Prediction of potential genes in microbial genomes Time: Sun May 29 07:20:54 2011 Seq name: gi|224999999|gb|ACJC01000001.1| Staphylococcus epidermidis W23144 contig00001, whole genome shotgun sequence Length of sequence - 50498 bp Number of predicted genes - 54, with homology - 54 Number of transcription units - 20, operones - 12 average op.length - 3.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - TRNA 9 - 82 75.7 # Gly TCC 0 0 - TRNA 104 - 190 64.2 # Leu GAG 0 0 - Term 825 - 862 2.1 1 1 Op 1 6/0.000 - CDS 947 - 1402 288 ## COG3091 Uncharacterized protein conserved in bacteria 2 1 Op 2 1/1.000 - CDS 1395 - 3545 171 ## PROTEIN SUPPORTED gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 - Prom 3579 - 3638 8.1 - Term 3747 - 3794 7.0 3 2 Op 1 6/0.000 - CDS 3837 - 4607 850 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit 4 2 Op 2 8/0.000 - CDS 4582 - 5061 515 ## COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase) 5 2 Op 3 9/0.000 - CDS 5063 - 5389 501 ## COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) - Prom 5428 - 5487 5.8 6 2 Op 4 1/1.000 - CDS 5489 - 6490 901 ## COG2208 Serine phosphatase RsbU, regulator of sigma subunit - Term 6601 - 6639 2.1 7 3 Op 1 . - CDS 6836 - 7198 403 ## COG2337 Growth inhibitor 8 3 Op 2 . - CDS 7195 - 7365 170 ## SERP1682 hypothetical protein - Prom 7391 - 7450 4.3 9 4 Op 1 5/0.000 - CDS 7452 - 8600 1325 ## COG0787 Alanine racemase 10 4 Op 2 1/1.000 - CDS 8667 - 9020 178 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 11 4 Op 3 7/0.000 - CDS 9059 - 9577 338 ## COG3402 Uncharacterized conserved protein 12 4 Op 4 . - CDS 9564 - 11069 1124 ## COG3428 Predicted membrane protein 13 4 Op 5 . - CDS 11062 - 11541 254 ## SE1678 hypothetical protein - Prom 11592 - 11651 8.8 - Term 11743 - 11782 6.0 14 5 Op 1 2/0.000 - CDS 11795 - 13324 1921 ## COG0513 Superfamily II DNA and RNA helicases - Prom 13532 - 13591 8.3 15 5 Op 2 6/0.000 - CDS 13622 - 14977 1330 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase 16 5 Op 3 . - CDS 14989 - 16062 1240 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes + Prom 16293 - 16352 7.5 17 6 Tu 1 . + CDS 16453 - 17664 961 ## COG0772 Bacterial cell division membrane protein + Term 17669 - 17727 6.0 18 7 Op 1 . - CDS 18043 - 18252 204 ## SERP1693 hypothetical protein 19 7 Op 2 . - CDS 18259 - 18570 327 ## COG1937 Uncharacterized protein conserved in bacteria - Prom 18770 - 18829 9.5 + Prom 18610 - 18669 9.8 20 8 Tu 1 . + CDS 18726 - 20210 1221 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 20216 - 20267 7.2 + Prom 20241 - 20300 8.5 21 9 Tu 1 . + CDS 20392 - 21045 639 ## COG1418 Predicted HD superfamily hydrolase + Term 21116 - 21154 4.1 - Term 21103 - 21141 4.1 22 10 Op 1 1/1.000 - CDS 21152 - 22024 946 ## COG0706 Preprotein translocase subunit YidC - Prom 22052 - 22111 5.6 23 10 Op 2 6/0.000 - CDS 22113 - 22754 643 ## COG0352 Thiamine monophosphate synthase 24 10 Op 3 12/0.000 - CDS 22757 - 23545 916 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 25 10 Op 4 1/1.000 - CDS 23538 - 24359 918 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 26 10 Op 5 . - CDS 24352 - 25041 732 ## COG0819 Putative transcription activator - Prom 25224 - 25283 5.8 - Term 25266 - 25308 8.1 27 11 Tu 1 . - CDS 25325 - 25984 934 ## SERP1702 SceD protein - Prom 26225 - 26284 8.2 - Term 26247 - 26297 7.1 28 12 Tu 1 . - CDS 26372 - 26767 428 ## COG0629 Single-stranded DNA-binding protein - Prom 26948 - 27007 10.2 + Prom 26821 - 26880 5.3 29 13 Tu 1 . + CDS 26928 - 27398 486 ## SERP1704 YwpF protein - Term 27461 - 27512 10.1 30 14 Op 1 1/1.000 - CDS 27716 - 28153 503 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases 31 14 Op 2 2/0.000 - CDS 28187 - 29452 1497 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 29492 - 29551 7.1 32 14 Op 3 2/0.000 - CDS 29562 - 29795 147 ## COG4836 Predicted membrane protein - Prom 29876 - 29935 7.0 - Term 29881 - 29943 12.9 33 15 Op 1 42/0.000 - CDS 29944 - 30348 667 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) 34 15 Op 2 42/0.000 - CDS 30368 - 31780 1877 ## COG0055 F0F1-type ATP synthase, beta subunit 35 15 Op 3 42/0.000 - CDS 31802 - 32668 977 ## COG0224 F0F1-type ATP synthase, gamma subunit - Prom 32691 - 32750 3.1 36 15 Op 4 41/0.000 - CDS 32755 - 34266 1996 ## COG0056 F0F1-type ATP synthase, alpha subunit 37 15 Op 5 38/0.000 - CDS 34289 - 34828 538 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 38 15 Op 6 37/0.000 - CDS 34828 - 35343 662 ## COG0711 F0F1-type ATP synthase, subunit b - Prom 35377 - 35436 3.6 - Term 35389 - 35428 3.7 39 15 Op 7 40/0.000 - CDS 35441 - 35653 461 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K 40 15 Op 8 . - CDS 35696 - 36424 761 ## COG0356 F0F1-type ATP synthase, subunit a 41 15 Op 9 . - CDS 36450 - 36800 233 ## SE1707 hypothetical protein - Prom 36857 - 36916 4.2 42 16 Op 1 2/0.000 - CDS 36953 - 38086 1177 ## COG0381 UDP-N-acetylglucosamine 2-epimerase 43 16 Op 2 5/0.000 - CDS 38123 - 38752 960 ## COG0035 Uracil phosphoribosyltransferase 44 16 Op 3 3/0.000 - CDS 38781 - 40019 1506 ## COG0112 Glycine/serine hydroxymethyltransferase 45 16 Op 4 1/1.000 - CDS 40044 - 40568 566 ## COG4475 Uncharacterized protein conserved in bacteria - Prom 40594 - 40653 7.8 - Term 40579 - 40633 6.1 46 17 Op 1 3/0.000 - CDS 40677 - 41096 260 ## COG0394 Protein-tyrosine-phosphatase 47 17 Op 2 10/0.000 - CDS 41093 - 42136 1123 ## COG0009 Putative translation factor (SUA5) - Prom 42222 - 42281 3.1 - Term 42233 - 42275 -0.8 48 17 Op 3 32/0.000 - CDS 42301 - 43137 197 ## PROTEIN SUPPORTED gi|170019361|ref|YP_001724315.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 49 17 Op 4 3/0.000 - CDS 43124 - 44200 1247 ## COG0216 Protein chain release factor A 50 17 Op 5 3/0.000 - CDS 44200 - 44799 565 ## COG1435 Thymidine kinase - Prom 44899 - 44958 10.7 51 18 Op 1 9/0.000 - CDS 45087 - 45344 454 ## PROTEIN SUPPORTED gi|27468636|ref|NP_765273.1| 50S ribosomal protein L31 type B - Prom 45390 - 45449 4.5 52 18 Op 2 1/1.000 - CDS 45462 - 46778 1409 ## COG1158 Transcription termination factor - Prom 46898 - 46957 10.4 - Term 47005 - 47050 9.2 53 19 Tu 1 . - CDS 47082 - 48509 1818 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 48620 - 48679 7.2 - Term 48665 - 48709 5.7 54 20 Tu 1 . - CDS 48937 - 50196 1617 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase - Prom 50251 - 50310 10.2 Predicted protein(s) >gi|224999999|gb|ACJC01000001.1| GENE 1 947 - 1402 288 151 aa, chain - ## HITS:1 COG:SA1867 KEGG:ns NR:ns ## COG: SA1867 COG3091 # Protein_GI_number: 15927637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 151 1 151 151 179 58.0 2e-45 MNNLALQSLTESIAIKYFGKAFKHEVYYNKRLRTTGGRYILSSHNIEINPKQYEMFGEKA VIDIIKHELCHYFLHLSGEGYQHRDKAFKILSAKVGAPRFCTPTESYQDRANYKYKCIYC EQEFIRIKRVNLEKMRCGRCGGILKLLQTRK >gi|224999999|gb|ACJC01000001.1| GENE 2 1395 - 3545 171 716 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM 44291] # 630 711 196 274 489 70 45 2e-11 MDNSLIETIVSKYQFSEKQIKAVLKLLKENNTVPFIARYRKEATGGLDEVEIKQINDEYN YMLNLQKRKEEVIHNIDQQGLLTSELKQDILTQTKLQRVEDLYRPYKQKKKTRATEAKRK GLEDLADWFSQSKLDSKIEDKARLFLNDEVTTIEDAIEGAKDIIAERISDNPQYRSKILK DVYNQGLIVSSKKKKAEDEKQTFSMYYDYNEPIKRIANHRVLAMNRGEKEKVLSIKIDFD TTRIQREIENVEIKTQNEATPFIKEAIQDSLKRLILPSIEREIRGDLTQNAESHAIDVFS ENLRNLLLQPPMKGKQILGVDPAFRTGCKLAVVNPFGTFIAKGVIYPHPPISKIESAEKE LVKMISDYDIELLAIGNGTASRETEQFVAQVIKKYQLQAQFIIVNEAGASVYSASEIARQ EFPDFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKDLSRALTFVVETAV NQVGVDVNTASKSLLQYVSGLTSTIAQNIIDYREENGPIKHHKEISRIKRLGAKTFEQSI GFLRIVDGKEPLDNTAIHPESYDVAYRMLHQLDLTTQDIGSVKLKNTLSNVNISTLVSQL NIGEPTLKDIIQSLIAPNRDPRDEFETPILKSDVLSIEDLSKGMKLNGTVRNVVDFGAFV DIGVKQDGLVHISKLSKKFVKNPMDMISVGDIVEVWILDIDENKGKVSLTMVDPNE >gi|224999999|gb|ACJC01000001.1| GENE 3 3837 - 4607 850 256 aa, chain - ## HITS:1 COG:SA1869 KEGG:ns NR:ns ## COG: SA1869 COG1191 # Protein_GI_number: 15927639 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 408 92.0 1e-114 MAKESKSASEVSPEQINQWIKQHQENEDSLAQDKLVKHYRKLIESLAYKYSKGQSHHEDL VQVGMVGLIGAINRFDLSFDRKFEAFLVPTVIGEIKRYLRDKTWSVHVPRRIKEIGPRIK KVSDELTNELERSPSISEIAQRLEVSDEEVLEAMEMGQSYNALSVDHSIEADKDGSTVTL LDIMGQQDDNYDLTEKRMILERILPILSERERQIIQCTFIEGLSQKETGERIGLSQMHVS RLQRTAVKKLQEAARQ >gi|224999999|gb|ACJC01000001.1| GENE 4 4582 - 5061 515 159 aa, chain - ## HITS:1 COG:SA1870 KEGG:ns NR:ns ## COG: SA1870 COG2172 # Protein_GI_number: 15927640 # Func_class: T Signal transduction mechanisms # Function: Anti-sigma regulatory factor (Ser/Thr protein kinase) # Organism: Staphylococcus aureus N315 # 1 159 1 159 159 248 84.0 3e-66 MQSTQDYIEMRLPASAEYVSLIRLTLSGVFSRAGASYDDIEDSKIAVSEAVTNAVKHAYK KNSETGMINLCFEIFDDRIKIVISDQGESFDYEATKSHLGPYNDNENIDFLREGGLGLFL IESLMDEVTVYKESGVTISMIKYIKKEQVRNNGERVEIS >gi|224999999|gb|ACJC01000001.1| GENE 5 5063 - 5389 501 108 aa, chain - ## HITS:1 COG:SA1871 KEGG:ns NR:ns ## COG: SA1871 COG1366 # Protein_GI_number: 15927641 # Func_class: T Signal transduction mechanisms # Function: Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) # Organism: Staphylococcus aureus N315 # 1 108 1 108 108 175 88.0 2e-44 MNLNIETITHDDFYEVKVGGELDVYTVPELEEVLVPMRQEGTHDVHVNLANVSYMDSTGL GLFVGTLKALNQNDKNLYILGVSERIGRLFDITGLKDLMHVNEGTEVE >gi|224999999|gb|ACJC01000001.1| GENE 6 5489 - 6490 901 333 aa, chain - ## HITS:1 COG:SA1872 KEGG:ns NR:ns ## COG: SA1872 COG2208 # Protein_GI_number: 15927642 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Serine phosphatase RsbU, regulator of sigma subunit # Organism: Staphylococcus aureus N315 # 1 333 1 333 333 549 84.0 1e-156 MEEFTKSYKALVKESLITNNKTLLIKKCEAFTNEVIKKDVLPEDIVEIHKDYINTLDLAE EDILETLDVLQEVVKGFGYSYRDYQRLVNKLQVHDKEMDLASRLQQTMLKADIPQFDSIQ IGVISVAAQKVSGDYFNLIDHKDGTMSFAVADVIGSGIPAALAMSMIKFGMDAYGHSQLP SDGLKRLNRVVEKNVNQNMFVTMFYGLYEEMNHLLYCSSAGHEPGYIYRAETEAFEEIGV RGRVLGVSPKTRYSQQEIPIYLDDLIIIFTDGVTEARDVEGNFIDKDKLLDLIQKYKHMH PQDIVQIIYEAILKLQNPARKDDMTILIIKRVN >gi|224999999|gb|ACJC01000001.1| GENE 7 6836 - 7198 403 120 aa, chain - ## HITS:1 COG:SA1873 KEGG:ns NR:ns ## COG: SA1873 COG2337 # Protein_GI_number: 15927643 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Staphylococcus aureus N315 # 1 120 1 120 120 196 92.0 1e-50 MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVE IEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTFLSDSKMIEVDNALDISLGLNNFDHHKS >gi|224999999|gb|ACJC01000001.1| GENE 8 7195 - 7365 170 56 aa, chain - ## HITS:1 COG:no KEGG:SERP1682 NR:ns ## KEGG: SERP1682 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 56 1 56 56 84 100.0 1e-15 MLSFNQNRNHSLEQSLKEGYAQMADLNLSLATEAFPIECEACDCNESHLISNSKNE >gi|224999999|gb|ACJC01000001.1| GENE 9 7452 - 8600 1325 382 aa, chain - ## HITS:1 COG:SA1874 KEGG:ns NR:ns ## COG: SA1874 COG0787 # Protein_GI_number: 15927645 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Staphylococcus aureus N315 # 1 382 1 382 382 568 70.0 1e-162 MSEKFYRATYLNVNLDAILANYQNFNQLHANKTVISVIKANGYGLGSVKIAQHLMRHGAT FFAVATLDEAIELRMHGVDAKLLVLGVVPTEDIEKAIQHRVALTVPSKAWLKETIKQIPD DNQKNLWLHVKLDTGMGRIGMKDIYEYKEVVDLINKRNHLVFEGVYTHFASADEPGSSMN EQYTLFKEMVNQVEKPIYIHCQNSAGSLLMDGQFCNAIRLGISLYGYYPSEYVKDNVKVH LRPSAQLVSETVQVKTLKAGETVSYGRTYTAAEEMTIAILPIGYADGYLRSMQGAFVNVN GNQCEVIGRICMDQMIVKVPSHVKTGEKVILMDNHVDSPQSAEAVANKQGTINYEVLCNL SRRLPRIYYYDNNEEVTNELLK >gi|224999999|gb|ACJC01000001.1| GENE 10 8667 - 9020 178 117 aa, chain - ## HITS:1 COG:SA1875 KEGG:ns NR:ns ## COG: SA1875 COG0736 # Protein_GI_number: 15927646 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Staphylococcus aureus N315 # 1 116 1 117 119 164 70.0 3e-41 MIYGIGIDLIEIKRIKNLQNQTKFIERILTIEERDKLNQYTHEQRRLEFLAGRFTVKEAF SKALGTGLGKSVSFQDINCYNDALGKPCIDYPGFDTHVSITHTENYAMSQVILEKNE >gi|224999999|gb|ACJC01000001.1| GENE 11 9059 - 9577 338 172 aa, chain - ## HITS:1 COG:SA1876 KEGG:ns NR:ns ## COG: SA1876 COG3402 # Protein_GI_number: 15927647 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 158 1 159 163 114 38.0 7e-26 MKSYKYMHQNGIKVMRISGAFWTLLLVIALSILILLNELKFHFINTKNLIIGAIILTTIV CILFMILVPWFKFKHLRYFLDDKEIHIREGIIFIDVHVIPYFRIQNIDIVEGFIMRKFQL ASLSLSTAGGNSEIALIDIREAQRLKKQIKQQKSITTNVASSEKINDDILKT >gi|224999999|gb|ACJC01000001.1| GENE 12 9564 - 11069 1124 501 aa, chain - ## HITS:1 COG:SA1877 KEGG:ns NR:ns ## COG: SA1877 COG3428 # Protein_GI_number: 15927648 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 501 1 527 527 437 45.0 1e-122 MYSPQKLHPISYIDGLISVIKSNFIVIIIFLFNIKDFKYDDFSSYIIPGIMTLIFSIGFI HNIIKVYNTRYWIEEDHFILTTGVFNKERKELNISRIQSADTSQGLINQIVGGVELIIKT PSDGIELGTISKKQSEVIEQELQSIQERMNNQVNQEAKELNEENHTQTYQQHAKPQYAIF KMPFKQLLFMSMTSGAIALAFVTLSPIIGSLSSVIPWDKFGEEISSVFKTIYFIVIFIVI LVLLLSYIIGTVMYLIKFYGYRVIQENHQLKIQYGLFTKKNITVPTDRLQGVLEHQSFIR KLFGYTSIHFYITSDIDGTEGEPTDNDGRIMILPFIPRKEAYKVIRPLVPEMTFNHAKIG MPLKGFHRHFLIPSLCLIGMGIIGWYMWSLWSLIIALLPISLFFVYAILYTRFSGFSFSE SELVVQKASILNIKRFYVKKEKVLGMAISQHPFLERSQLANFQFVIAKGSSRQNIGLKFS EVDNVLKLKNWYMKGDTHEVL >gi|224999999|gb|ACJC01000001.1| GENE 13 11062 - 11541 254 159 aa, chain - ## HITS:1 COG:no KEGG:SE1678 NR:ns ## KEGG: SE1678 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 159 1 159 159 264 96.0 6e-70 MKNDSTFHRSPIQALKYYYITSCIGLFILLIIFSLLLYFSFLNHWWPFTSYIFLGLGLLS ILNTCISPLIKYRYRYYKIHEDFVILKRLFIFKKEELSKIERIQFIDIGTNPLSKKLNLN SVTLFTAGHTISFPIISEKEAQNIQQQILLRLRGANDDV >gi|224999999|gb|ACJC01000001.1| GENE 14 11795 - 13324 1921 509 aa, chain - ## HITS:1 COG:SA1885 KEGG:ns NR:ns ## COG: SA1885 COG0513 # Protein_GI_number: 15927656 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 1 509 1 506 506 804 87.0 0 MQNFKELGISDKTVQTLEAMGFKEPTPIQKDSIPYALEGDDILGQAQTGTGKTGAFGIPL IEKVVGQQGVQSLILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGP QIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML FSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP ELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDVNN RRMKALRPPHRKEVLKAREDDIKDRVQNWMSRENEPRLQRISSELLKEYDSTELVASLLQ ELVEANDEVEVQLTFEKPLARKNRSSKGGFRRSNHKRGNGKFDNKNRRSKGSKGQSSKKK NSKKFDRRDKQQKIGNQSLKGRTFADHQK >gi|224999999|gb|ACJC01000001.1| GENE 15 13622 - 14977 1330 451 aa, chain - ## HITS:1 COG:SA1886 KEGG:ns NR:ns ## COG: SA1886 COG0770 # Protein_GI_number: 15927657 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Staphylococcus aureus N315 # 1 451 1 451 452 630 71.0 1e-180 MINVTLEQIKNWIDCEIDEKYLKETINGVSIDSREINEGSLFIPFKGENVDGHRFITQAL NDGAGAVFSEKENRYSEEIQGPIIWVEDTLIALQQLAKAYLNHVNPKVIAVTGSNGKTTT KDMIESVLSTEFKVKKTQGNYNNEIGMPLTLLELDEDTEISILEMGMSGFHQIELLSNIA QPDIAIITNIGESHMQDLGSREGIAKAKFEITTGLKTNGIFIYDGDEPLLKPHVTQVKDA KLISIGLNSDNTYTCHMNDVKNEGIHFTINQKEHYHLPILGTHNMKNAAIAIAIGHELGL NETIIQNNIHNVQLTAMRMERHESSNNVTVINDAYNASPTSMKAAIDTLSVMKGRKILIL ADVLELGPNSQVMHKQVGEYLKDKNIDVLYTFGKEASYIHDSGKIFVKEAKHFDQKEQLI QTLISQVKPEDKVLVKGSRGMKLEEVVDALL >gi|224999999|gb|ACJC01000001.1| GENE 16 14989 - 16062 1240 357 aa, chain - ## HITS:1 COG:SA1887 KEGG:ns NR:ns ## COG: SA1887 COG1181 # Protein_GI_number: 15927658 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 625 86.0 1e-179 MTKENICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIK NTDELVINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNG VLAASSSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPAN LGSSVGISKCNNEEELKSGIAEAFQFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVV KDVAFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTDDN QIYINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLAKERYEDKKKNKYKIDY >gi|224999999|gb|ACJC01000001.1| GENE 17 16453 - 17664 961 403 aa, chain + ## HITS:1 COG:SA1888 KEGG:ns NR:ns ## COG: SA1888 COG0772 # Protein_GI_number: 15927659 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Staphylococcus aureus N315 # 1 391 1 391 400 550 80.0 1e-156 MNYSSRQQPKRNWLRKVDWILVLVISLLALTSVILISSAMGGGQYSANFSIRQIIYYIFG AIIALLIMIISPKKIKSNTYILYSIFCILLIGLLILPETSITPIINGAKSWYSFGPISIQ PSEFMKIILILALAKTISKHNQFTFNKSFQSDLMLFFKIIGVSIIPMALILLQNDLGTTL VLCAIIAGVMLVSGITWRILAPLFIVAFVSGSSIILAIIYKPSLIESLLGIKMYQMGRIN SWLDPYSYSSGDGYHLTESLKAIGSGQLLGKGYNHGEVYIPENHTDFIFSVIGEEMGFIG SVLLILLFLFLIFHLIRLASKIDNQFNKVFIIGYVSLIVFHVLQNIGMTVQLLPITGIPL PFISYGGSSLWSLMTGIGVVLSIYYHEPQRYQIPALSKKSNTI >gi|224999999|gb|ACJC01000001.1| GENE 18 18043 - 18252 204 69 aa, chain - ## HITS:1 COG:no KEGG:SERP1693 NR:ns ## KEGG: SERP1693 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 69 1 69 69 117 95.0 2e-25 MKLKKGLIHVSGIKTTEQEKQLKDHLSKMIGINSVDIDYQMNEIRVEFDTPANLNNIEKE IYDCGFRIL >gi|224999999|gb|ACJC01000001.1| GENE 19 18259 - 18570 327 103 aa, chain - ## HITS:1 COG:SA1890 KEGG:ns NR:ns ## COG: SA1890 COG1937 # Protein_GI_number: 15927662 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 7 103 1 97 97 145 85.0 2e-35 MNRGDFMADMESAHHSEQIKTNLKSRLNRIEGQVRAINRMIDDDVYCDDVLTQIRATRSA LNSVAIKLLDHHMKGCIMEKINDGAQEEAMDELLVTFQKLIKD >gi|224999999|gb|ACJC01000001.1| GENE 20 18726 - 20210 1221 494 aa, chain + ## HITS:1 COG:SA1891 KEGG:ns NR:ns ## COG: SA1891 COG1502 # Protein_GI_number: 15927663 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Staphylococcus aureus N315 # 1 494 1 494 494 796 80.0 0 MIEVFTMALHQSNIIINILLVSAFLLNLVFAFIIIFMERRTANSIWAWLLVLVFLPLVGF ILYLLLGRQIQREHIFKLAKEDKVGLEMIVDEQLEALKKQDFSKGNHQIVKFKEMVQMLL YNNAAFLTTDNDLTIYTDGHQKFDDLINDIRHAQSYIHIQYYIIHSDNLGKQLLHELEKK AEEGIEVKMLYDDMGSRDLRKKDLKKFRQRGGHAESFFPSKLPLINLRMNNRNHRKIVVI DGTIGYVGGFNVGDEYLGKSKKFGYWRDTHLRIKGDAVNALQLRFILDWNSQSTRDNLTY ESRYFPDVDSGGTIGIQIASSGPDEDWEQIKYGYLKMISSAKESIYIQSPYFIPDQAFLD SIKIAALGGVDVNIMVPNKRDHPFVYWATLKNVASLLEAGVNVYHYDNGFLHSKTLVIDD EVASVGTANMDNRSFTLNFEVNAFIYDEGVARSLKQAFINDMKLSNKLTSEAYAKRNILV KFKEGISQLLSPIL >gi|224999999|gb|ACJC01000001.1| GENE 21 20392 - 21045 639 217 aa, chain + ## HITS:1 COG:SA1892 KEGG:ns NR:ns ## COG: SA1892 COG1418 # Protein_GI_number: 15927664 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Staphylococcus aureus N315 # 7 215 7 214 215 219 60.0 4e-57 MNSRMKIKNAYEYMKSFHQHDTTGHDIAHVERIYNNACYIAKQENITDTFVIELSSLLHD TVDSKLTDEILAYDQLKQFLSTLDLSDEISQQVLYIIKHMSYRAGKNNHVKLSIDGEIVR DADRLDAIGAIGIARTFQFSGHFGEPMWTETKFSNEALHTSHIEELDNSAIKHFYEKLFK LKDLMHTPTAKKLAEERHQFMIQFLKQFMSEWNFNKE >gi|224999999|gb|ACJC01000001.1| GENE 22 21152 - 22024 946 290 aa, chain - ## HITS:1 COG:SA1893 KEGG:ns NR:ns ## COG: SA1893 COG0706 # Protein_GI_number: 15927665 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Staphylococcus aureus N315 # 1 290 1 290 290 460 83.0 1e-129 MKKKALLPLFLGIMIFLAGCDYSTPEKQDGFFFNTFVQPMKHLLQWLGNDVFHNNFGLAI IVLVLFIRLILLPFMLSNYKNSHMMREKMKVAKPEVDGIQEKVKRARTQEEKMAANQELM EVYKKYDMNPMKSMLGCLPILIQMPIIMGLYFVLKDKLVNGLSEHPHFLWFNLTKPDIWI TVIAGVLYFIQAVVSSKTMPQEQRQMGYMMMVISPIMIIWISLQASSALGLYWSVSALFL VIQTHFANIYYSKLAKKEVQPFIEKYEREHNPSSKKKGKNTQVVSKKNKK >gi|224999999|gb|ACJC01000001.1| GENE 23 22113 - 22754 643 213 aa, chain - ## HITS:1 COG:SA1894 KEGG:ns NR:ns ## COG: SA1894 COG0352 # Protein_GI_number: 15927666 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Staphylococcus aureus N315 # 2 212 1 211 213 259 61.0 3e-69 MMFDSKQLSVYFICGTQDIPKNKSIEQVLKEALEAGITLYQFREKGPNALKGEKKKQLAL KLKQLCHSYHVPMIVNDDVQLAQEINADGIHVGQDDMEIQQFASQFKNKIIGLSVGNLKE YQQSDLSKVDYIGVGPMYTTSSKDDASKPVGPSMISQLRLYIHDVPIVAIGGINETNVQP IVDEGADGISVISAITRSTNIDKTVKYFLRYFT >gi|224999999|gb|ACJC01000001.1| GENE 24 22757 - 23545 916 262 aa, chain - ## HITS:1 COG:SA1895 KEGG:ns NR:ns ## COG: SA1895 COG2145 # Protein_GI_number: 15927667 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Staphylococcus aureus N315 # 1 262 1 262 263 327 65.0 1e-89 MNNLERLRSENPLVICYTNDVVKNFTANGLLSLGASPAMSEAPEEAEDFTRMASALLINI GTLTRENEEDIIKIGKIANQQGTPIVFDPVAVGASTYRKNFCQRFLDEVNVTVIKGNASE ILTLIDFNTTMKGTDSDSELDSVNIAKKAANTLNTAIVITGEDDIIAKNEKIIKLSNGSP LLTKITGAGCLLGGVLASFLFRNTQPSIDLLVEAVSVYNIAAEFAEQAPHVNGPGTFLSE LLDQLYQMNDIAYKNQVKKVEI >gi|224999999|gb|ACJC01000001.1| GENE 25 23538 - 24359 918 273 aa, chain - ## HITS:1 COG:SA1896 KEGG:ns NR:ns ## COG: SA1896 COG0351 # Protein_GI_number: 15927668 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Staphylococcus aureus N315 # 1 273 1 273 276 426 78.0 1e-119 MHKPKIALTIAGTDPTGGAGVMADLKSFHACGVYGMATITSIVAQNTLGVQHIHNLETSW VKEQLDSVFDDELPQAIKTGMIATKETMELIQSYLKEHSNIPYVIDPVMLAKSGDSLMDD NTKNHLQSTLLPLADVVTPNIPEAEEITGIKINDEESIRKAGQIFINEIGSKGVVIKGGH SADLNNAKDFLFTKNETYTFENRRFDTKHTHGTGCTFSAVITAELAKGRSINDAVKKAKE FISLSIEHTPEIGRGRGPVNHFAYMKKVGLDDE >gi|224999999|gb|ACJC01000001.1| GENE 26 24352 - 25041 732 229 aa, chain - ## HITS:1 COG:SA1897 KEGG:ns NR:ns ## COG: SA1897 COG0819 # Protein_GI_number: 15927669 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Staphylococcus aureus N315 # 1 228 1 228 229 293 62.0 1e-79 MTFSKELREASKPIIDDIYNDGFIQDLLAGKLSNQAVRQYLRADASYLKEFTNIYAMLIP KMSSMDDVKFLVEQIEFMLEGEVEAHEVLADFINEPYEEIVKEKVWPPSGDHYIKHMYFN AFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKESVTSKWFQFYSTEMDELVDVFDQ LMDRLTKHCSETEKNEIKENFLQSTIHERHFFNMAYINEKWEYRGDNNA >gi|224999999|gb|ACJC01000001.1| GENE 27 25325 - 25984 934 219 aa, chain - ## HITS:1 COG:no KEGG:SERP1702 NR:ns ## KEGG: SERP1702 # Name: sceD # Def: SceD protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 219 1 219 219 287 99.0 2e-76 MKKTLVASSLAIGLGVVAGNAGHDAHASETTNVDKAELAQKALTNDQSLNESPVQEGAYN INFDYNGNSYHFESDGSTWSWSYESTNNATQPVQPSQSQVATQQQPVQVSAPQNEQTAQP QTKSTSASQTSSSKASSGSSVNVNSHLQQIAQRESGGDIHAINPSSGAAGKYQFLQSTWD SVAPSQYKGVSPAKAPESVQDKAAVKLYNTGGPGHWVTA >gi|224999999|gb|ACJC01000001.1| GENE 28 26372 - 26767 428 131 aa, chain - ## HITS:1 COG:SA1899 KEGG:ns NR:ns ## COG: SA1899 COG0629 # Protein_GI_number: 15927671 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 185 74.0 2e-47 MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNI EKYTSQGTLVGITGQMRSRKYEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNT YQPDDLEIIHI >gi|224999999|gb|ACJC01000001.1| GENE 29 26928 - 27398 486 156 aa, chain + ## HITS:1 COG:no KEGG:SERP1704 NR:ns ## KEGG: SERP1704 # Name: ywpF # Def: YwpF protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 11 156 1 146 146 268 97.0 5e-71 MNKKIWRSDIMKTFKAVRFQIVNEHGAISEYAIEDGVIINKEGSGTGWLLEIVISNEHYE TFNQYKENKQLLDIRVVITRPANDPALFNATVKSVKNFKYSMSVVLECHIYTLRQEYAES LLEELVDEGLTGEKLKKTFNRMMQSKPKLKDEKIER >gi|224999999|gb|ACJC01000001.1| GENE 30 27716 - 28153 503 145 aa, chain - ## HITS:1 COG:SA1901 KEGG:ns NR:ns ## COG: SA1901 COG0764 # Protein_GI_number: 15927673 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Staphylococcus aureus N315 # 1 144 1 144 146 274 93.0 5e-74 METIFDYNQIKQIIPHRQPFLLIDKIVEYDEGKRCVGLKQVSGNEPFFQGHFPNYAVMPG VLITEALAQTGAVAMLNSEENKGKIALFAGIDKCRFKKQVVPGDTLMLEVEITKIKGPIG KGSAKATVDGQLACSCELTFAIQDA >gi|224999999|gb|ACJC01000001.1| GENE 31 28187 - 29452 1497 421 aa, chain - ## HITS:1 COG:SA1902 KEGG:ns NR:ns ## COG: SA1902 COG0766 # Protein_GI_number: 15927674 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Staphylococcus aureus N315 # 1 420 1 420 421 677 88.0 0 MDKIVINGGNRLTGEVNVEGAKNAVLPVLTASLLASEGQSKLVNVPELSDVETINNVLST LNANVEYDKDKNAVKVDATKTLNEEAPYEYVSKMRASILVMGPLLARLGHAIVALPGGCA IGTRPIEQHIKGFEALGADIHLENGNIYANAKDGLKGAHIHLDFPSVGATQNIIMAASLA SGKSIIENVAKEPEIVDLANYINEMGGKITGAGTDTITIHGVEKLYGVEHAIIPDRIEAG TLLIAGAITRGDIFVRGAIKEHMASLIYKLEEMGIDLEYNEEGIRVTANGDLNPVDVKTL PHPGFPTDMQSQMMALLLTANGHKVITETVFENRFMHVAEFRRMNANISVEGRSAKIEGK SHLQGAQVKATDLRAAAALILAGLVAEGTTQVTELKHLDRGYVNLHGKLKSLGANIERVN Q >gi|224999999|gb|ACJC01000001.1| GENE 32 29562 - 29795 147 77 aa, chain - ## HITS:1 COG:SA1903 KEGG:ns NR:ns ## COG: SA1903 COG4836 # Protein_GI_number: 15927675 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 108 81.0 2e-24 MDYLGQFAIVHLILHVVCICVAYWALNSIKLDQLFKKGYPLQVQVCMIFISILLGTAVSN FIVDLLQYSTQVKYLIK >gi|224999999|gb|ACJC01000001.1| GENE 33 29944 - 30348 667 134 aa, chain - ## HITS:1 COG:SA1904 KEGG:ns NR:ns ## COG: SA1904 COG0355 # Protein_GI_number: 15927676 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Staphylococcus aureus N315 # 1 134 1 134 134 192 78.0 2e-49 MNTLRLNIVTPNGSVYEREDVEMAVLQTTAGEMGIMYGHIPTVAALKTGHVKVNFHNGNE FIAVSDGFIEARQHQLSIIVQTAEPASEIDVERAKLAKSRAESHLEDDDDNTDINRAKRA LERANNRLRVAELQ >gi|224999999|gb|ACJC01000001.1| GENE 34 30368 - 31780 1877 470 aa, chain - ## HITS:1 COG:SA1905 KEGG:ns NR:ns ## COG: SA1905 COG0055 # Protein_GI_number: 15927677 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Staphylococcus aureus N315 # 1 470 1 470 470 848 94.0 0 MGIGRVTQVMGPVIDVRFEHNEVPEINNALHIEVPKEDGTLQLTLEVALQLGDDVVRTIA MDSTDGVQRGMEVKDTGRDISVPVGDVTLGRVFNVLGETIDLDEKIDDSVRRDPIHRQAP GFDELSTKVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGIS VFAGVGERTREGNDLYYEMSDSGVIKKTAMVFGQMNEPPGARMRVALSGLTMAEYFRDEE GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERISSTNKGSVTSI QAVFVPADDYTDPAPATTFAHLDSTTNLERKLTEMGIYPAVDPLASTSRALEPSVVGQEH YDVAREVQSTLQKYRELQDIIAILGMDELSDEDKQTVERARRIQFFLSQNFHVAEQFTGQ KGSYVPVKTTVADFRDILDGKYDHIPEDAFRLVGSMEDVIEKAKDMGVEV >gi|224999999|gb|ACJC01000001.1| GENE 35 31802 - 32668 977 288 aa, chain - ## HITS:1 COG:SA1906 KEGG:ns NR:ns ## COG: SA1906 COG0224 # Protein_GI_number: 15927678 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Staphylococcus aureus N315 # 1 288 1 288 288 437 83.0 1e-122 MASLKEIDSRIKSTSKMKQITKAMNMVSSSKLRRAEKNTKSFRPYMEKMQDAITAVAGSN STSNHPMLKSRDIKRSGYLVITSDKGLAGAYSTNVLKSLVNDIKSKHNDSSEYSLIVLGQ QGVDFFKHRGYEIESSLVEVPDQPSFKSIQSIAKHAIDLFSEENIDELTIYYSHYVSVLE NKPATKQVLPLSQEDSGQGHGQMSSYEFEPDKESILSVILPQYVESLIYGTILDAKASEH ASRMTAMRNASDNATELIDDLSLEYNRARQAAITQQITEIVGGSSALE >gi|224999999|gb|ACJC01000001.1| GENE 36 32755 - 34266 1996 503 aa, chain - ## HITS:1 COG:SA1907 KEGG:ns NR:ns ## COG: SA1907 COG0056 # Protein_GI_number: 15927679 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Staphylococcus aureus N315 # 1 501 1 501 502 918 94.0 0 MAIKAEEISALLRSQIENYESEMSVTDVGTVLQIGDGIALIHGLNDVMAGELVEFHNGVL GLAQNLEESNVGVVILGPYEEISEGDEVKRTGRIMEVPVGEEMIGRVVNPLGQPIDGQGP INATKTRPVEKKATGVMDRKSVDEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTTVAI DSILNQKDQDTICIYVAIGQKDSTVRANVEKLRQAGALDYTIVVSASAADPAPLLYIAPY SGVTMGEEFMFNGKHVLIVYDDLTKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLNDDLGGGSITALPIIETQAGDISAYVPTNVISITDGQIFLQSDLFFSGVRPAINAG QSVSRVGGSAQIKAMKKVAGTLRLDLASYRELESFAQFGSDLDEFTAKKLARGERTVEVL KQGQNNPLPVEHQVLIIFALTKGYLDDIPVQDITRFEEEFNHWADSNATELLNEIRETGA LPDADKFDSAITEFKKGFNKSVE >gi|224999999|gb|ACJC01000001.1| GENE 37 34289 - 34828 538 179 aa, chain - ## HITS:1 COG:SA1908 KEGG:ns NR:ns ## COG: SA1908 COG0712 # Protein_GI_number: 15927680 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Staphylococcus aureus N315 # 1 179 1 179 179 214 65.0 8e-56 MAKVAKKYAKALFDVALDTNQLDVVYEDLETISHSSFDFIKQLKAIDSNPSLTANQRKEF VERVYNEANPYVVNTLKVLADNRHISIVENVFKSFQNLYNKHYKQDFAIIESTYELSEDE ISRIVELIKKQTELSNVIVNTKINQDLIGGFRVKVGTTVMDGSVRNDLVQLQRKFERAN >gi|224999999|gb|ACJC01000001.1| GENE 38 34828 - 35343 662 171 aa, chain - ## HITS:1 COG:SA1909 KEGG:ns NR:ns ## COG: SA1909 COG0711 # Protein_GI_number: 15927681 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Staphylococcus aureus N315 # 1 171 1 173 173 215 82.0 3e-56 MTATANTFILGAGVEWGTTIVTLATFVILIILLKKFAWGPLKEVMDKRERDINKDIDDAE QAKINAQKLEEENRKTLKETQDEVQKILDDAKIQARKQHEEIIHEANEKANGMIETAQSE INSQKERAISDINNQVSELSVLIASKVLRKEISEQDQKELVEKYLKEAGDK >gi|224999999|gb|ACJC01000001.1| GENE 39 35441 - 35653 461 70 aa, chain - ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 70 1 70 70 84 100.0 7e-17 MNLIAAAIAIGLSALGAGIGNGLIVSRTVEGVARQPEARGQLMGIMFIGVGLVEALPIIG VVIAFMTFAG >gi|224999999|gb|ACJC01000001.1| GENE 40 35696 - 36424 761 242 aa, chain - ## HITS:1 COG:SA1911 KEGG:ns NR:ns ## COG: SA1911 COG0356 # Protein_GI_number: 15927683 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Staphylococcus aureus N315 # 1 242 1 242 242 399 87.0 1e-111 MDHKSPLVSWNVFGFDIVFNLASVLMVVITAILVFILAIVCTRNLKKRPTGKQNFIEWVF DFVRGIIESNMAWKKGGNFHFLAVTLILFIFVANMLGLPFAIVTHDHTLWWKSPTADATV TLTLSTTMILLTHYYGIKMRGTKAYAAGYFKPFWPLAIINVFEEFTSTLTLGLRLYGNIF AGELLLGLLASLFFEQPAWGWIISIPGLIVWQAFSIFVGTIQAYIFVMLSMVYMSHKVAD GH >gi|224999999|gb|ACJC01000001.1| GENE 41 36450 - 36800 233 116 aa, chain - ## HITS:1 COG:no KEGG:SE1707 NR:ns ## KEGG: SE1707 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 116 1 116 116 178 94.0 4e-44 MRRFNIIFKQYLQYYLYLLVIVGILYSISPRPFFLGLMIGTCGSLVNTYIFEIYLAKSMH KESTQMSTGSTWRYLVAIIACVLWLFFKEHINIIGVLIGLMISYIVIILRPLLQRE >gi|224999999|gb|ACJC01000001.1| GENE 42 36953 - 38086 1177 377 aa, chain - ## HITS:1 COG:SA1913 KEGG:ns NR:ns ## COG: SA1913 COG0381 # Protein_GI_number: 15927685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Staphylococcus aureus N315 # 1 371 6 376 376 548 72.0 1e-156 MTIFGTRPEAIKMAPLIKTLEKDSNLEPVVVVTAQHREMLDSVLNTFNISADYDLNIMKA GQTLSEVTSEAMKKLEDIIQKEVPDMVLVHGDTVTTFSGALAAFYSQTPIGHVEAGLRSY NKYSPYPEEINRQMVGVMADLHFAPTYNAAQNLVKEGKLAKHIAITGNTAIDAMKYTIDY QYSSSIIQKHKNKNFILLTAHRRENIGKPMINVFKAIRKLIDEYHDLALVYPMHMNPKVR DIAQKYLGNHPRIELIEPLDVVDFHNFAKQAYLIMTDSGGIQEEAPSLHKPVLVLRDSTE RPEGVDAGTLRVIGTNEEDVYNETKKLLEKPDLYQKMSQAVNPYGDGQASERIVQHIKYY FNLTNDRPNHFEYTKDL >gi|224999999|gb|ACJC01000001.1| GENE 43 38123 - 38752 960 209 aa, chain - ## HITS:1 COG:SA1914 KEGG:ns NR:ns ## COG: SA1914 COG0035 # Protein_GI_number: 15927686 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 209 1 209 209 383 94.0 1e-106 MSKVHVFDHPLIQHKLSYIRDAHTGTKEFRELVDEVGMLMAYEVTRDLELQDVEIQTPVT KMTAKRLAGKKLAIVPILRAGLGMTDGVLSLVPAARVGHIGLYRDPETLEAVEYFAKMPQ DIDERQIIVVDPMLATGASAIEAISSLKKRGAKSIRFMCLIAAPEGVEKMQEAHPDVDIY IAALDEKLNDKAYITPGLGDAGDRLFGTK >gi|224999999|gb|ACJC01000001.1| GENE 44 38781 - 40019 1506 412 aa, chain - ## HITS:1 COG:SA1915 KEGG:ns NR:ns ## COG: SA1915 COG0112 # Protein_GI_number: 15927687 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Staphylococcus aureus N315 # 1 411 1 411 412 717 87.0 0 MSYIEKKDKVVYDAIQKEFQRQNSNIELIASENFVSQAVMEAQGSVLTNKYAEGYPGRRY YGGCEHVDVTEAIAIDRAKSLFGAEHVNVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG GHLTHGAPVNFSGKFYHFVEYGVDQENELINYDEVRRLAIEHQPKLIVAGASAYSRTIDF KKFKEIADEVGAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKE EYKKDIDKTIFPGIQGGPLEHVIAAKAVAFGEALNDDFKDYQNQVIKNAQALAQTLIEEG FRVVSGGTDNHLVAVDVKGSINMTGKLAEETLDKVGITCNKNTIPFDKEKPFVTSGVRLG TPAATTRGFDESAFVEVAKIISLALNNYDNDTKLNEAKERVHALTSKYPLYN >gi|224999999|gb|ACJC01000001.1| GENE 45 40044 - 40568 566 174 aa, chain - ## HITS:1 COG:SA1916 KEGG:ns NR:ns ## COG: SA1916 COG4475 # Protein_GI_number: 15927688 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 174 1 174 174 278 77.0 4e-75 MRDLQQLLDELKDMSFFNPGEMCIIGCSTSEVIGKRIGSVGSMDVAKEIYENLKQLEIDT GVTFAFQGCEHINRAVTIDRANFNPLTMEEVTVIPDVHAGGSLSTYAYQQMEDPIVVEHI TVSKGIDIGQTLIGMHIKHVCVPVRTSVKQIGEAIVTIATSRPKKIGGERAKYQ >gi|224999999|gb|ACJC01000001.1| GENE 46 40677 - 41096 260 139 aa, chain - ## HITS:1 COG:SA1917 KEGG:ns NR:ns ## COG: SA1917 COG0394 # Protein_GI_number: 15927689 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 135 1 135 139 142 51.0 1e-34 MKIIFVCSGNTCRSPLAESIAKSLLPNDSIASRGLFAVEGQAISKESLELIHKYGLPEPS LAQTFRIDDLDADIILTMTQDHKDLIFSMYGRQSNVFTLNEYVGDTQEIDDPFGGSFDVY EQTYIKIYDLVDKIKFKHE >gi|224999999|gb|ACJC01000001.1| GENE 47 41093 - 42136 1123 347 aa, chain - ## HITS:1 COG:SA1918 KEGG:ns NR:ns ## COG: SA1918 COG0009 # Protein_GI_number: 15927690 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Staphylococcus aureus N315 # 1 347 1 348 348 464 63.0 1e-130 MHTQIWDLRMYKNNVSQYPHIDEIKQTFLDGGLVAIPTETVYGLGANARNEEAVENIYVA KGRPSDNPLIVHIHSIEQLDDFVEHIDDKVKVLMDEFWPGPISFILPLKQGYLCSKVTGG LESIAVRMPSHKIGRALLQIVDEPIAAPSANISGRPSPTTFEHVNRDLNGKVNGIVNGDQ CEEGLESTVIDCTQFPFRIARPGSITQDMIETKLPHSINRQIYEENEKPIAPGMKYKHYS PETPLTIVKDLNKKIANDDKWSKVAFVFPQSQRSLIPENSIFISLCENKEDFKSAGHNLY EILHELDQNEEIEEAYIYGFEDNHHTEAIMNRMLKAASYKLVKGEKL >gi|224999999|gb|ACJC01000001.1| GENE 48 42301 - 43137 197 278 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|170019361|ref|YP_001724315.1| N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Escherichia coli ATCC 8739] # 50 276 68 293 310 80 26 2e-14 MVNYKEKFAEAKTIAINEGFESTRAEWLFLDVFGWSKTDYLIHKDEQMSLTSINKLDKAL DRMVTGEPIQYIVGFQSFYGYQFKVNQHCLIPRPETEEVMLHFLELCKKTDTIADIGTGS GAIAITLKLLQPELNVIATDLYEDALSVAKQNASHYHQNIQFLRGNALKPLIEKDIKLDG LISNPPYIGHSEIIDMESTVLNYEPHHALFAEKNGFAIYESILEDLPFVMKQGGHVVFEI GYQQGDILKRMIQDLYPEKEVEIFKDINGNQRIISIIW >gi|224999999|gb|ACJC01000001.1| GENE 49 43124 - 44200 1247 358 aa, chain - ## HITS:1 COG:SA1920 KEGG:ns NR:ns ## COG: SA1920 COG0216 # Protein_GI_number: 15927692 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 566 93.0 1e-161 MFDQLDIVEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQD IEDMLSETSDKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGG DEAAIFAGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGA HRVQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDS AVRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDR SERIRTYNYPQSRVTDHRIGLTLQKLNQIMEGHLDEIVEALTLSEQTEKLKELNNGEL >gi|224999999|gb|ACJC01000001.1| GENE 50 44200 - 44799 565 199 aa, chain - ## HITS:1 COG:SA1921 KEGG:ns NR:ns ## COG: SA1921 COG1435 # Protein_GI_number: 15927693 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Staphylococcus aureus N315 # 1 199 1 199 199 349 86.0 2e-96 MYETYHSGWIETITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNG NEIEAINISTAQEILNHKLEEVNVIGIDEVQFFEDDIVNIVEKLAENGHRVIVAGLDMDF RGEPFKPMPKLLAVSEHITKLQAVCSVCGSPSSRTQRLINGEPAKEDDPIILVGANESYE PRCRAHHIVAPSENEKEEM >gi|224999999|gb|ACJC01000001.1| GENE 51 45087 - 45344 454 85 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27468636|ref|NP_765273.1| 50S ribosomal protein L31 type B [Staphylococcus epidermidis ATCC 12228] # 1 85 1 85 85 179 100 3e-44 MKQGIHPEYHKVIFLDTTTNFKFLSGSTKTSSETMEWEDGNEYPVIRLDVSSDSHPFYTG RQKFAAADGRVERFNKKFGLKSNNN >gi|224999999|gb|ACJC01000001.1| GENE 52 45462 - 46778 1409 438 aa, chain - ## HITS:1 COG:SA1923 KEGG:ns NR:ns ## COG: SA1923 COG1158 # Protein_GI_number: 15927695 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Staphylococcus aureus N315 # 1 438 1 438 438 792 94.0 0 MPGRERTSPQYESFHELYKNNTTKELTQKAKSLKLTNYSKLNKKELVLAIMEAQMEKDGN YYMEGILDDIQQDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK YYGLLQVDFVNDHNAEEVKKRPHFQALTPLYPEERILLETQSTNYSTRIMDLVTPIGLGQ RGLIVAPPKAGKTSLLKEIANAIASNKPEANLFILLVGERPEEVTDIERSVESAEVVHST FDEPPEHHVKVAELLLERAKRLVEIGEDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP ASLHKPKAFFGAARNIEAGGSLTILATALVETGSRMDDMIYEEFKGTGNMELHLDRKLSE RRIFPAIDIGRSSTRKEELLITKAELDSLWQLRNLFTDSTDFTERFIRKLKRSKNNKEFF KQLQKAAEESTKTGRPII >gi|224999999|gb|ACJC01000001.1| GENE 53 47082 - 48509 1818 475 aa, chain - ## HITS:1 COG:SA1924 KEGG:ns NR:ns ## COG: SA1924 COG1012 # Protein_GI_number: 15927696 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 475 1 475 475 817 86.0 0 MRNFTKQYINGEWVDSASGETIDVINPATEEVMGKIANGNEEDVNKAVDAADKVYLEFRH SSVDERRELLDKIVKEYQNRKNDLIEAITDELGAPLSVSENVHYQMGLNHFTAARDALDS FQFEEQRGDDLVVKEAIGVAGLVTPWNFPTNQTSLKLAAAFAAGSPVVLKPSEETPFAAI ILAEIFDKAGVPKGVFNLVNGDGSGVGNPLSEHPKVRMMSFTGSGPTGSKIMEKAAKDFK KVSLELGGKSPYIVLDDVDVEEAANATTKKVVNNTGQVCTAGTRVLIPESIKEDYLTAVK EAFSKVKVGQPREEGTQVGPIISKKQFDQVQDYIDKGINEGAELFYGGPGKPEGLDKGYF ARPTIFINVDNHMTIAQEEIFGPVMSVITYNNLDEAIEIANDTKYGLAGYVIGKDKDTLR HVARSIEAGTIEINEAGRKPDLPFGGYKESGLGREWGDYGIEEFLEVKSIAGYFK >gi|224999999|gb|ACJC01000001.1| GENE 54 48937 - 50196 1617 419 aa, chain - ## HITS:1 COG:SA1926 KEGG:ns NR:ns ## COG: SA1926 COG0766 # Protein_GI_number: 15927698 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Staphylococcus aureus N315 # 1 419 1 419 419 707 85.0 0 MAQEVIKIRGGQTLKGEVEISGAKNSAVAIIPATLLAQGQVKLDGLPQISDVETLVSLLE DLNIKARLNGKQLEVDTTQIENAPLPNNKVESLRASYYMMGAMLGRFKKCVIGLPGGCPL GPRPIDQHIKGFKALGAEIDESSNTSMKLVAKELRGAHIFLDMVSVGATINIMLAAVHAK GQTVIDNAAKEPEVVDVANFLMSMGADIRGAGTTSIKINGVEELKGSEYQIIPDRIEAGS YMCMAAAMGEEVILHNIVPKHVEALTVKLKELGVDIEIEDEKIIIRKQTPYKNVDIKTLV YPGFATDLQQPITPLLFMTEGPSFVTDTIYPARFKHVEELQRMGANIKSDEGTAVIKPST LNGAEVYASDLRAGACLITAGLIAEGVTTIFNVKHIYRGYTNIVEHLKALGADIWTETV Prediction of potential genes in microbial genomes Time: Sun May 29 07:21:21 2011 Seq name: gi|224999998|gb|ACJC01000002.1| Staphylococcus epidermidis W23144 contig00002, whole genome shotgun sequence Length of sequence - 32270 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 19, operones - 7 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 55 - 915 1160 ## COG0191 