKQVMQEQLEGATEVEQRELMHAW QKEQQLISGRQFLQDMAGFKRIQFGLQSDMTPQVSISFDITPQPLFHKNFDLLYQTLADY AHRGYALYVFAESGKQVERLREIMKAQQENNSFTPISLAAESSNGGGGYLQLQSPSARPA TEEGEKGTVKGASIHAGYIDHQLKICCFTDHQIFERFHKYNLKSDKARAGKMALTLKELQ EMEPGDFIVHVDFGIGKFGGLVRVPTGNTYQEMIRIIYQRGDIVDVSIHALYKISKYRRS DTGEPPRLSTLGTGAWERLKEKAKKRIKDIARDLIKLYAKRQHEKGFSFSVDTFMQQELE ASFLYEDTPDQVKATAEVKGDMEKARPMDRLVCGDVGFGKTEVAIRAAFKAACDSKQVAV LVPTTVLAFQHYKTFKERLRGMPVNVDYLSRARTAKQSRQVLEDLAAGRIDIIIGTHKLL GKSVEWHDLGLLIIDEEQKFGVSTKEKLRKLKTNVDTLTMSATPIPRTLQFSLMGARDMS IMRTPPPNRYPIHTEIGTFGHEIITDAINFEMSRNGQVYFVNDRISTLPEIEKVILKYVP DCRVAIGHGQMPPEKLENVLIDFMNHDYDVLLSTSIIENGIDISNANTIIINNAHRIGLS DLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEARQRLEALETFSELGSGFNIAMQDLDIRG AGNLLGAEQSGFMEDLGYETYQKILSQAVTELRNDEFSDLYEESIASGEAVSGADFVDDC AVESDLEMYFPDNYVPGSSERMLLYRELDNIEDDNELTTYRQRLEDRFGPVPHEGVELMN VVALRRVGKRLGCEKLILKQGNMTLQFVSNPMSAYYKSKAFDSVLNYIAQHARRCDLKEV KGKRMLHVSNVSSVEEGVKILREIESSASM >gi|281304748|gb|ADEF01000056.1| GENE 15 17649 - 18191 524 180 aa, chain - ## HITS:1 COG:CC3650 KEGG:ns NR:ns ## COG: CC3650 COG0494 # Protein_GI_number: 16127880 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Caulobacter vibrioides # 1 174 1 174 187 114 38.0 1e-25 MSIKKWETLKSDYIIKRPWLTARRDEVQLPNGIIHDEYYVLEYPDWVNVIAEDCEGNLII ERQWRHGLGIVSNEICAGVIEKDEEPLDAAKRELQEETGFGGGTWSKLMTISPNPSTMTN LCHCFLAKGVEPISSQHLDRTEDIEFQLLPKTKVFEMLKNGDFMQALMIAPLWKYFSEHL >gi|281304748|gb|ADEF01000056.1| GENE 16 18157 - 19440 945 427 aa, chain - ## HITS:1 COG:all4556 KEGG:ns NR:ns ## COG: all4556 COG2081 # Protein_GI_number: 17232048 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Nostoc sp. PCC 7120 # 42 410 1 370 370 308 40.0 2e-83 MLSIAVIGGGAAGFMAAITAKRQMPNAHVCIFEKGKKVLAKVTVTGGGRCNITNSFAQVT DLKQVYPRGDKLMKRLFKVFSYQDAYQWFEDNGVKLTTQADQCVFPQSQTSQSVIDCLVG LAHQWGVDIYTEHYVKKITPLENGDIKLYFARQEPLVFNRVAITAGGSPLAEQLQYLSDI GHKIEPPCASLFTFSIKEQRLTELMGTCVDPVYLSIPGTKLRSEGTLLITHWGLSGPSTL KLSAYAARILNDRNYQFDVSVNWIHTTNTQIVADTLRQTAMANAQKQLHSVRPYMLSARL WNYLIGRAGFSVQQKWNELGSKSINKLTETLTNDTYTVAGKGTWKEEFVTCGGISLKSIN LTTLESKACPNLFFAGEVVDVDGITGGFNLQAAWTMGYVVGLNMAKEPSNHQNITNHVNQ KMGNIKV >gi|281304748|gb|ADEF01000056.1| GENE 17 19453 - 20496 1163 347 aa, chain - ## HITS:1 COG:TP0053 KEGG:ns NR:ns ## COG: TP0053 COG0208 # Protein_GI_number: 15639047 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Treponema pallidum # 2 347 6 351 351 506 70.0 1e-143 MTQLKRNSLFNPNGDTDLRLRRMIGGNTTNLNDFNNMKYQWASDWYRQAMNNFWIPEEIN LTQDTKDYPRLDKAERTAYDKILSFLVFLDSLQSNNLPSLCEYITANEVNLCLHIQAFQE CVHSQSYSYMLDTICSPEQRNDILYQWKTDEHLLRRNTFIGNCYNEFHEKQDLYALMKTC IANFILEGIYFYSGFMFFYNLSRNGKMSGSAQEIRYINRDENTHLWLFRNIIKELKKEEP EMFTPEKVKVYEEMMREGVRQEIAWGQYVIGNDIQGLNAQMVTDYIHYLGNLRWHSLGFD YLYEDNQKEPEDMKWVAQYSDPNMVKTDFFEAKSTAYAKSTAIEDDL >gi|281304748|gb|ADEF01000056.1| GENE 18 20594 - 23113 2220 839 aa, chain - ## HITS:1 COG:TP1008 KEGG:ns NR:ns ## COG: TP1008 COG0209 # Protein_GI_number: 15639992 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Treponema pallidum # 1 839 1 845 845 1093 62.0 0 MDITKRNGSTEQYDKEKIATAIKKSFISTKHEIDDATIYQMVQSVEDIVCTNHIKQNVES IQDEVEKALMKNGYYAEAKSFILFRWQRTEIRRTYRRITEDLQDEHITEVLKHIAADFTD KEYSILLLIDKYASFSKAGMTATERMDALIKAAVELTTQEAPEWEFIAARLLNYQLNKRI ARFEDSEGLMSLYDKMKFLTDRNLYGAYILQQYSKAEIEQAATFMDASRNHLLNYSGLEL LIKRYVIRNFDNNPIESVQEMFLGIALHLAMNEPQDRMMWVQRFYNMLSKLQVTMATPTL SNARKPFHQLSSCFIDTVPDSLEGIYRSIDNFAQVSKFGGGMGLYFGKVRAAGGRIRGFK GAAGGVIRWMKLVNDTAVAVDQLGVRQGAVAVYLDVWHKDLPEFLQLRTNNGDDRMKAHD IFPAVCYPDLFWKMAEENLNQDWYMFCPNEVMTAKGYNLEDYYGEEWEKRYWDCVADTTI SRRIMPIKEIVRLILRSAVETGTPFTFNRDTVNRANPNHHKGIIYCSNLCTEIAQNMSQI EEVSNEIRTEEDDTVVVRTVKPGDFVVCNLASLSLGHLKLEDETEMREVVSSVVRALDNV IDLNFYPLPFAKITNRTYRSIGLGVSGYHHALAIRGIKWESEEHLSFVDKVFERINRLAI EASSDIAKQKGSYKYFEGSDWQTGEYFTKRQYTSPEWQALAKKVSQQGMRNAYLLAIAPT SSTSIIAATTAGVDPVMKRFFLEEKKGAMLPRVAPSLSDKTYWVYKSAYLIDQSWSMRAA GIRQKHIDQAQSVNLYITNNYTMRQLLGLYTLAWHCGVKTIYYIRSKSLEVEECESCAS >gi|281304748|gb|ADEF01000056.1| GENE 19 23534 - 23668 74 44 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881360|ref|ZP_06290039.1| ## NR: gi|282881360|ref|ZP_06290039.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 44 1 44 44 62 100.0 9e-09 MGYDCNVVPNVLVIKKISKLVRISRILAEEVVSMLKCAVFLLKT >gi|281304748|gb|ADEF01000056.1| GENE 20 23733 - 24152 307 139 aa, chain + ## HITS:1 COG:DR2406 KEGG:ns NR:ns ## COG: DR2406 COG2050 # Protein_GI_number: 15807396 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Deinococcus radiodurans # 16 119 39 141 159 70 44.0 8e-13 MDIEKIKDMIACCDGLSNTLGMEFLSTPEPNTCMARMEVNHKNKQIFGFLSGGATLALAE NLAGVGSMAICPDKICVGINVSGNHVRTVMEGETVTAFGRLQHQGTTLHQWHIEIKNEQE ELISTVQVINYVMNKSQNE >gi|281304748|gb|ADEF01000056.1| GENE 21 24145 - 25260 851 371 aa, chain + ## HITS:1 COG:ECs0632 KEGG:ns NR:ns ## COG: ECs0632 COG1169 # Protein_GI_number: 15829886 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Escherichia coli O157:H7 # 107 355 144 384 391 102 30.0 8e-22 MNSFAYYRLPDNRHFIKLTQKNGEPETYFSLTDLNGKEGFVLVPFKIDEAHPVVLIHPEK KERVRISKCSARLHDEYGATTLATSSDGRERYGEVFRCFHQQLKDGKLAKIVLARREEIS HLATIDAEAMFLEACRIYPHLCIMLVSTPQTGTWLMATPEVLLDGDGETWRTMALAGTMK AEGLPPDADCSSASTPWVDGNDMCDWSAKNKHEQQLVATYIQQCLSPFTAQLTQRGPYTV QAGDLVHLRSDFMFSLHDTKSLGSLLEALHPTPAVCGLPKAEAQRFILENEHADRSYYSG FAGLLNPNGETHLYVSLRCMQILEKSYRLYAGGGLLLDSVEQQEWEETVAKMETMKKIVA SPPTPPQKGGE >gi|281304748|gb|ADEF01000056.1| GENE 22 25387 - 27099 884 570 aa, chain + ## HITS:1 COG:lin1783 KEGG:ns NR:ns ## COG: lin1783 COG1165 # Protein_GI_number: 16800851 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Listeria innocua # 16 493 19 496 580 181 28.0 3e-45 MPYSDKENVNILTALLVVHGVKHAVVCPGSRNAPIVHNLNECPNITCHPVTDERSAGFYA LGMAQILRHPVAVCVTSGTALLNLLPAAAEAYYQHVPLVVISADRPSMWIDQQDGQTLPQ LDALGRFVSKAVSLPEPSTDDERWYCNRLVNEALLCCQRHGGSPVHLNVPISEPLFTFNV PALPTERAIRQVTATTDVGHCQPLLADIQSAQRPMIVVGQLSNKEARRMALQLCELSTDV VVVYECLGMAYHEDASRYHYPPTERLSPQHIDKVLMRMQQVGQYQPDVVVYLGGTLVSKR LKAFLRQSPAAKTWIVNERGAIYDTFQNLTGVIEGAPHDVLEVILRYVRGEKERQRLPFE YSFRSRWTTLIQQVQAQNERFHPPYSSLLAVKRFFETASNEGRYVLHAANSMSVRLVNHF ASDYVFCNRGVNGIDGSLSTAAGCSLVTTQNVYCIIGDLSFFYDQNALWHSLGGNFRVLL LNNGGGVIFQSLPGLKDSTAQQTLISAQHHTAAWGICQQNNVAYLSAHDEEELENNMNRF VNDNFDRPVVFEVFTSQEQDEQAMNEYKQV >gi|281304748|gb|ADEF01000056.1| GENE 23 27106 - 27933 911 275 aa, chain + ## HITS:1 COG:BS_menB KEGG:ns NR:ns ## COG: BS_menB COG0447 # Protein_GI_number: 16080132 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Bacillus subtilis # 5 275 3 271 271 376 63.0 1e-104 MEKRQWKSIDGFNFKEILFEEYNRIAKITINRERYRNAFTPLTTWEMSQAFAYCRECAGI RVVILTGAGDKAFCSGGDMHVKGRGGYVGTDGVPRLNVLDVQMQIRRLPKPVIAMVNGYA IGGGHVLHVMCDLTIASENAIFGQTGPKVGSFDAGFGASYLARMVGQKRAREIWFMCKQY SAHEAERMGMVNKVVPFDELEDECVAWAETMMQRSPLALRMIKAGLNAELDGQAGIQELA GDATMLYYTMDEAQEGGKAFLEKRKPDFDKYPQFP >gi|281304748|gb|ADEF01000056.1| GENE 24 28060 - 28623 436 187 aa, chain + ## HITS:1 COG:no KEGG:Ppha_0327 NR:ns ## KEGG: Ppha_0327 # Name: not_defined # Def: hypothetical protein # Organism: P.phaeoclathratiforme # Pathway: not_defined # 6 187 22 204 205 173 51.0 2e-42 MQTNQFLPQKGNYQSLIVYQKTECIYDITFYFAHHFLAKNDRTLDQMVQAARSGKQNIAE GCAASTTSSETEIKLLNVAKASLQELLIDYQDYLRVRDLAIWDVNDVKTIQTRRVCARHN DSAYYRNAIKERSDETIANIAITLIHQADIFLRKYINRVKDDFVKQGGIREQMSKARIDY RKSHELR >gi|281304748|gb|ADEF01000056.1| GENE 25 28620 - 29678 958 352 aa, chain + ## HITS:1 COG:BS_ykfB KEGG:ns NR:ns ## COG: BS_ykfB COG4948 # Protein_GI_number: 16078363 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Bacillus subtilis # 136 308 142 312 366 75 29.0 2e-13 MNMNLCYSVCKRTLHFKNPATTSRGVYQTRKSYYVTLWHVDSPSIKGVGECATLPDLSCD VCPDYEQILTEACHEVAHEGSVNYERLRPYPSILFGLETALAQIKANGSAALFDTPFARG EEGITINGLVWMGTFEEMVHRMQEKLEQGFRCVKLKIGAIDFEKELELVRAIRSHFTSEQ VQLRLDANGGFAPDEALAKLERLAKYDIHSIEQPIKQHQWQQMALLCRESPIPIALDEEL IGVNQRQEKEELLNAIRPQYIVLKPSLHGGMYGTEEWITLAKQRNIGSWLTSALESNVGL NAIAQLAAKIYGPHVTFPQGLGTGLLFTDNVPMPLEVRGDQLWFMPTNTLNG >gi|281304748|gb|ADEF01000056.1| GENE 26 29683 - 30765 615 360 aa, chain + ## HITS:1 COG:HI0194 KEGG:ns NR:ns ## COG: HI0194 COG0318 # Protein_GI_number: 16272158 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Haemophilus influenzae # 21 279 132 392 452 61 25.0 3e-09 MTYQEFISEWNNDAQTIHVQTSGSTGAPKKLNVRKDRMIESAKMTCDFLALQQGDTALLC MNLDYIGAKMMVVRSLVRQLHLIQVAPSGHPLATVDVPITFAAMVPLQVYNSLQVPEERE KLRQIKHLIIGGGAIDDVLAAQLRDFPHAVWSTYGMTETLSHIALRRLNGLESSSWYTPL QGIKVTTNADDCLVIDAPMLCDTPIVTNDIAEIRATSTSEGQNALAFRIIGRQDNVINTG GVKVHAEELENLMRNFLTFPYMITKRKHAKFGEIVVLFVQMELSGTQQQATSQSPQALLR VLHKICHRTLPPYWEPRLYIAVDKIPMTANGKPNRAEALLMAETFNFPATHVYDLDKVEA >gi|281304748|gb|ADEF01000056.1| GENE 27 30980 - 32833 830 617 aa, chain + ## HITS:1 COG:PM1683 KEGG:ns NR:ns ## COG: PM1683 COG1368 # Protein_GI_number: 15603548 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Pasteurella multocida # 22 602 24 617 649 135 22.0 2e-31 MVSKFLFGKKKSWLLTIFVLWVIVFVLQKPFFLLFTGEGLSSLFAVLWHGLPLDLSLAGY MTAVPGLLLLFGSLPFHSVHTPFVKRVVSSIYQCWMALAAVLVSLSFVANIALYPYWQFP LDATPLFYIASSPKDAIASVSYWQLLLGLATVIGISLLIYSLFKTIGRRFSTTLCQPVST LHWLLLLVFVAALFLPIRGGWSASTMNTGKAYFSNHQRLNHAAVNPLFSFMESVTHQEDF SSMYRLMDEQKAHRLVTTMLSSKSEADSTVASSFLTIQRPDIYLIVLESFSDTLMSVANV TPGLNRLKKEGVYFSNFYANSFRTDRGLLSILYGYPAPATVSLMKYPKKTAALTSMPQLL KKAGWDLQYYYGGDADFTNMRSFLINQGFLQIVEDVDFPVGQRISKWGVPDHLLFQRVKK DLRQAKTSTPILRVIQTSSSHEPFDVPFYRLNDKVLNAFAYTDSCVTDFLKCLRSSPQWN RSLVILLPDHLGAWPLDIDNFSFARYHIPMIWTGGAVRQPQKVDTFASQQDLAATLLGSL GIAHEALPFSKDMFNPAAPHFAFFMINDGFGLIDAHHGVTYDFKRQQIVHAFGDKQQQYV QAGKAYTQTIFNDIARR >gi|281304748|gb|ADEF01000056.1| GENE 28 32833 - 33540 301 235 aa, chain + ## HITS:1 COG:no KEGG:BF3432 NR:ns ## KEGG: BF3432 # Name: not_defined # Def: putative membrane-associated phospholipid phosphatase # Organism: B.fragilis # Pathway: not_defined # 9 185 6 182 221 179 49.0 1e-43 MTDSLLLFIHTLVHWDTLATIWLNGGHTDYWDNFMEICTGRFVWIPFYASLVYLMYKKFG WKDASVFFILAILLLVLNDQTSSSVIRQAVCRLRPANLDNPISSVIQIVDGYRGGKYGFP SAHAANSWGLVFLMIYLFRQRSLSVLMVLWALLQCYTRLYLGVHYVGDLLVGALLGLLNA TLVCFTVWWYVRNFAQRHRATSVSQYTKYIPIAVCVFSVVIMLILASFYDPSIGL >gi|281304748|gb|ADEF01000056.1| GENE 29 33571 - 34623 810 350 aa, chain - ## HITS:1 COG:FN0871_1 KEGG:ns NR:ns ## COG: FN0871_1 COG0337 # Protein_GI_number: 19704206 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Fusobacterium nucleatum # 57 340 59 343 350 171 35.0 3e-42 MKQNIIISHHLQTDLTKAIADCQHDYLFVLTDSTTREHCWTRIQNLEILKEAQLITIAPT DTHKDLRSVEQIWTALQNNHATRHSCLINLGGGMVTDIGGFAASTFKRGISFINIPTTLL AMVDASVGGKTGFNFNGLKNEIGVFNDANFVILNTCFLQTLDLENLRSGYAEMLKHGLLA NENRFAQLLSFNLEHPIDYQLLQQMVEDSVKIKEDIVRQDPHEKGLRKALNLGHTFGHAF ESWSLKHTPVLHGYTVAYGLTCELYLSALKSGFPTHKMHQLNQFIHENYGTLPITCHDYD ALIQLMKHDKKNVGDTINFTLLENIGKVKTDQTATVEEIKEALDFLREGC >gi|281304748|gb|ADEF01000056.1| GENE 30 34829 - 35038 123 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTVIILHVFTQIEPILNQKITSNYTFTLSFPINCYAQNIKKSERSTNTVSICAKLLNRK NVILFDDFY >gi|281304748|gb|ADEF01000056.1| GENE 31 35360 - 36511 1091 383 aa, chain + ## HITS:1 COG:CC1823 KEGG:ns NR:ns ## COG: CC1823 COG0470 # Protein_GI_number: 16126066 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Caulobacter vibrioides # 8 247 16 215 336 81 26.0 2e-15 MKFSEVIGQEEAQARLVQLVHENRVPHALMLCGPQGCGKLALALAFASYVLGERDANGQS ILASESAILNAEAMLRNWQHPDLHFTYPVIRPTGTSSDHKMISDDFGKEWRTLLNDTVYF SIDQWLECMKATTQQAQIFEAESDNLTQKLSLKSSQGGYKICLIWLPERMNQVCANKLLK LLEEPPSQTLFLMVCEEPDRLLETILSRVQRIDIPRIEDVAIEQALIQQRGIEANNAHYI ARIANGSWLRALQTLSADNENKQFLDTFKLLMRLAYMRNIRSLKKWTDSVAGFGREKQRR MLTYFSRMIRESFMYNFQQPELVYMMQEEEDFTKNFARFVNEANVIEIEELLATARRDIG QNANAKIVFFDLALHLIVLLMRK >gi|281304748|gb|ADEF01000056.1| GENE 32 36593 - 37810 933 405 aa, chain + ## HITS:1 COG:BS_yaaT KEGG:ns NR:ns ## COG: BS_yaaT COG1774 # Protein_GI_number: 16077100 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Bacillus subtilis # 47 281 3 231 275 173 39.0 6e-43 MDYKNMKFKLANGCDRGLCRRSCCRQDRPLNTYDWLADVPGNNLTTDLVEVQFKNTRKGY YHNVNGLDLKKGDIVAVEASPGHDIGVVTLTGSLVKLQIKKANLKSPEEIRRIYRIAKPV DMQKYEEAKAREDDTMIQSRKIAKDLGLQMKIGDVEYQGDGNKAIFYYIADERVDFRQLI KVLADAFHVRIEMKQIGARQEAGRIGGTGPCGRELCCATWMKNFVSVSTNAARIQDISLN PQKLAGMCAKLKCCLNYEADNYVESSRKIPNREIILQTVDGDYYFFKADILAGLVTYSTD KNLAANLETITTHRAKEIIEMNKRGEKPAQLLSDGRQKEKARPVDLLAEADISRFDQTKK RKRRRQQGSEQEATRGANQNRNHRKPMDKEGHPTERRRSEETMNQ >gi|281304748|gb|ADEF01000056.1| GENE 33 37991 - 38272 258 93 aa, chain + ## HITS:1 COG:no KEGG:PRU_1703 NR:ns ## KEGG: PRU_1703 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 90 52 141 143 85 45.0 7e-16 MRINSSFPFKSLTLIVEQTVLPHRNKYVDTLDCELIGNNGIAQGRGISYYQYDFNITQLK LHQGDSLHIKVRHDMKREILPGISNVGITLIRK >gi|281304748|gb|ADEF01000056.1| GENE 34 38463 - 40010 1387 515 aa, chain + ## HITS:1 COG:TM0585 KEGG:ns NR:ns ## COG: TM0585 COG0673 # Protein_GI_number: 15643351 # Func_class: R General function prediction only # Function: Predicted dehydrogenases and related proteins # Organism: Thermotoga maritima # 63 243 3 174 360 68 25.0 3e-11 MKKLKTLSMMLTVAAFTLLPSKGMAQFNWKYKIEGGKIVTEVPQRAAGQQSALLLKTPKL KTVRVAFVGLGMRGPGAVERWTHIPGIQVMALCDYEKERAEDCQKYLRKASMPAADIYSG EKGYEEICKRKDIDLVYIATDWLHHFPVAKCAMENGKHVAIEVPSAMNMHEIWQLIDMSE KTRLHCVMLENCCYDFFELNSLNMAQKGLFGEVIYAQGAYRHELSPFWDHYWKKDQNDKL GWRLDYNQKYRGDVYATHGLGPVAQVMNIHRGDRMKTLVAMDTKSFNGKKHVEQMSGKPC EKFANGDQTTTLIRTEQGKVIEIHHNVMTPQPYNRMYQLTGTEGFANKYPVEGYALSSKN MKQGGMSPSNDDLSGHEYLSKEDMKALEKAYASPLVTKYGDEAKEVGGHGGMDFIMDCRL VYCLQNGLPMDIDVYDLAEWCCLAELGAISMDNGCLPVEVPDFTRGGWNTIKGYSHAFAS PEEEAANDAQAKAFTAKLKEKGKRYWEKIDKKKKK >gi|281304748|gb|ADEF01000056.1| GENE 35 40082 - 41551 1042 489 aa, chain - ## HITS:1 COG:TP0501 KEGG:ns NR:ns ## COG: TP0501 COG0772 # Protein_GI_number: 15639492 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Treponema pallidum # 56 482 47 430 433 160 31.0 5e-39 MARVTDKPSGVFRSLDWWTILIYMSLLIFGWLSVCGASYTYGDTDIFSLSTRSGMQIIWI ASSIFLGFVLLMLDDRYYDMFAYIIYAVMLLLLFATIFNPHEIKGSRSWLVLGPLRLQPA EFAKFATALAVGKYMGRYGFNIHKWKDFAYALGIVLLPMLFIVAQKETGSALVYLSFFLM FYREGMPGSVLFTGVAMIIYFVVGIKYEDVQLWGLPVSLGKFIVILLLQLFSTSMVYLYC KDKKQSQLLTLISLGTTFIALLFAKFVVPFDIVWVQLVVSFALIGFLLYSWLASQYKSYL YIALFALGSLAFFYSADYVLNNVMKPHQRVRITVLLGLEKDISGVGYNVHQSEIAIGAGG LKGKGFLNGTQTKLKFVPEQDTDFIFCTVGEEEGFIGSAGVLLLFLALILRLLKMAERQP FAFGRIYGYCVASIFLFHVFINVGMVLGLTPVIGIPLPFFSYGGSSLWGFTILLFIFLRI DAACNLVHT >gi|281304748|gb|ADEF01000056.1| GENE 36 41532 - 43382 1265 616 aa, chain - ## HITS:1 COG:RSc0062 KEGG:ns NR:ns ## COG: RSc0062 COG0768 # Protein_GI_number: 17544781 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Ralstonia solanacearum # 6 592 11 629 801 270 31.0 5e-72 MKDYNLENRRYVIAGVAITIVVIYTIRLFTLQLLSDDYKKNADSNAFLKKIEYPSRGIIT DRHGKLMVYNQPAYDIMVVMNEQKGRIDTLEFCEALGITKEFYQQRMTEIKDRNKNPGYS RFTQQLFMSQLSDKEFSIFQEKMYRFPGFYVQKRSIRQYQYPYAAHILGDVAEVSPSDIE EDDYYQAGDYIGKLGIERSYEKQLRGQKGVQILLRDVHGRVQGSYQHGALDKKPIPGKNL TLSIDLQLQALGERLLEGKIGSIVAIEPSTGEVLCMVSTPTYDPRWLVGKKRSKNHLALQ RNVWKPLLNRSIMGQYPPGSTFKTTQALTFLSEGIISPSTPFACHRGFYFRGLHVGCHGH ASPLALIPAISTSCNAYFCWGLYYMMSNHKKYRNVQTAMNTWRDYMVSMGFGYKLGIDLP GEKRGLIPNAAFYDHAYKGSWNGLTVISISIGQGEVNLTPLQIANLGATIANRGYYYVPH VVRKVQGDAMDTLYTRRHYTKASKRAYNYVVAGMRSAVERGTCRSANRSDYIVCGKTGTA ENRGHDHSVFMGFAPMDNPKIAIAVYVENGGFGADYGVPIGSLMMEQYIKGKLSPASEAK AKVFQNRRIGYGKSNR >gi|281304748|gb|ADEF01000056.1| GENE 37 43412 - 43912 348 166 aa, chain - ## HITS:1 COG:no KEGG:PRU_1706 NR:ns ## KEGG: PRU_1706 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 164 1 164 166 146 52.0 3e-34 MGVDLLKGISIFVILLLLQVLIFNHIHLFGFATPLLYVYSMLLFRRNFPKWGILVCGFLA GLSVDIFSNTPGLASASMTFIGLIQPYVLILFLPRDSAEDLQPSMHTLGISAFWGYALVL VFLFCLIFFSLEAFNFFNWLQWLKCVGGSTVLTLILLMTIENVRRG >gi|281304748|gb|ADEF01000056.1| GENE 38 43929 - 44786 492 285 aa, chain - ## HITS:1 COG:lin1582 KEGG:ns NR:ns ## COG: lin1582 COG1792 # Protein_GI_number: 16800650 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Listeria innocua # 79 267 84 277 295 74 28.0 2e-13 MRNLIEFLARQHHWFVFVLLEAISLTLLFSYNNYQSSVWFSSANVVVGRIYDWSSQLEHF FSLTKVNEELTARNIALEEKISDLSEKLTTVTKDSSYVKDSLLLPVQEMKLIPAKVVSNS IIRPDNLMTINKGSKDGVKKDMGVVCGTGVVGIVYLVSPQYSVVIPLLNTKSNISCKIEN REYFGYLIWQGGATDIAYLDDIPRHARFKLNENIVTSGYSSIFPPGIKVGKILHVYNSAD GVSYRLSIKLSTNFSTLRDVSVVDNTAMKERIELMRAASDSLEAK >gi|281304748|gb|ADEF01000056.1| GENE 39 44825 - 45847 1161 340 aa, chain - ## HITS:1 COG:CAC1242 KEGG:ns NR:ns ## COG: CAC1242 COG1077 # Protein_GI_number: 15894525 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell morphogenesis # Organism: Clostridium acetobutylicum # 1 335 1 332 335 277 46.0 2e-74 MGFFSFIQEIAMDLGTANTIIISDDKIVVDEPSVVALDRRTDKMIAVGEEAKMMYEKTHD NIRTIRPLRDGVIADFTACEQMMRGLIKMVRPGRRLFSTSLRMVIGVPSGSTEVELRAVR DSAEHADGRDVYLIFEPMAAAIGIGIDVEAPEGNMIVDIGGGSTEIAVISLGGIVSNNSI RTAGDDLTADIQEYMSRQHNVKVSERMAERIKIHVGSALTDLGDEAPEDYVVHGPNRITA LPMEVPVCYQEIAHCLDKTVAKIENAVLSALESTPPELYADIVQNGIYLSGGGALLRGID KRLTDKINIPFHIAEDPLHSVAKGAGIALKNVDRFSFLMR >gi|281304748|gb|ADEF01000056.1| GENE 40 45919 - 46512 526 197 aa, chain - ## HITS:1 COG:RSc0504 KEGG:ns NR:ns ## COG: RSc0504 COG0138 # Protein_GI_number: 17545223 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Ralstonia solanacearum # 7 196 2 192 524 155 41.0 6e-38 MTGTKQIKTALISVYHKDGLESLLSKLHAEGVKFLSTGGTQRFIESLGYECQTVESVTSY PSILGGRVKTLHPKIFGGILARRDNDSDQQQMKQYEIPAIDLVIVDLYPFEQTVASNASE AEIIEKIDIGGISLIRAGAKNFKDVVIVPSKAEYSMLEEILNKEGAQTTLEERKMFAEHA FKVSSHYDTAIHTWFTK Prediction of potential genes in microbial genomes Time: Sat May 28 07:40:32 2011 Seq name: gi|281304730|gb|ADEF01000057.1| Prevotella timonensis CRIS 5C-B1 contig00054, whole genome shotgun sequence Length of sequence - 24311 bp Number of predicted genes - 21, with homology - 17 Number of transcription units - 13, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 209 97 ## + TRNA 681 - 757 73.6 # Thr TGT 0 0 + Prom 683 - 742 79.3 2 2 Op 1 . + CDS 911 - 1144 244 ## BDI_1027 hypothetical protein + Prom 1186 - 1245 3.4 3 2 Op 2 . + CDS 1343 - 1639 321 ## BVU_3755 hypothetical protein + Term 1749 - 1777 -0.2 4 3 Tu 1 . - CDS 1641 - 1847 113 ## - Prom 1981 - 2040 3.3 - Term 2035 - 2074 6.2 5 4 Tu 1 . - CDS 2266 - 2556 138 ## gi|282881384|ref|ZP_06290062.1| conserved domain protein + Prom 3017 - 3076 7.1 6 5 Op 1 . + CDS 3325 - 3522 278 ## 7 5 Op 2 . + CDS 3569 - 6346 2176 ## BT_2316 hypothetical protein - Term 6388 - 6454 1.2 8 6 Tu 1 . - CDS 6564 - 6704 59 ## - Prom 6841 - 6900 5.8 + Prom 6811 - 6870 2.8 9 7 Tu 1 . + CDS 6955 - 7878 937 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 10 8 Op 1 . - CDS 7936 - 9255 1201 ## Fisuc_1741 hypothetical protein 11 8 Op 2 . - CDS 9257 - 10036 779 ## Fisuc_1740 hypothetical protein 12 8 Op 3 . - CDS 10048 - 12420 1911 ## COG1033 Predicted exporters of the RND superfamily 13 8 Op 4 35/0.000 - CDS 12433 - 14196 225 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 14 8 Op 5 . - CDS 14218 - 15972 263 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 15 8 Op 6 . - CDS 16002 - 16616 493 ## COG1309 Transcriptional regulator - Prom 16654 - 16713 4.8 16 9 Op 1 12/0.000 - CDS 16999 - 17508 363 ## COG0602 Organic radical activating enzymes - Prom 17632 - 17691 4.8 - Term 17667 - 17720 2.8 17 9 Op 2 . - CDS 17757 - 19964 1887 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase - Prom 20205 - 20264 5.9 + Prom 20798 - 20857 5.4 18 10 Tu 1 . + CDS 20877 - 21320 513 ## gi|282879295|ref|ZP_06288040.1| conserved domain protein + Term 21412 - 21448 2.2 + Prom 21322 - 21381 2.0 19 11 Tu 1 . + CDS 21450 - 22514 448 ## gi|282881396|ref|ZP_06290074.1| hypothetical protein HMPREF9019_1598 + Term 22534 - 22580 0.3 - Term 22458 - 22489 0.2 20 12 Tu 1 . - CDS 22527 - 22961 347 ## PRU_2772 hypothetical protein - Prom 23085 - 23144 1.7 + Prom 23376 - 23435 7.0 21 13 Tu 1 . + CDS 23504 - 24311 426 ## EF2248 hypothetical protein Predicted protein(s) >gi|281304730|gb|ADEF01000057.1| GENE 1 3 - 209 97 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no NNLNIRILPTNLYVCWDSFYNIDVFKYDDVIKYFDYIWYPKVDDIIIFDYSFNFCLMIRH DGIIYALN >gi|281304730|gb|ADEF01000057.1| GENE 2 911 - 1144 244 77 aa, chain + ## HITS:1 COG:no KEGG:BDI_1027 NR:ns ## KEGG: BDI_1027 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 3 77 5 77 77 82 58.0 6e-15 MAHGHEVLHMMAGNTYESKEALVKAIINKFGEAERFHTCSAEGMTAAQLVDFLEARGKFM PASSNQFTVDETKICKH >gi|281304730|gb|ADEF01000057.1| GENE 3 1343 - 1639 321 98 aa, chain + ## HITS:1 COG:no KEGG:BVU_3755 NR:ns ## KEGG: BVU_3755 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 98 1 99 99 139 64.0 4e-32 MIKIYGMKSCPDCVAVDRQVAGDSRYQVIDIGEHVSLLKQFLHLRDTNPVFDEAKRCGAA GIPCFVLEDGTVTLRPEEAGLSSNASDAPACNIDGSGC >gi|281304730|gb|ADEF01000057.1| GENE 4 1641 - 1847 113 68 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRAKAGRSPNRNTAQGNALGMDVKTNWRAVSAKGRKNPYPYNNKIVCSRHTFSFLLLFQ NAKGVSKR >gi|281304730|gb|ADEF01000057.1| GENE 5 2266 - 2556 138 96 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881384|ref|ZP_06290062.1| ## NR: gi|282881384|ref|ZP_06290062.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 23 96 1 74 74 127 100.0 2e-28 MNKAKRSPNKMYGPRYCAASYVMSKGRAKPQQAHNPIYNKLERPVFNKLESRNHNKQSAY RLRPEWATAHSQNIVQQPTLRAKTGRSLQIILGVYI >gi|281304730|gb|ADEF01000057.1| GENE 6 3325 - 3522 278 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKISDKKMYVSPNCHVYILDDSNELMAASPEIKPTTKTEEWVEDGDKKLDNTDPFIWTDE TDPWD >gi|281304730|gb|ADEF01000057.1| GENE 7 3569 - 6346 2176 925 aa, chain + ## HITS:1 COG:no KEGG:BT_2316 NR:ns ## KEGG: BT_2316 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 198 826 205 784 888 134 25.0 2e-29 MRNMKKNASIALSFIALSTMLLHTSCTDVTNDNNGNETPNGNIYLNCQTTPNEVDANVSI TRTMSSSLAGKQIRIVEANYNYVSDNVQTEQPTRGTMIDAITDLDKNTNIDVYGYMRKSS FNAEAGANNFTGTVALNQGELSRVLVNGTAKQWDSNTPFAQMAGMYPAKGTANSPVSNFK RNGNTFMFDYAAKNSCIEQTDVMMGFVQQLYQRGQDPHPTLVLKHALTAINFAIGNNLPV GQKLTGIRMIDDRGNAATCTVSVDANGVKSFAWDKKAGTTTYGLKLKNAINVDDITAANT VLTGNKTSGKRDNLTFFVMPRTEGKVTFKLKFTNNNNQHSELAFTVDKPNWQAGHTITYT LDGGNSVNNYIFTKDVSAPVVANEQDEVAFNLTSCKALNNTQKGTFQRNCNWEVKEYEYD GKKTTTSPEWFEIAKNGNGSVTPSQIKAKFIKDKIAIEDLLDGDNGMNKYLQKKKIDQNK PYNLAGENGTDNKMSSANCYIIDGPGWYKIPLVYGNALKNGNENATSYKNGNYFPTHVYY RENNYDKKIYGDGAVEIYKDRDYIKKAWIKDNGTGNGDVEYAPASGAILWWDGDFNTPGN IANDFKVTDGGKYLTFRVTDKIKNSNAVIAVKNKDGKVMWSWHLWFTDKRQLQDFDMNNE TILSQNLGWKLLNWKGKPEKSITVTFKQKDSGKELTTTFMRRPNYTEMKGICPEYQTFRK DPFSLENTCERDGHKAAYNMGEYKRFEQRVKAKESKDYGTVIICYGVTIQNPSTLYYGGG LGATNENDFLIQPKDPKNTTIDMYWDKEKTVYDPCPAGYHLPSADILKYLSTKGKKQNAL NAWEYDIDGRKLYLPHVGILWGSNNLRGIIEFTETRYGSYDGYQKGDGVKHWKRSTLRWN VNKYDDGRDVPLNGMPVRPMKETSK >gi|281304730|gb|ADEF01000057.1| GENE 8 6564 - 6704 59 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYVLLSFGFFLVQNVSSFSRVARYTPSLSCILTSKISSKSNKANL >gi|281304730|gb|ADEF01000057.1| GENE 9 6955 - 7878 937 307 aa, chain + ## HITS:1 COG:STM4395 KEGG:ns NR:ns ## COG: STM4395 COG0697 # Protein_GI_number: 16767641 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Salmonella typhimurium LT2 # 9 307 8 307 308 154 36.0 3e-37 MRGNPPTQSIFQRPIWVSLFALTAAVAWGWAYPLIKLGFAEFGITQGMTGSKMVFAGIRF SLSGVIILLMAQLTGRDFHLRSARDSWYILLFALLNTTLHYAFFYFGLSYSEGSRAAILN SLSVFSVVIFACLFFKSDRMTLRKLTGCVVGFAGILSLNLGSAESGHFTWLGDGMIILNA LCGAATSLLTRGLGKRIDVFVGTGLALAIGGLLLVVPGLLWNGTLPRITLLGCVYLVLLI GISTVGFGLYNKLLTCNPVGKVAIYNSLIPVVGAVTSCLCLNETFHFKYLVAGLLAAAGI YIINKGK >gi|281304730|gb|ADEF01000057.1| GENE 10 7936 - 9255 1201 439 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_1741 NR:ns ## KEGG: Fisuc_1741 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 50 439 22 407 407 340 44.0 6e-92 MNLIQLSTLLLVPMFSAQASAQVETPTTIIDSLETVPEETLQETYDKDSDDALQVRVKGF LDTYHALRTTGNADWMASRTRARGEVRLEKGATALFVSLNAIYNGILKERTGIELREAYL SYTKGNLDLRVGRQIVIWGVADALRLTDCVSPIDYTEFLAQDYDDIRMPVNGLRAKYTLG AITAEAVCNPVTNFAVIPTDLRNPWAMRLPNTSLPYSIDLESGKPEKRLKNMEYGGRISV NLSGVDFSVSALRTWNKLPALRTGMTTDGKSLHIDGRYHRMTMLGADCSLPVGQFVIRAE VAKYINEAQNAAMGCEVECRNALNALIGIDWYPGNDWNASLQYCHKYTSGNLERLPIYRH AGIATARLAKDLLQNTVKISSFAYIDVADGGIFNRLSTTYALNDQTAIAIGYDYFHADRG MFKMYGKNSEAWVKLKYSF >gi|281304730|gb|ADEF01000057.1| GENE 11 9257 - 10036 779 259 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_1740 NR:ns ## KEGG: Fisuc_1740 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 9 259 10 257 257 300 59.0 4e-80 MKTRNFTLLLIALLAIGSAQAAGLSGRDIMQKVKNRPDGDTRYANVEMTLIQRSGHKRIR KLESWAMDVGKDTKKIMFFTYPGDVKGTGFLTWDYDNPRKVDDKWLYLPAMKKTRRISGK SSKTDYFMGSDFTYNDMSMRNVDEEKHQLLREENLDGHRCWVVQSIPNDKDEIYTRRVTW IRQDCLMAVKAEYYDKLNKLHRRLSISNIDKVQGFWTMHLMQMENVQTGHKTIIRMNNQR FNIKVAPNLFTVSKLEKGL >gi|281304730|gb|ADEF01000057.1| GENE 12 10048 - 12420 1911 790 aa, chain - ## HITS:1 COG:PH0287 KEGG:ns NR:ns ## COG: PH0287 COG1033 # Protein_GI_number: 14590211 # Func_class: R General function prediction only # Function: Predicted exporters of the RND superfamily # Organism: Pyrococcus horikoshii # 221 770 237 774 787 100 21.0 1e-20 MKIEKINNLFRQLANWILRHRLVVGALFAVAIAFSLVGAKRIVIRTSFDDYFLSDDPMLL KTNEFKSIFGNDYYVAVLVKNKDIFSKHSLTLIRELSNELKDSLSYADKVTSLTDLEFAS GTEEGMTIEQIVPEQIPSDAAGLKEIKRKAYSKPYLAKKMVSTDGTMTWIMVKLRPFPAD SVWKKTSDMAPDMITGKEAGHIIGKEKYAELSPAAAGMPYLSYEKVVYLKGEMGRLFLFA FIISIVVMLIVTRSLRGVIAPLLTSVLGLLISFGIIGWTGIYIDMTTIMIAVILTFACSI AYNIHLYNFFKTRFVETGRRRQSIIDAMGETGWGVSLSALTTVAAMMTFLSMNIVPMQAI GINTSICLLAILITCLFMTPFLLSFGKDRKPAVNMSKSFEGYIGNRFEQFGSFVIRHHRG IVALSVVLTIFCGIGLFFIEPAFDIEKTMGRKVPYVNKFLNLCETELGSMYAYDLMITLP HDNDAKKPKNLQKLDQLSKIADGYKLTKRHNSITDIVKDMNCTLNGNKQQFYTIPDNADM VAQLLLLYENAGGTESEYWMDYNYKRLRLQIELKDYNSNEAEKEMNDLQAEAHRLFPDAH VSVVGNIPQFTVMQQYVERGQMWSMMLSVLVIGIILVLIFGNWKVGLVGMIPNIAPAIIV GGMMGWLGYPLDMMTASLIPMVLGIAVDDTIHFINHSHVAYDKYGNYKIAINRTFRTEGL AIVMSTVVISATFMGFVFSDATQMSNWGILAVAGMVSALLADLFLTPILIDYLHIFKQEK ANINNTQNNN >gi|281304730|gb|ADEF01000057.1| GENE 13 12433 - 14196 225 587 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 347 574 34 270 329 91 31 6e-18 MIKYFQNRFALTEKGAKDLRQGIVFSTLLNLVLMLPPTYLFFFLMEYLDDMPMNAPHTLW FYLLVAAGLMVVMLVMIRRQYDSTYTTVYNESAQRRISLAEKLRRLPLAFFGERNLSDLT ATMMEDCTLLETTFSHAIPQLFASVVSIVIIAAGMFCYDWRLAIAVFWVVPFALVVLLVS RNRMDKDFTRLYHIKRGVSEQIQEGLECVQEIKSYNGENEYNQRFDQRLKTLEKGLVAGD FLTGAFVNISAVLLKLGMPTVIVVGAWMLQRGDVSVFVYLAFLLVSAMVYNPILEVCSNL AILAFLDVRIKRMKEMEAMPIQTGDTEVEVSNYDIEFHDVSFSYETDKQVLHNVSFTARQ GEITALVGSSGGGKSTAAKLAARFWDINSGKITLGGHDISDIEPETLLKNYAVVFQDVML FNASVADNIRIGKRDATDEEVRHVARLAQCDDFINRMPQGYDTVIGENGETLSGGERQRI SIARALLKDAPVILLDEATASLDAENETKIQAGISELVRNKTVIIIAHRMRTVLGADHII VLSGGTVVEQGTPDELMAHNGTFAQMVRLQQDTPSANISSKIKTETK >gi|281304730|gb|ADEF01000057.1| GENE 14 14218 - 15972 263 584 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 342 572 132 361 398 105 33 2e-22 MMKTLKRLGAYMGGRKYLLPCSVALSAVNGLLSLVPFILLWLVVRTLLIAKGNLSNTPLI DYALWAFVISVANVLLYFLALMLSHLAAFRIETNMRRKAMQRLMRAPLGYLDEQNTGRMR KIIDEDSAQTHTFVAHLLPDVASCVVAPIGVIVLLFAVDWQLGAAAIIPLIGAIGIMGYM MNPKNNQFQRLYLDAQEKMGAEAVEYVRGIPVVKVFQQTVFSFKRFYDSIISYRDLVIKC TLVWRTPMSFYILAINAFAFILVPTAIILIGHGGDTTTIIANVILYVVIAPLIASNVMKA MYLSQDLFMANEAVERLEQLTHIAPLSQHDEPKRAEAYDIRFNDVSFRYEGAEKDAVSHI NLTIPEGKTVALVGASGSGKTTIARLIPRFWDVRHGSVTIGGIDVRDMRKDELMRNVSFV FQNTRLFKTSLIENLRYGNPDATTEQINRAIDLSQSREIIDRLPQGLDTVIGAEGTYLSG GEQQRIVLARAILKDAPIVVLDEATAFADPENEQLIRKALAHLTQGKTVLMIAHRLTTVQ DADSIVVVDNGKIVEQGTHEELLSRKKQYHRMWNEYQQSVSWKL >gi|281304730|gb|ADEF01000057.1| GENE 15 16002 - 16616 493 204 aa, chain - ## HITS:1 COG:CAC0821 KEGG:ns NR:ns ## COG: CAC0821 COG1309 # Protein_GI_number: 15894108 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 1 145 1 144 200 67 31.0 1e-11 MQTLKDDIRQRIIATARAEFIAHGVRCTSIRTVARKSGVAVGNLYNYFSSKDELFCEVLR PLTKALNKHILSHNDEKFLSIDVFNMRQHQIDYIYAMLAIIKDFRPELRLLLFNSEGTSL QGYKDKMVDRQMKVGMEYLRLMKERYPHLNANISPFLVHITCSTWITVFCEIVEHEDYSD EDIKVALEQYMDFSMAGWKALLKP >gi|281304730|gb|ADEF01000057.1| GENE 16 16999 - 17508 363 169 aa, chain - ## HITS:1 COG:CAC0481 KEGG:ns NR:ns ## COG: CAC0481 COG0602 # Protein_GI_number: 15893772 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Clostridium acetobutylicum # 2 148 3 152 153 122 40.0 3e-28 MLSILSILEDTTVDGPGFRTTVYCAGCPNACPGCHNPQTWDIHNGQWMQVEDIMRVIEAD PFANVTFSGGDPMFQAEGFAELAHAIKTRTNKNIWCYTGFTFEALIKNPQQRQLLEWIDV LVDGPFVEKLKDPDLLFRGSSNQRIINVPLSLQQGKVVLWEQEDNMLAR >gi|281304730|gb|ADEF01000057.1| GENE 17 17757 - 19964 1887 735 aa, chain - ## HITS:1 COG:CAC0480 KEGG:ns NR:ns ## COG: CAC0480 COG1328 # Protein_GI_number: 15893771 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Clostridium acetobutylicum # 5 734 4 694 702 466 39.0 1e-130 MIQTIVKRDGRIVGFNDQKIMAAIRKAMLHTEKGEDERLIQQITDHISVHGKPQMSVEDI QDAVEMELMKSARKDVAQKYIAYRNQRSIARKAKTRDVFLDIVNIKNNDVTRENANMNAD TPAGMMMKFASETTKPFVDDYLLSEQSREAVAHNLLHVHDKDYYPTKSLTCCQHPLDNIL QHGFTAGHGSSRPAKRIETAAVLACISLECAQNEMHGGQAIPAFDFYLAPFVRSSYIEEV KNLENLYGDNFEHLYQTEIDDYIERPLNGLKGDARIKQHAINRTVARVHQSMEAFIHNMN TIHSRGGNQVVFSSINYGTDTSAEGRCVIRELLNSTYQGVGNGETAIFPIQIWKKKRGVS YLPNDRNYDLYCLACKVTARRFFPNFLNLDATFNQHELWRADDPKRYMYEMATMGCRTRV FENRYGMKTCVGRGNLSFSTINIVRLAIECMDVKDKEQRIAKFFAKLDDMLEITAKQLDD RFQFQKTAFAKQFPLLMSKLWGGCEQLEPNDTIESVINQGTLGIGFIGLAECLVALVGKH HGESEEAQALGIKIVTYMRDRSKDFCEQYQHNYSILATPAEGLAGKFTKKDRKEFGALPG ITDRDYYTNSNHVPVYYKCSARHKAEVEAPYHDLTRGGHIFYVEIDGDATHNPQVIMNVV DMMDRYNLGYGSVNHNRNRCMDCGYENADAHLDTCPKCGSHHIDRLQRITGYLVGTTDRW NAGKLAELNDRVTHE >gi|281304730|gb|ADEF01000057.1| GENE 18 20877 - 21320 513 147 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282879295|ref|ZP_06288040.1| ## NR: gi|282879295|ref|ZP_06288040.1| conserved domain protein [Prevotella buccalis ATCC 35310] # 1 137 1 128 130 193 72.0 3e-48 MEITQKEAKDAMKNTFCRLMLLPAAGEVRWLGTVSDLVELVHMMWYDGLTIDEHGQVLNF STSVNRLCERLGLRAPRKPNTVMNNIRNRKNYDRMLIVRCQHLMEQGEEPLARFIKEEEG GKEEGSLSPDPSPKGRGVISGSIRSAT >gi|281304730|gb|ADEF01000057.1| GENE 19 21450 - 22514 448 354 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881396|ref|ZP_06290074.1| ## NR: gi|282881396|ref|ZP_06290074.1| hypothetical protein HMPREF9019_1598 [Prevotella timonensis CRIS 5C-B1] # 1 354 1 354 354 625 100.0 1e-177 MKAYIKLELQFFENPKFIELREKEGCAGEGCVLELIRYLRVCPEGMGCQAALRNIARTCK KSKNYLLHIINDYEVFTTVDNEYFYCPYLEKTLQNIKNNNKSTVETGDTSNEQPLENRER TVQFTPSQVVDNQHPSLYINNINNINDINNIKNINHPTTMRARDDADDEKNKNHIPQPTP QQTAAPIPPSPSKQAAAAPEQPVSPPKQEVLPSNDSPRPAAPPSAADCQHELRRLNTCNK PVKAMTLNAYPHASTSHEVAEKKAKLQKCEQDILNHLYGDAAFMMSLQSLTGLCVYRSAK TRYYCLQWFRMIRHSQGKPIVDEEDAKRHLLALLQKGRKTRNDFHRWHNDQLQP >gi|281304730|gb|ADEF01000057.1| GENE 20 22527 - 22961 347 144 aa, chain - ## HITS:1 COG:no KEGG:PRU_2772 NR:ns ## KEGG: PRU_2772 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 3 140 8 155 156 108 39.0 8e-23 MKTQQLSEHFSLHELVNSATADKYHIDNMPYGATMRNLRILCQEVLEPLRKEFGPIFINS GYRCPLLNQLLHGVGNSQHMYGQAADIRLKSEQQGQAYFDFILTHCDFDQMLFEHSKFGV IWLHVSCKPNKAQNRHMALRHLRA >gi|281304730|gb|ADEF01000057.1| GENE 21 23504 - 24311 426 269 aa, chain + ## HITS:1 COG:no KEGG:EF2248 NR:ns ## KEGG: EF2248 # Name: not_defined # Def: hypothetical protein # Organism: E.faecalis # Pathway: not_defined # 95 269 234 407 1004 157 46.0 4e-37 MKKHLLSLLVALVATVSSLPMAAQEAYAVFTEPNSTLTFYYDNLRSTRPGTKYDVPTKGK IPGWAGTNTATQKIKHAVFDGSFADYRPTFTKSWFKSCVKLQDIKDIRNLNTENVINMKY MFMSCSSLISIDLTSFNTANVTDMSGMFDNCSSLKSLDLTNFNTEKVTDMYKMFYTCSSL VSLNLTNFNTEKVTDMGSMFDNCSSLASFNLTNFNTANVTDMSRMFNNCSSLTSLNLTNF NTEKVTYMACMFQKCKSLASLDLTNFDTA Prediction of potential genes in microbial genomes Time: Sat May 28 07:41:47 2011 Seq name: gi|281304726|gb|ADEF01000058.1| Prevotella timonensis CRIS 5C-B1 contig00024, whole genome shotgun sequence Length of sequence - 3113 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 1, operones - 1 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 2 - 1070 651 ## PG0851 hypothetical protein 2 1 Op 2 . - CDS 1018 - 1803 425 ## BT_0108 hypothetical protein 3 1 Op 3 . - CDS 1800 - 2189 276 ## PG1534 hypothetical protein 4 1 Op 4 . - CDS 2179 - 2652 278 ## gi|261879769|ref|ZP_06006196.1| hypothetical protein HMPREF0645_1211 - Prom 2731 - 2790 9.7 Predicted protein(s) >gi|281304726|gb|ADEF01000058.1| GENE 1 2 - 1070 651 356 aa, chain - ## HITS:1 COG:no KEGG:PG0851 NR:ns ## KEGG: PG0851 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 55 355 1 301 388 526 85.0 1e-148 MCSRYMHMASMPICFNSETASIPENIIESLQLRFRHIILLYDMDATGLREAQKQMELLAQ YNVLHLELPLQGIKSEKDISDFFALGRTEHELQSLLTDKLSELYTQTMMMLRSCEIDYEN PPDISKSVVAVNGVPLGTQDNLFCITGGEGTGKSNYVGAILAGTLGEEQLPIEKTLGLEI TANPKGLAVLHYDTEQSEAQLHKNLGKTLRRASLAAVHEYYHSLYLASLSRKDRLKLIRE SMDLFHHKHGGIHLVVIDGIADLIRSANDETESIAIVDELYRLAGIYNTCIICVLHFVPN GIKLRGHIGSELQRKAAGILSIEKDDNPEYSVVKALKVRDGSPLDVPMMLFGWDKA >gi|281304726|gb|ADEF01000058.1| GENE 2 1018 - 1803 425 261 aa, chain - ## HITS:1 COG:no KEGG:BT_0108 NR:ns ## KEGG: BT_0108 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 4 256 4 252 666 236 48.0 6e-61 MNLKEEILQRTNHGLEVFYFYMPIDFVPKRNFRNPLYNDRRASCNIYFDEKSQCYRMKDF GNEAYSGDCFWFAAAIMGLDVRTEFRKVLAMIVHDLGLNISIENRGASEQSRSCTKSTFS VGHKNAVSGTPENKRWFKIHEQPFNEEEKNFWLRYGITDRTLTQYSVKSLRSYEAISCQG KQFTLSSTKEEPIFCYIMGDFIKIYRPHSKLRFLYGGENLKDYVFGFEQLPTKGDILFIT GGEKDVLSLYAHGFNADMLQQ >gi|281304726|gb|ADEF01000058.1| GENE 3 1800 - 2189 276 129 aa, chain - ## HITS:1 COG:no KEGG:PG1534 NR:ns ## KEGG: PG1534 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 9 116 5 119 129 94 42.0 1e-18 MENNNSLFDEIRTLREELHQVVSFIVELKRDYSVLEEQIELGSSDVLRLLGISKAFLARW RDNNTIPYRYISSNHVVYPFKGVYIAIKSGRATFKGFRRMEALQRLNAYRDGIIKGYMGD NPQTLFEEL >gi|281304726|gb|ADEF01000058.1| GENE 4 2179 - 2652 278 157 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|261879769|ref|ZP_06006196.1| ## NR: gi|261879769|ref|ZP_06006196.1| hypothetical protein HMPREF0645_1211 [Prevotella bergensis DSM 17361] # 1 157 1 157 157 298 98.0 1e-79 MARKKECKSNKQGRIFIVKPTIDMMLSTCINVKLVANLGGFEYSNFVKTCKLGKDIRLSS LERCATAFGRDTLVIHLPAGLVESITNSQVHHSGLFHTIEEAELKIVLREILKIKKSQFL PYLELFFSVLEESNDCTEDLLQRLIKVLQNTIDENGK Prediction of potential genes in microbial genomes Time: Sat May 28 07:42:11 2011 Seq name: gi|281304701|gb|ADEF01000059.1| Prevotella timonensis CRIS 5C-B1 contig00014, whole genome shotgun sequence Length of sequence - 25907 bp Number of predicted genes - 31, with homology - 26 Number of transcription units - 12, operones - 6 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 30 - 434 163 ## gi|300726590|ref|ZP_07060031.1| hypothetical protein PBR_0191 - Prom 508 - 567 4.4 2 2 Op 1 . - CDS 588 - 1250 315 ## COG1226 Kef-type K+ transport systems, predicted NAD-binding component 3 2 Op 2 . - CDS 1166 - 1321 75 ## gi|300726589|ref|ZP_07060030.1| ion transporter - Prom 1420 - 1479 5.7 4 3 Op 1 . - CDS 1524 - 1670 59 ## 5 3 Op 2 . - CDS 1672 - 3375 714 ## COG2192 Predicted carbamoyl transferase, NodU family 6 3 Op 3 . - CDS 3375 - 4472 224 ## COG1696 Predicted membrane protein involved in D-alanine export - Prom 4495 - 4554 1.6 + Prom 4250 - 4309 2.4 7 4 Tu 1 . + CDS 4432 - 4566 60 ## - Term 4488 - 4521 2.4 8 5 Op 1 . - CDS 4577 - 6532 1146 ## Tery_1675 hypothetical protein 9 5 Op 2 . - CDS 6558 - 7703 584 ## gi|282881408|ref|ZP_06290084.1| hypothetical protein HMPREF9019_0511 10 5 Op 3 . - CDS 7703 - 8497 450 ## PFLU3250 hypothetical protein 11 5 Op 4 . - CDS 8572 - 9981 669 ## COG0641 Arylsulfatase regulator (Fe-S oxidoreductase) 12 5 Op 5 . - CDS 9968 - 10255 288 ## gi|282881411|ref|ZP_06290087.1| hypothetical protein HMPREF9019_0514 13 5 Op 6 . - CDS 10259 - 10774 318 ## gi|218130612|ref|ZP_03459416.1| hypothetical protein BACEGG_02201 14 5 Op 7 . - CDS 10777 - 11679 505 ## gi|282881413|ref|ZP_06290089.1| conserved hypothetical protein 15 5 Op 8 . - CDS 11676 - 13118 958 ## gi|282881414|ref|ZP_06290090.1| hypothetical protein HMPREF9019_0517 16 5 Op 9 . - CDS 13121 - 14377 691 ## Fisuc_0133 hypothetical protein 17 5 Op 10 . - CDS 14394 - 15143 673 ## COG4245 Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain 18 5 Op 11 . - CDS 15155 - 16429 804 ## COG0515 Serine/threonine protein kinase 19 5 Op 12 . - CDS 16441 - 16803 327 ## Shel_03930 hypothetical protein - Prom 16924 - 16983 5.5 + Prom 16788 - 16847 4.6 20 6 Op 1 . + CDS 16964 - 17674 474 ## Ctha_0889 hypothetical protein 21 6 Op 2 . + CDS 17680 - 17799 83 ## 22 7 Tu 1 . - CDS 17842 - 18897 719 ## COG3039 Transposase and