Fructose/tagatose bisphosphate aldolase - Prom 954 - 1013 8.2 + Prom 958 - 1017 8.7 2 2 Tu 1 . + CDS 1135 - 1656 564 ## SERP1733 hypothetical protein + Term 1803 - 1861 14.1 - Term 1791 - 1849 14.1 3 3 Op 1 5/0.000 - CDS 1882 - 3489 1708 ## COG0504 CTP synthase (UTP-ammonia lyase) - Prom 3637 - 3696 9.7 - Term 3750 - 3795 2.3 4 3 Op 2 1/0.857 - CDS 3826 - 4362 833 ## COG3343 DNA-directed RNA polymerase, delta subunit - Prom 4411 - 4470 7.4 5 4 Tu 1 . - CDS 4473 - 5333 1006 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 5359 - 5418 7.0 6 5 Tu 1 . + CDS 5636 - 6433 823 ## COG5146 Pantothenate kinase, acetyl-CoA regulated - Term 6560 - 6609 14.0 7 6 Tu 1 . - CDS 6655 - 7320 743 ## SERP1738 hypothetical protein - Prom 7391 - 7450 5.5 8 7 Op 1 . - CDS 7494 - 8684 1056 ## SE1730 hypothetical protein 9 7 Op 2 . - CDS 8684 - 9868 1500 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Prom 9922 - 9981 9.8 + Prom 9989 - 10048 8.0 10 8 Tu 1 . + CDS 10095 - 10565 597 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis + Term 10619 - 10667 1.2 - Term 10658 - 10709 10.1 11 9 Op 1 . - CDS 10726 - 11076 411 ## COG4270 Predicted membrane protein 12 9 Op 2 4/0.000 - CDS 11073 - 12263 1473 ## COG1015 Phosphopentomutase 13 9 Op 3 7/0.000 - CDS 12276 - 13577 1444 ## COG0213 Thymidine phosphorylase 14 9 Op 4 . - CDS 13611 - 14273 853 ## COG0274 Deoxyribose-phosphate aldolase - Prom 14420 - 14479 7.4 15 10 Tu 1 . + CDS 14480 - 15190 830 ## COG0813 Purine-nucleoside phosphorylase + Term 15205 - 15258 14.2 - Term 15193 - 15245 13.4 16 11 Op 1 1/0.857 - CDS 15315 - 15761 447 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) - Prom 15796 - 15855 11.3 17 11 Op 2 . - CDS 15948 - 16358 496 ## COG3011 Uncharacterized protein conserved in bacteria - Prom 16402 - 16461 10.0 - Term 16405 - 16459 13.5 18 12 Tu 1 . - CDS 16539 - 17915 1304 ## SE1740 hypothetical protein - Prom 18032 - 18091 12.6 - Term 18096 - 18135 4.0 19 13 Op 1 . - CDS 18148 - 18375 178 ## SERP1751 hypothetical protein 20 13 Op 2 1/0.857 - CDS 18431 - 19369 810 ## COG1482 Phosphomannose isomerase - Prom 19611 - 19670 9.3 - Term 19909 - 19959 -0.6 21 14 Tu 1 . - CDS 20014 - 20670 930 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 20758 - 20817 5.5 + Prom 20720 - 20779 7.2 22 15 Op 1 2/0.000 + CDS 20815 - 21156 296 ## COG0640 Predicted transcriptional regulators 23 15 Op 2 . + CDS 21143 - 22096 773 ## COG1230 Co/Zn/Cd efflux system component + Term 22245 - 22297 14.0 - Term 22233 - 22285 14.0 24 16 Tu 1 . - CDS 22360 - 23091 817 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases - Prom 23181 - 23240 12.6 + Prom 23140 - 23199 5.3 25 17 Tu 1 . + CDS 23224 - 24375 869 ## SERP1758 lytic regulatory protein, putative + Term 24423 - 24469 5.4 - Term 24563 - 24608 11.2 26 18 Tu 1 . - CDS 24692 - 25549 942 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 25633 - 25692 6.9 - Term 26002 - 26034 3.2 27 19 Op 1 5/0.000 - CDS 26050 - 27855 2102 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains - Prom 28025 - 28084 7.0 - Term 28417 - 28458 7.6 28 19 Op 2 6/0.000 - CDS 28486 - 29841 1576 ## COG1109 Phosphomannomutase 29 19 Op 3 7/0.000 - CDS 29866 - 30801 1098 ## COG4856 Uncharacterized protein conserved in bacteria 30 19 Op 4 . - CDS 30802 - 31611 689 ## COG1624 Uncharacterized conserved protein - Prom 31722 - 31781 11.2 - TRNA 31777 - 31849 89.9 # Lys TTT 0 0 - TRNA 31853 - 31927 76.6 # Gln TTG 0 0 - TRNA 31932 - 32015 77.6 # Tyr GTA 0 0 - TRNA 32032 - 32107 95.7 # Val TAC 0 0 - 5S_RRNA 32050 - 32101 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - TRNA 32114 - 32185 68.6 # Glu TTC 0 0 - TRNA 32187 - 32261 88.3 # Asn GTT 0 0 Predicted protein(s) >gi|224999998|gb|ACJC01000002.1| GENE 1 55 - 915 1160 286 aa, chain - ## HITS:1 COG:SA1927 KEGG:ns NR:ns ## COG: SA1927 COG0191 # Protein_GI_number: 15927699 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 1 286 1 286 286 525 95.0 1e-149 MPLVSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGF YTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVEIT SKVVEYAHDRGVSVEAELGTVGGQEDDVVADGVIYADPKECQELVEKTGIDTLAPALGSV HGPYKGEPKLGFKEMEEIGASTGLPLVLHGGTGIPTKDIQKAIPYGTAKINVNTENQIAS AKAVREVLNNDKDVYDPRKYLGPAREAIKETVKGKIREFGTSNRAK >gi|224999998|gb|ACJC01000002.1| GENE 2 1135 - 1656 564 173 aa, chain + ## HITS:1 COG:no KEGG:SERP1733 NR:ns ## KEGG: SERP1733 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 173 1 173 173 320 100.0 2e-86 MSKILNTQLTGIFNRLEKQELDIQMAAQCLIQAIGGEGHVYIKGYDDLKFYESFILQSHE KLASSLPLEDLQNFNDIDTTDRVLLFSPYYTSEVESDVLQLIDLDVDLVLICNNPKRDDF PNHLIHYVNLSTPRPIVYTEDYDKIIQPHPMALNYIYYDIYTQMIEMTRDLDL >gi|224999998|gb|ACJC01000002.1| GENE 3 1882 - 3489 1708 535 aa, chain - ## HITS:1 COG:SA1929 KEGG:ns NR:ns ## COG: SA1929 COG0504 # Protein_GI_number: 15927701 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Staphylococcus aureus N315 # 1 534 1 534 536 1021 91.0 0 MTKFIFVTGGVVSSLGKGITAASLGRLLKDRGLKVTIQKFDPYLNVDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTAGKVYSHVLKKERRGDYLGGTVQVIPHITN EIKERLLLAGESTNADVVITEIGGTTGDIESLPFLEAIRQIRSDLGRENVMYVHCTLLPY IKAAGEMKTKPTQHSVKELRGLGIQPDLIVVRTEYEMTQDLKDKIALFCDIKKESVIECR DADSLYEIPLQLSKQNMDDIVIQRLQLNAKYETQLDEWKHLLDTVNHLDGKITIGLVGKY VSLQDAYLSVVESLKHAGYPFKKDVVVKWIDSSEVNDHNVEAYLSDVDGILVPGGFGFRA SEGKIAAIRYARENNIPFFGICLGMQLATVEFARHVLGYEGAHSAELDPSTPYPIIDLLP EQKDIEDLGGTLRLGLYPCHIKEGTLAEKIYNENDIEERHRHRYEFNNEFREQLESNGMV FSGTSPDGRLVEIIEIPKNDFFIACQFHPEFLSRPNRPQPIFKSFVEAALNYQQK >gi|224999998|gb|ACJC01000002.1| GENE 4 3826 - 4362 833 178 aa, chain - ## HITS:1 COG:SA1930 KEGG:ns NR:ns ## COG: SA1930 COG3343 # Protein_GI_number: 15927702 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Staphylococcus aureus N315 # 1 154 1 154 176 164 81.0 9e-41 MKIQDYTKEMVDEKSFIDMAYTLLNDKQTTMNLYDIIDEFKSLGGYEYEDIENRIVQFYT DLNTDGRFLNVGENLWGLRDWYSVDDIEEKIAPTIQKFDILDDEDEEDQNLKLLGDDDAD EDDDIPAQTDDQETLDESDNDEDDVEMNDTDIVIDEDEDEDIAEGEEEAFEDAEDFND >gi|224999998|gb|ACJC01000002.1| GENE 5 4473 - 5333 1006 286 aa, chain - ## HITS:1 COG:SA1931 KEGG:ns NR:ns ## COG: SA1931 COG0454 # Protein_GI_number: 15927703 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 7 286 7 286 286 389 68.0 1e-108 MFIKRDFDDITVQVYEEKYRNALNQFELSERQQIYSSLPQTVLDDALKDENRIANVALNK EGKVVGFFVLHRYYQHEGYDTPNNVVYVRSLSVNEKFQGHGYGTKMMMFLPEYVQALFPD FTHLYLVVDAENQSAWNVYERAGFMHTATKEEGPIGKERLYYLDLDSKHVSSLRLKEGES AYSDDIHVINLLKDDVKVGFIALEQNDNKMNISAIEVNKQNRNEGIAESALRQLATYIRK HFENIEVLSITLYGERNELKPLCLNSNFVAIEETEDYTRFEKYINY >gi|224999998|gb|ACJC01000002.1| GENE 6 5636 - 6433 823 265 aa, chain + ## HITS:1 COG:SA1932 KEGG:ns NR:ns ## COG: SA1932 COG5146 # Protein_GI_number: 15927704 # Func_class: H Coenzyme transport and metabolism # Function: Pantothenate kinase, acetyl-CoA regulated # Organism: Staphylococcus aureus N315 # 1 265 1 265 267 384 76.0 1e-106 MKIGIDAGGTLIKIVQEHDNRRYYRTELTTNIQKVIDWLNNEEIETLKLTGGNAGVIADQ IHQSPEIFVEFDASSKGLEILLDEQGHQIEHYIFANVGTGTSFHYFDGKEQQRVGGVGTG GGMIQGLGYLLSNITDYKELTNLAQNGDRDAIDLKVKHIYKDTEPPIPGDLTAANFGNVL HHLDNQFTSANKLASAIGVVGEVITTMAITLAREYKTKHVVYIGSSFNNNQLLREVVENY TVLRGFKPYYIENGAFSGAIGALYL >gi|224999998|gb|ACJC01000002.1| GENE 7 6655 - 7320 743 221 aa, chain - ## HITS:1 COG:no KEGG:SERP1738 NR:ns ## KEGG: SERP1738 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 221 1 221 221 397 98.0 1e-109 MSYKYEAFFKDILINEYIYFASKNKKLIRIQHENLPFIAMWTDENVAESYLLHHSIEYDK IIRADIDRFVTYEMDEIFDPGDKVLVNVNNGEEGNIVDIVKMTDELMSELDDIRMREFVK DVAKYDEVYGLTNKGEKNFIMISDDDHNKPHIMPVWSIKSRARKVRDQDFEECDLIEIEG KVFSEWLDKLRDDNKAVAIDLKSGVVGTVVSAQKLSNEATF >gi|224999998|gb|ACJC01000002.1| GENE 8 7494 - 8684 1056 396 aa, chain - ## HITS:1 COG:no KEGG:SE1730 NR:ns ## KEGG: SE1730 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 396 1 396 396 774 98.0 0 MNNKVNGPFLTLSDLYNDDIVYTSRPSYVSNPWLKPDEHQSNFLTGRELLIANRFPVIVH EASVTNKLEQLFNIVGREIPPHTYKFNNQETYESLIRNLALHHGKKIYFQYIHDEDILPK EYYALDKDVFVALNNKARIPEWTNNKYLPQREIVSIKDFESRIQTWSYPFVIKPGDDLPT AGGYGVMICYNDTDLDKAITRINNASAETEHLIIEQKINAVNNYCVQFAYSDDIGIKYLG TAQQLTNDYGFYNGNENVNDVPQNVIDAGREIMEIGVSKGFFGVAGFDLLVDDKNDVYAI DLNFRQNGSTSMLLLAKDLTHGYHKFYSYFSNGDNTKFYNAILKYVELGVLYPLSYYDGD WYGKNQVNSRFGCIWHGENKELINRYEQQFILEAGL >gi|224999998|gb|ACJC01000002.1| GENE 9 8684 - 9868 1500 394 aa, chain - ## HITS:1 COG:SA1935 KEGG:ns NR:ns ## COG: SA1935 COG1473 # Protein_GI_number: 15927707 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 1 394 1 394 394 675 85.0 0 MHNKQKILDFIENNKYDYVEISHRIHERPELGNEEIFASRTLIDQLRANRFEIETDIAGH ATGFIATYDSDMTGPVIGFLAEYDALPGLGHACGHNIIGTASVLAAVALKEVVDEIGGKV VVLGCPAEEGGENGSAKASYVKAGVIDEIDVALMIHPGNETYRTINTLAVDVLDIKFYGR SAHASENADEALNALDAMISYFNGIAQLRQHIKKGQRVHGVILDGGKAANIIPDFTHARF YTRATSRRELDVLTEKVNQIARGAAIQTGCDFEFGPIQNGVNEFIKAPKLDDLFEKYATE LGEEVIDDDFGYGSTDTGNVSHVVPTIHPHIKIGSRNLVGHTHRFREAAASLQGDQALIR GAKILALMGLELIENKPLLDEIIEEHTHIKGHVK >gi|224999998|gb|ACJC01000002.1| GENE 10 10095 - 10565 597 156 aa, chain + ## HITS:1 COG:SA1936 KEGG:ns NR:ns ## COG: SA1936 COG1854 # Protein_GI_number: 15927708 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Staphylococcus aureus N315 # 1 156 1 156 156 300 91.0 6e-82 MTKMNVESFNLDHTKVVAPFIRLAGTMEGLNGDVIHKYDIRFKQPNKEHMDMPGLHSLEH LMAENIRNHTDKVVDLSPMGCQTGFYVSFINHDDYDDVLNIIDQTLHDVLNASEVPACNE VQCGWAASHSLEGAKTIAQAFLDKREQWNDIYGEGK >gi|224999998|gb|ACJC01000002.1| GENE 11 10726 - 11076 411 116 aa, chain - ## HITS:1 COG:SA1937 KEGG:ns NR:ns ## COG: SA1937 COG4270 # Protein_GI_number: 15927709 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 116 1 116 116 148 72.0 3e-36 MKVLRFLLGLAFGTAGVLHFTRERQFRNIVPDYLPLQKTAVLVTGVIEIFFGIMLLIKRP ASWLKKGINLFLLAVFPANIYMARKGLPLGDKELPKWALYSRLPLQFVLIKAIKKL >gi|224999998|gb|ACJC01000002.1| GENE 12 11073 - 12263 1473 396 aa, chain - ## HITS:1 COG:SA0134 KEGG:ns NR:ns ## COG: SA0134 COG1015 # Protein_GI_number: 15925843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Staphylococcus aureus N315 # 1 391 1 391 392 682 84.0 0 MTTPFKRIHLIVMDSVGIGEGPDAAAFNDEGSHTLKHTLEGFKQKLPHLEQLGLGNIAPL PVVSKVTHPGAFYTKLSEASVGKDTMTGHWEIMGLNIMQPFKVYPNGFPAELVKEIESMT GRKVVANRPASGTQIIDEWGEHQMKTGDLIVYTSADPVLQIAAHEDVIPLEELYEICEKV RELTKDPKYLIGRIIARPYVGEPGNFTRTSNRHDYALKPFGRTVMNSLKDNGYDVIAIGK INDIYDGEGVTEAIRTKNNMDGMDQLIEVVKKDFEGISFLNLVDFDALYGHRRDKEGYAQ AIKDFDLRLPELMNHLREDDLVIITADHGNDPIAKGTDHTREYIPLLMFSPKIKDYHELS QDTTFSSIGVTIADNFNVELPKYGKSYLKEMGVEHQ >gi|224999998|gb|ACJC01000002.1| GENE 13 12276 - 13577 1444 433 aa, chain - ## HITS:1 COG:SA1938 KEGG:ns NR:ns ## COG: SA1938 COG0213 # Protein_GI_number: 15927710 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Staphylococcus aureus N315 # 1 433 14 446 446 639 78.0 0 MRMIDIIEKKRDGKSLTREEIEFFVNGYTRGEVPDYQASSLAMAIFFQDMNDEERAALTM SMVNSGERIDLSDINGIKVDKHSTGGVGDTTTLVLAPLVAAVGVPVAKMSGRGLGHTGGT IDKLESVKGFNVEISEKDFIKLVNDNQVAVIGQSGNLTPADKKLYALRDVTGTVNSIPLI ASSIMSKKIAAGADAIVLDVKTGSGAFMKTLDDAEALAHAMVRIGNNVGRNTMAIISDMS QPLGNAVGNALELKEAIATLKGNGPKDLTELVLTLGSQMVVLAEQAESLDEARQMLVDAI KTGKALNKFKTFLSNQGGDDSIVDSPEKLPSAKYQVEFKAKKDGFITEIIANEIGVASMM LGAGRQTKEDVIDLGVGIVLNKKVGEHVEKDENILTIHTNTKKIDDILNKLDNSITIDSK GEAPTLIHKIITE >gi|224999998|gb|ACJC01000002.1| GENE 14 13611 - 14273 853 220 aa, chain - ## HITS:1 COG:SA1939 KEGG:ns NR:ns ## COG: SA1939 COG0274 # Protein_GI_number: 15927711 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Staphylococcus aureus N315 # 1 220 1 220 220 313 78.0 1e-85 MNKAKLIDHTLLKPDSTKEQIDTIINEAKAYQFKSVCVNPTHVQYASEQLKGTDVLVCTV IGFPLGATTTAVKSYETKDAINNGAQEIDMVINIGALKDGRFDEVQNDIEAVVQAANGKT VKVIIETVLLTEKEKIKACQLSEAAGAHFVKTSTGFAGGGATVEDVKLMKDTVGDRLEVK ASGGVRNLEDFNNMIEAGATRIGASAGVQIIQGLESNTDY >gi|224999998|gb|ACJC01000002.1| GENE 15 14480 - 15190 830 236 aa, chain + ## HITS:1 COG:SA1940 KEGG:ns NR:ns ## COG: SA1940 COG0813 # Protein_GI_number: 15927712 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 1 236 1 236 236 428 90.0 1e-120 MTESTPHINPNGVKIAKTVLMPGDPLRAQYIAENFLENVEQFNTVRNMFGYTGTYKGKEV SVMGSGMGIPSIGIYSYELYHFFDVDTIIRVGSCGALQEDVNLYDVIIAQAASTNSNYVD QFNIPGHFAPIADFNLVAKAKKAADEIGAVSHVGNVLSSDTFYNADSTFNDSWKKMGILG IEMESAGLYLNAIHANKKALGIFTVSDHILRDEATSAEERQTSFTQMMEIALEIAE >gi|224999998|gb|ACJC01000002.1| GENE 16 15315 - 15761 447 148 aa, chain - ## HITS:1 COG:SA1941 KEGG:ns NR:ns ## COG: SA1941 COG0783 # Protein_GI_number: 15927713 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Staphylococcus aureus N315 # 1 146 1 146 147 244 85.0 3e-65 MSQQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHTKFEELYNEASQYVDDLAE RILAIGGNPIGTLSECLDKSIVNEAGKHYSAEEMVEELSKDFSKISKQLEQAIEVAGSAS DDVSEDMFIGMQTSVDKHNWMLQSYLGH >gi|224999998|gb|ACJC01000002.1| GENE 17 15948 - 16358 496 136 aa, chain - ## HITS:1 COG:SA1942 KEGG:ns NR:ns ## COG: SA1942 COG3011 # Protein_GI_number: 15927714 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 136 1 136 137 210 67.0 6e-55 MPIIYYDGNCVYCYNYAIWLIQNGLSHKYEFATIKGQIGIQFFENYPDAQNKNSVILQKG NHLEFESQAVATLISSLPNHSKFLGIGLRLIPKPLRDLGYRLFANNRDKMWKTHWHKPTD YEKSFFLDDNEKIKLT >gi|224999998|gb|ACJC01000002.1| GENE 18 16539 - 17915 1304 458 aa, chain - ## HITS:1 COG:no KEGG:SE1740 NR:ns ## KEGG: SE1740 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 458 1 458 458 899 99.0 0 MTEEINYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPTQGYRAFKKAKAGDQVIFYQVQ TDSGLLGIGEIISVQSGAQNKIRVEFKFKETLKPLTTDYLKRSETLDFRMSNMRETLFNQ IRESEFELIVSLGKGKSKIPRYFLLAETEAFEPGKNYTIFTHTFNGIKRNGYHFYTQLEV GDNIIIYNKYQNQSVIGIGEVSKHLHEKPPIPGRTNSTAIEIFYEKDIKPISLGHLNKHS KLKNLYFLQENAKQSIASMSQAQYDAILDMSMNNGIKHPFETVKKAELSTQNAEDDSLKP FVLLVVEQKGEGLKAAEELLQKTNANPVITSGHPDFTEDMLYGKYLPNESGALYYREGFI THLMPKKDKSYLVIDNFNRIDVDIFQTYINVLEGYEVTLPRYNKDGSMIKWSKNKDSFYH FNPNWHIVGITYDSIEKIKQKYSSQFLKYTRIVKVNHD >gi|224999998|gb|ACJC01000002.1| GENE 19 18148 - 18375 178 75 aa, chain - ## HITS:1 COG:no KEGG:SERP1751 NR:ns ## KEGG: SERP1751 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 75 1 75 75 108 100.0 6e-23 MKQFIYISLVCGIISGAGIFLQLPHYPSMMIPRFVAILGIISAAITIRDKEISGMLKLGG IMINIMPLLGSVIAK >gi|224999998|gb|ACJC01000002.1| GENE 20 18431 - 19369 810 312 aa, chain - ## HITS:1 COG:SA1945 KEGG:ns NR:ns ## COG: SA1945 COG1482 # Protein_GI_number: 15927717 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Staphylococcus aureus N315 # 1 312 1 312 312 465 66.0 1e-131 MPLFLKPIFLDKVWGSDNLRQFGYQLPNNHIGECWGISAHPHGKSVIENGIFAGQTLDQV WNNHREMFGDFPSKDFPLMAKIVDAAAPLSIHVHPDDSYAYEHEEGQYGKSECWYIIEAD EGAKITIGTYAKSRDEFEEQLKQGTFEKHLRTIQVQPGDFYFIPAGTIHSIGAGIMAYEV MQSSDISYRIYDYHRKTDNSEERELNIDKALDVINYSNELPNITPQNEVIENHNCTHIVS SDFFTMVKWDISGTLNYMKPREFCLVSVLDGQGKLIVDGDIYEISTGSNFVLTSEDLDSV FEGDFKLIISYI >gi|224999998|gb|ACJC01000002.1| GENE 21 20014 - 20670 930 218 aa, chain - ## HITS:1 COG:SA1946 KEGG:ns NR:ns ## COG: SA1946 COG0702 # Protein_GI_number: 15927718 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 217 1 217 221 298 73.0 5e-81 MSILVIGANGGVGSKLVSQLNEEHVDFTAGVRKEDQVKELENKGIKATLIDVEKNSIDDL KNIFTDYDKVIFSVGSGGSTGADKTIIVDLDGAVKTIKASKEAGIKHYVMVSTYDSRREA FDASGDLKPYTIAKHYADDYLRTSNLNYTIVHPGSLTDDAGTGKIEADLYFDKPGSIPRE DVATVLKEVVTSDGFNNQEFQILSGNHDVKDALKNYES >gi|224999998|gb|ACJC01000002.1| GENE 22 20815 - 21156 296 113 aa, chain + ## HITS:1 COG:SA1947 KEGG:ns NR:ns ## COG: SA1947 COG0640 # Protein_GI_number: 15927719 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 9 108 7 106 106 127 74.0 5e-30 MSGYHINDESNQDTLIKVTHIFKALSDFNRVRIMEFLENGEASVGHISHSLNMTQSNVSH QLKLLKSTYLVKSKRQGQSMIYSIDDRHVSTLLKQAIHHAKHPSEGGISNDKS >gi|224999998|gb|ACJC01000002.1| GENE 23 21143 - 22096 773 317 aa, chain + ## HITS:1 COG:SA1948 KEGG:ns NR:ns ## COG: SA1948 COG1230 # Protein_GI_number: 15927720 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Staphylococcus aureus N315 # 17 311 14 308 325 403 73.0 1e-112 MTNHNHQHHHSHAHGHVHTDNKKVLMFSFIIISLFMLVEIIGGFLANSLALLSDGFHMLS DAISLGVALIAFIYAEKHATKSKTYGYKRFEILAALFNGVTLFIISIIIIIEAIRRFLEP PEVQSKEMFIISVIGLMVNIIVAILMFKGGDTSHNLNMRGAFLHVLGDLFGSVGAIVASL LIWGFNFTLADPLASILVSLIILKSAYGISKSSLNILMEGTPNNIDLNAVIKAISKDERI QNVHDCHVWTISNDMNALSCHAVVPEYLSVQTCETMLKSIESDLLQLNIQHMTIQLETPE HKHDESTLCSGIHEHSH >gi|224999998|gb|ACJC01000002.1| GENE 24 22360 - 23091 817 243 aa, chain - ## HITS:1 COG:MK0804 KEGG:ns NR:ns ## COG: MK0804 COG0639 # Protein_GI_number: 20094241 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Methanopyrus kandleri AV19 # 1 233 3 221 232 73 28.0 3e-13 MKFAVITDIHGNFDALQTVLDDIDSRDDIEKIYNLGDNIGIGHETNKVLDTIFDRDDMEM IAGNHDEAIMSLVNGTPYPEDLKGKFYEHHQWIEGHLDESYYDEINQLPRYIEMTVKGKK ILFIHYEIENDKMSAPIDEQPFAPITKDDEQAISKLFKDKEADLILFGHNHRLHMFDDKS TVYFNPGSVGLNNGSNTVYGIITVNEKGISVERVKLAYNNEEFLAGFEEKQVPAREFIFK NFI >gi|224999998|gb|ACJC01000002.1| GENE 25 23224 - 24375 869 383 aa, chain + ## HITS:1 COG:no KEGG:SERP1758 NR:ns ## KEGG: SERP1758 # Name: not_defined # Def: lytic regulatory protein, putative # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 383 1 383 383 568 92.0 1e-160 MFNYYKSGFQKAKPHNLKLILISLLTFVICYITSNIAFSLVILRAQRLPMLAQLGEPTTK PIISIIFILLILALLFIFVGYPLITGTVYAIQKAINKEKVLFSDLFFAFKKGKYAKSVIL ALITLVLFIIIVLILMLLNKLYNLALSPLFIGLQQSISGYENPMGILITIQIVLLLITGF ISSIFYWFVIIFIINYTTAYTEDSSRKVMSNLKEGFKGIKNGKKTWFKFFIGVLLIGLLA SIINRPLLFGVQYLTSSMSQMVAQTIVIIARIVSIVLRLCLYYILIFGIINYFVKRGDQP VKSKRRHKNKDVNKDTVNDKVDTTLNTSDSKDTEIDKMKDQQTHVQQEKTDIQKNNIDDS IKEKVNENKENITEQSKNLFDKK >gi|224999998|gb|ACJC01000002.1| GENE 26 24692 - 25549 942 285 aa, chain - ## HITS:1 COG:SA1957 KEGG:ns NR:ns ## COG: SA1957 COG0561 # Protein_GI_number: 15927733 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 283 1 283 285 390 69.0 1e-108 MKNIKAIFLDMDGTILHENNKASEYTKQVINQLREQNYKVFLATGRSYSEINQLVPNGFT VDGIISSNGTSGEIHGDNLFRHSLTLEQVQKIVELAKKQHIYYEVFPFESDRISLKEDED WMKEMISTIEPPDAVSQSEWSSRREAIKGKIDWQDTLPDAHFSKIYLFSPNLDKITDFRN HLVKNQSNIGITVSNSSRYNAETMPYHTDKGTGIKEMIDHYGIQQEETLVIGDSDNDRAM FNFGHHTVAMKNARQEIKNLTDDITEYTNEEDGAAHYLKTHLLDN >gi|224999998|gb|ACJC01000002.1| GENE 27 26050 - 27855 2102 601 aa, chain - ## HITS:1 COG:SA1959 KEGG:ns NR:ns ## COG: SA1959 COG0449 # Protein_GI_number: 15927735 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Staphylococcus aureus N315 # 1 601 1 601 601 1008 88.0 0 MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDGTKLFKEKGRIAELRKVADN SDEDGTLGIGHTRWATHGVPNYENSHPHQSTSGRFTLVHNGVIENYEELKAEYLSDVTFS SETDTEVIVQLVDYFSKQGLATEDAFTKVVKLLDGSYALGLLDNNDKDTIYVAKNKSPLL VGVGEGFNVIASDALAMLQTTNQYKEIHDHEIVIVKRDTVEIKDLEGHIQQRDTYTAEID AADAEKGVYDHYMLKEIHEQPAVMRRIIQEYQDEKGNLKIDSEIINDVADADRIYIVAAG TSYHAGLVGKEFIEKWAGVPTEVHVASEFVYNMPLLSEKPLFIYISQSGETADSRAVLVE TNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLAILSQIVAKY HGRETDVDLLRELAKVTTAIETIVDDAPKMEQIATDFLKTTRNAFFIGRTIDYNVSLEGA LKLKEISYIQAEGFAGGELKHGTIALIEDGTPVIGLATQENVNLSIRGNMKEVVARGAYP CMISMEGLNKEGDTYVIPQVHELLTPLVSVVTMQLISYYAALQRDLDVDKPRNLAKSVTV E >gi|224999998|gb|ACJC01000002.1| GENE 28 28486 - 29841 1576 451 aa, chain - ## HITS:1 COG:SA1965 KEGG:ns NR:ns ## COG: SA1965 COG1109 # Protein_GI_number: 15927742 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Staphylococcus aureus N315 # 1 451 1 451 451 806 92.0 0 MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLES ALIAGLISIGAEVMRLGVISTPGVAYLTKEMEAALGVMISASHNPVADNGIKFFGSDGFK LSDDQENEIEQLLDQTNPDLPRPVGEDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVL DGANGSTSSLAPFLFGDLEADTETIGCNPDGYNINEQCGSTHPEKLAETVLETGSDFGLA FDGDGDRIIAVDENGQIVDGDQIMFIIGQEMYKNQELNGNMIVSTVMSNLGFYKALEKEG IQSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVLMDYNTTGDGLLTGVQLASVIKMSGKT LSELASQMKKYPQSLINVRVTDKYRVEENIHVQEIMTKVETEMNGEGRILVRPSGTEPLV RVMVEAATDADAERYAQSIADVVEEKMGLDK >gi|224999998|gb|ACJC01000002.1| GENE 29 29866 - 30801 1098 311 aa, chain - ## HITS:1 COG:SA1966 KEGG:ns NR:ns ## COG: SA1966 COG4856 # Protein_GI_number: 15927743 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 310 1 310 310 362 70.0 1e-100 MLESKWGLRFVALILAVFFFLSVNNVFGNIFNTDDLSQKSSKTIQDVPVDVIYNNKDLHV TKIPENVDVNLTGPQSKLIKIENPEDLKVVVDLSGKKAGKYQKKYQVKGIDSGINYQIKP EVAHINLENKITRVMHVQPDISSNSLDPKYKISKQSISPETVKVTGGEQQLKNIAYLKAT FKNSSKVNKDTNDVADVSAFDKQLNKLNVSINPNEVNLKVTVEPFSKMVKVRTKTTGKLN ENKELDSVKLEDKEVEIFGNRDELQNINEITAEVDIDGISESTEKTVSFNLPKDVTKVNP KETKAYINVKN >gi|224999998|gb|ACJC01000002.1| GENE 30 30802 - 31611 689 269 aa, chain - ## HITS:1 COG:SA1967 KEGG:ns NR:ns ## COG: SA1967 COG1624 # Protein_GI_number: 15927744 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 267 1 268 269 462 92.0 1e-130 MDFSNFFQNLSTIKIITSLLDLLIVWYVLYLLITVFKGTKAIQLLKGIVVIVIGQQISKI LNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGNFLKRYTNTYSRDEEKLIQSV SKAVQYMAKRRIGALIVFEKETGLQDYIETGIPMNSDISQELLTNVFIPNTPLHDGAMII QGSKIAVAASYLPLSDSVKISKSLGTRHRAAVGISEVSDAFTVVVSEETGDISVTFDGKL RRDISKDVFEELLAEHWFGAHFQKKGVNS Prediction of potential genes in microbial genomes Time: Sun May 29 07:21:48 2011 Seq name: gi|224999997|gb|ACJC01000003.1| Staphylococcus epidermidis W23144 contig00004, whole genome shotgun sequence Length of sequence - 671 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 539 602 ## COG4536 Putative Mg2+ and Co2+ transporter CorB Predicted protein(s) >gi|224999997|gb|ACJC01000003.1| GENE 1 3 - 539 602 178 aa, chain + ## HITS:1 COG:SA0780 KEGG:ns NR:ns ## COG: SA0780 COG4536 # Protein_GI_number: 15926508 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorB # Organism: Staphylococcus aureus N315 # 1 166 164 329 346 268 77.0 3e-72 TLLNIAGREGAFNEIENTRLQNVMDFEQLKVKDVDTTPRINVVAFSKDVTYDEAYDTVMN NPYTRYPVYDEDIDDIIGVFHSKYLLAWSKHKEDAITNYASSPLFVNEHNRAEWVLRKMT VSRKHLAIVLDEYGGTDAIVSHEDLIEELLGMDIEDEMDREEENKLKHQKFPQSMMHR Prediction of potential genes in microbial genomes Time: Sun May 29 07:22:01 2011 Seq name: gi|224999996|gb|ACJC01000004.1| Staphylococcus epidermidis W23144 contig00005, whole genome shotgun sequence Length of sequence - 38711 bp Number of predicted genes - 38, with homology - 38 Number of transcription units - 7, operones - 7 average op.length - 5.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 234 - 293 6.6 1 1 Op 1 . + CDS 426 - 959 447 ## PROTEIN SUPPORTED gi|116490772|ref|YP_810316.1| acetyltransferase 2 1 Op 2 4/0.000 + CDS 988 - 2328 1068 ## COG1982 Arginine/lysine/ornithine decarboxylases 3 1 Op 3 4/0.000 + CDS 2332 - 2943 588 ## COG0125 Thymidylate kinase 4 1 Op 4 2/0.000 + CDS 2977 - 3306 516 ## COG3870 Uncharacterized protein conserved in bacteria + Term 3323 - 3370 4.5 + Prom 3325 - 3384 8.2 5 2 Op 1 7/0.000 + CDS 3611 - 4537 1072 ## COG0470 ATPase involved in DNA replication 6 2 Op 2 5/0.000 + CDS 4539 - 5342 783 ## COG1774 Uncharacterized homolog of PSP1 7 2 Op 3 4/0.000 + CDS 5359 - 5706 313 ## COG4467 Uncharacterized protein conserved in bacteria + Prom 5715 - 5774 6.3 8 2 Op 4 6/0.000 + CDS 5802 - 6527 730 ## COG4123 Predicted O-methyltransferase 9 2 Op 5 4/0.000 + CDS 6520 - 6768 254 ## COG2827 Predicted endonuclease containing a URI domain 10 2 Op 6 1/0.000 + CDS 6770 - 7609 751 ## COG0313 Predicted methyltransferases + Prom 7738 - 7797 6.6 11 2 Op 7 8/0.000 + CDS 7821 - 9791 2076 ## COG0143 Methionyl-tRNA synthetase 12 2 Op 8 3/0.000 + CDS 9819 - 10589 867 ## COG0084 Mg-dependent DNase + Term 10623 - 10668 -0.9 + Prom 10633 - 10692 7.5 13 2 Op 9 7/0.000 + CDS 10796 - 11341 560 ## COG1658 Small primase-like proteins (Toprim domain) 14 2 Op 10 2/0.000 + CDS 11342 - 12232 804 ## COG0030 Dimethyladenosine transferase (rRNA methylation) + Prom 12251 - 12310 7.5 15 2 Op 11 2/0.000 + CDS 12332 - 12595 306 ## COG4466 Uncharacterized protein conserved in bacteria + Term 12658 - 12700 6.2 + Prom 12903 - 12962 7.4 16 3 Op 1 4/0.000 + CDS 12990 - 13838 779 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase 17 3 Op 2 3/0.000 + CDS 13853 - 14677 567 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 18 3 Op 3 2/0.000 + CDS 14699 - 15079 404 ## COG0251 Putative translation initiation inhibitor, yjgF family 19 3 Op 4 4/0.000 + CDS 15139 - 15447 510 ## COG2088 Uncharacterized protein, involved in the regulation of septum location + Term 15476 - 15519 4.6 20 3 Op 5 11/0.000 + CDS 16058 - 17413 1510 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) + Term 17437 - 17485 1.3 + Prom 17443 - 17502 6.4 21 3 Op 6 9/0.000 + CDS 17558 - 18523 1107 ## COG0462 Phosphoribosylpyrophosphate synthetase + Prom 18532 - 18591 2.8 22 3 Op 7 22/0.000 + CDS 18681 - 19352 1106 ## PROTEIN SUPPORTED gi|242241586|ref|ZP_04796031.1| 50S ribosomal protein L25/general stress protein + Term 19408 - 19453 10.7 + Prom 19402 - 19461 5.7 23 4 Op 1 7/0.000 + CDS 19605 - 20177 604 ## COG0193 Peptidyl-tRNA hydrolase 24 4 Op 2 2/0.000 + CDS 20183 - 23683 3551 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 25 4 Op 3 4/0.000 + CDS 23673 - 25214 1246 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 26 4 Op 4 3/0.000 + CDS 25211 - 26401 1440 ## COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain 27 4 Op 5 5/0.000 + CDS 26398 - 26661 468 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 28 4 Op 6 4/0.000 + CDS 26685 - 27086 533 ## COG2919 Septum formation initiator + Prom 27088 - 27147 3.7 29 4 Op 7 2/0.000 + CDS 27180 - 27581 355 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein + Term 27702 - 27763 10.3 + Prom 27666 - 27725 6.0 30 5 Op 1 10/0.000 + CDS 27853 - 29151 1385 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control 31 5 Op 2 11/0.000 + CDS 29151 - 29690 662 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase + Prom 29711 - 29770 8.4 32 5 Op 3 1/0.000 + CDS 29965 - 32067 1385 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 + Term 32083 - 32135 9.2 + Prom 32204 - 32263 9.8 33 6 Op 1 3/0.000 + CDS 32322 - 33203 1155 ## COG1281 Disulfide bond chaperones of the HSP33 family + Term 33311 - 33364 -0.6 + Prom 33424 - 33483 5.7 34 6 Op 2 . + CDS 33540 - 34472 978 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Term 34525 - 34557 -0.9 + Prom 34513 - 34572 8.9 35 7 Op 1 15/0.000 + CDS 34786 - 35586 809 ## COG0294 Dihydropteroate synthase and related enzymes 36 7 Op 2 17/0.000 + CDS 35564 - 35929 445 ## COG1539 Dihydroneopterin aldolase 37 7 Op 3 1/0.000 + CDS 35930 - 36409 554 ## COG0801 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase + Prom 36576 - 36635 7.1 38 7 Op 4 . + CDS 36745 - 38232 1590 ## COG1190 Lysyl-tRNA synthetase (class II) + Term 38309 - 38352 6.1 Predicted protein(s) >gi|224999996|gb|ACJC01000004.1| GENE 1 426 - 959 447 177 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116490772|ref|YP_810316.1| acetyltransferase [Oenococcus oeni PSU-1] # 1 163 1 163 167 176 49 1e-43 MTLIIRALEKTDLSFIHHLNNEYSIMSYWFEEPYQSLSELENLYTKHILDETERRFIVEE GSTSVGVVELLEINFIHRTCEVLIIIDPQYANNGYAKKAFKMAIDYAFLVLNMNKVYLYV DIKNEKAVHIYQSNNFEIEGTLKEHFYTRGEYRDCYVMGLLKRNWVNKNDDDLSHIR >gi|224999996|gb|ACJC01000004.1| GENE 2 988 - 2328 1068 446 aa, chain + ## HITS:1 COG:SA0439 KEGG:ns NR:ns ## COG: SA0439 COG1982 # Protein_GI_number: 15926158 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Staphylococcus aureus N315 # 1 442 1 442 445 518 57.0 1e-147 MKRPIIQKLNRLIEKNAISMHVPGHKNMTIGYLNRLDLAMDMTEITGLDDMHYPEGIILE SMENFRKHKNYDAFLLVNGTTSGILSVIQAFSTRKGKYLISRNVHKSVFHGLDITQQQAT ITKTDISKKTNQYVKPKIIQDKNQYYKLAICTYPNYYGETFEISQYIKQLHHRGVPILVD EAHGAHFGLDGFPESSMNFNADYVVQSYHKTLPALTMGSVLYIHKDAPLRQQVIDYLTYF QTSSPSYLIMSSLELANKFYKEYDSALFYQRRKMLIDLLINIGFTVIEPEDPLKLVVSFE GVTGYDVQKWFEEKEIYVELADMYQVLLVLPLWHEGDKFPFKLLIEKIREINVPKKCTRD IKSFNFMTDFSEYKTVHFQNTKEVSIKKAEGKVLAQHIVPYPPGIPVMFKGEVVTSHMID LLNKYDKQNIKVEGLNHKKILIIKDE >gi|224999996|gb|ACJC01000004.1| GENE 3 2332 - 2943 588 203 aa, chain + ## HITS:1 COG:SA0440 KEGG:ns NR:ns ## COG: SA0440 COG0125 # Protein_GI_number: 15926159 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Staphylococcus aureus N315 # 1 203 1 203 205 291 71.0 6e-79 MSTFITFEGPEGAGKTSVIKEVSERLAKEYDIVTTREPGGVLTSEEIRRIVLDGESIDIR TEAMLFAASRREHLVEKIIPSLQAGKIVLCDRYIDSSLAYQGYARGIGIKEVKLLNEFAI NGLYPDLTIYLDVDAEIGRQRILKNNREQNRLDKEDKVFHEKVIEGYHKVISDNPHRFIK VNANHSLDKVVEETYQSIIKCLK >gi|224999996|gb|ACJC01000004.1| GENE 4 2977 - 3306 516 109 aa, chain + ## HITS:1 COG:SA0441 KEGG:ns NR:ns ## COG: SA0441 COG3870 # Protein_GI_number: 15926160 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 109 1 109 109 206 92.0 7e-54 MKMIIAIVQDQDSQELSDQLVKNNFRATKLATTGGFLRAGNTTFLCGVKDDRVDEVLSVI DNTCGNRDQLVSPITPMGGSADSYIPYPVEVEVGGATVFVMPIEAFHQF >gi|224999996|gb|ACJC01000004.1| GENE 5 3611 - 4537 1072 308 aa, chain + ## HITS:1 COG:SA0442 KEGG:ns NR:ns ## COG: SA0442 COG0470 # Protein_GI_number: 15926161 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Staphylococcus aureus N315 # 1 307 1 307 308 454 77.0 1e-127 MDEQQQLANAYHSNKLSHAYLFEGDDAQTMKRVAIHFTKLILCNNSNQCELKVDTFNHPD FSYVSSDENTIKKEQIEQLVHHMNQLPIEGQYKVYIIEDFEKLTVQGENSILKFLEEPPD NTIAILLSTKPEQILDTIHSRCQHVYFKPIDKRQFIERLVEMSVARPVAEMLSTYTTQIE AASSLNEEFDLVTLRKSIIRWCQLILSNKAMALIGVIELLKQAKNRRLQLLTLSAVNGFF EDIMHAKVEMDNYYTFSDLTVEIENYANQLTFNQLILMYDQITEAHKKLNQNVNPTLVFE QIVIKGVI >gi|224999996|gb|ACJC01000004.1| GENE 6 4539 - 5342 783 267 aa, chain + ## HITS:1 COG:SA0443 KEGG:ns NR:ns ## COG: SA0443 COG1774 # Protein_GI_number: 15926162 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Staphylococcus aureus N315 # 58 267 2 211 211 352 82.0 3e-97 MPNVVGVQFQKAGKLEYYAPNQLDVEVGDWVVVQSKRGIEIGHVKFPLREVDVEDVTLPL KNIIRKMNEDDQETYYRNERDANDALELCKKVVKDQQLDMRLVNCEYTLDKSKVIFNFTA DDRIDFRKLVKVLAQNLKTRIELRQIGVRDEAKLLGGIGPCGRSLCCSTFLGDFEPVSIK MAKDQNLSLNPTKISGACGRLMCCLKYENDYYEEARTQLPDVGDMIQTPDGHGKVIGLNI LDISMQVKIEGLEQPLEYKMEEIEVLN >gi|224999996|gb|ACJC01000004.1| GENE 7 5359 - 5706 313 115 aa, chain + ## HITS:1 COG:SA0444 KEGG:ns NR:ns ## COG: SA0444 COG4467 # Protein_GI_number: 15926163 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 115 8 122 122 129 62.0 1e-30 MNRNELFERLMKLEHHVEQLTTDMSELKDLTVELVEENVALQVENENLKRLMNKTEESVE THLDKDNYKHVKTPSPSKDNLAMLYREGFHICKGELFGKHRHGEDCLLCLNVLSD >gi|224999996|gb|ACJC01000004.1| GENE 8 5802 - 6527 730 241 aa, chain + ## HITS:1 COG:SA0445 KEGG:ns NR:ns ## COG: SA0445 COG4123 # Protein_GI_number: 15926164 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Staphylococcus aureus N315 # 1 241 1 241 241 352 71.0 5e-97 MLEDNERVDHLIKEGYEIIQNDEVFSFSTDALLLGYLTEVRKNDKVMDLCSGNGVIPLLL AAKSTQPIEGIEIQEQLVSMARRSFKLNDLNDRLTMHRMDLKDVYQTFQPAQYTLVTCNP PYFKMNQNHQHQKEAHKIARHEIMCNLKDCIKAARHLLKEGGRFIMVHRAERLMDVLTEL RHGKIEPKTLTLVYSKHDKPAQTIVVEGRKGGNQGLDIRNPLYIYNEDGSYSDEMKGIYY G >gi|224999996|gb|ACJC01000004.1| GENE 9 6520 - 6768 254 82 aa, chain + ## HITS:1 COG:SA0446 KEGG:ns NR:ns ## COG: SA0446 COG2827 # Protein_GI_number: 15926165 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Staphylococcus aureus N315 # 1 81 1 81 82 115 82.0 2e-26 MDKHFVYIVKCNDGSLYTGYAKDVNARIIKHNNGKGAKYTKIRRPVELVYQETYTTKSEA LKREYEIKTYTRQQKLKMIQEG >gi|224999996|gb|ACJC01000004.1| GENE 10 6770 - 7609 751 279 aa, chain + ## HITS:1 COG:SA0447 KEGG:ns NR:ns ## COG: SA0447 COG0313 # Protein_GI_number: 15926166 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Staphylococcus aureus N315 # 1 278 1 278 279 397 69.0 1e-110 MTTLYLVGTPIGNLGDITFRAIETLRKVDVIACEDTRVTRKLCNHYEIQTPLKSYHEHNK EQQTDYLIKQLQTGLNIALVSDAGLPLISDPGYELVVEARKNNINIETVPGPNAGLTALM SSGLPSFTYTFLGFLPRKEKEKIEVLDDRMFQNSTLILYESPYRVTDTLKAIAKIDSQRR ITVGRELTKKFEQVLTLKVDDMLELINQDRLPLKGEFVILIEGALPKSGESWFENYTVEE HVDYYIETKQVKTKKAIKLVATDRHMKTGDVYNIYHNID >gi|224999996|gb|ACJC01000004.1| GENE 11 7821 - 9791 2076 656 aa, chain + ## HITS:1 COG:SA0448_1 KEGG:ns NR:ns ## COG: SA0448_1 COG0143 # Protein_GI_number: 15926167 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 551 1 552 552 1013 88.0 0 MAKDTFYITTPIYYPSGNLHIGHAYSTVAGDVIARYKRMQGYDVRYLTGTDEHGQKIQEK AQKAGKTELEYLDEMISGIKNLWSKLEISNDDFIRTTEERHKQVVEKVFERLLKQGDIYL GEYEGWYSVPDETYYTESQLVDPVYENGKIVGGKSPDSGHEVELVKEESYFFNINKYTDR LLEFYDENPDFIQPPSRKNEMINNFIKPGLEDLAVSRTSFDWGVRVPSNPKHVVYVWIDA LVNYISSLGYLSDDETLFNKYWPADIHLMAKEIVRFHSIIWPILLMALDLPLPKKVFAHG WILMKDGKMSKSKGNVVDPNVLIDRYGLDATRYYLMRELPFGSDGVFTPEAFVERTNYDL ANDLGNLVNRTISMINKYFHGELPAYQGPKHELDEKMEAMALETVKSFNDNMESLQFSVA LSTVWKFISRTNKYIDETQPWVLAKDENQREMLGNVMAHLVENIRFATILLQPFLTHAPR EIFKQLNINNPDLYQLDSLQQYGMLSEAITVTEKPTPIFPRLDTEAEIAYIKESMQPPKS IKQSDEPGKEQIDIKDFDKVEIKAATIIDAENVKKSEKLLKIKVDLDNEQRQIVSGIAKF YRPEDIIGKKVAVVTNLKPAKLMGQKSEGMILSAEKDGVLTLISLPSAIPNGAVIK >gi|224999996|gb|ACJC01000004.1| GENE 12 9819 - 10589 867 256 aa, chain + ## HITS:1 COG:SA0449 KEGG:ns NR:ns ## COG: SA0449 COG0084 # Protein_GI_number: 15926168 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Staphylococcus aureus N315 # 1 256 1 256 257 464 85.0 1e-131 MLIDTHVHLNDEQYDEDLNEVISRAREAGVDRMFVVGFDTPTIERTMELIDKYDFIYGII GWHPVDAIDCTDERLEWIESLSKHPKIIGIGEMGLDYHWDKSPSDVQKEVFKKQIALAKR VQLPIIIHNREATQDCIDILIEEHAEEVGGIMHSFSASPEIADVVINKLNFYVSLGGPVT FKNAKQPKEVAKHVPMDRLLCETDAPYLSPHPYRGKRNEPERVTLVAQQIADLRGMTYEE VCRQTTENAERLFNLN >gi|224999996|gb|ACJC01000004.1| GENE 13 10796 - 11341 560 181 aa, chain + ## HITS:1 COG:SA0450 KEGG:ns NR:ns ## COG: SA0450 COG1658 # Protein_GI_number: 15926169 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Staphylococcus aureus N315 # 1 178 1 178 178 261 80.0 4e-70 MKINEFIVVEGKDDTERVKSAVDCDTIETNGSAIDTYTLEVIQHAQQTRGVIVLTDPDFP GDKIRNTIREHVSGVKHAYVDREKAKSKRGKIGIEHANIKDIQEALMHVSSPLEEAKETI DKSVLIDLGLIIGKDARHRRNILGRKLHIGHSNGKQLLKKLNAFGYTEDDVRKALFEEEE N >gi|224999996|gb|ACJC01000004.1| GENE 14 11342 - 12232 804 296 aa, chain + ## HITS:1 COG:SA0451 KEGG:ns NR:ns ## COG: SA0451 COG0030 # Protein_GI_number: 15926170 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Staphylococcus aureus N315 # 1 296 2 297 297 488 85.0 1e-138 MEYKDIATPSRTRALLDQYGFNFKKSLGQNFLIDVNIINKIIEASHIDCATGVIEVGPGM GSLTEQLAKNAKKVMAFEIDQRLIPVLKDTLSPYDNVTIINEDILKADIAKAVATHLQDC DKIMVVANLPYYITTPILLNLMQQDVPIDGFVVMMQKEVGERLNAHVGTKAYGSLSIVAQ YYTETSKVLTVPKTVFMPPPNVDSIVVKLMQRQEPLVQVDDEEAFFKLAKAAFAQRRKTI NNNYQNFFKDGKKNKETIRQWLESAGIDPKRRGETLTIQDFATLYEQKKKFSELTN >gi|224999996|gb|ACJC01000004.1| GENE 15 12332 - 12595 306 87 aa, chain + ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 87 1 87 87 157 93.0 6e-39 MPKSILDIKNSIDCHLGNRIVLKANGGRKKTIERSGVLKETYPSVFIVELDQDKHNFERV SYTYTDVLTENVQVSFEEDNHQEAVAH >gi|224999996|gb|ACJC01000004.1| GENE 16 12990 - 13838 779 282 aa, chain + ## HITS:1 COG:SA0453 KEGG:ns NR:ns ## COG: SA0453 COG1947 # Protein_GI_number: 15926172 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Staphylococcus aureus N315 # 1 282 1 282 282 462 75.0 1e-130 MIYETAPAKINFTLDTLFKRDDGYHEIEMVMTTVDLNDRLSFEKRTDKKIVVDIEHNYVP NDNKNLAYKAADLMFERFNINEGVTISIDKDIPVSAGLAGGSADAAATMRGLNRLFGLGQ SLDDLAALGIQIGTDIPFCIYNQTAVCTGRGEQVTFLKRPPSAWVVLAKPNIGISSPDVF KALDLTEEHIVHNEKCKQALENNDYHLLCNSLSNRLEPVSMAMHPDIKKIKDNMLQCGAD GALMSGSGPTVYGLAQKERQAKNIYNAVNGCCNEVYLVRLLG >gi|224999996|gb|ACJC01000004.1| GENE 17 13853 - 14677 567 274 aa, chain + ## HITS:1 COG:SA0454 KEGG:ns NR:ns ## COG: SA0454 COG0503 # Protein_GI_number: 15926173 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Staphylococcus aureus N315 # 1 274 1 274 274 464 94.0 1e-131 MRYKRSERIVFMTQYLMNHPNKLIPLTYFVKKFKQAKSSISEDVQIIKNTFQNEKLGTII TTAGASGGVTYKPMMSKSEATEVVNEVIAQLQEKDRLLPGGYLFLSDLVGNPSLLNRVGK LIASIYMNEELDAVVTIATKGISLANAVANVLNLPVVVIRKDNKVTEGSTVSINYVSGSS RKIETMVLSKRTLAENSNVLVVDDFMRAGGSINGVMNLMNEFKAHVKGVSVLVESKEVKQ RLIEDYTSLVRLSDVDEYNQEFKVEPGNSLSKFS >gi|224999996|gb|ACJC01000004.1| GENE 18 14699 - 15079 404 126 aa, chain + ## HITS:1 COG:SA0455 KEGG:ns NR:ns ## COG: SA0455 COG0251 # Protein_GI_number: 15926174 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Staphylococcus aureus N315 # 1 126 1 126 126 194 77.0 3e-50 MKIINSDKVPEALGPYSHATVINGFVFTSGQIPLTLDGTIVSDDVQEQTKQVLENLTVVL KEAGSDLNSVVKATIYISDMNDFQQINQIYGNYFVEHQPARSCVEVSRLPKDVKVEIELI GKVKDL >gi|224999996|gb|ACJC01000004.1| GENE 19 15139 - 15447 510 102 aa, chain + ## HITS:1 COG:SA0456 KEGG:ns NR:ns ## COG: SA0456 COG2088 # Protein_GI_number: 15926175 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein, involved in the regulation of septum location # Organism: Staphylococcus aureus N315 # 1 98 9 106 108 169 95.0 1e-42 MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLFVAMPSKRTPDGEFRDI AHPINSDMRQEIQDAVMKVYDETDEVIPDKNATSDNEESDEA >gi|224999996|gb|ACJC01000004.1| GENE 20 16058 - 17413 1510 451 aa, chain + ## HITS:1 COG:SA0457 KEGG:ns NR:ns ## COG: SA0457 COG1207 # Protein_GI_number: 15926176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Staphylococcus aureus N315 # 1 450 1 450 450 672 77.0 0 MQRHAIILAAGKGTRMKSKKYKVLHEVAGKPMVEHVLNNVKQAGVDQIVTIIGHGAESVK DTLGNQSLYSFQDKQLGTAHAVKMAHEHLADKEGTTLVVCGDTPLITYQTLQSLIAHHES TQSQVTVLSASTINPYGYGRIIRNHNGILERIVEEKDADESERAIKEISSGIFAFNNRVL FEKLEQVKNDNAQGEYYLPDVLSLILKDGGKAEVYCTEDFDEIIGVNDRLMLSEAEKALQ QRINRYHMENGVTIIDPSSTFIGTDVKIGIDTTIEPGVRIGGHTTIEEDVWIGQYSEINN STIHSNANIKQSVINDSIVGENTTVGPFAQLRPGSNLGSEVKVGNFVEVKKADIKDGAKV SHLSYIGDAEIGERTNIGCGSITVNYDGANKFKTIVGKDAFIGCNTNLIAPVTVGNHTLI AAGSTITDNIPEDSLALARARQVNKEGYLKK >gi|224999996|gb|ACJC01000004.1| GENE 21 17558 - 18523 1107 321 aa, chain + ## HITS:1 COG:SA0458 KEGG:ns NR:ns ## COG: SA0458 COG0462 # Protein_GI_number: 15926177 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Staphylococcus aureus N315 # 1 321 1 321 321 577 94.0 1e-165 MLNNEYKNSSMKIFSLKGNEPLAQEVADHVGIELGKCSVKRFSDGEIQINIEESIRGCDV FIVQPTSYPVNLHLMELLIMIDACKRASAANINIVVPYYGYARQDRKARSREPITAKLVA NLIETAGANRMIALDLHAPQIQGFFDIPIDHLMGVPILAQHFENDPDINPEECVVVSPDH GGVTRARKLADILKTPIAIIDKRRPKPNVAEVMNIVGDIEGRTAIIIDDIIDTAGTITLA AQALKDKGAKEVYACCTHPVLSGPAKERIENSAIKQLIVTNSIQLEENRKPNNTKELSVA GLIAKAIIRVYERESVSVLFD >gi|224999996|gb|ACJC01000004.1| GENE 22 18681 - 19352 1106 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242241586|ref|ZP_04796031.1| 50S ribosomal protein L25/general stress protein [Staphylococcus epidermidis W23144] # 1 223 1 223 223 430 99 1e-120 MEIRMASLKSIIRQGKQTRSDLKQLRNSGKVPAVVYGYGTKNTSVKVDEVEFIKVIREVG RNGVIDLGVGSKTIKVMVSDYQFDPLKNQITHIDFLAINMSEERTVEVQVQLVGEAVGAK EGGVVEQPLFNLEVTATPENIPETIEVDISELQVNDSLAVSDIKISGDFTIENDPEDSIV TVVPPTDEPSEEEVEAMEGESATEEPEVVGEDKEDDEEENKED >gi|224999996|gb|ACJC01000004.1| GENE 23 19605 - 20177 604 190 aa, chain + ## HITS:1 COG:SA0460 KEGG:ns NR:ns ## COG: SA0460 COG0193 # Protein_GI_number: 15926179 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Staphylococcus aureus N315 # 1 190 1 190 190 337 87.0 1e-92 MKCIVGLGNIGKRFELTRHNIGFEVVDDILERHQFTLDKQKFKGAYTIERLNGEKVIFIE PMTMMNLSGQAVAPLMDYYNVDVEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKM LGTDQFKRIRIGVGRPTNGMSVPDYVLQKFSKEEMIIMEKVIEHSAKAVESFIESSRFDH VMNEFNGEVK >gi|224999996|gb|ACJC01000004.1| GENE 24 20183 - 23683 3551 1166 aa, chain + ## HITS:1 COG:SA0461 KEGG:ns NR:ns ## COG: SA0461 COG1197 # Protein_GI_number: 15926180 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Staphylococcus aureus N315 # 1 1165 3 1167 1168 1877 83.0 0 MIANYISEDKRFQELDEVFGQENILVTGLSPSAKATIIAEKYLKDHKQMLLVTNNLYQAD KIETDILQYVDDSEVYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAQGEKGLFIVPLNG FKKWLTPVDLWKDHQMTIKVGQDIDVDTFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIY PLIGTPVRIELFDTEVDSIRDFDVETQRSNDNINQVEITTASDYIITDEVIQHLQNELKK AYEYTRPKIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMYEKPSTLIDYFQKNAI VVVDEFNRIKETEETLTTEVEDFMSNLIESGNGFIGQGFMKYESFDALLENHAVAYFTLF TSSMQVPLQHIIKFSCKPVQQFYGQYDIMRSEFQRYVHQDYTVVVLVETETKVDRIQSML NEMHIPTVSNIHEDIDGGQVVVTEGSLSEGFELPYMQLVVITERELFKTRQKKQRKRTKT ISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGDTHRDYIKLQYKGTDQLFVPVD QMDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKEREMSVGYQYG QDTAEQSAFEHDFPYELTPDQSKSIDEIKGDMEKARPMDRLLCGDVGYGKTEVAVRAAFK AVMDGKQVAFLVPTTILAQQHYETLLERMQDFPVEIQLVSRFRTAKEIRETKEGLKSGYV DIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKKNVDVLTLTATPIPRTLH MSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYE KREQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLI IEEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFK IAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEESPDAPDIEVELH LDAYLPAEYIQSEQAKIEIYKKLRKVETEEQLFDVKDELIDRFNDYPIEVERLLDIVEIK VHALHAGVELIKDKGKSIQIILSPKATEDINGEELFKQTQPLGRAMKVGVQNNSMNVTLT KSKQWLDSLKFLVRCIEESMAIKDED >gi|224999996|gb|ACJC01000004.1| GENE 25 23673 - 25214 1246 513 aa, chain + ## HITS:1 COG:SA0462 KEGG:ns NR:ns ## COG: SA0462 COG2244 # Protein_GI_number: 15926181 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 4 512 2 508 508 499 61.0 1e-141 MKTKSETAFNGVVILTLALIIVKTLSAIYRIPYQNVLGDDGLYAYQQIYPVVALGVILSM NAIPSAVTQVIGVNRPDEVYTRVMFRLQCIGFIVFILLYMFANMITRWMGDSNLAPMLKM ASFSFILIGVLGVLRGFYQLKQVMTIPAISQVIEQVVRVSLIIVAIIMFSMKHWSIYQAG ALAILASSIGFLGSMLYLLLKKPFKLKLSYRFNTTSIQWKQLFISISIFALSQLIVILWQ VVDSFTIIRLLQHSGIAFKEAITQKGIYDRGASFIQMGLIVTTTFSFVLIPLLTQAIREH NQIHMNRYANASIKITVVISTAACIGLINLLPLMNIVFFKSNHLTLTLSIYMFTVICVSL IMMNIAFLQVLTSIRPIIMGVMIGILSKIILNVILIPFWGIVGASVSTVLSLLLFVIILQ VAVLKYYHFNRISLFIVKLILGMIIMSIVVQTVMLILPSKGRMLGLLELIVSSMIGIVII MMYIVIFNVLGYKEIKHLPFGDKLYQMKRGRRS >gi|224999996|gb|ACJC01000004.1| GENE 26 25211 - 26401 1440 396 aa, chain + ## HITS:1 COG:SA0463 KEGG:ns NR:ns ## COG: SA0463 COG3956 # Protein_GI_number: 15926182 # Func_class: R General function prediction only # Function: Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain # Organism: Staphylococcus aureus N315 # 1 396 1 397 397 575 73.0 1e-164 MTHTITIVGLGNYGIDELPLGIYRFLEKETKVYARTLNHPVINTLKKEIEFESFDSIYEA HDRFEDVYEAIVTSLIALAQSEDIVYAVPGHPRVAETTTVKLLEYSHFNKDISVKVLGGK SFIDDIFEAVDVDPNDGFTLLDGTSLKESALNVRTHTVITQVYSVMIAADLKLTLMERYP DDFNVKIITGSHSDGAHVIECPLYEIDRYDDYFNNLTSLFIPKINEDTLLYQDFDYAVQT IDLLVDNEKGCPWDKVQTHDSLKRYLLEETFELFEAIDNEDDWHMIEELGDILLQVLLHS SIGKKEGYIDIKEIIESLNAKMIRRHPHIFGNAHVTSQEDLKDIWSHAKEKEGKVPRVKF EKVFADHFLKLYDETKNRQFDEEDLKQFLQQGEKNS >gi|224999996|gb|ACJC01000004.1| GENE 27 26398 - 26661 468 87 aa, chain + ## HITS:1 COG:SA0464 KEGG:ns NR:ns ## COG: SA0464 COG1188 # Protein_GI_number: 15926183 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Staphylococcus aureus N315 # 1 76 1 76 87 107 80.0 5e-24 MRLDKYLKVSRLVKRRTLAKEISDQGRVTVNGNVAKAGTDIKENDELIIRFGQKLVTVKV TGLSDHATKENAKGMYDLIKEERINEE >gi|224999996|gb|ACJC01000004.1| GENE 28 26685 - 27086 533 133 aa, chain + ## HITS:1 COG:SA0465 KEGG:ns NR:ns ## COG: SA0465 COG2919 # Protein_GI_number: 15926184 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation initiator # Organism: Staphylococcus aureus N315 # 1 118 1 118 130 135 81.0 1e-32 MNKKVEHIDNQYTSQENKKKQRQKMKMRVVRRRIALFGGILLAIILILLVLLVIQRHSND QDSVERKEKETEFQKQQDEEIALKEKLNNLNDKDYIEKIARDDYYLSNKGEVIFRLPDDK KSSQSKTSNEKGN >gi|224999996|gb|ACJC01000004.1| GENE 29 27180 - 27581 355 133 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 133 1 133 134 141 52 7e-33 MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKV LSIADDGKISLSIKKAKDRPRKPRHNKANHGKPVQKTEDFEKKLSNFLKDSEDKLTSIKR QTESRRGGKGSRR >gi|224999996|gb|ACJC01000004.1| GENE 30 27853 - 29151 1385 432 aa, chain + ## HITS:1 COG:SA0467 KEGG:ns NR:ns ## COG: SA0467 COG0037 # Protein_GI_number: 15926186 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Staphylococcus aureus N315 # 1 431 1 431 431 437 53.0 1e-122 MNIKTDGWSKKAHIVVAVSTGIDSMSLLYSLLNDYQHTYRKLTCVHVNHGLREQSYEEEA FLREYCHQHHIDIYIKRLDLSDIVADGNSIQQEARQRRYEWFGDIIAQLRADVLLTAHHL DDQFETIIYRLFTGRSTRNSLGMTYESYFNQYKVYRPMLNLKKTEILAYQYANQIPYYED MSNQDRKYVRNDIRQRIIPAINENPHLNAHQLLKLKDWHDIELQSLKEQAETFINNEVSK SKYLTYSFSRTAFNELNVNIKSVVMDLLFEKLDCHLAMPQHAYDEWFEQIRNDKSQFNIH VTDEWIIQIAYDKLIIMAKSEMDQYILDRICIRKPGTYEFNDYQIDIHPDLPQQLYPLTV RVRQNGDVYKLNGQKGHKKVSRLFIDKKVTLAERQRIPLIINQENAVLAIGDLYVKENFK EFILISNNGDEL >gi|224999996|gb|ACJC01000004.1| GENE 31 29151 - 29690 662 179 aa, chain + ## HITS:1 COG:SA0468 KEGG:ns NR:ns ## COG: SA0468 COG0634 # Protein_GI_number: 15926187 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 178 1 178 179 308 91.0 3e-84 MHKDLKNVLLSEEDIQNICKEMGAIITEDYKDRPLVCVGILKGSVMFMADLIKRIDTHLS IDFMDVSSYHGGTESTGEVQILKDLGASIENKDVLIIEDILETGTTLKSITELLQSRKVN SLEIATLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKAEVYSK >gi|224999996|gb|ACJC01000004.1| GENE 32 29965 - 32067 1385 700 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 1 604 1 593 636 538 47 1e-152 MQKAFRNVLVIAIIGVIIFGLFSFLNGNGNMPKQLTYTQFVNKLNKGDLKTLEIQPEQNV YMVSGKTKKDEDYSSTILYNNEKDLQKITDTAKKQDNLKFTVKEEEKQSVFVSILTTLIP VLIIALLFIFFLSQAQGGGGGGRMMNFGKSKAKMYDSNKRRVRFSDVAGADEEKQELIEI VDFLKDNKKFKQMGSRIPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVG VGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGE NEGIIMIAATNRPDILDPALLRPGRFDRQIQVGRPDVKGREAILHVHAKNKPLDETVDLK AISQRTPGFSGADLENLLNEASLIAAREGKNKIDMRDIEEATDRVIAGPAKKSRVISEKE RNIVAHHEAGHTIIGMVLDEAEIVHKVTIVPRGQAGGYAMMLPKQDRFLMTEPELLDKIC GLLGGRVSEDINFGEVSTGASNDFERATQIARSMVTEYGMSKKLGPLQFSSNSGGQVFLG KDMQGEPNYSGQIAYEIDKEVQRIVKEQYERCKQILLEHEEQLKLIAKTLLSEETLVAEQ IQSLFYDGVLPEVDYDSAKVVKNENSDYSDGKYGKSYNDIRKEQLEDDDKEDDDNHEKDE VNQDNTDREADNTSHTNEPGHQQSPNIDKPYNPNDPNHRQ >gi|224999996|gb|ACJC01000004.1| GENE 33 32322 - 33203 1155 293 aa, chain + ## HITS:1 COG:SA0470 KEGG:ns NR:ns ## COG: SA0470 COG1281 # Protein_GI_number: 15926189 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Staphylococcus aureus N315 # 1 292 1 292 293 511 86.0 1e-145 MTHDYIVRGLAYGGEIRAYAAITTESVQEAQTRHYTWPTASAAMGRTMTATVMMGAMLKG NQKLTVTVDGKGPIGRIIADADAQGNVRAYVDHPQTHFPLNDQGKLDVRRAVGTDGSIQV VKDVGMKDYFSGASPIVSGELGDDFTYYYATSEQTPSSVGLGVLVNPDNSIKAAGGFIIQ VMPGATDETVTKLEEAISQMQPVSKLIEQGLTPEGILNEILGEGNVQILNSTSAQFECNC SHEKFLNAIKGLGEAEIHSMIKEDHGAEAVCHFCGNKYQYSESELEDLLETMK >gi|224999996|gb|ACJC01000004.1| GENE 34 33540 - 34472 978 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 9 309 7 307 308 381 61 1e-105 MAQKPVDYVTQIIGNTPVVKLRNVVDDDAADIYVKLEYQNPGGSVKDRIALAMIEKAERE GKIKPGDTIVEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPG SEAMKGAIKKAKELKEEHGYFEPQQFENPANPEIHELTTGPELVEQFEGRQIDAFLAGVG TGGTLSGVGKVLKKEYPNVEIVAIEPEASPVLSGGEPGPHKLQGLGAGFVPDTLNTEVYD SIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAAIQKAKELGKGKTVVTVLPSNGERY LSTPLYSFDN >gi|224999996|gb|ACJC01000004.1| GENE 35 34786 - 35586 809 266 aa, chain + ## HITS:1 COG:SA0472 KEGG:ns NR:ns ## COG: SA0472 COG0294 # Protein_GI_number: 15926191 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Staphylococcus aureus N315 # 1 266 7 267 267 397 74.0 1e-110 MGILNVTPDSFSDGGQYHSVDQAVKRAKEMIDEGVDIIDVGGVSTRPGHKEVSHKEVSLK EEMNRVLPVVESIVKYDVQISVDTFRSEVAEACLKLGVSMINDQWAGLFDSNMFNVVSQY GAEIVLMHNGDGHRDKPVVEEMLVSLLAQANKAELAGIPHNKIWLDPGIGFAKTREEGNE VMARLDELVATEYPVLLATSRKSYIKEMMNQDSSPSDRDEATAATTAYGIMKGVRGVRVH NVLLNTRLAQSMDFLKENEYERHHLS >gi|224999996|gb|ACJC01000004.1| GENE 36 35564 - 35929 445 121 aa, chain + ## HITS:1 COG:SA0473 KEGG:ns NR:ns ## COG: SA0473 COG1539 # Protein_GI_number: 15926192 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroneopterin aldolase # Organism: Staphylococcus aureus N315 # 1 120 1 120 121 184 77.0 3e-47 MNDIIFLNGMRFYGYHGVLAAENDIGQIFVVDITLKVDLSYAGQSDDVKDTVNYGEVYKD VKSIVEGPRSCLIEHLAERIAKHINSHYNRVMETKVRITKENPPIPGHYDGVGIEIVREN D >gi|224999996|gb|ACJC01000004.1| GENE 37 35930 - 36409 554 159 aa, chain + ## HITS:1 COG:SA0474 KEGG:ns NR:ns ## COG: SA0474 COG0801 # Protein_GI_number: 15926193 # Func_class: H Coenzyme transport and metabolism # Function: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 209 64.0 1e-54 MVKAYLGLGSNIGNRELQLNEAIKILHDYQGIQVTQVSHIYETEPVGYTNQPKFLNLCIE IETELNPQSLLKCCLTTEQQLHRKREIRWGPRTLDIDILLFGDQIIEQDNLSVPHPRMKE RSFVLIPLNDIATKQIEPISNKSIGQLVVPDNSVKKYKE >gi|224999996|gb|ACJC01000004.1| GENE 38 36745 - 38232 1590 495 aa, chain + ## HITS:1 COG:SA0475 KEGG:ns NR:ns ## COG: SA0475 COG1190 # Protein_GI_number: 15926194 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Staphylococcus aureus N315 # 1 495 1 495 495 877 89.0 0 MSEEMNDQMQVRRQKLQELIDLGIDPFGHRFNRSSTSSELKEQWDQFSKEELHEKEDESH VSIAGRLMTKRGKGKAGFAHIQDLKGQIQIYVRKDQVGDDQFNIWKMADLGDIIGVEGVM FKTNTGEISVKAKSFTLLSKSLRPLPDKFHGLQDIEQRYRQRYLDLITNEDSTQTFINRS KIIQEMRNYLNKQGFLEVETPMMHQIAGGAAARPFVTHHNALDATLYMRIAIELHLKRLI VGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYHDIMDLTENMVRHIAQEVFGS AKVQYNDEEIDLESSWKRLHIVDAVKEVTGVDFYNVNSDEEAIRLAKEHDIEITENMKYG HILNEFFEQKVEETLIQPTFIYGHPIEISPLAKKNPNDERFTDRFELFIVGREHANAFTE LNDPIDQRQRFEAQLVEKEQGNDEAHDMDEDYIEALEYGMPPTGGLGIGIDRLVMLLTDS PSIRDVLLFPYMRQK Prediction of potential genes in microbial genomes Time: Sun May 29 07:22:03 2011 Seq name: gi|224999995|gb|ACJC01000005.1| Staphylococcus epidermidis W23144 contig00006, whole genome shotgun sequence Length of sequence - 630 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 567 566 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|224999995|gb|ACJC01000005.1| GENE 1 3 - 567 566 188 aa, chain - ## HITS:1 COG:Cgl2560 KEGG:ns NR:ns ## COG: Cgl2560 COG0477 # Protein_GI_number: 19553810 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 2 188 40 224 494 134 42.0 9e-32 MALPELVRELEPSGTQQLWIVDIYSLVLAGFIIPLSAFADKWGRKKALLTGFALFGLVSL AIFFAESAEFVIAIRFLLGIAGALIMPTTLSMIRVIFENPKERATALAVWSIASSIGAVF GPIIGGALLEQFSWHSAFLINVPFAIIAVVAGLFLLPESKLSKEKSHSWDIPSTILSIAG MIGLVWSI Prediction of potential genes in microbial genomes Time: Sun May 29 07:22:03 2011 Seq name: gi|224999994|gb|ACJC01000006.1| Staphylococcus epidermidis W23144 contig00007, whole genome shotgun sequence Length of sequence - 1321 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 688 - 747 13.3 1 1 Tu 1 . + CDS 779 - 1255 505 ## pSHaeB02 replication and maintenance protein Predicted protein(s) >gi|224999994|gb|ACJC01000006.1| GENE 1 779 - 1255 505 158 aa, chain + ## HITS:1 COG:no KEGG:pSHaeB02 NR:ns ## KEGG: pSHaeB02 # Name: rep # Def: replication and maintenance protein # Organism: S.haemolyticus # Pathway: not_defined # 1 158 1 158 158 266 95.0 2e-70 MKERYGTVYKGSQRLIDEQSGEVIEVDKLYRKQTSGNFVKAYIVQLISMLDMIGGKKLKI VNYILDNVHLSNNTMISTTREIAKATGTSLQTVTTTLKILEEGNIIKRKTGALMLNPELL MRGDDQKQKYLLLEFGNFEQEVDDKQENALSDYYSFKD Prediction of potential genes in microbial genomes Time: Sun May 29 07:22:07 2011 Seq name: gi|224999993|gb|ACJC01000007.1| Staphylococcus epidermidis W23144 contig00008, whole genome shotgun sequence Length of sequence - 4693 bp Number of predicted genes - 9, with homology - 8 Number of transcription units - 4, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 41 - 256 113 ## gi|242241607|ref|ZP_04796052.1| hypothetical protein HMPREF0791_0133 2 2 Op 1 . - CDS 296 - 880 450 ## MCCL_plsE0002 hypothetical protein 3 2 Op 2 . - CDS 633 - 1577 1044 ## COG3843 Type IV secretory pathway, VirD2 components (relaxase) 4 2 Op 3 . - CDS 1564 - 1752 175 ## gi|242241610|ref|ZP_04796055.1| hypothetical protein HMPREF0791_0136 5 2 Op 4 . - CDS 1737 - 2117 262 ## SEA0027 mobilization protein - Prom 2254 - 2313 7.1 - Term 2344 - 2382 1.0 6 3 Op 1 . - CDS 2401 - 2670 317 ## gi|242241612|ref|ZP_04796057.1| hypothetical protein HMPREF0791_0138 7 3 Op 2 . - CDS 2687 - 3310 582 ## MCCL_plsE0001 plasmid replication initiation protein - Term 3599 - 3633 5.5 8 4 Op 1 . - CDS 3711 - 4304 676 ## METDI1664 hypothetical protein 9 4 Op 2 . - CDS 4316 - 4570 122 ## - Prom 4630 - 4689 2.3 Predicted protein(s) >gi|224999993|gb|ACJC01000007.1| GENE 1 41 - 256 113 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241607|ref|ZP_04796052.1| ## NR: gi|242241607|ref|ZP_04796052.1| hypothetical protein HMPREF0791_0133 [Staphylococcus epidermidis W23144] # 1 71 1 71 71 99 100.0 7e-20 MQKLNWYINQVQLETLIALLNQIMISKQQTKSNNIRNIKQLSKLSLLFQKTLAHSFLIME PYSNPFIHTNK >gi|224999993|gb|ACJC01000007.1| GENE 2 296 - 880 450 194 aa, chain - ## HITS:1 COG:no KEGG:MCCL_plsE0002 NR:ns ## KEGG: MCCL_plsE0002 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 7 192 15 200 231 199 62.0 4e-50 MSMKDIKNNKENPTMQTESRSTGTPLSDTQSNLNNKELNELKRQNKLIVNYLEEIQESQK TREKEQEAITLKLKETTKDFRDNSIKTHNDFVRLLQDNLKKVNTEEIQAELRQEIRQVQD ENKEMLREVRASHEHYQKRQKQLFTGIGSMLLVFMLFALIMTIGSDFMSFLHVDILQKAI ASKIKASEGFMTFV >gi|224999993|gb|ACJC01000007.1| GENE 3 633 - 1577 1044 314 aa, chain - ## HITS:1 COG:SP1056_1 KEGG:ns NR:ns ## COG: SP1056_1 COG3843 # Protein_GI_number: 15900926 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD2 components (relaxase) # Organism: Streptococcus pneumoniae TIGR4 # 53 222 80 246 402 60 30.0 6e-09 MATTKLGNTKSASRAINYAEKRAVEKSGLNCDVDYAKSAFKQTRALYVKENGIQAHTIIQ SFKPGEVTPEQCNQLGLELAEKIAPNHQVAVYTHADTDHVHNHIVINSIDLETGRKYQSN KRQREFVKKTNDDICVSHHLSIPNRQAQIRYTQAEKGIVFDREEYSWKDELRELIENAKT HTSNLETFSEHLEAKGVKVKLRGETISYKPENANKWVRGRTLGSDYEKGAVDDEHERHQE QQREPDYADRIKVDWDAIERHTEQLKQQRIERAQKTKQANRKLFGRDTRESENERERTRS HNIKIERDDEGLSR >gi|224999993|gb|ACJC01000007.1| GENE 4 1564 - 1752 175 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241610|ref|ZP_04796055.1| ## NR: gi|242241610|ref|ZP_04796055.1| hypothetical protein HMPREF0791_0136 [Staphylococcus epidermidis W23144] # 1 62 1 62 62 100 100.0 2e-20 MEKNLEITASLIVLLLSFGFSIWNFYISSYETAVVMLIIGIINIGYLVKEIKEKRSDTDG NN >gi|224999993|gb|ACJC01000007.1| GENE 5 1737 - 2117 262 126 aa, chain - ## HITS:1 COG:no KEGG:SEA0027 NR:ns ## KEGG: SEA0027 # Name: not_defined # Def: mobilization protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 126 5 130 131 173 75.0 2e-42 MSEHDNNLANDLHVGESRKPNRKEPKQISFRVSESEYEKLRSSAETLNMTVPAFVKKKAQ GARLVAPKLDQSTRQSVAKDLSMLGANANQIAKYCNQHQHEAPNYEGLEHNINAVRERLN DIWRKI >gi|224999993|gb|ACJC01000007.1| GENE 6 2401 - 2670 317 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241612|ref|ZP_04796057.1| ## NR: gi|242241612|ref|ZP_04796057.1| hypothetical protein HMPREF0791_0138 [Staphylococcus epidermidis W23144] # 1 89 14 102 102 103 100.0 3e-21 MNNTKLENGDDFLKKEEYSLLTNLINILVGILLIIAILLMIIIPNNSDLPTLFALLAFTI SSIPGILKKKVSGWVLGILGLIFIILFLI >gi|224999993|gb|ACJC01000007.1| GENE 7 2687 - 3310 582 207 aa, chain - ## HITS:1 COG:no KEGG:MCCL_plsE0001 NR:ns ## KEGG: MCCL_plsE0001 # Name: not_defined # Def: plasmid replication initiation protein # Organism: M.caseolyticus # Pathway: not_defined # 1 207 108 314 314 334 86.0 1e-90 MRVEFNPNKLTHEEMLWLKQNIIDYMEDDGFTRLDLAFDFEDDLSDYYTMTDKAVKKTIF YGRNGKPETKYFGVRDSDRFIRIYNKKQERKDNADVEVMFEHLWRVEIELKRDMVDYWND CFNDLHILKPSWSTLENIKEQAMIYLLINAESKWGQLTRPTKVKYKNMIKEISPIDLTYL MKSTLKANEKQLQKQINFWQREFRFWK >gi|224999993|gb|ACJC01000007.1| GENE 8 3711 - 4304 676 197 aa, chain - ## HITS:1 COG:no KEGG:METDI1664 NR:ns ## KEGG: METDI1664 # Name: not_defined # Def: hypothetical protein # Organism: M.dichloromethanicum # Pathway: not_defined # 92 177 92 179 194 63 35.0 3e-09 MKKCFSFVLISVFLLGIVFSIPVHAQENSNGSENQEFTPEEKQQLAKDKKEAQFNDSYLK QDSEGNFIADKNKMNDDNLNKNQQDNIIEYSKAKSELKPDGFSTYKKKKKKMWYGHYCGK GDIGGKPIDALDSACKKHDSCYAKHGWGACACDAPFIRATNKIIKNKKYSANMRKKAKQA RLVFAGGYFISCAPGAN >gi|224999993|gb|ACJC01000007.1| GENE 9 4316 - 4570 122 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKILIYGLNTLNYIILLLLILLNLHNLQQIGLNICEYFLLSSIGILIISLIIYFFKKKEI FLVSVFINFLNIAIIFPILLLSLF Prediction of potential genes in microbial genomes Time: Sun May 29 07:22:38 2011 Seq name: gi|224999992|gb|ACJC01000008.1| Staphylococcus epidermidis W23144 contig00009, whole genome shotgun sequence Length of sequence - 1425 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 71 - 355 172 ## gi|242241615|ref|ZP_04796060.1| hypothetical protein HMPREF0791_0141 - Prom 382 - 441 6.4 2 1 Op 2 . - CDS 443 - 1021 592 ## COG0681 Signal peptidase I - Prom 1267 - 1326 7.3 Predicted protein(s) >gi|224999992|gb|ACJC01000008.1| GENE 1 71 - 355 172 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241615|ref|ZP_04796060.1| ## NR: gi|242241615|ref|ZP_04796060.1| hypothetical protein HMPREF0791_0141 [Staphylococcus epidermidis W23144] # 1 94 1 94 94 142 100.0 6e-33 MHIVKNLTKITVASALLLDLGGIYANIEHQSNNTLSHHTVDAKTLPKKTFTTHRSAKKKS NLPKSIHYSKRVKKIKLCISLIVELLKESLLKKW >gi|224999992|gb|ACJC01000008.1| GENE 2 443 - 1021 592 192 aa, chain - ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 189 1 187 191 172 49.0 4e-43 MKKELKEWLIAIIIAVLLLFLVNTFLIKSYTVSGLSMYPTFNNKDKVIVSKISKSLNHLD SGDVIVFHKNKKNNFIKRLVGKPGDQIEYKNDKLYINKHYIKEPYLTYNKKMNDSGDNLT ENFNVSDIKGSKHKMTIPKDKYLVLGDNRTNSIDSRSSEVGLVSEKQIVGKVILRFWPFN NMKYNFRPDIFK Prediction of potential genes in microbial genomes Time: Sun May 29 07:22:44 2011 Seq name: gi|224999991|gb|ACJC01000009.1| Staphylococcus epidermidis W23144 contig00010, whole genome shotgun sequence Length of sequence - 3918 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 307 - 338 3.1 1 1 Op 1 . - CDS 343 - 498 214 ## gi|242241618|ref|ZP_04796063.1| hypothetical protein HMPREF0791_0144 2 1 Op 2 . - CDS 575 - 2293 1169 ## COG1132 ABC-type multidrug transport system, ATPase and permease components 3 1 Op 3 . - CDS 2313 - 2753 289 ## gi|242241620|ref|ZP_04796065.1| hypothetical protein HMPREF0791_0146 - Prom 2796 - 2855 9.8 + Prom 2760 - 2819 7.3 4 2 Tu 1 . + CDS 2844 - 3143 105 ## + Prom 3148 - 3207 5.8 5 3 Tu 1 . + CDS 3391 - 3705 186 ## gi|242241622|ref|ZP_04796067.1| hypothetical protein HMPREF0791_0148 Predicted protein(s) >gi|224999991|gb|ACJC01000009.1| GENE 1 343 - 498 214 51 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241618|ref|ZP_04796063.1| ## NR: gi|242241618|ref|ZP_04796063.1| hypothetical protein HMPREF0791_0144 [Staphylococcus epidermidis W23144] # 1 51 15 65 65 77 100.0 2e-13 MGKTPQVKPGLPNPWTTAAQIVTAASCKHHTKYSCETSPAETKHPKAPGSN >gi|224999991|gb|ACJC01000009.1| GENE 2 575 - 2293 1169 572 aa, chain - ## HITS:1 COG:SA0599 KEGG:ns NR:ns ## COG: SA0599 COG1132 # Protein_GI_number: 15926320 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase and permease components # Organism: Staphylococcus aureus N315 # 1 571 1 573 575 514 47.0 1e-145 MKQKNPVLHLVNEIEIPKWLLFFSVLLSIIGSIFQLIVPLFTQNIVDNFSEVIKNKYYII VFVFIFLLSSILNGLSIYLLTRLGENIIYSLTNKVWNHILRLKTSFFDKNSNGELLSRII DDTKSINSFITEIIPSFFPSIIVLFGSIFFLFMLDWETALIALISIPMYVILIIPISNVM QKLSYKTQLETAKVSGVIAHVLSKIKLVKLSNSINKEFRQTNSYLRNIYYLGVKEGVINS IVVPLSTLIMLVSMGGVLGFGGYRVASGAISPGTLIALIFYMTQLTDPIEKISSLFTGYK KTIGASQRLSEILSEEKENLQNNNLNILNSVDLSFNNVSFSYDENNHVFTNLSFTIPKNK ITAIVGPSGSGKTTILNLISRLYEIQSGSIKYGTNSIYDYSLVNWRKNLGYVMQNSGVLN RTVKSNITYSLQETPCIEDIIYYSKLASTHDFIMKLPNDYNTLIGEKGINLSGGEKQRLD IARNFIKTPGILLLDEATSNLDSESEHKIQESIKNVSNDRTTIIVAHRLSTVLKADKIIF IDNGEITGMGTHEELLARHSKYKNMIELQQLK >gi|224999991|gb|ACJC01000009.1| GENE 3 2313 - 2753 289 146 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241620|ref|ZP_04796065.1| ## NR: gi|242241620|ref|ZP_04796065.1| hypothetical protein HMPREF0791_0146 [Staphylococcus epidermidis W23144] # 1 146 4 149 149 247 100.0 2e-64 MVYIIALLLFVLIISIIFFYNDINRKILDLQGIPISLSFPYKNFNLTESKNYIFCLSTQC PHCAKIIDELLSLNDHLNNVYVIFIDDEVAVDNYFNTKGPFNFKIIKDINWEELFISQTP FMYVVNEKNIITEKGILKNTKNLEIY >gi|224999991|gb|ACJC01000009.1| GENE 4 2844 - 3143 105 99 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVISNLKEQDIINTLSIFIDTLVQFILLVNLLPKQSHSWPFFPINIKTVTNKLKKVYINK SIVILHIEIFSERNIVSGTKTSINISKNEQNLISFKFTL >gi|224999991|gb|ACJC01000009.1| GENE 5 3391 - 3705 186 104 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241622|ref|ZP_04796067.1| ## NR: gi|242241622|ref|ZP_04796067.1| hypothetical protein HMPREF0791_0148 [Staphylococcus epidermidis W23144] # 1 104 1 104 104 159 100.0 4e-38 MFEKMFKISSLLFLINMIFVAIKDIVLGGETTRAGNNLLVIITIIFTISMLITSFYYIKN RKSDSSKNYKGLYYTVLIFMPIVWILVGYYVFSPLPELLSHTNT Prediction of potential genes in microbial genomes Time: Sun May 29 07:23:06 2011 Seq name: gi|224999990|gb|ACJC01000010.1| Staphylococcus epidermidis W23144 contig00011, whole genome shotgun sequence Length of sequence - 942 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 270 - 329 8.4 1 1 Tu 1 . + CDS 510 - 710 120 ## SH0287 hypothetical protein 2 2 Tu 1 . - CDS 757 - 918 104 ## gi|242241624|ref|ZP_04796069.1| conserved hypothetical protein Predicted protein(s) >gi|224999990|gb|ACJC01000010.1| GENE 1 510 - 710 120 66 aa, chain + ## HITS:1 COG:no KEGG:SH0287 NR:ns ## KEGG: SH0287 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 65 151 215 220 61 50.0 1e-08 MFQKKQWLGVIVSIILFTLSHGPTNATDYIIYGIPAIIYSINYYKTQRLEIPIIIHILNN LLATLY >gi|224999990|gb|ACJC01000010.1| GENE 2 757 - 918 104 53 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241624|ref|ZP_04796069.1| ## NR: gi|242241624|ref|ZP_04796069.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 53 1 53 53 66 100.0 4e-10 MSSRIVVQLLLSILMLFFIHQQINQSHLDFWFIIYFLFFIAVVLFWKPSKDKK Prediction of potential genes in microbial genomes Time: Sun May 29 07:23:14 2011 Seq name: gi|224999989|gb|ACJC01000011.1| Staphylococcus epidermidis W23144 contig00012, whole genome shotgun sequence Length of sequence - 4848 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 76 - 702 412 ## gi|242241625|ref|ZP_04796070.1| hypothetical protein HMPREF0791_0151 + Term 724 - 780 4.1 + Prom 763 - 822 5.6 2 2 Tu 1 . + CDS 845 - 1042 243 ## gi|242241626|ref|ZP_04796071.1| hypothetical protein HMPREF0791_0152 + Prom 1315 - 1374 7.4 3 3 Tu 1 . + CDS 1407 - 2549 937 ## USA300HOU_2140 SAP domain-containing protein + Term 2702 - 2735 -0.3 - Term 2785 - 2826 6.0 4 4 Tu 1 . - CDS 2898 - 4847 1583 ## SE2204 hypothetical protein Predicted protein(s) >gi|224999989|gb|ACJC01000011.1| GENE 1 76 - 702 412 208 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241625|ref|ZP_04796070.1| ## NR: gi|242241625|ref|ZP_04796070.1| hypothetical protein HMPREF0791_0151 [Staphylococcus epidermidis W23144] # 1 208 1 208 208 344 100.0 2e-93 MMFLYSKIYYGDYKSQEFKGIYSLIEVSALLILLFVFSLFFVKDYMKTNYSFLMAADFKK SIKQNNMFSKYSNDILKDISSCIVDNDFKVSGRLEKLKKSQNSIYKKRNVTKVYELISFI SWFALPLLMSQVYVGIFTAYKGIELFIMLLITLIAFVLANSLAVYFDLKLQRGDVSATDK MIKTHIEQYEKLLNKEKKEDAERKNSEH >gi|224999989|gb|ACJC01000011.1| GENE 2 845 - 1042 243 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241626|ref|ZP_04796071.1| ## NR: gi|242241626|ref|ZP_04796071.1| hypothetical protein HMPREF0791_0152 [Staphylococcus epidermidis W23144] # 1 65 1 65 65 75 100.0 9e-13 MIMNVANYYFKDVDVVDVFDSEVLSESNKTALIIEHKNVVYINKEIKDVSIFDIRNAANK YKKAN >gi|224999989|gb|ACJC01000011.1| GENE 3 1407 - 2549 937 380 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_2140 NR:ns ## KEGG: USA300HOU_2140 # Name: not_defined # Def: SAP domain-containing protein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 380 1 368 378 166 35.0 1e-39 MKLNVQDLLVLHENVNRKIGNERFNNFYLSKNNVDILSSLNKIIEEQILIKNSSLEVTLH KLTKKDLKTILKNGGLTVGGTKRDLIERILNNIERIDDEYLEVTPVYTPTAKGEKLLEET KYVVHFEWGYNNISLPQAHEIATNHIGDTNLDKVVEIYKFEINRIYKSTPIDNKLINLYR DLSEYFKRYKNDNDSARMYYNLAYYLQIKITLEDMRRPVSSAYDAYGKFSEEHLKRSLEP THFRETVYEQLIFIERLSKKKIYDLFIQDVSNYYDLDEEIFKYVINYLIAYIKKEDDQEA LSKVIDLIKSENLIPKKERDTFKYDFDEDYYIEENANRNRQTIKTNINKLIKEDVNIEVE IDIDTGEIVWYIEEDELKKL >gi|224999989|gb|ACJC01000011.1| GENE 4 2898 - 4847 1583 649 aa, chain - ## HITS:1 COG:no KEGG:SE2204 NR:ns ## KEGG: SE2204 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 649 225 873 873 922 85.0 0 KLNFESFKLAFRDPKARVKLNFDINNKYPHSSINEIKISMGYLDNLSLDLSPNLNTIIGG RGAGKSTFIELIRYALDINPMSRNANTSFENICKSNLGIGGKVELVVTSHAQYGKQFKII KRYNEDPIIKDINNNVSNYTVKDILPNIEVYSQNEIIDLTTDENAKLKILNRFLNKNDNN DEKKEEIKSNLQSNTESLIKTEEKLEKLQEKINELPKLKEKLKHFNELGIGKKLEVQGKV SKEEQYIKTTKKIIEDNDISITNVILPFKENYNREIKHIDIFDNIQRIINNHNEKLKEIQ STFTELKNTTKNEIDKVYNDWHEKKKHVEKEINEAIKSLDDIEGKTKEDIAYEYTETQKQ ITSIEPLETQLSQVNIEIEKLKKERMQLKENLKEIFDEQLKNLNKCAKKINNNYLKGQVN IKIQPYANVNNLIKFLKEENGLGYSTLEWIKNHQSFNLPKFINLIKDRDSEAIYDEYKDS GLKKNKADILSNMDYERILHLESIELENIIDIQLNVGSDENIKFRSLNKLSKGQQCTAIL NLLTLSNDDPLLVDQPEDNLDNSFITNNLVENTRKLKINRQFIFATHNANIPVFGDAELI VIMENENGQGIINNESLGSIDNNLVRNSVIQILEGGDVAFKMRKNKYGL Prediction of potential genes in microbial genomes Time: Sun May 29 07:23:43 2011 Seq name: gi|224999988|gb|ACJC01000012.1| Staphylococcus epidermidis W23144 contig00013, whole genome shotgun sequence Length of sequence - 3870 bp Number of predicted genes - 5, with homology - 4 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 670 518 ## SE2204 hypothetical protein - Prom 704 - 763 9.8 2 2 Tu 1 . + CDS 891 - 1496 802 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 1645 - 1693 -0.3 + Prom 1668 - 1727 8.3 3 3 Tu 1 . + CDS 1793 - 1978 116 ## gi|242241631|ref|ZP_04796076.1| hypothetical protein HMPREF0791_0157 4 4 Tu 1 . - CDS 1926 - 2120 146 ## - Prom 2143 - 2202 11.6 - Term 2672 - 2712 5.1 5 5 Tu 1 . - CDS 2856 - 3869 983 ## COG4716 Myosin-crossreactive antigen Predicted protein(s) >gi|224999988|gb|ACJC01000012.1| GENE 1 1 - 670 518 223 aa, chain - ## HITS:1 COG:no KEGG:SE2204 NR:ns ## KEGG: SE2204 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 223 1 223 873 393 87.0 1e-108 MPKNYAEFYKCALQVNPYSYIKYRGLEHEMTEEQYNESIYNYCIKNNISIIGLADHGNVD KSKKLREYLSSKGILVFPGFEISTSEKIHIVCLFSENTEEQELERYLGELGLSNPEDGNS PSTMSFHDITQRVIDRGGFWYAAHITSDNGVLKGKHNNLWKSDKLVAAQIPSKKNEVDPK YINILKNKDPNYQKQTPFALINAKDVSKPEDLDLDTASCLIKM >gi|224999988|gb|ACJC01000012.1| GENE 2 891 - 1496 802 201 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 197 1 197 199 261 70.0 5e-70 MIVGYARVSSIDQNLERQLENLKTFGVEKIFTEKQSGKSVENRPVLQEALNFVRMGDRFI VESIDRLGRNYDEVIHTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMV SEQERNESKRRQAQGIKVAKEKGVYKGRPLLYSANAKDPQKRIIYHRVLEMLEEGKSISN IAKEVNITRQTVYRIKHDKEL >gi|224999988|gb|ACJC01000012.1| GENE 3 1793 - 1978 116 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241631|ref|ZP_04796076.1| ## NR: gi|242241631|ref|ZP_04796076.1| hypothetical protein HMPREF0791_0157 [Staphylococcus epidermidis W23144] # 1 61 1 61 61 72 100.0 7e-12 MLIKNKIYLSIIIGIFIACLIIGLNENIIVSSLGERIFYILSFLFNVLILIGVIGGRDTH T >gi|224999988|gb|ACJC01000012.1| GENE 4 1926 - 2120 146 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTMGVKRPSFLLYNVKTKNYLLYRSKNLIFYWQIIGSDNYGREKIKGTMYEYLDLQLHQL GLIH >gi|224999988|gb|ACJC01000012.1| GENE 5 2856 - 3869 983 337 aa, chain - ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 337 255 591 591 511 70.0 1e-144 VDSTSSTKIAREILVNKNGKTESIPLTLDDLVFVTNGSITESSTYGDNDHPAPPTKALGG SWTLWKNLANQSPEFGRPEKFCDHIPDKSWLVSATTTTNNKKVISYIEKLSKRDVLSGRT VTGGIVTVADSSWQLSFTVNRQQQFKEQPKDQVSVWIYALYSDVKGDFIKKPITECTGSE ICQEWLYHMGVPQDELVELAQTECNTIPVYMPYVTAYFMPRAYKDRPLVVPNGSKNLAFI GNFAETERDTVFTTEYSVRTAMEAVYQLLEVDRGVPEVYASEFDARVLMDAYYQLNDRKS LPELVNNNFIKRSVLKNAMKKIQGTFIEELLRKHKLL Prediction of potential genes in microbial genomes Time: Sun May 29 07:23:56 2011 Seq name: gi|224999987|gb|ACJC01000013.1| Staphylococcus epidermidis W23144 contig00014, whole genome shotgun sequence Length of sequence - 3009 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 195 283 ## COG4716 Myosin-crossreactive antigen - Prom 248 - 307 9.3 + Prom 323 - 382 10.9 2 2 Tu 1 . + CDS 409 - 2223 1866 ## COG1250 3-hydroxyacyl-CoA dehydrogenase + Term 2325 - 2368 5.1 Predicted protein(s) >gi|224999987|gb|ACJC01000013.1| GENE 1 3 - 195 283 64 aa, chain - ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 64 1 64 591 114 82.0 4e-26 MYYTNSNYEAFARPKKPENVDKKSAYLIGSGLASLAAACFLIRDGQMKGKNIHILEELDI SGGS >gi|224999987|gb|ACJC01000013.1| GENE 2 409 - 2223 1866 604 aa, chain + ## HITS:1 COG:DRA0143 KEGG:ns NR:ns ## COG: DRA0143 COG1250 # Protein_GI_number: 15807812 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Deinococcus radiodurans # 273 604 9 347 347 279 43.0 1e-74 MSFKKIMIVDGGTKGSQISFQIAFSGFDVALYETNPKDIQSIKRYLNILKSYYKDELKAT QSHIDEAYNMITFVHSIDEGIKDADLVIESMSESKGSQNNFYQEIDKKANHETIFATTHS NLLSSDVLNTINHKDKCIAVNFLSEPWLRNIVEVIGTPGTDLSAYDRVLHFLESIKMITI PVRQNEPYSILNSLLVPFISAASYLIGNDVADVITIDKTWMKATGDLQGPFGLQDIIGLD TTLDILKLKNETNKDMWKQNYIDIVNAMIKDGKLGKLSGQGFYKYPNPIFEKNNFFDAPT YIQNLTHGFKNITIAGGGVLGSQVAFQVASGGFEVNLYDINENALNKAKERIDNIKVQYE KDMGVSKNEVNSIAHNINYYSNLFEATNNSDLIIEVVPENHEVKEKFYKQLAQVMPEKTY VVTNSSTLRPSDFEAYTGRPKKFAALHFANHVWINNTGEVMVAHETSEETFNKILAFAHD INLTVLPIKKEQPGYILNTLLVPLLTAAQRLLALGITDFKMIDKAWMIATQSKKGPFAIL DIVGLNTAYNIALDSYKRTQSPIDKRILDILKEKVNNNELGIGVGKGFYDYTNGVPYESK SFLK Prediction of potential genes in microbial genomes Time: Sun May 29 07:23:59 2011 Seq name: gi|224999986|gb|ACJC01000014.1| Staphylococcus epidermidis W23144 contig00015, whole genome shotgun sequence Length of sequence - 10992 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 8, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 474 394 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 683 - 720 1.1 2 2 Tu 1 . - CDS 1331 - 1873 509 ## SEA0025 resolvase, putative - Prom 1944 - 2003 10.6 + Prom 1901 - 1960 12.0 3 3 Op 1 4/0.000 + CDS 1988 - 3439 1537 ## COG0659 Sulfate permease and related transporters (MFS superfamily) 4 3 Op 2 . + CDS 3452 - 3865 476 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 3875 - 3908 2.3 - Term 4084 - 4135 5.4 5 4 Tu 1 . - CDS 4158 - 4886 793 ## SAVP034 replication-associated protein - Prom 4914 - 4973 6.0 + Prom 5070 - 5129 8.1 6 5 Tu 1 . + CDS 5326 - 6261 779 ## SAVP001 replication initiator protein A + Term 6314 - 6360 6.2 - Term 6387 - 6435 -0.6 7 6 Op 1 . - CDS 6490 - 6729 216 ## SE_p404 hypothetical protein 8 6 Op 2 . - CDS 6746 - 7015 437 ## SE_p403 hypothetical protein - Prom 7118 - 7177 4.8 + Prom 7037 - 7096 7.6 9 7 Tu 1 . + CDS 7219 - 9141 2169 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 9226 - 9268 1.4 + Prom 9486 - 9545 11.7 10 8 Tu 1 . + CDS 9573 - 10178 486 ## SERP2234 hypothetical protein + Term 10350 - 10402 0.1 Predicted protein(s) >gi|224999986|gb|ACJC01000014.1| GENE 1 1 - 474 394 157 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 157 100 256 256 137 62.0 6e-33 TLILFSLLYFIVSIVVGIILWAIFFNDINLLESKGDALSLLSKMLLTGLGTYVGTWLVLS ITLLISCAMKSPGVSIAVGIVLYFATSILSGILTIVVDKWEWLKWNPISMMNIMVQIVDK NMKKFTKLELHELFIGNIVYIIIFLIIVVFVFKKKNV >gi|224999986|gb|ACJC01000014.1| GENE 2 1331 - 1873 509 180 aa, chain - ## HITS:1 COG:no KEGG:SEA0025 NR:ns ## KEGG: SEA0025 # Name: not_defined # Def: resolvase, putative # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 180 1 180 180 269 86.0 4e-71 MKYGYIRPVTINDDLNEQKKKIETYTKKIVEESHANNKKRNELDLLLKKKLVSGDAVYIT DLCILADSTKQLVDILDYLSQKDISLYVINLNRYIYKNIQGEFLEILHDITDFQSDVVKF RTRVGLENYTKEGKKLGRPKRDDKNLRDAIEMYMSKNYTLDEIKEKTNISRATLYRHLDK >gi|224999986|gb|ACJC01000014.1| GENE 3 1988 - 3439 1537 483 aa, chain + ## HITS:1 COG:BH0414 KEGG:ns NR:ns ## COG: BH0414 COG0659 # Protein_GI_number: 15612977 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Bacillus halodurans # 2 479 3 482 486 489 58.0 1e-138 MVEKLKHEWFNQPGKNILAGIVVALALIPEAIAFSIIAGVDPMVGLYASFIIAVVTAIVG GRPAMISGATGAVALLVTPLVKDYGVEYLLAATILMGVIQLVLGLLKVGRLMKFIPHSVM IGFVNALGIMIFMSQIEHIFGISISTYIYVIVTLLIVYIIPKFFKAIPAPLIAIIVLTAL YMYTGSDVRTVGDLGNIKQALPHFLIPNVPFNLETLQIIFPYSLSMAIVGLVESLLTAKI VDDATDTYSSKNRESRGQGIANMITGLFGGMGGCAMIGQSVINVKSGANSRLSTFSAGVV LIFMIIVLGGLVVQIPMPILAGIMVMVSIGTFDWNSFKYIQKAPKTDAVVMILTVIIVLM THNLALGVVVGVIFSALFFATKISKVEVTSEKFGKTNRLSFKGQIFFVSIDSMMDQISFN IENSIIELNFNNAHLWDDSAVDAIDTMVRKFEEKNNIVHVEKLNSDSRKIVSELSKLNEN HLN >gi|224999986|gb|ACJC01000014.1| GENE 4 3452 - 3865 476 137 aa, chain + ## HITS:1 COG:BH0415 KEGG:ns NR:ns ## COG: BH0415 COG0589 # Protein_GI_number: 15612978 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Bacillus halodurans # 3 137 2 137 137 104 41.0 5e-23 MYKSILLAADGSENSLRSAQEVLNFIDENTIVTLITVVNVEESKTDVLHGKQGHSLTNER EDKLSSITELFVEHNVNYEVKIAHGLPAETVVSVANSGKYQAIVLGSRGLNSLQEMVLGS VSHKVAKRSKIPVIIVK >gi|224999986|gb|ACJC01000014.1| GENE 5 4158 - 4886 793 242 aa, chain - ## HITS:1 COG:no KEGG:SAVP034 NR:ns ## KEGG: SAVP034 # Name: not_defined # Def: replication-associated protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 241 1 252 253 202 73.0 1e-50 MKTIKMIADELGVTKQTIVNNAKRLNISFEKENGINYINDNDYLKIIEKITKKERTTQNK ESVKKELFDENTAKVEKYIYNNSNSSETLKTKVNELEKQIEIFETRAKNDEKYIENLTKQ LDQQNSNVNTLNKLLENQQILALESNKKIQKLENQLEEERQLNYSFDKSTNDRKNFDVQE ASYTSDSVNTNQYQKEEINPVVQSKGISENQQDGEKQKENDKGIAIEETQTKKGFWSRLF GG >gi|224999986|gb|ACJC01000014.1| GENE 6 5326 - 6261 779 311 aa, chain + ## HITS:1 COG:no KEGG:SAVP001 NR:ns ## KEGG: SAVP001 # Name: repA # Def: replication initiator protein A # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 310 1 310 311 483 93.0 1e-135 MPNFEKYNLSQVKTERFYQLPKYLFEDAYFKKMSAEAKIMYALLKDRFELSLQNEWVDKN NNIYFIFSNKHLCEYLGYAEQKIIKLKKELIKFNLLTQERVGLNKPNRLYLLKPNYNIKA SHTKELPNSQFQNNEFGSSRTVNLSGQELPNSQSNDTDYNDTDYIKTESNDTDDLNDNKL NYPSNHTSHSNHYYSKFNDDALKFQLLEELPQSIQNYLNNFSVDEIKLIKSVLLKAKTSF NNSIDTYYLLEDMEIEILHVLKRFKAVLIQKNETVEAMQGYLMKSLKSEFAEVHTLNKRR DNLPITSLFNT >gi|224999986|gb|ACJC01000014.1| GENE 7 6490 - 6729 216 79 aa, chain - ## HITS:1 COG:no KEGG:SE_p404 NR:ns ## KEGG: SE_p404 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 79 1 79 79 97 89.0 1e-19 MDDFKHLKKTNAAIEKAELRKNRIKNLDRKERAHRLIRKGAMLEKYFECEHLSPDETEEL