inactivated derivatives, IS5 family - Prom 19014 - 19073 5.5 + Prom 18790 - 18849 3.7 23 8 Tu 1 . + CDS 19049 - 19282 127 ## 24 9 Tu 1 . - CDS 19263 - 20111 691 ## COG1864 DNA/RNA endonuclease G, NUC1 - Prom 20165 - 20224 8.6 25 10 Op 1 1/0.000 - CDS 20342 - 21397 660 ## COG3039 Transposase and inactivated derivatives, IS5 family - Prom 21528 - 21587 5.0 - Term 21544 - 21578 3.5 26 10 Op 2 . - CDS 21589 - 22863 932 ## COG3550 Uncharacterized protein related to capsule biosynthesis enzymes 27 10 Op 3 . - CDS 22867 - 23184 259 ## BF1147 putative transcriptional regulator 28 10 Op 4 . - CDS 23263 - 23847 392 ## gi|282881425|ref|ZP_06290101.1| hypothetical protein HMPREF9019_0528 - Prom 23991 - 24050 5.0 29 11 Op 1 . - CDS 24080 - 24280 80 ## 30 11 Op 2 . - CDS 24284 - 24571 224 ## gi|282881426|ref|ZP_06290102.1| hypothetical protein HMPREF9019_0529 - Prom 24703 - 24762 4.7 31 12 Tu 1 . - CDS 24771 - 25901 538 ## PG0838 integrase Predicted protein(s) >gi|281304701|gb|ADEF01000059.1| GENE 1 30 - 434 163 134 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300726590|ref|ZP_07060031.1| ## NR: gi|300726590|ref|ZP_07060031.1| hypothetical protein PBR_0191 [Prevotella bryantii B14] # 65 113 1 49 49 92 93.0 7e-18 MEESVCTVIKFLGHERYIKDDNFLQEFSRICVEDDNLSLDSVNRNVTIYGTTFHINVNHH SQGFMLITSVQPDTKQMRIVRDAISKFHGEENFEEDYHYSWHLYTDSTKIGQNYPIIHLR RVRSEDGGTVIIVN >gi|281304701|gb|ADEF01000059.1| GENE 2 588 - 1250 315 220 aa, chain - ## HITS:1 COG:DR0830 KEGG:ns NR:ns ## COG: DR0830 COG1226 # Protein_GI_number: 15805856 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, predicted NAD-binding component # Organism: Deinococcus radiodurans # 22 219 66 252 280 98 37.0 1e-20 MVYGRRNRGEHLASDVYADLYRFKVTEMIATAIFVGDYILRWITADIRLKKGKKSFWLYP FTFMAVIDLLSILSVSSFLNPAFRMLRFVRLLRIIRVMKLAWYSKPIATFAKILYKERHI LMSVLIISLAYIFVTALVLFNVEPHVNPHTGEQTFNSFFDALYWATVTLTTVGYGDMCPV TDIGRFVSMLSSLFGVAIIALPSGVITASYLDELRDERKQ >gi|281304701|gb|ADEF01000059.1| GENE 3 1166 - 1321 75 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|300726589|ref|ZP_07060030.1| ## NR: gi|300726589|ref|ZP_07060030.1| ion transporter [Prevotella bryantii B14] # 1 49 1 49 244 82 87.0 1e-14 MTREQIEYIIERTEHSTKASVYYDWFMVGVIVVSILPLMFMQTYTGLRLRK >gi|281304701|gb|ADEF01000059.1| GENE 4 1524 - 1670 59 48 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MDLIKELFIYIYSQRKWWLAPIIILLLIVGLFVIFADSAIAPFIYTLF >gi|281304701|gb|ADEF01000059.1| GENE 5 1672 - 3375 714 567 aa, chain - ## HITS:1 COG:SMb20472 KEGG:ns NR:ns ## COG: SMb20472 COG2192 # Protein_GI_number: 16264202 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted carbamoyl transferase, NodU family # Organism: Sinorhizobium meliloti # 1 567 1 592 610 471 41.0 1e-132 MVILGITAYYHDSSAALIVNGRIIAGALEERFSRRKHDNRFPTLAIQFSLEYAGISLDDV NVIAFYEKPFRKFERILKESIIYAPRSYGRFLKSVPIWLKERLNMRKTIKQELKNIYGKV QADIRFVDHHLAHAANAYFLSPYQDAAILVLDAVGEESTTSIYNASDGEVTLIQKQVYPN SIGLLYSAFTYLLGFKVNSDEYKVMGLAPYGNKDSEETKCFTRIIKDNLVDVHEDGSIVL NTKYFSFMYSYKMVDEQKWERLFGIKRRNEREDITSSHKNLALAIQSITEDVVCKLALTA KKITGKSNLCVSGGCALNCAANGVILKSHLFANAYVPYAPDDSGCAIGAALACSPMVDKE INDSSFIGPGYDNDRMISAIENNGLPYLHLDDKQLCEEVSELLLERKVVGWFQGRMEFGP RALGNRSILADPRNANMKDKVNSKIKFREEFRPFAPVVLDKYAGEIMELHGMESEHMMFT YTMKQRGFDAITHEDMSARAQILHRNYNEKLYILLEAFKKKTGCPLLLNTSFNVMGEPIV CTPKDAIRTFQNSGLDALVIGNNLIMK >gi|281304701|gb|ADEF01000059.1| GENE 6 3375 - 4472 224 365 aa, chain - ## HITS:1 COG:PA3548 KEGG:ns NR:ns ## COG: PA3548 COG1696 # Protein_GI_number: 15598744 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Pseudomonas aeruginosa # 35 283 120 379 520 134 29.0 2e-31 MSSKLLEKNKSKNIIVTDILILVSAFFALKSSHSLILPLGYSVFAFSAISLVASQYRDYK DYTVLEILCYLFFFPKIFAGPIDRVEDFVELLRETKKPALNKLYHPIKMCIFACFYKYVI ADRIYYLCNEEYYGLNEICSILCYGVAFFFDFYAYSIFAIAFGKLLGIDLPENFDSPYQS KTFRDFWKRWNITLGTWLRDYIYIPLGGNRVAKSQWGVNILLVFIVSAIWHDSTAPFIFW GVIHAILLIAERHFSIKGNRYYGVVVFMISILLWQLFDVNSIEDFSLRLLRCIEYQPFDT TIVIGSIVSLGVLWFADRESIKAAIFQHRNTGRYILKEVPITSIILVLDILFANNPSINF FYMKF >gi|281304701|gb|ADEF01000059.1| GENE 7 4432 - 4566 60 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFLLLFFSKSFEDIAIITNITRNIKTYILMKQVKTATLASHITV >gi|281304701|gb|ADEF01000059.1| GENE 8 4577 - 6532 1146 651 aa, chain - ## HITS:1 COG:no KEGG:Tery_1675 NR:ns ## KEGG: Tery_1675 # Name: not_defined # Def: hypothetical protein # Organism: T.erythraeum # Pathway: not_defined # 108 381 59 350 355 65 24.0 5e-09 MNLLLVLLLLWNPIVLWLYYQSMVIAFLLPLLFVILGFTISKIRSLRLKVWAFNLAAIAS ILFHAEVIFTMVYADKDIPNLYELHGKYYFNKPYLDQQFNDPEFVTRYKTNCQGYRIDDL TSQDQKIEKCDWLFIGDSYTQGAQVEYNQLFSSLIYKDFPDKVIVNAGISGAGLYDELNY FKDKGKELLPKVVFLQIGAFNDFMNIKEHVSSLQDYIMEWSALYRYFEYNIANSDELPLG RWTEPFFPNKEDNIDNNIFFKQTSDYKESDKRAFKNCITEFKKEVEAVGGQLVLIFIPSK EQVSQELLKEVLDAYNIGKDEIDLTIPNKLCQSVANDLGMQLYDLTAEFCHSKTFPFFAH DEHMNVVGHQLIAERLVEEMSSISGKYEYQSEGNFHERYPTIHADGTMVYQSQTEHYYTI NRLNINNGNREELWRGVSELVHPMISSDGRYLVFTEGEQESLNTDVVLYDFLKNNQIAIN KKPTKGSIPCISKSATKIAFPCWTLDETIPQIAIYDIATEKQTQFKDGVECWRPLFSNDE CYIYYIQKETHDSHFIIKQYDVTTGEKSIVLKQPFDIWDIAVSPSGKYIAYAGNKDANWD LFIYDTKHKHSRQITHTIGDEWDPAFGVSDDELWFAGVFGFNDGIYHVRLK >gi|281304701|gb|ADEF01000059.1| GENE 9 6558 - 7703 584 381 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881408|ref|ZP_06290084.1| ## NR: gi|282881408|ref|ZP_06290084.1| hypothetical protein HMPREF9019_0511 [Prevotella timonensis CRIS 5C-B1] # 36 381 1 346 346 658 99.0 0 MGKIRIYSKQPKPIVSLSETYTVFSSYKSGRATLRLTPDGEYLFTVYGDIGESTAKRSST HKTTEQKLTNNMLKMYEEAQDAFNAIHKKSKLRLVSSYSVQQNVKPQGAYQWKTLDIKKP SDNEAKNLVVNEARNLNHNPKGSSVSESDFIKANLEKVKKERMDAWDEIQKLFNLIEKAQ ADRANASFKKVYDASVRAQQEIIDGASHIVDDAFHSFPNTLIVPFIIELDYKYNQAAKCI DVSIELTEAPSLKVPMKKATLKTTGKMSVRAKTQGDLQQDYANTCLSLMYYVACNVFNIT PNIQTCRISLYTARKANGICWMEFNRNRFSTLYLSSLDPLLDMMGWPNVANLKVLKTTSK LDSMEKTTFENQIKSQITSLT >gi|281304701|gb|ADEF01000059.1| GENE 10 7703 - 8497 450 264 aa, chain - ## HITS:1 COG:no KEGG:PFLU3250 NR:ns ## KEGG: PFLU3250 # Name: not_defined # Def: hypothetical protein # Organism: P.fluorescens_SBW25 # Pathway: not_defined # 1 252 135 385 411 220 43.0 4e-56 MCCQPPMNVDDIDQLYEENQLRIQNAPKDLPIIGVTGGEPTLLGNKLISLVKRIREQLPD TDIHILSNGRNFKDSDYTSALVEAGEGRIIFGIPLHSDFYRDHDIIAGANGAFEETITGL YNLASVGACIELRIVMNKLNYKRFLPLAEFIHKNLPFVAWIAYMGMEYTGYAIKNSKNIW IEPKEYVSHLLDAVKYLDEWRYNVCIYNIPLCLLPENFHEFAQQSISDWKNDYPDICLEC KKKEMCCGLFTTSIKPYEGLKAIQ >gi|281304701|gb|ADEF01000059.1| GENE 11 8572 - 9981 669 469 aa, chain - ## HITS:1 COG:STM3966 KEGG:ns NR:ns ## COG: STM3966 COG0641 # Protein_GI_number: 16767236 # Func_class: R General function prediction only # Function: Arylsulfatase regulator (Fe-S oxidoreductase) # Organism: Salmonella typhimurium LT2 # 99 449 33 391 447 68 23.0 3e-11 MISTENYSILPFNFIRIKNKEVLVNELGDMIVVPNGTACRLANKEEVDEELFKSLYANFF VTNNYFSPMMDVYAARLREKKSFLDNFTALHIFVLTLRCNQNCVYCQASSQDEVSKHCSM SFHTMDKAVELMFKSRSPFLTMEFQGGEPTLEPKLIRYGIERAEEINKTEKRKIDYVLCT NSINLTEEIMDICQTYHVLISTSLDGPEWLHNKNRGKKDSHEKVVAGITKARTLLGYDQV SALMTASEEGVLHPIEIVEEYERLGFNSIFLRALNPYGLASDNSDWDEYTDKFIDFYKKA LDHIIELNLNGRFFIEEFAAIILRKMLTPFCTGFVDLQSPAGIINSVLVYNYDGYVYASD ESRMLAEFYDYTFRLGSVDDKYEDIVYGQKARELGKIWCNETIAGCADCPIRAYCGADPV RNYSTQGDAYGFRPNSWLCRKNKAIIEYLIELIVTRHDEVMPIFKSWLV >gi|281304701|gb|ADEF01000059.1| GENE 12 9968 - 10255 288 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881411|ref|ZP_06290087.1| ## NR: gi|282881411|ref|ZP_06290087.1| hypothetical protein HMPREF9019_0514 [Prevotella timonensis CRIS 5C-B1] # 1 95 1 95 95 147 100.0 2e-34 MEIKIDRNIYSDSCISKVVYLLSDKCSIERTIESGFDILTIIQKTDDEFDIKGFWDKMND FKLREIINSETKDIKTILYAKAFGDFDNLDENDFD >gi|281304701|gb|ADEF01000059.1| GENE 13 10259 - 10774 318 171 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|218130612|ref|ZP_03459416.1| ## NR: gi|218130612|ref|ZP_03459416.1| hypothetical protein BACEGG_02201 [Bacteroides eggerthii DSM 20697] # 1 171 1 171 171 294 85.0 2e-78 MNKIASNIIKSLLVASVFSISGNDVEDTNDYVYSVGNENDEQSVTNKRKSVIKNVIKLNG NGKFTLIAGHRSHYSHRSHYSGRRSRCSSFRSPLELVLGDRTVSKGMYGADVDMLATILD SKGLYDKQNLSKIKGMACFDLRMEQCIKNLQAKYGMTVDGVCTRDVLSKIL >gi|281304701|gb|ADEF01000059.1| GENE 14 10777 - 11679 505 300 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881413|ref|ZP_06290089.1| ## NR: gi|282881413|ref|ZP_06290089.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 22 300 11 289 289 423 100.0 1e-117 MKNSAKNKIKALLLSAAAALLPTHAQAEEVTTFMPDLGNNDYFFGETNRSWGKVFKNVAK LDKNGDVKYIASHRSHMSHRSGGGGSGYGHRSHYSHYSSYGGGSSHYSSSSSSRRSSSSY SKPKPKTAGDYSIGDRTLKTGIHGSDVTSLTGYLATGLYINRSWIKEKEGYALYDATIAS AVKHFQKDAGLPQTGVADQTTINKLKSWDNSKTTVILGTRELSYSETSTDKGTDVTELVN LLTKAGFAPDPKKIVMTSDGRTEFTKDIATAVRFFQAYNNLSVTGRADEATIKALIAKAQ >gi|281304701|gb|ADEF01000059.1| GENE 15 11676 - 13118 958 480 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881414|ref|ZP_06290090.1| ## NR: gi|282881414|ref|ZP_06290090.1| hypothetical protein HMPREF9019_0517 [Prevotella timonensis CRIS 5C-B1] # 1 480 3 482 482 900 100.0 0 MDKKHQLHTGIKDIIQANGVEPIRNIQLANILADYSAYDEYPATKIVLKDVLTNGFGQKI YDAFNKSGKSSLAEIEKIKHDYSKTTKFKKDVVNYVFDSICYGLGLKTSVKEPSSNSFDP FKNESDNILDKLPGMLAELKKEYEEALKTLLVQPKDIIWDAAAYYPASAENQLYLIEGKI HVISNQLGINDNNWCKNLKEKTLNSHRQKKINSVKEVLDSKKIDFTNLLNKALVKPSSSY ISKSGHYASDKLSDIEKLESDIKGLYGEMGIKYDDWCEKEKSRILSPYVVSDSNRIRQML LKIAMPAAMFCGVGYYGGTYATSTDDINAYEQRMETADGYLANGDYGKAIAGFMQASNQY DGSYRISSYKDGAMSQADACFESMQNKVASLIEEKQYGEVLSLMKSIPAEYLSANQGKSD WIEKTKIDLQNTVAEEVDQLADLISNNGGHLTEDGKKYLDQLLAVSPDNYWLNLIKTKEK >gi|281304701|gb|ADEF01000059.1| GENE 16 13121 - 14377 691 418 aa, chain - ## HITS:1 COG:no KEGG:Fisuc_0133 NR:ns ## KEGG: Fisuc_0133 # Name: not_defined # Def: hypothetical protein # Organism: F.succinogenes # Pathway: not_defined # 10 290 13 321 325 173 32.0 1e-41 MDKLVHFCQGESHKATGKVCQDYAMCSTDNGVAVAVLSDGHGGNRYFRSDVGSKTIVECT FKRVKEFVENIDFSIFEGKAFTAVSALTIERKEENLRKNSKADDQLNQLFKSIIFGWRTA VEKHAEENPFTEEELKLITDPQDPHSIDKTYGCTLMCYVRTPKYWFAFHLGDGKCFSFNG DGNWSEPIPWDERCFLNKTTSICDTDALSEFRYCYQGNGDFPVAVFLASDGLDDSFGESF NQANFYIQILKLIVNTSNKDAQKEIEETLPQLSKIGSQDDMSVACLYDEKVLDSIIPELI LWQRSNIEKQIDALNEKILVAKAKMSKYSPLKFYTKKELIEAQYAQTDIERLFTSKRELA SKYNRFTSELPSTSSHADYDDEIGLYEYKEEEKRLTLTADQIKKRLRVLNHPMYKFNI >gi|281304701|gb|ADEF01000059.1| GENE 17 14394 - 15143 673 249 aa, chain - ## HITS:1 COG:YPO0594 KEGG:ns NR:ns ## COG: YPO0594 COG4245 # Protein_GI_number: 16120923 # Func_class: R General function prediction only # Function: Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain # Organism: Yersinia pestis # 13 204 2 194 327 64 29.0 2e-10 MGLLDDVVSVPRRTMTLFFVIDTSGSMIGNKIGAVNDAVENVLPMLDEISAFNPDAEIKV VALEFSSGCSWLYDEPKLASEFVWQDVTASGLTSLGAACLELNSKLSRSGFMQTPSGSFA PAIILLSDGGPTDDFHGGLSKLKANNWFKNAIKIAIAIGDDADKDVLTQFTGTNEAVFTV HNIEALKQIIRVVAVTSSQIGSKSSTAGDTTKQEQVIKDVTEAAKDINGAQSEAAPAPAN SADNYDDWD >gi|281304701|gb|ADEF01000059.1| GENE 18 15155 - 16429 804 424 aa, chain - ## HITS:1 COG:YPO0592 KEGG:ns NR:ns ## COG: YPO0592 COG0515 # Protein_GI_number: 16120921 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Yersinia pestis # 130 315 162 366 499 66 24.0 8e-11 MADLAKGTRISLTDGGCVTIIKELGRGGQGIVYLVDLNGEQKALKWYLTAPDEKFYRNLE KNIMNGAPSDAFLWPEHLTNRQLGSFGYVMQLRPKNYYEFGNYLLAKVSFKSFTAMLAAA MKICDGFMMLHRCGYSYQDLNDGNFFIDPNNGDVLICDNDNVMPQGEKSGIMGKARYMAP EIVAGGIPDKRSDRFSLSVILFMLFYANHPFEGERVVACPCMTESFERKFYGSEAIFIYD PTNNANRPVRGIHQNIIRRWPVFPSILRETFEREFSQEYLQNPEKRMIEQNWEKIISQVR DQLVICPTCKEETFVETNGAIGKCINRGCSIDISKRLLINNRSLPLTDKTEIFIDNDNTP DAVVSKDANGVLLIKNISPDKWTVETPSDKVKTVESQDIMPVKEGLKITFKIREIPYRGE ITNI >gi|281304701|gb|ADEF01000059.1| GENE 19 16441 - 16803 327 120 aa, chain - ## HITS:1 COG:no KEGG:Shel_03930 NR:ns ## KEGG: Shel_03930 # Name: not_defined # Def: hypothetical protein # Organism: S.heliotrinireducens # Pathway: not_defined # 4 119 1 117 118 83 39.0 2e-15 MTTLSNEAFAVMAACERTKQPFGITVDKICSGQYKFVWAFKIDKEKAQREGYDKTNVKGN VTLDAEYPGCPYCGEKRHIICSSCNKFFCYHGQEYVTCPNCGASGNVVSVEQVDLKGGGY >gi|281304701|gb|ADEF01000059.1| GENE 20 16964 - 17674 474 236 aa, chain + ## HITS:1 COG:no KEGG:Ctha_0889 NR:ns ## KEGG: Ctha_0889 # Name: not_defined # Def: hypothetical protein # Organism: C.thalassium # Pathway: not_defined # 3 83 1 81 249 87 50.0 5e-16 MGLYWRRSTKILPGVRINWSKSGPSISMGPRGAKVNIGKRGTYVSGGIPGTGLYYRQKVG GGSKSSGSTNGGTYPTSTNTQSTFGFSKQGCLVSIVAFIILSLLLSSNFITAVLVAVIAG VCRFFMSRKDATTPLSNQNATQPTQPTPAPTINTPTPSQPTPSSDDIDVKVAIAEVEHLI AEIDNTTDKVKLPSIYRKLMSIVYKLEKIYGVEIQGIPIEIAKQRILENYRKKLAS >gi|281304701|gb|ADEF01000059.1| GENE 21 17680 - 17799 83 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MEEGAGAIVLIIMRPLQNLTPFSIILVFEHYWLTRSQYF >gi|281304701|gb|ADEF01000059.1| GENE 22 17842 - 18897 719 351 aa, chain - ## HITS:1 COG:NMA1199 KEGG:ns NR:ns ## COG: NMA1199 COG3039 # Protein_GI_number: 15794143 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Neisseria meningitidis Z2491 # 25 340 22 324 335 206 38.0 5e-53 MKQCPSSPSFADLIVGHRKVKQTFFFQIDQIIDWNPIRGLIEIAYTKGNRPTGRPSYDSL VLFKTELLRTWYGLSDGEVEEQVNDRLSFSRFVGLGLDDCAPDSATVCRFRNILVEADLY DNVLQEINRQLELAGVLVKRGAIVDASITDSPRRPRGRKEYEVVEDRNEESGMDVAENAM VKEIVKPNVDGEARWVKKMGKLHFGYKRHSVTDENGLVIAEETTPANESDIKHLEKPLEK AKLPQGTPVYADKGYDSTANKDVLKRMKLKSRIMHKGVRGRKLTEREQRVNVAISKTRYK VERTFGSIHRWFHGGIARYVGLAKTHAQHIMEAIAYNLYRTPGIIVSNSLK >gi|281304701|gb|ADEF01000059.1| GENE 23 19049 - 19282 127 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVSKIYLTHIVPVVTALVSLVCVLAIVFFALFEQWLYVALASTALVLDFCLYWILTKRID RNFCIDNEPDKPTTLKD >gi|281304701|gb|ADEF01000059.1| GENE 24 19263 - 20111 691 282 aa, chain - ## HITS:1 COG:SPAC17C9.08 KEGG:ns NR:ns ## COG: SPAC17C9.08 COG1864 # Protein_GI_number: 19115510 # Func_class: F Nucleotide transport and metabolism # Function: DNA/RNA endonuclease G, NUC1 # Organism: Schizosaccharomyces pombe # 78 266 80 289 335 119 34.0 9e-27 MMRFLLTTIMSFSLFGCQPGAIDKMIIGMFANAQETSATEQPISTKKANENIGNNQQVYQ DLEIPAYSDNDIILKRIAYTTSYDKANKIPKWVAWHLTSGHTSGDQRRLSNFIVDDEVPA PRAELVDYKGSGYDRGHMCPAGDNKWGFEPMKESFYLTNICPQDHNLNCGDWNELEIACR DWANKYGSIYIVAGPVLYKGEHETIGPNKVTVPEALFKVVLCMNGTPKAIGFIYKNHPCN NPQSSYVNSIDQIERITGLDFFPNLPDEIEEKVEATANLSEW >gi|281304701|gb|ADEF01000059.1| GENE 25 20342 - 21397 660 351 aa, chain - ## HITS:1 COG:NMA1199 KEGG:ns NR:ns ## COG: NMA1199 COG3039 # Protein_GI_number: 15794143 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Neisseria meningitidis Z2491 # 25 340 22 324 335 202 38.0 7e-52 MKQRPSSPSFADLIVGHRKVKQTFFFQIDQIIDWNPIRGLIEIAYTKGNRPTGRPSYDSL VLFKTELLRTWYGLSDGEVEEQVNDRLSFSRFVGLGLDDCAPDSTTVCRFRNILVEADLY DNVLQEINRQLELSGVLVKRGAIVDASITDSLRRPRGRKEYEVVEDRNEESGRDVAENAM VKEIVKPNVDGEARWVKKMGKLHFGYKRHSVTDENDLVIAEETTPANESDIKHLEKPLEK AKLPQGTPVYADKGYDSTANKDVLKRMKLKSRIMHKGVRGRKLTEREQRVNVAISKTRYK VERTFGSIHRWFHGGIARYVGLAKTHAQHIMEAIAYNLYRTPGIIVSNSLK >gi|281304701|gb|ADEF01000059.1| GENE 26 21589 - 22863 932 424 aa, chain - ## HITS:1 COG:CC2770 KEGG:ns NR:ns ## COG: CC2770 COG3550 # Protein_GI_number: 16127002 # Func_class: R General function prediction only # Function: Uncharacterized protein related to capsule biosynthesis enzymes # Organism: Caulobacter vibrioides # 70 337 68 350 435 94 30.0 4e-19 MEKLDVIASFDWMDKEEKVGSLGHEYLRGSDVFSFEFDKTWLKRYPKIDFGCDLRPYTGV QYSQGNHIFGCFSDTLPDRWGRRLIDLRASLETEGKASHTLSDWDYLKGVEDEMRMGGFR FQDPTDGSFISSTPSYSVPPAIHIDELLQAAKEIEKSEYKHLEPEKKWVQRLFQPGSSMG GARPKACVQSGGQLYLAKFPSINDDINVSRWEHFAHLMAKECGITVAETQVIKAGTGQDI LLSKRFDRTEDNKRIHMASSLTVLGLTDGDGQRNSKGYLDIVDFIISSGGNHIEANLEEL YKRVAFNICIGNTDDHFRNHAFLLGKDGWELSPAYDMNPTNSMFQALLIDANTNESSLNH LYNAHELYMLDETTARGIIMDVTRNMKYWESIAEDIGLPRREITYFTDRFEQGMEFQYGA GLRR >gi|281304701|gb|ADEF01000059.1| GENE 27 22867 - 23184 259 105 aa, chain - ## HITS:1 COG:no KEGG:BF1147 NR:ns ## KEGG: BF1147 # Name: not_defined # Def: putative transcriptional regulator # Organism: B.fragilis # Pathway: not_defined # 1 105 1 105 106 108 58.0 5e-23 MAKFTKANWMTRALQEKLNVVGEQFRLARLRRDLTMDQVAQRAQCTRLTLSRLEKGEPTV SIGVVMRVLNALQLEDDILHLAKDDELGHMIQDLGIKNKKRASKR >gi|281304701|gb|ADEF01000059.1| GENE 28 23263 - 23847 392 194 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881425|ref|ZP_06290101.1| ## NR: gi|282881425|ref|ZP_06290101.1| hypothetical protein HMPREF9019_0528 [Prevotella timonensis CRIS 5C-B1] # 1 194 1 194 194 363 100.0 3e-99 MRKENKFLVTAWERIAEIVVIFDDDKNPYIYSYIDGDEFYRFEENEKIFDNKEQAEEYVR ENIIPFDKNKVKEYLTKRYEVNSISEMEDILPDSIIKKCSHRFINICDLGWSQCDLLRNA LKGIFCINAITFRKEEVAYIKHGEDDWIEITLKDGIKVTPRNEDENLIIRWCFGGNSSGV YYTNIKKPVETEEN >gi|281304701|gb|ADEF01000059.1| GENE 29 24080 - 24280 80 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKKFFKSINLVEWLQIRKKRNYQLQTTKCRINSWQQFSDTMSLLAIVAGVITIITKRINK KSELEI >gi|281304701|gb|ADEF01000059.1| GENE 30 24284 - 24571 224 95 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881426|ref|ZP_06290102.1| ## NR: gi|282881426|ref|ZP_06290102.1| hypothetical protein HMPREF9019_0529 [Prevotella timonensis CRIS 5C-B1] # 1 95 1 95 95 192 100.0 7e-48 MELSDSFLETPLAELSVKDFVSLLKEYQGSYETSSEQLFDEDVWVSGYKNLAKYLHCSVP TVCRLVKTGKINPAIRKIGATYWFNKNMIRDLMKV >gi|281304701|gb|ADEF01000059.1| GENE 31 24771 - 25901 538 376 aa, chain - ## HITS:1 COG:no KEGG:PG0838 NR:ns ## KEGG: PG0838 # Name: not_defined # Def: integrase # Organism: P.gingivalis # Pathway: not_defined # 2 376 70 431 432 390 50.0 1e-107 MATDLNDQLSQMLTDMIAVFREYELLNIVPTVPELRNSFTKQRSSHIQTAHQSKKKDSTL TVQQVDKKRNGTKDKGFWKYFDEFVKVNGKLNDWTSATYEKFAALRNHLFTFDNKLTFDK FDEDGIANFIDYLGKKGMKNSTINKQLGFLRWFLRWCYEKGYHTNHTFEYYKPKLKNTTK RVVFLTAEELNTLETFQIPDKYVALGPVRDVFLFTCYTGLRYSDACNLTWDDIHNGKIEI VTVKTSDRLLIEINSKAQAILDKYTEIHFPNMKVLPVVSNQKMNKHLHTLCKLAGIDESI KSTHYEGNKRVDEVHPKYELIGTHCGRRTFICTALAKGIPPSVVMKWTGHSDYKAMKPYI DIADEVKSEYMKQFDQ Prediction of potential genes in microbial genomes Time: Sat May 28 07:44:19 2011 Seq name: gi|281304699|gb|ADEF01000060.1| Prevotella timonensis CRIS 5C-B1 contig00006, whole genome shotgun sequence Length of sequence - 1391 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 20 - 79 8.0 1 1 Tu 1 . + CDS 127 - 1362 563 ## COG3385 FOG: Transposase and inactivated derivatives Predicted protein(s) >gi|281304699|gb|ADEF01000060.1| GENE 1 127 - 1362 563 411 aa, chain + ## HITS:1 COG:DR0870 KEGG:ns NR:ns ## COG: DR0870 COG3385 # Protein_GI_number: 15805896 # Func_class: L Replication, recombination and repair # Function: FOG: Transposase and inactivated derivatives # Organism: Deinococcus radiodurans # 25 384 18 389 416 143 26.0 7e-34 MMISEPLSQYEEILKDAIRTSMKESGAKLAKTFQTLLIEILTLYMILPRKINFTQMARYG KHGEQTYRQNFNRKKKDCIDWLLLNLSLARRVLDMDGLLAIAIDPCYISKAGKKTPHIGR FWSGCAGAVKHGLEIMGIGLLDVANNKCMMLRAHQTIGNSALKMRNKTLVEYYISVMKRY SKKLLSITDIVVADAFFSTSTFEKGISELGFYLVSRFRDNACLHYIPKREKRRGRPRVKG DKIDLANLNLSCMEELHIDGLDGKVYTLEAYAKALKKRVRLVIWRMPGGKCKLFFSTKLS MTGEEVLKTYRTRFQIEFCYRDSKQFTGLMDCQARHKRQLDFAFNASFASLNAAKVFMKD NGMDNSMEKVKSLMFNANYTKLIFDMSRCRPNRTLISKIVKELIGWQPKAA Prediction of potential genes in microbial genomes Time: Sat May 28 07:44:35 2011 Seq name: gi|281304656|gb|ADEF01000061.1| Prevotella timonensis CRIS 5C-B1 contig00003, whole genome shotgun sequence Length of sequence - 57883 bp Number of predicted genes - 46, with homology - 42 Number of transcription units - 20, operones - 12 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 275 - 334 7.3 1 1 Op 1 30/0.000 + CDS 445 - 795 197 ## PROTEIN SUPPORTED gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A 2 1 Op 2 9/0.000 + CDS 786 - 1481 683 ## COG0377 NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases 3 1 Op 3 8/0.000 + CDS 1498 - 3069 1703 ## COG0649 NADH:ubiquinone oxidoreductase 49 kD subunit 7 + Prom 3071 - 3130 2.1 4 1 Op 4 31/0.000 + CDS 3150 - 4235 1191 ## COG1005 NADH:ubiquinone oxidoreductase subunit 1 (chain H) 5 1 Op 5 28/0.000 + CDS 4265 - 4798 356 ## COG1143 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) 6 1 Op 6 30/0.000 + CDS 4813 - 5334 411 ## COG0839 NADH:ubiquinone oxidoreductase subunit 6 (chain J) 7 1 Op 7 26/0.000 + CDS 5331 - 5639 238 ## COG0713 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) 8 1 Op 8 30/0.000 + CDS 5644 - 7611 1476 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 9 1 Op 9 22/0.000 + CDS 7650 - 9134 1163 ## COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M) 10 1 Op 10 . + CDS 9148 - 10626 1179 ## COG1007 NADH:ubiquinone oxidoreductase subunit 2 (chain N) + Term 10646 - 10704 13.1 - Term 10763 - 10817 16.1 11 2 Op 1 . - CDS 10849 - 13692 2645 ## COG0178 Excinuclease ATPase subunit 12 2 Op 2 . - CDS 13744 - 14478 495 ## PRU_1452 hypothetical protein - Prom 14550 - 14609 4.8 + Prom 14422 - 14481 6.0 13 3 Op 1 . + CDS 14584 - 15999 1098 ## PRU_1451 LysM domain-containing protein 14 3 Op 2 . + CDS 16035 - 16775 590 ## PRU_1450 hypothetical protein 15 3 Op 3 . + CDS 16786 - 18312 1624 ## COG3104 Dipeptide/tripeptide permease + Term 18354 - 18405 18.2 - Term 18347 - 18387 11.5 16 4 Op 1 . - CDS 18411 - 18647 160 ## - Prom 18667 - 18726 2.9 17 4 Op 2 . - CDS 18858 - 21059 2354 ## COG3808 Inorganic pyrophosphatase - Prom 21090 - 21149 5.2 18 5 Tu 1 . - CDS 21199 - 21399 93 ## - Prom 21636 - 21695 6.7 + Prom 21795 - 21854 7.4 19 6 Op 1 . + CDS 21978 - 23177 1011 ## PRU_1072 hypothetical protein 20 6 Op 2 . + CDS 23187 - 24503 1029 ## COG0513 Superfamily II DNA and RNA helicases + Prom 24517 - 24576 7.2 21 7 Op 1 6/0.000 + CDS 24613 - 25680 1117 ## COG1932 Phosphoserine aminotransferase + Term 25802 - 25844 4.2 + Prom 25770 - 25829 2.5 22 7 Op 2 2/0.000 + CDS 25862 - 26779 1073 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 23 7 Op 3 . + CDS 26785 - 28032 1203 ## COG4198 Uncharacterized conserved protein 24 7 Op 4 . + CDS 28065 - 28619 459 ## COG1739 Uncharacterized conserved protein + Term 28727 - 28765 -0.4 25 8 Tu 1 . - CDS 28710 - 28919 69 ## - Prom 29020 - 29079 4.7 + Prom 28821 - 28880 6.8 26 9 Op 1 3/0.000 + CDS 29030 - 29980 758 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 27 9 Op 2 . + CDS 29996 - 31306 1161 ## PROTEIN SUPPORTED gi|229254937|ref|ZP_04378866.1| SSU ribosomal protein S12P methylthiotransferase 28 9 Op 3 . + CDS 31322 - 31609 272 ## PRU_0753 HU family DNA-binding protein 29 9 Op 4 . + CDS 31606 - 32979 1111 ## BDI_0944 putative integration host factor IHF alpha subunit + Term 33033 - 33087 0.8 - Term 33289 - 33338 11.1 30 10 Op 1 . - CDS 33350 - 34924 1143 ## COG1530 Ribonucleases G and E - Prom 34944 - 35003 3.8 31 10 Op 2 . - CDS 35031 - 35120 80 ## - Prom 35142 - 35201 6.0 32 11 Tu 1 . - CDS 35238 - 35522 254 ## COG0776 Bacterial nucleoid DNA-binding protein - Prom 35614 - 35673 4.5 + Prom 36076 - 36135 8.6 33 12 Op 1 . + CDS 36377 - 37465 751 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair + Term 37599 - 37635 -1.0 + Prom 37635 - 37694 6.4 34 12 Op 2 . + CDS 37723 - 39192 1540 ## COG0469 Pyruvate kinase + Term 39312 - 39365 1.5 + Prom 39519 - 39578 3.3 35 13 Op 1 . + CDS 39607 - 40974 714 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 36 13 Op 2 . + CDS 40971 - 41990 613 ## COG1216 Predicted glycosyltransferases + Term 42140 - 42200 -0.6 + Prom 42058 - 42117 8.7 37 14 Tu 1 . + CDS 42231 - 43001 561 ## PRU_0632 putative lipoprotein + Prom 43005 - 43064 5.1 38 15 Op 1 . + CDS 43244 - 43942 709 ## COG0290 Translation initiation factor 3 (IF-3) 39 15 Op 2 . + CDS 44018 - 44215 239 ## PROTEIN SUPPORTED gi|153808045|ref|ZP_01960713.1| hypothetical protein BACCAC_02331 40 15 Op 3 . + CDS 44254 - 44598 521 ## PROTEIN SUPPORTED gi|53712979|ref|YP_098971.1| 50S ribosomal protein L20 + Term 44625 - 44678 14.2 - Term 44612 - 44664 10.2 41 16 Tu 1 . - CDS 44704 - 46164 1101 ## COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain - Prom 46338 - 46397 8.7 - Term 46346 - 46383 8.0 42 17 Op 1 . - CDS 46457 - 50137 3828 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit - Prom 50175 - 50234 1.9 43 17 Op 2 . - CDS 50238 - 51425 806 ## COG1373 Predicted ATPase (AAA+ superfamily) - Prom 51472 - 51531 3.7 + Prom 51471 - 51530 8.3 44 18 Tu 1 . + CDS 51560 - 52666 692 ## PRU_1233 hypothetical protein - Term 53343 - 53386 2.9 45 19 Tu 1 . - CDS 53391 - 56522 2068 ## PRU_1227 putative thiol protease/hemagglutinin PrtT 46 20 Tu 1 . - CDS 56640 - 57848 1056 ## PG0495 hypothetical protein Predicted protein(s) >gi|281304656|gb|ADEF01000061.1| GENE 1 445 - 795 197 116 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|154175415|ref|YP_001407462.1| NADH dehydrogenase subunit A [Campylobacter curvus 525.92] # 6 116 14 126 129 80 34 2e-14 MNFTLFVTVLLTAVTLVVAAYVIAKLIGPRSYNAVKGEPYESGIPTRGSSWLPMHVGYYL FAILFLMFDIETVLLYPWAVVVRDFGAMALVSIGFFLMVLVLGLAYAWRKGALEWK >gi|281304656|gb|ADEF01000061.1| GENE 2 786 - 1481 683 231 aa, chain + ## HITS:1 COG:Ta0969m KEGG:ns NR:ns ## COG: Ta0969m COG0377 # Protein_GI_number: 16082574 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases # Organism: Thermoplasma acidophilum # 28 179 3 154 157 198 56.0 7e-51 MEIKKPYIKSIPYGEFKDNESLERIVDELHEGGVNVVTGSLDQLINWGRANSLWSLTFAT SCCGIEFMAVGCARYDFARFGFEVTRNSPRQADLIMCAGTITNKMAPAFRRLYDEMAEPK YVIAVGGCAISGGPFKSSYHVVRGIDEIVPVDVFIPGCPPRPEAIMYGMMQLQRKIKVEK FFGGVNHKQEAHHHGLSNAEVYQQKLKENKPIVVTHVPEDFHPQEELEHQH >gi|281304656|gb|ADEF01000061.1| GENE 3 1498 - 3069 1703 523 aa, chain + ## HITS:1 COG:SMa1529 KEGG:ns NR:ns ## COG: SMa1529 COG0649 # Protein_GI_number: 16263284 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase 49 kD subunit 7 # Organism: Sinorhizobium meliloti # 164 523 19 404 404 276 35.0 6e-74 MKLENIEIAFSNLAQEMSKLKNDKHFDYLVTIVGEDFGEEGLGCIYILENTQTHERTSVK AIAQQIGEEYVLDTVSNLWKAADILEREVYDFLGIKFLGHKDMRRLYLRNDFKGYPLRKN FDVSPENNQYTLEEDVELDYTFQYSLDKNGNLVETRVPLFTDNDFVINIGPQHPSTHGVL RLQSVLDGETVKHIYPHLGYIHRGMEKMCEAYTYPQTLALTDRMDYLSAMMNRHALVGVI EEAMEIELTERIQYIRTIMDELQRIDSHLLYLGCCAQDLGALTAFLYSMRDREHVLNIME ETTGGRLIQNYYRIGGCQDDIDPNFVENTKKLCAYLKPMLQEYLDVFGDNVIMQQRFKGI APMNLENIISYGVTGASGRASGWKNDVRKYHPYAMYDKVEFEEVLNEHCDSFGRYLNRIE EIKQSIRIIEQLIDNIPAGDFYVKQKPIIKVPEGQWYFSCEGSRGEIGVYLDSKGDKMPY RLKFRPMGLNHVAAMDEMLRGQKIADLVTAGAALDFVIPDIDR >gi|281304656|gb|ADEF01000061.1| GENE 4 3150 - 4235 1191 361 aa, chain + ## HITS:1 COG:RSc2055 KEGG:ns NR:ns ## COG: RSc2055 COG1005 # Protein_GI_number: 17546774 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 1 (chain H) # Organism: Ralstonia solanacearum # 25 353 16 344 354 224 40.0 2e-58 MFDFSIVTTWFDTLLRQTLGLNDFWTIFIECVVVGVAILTAYALLAIVLIFMERKVCAYF QCRLGPMRVGFWGTLQVFADVFKMLIKEIFAVDKADKFLYYIAPFFVVIASVGTFSFLPW NKGAHILDFNVGIFLVSAISSIGVLGVFLAGWGSNNKYSVLSAMRGAVQMISYEMTLGLT LIAAVALTGTMQMSGIVEAQTGPWNWLIIKGHLPAIIAFLLFLVAGNAEANRGPFDLAEA ESELTAGYHTEYSGMGFGFYYLAEYLNLFVIAGLATAVFLGGWAPFNIGVEGFDAVMNYI PGIVWFLGKTFVVVWLLMWIRWTFPRLRIDQILTLEWKYLMPLALVNLILMTICVAFGIH G >gi|281304656|gb|ADEF01000061.1| GENE 5 4265 - 4798 356 177 aa, chain + ## HITS:1 COG:SMa1519 KEGG:ns NR:ns ## COG: SMa1519 COG1143 # Protein_GI_number: 16263279 # Func_class: C Energy production and conversion # Function: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) # Organism: Sinorhizobium meliloti # 12 175 14 166 188 76 28.0 3e-14 MENKQSYFSGIWYAIKSLVTGLRVTLKEYFTPKSTEQYPENRKTTLHVAQRHRGRLVFKR NEDGTHNCVACTMCEKACPNETILIKSEMVVNEETGKKKKQLVDYQYKLGDCMFCQLCVN SCNFNAIEFTNDFENSVFERDSLTMHLDKEVYQGGSLPGLIDGGAPLTIGQFNTKTK >gi|281304656|gb|ADEF01000061.1| GENE 6 4813 - 5334 411 173 aa, chain + ## HITS:1 COG:alr0225 KEGG:ns NR:ns ## COG: alr0225 COG0839 # Protein_GI_number: 17227721 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 6 (chain J) # Organism: Nostoc sp. PCC 7120 # 4 170 9 169 202 69 34.0 3e-12 MANLIMFCILAVVILGSAIMCVLTKRIMRAATFLIFVLFGVAGIYFLLGYTYLGAAQIAI YAGGITILYIFAIQLVSKRTLQGLVEHLKGSRVIQGALLSLIGLATVLGVLVKNQFIHQA TQVADAEVPMNVIGQALVGSEKYQYVLPFELISVFLLACIIGGLLIARKEDDK >gi|281304656|gb|ADEF01000061.1| GENE 7 5331 - 5639 238 102 aa, chain + ## HITS:1 COG:VNG0643G KEGG:ns NR:ns ## COG: VNG0643G COG0713 # Protein_GI_number: 15789840 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) # Organism: Halobacterium sp. NRC-1 # 1 101 1 99 100 70 45.0 5e-13 MIPVECLIGLSALLFFIGVFGFVTRRNLLAMLISVELVLNSADINFAVFNRILFPEQMEG FFFTLFSIGISAAETAVAIAIIINVYRNFGSDQVNSIENMKL >gi|281304656|gb|ADEF01000061.1| GENE 8 5644 - 7611 1476 655 aa, chain + ## HITS:1 COG:alr3956 KEGG:ns NR:ns ## COG: alr3956 COG1009 # Protein_GI_number: 17231448 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Nostoc sp. PCC 7120 # 3 651 5 693 696 349 35.0 1e-95 MDYSYVYLILLLPALSFLILGLLGMKMSHKVAGLIGTVVLGTVFCLSCYTAYEYFIGVGR GVDGLYPTITPFNITWLKFTELLTFNIGFRLTPISVMMLVVISTVSFMVHIYSFGYMHGE KGFQRYYAFLSLFTMSMLGLVVATNIFQMYLFWELVGVSSYLLIGFYYPMHTAVAASKKA FIVTRFADLFFLIGILFYSFYVGTFNYDLTATPELATHAAHAAWVMPLALFLMFIGGAGK SAMFPLHIWLPDAMEGPTPVSALIHAATMVVAGVYLVASMFPLFVEYAPEQLHWIAYIAA FTAFYAATVACAQSDIKRVLAFSTISQIGFMLVALGVCLPDPATGAVAMTEEYADVQGLG YMASMFHLFTHAMFKACLFLGAGCVIHAVHSNEKYYMGGLRKYMPITHITFLISCLAISG IPPFSGFYSKDEILVACYNFHPVMGMVMSGIAMMTAFYMFRLYYVIFWGKSYYESHQGEP DVHKPHEAPAVMTFPLIFLSLITCTVFLWGTRAGQLVSANGIGFNTHTNWSVAITSTVLA LLAIGLATFMYKGEKTPVADKLATTFPTLHRAAYKRFYMDEVWQFVTHKIIFRCVSRPIA WFDRHVIDGFFNFLAWGTQEAGESIRPWQSGDVRQYAIWFLTGSVALTLALICLL >gi|281304656|gb|ADEF01000061.1| GENE 9 7650 - 9134 1163 494 aa, chain + ## HITS:1 COG:slr1291 KEGG:ns NR:ns ## COG: slr1291 COG1008 # Protein_GI_number: 16329430 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 4 (chain M) # Organism: Synechocystis # 69 438 71 442 559 253 36.0 5e-67 MSILTLFVVIPVLMLFGLWLARNIRQVRGVMVAGSTALLALSVWLTIAFIQMRQAGNTEA MLFMYSTPWFKPLNIAYTVGVDGISVVMLLLSSIIVFTGTFASWQLKPMTKEYFLWFTLL SIGVFGFFISIDLFTMFMFYEVALIPMYLLIGVWGSGPKEYAAMKLTLMLMGGSALLIIG ILGIYFYSGATTMNVLEIAALHNIPVDVQKIFFPLIFIGFGVLGALFPFHTWSPDGHASA PTAVSMLHAGVLMKLGGYGCFRIAMFLLPEAAQELAWIFLILTTISVVYGALSACVQTDL KYINAYSSVSHCGLVLFALLMMTKTACTGAILQMLSHGLMTALFFALIGMIYGRTHTRDV RQLGGLMKIMPFLGVGYVVAGLANLGLPGFSGFVAEMTIFVGSFANNDTFHRTATIIACT SIVVTAVYILRVVGKILYQKVANPHFEQLTDATWDERVAVMCLIFCVAGLGIAPLWASNV INDAVGPILLNIIH >gi|281304656|gb|ADEF01000061.1| GENE 10 9148 - 10626 1179 492 aa, chain + ## HITS:1 COG:BMEI1145 KEGG:ns NR:ns ## COG: BMEI1145 COG1007 # Protein_GI_number: 17987428 # Func_class: C Energy production and conversion # Function: NADH:ubiquinone oxidoreductase subunit 2 (chain N) # Organism: Brucella melitensis # 69 444 63 430 478 213 36.0 1e-54 MNYSQFLYMMPEVTLVVLLLVTFVADFATSQKIRTLASTDKRRSWFNSMICLLMFAHILI NLFPIETHTVFGGMYIATPAIGVIKTILAFGTLIVLIQSKEWLSRPDTAFKEGEFYLLVI ATLLGMNMMVSANHFLLFFLGLEMASVPMACLVAFDKYRHDSAEAGAKFILTATFSSGVM LYGISFIYGAVGTLYFEDIATQLTATPFTILGMVFFFSGLGFKISLVPFHFWTADSYQGA PTTVTGYLSVVSKGAAAFALCTILMKVFAPMVLYWQYMLYIVIVLSITVANLFAIRQTNL KRFMAFSSISQAGYIVLAIVGNSALSVTALSFYVLIYVVANMAVFTIISAVEEHNNGTVM MDSYNGFYQTNPKLAFLMTLALFSLGGIPPFAGMFSKFFIFMAAVQDADLSTSVGAWAYI VLFIALINTVISLYYYLLIVKAMYIKKSENPLPTFKSHTNTKLALAVCTAGVVLFGVCYM VFDWIHAASVAL >gi|281304656|gb|ADEF01000061.1| GENE 11 10849 - 13692 2645 947 aa, chain - ## HITS:1 COG:BH3594 KEGG:ns NR:ns ## COG: BH3594 COG0178 # Protein_GI_number: 15616156 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Bacillus halodurans # 6 946 4 944 957 991 53.0 0 MPREDDKINIFGARVHNLKNIDVEIPRNALTVITGLSGSGKSSLAFDTIFAEGQRRYIET FSAYARNFLGNMERPDVDKITGLSPVISIEQKTTNKNPRSTVGTTTEIYDYLRLLFARAG TAYSYMTGEKMVKYTEEKVIDMILHDYADKKIFILSPLVKQRKGHYRELFESMRRKGYLY MRVDGEIKEVVRGMKVDRYKNHNIEVVIDKLQVRGNDDERLKKTIQIAMKQGDGVIMIME KDSGIIRNFSKRLMDPVSGISYGEPAPNIFSFNSPEGACPHCKGLGTVNEIDLKKVIPND NLSIYEGAIVPLGKYKKQMIFWQIDAILHRYDLNIKTPFREIPQEAVDEILYGSLENIKI AKELVHTSSDYFVTFDGIIKYLRTVMENDDSSAGQKWADQFLATTTCPECNGMRLKRESL SYRIGNENIAQVANLDMSELKDWLEHAEAHLDEQQKVIAAEIIKELQTRVSFLLEVGLNY LSLNRQSASLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNERLIHSLKELRDL GNSVIVVEHDKDMMLAADYIVDIGPKAGRKGGEVVFQGTPQQMLRQSTITADYLNGKRSI ELLPKRRKGNGKSIWLRGAKGNNLKDVEVEFPLGKLIVVTGVSGSGKSTLINETLQPILS KHFYRSLKKPMPYDSIEGIDNIDKVVNVDQSPLGRTPRSNPATYTGVFSDIRSLFVNLPE AKIRGYKPGRFSFNVKGGRCEACNGNGYKTIEMNFLPDVMVPCEVCHGKRYNRETLEVRY KGKSIADVLDMTINQAVEFFDTVPNILHKIKTIQDVGLGYIKLGQPSTTLSGGESQRVKL ATELSKRDTGKTLYILDEPTTGLHFEDIRILMNVLQQLVDRGNTVVIIEHNLDVIKLADY IIDMGTEGGRGGGKVLSTGTPEEVAQSKEGYTPRFLKEELKLTRKKK >gi|281304656|gb|ADEF01000061.1| GENE 12 13744 - 14478 495 244 aa, chain - ## HITS:1 COG:no KEGG:PRU_1452 NR:ns ## KEGG: PRU_1452 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 148 240 37 128 134 144 69.0 3e-33 MQYSTTLDKQNNGMKIKFIISTLTLLFPLLLSAQEQPTINPHAVYFSDKGEPSEPTTSIS GSAPLRVLLTANESHTTGWTAYYEWRITLEGEKAPYLVRYEKDTEVRFTKAGAHRIVLYA IFTQGQDSVKYTQEYWADAQPITVSISESKLEMPNAFSPNGDGINDVYKAKEGWQSIIEF KGYIFNRWGQKLFEWHNPAEGWDGKYQGKDVKQGVYFCLVKAKGADGQVFNIKTDVNLLR TYQP >gi|281304656|gb|ADEF01000061.1| GENE 13 14584 - 15999 1098 471 aa, chain + ## HITS:1 COG:no KEGG:PRU_1451 NR:ns ## KEGG: PRU_1451 # Name: not_defined # Def: LysM domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 10 471 1 450 450 461 48.0 1e-128 MKQKKTICDMKPIFNYIVLLLTLLFCLGTTAQVNQWRDIYEAKKKDTVFGIARKYGISVP DLMDANPEMKVEGYELKKGDTVFIPFEKGKKPNAVPVVPKTDKNQPVTTQLVKGKELDIT KRAIRIGVMLPLHNVDGDGRRMVEYYRGLLLACDDLKRQGISTDVYAWNVPIDADIRQTL LDVNAQRCDIIFGPLYTKQVTHLGDFCKRFGIKLVIPFSIESGEVATNPQVYQVYQSADQ LNEDAIHAFLNRFPNYHPVFIDCNDRDSQKGIFTFTLRKQLEDKKIAYNITNLKSSEEQF AKSFTLSNPNVVVLNTGKSPELNVALAKIDGLKAANPTLSVSLFGYTEWLMYTKVYFEYF CKYPTYIPTVAYYNVLSPQTKQFEQKYRLWFKEEMQYAIPRFALTGYDHAQFFCRGLHQY GKAFSGLKKQNSYTALQTPLDFQRIKKAGWQNSTFMLIHFKSNGGIESISY >gi|281304656|gb|ADEF01000061.1| GENE 14 16035 - 16775 590 246 aa, chain + ## HITS:1 COG:no KEGG:PRU_1450 NR:ns ## KEGG: PRU_1450 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 20 244 22 263 269 233 45.0 4e-60 MKHPLLSLFLLFYPLLLTAQVGSHRNEFAIGVNGGYVLSNVGFVPKVTQTFHGGMTGGVS FRYISEKYFQTLCSIHAEINYVQAGWKEDIVNLQNEPVLNKSTGLAEEYSRTINYIQVPV FAHLAWGKEQRGFQFFFQAGPQFGYMLNESTQMNFELNQANVQDRANAETTQYKMPVEHK FDYGIVAGIGVEYSLPKVGHLLLDARYYYGLGNLYGDTKRDYFARSNLSNIQLRLSYLFD ITTTTK >gi|281304656|gb|ADEF01000061.1| GENE 15 16786 - 18312 1624 508 aa, chain + ## HITS:1 COG:lin0564 KEGG:ns NR:ns ## COG: lin0564 COG3104 # Protein_GI_number: 16799639 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Listeria innocua # 2 499 9 481 492 142 26.0 2e-33 MFENQPKGLFALALANTGERFGYYTMIAVFVLFLRANFGLDPGTAGMIYSVFLGLVYFLP LVGGVLADKFGFGKMVTIGIVVMFLGYLFLSIPLGGETFALLVMLLALLFISFGTGLFKG NLQVMVGNLYDDPKYADKRDSAFSIFYMAINIGALFAPTAAVRIKEWAESVGYAENDAYH FSFAVACVSLIISMAIYYGFRSTFRHVEGNGTAAKTDDGQAIETEELSKKDVKDRVVALL LVFAVVIFFWMSFHQNGLTLTYFANEFTQKTSSGVQSMAFDVVNLVMIIFIVYAGISLFQ SKTQKAKGISLAVIVAAIVVLIYKYTQVEGAIDVSAPIFQQFNPFYVVALTPVSMAIFGS LAAKGKEPSAPRKIAYGMVIAAFAYTIMIVGSQGLLTPNEQALAAEAGTASYASANWLIS TYLVLTFGELLLSPMGISFVSKVAPPKLKGAMMGGWFAATAIGNLLVSVGGYLWGDLPVW VVWSVFIGVCLLSALFMFSVMKRLEKVC >gi|281304656|gb|ADEF01000061.1| GENE 16 18411 - 18647 160 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTEQQPSHHQHATEHHHSTEHHHHSTEHHHHHRKHPQFQNNHAMRKKRRKMASNLLFFSL CIIAALIMMAVIWMYTAE >gi|281304656|gb|ADEF01000061.1| GENE 17 18858 - 21059 2354 733 aa, chain - ## HITS:1 COG:MA3879 KEGG:ns NR:ns ## COG: MA3879 COG3808 # Protein_GI_number: 20092675 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase # Organism: Methanosarcina acetivorans str.C2A # 6 728 13 683 685 541 50.0 1e-153 MNIPFIFWLVPVASVVALSMAWYFFQSMMKYDEGTPRMREIAQHVRRGAMAYLKQQYTVV LYVFIALAILFAFMAYVLKIQNPWVPVAFLTGGLFSGLCGFFGMKTATYASGRTANAARK SLNQGLQIAFRSGAVMGLVVVGLGLLDIAMWFILLTYLYHGSNMALVTVTTTMLTFGMGA STQALFARVGGGIYTKAADVGADLVGKVEQDIPEDDPRNPATIADNVGDNVGDVAGMGAD LYESYCGSILSTAALGATAFVASGDMQLKAVVAPMIIAAVGIFLSLIGIFLVRTKEEATM KDLLKSLSLGTNVAAVLIAIATFLILYFLGITNWLGVSFSVVTGLAAGVIIGQATEYYTS HSYKPTKEIAVSSQTGAATVIIKGIGTGMISTCIPVVTISVAIMLSYLCANGFDMSMNAD SISRGLYGIGIAAVGMLSTLGITLATDAYGPIADNAGGNAEMSNLGEEVRERTDALDALG NTTAATGKGFAIGSAALTALALLASYIEEVKIAMVRMVEDGHQFVNAAGNVFNPMNATMS DFMDFFQVNVMNPRVLVGAFIGAMAAYLFCGLTMGAVGRAAGAMVDEVRRQFREIKGILE GKATPDYGRCVEISTKSAQHEMILPSLLAIAIPIVVGIILGVAGVLGLLVGGLAAGFTLA IFMANAGGAWDNAKKMVEEGNFGGKGSACHKATVVGDTVGDPFKDTSGPSLNILIKLMSM VSIVMAGLTAALI >gi|281304656|gb|ADEF01000061.1| GENE 18 21199 - 21399 93 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFPSPLNQYSNLKRQLFCENQRNYVYCLPIDFFYFEDFRWSFFGKITGQKQQIPLPKINL LLKKEK >gi|281304656|gb|ADEF01000061.1| GENE 19 21978 - 23177 1011 399 aa, chain + ## HITS:1 COG:no