LKIYSNYINTNKPNKYKKK >gi|224999986|gb|ACJC01000014.1| GENE 8 6746 - 7015 437 89 aa, chain - ## HITS:1 COG:no KEGG:SE_p403 NR:ns ## KEGG: SE_p403 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 89 1 89 89 84 93.0 2e-15 MSKIKQTDITKLSQLEQQIEQLKEQKKKQEAQLSNKIGGYFLNKLDLNMINSSDELYKIM DKVIEEFNKDMEQNNSNGNNENLTENKIN >gi|224999986|gb|ACJC01000014.1| GENE 9 7219 - 9141 2169 640 aa, chain + ## HITS:1 COG:AGpT237 KEGG:ns NR:ns ## COG: AGpT237 COG0507 # Protein_GI_number: 16119945 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 18 248 34 282 1117 87 26.0 7e-17 MEKGYFMLRVTNINRATKNIVASASYRSDEALYSERTDEKIKFRNHTVKPESMILTPQHA PDWTKDRQRLWNEVDKVEKHNAKTKNPRLAKEVLLSLPNDFDREVQTELTKDFIKSEFVD KGMVADISIHRDDMNNPHAHVLLTQRPFNADGTWGKKTKTKTRYDENGHAILNQNGNKVR KQERFADFDFKEVRKHWELKLNQYSEREQSLRRYDSRSFEDQGLEKIAEIPLTREEYRLE KNEQKRCEKEGIEYQPVTYYGQKNEQIRRYNRGEVSQIFSDKEKEQAQNEIRLFTQNANE QVSKNEQSYSILFDRYQRDVGYSEAKETIKNTFDSASTFGRKIQNDLLKNEIKRRQLKFY AKNYDENYQFRKEIESKGYSQQEFVNTVETNYKALLNEKNKLESREEKRKEIYQSAKDVY LTESEKNHLIVQQMYPKSHHHFSHDEKAFIVDEAQKGNIIKATHVQYLFKQNNNIPNDVL LEDTYKKASKDIFFSERHLKRLEKDSFEYNAELQFIKEREKEIESYKEHIDDDLRIDIGD RSFEKVKDQTPNEKVQLLIKLEKYNNIDQEKVIEKHINQVDRNNNDNHLEHEYEQSNHIH LPKINASDFLMYYANETEKQNNINHKKKKKKQDRNNQMRR >gi|224999986|gb|ACJC01000014.1| GENE 10 9573 - 10178 486 201 aa, chain + ## HITS:1 COG:no KEGG:SERP2234 NR:ns ## KEGG: SERP2234 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 191 43 233 243 350 97.0 1e-95 MTDFTVGEFKFPSGSIKVTRKGIEKDQQEYLRQFEKENDKSIEFDADEMSAKIGELFGVE YKDGLPIDNSGGGGAPPKSESHNPSVFNAHLFSIVASEDSLKEEYNFFGFKETIISLYTA YLSNYKKDKWVTKGGAPYHVSNREESLEKKAFDIITGYYLEAMNTRKKWNFNTIKSYQKL IRVVLVSYQVIERELMEKNEE Prediction of potential genes in microbial genomes Time: Sun May 29 07:24:20 2011 Seq name: gi|224999985|gb|ACJC01000015.1| Staphylococcus epidermidis W23144 contig00016, whole genome shotgun sequence Length of sequence - 6727 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 408 319 ## COG2367 Beta-lactamase class A - Prom 580 - 639 9.7 + Prom 435 - 494 8.0 2 2 Op 1 3/0.000 + CDS 515 - 2272 679 ## COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component 3 2 Op 2 . + CDS 2262 - 2642 354 ## COG3682 Predicted transcriptional regulator + Term 2739 - 2788 8.6 - Term 2727 - 2774 6.5 4 3 Tu 1 . - CDS 2904 - 3452 634 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 3567 - 3626 6.4 - Term 3575 - 3632 2.3 5 4 Tu 1 . - CDS 3730 - 5196 1327 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 5286 - 5345 4.9 + Prom 5649 - 5708 15.0 6 5 Op 1 24/0.000 + CDS 5733 - 6428 201 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 7 5 Op 2 . + CDS 6430 - 6727 194 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component Predicted protein(s) >gi|224999985|gb|ACJC01000015.1| GENE 1 3 - 408 319 135 aa, chain - ## HITS:1 COG:SAP010 KEGG:ns NR:ns ## COG: SAP010 COG2367 # Protein_GI_number: 16119210 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Staphylococcus aureus N315 # 1 135 1 135 281 224 97.0 3e-59 MKKLIFLIAIALVLSACNSNSSHAKELNDLEKKYNAHIGVYALDTKSGKEVKFNSDKRFA YASTSKAINSAILLEQVPYNKLNKKIHINKDDIVAYSPILEKYVGKDITLKELIEASMAY SDNTANNKIIKEIGG >gi|224999985|gb|ACJC01000015.1| GENE 2 515 - 2272 679 585 aa, chain + ## HITS:1 COG:SAP011_1 KEGG:ns NR:ns ## COG: SAP011_1 COG4219 # Protein_GI_number: 16119211 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component # Organism: Staphylococcus aureus N315 # 1 344 1 344 344 541 94.0 1e-153 MAKLLIMSVVSFCFIFLLLVFFRYILKRYFNYSLNYKVWYLTVLAGLIPFIPIKFSFIKF NNVNNQSPTVESRSHDLNHNINTTKPVQEFTTDIHKFNWDSIDNICTVIWIVLVIILSFK FLKSLLYLKYLKRQSLYLNENEKNKIDTILFNHQYKKNIVIRKAETIQSPITFWYGKYII LIPSSYFKSVIDKRLKYIILHEYAHAKNRDTLHLIIFNIFSIVMSYNPLIHIVKRKIIHD NEVEADRFVLNNINKNEFKTYAESIMDSVLNIPFFNKNILSHSFNGKKSLLKRRLINIKE ANLKKQSKLIPIFICIFTFLLMVIQSQFLMGQSITDYNYKKPLQNDHQILDESKNFGSNS GSFVMYSMKKDKYYIYNEKESRKRYSPDSTYKIYLAMFGLDHHIISDKNSRMSWNHKHYP FESWNKEQDLNTAMQNSVNWYFERISNQIPKNYTAAQLKQLNYGNENLGSYKSYWMEDSL KISNLEQVIVFKNMMEQNNHFSKKAKNQLSSSLLIKKNEKYELYGKTGTGIVNGKYNNGW FVGYVITNHDKYYFATHLSDGKPSGKNAELISEKILKEMGVLNGQ >gi|224999985|gb|ACJC01000015.1| GENE 3 2262 - 2642 354 126 aa, chain + ## HITS:1 COG:SAP012 KEGG:ns NR:ns ## COG: SAP012 COG3682 # Protein_GI_number: 16119212 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 126 1 126 126 181 99.0 4e-46 MANKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKR YKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDIL NDISKK >gi|224999985|gb|ACJC01000015.1| GENE 4 2904 - 3452 634 182 aa, chain - ## HITS:1 COG:SAP013 KEGG:ns NR:ns ## COG: SAP013 COG1961 # Protein_GI_number: 16119213 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 3 180 2 181 197 139 45.0 2e-33 MAKIGYARVSTQDQSLDGQIDTLEEYGCERIFSEKASGRKTKRTELDKCLDYLREGDILV IYKLDRLGRTTKQLIELSQWFDENSIDLHIIDMNVSTKDAMGKMFFTMMSAFAELEANLL SERTKKGLEAARARGRKGGRPSLPDHKKREIKFLYDEQKLTGEEIAKQTGVSRSTVYRML KD >gi|224999985|gb|ACJC01000015.1| GENE 5 3730 - 5196 1327 488 aa, chain - ## HITS:1 COG:BH1900 KEGG:ns NR:ns ## COG: BH1900 COG0488 # Protein_GI_number: 15614463 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 10 473 8 465 538 240 31.0 4e-63 MEQYTIKFNQINHKLTDLRSLNIDHLYAYQFEKIALIGGNGTGKTTLLNMIAQKTKPESG TVETNGEIQYFEQLNMDVENDFNTLDGSLMSELHIPMHTTDSMSGGEKAKYKLANVISNY SPILLLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDRALIDQIADTIWDIQEDGTIRV FKGNYTQYQNQYEQEQLEQQRKYEQYISEKQRLSQASKAKRNQAQQMAQASSKQKNKSIA PDRLSASKQKGTVEKAAQKQAKHIEKRMEHLEEVEKPQSYHEFNFPQNKIYDIHNNYPII AQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMA YYRQLAYEDMRDVSLLQYLMDETDSSESFSRAILNNLGLNEALERSCNVLSGGERTKLSL AVLFSTKANMLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRFVKHVSDKKWELT GQSIHDIT >gi|224999985|gb|ACJC01000015.1| GENE 6 5733 - 6428 201 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 209 5 223 305 82 27 1e-15 MDVLTVEHLTKKIGNKTILKDISLNLKRGQIVGLVGANGAGKTSLMKVILGYSIYQEGNF EVIENKHKKSNVGALIENPGVYPFMSGYDNLKLLNETKNTQDIDTIVSQLKMDEYIHNKA KTYSLGMKQKLGIAIAFLNQPQLIILDEPMNGLDPRAVRDVRELIVKKAEEGVTFLISSH ILSELVKITNSILIINKGKIVTETTEEELNQYKDNDLENVLLSIIDKEDQS >gi|224999985|gb|ACJC01000015.1| GENE 7 6430 - 6727 194 99 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 99 1 99 256 123 72.0 7e-29 MGTLIKQECFKLFKKKSTFIIPIIIMLLMVVQAIISKNYDDVFSPQSSIESAFSGFSWFI FLLIIQASTIISMEFYHGTIKNLLYRKYTRTSIIISKII Prediction of potential genes in microbial genomes Time: Sun May 29 07:24:22 2011 Seq name: gi|224999984|gb|ACJC01000016.1| Staphylococcus epidermidis W23144 contig00017, whole genome shotgun sequence Length of sequence - 5919 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 6, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 4 - 1239 960 ## COG2348 Uncharacterized protein involved in methicillin resistance 2 1 Op 2 . - CDS 1266 - 1661 417 ## SSP0328 putative secretory antigen precursor + Prom 2197 - 2256 5.2 3 2 Tu 1 . + CDS 2443 - 3045 774 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 3091 - 3134 8.2 + Prom 3192 - 3251 9.9 4 3 Tu 1 . + CDS 3313 - 3507 244 ## SE_p601 hypothetical protein + Term 3508 - 3569 10.1 + Prom 3519 - 3578 7.2 5 4 Op 1 . + CDS 3603 - 4403 613 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component + Prom 4412 - 4471 4.3 6 4 Op 2 . + CDS 4500 - 4778 122 ## gi|242241660|ref|ZP_04796105.1| hypothetical protein HMPREF0791_0186 + Prom 4829 - 4888 3.1 7 5 Tu 1 . + CDS 4970 - 5137 78 ## gi|242241661|ref|ZP_04796106.1| hypothetical protein HMPREF0791_0187 + Term 5138 - 5201 6.9 + Prom 5505 - 5564 7.3 8 6 Tu 1 . + CDS 5714 - 5902 175 ## gi|242241662|ref|ZP_04796107.1| hypothetical protein HMPREF0791_0188 Predicted protein(s) >gi|224999984|gb|ACJC01000016.1| GENE 1 4 - 1239 960 411 aa, chain - ## HITS:1 COG:SA2199 KEGG:ns NR:ns ## COG: SA2199 COG2348 # Protein_GI_number: 15927989 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 410 1 411 416 474 61.0 1e-133 MKFVTLTEQEYQLFIEKHVVHYTQSIEHYNYRQKHKTDVHLVGVKDNEEVIAACLLSEAQ VLKIFKYFYSHRGPVLDFNNEKLVECFFTGLTRYLKRHKGLFVLVDPYILENNRDADGRI LKSYDNSNLINQLNHLGYQYQGHSIGYSDTSQIRWLSVLDLEGKNEKDILNEMDYQTRRN IKKTYEMGVEVKTLDISQTDQFFELFRMAEEKHDFKFREKDYFEEMQNIYNNNSALKLAY IDLKKYLNQLNNKELVLNEQIEEIKAKLKDNPNSKKNKNKYQELNKQLTSNRKHITETEN LIKIDGDVLHLASAYYIWNKDEVYYLSSGSNPEYNQFMGAYRLQWDMIKFALNNNIPRYN FYGITGNFSENAEDYGVQQFKKGFNAHVEEYVGDFIKPIRPIFHKVYKLLK >gi|224999984|gb|ACJC01000016.1| GENE 2 1266 - 1661 417 131 aa, chain - ## HITS:1 COG:no KEGG:SSP0328 NR:ns ## KEGG: SSP0328 # Name: not_defined # Def: putative secretory antigen precursor # Organism: S.saprophyticus # Pathway: not_defined # 52 131 38 143 143 64 35.0 1e-09 MLKKLITYTLLSSIALTGVNMLEYSPKIDQNHIAQVAEIDKYPRPIKKQQPNYHTKNNCT WYVHNKRNQTKRYLPSSFTDAKSWLNEAKRAGFATGKKPIAGSILQTSKGGGGYGTRTLT KKQAVQYNYIY >gi|224999984|gb|ACJC01000016.1| GENE 3 2443 - 3045 774 200 aa, chain + ## HITS:1 COG:lin1944 KEGG:ns NR:ns ## COG: lin1944 COG1028 # Protein_GI_number: 16801010 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Listeria innocua # 1 200 1 199 199 207 57.0 7e-54 MKIVVIGATGTIGKSVSKKLKENNHEVIEVGSKSGDYQLDITSPTEIEQMYKDIKDIDAV VSATGGATFKSLSDMSLEENNVAIKSKLLGQINLVLIGQHYLNKNGSFTLTSGIMMDDPI LLGSSAAMANGGVSGFVTSAAVELKNGLRINNVSPNVVEEALDKYGEFFKGFTAVPVDKV ANAFIKSVEGAQTGQTYKVY >gi|224999984|gb|ACJC01000016.1| GENE 4 3313 - 3507 244 64 aa, chain + ## HITS:1 COG:no KEGG:SE_p601 NR:ns ## KEGG: SE_p601 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 64 1 64 64 84 100.0 1e-15 MKKISKLLIAFSLVTTLSYASASTGFMNDNSHEAFAKSKKKKHKGNGNKHNCFPVGNSEF CTTP >gi|224999984|gb|ACJC01000016.1| GENE 5 3603 - 4403 613 266 aa, chain + ## HITS:1 COG:SA0594 KEGG:ns NR:ns ## COG: SA0594 COG1682 # Protein_GI_number: 15926315 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Staphylococcus aureus N315 # 7 266 14 277 277 288 57.0 7e-78 MKSSLFILKEHFNNLYLMKRLAQFEMKISNKNNYLGTAWELINPSIQIFMYWFIFGLGFR NNRTVENIPFIFWLIVGISMWFFVNQGILNGTKAVTSKYKQVAKMNFPLSILSSYIVLSK FYTHILLLILIMLICALNGYYPTIYTLQLLIFIPYTLLLTMTITLLTSTLAVIIRDVQML MQALMRIIFFISSILYLPTNTLVLKVIQFNPIYFIAESYRAAILYQNWFFITHWKLSLYN LAFLLITFVLGSLLHVKYREQFADFL >gi|224999984|gb|ACJC01000016.1| GENE 6 4500 - 4778 122 92 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241660|ref|ZP_04796105.1| ## NR: gi|242241660|ref|ZP_04796105.1| hypothetical protein HMPREF0791_0186 [Staphylococcus epidermidis W23144] # 1 92 1 92 92 137 100.0 3e-31 MLLRETEDYEKYYKIGNVVMGTAFICIVIFSLMKSTPLSDLSFLKYIHFASEFLLIAGLI INSVPDFLTWNIKNIIFDLIIISFLIVFFIWV >gi|224999984|gb|ACJC01000016.1| GENE 7 4970 - 5137 78 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241661|ref|ZP_04796106.1| ## NR: gi|242241661|ref|ZP_04796106.1| hypothetical protein HMPREF0791_0187 [Staphylococcus epidermidis W23144] # 1 55 1 55 55 70 100.0 3e-11 MNLKKSDIINKKEIYMLLKNKIYLAIIIVVFIICSIIGLNKNIIENPLGEKFFIH >gi|224999984|gb|ACJC01000016.1| GENE 8 5714 - 5902 175 62 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241662|ref|ZP_04796107.1| ## NR: gi|242241662|ref|ZP_04796107.1| hypothetical protein HMPREF0791_0188 [Staphylococcus epidermidis W23144] # 1 62 5 66 66 107 100.0 2e-22 MTIVGNLSKNNAQKLSEFMSVKPQIKLLDMLQPDWKTIERTSDSRLTPISGNYIKTLSLN SY Prediction of potential genes in microbial genomes Time: Sun May 29 07:24:40 2011 Seq name: gi|224999983|gb|ACJC01000017.1| Staphylococcus epidermidis W23144 contig00018, whole genome shotgun sequence Length of sequence - 1608 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 519 - 552 4.0 1 1 Op 1 . - CDS 592 - 792 343 ## SAAV_c12 putative plasmid replication-associated protein 2 1 Op 2 . - CDS 798 - 1607 683 ## COG1192 ATPases involved in chromosome partitioning Predicted protein(s) >gi|224999983|gb|ACJC01000017.1| GENE 1 592 - 792 343 66 aa, chain - ## HITS:1 COG:no KEGG:SAAV_c12 NR:ns ## KEGG: SAAV_c12 # Name: not_defined # Def: putative plasmid replication-associated protein # Organism: S.aureus_ED98 # Pathway: not_defined # 3 66 20 83 83 89 79.0 3e-17 MAGFLDDIDTSSVKYTENYKPISKSTTMRVDTNLKKRLSQMALDQDTSIKAIVDNVLNEF LEKKGY >gi|224999983|gb|ACJC01000017.1| GENE 2 798 - 1607 683 269 aa, chain - ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 7 269 20 286 293 154 37.0 2e-37 IGGFYLSVITVGNFKGGVGKTTVATILSYIASEQYGKKVLLIDFDPQGNATQIMKRTYVE APEENESFIDMLRTGNLENSMIRLSSKLSLLPADSSLANLSDIISKTDILKKRYILKNVV EKIREMYDFDHIFIDVPPTINSDFTNNAVYASDYILMVFQTQQSAYESSLSFVNFLRDRK NESNLPFELIGAVPVLIKRSGKVDEKILNMSKNAFSQALFENQIYQRERIKKFGAEGIRN KDMHDKKVIHMFNKVYIELVDRIQVIESE Prediction of potential genes in microbial genomes Time: Sun May 29 07:24:42 2011 Seq name: gi|224999982|gb|ACJC01000018.1| Staphylococcus epidermidis W23144 contig00019, whole genome shotgun sequence Length of sequence - 1819 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 167 - 226 9.8 1 1 Tu 1 . + CDS 324 - 1577 997 ## SAAV_c14 replication protein Predicted protein(s) >gi|224999982|gb|ACJC01000018.1| GENE 1 324 - 1577 997 417 aa, chain + ## HITS:1 COG:no KEGG:SAAV_c14 NR:ns ## KEGG: SAAV_c14 # Name: not_defined # Def: replication protein # Organism: S.aureus_ED98 # Pathway: not_defined # 5 407 6 396 427 379 55.0 1e-104 MTKQRFTKLYKFLFEDSTFNKLSIKAKLLYALITERQNLSKLSAKQHGIQSQFIDANGRL FSIYTNKELMNKINISEPTVINLKKQLIAFGLLEEIRLGKNKPNRLYPKKPYDEYFYVHD VDEFYRLPHSLFSNPKYKNLKAETIVAYAVYLSRYEYSVYKNHFSDKSGEIYCHFSNEKM AEFLGVSTRKVERIKKELVVSGLMINKRATFGKANNLYIKLPKPFHIKELKNCRVRNLKI VGTGTKKLSGSELKNCRTNNTDISNTDVSDTNISDTNDLNDTYEINKNTNYHSNHTNHEY TEFNNDALKFQVLEELPQQIKEYLNKFEIREIRIIKSVLLKGKKSFNSNHDTFYRLEDFE FEIVSVLKRFKAMLIQKNESVDAMQGYLMQSIKAELEEAHALNMRRQNIKQHNIFNQ Prediction of potential genes in microbial genomes Time: Sun May 29 07:24:48 2011 Seq name: gi|224999981|gb|ACJC01000019.1| Staphylococcus epidermidis W23144 contig00022, whole genome shotgun sequence Length of sequence - 1225 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 735 - 1151 181 ## gi|242241667|ref|ZP_04796112.1| conserved hypothetical protein Predicted protein(s) >gi|224999981|gb|ACJC01000019.1| GENE 1 735 - 1151 181 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241667|ref|ZP_04796112.1| ## NR: gi|242241667|ref|ZP_04796112.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 138 1 138 138 223 100.0 3e-57 MKSKQTLKKLYYDLFSTNFLINYGYFDITPKNNQDLTDLNNYGKADAFYLKIFNMSKLAE YISSNPFYNKKFLENEKVYSTEPLTFTIPIYLKMSNRSRKTYNKALTKLKLHGIQENKHL IFQQAKIWNGLKSASKKH Prediction of potential genes in microbial genomes Time: Sun May 29 07:24:56 2011 Seq name: gi|224999980|gb|ACJC01000020.1| Staphylococcus epidermidis W23144 contig00023, whole genome shotgun sequence Length of sequence - 2039 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 - CDS 1 - 886 976 ## COG0210 Superfamily I DNA and RNA helicases 2 1 Op 2 . - CDS 883 - 1575 785 ## COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold - Prom 1788 - 1847 5.8 Predicted protein(s) >gi|224999980|gb|ACJC01000020.1| GENE 1 1 - 886 976 295 aa, chain - ## HITS:1 COG:SA1721 KEGG:ns NR:ns ## COG: SA1721 COG0210 # Protein_GI_number: 15927479 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 1 295 1 295 730 533 91.0 1e-151 MNALVKNMNSEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITF TNKAAKEMKTRVEHLVGEEAQVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSV IKDVLKSENIDSKRFEPRMFIGAISNLKNELKTPEDAQKEANDFHSQMVATVYKGYQRQL SRNEALDFDDLIMTTINLFERVPETLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLANKFK NLCVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTKNILNAANEV >gi|224999980|gb|ACJC01000020.1| GENE 2 883 - 1575 785 230 aa, chain - ## HITS:1 COG:SA1722 KEGG:ns NR:ns ## COG: SA1722 COG1646 # Protein_GI_number: 15927480 # Func_class: R General function prediction only # Function: Predicted phosphate-binding enzymes, TIM-barrel fold # Organism: Staphylococcus aureus N315 # 1 230 1 230 230 342 73.0 2e-94 MYDITKWKHMFKLDPAKSISDEDLEALCMSNTDAIIIGGTDDVTEDNVIHLMSRVRRYPL PLVLEVSNVESVMPGFDFYFIPTVMNSKDTKYHNEILLEALKKYGHVINFDEVFFEGYVV LNANSKVAKITKAYTQLDIEDVEAYAQMAEELYRFPIMYVEYSGTYGDVDKVRAIANMLQ HTQLFYGGGITNIDKAKEMSNIADTIVVGDIIYNDIKKALKTVKIKESNK Prediction of potential genes in microbial genomes Time: Sun May 29 07:24:56 2011 Seq name: gi|224999979|gb|ACJC01000021.1| Staphylococcus epidermidis W23144 contig00026, whole genome shotgun sequence Length of sequence - 209 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 22 - 208 152 ## Predicted protein(s) >gi|224999979|gb|ACJC01000021.1| GENE 1 22 - 208 152 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRILIMLAVYSMLKVTPSSPMRSCSYTHASCPSGRTTATLPAAMIVPGATSCSHGRCSPD IA Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:01 2011 Seq name: gi|224999978|gb|ACJC01000022.1| Staphylococcus epidermidis W23144 contig00029, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:01 2011 Seq name: gi|224999977|gb|ACJC01000023.1| Staphylococcus epidermidis W23144 contig00030, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:01 2011 Seq name: gi|224999976|gb|ACJC01000024.1| Staphylococcus epidermidis W23144 contig00031, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:02 2011 Seq name: gi|224999975|gb|ACJC01000025.1| Staphylococcus epidermidis W23144 contig00032, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 241 178 ## PROTEIN SUPPORTED gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc Predicted protein(s) >gi|224999975|gb|ACJC01000025.1| GENE 1 2 - 241 178 80 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916131|ref|ZP_01904653.1| 50S ribosomal protein L25/general stress protein Ctc [Roseobacter sp. AzwK-3b] # 1 80 87 166 263 73 45 2e-14 QFRERDAQTPVVLMGYLNPVEIHGYAAFAKAAVEAGVDGVLLVDLPPEEAGEAQQAFDAA GLALVLLASPTTSEARADKL Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:02 2011 Seq name: gi|224999974|gb|ACJC01000026.1| Staphylococcus epidermidis W23144 contig00035, whole genome shotgun sequence Length of sequence - 232 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 28 - 232 243 ## gi|242241673|ref|ZP_04796118.1| hypothetical protein HMPREF0791_0199 Predicted protein(s) >gi|224999974|gb|ACJC01000026.1| GENE 1 28 - 232 243 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241673|ref|ZP_04796118.1| ## NR: gi|242241673|ref|ZP_04796118.1| hypothetical protein HMPREF0791_0199 [Staphylococcus epidermidis W23144] # 1 68 1 68 68 96 100.0 5e-19 MIFRKRAAGLAARLGDRVEQQREQLWRHGLAPAALEPQRIPARLGEHQPAVALLGRQAAE EAGIGDAH Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:07 2011 Seq name: gi|224999973|gb|ACJC01000027.1| Staphylococcus epidermidis W23144 contig00038, whole genome shotgun sequence Length of sequence - 1112 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 356 - 415 8.2 1 1 Tu 1 . + CDS 443 - 961 353 ## gi|242241675|ref|ZP_04796120.1| hypothetical protein HMPREF0791_0201 + Term 1006 - 1040 -0.5 Predicted protein(s) >gi|224999973|gb|ACJC01000027.1| GENE 1 443 - 961 353 172 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241675|ref|ZP_04796120.1| ## NR: gi|242241675|ref|ZP_04796120.1| hypothetical protein HMPREF0791_0201 [Staphylococcus epidermidis W23144] # 1 172 1 172 172 283 100.0 3e-75 MIYDISERLKKYTESHDQKENLFHFGMYVALTSLAGTIIYMFSSTAIWITPLNMSVASFL ILLMGMYKRKDKRAFLLFYMHGTQKKEIIKSLTCGIISLLVGFATFNLLKWFNLSYKINY NILAIFKNSFHFLLEFLFTMWTMFFLTIAMGLILKPIALLIVKRVMDVRKDL Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:15 2011 Seq name: gi|224999972|gb|ACJC01000028.1| Staphylococcus epidermidis W23144 contig00040, whole genome shotgun sequence Length of sequence - 224 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:16 2011 Seq name: gi|224999971|gb|ACJC01000029.1| Staphylococcus epidermidis W23144 contig00042, whole genome shotgun sequence Length of sequence - 226 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 226 70 ## EcolC_2148 outer membrane autotransporter Predicted protein(s) >gi|224999971|gb|ACJC01000029.1| GENE 1 1 - 226 70 75 aa, chain - ## HITS:1 COG:no KEGG:EcolC_2148 NR:ns ## KEGG: EcolC_2148 # Name: not_defined # Def: outer membrane autotransporter # Organism: E.coli_ATCC8739 # Pathway: not_defined # 1 75 712 786 1806 120 100.0 2e-26 GNTYSGKTLVNDGLLTIASHTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTLTNALK GDGLMRVQLSSSDKM Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:18 2011 Seq name: gi|224999970|gb|ACJC01000030.1| Staphylococcus epidermidis W23144 contig00044, whole genome shotgun sequence Length of sequence - 357 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 306 359 ## gi|1170302|sp|P46028|HLY2_ACTPL RecName: Full=21 kDa hemolysin; Flags: Precursor gi|299398|gb|AAB26060.1| 21 kda hemolysin Predicted protein(s) >gi|224999970|gb|ACJC01000030.1| GENE 1 3 - 306 359 101 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|1170302|sp|P46028|HLY2_ACTPL ## NR: gi|1170302|sp|P46028|HLY2_ACTPL RecName: Full=21 kDa hemolysin; Flags: Precursor # 1 41 1 41 194 98 100.0 2e-19 MRTRSRSTVRPLWPPPSPARFATWSHYRLRDHGDHTRPVDPLRRTHRGRHHRRHRCGCWR LYRRHHRWGRSGSPLRAHERLFRRGYGGRPRGRGTVGRHLL Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:25 2011 Seq name: gi|224999969|gb|ACJC01000031.1| Staphylococcus epidermidis W23144 contig00045, whole genome shotgun sequence Length of sequence - 228 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:25 2011 Seq name: gi|224999968|gb|ACJC01000032.1| Staphylococcus epidermidis W23144 contig00046, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 13 - 241 256 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase Predicted protein(s) >gi|224999968|gb|ACJC01000032.1| GENE 1 13 - 241 256 76 aa, chain + ## HITS:1 COG:ECs0477_1 KEGG:ns NR:ns ## COG: ECs0477_1 COG0301 # Protein_GI_number: 15829731 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Escherichia coli O157:H7 # 1 76 198 273 402 165 100.0 2e-41 MRRGCRVHYCFFNLGGAAHEIGVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDD GQMGVILKRMMVRAAS Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:26 2011 Seq name: gi|224999967|gb|ACJC01000033.1| Staphylococcus epidermidis W23144 contig00047, whole genome shotgun sequence Length of sequence - 235 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:26 2011 Seq name: gi|224999966|gb|ACJC01000034.1| Staphylococcus epidermidis W23144 contig00049, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 74 - 239 103 ## Predicted protein(s) >gi|224999966|gb|ACJC01000034.1| GENE 1 74 - 239 103 55 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSRVTVALRLVMGKGFFARHKHPLHWCVQQIVNGIRCRVTCSQRCRCPLHQTIQR Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:30 2011 Seq name: gi|224999965|gb|ACJC01000035.1| Staphylococcus epidermidis W23144 contig00050, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:31 2011 Seq name: gi|224999964|gb|ACJC01000036.1| Staphylococcus epidermidis W23144 contig00052, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:31 2011 Seq name: gi|224999963|gb|ACJC01000037.1| Staphylococcus epidermidis W23144 contig00054, whole genome shotgun sequence Length of sequence - 239 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 69 - 237 161 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family Predicted protein(s) >gi|224999963|gb|ACJC01000037.1| GENE 1 69 - 237 161 56 aa, chain + ## HITS:1 COG:ECs3271 KEGG:ns NR:ns ## COG: ECs3271 COG1914 # Protein_GI_number: 15832525 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Escherichia coli O157:H7 # 1 56 243 298 412 80 100.0 5e-16 MTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAYLTLQPLLSHAAATVFGLSLVAA Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:32 2011 Seq name: gi|224999962|gb|ACJC01000038.1| Staphylococcus epidermidis W23144 contig00055, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:32 2011 Seq name: gi|224999961|gb|ACJC01000039.1| Staphylococcus epidermidis W23144 contig00058, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 225 135 ## COG0173 Aspartyl-tRNA synthetase Predicted protein(s) >gi|224999961|gb|ACJC01000039.1| GENE 1 3 - 225 135 74 aa, chain - ## HITS:1 COG:ZaspS KEGG:ns NR:ns ## COG: ZaspS COG0173 # Protein_GI_number: 15802279 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Escherichia coli O157:H7 EDL933 # 1 74 152 225 590 160 100.0 4e-40 MDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQ IVKCFRDEDLRADR Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:33 2011 Seq name: gi|224999960|gb|ACJC01000040.1| Staphylococcus epidermidis W23144 contig00059, whole genome shotgun sequence Length of sequence - 415 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 3 - 194 110 ## gi|289524486|ref|ZP_06441340.1| GCN5-related N-acetyltransferase 2 1 Op 2 . + CDS 191 - 391 68 ## ECSE_P1-0013 hypothetical protein Predicted protein(s) >gi|224999960|gb|ACJC01000040.1| GENE 1 3 - 194 110 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|289524486|ref|ZP_06441340.1| ## NR: gi|289524486|ref|ZP_06441340.1| GCN5-related N-acetyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] # 1 63 1 63 63 106 98.0 4e-22 ILAENCECANQPLAEHIHPVRHLQQPHAAHLGQRWVLATGAHDRAPVVEDPARLAGLPYW LAE >gi|224999960|gb|ACJC01000040.1| GENE 2 191 - 391 68 66 aa, chain + ## HITS:1 COG:no KEGG:ECSE_P1-0013 NR:ns ## KEGG: ECSE_P1-0013 # Name: not_defined # Def: hypothetical protein # Organism: E.coli_SE11 # Pathway: not_defined # 1 40 1 40 63 65 100.0 4e-10 MNHRYASEREATAAAKRLRPEQQHEWSSVSVFRKVWKRGSQRPAPLCSGSASQDAAGYPV EHLHLY Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:41 2011 Seq name: gi|224999959|gb|ACJC01000041.1| Staphylococcus epidermidis W23144 contig00060, whole genome shotgun sequence Length of sequence - 1824 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 12 - 94 67.0 # Leu TAG 0 0 + TRNA 98 - 172 94.9 # Gly GCC 0 0 + TRNA 184 - 272 75.3 # Leu TAA 0 0 + TRNA 285 - 358 68.4 # Arg ACG 0 0 + TRNA 368 - 441 84.2 # Pro TGG 0 0 + TRNA 458 - 533 89.0 # Ala TGC 0 0 + TRNA 558 - 634 82.2 # Met CAT 0 0 + TRNA 655 - 728 88.1 # Met CAT 0 0 + TRNA 738 - 827 61.8 # Ser TGA 0 0 + TRNA 835 - 910 86.2 # Asp GTC 0 0 + TRNA 948 - 1040 74.1 # Ser TGA 0 0 + TRNA 1052 - 1125 75.9 # Met CAT 0 0 + TRNA 1230 - 1302 78.7 # Phe GAA 0 0 + TRNA 1311 - 1386 92.9 # Thr TGT 0 0 + TRNA 1393 - 1476 77.6 # Tyr GTA 0 0 + TRNA 1485 - 1558 66.6 # Trp CCA 0 0 + TRNA 1561 - 1633 67.6 # His GTG 0 0 + TRNA 1645 - 1716 70.3 # Gln TTG 0 0 + TRNA 1722 - 1795 79.6 # Cys GCA 0 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:41 2011 Seq name: gi|224999958|gb|ACJC01000042.1| Staphylococcus epidermidis W23144 contig00061, whole genome shotgun sequence Length of sequence - 482 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 19 - 93 94.9 # Gly GCC 0 0 + TRNA 105 - 193 75.3 # Leu TAA 0 0 + TRNA 206 - 282 73.2 # Arg ACG 0 0 + TRNA 309 - 382 86.8 # Pro TGG 0 0 + TRNA 397 - 472 89.0 # Ala TGC 0 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:42 2011 Seq name: gi|224999957|gb|ACJC01000043.1| Staphylococcus epidermidis W23144 contig00064, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 240 232 ## COG3696 Putative silver efflux pump Predicted protein(s) >gi|224999957|gb|ACJC01000043.1| GENE 1 3 - 240 232 79 aa, chain - ## HITS:1 COG:ECs0613 KEGG:ns NR:ns ## COG: ECs0613 COG3696 # Protein_GI_number: 15829867 # Func_class: P Inorganic ion transport and metabolism # Function: Putative silver efflux pump # Organism: Escherichia coli O157:H7 # 1 79 668 746 1045 150 100.0 7e-37 IDMLSTGIKSPIGIKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEIN REKAARYGMTVADVQLFVT Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:42 2011 Seq name: gi|224999956|gb|ACJC01000044.1| Staphylococcus epidermidis W23144 contig00076, whole genome shotgun sequence Length of sequence - 220 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:43 2011 Seq name: gi|224999955|gb|ACJC01000045.1| Staphylococcus epidermidis W23144 contig00078, whole genome shotgun sequence Length of sequence - 238 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 238 97 ## Predicted protein(s) >gi|224999955|gb|ACJC01000045.1| GENE 1 1 - 238 97 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no IETEAFCISVITSFNATPGSPRVNFSACVRAAVCVSLMRSSAACSCPAKLMVGCGSDSCA RALIAVACNWLITPSIPCI Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:48 2011 Seq name: gi|224999954|gb|ACJC01000046.1| Staphylococcus epidermidis W23144 contig00079, whole genome shotgun sequence Length of sequence - 241 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 212 250 ## Predicted protein(s) >gi|224999954|gb|ACJC01000046.1| GENE 1 3 - 212 250 69 aa, chain + ## HITS:0 COG:no KEGG:no NR:no NLRAVFHLLTRDIQRLAVFLFFDQALELSGTGDVGAFTHVHKQAIFANVQRLQAGQTAGY GNFRQFARR Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:53 2011 Seq name: gi|224999953|gb|ACJC01000047.1| Staphylococcus epidermidis W23144 contig00080, whole genome shotgun sequence Length of sequence - 229 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:53 2011 Seq name: gi|224999952|gb|ACJC01000048.1| Staphylococcus epidermidis W23144 contig00081, whole genome shotgun sequence Length of sequence - 220 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 218 336 ## Predicted protein(s) >gi|224999952|gb|ACJC01000048.1| GENE 1 2 - 218 336 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no SGCGDGADRLRGCGARRHLRDRRGGRDRPRSRWARRGRGGIVDRGSADELRGVVRARLDA AHPGGWIACGDA Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:59 2011 Seq name: gi|224999951|gb|ACJC01000049.1| Staphylococcus epidermidis W23144 contig00082, whole genome shotgun sequence Length of sequence - 240 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:25:59 2011 Seq name: gi|224999950|gb|ACJC01000050.1| Staphylococcus epidermidis W23144 contig00089, whole genome shotgun sequence Length of sequence - 1036 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 94 - 291 246 ## SE2245 hypothetical protein 2 1 Op 2 . - CDS 278 - 901 507 ## SERP2278 hypothetical protein - Prom 939 - 998 3.0 Predicted protein(s) >gi|224999950|gb|ACJC01000050.1| GENE 1 94 - 291 246 65 aa, chain - ## HITS:1 COG:no KEGG:SE2245 NR:ns ## KEGG: SE2245 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 65 1 65 190 134 100.0 7e-31 MQEDRKFEVKWRLVNSSTFMYGTKLRFNQDNIYFENPLMPSGTIIHSWYMLTDFAEDRVS PKLPI >gi|224999950|gb|ACJC01000050.1| GENE 2 278 - 901 507 207 aa, chain - ## HITS:1 COG:no KEGG:SERP2278 NR:ns ## KEGG: SERP2278 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 207 316 522 522 426 99.0 1e-118 MKRMNAPFILIADPRIEGGAFYLGSENYEQAIRKVIQNALDYLGFANNQLILSGLSMGSF GALYYATKLNPAAVIVGKPLINLGTIANNMKLVRPNDFGTSLDILRLNQNDITNKDVVQL DNHFWKQIQHSDLSMTTFAIAYMEHDDYDKYAFQDLLPVLTKQHARVISKRIPGRHNDDS ATVTHWFINFYHLIMEERFGRVTHARR Prediction of potential genes in microbial genomes Time: Sun May 29 07:26:05 2011 Seq name: gi|224999949|gb|ACJC01000051.1| Staphylococcus epidermidis W23144 contig00090, whole genome shotgun sequence Length of sequence - 1381 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 1 - 1108 881 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 2 1 Op 2 . - CDS 1101 - 1379 229 ## SE2245 hypothetical protein Predicted protein(s) >gi|224999949|gb|ACJC01000051.1| GENE 1 1 - 1108 881 369 aa, chain - ## HITS:1 COG:SA2442 KEGG:ns NR:ns ## COG: SA2442 COG0653 # Protein_GI_number: 15928235 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Staphylococcus aureus N315 # 1 369 1 369 796 499 67.0 1e-141 MAKGVNQIINNIRLRKLRKILNQINALSEEFSNFSDEALQAKTKEFKVYLNDNKSSLNHI LPQAYATVREASKRVLGMYPKDVQILGAIAMHQGNIAEMQTGEGKTLTATMPLYLNALTG KGAYLITTNDYLAKRDFLEMKPLYEWLGLSVSLGFVDIPEYEYAENEKYELYHHDIVYTT NGRLGFDYLIDNLADDIRAKFLPKLNFAIIDEVDSIILDAAQTPLVISGAPREQSNLFHI VKTFVETLEKDKDFIVNFNKKEVWLTDEGSEKANHYFKVNNIYQQQYFDLVRMIHLSLRA KYLFKYNLDYFIFDGEIVLIDRITGRMLPGTKLQSGLHQAIEALENVEISQDMSVMATIT FQNLFKQFD >gi|224999949|gb|ACJC01000051.1| GENE 2 1101 - 1379 229 92 aa, chain - ## HITS:1 COG:no KEGG:SE2245 NR:ns ## KEGG: SE2245 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 92 99 190 190 159 93.0 3e-38 ILSHQILKNKKENIVYPREAYSYDLELINAGMNHLSFRNIIVQELREDSNQAYETTKYID PEKKLKVINQIITNIRTHHLDTSNYHRSDMNG Prediction of potential genes in microbial genomes Time: Sun May 29 07:26:12 2011 Seq name: gi|224999948|gb|ACJC01000052.1| Staphylococcus epidermidis W23144 contig00091, whole genome shotgun sequence Length of sequence - 15978 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 10, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 367 - 404 4.2 1 1 Op 1 2/0.667 - CDS 540 - 1004 364 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 1027 - 1086 7.4 2 1 Op 2 2/0.667 - CDS 1088 - 2038 938 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 3 1 Op 3 . - CDS 2041 - 2499 389 ## COG1225 Peroxiredoxin - Prom 2525 - 2584 8.2 4 2 Tu 1 . + CDS 2580 - 3869 1364 ## COG0001 Glutamate-1-semialdehyde aminotransferase + Term 3880 - 3927 8.6 + Prom 4005 - 4064 7.3 5 3 Tu 1 . + CDS 4176 - 5270 788 ## COG4129 Predicted membrane protein + Term 5290 - 5322 -0.7 - Term 5371 - 5409 6.1 6 4 Tu 1 . - CDS 5421 - 7157 238 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 7303 - 7362 8.4 7 5 Tu 1 . - CDS 7399 - 7941 530 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E - Prom 7970 - 8029 4.8 8 6 Tu 1 . - CDS 8048 - 9091 473 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase - Prom 9160 - 9219 6.8 + Prom 9184 - 9243 11.5 9 7 Tu 1 . + CDS 9271 - 10245 987 ## COG1988 Predicted membrane-bound metal-dependent hydrolases + Term 10344 - 10399 15.3 - Term 10332 - 10387 15.3 10 8 Op 1 . - CDS 10442 - 11257 491 ## SERP1408 hypothetical protein 11 8 Op 2 . - CDS 11266 - 12783 1223 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 12 8 Op 3 . - CDS 12799 - 13113 456 ## SE1557 hypothetical protein 13 8 Op 4 1/1.000 - CDS 13106 - 13909 788 ## COG2137 Uncharacterized protein conserved in bacteria - Prom 13986 - 14045 11.2 - Term 14118 - 14154 -0.7 14 9 Tu 1 . - CDS 14188 - 14997 815 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Prom 15092 - 15151 7.0 - Term 15213 - 15261 4.1 15 10 Tu 1 . - CDS 15321 - 15839 742 ## COG0693 Putative intracellular protease/amidase - Prom 15877 - 15936 6.1 Predicted protein(s) >gi|224999948|gb|ACJC01000052.1| GENE 1 540 - 1004 364 154 aa, chain - ## HITS:1 COG:SA1678 KEGG:ns NR:ns ## COG: SA1678 COG0735 # Protein_GI_number: 15927435 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 5 152 1 148 148 263 87.0 8e-71 MVKKVSAELESIDHELEESIASLRQAGVRITPQRQAIMRYLISSHSHPTADEIYQALSPK FPNISVATIYNNLRVFKDIGIVKELTYGDSSSRFDFNTHNHYHIICEKCGKIVDFHYPQL DEVEQLAQHVTDFDVTHHRMEIYGVCKDCKEEEN >gi|224999948|gb|ACJC01000052.1| GENE 2 1088 - 2038 938 316 aa, chain - ## HITS:1 COG:SA1679 KEGG:ns NR:ns ## COG: SA1679 COG0111 # Protein_GI_number: 15927436 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 316 1 316 316 381 62.0 1e-105 MKIVSLNRLNEIENELRKQFPNEEFKFYDKAINIPINDRKTMDILIGYDGKIDRHFIEHC INLKWIGWFATGVNNLPLNYIKERDIILTNGKGIQAKQVSEYIMTFILDDYKKMKTSYRN QLEKNYDSRITGKRLNEDTLLLLGTGAIAQRAAYLAKAFGMKVIGVSKSGKNVEQFDEVY TIEELDNVIERANIIVNALPETEETIYLLKRKHFIQMDNNALFINVGRGTIVDEEVLINV LKDRLIRHAYLDVFEKEPLSKDNPLYDLDNVTITAHITGNDSNNNREATDIFKKNLEHFL NNYDVIENKVDLDYGY >gi|224999948|gb|ACJC01000052.1| GENE 3 2041 - 2499 389 152 aa, chain - ## HITS:1 COG:SA1680 KEGG:ns NR:ns ## COG: SA1680 COG1225 # Protein_GI_number: 15927437 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Staphylococcus aureus N315 # 1 150 1 150 151 222 75.0 2e-58 MISKGEQFPSFSLENQDGNFISNETIKGRKTILYFYPRDNTPTCTTEACEFRDHIEDFNQ LDVDIYGISADSKKKHQNFIKKHQLNFDLLVDKDYLLANKVGVYQLKKSFGKENMGIVRT TFILDENGNIIDVIENVKVKTQIETIKNILEG >gi|224999948|gb|ACJC01000052.1| GENE 4 2580 - 3869 1364 429 aa, chain + ## HITS:1 COG:SA1681 KEGG:ns NR:ns ## COG: SA1681 COG0001 # Protein_GI_number: 15927438 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Staphylococcus aureus N315 # 1 429 1 429 429 758 90.0 0 MKFTESERLQQLSNEYILGGVNSPSRSYKAVGGGAPVVMKEGHGAYLYDVDGNKYIDYLQ AYGPIITGHAHPHITEAIQDQAAKGVLYGTPTELEIKFSKKLREAVPSLEKIRFVNSGTE AVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPQSVAQEVI TVPFNDIESYREAIDYWKDDIAAVLVEPIVGNFGMVMPQPGFLEEVNKISHDNGTLVIYD EVITAFRFHYGAAQDLLGVKPDLTAFGKIVGGGLPIGGYGGRQDIMEHVAPLGPAYQAGT MAGNPLSMRAGIALLEVLEQEGVYDKLDQLGRRLEEGLQKLIDKHQITATINRIYGSLTL YFTNEKVTHYEQVENSDGDAFAQFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIDRTLEA ADYAFSKMK >gi|224999948|gb|ACJC01000052.1| GENE 5 4176 - 5270 788 364 aa, chain + ## HITS:1 COG:SA1682 KEGG:ns NR:ns ## COG: SA1682 COG4129 # Protein_GI_number: 15927439 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 364 1 364 364 545 80.0 1e-155 MRLGARIFKTGIAIILAMSIASLLPDNIGLKTLAGVSAVVAMQPSVYRSIKTVSEQAIGN VIGALLAVTMVTIFSDNFIIMGVTVILLIAILFQFNLAHVATLASVTALIIMGQHTGSFY VAAFFRFVLVMIGVLSSSIVNLIFLPPKFETKIYYNSMNISSDIFVWFKLVLNDTSEFHN IKQDGDQLNSRINKLEKIFDYYNEERPLTKKHIYQQNRKKILFREVVRTTRQAYEVLKRM SRYQNDLYQLNNQLLLQIKLELDSLVTLHEQIFKSLSKKARYDVTQLDYEVDNPQKKNLM DAFQQELIKNPHQTQYSYSNMMQIIAEIEEYRYQLEHLDRIRLSFFTYHRSDTDIDISDE DFDL >gi|224999948|gb|ACJC01000052.1| GENE 6 5421 - 7157 238 578 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 355 564 15 228 245 96 31 1e-19 MIKRYLKFVKPYRYRIIATIIVGIIKFGIPMLIPLLIKYAIDGVINNHSLTNQEKFSHLG VAIGIALFIFLIVRPPIEFIRQYLAQWTSNKILYDIRKQLYNHLQALSARFYANNQVGQV ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTFAAIFIFPFYILTVYF FFGRLRKLTRVRSQALAEVQGFLHERVQGMSVIKSFAIEDNEAKNFDNHNKNFLQRAFQH TRWNAYSFAAINTVTDLGPIIVIGVGSYLAITGSITVGTLAAFVGYLEQLFGPLRRLVSS FTTLTQSFASMDRVFQLMDEDYDIKNGIGAQPIKISEGQIDLKHVSFKYNENEKEVLHDI NLTINKGETVAFVGMSGGGKSTLINLIPRFYDVTQGEILIDHHNVKEFLTGSLRNQIGLV QQDNILFSDTVKENILLGRPDATDDEVVEAAKMANAHDFISNLPNGYDTEVGERGVKLSG GQKQRLSIARIFLNNPPVLILDEATSALDLESEAIIQEALDVLSKDRTTLIVAHRLSTIT HADRIVVMENGRIVETGTHQQLINKRGAYEHLYSIQNL >gi|224999948|gb|ACJC01000052.1| GENE 7 7399 - 7941 530 180 aa, chain - ## HITS:1 COG:SA1684 KEGG:ns NR:ns ## COG: SA1684 COG3557 # Protein_GI_number: 15927441 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Staphylococcus aureus N315 # 1 180 1 180 180 349 96.0 2e-96 MVKESIPKEGENIKIQSYKHDGNIHRVWSETTILKGTEHVIIGGNDHTLVTESDGRTWIT REPAIVYFHSEYWFNVICMFREDGIYYYCNLSSPFACDEEALKYIDYDLDIKVYPNGKYH LLDEDEYEQHMNQMNYPHDIDIILRRNVDILQQWIEQKKGPFAPDFIKVWKERYKKIRDY >gi|224999948|gb|ACJC01000052.1| GENE 8 8048 - 9091 473 347 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 7 301 11 304 378 186 38 7e-47 MYLENSFKKDIEDWFHKNQRDMPWRETTNPYYIWLSEVMLQQTQVNTVIDYYYRFIHRFP TIQSLSEASEDEVLKYWEGLGYYSRARNFHTAVKEVNNNYDGEVPYDPETFKKLKGVGPY TQAAVMSIAFNHPLATVDGNVFRVWSRLNNDYRDIKLQSTRKAFEQELHPYVLKDAGTFN QAMMELGALVCTPKSPLCLFCPIQEHCEAFHMGTAQELPVKTKNLNKKNVEQKVFLIRND NGQYLLEKRKEKLLNGMWQFPMREQTNANDVISDDLGKRIETINEPVFKLKHQFTHLTWD IEVYNVTAPLNIQENDLPQQMTWFNLDDRDKYTFPVPMDKIYKFIEG >gi|224999948|gb|ACJC01000052.1| GENE 9 9271 - 10245 987 324 aa, chain + ## HITS:1 COG:SA1686 KEGG:ns NR:ns ## COG: SA1686 COG1988 # Protein_GI_number: 15927443 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Staphylococcus aureus N315 # 1 324 1 324 325 506 78.0 1e-143 MDTATHIVMGVGLTALATQDPVMAGSFAATATTLIAGSLIPDGDTVLKLKDNATYISHHR GITHSLPFTILWPILITFFIFVIFSHTNPLHVWLWAQLAVFLHVFVDIFNSYGTQALRPI TNKWIQLSVINTFDPIIFIILSIGVLLWILGIHPYIVFFPIILILIGYYIVRFKMQAAIR KQALQKIEQSHTPVKVFVAPTMKFHVWRVAIQTDKHDYVGVSKWKNVVFTDKVKRQSMTP DSILWKVKGNKDIYTFLNFSSIYRWQTTPLDDGTTEIRLMDLRYLNKGRYSFVAIAHLTH ENEIDHSYIGWVFSEDKLQRKLFS >gi|224999948|gb|ACJC01000052.1| GENE 10 10442 - 11257 491 271 aa, chain - ## HITS:1 COG:no KEGG:SERP1408 NR:ns ## KEGG: SERP1408 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: ABC transporters [PATH:ser02010] # 1 268 1 268 276 346 95.0 6e-94 MIDNLIVYIKNLPHLFSFCTQRLKQTWKWFAISLIIGLVIILALEGFFNFNHTTDIVQVR WLFRISSLIIFSIIIQSIYIAYKYYIRDFVVMKSFHISAVTPTIVIAMLGLITILILGIV IIILKPVNFEASILSFLYYLVIIAIFISVTSIMLGLLNYAIKHVKLIFIIVSAISFFMVP ITYIPKTNLNVINHIMMLNPLYYFVNGSSQAIVFGTVSMSNLPYHLYIIILIGIMCVINY ALVRHIAFDKYQSQSNQKSYSKEKKNKEKER >gi|224999948|gb|ACJC01000052.1| GENE 11 11266 - 12783 1223 505 aa, chain - ## HITS:1 COG:SA1688 KEGG:ns NR:ns ## COG: SA1688 COG1134 # Protein_GI_number: 15927445 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 505 1 505 505 660 63.0 0 MGSSIVLKLLKVTHYYRNHSSKKWYRPLGYDAEDINLNNISLHIYQGEALGIIGEPGSSK TLIGRILSGSVKPDKGKVVRTKNLYFGDIDDRKINNLTVSQYVSELVQLFPYEVTEHKVE QIIHWAHLGDHIEEKVSNLSEKSYAQLLLSIARSSKNDIIILNHVLSHLDETFIERASIL STDYIEENKTLVLIDNDIEKISKTSNYITWVSHGQIRKEGSLNQVLPTFREHEKDRNSLK SEMEIENFDYDWKKNRSRIPEMTYNFKRIERYNHAKPPKFLVRFWTLFVSFLMGLVLMTV LFFNNLGMVKLGNINTQASIQNQNKDTYEEKLAYGLALDGSVTLNGSKDLKVPKYSLITI TGENNKRYRVELNQRTYSISKNQVFYFNPAGLYESHTFKKLSPYIKSNYSTYVEYFNSHL HQKHDKVTETLRPDKDKQYVVPITQQPIKMIFGDNDKLSGFVIPMTNKTELKKTFNITKD VWITKNGSGYFIADMKEEKWIYIEL >gi|224999948|gb|ACJC01000052.1| GENE 12 12799 - 13113 456 104 aa, chain - ## HITS:1 COG:no KEGG:SE1557 NR:ns ## KEGG: SE1557 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 104 1 104 104 177 100.0 9e-44 MNKKKMSEMSEQELRHEIQLFKEKMRKAEMNGIMNEYDVYQSKVIIAESYLVDRNKIEPG KIYKLNDGSKQYFKVERLKGVFAWGFRINSSEPEEGLPLALLKF >gi|224999948|gb|ACJC01000052.1| GENE 13 13106 - 13909 788 267 aa, chain - ## HITS:1 COG:SA1690 KEGG:ns NR:ns ## COG: SA1690 COG2137 # Protein_GI_number: 15927447 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 265 1 265 272 307 71.0 2e-83 MPKVTKIEVQKKNKERFNLFLDGEFEMGIDIDTLVKFNLKKDQILEPSDMQNIQEYDHYR RGVNLAIQYLSYKKRTEREVIQYLEKNDIQSNAIQDVIDYCYKEKFIDHEDYAESLKNTM IHTTDKGPEIYRQKLYQLGIEATIIEKYVKAYEQQQPLDDVIKVGKKVMKSKKGPEAKVK QKVTQSLLQKGYKLETIQLVMNEIDFSQDEETLDHLLQRDLEKVYNKNCKKYDSDKSVIK TIEALMRKGYNYDKIKSKLEESGISYE >gi|224999948|gb|ACJC01000052.1| GENE 14 14188 - 14997 815 269 aa, chain - ## HITS:1 COG:SA1691 KEGG:ns NR:ns ## COG: SA1691 COG0744 # Protein_GI_number: 15927448 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Staphylococcus aureus N315 # 1 267 1 267 269 323 74.0 2e-88 MKRSDKYTADYIEQHYESQRPHYNTYYQPIGKPPKKKKSKKIFLKVIITILILLIIFFGV MYFISSRANVDDLKSIENKSDFVATENMPNYVKGAFISMEDERFYKHHGFDIKGTTRALF STISDRDVQGGSTITQQVVKNYYYDNERSFTRKIKELFVARKVEKQYSKNQILSFYMNNI YYGDNQYTVEGAANHYFGVTVDKNNSNMSQISVLQSAILASKVNAPSVYDVNDMSNNYIN RVKTNLEKMKQQNFISESQYQEAMSQLGN >gi|224999948|gb|ACJC01000052.1| GENE 15 15321 - 15839 742 172 aa, chain - ## HITS:1 COG:SA1692 KEGG:ns NR:ns ## COG: SA1692 COG0693 # Protein_GI_number: 15927449 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Staphylococcus aureus N315 # 1 171 1 171 171 287 89.0 6e-78 MTKKVAIILADEFEDIELTSPKEALENAGFETEVIGDTANHEVVGKHGEKVTVDVSIADA KPEDYDALLIPGGFSPDHLRGDEEGRYGTFAKYFTKNDVPTFAICHGPLVLVDTDDLKGR TITGVINVRKDLSNAGANVVDESVVVDNNIVTSRVPDDLDDFNREIVKKLEA Prediction of potential genes in microbial genomes Time: Sun May 29 07:26:28 2011 Seq name: gi|224999947|gb|ACJC01000053.1| Staphylococcus epidermidis W23144 contig00092, whole genome shotgun sequence Length of sequence - 30492 bp Number of predicted genes - 30, with homology - 30 Number of transcription units - 17, operones - 8 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 106 - 267 259 ## SERP1414 hypothetical protein - Prom 352 - 411 5.6 2 2 Tu 1 . + CDS 426 - 1568 1006 ## COG0535 Predicted Fe-S oxidoreductases + Term 1589 - 1646 14.8 - Term 1576 - 1634 12.1 3 3 Op 1 1/1.000 - CDS 1704 - 2234 608 ## COG1607 Acyl-CoA hydrolase - Prom 2254 - 2313 3.7 - Term 2260 - 2296 -0.8 4 3 Op 2 1/1.000 - CDS 2315 - 3556 1283 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) 5 3 Op 3 . - CDS 3558 - 3773 304 ## COG4840 Uncharacterized protein conserved in bacteria - Prom 3862 - 3921 4.5 + Prom 3775 - 3834 8.7 6 4 Op 1 . + CDS 3915 - 4379 336 ## COG0394 Protein-tyrosine-phosphatase 7 4 Op 2 . + CDS 4387 - 4671 467 ## SERP1420 hypothetical protein + Term 4760 - 4809 8.1 + Prom 4988 - 5047 9.1 8 5 Tu 1 . + CDS 5077 - 6255 1186 ## COG1295 Predicted membrane protein + Term 6267 - 6314 9.5 - Term 6250 - 6307 11.2 9 6 Op 1 19/0.000 - CDS 6312 - 6941 654 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 10 6 Op 2 7/0.000 - CDS 6931 - 7977 953 ## COG4585 Signal transduction histidine kinase 11 6 Op 3 . - CDS 7974 - 8675 518 ## COG4758 Predicted membrane protein 12 6 Op 4 . - CDS 8690 - 9004 308 ## SERP1425 hypothetical protein - Prom 9099 - 9158 6.4 - Term 9104 - 9149 8.1 13 7 Tu 1 . - CDS 9234 - 9989 1046 ## COG0024 Methionine aminopeptidase - Prom 10018 - 10077 7.0 + Prom 9977 - 10036 7.8 14 8 Tu 1 . + CDS 10163 - 11149 845 ## COG4129 Predicted membrane protein + Term 11210 - 11247 2.2 - Term 11198 - 11235 5.1 15 9 Tu 1 . - CDS 11301 - 11837 573 ## SERP1428 immunodominant antigen B, putative - Prom 11867 - 11926 8.8 - Term 12153 - 12198 12.6 16 10 Op 1 10/0.000 - CDS 12277 - 13002 832 ## COG3442 Predicted glutamine amidotransferase 17 10 Op 2 . - CDS 13004 - 14317 1340 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 14468 - 14527 8.8 + Prom 14446 - 14505 13.4 18 11 Op 1 . + CDS 14539 - 15036 672 ## COG1528 Ferritin-like protein + Term 15095 - 15145 1.6 + Prom 15109 - 15168 6.1 19 11 Op 2 . + CDS 15229 - 15783 347 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases + Term 15948 - 16008 2.1 20 12 Tu 1 . - CDS 15814 - 16884 1272 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 16919 - 16978 6.2 - Term 16997 - 17049 8.2 21 13 Tu 1 . - CDS 17197 - 17739 158 ## SERP1434 hypothetical protein - Prom 17779 - 17838 9.0 22 14 Op 1 2/0.250 - CDS 17883 - 19301 1306 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 23 14 Op 2 2/0.250 - CDS 19343 - 20293 1096 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 20405 - 20464 6.4 - Term 20450 - 20495 9.1 24 15 Op 1 21/0.000 - CDS 20518 - 21945 1812 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) 25 15 Op 2 31/0.000 - CDS 21958 - 23415 435 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 26 15 Op 3 . - CDS 23417 - 23719 420 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit - Prom 23749 - 23808 3.3 + Prom 24000 - 24059 7.1 27 16 Tu 1 . + CDS 24098 - 25633 1799 ## COG0591 Na+/proline symporter + Term 25753 - 25806 12.3 - Term 25739 - 25794 15.2 28 17 Op 1 4/0.000 - CDS 25960 - 27168 1478 ## COG4851 Protein involved in sex pheromone biosynthesis 29 17 Op 2 5/0.000 - CDS 27188 - 29185 2101 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 30 17 Op 3 . - CDS 29189 - 30490 1233 ## COG0210 Superfamily I DNA and RNA helicases Predicted protein(s) >gi|224999947|gb|ACJC01000053.1| GENE 1 106 - 267 259 53 aa, chain - ## HITS:1 COG:no KEGG:SERP1414 NR:ns ## KEGG: SERP1414 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 53 1 53 53 69 100.0 4e-11 MSEQQTIDQIKTRLNKFIEDIDHVNPDEVRVEDIDEWIGLLDQLEEKVKQVSK >gi|224999947|gb|ACJC01000053.1| GENE 2 426 - 1568 1006 380 aa, chain + ## HITS:1 COG:SA1693_1 KEGG:ns NR:ns ## COG: SA1693_1 COG0535 # Protein_GI_number: 15927451 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Staphylococcus aureus N315 # 6 219 7 220 220 384 85.0 1e-106 MIISNKSPISINNDPWEAYNDILEHNQLTLSNIEFTTTNLCNMRCSHCAVGYTLQTKDPD PLPMDIIYRRLDEIPNLRTLSITGGEPMFSKKSIKNVVKPLLKYAKHRGIYVQMNSNLTL PQDRYLDIAEYIDVMHISHNWGTIQEFTDVGFGAMRKQPPLKAKLKLYEQMLENSSTLSD QGMFVSAETMLNQSTVPYLNKIHNEVVNDMKCSRHEIHPMYPSDFASQLNVLSLKEMKEA IHHLLDIRDENTWMLFGTLPIYPCLNDEYDQHLLQRLRKSKNVTMRNDPDGRSRLNVNVF TGDVIVTDFGDENGTISNIQKDKLTDVFNQWLNTDLAQSLNCHCPEYHCLGPNVLVKNMY YPNTDFKKKEQKMHQYQIFS >gi|224999947|gb|ACJC01000053.1| GENE 3 1704 - 2234 608 176 aa, chain - ## HITS:1 COG:SA1694 KEGG:ns NR:ns ## COG: SA1694 COG1607 # Protein_GI_number: 15927452 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Staphylococcus aureus N315 # 1 174 1 174 176 252 74.0 3e-67 MANTNRKSKKMSDAKCVKTRQVYPQDTNHHHTMFGGTLMANIDEIAAITAMKHAGNPVVT ASTDSVDFLRPITTGDILSYEAMVSYAGTSSMEICVQIVIDDVYKNERHLAALSFLTFVA LDSDGKPTSVPDVEPETSVEKWFHETAPQRVARRKERRKESIDTIEYLSRVRHIEK >gi|224999947|gb|ACJC01000053.1| GENE 4 2315 - 3556 1283 413 aa, chain - ## HITS:1 COG:SA1695 KEGG:ns NR:ns ## COG: SA1695 COG2309 # Protein_GI_number: 15927453 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Staphylococcus aureus N315 # 1 412 1 412 415 651 76.0 0 MTSYHNKLKQYAELLVRVGMNVQPHQPVFIRSSVEALELTHLIVEEAYKAGAEDVRVSYT DPRLKRLKFENESVEHFENQELKQYDIEERLDYVNRGAANLALIAEDPELLSGIDAHKLK AYQTVYSKGFKPYMEASQKNQFPWVVAAFPTRDWAHRVYPELDVESAYIKFIDEVFDIVR VDGQNPIENWEKHAKDLSVHAKRLQEKNYQALHYISEGTDLIVGLPEGHIWEDATSYVNG DGQPFIANIPTEEVFTAPDRNNVNGYVTNKLPLNLNGNIIDGFTLTFKDGVIVDVKAEKG EKLLKDLIATDEGACRLGEVALVPDDSPISNRRTIFYNTLFDENASCHLAIGSAYSFNIK GGTEMTTEEKITNGLNDSNIHEDFMIGSPDLTIYGILQDETKELVFKNGNWAK >gi|224999947|gb|ACJC01000053.1| GENE 5 3558 - 3773 304 71 aa, chain - ## HITS:1 COG:SA1696 KEGG:ns NR:ns ## COG: SA1696 COG4840 # Protein_GI_number: 15927454 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 68 1 68 68 77 58.0 7e-15 MSLSNEEMISNIRQKLNIVNQALLNPEKFKSTPHQDISEIYEFVMSKDSFSPSEVTAIAD HLGQLRQDMED >gi|224999947|gb|ACJC01000053.1| GENE 6 3915 - 4379 336 154 aa, chain + ## HITS:1 COG:SA1697 KEGG:ns NR:ns ## COG: SA1697 COG0394 # Protein_GI_number: 15927455 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 153 1 153 154 275 86.0 3e-74 MIHVAFVCLGNICRSPMAEAIMRQRLQERGISDIKVHSRGTGRWNLGEPPHNGTQKILQK YHIPYDGMVSELFEPDDDFDYIIAMDQSNVDNIKQINPNLQGQLFKLLEFSNMEESDVPD PYYTNNFEGVFEMVQSSCDNLIDYIVKDANLKER >gi|224999947|gb|ACJC01000053.1| GENE 7 4387 - 4671 467 94 aa, chain + ## HITS:1 COG:no KEGG:SERP1420 NR:ns ## KEGG: SERP1420 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 94 1 94 94 158 98.0 7e-38 MENKLVPGILIGAVIGGAAALADKSTRHSLKQSFKDIKEGNRTRKPSKISSIKDEVMYWK DTLEEIRRNNPELERSIKDAKETFVNRKNQRLGK >gi|224999947|gb|ACJC01000053.1| GENE 8 5077 - 6255 1186 392 aa, chain + ## HITS:1 COG:SA1699 KEGG:ns NR:ns ## COG: SA1699 COG1295 # Protein_GI_number: 15927457 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 392 1 391 405 422 65.0 1e-118 MSKKEKTTSKYLNSIEYKEHKKNKKIEVDRTYIEPQEFQSKKPKKKNQVFFVSRLNKPAK YTENSNFFSYLIYRIGKDDAAGLAAQMTYHFVLALFPMLIFLLTLLGQFITIDANQINQK VSQYVPDQETASIVGGIVKDISDTASGGILSVGLILAIWSASNGMSAIINSFNVAYDVED SRNGIVVKLLSILYTLVLGAVFVVAVVLITLGPVINKFLFGPLGIDNQIEWIFNLVRIVI PLIIIFIIFTVLYSVAPNVKTKLRSVIPGAIFTSIIWLLGSFAFGYYISNFSNYSKTYGS LAGIIILFLWLYITSFIIIIGAEINAIIHQRKVIAGHTPEEAAIKHEDNNENHYNENTTY EYYKDNKDVDISNEDDTYNINHQSKEEHHTTD >gi|224999947|gb|ACJC01000053.1| GENE 9 6312 - 6941 654 209 aa, chain - ## HITS:1 COG:SA1700 KEGG:ns NR:ns ## COG: SA1700 COG2197 # Protein_GI_number: 15927458 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 209 1 209 209 337 94.0 6e-93 MAIKILFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKEAITKAHELKPDLILMDLLMDD MDGVEATTEIKKDLPQIKVVMLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTY EGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVK THVSNILSKLEVQDRTQAVIYAFQHNLIQ >gi|224999947|gb|ACJC01000053.1| GENE 10 6931 - 7977 953 348 aa, chain - ## HITS:1 COG:SA1701 KEGG:ns NR:ns ## COG: SA1701 COG4585 # Protein_GI_number: 15927459 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 344 1 344 347 565 92.0 1e-161 MNHYIRAIGSMLILVYSMLIAFLFIDKVFVNIIFFQGMFYTQIFGIPVFLFLNLLIVFLC IIVGSVLAYKINQQNDWIISQIERSIEGQTVGINDQNIELYTETIDIYHTLVPLNQELHR LRMKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKESKLEP PLNQQIPILEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVLHEI QDFEVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNQEDYLLLRIQDNGKGFNVDEK FEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLNKEENSSGD >gi|224999947|gb|ACJC01000053.1| GENE 11 7974 - 8675 518 233 aa, chain - ## HITS:1 COG:SA1702 KEGG:ns NR:ns ## COG: SA1702 COG4758 # Protein_GI_number: 15927460 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 233 1 233 233 315 82.0 4e-86 MTRKYISTEMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYVYFHKVRGLLSF WIGTLLIAFTLLSNKYTIIILFVFLIVVIIRYLVYKFRPLKVIATDEDITSPIFIKQKWF GEQHTPVYVYKWEDVQIQHGIGDIHIDMTKAANIKETNTIVVRHILGKVQVVVPLNYNIN LHATLFYGTAYVNDKSYKIENNHVQIEEKTKDDNYTVNVYVSSFIGDVEVIYR >gi|224999947|gb|ACJC01000053.1| GENE 12 8690 - 9004 308 104 aa, chain - ## HITS:1 COG:no KEGG:SERP1425 NR:ns ## KEGG: SERP1425 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 104 28 131 131 167 100.0 1e-40 MSLDKQIKNIDTYINYLREKRLQLKKLIDTLTLSLENKYIDLVNNQAIYCAEEIHDNDID MIKSQLNDAESYYARIEADINLQSRMKITTEEAFHFIYHMSAVA >gi|224999947|gb|ACJC01000053.1| GENE 13 9234 - 9989 1046 251 aa, chain - ## HITS:1 COG:SA1704 KEGG:ns NR:ns ## COG: SA1704 COG0024 # Protein_GI_number: 15927462 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Staphylococcus aureus N315 # 1 251 1 251 252 435 86.0 1e-122 MIVKTDEELQALKEIGYICAKVRDTMKEATQPGVTTRELDHIAKDLFEEHGAISAPIHDE NFPGQTCISVNEEVAHGIPGKRVIREGDLVNIDVSALKNGYYADTGISFVVGKSDQPLKQ KVCDVATMAFENAMKKVKPGTKLSNIGKAVHATARQNDLTVIKNLTGHGVGQSLHEAPNH VMNYFDPKDKTLLKEGQVIAVEPFISTHATFVTEGKNEWAFETKDKSYVAQIEHTVIVTK DGPLLTTKIDD >gi|224999947|gb|ACJC01000053.1| GENE 14 10163 - 11149 845 328 aa, chain + ## HITS:1 COG:SA1705 KEGG:ns NR:ns ## COG: SA1705 COG4129 # Protein_GI_number: 15927463 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 327 1 328 328 425 64.0 1e-119 MNDKWYRHIIGARTIKTGLATFFTSLFCMLLNLTPIFAILTAIVTIEPTAKASLKKGYKR LPATVIGALFAVVFTYVFGDQSPLSYALSATFTILICTKLNLQVGTTVAVLTSVAMIPGI HEAYVFNFFSRLLTALIGLVTAGLVNFIILPPKYYHQLEEQLALSEKKMYNLFYVRCNEL LLGKFSSEKTSKELSKLNIIAQKAETLMSYQRDELHYHKNEDNWKLLNRLTNRAYNNRLF ISHLSNIIYLPKHTSIAFDANEKIALINISNSINGIIQKGSFTRQKESIATLKSSVKQMD EFDQNQMKSTLIYEILLIYKILDSRYAK >gi|224999947|gb|ACJC01000053.1| GENE 15 11301 - 11837 573 178 aa, chain - ## HITS:1 COG:no KEGG:SERP1428 NR:ns ## KEGG: SERP1428 # Name: not_defined # Def: immunodominant antigen B, putative # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 178 1 178 178 312 96.0 3e-84 MKIFKLTSLTLAALTLAFPFSHVAQAHTYLEKHHQTNETKQSHSFSLEGEAGKNPTFLTQ PQFITSLDNGHLNINGYQIQQDDTNDIEYKKIYDQEIRATSNHTAISVRFSINNQSLSLE SMKDAYPKERLNHIPHTSSDSQYPEDGIYVYHGKMIKLQYKVTQGFVTSVTIGEGVDE >gi|224999947|gb|ACJC01000053.1| GENE 16 12277 - 13002 832 241 aa, chain - ## HITS:1 COG:SA1707 KEGG:ns NR:ns ## COG: SA1707 COG3442 # Protein_GI_number: 15927465 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Staphylococcus aureus N315 # 1 241 1 241 243 411 86.0 1e-115 MNELTVYHFMSDKLNLYSDIGNIMALKQRAKKRNIKINVKEINETEGVTFDDCDIFFIGG GSDREQALATKELSKIKTSLKNAIEDGMPGLTICGGYQFLGHKYITPDGTELEGLGVLDF YTESKKERLTGDIIIESDTFGTIVGFENHGGRTYHPYGTLGRVTYGYGNNDNDRKEGIHY KNLLGSYLHGPILPKNHEITDYLLEKACERKGIQFEPKKIDNTEEEAAKQVLIKRAKENK K >gi|224999947|gb|ACJC01000053.1| GENE 17 13004 - 14317 1340 437 aa, chain - ## HITS:1 COG:SA1708 KEGG:ns NR:ns ## COG: SA1708 COG0769 # Protein_GI_number: 15927466 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Staphylococcus aureus N315 # 1 437 1 437 437 748 84.0 0 MRQWTATHMAKLARKASIAVGKKGTDLPGQIARRVDHNILRKLAKQVDDIVFISGTNGKT TTSNLIGHTLKKNQINIIHNNEGANMAAGITSAFIMQSSKDTNIAIIEIDEGSIPRVLNE ITPSMMVFTNFFRDQMDRFGEIDIMVDNIAKSISNKGIKLLLNADDPFVSRLKIASHSIV YYGMKKFAHEFEQSTMNESKYCPNCGRLLQYDYIHYNQIGHYHCECGFKREVPTYEVSSF EASPFLKMIINQSEFNMKIAGDFNSYNAIAAYTVLRELGLNDDAIRKGFETYTSDNGRMQ YFSKNKKEAMINLAKNPAGMNASLSVGEQIDDKKVYVISLNDNAADGRDISWIYDADFEK LATQDIEAIIVSGTRAEELQLRLKLAEVEVPIKVEKDIYKATALTMKYSSFTVAIPNYTS LTPMLEQLNRSFEGGQS >gi|224999947|gb|ACJC01000053.1| GENE 18 14539 - 15036 672 165 aa, chain + ## HITS:1 COG:SA1709 KEGG:ns NR:ns ## COG: SA1709 COG1528 # Protein_GI_number: 15927467 # Func_class: P Inorganic ion transport and metabolism # Function: Ferritin-like protein # Organism: Staphylococcus aureus N315 # 1 165 1 165 166 220 81.0 1e-57 MLSKELLAALNEQMNQEYFAAHAYMAMAAYCDKESYDGFANFYIEQAKEERFHGKKIYDY INDRGEHAIFDTIKAPKVEFSSILETFKDSLAQERDVTQRFYNLSELARNDKDYATISFL NWFLDEQVEEESTFETHIDYLTRIGDDCNTLYLYEKELAARSFNE >gi|224999947|gb|ACJC01000053.1| GENE 19 15229 - 15783 347 184 aa, chain + ## HITS:1 COG:SA1710 KEGG:ns NR:ns ## COG: SA1710 COG0847 # Protein_GI_number: 15927468 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Staphylococcus aureus N315 # 1 184 1 184 184 290 76.0 1e-78 MAQNAFVALDFETANGKRTSICSVGMVKVIDNQITESFHTLVNPFDYFTETNINVHGIHP EDVQDAPGFKHVYPYMLQFIDQLPVVAHNAAFDMNVLHQSLKSLNIDTPSLTYFCSYQLA KRTINAYRYGLKHLMNHYHLDFHGHHDALNDAKACAMITYRLLKHYDDLQSMLSIYGKNL KDKG >gi|224999947|gb|ACJC01000053.1| GENE 20 15814 - 16884 1272 356 aa, chain - ## HITS:1 COG:SA1711 KEGG:ns NR:ns ## COG: SA1711 COG0389 # Protein_GI_number: 15927469 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 593 84.0 1e-169 MTERRIIHIDMDYFFAQVEMRDNPKLKGKPVIVGGKASHRGVVSTASYEARAYGVHSAMP MTQAHKLCPNGYYVTSRFDAYREVSGQIMEIFRSYTELVEPMSLDEAYLDITHLVRPDLS ASTIANYIRRDIYEVTRLTASAGVSYNKFLAKLASGMNKPNGLTVIDYNNVHEILMQLDI GDFPGVGKASKKKMHQHHIYTGQDLYNKDEFELIRLFGKRGRGLYNKARGIDHNEVKASR VRKSVGTERTFSTDVNDDDVILRKIRELSGKTAERLNKIQKSGKTVTVKIKTYQYETISK QKSLRDPIRTETDIYNIAYTLYNDLKDPEIPIRLIGVTVGSLEQSDFKNLTIYDFI >gi|224999947|gb|ACJC01000053.1| GENE 21 17197 - 17739 158 180 aa, chain - ## HITS:1 COG:no KEGG:SERP1434 NR:ns ## KEGG: SERP1434 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 180 1 180 180 280 98.0 1e-74 MHKIDLSGNKFQIQRFVLLQIVLALFTILFTYKWAYQTTHIIEQNLVINLILGFVGFAVL VILHEFIHRILFIIFSKGEKPSLKYDKNKIIVQFSQTCFHRWQFTIIMIAPLVIISATLL ALIQIYSFSSLIFMFSIHTSYCMIDVFLVALALQSKFKYIQTYGEGLYLYQQKPTQTYYE >gi|224999947|gb|ACJC01000053.1| GENE 22 17883 - 19301 1306 472 aa, chain - ## HITS:1 COG:SA1713 KEGG:ns NR:ns ## COG: SA1713 COG2265 # Protein_GI_number: 15927471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Staphylococcus aureus N315 # 17 466 1 450 453 692 72.0 0 MPHIIFLTFLYVGGKKLETFKKNEVKTGKVIDLTHEGHGVVKVDRYPIFIPNALIDEEIK FKLIKVKKNFAIGKLIEVISESDDRVTPPCIYYAKCGGCQLQHMTYRAQLDMKREQVVNL FHRKGPFENTIIKETIGMDNPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHDIIDMDSCLI QDKQHQEVMNRVKYWLNELNISIYNEKAKTGLIRHLVVRTGYHTDEMMVIFVTNGATFKQ SELLVNKLKKEFPNITSIKQNINNSHSNVIMGRQSMTLYGKDKIEDQLSEVIYHISDLSF YQINSSQTEKLYQQALNYAQLTGKEIVLDTYCGIGTIGLYMAPLAKHVYGVEVVPQAIKD AEDNATKNQLKNTTFECGKAEDVILTWKSQGIKPDVVMVDPPRKGCDETFLTTLLKLNPK RIIYISCNPSTQQRDAQILAEQYELVEITPVDMFPQTTHIETVALFVRKDEE >gi|224999947|gb|ACJC01000053.1| GENE 23 19343 - 20293 1096 316 aa, chain - ## HITS:1 COG:SA1714 KEGG:ns NR:ns ## COG: SA1714 COG1597 # Protein_GI_number: 15927472 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Staphylococcus aureus N315 # 1 310 1 310 315 557 89.0 1e-158 MRKRARIIYNPTSGKELFKRVLPDALIKLEKAGYETSAYATEKIGDATFEAERALENEYD LLIAAGGDGTLNEVVNGIAEQPNRPKLGVIPMGTVNDFGRALHLPNDIMGAIDVIIDGHT TKVDIGKMNNRYFINLAAGGKLTQVSYETPSKLKSIVGPFAYYIKGFEMLPQMKAVDVRI EYDDNIFQGEALLFLLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKANLAELGHIMTLAS RGEHTKHPKVIYAKAKSINISSFTDMQLNVDGEYGGKLPANFLNLEQHIEIFTPKDVFNE ELLENSTIPDITPDKQ >gi|224999947|gb|ACJC01000053.1| GENE 24 20518 - 21945 1812 475 aa, chain - ## HITS:1 COG:SA1715 KEGG:ns NR:ns ## COG: SA1715 COG0064 # Protein_GI_number: 15927473 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Staphylococcus aureus N315 # 1 475 1 475 475 849 93.0 0 MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNRRAVDWAM RASMALNMDIATNSKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITR LHMEEDAGKSTHKDGYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVS DCKMEEGSLRCDANISLRPYGQKEFGTKTELKNLNSFNYVKKGLEYEEKRQEEELLNGGE IGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYVDEDWKARVRQTIPELPDERK AKYVNDLGLPEYDAHVLTLTKEMSDFFEGAIDHGADVKLTSNWLMGGVNEYLNKNQVELK DTQLTPENLAGMIKLIEDGTMSSKIAKKVFPELAENGGDAKQIMEDKGLVQISDEATLLK FVTDALDNNPQSIEDYKNGKGKAMGFLVGQIMKASKGQANPQKVNSLLKQELDNR >gi|224999947|gb|ACJC01000053.1| GENE 25 21958 - 23415 435 485 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 5 477 6 456 468 172 30 3e-42 MSIRFESIEKLTELIKNKEIKPSDVVKDIYAAIEETDPTIKSFLALDKENAIKKAEELDE LQAKDQMDGKLFGIPMGIKDNIITKDVETTCASKMLEGFVPIYESTVMNKLHDENAVLIG KLNMDEFAMGGSTETSYFKKTLNPFDHTAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIR QPASYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVKDNALVLEAISGVDANDSTS APVDDVDFTSDIGKDIKDLKIALPKEYLGEGVSEEVKTSVKEAVETLKSLGAEVDEVSLP NTKYGIPSYYVIASSEASANLARFDGIRYGYHSKEAQSLEELYKMSRSEGFGEEVKRRIF LGTFALSSGYYDAYYKKSQKVRTLIKNDFDKVFESYDVVVGPTAPTTAFNIGEEIDDPLT MYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQLIGKPFDEKTLYRVAYQFETQYNLHD AYENL >gi|224999947|gb|ACJC01000053.1| GENE 26 23417 - 23719 420 100 aa, chain - ## HITS:1 COG:SA1717 KEGG:ns NR:ns ## COG: SA1717 COG0721 # Protein_GI_number: 15927475 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Staphylococcus aureus N315 # 1 100 1 100 100 144 93.0 4e-35 MTKVTREEVEHIANLARLQISSEETEEMTNTLESILDFAKQNDSADTEGIEPTYHVLDLQ NVLRDDKAIEGIPQELALKNAKETEDGQFKVPSIMNGEDA >gi|224999947|gb|ACJC01000053.1| GENE 27 24098 - 25633 1799 511 aa, chain + ## HITS:1 COG:SA1718 KEGG:ns NR:ns ## COG: SA1718 COG0591 # Protein_GI_number: 15927476 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Staphylococcus aureus N315 # 1 511 1 511 512 795 85.0 0 MFTLGTALSNQIDANWQTYVMIIVYFLILLIIGFYGYRQATGNLSEFMLGGRSIGPYITA LSAGASDMSGWMIMGLPGSVYSTGLSAIWITIGLTLGAYINYFVVAPRLRVFTEVAGDAI TLPDFFKNRLDDKKNIIKIISGLIIVVFFTLYTHSGFVSGGKLFESAFGLNYHVGLLIVA IIVIFYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVAMLKLNGWDTFHDVAQMKPTNLDL FRGTTILGIVSLFSWGLGYFGQPHIIVRFMSIKSHKLLPKARRLGISWMAVGLLGAIGVG LTGISFISEKHIKLKDPETLFIVMSQILFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL TEDFYKLIRGSDKASSHQKEFVLIGRLSVLLVAIVAITIAWHPNDTILNLVGNAWAGFGA AFSPLVLYSLYWKDLTRTGAISGMVAGAVVVIVWISWIKPLATINAFFGMYEIIPGFIVS VLITYIVSKLTKKPDDVVIENLNKVKHIVKE >gi|224999947|gb|ACJC01000053.1| GENE 28 25960 - 27168 1478 402 aa, chain - ## HITS:1 COG:SA1719 KEGG:ns NR:ns ## COG: SA1719 COG4851 # Protein_GI_number: 15927477 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Staphylococcus aureus N315 # 1 402 1 399 399 563 79.0 1e-160 MKRTIFLLMSILLLLTACGDGHKQTSSDKEQSEHKDNHNKNQVKQIATDKKVQGDNYRTI LPFKESQARGLLQDNMANGYNGEDFESGLLELSKEIFPTNKYLYQDGQYLDKKTINAYLD PKYTKKEIDKMSEKEKQSKNANENLGLNPSHNGETDEEKIAENSPAYLSNILEQDFYGNS DSKGKNIKGMSIGLAMNSVYYYKKEKDGETYSKDLSDKEIEKQGKQMASEMLSRLRENSD LKDIPIHFAIYKQSSQDSITPGEFIVGTTVEEGKTKINSWDNINEKAALIPSSTAADYDE TLNNNFKQFNDNLQSYFSNFTQAVGKVKFVNKKAKQLTVDLPIDYYGQAETIGITQYVTE QAEKYFDKLDEYEIRIKDGNTPRALISKTKDDKEPQVHIYHN >gi|224999947|gb|ACJC01000053.1| GENE 29 27188 - 29185 2101 665 aa, chain - ## HITS:1 COG:SA1720 KEGG:ns NR:ns ## COG: SA1720 COG0272 # Protein_GI_number: 15927478 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Staphylococcus aureus N315 # 1 663 1 663 667 1096 82.0 0 MQDVKKRVEKLHDLLNQYSYEYYVQDNPSVPDSEYDKLLHELIEIEEKYPEFKSTDSPTV RVGGEAQSSFEKVNHDTPMLSLGNAFNEEDLRKFDQRIRDSIGQVEYMCELKIDGLAVSL KYENGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLNFEVRGEAYMPRRSFIHLNN EKEQNGEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDLTEFNATTQSEALEELD QLGFKTNQERERVSDIEGVLNYIEKWTSKRESLSYDIDGIVIKVNDLSQQEEMGYTQKSP RWAIAYKFPAEEVITKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHER DIRIGDSVVIKKAGDIIPEVVKSILDRRPNESEIYHMPTHCPSCGHELVRIEGEVALRCI NPKCQAQLIEGLIHFVSRQAMNIDGLGTKIIHQLYENQLIKDVADIFYLKEEDLLPLERM GKKKVDNLLLAIEKSKERSLEHLLFGLGIRHLGVKASQVLAERYETMDQLFKVTESELIE IQDIGDKLAQSVVTYLENSDIRSLIEKLSNKNVNMSYKGIKTTEIDGHPDFSGKTIVLTG KLEQMTRNEASEWLKMQGAKVTNSVTKSTDIVIAGADAGSKLAKAEKYGTEIWTEAAFIE KQNGI >gi|224999947|gb|ACJC01000053.1| GENE 30 29189 - 30490 1233 433 aa, chain - ## HITS:1 COG:SA1721 KEGG:ns NR:ns ## COG: SA1721 COG0210 # Protein_GI_number: 15927479 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 1 432 297 730 730 746 88.0 0 KHNSERKPKGLWTANSGGDKIQYYEAMTERDEAEYVVKEIMKHQRGGKKYSEMAILYRTN AQSRVLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRVIANSNDDISLQRIINVPKRG IGPSSVEKIQTYALQNNISMFDALAEVDFIGLSKKVTQECISFYEMIQNLIKEQEFLEIS EIVDEVLQKSGYKDMLDREQSIESRSRLENLDEFMSVPKDYEENTPLEEQSLINFLTDLS LVADIDEADTQNGVTLMTMHSAKGLEFPIVFIMGMEESLFPHIRAIKSEDDHEMEEERRI CYVAITRAEELLYITNATTRMLFGRSQSNMPSRFLKEIPEDLLDSHTGQKRQTISPKSQP KRGFSKRTTSTKKQVSSSDWKVGDKVMHKAWGEGMVSNVNEKNGSVELDIIFKSEGPKRL LAQFAPITKKEDS Prediction of potential genes in microbial genomes Time: Sun May 29 07:26:44 2011 Seq name: gi|224999946|gb|ACJC01000054.1| Staphylococcus epidermidis W23144 contig00093, whole genome shotgun sequence Length of sequence - 7321 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 1/1.000 - CDS 3 - 162 106 ## COG4496 Uncharacterized protein conserved in bacteria - Prom 189 - 248 4.1 2 2 Tu 1 . - CDS 287 - 1582 1595 ## COG0015 Adenylosuccinate lyase - Prom 1723 - 1782 6.8 - Term 1928 - 1966 4.1 3 3 Op 1 . - CDS 1993 - 2172 225 ## SE1594 hypothetical protein 4 3 Op 2 1/1.000 - CDS 2156 - 2782 793 ## COG4843 Uncharacterized protein conserved in bacteria 5 3 Op 3 5/0.000 - CDS 2857 - 3684 947 ## COG0171 NAD synthase 6 3 Op 4 . - CDS 3677 - 5119 1244 ## COG1488 Nicotinic acid phosphoribosyltransferase - Prom 5175 - 5234 6.7 + Prom 5196 - 5255 6.0 7 4 Op 1 1/1.000 + CDS 5338 - 6405 837 ## COG4362 Nitric oxide synthase, oxygenase domain 8 4 Op 2 . + CDS 6424 - 7227 691 ## COG0077 Prephenate dehydratase Predicted protein(s) >gi|224999946|gb|ACJC01000054.1| GENE 1 3 - 162 106 53 aa, chain - ## HITS:1 COG:SA1723 KEGG:ns NR:ns ## COG: SA1723 COG4496 # Protein_GI_number: 15927481 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 53 1 53 100 90 94.0 5e-19 MQIEKLRGQSLDELFDAILALENREECYQFFDDLCTVNEIQSLSQRLQVAKMI >gi|224999946|gb|ACJC01000054.1| GENE 2 287 - 1582 1595 431 aa, chain - ## HITS:1 COG:SA1724 KEGG:ns NR:ns ## COG: SA1724 COG0015 # Protein_GI_number: 15927482 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Staphylococcus aureus N315 # 1 431 1 431 431 784 91.0 0 MIERYSRDEMSSIWTDQNRYEAWLEVEILACEAWSELGYIPKEDVKKIRENAKVNVERAK EIEQETRHDVVAFTRQVSETLGDERKWVHYGLTSTDVVDTALSYVIKQANEILEKDLERF IDVLAAKAKKYQYTLMMGRTHGVHAEPTTFGVKMALWYTEMKRNLKRFKEVRKEIEVGKM SGAVGTFANIPPEIEAYVCEHLGIDTAAVSTQTLQRDRHAYYIATLALIATSMEKFAVEI RNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSENITGISRVIRGYITTAYENIPLWHE RDISHSSAERIMLPDVTIALDYALNRFTNIVDRLTVYEDNMRNNIDKTYGLIFSQRVLLA LINKGMVREEAYDKVQPKAMESWKTKTPFRELIEQDSSITDVLSTEELDDCFDPKHHLNQ VDTIFARAGLS >gi|224999946|gb|ACJC01000054.1| GENE 3 1993 - 2172 225 59 aa, chain - ## HITS:1 COG:no KEGG:SE1594 NR:ns ## KEGG: SE1594 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 59 5 63 63 98 98.0 8e-20 MSKKFRVEDQETIADCLDRMKKEGFMPIRRIEKPVYKENKDGSIEILKQDIIFVGALIQ >gi|224999946|gb|ACJC01000054.1| GENE 4 2156 - 2782 793 208 aa, chain - ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 196 1 196 200 348 87.0 3e-96 MSAIAQNPWLMVLAIFIINVCYVTFLTMRTILTLKGYRYVAAVVSFMEVLVYVVGLGLVM SSLDQIQNIFAYALGFSVGIIVGMKIEEKLALGYTVVNVTSSEYELDLPNELRNLGYGVT HYEAFGRDGSRMVMQILTPRKYELKLMNTVKNLDPKAFIIAYEPRNIHGGFWVKGVRKRK LKDYEPEQLEVVVDHEEIVGGSSNEQKV >gi|224999946|gb|ACJC01000054.1| GENE 5 2857 - 3684 947 275 aa, chain - ## HITS:1 COG:SA1728 KEGG:ns NR:ns ## COG: SA1728 COG0171 # Protein_GI_number: 15927486 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Staphylococcus aureus N315 # 1 273 1 273 273 429 80.0 1e-120 MSKLQDVVVNEMKVKKQIDSVKEIQEIKQFIKAYVKSHSFIQTLVLGISGGQDSTLTGKL AQLAVNELKEEGRNCKFIAVKLPYGVQQDANEVEDALEFINPDITYTVNIKPAVDQSVQS LSEAGIKLTDFQKGNEKARERMKVQFSIASNTQGIVLGTDHSAENITGFYTKYGDGAADI APIFGLNKRQGKQLLAYLGAPKHLYEKVPTADLEDDKPQLPDEEALGVSYHDIDDYLEGK EIPATARETIEKHYVRNAHKRELAYTRYSWPKNNK >gi|224999946|gb|ACJC01000054.1| GENE 6 3677 - 5119 1244 480 aa, chain - ## HITS:1 COG:SA1729 KEGG:ns NR:ns ## COG: SA1729 COG1488 # Protein_GI_number: 15927487 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 480 10 489 489 855 85.0 0 MLHNDLYQINMAESYWNDGIHERIAVFDLYFRKMPFNSGYAVFNGLKRVVNFIENFGFTN EDITYLKSIGYKEDFLNYLKDLKFTGNIKSMQEGEICFGNEPLLRVEAPLIQAQLIETIL LNIINFQTLIATKASRIRQIATHDTLMEFGTRRAQEIDAALWGARAAFIGGFDSTSNVRA GKLFNIPVSGTHAHALVQTYGDEYIAFKKYAERHKNCVFLVDTFHTLKSGVPTAIKVAKE LGDTINFIGIRLDSGDIAYLSKEARRMLDEAGFTEAKIIASNDLDEQTITSLKAQGAKVD AWGVGTKLITGYDQPALGAVYKLVSIETDDGTMSDRIKLSNNAEKVTTPGKKNVYRIINN KTGKAEGDYITLEGENPNDESPLKMFHPVHTYKMKFIKSFKAVNLHQSIFENGKLVYHLP DEFEAQDYLKNNLNILWEENKRYLNPQDYPVDLSTKCWENKHKRIFEVAEHVKEMEDENE >gi|224999946|gb|ACJC01000054.1| GENE 7 5338 - 6405 837 355 aa, chain + ## HITS:1 COG:SA1730 KEGG:ns NR:ns ## COG: SA1730 COG4362 # Protein_GI_number: 15927488 # Func_class: P Inorganic ion transport and metabolism; E Amino acid transport and metabolism # Function: Nitric oxide synthase, oxygenase domain # Organism: Staphylococcus aureus N315 # 1 355 1 357 358 552 75.0 1e-157 MLIDKAKSFIQTMYSELKYNANEIENRMKEIEQEINLTGSYTHTYEELSYGAKMAWRNSN RCIGRLFWDSLNVKDARDVCDEKEFIKFIHTHIKEATNGGKIKPYITIFSPEDTPKIYNN QLIRYAGYENAGDPSEKEVTRLAEHLGWKGKGSNFDILPLIYQLPNDTIKIHELPHDIVK EVSIHHENYPKLSKLGLKWYAVPIISNMDLKIGGITYPTAPFNGWYMVTEIAVRNFTDTY RYNLLEKVAEAFEFDTLKNNSFNKDRALVELNHAVYHSFKADGVSIVDHLTAAKQFEMFE RNEHQQNRDVTGKWSWLAPPLSPTLTSNYHHGYDNTMHHTNFFYKKEEPMKCPFH >gi|224999946|gb|ACJC01000054.1| GENE 8 6424 - 7227 691 267 aa, chain + ## HITS:1 COG:SA1731 KEGG:ns NR:ns ## COG: SA1731 COG0077 # Protein_GI_number: 15927489 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Staphylococcus aureus N315 # 1 264 1 264 264 375 69.0 1e-104 MHLYYLGPKGTFSYLAAKQFESHEQYDFIPLSNLHEVIQSVSKDKQAVGIVPIENSIEGT INIVADSLAHHDVYAHGEIQLDIDFSLYGHHSNSLDDIHKVYSIAPAISQTINYIHRQQF DYDYVDSTIQSLNMIKDGIGAIAPLGSGETYGYHTLDQHIQDYPHNVTRFLVVKNHTHFI EHPNTTIFLITPKYDKPGLLASVLNTFTLFNINLSWIESRPLKTQLGMYHFYVQADTAIN NDVNKIVSILETLDFQVKIIGAFNKKN Prediction of potential genes in microbial genomes Time: Sun May 29 07:26:50 2011 Seq name: gi|224999945|gb|ACJC01000055.1| Staphylococcus epidermidis W23144 contig00094, whole genome shotgun sequence Length of sequence - 18253 bp Number of predicted genes - 19, with homology - 19 Number of transcription units - 12, operones - 3 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 445 - 1542 929 ## COG5434 Endopolygalacturonase - Prom 1615 - 1674 11.2 + Prom 1584 - 1643 15.4 2 2 Op 1 1/0.500 + CDS 1737 - 2291 541 ## COG1335 Amidases related to nicotinamidase 3 2 Op 2 1/0.500 + CDS 2346 - 3275 1265 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase + Term 3350 - 3400 8.2 + Prom 3425 - 3484 7.3 4 3 Tu 1 . + CDS 3574 - 4953 1192 ## COG1012 NAD-dependent aldehyde dehydrogenases 5 4 Tu 1 . - CDS 5064 - 6092 971 ## COG2706 3-carboxymuconate cyclase - Prom 6122 - 6181 10.2 + Prom 6246 - 6305 8.1 6 5 Tu 1 . + CDS 6328 - 6726 466 ## SAOUHSC_02144 hypothetical protein + Term 6889 - 6933 1.6 - Term 6871 - 6927 14.1 7 6 Tu 1 . - CDS 6940 - 7110 292 ## SLGD_01005 hypothetical protein - Prom 7200 - 7259 8.7 + Prom 7181 - 7240 9.3 8 7 Tu 1 . + CDS 7490 - 8530 708 ## COG4927 Predicted choloylglycine hydrolase + Term 8538 - 8584 1.1 - Term 8526 - 8570 2.4 9 8 Op 1 . - CDS 8584 - 9420 512 ## SERP1470 hypothetical protein 10 8 Op 2 . - CDS 9417 - 9974 507 ## COG4709 Predicted membrane protein 11 8 Op 3 . - CDS 10028 - 10573 410 ## SERP1472 hypothetical protein - Prom 10645 - 10704 8.3 - Term 11296 - 11354 7.4 12 9 Op 1 . - CDS 11374 - 12105 682 ## SERP1474 hypothetical protein 13 9 Op 2 . - CDS 12105 - 12977 985 ## COG1131 ABC-type multidrug transport system, ATPase component 14 9 Op 3 . - CDS 12998 - 13657 329 ## SERP1476 hypothetical protein 15 9 Op 4 8/0.000 - CDS 13638 - 14552 891 ## COG1131 ABC-type multidrug transport system, ATPase component 16 9 Op 5 . - CDS 14552 - 14929 349 ## COG1725 Predicted transcriptional regulators - Prom 14962 - 15021 7.8 - Term 15047 - 15098 9.2 17 10 Tu 1 . - CDS 15247 - 15417 177 ## SERP1479 hypothetical protein - Prom 15444 - 15503 8.9 + Prom 15803 - 15862 8.6 18 11 Tu 1 . + CDS 15891 - 17180 1415 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 17185 - 17227 9.8 - Term 17299 - 17338 5.1 19 12 Tu 1 . - CDS 17348 - 18226 704 ## SERP1482 cell wall surface anchor family protein Predicted protein(s) >gi|224999945|gb|ACJC01000055.1| GENE 1 445 - 1542 929 365 aa, chain - ## HITS:1 COG:SP1833 KEGG:ns NR:ns ## COG: SP1833 COG5434 # Protein_GI_number: 15901662 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Endopolygalacturonase # Organism: Streptococcus pneumoniae TIGR4 # 3 258 141 419 708 69 28.0 8e-12 MFINAKDFGLKGKSKYKDTRAIQKALNYAKKGRHTVYIPKGTYYIRKALVIYDSTTLLLD EGAILLRQGKDALLKNGRRLKLYHGYNGNSHIYIKGGTFDMNGGEYPYNNTAMCMGHAED IQILGVTFKNIVGGHALDACGINGLHISECDFKGFLDIDGDRSFSEAVQLDIQVPGAFPK FGTTDGTITKNVVIEKCYFGRSDHPKMKAWNRAIGSHASRYNCYYENIHINQNIFDNLNE YALTPLKSKDTFITKNKFINCNGGIRFLGVKDGKNAADPITGQVMETQAGENFNVIGNTF IGKMKRDAIHIRSYHNVRHQHVFIAANQFEDASQSIHLENINGLTLNQEQTKIKIKSIDV KKISN >gi|224999945|gb|ACJC01000055.1| GENE 2 1737 - 2291 541 184 aa, chain + ## HITS:1 COG:SA1734 KEGG:ns NR:ns ## COG: SA1734 COG1335 # Protein_GI_number: 15927492 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Staphylococcus aureus N315 # 1 183 1 183 186 278 71.0 3e-75 MSNKALIIVDYSFDFIDDNGKLTCGKPGQEIETFITQRIKNYHDNQQEIFFLMDLHYEND QFHPESKLFPNHNIHQTPGRELYGEVGRLYNSIKDQMNVHYLDKTRYDSFYGTPLDSLLR ERQINDIEIVGVCTDICILHTAVSAYNLGYNITIPIRGVASFNQDGHQWALSHFKNSLGA