KEGG:PRU_1072 NR:ns ## KEGG: PRU_1072 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 19 398 3 377 377 304 43.0 3e-81 MKRLLYIFFIVSFAVTAQGQRKEISQARQWVKRGNNLDKAEKSMRSLLNDSTNRGNKKIW LTLFEAVRKQYEQGNEKLYLKQKYDTTRLFSLARNMFEDLQAFDSIDALPNKRGKVAPAY RSEHAQYLHQIRPNLFNGGAFFLNKKKYAEAYQMYNTYIQSAYEPLFEKYQYVEKDRRMP EASYWAAFSAYQLKKYDATLKHSHLALKDSVHYPYMLQYLANIYDEKKDTTMYLKVLDEG FTTHPSFPFFFPRLVDYYVMTKQFDNALDVIDRALAVDSTNQLYQFAKSTVLLNTGRYDA CIQICDDLIAKNDSMPEPYLNAGLAYFNQAVLLDNDTKLSKKNRKQILGYYHKALPYLER YRALAPEMKDKWGTPLYTIYLNLNMGKEFEEIDRIINQK >gi|281304656|gb|ADEF01000061.1| GENE 20 23187 - 24503 1029 438 aa, chain + ## HITS:1 COG:RSc0622 KEGG:ns NR:ns ## COG: RSc0622 COG0513 # Protein_GI_number: 17545341 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Ralstonia solanacearum # 3 431 19 457 465 221 31.0 3e-57 MNVTVDLAKLGIEQLSAMQLKASDSIAQGERDVILLSPTGSGKTLAYLLPILQKLDVSSK EVQAVVIVPNRELAIQSAEVMQLLTKAMKGFACYGGRPTMDEHRQLRQVQPQIVFATPGR LNDHLDKRNIAIETIQYVVIDEFDKCLEMGFQEEMSKILEKLTAVKQRILLSATDAVEIP HFVNMNNGERLDYLTSATVSHQVRVFSVHSPDKDKLQTLKQLLLSFGNQSTIVFTNYRES AERIHDYLTFQHFYSTVFHGGLDQQERESSIYKFSNGSVNILVSTDLASRGLDIPDVDNI VHYQLPDQEENYVHRTGRTARWEKEGRAFLLIGPTEEIPAYAISHTQEYSIPVTDSQPAL PKMATIYIGKGKKDKISKMDVVGFLCKKCQLAPDEIGRIDVNNYYVYVAVQRNKLQEVLK RAKGQKIKGLKTIFEAAE >gi|281304656|gb|ADEF01000061.1| GENE 21 24613 - 25680 1117 355 aa, chain + ## HITS:1 COG:lin2957 KEGG:ns NR:ns ## COG: lin2957 COG1932 # Protein_GI_number: 16802016 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoserine aminotransferase # Organism: Listeria innocua # 1 351 1 352 363 337 49.0 2e-92 MEKYNFNAGPSILPREVIENTAKQILDFNGIGLSLMEISHRSKDFQPVVDEAVALIKELL QIPEGYAVIFLGGGASLQFHMIPNNFFVKKAAYLNTGTWAKKALKEAKFFGEVVEVASSA DKNYSYLPKGWSVPEDCDYFHITSNNTIYGTEIREDLDVKVPLIADMSSDIFSRPIDVSK YACIYGGAQKNLAMAGVTFVIVKEDMLGKTGREIPTMLDYRTHIEKGSMFNTPPVVPIYS ALETLRWIKKSGGVEAMDKLAHQRADLLYAEIDRNKLFKGTVAKEDRSLMNICFVMNEEY QDLEKPFFEFATERGMVGIKGHRSVGGFRASCYNAMSVDGVKALIACMKEFEEKH >gi|281304656|gb|ADEF01000061.1| GENE 22 25862 - 26779 1073 305 aa, chain + ## HITS:1 COG:PAB0514 KEGG:ns NR:ns ## COG: PAB0514 COG0111 # Protein_GI_number: 14520969 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Pyrococcus abyssi # 1 290 4 301 307 154 35.0 3e-37 MKVLIATEKPFNAKAVEAIKKELESQNHCVKLLEKYTSTDELKDAVKDAEAMIVRSDKIT KEILDAAPKLKVVVRAGAGYDSIDTAYAKEKGVVVENTPGQNSNAVAELVFGLLIYMCRS CFSGKSGCELKGKKLGILAFGNIGRHVARIANGFGMEVYGFSRSHAENPKKEDGVQFVAT KEELFKQCDIVSVHLPANEHTKQSVGYDVVNLMKKGGILVNTARKEVINEPELLRLMGER EDLKFVTDIKPDADAEFAKFEGRYFTTPKKMGAQTAEANANAGIAAAQQINAYFKDGCTK FQVNK >gi|281304656|gb|ADEF01000061.1| GENE 23 26785 - 28032 1203 415 aa, chain + ## HITS:1 COG:CAC0016 KEGG:ns NR:ns ## COG: CAC0016 COG4198 # Protein_GI_number: 15893314 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 1 414 1 413 414 401 47.0 1e-111 MATIKPFKGVRPPKDLVEEVESRPYDVLDSEEAREEAGDNEKSLYHIIKPEIDFEQGTSE YDPRVYEQAAKNFKKFQDKGWLKQDEHENYYIYAQTMNGKTQYGLVVGAYCQDYLNGVIK KHELTRRDKEEDRMKHVRVCDANIEPVFFAYPDNQTLTALIERYASEKPEYDFIAPIDGF RHQFWVISDAKDIETITAEFKKMPALYIADGHHRSAAAALVGVEKSKANPNHTGHEEYNY FMAVCFPASQLTILDYNRVVKDLNGMSSEEFLKALEKNFDVVEEGTKSYKPQQLHEFSLY LDGKWYSLKAKPGTYDDNDPIGVLDVDISSRLILDELLGIKDLRSDKRIDFVGGLRGLEE LERRVESGEMKMALALYPVSMQQIMDIADSGKIMPPKATWFEPKLRSGLVIHKLS >gi|281304656|gb|ADEF01000061.1| GENE 24 28065 - 28619 459 184 aa, chain + ## HITS:1 COG:NMB2153 KEGG:ns NR:ns ## COG: NMB2153 COG1739 # Protein_GI_number: 15677966 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Neisseria meningitidis MC58 # 6 166 16 176 203 151 44.0 5e-37 MGEGFYSEKRSKFLAFAHHVTTENEVKELLQTYKKKYYDARHCCYAYMLGADRSVFRAND DGEPSSTAGKPILGQINAHELTDILIVVVRYFGGTKLGTSGLIVAYRTAAAAAIENAQIE TRYVEDIIDYSFTYPLLNEVMRVVKELEPRIVSQTFDNTCHISLAIRKSQAAELRQRLQQ LSFQ >gi|281304656|gb|ADEF01000061.1| GENE 25 28710 - 28919 69 69 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYFILVKSTVYIRYKDSTFFRYFLNLQAIFNSLQHNYQNHPPFIAFYLYEFSTQSLRVD YNSKTTQHF >gi|281304656|gb|ADEF01000061.1| GENE 26 29030 - 29980 758 316 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 18 315 25 320 336 296 47 2e-79 MGIFGLFNKKKKETLDQGLEKTKQSVISKLSRAVIGKSKVDDEVLDNLEEVLITSDVGVD TTLKIIQRIEERVERDKYVSTSELNAILREEIATLLAENHSEDNESWSLPTDHQPYVILV VGVNGVGKTTTIGKLAYQFKQAGKKVYLGAADTYRAAAVDQIVIWGERVGVPVIKQQMGS DPASVAFDTLQSAKANHADVVLIDTAGRLHNKVGLMNELKKIKEVMKKVLPQAPDEVLLV LDGSTGQNAFEQAKQFSAVTQITSLAITKLDGTAKGGVVIGISDQLKVPVKYIGLGEQME DLQLFQRKEFVDSLFG >gi|281304656|gb|ADEF01000061.1| GENE 27 29996 - 31306 1161 436 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229254937|ref|ZP_04378866.1| SSU ribosomal protein S12P methylthiotransferase [Capnocytophaga ochracea DSM 7271] # 4 433 6 431 433 451 51 1e-126 MIVLKKNQIDIITMGCSKNLVDSEKLMRLFEDNGYRCTHDSESPDGEIAVINTCGFIESA KEESINTILSFVEAKKEGRLKKLFVMGCLSERYKDELENEIPEVDKFYGKFNYKQLLSDL GKSEISSCHGLRHLTTPRHYAYLKISEGCDRQCAYCAIPLMTGKHKSRLKLDILTEVKDM VAQGVKEFQVIAQELTYYGRDIDGKQHIADLISAIAEIEGVQWIRLHYAYPNQFPLELLD VIRENKKVCNYLDIALQHISDGVLSRMHRHVTKLETLNLIKTIRAKAPGIHLRTTLMVGF PGETEEEFQELLDFVRWARFERMGAFMYSEEEGTYGALHYQDDVSLAVKQQRLDQLMAVQ QEISAEIEAEKIGKTMKVIIDRKENDYYIGRTEYCSPDVDPEVLIHSAGKNLEIGAFYQV KITDAEEFDLYGEVVE >gi|281304656|gb|ADEF01000061.1| GENE 28 31322 - 31609 272 95 aa, chain + ## HITS:1 COG:no KEGG:PRU_0753 NR:ns ## KEGG: PRU_0753 # Name: not_defined # Def: HU family DNA-binding protein # Organism: P.ruminicola # Pathway: not_defined # 1 93 1 93 95 121 61.0 7e-27 MNNKEFIAELAQRCGYTQEKTQNLVNILVEAMASNFDEGEAVSIPSFGTFEIKKRLERIL VNPSTGKRMMVPPKLVLNFRPTPLVKEQLKKGGNS >gi|281304656|gb|ADEF01000061.1| GENE 29 31606 - 32979 1111 457 aa, chain + ## HITS:1 COG:no KEGG:BDI_0944 NR:ns ## KEGG: BDI_0944 # Name: not_defined # Def: putative integration host factor IHF alpha subunit # Organism: P.distasonis # Pathway: not_defined # 2 197 5 199 363 102 37.0 4e-20 MIKLTDLAAVLVEKAELTKREADFFIPLFIDVLTTGLKSDKQVKIKGLGTFKVTAVSPRE SVDVNTGERILIEGRDKISFTPEVALRDRVNAPFEQFETVTISDDADFSEIDERYQAEEN TEEQEETSPTQPQKEEEQQPEEQLPQQEVVTDSVDAPSKEMANEPEEKQVEPLVEPSQQP ESSVIVAPMTEEKKEEAIENLQNTSDKQSEEMSTFAKTDTEKVETTEAVSDEIDEISEDT QYLRKTLHRTQRNQKLLIGAVCCLLLLMIGSGLYVAQQFSLRDHRIEHLMAELISAKKTN ESAVKETPQMDENADQQDNNSVEQTNQTDGGDEVTAAQQHEDAAPVSKETSSLGQQQATT RSANRVISAEKTQEAQTKNRQYASKYDADPRIRTGAYAITGIAQTVTVRPGQTLNSISRA YLGPGMECYMEAVNDKAELKAGDKVKIPALKLKKKMK >gi|281304656|gb|ADEF01000061.1| GENE 30 33350 - 34924 1143 524 aa, chain - ## HITS:1 COG:RSc1040 KEGG:ns NR:ns ## COG: RSc1040 COG1530 # Protein_GI_number: 17545759 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribonucleases G and E # Organism: Ralstonia solanacearum # 10 507 10 483 1014 262 31.0 1e-69 MTSEVVIDVQEKDISTALLEDKRLVEYQNEPRSASFSVGNVYIAKVKKLMPGLNACFVDV GYERDAFLHYLDLGSQFNSYTKYLKQVQSDRKKLYPFAKASHLPDLKKDGSVQSTLTVGQ EVLVQIVKEPISTKGPRLTGELSFAGRFLVLIPFGDKVSVSSKIKKGEERARLKQLVQTI RPKNCGVIVRTVAEGQRIAALEGEMKVLTKRWQNAIVKVQKTQNRPQLVYEEAVRAIALL RDIFSPDFENIYVNNDEAYRQVSDYVSLIAPNKAGIVKKYTGSVPIFDNFNITKQIKSSF GKTINYKHGAYLIIEHTEALHVVDVNSGNRTRNENGQEANALEVNLGAADELARQLRLRD MGGIIVVDFIDMHLAEDRQLLYERMCKNMQNDRARHNILPLSKFGLMQITRQRVRPVMDV SVDETCPTCNGTGKIRSSILFTDRLEDKIDKLVNKIGIKRFYLHVHPYVAAYINQGIISL KRKWQIKYGLGVNIVPSQKLAFLQYEFYDAKKEFIDMKEEIETK >gi|281304656|gb|ADEF01000061.1| GENE 31 35031 - 35120 80 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPNGKKKKGHKMATHKRKKRLRKNRHKSK >gi|281304656|gb|ADEF01000061.1| GENE 32 35238 - 35522 254 94 aa, chain - ## HITS:1 COG:XF1190 KEGG:ns NR:ns ## COG: XF1190 COG0776 # Protein_GI_number: 15837792 # Func_class: L Replication, recombination and repair # Function: Bacterial nucleoid DNA-binding protein # Organism: Xylella fastidiosa 9a5c # 1 93 1 92 94 58 36.0 2e-09 MTKADIINEIAASTGLQKKEVAVVVESFMSKVKESLLEKKENVYLRGFGSFIIKHRAAKT ARNIQKNTTITIDAHNLPSFKPSKSFVNAMKESN >gi|281304656|gb|ADEF01000061.1| GENE 33 36377 - 37465 751 362 aa, chain + ## HITS:1 COG:SMa2355 KEGG:ns NR:ns ## COG: SMa2355 COG0389 # Protein_GI_number: 16263727 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Sinorhizobium meliloti # 1 338 26 363 379 308 47.0 9e-84 MRKIIHVDMDAFYAAVEQRDHPELQGKPIAIGHDGPRGVVSTASYEARQYGVHSAMSIAK AKRLCPTLLIVPHHGERYHEVSTEVRQIFHEYTDAVEPISIDEAFLDVTENKFQIEDAKE IAIQIKAKILERTHLTASAGVSFNKFLAKIASEYQKPDGLFEISADEAYEFIGQLRIEDF WGVGPKTAAQMHKMGIFVGSQLRQVSEKHLVEVFGKLGHVYYQYARGCDDRPVVSEWLRK SVGCERTFLKDISNQSAVLIELYHTVLELVERIEEAKFEGKTLTLKIKFYDFEQITRSVT ASEALTTKNQILPLAKQLLKSVDFSIRPIRLLGLAVSNPWIEENIPTERKWKEEWIEGFE NL >gi|281304656|gb|ADEF01000061.1| GENE 34 37723 - 39192 1540 489 aa, chain + ## HITS:1 COG:BB0348 KEGG:ns NR:ns ## COG: BB0348 COG0469 # Protein_GI_number: 15594693 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Borrelia burgdorferi # 2 464 4 468 477 384 46.0 1e-106 MKQTKIVCSISDLRCDEDFLRKLFFAGMNVVRMNTAHATPEGMTRIIKNVRAVSSHIGIL IDTKGPEVRTTNVEQPLTYKTGEIVKIFGRPDIDTTHDAINLSYADITKDVRVGDDILFD DGALCMKVIENAGPMLIAQVQNDGVLGAHKSVNIPGEHIDLPALTEKDKHNILFAIEQDI DFIAHSFVRNAEDVKAVQAILDEHNSDIKIISKIENQEGVDNIDEIIEASYGVMIARGDL GIEVPIEEIPGIQRQIIRKCVMKKKPVIVATQMLHTMIHNPRPTRAEVTDIANAIFSQTD ALMLSGETASGKYPLEAVQTMARIAEQAEADRTWDSDVNPIQKDNITQREFLAHSAIEST RQLGVKGIITDSETGLTARNLAAFRGPTPILAICYRERTQRLLNLSYGILPIYQKEHTNS EYIFTAAIRMLRQKGYIQSEDKIAYLSGSFGKNGGTTLLEINRVSQVFDKSYEFHLPRYG DVNSKKQQD >gi|281304656|gb|ADEF01000061.1| GENE 35 39607 - 40974 714 455 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 13 421 3 406 451 279 37 2e-74 MGMIDTSAFQGKTASYYTLGCKLNFSETSTFAELLQGMGVRTVQCGEPADICLINTCSVT EVADHKCRQAIRRMVRENPGAFVIVTGCYAQLESQTVSQIEGVDLVLGSNEKANLVQYLN DAWLQKSELAATSPNHRPSLHTYQSVKTKDIKTFQPSCSRGNRTRYFLKVQDGCNYFCTY CTIPFARGFSRNPSIDFLVKQAEQAAAEGGKEIVLTGVNIGEFGESTNETFLDLVKALDQ VQGIKRFRISSLEPDLIDDELIDYCAHSRAFMPHFHIPLQSGSDEVLQLMHRHYDTALFA HKILYIKEKIPDAFIGVDVMVGSRGEKPEYFEACYQFLKQLDVTQLHVFPYSERPGTRAL SIPYVVSDKEKKVRSKRLLQLSDEKTKAFYQKYIGQEAEVLFEKAVRGRTMHGFTKNYIR VELPASLAKDKYDNQLITVKLGDFNHQQSALKVVL >gi|281304656|gb|ADEF01000061.1| GENE 36 40971 - 41990 613 339 aa, chain + ## HITS:1 COG:CAC2327_1 KEGG:ns NR:ns ## COG: CAC2327_1 COG1216 # Protein_GI_number: 15895594 # Func_class: R General function prediction only # Function: Predicted glycosyltransferases # Organism: Clostridium acetobutylicum # 2 339 6 359 378 126 29.0 8e-29 MKVAVVILNWNGEKMLAKYLPTLLQHLQESVEVFVADNASTDGSVALLKEKFPAVKRILL DKNRGFAEGYNQALRQINATYYILLNSDIEVSSGWLSPLITWMDAHPETAACQPKLLSIR QRDYFEYAGACGGFIDKYGYPFCRGRVFDVVEKDEGQYDEICPILWATGACLMIRATDYW KVGGLDGRFFAHNEEIDLCWRLRAMGREIYCVPESKVYHVGGGTLPKNNPMKTYLNFRNN LTMLYKNLEADELLHVMRVRWWLDYVAAFKMLILDGHWGDFKAVFKARKAFRKWKKDFEG GRQYLQQHRKVSNHQLLSPYSVLWQYYGKGRHHFSELTK >gi|281304656|gb|ADEF01000061.1| GENE 37 42231 - 43001 561 256 aa, chain + ## HITS:1 COG:no KEGG:PRU_0632 NR:ns ## KEGG: PRU_0632 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 19 254 28 265 267 252 49.0 1e-65 MLSACQLKLKPNNEDDRKLLVEVQRYDRLESRYLTTGDYSALQQMNTTYPMETRTLIEDV LNIGEVNETGINAKFLNFYQDSLLQVIIADAESEFVSMDDINKDLSNAFRKLQRLLPDLK VPVIYSQIGALDQSIVIGNDAIGISLDKYLGADYPIYRQFYTERQRESMKREFIVPDCLV FYLLSKYPLNKEQQHSDFVKELHMAKMMWATNKVLGRRIYQTSQVNMIDQFVRQHRTVSL EELLKQQDYSSFEKHR >gi|281304656|gb|ADEF01000061.1| GENE 38 43244 - 43942 709 232 aa, chain + ## HITS:1 COG:BH3140 KEGG:ns NR:ns ## COG: BH3140 COG0290 # Protein_GI_number: 15615702 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 3 (IF-3) # Organism: Bacillus halodurans # 6 171 20 187 190 154 47.0 1e-37 MKNDKLSKQYRVNEQIRVREVRVVGDDGSQVMPTRQALDLARQQDVDLVEISPNAQPPVC RLIDYSKFLYQQKKRAKEMKQKQVKVDIKEIRFGPQTDEHDYQFKLKHAREFLNEGNRVR AYVFFRGRSILFKEQGEVLLLRFANDLEDFGKVEQMPKLEGKRMFIYLSPKQVGVEKKSQ QKRDREQALKEAKEAKKKVPTDGSSKEDKSNGGLFDNAKNGSEALKKLKEEE >gi|281304656|gb|ADEF01000061.1| GENE 39 44018 - 44215 239 65 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|153808045|ref|ZP_01960713.1| hypothetical protein BACCAC_02331 [Bacteroides caccae ATCC 43185] # 1 65 1 65 65 96 69 3e-19 MPKQKTNSGAKKRFSFTGTGKIKRNHAYHSHILTKKTKKQKRNLVGYTLVDKSNLKQVRD LLNLR >gi|281304656|gb|ADEF01000061.1| GENE 40 44254 - 44598 521 114 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|53712979|ref|YP_098971.1| 50S ribosomal protein L20 [Bacteroides fragilis YCH46] # 1 114 1 114 116 205 87 5e-52 MPRSVNHVASKAKRTRILKQTKGYFGARKNVWTVAKNTWEKGLTYAYRDRRNKKRNFRSL WIQRINAAARLEGMSYSVLMGALNKAGIEINRKVLADLAVNNPEAFKAIVDKVK >gi|281304656|gb|ADEF01000061.1| GENE 41 44704 - 46164 1101 486 aa, chain - ## HITS:1 COG:BH4038 KEGG:ns NR:ns ## COG: BH4038 COG3263 # Protein_GI_number: 15616600 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain # Organism: Bacillus halodurans # 2 483 1 477 490 280 38.0 3e-75 MITFSTENIFLLGSFLVLVSILISKTGYRFGIPTLLLFLFTGMFFGSEGLGMEFNSPHDT QFIGMVALSIILFSGGMDTKFKEIKPIIGMGVILSTLGVVMTTVLTGGFIFALSQWAGMD IQMSLIVSMLLAATMSSTDSASVFNLLRTQGIGLKHKLRPTLELESGSNDPMAYMLTIAL INVALSGDDFSFLDLSLNIGEQFLLGGALGYGLGRLTVWLINRINLPNAALYPVLLLSMV FITFTLTDLLNGNGYLAVYIAGLVVGNCRLSYRREMSTFLDGLTWLLQIILFLTLGLLVN PSELVDVSLFSLAIAVFMMLVARPVSVFLCLLPYRKIPLKAKTFLSWVGLRGAVPIIFAT YPIINGVEGADLLFNIVFFITLLSLTVQGTTISLVAKKLQLEMPEEKSGNEFGVEIPEEL GSKLKEVTLEESMLENGNLLSEMNIPKGTLVMMVKRGKTILVPNGQLPLEKGDILLCLSS ANKNPE >gi|281304656|gb|ADEF01000061.1| GENE 42 46457 - 50137 3828 1226 aa, chain - ## HITS:1 COG:CAC2499_1 KEGG:ns NR:ns ## COG: CAC2499_1 COG0674 # Protein_GI_number: 15895764 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Clostridium acetobutylicum # 5 406 3 404 413 560 65.0 1e-159 MAKEKKFITCDGNEAAAHISYMFSEVAAIYPITPSSTMAEHVDTWAAKGRKNMFGQPVLV QEMQSEAGAAGAMHGSLQSGALTTTYTASQGLLLMIPNMYKIAGEQLPCVINVSARTVAT HALCIFGDHSDVMACRQTGFAMFCSGSVQEVMDLSAVPHLATLKTSIPFINFFDGFRTSH EYHKIEMIDEEAIKNMVDNDDIKRFRDRALTPERPVTRGTAENPETFFTHREACNLHYED VPDVVEGYLKQISDLTGREYHIFSYYGAKDAENIIILMGSACEATREVIDHQMKEGKKVG MVSVHLYRPFSVKHLLAAVPKTVKRIAVLDRTKEPGAEGEPLYLDVKSAFYDVENKPLIV GGRYGLGSADITPSHIISVFNNLEMNEPKNHFTVGIVDDVTFTSLPLLEDKPLASEGLFE AKFFGLGADGTVGANKNSVKIIGDNTDKYCQAYFSYDSKKSGGFTCSHLRFGDHTIHSTY KVITPNFVACHVQAYLRMYDVLRGLRKNGTFLLNTVFEGKELANFIPNKLKRYFAKNNIT VYYINATKIAQEIGLGNRTNTILQSAFFRITEVIPVDLAVEQMKKFIVKSYGNKGQDIVD KNYAAVERGNEYKQLEVDPAWAQLEDDPEVKEEDVPAYIKEIVRPINSQAGDLLKVSDFI KHDMVDGTMKNGSAAYEKRGVEAFNPEWTSENCIQCNKCAYVCPHAAIRPFVLDEEEVKG FDDTTLAMKVPRPMAGMNFRIQVSVLDCVGCGNCADVCPGNKQGKALKMVPFTRDEKMIE NWNYLTKNVKSKQHLVDIKSNVKNTQFAQPLFEFSGACAGCGETPYVKLVSQLFGDREMI SNATGCSSIYSASLPSTPYTTNAEGKGPAFANSLFEDFCEFGMGMVLGNKKMRNRVVLLL NQLIEKEDTSNELKEAAQKWMEAKDNADASKEAAAQLRPLIQACADKGCTIGKELMTLEH YLIKRSQWIIGGDGASYDIGFGGLDHVIASGEDVNFLVLDTEVYSNTGGQSSKATPLGAI AQFAAQGKRIRKKDLGLMATTYGYVYVAQIAMGADQAQTLKAIREAEAYPGPSLIIAYSP CINHGLKAKGGMGKSQAEEARAVACGYWHLWRYNPLLANEGKNPFQLDSKEPDWSKFHDF LLGEVRYLSVKKAYPDEAEELFQAAEDMAKLRYNSYVRKAQEDWSFSNEEVDETENNNPN TAETKEEVVASKPKEDSKTEHVDAKS >gi|281304656|gb|ADEF01000061.1| GENE 43 50238 - 51425 806 395 aa, chain - ## HITS:1 COG:MJ1637 KEGG:ns NR:ns ## COG: MJ1637 COG1373 # Protein_GI_number: 15669833 # Func_class: R General function prediction only # Function: Predicted ATPase (AAA+ superfamily) # Organism: Methanococcus jannaschii # 30 291 68 342 473 75 26.0 2e-13 MESFFRTHTNLVEHTKAPVRRTLMDEIDWNDRLIGIKGSRGVGKTTFLLQYAQENFESTD RSCLYINMNNFYFQGCGIDEFAASFVQNGGKVLLIDQVFKQPNWSTELRRCYDNFPDLKI IFTGSSVMRLKEENPELNGIVNSYNLRGFSFREFLNLKTNQQFRAYSLDEILRDHERIVK HILPNASPNKYFKDYIHHGFYPFFLENQNFSENLLKTMNMMTEVDILLIKQIELKYLTKI KKLFYLLATEGQCAPNISNLAHEIKTSRATVMNYIKYLADARLINIIYPVGQDFPKKPAK VMMHNTNLQYVIYPNKASEQDLMETFFVNCMWKDHTVNQSSKDHFFIVDDNKKFRICDAK SEHKIRYNNDTLYARYHTEVGQDNKIPLWLFGFLY >gi|281304656|gb|ADEF01000061.1| GENE 44 51560 - 52666 692 368 aa, chain + ## HITS:1 COG:no KEGG:PRU_1233 NR:ns ## KEGG: PRU_1233 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 2 355 24 367 370 262 43.0 1e-68 MKLHVFNPEHDIALAVNMEQFTAPHAARELRADLGYLPALWAEDGDMVLVDDVPAALETV RHHGDDAQEVIFVTDRDLQQLSTLSPMKVEAWGMNKSLVKRLLACNPNFTAVLHNDAQLD TIRQMSNRRFAATHILPALVASHPRFVGKSTYFTGQVQSLKTLFNQPHQRFVLKAPWSSS GRGMRYVDHDFTPHVEGWCKNLIHRQGGIMIEPQYDKVLDFGMEFEASAQGDIQYLGLSL FSTVHGAYFGNIVASEETKRQEISQFIPLDLLNFLQRTLHSLLVAEVSGKYVGPFGVDMM IVKLADAKELCVHPCVEINFRRTMGHVALSLSTNDVPQPKRLMQITYTDKYRLKISLAGD DLATPYTF >gi|281304656|gb|ADEF01000061.1| GENE 45 53391 - 56522 2068 1043 aa, chain - ## HITS:1 COG:no KEGG:PRU_1227 NR:ns ## KEGG: PRU_1227 # Name: not_defined # Def: putative thiol protease/hemagglutinin PrtT # Organism: P.ruminicola # Pathway: not_defined # 1 794 1 775 777 247 27.0 2e-63 MKKTLLFVLIAISTLANANPIGKQEAMKLAMRFLKQKQPTTSTRAKSQRNQLKMVMQCPN AYYVFNNGNGQGFVITSADDRTDAVLGYAYTGKFDVNNIPVQLKDLLSLYEHEIKTAVRL RLKNLKTASGTRAGLSVKRSIHPLIETRWNQGAPYNDACPMGVFERTVTGCVATAMAQVM YYHQCPRGETLDTIPGYKSPKIGKVLDTLPKTTFDWKNMLRTYDENANREQKNAVAKLMK YCGVSTEMDYATAKQGGSGTVAVELPYALTHYFGYSKAARYADRSGYTSKTWNNMIYEEL KEGRPVLYGGVTPTGGGHEFVCDGYESGDYFHINWGWSGLSDGYFRLSVLNPDQQGIGSF EGGYSLSQCAILGVKPNEGEEQLDAMTVIDLHLRGLSQMSRKRIEQGFKGLSMSYELFNY MLLPFEGKMGVGLYKDGKLMKVVHESELISYEPITPKRTFYKAILKDFGAGLKGDYQLLP MCKDKKSNTWQLCPGSEKSVCNLHITETQLNASIINPQTIDLKLVSIDMPKVIKTGRTYT AMAKIKNVGPDFTGSLSFVFGNKRSVLGLSIAPGATIEVPLSFQPDVAKPKTQYSINVWD SMQGRDIDFVGKGEVDVAEGKNVPDAKLTASVFCTNGSSKKADELYGTHMEGRFEVKNTA TDDYDRDLLIAVVGEKQDVQMKQLNVIIPAGKTITLPFAFDNLIPGTRYIVTLLGYEGIY QKGKAICNGAITCKAAVMKYLSDGTSMALEPEESIDLTDAIAVDMRDLNVKKGTKLRPSN NPNCLYYLHEASIVPETLKDKNVILGDEAPKITLQTNQPIKMLRNFTAREITCQRPLVAN GKDTESAWTTLSLPFVPNDMKINGQPAELHVYNFVHEQENKLYFNTTQHIEAYCPYLLEI KHIHDTTADMMLTIHGKDVEVNQHAKSVLGSDNYNFVGTIEQHQPVSAYLYNAETNCFEL SQAPTVECFSAFVEPNHNNDDNAVRSLAVVLDDVELGIPTHTTTNAHQYVIYNLQGVKVG EGKDDIARLPKGVYVVNGKKVIK >gi|281304656|gb|ADEF01000061.1| GENE 46 56640 - 57848 1056 402 aa, chain - ## HITS:1 COG:no KEGG:PG0495 NR:ns ## KEGG: PG0495 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis # Pathway: not_defined # 1 315 6 308 469 114 30.0 6e-24 MKKILLPALLAVLCLGVNAESKKAPNYYRAIPKVHTHRLAQWSTFGGSEVFKYKYDDNGF LTEVESTEDDRLLEVIKYTYDANGYLKEETRYTVKPEGGQRKDRRDVYDRDDNGFIKTYH RFTLKPDKEGKLVLMEDLRSTYEYDAQMRVIKTNDVQFDEKNLKLEGFADRHTTITYDDK GREQTFSFMMSNGNNVWKEVFEYDNNIDDRMVGLKYIPGEEMTESTPMELKYVYDDNGDI TNTGTEAFSYTFSYGDEGDEQYDAAHTFIPLVQSEGDRLYLGPRNCMYFNHLPLNKAFKH VPMSESTDETECSYEENTAVEKKTDGIAEITHDQANISFSNGCLIIEGATNNGTEQVCVY SVTGQLVATHVVRGNKTISLNTLPAGEYIAKIGSKVVKFAKS Prediction of potential genes in microbial genomes Time: Sat May 28 07:45:47 2011 Seq name: gi|281304654|gb|ADEF01000062.1| Prevotella timonensis CRIS 5C-B1 contig00038, whole genome shotgun sequence Length of sequence - 530 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 178 78 ## Predicted protein(s) >gi|281304654|gb|ADEF01000062.1| GENE 1 2 - 178 78 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no WRAVSATGVNGASFPNHSFCSFRAQDRGATVPRVLPWAKFLLGFQPVFAICKPYILKL Prediction of potential genes in microbial genomes Time: Sat May 28 07:45:52 2011 Seq name: gi|281304652|gb|ADEF01000063.1| Prevotella timonensis CRIS 5C-B1 contig00009, whole genome shotgun sequence Length of sequence - 1733 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 841 - 894 7.2 1 1 Op 1 . - CDS 900 - 1106 225 ## gi|282877045|ref|ZP_06285888.1| DNA-binding protein 2 1 Op 2 . - CDS 1201 - 1731 237 ## gi|282881476|ref|ZP_06290148.1| hypothetical protein HMPREF9019_0444 Predicted protein(s) >gi|281304652|gb|ADEF01000063.1| GENE 1 900 - 1106 225 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282877045|ref|ZP_06285888.1| ## NR: gi|282877045|ref|ZP_06285888.1| DNA-binding protein [Prevotella buccalis ATCC 35310] # 33 68 341 376 376 73 97.0 4e-12 MNIDDIRALLNDIESDRVERTISATNTDKFGQAKEAEKYGICPTIAVSRYKHDTNWYQTS AYKSSKIY >gi|281304652|gb|ADEF01000063.1| GENE 2 1201 - 1731 237 176 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881476|ref|ZP_06290148.1| ## NR: gi|282881476|ref|ZP_06290148.1| hypothetical protein HMPREF9019_0444 [Prevotella timonensis CRIS 5C-B1] # 1 176 1 176 176 324 100.0 2e-87 EIDVLLKEIEDGTQNEKNNFKFRRTGKEQNVGSIPVAHKLNAFFNTYLPEEGSLKWSIGT LRQVRNEGEHRCDIIRQEKDDNNNLYKFFKSKTFNYVRIDLIKFVNAIEHKLENPDKKEM LESIIKSKLPSVCYVLLRGNSVSLPNKLFAKVRHLNNNDEIILTVSGNTIIDVAAK Prediction of potential genes in microbial genomes Time: Sat May 28 07:46:08 2011 Seq name: gi|281304641|gb|ADEF01000064.1| Prevotella timonensis CRIS 5C-B1 contig00059, whole genome shotgun sequence Length of sequence - 13164 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 3, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 99 - 1304 618 ## BVU_3608 hypothetical protein 2 1 Op 2 . - CDS 1301 - 1945 479 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component 3 1 Op 3 . - CDS 1949 - 3286 789 ## BVU_3610 hypothetical protein 4 1 Op 4 . - CDS 3302 - 4030 548 ## COG1385 Uncharacterized protein conserved in bacteria 5 1 Op 5 . - CDS 4027 - 4590 412 ## BVU_3612 hypothetical protein 6 1 Op 6 . - CDS 4587 - 5831 698 ## COG0477 Permeases of the major facilitator superfamily - Prom 5859 - 5918 2.6 + Prom 5870 - 5929 4.2 7 2 Tu 1 . + CDS 6134 - 6511 106 ## gi|282880432|ref|ZP_06289140.1| conserved domain protein + Prom 6987 - 7046 6.2 8 3 Op 1 5/0.000 + CDS 7076 - 11539 2542 ## COG3513 Uncharacterized protein conserved in bacteria 9 3 Op 2 4/0.000 + CDS 11544 - 12479 679 ## COG1518 Uncharacterized protein predicted to be involved in DNA repair 10 3 Op 3 . + CDS 12506 - 12844 197 ## COG3512 Uncharacterized protein conserved in bacteria + Term 12860 - 12895 1.3 Predicted protein(s) >gi|281304641|gb|ADEF01000064.1| GENE 1 99 - 1304 618 401 aa, chain - ## HITS:1 COG:no KEGG:BVU_3608 NR:ns ## KEGG: BVU_3608 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 395 1 396 400 410 49.0 1e-113 MKLVWKLLKQNMSIPQFVGFFFASLFGMFIVLFGYQFYRDVLPFFQDKDSFMKSDYLVIS KRIDTNTSFSGRTNNFSSSEINHLSQQPFIQKVGSFHSANYQSEVSMDVQGNRLFDSEFF FESIPDAFVNVPLSEWKYDGKDDIVPIIFPKSYLAMYNFGYARNHSLPKISEGLVGMLDV QIHIRGNGQEQTLKGKVIGFSSQLSTILVPESFMVWSNQKFSSTPQNEPNRLIVDVANPT DTQFSQYLEKKGYEVENSNSSAEKMAYFFRLIVVIVMMIGLIISVLSFYILMLSIYLLVQ KNSSKLQNLMLIGYSPSQVAQPYQLLTLSLHGLVFVLAIGILAIVRPLYMDVLYNLLPSL DNGGLGPTCLLGVVLLLGVTAINSWIIRNKMASIWKSNTVH >gi|281304641|gb|ADEF01000064.1| GENE 2 1301 - 1945 479 214 aa, chain - ## HITS:1 COG:AF1819 KEGG:ns NR:ns ## COG: AF1819 COG1136 # Protein_GI_number: 11499407 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Archaeoglobus fulgidus # 28 214 25 209 231 97 29.0 3e-20 MESILFDHVMPHVFEKTEGLQSEVWNKHITLEKGKNYLIEAHSGKGKSTFCSYVIGYRHD YAGCILFNQQDISSFNIRHWIDIRRHHISYMFQELRLFPELTAWENVEIKNNMTKYKSKS EIMSWFEALGIADKTNVQVSKMSFGQQQRVAMMRALVQPFDFLLADEPISHLDDMNAKVM QDLMMTEVNKQGAGVIITSIGKHMPALYDKMIRL >gi|281304641|gb|ADEF01000064.1| GENE 3 1949 - 3286 789 445 aa, chain - ## HITS:1 COG:no KEGG:BVU_3610 NR:ns ## KEGG: BVU_3610 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 11 378 9 405 510 105 24.0 5e-21 MKFSYTYSFIAIIFSVLLFTGCANESYQQAIPKESTALVSFDASQMSGINNKTLLRTILK MKNLDESGIDFTQKIYFFTSPDGNLGICAKVDNADKISTMLQRMGSESISFRDAFFSTIR DSWMVGYNKHSLLIMGPIPLTKQEEAKATIAKYLQQDEEESILASPIYQVLDSLDSPMTL VAQAQALPDKIIAPLMLGAPKDATTTDVLIAAKMKVQKGCWYVEGSPFSWNKRINQTIQE SKKIYRPIQGKYIEAMPDTALFGMFVNVDGKHFLPILQNNKSLQVLLTGINQAIDLDNII RSVNGDMSVVIPQYEQQNISISMAAQLAHTKWLADVDYWKQSVPAGGKLTDWNKHAFVYT NGKTRFFFGVTDNLQFYSGATPQEALNSIKASSHPFESSILHQIKGEKMVMIINVRDYRN ERLSMITDLLRPVFGNIHTLVYKLN >gi|281304641|gb|ADEF01000064.1| GENE 4 3302 - 4030 548 242 aa, chain - ## HITS:1 COG:PA0419 KEGG:ns NR:ns ## COG: PA0419 COG1385 # Protein_GI_number: 15595616 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 7 235 6 233 240 94 30.0 2e-19 MKEVRYFFVPDADHVNELPTSEALHALRVLRLSSGDEMFLMDGVGNFYRAIVTIASTKHC FYEIQETLPQQKSWRGHIHLAIAPTKTMERIEWMVEKMTEIGFDEITFLNCQFSERKQIR PIRLEKIVIAAMKQSRKPWKPVVNPMVSYKNFIHHQTTGHRYIAHCYPEIERKDLLTTLH QITDDDDITILVGPEGDFSVDEVKFAEQAGFESISLGKNRLRTETAGLMAVAMTQMFRRS YP >gi|281304641|gb|ADEF01000064.1| GENE 5 4027 - 4590 412 187 aa, chain - ## HITS:1 COG:no KEGG:BVU_3612 NR:ns ## KEGG: BVU_3612 # Name: not_defined # Def: hypothetical protein # Organism: B.vulgatus # Pathway: not_defined # 1 178 1 179 188 75 31.0 1e-12 MNKIRLTVKSVTEIVGNKDVGLVILVDENEQRQIAIPCDYQMLYQLQLRIQNIPITPLLL PEVLWHVVRSETTADFEILIHDVIDGQYRCLLMNNSTFEPYTIRVSDALLLSLISKTPIY MDENLMKKQSVAFKKDSKGMSIPLNTLTDDMLRKALNKAIEEENYEMASHLRDEMKRRNL LDTDDKK >gi|281304641|gb|ADEF01000064.1| GENE 6 4587 - 5831 698 414 aa, chain - ## HITS:1 COG:STM3113 KEGG:ns NR:ns ## COG: STM3113 COG0477 # Protein_GI_number: 16766414 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 1 409 1 405 418 344 47.0 2e-94 MNLKVRLAAMNFLEFAVWGSYLTCMGIYLTNIGMASNIGIFFAMQGIVSIFMPALMGIIA DRWIPAQRLLGMCHLLAGLFMFGAAYYGYMQGSAAEFGVLFTLYSLSVAFYMPTLALSNS VAYTALTQARMDTIKDFPPIRTFGTIGFICAMWFVDIMGFKSNQNQFVVSGFLSVLLFLY TFTLPKCPVSKHHEATSLVDAFGLRAFSLFKDKHMAIFFIFSMLLGVSLQITNGFATPFI ESFKSIPAYADSFGVKYPVILYSLSQVSETLCILMIPFFMKRYGIKNVMLIAMFAWVLRF GLLGLGNPGSGVWMFLLSMIIYGVAFDFFNISGSLYVDQATPHSLRSSAQGLFMLMTNGI GATAGSFAAQAVVTSHTVNGVTDWPMCWYIFAGYALVVGICFGFMFRPKKEVKV >gi|281304641|gb|ADEF01000064.1| GENE 7 6134 - 6511 106 125 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282880432|ref|ZP_06289140.1| ## NR: gi|282880432|ref|ZP_06289140.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 125 1 125 125 182 97.0 8e-45 MYKIIASLYRYNMRGFNKSIPYFATLSNILVLFIFIYFLIIVLLDTKSIFDIWHADSKGE MYLIGALLVVPLYSLAWFLFPERKMKEHEALLTKKEYRLGLFFYVFLVIFLMVLLFIVAK QRNFS >gi|281304641|gb|ADEF01000064.1| GENE 8 7076 - 11539 2542 1487 aa, chain + ## HITS:1 COG:NMA0631 KEGG:ns NR:ns ## COG: NMA0631 COG3513 # Protein_GI_number: 15793618 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Neisseria meningitidis Z2491 # 708 1118 472 784 1082 91 22.0 1e-17 MKNILGLDLGSNSVGWALVKVEENGNPIGSIKMGSRIIPMSQDILGSFEKGDTVSQTAQR TLYRGKRRLIERHVLRRERLCRVLHIMNFLPAHFDRLLGWDKTDNKTYGKFIDDSEPKLA WRQNKNEMGKMEFVFMDSFHEMLSDFAKHQPQLIANGKKVPLDWTIYYLRKKALTQLISK EELAWILLNFNKKRGYYQLRGEEEEEQPTKKEEYKVLKVISVDADEGQKGNGIWYNIHLE DGGIYKKKSDIPLYDWVGKTLQLIVVTTYEKDGKTPKIFDSGKQNPSYRLPKEDDWGLVK KRTESQLQSSGKTVGAFIYDNILSKPDDKIRGNLVRTIERKYYKKELIEILQQQAKYHDE LHNQNLLESCAKELYAHNDVHYNEVIKSNMINLLVNDIIFYQRPLKSKKSLIANCKYESY EYVDKETGEIKEMPIKCIAKSNPYYQEFRLWQFIHNLRLSDVVTREDVTAQYLSTPQDYC NLFTYLNDRKEIKQDILLKDFFKIKKVQIDKEKVFPIEWNYIKDATKSYPCNETRYELLS ALKRAGMDKQWLDDTPNMQYRLWHLLYSVEEKEESAKALRKLYDDDKFVTSFLKIKPFNK CYGAYSEKAIKRLLTLMRMGKAWNEQAIDAKTLKCIQQIITDNVDSKLKEKIDDSRYVLH HVSDFQGLPTYLASYVIYGRHSEVTDIQCWDSPEDLLKFIRDFKQHSLRNPIVEQVILET LRVVYDIWKAEKHIDEIHVEVAREMKLTAQQRNEANLRNLNNEATNLRIKYLLEELKNDT FIKDVRPLSPIHQEKMRIYEQAVLGNLNKQDKDYDDIIKISKKEHPTNAELIRYKLWLEQ RYCSPYTGKAISLSKLFTTAYEIEHIIPQSRYFDNSFNNKVICEAEVNKAKGNMLGYEFI KKQGGQKIYCTQLGKAVTILKEEAYKQFVNEHYAHNKRKRDNLLAENIPESFSSRQLNDT RYITKTIMSLLSNVVRQQSEEEATAKNLLPSSGSVTDRLKNDWGLKDVWNTIVTPRFERL NKLSGTNDFGEMKEENGNRYFQTNVPLEYEKGFKKKRIDHRHHAMDALVIACTTRNMVNY ISNANANSPKQREDLRQLLCDKNRIINKPWDTFTQDALKALNDIVVSFKNNVRIINRATN RYQRYDKNGKKIIFSQKGDDMWAIRKSMHKETVFGRVNLIRKEVLPIAKALDNISAICNA QLRAYVNDLVDKHFNKKQLVAHFKSLNYKWNRQDVSKVEVWISSDNKTPMVAVRKPLDTS FDKKKIASITDTGIQTILLNYLESKGGDASVAFAPEGIQEMNSNIELYNNGKAHKPIKNV RLSEPLGAKYQVGERGAKTKKYVEADKGTNLFFAIYEDEEGKRYYYSVPLREAIERQKQK LSPVPEYNEKGVALKFYLSPNDLVYVPTEEERTMGTCHIDKARIYKMVSSTGCSCYFVPS TFAKVIVDKVELQSLNKMEKAITDECIKEVCWKLKVDRLGNIINVIK >gi|281304641|gb|ADEF01000064.1| GENE 9 11544 - 12479 679 311 aa, chain + ## HITS:1 COG:PM1126 KEGG:ns NR:ns ## COG: PM1126 COG1518 # Protein_GI_number: 15602991 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein predicted to be involved in DNA repair # Organism: Pasteurella multocida # 38 269 61 292 343 163 40.0 4e-40 MIKKTLCFNNAAYLSLRNEQLLIHIPEVVSQKDLPKPLLQEAERTIPIEDIGVVVLNSLR ITITTGAMQALLANNVAVITCDEKGLPVGLQLPLSGNTLQNERFRHQLDASLPLRKQLWQ QTTKQKILNQEAILRRYTEAETKCMRVWANNVRSGDPDNLEARAAAYYWKNIFPSVPLFT REREGVPPNNLLNYGYAILRAVIARALVGSGLLPTLGIHHHNKYNAYCLADDIMEPYRPY VDKMVIDIMHQEDSIDQLTKDIKFRLLGIPVIDVIIKGKRSPLMIAAQQTTASLYKCFSG EYKTILYPELT >gi|281304641|gb|ADEF01000064.1| GENE 10 12506 - 12844 197 112 aa, chain + ## HITS:1 COG:PM1125 KEGG:ns NR:ns ## COG: PM1125 COG3512 # Protein_GI_number: 15602990 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pasteurella multocida # 6 112 1 108 108 79 39.0 2e-15 MPLDRLSEYRVMWILVFFDLPTETKKEKKAYIDFRKFLIKDGFTMFQFSIYVRHCSSMEN AEVHKKRIHSNLPNTGKVGLLCITDKQFAAIELFYCKKQKTPNAPYQQLELF Prediction of potential genes in microbial genomes Time: Sat May 28 07:46:38 2011 Seq name: gi|281304599|gb|ADEF01000065.1| Prevotella timonensis CRIS 5C-B1 contig00055, whole genome shotgun sequence Length of sequence - 52903 bp Number of predicted genes - 40, with homology - 36 Number of transcription units - 20, operones - 12 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 153 - 240 54.1 # Ser TGA 0 0 + Prom 686 - 745 5.7 1 1 Op 1 . + CDS 797 - 1132 388 ## COG1695 Predicted transcriptional regulators 2 1 Op 2 . + CDS 1157 - 2905 1388 ## PRU_2180 PspC domain-containing protein + Term 2947 - 2987 -1.0 + Prom 3018 - 3077 7.4 3 2 Tu 1 . + CDS 3149 - 5254 1330 ## COG1629 Outer membrane receptor proteins, mostly Fe transport - Term 5601 - 5633 -0.9 4 3 Tu 1 . - CDS 5740 - 6327 156 ## BF1750 hypothetical protein - Prom 6352 - 6411 1.9 5 4 Op 1 . - CDS 6776 - 6916 58 ## - Prom 6937 - 6996 3.2 6 4 Op 2 . - CDS 7009 - 7173 183 ## 7 4 Op 3 . - CDS 7186 - 8931 1614 ## gi|282881493|ref|ZP_06290163.1| hypothetical protein HMPREF9019_1606 + Prom 9898 - 9957 3.6 8 5 Tu 1 . + CDS 10207 - 10347 82 ## + Term 10597 - 10631 0.6 9 6 Tu 1 . - CDS 10516 - 14529 3111 ## COG3250 Beta-galactosidase/beta-glucuronidase - Prom 14706 - 14765 5.4 + Prom 14586 - 14645 4.2 10 7 Op 1 . + CDS 14777 - 15643 687 ## COG4413 Urea transporter 11 7 Op 2 . + CDS 15647 - 18262 2434 ## PRU_1227 putative thiol protease/hemagglutinin PrtT + Term 18276 - 18336 12.9 - Term 18268 - 18320 10.6 12 8 Op 1 . - CDS 18449 - 19801 934 ## gi|282881499|ref|ZP_06290169.1| conserved hypothetical protein 13 8 Op 2 . - CDS 19832 - 20509 523 ## gi|282881500|ref|ZP_06290170.1| hypothetical protein HMPREF9019_1613 14 8 Op 3 . - CDS 20532 - 21320 422 ## PGN_0122 28 kDa outer membrane protein Omp28 15 8 Op 4 . - CDS 21335 - 22951 1259 ## PGN_0121 hypothetical protein 16 8 Op 5 . - CDS 22974 - 23543 441 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 23606 - 23665 10.1 - Term 23844 - 23897 -0.9 17 9 Op 1 . - CDS 23898 - 24812 773 ## gi|282881504|ref|ZP_06290174.1| hypothetical protein HMPREF9019_1617 18 9 Op 2 . - CDS 24861 - 25310 296 ## gi|299141644|ref|ZP_07034780.1| hypothetical protein HMPREF0665_01225 - Term 25320 - 25359 0.3 19 9 Op 3 . - CDS 25374 - 25523 123 ## gi|299141643|ref|ZP_07034779.1| hypothetical protein HMPREF0665_01224 - Prom 25555 - 25614 10.0 20 10 Tu 1 . + CDS 25910 - 28129 1537 ## PRU_0795 OMP85 family outer membrane protein 21 11 Tu 1 . - CDS 28275 - 28739 553 ## COG0782 Transcription elongation factor - Prom 28952 - 29011 8.2 + Prom 29232 - 29291 4.1 22 12 Op 1 . + CDS 29342 - 30298 685 ## Rcas_0326 hypothetical protein 23 12 Op 2 . + CDS 30295 - 31032 432 ## COG4422 Bacteriophage protein gp37 24 13 Op 1 . - CDS 32084 - 33388 869 ## PRU_2258 hypothetical protein 25 13 Op 2 . - CDS 33385 - 33945 463 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 26 13 Op 3 . - CDS 33926 - 34549 405 ## gi|282881514|ref|ZP_06290184.1| hypothetical protein HMPREF9019_1627 - Prom 34572 - 34631 6.5 + Prom 34520 - 34579 6.2 27 14 Op 1 . + CDS 34630 - 35259 405 ## gi|282881515|ref|ZP_06290185.1| hypothetical protein HMPREF9019_1628 + Prom 35270 - 35329 2.3 28 14 Op 2 . + CDS 35358 - 36254 511 ## gi|282881516|ref|ZP_06290186.1| putative lipoprotein 29 15 Op 1 . - CDS 36274 - 36720 392 ## gi|282881517|ref|ZP_06290187.1| conserved hypothetical protein 30 15 Op 2 . - CDS 36751 - 37227 452 ## COG0054 Riboflavin synthase beta-chain 31 15 Op 3 . - CDS 37232 - 38011 880 ## PRU_0202 hypothetical protein - Prom 38123 - 38182 3.4 + Prom 37889 - 37948 7.8 32 16 Tu 1 . + CDS 38147 - 39259 936 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) + Term 39333 - 39370 -1.0 + Prom 39293 - 39352 3.0 33 17 Tu 1 . + CDS 39373 - 39663 284 ## PRU_0200 hypothetical protein + Term 39718 - 39754 -1.0 - Term 39543 - 39584 6.8 34 18 Op 1 . - CDS 39822 - 43712 3125 ## COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases 35 18 Op 2 . - CDS 43744 - 44301 421 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 36 18 Op 3 . - CDS 44348 - 46045 1594 ## COG0793 Periplasmic protease - Prom 46067 - 46126 3.0 37 19 Op 1 . - CDS 46133 - 46555 363 ## COG2131 Deoxycytidylate deaminase 38 19 Op 2 . - CDS 46629 - 48713 1930 ## COG0339 Zn-dependent oligopeptidases - Prom 48739 - 48798 7.4 + Prom 49655 - 49714 12.1 39 20 Op 1 . + CDS 49767 - 49895 77 ## + Prom 49942 - 50001 4.2 40 20 Op 2 . + CDS 50151 - 50369 203 ## gi|282881527|ref|ZP_06290197.1| hypothetical protein HMPREF9019_1640 + Term 50420 - 50469 12.1 Predicted protein(s) >gi|281304599|gb|ADEF01000065.1| GENE 1 797 - 1132 388 111 aa, chain + ## HITS:1 COG:BH0406 KEGG:ns NR:ns ## COG: BH0406 COG1695 # Protein_GI_number: 15612969 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 7 107 67 167 174 78 36.0 3e-15 MIMNVDNVKSQMRKGMLEYCILLLLEKQAAYTSDIIQRLKEAELLVVEGTLYPLLTRLKN DHLLSYNWQESTQGPPRKYYMLTDKGAVFLRELDKAWGEIAATVNFLKQSK >gi|281304599|gb|ADEF01000065.1| GENE 2 1157 - 2905 1388 582 aa, chain + ## HITS:1 COG:no KEGG:PRU_2180 NR:ns ## KEGG: PRU_2180 # Name: not_defined # Def: PspC domain-containing protein # Organism: P.ruminicola # Pathway: not_defined # 1 581 1 514 525 304 34.0 8e-81 MKKNITINMLGRLYAIDEDAYGLLQQYIDTLRSYFAHKPDGKEIADDIEARIAELFDDLK AQGVEAINIQHVQDIITRIGDPKEMVEEEPQDEEKAMQDEEQSEETSTVNRLKDEVVAYF DRLRKSGKRLYRDPSDKKITGLLAGCARYFGGDSLWWRLACVLLVFITFNTSLSSGMFFH VTPFTWTPLWLVLIYFMISIITPVAQNPEDRLKMKGKDVTPQSLAQEVTEEHVQADIPQT RQSGAIGCLGGFFKIILLLMKGFLILVCIFAGLVLVTLLAALIVLLTMPDLFGDIEFATL YSSAVSPALSVVCVVSMAGVLFIPLYCGIHSILSNTKKLLPMGTPQRLMWAGVWTASLIV AIVSGIAIGARISIAEEKQDNLRHEAYIKKNTHNGVFINETDWDFLNQGGWYLLVAPTDR EDHYTSNGEYYTGNQDVRYLDGYSDWGLNYQVEREKTDVAPGTYTLSVVARTNGKGAYVY AIADGRKYMVEIPANGNTSGNIWAEAKRRLSVADSLSSNPDETYYQNIVEANDGNGYGWN RVEIKNIRSTKGSVRYGISTKSSFTGTTFAGQWVSAADFNLK >gi|281304599|gb|ADEF01000065.1| GENE 3 3149 - 5254 1330 701 aa, chain + ## HITS:1 COG:alr2581 KEGG:ns NR:ns ## COG: alr2581 COG1629 # Protein_GI_number: 17230073 # Func_class: P Inorganic ion transport and metabolism # Function: Outer membrane receptor proteins, mostly Fe transport # Organism: Nostoc sp. PCC 7120 # 25 700 190 877 880 259 29.0 2e-68 MIVTTYAFGNAKEHIKADSTYLLKEVVINTTRIPEIKSNAAATVTIIDQKQIAAMSKAEP DLSHLLGLLTPSMALASNTTSSRSQSLRGRGALILIDGIPQSTPLRSTDRDIRSIDVSAI DHIEIVKGSTALYGNGAIGGVINIITKKNTKNKKIAGESSLSGSTYNFYHGTQGMGYRVN QQLYGSINKLNYLVSGSLVKTGSSIDGSGEYISPRYGLGDTYTSNALIKLGYALSAKNKI EFMYNFYRSLQHTALVQKKGEYLKSPAIGIFGEKDPQAVDEGTPYNHNAYLKFSSRKLFS NTDFEASIYGTSLYTIFDFRKHNPKKPRWEEKSGQATIKDQKIGFRSQFNTFLSISDNLF TRLTYGYDYLLDKTSQPLVDGRYWVPNLQSSNHAPFLQTKTTLWQCLNVKLGGRYDLIDV NVPDYDILRTKLSSPEVHVKGGKLKYDNFSFNAGISFNKLSIFQPFVAFSQGFSIFDLGR TLRAAKEDVLSKIITEPVKTNNFELGVYSDINHRLQLNGSVFYTYSKLGSDLKIDEAGFW VVNRTPQKVYGMELNADAQILNNLKAGANFTWFEGKLKSTSDKWDTYMSNISIPAAKFAM YIDYAPIKNMYMQLHYVHTGDRNRFNTTDKGKYNEGEGKVSSINLLNFSTGISLKDWELN LGISNLLNNTYYTPASMLMARDAEYAHADGRKITLTATFKY >gi|281304599|gb|ADEF01000065.1| GENE 4 5740 - 6327 156 195 aa, chain - ## HITS:1 COG:no KEGG:BF1750 NR:ns ## KEGG: BF1750 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 7 193 9 193 193 154 42.0 1e-36 MNKTYRDLIYRFQNQGIEESQSTGAILIGKAPHIAPEAWLNTLYPPLSKNDVQALEKELG MEIPIDYKKFLLDVSNGLDILVGTFCLDGLRRNYKRSTDESRQPFSIITANIRERPRNAA DDHFFIGSYDWDGSYLYIDKRTSTVHYCDRDDATSLFQWETFEQMLISELKRIYSLFDER GRKIDENLYTTPIKR >gi|281304599|gb|ADEF01000065.1| GENE 5 6776 - 6916 58 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKYVLLSFGFFLVQNVSSFSRVARYTPSLSCILTSKISSKSNKANL >gi|281304599|gb|ADEF01000065.1| GENE 6 7009 - 7173 183 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDKKKTYMQPITTILDAEPMEIICTSVIASDEATLSTDGFEEGGEYEAGEVYW >gi|281304599|gb|ADEF01000065.1| GENE 7 7186 - 8931 1614 581 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881493|ref|ZP_06290163.1| ## NR: gi|282881493|ref|ZP_06290163.1| hypothetical protein HMPREF9019_1606 [Prevotella timonensis CRIS 5C-B1] # 1 581 1 581 581 1076 100.0 0 MKKKIFYVLMIACIGMTAVINTSCSNETDLVANGQQEKAGPKGVLISFGLSAEDYGTDNE AATRGVSDAQTGRVIATSTSNLGNGLEVLTEVVEDNAPKTRAGSQPVPKQDYHILAYKDG EKKAEWYGNSKDGRNFINYDESPKVQYLEPGTYKFYVFNHSHMTISKEDGTFTTNIKNGS RNAFYAEKDIEIPNQKEYKLEFVLKPMFARVRTKLKVYVENGLNGFFNGYATYKAGTRYG KIINPKTGVTTYTTAPEDGRLFYGKFDPIKTKAEGEKNEITSYSIISSEISGNFFLEGTM LSEVSFEIDKGSSATIFGKPAGGTNGTIMPTKLKKDVKLEAGKSYTLVYTMYKLGSYLFS DGTVTSLAEGTSKGKKPVGFVVDEKKRIAIALKNAGGDKKQWATSKSKIATTLWDQNEQS LRDGITEYNGGNLERGGYKETWDTNKTLNNEKRADKKECPAFTAIKELTSVNGKNWYVPG VGDWALALKLFGIDDPAAGYTPGNPKVNPWSKATTQGLGYNYQKIVFEQAHGTPLDKWYW TANQWNASNYNAITLTTNAEGARFGGATLTSETYVRPFINY >gi|281304599|gb|ADEF01000065.1| GENE 8 10207 - 10347 82 46 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYVLLSFGFFLAQNESSLSRVARYTPSLTYILISKISPKSNKANL >gi|281304599|gb|ADEF01000065.1| GENE 9 10516 - 14529 3111 1337 aa, chain - ## HITS:1 COG:TM1193 KEGG:ns NR:ns ## COG: TM1193 COG3250 # Protein_GI_number: 15643949 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-galactosidase/beta-glucuronidase # Organism: Thermotoga maritima # 40 1111 7 984 1087 539 33.0 1e-152 MKLRTIILCLLASLGLSSMADNQLLEGFEYGNASSPTGKEWQSPEQLSYNKLQPRATFSS FATVEEARKFLPENSSYRMSLDGEWKFHFSKNPDERPVDFYKTSYSTQNWDNIKVPGSWN MQGVQKDGSLKYGVPIYVNQWVIFKYNIAVDDWRLGVMREPPKNYTTYKYRNEVGSYKRT FTIPNHWDGREVFVSFDGVDSFFYLWINGQYVGFSKNSRDAARFDISPYVHAGKNDIAVE VYRSSDGSFLEAQDMFRLPGIFRSVAVYATPKVHIQNLVVKPTFKNGKGALNIVTTVENL NKKAAKNYNISYQLYENKLFGDENKLVSTMLSSQPMNLKSGTCMSVNDDFEFNNVKPWTP EEPNVYVLVAVLKDKKNKVAEVVSVQTGFRTVEIKDTPASEDEFNMAGRYFYINDQPLKL KGVNRHDTNPTTGHAISREQMFQEIMMMKRANINHVRTSHYPNDPYFYYLCNKYGIVLEG EANIESHEYFYGKESLSHPKEWRKAHVARVMEMVQSFINEPSIAIWSLGNEAGPGKNFVA AYQALKSVDLTRPVQYERNNDIVDMGSNQYPSIDWVRTAVKGKMNIKYPFHISEYAHSMG NAVGNLQDYWDAIESSNYFMGGAIWDWIDQSMYNYTKDGQRYLAYGGDFGDTPNDGQFVM NGIIFGDMKPKPQYFEVKKVYQNVGITWAEGQTDVLDIFNKNYYSDDLSSYNVGWTLYED GIEVKHGVINLGKVQPRHHQLVQLPGLRESLDANKIYQLIVRFQLKEDMPWAKAGYIQAD QQLEVQKAQQRPLLTSTMGVPQQAPKVNDQATQITVTGKNFSVAFDKAKGSICRLSYQGK PVIKEDNGPQLDAFRAWVNNDNWAYQAWYENGLHDLQHKALSYKMVKHKDATISLYFNIE SQGAHCAKLEGADKNWKKLVEQDKRPDFKFTTDVIYTIYPDGSIESQSSISSNRPQLTLP RLGYVLKLPSSFRKMMYNGRGPVGNYPDRKTSQHIGIYTQPDVNNEMVSFPKPQDMANHL DTRWVALQSEDGQGVLFASTNEQGMVFSALPYSAQQLAMANHPHELPTSDGIYLHLDVAI TGLGGNSCGQGGPLEKDRVKAGTHTFGYVIRPIQDMSKEHLNAMGLIRSSSELPLTMVRN NTGTVTISSQHPTTIYYQLNGKGKAMKYTNAFALPQGGQVTAWQSGSALRYTQKFEKMTT VPVTLKFASSVESGEGDAEHLIDGNPNTYWHTMYSVTVANYPHWFELDGGAVKTMTGFTY LPRQDSWNGLVKDYRVEVSQDGKTWTQIGSDGTFPKTKALQRVMFNKPVKARYLRFTALH SHDGQDFATCAEFTILN >gi|281304599|gb|ADEF01000065.1| GENE 10 14777 - 15643 687 288 aa, chain + ## HITS:1 COG:YPO2672 KEGG:ns NR:ns ## COG: YPO2672 COG4413 # Protein_GI_number: 16122877 # Func_class: E Amino acid transport and metabolism # Function: Urea transporter # Organism: Yersinia pestis # 1 277 21 319 330 99 28.0 8e-21 MQMMKSIFRGVGQVMFQCNALLGALMLVGIGCNSLLMCLFALAGSAIGTCTAVALRYDAG RIRDGLYGFNAALVGIAVPCFMPIHVASVLLMVVACVLSALVTRLFERQRLVPALTAPFV LITWAMLLLGHIFPQLQLPATTAADTAESFSLVRAASLSFGQIMLQGNSLLTGLLFFLAI CVNSRKMGIESLVACALCLAVVCVPGVSTTSVNNGMYGYNAILAVLAVANILDIGSWTYA KTLVALILSLLMQYAGLHMGLVTLTAPFVLSVWLVVLYHTFVVKTKQD >gi|281304599|gb|ADEF01000065.1| GENE 11 15647 - 18262 2434 871 aa, chain + ## HITS:1 COG:no KEGG:PRU_1227 NR:ns ## KEGG: PRU_1227 # Name: not_defined # Def: putative thiol protease/hemagglutinin PrtT # Organism: P.ruminicola # Pathway: not_defined # 71 360 74 344 777 165 35.0 7e-39 MKIKRWLSPTLWGIVLATTVSIPTLGKIVTVDKSISIARKYVNVSLSERHATRASHGTPP YYIYNDRHGRGFVVVAGDDAMGQVLGYSHTGTLDTLRASGELKFLLSAYRDAFHQLQRQP STRATVTTTPPNRKEVAPLLTTAWNQDDPYNRLTGYNYTGCVATAVAQIMYYHRWPERGK GSYSYVVRSDNRTMSVDFSESVYQWDKMLPKYNTRMTLDNAEACEAVALLMRDVGVSVNM QYSPTSSGAQTFMAAKALKTYFNYSTSMLNKSDEGAAAFTQILRKEIENGFPVYISGSVK SGGSGHAWVVDGVDKDNLFHMNFGWGGGGDGYFSVTALNLSTTGQEFGGKPLSFNKQVQI VLVHPNKPESAPIDAELADDAPNLCFNSEGNMTVVGGMPTNKRQPMTVSYHHFKNQADGT FAGDIGLGVYNEQGKQLKVVPSEWHDKGGYTAERGKYNGGVLQSGQLIDDACTFMVNLED LADGRYYLQAVCASLKDKDTYGAWCRMKTAPRIAFQVQGNDVRLFEKPDDKAPFALASHP YTLKPCTSGNKATLCLSIRKLTGTPFDGTVRVSLVDDDNRVVATGQTAEVVDFEMFAETK VRVDMHLPDHLQSKEYKLKVEVIKQDDTGNIATVGMVHGNEPSTLQVNAAKPSDKLFVKL QGMVQDNSGSSISPTNVDLSGNPSLKIGVVMTLAPQATYNGKLTLCLIDTKTQRRISLGG NAQKRYDLSGGDVEIFITGWLKNKDNLCVINNRTYRLALMGMVDGMECDLWNENCAPFEV SFMNSIYNVYPGETTNIDATQSSLRMMRSGNWIDVQGEDLAHVQVFALNGTLIASSDAHG QHTVRLHVPSTQMVVVRVKTLHGNTLTKKLR >gi|281304599|gb|ADEF01000065.1| GENE 12 18449 - 19801 934 450 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881499|ref|ZP_06290169.1| ## NR: gi|282881499|ref|ZP_06290169.