KVED >gi|224999945|gb|ACJC01000055.1| GENE 3 2346 - 3275 1265 309 aa, chain + ## HITS:1 COG:SA1735 KEGG:ns NR:ns ## COG: SA1735 COG1227 # Protein_GI_number: 15927493 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Staphylococcus aureus N315 # 1 309 1 309 309 482 81.0 1e-136 MTKTFIFGHKNPDTDAISSALIMADFEQQTGNTEAKAYRLGEISAETQFALDHFNVEAPE LLNEDLKGQDVILVDHNEFQQSADTISNATIKHVIDHHRISNFETAGPLYYRAEPVGCSA TILYKMYKERGFEIKPEIAGLMISAIISDSLLFKSPTCTKEDVDAAQALKDTANVDLEAY GLEMLKAGASTTDKSAETLVNMDAKSFNMGDYVTRIAQVNTVDIDEVLDRKDEFEKVMLE MSANKKYDLFVLVVTDIINSDSKILVVGAEKDKVGEAFKVQLDDGMAFLSGVVSRKKQVV PQITEVLTQ >gi|224999945|gb|ACJC01000055.1| GENE 4 3574 - 4953 1192 459 aa, chain + ## HITS:1 COG:SA1736 KEGG:ns NR:ns ## COG: SA1736 COG1012 # Protein_GI_number: 15927494 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 459 1 459 459 690 74.0 0 MTIIRDKFNNSKAFFNTHKTKNLKFRKQQLKLLSKNIKNHENKLLDALYKDLGKSKVEAY ATEIGMLLKSIKLMRKELKNWSKTKQTDTPLYLFPTKSYIKKEPYGTVLIIGPFNYPVQL VFEPLIGAIAAGNTAIVKPSELTPHVAIVIRDIIEDTFDETYVSVVEGGIEETQTLLSLP FDYIFFTGSEKVGKIVYEAAARKLIPVTLELGGKSPVIVDDTANIKVASERISFGKFTNA GQTCVAPDYILVQRKVKNDLIKALKKTITEFYGENIEKSPDFGRIVNQKHFNRLNDLLQI HKDNVVFGGNSSKEDLYIEPTLLDNITNDNKIMKEEIFGPILPIITYDNFDEVLEIIQSK SKPLSLYLFSEDENMTHRVLEELSFGGGAINDTLMHLANPNLPFGGIGSSGIGQYHGKYS FDTFSHMKSYTFKSTRLESSLFFPPYKGKFKYIKTFFKN >gi|224999945|gb|ACJC01000055.1| GENE 5 5064 - 6092 971 342 aa, chain - ## HITS:1 COG:SA1737 KEGG:ns NR:ns ## COG: SA1737 COG2706 # Protein_GI_number: 15927495 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Staphylococcus aureus N315 # 1 342 1 342 342 432 61.0 1e-121 MTLGYIGSYTKKNGKGIYRFKLNDETGVIEALETGYEIEASTYLTRKESFLYAITKEGEE CGVASFNIKEDGQLELINKCLASKQGTGCYIQVSSNGKYLFEAVYGAGLARIYKLNEITG AIEKLIEELAHEFPTGSHERQDSSHVHFLNETPDHKYVVATDLGTDRVVTYKFGEDGLNQ YAVSQFNNSDGPRHIAFSKDGRHAYIVHELSNEVSVTEYQDGKFIELERHSTIPRDFDGE SKLAAVRLSHDGKHLYISNRGHDSIAMFEVLKDGRSLRSIEIQPSYDAFPRDFNITESDN YLICAHQEGESKVSIFERDNITGKLSLKDKKAIANEGVCVLL >gi|224999945|gb|ACJC01000055.1| GENE 6 6328 - 6726 466 132 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_02144 NR:ns ## KEGG: SAOUHSC_02144 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 7 132 7 132 133 167 61.0 1e-40 MKDIFNEMDYRNIPRDMLDKNIPTGRGMVKWAPFATLPEQFETIYQYMIDQNKVSRPVLS DDQLSQLNIHLHEALQQSRPVNIKYYEEGYINFIELIIHRIDSMNYEIEGTAPHSRERHK VSFLDIIDISFI >gi|224999945|gb|ACJC01000055.1| GENE 7 6940 - 7110 292 56 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01005 NR:ns ## KEGG: SLGD_01005 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 56 1 56 57 81 87.0 8e-15 MWNFIKGLFKFVFSLLAITTVVVGIGVVAFAYIFKKDFEDIERKTKEIVSDIENNN >gi|224999945|gb|ACJC01000055.1| GENE 8 7490 - 8530 708 346 aa, chain + ## HITS:1 COG:SA1739 KEGG:ns NR:ns ## COG: SA1739 COG4927 # Protein_GI_number: 15927499 # Func_class: R General function prediction only # Function: Predicted choloylglycine hydrolase # Organism: Staphylococcus aureus N315 # 1 344 1 344 346 558 74.0 1e-159 MQKVRSDIMTHRGSHYDLGVKTALWLQTTPLLKNRNKEWRKRIPRFDIDVKETYDIFQVY SPQIWEEIIGMQDVLNLPTKQMILNFGHYRFTDLKDSGCTVYKGSDFLVRNYDYHPATYD GRYLLFQPNDGGLSQIGPTSRVTGRMDGMNEYGLVMAYNFMHRKKPENGFVCYMVGRLIL ENCKNVTEAIKFLKEVPHRSSFSYILMDRHSNYAIVEVTPRSIDVRYEHICTNHFELLTH ENRNYTRESKERLNRVINKTTPSTNKDIAFKLFNDPQYEIYSKLFKSWSGTIHTSLYEPN SLIAWMALGQNSHPTSINFSNWLKGEKLNINYFEGEIDTPLTFATY >gi|224999945|gb|ACJC01000055.1| GENE 9 8584 - 9420 512 278 aa, chain - ## HITS:1 COG:no KEGG:SERP1470 NR:ns ## KEGG: SERP1470 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 278 1 278 278 476 97.0 1e-133 MKKLFISGLIIFIIFFASGTMTWFTIDKNKYDNRHYNKTINSKIEHLSISTVTTNVNVIS GKKLAVYFTGDNKINVTKNNKRLSIKEKRAVDRGYGLNFNPFHSNNRKLTIVVPEKDLKS LNIQSLLGEIDLNQVNLKHVSLETDRIIQLKRSELNQLNIESSKANFYITDCLIREGRMK LDKGLTHVKNSTLSDTVFLVNRGDISMTDMKSSNDIKASTQKGNINYHFGEKPKNTLLKL HPGHGNKEIKNRYFDKGKVGNSDNILEFYTVDGDIIIE >gi|224999945|gb|ACJC01000055.1| GENE 10 9417 - 9974 507 185 aa, chain - ## HITS:1 COG:SA1741 KEGG:ns NR:ns ## COG: SA1741 COG4709 # Protein_GI_number: 15927501 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 185 1 185 185 188 58.0 4e-48 MDKITFLNELELALDDLPREEKDSIMHKYENLFYEEELKGISESQIIKKLNDPYHISKEV KARSAIHYASYKPTLANIVRAILASLSLGILSLFIILIPVVIIALLILLCFLISICFIFA PFVLLFYSVLHGFENAISNVFFSISFTGLGIMFIVITLKIGEIIHKLILKYLLWYIKTVK GSVKE >gi|224999945|gb|ACJC01000055.1| GENE 11 10028 - 10573 410 181 aa, chain - ## HITS:1 COG:no KEGG:SERP1472 NR:ns ## KEGG: SERP1472 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 181 1 181 181 308 99.0 7e-83 MKLHCAYAILIRTRVKVVTQVRIQSRWLIFAIFLTGAISLLIGLTYYKSIKSVDLSGYSV NQISLNHGFNQKGFVVNKKIKLDRYTFYNDKNHKDFTVKVKNKTHKVKGMVLVKDDKVET NFGVKMGDPIDKVINKLGENYKINKVGKNYHSMTYVDRFNKLKLNILYKDNIVKRIEFFS K >gi|224999945|gb|ACJC01000055.1| GENE 12 11374 - 12105 682 243 aa, chain - ## HITS:1 COG:no KEGG:SERP1474 NR:ns ## KEGG: SERP1474 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 243 1 243 243 338 98.0 1e-91 MKSLQLVKYDLISILKSPYTYLAFILVIGMTVFQASMMANYSSAHKVNIDMVFNLANWLF LFAGLLFIIKTITRDYSQGTIQLFMNRITSRMGYIITKTVSIVLISFLFTIIHYLVIIII QSTTKSEKIDGDRFLNNIWFYLIFFLFFGLFLLLITLIVEKPAVIFTLGIFLILIVPFIQ PFIPMIPNIGDDIQDSFKYIPFTYLTEKMTGEIKFSHWQWFISIASIVVLFIANMLYASK RDI >gi|224999945|gb|ACJC01000055.1| GENE 13 12105 - 12977 985 290 aa, chain - ## HITS:1 COG:SA1745 KEGG:ns NR:ns ## COG: SA1745 COG1131 # Protein_GI_number: 15927505 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 290 1 290 290 414 74.0 1e-115 MKLQHITKKYGQNTVLDDIDFDFGESQIVGLIGKNGVGKTTLMKVMNNNIINYQGKVDMP KSENVGYLIEHPKLYGNKTGLFNLKLFAQVLGDGFDKEYANHIIEAFGMKPYIKKKVNKY SMGMKQKLSIAVSLMNKPKYLILDEPTNGMDPDGSIDVLKTIQSLVQQLEMKILISSHKL EDIELICDRAVFLRDGKFVQDVDMKDGGPEDSTILTLQKDDFNKALDYLSENFKVQQSQK ESGEIIIKAQNDYRELLKSLSQLDIYPKYIETRKSSLRDTYFNINQRGDK >gi|224999945|gb|ACJC01000055.1| GENE 14 12998 - 13657 329 219 aa, chain - ## HITS:1 COG:no KEGG:SERP1476 NR:ns ## KEGG: SERP1476 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 218 1 218 219 337 97.0 1e-91 MKQLMIRNLKLRSWTLILYALLLLFFPIYHLLNKDTPLYSIISGPIGLILTMICLIDIGH LFRVNRRLGGSSSYYFFYSLPVSKKDLLNANYMTCILLTFIGALIISLYGYNTSTIKTDS IYFSTTFSFIVGNFFSIPIAFSKSTERKDRDIPYLAYIVGIMVVLPFTLSVVFILINYLT HNDSHIPMIYSYFLNYGLLVISSIFLVINYLIQIKKIKN >gi|224999945|gb|ACJC01000055.1| GENE 15 13638 - 14552 891 304 aa, chain - ## HITS:1 COG:SA1747 KEGG:ns NR:ns ## COG: SA1747 COG1131 # Protein_GI_number: 15927507 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 292 1 292 298 380 66.0 1e-105 MNAIELKDVNYQSNAFQLQDVSFNVPKGYVTGFIGGNGAGKTTIIRLIMDLIQSESGTIT VFEKDIKIHPREIKNKIGFVYSEIYFNQKWTVKKLENIIAPFYDRWDHEIFIKYLNFFQL PYKNKIKTFSTGMKMKLSLAIAFSHHAELFILDEPTSGLDPLIRNELLEIIQQELIDENK TVFFSTHIISDLEKIADYIVFLSEGEIIFNESRDKLSQKYKIVSGSNEDLDEELNELLIY KESKQTGYIGLTEYYQTFNELFGSGVEIKDASIEQLMIYLEKSKQERNTNSKHKVRFNYE AIND >gi|224999945|gb|ACJC01000055.1| GENE 16 14552 - 14929 349 125 aa, chain - ## HITS:1 COG:SA1748 KEGG:ns NR:ns ## COG: SA1748 COG1725 # Protein_GI_number: 15927508 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 124 1 124 126 172 80.0 2e-43 MKIILKNNSESPIYEQIKQQIKENVLKGYVSPGEHLPSMRELAKDLKVSLITTKRAYEDL EKDGFVTTIRGKGTFVKEQDNSILKEKQFFVIENLAHSMSKEAKTIGMPLEELIEILTMI YEEDD >gi|224999945|gb|ACJC01000055.1| GENE 17 15247 - 15417 177 56 aa, chain - ## HITS:1 COG:no KEGG:SERP1479 NR:ns ## KEGG: SERP1479 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 56 1 56 56 97 98.0 1e-19 MKHLTKIFVGLAIVLFIVGYYLQATDHDSQGVKLLLAAIMFMICAFINRHNERKKK >gi|224999945|gb|ACJC01000055.1| GENE 18 15891 - 17180 1415 429 aa, chain + ## HITS:1 COG:SA1749 KEGG:ns NR:ns ## COG: SA1749 COG0436 # Protein_GI_number: 15927510 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Staphylococcus aureus N315 # 2 429 1 428 428 655 74.0 0 MMNPLAQKLNDEIKQSSPEVLDMMSQLGKEMFYPKGILSQSAEAKRTTYNATIGMATKKE GKMYADSLNQMFNDLTPDEIFPYAPPQGVEELRDLWQKKMLKENPDLKSKSISRPIVTNA LTHGLSLVADLFVDTEDTILLPTHNWGNYKLVFSTRHGAHIDTYSIFDDSGHFTTSELVK TLKEYKKDKVIMILNYPNNPTGYTPNKEEVNTIVDAIEELANKGTKVVTVVDDAYYGLFY EEVYQQSIFTALTQVKSSNLLPVRLDGATKEFFSWGFRVGFMTFGINHETLKNALEAKVK GLIRSNISSSPLPSQSAIKHVLKHHEQFDKEINQNINILKERYEVTKQVVYDNKYAKYWQ AYDFNSGYFMSLKLNQVDPEELRKHLINNYSIGIIALNSTDIRIAFSCVEKEDIPYVFES IANAIDDIK >gi|224999945|gb|ACJC01000055.1| GENE 19 17348 - 18226 704 292 aa, chain - ## HITS:1 COG:no KEGG:SERP1482 NR:ns ## KEGG: SERP1482 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 292 1682 1973 1973 476 90.0 1e-133 MPIKEITPLAPLLETNFKKATVSILPQSNATKLDFKYRDKKGDSKVIIVKRFKDIWKANQ QISGVSINPEFGQVVINYQAVYPESDILAAQYVGNSDASEWAKVKMPKKEIAPHSPSLTY DNIKDTILITPNSNATEMELSYVDKNNKSLKVKALKINNRWKFDSSISNISINPNTGKII LQPQFLLTNSKIIVSAKKGNSDASISVSLRVPVVKKIELEPISNVPVPVSLNKKNIQFDD CSGVNNSLNKQISKTQLPNTGYSDKTSKWNILSVLLLGFGFLSYSRKRKEKQ Prediction of potential genes in microbial genomes Time: Sun May 29 07:27:16 2011 Seq name: gi|224999944|gb|ACJC01000056.1| Staphylococcus epidermidis W23144 contig00095, whole genome shotgun sequence Length of sequence - 6232 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 68 - 127 3.8 1 1 Op 1 . + CDS 157 - 3231 1977 ## COG0060 Isoleucyl-tRNA synthetase 2 1 Op 2 . + CDS 3301 - 4188 435 ## COG3001 Fructosamine-3-kinase + Prom 4266 - 4325 6.5 3 1 Op 3 . + CDS 4391 - 5362 366 ## COG0477 Permeases of the major facilitator superfamily + Term 5382 - 5439 18.0 Predicted protein(s) >gi|224999944|gb|ACJC01000056.1| GENE 1 157 - 3231 1977 1024 aa, chain + ## HITS:1 COG:CAC3038 KEGG:ns NR:ns ## COG: CAC3038 COG0060 # Protein_GI_number: 15896289 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Clostridium acetobutylicum # 2 999 8 1009 1035 940 45.0 0 MTKKYLNTQNEISAFWNTQKIFKKSIDNRKGQESFVFYDGPPTANGLPHAGHVLGRVIKD LVARLKTMQGFYVERKAGWDTHGLPVELEVEKKIGIKGKQDIEKYGIENFINECKKSVFN YEKEWRDFSKDLGYWVDMDSPYITLENNYIESVWNILSTFHKKGLLYKGHKVTPYCTHDQ TALSSHEVAQGYKNVKDLSAVVKFQLTNSKDTYFLSWTTTPWTLPANVALAINKDLNYSK IRVENEYYILATDLINSIITEKYEIIDTFSGSNLINLKYIPPFESDGLVNAYYVVDGEFV TNSEGTGIVHIAPAHGEDDYQLVLERDLDFLNVITREGVYNDRFPELVGNKAKNSDIEII KLLSKKQLLYKKQKYEHNYPHCWRCGNPLIYYAMEGWFIKTTNFKNEIINNNNNIEWFPS HIKEGRMGNFLENMVDWNIGRNRYWGTPLNVWICNDCNHEYAPSSIKDLQNNSINKIDED IELHRPYVDNITLSCPKCNGKMSRVEEVIDVWFDSGSMPFAQHHYPFDNQKIFNQHFPAD FIAEGVDQTRGWFYSLLVISTILKGKSSYKRALSLGHILDSNGKKMSKSKGNVINPTELI NKYGADSLRWALISDSAPWNNKRFSENIVAQTKSKFIDTLDNIYKFYNMYNKIDHYNPNN EITKSRNTLDNWALSRLNTLIKESNIYVNNYDFTSAARLINEYTNTISNWYIRRSRGRFW EQGISNDKKDAYNTLYEILTTLSRLVAPFVPFISEKIHYNLTGKSVHLQDYPQYKESFIN QALEDEMHTVIKIVELSRQARKNADLKIKQPLSKMVIKPNSQLNLSFLPNYYSIIKDELN IKNIELTDNINDYITYELKLNFSSVGPKLGNKTKNIQTLIDSLSEYDKKSLIESNNFKSL SSDAELTKDDFIIKTLPKDSYQLSEDNDCVILLDKNLSPELIREGHARELIRLIQQLRKK KNLPINQRIDIYIGVTGELLESIKTNKNMFKENLLIKNIHLNVIDEYENTIHFNNKEIKI SLLY >gi|224999944|gb|ACJC01000056.1| GENE 2 3301 - 4188 435 295 aa, chain + ## HITS:1 COG:SA2374 KEGG:ns NR:ns ## COG: SA2374 COG3001 # Protein_GI_number: 15928167 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Staphylococcus aureus N315 # 9 285 9 283 288 228 40.0 9e-60 MYNFDYSKLPIKNIQKIFPIAGGYVNLSFSVDASNKKYFLKLQPNTKSNFFDYELSSLKE LTDKNIPVPQIINKGELDNNSFLLLEFIENGHAYPESYRKLGKIVANMHKNINSLNLFGF SHNFNGGTIEFTNKWTSSWGDLFIKSRMDKLCSEIYKKRLFSISDLLLYEDIRKIMLKSL YYHQSSPSLLHGDLWKGNILFQKNGDPILCDPVCLYGDREFDIGYTLALEKFPLDFYQEY NNIYPLCVGYEKRIEFYKLYVFMIHLFAIGTDFYDKVKDTMYNILNNYGVDFIKG >gi|224999944|gb|ACJC01000056.1| GENE 3 4391 - 5362 366 323 aa, chain + ## HITS:1 COG:BS_yqjV KEGG:ns NR:ns ## COG: BS_yqjV COG0477 # Protein_GI_number: 16079430 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 7 308 74 381 410 124 27.0 2e-28 MLSTVNKKKIILCSIFTAFISFVIFPYIHSYYGFLFFTIINTIASSLLSPTYKTLLTLYS ETSRKRLVFNIRYYLINIAAALGPFISIQIQEVSSLKNVCIFISFIYFINFIFFLFSSIE EKRSENPKLNYLTSFGIIKRNKAYVLLLLGSIFFVFGYSQILSSIPQFFAIKSHSKATSI YGYLLSINGVIALTCQYFIYLLNKRYSHKSCIILGAITLTLGLFTFGLTENIVLLAFAMI VFTMGEMLVFTTIDIRIDEITDKYNKGAYYSLLGLQNIGSLLAPVIGGLIITQFKSGMLI FSILSLITSFSIVLFYKSNKIKI Prediction of potential genes in microbial genomes Time: Sun May 29 07:27:18 2011 Seq name: gi|224999943|gb|ACJC01000057.1| Staphylococcus epidermidis W23144 contig00096, whole genome shotgun sequence Length of sequence - 6238 bp Number of predicted genes - 8, with homology - 6 Number of transcription units - 5, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 284 - 325 8.0 1 1 Tu 1 . - CDS 411 - 2954 1836 ## Ppro_0107 hypothetical protein - Prom 3027 - 3086 12.7 + Prom 2949 - 3008 7.4 2 2 Tu 1 . + CDS 3166 - 3774 753 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Term 3790 - 3833 3.2 3 3 Tu 1 . - CDS 3883 - 4056 159 ## - Prom 4101 - 4160 5.6 4 4 Op 1 . - CDS 4236 - 4427 102 ## - Prom 4448 - 4507 3.6 5 4 Op 2 . - CDS 4518 - 5021 485 ## gi|242241785|ref|ZP_04796230.1| hypothetical protein HMPREF0791_0311 6 4 Op 3 . - CDS 5038 - 5436 287 ## THA_2027 transposase repeat family IS200 - Prom 5458 - 5517 8.1 7 5 Op 1 . - CDS 5534 - 5755 200 ## gi|242241787|ref|ZP_04796232.1| hypothetical protein HMPREF0791_0313 8 5 Op 2 . - CDS 5834 - 6064 176 ## SAVP001 replication initiator protein A - Prom 6124 - 6183 2.0 Predicted protein(s) >gi|224999943|gb|ACJC01000057.1| GENE 1 411 - 2954 1836 847 aa, chain - ## HITS:1 COG:no KEGG:Ppro_0107 NR:ns ## KEGG: Ppro_0107 # Name: not_defined # Def: hypothetical protein # Organism: P.propionicus # Pathway: not_defined # 6 832 16 847 869 287 27.0 2e-75 MIIDDIVKWIEEQPYWQQVIAKKILDKNHIYDEDIEDFFSIFMKYNNLEHGNFNREKIEF RNITNTTDEHKIANWKGLDNVIGVNAIKDNANLVIGPQLTLIYGENGSGKSGFTRLLNNI FISRGDTRLLSNIFKDNPSPPSANINFETNDGNIDKLYYPKDSNHPYTDHVSVFDSHSAL HDLTQESELSFSPTEFKFFDKLLEIVQKLKEKFEAKINDKTLDNTFINHFDKETSIKRLL LNLNTKDDFDELKIKVKLTENDMENHANNNKRISELQSMQIFDKKQEYQNLISILEDVKK TIKKLNPLFSSAYLSEVKGLIEERNHYKDVSLTEGIAQFKDENIEKLGSKEWKDFIESAY KYYTTINHSVNYCIFCHQDISNIKLIDKYWKYLKNESEKILAVKNNSIKKEERRFKLINT TILNKDSILSYFLKDDNIDLFNSINQASNNFESLKDKVLKALNNLQWDSQIKGYNFDYNE IEKVINNLNNLIEDLDEDSVKKEIEELQIKENEFNDKLKVEKLLPKIEDFINNKEWVDNA SKIKINTRSITSKQNSLFSKYVTDTYIETFNNECQKLNANFSAEIKQRGRKGTTLNKLTI QEKKPIDILSEGEQRAIALANFLSETSMNKNNVCIVFDDPVSSLDHKRKEIIADRLIDEA QQKQVVIFTHDLPFLLLMQNKSSEKQLDCRHNTLRKIKNETGISTNSHPWISMTVKRRIG YLKEQLQNITTYYNNISSDAPEEQLEYSYKAKMWCEELRETWEKSIEELLLNGSIERFNP AIQTSRLKKAPFNRELYEEVEKGMTESSKWVHDRSSALGEETPSPEQLKEYIDDLEKFTK KLKKLIK >gi|224999943|gb|ACJC01000057.1| GENE 2 3166 - 3774 753 202 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 199 1 199 199 266 70.0 2e-71 MIIGYARVSSIDQNLERQLDNLKTFGVEKIFTEKQSGKSITNRPVFQEALNFVRMGDRFV VESIDRLGRNYDEVINTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMV SEQERNENKRRQAQGIQVAKEKGVYKGRPQLYSPNAKDPQKRVIYHRVVEMLEEGKTISK IAKEVNITRQTIYRIKHDSGLS >gi|224999943|gb|ACJC01000057.1| GENE 3 3883 - 4056 159 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MREKLETFNIIAIIGIILFIFTLVSNIALATKFIVFSVIFVFLVINAIIYYMMTRKR >gi|224999943|gb|ACJC01000057.1| GENE 4 4236 - 4427 102 63 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKPLVKTSGFLAECPSYCPRRFIGISYYRVFENGIIYNKARISQTSNLGAERRCIILLII FVN >gi|224999943|gb|ACJC01000057.1| GENE 5 4518 - 5021 485 167 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241785|ref|ZP_04796230.1| ## NR: gi|242241785|ref|ZP_04796230.1| hypothetical protein HMPREF0791_0311 [Staphylococcus epidermidis W23144] # 1 167 1 167 167 289 100.0 4e-77 MNKKQGLIAIVVGCSVILGACQGVHDDPLANKKYKVEDTDYSISFNGKDRATMSWTEGAP DNMIKDSTPFNYEIKKDAGKKFLVLERDSSEFPDGYKDELHFYDDRSIDYDHSKYYEVYE IKEKNKDDITLTEKDLQQSINDREIDKKLFKHPDKSEDGRDLALTKQ >gi|224999943|gb|ACJC01000057.1| GENE 6 5038 - 5436 287 132 aa, chain - ## HITS:1 COG:no KEGG:THA_2027 NR:ns ## KEGG: THA_2027 # Name: not_defined # Def: transposase repeat family IS200 # Organism: T.africanus # Pathway: not_defined # 1 129 1 127 153 65 33.0 6e-10 MFYNKRTQSLYDLNYYLVIATNQKRSYISEKQSTLLKRHFLKVAKTYSVHLLYWEYHDFY IEISFSVDKGQTSVSDFVAVFKSTSSFNIKKYFPEILDERIESKPFWNKGYFLKTLGSVS EKEKDEWLKKLK >gi|224999943|gb|ACJC01000057.1| GENE 7 5534 - 5755 200 73 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241787|ref|ZP_04796232.1| ## NR: gi|242241787|ref|ZP_04796232.1| hypothetical protein HMPREF0791_0313 [Staphylococcus epidermidis W23144] # 1 73 1 73 73 110 100.0 4e-23 MTKNTYNESMYQDYIGQQVIFYLFTEKRIIATIKEERRFELLIERIVKYKNSGKIEQKKT ILPKSAIIFEDLK >gi|224999943|gb|ACJC01000057.1| GENE 8 5834 - 6064 176 76 aa, chain - ## HITS:1 COG:no KEGG:SAVP001 NR:ns ## KEGG: SAVP001 # Name: repA # Def: replication initiator protein A # Organism: S.aureus_Mu50 # Pathway: not_defined # 2 76 220 290 311 65 50.0 4e-10 MNYSLSEIQIIKGIILKAKRSFHDERTDEIVMPYTLENIEDELIDVLKRFRIILKKKNES VQYMQSYLMCCIKSEF Prediction of potential genes in microbial genomes Time: Sun May 29 07:28:00 2011 Seq name: gi|224999942|gb|ACJC01000058.1| Staphylococcus epidermidis W23144 contig00097, whole genome shotgun sequence Length of sequence - 24828 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 13, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 4026 4137 ## SERP1482 cell wall surface anchor family protein - Prom 4098 - 4157 12.4 - Term 4157 - 4193 2.6 2 2 Tu 1 . - CDS 4203 - 5420 1323 ## SE1628 hypothetical protein - Prom 5525 - 5584 9.8 - Term 5793 - 5844 2.7 3 3 Tu 1 . - CDS 5983 - 6540 444 ## gi|242241792|ref|ZP_04796237.1| hypothetical protein HMPREF0791_0318 - Prom 6670 - 6729 5.7 + Prom 6811 - 6870 5.8 4 4 Op 1 . + CDS 7064 - 7543 373 ## SAS0371 hypothetical protein 5 4 Op 2 . + CDS 7558 - 7950 399 ## SAS0370 hypothetical protein + Term 7957 - 7993 4.0 + Prom 8062 - 8121 8.7 6 5 Tu 1 . + CDS 8290 - 8520 215 ## COG0582 Integrase - Term 8820 - 8855 0.4 7 6 Op 1 41/0.000 - CDS 8860 - 10479 1577 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 8 6 Op 2 . - CDS 10535 - 10819 479 ## COG0234 Co-chaperonin GroES (HSP10) - Prom 10958 - 11017 6.1 + Prom 10909 - 10968 7.8 9 7 Tu 1 . + CDS 10994 - 11734 607 ## COG1266 Predicted metal-dependent membrane protease + Term 11743 - 11799 6.2 - Term 11729 - 11786 10.2 10 8 Tu 1 . - CDS 11795 - 13243 2126 ## SE1632 Ser-Asp rich fibrinogen-binding protein - Prom 13277 - 13336 12.5 + Prom 13350 - 13409 8.8 11 9 Tu 1 . + CDS 13649 - 14380 798 ## COG0388 Predicted amidohydrolase + Term 14385 - 14438 8.1 + Prom 15011 - 15070 4.3 12 10 Op 1 . + CDS 15127 - 15717 280 ## COG4512 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide 13 10 Op 2 . + CDS 15723 - 15863 115 ## gi|242241803|ref|ZP_04796248.1| accessory gene regulator protein D 14 10 Op 3 9/0.000 + CDS 15888 - 17177 774 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 15 10 Op 4 . + CDS 17194 - 17910 529 ## COG3279 Response regulator of the LytR/AlgR family + Term 17911 - 17969 14.0 - Term 17898 - 17958 6.1 16 11 Op 1 4/0.000 - CDS 17978 - 18937 1065 ## COG0524 Sugar kinases, ribokinase family 17 11 Op 2 5/0.000 - CDS 18944 - 20416 1268 ## COG1621 Beta-fructosidases (levanase/invertase) - Prom 20457 - 20516 10.1 - Term 20446 - 20501 0.1 18 11 Op 3 1/1.000 - CDS 20676 - 21629 869 ## COG1609 Transcriptional regulators - Prom 21660 - 21719 8.3 19 12 Tu 1 . - CDS 21764 - 23014 1223 ## COG0004 Ammonia permease - Prom 23067 - 23126 4.5 - Term 23209 - 23249 3.1 20 13 Op 1 10/0.000 - CDS 23434 - 23658 338 ## COG0425 Predicted redox protein, regulator of disulfide bond formation 21 13 Op 2 . - CDS 23710 - 24762 1096 ## COG2391 Predicted transporter component Predicted protein(s) >gi|224999942|gb|ACJC01000058.1| GENE 1 3 - 4026 4137 1341 aa, chain - ## HITS:1 COG:no KEGG:SERP1482 NR:ns ## KEGG: SERP1482 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 1340 1 1340 1973 1925 83.0 0 MKENKRINNLDKNNTRFSIRKYQGYGATSVAIIGFIIISCFNEAKADSDKYEIRSHQQSM TNHLTTLPSDNQENTSNKEINNQNHDISQLSLNKSIQMDELKKLIKQYKAIDLNDKTEES IKLFQADLVQAESLMNNPQNQQNVDAFYHKFLNSAGKLRKKETVSYKHERSESSTYRSGD EVRSQTYSHIRHKRNAVSFRSADQSNLSNDPLKVNETNPEIQNGNFSQVSGGSLPTSSKR LTVVTNVDNWHSYSTDPNPEYPMFYTTTAVNYPNFMSNGNAPYGVILGRTTDGWNRNVID SKVAGIYQDIDVVPGSELNVNFISTSPVFSDGAAGAKLKISNVEQNRVLFDSRLNGMGPY PTGKLSAMVNIPNDINRVRISFLPVSSTGRVSVQRSSREHGFGDNSSYYHGGSVSDVRIN SGSYVTSKVTQREYTTQPNSSNDTFARATINLSVENKGHNQSKDTYYEVVLPQNSRLIST RGGSGNYNNATNKLSIRLDNLNPGDRKDISYTVDFESLSPKLINLNAHVLYKTNATFRGN DGQRTGDNIVDLQSIALLMNKDVLETELNEIDKFIRDLNKADFTIDSWSALQEKMTEGRN ILNEQQNQVALDNQASQKTINNVTQSLEILKNNLKYNTPPQPIIKSNNQIPNITISPAEK ADKLTITYQNIDNEKASIIANKLNNQWSLNNNIPGIEIEMQTGLVTIDYKAVYPESIIGA NDKTGNSDASAESRITMPRKEATPLSPIVEVNEERVNVTIVPNGEATQIDVKYRTLDGQE TTLIASKNESSWTLNKQIDHVNVDENSGKVTMDYQAVQPQSEIIATETKGNSDVSAESRI TMPRKEATPLSPIVEANEERVNVTIVPNGEATQIAIKYRTPDGQEATLIASKNESSWTLN KQIDHVNVDENSGKVTMGYQAVQPESEVIATETKGNSDASTENRVTMPRKEVTPLSPIVE ANEEHVNVVIAPNGEATQITVKYRTPDGQEATFIASKNESSWTLNKQIDHVNVDENSGKV TIDYQAVQPESEIIATETNGNSDASAENRVTMPVKEKTPAPPISIVNESNASVEIIPQVK VTRLSLQYIDAKGQQQNLIATLNQNQWTLNKNVSHITLDNNTGKILINYQAVYPESEVIA RESKGNSDSSNVSMVIMPRKEATPLSPIVEANEERVNVTIAPNGEATQIAVKYRTPDGQK ATLVASKTNQQWTLNKQIDYVNVDENSGKVTMGYQAVQPESEIIATETKGNSDASAESRV IMPRKTATPKPPIIKVDEMNASLAIIPYKNNTAINIHYIDKKGIKSMVTAIKNNDQWQLD EKIKYVKIDAKTGTVIINYQI >gi|224999942|gb|ACJC01000058.1| GENE 2 4203 - 5420 1323 405 aa, chain - ## HITS:1 COG:no KEGG:SE1628 NR:ns ## KEGG: SE1628 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 405 1 357 357 305 81.0 2e-81 MKDIKPNNSKLIQTYLSKKTIRYGTASALTLALYLFNSNVTVYADENTANQGTSPKTSQT APTNNNENTDATAVTTDQNNNDEEEYDASYELPILYVTVWLDDQGNIIKDAVEDAKTPAS ERQPVKIPGYQHYRTSVSDGITKFIYRKISTAQSPIVENNQQNNNTNNVVETTNQNKDEV NGKEQNQANTSVTNTQITKNEKDEDTKTLQKDKDEKESKDTKTPKKDKENKDTKTPKKDK ENKDTKTPKKDREEKKPVITSNGKDEKDEDRKTPKKDKEEKITKTPKKDREEKKPVIPSN GKVEKDEDRKTSKKDKEEKITKTSKKEREEKSPAIPKSDIDEKDTKITKKDKVDEITTTS KKDNNNDVQDKLPETGKSNDIQNPALIMLLAGLGLLGLFRNKIRE >gi|224999942|gb|ACJC01000058.1| GENE 3 5983 - 6540 444 185 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241792|ref|ZP_04796237.1| ## NR: gi|242241792|ref|ZP_04796237.1| hypothetical protein HMPREF0791_0318 [Staphylococcus epidermidis W23144] # 1 185 2 186 186 307 100.0 2e-82 MTTIIISICSVIFSICSFIVALLNRLDNLRPQIYVILNTKKDQEGKRIKAENIEIKNFGK VPGIITAIKIICEENIYTNNKQYKFESMFETADNNYISLEKVLNLLCKNHILTPNQSLIL PINQPTKSKNENLEKLSNYNEVQEYSINTISEIDTTLSIKVYYQKSKKGLTFNHTYKDTS YLICK >gi|224999942|gb|ACJC01000058.1| GENE 4 7064 - 7543 373 159 aa, chain + ## HITS:1 COG:no KEGG:SAS0371 NR:ns ## KEGG: SAS0371 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MSSA476 # Pathway: not_defined # 1 159 1 159 159 189 65.0 2e-47 MNLSKSIGSLVLSAIVVSSVSPLANANEVQESSQKVNQPQYVNVDGVKINRNPDLPQNPQ AQERIGATKVAKTAIKFIINHKSDARKVIKKVGGNKAANLFDKAYSPIVKELKPLLKLSD VPAQAVGDAAYRGALNAGLSKGNAGIISTTIKESISWLF >gi|224999942|gb|ACJC01000058.1| GENE 5 7558 - 7950 399 130 aa, chain + ## HITS:1 COG:no KEGG:SAS0370 NR:ns ## KEGG: SAS0370 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MSSA476 # Pathway: not_defined # 1 129 1 129 130 142 65.0 4e-33 MLEDKNDIRLLYQSIQELASEMGQSQLNTKTVSLIFLEMDLKYSVFEEVQANFLKYIAHR NSNEIMYLDLVKIINSALPTDRELSSVIINQIIVGFANNYYPILKEIASNIISEEGHTIY KHFNPKNLDD >gi|224999942|gb|ACJC01000058.1| GENE 6 8290 - 8520 215 76 aa, chain + ## HITS:1 COG:SA1835 KEGG:ns NR:ns ## COG: SA1835 COG0582 # Protein_GI_number: 15927603 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 16 76 252 314 390 61 49.0 4e-10 MSISFRMEFINKIITKLKQQIETLSKNNQTIKFIDVYEIQDKWKDALYIDNDFVFTDYNG YPLVIRKLSTWINSIM >gi|224999942|gb|ACJC01000058.1| GENE 7 8860 - 10479 1577 539 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 539 3 547 547 612 56 1e-175 MAKDLKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKDYTTPLITNDGVTIAKEIE LEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQSMIQEGLKNVTSGANPVGLRQGID KAVQVAIEALHEISQKVENKNEIAQVGAISAADEEIGRYISEAMDKVGNDGVITIEESNG FNTELEVVEGMQFDRGYQSPYMVTDSDKMIAELERPYILVTDKKISSFQDILPLLEQVVQ SSRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVIT DDLGLELKDASLDMLGTANKVEVTKDHTTVVDGNGDENNIDARVGQIKAQIEETDSEFDK EKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNI YQKVSEIKAEGDVETGVNIVLQALQAPVRQIAENAGLEGSIIVERLKHAEAGVGFNAATN EWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEPENNEQPGMGGMPGMM >gi|224999942|gb|ACJC01000058.1| GENE 8 10535 - 10819 479 94 aa, chain - ## HITS:1 COG:SA1837 KEGG:ns NR:ns ## COG: SA1837 COG0234 # Protein_GI_number: 15927605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Staphylococcus aureus N315 # 1 94 1 94 94 135 82.0 3e-32 MLKPLGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIIAVGQGRLLDNGTQVAPQVSE GDTIVFQQYAGTEVKRGDKTYLILNEEDILAIIE >gi|224999942|gb|ACJC01000058.1| GENE 9 10994 - 11734 607 246 aa, chain + ## HITS:1 COG:SA1838 KEGG:ns NR:ns ## COG: SA1838 COG1266 # Protein_GI_number: 15927606 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 1 243 1 243 247 246 60.0 3e-65 MKRLWVSLLTVLFYGLAQILPGLVLGSHLLGDMSKMQTAQTMIIMQVSIFIIAALLIIFM QATIKNPTQLEQGHKEPKRYILAWVLLGFCIVMIYQFIISIILFAINGSPQRSPNTERLM AIAKQMPIFIVLISIVGPILEEYVFRKVIFGELYNFIKGSRVVSFIIASVVSSLIFALAH NDFKFIPVYFGMGVIFSLAYVYTKRIAVPIGIHMLMNGSVVLAQVIGGDSIKKLQEQATF IFHFIF >gi|224999942|gb|ACJC01000058.1| GENE 10 11795 - 13243 2126 482 aa, chain - ## HITS:1 COG:no KEGG:SE1632 NR:ns ## KEGG: SE1632 # Name: not_defined # Def: Ser-Asp rich fibrinogen-binding protein # Organism: S.epidermidis # Pathway: not_defined # 1 481 5 484 485 481 90.0 1e-134 MKKFNIKHSFMLTGFAFMVTTSLFSHQAHAEGSHPIDINFSKDQIDKNTAKSNTINEVND TSRTGNSMNSDNDLDTDIVSDSDSDSDIDTYLDSDSDSDGDSDSGSDSGADSDSDSDSDS DSDSNTDSDSDSDSDSDSNADSDSDSDSDSDADSDSDSDSDSDSDSDSDADSDSDSDSDS DSDSGADSDSDSDSDSDSDSDSDSDSDSDTSSGKGSHTGKKPSNTKGNTNRPSQSHTNQP QRPKYNQTNQNNIDHNINHTRINGDGAPYKRRQNIINSSSGHRNQNNINQFIWNKNGFFK SQNNIEHRMNSSDNTNSLISRFRQLATGAYKYNPFLINQVKNLNQLDGKVTDSDIYSLFR KQSFRGNEYLNSLQKGTSYFRFQYFNPLNSSKYYENLDDQVLALITGEIGSMPELKKPTD KEDKNHSAFKNHSADEITTNNDEHSKDYDKKKKMHRSLLSLSIAIIGIFLGVTGLYIFRR KG >gi|224999942|gb|ACJC01000058.1| GENE 11 13649 - 14380 798 243 aa, chain + ## HITS:1 COG:SA1841 KEGG:ns NR:ns ## COG: SA1841 COG0388 # Protein_GI_number: 15927609 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Staphylococcus aureus N315 # 8 243 26 261 261 318 64.0 9e-87 MQNIKTKFKQYLDKDTSVVVLPEMWNNGYALEELKQKADKNLKDSSLFIKDLAHTFNVDI IAGSVSNIRENHIYNTAFAINKNGELINEYDKIHLVPMLSEPDFLCGGHVVPEPFYLSDQ TLVTQIICYDLRFPEILRYPARKGAKIAFYVAQWPNSRLDHWLSLLKARAIENDIFIVAC NSCGDDGHTSYAGNSIVINPNGEILGHLDDKEGVLTTHIDIDLVDQQREYIPVFKNLKPH LYK >gi|224999942|gb|ACJC01000058.1| GENE 12 15127 - 15717 280 196 aa, chain + ## HITS:1 COG:SA1842 KEGG:ns NR:ns ## COG: SA1842 COG4512 # Protein_GI_number: 15927611 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; K Transcription # Function: Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide # Organism: Staphylococcus aureus N315 # 14 196 5 187 187 166 49.0 2e-41 MTLEESRRQVKIIDKKIEQFAQYLQRKNNLDHIEFLKVRLGMQVVAGNIEKTVVLYGLSY FFDLLIFTFLTHISYFLLRIFAHGAHAKTTLQCHIQNILYFLFLPWLVLHLPLSTNIFYF LAMISFLLVISFAPAATKKQPIPKRLLKKKKVLSILSFIVIITIALTLEEVFKKNVILGV VIESITLLPIFFPKED >gi|224999942|gb|ACJC01000058.1| GENE 13 15723 - 15863 115 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241803|ref|ZP_04796248.1| ## NR: gi|242241803|ref|ZP_04796248.1| accessory gene regulator protein D [Staphylococcus epidermidis W23144] # 1 46 1 46 46 85 100.0 8e-16 MNLLGGLLLKIFSNFMAVIGNASKYNPCSNYLDEPQVPEELTKLDE >gi|224999942|gb|ACJC01000058.1| GENE 14 15888 - 17177 774 429 aa, chain + ## HITS:1 COG:SA1843 KEGG:ns NR:ns ## COG: SA1843 COG2972 # Protein_GI_number: 15927613 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Staphylococcus aureus N315 # 64 426 8 370 371 370 57.0 1e-102 MGKLDFLPFAAIQVFLLVWVTKTIANIKFVGKDYIFITGIIILSAILYNVYASQALVLVV LIIIIFFYSKVRWYSIVIVLMSTLLSYLTNFITVAISLYTENIIHNIYFYNIFHFSIFII LSLILAHLFKHLLIRLRYSYLYLSKRYYIIISFVLAIAFIYFYIISQTNLQESNSLNFYA IIFVSITVLLSLVILLLSAFALREMKYKRKLQEIEAYYEYTLRIESINNEMRKFRHDYVN ILTTLSDYIREDDMPGLRKYFDEHIVPMKDKLKTRSIKMNGIEKLKVREIKGLITTKIIQ AQEKRIPISIEVPDEIDRIDMNTVELSRIIGIIVDNAIEASENLEEPLINIAFIDNDESV TFIVMNKCSDDIPKIHELFEQGFSTKGDNRGLGLSTLKELTDSNENVLLDTVIENGYFVQ KVEINNKES >gi|224999942|gb|ACJC01000058.1| GENE 15 17194 - 17910 529 238 aa, chain + ## HITS:1 COG:SA1844 KEGG:ns NR:ns ## COG: SA1844 COG3279 # Protein_GI_number: 15927614 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 238 1 238 238 408 87.0 1e-114 MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELTLATNDPYEVLEQSKELNDIGCYFLDI QLEADMNGIKLASEIRKHDPVGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRI IDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIMFFESSTKSHRLIAHLDNRQI EFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI >gi|224999942|gb|ACJC01000058.1| GENE 16 17978 - 18937 1065 319 aa, chain - ## HITS:1 COG:SA1845 KEGG:ns NR:ns ## COG: SA1845 COG0524 # Protein_GI_number: 15927615 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 1 319 1 319 319 400 60.0 1e-111 MRRLFAIGEALIDFIPHVTHSKLKDVEQFSRQVGGAPCNVAATVSKLGGKSEMITQLGND AFGDIIVETIEQLGVGTQYIKRTNKANTALAFVSLQDDGQRDFSFYRKPSADMLYQPENI DNIQVFQDDILHFCSVDLIESDMKYAHEKMIEKFESVGGTIVFDPNVRLPLWEDKLECQR TINAFIPKAHIVKISDEELLFITGKKNEDEAIQSLFRGQVNVVIYTQGAQGATIFTKDDY RIHHEGYQVQAIDTTGAGDAFIGAIIYCILQARHSECKDLFKEKGKDILAFSNRVAALTT TKHGAIESLPTKEDIKDYY >gi|224999942|gb|ACJC01000058.1| GENE 17 18944 - 20416 1268 490 aa, chain - ## HITS:1 COG:SA1846 KEGG:ns NR:ns ## COG: SA1846 COG1621 # Protein_GI_number: 15927616 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Staphylococcus aureus N315 # 2 489 3 490 494 777 75.0 0 MEWTREERYQRIEDVDETYLEQLKHQVDTSLYRQTFHIQPEMGLLNDPNGLIYYKGYYYI SHQWFPLGAVHGLKYWFNYKSKDLLHFEPQGTLLKPDTKYDSHGVYSGSAFEYQNHLYYM YTGNHRDQHWNRISSQMIARMNKDGKIEKFPKPVIYGQPEGYTSHFRDPKVFEKNNQLYA ILGAQNENEMGRLLLYRSQDVVDWHFEGEIKTNLTQFGYMWECPDYFRLGNKDVILMCPQ GVEAEGDKFRNIYQSGFMIGDLNFNNLFFDHESFQELDNGFDFYAPQTFIDADGQRILIG WMGLPDTEYPTDKEGWAHCLTIPRVLTIENGKLKQRPFKQLEDLRTNKETALGYANKFKR KLHPYEGKQYEMIIDILENDASEIYFELRSSRSESTLITYNKHENKLTLDRTDSGKLPSN VDGTTRSTILDSPLKQLQIFVDTSSIEIFCNDGERVLTSRIFPNEDATGIKASTESGQVY LKFTKYELKG >gi|224999942|gb|ACJC01000058.1| GENE 18 20676 - 21629 869 317 aa, chain - ## HITS:1 COG:SA1847 KEGG:ns NR:ns ## COG: SA1847 COG1609 # Protein_GI_number: 15927617 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 316 1 316 316 387 63.0 1e-107 MKNISDIAKLAGVSKSTVSRFLNNGSVSPATKEKITKIIEENNYQPNQFAQSLRARRTNL IGAIIPRMNSYAVDETIKGLVHQCNKHRYQLLLNYTGLEIDGEISALKTLSRSKVDGIVL MATHITEAHIEVIEKIDVPVIIVGQEHDQLYSIYHDDYEAGYKIGVLIGEKGCRNVHFFG VSEEDIAVGVQRKLGVIQALNDYHISPKIYETTFKHEQAFKDVSQQLKRVHHADAIVGAT DTIAFAIHKYCSDHQQRFYNCSIYGFGGDPMTQIVSPVIQTVSYNYFEAGEQALKEINQL LKGEQTALKIKIPIHLN >gi|224999942|gb|ACJC01000058.1| GENE 19 21764 - 23014 1223 416 aa, chain - ## HITS:1 COG:SA1848 KEGG:ns NR:ns ## COG: SA1848 COG0004 # Protein_GI_number: 15927618 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Staphylococcus aureus N315 # 1 416 1 416 416 522 72.0 1e-148 MNMNDTIFLFLCTLLVWLMTPGLSLFYGGLVQSKNALNTVMQSMVAIVIVTFIWIMIGFS LSFDGGNQWIGGLKFLGLHHVGFETSKTLSTHIPLSLFMLFQMMFCTIAVSILSGSIAEK MRFIPYLIFVSLWVLLIYSPVAHWVWGGGWISKIGAIDYAGGTVVHITSGVSGLVLGIMI GIGKKKEKHTPHNLLITLIGGILVWLGWYGFNVGSAFTLDHIAMISFVNTVIGASAGAFG WLIFEYILKKTTSLLGLLSGALSGLVAITPAAGYVSYMSAMIIAIIGGIGCYIVINLIKV KLQYNDALDAFGIHGVGGILGAVFTGVFQSHQINSAVQNGFIYTGDFKIVVIQLGAAIAT VVFSAIVTFLIARFIKIFTPLATTQEEDKTGLDVIVHGEKAYFYGELNKFNRHIKF >gi|224999942|gb|ACJC01000058.1| GENE 20 23434 - 23658 338 74 aa, chain - ## HITS:1 COG:SA1849 KEGG:ns NR:ns ## COG: SA1849 COG0425 # Protein_GI_number: 15927619 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 1 73 1 73 74 133 86.0 9e-32 MVYELGTVGMVCPFPLIEAQKKMNDLNQGDELKIDFDCTQATEALPNWAAENGYPVTNYE QLDDASWTITIQKA >gi|224999942|gb|ACJC01000058.1| GENE 21 23710 - 24762 1096 350 aa, chain - ## HITS:1 COG:SA1850 KEGG:ns NR:ns ## COG: SA1850 COG2391 # Protein_GI_number: 15927620 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Staphylococcus aureus N315 # 2 348 1 349 359 507 75.0 1e-143 MVWTIISGLVVGILLGFVMQRTRFCLAGGFRDMYVQKSNKMFYALLIAITVQSIGLLILK NLNIIEVPAETFPVIGTILGSFVFGIGIVLAGGCATGTWYRAGEGLIGSWVALIFYALTS AVTKTGVLLPIMNQINKPTQVSTSMTSTTGIPQWILVTLLTVITIFLVVKTIRKPKIMVP QLKQKYSGIRHYLFEKRYHPFVAGIAIGFIALLAWPMSESTGRMGGLGITTPSANLVNYL ISGDLKFIDWGVLLVLGIFIGSYIAAKGSKEFRWRLPDIKTIRNSALGGIFMGFGASVAG GCSIGNGLVETATMSWQGWIALASMIIGVWFMSYFIFVKPMKKLQQVSQS Prediction of potential genes in microbial genomes Time: Sun May 29 07:28:52 2011 Seq name: gi|224999941|gb|ACJC01000059.1| Staphylococcus epidermidis W23144 contig00098, whole genome shotgun sequence Length of sequence - 6736 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 21 - 254 86 ## SERP1656 hypothetical protein - Prom 367 - 426 7.3 - Term 386 - 418 2.0 2 1 Op 2 . - CDS 441 - 1076 761 ## COG2344 AT-rich DNA-binding protein - Prom 1190 - 1249 8.2 + Prom 1154 - 1213 8.0 3 2 Tu 1 . + CDS 1423 - 3357 1953 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 3376 - 3423 5.6 - Term 3358 - 3416 5.1 4 3 Tu 1 . - CDS 3530 - 3700 59 ## gi|242241815|ref|ZP_04796260.1| conserved hypothetical protein - Prom 3761 - 3820 7.7 + Prom 3477 - 3536 6.1 5 4 Tu 1 . + CDS 3699 - 5315 1091 ## COG0249 Mismatch repair ATPase (MutS family) + Term 5349 - 5396 10.5 - Term 5333 - 5390 14.5 6 5 Op 1 9/0.000 - CDS 5398 - 6420 713 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase 7 5 Op 2 . - CDS 6417 - 6734 273 ## PROTEIN SUPPORTED gi|56418773|ref|YP_146091.1| ribosomal protein (S18)-alanine acetyltransferase Predicted protein(s) >gi|224999941|gb|ACJC01000059.1| GENE 1 21 - 254 86 77 aa, chain - ## HITS:1 COG:no KEGG:SERP1656 NR:ns ## KEGG: SERP1656 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 77 17 93 93 124 92.0 8e-28 MTVPGILLIRENKLEFQAYNQNNNPFNIQFELSSIVRYRISKGLLGNKLFIYYSDREWYK FSNLSKNDLNKLTKYLY >gi|224999941|gb|ACJC01000059.1| GENE 2 441 - 1076 761 211 aa, chain - ## HITS:1 COG:SA1851 KEGG:ns NR:ns ## COG: SA1851 COG2344 # Protein_GI_number: 15927621 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 211 1 211 211 334 81.0 8e-92 MSDDFKIPRATLKRLPLYYRFVSILKGKGIDRVNSKTISEALQIDSATIRRDFSYFGELG KKGYGYNIDSMLEFFKSELSESDQIKIAIIGIGNLGRALLTYNFSIHDEMTITEAFDIRS DIIGENIGDVVVKHSDDIKTTLESEDIDVVILTTPDNVAQQVADELVKAGVKGILNFTPR RIKTPQDVQVHHIDFGIELQSLLFFMKNYSK >gi|224999941|gb|ACJC01000059.1| GENE 3 1423 - 3357 1953 644 aa, chain + ## HITS:1 COG:SA1852 KEGG:ns NR:ns ## COG: SA1852 COG0488 # Protein_GI_number: 15927622 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Staphylococcus aureus N315 # 1 644 1 642 642 939 79.0 0 MILLQLNDISKSFDGEDIFTDVNFEVKTGERIGVVGRNGAGKSTLMKIIAGVENYDSGHI SKIKNLTMSYLTQQMTLNSEATVFEEMSKPFEHIKKIENLIKDETDWLARNGQDYESDEY QSHIEKYETLTNRYEQLDGYQYESKIKTVLHGLNFTENDFNKPINDFSGGQKTRLSLAQM LLKEPDLLLLDEPTNHLDMETTKWLEDYLKYFKGAIVIISHDRYFLDKIVTQVYDVALGN VKHYVGNYEQFIKQRNQYYEKRMQEFEKQQEEIKRLETFVEKNITRASTSGMAKSRRKTL EKMERIDKPMIDARSANIQFGFDRNTGNDVMHIHDLKIGYDSPITRPINLEVFKGDHIAI IGPNGVGKTTLIKTIAEKHPKLGGQIIFGANLQIGYYDQKQAEFKSNKTILDYVWDQYPH MNEKDVRAVLGRFLFVQEDVKKIINDLSGGEKARLQLALLMLQRDNVLILDEPTNHLDID SKEMLEQALKDFEGTIIFVSHDRYFINQLANKVFDLNLNGGQMYLGDYQYYIEKTEEAIA IKAHETEIQNNFENKEINQDANTSTYFSQKQQKRQQRKLERQIEHCERQIEELESQISHI EEQLTQPEVFNDPLKASKFANQKSETEQKLEQIMLEWEKLQEKL >gi|224999941|gb|ACJC01000059.1| GENE 4 3530 - 3700 59 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241815|ref|ZP_04796260.1| ## NR: gi|242241815|ref|ZP_04796260.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 56 1 56 56 92 100.0 6e-18 MKFSSPLSFSINYFINEYLKQLKMENKLSIGNVRTYQQNVSKLWVSSEVVCGYVNK >gi|224999941|gb|ACJC01000059.1| GENE 5 3699 - 5315 1091 538 aa, chain + ## HITS:1 COG:SA1853 KEGG:ns NR:ns ## COG: SA1853 COG0249 # Protein_GI_number: 15927623 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Staphylococcus aureus N315 # 1 537 1 535 536 580 54.0 1e-165 MTNNQTLVLIILTFIILITLVNVIISIIERRKQIAKINTLWDNKLKLESFIRPNSRFDAQ YRTYRDHYNKQSFIDDKTWSDLNMDTLFHKINFNFTAIGEMRLYATLRGMFKVNQTSLIN MFKDNKVFRLNVSYILSKIGKNVYPLFPDQMLPSKRNILLMFCPLLPFIGFAFIFLIPSK GILICLTFMILNAILSFKLKKSYDQDLKSVFYTANVIKQSQALSKIESTPAISVDFTHFK ASRRFSGLLARLESQDMVSSIIMFIKLVFMIDYVLFHLIQRSYFKYQEEVMACYDYISIL DNHYSIAMYQHTLTHYCYPKINNNINGLQMKSIIHPLLDEENAIANTIDISNHILLTGSN ASGKSTFMKAVALNLILAQSIQTATAYSFIYQPGYVMTSMANADDVLSGDSYFMSELKSI RRLFNTYQCNKIYCFIDEIFKGTNTTERIAASESVLSYLDNQKAYQVIAATHDVELSILL ENTYNNYHFNESIQENSIFFDYKIKPGKANTRNAIELLRITQFPIDIYQRAQQNIRNL >gi|224999941|gb|ACJC01000059.1| GENE 6 5398 - 6420 713 340 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 2 336 514 857 860 279 44 9e-88 MTNNTLILAIETSCDETSVSVVKNGTELLSNTVLSQIDSHKRFGGVVPEVASRHHVEGIT ATIDESLVSAKVKMEDIDAIAVTQGPGLIGALLIGINAAKALAFAYDKPIIPVHHIAGHI YANHLEQPLTFPLISLIVSGGHTELVYMKNHLDFEVIGETRDDAVGEAYDKVARTINLPY PGGPHIDRLAAKGKDIYDFPRVWLEKDSYDFSFSGLKSAVINKLHNLRQKNIEIVAEDVA TSFQNSVVEVLTHKAIHACKTYHVNRLIVAGGVASNKGLRAALSEACKKEGIHLTIPSPV LCTDNAAMIGAAGYYLYQAGLRGDLALNGQNNIDIETFSV >gi|224999941|gb|ACJC01000059.1| GENE 7 6417 - 6734 273 105 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|56418773|ref|YP_146091.1| ribosomal protein (S18)-alanine acetyltransferase [Geobacillus kaustophilus HTA426] # 1 105 44 150 150 109 50 5e-24 FATYFVIEFRDKIIGYVGLWLVVDQAQITTIAISKAFRGYGLGQLLLKYAMNYARFSCDV MSLEVRIDNDVAQHVYRNLGFQNGGKRKNYYGEGEDALVMWVNLK Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:02 2011 Seq name: gi|224999940|gb|ACJC01000060.1| Staphylococcus epidermidis W23144 contig00099, whole genome shotgun sequence Length of sequence - 12625 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 2, operones - 2 average op.length - 5.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 12/0.000 - CDS 115 - 777 206 ## PROTEIN SUPPORTED gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase 2 1 Op 2 . - CDS 758 - 1192 353 ## COG0802 Predicted ATPase or kinase - Prom 1314 - 1373 5.1 + Prom 1618 - 1677 11.5 3 2 Op 1 6/0.000 + CDS 1698 - 3386 1541 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase 4 2 Op 2 32/0.000 + CDS 3403 - 5145 1704 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 5 2 Op 3 15/0.000 + CDS 5145 - 5378 257 ## COG0440 Acetolactate synthase, small (regulatory) subunit + Prom 5385 - 5444 5.1 6 2 Op 4 5/0.000 + CDS 5500 - 6504 1460 ## COG0059 Ketol-acid reductoisomerase 7 2 Op 5 11/0.000 + CDS 6527 - 8062 1768 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 8 2 Op 6 10/0.000 + CDS 8059 - 9102 903 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 9 2 Op 7 30/0.000 + CDS 9118 - 10488 1565 ## COG0065 3-isopropylmalate dehydratase large subunit 10 2 Op 8 2/0.000 + CDS 10489 - 11058 412 ## COG0066 3-isopropylmalate dehydratase small subunit 11 2 Op 9 . + CDS 11073 - 12341 1067 ## COG1171 Threonine dehydratase + Term 12366 - 12408 5.3 Predicted protein(s) >gi|224999940|gb|ACJC01000060.1| GENE 1 115 - 777 206 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|238855674|ref|ZP_04645973.1| ribosomal protein ala-acetyltransferase [Lactobacillus jensenii 269-3] # 43 213 2 183 380 84 33 5e-16 MNYLLIDTSNQPLSVAIMKDNEVIAEKTTDIKKNHSVQLMPEIAEILSESKLNKTEITDI VVAEGPGSYTGLRIGVTVAKTLAYALNTNLYGVSSLKALASTVKDSTKLLVPIFDARREA VYAGVYQYQDNELITIIDDTYIPIFELIEKLHQLNQPYVFVGYHTEKIKHLLDSDIIEQL PKASSMKQLIQKPENIHSFTPKYHKLSEAERNWLNQQENN >gi|224999940|gb|ACJC01000060.1| GENE 2 758 - 1192 353 144 aa, chain - ## HITS:1 COG:SA1857 KEGG:ns NR:ns ## COG: SA1857 COG0802 # Protein_GI_number: 15927627 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Staphylococcus aureus N315 # 1 144 10 153 153 199 65.0 1e-51 MDKFAQILVKHLSAKDLILLNGDLGAGKTTLTQFIGKALGVKRTINSPTFNIIKSYTGSS IRLHHMDCYRLEGEEDDLGFDEYFEDNAIIVIEWSKFIKDFLPPNHLTININVKNANERQ VSIETHGQHYALVKEAILNELSSN >gi|224999940|gb|ACJC01000060.1| GENE 3 1698 - 3386 1541 562 aa, chain + ## HITS:1 COG:SA1858 KEGG:ns NR:ns ## COG: SA1858 COG0129 # Protein_GI_number: 15927628 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Staphylococcus aureus N315 # 1 562 1 562 562 1053 92.0 0 MRSDMIKKGDHQAPARSLLHATGALKQPTDMNKPFVAICNSYIDIVPGHVHLRELADIAK EAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPN CDKITPGMLLAAVRTNVPAIFCSGGPMKAGLSAQGKALTLSSMFEAVGAFKEGTISKEAF LDMEQNACPTCGSCAGMFTANSMNCLMEVLGLALPYNGTALSVSDQRREMIRQAAFRLVE NIKHDIKPRDIITQDAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLERINEIAKKT PYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRLTVTGKSLRENNEGKNIKN FEVIHPLETPYDKQGGLSVLFGNLAPKGAVIKVGGVDPSIKVFTGKAICFNSHDEAVEAI DNHKVREGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAV GHISPEAASGGPIGLIRDGDKITIDLINRTLNVDQSEEELYRRKNQLEPFKAKVKTGYLA RYTSLVTSANTGGIMQVPENLI >gi|224999940|gb|ACJC01000060.1| GENE 4 3403 - 5145 1704 580 aa, chain + ## HITS:1 COG:SA1859 KEGG:ns NR:ns ## COG: SA1859 COG0028 # Protein_GI_number: 15927629 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 26 579 35 588 589 945 81.0 0 MSNQKSMVSPHPSVHQTKNSQPLITRSGSQLLVEALQQEDVDFIFGYPGGAVLPLYDTFY DGKIKHILARHEQGATHAAEGYARVSGKTGVVVVTSGPGATNAITGITDAFSDSLPLVVF TGQVATPGIGKDAFQEADLLSMTTPITKHNYQVKKIEDIPRIVHEAFHLANTGRKGPVVI DFPKDMGVLKTDVELTQEINIPGYEVNSNPNKEDINRLIYMIKEAKKPLILAGAGINHSK SNHLLTEFVTKHQIPTVTTLLGLGAIPYHHPLFLGMGGMHGSYASNMALTNCDLLINLGS RFDDRLASKPDEFAPNAKVVHVDIDPSEINKVINTDLGIVADCKLVLENLCHEQVLTSTH EEWNDYCINNKSKYPFKYDDNDKTFCKPQKAIEYIGKVTNGNAIVTTDVGQHQMWTAQFY PFKNYGQWVTSGGLGTMGFGIPSAIGAQLAEPEKTVVCFVGDGGFQMTNQEMALLPEYEL NVKIVLINNGTLGMVKQWQDKFFNKRFSHSVFNDQPNFMKMAEAYGVKGFLIDSPDKLES SIDEAFAYHGPALIEVRISPVEPVNPMVPSGKSNHEMEGY >gi|224999940|gb|ACJC01000060.1| GENE 5 5145 - 5378 257 77 aa, chain + ## HITS:1 COG:SA1860 KEGG:ns NR:ns ## COG: SA1860 COG0440 # Protein_GI_number: 15927630 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Staphylococcus aureus N315 # 1 75 1 75 84 80 61.0 7e-16 MERTIHFTLVDQVSTLNRITSAFVRLQCNIDELHVKHSDKEGISNMKLKVNIKDDDTFKI VLKKLSQQVNVLSVKSE >gi|224999940|gb|ACJC01000060.1| GENE 6 5500 - 6504 1460 334 aa, chain + ## HITS:1 COG:SA1861 KEGG:ns NR:ns ## COG: SA1861 COG0059 # Protein_GI_number: 15927631 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Staphylococcus aureus N315 # 1 334 1 334 334 582 89.0 1e-166 MTKVYYDETVTQDALQGKKIAVIGYGSQGHAHAQNLKDNGYDVVIGLRPGRSFNKAKEDG FDVYTVSDATQQADVVMVLLPDEIQGKVYNEEIKPHLEKGNALAFAHGFNIHFSVIEPPS DVDVFLVAPKGPGHLVRRTFVEGSAVPALFGVQQDATGQARNIALSYAKGIGATRAGVIE TTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYE GGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKKVLEDIQNGNFSRRFVEDNKNGFKE FYQLREDQHGHQIEQVGRELREMMPFIKSKSIEK >gi|224999940|gb|ACJC01000060.1| GENE 7 6527 - 8062 1768 511 aa, chain + ## HITS:1 COG:SA1862 KEGG:ns NR:ns ## COG: SA1862 COG0119 # Protein_GI_number: 15927632 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Staphylococcus aureus N315 # 1 508 1 508 509 812 81.0 0 MEEHIQIFDTTLRDGEQTPGVNFSFDERLKIAKQLEKWGVDVLEAGFPASSTGSFKSVEA IAKTLTTTAVCGLARCKKSDIDAVYEATKEAVKPQVHVFIATSPIHLEHKLKMTQDEVLT SIKEHVSYAKQFFEVVQFSPEDATRTEIPFLIECVQTAINAGATIINIPDTVGFSYPTEY GEIFKQLTRAVKSNSKIIFSAHCHDDLGMAVANSLAAIEGGARRIEGTVNGIGERAGNAA LEEVALALYVRKDHYGLESQINLKETKKTSDLISRYAGIRVPRNKAIVGQNAFSHESGIH QDGVLKHRETYEIMTPQLVGVNTTELPLGKLSGKHAFAEKLKSLGYEIKLEDQVTLFKQF KEIADKKKNVSDRDIHAIIHGSEHEHNAIFQLDNLQLQYVSKGLQSAVVVIKERNGQIKQ DSSIGTGSIVAIYNAVDRIFKRDAELIDYRIDSVTEGTDAQAEVHVRIIINHIEVTGIGI DHDILKASCKAYIDAHAKYISEYELKEGIRT >gi|224999940|gb|ACJC01000060.1| GENE 8 8059 - 9102 903 347 aa, chain + ## HITS:1 COG:SA1863 KEGG:ns NR:ns ## COG: SA1863 COG0473 # Protein_GI_number: 15927633 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 345 1 345 348 524 73.0 1e-148 MSYKIVALPGDGIGPEILSGTLELLKLISEKYHFEYHLESHHFGGISIDNYGTPLTNEAL QSCKNADAILLGAIGGPKWTDPNNRPEHGLLKLRKSLNLFANIRPTFVTKGASHLSPLKQ DIVEGTDLVIVRELTSGIYFGEPSYVKKNEALDSLKYSSQEIERIVRIAFNLANRRRKKL TSVDKENVLSSSKLWRQIVNDVKKDFPEVEVNHMLVDACSMHLITQPTQFDVIVTENLFG DILSDEASVIPGSLGLSPSASFGQTGTRLYEPIHGSAPDIANEDKANPFGMVLSLALCLR ESLNQIDAANELESIVYSFIQSNKTTADLGGQYRTSEIFKLLKEKYL >gi|224999940|gb|ACJC01000060.1| GENE 9 9118 - 10488 1565 456 aa, chain + ## HITS:1 COG:SA1864 KEGG:ns NR:ns ## COG: SA1864 COG0065 # Protein_GI_number: 15927634 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Staphylococcus aureus N315 # 1 456 1 456 456 851 88.0 0 MGQTLFDKVWKKHVLHGKEGEPQLLYIDLHLIHEVTSPQAFEGLRIQNRKLRRPDLTFAT LDHNVPTIDIFNIKDEIAYKQITTLQQNAKDFGVHIFDMGSDEQGIVHMVGPETGLTQPG KTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQTKPKNLKININGSLPPGVYAK DIILYLINQYGVDFGTGYALEFTGETIKNLSMEARMTICNMAIEAGAKYGLMQPDETTFN YVKGRPYATDFDSSMEWWKELYSDDDAYFEKVIELDVTNLEPQVTWGTNPEMGVSFSNPF PEIKNANDQRAYDYMGLQPGQKAEDIKLGYVFLGSCTNARLSDLIEASHIIKGQQVHPNI TAIVVPGSRTVKKEAEALGLDKLFKDAGFEWREPGCSMCLGMNPDQVPEGVHCASTSNRN FEGRQGKGARTHLVSPAMAAAAAINGKFIDVRKVVV >gi|224999940|gb|ACJC01000060.1| GENE 10 10489 - 11058 412 189 aa, chain + ## HITS:1 COG:SA1865 KEGG:ns NR:ns ## COG: SA1865 COG0066 # Protein_GI_number: 15927635 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Staphylococcus aureus N315 # 3 189 4 190 190 337 84.0 7e-93 MEIKPITIYTGKTVPLFYDNIDTDQIIPKVHLKRVSKSGFGPFAFDEWRYLPDGSDNPDF NPNKPEYHGASILITGDNFGCGSSREHAAWALKDYGFNIIIAGSFSDIFYMNCTKNAMLP ICLNQKEREHLAQFDEITVDLPNQTVSTVSQSFHFDIDETWKNKLIHGLDDIAITLQFEN LIEKYEKTF >gi|224999940|gb|ACJC01000060.1| GENE 11 11073 - 12341 1067 422 aa, chain + ## HITS:1 COG:SA1866 KEGG:ns NR:ns ## COG: SA1866 COG1171 # Protein_GI_number: 15927636 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Staphylococcus aureus N315 # 1 422 1 422 422 707 85.0 0 MTVRTKVSTKDIDEAYLRLKNIVKETPLQFDHYLSQKYNCNVYLKREDLQWVRSFKLRGA YNAISVLSNEEKNKGITCASAGNHAQGVAYTAKKLNLKAVIFMPVTTPRQKINQVKFFGD NNVEIVLIGDTFDHCLAQALNYTKQHKMNFIDPFNNVYTIAGQGTIAKEILNQAEKEDNT FDYVFAAIGGGGLISGVSTYFKTHSPHTKIIGVEPTGASSMYQSVIINHSIVTLENIDKF VDGASVARVGDITFEIAKDKVDDYVQVDEGAVCSTILDMYSKQAIVAEPAGALSVSALEQ YKKQIENKTIVCIVSGGNNDINRMKEIEERSLLFEEMKHYFILNFPQRPGALREFVNDVL GPQDDITKFEYLKKTSQNTGTVIIGIQLKHHDDLIQLKDRVCQFDPSNIYINENKMLYSL LI Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:03 2011 Seq name: gi|224999939|gb|ACJC01000061.1| Staphylococcus epidermidis W23144 contig00100, whole genome shotgun sequence Length of sequence - 809 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 624 486 ## SERP2113 abortive infection family protein - Prom 663 - 722 5.0 Predicted protein(s) >gi|224999939|gb|ACJC01000061.1| GENE 1 3 - 624 486 207 aa, chain - ## HITS:1 COG:no KEGG:SERP2113 NR:ns ## KEGG: SERP2113 # Name: not_defined # Def: abortive infection family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 207 4 210 255 332 96.0 6e-90 MDDLKQNQSANEKPKGNKIVNILIFIGMILLIQIPIGVSLIALPFSVKFSQLTSIALSML ITGIALLIIWLVRNYYLSHTYERQYQSMRGKDIFINIGFLILAMVFSILSSLLMVIFTGN DTTANEKEINESLDLLLQKDHLPHISIVATVVLMICIIGPYLEELLFRGIFKETLFMKYR FWLPFIISSIIFSSQHLSTNIFSYAIY Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:08 2011 Seq name: gi|224999938|gb|ACJC01000062.1| Staphylococcus epidermidis W23144 contig00101, whole genome shotgun sequence Length of sequence - 4407 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 530 - 1339 666 ## SE_p606 mobilization protein 2 1 Op 2 . - CDS 1038 - 2048 901 ## COG3843 Type IV secretory pathway, VirD2 components (relaxase) 3 1 Op 3 . - CDS 2030 - 2413 360 ## SE_p603 mobilization protein - Prom 2626 - 2685 8.5 + Prom 2885 - 2944 2.5 4 2 Tu 1 . + CDS 2964 - 4407 983 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains Predicted protein(s) >gi|224999938|gb|ACJC01000062.1| GENE 1 530 - 1339 666 269 aa, chain - ## HITS:1 COG:no KEGG:SE_p606 NR:ns ## KEGG: SE_p606 # Name: not_defined # Def: mobilization protein # Organism: S.epidermidis # Pathway: not_defined # 1 269 1 269 269 396 79.0 1e-109 MALKDKYNDGDNKNEHQTPTSNPNEELQIVMKQLSEIQVSLKQIGTNSPKTQMSLSVADK LQSQQDLLMKRLEEIEKREHERNKRHNELLTTIETTASNFNQATEMTQKRFISVAKHYIE RINNDNLKQDFQTAIQEELEDVKADTHKAMEQLQTNQAELRQENNDYKKMIDERIKHNET AVKQYDQVIQRLTKGITAMFFIVALVMIAFLALSPLGDWLGVQHFYEWLNYVMKTGHSAW RYFMLIFYLVPYVLFGGLMYVILKAYERL >gi|224999938|gb|ACJC01000062.1| GENE 2 1038 - 2048 901 336 aa, chain - ## HITS:1 COG:SP1056_1 KEGG:ns NR:ns ## COG: SP1056_1 COG3843 # Protein_GI_number: 15900926 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Type IV secretory pathway, VirD2 components (relaxase) # Organism: Streptococcus pneumoniae TIGR4 # 54 152 81 181 402 61 37.0 2e-09 MATTKLSATKSTSRAINYAEKRAVEKSGLNCDVDYAKSSFKASRELYGKTDGNQGHVIIQ SFKPGEVTPEQCNQLGLALAEKLAPNHQVAVYTHADTDHVHNHIMINSIDLETGKKFNNN KQALRNVRNFNDEVCMEHGLSVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAI DQSQATNIDEFKDHLNQHGIEIERVTPKSITYRHLAEDKKVRGRKLGEDYNKGGIEDGFE RQIQRRRQQERASDTDIQPKRRTSNRDEATERDTGVTQADWDQFAQDTNELERRRQAAES ARLVDEKARRDREERARAKQASQRIINDDRDHGLEL >gi|224999938|gb|ACJC01000062.1| GENE 3 2030 - 2413 360 127 aa, chain - ## HITS:1 COG:no KEGG:SE_p603 NR:ns ## KEGG: SE_p603 # Name: not_defined # Def: mobilization protein # Organism: S.epidermidis # Pathway: not_defined # 1 126 1 126 128 196 94.0 2e-49 MSEQNTFVASDETVGRNHKPNRKEPKQISFRVSESEYLKLQQSAETLNMSVPAFVKKKAQ GSRLVAPKLDQATRQSIAKDLSMLGANANQIAKYCNQHQHEAPNYEALERNISELRERLD EIWQQLN >gi|224999938|gb|ACJC01000062.1| GENE 4 2964 - 4407 983 481 aa, chain + ## HITS:1 COG:lin0920 KEGG:ns NR:ns ## COG: lin0920 COG0488 # Protein_GI_number: 16799991 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Listeria innocua # 4 481 3 479 523 355 41.0 8e-98 MKIMLEGLHIKHYVQDRLLLNINRLNIYQNDRIGLIGKNGSGKTTLLHILYKKIVPEEGI VKQFSHCELIPQLKLIESTKSGGEVTRNYIRQALDKNPELLLADEPTTNLDNNYIEKLEQ DLKNWHGAFIIVSHDRAFLDNLCTTIWEIDEGRITEYKGNYSNYVEQKELERHREELEYE KYEKEKKRLEKAINIKEQKAQRATKKPKNLSLSEGKITGAKPYFAGKQKKLRKTVKSLET RLEKLESVEKRNELPPLKMDLVNLESVKNRTIIRGEDVSGTIEGRVLWKAKSFSIRGGDK MAIIGSNGTGKTTFIKKIVHGNPGISLSPSVKIGYFSQKIDTLELDKSILENVQSSSQQN ETLIRTILARMHFFRDDVYKPISVLSGGERVKVALTKVFLSEVNTLVLDEPTNFLDMEAI EAFESLLKEYNGSIIFVSHDRKFIEKVATRIMTIDNKEIKIFDGTYEQFKQAEKPTRNIK E Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:14 2011 Seq name: gi|224999937|gb|ACJC01000063.1| Staphylococcus epidermidis W23144 contig00102, whole genome shotgun sequence Length of sequence - 1101 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 453 356 ## COG1651 Protein-disulfide isomerase - Prom 483 - 542 10.4 - Term 660 - 703 12.3 2 2 Tu 1 . - CDS 770 - 1042 114 ## Predicted protein(s) >gi|224999937|gb|ACJC01000063.1| GENE 1 3 - 453 356 150 aa, chain - ## HITS:1 COG:SA2197 KEGG:ns NR:ns ## COG: SA2197 COG1651 # Protein_GI_number: 15927987 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Staphylococcus aureus N315 # 1 150 1 158 199 125 48.0 2e-29 MKKYLLIILLLPLLISCSNNHHNKKVTVVEYGDYKCPYCKDFDTKLMPKLEKEYIDKGKV SYSFVNLSFLGKDSIIGSRASHAVKNIAPKHYLEFHHKIYKEQPNNERKWITYKKVDNII DQLSIKKKEKEKIKENYKQKNSKAYKDAIK >gi|224999937|gb|ACJC01000063.1| GENE 2 770 - 1042 114 90 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKSRLAYTTPPLCTEVLPNYNKMSRNLYAGIQYTCIQYARIMYATTKYISQVNKFNSLLV YLFTCLLLNKYTLCVGYTSVTYINIKNHNV Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:20 2011 Seq name: gi|224999936|gb|ACJC01000064.1| Staphylococcus epidermidis W23144 contig00103, whole genome shotgun sequence Length of sequence - 379 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:20 2011 Seq name: gi|224999935|gb|ACJC01000065.1| Staphylococcus epidermidis W23144 contig00104, whole genome shotgun sequence Length of sequence - 482 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:21 2011 Seq name: gi|224999934|gb|ACJC01000066.1| Staphylococcus epidermidis W23144 contig00105, whole genome shotgun sequence Length of sequence - 2604 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 378 - 437 3.8 1 1 Tu 1 . + CDS 514 - 1518 799 ## LJ1751 hypothetical protein - Term 1484 - 1529 7.1 2 2 Tu 1 . - CDS 1539 - 2153 565 ## gi|242241838|ref|ZP_04796283.1| hypothetical protein HMPREF0791_0364 - Prom 2197 - 2256 14.7 3 3 Tu 1 . + CDS 2295 - 2604 340 ## gi|242241839|ref|ZP_04796284.1| hypothetical protein HMPREF0791_0365 Predicted protein(s) >gi|224999934|gb|ACJC01000066.1| GENE 1 514 - 1518 799 334 aa, chain + ## HITS:1 COG:no KEGG:LJ1751 NR:ns ## KEGG: LJ1751 # Name: not_defined # Def: hypothetical protein # Organism: L.johnsonii # Pathway: not_defined # 11 194 55 229 268 76 32.0 1e-12 MYGEKQSILGGKDGYDSILVWGRNEKDYIYLMYSLTNPNMKFSLKFGGRALAIYLMQYKY FYNKETNVYEILNKLDTKCSIEIDDELQRVRLSRLDIAIDLIDENLIVNDLYKKIVSNEV IVKNKRNSIIKIQRNMGKGVKTETMYFNKRSSNSFLRIYDKKIQQIDTKGIDYNTAINCN DWTRFECELKHEYAHDMTYKIVECGSEQEFLELLVRVFCDCFKFKEIVDYNGDEGILDDT DFYMNIKGLADNHSKILTSPVRKPLTDFEEKYMNLFENGTMSYFEMFRRAYGDDELDKLF EQIKSDLKTDKVKINDKHIKLVEQNKTAPPFYEL >gi|224999934|gb|ACJC01000066.1| GENE 2 1539 - 2153 565 204 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241838|ref|ZP_04796283.1| ## NR: gi|242241838|ref|ZP_04796283.1| hypothetical protein HMPREF0791_0364 [Staphylococcus epidermidis W23144] # 1 204 1 204 204 266 100.0 5e-70 MQTINYFTDDWVTIREIYEVILEDKTKYSTIDKLVREIEKYQDNELINKGEKVEKNNKNR KLVNIKGLDMILEKIIGIDINNIKEEKEDGIVTYHLDNYKIMRNIEKELQKYTSNIDDIN LENIRENINNLENYYKMIIKNKEKHIRDLDNRFLIELTALEDQYDHEKEILNLKLDNLTE LLKSSRELNEAYKKERDYFKNLNE >gi|224999934|gb|ACJC01000066.1| GENE 3 2295 - 2604 340 103 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241839|ref|ZP_04796284.1| ## NR: gi|242241839|ref|ZP_04796284.1| hypothetical protein HMPREF0791_0365 [Staphylococcus epidermidis W23144] # 1 103 1 103 103 169 100.0 5e-41 MEELKELTPIENDNYRIQQLTVHFQDLINKFDELKDMIISENNNGYIHIVAMRNFERLLK EFESLSESSLKGVYQIKMESDRDLRDCKQAYYEDNFDANMYIK Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:41 2011 Seq name: gi|224999933|gb|ACJC01000067.1| Staphylococcus epidermidis W23144 contig00106, whole genome shotgun sequence Length of sequence - 250 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:41 2011 Seq name: gi|224999932|gb|ACJC01000068.1| Staphylococcus epidermidis W23144 contig00107, whole genome shotgun sequence Length of sequence - 990 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 671 646 ## SAR0033 kanamycin nucleotidyltransferase (EC:2.7.7.-) - Prom 805 - 864 6.3 Predicted protein(s) >gi|224999932|gb|ACJC01000068.1| GENE 1 2 - 671 646 223 aa, chain - ## HITS:1 COG:no KEGG:SAR0033 NR:ns ## KEGG: SAR0033 # Name: knt, kan # Def: kanamycin nucleotidyltransferase (EC:2.7.7.-) # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 223 10 232 256 453 100.0 1e-126 MTREERMKIVHEIKERILDKYGDDVKAIGVYGSLGRQTDGPYSDIEMMCVMSTEEAEFSH EWTTGEWKVEVNFDSEEILLDYASQVESDWPLTHGQFFSILPIYDSGGYLEKVYQTAKSV EAQTFHDAICALIVEELFEYAGKWRNIRVQGPTTFLPSLTVQVAMAGAMLIGLHHRICYT TSASVLTEAVKQSDLPSGYDHLCQFVMSGQLSDSEKLLESLEN Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:46 2011 Seq name: gi|224999931|gb|ACJC01000069.1| Staphylococcus epidermidis W23144 contig00108, whole genome shotgun sequence Length of sequence - 1188 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 18 - 287 295 ## gi|242241843|ref|ZP_04796288.1| hypothetical protein HMPREF0791_0369 - Prom 317 - 376 8.6 - Term 469 - 518 3.1 2 2 Tu 1 . - CDS 615 - 938 124 ## gi|242241844|ref|ZP_04796289.1| hypothetical protein HMPREF0791_0370 - Prom 1066 - 1125 4.2 Predicted protein(s) >gi|224999931|gb|ACJC01000069.1| GENE 1 18 - 287 295 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241843|ref|ZP_04796288.1| ## NR: gi|242241843|ref|ZP_04796288.1| hypothetical protein HMPREF0791_0369 [Staphylococcus epidermidis W23144] # 1 89 1 89 89 154 100.0 1e-36 MVKIVPEYELDYFDWLVRQRLINFPAMPVKGEWKQESYGYDNISFDNENEYQELVIDTEK TYPEFDFYEKALESISLVNLDDFHKKTKD >gi|224999931|gb|ACJC01000069.1| GENE 2 615 - 938 124 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241844|ref|ZP_04796289.1| ## NR: gi|242241844|ref|ZP_04796289.1| hypothetical protein HMPREF0791_0370 [Staphylococcus epidermidis W23144] # 1 107 1 107 107 147 100.0 3e-34 MENDFRRQNEKQEQSRYTEYADGIEVDWDVVKHNTEQFINQRTRETKQAITKLHRGDKQE SEMQNLSSKLKETMTVIQYNNIKVHNDFVHILRDTLNDVETKKFKMK Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:57 2011 Seq name: gi|224999930|gb|ACJC01000070.1| Staphylococcus epidermidis W23144 contig00109, whole genome shotgun sequence Length of sequence - 1956 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 222 350 ## COG4842 Uncharacterized protein conserved in bacteria - Prom 325 - 384 8.3 + Prom 324 - 383 8.6 2 2 Tu 1 . + CDS 465 - 1424 880 ## COG3942 Surface antigen + Term 1620 - 1662 0.1 Predicted protein(s) >gi|224999930|gb|ACJC01000070.1| GENE 1 3 - 222 350 73 aa, chain - ## HITS:1 COG:SA0271 KEGG:ns NR:ns ## COG: SA0271 COG4842 # Protein_GI_number: 15925984 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 73 1 73 97 98 95.0 4e-21 MAMIKMSPEEIRAKSQSYGQGSEQIHQILADLTRAQGEIAANWEGQAFSRFEEQFQQLSP KVEKFAQLLEEIK >gi|224999930|gb|ACJC01000070.1| GENE 2 465 - 1424 880 319 aa, chain + ## HITS:1 COG:SA0270 KEGG:ns NR:ns ## COG: SA0270 COG3942 # Protein_GI_number: 15925983 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 21 319 21 297 297 274 54.0 1e-73 MKKILLTSISSITLLSGLTLTTNTYAANYSNIDEARKEHPNADFKVNKKDGTFSYTYDNR NTQSSLNKKKQEYQPSNNQINHYPSQNNSVQLSPYNNQVSNLSQNHQSNNQLSETPDPQN NRNDQGDILNETDTPQPVIPPTSDDMKDNYQSDTKKNAYQKDKHGMITTIDMDELYDELQ IAEFNDKAKTNDGKPLAIGNGKIVDQPIFTDKNNLYTAGQCTWYVFDKRAQDGHTISTFW GDARNWAGQASSAGFKVDHSPKEGSIMQTTNGPYGHVAYVERVNKDGSIFISEMNWIAPY IVSTRTISASEVDSYTFIH Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:58 2011 Seq name: gi|224999929|gb|ACJC01000071.1| Staphylococcus epidermidis W23144 contig00111, whole genome shotgun sequence Length of sequence - 789 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 114 - 788 470 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs Predicted protein(s) >gi|224999929|gb|ACJC01000071.1| GENE 1 114 - 788 470 224 aa, chain - ## HITS:1 COG:BH0432 KEGG:ns NR:ns ## COG: BH0432 COG1167 # Protein_GI_number: 15612995 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Bacillus halodurans # 1 222 257 480 482 218 43.0 8e-57 YCIPTLHNPTQNTYTKEEKQKIIDQCQKNGIPIVEDSIYSDLWFDEKRPMPMKSLKNSDN VLYLGSLSKTVSPGLRIGWIVADKNVINHLSDLKMQNDYGASSISQYIATKWLNTYHEKH ISELKLELKKRKDIFIDALKTHLSMYGSWNDPSGSFYIWFEFSISINVKKLFNESIKENI LIQPGEIYDSNYKNYIRFSYSYIDENDINRSLKKLSNIIKKIRN Prediction of potential genes in microbial genomes Time: Sun May 29 07:29:59 2011 Seq name: gi|224999928|gb|ACJC01000072.1| Staphylococcus epidermidis W23144 contig00112, whole genome shotgun sequence Length of sequence - 3292 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 153 - 205 8.9 1 1 Tu 1 . - CDS 232 - 1596 824 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs - Prom 1637 - 1696 7.4 + Prom 1505 - 1564 6.7 2 2 Op 1 16/0.000 + CDS 1693 - 2580 1346 ## COG0214 Pyridoxine biosynthesis enzyme 3 2 Op 2 . + CDS 2580 - 3140 652 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis + Term 3220 - 3261 -0.9 Predicted protein(s) >gi|224999928|gb|ACJC01000072.1| GENE 1 232 - 1596 824 454 aa, chain - ## HITS:1 COG:SA0476 KEGG:ns NR:ns ## COG: SA0476 COG1167 # Protein_GI_number: 15926195 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Staphylococcus aureus N315 # 7 454 5 459 460 533 60.0 1e-151 MKVNQPLYLSLYEKLKNQIIEGQYQSNDRFPSKRQLSNYLSVSHTTIEHAYQLLVDEGFI YSKPRSGYFVSDIESLPVIHRQTNQLNTDNLEKKQRQYKYAFNLSEIDSESFPMHIFRKY AKDVFEDHQLSLLQRGERQGEYILRQQISHYLFNSRGVTCHPNQIIVGSSTSQLLDMITN LLKKEEFIIEQPSYPPIKHTLDKKGISYIQVPVEQNGIQIDPILNTNNNILYITPSHQFP TGYVTNLKKRTQLINWSHQAKQRYIIEDDYDSEFRYFGKPIPALQSLDTKGKVIYISTFS KSLYPSCRIAYIVLPQNLMHKYNNQKYKEGNTVPVHVQHMIAQFMISGKFERHLNKMRKI YRDKLDYILKRLKPYNTQIKIEGALTGMHFTITVNNGLSMKQCLKNAKKNNLKLKPYHYE NYSKVYPKFILGFGGIKKEELEDHVNALIHSLVI >gi|224999928|gb|ACJC01000072.1| GENE 2 1693 - 2580 1346 295 aa, chain + ## HITS:1 COG:SA0477 KEGG:ns NR:ns ## COG: SA0477 COG0214 # Protein_GI_number: 15926196 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 295 1 295 295 535 97.0 1e-152 MSKIVGSDRVKRGMAEMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVA RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLESMGVDYIDESEVLTPADEEYHLRKD QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRRVNSEVSRLTVMND DEIMTFAKDLGAPYEVLKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF KSEDPEKFAKAIVQATTHYQDYELIGKLASELGTAMKGLDINQISLEERMQERGW >gi|224999928|gb|ACJC01000072.1| GENE 3 2580 - 3140 652 186 aa, chain + ## HITS:1 COG:SA0478 KEGG:ns NR:ns ## COG: SA0478 COG0311 # Protein_GI_number: 15926197 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Staphylococcus aureus N315 # 2 185 1 184 186 295 80.0 4e-80 MIKIGVLALQGAVREHIRHIELSGYEGIAIKRVEQLDEIDGLILPGGESTTLRRLMDLYG FKEKLQQLDLPMFGTCAGLIVLAKNVENESGYLNKLDITVERNSFGRQVDSFESELDIKG IANDIEGVFIRAPHIAKVDNGVEILSKVGGKIVAVKQGQYLGVSFHPELTDDYRITKYFI EHMIKH Prediction of potential genes in microbial genomes Time: Sun May 29 07:30:24 2011 Seq name: gi|224999927|gb|ACJC01000073.1| Staphylococcus epidermidis W23144 contig00113, whole genome shotgun sequence Length of sequence - 68785 bp Number of predicted genes - 66, with homology - 66 Number of transcription units - 30, operones - 14 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 101 - 140 3.0 1 1 Tu 1 . - CDS 156 - 1370 1371 ## COG1972 Nucleoside permease - Prom 1439 - 1498 5.8 + Prom 1440 - 1499 5.3 2 2 Op 1 5/0.000 + CDS 1527 - 1988 372 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 3 2 Op 2 7/0.000 + CDS 2009 - 2572 257 ## PROTEIN SUPPORTED gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 4 2 Op 3 5/0.000 + CDS 2565 - 3569 984 ## COG3869 Arginine kinase 5 2 Op 4 6/0.000 + CDS 3583 - 6036 2897 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 6219 - 6257 8.6 6 2 Op 5 2/0.000 + CDS 6527 - 7900 1590 ## COG1066 Predicted ATP-dependent serine protease 7 2 Op 6 1/0.600 + CDS 7936 - 9012 981 ## COG4956 Integral membrane protein (PIN domain superfamily) + Term 9083 - 9132 -0.2 + Prom 9302 - 9361 8.7 8 3 Tu 1 . + CDS 9422 - 10876 1696 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases + Term 11120 - 11168 12.3 + Prom 11004 - 11063 6.5 9 4 Op 1 4/0.000 + CDS 11279 - 11890 730 ## COG1045 Serine acetyltransferase 10 4 Op 2 8/0.000 + CDS 11874 - 13274 1424 ## COG0215 Cysteinyl-tRNA synthetase 11 4 Op 3 7/0.000 + CDS 13279 - 13665 269 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 12 4 Op 4 6/0.000 + CDS 13655 - 14422 655 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 13 4 Op 5 5/0.000 + CDS 14419 - 14946 539 ## COG3688 Predicted RNA-binding protein containing a PIN domain 14 4 Op 6 1/0.600 + CDS 15016 - 15591 292 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog + Prom 15628 - 15687 4.8 15 5 Op 1 . + CDS 15715 - 15858 261 ## PROTEIN SUPPORTED gi|27467215|ref|NP_763852.1| 50S ribosomal protein L33 16 5 Op 2 46/0.000 + CDS 15921 - 16103 265 ## COG0690 Preprotein translocase subunit SecE 17 5 Op 3 45/0.000 + CDS 16114 - 16662 751 ## COG0250 Transcription antiterminator + Term 16669 - 16725 -0.8 + Prom 16835 - 16894 7.5 18 5 Op 4 55/0.000 + CDS 16994 - 17416 695 ## PROTEIN SUPPORTED gi|27467218|ref|NP_763855.1| 50S ribosomal protein L11 + Term 17514 - 17555 4.1 + Prom 17418 - 17477 4.7 19 5 Op 5 43/0.000 + CDS 17629 - 18324 1161 ## PROTEIN SUPPORTED gi|27467219|ref|NP_763856.1| 50S ribosomal protein L1 + Term 18328 - 18397 2.5 + Prom 18358 - 18417 7.9 20 6 Op 1 47/0.000 + CDS 18599 - 19099 801 ## PROTEIN SUPPORTED gi|27467221|ref|NP_763858.1| 50S ribosomal protein L10 21 6 Op 2 3/0.000 + CDS 19137 - 19505 581 ## PROTEIN SUPPORTED gi|27467222|ref|NP_763859.1| 50S ribosomal protein L7/L12 + Term 19529 - 19566 -0.4 22 6 Op 3 3/0.000 + CDS 19571 - 20305 678 ## COG2813 16S RNA G1207 methylase RsmC + Term 20411 - 20455 2.0 + Prom 20328 - 20387 7.6 23 6 Op 4 58/0.000 + CDS 20521 - 24072 4155 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit + Term 24100 - 24141 4.7 + Prom 24094 - 24153 1.7 24 6 Op 5 4/0.000 + CDS 24204 - 27827 3804 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit + Term 27901 - 27952 4.5 + Prom 28062 - 28121 7.3 25 7 Op 1 4/0.000 + CDS 28155 - 28415 419 ## PROTEIN SUPPORTED gi|27467226|ref|NP_763863.1| putative ribosomal protein L7Ae-like 26 7 Op 2 56/0.000 + CDS 28470 - 28919 770 ## PROTEIN SUPPORTED gi|242241878|ref|ZP_04796323.1| 30S ribosomal protein S12 27 7 Op 3 51/0.000 + CDS 28990 - 29460 801 ## PROTEIN SUPPORTED gi|15923536|ref|NP_371070.1| 30S ribosomal protein S7 + Prom 29492 - 29551 2.1 28 7 Op 4 30/0.000 + CDS 29580 - 31661 2722 ## COG0480 Translation elongation factors (GTPases) + Term 31702 - 31736 0.2 + Prom 31740 - 31799 4.6 29 7 Op 5 . + CDS 31880 - 33064 1447 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 + Term 33077 - 33121 12.1 - Term 33056 - 33115 11.1 30 8 Tu 1 . - CDS 33189 - 34376 1037 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Prom 34400 - 34459 6.5 + Prom 34802 - 34861 8.4 31 9 Tu 1 . + CDS 34890 - 35399 190 ## PROTEIN SUPPORTED gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 + Prom 35571 - 35630 7.1 32 10 Op 1 . + CDS 35653 - 35916 378 ## SERP0192 ornithine cyclodeaminase (EC:4.3.1.12) 33 10 Op 2 . + CDS 35940 - 36602 620 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog + Term 36620 - 36669 2.4 - Term 36613 - 36652 1.5 34 11 Tu 1 . - CDS 36690 - 36899 152 ## SERP0193 hypothetical protein - Prom 37129 - 37188 10.3 + Prom 37034 - 37093 8.0 35 12 Tu 1 . + CDS 37160 - 38116 1158 ## COG0451 Nucleoside-diphosphate-sugar epimerases + Term 38213 - 38250 -0.4 + Prom 38478 - 38537 8.4 36 13 Tu 1 . + CDS 38575 - 39651 1352 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Term 39706 - 39746 1.6 + Prom 39759 - 39818 12.8 37 14 Op 1 3/0.000 + CDS 39923 - 40639 188 ## PROTEIN SUPPORTED gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 38 14 Op 2 1/0.600 + CDS 40632 - 41663 862 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases 39 14 Op 3 . + CDS 41680 - 43374 976 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Prom 43633 - 43692 12.3 40 15 Tu 1 . + CDS 43743 - 44438 700 ## COG0546 Predicted phosphatases + Term 44457 - 44505 13.2 - Term 44445 - 44492 4.1 41 16 Op 1 5/0.000 - CDS 44528 - 45832 1168 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 42 16 Op 2 . - CDS 45881 - 46633 188 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 43 17 Op 1 3/0.000 - CDS 46989 - 47651 559 ## COG1428 Deoxynucleoside kinases 44 17 Op 2 . - CDS 47644 - 48306 671 ## COG1428 Deoxynucleoside kinases - Prom 48333 - 48392 7.0 + Prom 48070 - 48129 9.6 45 18 Tu 1 . + CDS 48328 - 48834 441 ## COG0590 Cytosine/adenosine deaminases + Prom 48840 - 48899 5.4 46 19 Op 1 1/0.600 + CDS 49002 - 49880 986 ## COG0561 Predicted hydrolases of the HAD superfamily 47 19 Op 2 . + CDS 49885 - 50451 629 ## COG0431 Predicted flavoprotein + Term 50497 - 50543 11.4 + Prom 50846 - 50905 6.3 48 20 Tu 1 . + CDS 51012 - 53798 3675 ## SERP0207 SdrG protein + Term 54022 - 54070 10.9 49 21 Tu 1 . - CDS 53348 - 53647 169 ## PROTEIN SUPPORTED gi|161833643|ref|YP_001597839.1| putative ribosomal protein S1 - Prom 53769 - 53828 7.4 - Term 54088 - 54138 11.2 50 22 Tu 1 . - CDS 54163 - 55665 1208 ## COG0438 Glycosyltransferase - Prom 55718 - 55777 6.9 - Term 55860 - 55895 0.4 51 23 Op 1 3/0.000 - CDS 56036 - 56434 419 ## COG0394 Protein-tyrosine-phosphatase 52 23 Op 2 7/0.000 - CDS 56450 - 57742 1272 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 53 23 Op 3 1/0.600 - CDS 57739 - 58056 225 ## COG0640 Predicted transcriptional regulators - Prom 58116 - 58175 6.6 - Term 58127 - 58181 12.1 54 24 Op 1 1/0.600 - CDS 58200 - 59078 1061 ## COG1469 Uncharacterized conserved protein 55 24 Op 2 . - CDS 59092 - 59757 776 ## COG2120 Uncharacterized proteins, LmbE homologs 56 24 Op 3 . - CDS 59773 - 60132 370 ## SERP0214 hypothetical protein - Prom 60336 - 60395 6.3 + Prom 60293 - 60352 6.3 57 25 Tu 1 1/0.600 + CDS 60420 - 61151 631 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase + Prom 61163 - 61222 5.8 58 26 Op 1 4/0.000 + CDS 61261 - 61893 897 ## COG0269 3-hexulose-6-phosphate synthase and related proteins 59 26 Op 2 1/0.600 + CDS 61895 - 62443 768 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation + Term 62455 - 62505 11.4 + Prom 62480 - 62539 5.8 60 27 Tu 1 . + CDS 62564 - 63211 466 ## COG0546 Predicted phosphatases + Prom 63235 - 63294 9.1 61 28 Op 1 8/0.000 + CDS 63341 - 64690 1061 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 62 28 Op 2 . + CDS 64693 - 65841 1213 ## COG0183 Acetyl-CoA acetyltransferase 63 28 Op 3 . + CDS 65807 - 66169 328 ## SE0347 hypothetical protein 64 28 Op 4 . + CDS 66173 - 66433 268 ## SERP0222 hypothetical protein + Prom 66466 - 66525 8.7 65 29 Tu 1 . + CDS 66620 - 68041 1201 ## COG0477 Permeases of the major facilitator superfamily + Term 68170 - 68201 -0.7 66 30 Tu 1 . - CDS 68334 - 68513 91 ## SERP0224 hypothetical protein - Prom 68542 - 68601 4.6 Predicted protein(s) >gi|224999927|gb|ACJC01000073.1| GENE 1 156 - 1370 1371 404 aa, chain - ## HITS:1 COG:SA0479 KEGG:ns NR:ns ## COG: SA0479 COG1972 # Protein_GI_number: 15926198 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 1 404 1 404 404 598 88.0 1e-171 MHIVIGILGIIFFLALAVLFSSDRKNIRWRYVGLLLVIQLIFAFILLKTNLGISVIGSIS DGFNYLLAKAAVGVNFVFGGFKFIDPKQPPFFFSVLLPIVFISALIGILQYTRILPLIIN LLGFLISKINGMGRLESYNAVAAAILGQSEVFISLKKQLPYIPKQRLYTLTASAMSTVSA SIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKVNEEDDKLLIDENETKKQSFFEM LGEYILDGFKVAVIVGAMLIGYIAIIALLNGMVSGILSFMSGGAIQWNFQTLIGFIFAPF AFLTGIPWQDAVQSGSVMATKLLSNEFVAMQDLGKATGLSEHAKGITSVFLVSFANFSSI GIISGAIKSLNDEKGDVVARFGIKLLFGATLVSFISAAIAGFFI >gi|224999927|gb|ACJC01000073.1| GENE 2 1527 - 1988 372 153 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 1 152 1 152 158 147 44 1e-34 MHNMSDIIEQYIKRLFEEADEDVVEIQRAHIAQRFDCVPSQLNYVIKTRFTNEHGYEIES KRGGGGYIRITKIENKDATGYINHLLQLIGPSISQQQGYYVIDGLLDKGLINEREAKMIQ TIIDRETLKMDVVARDIIRANILKRLLPVINYY >gi|224999927|gb|ACJC01000073.1| GENE 3 2009 - 2572 257 187 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 [Bacillus selenitireducens MLS10] # 1 187 1 179 179 103 31 3e-21 MLCENCHFNEAEVKLTVKGIDSTHEKWVCSVCAQGENPWLHSNDDNTYHTHQDDIEEAFV VKQILQHLAAKHGINFHEMAFKEEKKCPTCQMTLKDIAHVGKLGCADCYATFKEDIIDIV QRVQGGQFEHVGKTPQSSYKKLAIKKQIEEKSKYLNKLIDGQEFEEAAIVRDEIKALKSE SEVSHDE >gi|224999927|gb|ACJC01000073.1| GENE 4 2565 - 3569 984 334 aa, chain + ## HITS:1 COG:SA0482 KEGG:ns NR:ns ## COG: SA0482 COG3869 # Protein_GI_number: 15926201 # Func_class: E Amino acid transport and metabolism # Function: Arginine kinase # Organism: Staphylococcus aureus N315 # 3 334 4 335 335 510 79.0 1e-144 MSNIHTNISEWMKMSEETPVIISSRIRLARNLENHVHPLMFPSEQEGYRVINEVQDALSN LTLNRLDTMDQQSKMKLVAKHLVSPELVKQPASAVMLNDDESVSVMINEEDHIRIQALGT DLSLKDLYQRASKIDDELDKALDISYDEHLGYLTTCPTNIGTGMRASVMLHLPGLSIMKR MNRIAQTINRFGFTIRGIYGEGSQVYGHIYQVSNQLTLGKTEEDIIDNLTEVVNQIINEE KQIRERLDKHNSVETLDRVYRSLGVLQNSRIISMEEASYRLSEVKLGIDLNYILLENFKF NELMVAIQSPFLIDDDDNRTVNEKRADLLREHIK >gi|224999927|gb|ACJC01000073.1| GENE 5 3583 - 6036 2897 817 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 801 1 807 815 1120 69 0.0 MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLVSFNITEDKV IEEVEKLIGHGQEQMGTLHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVA ARVFANLDLNITKARAQVVKALGSPEMSNKNAQANKSNNTPTLDGLARDLTVIAKDGTLD PVVGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVKNEVPETLKDKRVM SLDMGTVVAGTKYRGEFEERLKKVMEEIHQAGNVILFIDELHTLVGAGGAEGAIDASNIL KPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPTVEDTIEILKGLRDRYEA HHRINISDEALEAAAKLSDRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEI DKVKNEKDAAVHAQEFENAANLRDKQSKLEKQYEDAKNEWKNAQGGLDTALSEENIAEVI AGWTGIPLTKINETESDRLLNLEDTLHKRVIGQNDAVNSISKAVRRARAGLKDPKRPIGS FIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGG QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNV GAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELK EIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSEL ILDGNKIEGKEVTIDHDGKEFKYDIYEITAKKETTES >gi|224999927|gb|ACJC01000073.1| GENE 6 6527 - 7900 1590 457 aa, chain + ## HITS:1 COG:SA0484 KEGG:ns NR:ns ## COG: SA0484 COG1066 # Protein_GI_number: 15926203 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Staphylococcus aureus N315 # 1 454 1 454 454 840 92.0 0 MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKVAHPKHGVKTKETAGKVQKLN SVKHEATPRLLTESKEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICAALSQNKNVLY ITGEESINQTKLRADRLEEDSSHLNVLAETDLEVIHQTVKEERPDLLVVDSIQTIYHPEI SSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVLNPSEMFLEERSTNVPGSTIVPTMEGT RPLLIEVQALVTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVK LTEPAVDLSIIVATASSFKDQAVDGLDCFVGEVGLTGEVRRVSRIEQRVQEATKLGFKRA IIPQTNIGGWTFPEGIQVVGVSSVHEALKYALHSKQR >gi|224999927|gb|ACJC01000073.1| GENE 7 7936 - 9012 981 358 aa, chain + ## HITS:1 COG:SA0485 KEGG:ns NR:ns ## COG: SA0485 COG4956 # Protein_GI_number: 15926204 # Func_class: R General function prediction only # Function: Integral membrane protein (PIN domain superfamily) # Organism: Staphylococcus aureus N315 # 7 358 1 352 357 528 77.0 1e-150 MEGGYKLNITKAIVVAIYIIVGAALGVIIIPEVVTDLGIHHHAVITNYYVDGFIGIIIFF IIFGLFINKVTYAFKQFEQLIMRRSAVEILFATIGLIIGLFISVMVSFILEMIGNSILNH FVPMIITIILCYLGFQFGLKKRDEMLMFLPENMARSMSNNIRRATPKIVDTSAIIDGRIL