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 450 1 450 450 922 100.0 0 MIKRVYIQLLALIAILCYPNSLRAGDYSLAPSTGRKVYVPIHANSAKAQLLITNYGRDEV RDFDYKVSFEGKVLLEGKYFLKEPLKRMEGTHANIDVPPHDHLSETELQVEITKVNGEPN RASYPYAGLIRATVTQVPHRRVVVEEYTGMWCQYCPRGIAVMENLEKNYPDDFIGIAIHR RPDPLSCPDYAWNSFEAKGTPHLDMNRSRLLSNFTATTEFEEERAMGADMDVNVTAQWDE KKERITVTPSVTFRVVPKDTKYSVAYVLTEDGMTKPEWLQNNRYSGDNSVLGKSPEMDKF VNSPSVVSGILNNFTAIAAEGVYIPAREGKVQGVYTPGPEDFVKTPIEVDQTQSFQHVFN IAYNRLLQDKSKLKICVLLINNNTKKIENAAKCTITDAGATGISTVTEEHGNNTETARYT LNGRRIQAPQRGINIVKYGDGRVRKEIVTR >gi|281304599|gb|ADEF01000065.1| GENE 13 19832 - 20509 523 225 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881500|ref|ZP_06290170.1| ## NR: gi|282881500|ref|ZP_06290170.1| hypothetical protein HMPREF9019_1613 [Prevotella timonensis CRIS 5C-B1] # 13 225 13 225 225 418 100.0 1e-115 MKLRLLGFLSLLACTFAGVQAQTSSDDVVFVNAKGDAIAPDATLNVNKVEDDVFTPGQKQ MHAELSISNRSGKSQKVKLSYNIEMQEGLLEVCAFESCNSHEEAGTYQLESKDMAATNRK ELSIKHTFATKGHGKIVLQIIIMEDEGNGKMTEKNGPKLTINFMPETAGIASSPIPAGGI YDIYDTNGVLRYQKLTSLSTLPKGTYIVKYRSNQGVIFTRKYIIS >gi|281304599|gb|ADEF01000065.1| GENE 14 20532 - 21320 422 262 aa, chain - ## HITS:1 COG:no KEGG:PGN_0122 NR:ns ## KEGG: PGN_0122 # Name: not_defined # Def: 28 kDa outer membrane protein Omp28 # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 1 262 1 286 291 109 30.0 8e-23 MKSLYILLLAGVSLLTSCDPIDADKRLIEVPAATIQRNVLIEDFTGQRCIFCPEAAETIA KLQATYGADKLIAVAIHAGPLAVKTTSTIVGLRTDAGDAYYKYWAIPNVPKAIINRRGGV LSKDAWSGKVYDEFNKTTNVNIELKCQYDADTRLVEIETNLNTLTTAVKGQLQLWLVEDD VVAPQLFPNNKLKKNHIHHHVFRAAVNGEWGTKLTLSPEHAHKEKTTYTLPNGILSDKAW IVAFFYNDNGVQQVVRKKISNP >gi|281304599|gb|ADEF01000065.1| GENE 15 21335 - 22951 1259 538 aa, chain - ## HITS:1 COG:no KEGG:PGN_0121 NR:ns ## KEGG: PGN_0121 # Name: not_defined # Def: hypothetical protein # Organism: P.gingivalis_ATCC33277 # Pathway: not_defined # 5 538 34 581 581 441 44.0 1e-122 MLGWLIGMASTWLCAQEQSDKLRLSGSLQSDILLPEKDKTTGASTDDDHFLTNTYLDLKA TSRYVEAGARLEYLKHPLPGFENDIKGWGLPHFYVTGRYKNAELTLGSFYEQFGSGFIFR TYEERSLGIDNSLQGARLSYRPWDGVAVKILTGRQRRYWNHNDSWLTGGDIEWNIDEWLK GLQKHQTYAMIGFSYINKYEKENVVMTDPTHRLRLPRYVNAFDVRLRVQHRSLNVLAEMA MKTQDPSNDNGYIYRNGYVAMLSGSYSKRGMSLLLQTKRSTNMAFRSSRGMEGTSSFINH LPAFTIEHTYTLPALYPYATRPDGEWAYQAAGAYTFPKGSMLGGKYGTMVKINFSHVHSI SKNEDGGRGTNGYGSSFWGWGASTYYQDIDVQLEKRLGKDTRLNLMYMNQRYNQTVIEGH GGMLNSHIFVADVKQKLARKTTLRVEGQYLFSKDGDKDWAFALAELSLAPHWMFTLSDLY NLGNTHVHYYQGFVTYSGGAHRLQLGYGRTRAGYNCSGGVCRYIPATKGLTLSYNYNF >gi|281304599|gb|ADEF01000065.1| GENE 16 22974 - 23543 441 189 aa, chain - ## HITS:1 COG:BH2868 KEGG:ns NR:ns ## COG: BH2868 COG0526 # Protein_GI_number: 15615431 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Bacillus halodurans # 35 170 37 170 184 78 30.0 8e-15 MFQHYIIKTSLLPVCCAAKSSVWIAPVRKILFSFALLVVSLGNHAQERLPKVILKDMEGR TVQTDTIANNGKPLLLAFFATWCKPCNRELKAIAELYDEWQQETGMRLIAVSVDQAQNIN KVKPLVDQNVWQYDVLLDPNSELRHALGIQLIPYTVLLDGQGNIIYRHNGYTDGAELELY EKIKEIASK >gi|281304599|gb|ADEF01000065.1| GENE 17 23898 - 24812 773 304 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881504|ref|ZP_06290174.1| ## NR: gi|282881504|ref|ZP_06290174.1| hypothetical protein HMPREF9019_1617 [Prevotella timonensis CRIS 5C-B1] # 1 304 1 304 304 558 100.0 1e-157 MKKVLFLTYLMLMSIGLHAQNETVTNQTVLDLLKEGFSSKEIIGAIDNSSTRTITFDINF MRQLKAAGANADLTTYLQKIAKKDMGYEGVYLWNAANGKPEKLYRTNFEKESKGVNFGAI GAAALGTYVAGSVFGGHIPSGGEAAAVAAGTSILMTSAKDIKKLMLPGTKAKTTTSTQPV FRFYFNHNSDDSFKQNGGNFYELVMNDIMSPNEFQCVKMTVKAKKKGGRRIFPDNMSYTV IGFEGSNASSRVMVDFTIKTINNTTFEVSFPQPLEPGEYVFFYKNGLNNQYFKTAPFGFD FSVE >gi|281304599|gb|ADEF01000065.1| GENE 18 24861 - 25310 296 149 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299141644|ref|ZP_07034780.1| ## NR: gi|299141644|ref|ZP_07034780.1| hypothetical protein HMPREF0665_01225 [Prevotella oris C735] # 1 149 1 149 149 155 51.0 6e-37 MNKLKLFIAGIMMCLATTGSAQTKVNDAHDYYMYSWIQVRGANKANGDPCFVILMSSGNG TNFKPSILKNEVGRTVVFNSQIDGLNYLTLQGWELFEPRTEAKISNWIARKKVSREILAQ SVNSNTFYLDETPKIQLDLAEQAAHIDYK >gi|281304599|gb|ADEF01000065.1| GENE 19 25374 - 25523 123 49 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|299141643|ref|ZP_07034779.1| ## NR: gi|299141643|ref|ZP_07034779.1| hypothetical protein HMPREF0665_01224 [Prevotella oris C735] # 1 49 1 49 49 75 87.0 1e-12 MLDLIASALIMGVGLKAIVGGDTGRKRGKKNSNYKDAMGWSHDNHKKLF >gi|281304599|gb|ADEF01000065.1| GENE 20 25910 - 28129 1537 739 aa, chain + ## HITS:1 COG:no KEGG:PRU_0795 NR:ns ## KEGG: PRU_0795 # Name: not_defined # Def: OMP85 family outer membrane protein # Organism: P.ruminicola # Pathway: not_defined # 25 739 2 703 703 828 56.0 0 MQLLKQIRLAIYFAIFILITSCSSTRFVPQNEYLLKEVQIKSDQKGFDAASLEPYIRQKA NSKWFSLFKIPLGTYALSGRDTTKWVNRTLQKIGEKPVIFDTLQARLSQKDLKTALQNAG YMHAEVSFDVKTKGKSLTAIYTLHPGKPYYINSVTYDIQDQQIQRVLALDRPENAALGLK AGSRFTVDRLDEERERITKLLLDSGFYKFHKDFIVFEADSTRQRTGVNLIVKLLKYRANS DAPITNHPRYTIRAIHYTSKDSTKINLRPSVLMYNTALIEGEPFSASKLQQTYLNFAKLQ AIQYTNIRFRELPDTTLLDCDIQLSQQKPRTISFQPEGTNTAGDLGAAVLFTYENRNLFR GSEVLSLQLRGAFEAITGLEGYNDQDYQEYNAEAKILFPRFLAPFLSHSFRRQRSASSEI SLSYNLQNRPEFHRRVFSSAFRYRWSEPHHHLSYRLDLIDLNYVHMPWISDTFKRDYLDS VSNRNAILRYNYENLLLMKIGFGVTYNDGQHAVIANIETVGNILGGVAKPLGFKKNEEGQ YKLFNTAFAQFVKGDIAYTRLIAFDPNNSLALHFGLGIAYPYGNSKVLPFEKRYFSGGAN SVRGWSVRELGPGSFRGTDGRIDFINQTGDMKLDMNAEFRTKLFWKLNGAAFIDAGNIWT LRDYKEQPGGQFKLDQFYKQIAVAYGLGLRLNFGYFILRFDMGMKAINPAYTSNEEHYAF LHPNLKRDFAFHFAVGLPF >gi|281304599|gb|ADEF01000065.1| GENE 21 28275 - 28739 553 154 aa, chain - ## HITS:1 COG:HP0866 KEGG:ns NR:ns ## COG: HP0866 COG0782 # Protein_GI_number: 15645485 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Helicobacter pylori 26695 # 2 152 4 154 164 109 41.0 2e-24 MEYMSQEGYDKLVAELKQLETIELPRVRDAIAEARDKGDLSENFEYHAAKREQGRLLSRI RFKQKVLEFARVIDTSRLSADKVGLLSKVTITNLGNKAKMTYRIVSAHEANMREGKISIH SPIAQALLDKKQGDEVTVRVPAGTITLHIDEVEL >gi|281304599|gb|ADEF01000065.1| GENE 22 29342 - 30298 685 318 aa, chain + ## HITS:1 COG:no KEGG:Rcas_0326 NR:ns ## KEGG: Rcas_0326 # Name: not_defined # Def: hypothetical protein # Organism: R.castenholzii # Pathway: not_defined # 20 314 2 292 293 138 32.0 2e-31 MTNNYTPLQEEDNSSFVSDSQHNWGGPWTEEKLDAFEKYVNAYLTIMNKYRDKFNWKLLY FDGFAGSGTRNSNHESDSELMMELFKEQDISLEQINVYQGAAERVVSIKQQGFDYYYFVD LDKSANDELKEKLQPYSDQGKKLIFRNRDANSIVKEMGKYLADHKNKFKGLVLLDPFGMN LDWETIASLKDASIDLWILVPSGVIINRLLERDCTLRHIEKLKQYFGLTKAEIENRFYTM RKDQTLFGEIEKKEKVKEPIKRIAELYVERLNTLFPYVTPDPLVMTNRLGVPIFHFVFAS HNETAMNIAQQIISKKSK >gi|281304599|gb|ADEF01000065.1| GENE 23 30295 - 31032 432 245 aa, chain + ## HITS:1 COG:SMa2239 KEGG:ns NR:ns ## COG: SMa2239 COG4422 # Protein_GI_number: 16263660 # Func_class: S Function unknown # Function: Bacteriophage protein gp37 # Organism: Sinorhizobium meliloti # 1 240 1 253 259 229 47.0 4e-60 MRTTKIEWTDKTWNPITGCTKKSAGCAHCYAETMANRIRNMGLDKYRNGFKLTLHESALE EPLNWKKGHNIFVCSMSDIFHEEVPFEFVDKMMATIRKTPQHRYQILTKRAERMKEYFSS REILQNVWLGVTVECKATKFRMDFLRDLHASVKFLSCEPLLEDLGEMDLKGIDWVIVGGE SGPKARPMKLAWVTNIMRQVESQDGAFFFKQWGTWGSDGVKRNKHKNGKLIDGRVIQEMP LTKTV >gi|281304599|gb|ADEF01000065.1| GENE 24 32084 - 33388 869 434 aa, chain - ## HITS:1 COG:no KEGG:PRU_2258 NR:ns ## KEGG: PRU_2258 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 432 1 384 390 167 31.0 1e-39 MKHDNWIDDLQKRMAQHQEPVETDLWTGIEKQLTNPPYTKHTTHISLWRRYAAAAVICIA LLGGAAYVLFHQQTSTPSLAVQTSRQPSANANQQTYMESKATSMAQEQQPTTALTPLIAT TGTSTSQSSVAASQAKQQAQCEETLLANVSKDVASADNSGTSQPSIETFSSAEPATQQPN TQAQSVTTTPTEQAMNKQAAQRTRTYATHHQTTTSGHNSTLSMNLYASNALMSYSTSNPI HAAQPVMMYNDYFMSKAYTLFADDVSPILNQTHEEVVHHQPISLGLSFSIPLQPRLSIST GVVYTKLQSDFIQTMGTTRFTTQQTLHYVGVPVNISYAFWQNKHLRTYVMAGGQVDFNVK AQNTKEGVTQDIKKTAQQWSSQAALGIQYNVTPHLGAYLEPGLKYYIPQHQPLNMYWKDK PLQFNLQIGVRWQY >gi|281304599|gb|ADEF01000065.1| GENE 25 33385 - 33945 463 186 aa, chain - ## HITS:1 COG:SMb20592 KEGG:ns NR:ns ## COG: SMb20592 COG1595 # Protein_GI_number: 16265252 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Sinorhizobium meliloti # 1 177 1 187 227 72 26.0 4e-13 MPLVETEKQLLTAILNGNQQAMRQLYERYCGYAMTVALRYIPDRDAVQDVLQDSFVKAFS AIQRFKYRGEGSLKAWLMRIVANQSLTYLRENQRLQLTNDLIDVPDDEQENEVDTRQLPI DVLLKMIQQLPDGYRTVFNLFVFEQKSHQEIAHTLGIKENSSASQFFRAKNMLARMINDY KRKSNL >gi|281304599|gb|ADEF01000065.1| GENE 26 33926 - 34549 405 207 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881514|ref|ZP_06290184.1| ## NR: gi|282881514|ref|ZP_06290184.1| hypothetical protein HMPREF9019_1627 [Prevotella timonensis CRIS 5C-B1] # 1 207 1 207 207 371 100.0 1e-101 MQDFFILTLLEYKTIQQMRPLFYLFIGILLTACTSYNDDALSESLYSSNRQVPSYFGKYQ GIWTYQGKQIGTAQLELGVQQSYTYIPLLPDAKVAIMRKLGLTTLQVVPTNAYHVLYQET GYSATTIYMVALPSDYTYSFTANGKSHSIQIIIQKGNAASAYNEQNETFSSVFYIEAVKV DNSTIINYKKPQAVQFHTLKKSATGGN >gi|281304599|gb|ADEF01000065.1| GENE 27 34630 - 35259 405 209 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881515|ref|ZP_06290185.1| ## NR: gi|282881515|ref|ZP_06290185.1| hypothetical protein HMPREF9019_1628 [Prevotella timonensis CRIS 5C-B1] # 12 209 1 198 198 393 100.0 1e-108 MFRYLVTMLLLMGIRLGVQAQEAPQKGYPYERTELSMGIALHNSYGNEYDSNYPSPLLNR ETPMDDYHAGKFYIDEMKSSPTVWVNIFHHISKHWAVGLQGCYGYSMCQRYRSLTAQKDG KLDLHDFIALWSLRYYYCIHQKYSFYSGISLGFNKQLYKHYDASEYSAKTHMIKDATIFG FMVGTKFYGFSEITTNVRGLLRAGVGYRW >gi|281304599|gb|ADEF01000065.1| GENE 28 35358 - 36254 511 298 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881516|ref|ZP_06290186.1| ## NR: gi|282881516|ref|ZP_06290186.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 298 1 298 298 562 100.0 1e-159 MKTKLFISILMVTATILAGCQWEEEDYDQWHKTKAGRTAYLYMETNMKSLTNIVAYAQMF RQYIRQTTVEGRDSVNALYFRNIKILRERDLQHNQFFYNMLVKNEYGQILYIISFFNTSS TDWKIDAAVSSGDGKLYYHLQVKDVDANQWTIEKSWSDAKESTVVKSDSTDATNVCNRLS RTAFFMKNKPLTVTWSSYSDYPHFALKGEGELESCATPQLKLLYSITQPLEVITLPKYLD AKNIRSSDASQTYVSSYEGDLRLIAIDTIDRTTDTYDITLTYDEIYIKMNDIKEIWQR >gi|281304599|gb|ADEF01000065.1| GENE 29 36274 - 36720 392 148 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881517|ref|ZP_06290187.1| ## NR: gi|282881517|ref|ZP_06290187.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 148 1 148 148 305 100.0 6e-82 MIVFMGLSIHPQITSYQPYLIMKLYQLLQAYDFDELMPVINDMFPGTSKFRPELKHAYEL LLSMQPVASKKAIRYKILPGDTANHSYVGAEDTCFNATWEVCLGKDVSRERGVDLSDIEL VANSLVNLCLQAKYPKVFEKDHQTLLKG >gi|281304599|gb|ADEF01000065.1| GENE 30 36751 - 37227 452 158 aa, chain - ## HITS:1 COG:SA1586 KEGG:ns NR:ns ## COG: SA1586 COG0054 # Protein_GI_number: 15927342 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Staphylococcus aureus N315 # 21 158 11 148 154 137 47.0 8e-33 MSTTLHHLSDYDASKVPDASNMCIGIVVSEWNSEITGALLDGAVSTLEKHGALPENIHVK TVPGSYELVYGAHQMVLNGGYDAVIILGCVIRGETPHFDYICQGVTNGIATLNSKSEIPI IFGLLTTNDLQQAKDRSGGKLGNKGDECAVVAIKMAKF >gi|281304599|gb|ADEF01000065.1| GENE 31 37232 - 38011 880 259 aa, chain - ## HITS:1 COG:no KEGG:PRU_0202 NR:ns ## KEGG: PRU_0202 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 40 258 35 244 246 214 60.0 3e-54 MAWDVILARFMPKDENRKNKYKYYHKMANKQVKGVEETNEALTKSQAFFVKNKKAIIISA AAIVVIIVGIFLYSAYVQKPRAEKASTELGKGQQYFNAGDFEKALNGDKVNYNGFLKIAS DYSSTDAGNLANLYAGLCYANMDKWNEAVQYLDKFNGKDDAMISPAALAALGNAYAHVNQ LDKAVSTLKKAAEKADSKAEGKVNYSLAPTFMMQAAEILESQNKKEEALKIYQDIKKKYI NSAVVQSSEIDKYIERASR >gi|281304599|gb|ADEF01000065.1| GENE 32 38147 - 39259 936 370 aa, chain + ## HITS:1 COG:BS_recF KEGG:ns NR:ns ## COG: BS_recF COG1195 # Protein_GI_number: 16077072 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Bacillus subtilis # 1 365 1 370 370 166 30.0 7e-41 MLLKKISILNYKNIEVADLEFSSKLNCLIGHNGEGKTNLLDAIYYLSFCRSAFNPIDSQL ILHGRDFFSLQGTYLRDDGDEELIHCGLKRGTRKRFKRNDKDYKRLSEHIGLIPLIFVSP SDTILIEGGSEERRRFLDMVISQLNRTYIEHLSRYNKALAQRNALLKNEDAPDLSLLEIL EQEMAVQGEAIFAIRQSFIEEFIPVFQSIYDSISGHHEEVSLQYISHAQRGPLLDVIQRD RMKDRAVGYSLHGVHRDDLQMMIGDYQMKREGSQGQNKTYVLALKLAQFDFLQRTSSATQ PLLLLDDIFDKLDAERVERIVDLVTSTTYGQIFMTDTNRAHLDRILSSHSFDYKLFVVNN GDIVENRGSK >gi|281304599|gb|ADEF01000065.1| GENE 33 39373 - 39663 284 96 aa, chain + ## HITS:1 COG:no KEGG:PRU_0200 NR:ns ## KEGG: PRU_0200 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 94 1 94 96 105 56.0 6e-22 MFKRQVQTLDEILQKALREGGLETPLRQRRLIDAWSEVVGQNVNAYTGEKFIRNQTLFVK IKNPALRQDLSMMRSQLVKRLNAAVGAFVISDVKVY >gi|281304599|gb|ADEF01000065.1| GENE 34 39822 - 43712 3125 1296 aa, chain - ## HITS:1 COG:SSO3022 KEGG:ns NR:ns ## COG: SSO3022 COG1501 # Protein_GI_number: 15899728 # Func_class: G Carbohydrate transport and metabolism # Function: Alpha-glucosidases, family 31 of glycosyl hydrolases # Organism: Sulfolobus solfataricus # 437 749 376 684 731 138 32.0 9e-32 MNILKNKKHLLGYSLAIALLITGSKNNTICAGNKPLTAPQAQTNVSTNKNAVISRAVQIN PTTVEVYDTDGKHITIDFYANNIFRLFRDDTNPVVRNPQATPPAEILVNNPRLPLTDFTL KDKGNNIIISTRNVTLSIDKKDGKMNVTNNLNGKNALEDLMVADINAQGTTVTMKAHTDE YFFGGGVQNGRFSHKGRSIAIENTNNWVDGGVASPTPFYWSNKGYGVLWHTFKPGRYDFA AAQPQQVKLHHQEAYLDMFVMVDETPVALLNDFYQLTGHPVLMPKFGFYEGHLNAYNRDY WKEDPKGNILMPDGKTYKESQKDNGGIKESLNGEKGNYQFSARAAIDRYVKNDMPLGWFL PNDGYGAGYGQTNTLDGNIENLRKFGDYAKANGVQIGLWTQSDLHPKPGIEPLLQRDIVK EVRNAGVRVLKTDVAWVGNGYSFGLNGVADVAHIMPYYGNNARPFIISLDGWAGTQRYAT IWSGDQTGGDWEYIRFHIPTFIGSGLSGQPNITSDLDGIFGGKNPIVNIREFQWKTFNPM GLNMDGWGSNPKYPDALGEPATSINRHYLKWKSQLMPYTYSIAHQAIDGKPMIRAMFLDD PNPYTLGTSTEYQFMYGPSLLVAPIYKDTQMDKEGNDIRNRIYLPEGKWVDYFTGHTYQG GCIINNFESPIWKLPVFVKANAIIPMTNANNNPTQIKKDLRIYEIYATPNNESHFEEYDD DGNTQAYKCGEYVTTDIHAETDGKQNLTITMEPTKGAFKGYEPNKQTLLRINVSQQPKKV TAKVNNRSIRLKWVNNLQEFDASDNACLYLKEPNLNQFSTTGSQMQHVQMTKNPQLLVKI AKTNVSQNKMVVKVKGFDFNITLPALAQHTGSLKAPLPQIAQKSIGAFSLTPTWEKTANA DYYEILFNGMTYSTIRQNQFTFNGLQPEQTYSFKIRAINKDNQSEWQDFIGKTKADPLQF AIKGIKAQATCTNQPGQGTDKLFDFDEKTTWHSKWGKGEAIPADLIIDLKSVNTLDKLEY LPREDAGNGTLLQGTIAYATNRQSWSNPTAFEWKQDGECKTFTFKEKPQARYLKLQLTKA VGNFASGQEMYVFKVPGTESTLQGDINRDKFIDENDLTSYMNYTGLRKGDSDFDYIKIGD INGNGLIDAYDISCVATELDGGVRNSNDKVDGKLVLVPNKKRFQAGDIIEVKVVGKGLHY VNALSFALPYNTNEYEYVGTQLLNMKDMVNLTYDRLHTNGQKELTPTFVNRGNNFLLDEG DVELFIIKLKAKRAGTFNLKANDGMLVDRNLGCVTF >gi|281304599|gb|ADEF01000065.1| GENE 35 43744 - 44301 421 185 aa, chain - ## HITS:1 COG:YPO0913 KEGG:ns NR:ns ## COG: YPO0913 COG0212 # Protein_GI_number: 16121218 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Yersinia pestis # 4 179 9 190 198 102 34.0 3e-22 MMVMDKQTLRKQIRQLKRTFTPEQLRQMSTPITATLLEHPRIKAANTILLYASLPDEVDT HCLIEQLLVQGKNILLPVVVGDHDLKICPYKPSSQVAQGPFGIMEPQADAFTAFDEIDVA LIPGMAFDKQGNRLGRGKGYYDRFLSTVPHLYKIGVCFPFQQVTEVPADENDIRMDEVVV STNNI >gi|281304599|gb|ADEF01000065.1| GENE 36 44348 - 46045 1594 565 aa, chain - ## HITS:1 COG:aq_797 KEGG:ns NR:ns ## COG: aq_797 COG0793 # Protein_GI_number: 15606169 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Aquifex aeolicus # 9 358 6 346 408 211 37.0 3e-54 MNNKKSNRFMPLMMALCVVIGIIVGSFYSNHFSGNRLSIINTGTNRINNLLHIIDDQYVD KVNLDSLVEDAMPKILTELDPHSVYISAKDVEAANQDLQGSFSGVGIQFVIRQDTIHVQN VIQNGPAERAGILAGDKIVMVDDHTFVGKAVTNQEAMRRLKGPKNTKVKIGVLRYGHSKP QSFVVTRGDIPIKSVSATYMIDDKTGYIRIKSFGETTYAELLVALAKLGESGFQNLIIDL RDNTGGYLQSAVQMANEFLPKNKLIVYTEGRKSPRQDFRSDGRGSYKQTPLVVLINEGSA SASEIFAGAMQDNDRATVIGRRSFGKGLVQKQIEFSDGSMVRLTIARYYTPSGRCIQKPY VHGETDDYAQDLMSRYEHGEFFSQDSIKHTGPKYHTSNGRVVYGGGGITPDIFVPEDTTG FTSYYKQATMSGLILQFAFTYTDDNRPKLNNFKEMMELADYLKKQNLVDKFATYANDKGL KRRNLMIRKSHYLLDRFINSRIIYNMLDEQAWLEYVNEDDATIREALKTFRNNAAFPKAP AKRVAKATSLQRQPEIRQMPQIYQA >gi|281304599|gb|ADEF01000065.1| GENE 37 46133 - 46555 363 140 aa, chain - ## HITS:1 COG:AF1764 KEGG:ns NR:ns ## COG: AF1764 COG2131 # Protein_GI_number: 11499353 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Archaeoglobus fulgidus # 6 139 2 146 157 118 43.0 4e-27 MITKDKQHQLDQRYLRMARIWAENSYCQRRQVGALVVKDQRIISDGYNGTPSGFENQCED EQGVTHPYVLHAEANAITKLARSSNNSDGATLYVTASPCIECAKLIIQAGIKRVVYGEKY RLDDGLNLLKKANIKVEYLE >gi|281304599|gb|ADEF01000065.1| GENE 38 46629 - 48713 1930 694 aa, chain - ## HITS:1 COG:XF1944 KEGG:ns NR:ns ## COG: XF1944 COG0339 # Protein_GI_number: 15838538 # Func_class: E Amino acid transport and metabolism # Function: Zn-dependent oligopeptidases # Organism: Xylella fastidiosa 9a5c # 29 693 50 716 716 461 39.0 1e-129 MFMKESMTEKAKQQNIFFETYHTLHHTFPFDKLRFEDYEEAFMEGIRRDNEIIEKTINDP EEPTFENTIARVDVSKGEEYYDLLDKVSTVFSCMLSAETNDQLDELAQKLSPILTKHAND VQLNKRLFERVQQVYHHHRELTPEEQMLLEKTYDSFVRSGALLNDEEKAQLRKLTEEASM LTLQFSQNLLKENKAYTLHITDEKQLDGLPDTARDAAAHTAKERNLQGWVFTLDAPSYSP FMTYSTQRDLRQQMYMARNTVGTHDNPENNLKICQQLVNLRREIAQLLGYDTYADYILKH RMASDTDRVYQLLNDLIEAYKPTAMQEKKSLEELARRLEGNEFEMQPWDTAYYSHKLQME RYNLDAEMLRPYFQLENVIKGVFGLATRLYGITFKENKDIKVYHPDVKAFEVFDRDGSYL AVLYADFFPRKGKQSGAWMTEFQGQWIDRKGKNVRPHASIVMNLTKPTATKPALLTLGEV ETFLHEFGHALHGMFANTRFESLSGTNVWWDFVELPSQFMENYAVEPEFLQTFAFHYETG EVIPHELIERIRKSRNFMVGMACLRQVSFGLLDMAYYTQRKDFHEDIIPFEKEAWKKAIL GKQLPNTCMTTQFSHIMAGGYAAGYYSYKWAEVLDADAFSVFKKNGIFDQKTAESFRQNI LSKGGTEHPMTLYKRFRGQEPTIDALLERNGIKK >gi|281304599|gb|ADEF01000065.1| GENE 39 49767 - 49895 77 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MMPKFAIYGHGFYAQDNCIFCIENRLLACMNRLLSYITPPRI >gi|281304599|gb|ADEF01000065.1| GENE 40 50151 - 50369 203 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881527|ref|ZP_06290197.1| ## NR: gi|282881527|ref|ZP_06290197.1| hypothetical protein HMPREF9019_1640 [Prevotella timonensis CRIS 5C-B1] # 1 72 15 86 86 137 100.0 1e-31 MKEITKRKYIRPEVTVIGLSDECPLLAGSDPATIVPPKKQEHETCNIDDYENWQDICVCD GDDCWYKEGQKP Prediction of potential genes in microbial genomes Time: Sat May 28 07:50:00 2011 Seq name: gi|281304516|gb|ADEF01000066.1| Prevotella timonensis CRIS 5C-B1 contig00008, whole genome shotgun sequence Length of sequence - 103672 bp Number of predicted genes - 91, with homology - 82 Number of transcription units - 36, operones - 21 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 902 773 ## COG2017 Galactose mutarotase and related enzymes + Term 980 - 1024 5.6 + Prom 1617 - 1676 7.3 2 2 Op 1 . + CDS 1696 - 2757 881 ## COG1044 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 3 2 Op 2 . + CDS 2759 - 4150 1180 ## COG0774 UDP-3-O-acyl-N-acetylglucosamine deacetylase 4 2 Op 3 . + CDS 4212 - 4982 721 ## COG1043 Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase 5 2 Op 4 . + CDS 4983 - 5885 659 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 6 2 Op 5 . + CDS 5927 - 8416 1938 ## COG5009 Membrane carboxypeptidase/penicillin-binding protein 7 2 Op 6 . + CDS 8416 - 10155 1165 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Prom 10501 - 10560 7.9 8 3 Op 1 . + CDS 10580 - 13654 1921 ## BF1326 hypothetical protein 9 3 Op 2 . + CDS 13682 - 15238 1129 ## BF3612 hypothetical protein 10 3 Op 3 . + CDS 15287 - 16297 608 ## BVU_0617 glycoside hydrolase family protein 11 3 Op 4 . + CDS 16306 - 16821 292 ## BT_1037 hypothetical protein 12 3 Op 5 . + CDS 16828 - 17784 668 ## gi|282881542|ref|ZP_06290211.1| F5/8 type C domain protein 13 3 Op 6 . + CDS 17818 - 21018 2459 ## COG4724 Endo-beta-N-acetylglucosaminidase D + Term 21069 - 21116 10.1 14 4 Tu 1 . - CDS 21929 - 24085 1300 ## BVU_4140 sialate O-acetylesterase 15 5 Tu 1 . - CDS 24869 - 26539 1314 ## COG0366 Glycosidases - Prom 26601 - 26660 3.5 - Term 26602 - 26653 13.6 16 6 Op 1 . - CDS 26679 - 27563 957 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 17 6 Op 2 . - CDS 27627 - 28775 387 ## PRU_2124 hypothetical protein 18 6 Op 3 . - CDS 28759 - 30006 1089 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 19 6 Op 4 . - CDS 30015 - 30245 297 ## BDI_3816 putative nucleotide-diphosphate sugar epimerase - Prom 30270 - 30329 1.7 - Term 30560 - 30613 2.2 20 7 Tu 1 . - CDS 30751 - 32163 1065 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis - Prom 32215 - 32274 4.2 - Term 32196 - 32231 -0.8 21 8 Op 1 . - CDS 32289 - 32936 437 ## COG1011 Predicted hydrolase (HAD superfamily) 22 8 Op 2 . - CDS 32923 - 33891 535 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 23 8 Op 3 12/0.000 - CDS 33903 - 34511 437 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis - Term 34797 - 34856 10.4 24 9 Op 1 25/0.000 - CDS 34866 - 36149 742 ## COG0438 Glycosyltransferase 25 9 Op 2 . - CDS 36205 - 37293 714 ## COG0438 Glycosyltransferase 26 9 Op 3 . - CDS 37303 - 38241 393 ## PRU_1531 hypothetical protein 27 9 Op 4 . - CDS 38238 - 39365 470 ## BDI_0029 hypothetical protein - Prom 39439 - 39498 5.4 - Term 39437 - 39474 1.0 28 10 Tu 1 . - CDS 39574 - 40428 166 ## COG3039 Transposase and inactivated derivatives, IS5 family - Term 40707 - 40747 -0.0 29 11 Op 1 . - CDS 40799 - 41662 401 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 30 11 Op 2 . - CDS 41659 - 42804 496 ## BSU34310 biofilm extracellular matrix formation enzyme 31 11 Op 3 . - CDS 42820 - 44022 578 ## gi|282881562|ref|ZP_06290231.1| conserved hypothetical protein 32 11 Op 4 . - CDS 44043 - 44990 622 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 33 11 Op 5 . - CDS 44974 - 45216 235 ## gi|282881564|ref|ZP_06290233.1| hypothetical protein HMPREF9019_0392 34 11 Op 6 . - CDS 45210 - 45641 128 ## COG3955 Exopolysaccharide biosynthesis protein - Prom 45662 - 45721 3.8 35 12 Op 1 . - CDS 45779 - 46873 432 ## BF2794 hypothetical protein 36 12 Op 2 . - CDS 46879 - 48081 252 ## COG1035 Coenzyme F420-reducing hydrogenase, beta subunit 37 12 Op 3 . - CDS 48078 - 49613 569 ## Dfer_0062 polysaccharide biosynthesis protein 38 13 Tu 1 . - CDS 49982 - 50998 208 ## Spro_0558 acyltransferase 3 - Prom 51018 - 51077 3.3 39 14 Tu 1 . - CDS 51338 - 51541 215 ## - Prom 51704 - 51763 2.4 40 15 Op 1 . - CDS 52027 - 53079 980 ## COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 41 15 Op 2 . - CDS 53084 - 53719 176 ## Nhal_3405 hypothetical protein 42 15 Op 3 . - CDS 53712 - 53948 113 ## 43 16 Op 1 . - CDS 54294 - 54497 205 ## 44 16 Op 2 . - CDS 54541 - 55782 737 ## gi|282881571|ref|ZP_06290240.1| conserved domain protein 45 16 Op 3 . - CDS 55833 - 57083 1657 ## COG1004 Predicted UDP-glucose 6-dehydrogenase 46 16 Op 4 . - CDS 57130 - 57780 306 ## CCC13826_1776 ATPase 47 16 Op 5 . - CDS 57787 - 58857 677 ## COG4637 Predicted ATPase 48 16 Op 6 14/0.000 - CDS 58904 - 60115 1067 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 60168 - 60227 4.7 49 16 Op 7 . - CDS 60230 - 61288 984 ## COG1089 GDP-D-mannose dehydratase 50 17 Op 1 7/0.000 + CDS 62478 - 63053 498 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 51 17 Op 2 . + CDS 63073 - 64449 1167 ## COG2233 Xanthine/uracil permeases + Prom 64480 - 64539 10.7 52 18 Tu 1 . + CDS 64668 - 65540 731 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 65550 - 65604 16.5 - Term 65532 - 65597 20.0 53 19 Op 1 . - CDS 65626 - 67320 1048 ## COG4690 Dipeptidase 54 19 Op 2 . - CDS 67360 - 68178 391 ## PRU_1066 hypothetical protein - Prom 68213 - 68272 1.6 55 20 Op 1 . - CDS 68276 - 68929 464 ## COG0597 Lipoprotein signal peptidase 56 20 Op 2 . - CDS 68967 - 69347 336 ## PRU_1068 hypothetical protein 57 20 Op 3 . - CDS 69410 - 73090 2890 ## COG0060 Isoleucyl-tRNA synthetase + Prom 73764 - 73823 6.2 58 21 Tu 1 . + CDS 73867 - 74004 72 ## + Term 74030 - 74096 30.0 + TRNA 73996 - 74083 36.8 # Ser CGA 0 0 + Prom 74006 - 74065 80.3 59 22 Tu 1 . + CDS 74110 - 74322 73 ## - Term 74281 - 74329 -0.8 60 23 Op 1 42/0.000 - CDS 74399 - 75370 553 ## COG0224 F0F1-type ATP synthase, gamma subunit 61 23 Op 2 41/0.000 - CDS 75373 - 76962 1622 ## COG0056 F0F1-type ATP synthase, alpha subunit 62 23 Op 3 38/0.000 - CDS 76980 - 77516 434 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 63 23 Op 4 . - CDS 77525 - 78043 468 ## COG0711 F0F1-type ATP synthase, subunit b 64 23 Op 5 . - CDS 78058 - 78300 332 ## PRU_1195 ATP synthase F0 subunit C (EC:3.6.3.14) 65 23 Op 6 . - CDS 78351 - 79397 670 ## COG0356 F0F1-type ATP synthase, subunit a 66 23 Op 7 . - CDS 79419 - 79796 235 ## PRU_1197 hypothetical protein 67 23 Op 8 42/0.000 - CDS 79839 - 80081 281 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 68 23 Op 9 . - CDS 80113 - 81642 1755 ## COG0055 F0F1-type ATP synthase, beta subunit - Prom 81734 - 81793 6.5 69 24 Tu 1 . - CDS 81804 - 82781 934 ## COG0205 6-phosphofructokinase - Prom 82861 - 82920 6.6 70 25 Op 1 . - CDS 82974 - 84167 528 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 71 25 Op 2 . - CDS 83978 - 85462 1201 ## PRU_1515 polysaccharide biosynthesis protein + Prom 85437 - 85496 3.8 72 26 Op 1 . + CDS 85517 - 85651 62 ## 73 26 Op 2 . + CDS 85670 - 85939 63 ## - TRNA 85789 - 85864 78.1 # Met CAT 0 0 + Prom 86020 - 86079 7.7 74 27 Op 1 11/0.000 + CDS 86137 - 86730 682 ## COG1309 Transcriptional regulator 75 27 Op 2 . + CDS 86789 - 87541 290 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 87623 - 87682 4.2 76 28 Op 1 . + CDS 87708 - 88388 169 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 77 28 Op 2 . + CDS 88399 - 89106 224 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 78 28 Op 3 . + CDS 89181 - 89822 692 ## PRU_0954 hypothetical protein 79 29 Tu 1 . - CDS 89946 - 91931 1467 ## COG3525 N-acetyl-beta-hexosaminidase - Prom 92017 - 92076 7.4 80 30 Op 1 . - CDS 92233 - 94839 1592 ## Cpin_3424 TonB-dependent receptor 81 30 Op 2 . - CDS 94836 - 95498 422 ## gi|282881604|ref|ZP_06290273.1| hypothetical protein HMPREF9019_0434 82 30 Op 3 . - CDS 95485 - 95994 323 ## Tbis_1154 ECF subfamily RNA polymerase sigma-24 - Prom 96048 - 96107 7.7 + Prom 96158 - 96217 7.8 83 31 Tu 1 . + CDS 96253 - 96372 77 ## 84 32 Tu 1 . + CDS 96740 - 96943 64 ## 85 33 Tu 1 . - CDS 97104 - 98048 893 ## PRU_1827 hypothetical protein - Prom 98204 - 98263 2.7 + Prom 98050 - 98109 5.8 86 34 Op 1 . + CDS 98192 - 98908 658 ## BF3746 TonB 87 34 Op 2 . + CDS 98934 - 99908 1032 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 99926 - 99970 6.0 + Prom 99918 - 99977 2.6 88 35 Op 1 . + CDS 100031 - 100864 742 ## COG0084 Mg-dependent DNase 89 35 Op 2 . + CDS 100869 - 102116 992 ## RB2501_03100 hypothetical protein + Term 102262 - 102330 31.2 + TRNA 102224 - 102314 61.2 # Ser GGA 0 0 + Prom 102531 - 102590 3.6 90 36 Op 1 . + CDS 102718 - 103374 546 ## COG0603 Predicted PP-loop superfamily ATPase 91 36 Op 2 . + CDS 103461 - 103671 213 ## BF3596 6-pyruvoyl-tetrahydropterin synthase Predicted protein(s) >gi|281304516|gb|ADEF01000066.1| GENE 1 3 - 902 773 299 aa, chain + ## HITS:1 COG:CC1418 KEGG:ns NR:ns ## COG: CC1418 COG2017 # Protein_GI_number: 16125667 # Func_class: G Carbohydrate transport and metabolism # Function: Galactose mutarotase and related enzymes # Organism: Caulobacter vibrioides # 12 298 88 376 378 205 39.0 8e-53 LQRSQYADTVHNASDFGAAIGQYANRINKGQITVAGKKIQLPQNSFRHCLHGGPSGWQYA IYEGQQLNDSTLQLSLHSPNGDNNFPGNVTATVTYTVKNDNTLDIQFEATTDAETVINMT NNSYFNLSGDPSKAGTNMILYINADNYTPCDSTLMTTGEIKSVYGTPMDFRKRHPLFETI GDTTFTQIKYANGYDHNYVLNTYTNGKGDDTKVAASLYSPESGIYMEVFTNQPGLQFYSG NLLSGSVVDKKGIAYPQRAAVCLAPQKYPNSPNKKNWPSPYLKPGEKYFSHVAYRFSIR >gi|281304516|gb|ADEF01000066.1| GENE 2 1696 - 2757 881 353 aa, chain + ## HITS:1 COG:PA3646 KEGG:ns NR:ns ## COG: PA3646 COG1044 # Protein_GI_number: 15598842 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase # Organism: Pseudomonas aeruginosa # 1 345 5 348 353 220 36.0 3e-57 MEFTAQQIAQYINGRIEGDENVSVHNFSKIEEGKTSTISFLSNPKYTQYLYNTQSSIVLI DDKITIDRPVTTTLIWVQNAYDAIAKLLQLYESMRTHKTGIDPLASIAPTAKIGKNVYIG AFASIGEGVVVGDNTQIYPHVVLCDNVSVGDDCLFYPQVTVYHDCKIGNHVILHAGCVIG ADGFGFAPTSDGYDKIPQIGIVTIEDHVEIGANTCVDRSTMGSTYIRQGVKLDNLVQIAH NTEIGEHTVMSAQVGVAGSTKIGQWCMFGGQVGIAGHITIGNKVYLGAQSGVPGSLKDNQ QLMGTPPMEQIRFFRSHAVARKLPEMYKQLNELQREIELLKKTTDKLVSNNQE >gi|281304516|gb|ADEF01000066.1| GENE 3 2759 - 4150 1180 463 aa, chain + ## HITS:1 COG:PM0148 KEGG:ns NR:ns ## COG: PM0148 COG0774 # Protein_GI_number: 15602013 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-3-O-acyl-N-acetylglucosamine deacetylase # Organism: Pasteurella multocida # 4 297 2 273 305 164 36.0 4e-40 MDTIKQRTLNGSFSLCGKGLHTGLSLTVTFNPAAENTGYKIQRIDLENQPIIDAVAEKVV DTQRGTVLANGEVRVSTVEHGLSALYAMGIDNCLIQVNGPEFPILDGSAAMYVDKIRQVG IVEQNAPKDFYIIRKKIEVKDEETGSCITILPDEQFSITAMCSFESKFINSQFATLDNIE NFGDEIAPARTFVFVRDIVPLLEANLIKGGDMDNAIIIYEREVSQDKLDQLADILKVPHM DATKIGYIQHKPLMWENECTRHKLLDIIGDMALIGKPIKGRIVATRPGHTINNKFARLMR KEIRKHEIQAPIYDPNEEPLLDNIRIRQLLPHRYPMQLVDKIIAIGSYSIVGVKNITSNE PFFVGHFPKEPVMPGVLQIEAMAQCGGILVLNQVEEPERWSTYFLKIDNVKFRQKVVPGD TLIFRVEMIQPVRHGISTMRGYAFVGDTVVSEATFTAQIVKTK >gi|281304516|gb|ADEF01000066.1| GENE 4 4212 - 4982 721 256 aa, chain + ## HITS:1 COG:ECs0183 KEGG:ns NR:ns ## COG: ECs0183 COG1043 # Protein_GI_number: 15829437 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase # Organism: Escherichia coli O157:H7 # 4 256 8 262 262 211 46.0 1e-54 MNQISPLAYVHPEAKLGDNNIIGPFCYIDKNTVLGDGNVLQNSVTIHVGARIGNNNELFP GASISTKPQDLKFKGEETTCQIGNHNSIRENVTISRGTASKGTTIVGDNNLLMENMHIAH DCIIGNEIIIGNSTKLAGEVTVDDRAIISATFLCHQFCHIGGYVMVQGGSRSPKDIPPYI IAGREPIRYAGINIVGLRRRGFSNELIDLIHEAYRLLYSKGVLSEGIEEIKKNINITPEI QYIIDFVESSQRGIIR >gi|281304516|gb|ADEF01000066.1| GENE 5 4983 - 5885 659 300 aa, chain + ## HITS:1 COG:BH2366 KEGG:ns NR:ns ## COG: BH2366 COG0324 # Protein_GI_number: 15614929 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Bacillus halodurans # 4 300 5 309 314 183 33.0 3e-46 MNTLIVLLGPTGVGKTELSLKIAEHLNTPIINADSRQLFAEIPIGTAAPTSSQLQRVKHY FVGSLHLQDYYSAAKYEEEVLQLLPELFSTSPHHVALLSGGSMMYISAVCQGIDDIPTVD DTTRQWMKERLEREGLAPLVEELSLLDPVHYNIVDRNNPRRVVHALEICHMTGKPYSSFR TNTKKKRPFNIVKVGVNRTREEMYNRINLRVLEMMRQGLLDEAKAVYPLKGLNALNTVGY KELFAYFDGDIPLEEAVRRIQSNSREYMRKQLTWFKKDQDIQWFNPDNIEEILNYIDNQL >gi|281304516|gb|ADEF01000066.1| GENE 6 5927 - 8416 1938 829 aa, chain + ## HITS:1 COG:NMA0655 KEGG:ns NR:ns ## COG: NMA0655 COG5009 # Protein_GI_number: 15793640 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase/penicillin-binding protein # Organism: Neisseria meningitidis Z2491 # 52 728 21 697 798 275 29.0 3e-73 MKSNQIKTFLNWCWNKIRGFWPWYKQLYIGRPWYAKTGIALLSGVIALFIYLGAVDINFL WLFGKSPGFAQIKNPTTASASEIYSSDGKLIGKFFNENRTPVTFNEVNPLFWKALIDTED ERFYHHIGIDFQGIFAAAKDAVVGNDARGASTITQQLAKNMFRVRTQYSTGILGKIPGIK MLVMKSKEWIIALKLEMLYDKNEILTMYANTVDFGSNSYGIKTASKTYFNTTPSQLTVEE SAVLVGMLKATTHYNPISNPENSLRRRNVVMKLMEAKGDLSKAQYDSLSTIPIKLHYSVE TNYDGQALYFREAIANYLKDWCEENGYDLYTSGLKIYTTLDTRMQRYAEEAARKQMKQIQ RNFNNHWGKNDPWIDENGQVIPGFIEQIAQRQPVYKYLSAKFPNQPDSISYYLNQPHTVK LFDYEHGTIEKQMSTMDSIRYMVRFMHCSMVAMEPQTGAVRAWVGDIDFNSWKYDKVTAM RQPGSTFKLFVYTEAMNQGLTPCDKRRDEYISMQVYDKKKQQEVTWTPGNANGRFSGDSI PLKGAFARSINSIAVRLGQEMGIKRIIETAHKMGIKSPLDDAPALALGSSDVNLLEMANA YCTVANDGKHHEPVLVTRIEDSEGRQVYIAPTKSEQVIPYKSAFFMQQLLLGGLREPGGT SMSLGGYVGKYRDTDWGGKTGTSNNHSDAWFMGVSPKLVVGAWVGGEYRSIHFRTGALGQ GSRTALPICGYFLQEVLNDPAFKAYHAKFSKPKDDDITRSMYTCDSYYEKAKVDTTAQDT LNDDMEEVLFDEFGNPIHKSEEKLKPSERLAVPQKKKEPTEEVIKLDNL >gi|281304516|gb|ADEF01000066.1| GENE 7 8416 - 10155 1165 579 aa, chain + ## HITS:1 COG:SPBC887.14c KEGG:ns NR:ns ## COG: SPBC887.14c COG0507 # Protein_GI_number: 19113280 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Schizosaccharomyces pombe # 14 443 311 779 805 169 30.0 2e-41 MAHGIDIEKIDLNNQELQNALQLVQFTHRSLFLTGKAGTGKSTFLHYIAQTTKKKYVILA PTGIAAINVGGVTLHSFFKLPFHPLLPNDRRYSTQQLRNTLKYNSEKIKLIRELELIIID EISMVRADIIDFIDKILRVYSHNMRIPFGGKQLLLVGDVYQLEPVLKEEDWQLLQPYYPS KFFFDAHVFRSFQLVCIELQKVYRQRDDKFISILDHIRTSTVTNTDLSLLNQQVGLPQPM DAHQLSITLSTRRDTVDYINSLHLSKLPGDATILHGSIDGEYPENNLPTPIELEVKTGAQ ILFIKNDREKRWVNGTLGTIIGIGDEEDGKIYVRTEQGEDVDVEQEVWNNVRYTYNQKEQ KVEEEILGSFQQFPLRLAWAITIHKSQGLTFNQVKIDLSGGVFAGGQTYVALSRCRSLKG IALQEPVKKEDIYVNQEVVRFSKTYNDPSALNTAMQQSKADKQYHDATKAFDRGDMQTAL DYFYKAIHSRYDIEKPEVKRLIRRKLNIINLLREQNKQLQKEKQDAEAFLKELSTEYVIM GKDCEKEGMTEAAIRNYQKALKLYPTHPQALKRLKKLNG >gi|281304516|gb|ADEF01000066.1| GENE 8 10580 - 13654 1921 1024 aa, chain + ## HITS:1 COG:no KEGG:BF1326 NR:ns ## KEGG: BF1326 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 33 1024 103 1101 1101 882 48.0 0 MNRILPSKTICTLLTMLLSGNILLALSTVTSPSTREKIIMSTQQDVTCTGIVSDVHGEPI TGASVVSNDKKWKTITDFDGKFSLKSVPINTIFTVSYLGFETVTVKWQGKPITITLKETN EALNEVVVTALGIKRAAKALSYNVQELAGEKLNTVKDANFMNSLSGKVAGVNINASSAGI GGATRVVMRGIKSIAHDNNALYVIDGVPISNHNDGGSGGMYAAQPTGEGISDLNADDIES MSVLSGPAAAALYGSSAANGVILITTKKGAEGITRLEVSNSTTFSNPFIMPEFQDTYSNR PGEFKSWGKKGTLYSMNPADFFNTGTNLINSVTFTTGTKKNQTFASASLNNAAGILPNNT YNRYNFTIRNTTKFLNDKLTLDVGANYVRQNQKNMMAQGEYWNPLLALYLFPRGEDFDEL RQYEIYDPVRRISIQNWTWGDQGHLLENPYWQMHRKDRTQQHDRYMLNANLTYDVMKWLS ISGRIRMDNQHNNNETKYHATTNQWWTQGSQKGLYGYGRGDNRQIYGDLMANVNKNWNET YSLSSTLGTSFKDYRTNYEGYSGPLRDMPNVFNAYNIDTQLGTPGISHAQLREYAIFASA ELGWRSMVYLTMTARNEWSSTLSNTSQMSYFFPSVGISGIISQMVKLPKTINYLKARISW ADVGSPLPMNLTEQAYTWNPNSKTWDAPNYRPVNKLYPEKTTSWEAGINTKLFDNTLSLD ATWYLSDTKKQTFNVQTSAASGYSSMYIQTGNVRNWGMEFALGYQQHFGLLDWESNLTYS FNRNKITELVKDYYDEVTNEHYHLDYLNQSNVRLVVGGTMGDIYAGSDFKRDPEGNIWVD PSTGNVVKENLEQPVKIGSVLPDGNLGWRNSITIKGVNLTALLTARFGGHVLSVTQSILD EYGVSKTSAIARDNGGIQVNRGRIDPEKYYTAVAGREPIAQEYLYSATNVRLQEFSVGYT IPKTWLLNTCSANISLIARNLWMIYCKAPFDPESTASTGTYMQGYDYFMQPSMRSIGFSV KLKF >gi|281304516|gb|ADEF01000066.1| GENE 9 13682 - 15238 1129 518 aa, chain + ## HITS:1 COG:no KEGG:BF3612 NR:ns ## KEGG: BF3612 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 4 517 6 540 542 353 39.0 1e-95 MKYIKNTFITLTVIVSLLTSSCTDNFSKINAKIDGVTENEMSGDNFKIGSSFPRIEALVV PADASGYFQHQENLCGDVYGRFMMSNAKWKGGNLSEFSYQHNGWIDNCFNLITDFYPAWR DIVKDTHAEGVNYAWAVILRVSIMHRLTDIFGPIPYSKIDSGNLFVPYDSQEEVYKKMLN ELSDAIQTLSVYHHANPSATPMKAYDRVYGGDFGKWIKYGNSLMLRMAIRMRFAEPDLAR KYAEEAVNNNVGVITDNADNAAYQPTGNNMLWLVVEGWNDAKACADITSYMEGYNDPRRE RYFTESTFDQKGFKGLRAATNTSDDSYKKYSKPRIGQTDKTLWLTAAEVYFLRAEGSMLG WEMKGSAKELYEEGIRHSFDQWGAGSADGYIQDGKSKPTDYLDPNGSAESAEAVSKITIK WDDNANDEEKLERIITQKWIALWPLGHEAWCEHRRTGYPRFFDLVRPVQTIYKGMKVANR LPFARAEYDNNHDNVLKAVQLLGGPDNFATKMWWQAKP >gi|281304516|gb|ADEF01000066.1| GENE 10 15287 - 16297 608 336 aa, chain + ## HITS:1 COG:no KEGG:BVU_0617 NR:ns ## KEGG: BVU_0617 # Name: not_defined # Def: glycoside hydrolase family protein # Organism: B.vulgatus # Pathway: not_defined # 3 336 5 351 352 187 31.0 4e-46 MKYTKLMVLTTFITLLSACDSWTDVEVYEPTNLTDANRTETYYANLRAYKQRTHTITYAK WQGWTGVGDTMNRQMRGLPDSLDVVGLTADFQDPTTEMKSDMEFVRKIKGTKVIVAISII NIGDGFRTENSNQQAMSIKQYADKLINLVLLNNYDGLDIELLPESGKRGTIAGDSNNTHE LLDALSRSLGPRSGNEKLLFFSGDPTAISAEEIYWFNHVIAYAFGSKSDADLDNIVKQWN KQFIASFSFTELTKRLIVMEDFLSHKDGGVLYRDRFNNGMLSLEGMARWIPLHHGKRVTK GGVGIYRMDNEYTIEGQTSTYPATHKVIQILNPSIK >gi|281304516|gb|ADEF01000066.1| GENE 11 16306 - 16821 292 171 aa, chain + ## HITS:1 COG:no KEGG:BT_1037 NR:ns ## KEGG: BT_1037 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 14 143 7 132 395 75 33.0 7e-13 MLKHFLFFYTVMAAFLITACNDAEYSPYDNSIYIAEAYGNNRRYITIDNEGAESAISARL AQIARTAVKVTISINDKALERFNQKNHTNYKSLPANCYTISAEQIEIPEGKVSSEPIKIK INATALESLKGEEQYAIAATIINYSPQDIHLMDNMKTCVFVCEKTKTETKN >gi|281304516|gb|ADEF01000066.1| GENE 12 16828 - 17784 668 318 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881542|ref|ZP_06290211.1| ## NR: gi|282881542|ref|ZP_06290211.1| F5/8 type C domain protein [Prevotella timonensis CRIS 5C-B1] # 1 318 1 318 318 606 100.0 1e-172 MMKTKYFIINILASLLLLISFVTIGCDQSEDPEDYTPKLYVFTTLKNGMVERSEVVQSPT SIIMPKDTIEFYVHLSKEVSHDITVSVTESPILAHKYDTLKTSLPTGSVKMLEQSVVIPA GKTISTKPLRISLEQTKDVESLKGEGIIALQITTNSGIEILKGRDVCYWTISKQERNIFQ GSTNGITPYPINLFTLKANVRSNHLRRLYDNRPNTQWFCDKEGWLQVCFNKKSVLGGLAI WPYDNNGDYSSSPKNIELLTSKDGKEWQSLGTVEFPLPSAYSPLVVKLYSPLEVEYVKIV FHEGFSEKIRIAEFTVYH >gi|281304516|gb|ADEF01000066.1| GENE 13 17818 - 21018 2459 1066 aa, chain + ## HITS:1 COG:BH0785_1 KEGG:ns NR:ns ## COG: BH0785_1 COG4724 # Protein_GI_number: 15613348 # Func_class: G Carbohydrate transport and metabolism # Function: Endo-beta-N-acetylglucosaminidase D # Organism: Bacillus halodurans # 120 495 101 465 556 113 24.0 2e-24 MKMTKHLLLVIILAITSISGIAKNGFYEFDSVVPETILRLFLQAQKEGRNYPTEQQFKDA GISLDDLEFIRSHVQRRQLVNPKDHLLTNLYNYRKLFMCTPMGNGLHGYHGYPSDELGHS DVYTMWNYTEAFGSWNHGFFQAPGSWVDAAHKNGSRCMSGQMFFESTYGGADDTKWIQLI STKENGEYVYVDPMINALMFFGSDGIVYNWEAHGYTNADVIAFHKALYKKAKERNFLDYN SLIYTNESSLNESNAKYLVGTKDEPVHECFLNYWGGDIADNIDNSQSIAEQFCGGTERVY QGVHILRMDRTWTRLAKPGADKMGLIVWGEHERTHIYDKSEGATPEKWQADYQLMQEHFI SGGNGNPANRPSLSGSISATYADKLASFCGMAEFFPERSTIQGKQAFATHFNLGNGNYYY LNGVKQTKGGWYNMAAQDVVPTYRWLIYKAGTTNVNSTIKASFYHTDAYVGGSCLNLKGN AGSEGSDIILYKTQMQLGTEPIAKIATKSLEGNATLSLLLKVDGTWKEYAAGAIGSNWHE NTIKLADLGQGTIERIALRIKGNADILVGKIELNDNTVKTPKGIKEILSATTMAEDVDNI TLKIHWKVDATPDEYGRCFNEANDIDHFEIVCKTETGDILEVGRTSQWATIVSKVPFAAD AETMEIGVRAVSTDLKTKSEIKWFTVNKGTPDEVVDPSDVSGNTGIYDINFNKKTPHTRE DRYMMHIGIYSNDGTLQKFPNNDIQSRITKQLYLDATEKALFDVVAGETYTPYIDYSALW MSGYAYIDWDNSGDFDAETGISFDANCKPTREDNCEVVSFSAHNSNNDENTWYKSDGTRF NKSEFPKPNNIKMAPFRVPADIAPGIYRMRFKLDWNSLKPGGNDDPRNLIYQNGGDIIDV LINVHAAEGKLGADAKNGTVEKNGNILTTEMNATAEYGKDLPLTFKPEQNYNITGATVRH GYNLRNEYNYAGDGKYDDNGNRQWWEDKLEFTGESYTIPAKLVNSNLLVIPHFNLPNSIN TINVDEKTLSENNIYNLSGQMIRRAGEKTKIPAGVYVVKGCKFVVK >gi|281304516|gb|ADEF01000066.1| GENE 14 21929 - 24085 1300 718 aa, chain - ## HITS:1 COG:no KEGG:BVU_4140 NR:ns ## KEGG: BVU_4140 # Name: not_defined # Def: sialate O-acetylesterase # Organism: B.vulgatus # Pathway: not_defined # 43 707 23 687 687 897 62.0 0 MRTQLFITLRFQNHQSKLLLACLLLFSCFVVLHTDAKPIVPPIRVACVGNSITYGTGIAN RDKDSYPAQLQAMLGNKYLVGNFGKPGATLLRHGHRPYFKQQEFRDAMAFHADIAVIHLG INDTDPRNWPNYRDEFVTDYLALIDSLRQANPKVRIILARLSPIAHRHPRFISGTQQWHE QIQTSIETVAAISGSELIDFHAPLYPYPFLLPDALHPNVEGAGIMAKVVYGSITGNYGGL HLPAVYTDNMVLQRGVPITIHGIANAGETVKVKLGSLYQTTRANQLGKWQVTFAPQKAER STTLTVSAGKQKRIFHDVAIGEVWLCSGQSNMAFMMHQAATAQRDIPLSDDEDLRLYDMK PNWETVDVEWNKSVLDSLNHLQYYRPSAWTVASPDAVRNFSAVAYYFGRMLRDSLQVPVG IICNAVGGSPTESWIDRHTLESRFPAILNNWLHNDFIQPWVRQRAAKNIAQAKGTGVRHP YEPCYLFESGILPLQRYTVKGVTWYQGESNAHNIEAHETLFKLLVDSWRQYWNNVSMPFY FVQLSSLDRPSWTWFRDSQRRLMQQIPNTGMAVSSDLGDSLNVHPTHKQEIGERLARWAL ADTYHRPLLPCGPLFKCAWHEAGNKVAVSFNDADKLSTSDGKPVDGFEIAQYDGLFYPAH AEIKGQLVILQSDKVREPRFVRYGWQSYTRANLVNGDGLPASTFRGEVTTQPCRSRME >gi|281304516|gb|ADEF01000066.1| GENE 15 24869 - 26539 1314 556 aa, chain - ## HITS:1 COG:TM1650 KEGG:ns NR:ns ## COG: TM1650 COG0366 # Protein_GI_number: 15644398 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Thermotoga maritima # 30 390 21 293 422 103 26.0 9e-22 MQIYQIFTRLFGNQNMTRTPHGTMEENGVGKMNDITTTVLNRIHDMGFTHVWFTGIVRHA TTTDYSTYGIPRQHPAIVKGRAGSPYAITDYYDVDPDLAVQVPKRMDEFEALVKRTHDVG MKVIIDFVPNHVARQYHSICKPKGVRDLGENDDVNKHFDIHNNFYYCPGYSFEPAIDLCK DASEPYREYPAKCTGNDCFNASPSANDWYETVKLNYGIDYTDAGGRSEHFDPMPDTWRQM TDILLFWASKGVDGFRCDMAEMVPTAFWQYAIGKLKAKYPHVIIIGEVYNPTLYRAYIAS GFDYLYDKVGMYDCLRNIVCGKRPAHHITRQWQSVDNILPKMLYFLENHDEQRIASDFFC GSAERALPAFMVCAWLHTNPVMVYAGQEFGERGMDVEGFSGLDGRTTIFDYWAVKSIIEG YYQREKMDKRSQRLFEVYQKILQLCHQSAIGQGQFFDLMYANTQHSALFNPDEQYVFLRK SAEQILLIVVNFSPNQQRVHVNIPQHAFDFLHMRQATCKAVDLLTHQEQRAEWSASVPFV AQILGYGGRIYEIQQV >gi|281304516|gb|ADEF01000066.1| GENE 16 26679 - 27563 957 294 aa, chain - ## HITS:1 COG:CAC3575 KEGG:ns NR:ns ## COG: CAC3575 COG0331 # Protein_GI_number: 15896809 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Clostridium acetobutylicum # 3 294 5 297 308 267 47.0 2e-71 MKAFVFPGQGSQFVGMGKELYDNNETAKKLFDRANEVLGYRITDIMFTGTDEQLKETKVT QPAVFLHSVISALCLGDAFKPDMVAGHSLGEFSALVAAGALSFEDGLKLVYARAMAMQKA CEVAPGTMAAIIGLPDEKVEEICQEVSKEGKVVIPANYNCPGQLVISGDKEGIEEACEKL KAAGAKRALPLKVGGAFHSPLMQPAKDELQKAIEATTVNTPQCPVYQNVDGKPYTDAAKI KANLIAQLTSSVRWTTTVQNMIADGATDFTECGPGKALQGMIGRISKEVTVHGI >gi|281304516|gb|ADEF01000066.1| GENE 17 27627 - 28775 387 382 aa, chain - ## HITS:1 COG:no KEGG:PRU_2124 NR:ns ## KEGG: PRU_2124 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 18 336 9 316 365 176 33.0 1e-42 MNSLIEDHMKSRNNISNYISFLRYSLEKNLEKPNNLQSMDWDGLFEFSKRHSIIGVIFDG VSRLDANTPHPETALLYKWFQQAEQLKRTNLKINDDVVKLYNRVLKAGFPGCILKGQGNN TMYPNPWVRTPGDIDIWLQGNEGDILNYARKFDSTAIANYHHVQLRMPDISTSVEIHFTP SFCGNLFYNKRMREYFDQHANEQFQNKISLPNGIGEISIPTDPFNRIFQLSHIMHHFFFE GIGLRQIIDYYYLLKRGLGDVDKEKEVKTLKYLGMYKFARAMMYVQHTIFALDCRYMSVE PSERLGKILLKEILLAGNFGFYDNRYKFKGKSRMGQFLLEVYRNLHFAFYFPAETLFGRP VFRFWHQFEKMRIENNAKSRKY >gi|281304516|gb|ADEF01000066.1| GENE 18 28759 - 30006 1089 415 aa, chain - ## HITS:1 COG:SA0147 KEGG:ns NR:ns ## COG: SA0147 COG1086 # Protein_GI_number: 15925856 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Staphylococcus aureus N315 # 45 382 251 585 607 322 50.0 1e-87 MVSPLRNKEFRDDIQLQDLLINAGVTIYMTKGLQEWDNQNATSVVNSLKEISVEDLLPRD QIEIDMKSVETLLSGKIILITGSAGSIGLEMVKQISKFNPAQMILIDQAETPQHDVRLLM KKEFPTVSTETIVASIENYERMEKIFATYQPDYVFHAAAYKHVPMMEDNPSESIQNNIWG TKIIADLSVKYGVKKFVMISTDKAVNPTNVMGCSKRICEIYVQSLDKAEKEGKVTGNTQF VTTRFGNVLGSNGSVIPLFQKQIKAGGPVTVTDSNIIRYFMLIPEACKLVLEAGTQGNGG EIFVFDMGSPVKIADLAKRMIKLSGAENVEIKYTGLRAGEKLYEEVLNDEESTLLSFNPK IRIAKVREYDYDQIEQNIQQLLEISKTYDDLEIVRKMKQIVPEFKSRNSVYEQLD >gi|281304516|gb|ADEF01000066.1| GENE 19 30015 - 30245 297 76 aa, chain - ## HITS:1 COG:no KEGG:BDI_3816 NR:ns ## KEGG: BDI_3816 # Name: not_defined # Def: putative nucleotide-diphosphate sugar epimerase # Organism: P.distasonis # Pathway: not_defined # 3 76 145 218 646 68 43.0 6e-11 MVYDTMFENEKAQRTFIYGVKEGGIGLAKHINNQKPQHFRLMGFIANEDDPISAYLMGKK VYRVDQKLSQEIRTKK >gi|281304516|gb|ADEF01000066.1| GENE 20 30751 - 32163 1065 470 aa, chain - ## HITS:1 COG:Cj1121c KEGG:ns NR:ns ## COG: Cj1121c COG0399 # Protein_GI_number: 15792446 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Campylobacter jejuni # 8 470 2 385 386 281 37.0 2e-75 MMDKPEKRIILCLAHMSGNEQKYIKEAFDTNWVVPLGPNVNGFEEDLKRFVASTNCSDRG ESQLEKTNQGCGCAARDFSEERYPQRIQPHENDPEKLWLEGDERLKDKQVVALASGTSAV HLALVALGVKVGDEVICQSFTFCASSHPVTYQGATPVFVDSEKDSWNMDPDLLEEAIKDR IEKTGRKPKAIIVVYLYGMPAKIDEIKAVANKYDIPLIEDAAEGLGSRYKGQVVGTFGRF GVLSFNGNKMITTSGGGALICPNVETKNRVMFFATQAREAFPYYEHEEIGYNYRLSNICA GIGRGQLTVLDEHIAHHRRLAKLYKELFSKVDGITFHANPSTDFESNYWLNTITLDPELQ VKGQEHAYEQAVKGAVGGAAGVVHATGKVHTSCEPNANVEAMRVALDKMDIESRPLWKPM HLQPVYKNCPAYTNGVSEQLFKIGLCLPSGPCVSEDDVRYIVQSITDQIK >gi|281304516|gb|ADEF01000066.1| GENE 21 32289 - 32936 437 215 aa, chain - ## HITS:1 COG:MJ1437 KEGG:ns NR:ns ## COG: MJ1437 COG1011 # Protein_GI_number: 15669628 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Methanococcus jannaschii # 5 179 3 192 228 66 29.0 4e-11 MMPSKVVVFDLDDTLYKEIEFLKSAYHEITRTVNVPEAYDIMIKAYLAGENAFEKVIENC NLSKTVADLLKIYRNHKPLIFLSKDADTLLKSLYERSIRMGIISDGRNTQQWNKIYALHL LDFIDREDILISEETGYTKPAYQPYLYFMRKYPGAQYVYVGDNLRKDFIAPNMLGWVTVC LKDNGVNIHTQTVEVPEMNLPSMMVDSLAQIEPLV >gi|281304516|gb|ADEF01000066.1| GENE 22 32923 - 33891 535 322 aa, chain - ## HITS:1 COG:CAC2189 KEGG:ns NR:ns ## COG: CAC2189 COG0458 # Protein_GI_number: 15895458 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Clostridium acetobutylicum # 4 318 2 315 315 139 32.0 1e-32 MKENILITSVGQRVVLTEIFQKSIKELGLHSKIYSADLNPSMAPAGFISDHCFPICRCTK PEYIEELIALCKKNDIGIIVPTIDTELLVLSQHEMQFRAEGIQVMVSTPDFIKMCRDKRK TMVLFDSLDIHYPRLLDKHAPVFPMFAKPYDGSLSTNLHIIRKSEDLTLDILNDEKLIFT EYIDTADFKEFTVDMYYGKDNRVKSIVPRERIKIRAGEINKGITRRNAIVNYLKERMDYL PGVIGTICIQLFYREDDHRIYGIEINPRFGGGYPLSYWAHANYPSNIIREYLLGEDIDYS EEWTSNTLMLRYDREVIVYDAK >gi|281304516|gb|ADEF01000066.1| GENE 23 33903 - 34511 437 202 aa, chain - ## HITS:1 COG:BS_yvfC KEGG:ns NR:ns ## COG: BS_yvfC COG2148 # Protein_GI_number: 16080478 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Bacillus subtilis # 6 200 3 196 202 236 56.0 2e-62 MYQYFFKRILDFCIALTVFVCVSPLLLIVTVWLHFANKGAGVFFLQERPGLHGKTFKVIK FKTMTDERGADGELLPDEQRLTSVGRFVRSTSIDELPQLINVLKSDMALIGPRPLLPQYI PLYSEKQARRHEVRPGITGWAQCHGRNAISWSQKFEYDVWYVDHVSFTTDIKVILHTIKT VFLRSGISQEGNATMEAFNGDN >gi|281304516|gb|ADEF01000066.1| GENE 24 34866 - 36149 742 427 aa, chain - ## HITS:1 COG:SMb21231 KEGG:ns NR:ns ## COG: SMb21231 COG0438 # Protein_GI_number: 16264483 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Sinorhizobium meliloti # 43 388 50 368 384 85 26.0 2e-16 MNKKKLIRVTTVDISLDSLLRGQLNYLNQYYEVVGVAKDTGVLDEVAAREGIRVIDAPLE RPISIGKDIKALWFLWRLFRREKPWCVHANTPKGSLLAMVAAWAACVPNRIYTVTGLRYQ ATSGMLRTILKTMERVTCCCANHVIPEGEGVKRALREDRITGKQLQVVHHGNINGKDTSY LSRQATSELLRAENKETRLMEDATPFDGRRYMRQKLGYTDNDFVFILIARMVRDKGINEL AEVMSRLVRHSADLPRQPKLLIVGEKEVQSGGNITMEAQRFLNDSAAVFYAGLQKDVRPY LIAADALVFPSYREGFPNVPMEAGAMELPCIVTNINGCNEIIIDGENGVIIPAPVDRHGH LIQFASDDPQADGFSSPMSKALYQAMCDFIKHADNTNRMAANSRRLIQERYEQRDVWEAL RQRYAEL >gi|281304516|gb|ADEF01000066.1| GENE 25 36205 - 37293 714 362 aa, chain - ## HITS:1 COG:TM0622 KEGG:ns NR:ns ## COG: TM0622 COG0438 # Protein_GI_number: 15643387 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Thermotoga maritima # 1 357 2 368 388 134 30.0 2e-31 MKILQVITSLQIGGAEHVVVHLTKLLRQKGHTVDVVVFNGEETAFMRELEETRCRIYKFG HGVYNIKYIPKLRRIMREYDIIHTHNSSPQLFAAIANIGLRKVLITTEHSTNNRKREHPM FSFVDKWMYGKYAKVVTISKIAEKKLCSYLGFESNQPNSPLQRRIVTINNGVDVNAFYHA ESLPELAHRGKFVMVMVAGFREAKDQETVIRAIALLPDEYELWLVGDGVRRPEIESEIVK QNVTERVKLLGIRSDVPQLLKSANVIVMSSHWEGLSLSNIEGMSSGKSFVASEVNGLKEV TAGYGILFPHGDAEALADVIKKLHDDSGYYRQVADRCYQRALQYDIRKMVDAYEQLYDTV QQ >gi|281304516|gb|ADEF01000066.1| GENE 26 37303 - 38241 393 312 aa, chain - ## HITS:1 COG:no KEGG:PRU_1531 NR:ns ## KEGG: PRU_1531 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 14 296 6 266 294 173 36.0 9e-42 MIKEYIKRLCDERWNIGIIQNSLDNILQGEDIRVQWVEHDYKNSWFADPFILDVTDTDII VLVEEFPKNIYRGRISKLTIDRRSYQLKKLDVVKELPTHMSFPVIIRQPWFETSNGSTRD FVYLMPENGASSKLTIYRYWVQENIIEEVQNVLDESVADAIPLRVGNKVYLFCTRKPNVN GNTLYVYQWNCQEEKFIPLGSNNFQENIARMAGNFFEYEGALYRPAQECNIQYGHAVSLQ KVTCGGKSVLDMQALDCGTLEFKEVRRMFSNHPKLNVGLHTFNMYKGVIVTDALGFDNMW IRNSLSKFGIIH >gi|281304516|gb|ADEF01000066.1| GENE 27 38238 - 39365 470 375 aa, chain - ## HITS:1 COG:no KEGG:BDI_0029 NR:ns ## KEGG: BDI_0029 # Name: not_defined # Def: hypothetical protein # Organism: P.distasonis # Pathway: not_defined # 2 370 1 370 372 162 28.0 2e-38 MIENKFIIFAVDHFSSLGVIRCLGEAGIRPDVIIFSTHKPKLVQYSKYIAVLHHVRSLEE GYKCLVDEYMNESTKSFVVATSDEVESWLDLHYDELKDKFYFYHAQEQGRVTKMMQKHVI VEMAKRCGLCIPKTEIVSRGESSKMLKFPILTKAPTSTIHNWKNNVFICHNEDELQEAYK HIKCEKVLLQEYIEKQDELNVEGFCIDGGEAYFTLQNRYHRITNKSYGNYAYIEKYSYPE LEQAIRRLFRETHYSGVFELEFMIGKDGKCYFLEINFRNSAWLYAYSKCGQPLLIMWAKS VLCNKIITEYENIRKLPFNLMDEITDFKWSVMSGIVSPFTWLKECLGSDCHFYYNKQDAR PFYMYLWNRFRGLLK >gi|281304516|gb|ADEF01000066.1| GENE 28 39574 - 40428 166 284 aa, chain - ## HITS:1 COG:AGl863gl KEGG:ns NR:ns ## COG: AGl863gl COG3039 # Protein_GI_number: 15890547 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives, IS5 family # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 1 272 66 342 351 99 26.0 1e-20 MFKVIFLQCYYGLGDHQIEYLIIDRTSFREFLNIRTVSDVPDEKTVWACKNKLVKAGVFD TLFDDFRQLLDAKGLSFNEGKIIDATFVEAPGSATPAGKTLLSRTAREMSFGTTTHTRNA TRTLMRVGQRNVVRDIMDTKVIRRLTRNQKLIESYHTTASSTLDSNVISQLITDTDQRLY LDAGYEGREDVDKANAMRPVICEKGHRNHPLTKKQKKRNRKKSKRRCRMEHVFGFIEGVM HGSFVRTIGIARAKANFAHTCLVYNIFRYCQINKYQPQLLSCKG >gi|281304516|gb|ADEF01000066.1| GENE 29 40799 - 41662 401 287 aa, chain - ## HITS:1 COG:L17695 KEGG:ns NR:ns ## COG: L17695 COG0463 # Protein_GI_number: 15672198 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Lactococcus lactis # 10 226 12 229 285 166 38.0 5e-41 MIITVFTPTYNRAHLLPRLFESLVKQTYRDFEWIIVDDGSSDNTAEVINEWDADFPIRYY RKENGGKHTAINVGVKKANGELFLILDSDDSLPKDSLEIIAKQNDACSSKKDCAGVCGLM AHHNGERIGGGFPAEVLYESSLYLGYKLGVTGDLLEVFKASVLREFPFPEINGEKFCPEV LVWNRIAVKYKLYCFNKVVYYRDYLEGGLTDNIIKIRMKSPVATCMTYSEMLAYSIPIIQ KIKAAINYWRFRCCVQTYTPQVPRVKYFWRIFRPIGYLVHIKDRKVI >gi|281304516|gb|ADEF01000066.1| GENE 30 41659 - 42804 496 381 aa, chain - ## HITS:1 COG:no KEGG:BSU34310 NR:ns ## KEGG: BSU34310 # Name: epsG # Def: biofilm extracellular matrix formation enzyme # Organism: B.subtilis # Pathway: not_defined # 83 235 90 256 367 63 27.0 1e-08 MWIYLIVFFIPLLFFFADNKKNRSNSTVLFVYFLFLALFVGVSDMLGGYDRYIYCELFDG LADDIREGRNPFLSIGFLFFGGEQGYGLLTIIIAFLTSNRYIFIFIVTLVIYAMLFVSIK RYTKDYPVAVMLFLGLWFFFTFTYLRQVLGATTAWLSIRYIVKRDFWRFVLVWFIAYMFH NSALIFLPFYFVPIRKFNPQHVVLAMLLCFIIGLSNIPLSLFESYSIISSQRINVGGYVV DVGFRGAYMIEAVVFLFLILISYKKIKKDPQEIVLLNMALAFCAILLLFAKSENGGRLSW YYMIGIFATLSNITFRYKRSPAYSLGVALLSFILFLRITISWGVLLRPYKTFFTNGVREG DYIEQSYEYDHGYDRDKFYRK >gi|281304516|gb|ADEF01000066.1| GENE 31 42820 - 44022 578 400 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881562|ref|ZP_06290231.1| ## NR: gi|282881562|ref|ZP_06290231.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 1 400 1 400 400 829 100.0 0 MRMILITLSTPTYNNVRAASALPYHLIMGAKETVNIDFEIYSYNINGIDDLGIAEIEREL NVKIHLLQKPWWMIWMFRLHLGMLRVLLKYPYLSYLRVPEETIKKIKSSNPNIIWIYGEE IAGIAKKFEGIKRIVTMPDCESMFYYRMLRQRWATKHLSQILRYAFAYWQYRSMERCNCH ANVIYHFVGEVDAEFFKNINPSSKAIFLRHPLYAYNESKKIAFSEPKIKLLFAGRYDFYC QQGSNELLDAMLGRKQDLINNFEITFLGKGWETWNERLKTAGFVSSHIKFAPNYITELQK HDIQINAIDVGTGTKGKVLDAISNGLLAFGTKYTLENIAVMNGESCVQYSTVEEAMDKLM DICAHRNKYEQMAENGRRIVLQKHDKGKIADTLFDITKAK >gi|281304516|gb|ADEF01000066.1| GENE 32 44043 - 44990 622 315 aa, chain - ## HITS:1 COG:SP1365 KEGG:ns NR:ns ## COG: SP1365 COG0463 # Protein_GI_number: 15901219 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Streptococcus pneumoniae TIGR4 # 5 228 6 222 328 99 32.0 1e-20 MEIKVSIVIPVYKVEKYIERCLRSVFNQTYANIECIIVNDCTPDNSFIFAKELVESYQGS INFKFVEHEKNKGLSEARNTGIKMATGHYYFFLDSDDAIPPTSIEKLIETALLNDCPEIV MGVTKGVDANGNNVEVSSAQTKSFHDNSEVFQGYLNNLWYVIACNKLVKKDIFADHKTFF MPGITHEDVMWSFEISTYVNKIILCPFVTYHYYIGDTDSISRSVWNTKRVNDSITILERK AIYLERVSDRKGLARHIKNEGINIIYSLFRNGFSNDEIKKFMKRIVQLNSKKSIKEVRSD VLIYRRAIYYLYRLL >gi|281304516|gb|ADEF01000066.1| GENE 33 44974 - 45216 235 80 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881564|ref|ZP_06290233.1| ## NR: gi|282881564|ref|ZP_06290233.1| hypothetical protein HMPREF9019_0392 [Prevotella timonensis CRIS 5C-B1] # 1 80 1 80 80 158 100.0 9e-38 MLEGPTFTPELLDMCAKVNYPLSVMGPENPEIEATYSFYHGFKWYNNWRSGKSLDYKHIF SLKRYLDDFDYIRFLNGNKS >gi|281304516|gb|ADEF01000066.1| GENE 34 45210 - 45641 128 143 aa, chain - ## HITS:1 COG:HI1244 KEGG:ns NR:ns ## COG: HI1244 COG3955 # Protein_GI_number: 16273163 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Exopolysaccharide biosynthesis protein # Organism: Haemophilus influenzae # 19 103 13 96 206 61 32.0 6e-10 MQHSSISGHIHGLCHRLLKYPRLWYHKHKSRRLVNQNFSLFCNNCTGGVILHDMGLRFNS PTINLNIQPKSFIKLIRNLKDYMRCELEEIHDASVDFPVGRLSLPNGGGTCILNSFTTTL LNVLRRNGKNAKTELTGTTFLFC >gi|281304516|gb|ADEF01000066.1| GENE 35 45779 - 46873 432 364 aa, chain - ## HITS:1 COG:no KEGG:BF2794 NR:ns ## KEGG: BF2794 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 2 361 1 360 364 235 38.0 2e-60 MIKLGILTFHSAHNYGATLQAYGLQEFLRSLGHEVCIIDYRPAYITKDYLRDSCKYWLSR NPKMCLKRLINYVRYAGVRHARWENFNKFIENKLSLYPYLPGMDFHEFDAVFIGSDQVWS PYHTGGQYDEIFFGVGFKCKAISYAPSCSQSSLTEEQKERLTVLLGNLTLISVREHGFKR LLTPLTTQNISVVVDPSLLAGKKAYDKIAASIQRKKPYIVVYEIKPHKQVYDMACEIANQ LNAEVVELTNGVRNFHREGMVEAASPEEFLGYIKNASCVITTSFHGTAFSLLFHTPFYVV RQGNDADLRMESLLDFLNLRNRLIKMSDSPVFTAVDMDNTDVALQALRETSQNFIIENLS ELFS >gi|281304516|gb|ADEF01000066.1| GENE 36 46879 - 48081 252 400 aa, chain - ## HITS:1 COG:MTH341 KEGG:ns NR:ns ## COG: MTH341 COG1035 # Protein_GI_number: 15678369 # Func_class: C Energy production and conversion # Function: Coenzyme F420-reducing hydrogenase, beta subunit # Organism: Methanothermobacter thermautotrophicus # 9 168 10 186 406 61 30.0 2e-09 MIKLAPLSLCTGCGACAYPCPKQCITMREDMIGQIYPVIDNNICIECHACEKICPILNEP EGNSPVKAYASWSQNMENRRTSASGGVAHEIYDYALDRGYYIVGALTNPDFSVSLKVTDK QEDISAFKNSKYVFSSGYNAFNEIRDHLRQGHHVVAIGVSCQIAAMRKMYRNQPNIIFVE ILCHGMTPHSYLQQHIATIERDMGTKAVRVNFRDPAFKTQTFMFTLYDKDGKCFYAQRTK DGDSYQYGYHRSVSYRENCYHCHFAKEQRVGDIVLCDFYGLGKTTPCSYNHEKVSCVLIC TEVGKEFFRDVVKERNLFVEERPVKEAQEGNPRLTCPTPKTKSRLKFEQNIRRTKGDFEV AVTPLAERYMKLQNAPRIMHYYYALLNKIFKMSFKRLYKK >gi|281304516|gb|ADEF01000066.1| GENE 37 48078 - 49613 569 511 aa, chain - ## HITS:1 COG:no KEGG:Dfer_0062 NR:ns ## KEGG: Dfer_0062 # Name: not_defined # Def: polysaccharide biosynthesis protein # Organism: D.fermentans # Pathway: not_defined # 1 505 1 504 510 383 41.0 1e-105 MTSSVQENNRRVAKNTVLLYIRMGFILIINLYTSRVILKYLGVEDFGIYNVVGGITAMMG VLNSSMTVATQRYLSFEIGREDFERLNRTFSISLSIYIILCIVFFIICETIGLWFLNTKL IIPPDRVSAANWVYQFSIFAVINSLLTDPYNASIVSHERMDVFAYVSILENALKLLIVFC LPLIPLDRLVIYGALYLLVSLIITMIYRIYCIRNFKECHFQIYRDTKLFKEILSYSGWNL FGSVAGIAQGQGLNILLNIFFTPMVNAANGIAAQVNGAVGMFFSNFYIAVRPQITKYYAQ DELQSMFKLVYRSSKYSYYLIWIVALPIIIEAPYIINLWLGQLPTYVVDFTRFTIFISAI TAMSSPIMTMAHATGRIRTYQLVVGLCQILILPISYIYLANDFPPIIVFEVSLCMTLVAF FLRLYIVKILIPTFSIKEYMREVFVAVILVSMLSVILPYYMHYRLSVSLINTIFVCGAAV FSSFISIWLLGMTSNEKQFLINLVKDKIKAS >gi|281304516|gb|ADEF01000066.1| GENE 38 49982 - 50998 208 338 aa, chain - ## HITS:1 COG:no KEGG:Spro_0558 NR:ns ## KEGG: Spro_0558 # Name: not_defined # Def: acyltransferase 3 # Organism: S.proteamaculans # Pathway: not_defined # 5 324 7 319 335 78 27.0 3e-13 MTKEQTSIFKGIAILMMLWLHLFNSPHIVDICVPLLFIGNVPLVHLLTRFCSPVEIFIIL SGYGLHYVYRRGDLGFKKQSRRLLKLFSFYWLTLLVFVSVGCFVNPDKYPGDIWAVIGNV TSYSNSYNSETWFLFPYMLTSLTALWIFGAQSKLGNALSLVLSAILYFCSVYIISRYIAP QKLYDSMLNHLVTYFEFFFPMVIGGWIHDLHERNKLKLKGMNNFKVAGILLVVIMLKLLY PKILYGPIFAALFILIVLQFKNINGSVRQVLDFFGKYSMPMWLIHSYFCYYLFHDFIYGF RYPLIIYGVLLMVTMLVAIPLLKVHQYLYCWLTRRSAP >gi|281304516|gb|ADEF01000066.1| GENE 39 51338 - 51541 215 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQYTAPTLTIIHLDEAACTLLSASPVKQINKENNVNIIGSTEEDDAHNACSKGFMFLDE DDFDDSE >gi|281304516|gb|ADEF01000066.1| GENE 40 52027 - 53079 980 350 aa, chain - ## HITS:1 COG:MT0066 KEGG:ns NR:ns ## COG: MT0066 COG2110 # Protein_GI_number: 15839437 # Func_class: R General function prediction only # Function: Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 # Organism: Mycobacterium tuberculosis CDC1551 # 1 347 1 348 352 202 34.0 6e-52 MISYTTGNLFDSHAQALVNTVNTQGVMGKGIALQFKERYPNNYKSYRQACKDQKVVIGKM FITEEREMDGNKRLIINFPTKQHWRNSSQYSYISSGLQDLRQEIIDRDIASIAIPALGSC NGGLDWNNVKRMIEEYLHDLDCQIMIYEPNALIIDRMKKEKAKLTPARAMLLSVLCDMVL EDGTPSEFAAEKIAFFLQEFGAKDAFRLQFQKGYYGPYSGKVKYVLHYLNGSYIMGMETM NNKPFDDFWLTGDAANVVSEYLHKKENQRWLGIAERTKEFLRGFYSNYMLELLATIAYLS KTDKTLLNAKTEEEKIETIGRDLAQWSNRKGKMFHKDKYIGMALQHLRDK >gi|281304516|gb|ADEF01000066.1| GENE 41 53084 - 53719 176 211 aa, chain - ## HITS:1 COG:no KEGG:Nhal_3405 NR:ns ## KEGG: Nhal_3405 # Name: not_defined # Def: hypothetical protein # Organism: N.halophilus # Pathway: not_defined # 10 195 17 198 217 96 34.0 7e-19 MSDNKIKYAFRIVHIDNIPYILENGIVNAAKSTKKDDSYISIGDESLIEVRRNQNIIHTE SCIGDYIPFYFGPRTPMLYTIQHGYNGVKKCDATNLVYLVLKISDIIKSGFQGYFTDGHA RNICSHTYEIDKLNQLNELVHYENVYRTYWSIREDNSGEYKRLKSAELLIENNIPTTMIA GYVVYDKAAHDKLVSFGIDNEKIIINNNYYF >gi|281304516|gb|ADEF01000066.1| GENE 42 53712 - 53948 113 78 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFQNTIRCHTATKSYYAIAFEDKTTGIILHQDKNSMLDELLVCPVYVAVGCIMGVTGVF MCIESCRTVFCKHLINNV >gi|281304516|gb|ADEF01000066.1| GENE 43 54294 - 54497 205 67 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKQHTAPTLTIIHLDEAACTLLSASSVKQINKENNVNIIGSTEEDDAHNACSKGLMFLDE DDFDDWE >gi|281304516|gb|ADEF01000066.1| GENE 44 54541 - 55782 737 413 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881571|ref|ZP_06290240.1| ## NR: gi|282881571|ref|ZP_06290240.1| conserved domain protein [Prevotella timonensis CRIS 5C-B1] # 1 413 1 413 413 822 100.0 0 MKTYVNFWLLCFMLLFLAEVETRAQRFYFKQLFYSFKYKYEKSQTQKTFTPTHKLYNHQW KLTVDGVLAKANTDCLHVGKQEEKSQIICLATTTPFKDVDLVRVSTDIADRRNGRGYEVR MTLGSDKDKSDTCKYTKKKKDSNNNLSNFYITKGKINSGTLTVEMKGDNYEKGALYLYFI EVASVLSGQQKLQTQHIKPGETYSYQVQRTFASDHWNTICLPFDVSKEALKEAMGNCTLL KFTKKIENNVLQFKDTVVIEAGVPYLIKPVVKVKNPIFSNVVYQDVKPQTVQDETGQYAF VGTFDPVNLSVDGSELFLLANGNLAKPKSEEESEMYGMRAYFKINKQTSSSAKQITYAID CGSETVNGIQLLHSHPSTHNQHIYNLQGVEVGTDIHYLPAGVYVMGGKTIIKR >gi|281304516|gb|ADEF01000066.1| GENE 45 55833 - 57083 1657 416 aa, chain - ## HITS:1 COG:BH3708 KEGG:ns NR:ns ## COG: BH3708 COG1004 # Protein_GI_number: 15616270 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted UDP-glucose 6-dehydrogenase # Organism: Bacillus halodurans # 7 416 3 388 388 473 60.0 1e-133 MNKKYTIAVAGTGYVGLSIATLLSLHHHVLAVDVVQAKVDKINRRESPISDEYIEKFFAE KQLDLQATLDGETAYKQADFVVIATPTNYDPVKNFFDTSHVEEVIELVMKVNPHAIMVIK STVPVGYTENVSEKYSCENILFAPEFLRESKALYDNLYPSRIIIGRPAGNEKLEQAAHAF ASLLQQGAMKENIDTLFMGTTEAEAVKLFANTYLALRVSFFNELDTYAEMKNLSTKDIIQ GVGLDSRIGSFYNNPSFGYGGYCLPKDTKQLLANYEDVPENLIEAIVQSNRTRKDFIADR VLHKAGYYDYFNRGAFDTSKEKKCVIGIYRLTMKSNSDNFRQSSIQGVMKRIKAKGAEVI VYEPTLEDGSTFFGSRVVNNLTQFKQESQAIVANRYDSCLDDVEEKVYTRDIFKRD >gi|281304516|gb|ADEF01000066.1| GENE 46 57130 - 57780 306 216 aa, chain - ## HITS:1 COG:no KEGG:CCC13826_1776 NR:ns ## KEGG: CCC13826_1776 # Name: not_defined # Def: ATPase # Organism: C.concisus # Pathway: not_defined # 3 208 1 213 221 141 39.0 2e-32 MSVKRLIIICEGETEQEFCKALLMPELSKQNISVYCPRIKKSMGGIVKWDDLRNQILNHL RENAFVTLFIDYYGLTDKHHFPAWEEVLCKQDKQEIINRLCEGMECDINDRRFIPYIQLH EFESLLFHDIDSFDHVFSEKDFIDRDELTHILEQYPNPEEINNGRDTSPSHRLSKIINGY QKVIYGNVIAMEIGLDGIRKKCPLFNKWVERLLALS >gi|281304516|gb|ADEF01000066.1| GENE 47 57787 - 58857 677 356 aa, chain - ## HITS:1 COG:all8080 KEGG:ns NR:ns ## COG: all8080 COG4637 # Protein_GI_number: 17227454 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Nostoc sp. PCC 7120 # 1 327 9 333 345 216 38.0 4e-56 MESIEIKGYKSIRDLKLKLSPINILIGANGSGKSNLLSFFELLKNMYLQRLKEYVALHGG MDKFLFEGSKITDTIYSHLDFGVNGYSFELKAGTEGFVFTKEGLWYANNPYMNNPIDISS FQTESKLNDSSVPQANFIKNYLAGLEKYHFHDTSEHSPFTQWSNIHNDIYRLYDKGQNLA AFLYHIKNDNLQKYNFIVKTVQSIAPYFRDFSFHPNAKGDLRLQWEDRYSSMVYGVNDLS DGTMRFIALSTLFLQPTLPQVIIIDEPELGLHPAAISKLAGLIKSAAAKGCQVIIATQST ELLSNFEPQDVVTVDQINGESHFERLDADQLSQWVDEYTLDELWKLSIISRAQPNT >gi|281304516|gb|ADEF01000066.1| GENE 48 58904 - 60115 1067 403 aa, chain - ## HITS:1 COG:ECs2857 KEGG:ns NR:ns ## COG: ECs2857 COG0451 # Protein_GI_number: 15832111 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Escherichia coli O157:H7 # 8 400 5 315 321 328 44.0 1e-89 MALSKTSKIYIAGHHGLVGSAIWKNLEARGYSQLIGRSHSELDLTNQQAVDDFFKTERPD AVVLAAAFVGGIMANSLYRADFIMQNMMMQCNVISSAYKYGVKKLLFLGSTCIYPKNAPQ PMKEDVLLTSPLEYTNEEYAIAKIAGLKMCESYNLQYGTNYIAVMPTNLYGPNDNFHLEN SHVMPAMMRKIYLAKLIHEDNWEAIRVDMNKRPINPVKALAEQIGKDNVDGECSKERILQ ALKFYGIENNKVTLWGTGSPLREFLWSEDMADASVHILLNVDFKDIIGIEKYSSVFYGTA TDGEVNRNNSEGRGGAIPSLGEIRNCHINIGTGKELTIKQLSELIVRTVGFTGTVVWDES KPDGTPRKLIDVSKLHTLGWTHNVEIEQGVQKLYDWYRQSLQG >gi|281304516|gb|ADEF01000066.1| GENE 49 60230 - 61288 984 352 aa, chain - ## HITS:1 COG:BMEI1413 KEGG:ns NR:ns ## COG: BMEI1413 COG1089 # Protein_GI_number: 17987696 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: GDP-D-mannose dehydratase # Organism: Brucella melitensis # 4 348 2 341 362 467 65.0 1e-131 MTNRKVALITGITGQDGSYLAEFLIDKGYDVHGLLRRSSSFNTGRIEHLYLDEWVRDMKQ SRLVNLHWADMTDSSSLIRIIGEIKPTEIYNLAAQSHVKVSFDVPEYTADTDAIGVLRLL EAVRICGLEKSCRIYQASTSELFGKVQEVPQKETTPFYPRSPYAVAKLYGFWIMKNYRES YGMYCCNGILFNHESERRGENFVTRKITLAAARIAHGLQDKLYLGNLDARRDWGYAPDYV QCMWLMLQQEQPDDFVIATGEYYSVRDFATLAFHHAGIELEWKDKGMNEKGIDKATGKVL VEVDPKYFRPADVEQLLGDPTKAKEQLGWNPRQTSFEELVKKMTEYDLKNVK >gi|281304516|gb|ADEF01000066.1| GENE 50 62478 - 63053 498 191 aa, chain + ## HITS:1 COG:BS_xpt KEGG:ns NR:ns ## COG: BS_xpt COG0503 # Protein_GI_number: 16079265 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Bacillus subtilis # 1 187 1 188 194 176 48.0 2e-44 MKTLIDRILKDGRCYPGGILKVDKFINHQMDPNLMKAIAIEFIKRYSSTEINKILTIEAS GIAPAIVMGLLLDLPVVFAKKKKASTMDNILSTTVFSFTKQREYNVVISKDYLTPQDKVV FIDDFLAYGNAAKGIIDLCQQAGAELVGMGFIIEKTFQHGRKVIEAAGVRCESLAMIESL DDCKIKLKGID >gi|281304516|gb|ADEF01000066.1| GENE 51 63073 - 64449 1167 458 aa, chain + ## HITS:1 COG:VC2712 KEGG:ns NR:ns ## COG: VC2712 COG2233 # Protein_GI_number: 15642706 # Func_class: F Nucleotide transport and metabolism # Function: Xanthine/uracil permeases # Organism: Vibrio cholerae # 15 454 20 458 480 428 55.0 1e-120 MTTSTKPQEPILHHQTDLIYGLHDKPQLREALFAALQHLLAIFVAIITPPLIISNALSFD LHTTGFLVSMSLFVSGVATFIQCHRIGPIGTGLLCIQGTSFSFIGPIIGAGMLGMIGGKI DTELALAYIFTACMFASVVEMFVSRILKYTQKIITPLVSGIVVTLIGMSLIKAGINACGG GAAAEANGTFGSLMNLGLAALVLFAIIFFNRSSNKILRMSSIVLGLAIGCVVAYFLDMIP LDATQDYGGFNIPIPFKYGFRFDISAIISLGLVYLITAIEAYGDITANSLISGEPIQGRT FEKRAAGGILADGFNSMVAAIFNSFPNSIFAQNNGMIQLTGIASRYVGYYIAGALILLGL FPAVGIVFSLIPAPVLGGATLLMFGTVAAAGIKIIAATKINRKAVLVMAISFSLGLSVEM VPDILNQMPETIRNIFSSGITTGGLAAILTNSLIHIKD >gi|281304516|gb|ADEF01000066.1| GENE 52 64668 - 65540 731 290 aa, chain + ## HITS:1 COG:TM1451 KEGG:ns NR:ns ## COG: TM1451 COG0568 # Protein_GI_number: 15644200 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Thermotoga maritima # 16 289 121 391 399 187 39.0 2e-47 MRQLKIQKSITNRSSEALDKYLVEIGRAPLISIDEEIELAQKIKKGGPEGERAKDKLVTA NLRFVVSVAKQYQHQGLTLTDLIDEGNIGLIKAAQKFDETRGFKFISYAVWWIRQSILQA IAEQSRIVRLPLNQVGSLNKINHEINRFEQEHHRRPSITELSDATNIDEEKIGQSMMADG HHVSIDAPFQDGEDNTMLDVMPSGDDSRTDRQVDHESMAQELNTVLNKVLKDREITIIKE CFGIGCHEKGLEEIGDQLGLTRERVRQIREKSIAKLRDSGNAKILMKYLG >gi|281304516|gb|ADEF01000066.1| GENE 53 65626 - 67320 1048 564 aa, chain - ## HITS:1 COG:MA3377 KEGG:ns NR:ns ## COG: MA3377 COG4690 # Protein_GI_number: 20092191 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidase # Organism: Methanosarcina acetivorans str.C2A # 37 515 2 537 574 176 26.0 1e-43 MKRTKQIFQIHEHQTRAIAFIALFVALLFNSQTTNACTNFIIGKNASVDGSVICTYNADD YGLFIGLNHFPAGKHQAGTMRDIYDWDTNVYHGQIPEAAETYNVIGNINEYQVTIGETTY GGREEMVDTTGIIDYGSLIYIALQRSKTAREAIRIMTTLTNQYGYNSEGETFTICDPNEA WIMEMMGKGPGSKGTVWVAIRIPDNAVCGHANQSRIGKFNMKDKKNVLYSKDVVEFARKK GWYTGKDADFSWKEAYAKPDFSGRRFCDARVWSFFNHFQDMSKYLPWALGKDPNAEDMPL WIIPEKKISIQDVQACMRDHYEGTPLAIDSVDIGGGIWQMPYRPTPLKYKVGEQTYFNER PTSTQQSGFTFVSQMRSWLPREIGGLLWFGNDDGNMIAYTPIYCGNTSQPECYHTPGADA VTFSDKNAYWVCNWVSNMVYPRYQQMFPDVKAIRDSLELSYFKKQHAVEEEALRLYKNNK TEAIQYLNQYSNETAQQMLSRWKQLAIFLIVRYNDMAVKPVKNGQFTRTKTGLGSRVKRP GFPASYAKEIVRRTGDKYLVPSEK >gi|281304516|gb|ADEF01000066.1| GENE 54 67360 - 68178 391 272 aa, chain - ## HITS:1 COG:no KEGG:PRU_1066 NR:ns ## KEGG: PRU_1066 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 247 18 267 293 132 35.0 1e-29 MEDILYDYHLADAMYRGNYEDASLMLKYKAAVLKKHGVSEAEFDSSMVYYTRHTRLLQHI YESLSNRMSKDALSLGASASQVNRYQLNSASGDTANVWRDNRSMVLSPYRPFNVSSYTIQ ADSTFKPGDRLFLNFNAQFIYQDGTRDAVAIMAVKFKNDSVATQTLYVSTPNHYTTQISD DNNIGIKEIRGYFLLNNNNPADAYSTTFKLMILTNISLVKIHVQKKKTKQQSDSLNVDST LMYDSLRAAPNRGMQPKRREADASRPVQSVSQ >gi|281304516|gb|ADEF01000066.1| GENE 55 68276 - 68929 464 217 aa, chain - ## HITS:1 COG:CAC2115 KEGG:ns NR:ns ## COG: CAC2115 COG0597 # Protein_GI_number: 15895384 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Clostridium acetobutylicum # 10 194 1 142 154 65 29.0 6e-11 MKRYITDGKLAVIIVVLVLLIDQIIKIAVKTNMALDDSIRITNWFYIRFIENNGMAYGIT FINKLVLSLFRLVAIGVIIFYMTKLLKRPHTKGYIICLSMILAGAMGNIIDSMFYGLIFT PSTPYQVAELVPFGSGYSSFLHGKVVDMFYFPLIVSTWPDWVPHFGGQDFIFFSPIFNFA DACISVGVIILLLFYRKDLENIGSTIQDKETSISKNE >gi|281304516|gb|ADEF01000066.1| GENE 56 68967 - 69347 336 126 aa, chain - ## HITS:1 COG:no KEGG:PRU_1068 NR:ns ## KEGG: PRU_1068 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 125 1 125 126 155 74.0 4e-37 MEQKKRYSDAELEEFQAIINEKLTLARKDYTSMMKQIMNEDGNDTDDTSPTYKALEEGSS SQSKEDLVQMAARQQKFIQGLEAALVRIKNKTYGIDRITGELIPKERLRVVPHATLSVAS KNARKH >gi|281304516|gb|ADEF01000066.1| GENE 57 69410 - 73090 2890 1226 aa, chain - ## HITS:1 COG:CAC3038 KEGG:ns NR:ns ## COG: CAC3038 COG0060 # Protein_GI_number: 15896289 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 19 1224 17 1033 1035 796 37.0 0 MGKRFAEHQGLNLTKTNEEILAKWEKNNIFHRSIKEREGCPQFIFFEGPPSANGHPGIHH VLARAIKDTFNRYKTMQGFHVLRKAGWDTHGLPVELGVEKELGITKKDIDNKASEHYISV EDYNRKCRENVMKFTEEWRRLTEEMGYFVDLDHPYITYDNKYIETLWWLLKQLYNQGLLY KGYTIQPYSPGAGTGLSSHELNQPGCYRDVKDTTVTGLFKLTPESVAQLDEAQDLNSWGD TYFIAWTTTPWTLPSNTALCVGPKFDYVSIQTYNPYSAQPINIIMAYERVSAYLSAEGEV AKDVELPAFSKGDKVIPYKIINHHKGEELEGLHYEQLMPWVKPTEKVDSNAAPFITNYAQ AHPDKVFVAENNKDHFVEMESDAFRVILGDYVTTDDGTGIVHIAPTFGADDAKVAKDAHI PALYLINKKGETRPMVDLQGKYYNLVELDQNFVDKCVNVVNYHKHEGDYVKNAYDPRFNP NGIWDVKASEKADDLNIVMSLEMKMEGSAYKIEKHVHNYPHCWRTDKPILYYPLDSWFIK DTAKKERMVELNNTIRWQPESTGTGRFGNWLESLNDWNLSRSRFWGTPLPIWRDDEKGEK CIGSLAELYDEIEKSVAAGQMSSNPMKEKGFVPGDFSKENYDKVDLHRPYVDQIVLVNDE GKPMYRQSDLIDVWFDSGSMPYAQLHYPFEGEMASGLSLKNAEGQTLTGEDARQAMVQSN YIGTPIPPAFFPADFINEGVDQTRGWFFTLHAIATMVFDSVAFKNVISTGLVLDAKGNKM SKHLGNVKNPFDMIERYGADAVRFYMMTNSSPWDNLKFDEEGVDEVRRKFFGTLYNTYSF FALYANVDDFQPTGCFDKTKLKDAPEIDRWIISKLHSLIKGVEDDLNNFDPTRAGRLIDT FVNDDLSNWYVRLNRKRFWGKEMSEDKLSAYNTLYECLLTISKLAAPFIPFFADQLYADL GGILASVHLDKFPKVDQSLIDEDLEARMEIAQKLTSMVLALRRKVNIKVRQPLQQIMIPA TSDEQKRRIEAVADLVKNEVNIKEVNFIEGQGMLVKKIKCNFRTMGKKFGKLMKGIANYM NNVSQDDIAMLEKNGQLTFSVDQQEVTVSREDVEIVSEDIPGWLVANEGNLTVALEVELT PALKKEGIARELINRIQNLRKENNFEITDRIDVVISPNENSDAAIQDYSDYIKSQVLANQ IKIKKNDGVEVDFDDFQLHILIEKRI >gi|281304516|gb|ADEF01000066.1| GENE 58 73867 - 74004 72 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLEDVYSYPFKDCCTLVTNRSQRIKWSKILEIAELCLLLQGKLAS >gi|281304516|gb|ADEF01000066.1| GENE 59 74110 - 74322 73 70 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSAFEFFCYSNLYKRLISPLFRFQVHGYSLLLLNVLPVENSQYHQAQVFNLGYATKEDIK KDHILLCYSV >gi|281304516|gb|ADEF01000066.1| GENE 60 74399 - 75370 553 323 aa, chain - ## HITS:1 COG:all0004 KEGG:ns NR:ns ## COG: all0004 COG0224 # Protein_GI_number: 17227500 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Nostoc sp. PCC 7120 # 1 320 1 311 315 167 35.0 3e-41 MPSLKEIKTRIASVKNTRKITSAMKMVSSSKLHHAQIQIENMLPYENMLEHILKSFLAST PENDTIFDKKRSEIKRVALVVFASNSSLCGSFNGNVLKLMMQVIEEYRHLGKDNIVIYPI GRKVFDKVKKLGFTTAGNFNHLADKPNAHECQKVAREITKKFAQGELDHVELIYHHFKSA GTQILKRKTFLPIDLSTELGVDNDRDLSSDLVTAKAQEYLRKNKKTVSKKAAEEAKPLND DFIVEPDIRTVLSSLIPKQLHHMFYTALLDSVASEHAARMVAMQTATDNADELLSSLNLQ LNKSRQQAITNELLDIVGGSINN >gi|281304516|gb|ADEF01000066.1| GENE 61 75373 - 76962 1622 529 aa, chain - ## HITS:1 COG:TM1612 KEGG:ns NR:ns ## COG: TM1612 COG0056 # Protein_GI_number: 15644360 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Thermotoga maritima # 4 527 2 502 503 568 55.0 1e-162 MSDKIKPSEVSEVLLQQLKGIQTDLKFEEVGTVLNVGDGVARLYGLRNAEANELLEFENG TMAIVMNLEEDNVGCILLGPTSGIKEGMTAKRTHRIASIRVNDSMLGRVINPLGEAIDGL GELDLTESFEMPLERKAPGVIYRQPVKEPLQTGIKAVDSMIPIGRGQRELIVGDRQTGKT AIALDTIINQKSFYEEGKPVYCVYVAIGQKASTVANLVQILKEHGALPYTIVVSATAADP AAMQYYAPFAGAAIGEYFRDRGESALVVYDDLSKQAVAYREISLILRRPSGREAYPGDVF YLHSRLLERAARINDQQEVAEMMNDLPESLKGHVKGGGSLTALPIIETQAGDVSAYIPTN VISITDGQIYLETNLFNQGFRPAINVGISVSRVGGSAQIKSMKKVAGTLKIDMAQYRELE AFSKFSSDMDSVTAMTLDRGRKNNQLLIQPQYSPMPIGEQVAIMYCGVNSLFADVPIDSV RECQDTFLETMRTKYADVLKTLASGQLTDEAIETIKSTMADVTAQYQAS >gi|281304516|gb|ADEF01000066.1| GENE 62 76980 - 77516 434 178 aa, chain - ## HITS:1 COG:RC1238 KEGG:ns NR:ns ## COG: RC1238 COG0712 # Protein_GI_number: 15893161 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Rickettsia conorii # 1 177 1 178 184 71 27.0 1e-12 MNTGVISVRYARALLKCALEKHVEDNVFQEMLALSHSYAHISDLRQTIDNPMLHQDKKQE LIELACGTTPTQLTKDFIRLVLSAGRENILQYIFTSYITLYRQQKHIISGKLITATAVTE DIEKRMEAVVHSQSKGTINFQSEVNPDIIGGFILEYDSYRMDASVQTKLNKILKQLKK >gi|281304516|gb|ADEF01000066.1| GENE 63 77525 - 78043 468 172 aa, chain - ## HITS:1 COG:BU004 KEGG:ns NR:ns ## COG: BU004 COG0711 # Protein_GI_number: 15616634 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Buchnera sp. APS # 20 170 12 161 161 69 31.0 3e-12 MENLPSILTPDLGLLFWMFLAFLVVFFVLSKYGFPVIINMVEKRKSYIDDSLRKAHEASE RLAKIQQEGDAILHDAREKQAVMLKEAAATRDSIVEKAHVKAKDESSRLISEARTEIDIE KQNAIRDIRSQVAELSVQIAEKVIREELASKDSQMELINKLLNDISVEKNQA >gi|281304516|gb|ADEF01000066.1| GENE 64 78058 - 78300 332 80 aa, chain - ## HITS:1 COG:no KEGG:PRU_1195 NR:ns ## KEGG: PRU_1195 # Name: atpE # Def: ATP synthase F0 subunit C (EC:3.6.3.14) # Organism: P.ruminicola # Pathway: Oxidative phosphorylation [PATH:pru00190]; Metabolic pathways [PATH:pru01100] # 2 80 1 79 79 91 86.0 7e-18 MMISTLLAAEGLAQLGCGIGAGIATVGAGIGIGRIGGNAMDAIARQPEASGKITSNMILT SAFIEGCALFAIAACAFLIK >gi|281304516|gb|ADEF01000066.1| GENE 65 78351 - 79397 670 348 aa, chain - ## HITS:1 COG:BMEI1546 KEGG:ns NR:ns ## COG: BMEI1546 COG0356 # Protein_GI_number: 17987829 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Brucella melitensis # 107 342 50 275 277 86 32.0 8e-17 MKKIRTILFCLSLLLAPVQLMASNSEGEALNIPEIVLEHLSDSYEWHIATFKGKHLSLPL PIIVRSETTGEWYVGTAKNLPKQFFFDEEHHGKIYEHVGNGETARPIDLSITKVVVQIWI VVVVLILVFLSCAKWYKNADEKTETPKGFVGVMEMFVMTIHDDLIRPSVGEKNYQRFAPY LLTVFFFILTCNLIGLIPIFPGGTNITGNINITLFLAVCSMIAINCFGSKEYWKDIFWPH VPLFLKVPVPLMPVIELFGVFTKPFALMIRLFANMMAGHAVILSFTCVIFLGWNMGVGYG LGLNLFSAVMLLFMNLLEVLVAFIQAYVFTMLSAVFIGLAHPEPETSI >gi|281304516|gb|ADEF01000066.1| GENE 66 79419 - 79796 235 125 aa, chain - ## HITS:1 COG:no KEGG:PRU_1197 NR:ns ## KEGG: PRU_1197 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 3 113 15 124 130 73 43.0 2e-12 MTQSFLLLTTLTLIGVLVMKIGKVDHMVTPLIVGLTFALTIELADILVWSRVAQKQADYL PTFFMAVSSVRTLAAIGVMFVFFLVMEKATILVSCLTFMSYYLTILIHHSLFFIAKSKAQ SSETK >gi|281304516|gb|ADEF01000066.1| GENE 67 79839 - 80081 281 80 aa, chain - ## HITS:1 COG:HI0478 KEGG:ns NR:ns ## COG: HI0478 COG0355 # Protein_GI_number: 16272425 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Haemophilus influenzae # 4 80 6 82 142 57 33.0 6e-09 MLRLKIISPEKRIFDGDVNRVTVPGTLGEFEILVNHAPIISSLESGKVSYEIATGELKQL EIESGFVEVQKNVVSLCVEL >gi|281304516|gb|ADEF01000066.1| GENE 68 80113 - 81642 1755 509 aa, chain - ## HITS:1 COG:RC1235 KEGG:ns NR:ns ## COG: RC1235 COG0055 # Protein_GI_number: 15893158 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Rickettsia conorii # 1 503 27 498 499 605 63.0 1e-173 MSQVNGHISQIIGPVIDVYFDTKGQDPESVLPKIYDALIVKREDGSDLVIETQQHIGEDT VRCVAMDNTDGLRRGLEVIATGSPITMPSGDQIKGRMMNVIGEAIDGMEQLSKENPYPIH RQPPVFEDLSTHKEMLATGIKVIDLLEPYMKGGKIGLFGGAGVGKTVLIMELINNIAKGH NGYSVFAGVGERTREGNDLIRDMIDSGVIRYGEKFKKAMDEGKWDLSLVDPEELQKSQAT LVYGQMNEPPGARASVALSGLTVAEEFRDRGVNGDGQGGDIMFFIDNIFRFTQAGSEVSA LLGRMPSAVGYQPTLASEMGTMQERITSTKNGSITSVQAVYVPADDLTDPAPATTFTHLD ATTELSRKITELGIYPAVDPLGSTSRILDPLIVGKEHYNCAQRVKQILQHYQELQDIIAI LGMDELSDEDKQIVNRARRVQRFLSQPFTVAEQFTGLKGVMVSIEDTIKGFNMILDGEVD DLPEQAFMNVGTIEDAIEKGKKLLAAAKS >gi|281304516|gb|ADEF01000066.1| GENE 69 81804 - 82781 934 325 aa, chain - ## HITS:1 COG:BH3164 KEGG:ns NR:ns ## COG: BH3164 COG0205 # Protein_GI_number: 15615726 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Bacillus halodurans # 7 325 4 319 319 280 47.0 2e-75 MKQITTIGILTSGGDAPGMNAAIRAVTRAGICNGFKIKGIYKGYDGLINDEIKDFTTENV SGIIMSGGTILKTARSLEFLTPEGRKKAYENIQKHSIGALVVIGGNGSLRGAIEFASEYD VRCIGLPGTIDNDLYGTDSTIGYDTTLNTIVECVDRIRDTAQSHERIFFVEVMGRDAGFL AQNSAIASGAEAAIIPEDSTDVDQLGHFMERGIRKSKRSCIVIVSESPKCGALYYADRVK KEFPGYDVRVSILGHLQRGGSPSAHDRILASRTGVGAVEAIMQGQRNIMIGIKNNEIDYI PLTEAIRSDKPFDKKLIKVLDELSI >gi|281304516|gb|ADEF01000066.1| GENE 70 82974 - 84167 528 397 aa, chain - ## HITS:1 COG:all2288 KEGG:ns NR:ns ## COG: all2288 COG0463 # Protein_GI_number: 17229780 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Nostoc sp. PCC 7120 # 65 175 2 109 343 89 38.0 1e-17 MAIFRHPTHVWLGDLRLGVVNPWLVVLGWGRGGRPVESVGVITHIEKKDRFVDTSKITSM EKIASFAILVAVYNGSAYLKRCLDSLLQQTLKDIQVICIDDGSTDNSWEILQSYTAIDQR IEILHLSQNYGIAHARNEGIKHINARYTTILDCDDTFAPDALEQALQVFEKHPQVDCVLF KLLTLGEDNSTAQEYDMDFFEERSGYEAFKDSLTWKIHGVYAAKTALFKQFPYDDTCKTY SDDNSTRLHYLFSKQVSCCHGKNYYHYNPLSVTRAISGSRFDYLRANESMKKQLIQLNVS DDVLTIYENVRWLVLIDLYYFHYSYRKQLSAEDSAMGMRELHRIWSGIEVHRLYKRLKYK FGYMPLRFSWRMFRIQEELYFTLRSIFRKDIQQTKNQ >gi|281304516|gb|ADEF01000066.1| GENE 71 83978 - 85462 1201 494 aa, chain - ## HITS:1 COG:no KEGG:PRU_1515 NR:ns ## KEGG: PRU_1515 # Name: not_defined # Def: polysaccharide biosynthesis protein # Organism: P.ruminicola # Pathway: not_defined # 3 481 2 480 485 398 45.0 1e-109 MTNENRNKTYTHILKYTGLFGGVQGLGILVGIVRNKLVALLLGAEGIGLMSLFNSTTKLI SDSTNFGLSMSAVRELSAAFEQHDETYMRRCIDSVRLLSMLTALLGMAVCMVISPILSRW VFGWGDHSLHFVLLSIVVFLMAVTGGELAILKALRQLKSLAKISFLNIVGALITSIPLFY IWRQAAIVPSLIIVALTQMLLTIYYSHRQYAIHFNWSKTLLLQGSPMLKIGVAFVMAGIL GSGADFLIRRYLNVLGSVETVGLFNAAYMMTMTYAGLVFSAMETDFFPRLSSIKHTGALL NETVNSQIEVSLLLISPMLVVFMVGVPVLLPLLYSREFVSLQVMVQTLVLAMYWRAVKLP IAYIPLAKGNSRLYLLVEAIYDVVLVLAVIAGFHYYELLGAGIAITLVAVLDFLMLYYFM HTTYQYNISYSVWQYLGIQLMFGLVTYGLVLSTHGWLYWGGGVAVVLLSLWVSLRILRKK TDLWTHLKLRVWKK >gi|281304516|gb|ADEF01000066.1| GENE 72 85517 - 85651 62 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRLNSRVVSYRQGNNDSEPIGGGNYQRMLAASYSHKSCYFLLKD >gi|281304516|gb|ADEF01000066.1| GENE 73 85670 - 85939 63 89 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTFTLFAHATNVTRNIVRISSDLFIANARKPFVQRTSERNSCGDMTRTCDLQVMSLASYQ LLHSAMLFLICGCKGKTFFLKTKIFLYLI >gi|281304516|gb|ADEF01000066.1| GENE 74 86137 - 86730 682 197 aa, chain + ## HITS:1 COG:mlr7895 KEGG:ns NR:ns ## COG: mlr7895 COG1309 # Protein_GI_number: 13476546 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Mesorhizobium loti # 3 89 6 92 193 60 34.0 3e-09 MSISKTRQILVDVARKLFAKNGVANTTMNDIAMTSGKGRRTLYTYFSSKEEVFYAVIESE LERLSDKLDEVATKKIAPQDKIIELIYTHLSMIRETVVRNGNLRAEFFRNIWMVEKVRKK FDADEIDLFRRVYSQGRADGDFDIDNVNLIAEITHYCIKGLEVPFIYGRLGHGLTEESSK PLVAKMVYGALGKNNSK >gi|281304516|gb|ADEF01000066.1| GENE 75 86789 - 87541 290 250 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 7 250 4 242 242 116 33 5e-25 MGLLTGKTAIVTGAARGIGKAIAMRFAQEGANIAFTDLVIDDEHGGKETERELSALGVKA KGYAGNAADFTNTAELVAQIKEDFGSVDILVNNAGITKDGLMLRMTEAQWDAVINVNLKS AFNFIHACVPVMMRQRQGSIINMASVVGVHGNAGQANYAASKAGMIALAKSVGQEMGPKG IRANAIAPGFIDTAMTQSLPENIRKEWISKIPLRRGGTVEDIASCALFLASDLSSYISGQ VIQVDGGMNM >gi|281304516|gb|ADEF01000066.1| GENE 76 87708 - 88388 169 226 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 4 210 84 279 285 69 25 6e-11 MLPLYEDNHIIIVSKRSGEIVQGDKTGDLPLSETVKQYIKEKYQKPGNVFLGVVHRLDRP VWGLVVFAKTSKALTRLNKMFREGEVHKTYWAITKEAPPAAEGVLTDWLVRNERQNKSYA HSQETPNAKKAVLKYKVIAHSDHYHLLEVQLMTGRHHQIRCQLANMGCPIKGDLKYGAKR SNPDGSICLLARSIAFVHPVSKENIVVEAPLPPQDRLWEALASAVI >gi|281304516|gb|ADEF01000066.1| GENE 77 88399 - 89106 224 235 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 1 215 32 274 863 90 30 2e-17 MKKIVIAIDGFSSCGKSTMAKDLARQLGYIYVDTGAMYRAVTLYALRHHLFLENGAVNEP ELQQHMPNIHISFKLNPATSKPDTYLNDESVEQEIRSMRVSQHVSKIAAIPFVRTALVAQ QQQMGKDKGIVMDGRDIGTVVFPDAELKIFVTASAEVRAQRRFDELQQKGMPAQYDDILK NVQERDYIDSHRQTSPLCKAEDAIELDNSHLTIPEQQQWLVEKVNEQLQQSSKMG >gi|281304516|gb|ADEF01000066.1| GENE 78 89181 - 89822 692 213 aa, chain + ## HITS:1 COG:no KEGG:PRU_0954 NR:ns ## KEGG: PRU_0954 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 36 212 46 222 223 132 45.0 7e-30 MTNKFFSSNSSYRFLLAAVCLVVALQVSAQRRHTDYQVVENVVLYRGTPLLTADPYSFVD LGYGYAKDTNHVYYLGEVLKYVDPYSFRLKRMSPHDGYRPYESPFYHSRGYKIMSNVVLF NGHKVYDASVNSFRDLGGGYAKDAFNVYFMGEKMSGGSTHSFQYLGDGYAKDSFDVYFLG RKVNGASANSFRIVGEGYAEDTFNTFYQGQKIN >gi|281304516|gb|ADEF01000066.1| GENE 79 89946 - 91931 1467 661 aa, chain - ## HITS:1 COG:VC0613 KEGG:ns NR:ns ## COG: VC0613 COG3525 # Protein_GI_number: 15640633 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Vibrio cholerae # 100 292 208 435 637 142 34.0 3e-33 MKRFILLLLTFVIASNTMDAKFKDLLPRAKFAKKLNTKGFRLSRAIQIGDSSNTLILKEF FTEHGCTIKQNARAKVVVNLTDRIEGTEDYHLAGYENEAYRLTIYPSTIEIKAVSPVGVI RATQTLEMLAEGYGSTPCLEAVDIIDYPAFKLRGFMHDVGRSFISIDELKKQIRLLAHFK VNTFHWHLTENQAWRFEVKAFPQLTASSAMTRFPGQYYTQQQCRDLESYALRYGVKIIPE VDMPGHSEAFVRAMGHSMQTDQGVAELKIILKELVECFPHAPYIHIGGDEQPITYPDFLQ TMTNWVRKLGKKAVVWIPNQAGFAQVDMVQLWSTAGRLVANIPNIDCRYNYINHFDVFAD IVGIYKSNIYYQQKGSPEVAGEICATWNDHKIDGERNILKYNNFYASVIASASRAWQGGG KQYIEQGGTILPNTGDELEDFSDWETRFLFHKHHCLRNEPIPYVRQANVRWAIASSLSDN QPIDEQVVTGAGIYLNHTWRKTVPAIYDDKNSNDTAYVWTYVYSPKRQTAGALVELQNYS RSEQDVAPEDGKWDRKGSVIYWNDKELLPPLWTHAGKRVANETPMGNENLTARPPLILQL HKGWNKVVMVLPNTDADGIRLDKWMFTFVITNKQGTKALSGIKYDPHKGGNMDNHLLPVR Q >gi|281304516|gb|ADEF01000066.1| GENE 80 92233 - 94839 1592 868 aa, chain - ## HITS:1 COG:no KEGG:Cpin_3424 NR:ns ## KEGG: Cpin_3424 # Name: not_defined # Def: TonB-dependent receptor # Organism: C.pinensis # Pathway: not_defined # 105 808 66 786 847 205 26.0 5e-51 MKKVLFLILMCALVFNVSAQRITHEFRNVSMSDALKFIQAQNTHYKIVFIYNELEDFKVT ASVQNKRVGDAIQQLIGFYPILMTIGESNDIYVECVQKAERKYIGHLVNRNNRPIEFANV ALLNPKDSSFITGGVTNSDGLFVIPCDVHPVLARLSFVGYRTAYVRFSQNRVGTLRLYED TKTLKEVKVTTLRPTVTYKGDRYSVNIGNTILGVGNTAESLLTQLPGVWLNGNDISINGI SGAQVMIDDRSIHLSGSELVAYLKGIRSETIDKIEIIPNPSAEFAAQGMGGVLRILTKER QSGTQLVVGGSVDFINYKAVRPYVSYGYGKGKFGFDISANGTFGKGYLCADELTKNYEKL VNYQNNIVDRMDDVIGTINSNIYYDFNARNKFALNLNYSHWYKDEHVNGYTLVDGTNAPK TVCTDIKHETIQNQNTLSASMNFTHKFGQDDRNKLLVLADVTKSFYPNDDEFEYKNYDRN SNLLSTENLRHHQSVPFFILSGETRVEWDFLKHGSLMAGIKCSHSLKDNEFEEQTLTNGS WSSSADKSYSFKYAEDLQAAYLKYDLSGKKWNLTAGLRGEYNYAKADGYDFSYRHFDLFP SLYYTYRLSKWHTMIFSASRRTQRVGFIRLMPYRYYHSRYTLNMGNPNLRPDYSNHISIT YQLAQKYNLTLTHVWSNNGLDNYNRTETVGGQAMTVASYVDGVKNRLTNLNLYVPINVAS WWSIVNQARVSFDKYITSETSVDNFDWKIYTQHTFVLPLDIRMQLLYRYISESKSAYGKS RDYHQLDFSCMKTFFNDKLTCKLSVNDLICGQKNWSYTLTNKIYRKTYMYGRFIPSFAFS IYYTFTKGKRKQHDSIERSNNDEKMRAM >gi|281304516|gb|ADEF01000066.1| GENE 81 94836 - 95498 422 220 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881604|ref|ZP_06290273.1| ## NR: gi|282881604|ref|ZP_06290273.1| hypothetical protein HMPREF9019_0434 [Prevotella timonensis CRIS 5C-B1] # 1 220 1 220 220 418 100.0 1e-115 MEKTELLLQMMEHLHEYTHEQWEELLEDEECRQLYSLLSKTKSAASASENDSRLTEEDVD KEWKRLAHEYPVKAQVVMLWRKVAAVFIGVLLVSGIAIATISTGFFGCRSTNGHSAAGNN AKESRTVVAADTVRKDTIAVPAVKLFDNVPLENILAELSNHYHINVVYRNEDVKQLRLFF EWNPSYPIEKVVEMLNHFKTLQFQLEENQLIVEPQSTTEP >gi|281304516|gb|ADEF01000066.1| GENE 82 95485 - 95994 323 169 aa, chain - ## HITS:1 COG:no KEGG:Tbis_1154 NR:ns ## KEGG: Tbis_1154 # Name: not_defined # Def: ECF subfamily RNA polymerase sigma-24 # Organism: T.bispora # Pathway: not_defined # 7 163 45 199 201 72 33.0 6e-12 MTDRKQLASLFKQHYREMYRLASIMLHDDAESKDIVHDVFAYILESGKDLKADTAVAYLM TSVRNRCLNHIRNMEIQERVERLYLLDQELEQCQEPRKLEEEIKALEKELERIQPPRCRE ILLMHYHVKRTFKEIAQMMGISETAVYKHLRHAMKQLREQLKKGRNGKD >gi|281304516|gb|ADEF01000066.1| GENE 83 96253 - 96372 77 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSEPLYQYSESCIAIISKFNELLFHNKTKLQLFSLNEA >gi|281304516|gb|ADEF01000066.1| GENE 84 96740 - 96943 64 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFPSPKSQCFRLKRRLFCENQPIFVYRLPIDFFYFEDFRWRFFGKITGQKYCFESAFVGS NLTSFKY >gi|281304516|gb|ADEF01000066.1| GENE 85 97104 - 98048 893 314 aa, chain - ## HITS:1 COG:no KEGG:PRU_1827 NR:ns ## KEGG: PRU_1827 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 314 3 316 316 345 50.0 1e-93 MKKAAFVLFSLFLVSTAYAQESQTTYNFLRVPMSAHAAALGGDNVSVIEDDESLVFHNPA LLTSVSDKTLNLNYLNYMSGVNMLSVAFNKLIKERASVALAAQYVDYGKMKQTTAENVQI GEFSAKDIVLSGYFSYMLSDLWSGGISAKLLTSYVGGYNSLAMGIDVGINYYNPDKGWSA SLVAKNMGGQLKAYDDNYESMPLDVQLGVSKRLIHTPLRFHATLVDLNHLNYKLIHHLVA GIDILFSDQVWVGAGYNFRRANEMSITSIDEESNHGAGFSCGAGINLHRFKINLAYGKYH VSSSSVVINAAYQL >gi|281304516|gb|ADEF01000066.1| GENE 86 98192 - 98908 658 238 aa, chain + ## HITS:1 COG:no KEGG:BF3746 NR:ns ## KEGG: BF3746 # Name: not_defined # Def: TonB # Organism: B.fragilis # Pathway: not_defined # 5 238 4 226 227 132 36.0 9e-30 MIVHQKSDKPSLEESKTTGFLLGLILVLSLLFVGFEYNSQPQEDTSLEDMLDELAQDIEL HPAIDEKEMVSTASQPTTKVVTDRIKAVDAPLKQQIDRLLPNTASPLLIGDGSAEALNAK ISEALPPIPLVNNQSQNIRIVEQMPEFPGGGSAFVQWLTSQLHYPPVAQSKKVQGKVVVS FIVNKDGSIADIKLEKSVDPYLDREALRVIRMMPNWTPGVQNNRPCRTMVAVPVVFKL >gi|281304516|gb|ADEF01000066.1| GENE 87 98934 - 99908 1032 324 aa, chain + ## HITS:1 COG:MA0606 KEGG:ns NR:ns ## COG: MA0606 COG0142 # Protein_GI_number: 20089495 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Methanosarcina acetivorans str.C2A # 24 242 30 250 324 188 44.0 1e-47 MMTSNEMLKLINEQLERLSDNREPRHLYEPIEYVLSLGGKRIRPILMMLAYNLYQEHPEE ILMPACAIETYHNYTLLHDDLMDCADLRRGCATVHKRWDANTAILSGDSMLVLAYQRMAT CRADYLKEVIDLFTQTALEIGEGQQYDMDFEKRDDVTEDEYIEMIRLKTSVLLACALKIG AILGGASQEDAENLYRFGEKIGLAFQLQDDYLDVYGDTKVFGKAIGGDIISNKKTYMLIN AFNLATPKQRAELTEWTQKEQFDKQEKIEAVTALYNAMGIEQLAKDKIAYYFEESKKYLE AVKLPAERKQELLSYANQLMNRVK >gi|281304516|gb|ADEF01000066.1| GENE 88 100031 - 100864 742 277 aa, chain + ## HITS:1 COG:VC0103 KEGG:ns NR:ns ## COG: VC0103 COG0084 # Protein_GI_number: 15640135 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Vibrio cholerae # 10 271 2 253 255 199 39.0 4e-51 MSNAQSVKFVDTHAHLDGEEFKDDLPEVIARAQTAGVGKIFVPAIDLAHFPDVMRVSRSY PDVVYPMIGLHPEEVKEDWEKVLEEMKCLLQQNLQAPDDNPRIIAVGEVGLDYYWSREYE GEQLKAFEEQVKWSIAFGLPLMIHCRKAQNEMVKLLRKYEKDLPGGVFHCFTGNDKEAAE LLTFERFALGIGGVLTFKSSHLREMLPANVPLNRIVLETDSPYMAPVPMRGKRNESAFVA YVMKQLAESYKIPEEEVVRQTNANVQRIFGIRMDDML >gi|281304516|gb|ADEF01000066.1| GENE 89 100869 - 102116 992 415 aa, chain + ## HITS:1 COG:no KEGG:RB2501_03100 NR:ns ## KEGG: RB2501_03100 # Name: not_defined # Def: hypothetical protein # Organism: R.biformata # Pathway: not_defined # 39 410 1 351 354 64 24.0 8e-09 MRLLNAIFALLFFSTTVQAAETDSLHHYNYSLHVMPGKILALDKYAAKWIRETNNLSIAA EIGRVALPTDSDAYASDFGYPSLTFGVRYMFNHQVRLRRSPDTAWGMAEMVDYDSRLGNT LSLYGKFYRPFARHQHWETAYSLSFGIGYSHTKYNKQNNIDNELIGTNALIYFGAGVHAT YHLNEQWGIRGGLEFVHHSNGALYRPNKGSNSFGTSIGVVYEPYYNLLIHRTKAYSPQPF ERYWYLNLSAGMGAKTMLEDWLTTQFRTPSSHPDYRTEHFKVYAAYSVQADVMCRYARRW ASGIGIDWFYGTYASHIADLDAQQGNVAKHSPWSLGIAAKHEVFYHQLSLRMSFGWYLHR QMGYNALFNESRFYERIGLHYTFSSAGGLKLGINIKAHETKADLTELVIAYPFRL >gi|281304516|gb|ADEF01000066.1| GENE 90 102718 - 103374 546 218 aa, chain + ## HITS:1 COG:AGl2950 KEGG:ns NR:ns ## COG: AGl2950 COG0603 # Protein_GI_number: 15891587 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 5 217 3 218 236 194 47.0 1e-49 MEKDSLIIVSGGMDSITMLYEYQQRIAIGVSFDYGSNHNQKEIPLAKMHCERLGIRHIVI PLSFIHDYFKSSLLEGDDAIPEGHYEEENMKSTVVPFRNGIMLAVGCGLAVSNHLKYVMI ANHGGDHTIYPDCRPAFIDSFSQAMTAGTFEGITILAPYTRISKGEIALRGKKLGINYAE TWSCYKGGDKQCGKCGTCVERKEALAFAGIKDDTPYEY >gi|281304516|gb|ADEF01000066.1| GENE 91 103461 - 103671 213 70 aa, chain + ## HITS:1 COG:no KEGG:BF3596 NR:ns ## KEGG: BF3596 # Name: not_defined # Def: 6-pyruvoyl-tetrahydropterin synthase # Organism: B.fragilis # Pathway: Folate biosynthesis [PATH:bfr00790]; Metabolic pathways [PATH:bfr01100] # 2 67 1 65 110 90 63.0 2e-17 MIYCVSKRMEISAAHRLSLSYESKCQCLHGHNWIITVYLFKKDKLNGDGMVFDFTHIKKA IHDQLDHAYI Prediction of potential genes in microbial genomes Time: Sat May 28 07:53:36 2011 Seq name: gi|281304515|gb|ADEF01000067.1| Prevotella timonensis CRIS 5C-B1 contig00041, whole genome shotgun sequence Length of sequence - 749 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 17 - 90 87.1 # Ala TGC 0 0 - TRNA 431 - 507 83.3 # Ile GAT 0 0 Prediction of potential genes in microbial genomes Time: Sat May 28 07:53:37 2011 Seq name: gi|281304513|gb|ADEF01000068.1| Prevotella timonensis CRIS 5C-B1 contig00004, whole genome shotgun sequence Length of sequence - 1605 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 134 - 1435 808 ## BVU_1598 transposase + Term 1463 - 1499 1.1 Predicted protein(s) >gi|281304513|gb|ADEF01000068.1| GENE 1 134 - 1435 808 433 aa, chain + ## HITS:1 COG:no KEGG:BVU_1598 NR:ns ## KEGG: BVU_1598 # Name: not_defined # Def: transposase # Organism: B.vulgatus # Pathway: not_defined # 1 431 1 424 429 345 44.0 2e-93 MTKVAIKNENITSFGGIHHIMDVFSKLGFEKLTESVLGKRGSSGKAFSHGSIFGSLFFSY LCGGECLEDINVLIGQFKQRPDTLLPGADTVGRGLKELAEENIIYKSEISGKSYGFNTAQ KLNTLLLRMIRRMRLIKVGSHVDLDFDHQFVPAHKFDAKYSYKQEFGYFPGWASIGGIIV GGENRDGNTNVRFHQEDTLRRIMGRVTSELGVVIERFRADCGSFSKEIIQTVEQRCNTFY IRAANCGSRYEDFRQLKEWKSVEVGYEKCDVTSVSMDNLIEGKSYRLVVQRSPLKDKDGK QQTDMFGVIYTYRCILTNNWMSTEKDIITFYNERGASEKNFDIQNNDFGWSHLPFSFMAE NMVFMMVTAMLKNFYLYLIRNISEKVKPLKKTSRLKAFILHFVSVPAKWVRTGRQNVLNL YTNKTYYSEVFLE Prediction of potential genes in microbial genomes Time: Sat May 28 07:53:44 2011 Seq name: gi|281304508|gb|ADEF01000069.1| Prevotella timonensis CRIS 5C-B1 contig00035, whole genome shotgun sequence Length of sequence - 5504 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 77 - 161 69.2 # Leu TAG 0 0 + Prom 86 - 145 80.4 1 1 Tu 1 . + CDS 319 - 1224 833 ## gi|282881617|ref|ZP_06290283.1| hypothetical protein HMPREF9019_1132 + Term 1313 - 1356 0.7 2 2 Op 1 . - CDS 1333 - 2256 697 ## COG2996 Uncharacterized protein conserved in bacteria 3 2 Op 2 . - CDS 2272 - 3030 377 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 4 2 Op 3 . - CDS 3027 - 5159 1712 ## COG0475 Kef-type K+ transport systems, membrane components - Prom 5245 - 5304 3.0 Predicted protein(s) >gi|281304508|gb|ADEF01000069.1| GENE 1 319 - 1224 833 301 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881617|ref|ZP_06290283.1| ## NR: gi|282881617|ref|ZP_06290283.1| hypothetical protein HMPREF9019_1132 [Prevotella timonensis CRIS 5C-B1] # 12 301 1 290 290 535 100.0 1e-150 MKVLLKICPTLMLALFTCVAFAQTHVGMTVKFPADIDDHLYCYHDYPYTGKPLQGAVKSI TLESEDQKAVYSFDKAGRLTGLSNYFSGKEMQYKHYKYDKQGRPVKKEYMDNGNKYSAIL IPDEFGNPLERRYKEGGYKETTIFSYDFAKRQVTAKATDGDYGKEWTYFFDEKGRVIRRE KPGKNLSKSVTTYAYNDQDQLVKQTDHFVKDGYYSYEEETTVQTISYDERGFISRKDKAT SWTVQDKEKNGKLKSEVRKGDKKSFVLYSDYELDGHGNAVKNTINHNGKKPETVVRSIIY Y >gi|281304508|gb|ADEF01000069.1| GENE 2 1333 - 2256 697 307 aa, chain - ## HITS:1 COG:PA1116 KEGG:ns NR:ns ## COG: PA1116 COG2996 # Protein_GI_number: 15596313 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Pseudomonas aeruginosa # 31 302 4 277 279 244 45.0 1e-64 MKYNQQKQHKAHTGEETLEQAHAPEHSWVRLGDYNRLVILREVEFGLYLDGGDEGEILLP KRYVPAHYTIGDALDVFVYLDQDERLVATTETPLAKVGEFAFLSCSWVNEYGAFLNWGLM KDLFCPFREQKKRMEIGHQYIVYVYVDEESYRIVSSAKVEHFLSSDKPLYKSGEEVDILV WQKTDLGFKVIIDNRYGGLIYSNQIFRPVHTGDRLKAYISMVREDGKIDVTLQPFGQKQT ENFVEELLQYLRSHGGYCELGDKSDAELIKQRFHVSKKTYKKAVGDLYKRHLIELEPDGI YLRKAHK >gi|281304508|gb|ADEF01000069.1| GENE 3 2272 - 3030 377 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 217 1 219 245 149 38 4e-36 MIDIQGVTKSFGHLQVLKGIDLHINKGEVVSIVGPSGAGKTTLLQIIGTLDQADQGQIMV DGVRVDQLSSKKLSDFRNQHIGFVFQFHQLLPEFTALENVMIPSLIAGKSQVETKQRAQE LLQYMGLLDRARHKPNELSGGEKQRVAVARALVNHPAVILADEPSGSLDSKNKTELHQLF FDLRKEFGQTFVIVTHDEGLASITDRTIHMKDGRLIQTTPCQAENDAQCQPSIQCSDDET LYPQEHSQESSI >gi|281304508|gb|ADEF01000069.1| GENE 4 3027 - 5159 1712 710 aa, chain - ## HITS:1 COG:BH2844_1 KEGG:ns NR:ns ## COG: BH2844_1 COG0475 # Protein_GI_number: 15615407 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Bacillus halodurans # 7 396 5 388 388 273 39.0 1e-72 MISAYFPITDPTLVFLVVLSIILLAPIIMGKLRIPHIIGMVLAGVVLGKYGLNILVRDNS FELFGKVGLYYIMFLASLEMEMEGVKKNKYRMLAFGLLTFAVPLVLVYFSCVYILHFSAQ ASLLLGCIMSSNTLIAYPIVSRYGLQRKPSVMLSVGATMLSLLLALVLLAGIVSSAESGS DVGFWLLLTLKFAIYCAAMILLIPRFTRYFLRRYSDAVMQYVFVMAMMFMSAALSEAVGF EGIFGAFFAGLILNRYIPAVSPLMNRIEFIGNALFIPYFLIGVGMLINLRILFAGGQVVF FLLVITFVGTVGKMLAAYLASHRFQLPLSSGTMMFGLTSAHAAGAIAMVMVGMRIELAPG EFLVNDEILNSVVLMILLTCIISSLITERSAQKITLRDQQIASDEEASLDDEHILVPIKY PNYAEQLIGLAILMKSRKLNRPLTAINVVYEDEQMRVNQEKGKHLLEQVTRYAAGSDVQV QSQVRIAVNIANGIKHAFQEFHANEIIIGMHTHAEVSKKFWGQFHQSLFNGLNCQIIMAR LMQPLNTLRRIVVAVPSRAQFEPGFYRWLERLLRMATHLDCRIEFHGRQDTLALISAYIQ EKHPVVRAAFKDMEHWNQFPQLASTIADDHMFVVITARKGTVSYKNALEELAEEIRQNFS GKTILIVFPDQYGAVEGDMTYSQSQHQEERSAYDVVGGWIKNKIEKTKKI Prediction of potential genes in microbial genomes Time: Sat May 28 07:53:57 2011 Seq name: gi|281304507|gb|ADEF01000070.1| Prevotella timonensis CRIS 5C-B1 contig00040, whole genome shotgun sequence Length of sequence - 517 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 34 - 75 5.6 1 1 Tu 1 . - CDS 163 - 312 80 ## - Prom 396 - 455 7.5 - TRNA 225 - 299 75.9 # Arg TCT 0 0 Predicted protein(s) >gi|281304507|gb|ADEF01000070.1| GENE 1 163 - 312 80 49 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKCWFRSSVGLEQQPSKLWVLGSNPNGITFFEIIIENLLQAKRQNIFK Prediction of potential genes in microbial genomes Time: Sat May 28 07:54:02 2011 Seq name: gi|281304505|gb|ADEF01000071.1| Prevotella timonensis CRIS 5C-B1 contig00050, whole genome shotgun sequence Length of sequence - 764 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 639 456 ## COG5433 Transposase + Term 692 - 738 4.2 Predicted protein(s) >gi|281304505|gb|ADEF01000071.1| GENE 1 1 - 639 456 212 aa, chain + ## HITS:1 COG:ydcC KEGG:ns NR:ns ## COG: ydcC COG5433 # Protein_GI_number: 16129419 # Func_class: L Replication, recombination and repair # Function: Transposase # Organism: Escherichia coli K12 # 1 175 164 345 378 86 32.0 4e-17 ISGKIVTADAMSMQKDIIDKIREKSGDFIIELKSNQRSLRYGVEDKIKELSPVYSYCGEP ELGHGRIETRSYRVFDGTDLIANKEKWNGNLTIIEYECETVKKSTGNCTTEKRLYVTSLP ANTPRLGTLVRNHWSIESMHWGLDRNLLQDKIKRKSARAARNLDTIQRIVYSVFSIWRGR RKKKSDKRKGMAELMRHVSLSFTKLLHFLYQK Prediction of potential genes in microbial genomes Time: Sat May 28 07:54:37 2011 Seq name: gi|281304383|gb|ADEF01000072.1| Prevotella timonensis CRIS 5C-B1 contig00005, whole genome shotgun sequence Length of sequence - 142866 bp Number of predicted genes - 126, with homology - 118 Number of transcription units - 59, operones - 30 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 356 - 3244 1406 ## COG1061 DNA or RNA helicases of superfamily II - Prom 3315 - 3374 6.5 - Term 3324 - 3371 2.1 2 2 Tu 1 . - CDS 3390 - 4073 551 ## SCO6631 hypothetical protein - Prom 4110 - 4169 9.3 + Prom 4069 - 4128 5.2 3 3 Tu 1 . + CDS 4225 - 4341 95 ## - TRNA 5036 - 5113 76.5 # Arg TCT 0 0 - Term 5410 - 5453 -0.7 4 4 Op 1 . - CDS 5624 - 7867 1596 ## PRU_1631 hypothetical protein 5 4 Op 2 . - CDS 7898 - 8815 580 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components - Prom 8870 - 8929 5.8 + Prom 8795 - 8854 6.2 6 5 Op 1 . + CDS 8891 - 10279 991 ## COG1066 Predicted ATP-dependent serine protease 7 5 Op 2 . + CDS 10303 - 10800 424 ## COG0663 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily + Prom 10878 - 10937 4.0 8 6 Op 1 . + CDS 11103 - 12920 2011 ## COG0550 Topoisomerase IA 9 6 Op 2 . + CDS 12927 - 15080 1641 ## COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins + Term 15124 - 15152 -0.0 - Term 15448 - 15500 -0.4 10 7 Op 1 . - CDS 15670 - 16044 348 ## gi|282881634|ref|ZP_06290297.1| conserved hypothetical protein 11 7 Op 2 . - CDS 16022 - 16567 346 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 12 7 Op 3 . - CDS 16569 - 17219 549 ## BF3730 hypothetical protein - Prom 17311 - 17370 4.5 + Prom 17250 - 17309 7.3 13 8 Tu 1 . + CDS 17336 - 18799 1006 ## COG0144 tRNA and rRNA cytosine-C5-methylases + Prom 18814 - 18873 1.5 14 9 Op 1 16/0.000 + CDS 18901 - 19695 691 ## COG0207 Thymidylate synthase + Prom 19714 - 19773 2.2 15 9 Op 2 . + CDS 19815 - 20300 479 ## COG0262 Dihydrofolate reductase - Term 20281 - 20323 10.5 16 10 Op 1 . - CDS 20329 - 21924 1036 ## gi|282881640|ref|ZP_06290303.1| putative lipoprotein 17 10 Op 2 . - CDS 21947 - 22699 505 ## Cpin_5145 hypothetical protein 18 10 Op 3 . - CDS 22707 - 24236 1161 ## Cpin_5146 hypothetical protein 19 10 Op 4 . - CDS 24250 - 27579 2590 ## Cpin_5147 TonB-dependent receptor plug - Prom 27603 - 27662 1.9 20 10 Op 5 . - CDS 27668 - 27772 72 ## - Prom 27954 - 28013 4.4 - Term 28657 - 28692 1.0 21 11 Tu 1 . - CDS 28771 - 30798 2053 ## COG3590 Predicted metalloendopeptidase - Prom 30860 - 30919 4.5 22 12 Op 1 . + CDS 31165 - 32400 738 ## COG0582 Integrase 23 12 Op 2 . + CDS 32413 - 32775 179 ## BF0151 hypothetical protein + Term 32798 - 32845 9.3 - Term 32786 - 32833 9.3 24 13 Op 1 . - CDS 32850 - 33155 220 ## BF0150 hypothetical protein 25 13 Op 2 . - CDS 33187 - 33885 332 ## BF0149 hypothetical protein + Prom 33422 - 33481 3.7 26 14 Op 1 . + CDS 33704 - 34045 254 ## BF0147 hypothetical protein 27 14 Op 2 . + CDS 34049 - 34399 365 ## BF0146 hypothetical protein 28 14 Op 3 . + CDS 34420 - 35979 1591 ## BF0145 hypothetical protein 29 14 Op 4 . + CDS 36040 - 38130 1238 ## COG0550 Topoisomerase IA + Term 38208 - 38244 5.5 + Prom 38135 - 38194 1.6 30 15 Op 1 . + CDS 38295 - 38747 487 ## BF0143 hypothetical protein 31 15 Op 2 . + CDS 38737 - 44535 3494 ## COG4646 DNA methylase + Prom 44537 - 44596 2.3 32 15 Op 3 . + CDS 44622 - 44783 56 ## gi|281423761|ref|ZP_06254674.1| conserved hypothetical protein + Prom 44989 - 45048 10.4 33 16 Op 1 . + CDS 45192 - 47117 975 ## COG0480 Translation elongation factors (GTPases) 34 16 Op 2 13/0.000 + CDS 47117 - 49435 787 ## COG0642 Signal transduction histidine kinase 35 16 Op 3 . + CDS 49428 - 50750 570 ## COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains + Term 50975 - 51009 2.0 + Prom 50779 - 50838 2.6 36 17 Tu 1 . + CDS 51030 - 51443 76 ## BF0137 hypothetical protein + Term 51587 - 51624 1.0 + Prom 51589 - 51648 3.4 37 18 Tu 1 . + CDS 51691 - 52296 256 ## BF0136 tetracycline resistance element mobilization regulatory protein RteC + Prom 52319 - 52378 5.8 38 19 Tu 1 . + CDS 52479 - 53405 444 ## COG4823 Abortive infection bacteriophage resistance protein + Term 53466 - 53515 -0.6 - Term 53502 - 53538 3.9 39 20 Op 1 . - CDS 53554 - 55557 1333 ## COG3505 Type IV secretory pathway, VirD4 components 40 20 Op 2 . - CDS 55588 - 56835 791 ## BF0132 hypothetical protein 41 20 Op 3 . - CDS 56814 - 57317 333 ## BF0131 hypothetical protein + Prom 57948 - 58007 2.7 42 21 Op 1 . + CDS 58027 - 58788 460 ## BF0129 hypothetical protein 43 21 Op 2 . + CDS 58791 - 59231 317 ## BF0128 conjugate transposon protein 44 21 Op 3 . + CDS 59234 - 59587 138 ## BF0127 hypothetical protein 45 21 Op 4 . + CDS 59604 - 60332 612 ## BF0126 hypothetical protein - Term 60145 - 60174 0.5 46 22 Tu 1 . - CDS 60367 - 60828 76 ## gi|260885901|ref|ZP_05897250.1| conserved hypothetical protein 47 23 Op 1 . + CDS 60862 - 61194 225 ## BF0124 hypothetical protein 48 23 Op 2 . + CDS 61209 - 63695 1545 ## COG3451 Type IV secretory pathway, VirB4 components 49 23 Op 3 . + CDS 63734 - 64114 253 ## BF0122 hypothetical protein 50 23 Op 4 . + CDS 64138 - 64767 622 ## BF0121 hypothetical protein 51 23 Op 5 . + CDS 64771 - 65775 763 ## BF0120 hypothetical protein 52 23 Op 6 . + CDS 65809 - 66432 405 ## BF0119 hypothetical protein 53 23 Op 7 . + CDS 66460 - 66747 179 ## BF0118 hypothetical protein 54 23 Op 8 . + CDS 66728 - 68074 864 ## BF0117 hypothetical protein 55 23 Op 9 . + CDS 68111 - 68536 377 ## BF0116 hypothetical protein 56 23 Op 10 . + CDS 68555 - 68710 58 ## 57 24 Op 1 . + CDS 69077 - 70888 624 ## COG3344 Retron-type reverse transcriptase 58 24 Op 2 . + CDS 70872 - 71585 367 ## BF0116 hypothetical protein 59 25 Tu 1 . - CDS 71573 - 72172 290 ## gi|302483505|gb|EFL46507.1| hypothetical protein HMPREF9296_0827 60 26 Op 1 . + CDS 72171 - 73073 219 ## BF0114 hypothetical protein 61 26 Op 2 . + CDS 73070 - 73573 481 ## BF0113 hypothetical protein 62 27 Op 1 . + CDS 73725 - 73886 72 ## 63 27 Op 2 . + CDS 73861 - 74097 72 ## BF0112 lysozyme + Term 74106 - 74156 13.0 - Term 74094 - 74142 14.2 64 28 Op 1 . - CDS 74149 - 74370 171 ## BF1096 hypothetical protein - Term 74453 - 74482 1.9 65 28 Op 2 . - CDS 74488 - 74796 278 ## BF0110 hypothetical protein 66 28 Op 3 . - CDS 74851 - 75096 233 ## BF0109 hypothetical protein 67 28 Op 4 . - CDS 75093 - 75323 227 ## BT_2286 hypothetical protein 68 28 Op 5 . - CDS 75343 - 75600 224 ## BF0108 hypothetical protein 69 28 Op 6 . - CDS 75625 - 76956 838 ## BF0107 hypothetical protein 70 28 Op 7 . - CDS 76953 - 77369 289 ## BF0106 hypothetical protein 71 28 Op 8 . - CDS 77383 - 77604 179 ## BF0105 hypothetical protein 72 28 Op 9 . - CDS 77616 - 77831 187 ## gi|302483499|gb|EFL46501.1| conserved domain protein - Prom 77862 - 77921 4.1 73 29 Tu 1 . - CDS 78896 - 80857 2080 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 80973 - 81032 4.9 - Term 81046 - 81087 1.1 74 30 Tu 1 . - CDS 81106 - 82938 1298 ## COG0471 Di- and tricarboxylate transporters - Prom 83001 - 83060 7.9 - Term 83223 - 83254 1.1 75 31 Op 1 . - CDS 83439 - 84200 496 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I 76 31 Op 2 . - CDS 84197 - 85210 835 ## COG0812 UDP-N-acetylmuramate dehydrogenase 77 31 Op 3 . - CDS 85220 - 86101 567 ## PRU_0583 putative lipoprotein - Prom 86222 - 86281 5.4 + Prom 86202 - 86261 4.5 78 32 Tu 1 . + CDS 86294 - 87331 922 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit + Term 87359 - 87403 1.4 79 33 Tu 1 . - CDS 87673 - 88824 683 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 88866 - 88925 3.7 + Prom 89501 - 89560 8.2 80 34 Tu 1 . + CDS 89688 - 91160 1377 ## COG0471 Di- and tricarboxylate transporters + Term 91188 - 91241 17.4 + Prom 91191 - 91250 2.4 81 35 Op 1 10/0.000 + CDS 91283 - 92869 1544 ## COG0029 Aspartate oxidase 82 35 Op 2 9/0.000 + CDS 92958 - 93950 947 ## COG0379 Quinolinate synthase 83 35 Op 3 . + CDS 93983 - 94858 784 ## PROTEIN SUPPORTED gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 + Term 94933 - 94983 2.1 - Term 94842 - 94908 13.3 84 36 Op 1 22/0.000 - CDS 94990 - 96078 900 ## COG0842 ABC-type multidrug transport system, permease component 85 36 Op 2 45/0.000 - CDS 96075 - 97169 872 ## COG0842 ABC-type multidrug transport system, permease component 86 36 Op 3 10/0.000 - CDS 97188 - 98657 315 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 87 36 Op 4 . - CDS 98663 - 99556 709 ## COG0845 Membrane-fusion protein 88 36 Op 5 . - CDS 99558 - 100805 968 ## BT_0560 outer membrane efflux protein - Prom 100915 - 100974 9.9 + Prom 100868 - 100927 7.0 89 37 Tu 1 . + CDS 100963 - 101871 523 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 101724 - 101759 0.4 90 38 Op 1 . - CDS 101951 - 102469 186 ## PRU_0165 hypothetical protein 91 38 Op 2 . - CDS 102498 - 103178 669 ## COG0336 tRNA-(guanine-N1)-methyltransferase - Prom 103324 - 103383 7.7 + Prom 103230 - 103289 5.3 92 39 Tu 1 . + CDS 103352 - 104101 780 ## BF3580 hypothetical protein + Term 104161 - 104205 -0.8 93 40 Tu 1 . - CDS 104125 - 106092 1887 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) - Prom 106159 - 106218 1.9 + Prom 105979 - 106038 3.3 94 41 Tu 1 . + CDS 106249 - 106914 448 ## COG3382 Uncharacterized conserved protein + Term 106931 - 106964 0.6 - Term 106912 - 106959 10.2 95 42 Op 1 . - CDS 107102 - 109069 1710 ## COG0441 Threonyl-tRNA synthetase 96 42 Op 2 . - CDS 109162 - 111132 1800 ## COG0457 FOG: TPR repeat 97 42 Op 3 . - CDS 111138 - 111701 543 ## COG0242 N-formylmethionyl-tRNA deformylase 98 42 Op 4 . - CDS 111740 - 112153 317 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 99 42 Op 5 . - CDS 112234 - 112719 453 ## PRU_0589 sporulation-like repeat protein - Prom 112746 - 112805 7.5 + Prom 112684 - 112743 6.9 100 43 Op 1 . + CDS 112983 - 113201 385 ## gi|282877694|ref|ZP_06286509.1| conserved hypothetical protein 101 43 Op 2 . + CDS 113212 - 113562 391 ## PRU_0587 hypothetical protein 102 43 Op 3 . + CDS 113508 - 113834 176 ## gi|282881724|ref|ZP_06290387.1| conserved hypothetical protein + Term 113860 - 113896 1.0 103 44 Tu 1 . - CDS 113690 - 113974 131 ## - Prom 113999 - 114058 3.9 - Term 114148 - 114181 1.4 104 45 Tu 1 . - CDS 114304 - 114531 99 ## - Prom 114640 - 114699 3.7 - Term 114661 - 114700 1.4 105 46 Tu 1 . - CDS 114758 - 115171 546 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 115191 - 115250 5.1 + Prom 115167 - 115226 5.3 106 47 Tu 1 . + CDS 115317 - 116150 1012 ## PRU_0313 putative pantothenate kinase 107 48 Tu 1 . - CDS 116259 - 117104 847 ## COG4667 Predicted esterase of the alpha-beta hydrolase superfamily - Prom 117310 - 117369 6.6 + Prom 117105 - 117164 4.0 108 49 Op 1 . + CDS 117322 - 118731 1142 ## COG0006 Xaa-Pro aminopeptidase 109 49 Op 2 . + CDS 118755 - 119957 1130 ## PRU_0556 C1 family peptidase (EC:3.4.-.-) + Term 119987 - 120044 14.9 - Term 120082 - 120130 2.6 110 50 Op 1 . - CDS 120277 - 121938 1163 ## gi|282881730|ref|ZP_06290393.1| putative lipoprotein 111 50 Op 2 . - CDS 121982 - 122161 247 ## - Prom 122193 - 122252 7.1 + Prom 122822 - 122881 8.3 112 51 Op 1 . + CDS 122975 - 124711 1743 ## COG0608 Single-stranded DNA-specific exonuclease 113 51 Op 2 . + CDS 124716 - 126632 1440 ## COG0514 Superfamily II DNA helicase - Term 126666 - 126712 1.2 114 52 Op 1 . - CDS 126761 - 127513 595 ## COG1011 Predicted hydrolase (HAD superfamily) 115 52 Op 2 . - CDS 127510 - 128457 664 ## PRU_1800 hypothetical protein 116 52 Op 3 . - CDS 128433 - 129203 688 ## PRU_1801 hypothetical protein 117 52 Op 4 . - CDS 129228 - 129992 592 ## PRU_1802 nucleotidyl transferase family protein - Prom 130045 - 130104 1.8 - Term 130066 - 130120 10.2 118 53 Tu 1 . - CDS 130132 - 130833 457 ## PRU_1803 putative lipoprotein - Prom 130877 - 130936 5.8 - Term 130933 - 130979 3.5 119 54 Tu 1 . - CDS 130997 - 133405 1595 ## COG3525 N-acetyl-beta-hexosaminidase - Prom 133458 - 133517 3.5 120 55 Tu 1 . + CDS 133329 - 133613 61 ## - Term 133563 - 133610 14.0 121 56 Op 1 . - CDS 133668 - 134780 1240 ## Ctha_2118 hypothetical protein 122 56 Op 2 . - CDS 134791 - 136770 1739 ## COG4206 Outer membrane cobalamin receptor protein 123 57 Tu 1 . - CDS 137933 - 138721 519 ## COG3884 Acyl-ACP thioesterase - Prom 138778 - 138837 1.9 - Term 138813 - 138867 9.5 124 58 Tu 1 . - CDS 138885 - 140033 1303 ## BT_1391 hypothetical protein - Prom 140063 - 140122 6.8 125 59 Op 1 . - CDS 140327 - 141205 923 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase 126 59 Op 2 . - CDS 141238 - 142572 1526 ## COG0541 Signal recognition particle GTPase - Prom 142804 - 142863 4.3 Predicted protein(s) >gi|281304383|gb|ADEF01000072.1| GENE 1 356 - 3244 1406 962 aa, chain - ## HITS:1 COG:Z1129_2 KEGG:ns NR:ns ## COG: Z1129_2 COG1061 # Protein_GI_number: 15800650 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Escherichia coli O157:H7 EDL933 # 401 813 3 396 407 323 41.0 1e-87 MGRAENRSDELVLKQLQDLERENAMLKSILDKHGISYSLPVERETIEQPVHIATNHAVRL SLQEKVAVFQSLFQGRDDVFAKRWYSPSSQKAGYQPVCEREWNREYCDKRKYKCGDCPNR LFAHLSYNDFFNHLAGKDSFGRDVIGLYPICKDNTCYFLCTDFDDKNCEHGYKNDVLAFV NVCKNWNVPYYIERSRSGKGAHVWIFFDKPIMALMARKLGNAILTEAMNRDARLSFKSYD RFFPNQDTLPEGGLGNLVALPLQGMARRKGNSVFVDDEFNAYVDQWALLSQIQKLTEAEV DLLLRQHKMPNLGELSKSCETKPWETPQINTPIKDSYPKQIALTRANMLYIPLANLSAKC VNAFKRVAAFRNPEFYEKQNMRLSTYNIPRIISCSEMTDDYLALPRGCEDAVCDILSQHN VNVTISDKTNPGRSIHVTFKGELREEQQKAMEAFAEHNIGTLSATTAFGKTVFALGMIAK RKVNTLILVHNKALLEQWKERLDKFLEINETIEEPEKRRERKNKSSIIGCLCSGKNSLHG IIDIALIQSCLSEGEVKPFVRDYGMVVVDECHHVSSVSFEQVLRHVIATYVYGLTATPIR KDGRQPIIFMQCGKIRFTSDAKAQIANQTFKRILNPRFTSFHNITSENKSYVQITKALSE DVTRNEFIIEDVKIAIQKGHTPLLLTTRTAHVRILAEMLMPFVDHVVQLIGADSTKEKRL ALQKLQTISPTDSLAIVATGKYVGEGFDYPRLDALFLTMPIAWKGNVEQYAGRLHREYEG KSEVVIYDYVDIHIPLCDSMYRKRLKGYAAAGYGKNAIMKVADNQPQELIYERNNYENAF RNDLANAKHSVLIAVPKVKFKYRTAMMSTLSVILHNGVDVALRIKEEGAKEMELAKAGID VLYNKEQTLQCAIIDKAIVWYGNINFFDYNTETSNIMRIVDRKIANEMIDILLTKVPDLA QL >gi|281304383|gb|ADEF01000072.1| GENE 2 3390 - 4073 551 227 aa, chain - ## HITS:1 COG:no KEGG:SCO6631 NR:ns ## KEGG: SCO6631 # Name: SC4G2.05 # Def: hypothetical protein # Organism: S.coelicolor # Pathway: not_defined # 3 217 24 240 291 163 39.0 5e-39 MNLPGIKVDRVAFLVEALRPHCAETEIKKAALQRPIDVIPLKLINQLATECINEHTKKAT IFSTVTGVPGGIAVFFAIPADLLQYFCQTLIIAQKLAYLYGYPDLCDQNRHLTESSYDVL TIFLGVMLGSSTANEAFKQLSETFAEHTTMRMPQVGVTETMWYPLVKGVSKWVRTKFVKG SVTKRLSKAVPVIGGVVAGFLTYKTFKPNAKRLKKQMQANAMLFKSV >gi|281304383|gb|ADEF01000072.1| GENE 3 4225 - 4341 95 38 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MDIFSKFKAYSLKESSREVKNFIGVVKTSLVKLNPNKS >gi|281304383|gb|ADEF01000072.1| GENE 4 5624 - 7867 1596 747 aa, chain - ## HITS:1 COG:no KEGG:PRU_1631 NR:ns ## KEGG: PRU_1631 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 19 732 17 725 729 414 34.0 1e-113 MNYTDFDLEQIRNLITCEQNLPKAIENLQEYISKHELTTFQLKWEQLNGDYLLMKDFLRR GLKDPQFNVVYHNLLRELYALNSDIQLEKMIHENSSYQLAHQTAKSVVLGDTSIKTQMEK FVQDVAMLSLEPQKGQTLQTNQLYEEHQTYINQVFNAFLVSPQWTESVAKFVEELFLSPT VDSNDIQLLLSGLMLSAIQLFDYRKILVLIAIYQKSTDEEIRQRALMGLVLCLPDNDANI YPEVSKSITALCQNEQTLQELLELQIQFFYCMNADADNEKLQKDIIPQLMKGQNIQFTRT GIIEKEEDPLEEMLNPGAADRAMEAMEENFQKMMNMQRAGSDIYFGGFSQMKRFGFFMEL SNWFVPFYPQHPGLNQMNHELRDGQFMNVLLEHGPFCDSDKYSFALAASSILNQIPSQMR ELLNSQELLGPTVNKEEHHKPAYIRRMYLQNLYRFYRLYKDKNHFHNPFSTELSHHTVFF VLNNLFQNTALAHRRLEIGQFLYRHHFYDDLHRLLDACVNIDSVEYWRLSAMLAHQEKDY MRAGLAYDKLLAVDSDNEQALRGKANSLFYSGNFSEAIKYYSRILEKDANSARVQLNLAV AYINDNQVENGMKYLFKLSYEYPENLSVKRSLAWGYLRKNENEQALQLYNQLMAHKNHIP SDYLNAGYCLWFDSKIEEAVEKFAHYEMMRNEKGIAQGNDESLHDVFNLDAPLLSQYHVG KEEATVMEDLVNDQCRSYAGRKGEQLS >gi|281304383|gb|ADEF01000072.1| GENE 5 7898 - 8815 580 305 aa, chain - ## HITS:1 COG:AF0088 KEGG:ns NR:ns ## COG: AF0088 COG0715 # Protein_GI_number: 11497708 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Archaeoglobus fulgidus # 38 254 19 236 300 78 26.0 2e-14 MKKILYINILFILLLSACGQKSQEIEKKTKANNAREQKAYAEALRIAVLPTLDCIPLYVA KDRHLFDSAQVDVRLLPFTAQMDCDTAIIGGSVQGVVSDLVRTERLKRKGLKLEYPITTP LQWQLISNKTARLKQLNQLGDKMVAMTRYSGTDYLTDQALSGVKTSAKVFKVQINDVLVR LHMLLNNEMDAMWLPEPQATTARLYKHRVITSSEKTKEQLGVIAFRTDMLQTKSRKEQLQ AFINAYNNAVDSLNTYGLSHYSGLVTKYCHTDEKTVKAIPNVTFKHATAPLEKDVQKAKA FIPKL >gi|281304383|gb|ADEF01000072.1| GENE 6 8891 - 10279 991 462 aa, chain + ## HITS:1 COG:BS_sms KEGG:ns NR:ns ## COG: BS_sms COG1066 # Protein_GI_number: 16077155 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Bacillus subtilis # 1 462 1 457 458 457 49.0 1e-128 MAKDKIAYVCSQCGQESSKWIGKCPNCGEWNTFKEIRISNSSQPSSIAVSTAHNLHGEQK KNKPLHLQDISAQDEPRINMNDDELNRVLGGGLVPGSIVLLGGEPGIGKSTLTLQTILHL PNKKVLYVSGEESAHQLKMRADRITTEQNNNVEILCETSLEHIFNQVLEVKPDLLIIDSI QTIATNHVDSSPGSIAQVRECAALLLRLAKTSGIPILLIGHINKEGTLAGPKILEHMVDT VIQFEGDQHYMYRILRSIKNRFGSTSELGIYEMQQNGLRPVSNPSELLLTQDHDGLSGIA ISSAIEGVRPFLVETQALVSSAAYGTPQRSATGFDQRRLNMLLAVLEKRVGFKLMQKDVF LNIAGGLRVTDLAMDLSVIAAVLSSNVDTAIENGWCMAGEVGLSGEVRPINRIEQRIAEA EKLGFKHMILPKYNLKGINPQKYHLELHPVRKVEEALRALFG >gi|281304383|gb|ADEF01000072.1| GENE 7 10303 - 10800 424 165 aa, chain + ## HITS:1 COG:BH3289 KEGG:ns NR:ns ## COG: BH3289 COG0663 # Protein_GI_number: 15615851 # Func_class: R General function prediction only # Function: Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily # Organism: Bacillus halodurans # 8 164 6 165 174 149 43.0 2e-36 MATIIKVRNKRPNWGKNCFIAENATLVGNIIMGDDCSIWFSAVLRADVDAIHIGNRVNIQ DGACVHQSHGTPVWIEDDVSVGHLANVHGCIIRHGALIGMGATVLDGAEIGAGAIIAANA LVTQGTHVGAHEIWAGIPARCIKKTMPGQAEEYAKHYMEAKQWYL >gi|281304383|gb|ADEF01000072.1| GENE 8 11103 - 12920 2011 605 aa, chain + ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 2 600 4 598 709 443 44.0 1e-124 MIVCIAEKPSVAKDIARIIGAHSSKNGYMEGNGYQVTWTFGHLCCLKEPNDYCDNWKHWS LAALPMLPPRFGIKLIDDEGIKRQFAIIEQLMQHADSIINCGDAGQEGELIQRWVMQKAQ AKCPVKRLWISSMTDEAIREGFNKLKEQSAYEPLYLAGLSRAIGDWILGMNATRLYTLKY GKNRQVLSIGRVQTPTLALIVNRQKEIDNFKPETYWVLATIYRDTTFTATKGRFDKKEEG EAAFKTIEGEPFTVTDVQKKKGTEAPPKLYDLTSLQVDCNKKFGYSAEMTLNLIQSLYEK KYTTYPRVDTQYLSDDIYPKCPQTMNGLYQTKIQSKTVYAELIKPLGGKALKKSKKVFDS SKVTDHHAIIPTGVPPIGLSNMEENVFDLIARRFIAVFYDDCKFATTTVLGKVKEIEFKV SGKEILEPGWRDVYAKNQNEDDDADEKTTDEERTLPTFVKGESGEHIPTLTEKQTTPPKH YTEATLLRAMETAGKFVNDEELRAALKENGIGRPSSRASIIETLFKRKYIQRNRKRIVAT PLGIQLIDIIKEKLLTSCELTGIWEKKLRDIEHQKYDAAQFVNELKIQINQIVNDVLRDN SRQLG >gi|281304383|gb|ADEF01000072.1| GENE 9 12927 - 15080 1641 717 aa, chain + ## HITS:1 COG:RP771 KEGG:ns NR:ns ## COG: RP771 COG2885 # Protein_GI_number: 15604604 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Outer membrane protein and related peptidoglycan-associated (lipo)proteins # Organism: Rickettsia prowazekii # 549 634 51 136 155 73 37.0 1e-12 MKKQALHHFLFIYQTVLIGLLLVSCGAERSMKKGEQFLTIGEYYDAAAQFKKAYRQTPPK ERALRGQRASRMALCYDCLNATPQAIAAYRNVIRYQQDDVQTHFALAQQLLRNGNYKEAE KEFALVLDSIPNHVLAQEGLRSAQQAPAWKESGSRYTVKKMNVFNSRHADYSPMLWGDDY NQLYFTSTRKEATGNNLSGITGCKPADIFVSVKDDKGNWGKPEVVQGGLNTDAEEGACAF SPDGREMYLTQCTTDATHPRYAKIVVSNRQDAAWGKANELPITQDTLSSYAHPAVSPDGQ WLYFTSDMPGGMGGMDIWRVRLTAAGLGGVENLGAPINTPGNEMFPTFRPNGDLYFSSDG HPGFGGLDVFIAIPNHQCSANNALKDSLQCYAPTKDKDATAPYRLVHPGYPLNSEGDDFG LTFEGPHNRGFFSSNRNNGRGWDQIYWFENPEIIQSIKGWVYEKDGYELPSAQVRIVGSD GTNEVLSVNSDGSFSYVIQPKVDYLLLATCKGFLNHTEELQVEPVKESKEYTLQFPLASI TVPVLIDNIFYDFDKATLRLESKKALDDLVKLLNENSHVTIELSAHCDYKGSKEYNQRLA QRRAEAVVRYLIDKGIAKDRLKPVGYGKEKPKTIRKKLTERYPWLKEGDVLSEEFIKTLD AEKQEICNQLNRRTEFSVLRTTYNMFDEQGKLKKQSKNKQQNPSLPKNEDTPIIFVE >gi|281304383|gb|ADEF01000072.1| GENE 10 15670 - 16044 348 124 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881634|ref|ZP_06290297.1| ## NR: gi|282881634|ref|ZP_06290297.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 3 124 1 122 122 239 100.0 4e-62 MDMTEKDDDLLKTFFEEYAINIPDNGFSQQVMRQLPRRFLKANQIWFWFCTLVGIAFLAL SDAVEQLRTVVNNFIGDIHGFWASFDLDSTSPLTVYMLALVLALISGFYIFNRDIGYRNQ GDSL >gi|281304383|gb|ADEF01000072.1| GENE 11 16022 - 16567 346 181 aa, chain - ## HITS:1 COG:RSc1055 KEGG:ns NR:ns ## COG: RSc1055 COG1595 # Protein_GI_number: 17545774 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Ralstonia solanacearum # 18 173 18 188 199 95 36.0 3e-20 MKQVDDLSLVQQVTVFHDKHSFDKLVVKYQSPIRRFLLVQTRGDEALSDDLAQDTFIKAY THLAQFKGQSQFSTWLFRIAYNVFYDYMRRRKQTEDIDTPSVCGKHAEANHGYLKMDLAE ALDILNDQERLCVTLQLMEGESIDKIAEILGLASGTVKSHLFRGKQKLANYLRNNGYDGK R >gi|281304383|gb|ADEF01000072.1| GENE 12 16569 - 17219 549 216 aa, chain - ## HITS:1 COG:no KEGG:BF3730 NR:ns ## KEGG: BF3730 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 35 211 19 188 208 68 32.0 2e-10 MKQYLLMLSMLLTLSISGMQAQGKHRSHQQTATTIAVKDTAKQGVEAYSDTTTVMDTDTI NVVDDNAAYANSDDDENWENDPFTFWNKNIGWHIGGIFFAIFVITIVFLFLALPFIVIIV LLRYLIKRHNDRVDIAQQAIASGQPIPEDVKPTAARNSDYLWKGGITHIATGTGLVIMFS IWGSNTLIGIGCLLICFGIGQLVIAKTSRKDNDKVE >gi|281304383|gb|ADEF01000072.1| GENE 13 17336 - 18799 1006 487 aa, chain + ## HITS:1 COG:SP1402_1 KEGG:ns NR:ns ## COG: SP1402_1 COG0144 # Protein_GI_number: 15901256 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Streptococcus pneumoniae TIGR4 # 1 255 1 247 280 154 37.0 3e-37 MVLPEAFENYTRAMMGDDLFAHFAHSMQQDATAFVRLNHYKCPTAKMALAASKVPWYEYG YALDARPAFTFDPLFHAGLYYVQEQSSMFLAQVLRQFVQSPVRMLDMCAAPGGKSTLARL ELPKGSTLVCNEPNRSRVQILNENIQKCGHPEVMVTNNYPKEIRQSGLKFQVILCDVPCS GEGMFRKNANAIDEWSVDNVNKCQQLQREIVAEAWQCLEPGGLLIYSTCTFNTKENEENV AWICQELGATTLKVKVEEDWNIMGNLLSAPATEDTTNKESKHSSAFNVYRFIPGYQDKPG NIYGEGLFMAVLRKEGTVQSMTEKTSKQKMRHQLSDNGQSIPTHWLQESQHFNFTWVKNE LWAIPPSLQSQYEQAARSLRVIAAGINLLQLKGKSFIPSQGLALSSCLSPSAFPRVELSY ADAIQYLGRNTITLPPNTPQGFILVTYQNVALGFVKNMGNRANNLYPSEWRIRSTHSPEN ITQIITV >gi|281304383|gb|ADEF01000072.1| GENE 14 18901 - 19695 691 264 aa, chain + ## HITS:1 COG:NMB1709 KEGG:ns NR:ns ## COG: NMB1709 COG0207 # Protein_GI_number: 15677556 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Neisseria meningitidis MC58 # 1 264 1 264 264 413 70.0 1e-115 MQPYLNLLQRILDEGIEKTDRTGTGTKSIFGHQMRFNMEDGFPLLTTKKLHLKSIIYELL WFLKGDTNIKYLKEHGVRIWDEWADEDGNLGPVYGHQWRSWPDYNGGTIDQIQNVINLIK HHPDSRRMMVTAWNPAEIEQMALPPCHCLFQFYVADGRLSLQLYQRSADTFLGVPFNIAS YALLLQMMAQVTGLQVGEFIHTTGDTHLYLNHIEQAKLQLTRTPRTLPQMKLNPDVKSLF DFQYEDFELQNYNPWPHIKADVAV >gi|281304383|gb|ADEF01000072.1| GENE 15 19815 - 20300 479 161 aa, chain + ## HITS:1 COG:BS_dfrA KEGG:ns NR:ns ## COG: BS_dfrA COG0262 # Protein_GI_number: 16079240 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Bacillus subtilis # 3 159 2 159 168 132 44.0 2e-31 MTITLIAAVARNRAIGYENKLLYWLPNDLKRFKALTTGHTVIMGRHTFESLPKGALPHRR NIVLSRSQSHFEGCETFSSIEEALHHCQEDEDIYVIGGAHVYQQTIQYADRLCLTEVDDV PTHADVFFPSYDSWKEVSREEHQIDEKHAFAYAFVNYEKMR >gi|281304383|gb|ADEF01000072.1| GENE 16 20329 - 21924 1036 531 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881640|ref|ZP_06290303.1| ## NR: gi|282881640|ref|ZP_06290303.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 531 1 531 531 1051 100.0 0 MNKNILLAIAVLSLLSLLIACTDDNSTYATSDNYIKISGIEKAYNAISFSGDKLNIQPKV ESSFDLSDMTYLWTYYNTQDANRQKTDKRGRGYYVQPDTICKVKDLSFPVKLSDGEYTLV FTAKSKSTGFFQQNVTSLLTKSSLSHGFYICKENEEGNTDVDLFLHTSNKLIPDVIKNTQ GKALPGKPRAFNINHQLGYTDPKTEKEAAANFLCITTEKDSAYWIRALDCKTIKTLSNFN YEQVPNLKPYRIVRGFFTEFLLTNQGIFHGYTASQHGNGILGEQEGYGASTHVVQSVGDH AFILIYWALPEHSLYMMDYNGGLTEVVGKKTYVNGKPVMFQTQKLNNLECLYSGLNFTDK TAVKAYFLFHDKKENKKVLYEISPDVDKATVDTVKIVDPNSHFAQASRYAICAKSATIAY AVHQNKVYSYSLGKDAKEKELTFKGLPENEEITFLSNRYFLGDKKSNFDYLIVGTQTGNT YKLYFYNIVGGEPDGVPKYTTSGKGILKSLGYIDPTVQDLDDGAVAPLLDE >gi|281304383|gb|ADEF01000072.1| GENE 17 21947 - 22699 505 250 aa, chain - ## HITS:1 COG:no KEGG:Cpin_5145 NR:ns ## KEGG: Cpin_5145 # Name: not_defined # Def: hypothetical protein # Organism: C.pinensis # Pathway: not_defined # 1 248 1 272 273 79 25.0 9e-14 MKKSILFLFAVTAIVFSSCEEKLPLYSDPQAYLNFDIRYREDTLINYSFAFADKGVNKDT VWITLNTMGYLSDKPRMFKLKQVPFGKLNAEPGKHYLGFDTKEMEKYLVIPAKAVSVDVP IVLFKHPSLDKGIYNLRIQVQPNGTFMPGYQEQNFVQIAVTNKLSRPSEWNGFMEHYFGK WGEVKHKFMMRITGYKWDDKFIRPLYKDQAYARFLQSKLKRALDKLNEERKAKGESFLKE ENGSLITFDE >gi|281304383|gb|ADEF01000072.1| GENE 18 22707 - 24236 1161 509 aa, chain - ## HITS:1 COG:no KEGG:Cpin_5146 NR:ns ## KEGG: Cpin_5146 # Name: not_defined # Def: hypothetical protein # Organism: C.pinensis # Pathway: not_defined # 1 502 1 496 500 213 31.0 1e-53 MKKFFSIIFICVLAVGSLSSCNDWLDVQPQSQQREKDMFKSYEGFKSALVGCYSSMASAT LYGERLTISDIEYLACLWNEPGKNTGVLWQHLYKHDYKNQPVEDDVKRIYGGLYNVIAQA NMVIKHAETEGSVIADAKSRNVIMGEAYAIRAFCHFDVLRLFGQLPQNPKKKVMLPYSQG TGINYTAPYLDYEQFVAQLEKDLEQAEKLLAGSDPIQEYNYDALNKMGDNPVTLDDEYMQ FRQFRINYFAVHAIKARLYLYIGKLDKAYKEARYIIDAKVAGEPFMKLSGVKDISNRLYT LPNECIFALSNNRLDKYVPDLLQGYNGRVDGETNLVITNEMLNKVLYDGANTTSDNRYIS IWNRMSADVTGHKYPSLLKYSYNINEYQRPAMLSKLMTKLQLMPLIRLSEMYLIAMETTK DLSETNALYKTYMASHNVNVSKNFTSLDEVKAEVMKDYHREFYAEGVMFYTYKRTFTKRL LFTSKPMTEDNYILPLPITEANTNTKPVK >gi|281304383|gb|ADEF01000072.1| GENE 19 24250 - 27579 2590 1109 aa, chain - ## HITS:1 COG:no KEGG:Cpin_5147 NR:ns ## KEGG: Cpin_5147 # Name: not_defined # Def: TonB-dependent receptor plug # Organism: C.pinensis # Pathway: not_defined # 6 1109 47 1164 1164 782 39.0 0 MKKTFLFFSILASFLLMSIPLSAQSQAKLTMSFNDEALISIFQRLESHSDYKFVYDNEEV SKYKVTLDVTNATVPSIVDQALRNTNLKYTVAGKLIKVMTRSASTNGLQNPEGQKKQTIK GYVYEKDTNEPVIGAHIKVLGTDVKGVTDVDGAFHLDVDVKPQTKVEVSYLGMKTVQLPV SKEMKIFLVSDVKELKGVVVTGIFRKAKESYTGAVSTIDRKQLDMYRGSNLLQTLKNIDA SVNFPTNNLAGSNPNVLPNINIRGTASLPMSVEEFNKNASQTVNTPLIIMDGFEISLTKL MDYNDEQIESINILKDAAATAIYGSRGANGVIVVITKQPKEGKLRVTAKAGLSLEIPDLT SYHLLNAAQKLDLEVKAGLYSRERQKLQLEYNEVYNKRLKNVVDGIDTDWIHKPVRTGVG QRYNVQLDGGAQAFRWAASLGYNGIEGAMKTSNRRTITGDITLLYSIKNLIFRNYTSFAS NKSNESKYGSFSKYVDAIPYFSPYDKNGRLVPNFPNLFLDEKPLPNPLYDASLNTINSSA YQTFLNNFSIEWLITDALRVRAKLGVSTERNNADRFLPAEHSYFNSSEYNTPAGLMRKGN YRFSTGMDDMVSGNITMSYAKTFAEKHQVYVGLDYSISSRTYTDYNFEAEGFSNSDLNFM ANAKQYKYQGAPYGDRNIVRMVGATGNVNYTYDNRYYGDFSFRVDGNSKFGSEKRFAPFY SLGAGWNIHNEKFMKAHKAFSNLRLKASYGISGSQDFSVESVNTTYRYYSDKRYLLWSAA ELMGYGNPSLTWQNTREINVGTEIGLFENRIMAEINYYDKNTTNLLSSMDMPLNSGFTHY IANIGEMNNKGIEASLNTYIIRDYDRKLNWMIGGQIVYNKNKIIKLSDAIKTQNERYLAQ GAEISNLFYEGKPLNSIYAVRSAGIDPSTGKEVFYDKDGKLSKRWNPRDKVYMGSSEPLW RGNFRTTLMYKNFTLNVSFGYHWGGKLYNSTLLNRVEISRYDIADKNVDERVLSQRWLQP GDVSFFKAISNEGTRATSRYVFNDRMLELQNVSLQYRWNTAWLHDKTGIESLLFGINASN LAYWSSVKFERGTGYPFAHNVQGSITLTF >gi|281304383|gb|ADEF01000072.1| GENE 20 27668 - 27772 72 34 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSITSKIKVNYVLLQKEIKDNFQEAILPRNTHSA >gi|281304383|gb|ADEF01000072.1| GENE 21 28771 - 30798 2053 675 aa, chain - ## HITS:1 COG:MA2001 KEGG:ns NR:ns ## COG: MA2001 COG3590 # Protein_GI_number: 20090849 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted metalloendopeptidase # Organism: Methanosarcina acetivorans str.C2A # 16 675 1 665 665 468 37.0 1e-131 MKQLFPMMLLMVAPAMGMAQSKTGLVEANFDKSVRPADDFYQFATGGWQKNHPLPAAYSR FGSFDQLAEDNNKRINSILSELKKKTYKKGTMEQKLSDFYKLAMDAERRNKEGITPVKPL LNEIEAAKTKDQLLQLQLKYANMGYGIPYGSYFAADEKNVAMNILNISQGGLTLGQKDYY VNNDSATVAIRNAFKHHIARMFQLYGFTPAQASAKADIVFKNETALALISKSMTELRDPQ ANYNKMTLKQFNANYPNINLEAFATAEGVKSDYIQEMVVGQPAFLEGYDKLSAAATADDL RAIMEWDVIMSSAAYLTDQIREANFDFFGKTMSGRKEDYPLWKRATNQVEGQMGEALGKM YVQRYFPESSKKMMEKLVRNLQIALGERIDAQTWMSDTTKAEAHKKLDKFYVKIGYPNKW RDYSSLSIDPSKSFYENVMACREFAHRNHIAERAGKPVDRDEWFMTPQTVNAYYNPTTNE ICFPAGILQYPFFDAKADEAFNYGAIGVVIGHEMTHGFDDQGRQYDASGNMNDWWTAGDA KRFNERADMYADFFSNINVLPDLKSNGRFTLGENLADHGGLMVSYLAFQNATAKKPLKTK DGFTANQRFFLAYAGVWGQNITEKEIRNRVKSDPHALGKWRVNGALPHIDAWYEAFDVKP TDKLYLPKSQRLELW >gi|281304383|gb|ADEF01000072.1| GENE 22 31165 - 32400 738 411 aa, chain + ## HITS:1 COG:lin2601 KEGG:ns NR:ns ## COG: lin2601 COG0582 # Protein_GI_number: 16801663 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Listeria innocua # 112 403 9 313 314 60 25.0 6e-09 MKSTFSVIYYLKRQVVKKDGTVPVMGRITVDGSQTQFSCKLTVDPKLWDTKGGRVTGRST AALETNRMLDKMRVRINRHYQEIMERDNFVTAEKVKNAFLGLEHRHHTLMQVFRQHNEDY EKQVEAGMKAKGTLLKYRTVYKHLQEFLDIRYHVKDIALKELTPAFISDFEMFLRTDKHC CTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTRSFLTKEEIRLLMDGKLKN AKQELYRDLYLFCAFTGLSFSDMRSLTEENIRTYFDEHEWININRQKTGVVSNIRLLDIA NRIIGKYRGLCEDGRIFPVPHYNTCLAGIRAVAKRCGITKHITWHQSRHTAATTVFLSNG VPIETVSSMLGHKSIKTTQIYAKITKEKLNQDMENLVARLSGIEEFAGCTI >gi|281304383|gb|ADEF01000072.1| GENE 23 32413 - 32775 179 120 aa, chain + ## HITS:1 COG:no KEGG:BF0151 NR:ns ## KEGG: BF0151 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 120 1 120 120 225 91.0 5e-58 MKRDIIIIDNKAVSVTGNDVWMAATEIAGLFHTTVPAVNAAIKAVRKSDVLNDYKVCRYM QLENGLYADVYALEIIIPVAFRLNTYNTHLFRTWLVGKALSQEKRQAYVMFIQNGKTGYC >gi|281304383|gb|ADEF01000072.1| GENE 24 32850 - 33155 220 101 aa, chain - ## HITS:1 COG:no KEGG:BF0150 NR:ns ## KEGG: BF0150 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 101 1 101 101 181 95.0 5e-45 MINENNDVFTMEDEPIASVMQDMRKGSKWLSAFLENYRPPLDGERYLTDGEVAELLRVSR RTLQEYRNNRVLPFILLGGKVLYPETGLREVLEANYRKPLE >gi|281304383|gb|ADEF01000072.1| GENE 25 33187 - 33885 332 232 aa, chain - ## HITS:1 COG:no KEGG:BF0149 NR:ns ## KEGG: BF0149 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 129 232 10 113 113 199 96.0 6e-50 MRCSLRIRWRVRVLTLSRCAASRVVSNLSGDAALLSPETARTCAAISAICSVNDRKTELS IVITFIFSPFFLYLRQNSAINKRGFNNSLRDSRKIFTEDGSVTRSNGATGSLSVENGTCP GVYRYLCGQTDNCMNMEIVSIEKKTFEMMVATFGALSEKVAALRRKSDTGRMERWLTGEE VCGQLRISPRTLQTLRDRRLIGYSQINRRFYYKPEEVKRLIPLIGTLYPHGR >gi|281304383|gb|ADEF01000072.1| GENE 26 33704 - 34045 254 113 aa, chain + ## HITS:1 COG:no KEGG:BF0147 NR:ns ## KEGG: BF0147 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 113 27 141 141 103 53.0 2e-21 MESSVFRSLTEQIAEIAAHVRAVSGDKRAASPDRLLTTREAAHLLNVSTRTLQRMRSEQR IGYVVLRGKCRYRQSEIDRLLDESTVNEDAATPQELKRNHTLRTGGNPKGRRT >gi|281304383|gb|ADEF01000072.1| GENE 27 34049 - 34399 365 116 aa, chain + ## HITS:1 COG:no KEGG:BF0146 NR:ns ## KEGG: BF0146 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 116 1 116 116 213 100.0 1e-54 MELLTRNNFEGWMQKLMERLDRQDELLLAMKAEGKQPTITESIRLFDNQDLCMLLQISKR TLQRYRSVGALPYKTLGKKTYYSEEDVLTFLSNHIKDFKKEDIAFYKARIHNFFHK >gi|281304383|gb|ADEF01000072.1| GENE 28 34420 - 35979 1591 519 aa, chain + ## HITS:1 COG:no KEGG:BF0145 NR:ns ## KEGG: BF0145 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 519 1 523 523 799 93.0 0 MAKKKDEKDVLVVRDEKTGEISVVAGLNADGTPKRTPAKAENAQSFLQFDRHGDVLDNFF KNFFRQCKEPSRFGFYRIAADQAENLLEVMKQLLKDPEANKELLAPHKVDTSDYEKKVQE ELATEKQEPQKQENMEQQKEQQEDPEQTQGKRGYQPIDESKINWQELEDRWGVKRDDLEK SGDLTKMLHYGKSDLVKVKPTFGGEAFELDARLSFKKDGEGNISLVPHFIRKEQKLDEYK EHKFSDDDRKNLRETGNLGRVVDIVEKETGEIIPSYISIDRKTNEITDIPASKVRIPERI GKTEITKQEQDMLRAGLPVRDKLIERNDGRKFVTTLQVNVEQRGVEFVPGTGRSPRTVQT QETKGDTSKSQAQGGENATQTKKEQRRNTWTNEDGSIRPISKWSDVNFTEQQKADYVAGK AVKLENVTDKQGFHATMYIKFNPEKGRPYRYETNPDIGQQVAPSNESRTQVAVNNEGKTN EATKNLKEPLQKGQTTPKDARQQQQQGKPQKKTGKGMKV >gi|281304383|gb|ADEF01000072.1| GENE 29 36040 - 38130 1238 696 aa, chain + ## HITS:1 COG:CAC3567 KEGG:ns NR:ns ## COG: CAC3567 COG0550 # Protein_GI_number: 15896801 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Clostridium acetobutylicum # 4 626 6 647 709 398 38.0 1e-110 MKTIIAEKPSVAREIARIVGATKREEGYFEGGGYAVTWAFGHLVQLAMPDGYGVRGFVRD NLPIIPDTFTLVPRQVRTEKGYKPDSGVVSQIKTIKRLFGTSDQIIVATDAGREGELIFR YLYHYTGSTTPFVRLWISSLTDKAIREGLRNLEDGGKYDNLYLAAKARSESDWLVGINGT QALSIAAGHGTYSVGRVQTPTLAMVCERYWENRRFTPEAFWQLHIATDGCDGKVVKFSSS EKWKSKEPATELYNKVKAAGFATVTKAERKEKTEDTPLLYDLTTLQKEANAKHGFTAEQT LEIAQKLYEKKLITYPRTGSRYIPEDVFAEIPKLLAFIGTQHEWKDKVRAKAIPTRRSVD GGKVTDHHALLVTGEKPLFLSKEDNTIYQMIAGRMVEAFSEKCVKDVTAVMAECAGVEFT VKGSVIRQAGWRAVYGEENKEETTIPGWQEGDTLTLKASSITEGKTKPKPLHTEATLLSA METAGKEIEDDALRQAMKDCGIGTPATRASIIETLFKRGYMERCKKLLVPTEKGLALNSV VKTMRIADVAMTGEWEKELARIERGELSADTFRKKIEAYTREITSELLSCDKLFGSRDSG CACPKCGTGRMRFYGKVVRCDNTECGLPVFRLKAGRTLSDDEIKDLLTEGHTQLLKGFKS KQGKSFDAVVAFDGEYNTTFVFPEAKKGKKFSGRKK >gi|281304383|gb|ADEF01000072.1| GENE 30 38295 - 38747 487 150 aa, chain + ## HITS:1 COG:no KEGG:BF0143 NR:ns ## KEGG: BF0143 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 150 46 195 195 234 89.0 6e-61 MNNKKNNEGQSDFSYYGLYLMDYLRTNKFEQATDTAFIRERADRAAETYEKARIEGYPTD GAQELAMETLLRGLHYSRYAMLHEVVENEFANEVPEEKQEAFIHKLLPLVGNVFSVYDLS DDNFALSSDYDLLYTELTGATVLYIGEYGV >gi|281304383|gb|ADEF01000072.1| GENE 31 38737 - 44535 3494 1932 aa, chain + ## HITS:1 COG:AGpT188_2 KEGG:ns NR:ns ## COG: AGpT188_2 COG4646 # Protein_GI_number: 16119916 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA methylase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 760 1678 237 1140 1315 352 29.0 3e-96 MAFNRKQKLRDNIEAIRTAFILDREQRAATTEERAILQRYCGFGGLKCILNPAKELTDAV RWAKSDLELFAPTVELHRLIRENSKDETEYKRFVDSLKASVLTAFYTPKEITDTLADMLA DYSVRPARMLEPSAGVGVFVDSVLRHSPDADVMAFEKDLLTGTILRHLYPDHKMRTCGFE KIEKPFNNYFDLAVSNIPFGDIAVFDAEFQRSDSFGRRSAQNAIHNYFFLKGLDTVRDGG IVAFITSQGVLNSTKTSVRNELFRQANLVSAVRLPNNLFTDNAGTEVGSDLIVLQKHLNK KEMSQDERLMTVIQTDTKTDLTDNAYFIHHPERIVHTTAKLDTDPYGKPAMVYLHEGKTA GISGDLRRMLDEDFHYRLAMRLYSGTIRQSGTEEKVTVQKEVERPAIKLETVSSAQTVET PTEKPQPVEEKPEIEPRPKYSDGVQLSLLDLWGMTEEVSQQPKTAKKKKAAKKESPTRRI PSKPQTTQNVTENKEAKTDNAAKPADPDDIYATLDWDTNPPINGFYEMMMGLTPERRKEL RELARQHNEKQVAAEKTEVKAVPETSREQPRQEETQPKVAATPAATDAQVEAVATSLFPD IEAEKPKEEVVDLSPRAYHRTPEMHLREGSLVADRARRNIGYLKDITPYGATFQPLDLKG YQKEKALQYVLLRDAYERLYRYESNLHEANVQWREHLNTCYDEFVMRYGNLNAKQNVKLV MMDAGGRDILSLERAENGKFVKADIFDRPVSFSVESHANVGSPEEALSASLNKYGTVNLD YMREITDSTAEELLTALQERIYYNPLVTGYEIKDRFIAGNVIEKAERIEAWMGENPESER MPEVKQALEALKEAEPPRIAFEDLDFNFGERWIPTGVYAAYMSRLFDTEVKIAYSASMDE FSVACGYRTMKITDEFLVKGYYRNYDGMHLLKHALHNTCPDMMKSIGKDEHGNDIKVRDS EGIQLANAKIDEIRNGFSEWLEEQSPQFKERLTTMYNRKFNCFVRPKYDGSHQTFPDLNL KGLASRGIRSVYPSQMDCVWMLKQNGGGICDHEVGTGKTLIMCIAAHEMKRLNLAHKPMI IGLKANVAEIAATYQAAYPNARILYASEKDFSTANRVRFFNNIKNNDYDCVIMSHDQFGK IPQSPELQQRILQAELDTVEENLEVLRQQGKNVSRAMLKGLEKRKHNLEAKLEKVEHAIK SRTDDVVDFKQMGIDHIFIDESHQFKNLTFNTRHDRVAGLGNSEGSQKALNMLFAIRTIQ ERTGKDLGATFLSGTTISNSLTELYLLFKYLRPKELERQDIRCFDAWAAIFAKKTTDFEF NVTNNVVQKERFRYFIKVPELAAFYNEITDYRTAEDVGVDRPAKNEILHHIPPTPEQEDF IQKLMQFAKTGDATLLGRLPLSETEEKAKMLIATDYARKMALDMRMIDPNYEDHPDNKAS HCAKMIAEYYQKYDAQKGTQFVFSDLGTYQPGDGWNVYSEIKRKLTEDYGIPPSEVRFIQ ECKTDKARKAVIDAMNAGTVRVLFGSTSMLGTGVNAQKRCVAIHHLDTPWRPSDLQQRDG RGVRAGNEIAKHFAGNNVDVIIYAVEKSLDSYKFNLLHCKQTFISQLKSGAMGARTIDEG AMDEKSGMNFSEYMALLSGNTDLLDKAKLEKRIASLEGERKSFNKGKRDSEFKLESKTGE LRNNTAFIDAMTEDWNRFLSVVQTDKEGNRLNIIKVDGVDSADEKVIGKRLQEIAKNATT GGLYTQVGELYGFPIKVVSERILKEGLEFTDNRFVIEGNYKYTYNNGHLALADPLAAARN FLNAIERIPSIIDQYKAKNEVLKREIPQLQEIAGKVWKKEDELKQLKSELAALDRKIQLE LAPPTPEVAEKENEGQQVKPEAEDVRNRQVQYPENAPPQIRSPADSIVANHVIIGRPGLY AKEETRSKGLKI >gi|281304383|gb|ADEF01000072.1| GENE 32 44622 - 44783 56 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|281423761|ref|ZP_06254674.1| ## NR: gi|281423761|ref|ZP_06254674.1| conserved hypothetical protein [Prevotella oris F0302] # 1 53 1 53 53 80 100.0 3e-14 MATAFFSFWAALIKIYSYFRLYTFMFIYVKNPADLVYVLSVTICKTIFDPQRG >gi|281304383|gb|ADEF01000072.1| GENE 33 45192 - 47117 975 641 aa, chain + ## HITS:1 COG:CAC1448 KEGG:ns NR:ns ## COG: CAC1448 COG0480 # Protein_GI_number: 15894727 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Clostridium acetobutylicum # 3 619 4 626 652 468 39.0 1e-131 MNIINLGILAHIDAGKTSVTENLLFASGATEKCGRVDNGDTITDSMDIEKRRGITVRAST TSIIRNGVKCNIIDTPGHMDFIAEVERTFKMLDGAVLILSAKEGIQAQTKLLFNTLQKLQ IPTIIFINKIDRDGVNLERLYLDIKTNLSQDVLFMQTIVDGLVYPICSQTYIKEEYKEFV CNHDDNILERYLADSEISPADYWNTIIDLVAKAKVYPVLHGSAMFNIGINELLDAISSFI LPPESVSNRLSAYLYKIEHDPKGHKRSFLKIIDGSLRLRDIVRINDSEKFIKIKNLKTIY QGREINVDEVGANDIAIVEDMEDFRIGDYLGAKPCLIQGLSRQHPALKSSVRPDRPEERS KVISALNTLWIEDPSLSFSINSYSDELEISLYGLTQKEIIQTLLEERFSVKVHFDEIKTI YKERPIKKVNKIIQIEVPPNPYWATIGLTIEPLPLGTGLQIESDISYGYLNHSFQNAVFE GIRMSCQSGLHGWEVTDLKVTFTQAEYYSPVSTPADFRQLTPYVFRLALQQSGVDILEPM LYFELQIPQSASSKAITDLQKMMSEIEDISCNNEWCHIKGKVPLNTSKDYASEVSSYTKG LGVFMVKPCGYQITKGDYSDNIRMNEKDKLLFMFQKSMSSK >gi|281304383|gb|ADEF01000072.1| GENE 34 47117 - 49435 787 772 aa, chain + ## HITS:1 COG:PA1611_1 KEGG:ns NR:ns ## COG: PA1611_1 COG0642 # Protein_GI_number: 15596808 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Pseudomonas aeruginosa # 265 516 231 492 516 122 32.0 3e-27 MERSGNFYKAIRLGYILISILIGCMAYNSLYEWQEIEALELGNKKIDELRKEINNINIQM IKFSLLGETILEWNDKDIEHYHARRMAMDSMLCRFKATYPAERIDSVRSLLEDKERQMFQ IVRLMDEQQSINKKIANQIPVIVQKSVQEQSKKPKRKGFLSIFGKKEGTKPTTTTTTLRS SNRNMVNEQKAQSRRLSEQADSLAARNAELNRQLQGLICQIEKKVQSDLQNRESEITAMR KKSFMQIGGLMGFVLLLLVISDIIIHRDAKNIKRYKRKTTDLIEQLEQSVQQNEVLITSR KKAVHTITHELRTPLTAITGYTELLRKECNSGNNGQYIQNILQSSDRMRDMLNTLLDFFR LDNGKEQPRLSPCRISAITHTLETEFMPVAVNKGLSLSVKTGHDAIVLTDKERIIQIGNN LLSNAVKFTEEGGVSLITEYDNGVLTLVVEDTGTGMTEEEQKQAFGAFERLSNAAAKEGF GLGLAIMRNIVSMLGGTIRLDSKKGKGSRFTVEISMQEAEEQLGYTSNTPVYHNNKFHDV VAIDNDEVLLLMLKEMYSQEGIHCDTCTDAAALMEMIRQKEYSLLLTDLNMSGINGFELL ELLRSSNVGNSPTIPVVVATASGSCNKGELLAKGFAGCLFKPFSISELMEVSDRCAIKET PDGKPDFSALLSYGNEAVMLEKLMTETEKEMQTIREAATEKDLRKLDSLTHHLRSSWEIL RADQPLRELYRLLHSDVIPDEEVLSHAVIAVLNKGAEIIRLAEEERRKYENG >gi|281304383|gb|ADEF01000072.1| GENE 35 49428 - 50750 570 440 aa, chain + ## HITS:1 COG:hydG KEGG:ns NR:ns ## COG: hydG COG2204 # Protein_GI_number: 16131834 # Func_class: T Signal transduction mechanisms # Function: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains # Organism: Escherichia coli K12 # 2 428 4 439 441 273 38.0 4e-73 MDKTKIIVVEDNIVYCEFVCNMLSREGYRTVKAYHLSTAKKHLQQATDNDIVVADLRLPD GNGIDLLRWMRKEGKMQPFIIMTDYAEVHTAVESMKLGSIDYIPKQLVEDKLVPLLRSIQ KERQAGQSRMPVFAREGSAFQKIMHRIRLVAATDMSVMIFGENGTGKEHIAHHLHDKSKR TGKPFVAVDCGSLSKELAPSAFFGHVKGAFTGADSTKKGYFHEAEGGTLFLDEVGNLALE TQQMLLRAIQERRYRPVGDKSDRSFNVRIIAATNEDLEVAVNEKRFRQDLLYRLHDFVIT VPPLRDCKEDIMPLAEFFREIANKELECNVSGFSSEARKALLTHTWPGNVRELRQKVMGA VLQAQEGVVMKEHLELAVTKPTSTVSFALRNDAEDKERILRALKQANGNRSVAAELLGIG RTTLYSKLEEYGLKYKFKQS >gi|281304383|gb|ADEF01000072.1| GENE 36 51030 - 51443 76 137 aa, chain + ## HITS:1 COG:no KEGG:BF0137 NR:ns ## KEGG: BF0137 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 137 1 137 140 270 93.0 1e-71 MGKVQILAVLTMDGCLSSELYDKTHQDLCLDRCGLDEIRKKALYRVTPDYSISMLHEWRK DGTNIRYLAEATPDTADYINGLLRMHAVDEIILYNVPFILGSGRHFFKSALPKQHWTLSS VKSYPNGVCRSIYTLDK >gi|281304383|gb|ADEF01000072.1| GENE 37 51691 - 52296 256 201 aa, chain + ## HITS:1 COG:no KEGG:BF0136 NR:ns ## KEGG: BF0136 # Name: not_defined # Def: tetracycline resistance element mobilization regulatory protein RteC # Organism: B.fragilis # Pathway: not_defined # 1 201 1 201 201 379 93.0 1e-104 MNYFLLAETDFFRLINEAGDCNMETAYTAFATQVIELCNGGMDANLTIIALAYIEIELQH HPVRNLSEERKEIAAYISKALSFIRKMQKFLATPQVPPLISANNATENTASLLQWTGNAI DLVELIYGIDEMGCINNGNMPLKQLAPLLYKIFGVESKDCYRFYTDIKRRKNESRTYFLD RMQEKLNERMMRDEELEIKRR >gi|281304383|gb|ADEF01000072.1| GENE 38 52479 - 53405 444 308 aa, chain + ## HITS:1 COG:PM1540 KEGG:ns NR:ns ## COG: PM1540 COG4823 # Protein_GI_number: 15603405 # Func_class: V Defense mechanisms # Function: Abortive infection bacteriophage resistance protein # Organism: Pasteurella multocida # 4 308 6 309 309 113 26.0 4e-25 MANKESRSIDEQIELLKQRGMLVGDEGFAARHLAHISYYRLKGYWWDMQSDRANHLFQPD SKLEDVITRYYFDKELRLILFDAIETIEITLRTKMIYHLSQSYGGLWYRDPRLFADVAFH TQHLKELIEEFLRSNEIFVKDYRRKHLVTDASGEKTLDEHPDAWIIFEVATFGTLSKIYK NLNHQLPEKSAIANDMGLNLHNELSGWLEAISYMRNIIAHHSRIWSRNMVKRPCEIHNPR MTWLSRPLTEVQQKKPFYVITAMLYLCNAIDEGHTFKEKLLALFEEYADVPIYKIGFFNR WKEEPIWK >gi|281304383|gb|ADEF01000072.1| GENE 39 53554 - 55557 1333 667 aa, chain - ## HITS:1 COG:alr7213 KEGG:ns NR:ns ## COG: alr7213 COG3505 # Protein_GI_number: 17233229 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD4 components # Organism: Nostoc sp. PCC 7120 # 202 559 117 466 589 91 26.0 4e-18 MSQQEDDLRALAKIMDFLRAVSIILVVMNVYWFCYEAIRLWGVNIGVVDKILMNFDRTAG LFHSILYTKLFAVLLLALSCLGTKGVKGEKITWRKIWTALAIGSVLFFLNWWILALPLPV EAVTGLYIITIGTGYVCLLMGGLWMSRLLKHNLMEDVFNNENESFMQETRLIESEYSVNL PTRFYYKKRWNNGWINVVNPFRASIVLGTPGSGKSYAVVNSFIKQQIEKGFSMYVYDFKF SDLSTIAYNHLLNHPEGYKVKPKFYVINFDDPRRSHRCNPIHPDFMEDITDAYESAYTIM LNLNKTWVQKQGDFFVESPIILFASIIWYLKIYQNGKYCTFPHAIEFLNRRYEDIFPILT SYPELENYLSPFMDAWLGGAAEQLMGQIASAKIPLSRMISPQLYWVMSDSEFTLDINNPE EPKILCVDNNPDRQNIYGAALGLYNSRIVKLINKKGMLKSSVIIDELPTIYFKGLDNLIA TARSNKVAVCLGFQDFSQLVRDYGDKEAKVVMNTVGNIFSGQVVGETAKTLSERFGKVLQ KRQSISINRQDVSTSINTQMDALIPPSKISGLTQGMFVGSVSDNFNERIEQKIFHCEIVV DAEKVKREESAYKKIPVITDFTDEDGNDRMKDTVQANYRRIKEEVKQIVQDELERIAGDD NLKHLLQ >gi|281304383|gb|ADEF01000072.1| GENE 40 55588 - 56835 791 415 aa, chain - ## HITS:1 COG:no KEGG:BF0132 NR:ns ## KEGG: BF0132 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 415 1 415 415 730 91.0 0 MVAKISVGSSLYGAIAYNGEKINEAQGRLLTTNRIYNDGSGKVDIGKAMEGFHTFLPPQM KVEKPVVHISLNPHPEDVLTDAELQDIAREYLEKLGFGNQPYLVFKHEDIDRHHLHIVTV RVDENGKCISDKNNYYRSKQITRELERKYGLHDAERRNRRLDTPLCKVDVSAGDVKKQVG NTLKALNGQYRFQTMGEYRALLSLYNMTVEEARGNVRGREYHGLVYSVTDDKGNKVGNPF KSSLFGKSAGYEAVQNKFARSKLEIKDRKLADMTKRTVLSVLQGTYDKDRFVSLLKEKGI DTVLRHTEEGRIYGATFIDHRTGCVLNGSRMGKELSANALQEHFTLPYAGQPPIPLSIPV DAADKAHGQTAYDREDVSGGMGLLTPEGPAVDAEEEAFIRAMKRKKKKKRKGLGM >gi|281304383|gb|ADEF01000072.1| GENE 41 56814 - 57317 333 167 aa, chain - ## HITS:1 COG:no KEGG:BF0131 NR:ns ## KEGG: BF0131 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 167 1 142 142 229 83.0 3e-59 MKEKRKSKAGRNPKLDPAVYRYTVRFNEEEHNRFLAMFGKSGVYARSVFLKAHFFGQPFK VLKVDKTLVDYYTKLSDFHAQFRAVGTNYNQVVKELRLHFSEKKAMALLYKLEQHTVELV KLSRQIVELSRELKEQREQSQTCLDSAESRLKKSETQMEAKWSQKSV >gi|281304383|gb|ADEF01000072.1| GENE 42 58027 - 58788 460 253 aa, chain + ## HITS:1 COG:no KEGG:BF0129 NR:ns ## KEGG: BF0129 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 253 97 349 349 490 95.0 1e-137 MSKEIFVAFATQKGGIGKSTVTALAASYLHNVKGYNVAVVDCDDPQHSIHGLREHETALI GRSIYFKALACDHFRKIKKNAYPVIKSNAVNALDDAERMIAAEVVKPDVVFFDMPGTLRS NGVIKTLSQMDYIFTPLSADRFVVESTLKFVTMFRDRLMTTGQAKTKGLHLFWTMVDGRE RNDLYGIYEEVIAEMGFPVLSTRLPDSKKFRRDLSEERKSVFRSTIFPMDTALLKGSGIR EFSEEISDIIRPQ >gi|281304383|gb|ADEF01000072.1| GENE 43 58791 - 59231 317 146 aa, chain + ## HITS:1 COG:no KEGG:BF0128 NR:ns ## KEGG: BF0128 # Name: not_defined # Def: conjugate transposon protein # Organism: B.fragilis # Pathway: not_defined # 1 146 1 146 146 238 94.0 6e-62 MGSRKVNTEGIDEELLLASIGRRTQDGTLRPAQEDPAAVPTGEDTAAPEPPPAQPVTRER AQREGGRRKRQDEDYNELFLRRNEIKTRQCVYISRDVHGKILKIVNDIAGGEISVGGYVD TVLRQHLEQHKERINELYKKQREDLI >gi|281304383|gb|ADEF01000072.1| GENE 44 59234 - 59587 138 117 aa, chain + ## HITS:1 COG:no KEGG:BF0127 NR:ns ## KEGG: BF0127 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 117 1 117 117 228 97.0 4e-59 MEKEMTPNEKRPQQDCGGMLAQVQASVEILSPVPVSGKCCEKDYERLFIRDPEVKAREGK MAYVRPEYHERIMRITRVIGHDRLTLSAYIDHVLTHHFNQCEDAIKSLYARNYNSVF >gi|281304383|gb|ADEF01000072.1| GENE 45 59604 - 60332 612 242 aa, chain + ## HITS:1 COG:no KEGG:BF0126 NR:ns ## KEGG: BF0126 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 7 242 1 236 236 387 88.0 1e-106 MNETISMTDILLAVSVGCNLWFLFLLLYERIMDMRLVRFFKGIAGLWRSLDRNGPKSVAA HEEVSTAKGDIIGKSRFKMASTRTIAAIPAQEAATLEKGIELSEKEATFDDGNTETASRP AQVPEEKLDETFTSMPPEELGYGEDEPDEDASDTPRASGSSFDEIDDACKTAMNPDATQA EREKAAKVFTDMEGTELYEKMMEGSSEIGIRIKGLIEIRLKKPEKEFIVPDNIEDFDIRN YV >gi|281304383|gb|ADEF01000072.1| GENE 46 60367 - 60828 76 153 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|260885901|ref|ZP_05897250.1| ## NR: gi|260885901|ref|ZP_05897250.1| conserved hypothetical protein [Prevotella tannerae ATCC 51259] # 99 153 1 55 55 107 98.0 3e-22 MVAATIRKIHAPNQLAAVFEVSGSPDENFPYTFTPPISPTTAPMAYISLVPGSKYELTIE VASLMPAMPFPCAKAEAVAAMKSAADRIAFLFFKMFLFMNCPCFLPSKGWIVLCRAVVTL LLYFGFSGCPFVSTDVGVSVADGIRLAFPCRVG >gi|281304383|gb|ADEF01000072.1| GENE 47 60862 - 61194 225 110 aa, chain + ## HITS:1 COG:no KEGG:BF0124 NR:ns ## KEGG: BF0124 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 108 1 108 110 211 98.0 8e-54 MAEYPVNKGIGRPVEFKGLKAQYLFIFCGGLLALFVLFVILYMVGIDQWICIGFGAASSS LLVWQTFALNARYGEHGLMKLGASRSHPRYLINRRRITRLFKRQRKEETT >gi|281304383|gb|ADEF01000072.1| GENE 48 61209 - 63695 1545 828 aa, chain + ## HITS:1 COG:PSLT088_2 KEGG:ns NR:ns ## COG: PSLT088_2 COG3451 # Protein_GI_number: 17233453 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirB4 components # Organism: Salmonella typhimurium LT2 # 426 738 184 483 593 85 25.0 5e-16 MTTLENKFPLLAVEHGCIISKDADITVAFEVELPELYTVTGAEYEAIHGCWCKAIKVLPD YSVVHKQDWFIKERYKPELQKDDMSFLSRSFERHFNERPYLKHTCYLYLTKTTKERSRMQ SNFSTLCRGHIIPKELDRETTTKFMEACEQFERIMNDSGLVRLRRLSTDEIVGTEGKAGL VERYFSLMPEGDITLQDIELSAREMRIGDNRLCLHTLSDAEDLPGKVATDTRYEKLSTDR SDCRLSFASPVGLLLSCNHIYNQYVLINNSEEALQKFEKSARNMQSLSRYSRSNSINREW IDQYLNEARSYGLTSVRAHFNVMAWSDDAEELKHIRNDVGSQLASMECVPRHNTIDCPTL YWAAIPGNAADFPAEESFHTFIEQAVCLFTEETNYRSSLSPFGIKMVDRLTGKPLHLDIS DLPMKRGITTNRNKFVLGPSGSGKSFFMNHLVRQYYEQGAHVVLVDTGNSYQGLCGMIRR KTGGVDGVYFTYTEEKPISFNPFYTDDYIFDVEKKDSIKTLLLTLWKSEDDKVTKTESGE LGSAVSAYIERIQSDRSIVPSFNTFYEYMRDDYRTELAQRDIKVEKSDFNIDNMLTTMRQ YYRGGRYDFLLNSTENIDLLGKRFIVFEIDSIKENRELFPVVTIIIMEAFINKMRRLKGV RKQLIVEEAWKALSSANMAEYLRYMYKTVRKYYGEAIVVTQEVDDIISSPVVKESIINNS DCKILLDQRKYMNKFDQIQALLGLTEKEKSQILSINMANNPSRLYKEVWIGLGGTQSAVY ATEVSAEEYLAYTTEETEKVEVYRLAEKLGGDIEAAIRQLAERRRNKE >gi|281304383|gb|ADEF01000072.1| GENE 49 63734 - 64114 253 126 aa, chain + ## HITS:1 COG:no KEGG:BF0122 NR:ns ## KEGG: BF0122 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 126 1 126 126 256 97.0 2e-67 MNLPKVKMLQVSKCLIGLAVMMLQSCDVADNRRDMLCGNWESVEGKPDVLIYKEGEAYKV TVFRRSGLRRKLKPETYLLQEKTGNLFMNTGFRIDVSYNEATDVLTFSPGGDYVRVKPQP GHPTEE >gi|281304383|gb|ADEF01000072.1| GENE 50 64138 - 64767 622 209 aa, chain + ## HITS:1 COG:no KEGG:BF0121 NR:ns ## KEGG: BF0121 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 209 1 209 209 389 99.0 1e-107 MRTRITMIICLCLLFAGRASAQWVVSDPGNLAQGIINASKNIIHTSKTATNMVSNFQETV KIYQQGKKYYDALKSVNNLVKDARKVQQTILMVGDITDIYVNSFQRMLRDGNFRPEELSA IAFGYTKLLEESNEVLTELKNVVNITTLSMTDKERMDVVERCHSKMKRYRNLVSYYTNKN ISVSYLRAKKKNDLDRIMGLYGNMNERYW >gi|281304383|gb|ADEF01000072.1| GENE 51 64771 - 65775 763 334 aa, chain + ## HITS:1 COG:no KEGG:BF0120 NR:ns ## KEGG: BF0120 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 334 1 334 334 620 96.0 1e-176 MNFDNLHQILRSLYEQMMPLCGDMAGVAKGIAGLGALFYVAYRVWQSLARAEPIDVFPML RPFAIGLCIMFFPTVVLGTINSILSPVVQGTAKMLEAETLDMNTYRQQKDKLEYEAMMRN PETAYLVSNEEFDKQLEELGWSPSDMVTMAGMYIDRGMYNMKKNIRDFFREILELLFQAA ALVIDTVRTFFLVVLAILGPIAFAISVWDGFQSTLTQWICRYIQVYLWLPVSDMFSTILA KIQVLMLQSDIERMQADPNFSLDSSDGVYIVFLCIGIIGYFTIPTVAGWIIQAGGMGGYG RNVNQMAGRAGGMAGSVAGAATGNMMGRAGKLLK >gi|281304383|gb|ADEF01000072.1| GENE 52 65809 - 66432 405 207 aa, chain + ## HITS:1 COG:no KEGG:BF0119 NR:ns ## KEGG: BF0119 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 207 1 207 207 400 99.0 1e-110 MEFKSLRNIESSFRQLRLFGIVFLSLCAVVTVWSVWNSYRFAEKQREKIYVLDNGKSLML ALSQDLSQNRPAEAREHVRRFHELFFTLSPEKSAIEHNVKRALLLADKSVYHYYSDFAEK GYYNRIIAGNINQVLKVDSVVCDFNAYPYRAVTYATQKIIRQSNVTERSLVTTCRLLNAS RSDDNPNGFTIEGFTIIENKDLQTIKR >gi|281304383|gb|ADEF01000072.1| GENE 53 66460 - 66747 179 95 aa, chain + ## HITS:1 COG:no KEGG:BF0118 NR:ns ## KEGG: BF0118 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 95 8 102 102 174 90.0 8e-43 MWGMYWKLHDKRKRLVARLKGYLDGLPPETRRRIVLGMLAAFAMLALYTFGRAVYDIGRN DGSRMDTGHAGRVELPTPVETDNHLTPYLYGTDEE >gi|281304383|gb|ADEF01000072.1| GENE 54 66728 - 68074 864 448 aa, chain + ## HITS:1 COG:no KEGG:BF0117 NR:ns ## KEGG: BF0117 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 447 1 449 450 759 93.0 0 MEQTKNESTKENKAAPDAGKPKKEREPLTEAQRLKRQKMIVLPAMVLVFIGAMWLIFAPS SGKEQPPGTDGYNTEMPDADKANRQIIGDKLKAYEHGEMEERLESRNRAIGQLGDMFDRE IAGTEDGTDFDLANPGGKEERAKPATPQTIQSSAAAYRDLNATLGNFYEQPKNDNAEMDV LLERIASLESELESEKGRTSSIDEQVALMEKSYELAAKYMGGQNGGKPEQAAEPATVQKG KKNTATPVRQVTRQVVSSLAQPMSNAEFVATFSQERNRGFNTAVGTAEVSDRNTIPACVH EAQSVTDGQTVRLRLLEPMAVAGRTIPRGAVVVGTGKIQGERLDIGITSLEYDGTIIPVE LAVYDTDGQPGIFIPNSMEMNAVREVAANMGGSLGSSINISTNAGAQLASDLGKGLIQGT SQYIAGKMRTVKVHLKAGYRVMLYQEKD >gi|281304383|gb|ADEF01000072.1| GENE 55 68111 - 68536 377 141 aa, chain + ## HITS:1 COG:no KEGG:BF0116 NR:ns ## KEGG: BF0116 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 135 1 135 328 271 97.0 7e-72 MRKVIIMFALAMGIATANAQENVTVETTNGSEQPTLTKEVYPQKEADGDLYHGLSRKLTF DRMIPPHGLEVTYDKTVHVIFPAEVRYVDLGSPDLIAGKADGAENVIRVKATVRNFPNET NMSVITEDGSFYTFSAPIIGA >gi|281304383|gb|ADEF01000072.1| GENE 56 68555 - 68710 58 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MIRLVFQFINLSQTDLSEWETKRGVKHVGNAISQLIAKLRLNCYGKRQTRG >gi|281304383|gb|ADEF01000072.1| GENE 57 69077 - 70888 624 603 aa, chain + ## HITS:1 COG:Q0050 KEGG:ns NR:ns ## COG: Q0050 COG3344 # Protein_GI_number: 6226520 # Func_class: L Replication, recombination and repair # Function: Retron-type reverse transcriptase # Organism: Saccharomyces cerevisiae # 28 599 255 823 834 291 33.0 2e-78 MRNPETILNSLSAHSKDVHYKYERLYRILFNEQMFYVAYQRIYAKPGNMTPGSDGKTIDG MSVDRIGHLIAALKDESYMPTPARRVYIPKKNGKKRPLGIPSIEDKMVQEVVRLILEAVY EGHFEKSSHGFRPRRSCHTALRSIQTLFTGANWFIEGDIKGFFDNIDHHILIETLRERIS DERFLRLIWKFLKAGYIEDFTFHKTYSGTPQGGIISPILANIYLDKFDKYMREYAESFDK GKKKRENPLHASYSRKAVRLRKTIRNATDEDTKRELLTQLKEVEAKTRRVPASMAMDSNY KRLKYIRYADDFLIGVIGSKADCAKMKENFTIFMRDKLKLELSEEKTLITNAQDSAKFLG YEISVRKSEAMKRNKLGWLKRPFSGRIILTLPIASVQKKLLELKAMELRVINGKEIWYAM PRNYLTKEDPATICARYTTEIRGLYQYYRIADNISFAGSKFGYIMRYSFCKTLAKKLNSS TAKVIRKYRRDHDLAIPYQAKKGETKFRIFYNDGFARQEPDKDATCDNLPNTFVLPFPTL AERLMEHKCELCGATNVKTVMYQVRKLKGINTDTEWHRLMIKKWRKTLAVCKHCNAKIHA HDK >gi|281304383|gb|ADEF01000072.1| GENE 58 70872 - 71585 367 237 aa, chain + ## HITS:1 COG:no KEGG:BF0116 NR:ns ## KEGG: BF0116 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 42 237 133 328 328 397 98.0 1e-109 MPMTNKLILPAESRMQGDLHVRFGGRLWETYHRKVVRRPSPSLHVKYAAEPLLLNVEMCD FIHDGSTVNRPNNAQEIYLKELGSESPMLVRLIMKSIHKQNKREVKHIGCKRFGIQYLLK GIYTHNGLLYFHTEIKNQSNVPFDVDYITWKIVDKKVAKRTAVQEQIILPLRAQNYATLV PGKKSERTVFTMAKFTIPDDKCLVVELNEKNGGRHQSFVIENEDLVRAGTINELQVR >gi|281304383|gb|ADEF01000072.1| GENE 59 71573 - 72172 290 199 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302483505|gb|EFL46507.1| ## NR: gi|302483505|gb|EFL46507.1| hypothetical protein HMPREF9296_0827 [Prevotella disiens FB035-09AN] # 1 199 67 265 265 318 84.0 1e-85 MPVSVDDELDADPELRVELPRVATPQATLTQVGKQGDTVCHVALHIERQRTAVDEGVPVV QRGAVMQHLIPPIHRFISGESRSPGIDEHDFSGVRQYLEVISALRRELRHGYLGILVGIV FQEVFATEHPLVPPLRVSGESRPETVPAVLAAGIEAVRHVRPHLDALHLRQTPLGVRLPC KKGKRRDDYCDVLSHGQRT >gi|281304383|gb|ADEF01000072.1| GENE 60 72171 - 73073 219 300 aa, chain + ## HITS:1 COG:no KEGG:BF0114 NR:ns ## KEGG: BF0114 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 300 1 300 300 569 90.0 1e-161 MERTEIDAIRRMPLADFLARLGHEPVRRSGNELWYIAPYRGERTPSFRVNVAKQLWYDFG LGKGGDIFTLAGEFLQSDDFMKQAKFIAEAANMTVAGWEKPAYLPKPTEPVFEDVEVAPL FRSPLTEYLEERGIPIGVASRHCCRLNYSVRGKRYFAVGFLNMAGGYEVRSRYFKGCIPP KDVSLARTKEIPADECLVFEGFMDFLSAVTLGVTGNADCLVLNSVANVEKAAGLLDGYGR IGCFLDRDEAGRRTLDALAKRYGAHVADRSSLYGGCKDLNEYLQQTTKKQKNNHLKIEEK >gi|281304383|gb|ADEF01000072.1| GENE 61 73070 - 73573 481 167 aa, chain + ## HITS:1 COG:no KEGG:BF0113 NR:ns ## KEGG: BF0113 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 167 1 167 167 302 91.0 3e-81 MNILNNRNKRTNIFKVVALCLIAAVSFTIVSCDDDMDIQQSYPFTVEVMPVPNKVTKGQT VEIRCELKKEGDFANTLYTIRYFQFEGEGKLKMDNGITFLPNDRYLLENEKFRLYYTAEG EEAHNFIVVVEDNFGNSFELEFDFNNRNAKDDGLTIVPIGNFSPLLK >gi|281304383|gb|ADEF01000072.1| GENE 62 73725 - 73886 72 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MALGKAPPIRGLGSQDFAGRKVLGTNHDEAAGGRAPAERPAEVLRDVPAVREG >gi|281304383|gb|ADEF01000072.1| GENE 63 73861 - 74097 72 78 aa, chain + ## HITS:1 COG:no KEGG:BF0112 NR:ns ## KEGG: BF0112 # Name: not_defined # Def: lysozyme # Organism: B.fragilis # Pathway: not_defined # 1 78 97 174 174 141 91.0 8e-33 MFRQFGKDSLLLATLAYNVGPYRLLGSKTIPKSTLIKKLEAGDRNIYREYVAFCNYKGKR HAMLLKRRKAEFALLYIP >gi|281304383|gb|ADEF01000072.1| GENE 64 74149 - 74370 171 73 aa, chain - ## HITS:1 COG:no KEGG:BF1096 NR:ns ## KEGG: BF1096 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis_NCTC9343 # Pathway: not_defined # 1 73 2 74 74 73 45.0 2e-12 METIRQDGKIILHGNDGISIKMIFKNLTGKNFQGREYADYIRHIAIGSMGFTSGSIEFCR DGDVIDTGTIPNV >gi|281304383|gb|ADEF01000072.1| GENE 65 74488 - 74796 278 102 aa, chain - ## HITS:1 COG:no KEGG:BF0110 NR:ns ## KEGG: BF0110 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 102 38 139 139 182 93.0 3e-45 MIAQTILQQIGGRRFTAMTGSRDFIDMGNGLRMSLTRNKTSANRLDIIYDAGADLYNMRF YRRTFSKKTFECKEKYIAVHEGIYFDMLEEIFTMVTGLYTRF >gi|281304383|gb|ADEF01000072.1| GENE 66 74851 - 75096 233 81 aa, chain - ## HITS:1 COG:no KEGG:BF0109 NR:ns ## KEGG: BF0109 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 81 28 108 108 150 96.0 2e-35 MNTTYQTLIVKFSEPITALDGIFDDAQAWGTDTLKGWIDDYESTRFTATDSHTAVITSEY NMECVKEWLQRQTPIAEMREF >gi|281304383|gb|ADEF01000072.1| GENE 67 75093 - 75323 227 76 aa, chain - ## HITS:1 COG:no KEGG:BT_2286 NR:ns ## KEGG: BT_2286 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 73 1 72 72 69 56.0 4e-11 MATRMTINGVSTCTEAGTEKYERFQSGIGRRRRTLVQYDYRHTDGELFACVKTTLDECRT ARDKWLNAKQGKEGNR >gi|281304383|gb|ADEF01000072.1| GENE 68 75343 - 75600 224 85 aa, chain - ## HITS:1 COG:no KEGG:BF0108 NR:ns ## KEGG: BF0108 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 85 1 85 85 155 96.0 3e-37 MEVRIESMICVWDDKIPALFLEFVNLLTLTTSEGELRKSVKEFAEKHELDKFFLYGFGSH HFYLHQRYTSNPEMVMKNRVLSVHF >gi|281304383|gb|ADEF01000072.1| GENE 69 75625 - 76956 838 443 aa, chain - ## HITS:1 COG:no KEGG:BF0107 NR:ns ## KEGG: BF0107 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 443 1 443 443 816 93.0 0 MKPKTKIQKEVARLSANLRPISTTQIEWAYRHCIEHIGYRTKKGNITCSDCGHEWHSDSV LCDTLEGCTCPKCHAELKVQDTRKRIYKETQYFSVITTCKGYQVIRVAQVRCESRKGEPM HFYCHEVVQRWISPDGKVTDMALLRGFTFCYCDVWALCSAMEIRPHNSLYDDVVARSCAY PKMRVLPQLRRNGFKGDFHGISPVRLFKALLSDPRIETLMKGGEIEVMKHFLFNARTADE CWASYLIAKRHKYLIDNFSMWCDYLRMLNKLGQDLRNPKNICPEDFMAAHDNATRKIETI HEKERAEQRRRWEIERREREQQRQLQREKDAEDFIANKSKFFGLVITDEEIIIKVLESID EYYSEGKAQNICVFGSEYYKKADTLILSARIGGEIIETVEVDLRTLKVVQCHGKYNQDTE YHERIIDLVNKNANLIRERMKVA >gi|281304383|gb|ADEF01000072.1| GENE 70 76953 - 77369 289 138 aa, chain - ## HITS:1 COG:no KEGG:BF0106 NR:ns ## KEGG: BF0106 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 138 1 138 138 236 91.0 1e-61 MKGTDHFKRTIQMYLEQRAEEDTLFAKKYRNPAKNIDECVTHILNYVQKSGCSGFTDGEI FGQVIHYYEENEIEVGKPMNCQVVVNHVVELTEEEKAEARQNAVRRYQEEELRKLQNRNR PSARKETHPQPSLFDLGL >gi|281304383|gb|ADEF01000072.1| GENE 71 77383 - 77604 179 73 aa, chain - ## HITS:1 COG:no KEGG:BF0105 NR:ns ## KEGG: BF0105 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 1 73 59 131 131 142 93.0 4e-33 MAKRNCKTVAQQCKYYEVDNIFVYMVETYINGNFSTFRRLYHELNKDARRDFMDFLLSEV EPTYWREILKQTI >gi|281304383|gb|ADEF01000072.1| GENE 72 77616 - 77831 187 71 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302483499|gb|EFL46501.1| ## NR: gi|302483499|gb|EFL46501.1| conserved domain protein [Prevotella disiens FB035-09AN] # 1 71 1 71 71 90 94.0 4e-17 MTATANFRQVAQYIGLAICGLMMRTAFGVFGILWGIIREIVNGVFRVAIGVIVAILFTIA FFGFILWLFTL >gi|281304383|gb|ADEF01000072.1| GENE 73 78896 - 80857 2080 653 aa, chain - ## HITS:1 COG:all4183 KEGG:ns NR:ns ## COG: all4183 COG0488 # Protein_GI_number: 17231675 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Nostoc sp. PCC 7120 # 1 535 1 534 564 403 42.0 1e-112 MISVEGLCVTFGVKPLFKDVSFVVNERDRIALVGKNGAGKSTLLKILKGLQQPTNGVVAV PNDTTIGYLPQVMKLADDTTVKEETRKAFADNLRIKALLEEMQHEMATRTDYESTDYLNL VERFTQEHERYLMLGGENYEAEIERTLVGLGFEQKDFERPTSEFSGGWRMRIELAKILLR RPDVLLLDEPTNHLDIESIQWLEQFLVQSAKAVVLVSHDRAFINNVTNRTLEITCGQIED YKVKYDEYVTLRAERREQQLRAYENQQKEIADTKAFIERFRYQATKAVQVQQRIRQLEKI VPIEVDEVDNKRMHLKFPPCLRSGDYPIICDQLRKDYGAHTVFSGVTFTIKRGEKVAFVG KNGEGKSTLVKCIMGEIPFTGTLKVGHNVQIGYFAQNQAQLLNEELTIYETIDRVATGDM RLKINDLLGAFMFGGETSEKKVKVLSGGERSRLAMIQLLLQPVNLLILDEPTNHLDMASK DVLKEAIQAFDGTVILVSHDRDFLNGLVDKVYEFGGGCVREHLGGIYDFIRSHAEATDGL ASQQSIDAILQNKSVTMAATVQSAPSTEEKGGVDDYQQRKEQQRKLRKLKRDIEESETKI AKMEKRITELNALLSQPENASDMELVTEYTTTQRVLDKENERWMELSEKMEKL >gi|281304383|gb|ADEF01000072.1| GENE 74 81106 - 82938 1298 610 aa, chain - ## HITS:1 COG:YPO2561 KEGG:ns NR:ns ## COG: YPO2561 COG0471 # Protein_GI_number: 16122779 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Yersinia pestis # 10 610 14 610 610 368 36.0 1e-101 MILTLVVLLVTVIFFVIGRLRADIVALCALCVLLVAGVLTPEEAFSGFSSNVVIMMVGLF VVGAAVLQTGLAKALSQKIIQLAKGSEIRLFLLVMLTTSFIGAFVSNTGTVALMMPIVVS MAAQSNSSPGKLLMPLAFASSLGGMLTLIGTLPNLVIQETLVDAGYEPLTFFSFTPVGIV CIAVGIIVLLPLSRMFLGKDKKKGGRRKPKDKSLDELVTEYHLQNYLQAYRIGNHSPLHG KTVAELDLHNRRGLSIIEIRNDSSSSGRIIRQVKQKVPKPSTVLQSGDVLYLTGDIKDMD VFATKNSLAKLDNSSVDFYDIGMAELVLMPNSRITSIRLKDSSIGEKYNINVVGIRRRRD YLVKDLAEQKLQAGDVLLVQGLWSNIDRLEIAETDWVVLGRPIEQASKVTLNYKAPIAAF IMLLMICMMVFDFIPIQPVTAVMIAGLLMVLTGCLRNVEAAYKAINWSSIVLIAAMMPMS IALEKTGVSSFISQSLVDSLGDMGPMILLAGIYYTTTFVTMFVSNTATAVIMSPIAMSAA SQIGVSPYAFLFAVTLGASMCFASPFSTPPNALVMKAGQYEFMDYIKVGLPLQLLIGVVM TFVLPLLFPF >gi|281304383|gb|ADEF01000072.1| GENE 75 83439 - 84200 496 253 aa, chain - ## HITS:1 COG:BB0533 KEGG:ns NR:ns ## COG: BB0533 COG1235 # Protein_GI_number: 15594878 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Borrelia burgdorferi # 4 253 4 253 253 167 36.0 3e-41 MKLTFLGTGTSGGVPSLGCHCAVCESHDPHDKRLRTAALLETDTTRILIDCGPDIRQQLM PFPFQPLDAVLLTHIHYDHVAGIDDLRPFCVFDSLQIYADEPTAEALHRTMPYCFGAHLY PGVPLLDLHVVQPHQELRIGDIDIMPFQVMHHKLPILGFRFGSFAYITDMKTIRDEEMPF LSGVKTLVVNALRYEPQHHSHMTVAEAIEFTNRVGAKQTYLVHMSHGIGLHHDVNLQLPD DIQLAYDGLQIEV >gi|281304383|gb|ADEF01000072.1| GENE 76 84197 - 85210 835 337 aa, chain - ## HITS:1 COG:NMB0811 KEGG:ns NR:ns ## COG: NMB0811 COG0812 # Protein_GI_number: 15676709 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Neisseria meningitidis MC58 # 4 337 5 340 346 278 44.0 1e-74 MLDRKNYSLQQHNTFGIDARCRRFIAFDSKEELQQALSTLTPQDEPFMPLGEGSNLLLTK DFEGTVLHSRIQFVDIKIEDSIATVKAGSGVIWDDLVAACVEQKAYGLENLSLIPGTVGA AAVQNIGAYGCEVKDFIQTITAVEIATGHEVTFTNADCQYAYRYSKFKGEWKNKYVIISV ELKYNCTYSPHLDYGNIQSEVQRKGIEHPTPQQLRDTIIAIRQAKLPDPKVQGNAGSFFM NPIVSMQQYQALAVRYPKMPHYQIDGLSVKIPAGWLIEQCGWKGKTLGRAGVHDKQALVL VNRGGASGSDIERLCKEIQKDVSERFGIAIHPEVNIL >gi|281304383|gb|ADEF01000072.1| GENE 77 85220 - 86101 567 293 aa, chain - ## HITS:1 COG:no KEGG:PRU_0583 NR:ns ## KEGG: PRU_0583 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 11 290 2 276 279 248 46.0 3e-64 MIKEKNNLLRKATFVALGFFVLISLLFSTAGCFDKKPTAVDTLAVDSATTDTLDDDTLSN IIAESPMSKSADELFDDFFFNFAANKKLQYKRIKFPLPVMKNGKQERTITKNQWKMDYFF MKQGYFTLIFDRFKQMEVVKDTTVRNVTVEKILFPIKTIKQYQFERINGEFMLTSIIYQP IHESVNGSFLNFYQRFAVDSAFQIKSLNETVEFTAPDPDDDFGTITGSIVPEQWPGFKPP IIPKGTIYNIIYGQKYVAGKQKLFVVRGIATDLEVIMLFRHRKDGWKLMKFNS >gi|281304383|gb|ADEF01000072.1| GENE 78 86294 - 87331 922 345 aa, chain + ## HITS:1 COG:BS_pheS KEGG:ns NR:ns ## COG: BS_pheS COG0016 # Protein_GI_number: 16079916 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Bacillus subtilis # 8 344 11 344 344 311 44.0 1e-84 MILDKIDELLKEVSNLSAKNADEVEQLRLKYLSKKGEINALMADFRNVAADEKKTVGMKI NELKQLAKDRINSLKDTVGTANESSVSLDLTRSAYPIRLGTRHPLTIVKNEICNIFQRMG FTLADGPEIDDDLHVFTKLNFAPDHPARDMQDTFFIHKHPNDVTKNVLLRSHTSGDQSHY METHEPPIRIICPGRVYRNEAISARAHCFFHQVEGLYIDKNVSFTDLKQVLLTFAREMFG PDTDIRLRPSYFPFTEPSAEMDISCFICGGEGCGFCKQTGWVEILGCGMVDPNVLEACGI DSKVYSGYAFGMGVERITNLKYRVSDLRLFSENDLRFLKEFEAAH >gi|281304383|gb|ADEF01000072.1| GENE 79 87673 - 88824 683 383 aa, chain - ## HITS:1 COG:alr4031 KEGG:ns NR:ns ## COG: alr4031 COG0614 # Protein_GI_number: 17231523 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Nostoc sp. PCC 7120 # 10 382 49 424 426 194 30.0 3e-49 MIKCNSSFSLIACGILMMTSITMGCQSKQSKKSTHEGTKVELKYAEHIQMQKYPLFTVVT LANPWDEGKVLHTYVLVNRKDSARVNHLPKGTLVYTPIERSVVFSTAHCKLLESLGALDA IAGVADLKYILIPAIQHRVTTGKIVDCGDGMSPNIERMIALHPQALLLSPFENSGGYGKL EGLGCPVIELADYMETSPLGRAEWMKFYGMLFGCEQRADSLFAVVDSAYQQLKSQAQSWP EGASLLTERQTGSVWYCPGGKSTIGQMIADAHGKYAFSADKHSGSLALSFEEVLEKAGNS EVWAFKYHGEHPMTKQDLLAEYRGYRVLRAFKQGKIYGCNSRIKPYFEETPFRPDFLLRD IIIMLHQPHASCLGKLRYYEPLP >gi|281304383|gb|ADEF01000072.1| GENE 80 89688 - 91160 1377 490 aa, chain + ## HITS:1 COG:VC1314 KEGG:ns NR:ns ## COG: VC1314 COG0471 # Protein_GI_number: 15641326 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Vibrio cholerae # 19 484 22 482 487 378 47.0 1e-104 MEQENANILGGQLRKKNLIEFICIIILTAIVWNLPTDIFGIDGLTIVQQRIIAIFVFATL SWITEAIPSWATSLAIITVMCLTVSNNSLAFFKGEENDVFGTLLKSKEIMATFANPVIML FLGGFILAIAATKSGLDVLLAKNLIKPFGKKSENVLLGFLLITGVFSMFVSNTATAAMML TFLTPVFAALPASGKGRIALTLSIPVAANLGGMATPIGTPPNAIALQALNNPDGLNLGID FGEWMAFMFPLVIVLLLISWRIILNFFPFTQKTIELEIKGHISHGWRMWVVCATFILTIL LWLIPRDITGIDSNTVAMVPMGIFAVTGVITGKDLQAINWSVIWMVAGGFALGLGMNGSG LADCAIESIPFHQFSPIIILMLSGLICYFLSNFISNTATAALLVPILAVVCSGMGDTLNT IGGTATILIGIAIAASSAMCLPISTPPNAIAYSTGLVKQNDMLKVGLTVGIISMILGYFV LFFIGGSHFL >gi|281304383|gb|ADEF01000072.1| GENE 81 91283 - 92869 1544 528 aa, chain + ## HITS:1 COG:PA0761 KEGG:ns NR:ns ## COG: PA0761 COG0029 # Protein_GI_number: 15595958 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate oxidase # Organism: Pseudomonas aeruginosa # 4 522 6 520 538 459 45.0 1e-129 MVQEYDFLIIGGGIAGMSYALSVANSGKGKVALVCKTTLDEANTAKAQGGIASVTNLAVD NFEKHINDTMIAGDYISDRAAVEQVVRNAPKAIQSLVNWGVNFDKKQNGEYDLHREGGHC EFRILHHQDDTGFEIQRGLMAAVLKHPNIKVLENHYAVEIITQHHLGQTVTRKTQDIECY GAYILNPDTNKIDTYLSKVTLMATGGTGAVYAMTSNPIIATGDGIAMVYRAKGTVKDMEF VQFHPTVLFNPAETHPAYLITEAMRGYGAILRLPNGEEFMQKYDERLSLAPRDIVARAID REMKIHGLDHVCLDVTHKDAEETKKHFPHIYEKCLSIGIDITKQYIPVCPSAHYMCGGIK VDLHGESSIHRLYAVGECSCTGLHGGNRLASNSLIEAAVYAKAAAEHSVSVIDHYSFNTN VPEWNDEGTMTNEERILITQSVREVGEIMSNYVGIVRSDLRLKRAWDRLDLLYEETEKLF KSVTATRDICELRNMINVGYLITRQAIERKESRGLHYTVDYPKHAYDR >gi|281304383|gb|ADEF01000072.1| GENE 82 92958 - 93950 947 330 aa, chain + ## HITS:1 COG:all4673 KEGG:ns NR:ns ## COG: all4673 COG0379 # Protein_GI_number: 17232165 # Func_class: H Coenzyme transport and metabolism # Function: Quinolinate synthase # Organism: Nostoc sp. PCC 7120 # 21 325 20 323 324 346 55.0 5e-95 MVDKKWQELGYIDEPIPEGTDIKAEIRKMCKEKNALIMAHYYTEASVQDIADFIGDSLAL AQKAATTDADIIVMCGVHFMGETNKILCPDKKVLIPDLNASCSLAESCPADAFEKFVKAH PNHTVVSYVNTTAATKALTDVVVTSSNARQIVESFPKDTPMIFGPDRNLGNYINKLTGRD MLVWDGACHVHEKFSVERILELKAQHPNAKILVHPECKGPVVKLADKVGSTKALLNYSIH DEAQEFIVATESGILTEMQKSAPQKTFIPAPPDDSTCACNECSYMKLITMRKLYNCLKYE WPTVEVEPEIAKKAIKPIHRMLEISKQLGL >gi|281304383|gb|ADEF01000072.1| GENE 83 93983 - 94858 784 291 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163755345|ref|ZP_02162465.1| 30S ribosomal protein S6 [Kordia algicida OT-1] # 1 283 1 284 286 306 56 4e-82 MLSVNQLNDKLIELAFSEDIGDGDHTTLCCIPATAMGESKLLIKDEGIFAGVEIAKQIFH KFDPTLSVEVYIQDGAPVKPGDIVMSVKGKEQSLLQTERLMLNILQRMSGIATMTHKYQQ ALIDAGTKTRVLDTRKTTPGMRMLEKEAVRIGGGMNHRIGLFDMILLKDNHIDFCGGVHN AISRAKQYIKEHGKDGMKIECEVRDFQELEEALTEGCDRIMFDNFSPEDTRKAVAMVNGK CETESSGGITFDTMIPYAKAGVDFISFGALTHSVKVLDMSFKAAGSNKLKV >gi|281304383|gb|ADEF01000072.1| GENE 84 94990 - 96078 900 362 aa, chain - ## HITS:1 COG:SMb21204 KEGG:ns NR:ns ## COG: SMb21204 COG0842 # Protein_GI_number: 16264618 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Sinorhizobium meliloti # 3 349 6 356 370 144 27.0 4e-34 MTLRYLIQKEFIQIRNNPFIPKLILFFPIAIMLIYPWITNLEVKNIYISVVDNDHSTLSQ RLVQRLQASPYFKFTGTAPTYPIALQQIERNDADIVLVIPPNYERNQVIGNPQPVLIAAN AVNGTKGGMGSSYVANIVNQNLQDLQIKPMKSPFSTLALFNPHKNYKLFMIPALMTLVLI MLCGFLLALNIVSEKEKGTIEQMNVTPVSKLQFILSKMIPYWFISMFVLTECILLAWMVY GIYPAGNIGLIYLLSMMMALIFSGIGLIISNYSDAMQEAMFVMFFIIMFVMLLSGLFTPV SSMPDWARSMTVINPVTYYIDGMRTVFIRGGNFAGIAENAFILMIFAVVIDVWAVISYKK IN >gi|281304383|gb|ADEF01000072.1| GENE 85 96075 - 97169 872 364 aa, chain - ## HITS:1 COG:CAC3268 KEGG:ns NR:ns ## COG: CAC3268 COG0842 # Protein_GI_number: 15896513 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Clostridium acetobutylicum # 3 362 5 374 378 189 31.0 1e-47 MNQFISFVIKETKHIVRDRRTMLILFGTPVVMMLIFGFAITTDIRNVKVTVVTAVMNPRI QQVVQRIDASEYFVVTQTVSNTQEAKQLLADHQTDMAIVFSNDFANERYSDQASVQFLVD YTDPNMAEQRISYIQQIIMDELRSQQTTEQQAIANTKLLYNPQMKSAYNFVPGIMGMLLM LICAMMTSVSIVREKERGTMEVLLVSPVKPLYIMIAKTVPYFVLSIFILISILLISKFIL AVPIEGSVITILAVSLLYIVLALALGMLISVVSQTQVVALLISGMLLIMPSTMLSGMIYP IESMPTVIQYISTIVPTRWYVSAIKKVMIMGVGVNMIYEELIIMLGMTLLFLGIALKKFK IRLS >gi|281304383|gb|ADEF01000072.1| GENE 86 97188 - 98657 315 489 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 261 456 25 221 318 125 32 9e-28 MNAIEVNHVSKQYGRVQALDDVSIKVNQGEIFGLIGPDGAGKTSLFRIMATLLLPDAGTV SIDGCDVVQEYKTIRQRVGYMPGKFSLYQDLTVEENLKFFADLFGTTVEEGYESVKAIYS QIEPFKHRKAGALSGGMKQKLALSCALIHQPRVLFLDEPTTGVDPVSRKELWEMLKTLKQ RNITIVAATPYLDEIRCCERVAFLDEGKVRAVDTAENILTQFADVFNPKGLQHQQSTADT ATSDIEEVITVSHLVKAFGDFRAVDDISFSVRRGEIFGFLGANGAGKTTAMHMLTGLNKP TSGTGTVAGYDIRKQSEEIKKHIGYMSQRFSLYEDMTVAQNIKLFGGIYGMPPQLIERKL DDLLQRLNFTAHRNSLVASLPLGWKQKIAFSVSIFHEPEVVFLDEPTGGVDPATRRQFWE LIYDASARGITVFVTTHYMDEAEYCDRISIMVDGKIRAMGTPKELKQTYQLESMDEVFTL LAREATRGE >gi|281304383|gb|ADEF01000072.1| GENE 87 98663 - 99556 709 297 aa, chain - ## HITS:1 COG:alr5293 KEGG:ns NR:ns ## COG: alr5293 COG0845 # Protein_GI_number: 17232785 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Nostoc sp. PCC 7120 # 36 264 107 343 471 75 25.0 1e-13 MKKIGLTLISIVALLSGCSSNEHPYDATGIFEATEIIVSAEQNGKLLFLNVQEGTMVEEN QQVGLIDTVQLALKARQVGATTASIANQKPNVNKQIAALQQQLQTAEKEEKRFEELVNSG AANRKQLDDATSAVNVLRRQIEAQRTALHSDRRALNSQMNANDIQKRQILDQLAKCHITS PISGIVLEKYAEQGEFASIGKPLFKVADMNNVILRAYVTNQQLQHVKIGQQVQVFSDYGN EQRETYQGKVVWISPRSEFTPKTILTDDERADQVYAVKVAVKNDGRIKIGMYGGMKL >gi|281304383|gb|ADEF01000072.1| GENE 88 99558 - 100805 968 415 aa, chain - ## HITS:1 COG:no KEGG:BT_0560 NR:ns ## KEGG: BT_0560 # Name: not_defined # Def: outer membrane efflux protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 19 415 9 409 409 275 39.0 3e-72 MKRKILVFILSILISPCLAQLDIDQCHDMARQQYPLIKQYDLLEKSEAYTLSNAMKAFLP EVKFCFGANGFTNPTNSSPKTDAMGMGDMKNYLLNGSIQISELIYDGGAISAQRKLIKAQ AEADKKQLDVRLYEINQRVDQLYFGILMIDEQSKLLKLLQNDLTLTLNTVQSLMNGGLAN QSDVDAVKVEQLRAVQQESSLRTSRKSYIQMLGLFIGKALDEKTTLDKPTPLPLSKPQGV LRPELSYFAAQQNLLDTQRKSLTARLLPQLSAFAMGMYHNKVLDMMKPAMLAGGITLSWK ISPFYTRKNDLRSIETKKSMINQERETFLFNIHLQNEKEQSVVEDLREKLKQDDEIIRLR ENIHNVSVTKVQNGIQTINEMLRDVNAVNEARQQKSIHEIQLLEAMYQLKNINNN >gi|281304383|gb|ADEF01000072.1| GENE 89 100963 - 101871 523 302 aa, chain + ## HITS:1 COG:PA4120 KEGG:ns NR:ns ## COG: PA4120 COG2207 # Protein_GI_number: 15599315 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Pseudomonas aeruginosa # 199 298 194 293 303 64 31.0 3e-10 MKLKQPHHISFDNFEDILKNHVDSSSQPPYTGRTFAMVKNVIPALKKSGFANNLLQFSDI RLGCIKEGEIEGIINLRHYHLTKGNIVCLTPNTILELTKVSPNFNLMGLTLNPEQLAIWH KESLPTFLINQMSEIVLKPNSEDLEIFFQLFNLLWNTAHRYGDDCKMVPDLMSCIFHHVQ YIISTYSKDNNRTEKREKKIFQTFILLVNQSNGMKRKLSYYASCMNLTQRYLGTVVKQVS GITAKEWIDRSTIQRIKVMLRHSDKQIAQISYELGFPNESFFSKYFKRITGTTPKTYRDE SV >gi|281304383|gb|ADEF01000072.1| GENE 90 101951 - 102469 186 172 aa, chain - ## HITS:1 COG:no KEGG:PRU_0165 NR:ns ## KEGG: PRU_0165 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 2 172 1 177 180 98 35.0 7e-20 MMNKLLVRPQPTFPEAVKEGCQRIFDFTGRTRRSSFWWFMLAYTVCYFFLTNVWKAFFPL MLAAIFDLGMMFFALAVTVRRLQDHGSSKWWAIVNYLSITIYTLYIYGSGIGEALVNVNS SATHLANVYQDPVFMTTLSVAFITALITFVLCLLDSQPKTNKYGASPKYFIE >gi|281304383|gb|ADEF01000072.1| GENE 91 102498 - 103178 669 226 aa, chain - ## HITS:1 COG:BH2479 KEGG:ns NR:ns ## COG: BH2479 COG0336 # Protein_GI_number: 15615042 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Bacillus halodurans # 1 224 1 225 246 238 50.0 5e-63 MRIDIITILPEMLEGFVNESILARAQKKGLAEICLHQLRDYTTDKWRRVDDYPYGGFAGM VMQCEPIDRCISALKAERDYDEVIFTSPDGEKFTQSVANDLSLKGNIIILCGHYKGIDQR IRDHLITREISIGDYVLTGGELAAAVMTDTIVRLIPGVIGDEQSALSDSFQDSMLSAPIY TRPADYKGWKVPEVLLSGNEAVIKSWEMEQALERTKRLRPDLLENT >gi|281304383|gb|ADEF01000072.1| GENE 92 103352 - 104101 780 249 aa, chain + ## HITS:1 COG:no KEGG:BF3580 NR:ns ## KEGG: BF3580 # Name: not_defined # Def: hypothetical protein # Organism: B.fragilis # Pathway: not_defined # 6 248 8 233 235 204 50.0 3e-51 MKKNCLTTLLLTGFSLLATAQNIQLHYDWGQQLYNDLSSRPAATATIEMFKPDKWGSTYM FTDLDLQSDGMAGAYWEISREFNISHNKQWAIHTEYNGGLSSGRANNSYFASRFQHAALL GGAWNWHNGNFSRTFSVQLLYKYFFKNNHLGQASINSFQLTEVWGMNLAKGLLTFSGFCD VWYHPNVNGKFIFLSEPQLWLNLNTLKGWNDINLSIGGEVELSNNFVWNAKGQNNKFYAI PTLAAKWTF >gi|281304383|gb|ADEF01000072.1| GENE 93 104125 - 106092 1887 655 aa, chain - ## HITS:1 COG:FN1717 KEGG:ns NR:ns ## COG: FN1717 COG0272 # Protein_GI_number: 19705038 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Fusobacterium nucleatum # 5 652 29 690 696 283 32.0 6e-76 MDIQQRMRKLVDKLNLASDNYYGGKPELMTDYEWDALFDELKQLEMSSGVVLPDSPTNRV SDGEMNGKKEAHEFPALSLAKTKQPADLVKWAEGKPVWLSWKLDGLTLVATYDDGRLSKV VTRGNGHIGTNITHLAKAIGGMPATIPFQGHTVIRGEAVISYADFEVFNLESDDAYANPR NLASGSLTLKDVKEVERRHIQWIPFTLVFVEQEIKTWGEQMDWLEQQGFHPVERERINEP SLPVVEQVIERWTEKVTQKRNPFPVDGLVVVFDDISFAATGSVTGHHATRAGLAFKWQDE AATTTLRHIEWSCAASTISPVAVFAPVELEGTTVQRASLCNISECKRLGIGGPGSTLSVI KANKIIPKVIRVIQSVGTFDIPKSCPVCHHEAVVRESAVSGTLTLHCTNEACPAKQIKKF DRFVSKAGMNIDGISEQTLDKFINLGWIETYADIYRLSAHAAELASLEGFGEKSMRNIMQ SIEQSRTVEAHHFLYALSIPLCGVDVCKRLLEAYPLAELISVATTATSLDAFAHIPGIGP EKSASLVTWFQGEANQRIVNDLLSEVQIEEPSLQPQGARCQGMTFVITGDVHHYKNRAEL KSYIESQGGKVTGSVSKSTTYLINNDVNSTSGKNKKAKDLGISIISEDEFVERYG >gi|281304383|gb|ADEF01000072.1| GENE 94 106249 - 106914 448 221 aa, chain + ## HITS:1 COG:BH1019 KEGG:ns NR:ns ## COG: BH1019 COG3382 # Protein_GI_number: 15613582 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 48 182 51 184 224 89 38.0 4e-18 MEIIVSKEIEQVCPDFVGACVEATVKNSAYSEDLWQEIHHKAQLYKDTLNTESLKEMSGI QATRKVYRRCGKDPSRYRPAAEALIRRILQDKPLYQINTLVDLINLASIAYGYSIGGFDA DQFKGDTLTLGIGREGEPYEGIGRGAINIAGLPVYRDALGGVGTPTSDHERTKITLSTTH LIVLINGYDGNEEQVRANATYIQELLKRFSLSSDSSYYLYK >gi|281304383|gb|ADEF01000072.1| GENE 95 107102 - 109069 1710 655 aa, chain - ## HITS:1 COG:DR2081 KEGG:ns NR:ns ## COG: DR2081 COG0441 # Protein_GI_number: 15807075 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Deinococcus radiodurans # 4 637 3 641 649 629 49.0 1e-180 MVKITFPDGSVREYEQGVTGLQIAESISPALARNVVSCGVNGETVELNRPINNDATIALY KFEDEEGKHTFWHTSAHLLAEALQELYPGIQFGFGPAIENGFFYDVMPKEGTTISETDFP KIEAKMMELAKKNEPVVRRNISKADALKEFQEDGQDYKCEHIDQDLEDGTISTYTQGHFT DLCRGPHLLSTGLIKAVKITSVAGAFWRGDAKREQMTRIYGITFPKKKMLDEYLTMLEEA KKRDHRKIGKEMELFMFSERVGKGLPIWLPKGTELRLRLQDMLRNIQRRYGYQEVITPHI GSKNLYVTSGHYAHYGKDSFQPIHTPEEDEEYMLKPMNCPHHCEVFAYKPRSYKDLPLRI AEFGTVYRYEKSGELHGLTRVRSFTQDDAHIFCRPDQVKNEFLRVMDIIQAVFKIFNFDN FEAQISLRDPKDKEKYIGSDEVWAESEQAIIDACKEKGLDAKVEYGEAAFYGPKLDFMVK DAIGRRWQLGTIQVDYNLPQRFKLEYTDEDNSKRTPVMVHRAPFGSLERFTAVLIEHTAG HFPLWLTPDQVAILPISEKYNAYARQVAKQFAAQQVRATIDDRNEKIGRKIRDNELKRVP YMVIVGEKEAADGLVSMRERGGGEQATLRVDEFIARINNEVAQMLKATDIHPDDE >gi|281304383|gb|ADEF01000072.1| GENE 96 109162 - 111132 1800 656 aa, chain - ## HITS:1 COG:all0889 KEGG:ns NR:ns ## COG: all0889 COG0457 # Protein_GI_number: 17228384 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Nostoc sp. PCC 7120 # 37 606 51 584 605 134 24.0 5e-31 MYRIKVLIFLACLSLAAKAQYNVDKLLRNGQVALHYEDYVLSIQYFNQIISLKPYLYEPW QYRAVAKFYLDDFTGAESDISKAIELNPYIHQFFDLRAITRIKQERFEDAINDYNHAIRL QPQQQNYWLNRAICLMNDKQYAKAQLQTDTIIHKWSQNANAYTLKAEIYLHQKDTTSAAK WLDKSLKVDPYDGSTWTMRAYISLARQQWKEADKELSQAIHLKPNQANNYVNRALARLNY NNLRGAMSDYDMALDLNPQDFLAHYNRGLLRMQLGDDNRAIEDFDFVIKLEPKNVMAIFN RALLLDRTGNLRAAIRDYSAVIEQFPNFWTGLSYRAHCYRRLGMIAKAELDEFRIFKAQM NKHVGVQKRWSKNKLKEMRKRSEIDPEKYNQIVVADENTVEHEYDSEYRGQIQHRKVEVE LMPMYEVSYLPYQNGISSYQAFYKELEDFNLQHHPQHKLMLTCRPKQLTAEQSKMYFANI DQLSAQIQDAKNIKSVKSLLFQRAVAYTVTQNYDAAIQDLTVCISEDSTSAVTFWQRAVC QFMMNDFNASKGVDTQLKAAKTLDDLNHAIKLDPQNAYLYYNRANLYATRNDDQLAIKDY TKAIALDNRLAEAYYNLGIVHMKKGNRAAGMANLSKAGELGIYDAYSLMKKNRASK >gi|281304383|gb|ADEF01000072.1| GENE 97 111138 - 111701 543 187 aa, chain - ## HITS:1 COG:TM1661 KEGG:ns NR:ns ## COG: TM1661 COG0242 # Protein_GI_number: 15644409 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Thermotoga maritima # 5 168 4 155 164 131 45.0 8e-31 MILPIYIYGQPVLRKVAQDITPAYENLQQLIADMFETMDASDGVGLAAPQIGKSIRVVVI DLNVLSDELPEYKDFRRAYINPHIIEIDEDSPVSTMEEGCLSIPGIHESVTRHTRIRVQY MDSDFQPHDEWVEGYLARVMQHEFDHLEGKMFVDRVSPFRKQLIKNKLKAMTQGKYECHY RTKPVRK >gi|281304383|gb|ADEF01000072.1| GENE 98 111740 - 112153 317 137 aa, chain - ## HITS:1 COG:CAC1680 KEGG:ns NR:ns ## COG: CAC1680 COG0816 # Protein_GI_number: 15894957 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Clostridium acetobutylicum # 1 134 1 134 135 78 37.0 3e-15 MRILSIDYGKKRTGIAVTDSLQIIANGLATVATSALFDFLKTYVAQEEVERIVIGKPMQT NGKPSENFARVQQFVNRWRKAMPQIPIEFYDERFTSVLAHQAILQSGIGKKARQNKALVD EVSATIILQSYMESRRK >gi|281304383|gb|ADEF01000072.1| GENE 99 112234 - 112719 453 161 aa, chain - ## HITS:1 COG:no KEGG:PRU_0589 NR:ns ## KEGG: PRU_0589 # Name: not_defined # Def: sporulation-like repeat protein # Organism: P.ruminicola # Pathway: not_defined # 15 159 2 149 152 142 57.0 3e-33 MMKKRIVLCAGLCAALALTGCKSSESAYKKMYERAQAQEQAKTETEAEVPTVTPLTPAPV TETTVQDNVDNATFRTEDVTVVSGNGLSAFSVVVGSFGLKANAESLQRTLNAAGYAAQIA YNAGRNMYRVVASTHADKASAVRSRNQFRQQYPDAWLLYKK >gi|281304383|gb|ADEF01000072.1| GENE 100 112983 - 113201 385 72 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282877694|ref|ZP_06286509.1| ## NR: gi|282877694|ref|ZP_06286509.1| conserved hypothetical protein [Prevotella buccalis ATCC 35310] # 1 72 1 72 72 99 76.0 5e-20 MRTVSCIGAFLGGVLVGGLVGLLVAPQKGQDTRNKISDTIDDFCKKHDLKLSKKDVDDLV DDIKDAAADIVD >gi|281304383|gb|ADEF01000072.1| GENE 101 113212 - 113562 391 116 aa, chain + ## HITS:1 COG:no KEGG:PRU_0587 NR:ns ## KEGG: PRU_0587 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 114 1 114 116 93 56.0 2e-18 MFSNDKNVETISQLVDVCKHYIGLQTEYVKLDVIEKVVRLITVLTLALSLTIVLVLALIY VSFAAAYALEPHVGLPFAFLIIAGCYLFTFVLFFLFRKQWIQRPIVKFLASLLMEN >gi|281304383|gb|ADEF01000072.1| GENE 102 113508 - 113834 176 108 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282881724|ref|ZP_06290387.1| ## NR: gi|282881724|ref|ZP_06290387.1| conserved hypothetical protein [Prevotella timonensis CRIS 5C-B1] # 56 108 1 53 53 105 100.0 1e-21 MDSAANCQVLGKFIDGELVMTKNNYDTPQTKYTSLSEIRERKQALLDNIRNDDSQMKALW DQLFGTSPSSLTTNLPSKRFSGLLSTGAGVFDGIVLGWKLYRKFKKRR >gi|281304383|gb|ADEF01000072.1| GENE 103 113690 - 113974 131 94 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MERNDFVLWFLRTFCQYSCYKKSTVGADKKKTTFYQSYLFLRSEERVYLLFLNFLYSFQP NTIPSKTPAPVLNNPENRLDGKLVVNEDGDVPNS >gi|281304383|gb|ADEF01000072.1| GENE 104 114304 - 114531 99 75 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGSLVVVFLFLSYHFTKKRSLKIFKIEKINRQTTCKNGLILTNKTSIEAKTLSLRSWKHV LEVLFTCFSSLKACK >gi|281304383|gb|ADEF01000072.1| GENE 105 114758 - 115171 546 137 aa, chain - ## HITS:1 COG:MA1602 KEGG:ns NR:ns ## COG: MA1602 COG0494 # Protein_GI_number: 20090460 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Methanosarcina acetivorans str.C2A # 11 135 6 132 132 102 39.0 3e-22 MNHMKTEVTRVVAAVVQRGKRYLCMQRGRSQYSYLSEHWEFPGGKVEEGESDHEALVREI KEEMDWDVFVGRKIGEVTHDYPDFKVSITAYLCKGGDEDYKLLEHIDDKWLPLDQLKSLN WAEADRVLIERFLSEKE >gi|281304383|gb|ADEF01000072.1| GENE 106 115317 - 116150 1012 277 aa, chain + ## HITS:1 COG:no KEGG:PRU_0313 NR:ns ## KEGG: PRU_0313 # Name: not_defined # Def: putative pantothenate kinase # Organism: P.ruminicola # Pathway: Pantothenate and CoA biosynthesis [PATH:pru00770]; Metabolic pathways [PATH:pru01100] # 1 271 1 270 275 334 66.0 2e-90 MAIVIGIDVGISTTKIVGINDDGTVVAPIRIKATDPVTSLYGAFGKYLHDNNIQLNDVEQ VMLTGVGAAYVDSSVYGLPTAKAEEFICNGLGARFETDLEDMIVVSMGTGTSLIQCKGND IRHIGGMGIGGGTLIGLSRIMLKTDDIRQISSLAMRGDASNIDVRIGDISPEPLPNLPKT ATASLFGNAKSNATREDIALGIITMVLQTIGSSTILASLGSGIKDYVLIGNLTLLPQCKM VFSGLEKMYGVNFINPKYSEFCTAIGAALFYLNEKEK >gi|281304383|gb|ADEF01000072.1| GENE 107 116259 - 117104 847 281 aa, chain - ## HITS:1 COG:CAC2424 KEGG:ns NR:ns ## COG: CAC2424 COG4667 # Protein_GI_number: 15895690 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha-beta hydrolase superfamily # Organism: Clostridium acetobutylicum # 6 269 3 266 283 223 43.0 3e-58 MQIDRNTGLVLEGGGMRGVFTCGVLDAFMKHDLYFRYVVAVSAGACNGMSYISRQPRRAR FSNIDLLSKYDYIGLRHLVTQGCIFDQKLLYDKFPNEYVPFDFDTYFSSPSTFEMVTTNC LTGLPAYLTEKQNKQRALDIVRASSSLPFVSKIVEIDQIPMLDGGITDSIPVIRSMATGH HKNVVILTRQKGYRSTERDRKIPHFIYKKYPRLRVALSRRVAAYNEQLELVDQLEAAGQI VCIRPQDPVKVGRMEKDTAKLERLYQEGYMLGDDFCQSQVS >gi|281304383|gb|ADEF01000072.1| GENE 108 117322 - 118731 1142 469 aa, chain + ## HITS:1 COG:FN1949 KEGG:ns NR:ns ## COG: FN1949 COG0006 # Protein_GI_number: 19705251 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Fusobacterium nucleatum # 1 463 1 457 462 389 42.0 1e-108 MFDKQTYIRRRTQLKKEVGHGIIILFGNNNSPANGPYNGYHPFRQDSSFLYYFGQNRDGL VGVIDIDNDQEKLIGDDIDIEDIVWFGSVDSVKDMAAQVGIEQTAPMKELATICKRAQEK QQKIHFLPPYRHDIKLQIYDLLGIHPSQQKESASLDLIKAVVKMRSTKEPQEIEELERAA KIGYRMHTTAMRLTKPGVTEKFVGGQVDGIANSYGAMVSFPTIFTQHGEIMHGSPSLNLL EAGRLALCDAGAETVNNYCSDNTRTYPVSGKFTQRQLEIYSIVEACHDHALEVAKPGVKY MDVHFSVCKLMTERLKELGLMKGDTEEAVRAGAHAMFLPHGLGHMMGMDVHDMEALGQIY VGFDDETRPNLEQFGTNALRMGRRLEEGFVVTDEPGIYFIPALIDEWRASGHCKEFLNFE LLETYKDFGGIRIEDDLLITKDGCRFIGEQRIPYHPKDVEAFMANNSTK >gi|281304383|gb|ADEF01000072.1| GENE 109 118755 - 119957 1130 400 aa, chain + ## HITS:1 COG:no KEGG:PRU_0556 NR:ns ## KEGG: PRU_0556 # Name: not_defined # Def: C1 family peptidase (EC:3.4.-.-) # Organism: P.ruminicola # Pathway: not_defined # 1 400 1 401 401 523 63.0 1e-147 MKKILMFALLAIMATGAQAAKKKTAPKNNQPVFTVVKQNKITSIKDQNRSGTCWAYSTLS FLESEILKKTGKTYNLSEMFVAHKTYEDRAEKAIRMHGDVSFAQGGSTYDPIYCWQRYGM VPETAMPLPGTMTGDSLANFSEFFAVLTPYVEAIAKSKQKKLSPAWKKGMMGILDAYLGK TPDTFTYEGKTYTPQSFAASLGLDMNDYVHFTSYTHHPFWTQFAVEVQDNWRWPLSWNVP IEEICNIIDNAINNGYTVAWGGDVSEDGFTRNGLGIAYDLKKARDLSGTDADRWVKMSNS SKKAKADSLGVNAPEVVPTQEMRQKAFDNWETTDDHGMHIFGIAKDQNGKEYYMVKNSWG ESGKYKGIWYMTKAFVAYKTMDFMVNKNAVPANIRKKLNI >gi|281304383|gb|ADEF01000072.1| GENE 110 120277 - 121938 1163 553 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282881730|ref|ZP_06290393.1| ## NR: gi|282881730|ref|ZP_06290393.1| putative lipoprotein [Prevotella timonensis CRIS 5C-B1] # 1 553 1 553 553 1076 100.0 0 MKTKLFVSFTAFVAASVLMCSCSNEESADSNNNSNSNGQLTAFTGGIVTEAPMEREQIGT PEISTEVPGFLTRITMKRQGIGEKGTFLWEPKDVIYVEDDNNQLRKGKSTITDAIARTTF LVDGSYTKKEYKVYYYGTKSDAIEKKKVVIANNQTLEAFNNTKHFGASGDCGVAQAKKTT DAGKSGYSFELAHKASYLCFLPYIPTQEERNAYKIKSIEIWSGSKIAGTYSNIAGTYELT QDGLSNGTNETNKITLKVGTDGLMLANKATGAKSIENSLYAVIAPGTYTLKVDYTVFDTK TNEEKKITKYYKEHNFGANKICDIPVCLGSTDFYSGYNYYMWDAVKNYWSGHEWDTSDIW QPTETDIYPPFYPQSKDDAGDRWYHEGVGPLEASNTLFKKLPNANEMAWYILKGDAHWDN TTQWTAFGKKFKGGIWLKKLSVIAKDAGKTLADLKKADPDGHDLRTNNVDQRPYYSALDG KLTDSEINNYFFLPALGNYHNGSLEAFASWGFYWSSSVPYDDRKTAYSLFFSSDFVMLER TDRAHGCVAQPFK >gi|281304383|gb|ADEF01000072.1| GENE 111 121982 - 122161 247 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKTEITAARRKSAYICPKIVCIAVEYSLCAASPIGGGAGTADYDGLLEEDEQKEIPMN >gi|281304383|gb|ADEF01000072.1| GENE 112 122975 - 124711 1743 578 aa, chain + ## HITS:1 COG:BH1240_1 KEGG:ns NR:ns ## COG: BH1240_1 COG0608 # Protein_GI_number: 15613803 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Bacillus halodurans # 4 530 7 523 562 370 37.0 1e-102 MHFKWNYVPPTSEETKAAKELGDKLNINTILALLLIRRGITTESAAKRFFRPQLADLINP FLMKDMDVAVDRLNDAMGRKERILVYGDYDVDGCTSVALVYKFLQQFYSNIDYYIPDRYD EGYGVSKKSLEYARETGVKLIIILDCGIKATDEIAYAKSLGIDFIICDHHVPDEVMPPAV AILNPKRPDDTYPFKHLSGCGVGFKLMQAFAKNNNIPFSRLIPLLDFCAVSISADIVPVV DENRILAFHGLKQLNQNPSVGLKAIIDICNLGNRDISMSDIVFKIGPRINASGRMENGKE SVDLLVEKDIASAIRQAKHIDEYNEQRKDIDKQMTEEANLIVSKLENQKHHSSIVLYDEN WKKGVIGIVASRLTEIYFRPTVVLTRDGEFATGSARSVTGFDVYAAIKSCRDLLVNFGGH TYAAGLTLRWDDIKTFRTRFQKYVDEHILPEQTEPIIDIDAIIDFKDITKRLHQELKKFS PFGPGNPKPMFSTIGVYDYGTSKVVGREQEHIKLELVDSKSSNVVNGIAFGQSASARYIK SKRSFDIAYTLEDNVFKRNAVQLQIEDIRPTEGEDYQT >gi|281304383|gb|ADEF01000072.1| GENE 113 124716 - 126632 1440 638 aa, chain + ## HITS:1 COG:alr0205 KEGG:ns NR:ns ## COG: alr0205 COG0514 # Protein_GI_number: 17227701 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Nostoc sp. PCC 7120 # 11 346 11 351 718 294 44.0 4e-79 MPVHDKYLSILQQYWGYKDFRGIQREIIESIGQQRDTLGLMPTGGGKSITFQVPALAQPG ICLVITPLIALMKDQVQHLKEKGITAAAIFSGMTRREILKTLDNCIFGDIKLLYISPERI GSELFLMKLRRMNVSFITVDEAHCISQWGYDFRPAYLNIADIRKEKPAAPLLALTATATP EVVEDIQQQLGFKEKNVFQMSFERSNLTYVVRTAQDKYQEILHILQSLPGCAIIYVRSRK RTKEVATLLNACDIPATYYHAGLEHSVKDERQRAWQTDQIRVMVATNAFGMGIDKPDVRV VIHIDCPDSLEAYFQEAGRAGRDGQRSYAVLLHNTSDKHKLNKRIEDNFPEKDYIKDVYQ HLAYYFEIGLGSGSGHTFTFDIGKFCAVFHYFPIPVNSALLILSRAGYLEYDTDPDSNAR VMFLLDRNELYKLNQVSPLQEKVITSLLRTYGGLFTDYVYIDEALLAQQAGITREQLYLI LKGLTQRRILHFIPQRKMPFITYAKDREAIENMVIPKAVYEERKEQFSKRIKSVIRYAEN NEVCRSKQLLRYFGDVQAKDCLRCDVCLDQGLQRNSTITTNEIKQTILHGLEDKERHHIT ELDKLAFPEKLLDQVLEQLVAEEIIVLEGSYIYLANKG >gi|281304383|gb|ADEF01000072.1| GENE 114 126761 - 127513 595 250 aa, chain - ## HITS:1 COG:YPO2295 KEGG:ns NR:ns ## COG: YPO2295 COG1011 # Protein_GI_number: 16122519 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Yersinia pestis # 113 242 93 222 224 68 28.0 9e-12 MITDAMPPIHGLLFDFGGTIDTNGQHWGKMLWQMYQKIGVSVCEDDFRKAYVYGERMLEK SPLVKPTDTLRRTIEVKLRLELEQLCMMGVWDVDETELLHAQKLLLSEIYQHVTQIIEQH RKMLQYLKERFTMGLITNFYGNMNTVLQEFSLGDIFETVIESAVVNIRKPDVRIFKLALD ALQLPAEEVLVIGDSFYKDVEPASKLGCQTAWLKGEGWIEKQYDEALPTYILTTLSEIVS IVDHASTTKG >gi|281304383|gb|ADEF01000072.1| GENE 115 127510 - 128457 664 315 aa, chain - ## HITS:1 COG:no KEGG:PRU_1800 NR:ns ## KEGG: PRU_1800 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 1 299 1 299 299 389 60.0 1e-106 MGRFKELLKASMKSKDTEEWLDVHFTRPIGLVFALLWKRLGVHPNAVTILSIFLGIGAAY CFYFVDVWHNVCGVLLLMFANFCDSTDGQLARLTGKHTFIGRMLDGFASGLWFVGIYVAL ALRMQHQLMPGTTVPWGAGIWTLALVAGVLCHTTQSSLGDYYRQIHLYFLKGEGGSELGH SKQQYLIYKHLDKGDWLKRLFYLNYTSYCRSQERRTPAFQKFIQRFKSHPDNMVRQQFLE GSRPLMPYTNILTFNTRAICLYVTCLLNCPWLYFIFEITILQLIYIYMHQRHEKLCREMI SLLSKTTTTQQTNQS >gi|281304383|gb|ADEF01000072.1| GENE 116 128433 - 129203 688 256 aa, chain - ## HITS:1 COG:no KEGG:PRU_1801 NR:ns ## KEGG: PRU_1801 # Name: not_defined # Def: hypothetical protein # Organism: P.ruminicola # Pathway: not_defined # 58 246 1 198 204 172 43.0 8e-42 MKHQHIIAIRRDYIYSLEAEQKDRDILVAVIQQLGGDIRMVDELKLTAQDEADIYLSMGR HPATLALLRACEKRGALVINCPDAVELCARKKVAQVMRENHIPMPPQRGKHGYWLKRGDS KAQLDSDVVYCKDENELAARKEEWRQRGICSSIESAHVEGDLIKFYGIGQHFFKWFYRSV KTEGYDFDANLLQAEAVRLARIIGIDVYGGDCVVNREGEISIIDFNDWPSFAACKEEAAQ AIAQLVKQKWEDLRNC >gi|281304383|gb|ADEF01000072.1| GENE 117 129228 - 129992 592 254 aa, chain - ## HITS:1 COG:no KEGG:PRU_1802 NR:ns ## KEGG: PRU_1802 # Name: not_defined # Def: nucleotidyl transferase family protein # Organism: P.ruminicola # Pathway: not_defined # 1 238 1 234 238 265 56.0 1e-69 MKYAIIAAGQGSRLSNEGVSLPKPLVKVGNECLIDRLLRIFVANHADEIIVICNEEMTNV QTHLQAIQQKGLNGEPIALKIVIRSTPSSMHSLAALRPLLKDAPFCLTTVDAIFEEDAFM TYVQGFKKALQQGVDAYMGVTKFVDDEKPLFVETDESMRVLGFHDEGSVRYKYVSAGIYG LHPHIFDILQRCIQRGEHRMRNFQRALIAEQCTVMAHDMGQVLDIDHLSDVAKAEAFLRK TTSQTKDKYQELDR >gi|281304383|gb|ADEF01000072.1| GENE 118 130132 - 130833 457 233 aa, chain - ## HITS:1 COG:no KEGG:PRU_1803 NR:ns ## KEGG: PRU_1803 # Name: not_defined # Def: putative lipoprotein # Organism: P.ruminicola # Pathway: not_defined # 4 230 2 256 258 135 31.0 2e-30 MKRKIYCTLAVFTLLLFASCVCTKSDRKSERKITQSSKIKYFKNVNIEGCYNVYFEQADS ASIRFEGSEKAIQQLRITCDGNTLDIKRKEKSKWLNFCNQEDVDIYITSPDLVSVYLKGT GEFEVHKRLDTDTLSVSLMGTGDIDIKDLICDKVKVNLKGTGDINIKNVITSQAFISLLG TGDIKVHFEKCQWAHCSLQGTGDIDVSGTVNTYKEKIQGTGSIDTDDLHILSK >gi|281304383|gb|ADEF01000072.1| GENE 119 130997 - 133405 1595 802 aa, chain - ## HITS:1 COG:CC0447 KEGG:ns NR:ns ## COG: CC0447 COG3525 # Protein_GI_number: 16124702 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetyl-beta-hexosaminidase # Organism: Caulobacter vibrioides # 30 629 30 586 757 392 38.0 1e-108 MKKTILMSVCLWLLAAMGYAQSAPNMANYSVIPLPRQINMVKSKGFVLTPQTRIVYPACD SVLMKDAELLASYIFELTGLRLKVATNAIDAHNIELCTGLSHPNKEAYSMRVSAQKITIQ GASAAGTFYGIQTLRKAIPLKCNMDKGRCEKEDEKSKKCCAATEQKDLLPYSSGIVFPAG EITDYPQYAYRGAMLDVARHFFGVDAVKTFIDMLALHNINNFHWHLTDDQGWRIEIKKYP LLTQKAAFRPETTIGHTDKKDGKPHGGYYTQQQIKEIVQYAAERHINIVPEIDMPGHMVA ALSAYPKLGCTGGPYSVRTEWGIAEEVLCAGNDSTLQFAKDVIAEVMRLFPSPYINIGGD ECPKKSWQNCAKCQAKIQSLGLVTDAQHTKEQRLQSYFMTEMANFITQHGRKVCGWDEIL EGGVAPNATVLSWRGIQGAEQAARLGHDAIMCPTSNMYFDYYQTEDRANEPVAFNAYLPI EKVYAFQPVPKSLTPQQAKHIIGVQANLWTEQVKTLSHIEYMMLPRLAAACEVQWSSEQE KDYGSFLQRLPHMLQLYKACGYRYAEHYFTVSTVLTPSPKGQAMEVALGAPGKAKIYYTT DGSEPNEQSKPYKKPFCLKQSATIKAIAYSDSLHSDVTKEQVIVHKAMMKPVRFCTPPNH AYQGNSPQELVNGLLGNTSFHSGRWVGFVGNDMDIIIDLQRRMPIKCVSVRTLTEQSNWI FPDRGVSLLVSDDGEHFKEVFADTKQSLPHVVPPSVNTQKITLENVKARYLRIKVLSEHS MPQWHYGYGQTAFLFVDEVIVE >gi|281304383|gb|ADEF01000072.1| GENE 120 133329 - 133613 61 94 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFGALCAYPMAASNHRHTLIKIVFFISKDCSSLLYCKDCASRRQRKFTFFVEAKPTFCKD NENKSQTNKLASAFARPHPYQQLATRNHDVSGGE >gi|281304383|gb|ADEF01000072.1| GENE 121 133668 - 134780 1240 370 aa, chain - ## HITS:1 COG:no KEGG:Ctha_2118 NR:ns ## KEGG: Ctha_2118 # Name: not_defined # Def: hypothetical protein # Organism: C.thalassium # Pathway: not_defined # 2 367 9 368 371 114 30.0 7e-24 MKKYLLSLAVLLMGVSLFTSCENDDDEVNPQDLKKVTHAAYVVNAGQQATGSTGTLTRVD METWTTAQNVFSQVNGRNLGVTVNDAIIYGSKMYIVVDGEGSVEVVDKNTLHAIKRIELQ KLLRDDKGKSPRHAVAANGCVYVTTFGGVVAAIDTMSLGLKKTYQAGSFPEGIAYHNGKL YVCNSDYGKGKGNLSVIDVASGDTTMIVNEHLTNPVAAKFIGSDLYVLHAGSYDKNWNQT GAGVMKVVGKQVTKVSDATLMAVNDKRGAEKIYTINAPYTNPATPVTYNVYNVRTGKTAT FTTTKVDAPSAIAVDPVTGYVYIMSYKLNPETHYADYGGAGYVNVYNASGKLLHTLAIGV GATGMVFDYK >gi|281304383|gb|ADEF01000072.1| GENE 122 134791 - 136770 1739 659 aa, chain - ## HITS:1 COG:btuB KEGG:ns NR:ns ## COG: btuB COG4206 # Protein_GI_number: 16131804 # Func_class: H Coenzyme transport and metabolism # Function: Outer membrane cobalamin receptor protein # Organism: Escherichia coli K12 # 1 659 2 614 614 73 22.0 1e-12 MPRVVIILLCSVAFLHATAQTDSLTHRVHTLDTVIVSEGRLMRSLQSTSPEHVLQHSDLQ RMGVSTMADALLRLPGITLRDYGGAGGMKTVSVRGFGTQHTGVSYDGVMLSNMQTGDIDL SRYSLAHVSQLMLAIGDNADIFIPARQATTPAVLSIETMGGSRADRRPHFDAQFKVGSFG YLHPSLRYEQNVSQPLRFSVIADYVSANNNYPYTLRNGTLKTQQTRSNSRMQGGHAEGNV AWMPQTNQLLKVKAYYYDNHQQLPGVVRYYANESSEQLDNRNYFVQAQYLWQVNRFFRMK WLGKWDESNTSYRESRAHSGPMDADYHQDEAYTSLCLLFSPDKHWALSYAADYAFHQLHS SLTNDIQPYRHSVWQSLTAKYQLQRLTAQARLLGSLYHNGARAGTAADNQKRLSPSLSLS WAPFPHHPLYVRASYKNIFRMPTFNENYFFRYGSKDLKPEQTDQLNVGVTVDKSLPHVQL WATLDGYLNHVTDKIVAVPYNLFVWRTVNVGKVRIVGIDAMLRTTWRANAQHTLMLMANY SYQRAANRTLASSPYYNHQIAYVPLHAGGCSLNAQNRWLNLTLQWVGVGGKWLNNQHHDG SYLKGYQEWSLTAYRTFRVCEQPLQVRADIKNIFNQQYQIVAGYPMPGIHAEITMNYQF >gi|281304383|gb|ADEF01000072.1| GENE 123 137933 - 138721 519 262 aa, chain - ## HITS:1 COG:CAC3591 KEGG:ns NR:ns ## COG: CAC3591 COG3884 # Protein_GI_number: 15896825 # Func_class: I Lipid transport and metabolism # Function: Acyl-ACP thioesterase # Organism: Clostridium acetobutylicum # 17 222 15 216 248 81 26.0 1e-15 MNHLDTVGRYTFLAEPFHCDFSGRLFLSHLGNHLLNAADFHAHERGFSMTVLQPMHKTWV LSRLAIEMNEIPLAYDKFEVETWIEQTMKWFTYRNFSVLGKGGKVYGYGRSVWALIDTDT RQPTDILAFDDGRVKRSTDVKYLCPIDAVSRVKMTDNIQRWHTLVTTYSDVDMNGHINSV KYIEHLLNLWSMTFHAIHSIKRIDVAYVAEAYGGDTLHFDVETLGELTYAVRIIRQAKGQ STEQEVCRCKVQFAETLRPKKQ >gi|281304383|gb|ADEF01000072.1| GENE 124 138885 - 140033 1303 382 aa, chain - ## HITS:1 COG:no KEGG:BT_1391 NR:ns ## KEGG: BT_1391 # Name: not_defined # Def: hypothetical protein # Organism: B.thetaiotaomicron # Pathway: not_defined # 1 373 1 369 375 234 38.0 5e-60 MKRLGLLLTAAAVAASVSAQTVTESKSYDNVYIGINGGVATKSTGHSWMDNLNPNAGLRL GRYFTPVFGLTAESNAYFSNKPYESTGTAVRVLNTSLLGTVNLSNWFGGYPGEPRGFEVV GLFGYGWGHLFGNTEAYHQMNHDNLTSKAAIDFVFNLGSNKAWQFYVEPAIVWALNGDGT QPIEYNLNKSFTQLNCGFVYKFPNSNGTNNFTIAKLRDQSEIDGLNAQINSLRNDLSGKN AQLTDKDRQISDLQKALDDCNKRKAYVKPATATNLQPTVLFRQGQSVVDRSQMPNIELIA NYMKNHKSATVTIKGYASPEGPTELNQRLSENRAKNVKNLLVDKYRIAPNRLKTVGMGET NKLFKELDFNRVATFNDDTNVE >gi|281304383|gb|ADEF01000072.1| GENE 125 140327 - 141205 923 292 aa, chain - ## HITS:1 COG:SP0825 KEGG:ns NR:ns ## COG: SP0825 COG0190 # Protein_GI_number: 15900713 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Streptococcus pneumoniae TIGR4 # 2 292 3 284 285 278 50.0 1e-74 MQKIDGKATAAAIKAKIAEEVRQLVAKGGKRPHLAAVLVGHDGGSETYVRNKVLACEECG FESTLIRYEENVTEEELLKCVDKLNHDDNVDGFIVQLPLPKHINEEKIVMAVDYKKDVDG FHPINVGRMSIGLPCFISATPLGIMTLLQHYNIDTNGKKCVILGRSNIVGKPMAQLMMQK AYGNATVTVCHSQSKNIKQECREADIIIAAIGVPNFVTADMVKEGAVVIDVGTTRVPDGT RKSGFRLNGDVKFDEVAPKCSYITPVPGGVGPMTICSLMTNTLAAGKKEYYR >gi|281304383|gb|ADEF01000072.1| GENE 126 141238 - 142572 1526 444 aa, chain - ## HITS:1 COG:FN1393 KEGG:ns NR:ns ## COG: FN1393 COG0541 # Protein_GI_number: 19704725 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Fusobacterium nucleatum # 1 442 1 443 444 443 56.0 1e-124 MFENLSERLERSFKILKGEGKISEINVAETLKDVRRALLDADVNYKVAKNFTDKVKEKAL GMNVLTAVKPGQLMVKIVHDELAELMGGEAVGLQLDSKPAIILMSGLQGSGKTTFTGKLA NMLKTKQKKNPLLVACDVYRPAAIEQLKVVGEQVGVEVYSELDNKDVVAIAQQAIQQAKA KGNDVVIVDTAGRLAVDEEMMNEISQLKNAIHPDETLFVVDSMTGQDAVNTAKEFNDRLD FDGVVLTKLDGDTRGGAALSIRTVVTKPIKFVGTGEKMDAIDVFHPDRMADRILGMGDIV SLVERAQEQFDEEEAKRLQKKIQKNKFDFNDFLKQIEQIKKMGNIKDLAAMIPGVGKAIK DIDIDNDAFKGIEAIIKSMTPKERTNPEILNTSRRQRIAKGSGTNVQEVNRLIKQFDQTR KMMKMVTGNKMAGMMNRMKGMPKM