DIIRCGFIDGDILIPQGVINELQVIADAKDSVKREKGQRGLDILNQLYDLDYPTRVIHPT QSHSDIDTLLIKLAQQYHAHVITTDFNLNKVCHVQGITALNVNDLSEAIKPNVHQGDQLS ILLTKIGKEPGQGVGYLDDGTMVVVDNAKSYIGQQVNLEVVSLLQTSSGRIVFAKFVD >gi|224999927|gb|ACJC01000073.1| GENE 8 9422 - 10876 1696 484 aa, chain + ## HITS:1 COG:SA0486 KEGG:ns NR:ns ## COG: SA0486 COG0008 # Protein_GI_number: 15926205 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Staphylococcus aureus N315 # 1 481 1 481 484 843 89.0 0 MSERIRVRYAPSPTGYLHIGNARTALFNYLFAKHYNGDFVVRIEDTDSKRNLEDGESSQF DNLKWLGLDWDESVDKDKGFGPYRQSERAEIYNPLIQQLLEEDKAYKCYMTEEELEAERE AQIARGEMPRYGGQHAHLTEEQRQQYEAEGRKPSIRFRVPKDQTYTFNDMVKGEISFESD NIGDWVIVKKDGVPTYNFAVAVDDHYMQISDVIRGDDHVSNTPKQLMIYEAFGWEAPRFG HMSLIVNEERKKLSKRDGQILQFIEQYRDLGYLPEALFNFITLLGWSPEGEEEIFSKEEF IKIFDEKRLSKSPAMFDRQKLAWVNNQYMKTKDTETVFELALPHLIKANLIPENPSEKDR EWGRKLIALYQKEMSYAGEIVPLSEMFFHEMPELGKDEQEVLQGEQVPELMNHLYGKLES LESFEATEIKKMIKEVQKETGIKGKQLFMPIRVAVTGQMHGPELPNTIEVLGKDKVLSRL KNLV >gi|224999927|gb|ACJC01000073.1| GENE 9 11279 - 11890 730 203 aa, chain + ## HITS:1 COG:SA0487 KEGG:ns NR:ns ## COG: SA0487 COG1045 # Protein_GI_number: 15926206 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Staphylococcus aureus N315 # 1 203 11 213 213 374 91.0 1e-104 MVFEQDPAARSTLEVITTYAGLHAVWSHLIAHKLYKNRRYVAARMISQLSRFFTGIEIHP GAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKEKGKRHPDIGDNVLIAAGS KILGNIKIESNVNIGANSVVLQSVPSYTTVVGIPGHIVKQEGRRIGKTFDHRNLPDPLYE QIKHLERQLEKAKNGEIQDDYII >gi|224999927|gb|ACJC01000073.1| GENE 10 11874 - 13274 1424 466 aa, chain + ## HITS:1 COG:SA0488 KEGG:ns NR:ns ## COG: SA0488 COG0215 # Protein_GI_number: 15926207 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 466 1 466 466 837 87.0 0 MITLYNTLTRRKETFEPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYE VIYVSNFTDVDDKLINRSKELNESVPEIAEKYIKAFYEDVGALNVKKATSNPRVMHHMGE IIDFIKELVDEGYAYESDGDVYFRTRQFDGYGKLSHQSLDDLKVGARIEAGEQKEDALDF TLWKKAKPGEISWNSPFGKGRPGWHIECSVMAYHELGSTIDIHAGGSDLQFPHHENEIAQ SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEVDPDVLRFFMISVHYRSP INYNLELVGAARSGLERIRNSYKLIEEREQIASDLEEQSEYIQQIDKILNQFETVMDDDF NTANAVTAWYDLAKLANKYVLENTTSTKVLNRFKEVYSIFSDVLGVPLKSKETEELLDED IEQLIEERNEARKNKDFARADEIRDMLKARHIILEDTPQGVRFKRG >gi|224999927|gb|ACJC01000073.1| GENE 11 13279 - 13665 269 128 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 6 122 13 129 141 108 48 1e-22 MNVKLLNPLTLAYMGDAVLDQHVREYIVLKLQSKPHRLHQVSKSYVSAKSQAKTLEYLLD IDWFTEEELSVLKRGRNAKSYTKAKNTDIQTYRKSSALEAVIGFLYLDHQSERLENLLET IVRIVDER >gi|224999927|gb|ACJC01000073.1| GENE 12 13655 - 14422 655 255 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 12 251 9 249 255 256 54 2e-67 MKGSVNVEDIVIVGRHAVKEAIISGHAINKILIQDGIKKQQINDILKNAKSQKLIVQTVP KSKLDFLANAPHQGVAALVAPYEYANFDEFLQKQKKKARYSTVIILDGLEDPHNLGSILR TADASGVDAVIIPKRRSVALTQTVAKASTGAIQHVPVIRVTNLSKTIDELKDNGFWIAGT EANNATDYRDLQADMSLGIVIGSEGQGMSRLVSDKCDFHIKIPMVGHVNSLNASVAASLM MYEVYRKRHQLEEKS >gi|224999927|gb|ACJC01000073.1| GENE 13 14419 - 14946 539 175 aa, chain + ## HITS:1 COG:SA0491 KEGG:ns NR:ns ## COG: SA0491 COG3688 # Protein_GI_number: 15926210 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Staphylococcus aureus N315 # 1 174 1 174 174 276 84.0 1e-74 MKKRYLIIDGYNMIGQSSTLSTVAKENLEEAREQLLDTIANYNALIADEIVCVFDAYEQS GIEREYFYHGVKTIFTKEKETADSFIERYVYELYNKHTTHITVVTSDMSEQHAIFGSGAY RISSREMWRELKENEVVVNKSLDDFSEKKPRIRIPLSNEILEEFEKIRRGNQKKD >gi|224999927|gb|ACJC01000073.1| GENE 14 15016 - 15591 292 191 aa, chain + ## HITS:1 COG:SA0492 KEGG:ns NR:ns ## COG: SA0492 COG1595 # Protein_GI_number: 15926211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Staphylococcus aureus N315 # 20 191 16 187 189 119 43.0 3e-27 MNLNKQQHEYTALCLSQTENKSSEELFESLIEELKPLIYNKIRYISHNKYDIEDMYQEIV IKFYRALQKFDYQQGVPIEHYIYFLIRSVKYDYLRKVKANYKRQPLLVNEYIVEYNATLA LNDIERSIIRKELTLAFKRSEVKLSRMERRIIRLLLNDYKPKEIAMVLNLESKVVYNAIQ RSKCKLKRSFE >gi|224999927|gb|ACJC01000073.1| GENE 15 15715 - 15858 261 47 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467215|ref|NP_763852.1| 50S ribosomal protein L33 [Staphylococcus epidermidis ATCC 12228] # 1 47 1 47 47 105 97 9e-22 MKKVPLNCENCGNRNYNVPKKEGSATRLTLKKYCPRCNAHTVHKESK >gi|224999927|gb|ACJC01000073.1| GENE 16 15921 - 16103 265 60 aa, chain + ## HITS:1 COG:SA0493 KEGG:ns NR:ns ## COG: SA0493 COG0690 # Protein_GI_number: 15926212 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Staphylococcus aureus N315 # 1 60 1 60 60 85 90.0 2e-17 MAKKESFFKGVKSEMEKTSWPTKEELFKYTIIVVSTVIFFLVFFYALDIGINALKQLFLG >gi|224999927|gb|ACJC01000073.1| GENE 17 16114 - 16662 751 182 aa, chain + ## HITS:1 COG:SA0494 KEGG:ns NR:ns ## COG: SA0494 COG0250 # Protein_GI_number: 15926213 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Staphylococcus aureus N315 # 1 182 1 182 182 315 96.0 3e-86 MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKK LVKKTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMGL KEKTIDVELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIE KL >gi|224999927|gb|ACJC01000073.1| GENE 18 16994 - 17416 695 140 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467218|ref|NP_763855.1| 50S ribosomal protein L11 [Staphylococcus epidermidis ATCC 12228] # 1 140 1 140 140 272 99 4e-72 MAKKVEKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQEQAGLIIPVEISV YEDRSFTFITKTPPAPVLLKKAAGVEKGSGEPNKTKVATVTKDQVREIAQTKMQDLNAAD EEAAMRIIEGTARSMGITVQ >gi|224999927|gb|ACJC01000073.1| GENE 19 17629 - 18324 1161 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467219|ref|NP_763856.1| 50S ribosomal protein L1 [Staphylococcus epidermidis ATCC 12228] # 1 231 1 231 231 451 100 1e-126 MAKKGKKYQEAASKVDRTQYYSVEEAIKLAKETSVANFDASVEVAFRLGIDTRKNDQQIR GAVVLPHGTGKSQRVLVFAKGDKITEAEEAGADYVGEADYVQKIQQGWFDFDVVVATPDM MGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHASIGKVSF DEEKLVDNFRTLQDVLAKAKPASAKGTYFKSVAVTTTMGPGVKVDTSSFKL >gi|224999927|gb|ACJC01000073.1| GENE 20 18599 - 19099 801 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467221|ref|NP_763858.1| 50S ribosomal protein L10 [Staphylococcus epidermidis ATCC 12228] # 1 166 1 166 166 313 100 2e-84 MSAIIEAKKQQVDTIAEQLKNSVSTVIVDYRGLTVAEVTELRSQLREAGVEYKVYKNTMV RRAAEQAGIEGLDEFLTGPTAIATSTEDVVAPAKVIAGFAKEHEALEVKTGVMEGNVISA EEVKTVGSLPSHDGLVSMLLSVLQAPVRNFAYAVKAVGEQKEESAE >gi|224999927|gb|ACJC01000073.1| GENE 21 19137 - 19505 581 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467222|ref|NP_763859.1| 50S ribosomal protein L7/L12 [Staphylococcus epidermidis ATCC 12228] # 1 122 1 122 122 228 100 7e-59 MANQEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAAAGAAGGGDAAAEKTEFDVEL TSAGSSKIKVVKAVKEATGLGLKDAKELVDGAPKVIKEAMPKEDAEKLKEQLEEVGASVE LK >gi|224999927|gb|ACJC01000073.1| GENE 22 19571 - 20305 678 244 aa, chain + ## HITS:1 COG:SA0499 KEGG:ns NR:ns ## COG: SA0499 COG2813 # Protein_GI_number: 15926219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Staphylococcus aureus N315 # 43 244 1 202 202 297 70.0 1e-80 MQIQPEFFEKLKPRYSNNGVFQLINTSILNAFGLNDKNRGEEMSHYYDEQPDVKSNPKRI SYQIKNAQLELTTDAGVFSKDNVDFGSDLLIKTFLKEHPPGPSKTIADVGCGYGPIGLAI GKVSPHHQITMLDINNRALALAEMNKTKNQVDNVTIIESDCLSAVNHQCFDYILTNPPIR AGKDIVHRIFEQAFDRLKTTGELYVVIQKKQGMPSAKKKIEELFGNVEIIAKSKGYYILK SIKG >gi|224999927|gb|ACJC01000073.1| GENE 23 20521 - 24072 4155 1183 aa, chain + ## HITS:1 COG:SA0500 KEGG:ns NR:ns ## COG: SA0500 COG0085 # Protein_GI_number: 15926220 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Staphylococcus aureus N315 # 1 1183 1 1183 1183 2272 97.0 0 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTG NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT DTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDVV YVRIDRTRKLPLTVLLRALGFSTDQEIVDLLGDSEYLRNTLEKDGTENTEQALLEIYERL RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQKLAEPIVNSETG EIVVDEGTVLDRRKLDEIMDVLETNANSEVFELEGSVIDEPVEIQSIKVYVPNDEEGRTT TVIGNALPDSEVKCITPADIVASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGELLQNQFR IGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG FIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCRFRGNNT VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTG MEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGTEHEGELDRYPLAKFKRSNSG TCYNQRPIVSIGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSESALKNLDDRGIVYVGAEVKDGDI LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPL GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV WALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGL DVKVMDEHDNEIEMADVDDEDAAERKVDLQQKSAPESQKETTD >gi|224999927|gb|ACJC01000073.1| GENE 24 24204 - 27827 3804 1207 aa, chain + ## HITS:1 COG:SA0501 KEGG:ns NR:ns ## COG: SA0501 COG0086 # Protein_GI_number: 15926221 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Staphylococcus aureus N315 # 1 1207 1 1207 1207 2328 95.0 0 MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM SPRALEEVIYFASYVVVDPGPTGLEKKTLLSEAEFREYYDKYPNQFVAKMGAEGIKDLLE EIDLDEELKELRDELESATGQRLTRAIKRLEVVESFRNSGNNPSWMILDVLPIIPPEIRP MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVITEHPVLLNRAPTLHR LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGAIFNDTNEVLKAYANGYVHLHTRIGVH ANSFNNPTFTDEQNSKILATSVGKIIFNEIIPDSFAYINEPSQANLERTTPDKYFVDPTQ LGEGGLKEYFDNTELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI TVGVSDIVVLPDKQDILDEHEKLVERVTKQYNRGLITEDERYNAVVEIWTDAKDQIQGEL MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI EPFIERIEGRYSKETIRHPETDEVIIRPDELITPDIAKQITDAGIEQMYIRSAFTCNTRH GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI QEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASGTSRLKVEIGQ SVERGEVLTEGSIEPKNYLSVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR KVRIIEAGDTKLLPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGITKASLETESFLSA ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDIQYDKATAPVTETS EEVETIE >gi|224999927|gb|ACJC01000073.1| GENE 25 28155 - 28415 419 86 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467226|ref|NP_763863.1| putative ribosomal protein L7Ae-like [Staphylococcus epidermidis ATCC 12228] # 1 86 1 86 86 166 100 4e-40 MSNEKVARFNKQQYVVGLKETLKALKKGQVTSLIIAQDVEVHLLTRVLSYINHKNIPVSF FSSQRALGKYVGINVNATIVALISEN >gi|224999927|gb|ACJC01000073.1| GENE 26 28470 - 28919 770 149 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242241878|ref|ZP_04796323.1| 30S ribosomal protein S12 [Staphylococcus epidermidis W23144] # 1 149 1 149 149 301 99 8e-81 MGLKNEERRTYSMPTINQLVRKPRKSKTKQSDSPALNRGFNSKKKQFTNLNSPQKRGVCT RVGTMTPKKPNSALRKYARVRLSNNIEVNAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY HIVRGALDTSGVDGRRQGRSLYGTKKPKN >gi|224999927|gb|ACJC01000073.1| GENE 27 28990 - 29460 801 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15923536|ref|NP_371070.1| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus Mu50] # 1 156 1 156 156 313 100 2e-84 MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILYSAFDLVEQRSGRDALE VFEEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEDRL ANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW >gi|224999927|gb|ACJC01000073.1| GENE 28 29580 - 31661 2722 693 aa, chain + ## HITS:1 COG:SA0505 KEGG:ns NR:ns ## COG: SA0505 COG0480 # Protein_GI_number: 15926225 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Staphylococcus aureus N315 # 1 693 1 693 693 1278 95.0 0 MARDFSLKNTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRG ITITSAATTAQWQGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW RQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVE MKCFKYTNDLGTEIDEIEIPEDHKERAEEARAQLIEAVAENNDDLMEKYLGDEEISVDEL KDAIRQATTDVEFYPVLCGTAFKNKGVQLMLNAVIDYLPSPLDVKPIIGHRANNPDEEVV AKPDDSAEFAALAFKVMTDPYVGKLTFFRVYSGTLSSGSYVKNSSKDKRERVGRLLQMHA NSRQEIDTVYSGEIAAAVGLKETGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQ DKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMV SYRETFKQPAQVQGKFSRQSGGRGQYGDVHIEFTPNETGGGFEFENAIVGGVVPREYIPS VEQGLKDAMENGVLAGYPLIDVKAKLFDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI LEPMMKVTIEMPEEYMGDIMGDVTARRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRS NTQGRGTYTMYFDHYAEVPKSIAEEIIKKNKGE >gi|224999927|gb|ACJC01000073.1| GENE 29 31880 - 33064 1447 394 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 394 1 407 407 561 68 1e-159 MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDTVAQSYDMIDNAPEEKERG ITINTAHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHI LLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE GDAEYEQKILDLMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVG EEVEIIGMHETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSIT PHTKFKAEVYVLSKDEGGRHTPFFTNYRPQFYFRTTDVTGVVNLPEGTEMVMPGDNVEMT VELIAPIAIEDGTRFSIREGGRTVGSGVVTEIFE >gi|224999927|gb|ACJC01000073.1| GENE 30 33189 - 34376 1037 395 aa, chain - ## HITS:1 COG:SA0507 KEGG:ns NR:ns ## COG: SA0507 COG1473 # Protein_GI_number: 15926227 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 7 395 1 388 391 692 82.0 0 MEEVIHVFDWFQLASNKEKRMVQLRRYLHQYPELSFEEKRTHDFIVNQLSQLACTIETPV GRNGIKATFKGSDSNGPTIALRADFDALPVQELNDVPYRSKNKGCMHACGHDGHTAILLG VAEIVHEHRHLLKGNVVFIFQYGEEIMPGGSQEMIDDGCLQNVDKIYGTHLWSGYPSGTI YSRPGAIMASPDEFSVTIYGKGGHGAKPHETIDPIVIMAEFILSAQKIISRTIDPVKEAV LTFGMIQAGSTDSVIPDTAFCKGTVRTFDTKLQSHVQNKMDKLLQGLSLSNDITYELEYI KGYLPVHNHQQSYDVVKQAANDLHLRFNESDLMMIGEDFSHYLKVRPGAFFLTGCGNKDK GITAPHHNPHFDIDESSLKYAASEFLKILEIENVF >gi|224999927|gb|ACJC01000073.1| GENE 31 34890 - 35399 190 169 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 [Mesoplasma florum L1] # 23 165 26 169 170 77 33 2e-13 MEEIRPITYQDKEAYYYYIQEWYENEEKVIPGNTDIANYNSFNNMVDRLNSSEVDEGFVP TTTLFYFKDSIIIGAVDIRHQLNDKLSNIGGHVGYGVAKSYRGKGYATILLEKALDELKT LNVEVVLMTCNPLNFASQTVMKKCGGYQIESYIKKNGKPVHRYHIPNTK >gi|224999927|gb|ACJC01000073.1| GENE 32 35653 - 35916 378 87 aa, chain + ## HITS:1 COG:no KEGG:SERP0192 NR:ns ## KEGG: SERP0192 # Name: not_defined # Def: ornithine cyclodeaminase (EC:4.3.1.12) # Organism: S.epidermidis_RP62A # Pathway: Arginine and proline metabolism [PATH:ser00330]; Biosynthesis of secondary metabolites [PATH:ser01110] # 1 79 1 79 316 151 98.0 5e-36 MKYIDEQTQAQLLNMNEVILEVEKALQAFSENKTITPLRYVLPFNEQNRYLVMPALSDEL NIVGLKTVSFAPENSKKGKRLLLDRLF >gi|224999927|gb|ACJC01000073.1| GENE 33 35940 - 36602 620 220 aa, chain + ## HITS:1 COG:MA3252 KEGG:ns NR:ns ## COG: MA3252 COG2423 # Protein_GI_number: 20092068 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanosarcina acetivorans str.C2A # 1 219 100 316 326 142 35.0 4e-34 MSILDGGFLTKVRTGAISGVATKYLAKENAKTLSVIGAGVQAEGLIEAILAVRDIENIHI ASRTFEKAENFAQNIRNRFNIKVSVFKSADEAIDSADIVVTATNASQPVYTHSLHPGVHL NAVGSFKPDMQEIPSETMLVANKIVVESMEAALEETGDLKIPQSEGILTKNMLHSELGDI ISGEKVGRETEEEVTVFKSVGLAIVDIIVAQYFYKKLIQS >gi|224999927|gb|ACJC01000073.1| GENE 34 36690 - 36899 152 69 aa, chain - ## HITS:1 COG:no KEGG:SERP0193 NR:ns ## KEGG: SERP0193 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 69 1 69 69 70 91.0 1e-11 MKRSSYIRHQSNLIISMIIFVIFIIVDINVLIYKHQVAPLLLSSISLIIFIMLFVVALFK CITNYKHQS >gi|224999927|gb|ACJC01000073.1| GENE 35 37160 - 38116 1158 318 aa, chain + ## HITS:1 COG:SA0511 KEGG:ns NR:ns ## COG: SA0511 COG0451 # Protein_GI_number: 15926231 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 314 1 314 321 530 80.0 1e-150 MKKIIITGALGQIGTELVIKCRERYGTENVLATDIRKPEPHSPVKDGPFEILDVTDRNRL FETVRYFNADTLMHMAALLSATAEKKPLVAWDLNMGGLINTLEAARRYQLKFFTPSSIGA FGISTPKVNTPQLTIQQPTTMYGINKVTGELLCQYYYVKFGVDTRSVRFPGLISHVKEPG GGTTDYAVDMYFKAVKKGHYTSYINRYTYMDMMYMEDAIDAIIKLMEEDSVKLKTRNGYN LSAMSIEPEMLKQAIQVYYPDFTLDYDIDLERQDIALSWPDSIDTSCAEDEWGFDPKYDL PTMTKVMLEAIEKKQKEC >gi|224999927|gb|ACJC01000073.1| GENE 36 38575 - 39651 1352 358 aa, chain + ## HITS:1 COG:SA0512 KEGG:ns NR:ns ## COG: SA0512 COG0115 # Protein_GI_number: 15926232 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 621 86.0 1e-178 MSEKIKFEKRESLKEKPDTANLGFGQYFTDYMLSVDYDADQGWHDMKIVPYAPFEISPAA QGLHYGQAVFEGLKAYKHNGEVVLFRPDQNFKRINNSLARLEMPEVDEEALLEGLKQLVD VERDWVPEGEGQSLYIRPFVFATEGILGVRSSHQYKLLIILSPSGAYYGGDTLKSTKIYV EDEYVRAVRGGVGFAKVAGNYAASLLAQTNANKLGYDQVLWLDGVEQKYVEEVGSMNIFF VENGKVVTPALNGSILPGITRKSIIQLAEDLGYEVEERRVSIEELFNAYDKGELTEVFGS GTAAVISPVGTLRYEDREIVINNNEPGKITQKLYDTYTGIQSGKLEDKYGWRVEVPKY >gi|224999927|gb|ACJC01000073.1| GENE 37 39923 - 40639 188 238 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764767|ref|ZP_02171821.1| ribosomal protein L15 [Bacillus selenitireducens MLS10] # 4 237 6 229 234 77 26 3e-13 MIYAGILAGGIGSRMGNVPLPKQFLLLQGKPIIIHTVEKFLMYKDFDEIIIATPQKWINY MHDLLNNYRLDDKKIKVIQGGDDRNHTIMNIIESIEQHKKLNDEDIIVTHDAVRPFLTNR IIRENVEYASQYGAVDTVVNAVDTIISSNDAQFISEIPIRSEMYQGQTPQTFKIKELKDS YLSLTQSQKEILTDACKILVELGKPVKLVKGELFNIKITTPYDLKVANSIITGAVDND >gi|224999927|gb|ACJC01000073.1| GENE 38 40632 - 41663 862 343 aa, chain + ## HITS:1 COG:SA0242 KEGG:ns NR:ns ## COG: SA0242 COG1063 # Protein_GI_number: 15925955 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Staphylococcus aureus N315 # 1 343 1 341 341 492 68.0 1e-139 MINQVYQLVSPRQFEATFKTIDLHNHNSKVIVRPLYLSICAADLRYYCGNRDSKILSKKL PMSLIHESVGEIVYDSEHRLKNGTKVVMIPNTPSKSHNIIAENYLTSSHFKSSGYDGFMQ DYIVMKPDRVVTLPQEIDLSVASYTELVTVSVHAIDRFKAKAIPQFESLGIWGDGNLGYI TAVLLKKLYPTTKIIVFGKTLYKLSRFSFVDEIIQIDNIPQHIKIDHAFECVGGKGSQQA IEQIINIINPEGSIALLGVSELSIQVNTRMVLEKGLTIIGSSRSGLKDFEKTIELYRKYP EVLNQLALLKGKEFEINTIEDLITAFEYDISNAWGKTVLKWNI >gi|224999927|gb|ACJC01000073.1| GENE 39 41680 - 43374 976 564 aa, chain + ## HITS:1 COG:SA0243 KEGG:ns NR:ns ## COG: SA0243 COG1887 # Protein_GI_number: 15925956 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Staphylococcus aureus N315 # 2 561 4 564 564 656 58.0 0 MTKQNIFIDDIYWERVQLYVKGHFEGVKPTRNFLLRNLTETKLLNANRVNIQGSTFEARF NIAILEKGNFLSTGNYILINRQEDEYVCQINPKFLNDKKKQMTLEELRDYNSLETQSLQK SYLLKNYGKSFQRYNNKEIKSYVIVPAISQEINEFIFKVQYKSEINKISKLKHLSFILHK ALRKISFNVRDKIYLSIFNISKTVYKNNKNHVLFTSDSRANMSGNFKFIYEEMLKQQLDK KLVIHSIFKPNIANRRSFIDKLKFPYFLGKSKYILVDDYHPMIYKLQFRENQEIVQVWHA VGAFKTVGFSRTGKKGGPFIDSIGHRNYSKAYVSSNNDILYYAEAFGIEEHKVIPTGVPR TDVLFDESYKTRIKQSLETKLPIIKNKKVILFAPTFRGSGHRTAHYPFFKINFARLASYC EEHQATVLFKMHPFVRNKLNIPAIYNKYFLDISNYREVNDVLFITDILISDYSSLIYEFS VFKKPMLFYAFDLEDYIYTRDFYEPYETFVPGKIVKTFDELILALENNDFEFEKVKPFLN KNFKYKDGKSSERLVKDLFNKFFQ >gi|224999927|gb|ACJC01000073.1| GENE 40 43743 - 44438 700 231 aa, chain + ## HITS:1 COG:SA0513 KEGG:ns NR:ns ## COG: SA0513 COG0546 # Protein_GI_number: 15926233 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 1 226 1 226 227 305 67.0 3e-83 MEWILFDKDGTLIEFDSSWEKIGVRLVDQLLETFPVHDKEAAHRQLGIIDKKIKPDSVMG SGSLGEIIESFNGVTGKETSDWTKDTSQELIDSRVPENNWIDGVQETIQALRNEGYHIGI VTSDTKKGVDQFLEETQTRNLFDLVISTETHAEEKPHPKVLDPLFNAFDVKPEKVAIVGD TANDMKTAINAHLGLAIGVLTGVAKKEELYDADVIINSAKDVKQVIEQYGK >gi|224999927|gb|ACJC01000073.1| GENE 41 44528 - 45832 1168 434 aa, chain - ## HITS:1 COG:Cgl0697 KEGG:ns NR:ns ## COG: Cgl0697 COG2141 # Protein_GI_number: 19551947 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 23 427 22 423 438 419 52.0 1e-117 MTNNHFLNIGVLLYGCGHHQAAWRMKDSNIEDIGNISYYQHLAQIAEKGLLDIVFFADNQ AFNASDNTTMPAFWFDPIINLSAIAQVTSHIGLVPTISSTFSNPFTASRQLLSLDYLSHG RVGWNLVTSMTDIEAQNHSLQYLPERHERYKKADEFASVMNQLFTSWSTASYVPDKNNNK IIESKDIKPFYHEGDYFQVRGPHTTPQSPQGKPVSMQAGASKEGIALAAKYADAVYSVSW DIKQARSYKKKLSDAISKTQHPDRKIKIFPGLVTYVGETHEKALSKKAELDQKLPIEDAL KQLSFFVQQDCSDWELDEPVPPLPPAKNFKGPIGRYETVLAIIKDKQPTVRELLGYLSAG GGHLTLIGTPEEIVDEMEQWFNEGVADGFNLMPPSLPHSLEDFVKYIIPELQRRALFKNS YNQSTLRTLLNLDS >gi|224999927|gb|ACJC01000073.1| GENE 42 45881 - 46633 188 250 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 2 245 3 238 242 77 25 3e-13 MKKTAIITGSSRGLGAKIAITLLEKGYNVVVNYKQNKDKAEKLIRNYNQSRAIAIQADVT DRNDVNRMIQTATQHFGKIDIVINNALVGFKFDPNQQKSFKDLTWEDYQQQLNGTLKGAF NVTQSVIPQFIEQQSGCIVSIGTNLYQNPVVPYHEYTTAKAGLIGFTRNIAAELGQYGIT ANVVSGGLLKTTDASAVTTPEVFDLIAQTTPLRKVTSPQDVANMVVYLASDEARGVTGQN ITVDGGLTMN >gi|224999927|gb|ACJC01000073.1| GENE 43 46989 - 47651 559 220 aa, chain - ## HITS:1 COG:SA0514 KEGG:ns NR:ns ## COG: SA0514 COG1428 # Protein_GI_number: 15926234 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Staphylococcus aureus N315 # 1 220 1 220 220 389 86.0 1e-108 MNNYGIPQNAVITIAGTVGVGKSTLTQALADKLNFKTSFENVDHNPYLDKFYHNFERWSF HLQIYFLAERFKEQKRMFEYGGGFVQDRSIYEDVDIFAKMHEEQGTMSADDYHTYYELFN AMVMTPYFPKPDVLIYLECDYDEVIDRIQQRGRDMEINTDPEYWKKLFKRYENWINNFNA CPVVRLNINEYDIHEDVDSLDSVIDKIAQVIKAYRQVDTR >gi|224999927|gb|ACJC01000073.1| GENE 44 47644 - 48306 671 220 aa, chain - ## HITS:1 COG:SA0515 KEGG:ns NR:ns ## COG: SA0515 COG1428 # Protein_GI_number: 15926235 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Staphylococcus aureus N315 # 16 220 1 205 205 295 75.0 3e-80 MVQYSLSILTFGEVIMNKPFIAIEGPIGVGKSSLAHRLSKTFGFYEEKEIVDENPFLSDF YDDIEKWSFQTEMFFLCNRYKQIRDIESLNQGIVSDYHIHKNKIFAKNTLDAKEFDKFSR IFDILTEDIEMPNTIIFLDADLDVLKSRIAQRNRSFESQIEDDYLLTLKKDYLAYYESLK NDGANVIRIDTSQQDFVKNDYDYQNILNLVKPMIGENKDE >gi|224999927|gb|ACJC01000073.1| GENE 45 48328 - 48834 441 168 aa, chain + ## HITS:1 COG:SA0516 KEGG:ns NR:ns ## COG: SA0516 COG0590 # Protein_GI_number: 15926236 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Staphylococcus aureus N315 # 7 154 7 154 156 245 77.0 3e-65 MKKNHDYMRLAINEAHKAKALGEVPIGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIE RASEVVGSWRLEECTLYVTLEPCVMCAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQP QFNHRAIVEKGILEEECAELLRSFFKEIREKKKAEKQGKIQKDINLLK >gi|224999927|gb|ACJC01000073.1| GENE 46 49002 - 49880 986 292 aa, chain + ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 287 1 287 289 419 77.0 1e-117 MIKLIATDMDGTLLNAGHEITTMNQEAIKFAQANGITVVIATGRAFYEAQTPVAETDLKV PYICLNGAEVRDESFNIMSTSHLNHDLVHKITTALKNNHIYYQIYTNRGIYTEDPKRDLA IYIDIAERAGQKADVDKIRNNIQKRIDNGTLKVVDNYDSIEDIPGELIMKVLAFDADLSK IDQVGQALASSPNLAVSSSSRGNLEITHSNAQKGIALSAIAHQLGIDLTDVIAIGDNLND ISMLERVGYPVAMNNATDEVKHIAKYVTDTNENSGVGKAIMKILKEENNLEV >gi|224999927|gb|ACJC01000073.1| GENE 47 49885 - 50451 629 188 aa, chain + ## HITS:1 COG:SA0518 KEGG:ns NR:ns ## COG: SA0518 COG0431 # Protein_GI_number: 15926238 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Staphylococcus aureus N315 # 1 188 1 188 188 306 81.0 2e-83 MKGLIIIGSAQVGSHTNALSKYLKGQLGEHDVEVEIFDLAEKPIHQLDFAGTTQAVDEIK NNVKSLQSKAMEADFLILGTPNYHGSFSGILKNALDHLNMDHFKMKPVGLICNSGGIVSS EPLSHLRVIVRSLLGIAVPTQIATHDSDYAKLEDGTLYLEDNEFQLRAKLFVDQIVSFVT NSPYEHLK >gi|224999927|gb|ACJC01000073.1| GENE 48 51012 - 53798 3675 928 aa, chain + ## HITS:1 COG:no KEGG:SERP0207 NR:ns ## KEGG: SERP0207 # Name: not_defined # Def: SdrG protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 903 1 867 892 1068 94.0 0 MFGLGHNEAKAEENTVQDVKDSNMDDELSDSNDQSSNEEKNDVINNSQSINTDDDNQIKK EETNSNDAIENRSKDITQSTTNVDENEATFLQKTPQDNTQLKEEVVKEPSSVESSNSSMD TAQQPSHTTINSEASIQTSDNEENSRVSDFANSKIIESNTESNKEENTIEQPNKVREDSI TSQPSSYKNIDEKISNQDELLNLPINEYENKVRPLSTTSAQPSSKRVTVNQLAAEKGSNV NHLIKVTDQSITEGYDDSDGIIKAHDAENLIYDVTFEVDDKVKSGDTMTVNIDKNTVPSD LTDSFAIPKIKDNSGEIIATGTYDNTNKQITYTFTDYVDKYENIKAHLKLTSYIDKSKVP NNNTKLDVEYKTALSSVNKTITVEYQKPNENRTANLQSMFTNIDTKNHTVEQTIYINPLR YSAKETNVNISGNGDEGSTIIDDSTIIKVYKVGDNQNLPDSNRIYDYSEYEDVTNDDYAQ LGNNNDVNINFGNIDSPYIIKVISKYDPNKDDYTTIQQTVTMQTTINEYTGEFRTASYDN TIAFSTSSGQGQGDLPPEKTYKIGDYVWEDVDKDGIQNTNDNEKPLSNVLVTLTYPDGTS KSVRTDEEGKYQFDGLKNGLTYKITFETPEGYTPTLKHSGTNPALDSEGNSVWVTINGQD DMTIDSGFYQTPKYSLGNYVWYDTNKDGIQGDDEKGISGVKVTLKDENGNIISTTTTDEN GKYQFDNLNSGNYIVHFDKPSGMTQTTTDSGDDDEQDADGEEVHVTITDHDDFSIDNGYY DDDSDSDSDSDSDSDDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD SDSDSDSDSDSDSDSDSDSDSDSDSASDSDSDSDSGLDNSSDKNTKDKLPDTGANEDHDS KGTLLGALFAGLGALLLGKRRKNRKNKN >gi|224999927|gb|ACJC01000073.1| GENE 49 53348 - 53647 169 99 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161833643|ref|YP_001597839.1| putative ribosomal protein S1 [Candidatus Sulcia muelleri GWSS] # 5 99 429 541 614 69 46 4e-11 MSNPESLSESESLAESESLSESESLSESESLSESESLSESESLSESESLSESESLSESES LSESESLSESESLSESESLSESESSLSESESLSESESSS >gi|224999927|gb|ACJC01000073.1| GENE 50 54163 - 55665 1208 500 aa, chain - ## HITS:1 COG:SA0523 KEGG:ns NR:ns ## COG: SA0523 COG0438 # Protein_GI_number: 15926243 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 1 497 1 494 496 525 55.0 1e-149 MYYFVGNNIGHKTAGIEKAMINRLNLFKAYHYQAKILLLAWNRYLTQTASQYINSEDYIN MYDYFQEASNVTSVFSKNWIHYWRNECGYTIKPVSETNDVRIYDQQQFIMYAHFADEAYQ KIDYINYFDTYRRKIKRELYDTRGFLSCVRVLSTDQKIQAEYYLSPQGNVKIEKYYDINS NHPYVAKKIILNHLGKTHFLNNETELGAFFIETIYQSSDLFFSDRNLVTSHIFNIVASYI PVIAVLHSTHVKDVTDLTHSPIKNVYKGVFEHLQRYKAIIVSTQQQKADVIERIRGVIPV YAIPVGYSSFEMNDDSNKNNYVSPKKIISVARYSPEKQLIQQIELINRLKDTFPNIELHM YGFGKEEQHLKERIQELGLEKHVILRGFLKDLTDEYQDAYLNLITSNMEGFSLALLECES HGVPSISYDIQYGPGELIQDGKNGYLIEKNNQHMLFEKVKLLLNNPQLQQSFSHHCIETA QKYSQTQIMLLWKNLLQHFN >gi|224999927|gb|ACJC01000073.1| GENE 51 56036 - 56434 419 132 aa, chain - ## HITS:1 COG:SAP018 KEGG:ns NR:ns ## COG: SAP018 COG0394 # Protein_GI_number: 16119218 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 227 83.0 5e-60 MQKKTIYFICTGNSCRSQMAEGFGKLILGDKWNVYSAGIETHGVNPHAIKAMKEVGIDIS HHTSDLINNDILIASDIVVTLCSDADANCPVLPKNVTKEHWGFDDPAGKDWSEFQRVRDE IKAAIETFAHRV >gi|224999927|gb|ACJC01000073.1| GENE 52 56450 - 57742 1272 430 aa, chain - ## HITS:1 COG:SAP017 KEGG:ns NR:ns ## COG: SAP017 COG1055 # Protein_GI_number: 16119217 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Staphylococcus aureus N315 # 3 430 2 429 429 551 79.0 1e-156 MTTVLAIVIFFITLTLIIWQPKGLDIGISAIIGALLVIITGVVNFTDILEVIGIVWNATL TFVSVILISLILDEIGFFEWSAIHMVKASNGHGLKMFIYIMILGALIAAFFANDGAALIL TPIVLAMIRNLGFNNKLVFPFIIACGFIADSTSLPLVVSNLVNIVSADYFGIKFVEYLMR MFIPNLFSLLASILVLWFYFRKSIPKTFDISSISEPKDAIRDTRLFKISWIILALLLIGY LVSEFIHIPVSFITGAIAVIFILLARQSNVVHTKQVIKGAPWNIVIFSIGMYLVIFGLKN VGMTLILADILSSIAQHGLFSSIMGMGFVSAFLSAIMNNMPTVLIDAIAIDQSHAISSIK EGMIYANVIGADLGPKITPIGSLATLLWLHVLVQKGVKISWGTYFKTGIVITIPVLFFTL LGLYLTLIIF >gi|224999927|gb|ACJC01000073.1| GENE 53 57739 - 58056 225 105 aa, chain - ## HITS:1 COG:SAP016 KEGG:ns NR:ns ## COG: SAP016 COG0640 # Protein_GI_number: 16119216 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 103 1 103 104 120 59.0 5e-28 MSYIQLSNILKVIANPSRLEILDLLSCGELCACDLLIHFNFSQPTLSHHMKLLVDCKLVF ANKVGNKQIYELNHRLFEQVTNQLNLLHSTHNQCICHTIKKGEIS >gi|224999927|gb|ACJC01000073.1| GENE 54 58200 - 59078 1061 292 aa, chain - ## HITS:1 COG:SA0524 KEGG:ns NR:ns ## COG: SA0524 COG1469 # Protein_GI_number: 15926244 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 292 1 292 292 525 88.0 1e-149 MTEFDLSTREGRWKHFGSVDPVKGTKPTTKNEMTDLQSTHKNFLFEIEEVGIKNLTYPVL IDQYQTAGLFSFSTSLNKNEKGINMSRILESVEKHYDNGIELEFNTLHQLLRTLQDKMNQ NAAGVDVSGKWFFDRYSPVTHIKAVGHADVTYGLAIENHTVTRKELTIQAKVTTLCPCSK EISEYSAHNQRGIVTVKAYLDKNNDVIDDYKNKILDAMEANASSILYPILKRPDEKRVTE RAYENPRFVEDLIRLIAADLVEFDWIEGFDIECRNEESIHQHDAFARLKYRK >gi|224999927|gb|ACJC01000073.1| GENE 55 59092 - 59757 776 221 aa, chain - ## HITS:1 COG:SA0525 KEGG:ns NR:ns ## COG: SA0525 COG2120 # Protein_GI_number: 15926245 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Staphylococcus aureus N315 # 1 221 1 221 221 380 84.0 1e-106 MTDERHVLVIFPHPDDETFSSAGTIASYIEKGIPVTYACLTLGQMGRNLGNPPFATRESL PLIRERELEEACKAIGITDLRKMGLRDKTVEFEPYDQMDQMIQSLIDETNPSLIISFYPK FAVHPDHEATAEAVVRTVGRMHVSDRPRLTLVAFSNDAPEILGEPDIQNDISQYSDIKLK AFEAHASQTGPFLKQLASPEIDGQAQSFLKIEPFWTYHFES >gi|224999927|gb|ACJC01000073.1| GENE 56 59773 - 60132 370 119 aa, chain - ## HITS:1 COG:no KEGG:SERP0214 NR:ns ## KEGG: SERP0214 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 119 2 120 120 234 98.0 8e-61 MEPIKEQEVLDLLTSYANQPVYLHVETTNGAYANHFDQRVFNAGTFLRNIVVTFEHAQLK GGDKDPYRVGLKLKDGGWVYVQGLTHYEVNKNNEFLIAGFNYEGQLAATIEISKQPFTI >gi|224999927|gb|ACJC01000073.1| GENE 57 60420 - 61151 631 243 aa, chain + ## HITS:1 COG:SA0527 KEGG:ns NR:ns ## COG: SA0527 COG0363 # Protein_GI_number: 15926247 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Staphylococcus aureus N315 # 1 240 1 240 252 330 67.0 2e-90 MKIINLDSKNLASFYVACELFKQIQQSPHTKLGLATGGTMTDVYHYLVNLLTKNKADVSQ VETFNLDEYVGLKASHQQSYHTYMNKVLFEQYPHFAKNHIHIPDGYSENLEAEAEQYNKL LDERGPIDIQILGIGENGHIGFNEPGTDFNSETHVVNLTESTIKANSRFFDNETDVPKQA VSMGLASILKAKRIILLAFGPKKKEAISKLLNEQVTEDVPATILHTHPNVEVYVDDEATP DCL >gi|224999927|gb|ACJC01000073.1| GENE 58 61261 - 61893 897 210 aa, chain + ## HITS:1 COG:SA0528 KEGG:ns NR:ns ## COG: SA0528 COG0269 # Protein_GI_number: 15926248 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Staphylococcus aureus N315 # 1 210 1 210 210 306 87.0 2e-83 MELQLAIDLLNKEEAAKLAQKVEEYVDIVEIGTPIVINEGLPAVQHLNENINNAKVLADL KIMDAADYEVSQAVKYGADIVTILGVAEDASIKAAVEEAHKHGKALLVDMIAVQNLEQRA KELDEMGADYIAVHTGYDLQAEGKSPLDSLRTVKSVIKNSKVAVAGGIKPDTIKDIVAED PDLVIVGGGIANADDPVEAAKQCRAAIEGK >gi|224999927|gb|ACJC01000073.1| GENE 59 61895 - 62443 768 182 aa, chain + ## HITS:1 COG:SA0529 KEGG:ns NR:ns ## COG: SA0529 COG0794 # Protein_GI_number: 15926249 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Staphylococcus aureus N315 # 1 182 1 182 182 234 67.0 6e-62 MSEFNNYRLILEELDSTLSQVDNTQYERFANDVIGADRIFTAGKGRSGFVSNSFAMRLNQ LGKNAYVVGESTTPSIKEHDLFIIISGSGSTEHLRLLAEKAQSVGAKIVLLTTNAESPIG NLAETVVELPAGTKHDVEGSKQPLGSLFEQASLIFLDSIVLPLMDAFHISEKTMQENHAN LE >gi|224999927|gb|ACJC01000073.1| GENE 60 62564 - 63211 466 215 aa, chain + ## HITS:1 COG:SA0530 KEGG:ns NR:ns ## COG: SA0530 COG0546 # Protein_GI_number: 15926250 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 1 215 1 215 215 166 42.0 2e-41 MNFDSYIFDFDGTLIDTTTCHVKATQSAFKRLNLDEPTEQAILHTYHLNLYNNFKTLASH ELSFYQIEKLIDEYHRCFSNDEIHQSKEYTGISEALQFLHNQKKKIFVVSNKETLTTQRY LDYLGLSRFITDSLGVCIKNEDKLLCEMIQNLIQKHHLMVGKTVYIGDTAQDIKSANQAH VQTCAVTWGAQSAHELLHENPHYVVNDPEELLTIL >gi|224999927|gb|ACJC01000073.1| GENE 61 63341 - 64690 1061 449 aa, chain + ## HITS:1 COG:SA0533 KEGG:ns NR:ns ## COG: SA0533 COG0318 # Protein_GI_number: 15926253 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Staphylococcus aureus N315 # 1 449 5 458 458 376 43.0 1e-104 MEYLQHYINQYPHRLALVFEDRHLTYGELSKEIYQASMRYKEVKLNEKVGLMDDHPVNNI INYFAVHQRGGIPCIFNHQWSNERIHQLVKSYDIQWLIKDNHLTLNHDDSIYNDEVIPRN VIHIGFTSGTTGLPKAFYRNEHSWIVSFKENEKLLQHYEETIVAPGPLSHSLSLYACIYA LSTGKTFIGQKNFNPLSLMRLINQLNKATAIFVVPTMVQQLISTQQHCSSIKSILSSGAK LTLQQFQQISTLYPQANLIEFFGTSEASFISYNFNQSSPAHSVGKLFPHVETRLLNQDDD AVGLLAVRSEMVFSGYVGQSNQEGSWIKTGDFAYIKNQHLFLVGRESDRIIVGGVNVYPT AIESLIMDIEGIDEALVIGIPHAKFGEIAILLYSGKVQLNYRQIKSFLMKQLSRQEVPSK LKKIDHMIYTESGKIARKEMKNKFINGEL >gi|224999927|gb|ACJC01000073.1| GENE 62 64693 - 65841 1213 382 aa, chain + ## HITS:1 COG:SA0534 KEGG:ns NR:ns ## COG: SA0534 COG0183 # Protein_GI_number: 15926254 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Staphylococcus aureus N315 # 1 379 1 379 379 526 65.0 1e-149 MKQPVIIAAKRIAFGKYGGRLKHLEPESLLEPLFNHFTDQYPKVMSLLDDVILGNTVGNG GNLARKSLLEAGLDFKIPGITIDRQCGSGLEAVIQACRMVQSGAGTIYIAGGVESTSRAP WKIKRPQSVYESEFPQFFERAPFAREGEDPSMIEAAENVAKKYHISRNEQDDFAYRSHQL ASKNMNNGNISQEILPFKVKGECFNQDESIKPQLTLKTLGRLKPLLNEGTVTVGNSCMKN DGAVLLIVMEENRARQLGFTEGIKFVNSATVGVQPQYLGVGPVPAVNQLLARERLTINDI NAVELNEAFSSQVIASQQQLNIPLNKLNCWGGAIATGHPYGASGAALVTRLFYMKHQFRT VATMGIGGGIGNAALFERWYGN >gi|224999927|gb|ACJC01000073.1| GENE 63 65807 - 66169 328 120 aa, chain + ## HITS:1 COG:no KEGG:SE0347 NR:ns ## KEGG: SE0347 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 120 1 120 120 210 100.0 2e-53 MQLYLKDGMEIREVQFTNEEVQNYCELLNIKYDHYVPTLMCAKLWPQFELFQSFSKKPII LKETHIKTQHQLQVDCTYEATLHKVSQKLIKNIIKYTYGLEINKDKKHCMYIKQIFIEVR >gi|224999927|gb|ACJC01000073.1| GENE 64 66173 - 66433 268 86 aa, chain + ## HITS:1 COG:no KEGG:SERP0222 NR:ns ## KEGG: SERP0222 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 86 1 86 86 144 100.0 8e-34 MKFTIEMVNEYLTIVNDENPIHRSIVPGQLICEKVFSELNVNWMNYKIKYLKPINIDEEV QFLIKENDEIIVFKTYDDIKLTITRS >gi|224999927|gb|ACJC01000073.1| GENE 65 66620 - 68041 1201 473 aa, chain + ## HITS:1 COG:SA0531 KEGG:ns NR:ns ## COG: SA0531 COG0477 # Protein_GI_number: 15926251 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 468 1 465 466 626 71.0 1e-179 MEFDKNQITMVDGNNAKKTVIATGIGNAMEWFDFGLYSYLAVIISKNFFSQVDNDQLKLV FTFATFAIAFLLRPIGGIVFGIIGDKYGRKIVLTTTIILMAFSTLLIGVLPTYNEIGVWA PILLLLARVLQGFSTGGEYAGAMVYVAESSPDRKRNSLGCGLEIGTLSGYIAASILVFAL NISLTETQLNSWGWRIPFLLGMFLGLFGLYLRRKLEESPIYENEQRELQKHPTREPIGVF TLIRFYYKDIIVCFVAVAFFNVTNYMVTAYLPSYLEGVIKLNGTTTSIMITCIMVIMIPL ALMFGRIADRIGEKKVFLIGLGGLILLSVVAFSLMQLQSLFFVSIGVLILGFFLSTYEAT MPGSLPTMFYTHVRYRALAITFNVSVSLLGGTTPLIASYLVSTTNNPLTPAYYLTVISII GFIVIALLHKSTASKSLKGSYPNVDNEKDREYYEKNPEQALWWLKERQEKEKF >gi|224999927|gb|ACJC01000073.1| GENE 66 68334 - 68513 91 59 aa, chain - ## HITS:1 COG:no KEGG:SERP0224 NR:ns ## KEGG: SERP0224 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 59 1 59 59 97 100.0 1e-19 MIIYRRNIENGTPVYEIITKTFKTITIKCDETFNKYEIYQLLSLLENDVDNMPTSYSYR Prediction of potential genes in microbial genomes Time: Sun May 29 07:31:02 2011 Seq name: gi|224999926|gb|ACJC01000074.1| Staphylococcus epidermidis W23144 contig00114, whole genome shotgun sequence Length of sequence - 14481 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 137 - 967 1166 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase - Prom 995 - 1054 3.7 2 1 Op 2 . - CDS 1074 - 2054 821 ## COG3049 Penicillin V acylase and related amidases - Prom 2111 - 2170 10.3 + Prom 2081 - 2140 8.4 3 2 Op 1 . + CDS 2221 - 2871 575 ## COG0692 Uracil DNA glycosylase 4 2 Op 2 . + CDS 2881 - 3240 449 ## SERP0229 hypothetical protein 5 2 Op 3 1/0.667 + CDS 3262 - 3633 530 ## COG2363 Uncharacterized small membrane protein + Prom 3669 - 3728 4.6 6 2 Op 4 . + CDS 3749 - 5239 1277 ## COG0531 Amino acid transporters + Term 5266 - 5326 19.1 - Term 5254 - 5314 16.4 7 3 Op 1 12/0.000 - CDS 5400 - 5852 423 ## COG3610 Uncharacterized conserved protein 8 3 Op 2 1/0.667 - CDS 5865 - 6629 847 ## COG2966 Uncharacterized conserved protein - Prom 6772 - 6831 9.0 - Term 7065 - 7114 11.2 9 4 Tu 1 . - CDS 7133 - 7882 952 ## COG3253 Uncharacterized conserved protein - Prom 7920 - 7979 7.4 + Prom 7956 - 8015 6.7 10 5 Op 1 1/0.667 + CDS 8053 - 9042 1393 ## COG0280 Phosphotransacetylase 11 5 Op 2 1/0.667 + CDS 9042 - 9881 671 ## COG0095 Lipoate-protein ligase A + Term 9918 - 9955 5.1 12 6 Op 1 5/0.000 + CDS 10574 - 11494 906 ## COG1577 Mevalonate kinase 13 6 Op 2 5/0.000 + CDS 11502 - 12482 947 ## COG3407 Mevalonate pyrophosphate decarboxylase 14 6 Op 3 . + CDS 12495 - 13571 869 ## COG1577 Mevalonate kinase + Term 13618 - 13661 6.6 + Prom 13673 - 13732 8.6 15 7 Tu 1 . + CDS 13782 - 14123 475 ## SH2399 hypothetical protein + Term 14129 - 14186 7.1 Predicted protein(s) >gi|224999926|gb|ACJC01000074.1| GENE 1 137 - 967 1166 276 aa, chain - ## HITS:1 COG:SA0537 KEGG:ns NR:ns ## COG: SA0537 COG0351 # Protein_GI_number: 15926258 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Staphylococcus aureus N315 # 1 276 1 276 276 489 90.0 1e-138 MALKKVLTIAGSDTSAGAGMQADLKTFQELDVYGMVALTSIVTMDKETWSHDVTPIDMNV FEKQLETAISIGPDAIKTGMLGTQDIIKRAGDVFVESGADYFVVDPVMVCKGEDEVLNPG NTEAMIQYLLPKATVVTPNLFEAGQLSGLGKLTSIEDMKKAAQVIYDKGTPHVIIKGGKA LDQDKSYDLYYDGQQFYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAIIAAKAF VASAIKNGWKMNDFVGPVDHGAYNRIEQINVEVTEV >gi|224999926|gb|ACJC01000074.1| GENE 2 1074 - 2054 821 326 aa, chain - ## HITS:1 COG:SA0264 KEGG:ns NR:ns ## COG: SA0264 COG3049 # Protein_GI_number: 15925977 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Staphylococcus aureus N315 # 1 318 1 320 330 252 39.0 5e-67 MCTAISLYTKQRYHYLARTMDFAFEFNGIPTIVPRHYHYQFDLDSDMRLEYGFVGTNLKV GRYRFGDGINEKGLAISNHYFTGEASYNTHKRYGYFNLAPEEFIVWVLGFNKSISELKQK VKKINIMNEKNTTLNIVPPLHFMVTDETGHTVAIEPYNGLLIVKDNYVHTLTNAPKLDWH LSNLRNYAYLTPQKSTNQLIGKMLVRSMGCEAGTNGLPGGYTSTERFIRATYLRHQLRCS HNEDENLMNCFKVLESVSIPQGAVIDANKIHYTQYQLVMESKERSYYIKPYFSNQIFKIK LTEDLLSKNELTFLPINHELKITSIQ >gi|224999926|gb|ACJC01000074.1| GENE 3 2221 - 2871 575 216 aa, chain + ## HITS:1 COG:SA0538 KEGG:ns NR:ns ## COG: SA0538 COG0692 # Protein_GI_number: 15926259 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Staphylococcus aureus N315 # 1 216 1 216 218 387 82.0 1e-107 MKWSEVFHDITTRHDFQAMHDFLEKEYTTQIVYPDKKNIYQAFDLTPFEDIKVVILGQDP YHGPNQAHGLAFSVQPHAKFPPSLRNMYQELENDIGCHRTSPHLQDWAREGVLLLNTVLT VRQGEAHSHRNIGWETFTDEIIQAVSNYREHVVFILWGRPAQQKERFIDTSKHLIIKSPH PSPLSAFRGFFGSKPYSTTNNYLKSKGKTPVQWCES >gi|224999926|gb|ACJC01000074.1| GENE 4 2881 - 3240 449 119 aa, chain + ## HITS:1 COG:no KEGG:SERP0229 NR:ns ## KEGG: SERP0229 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 119 1 119 119 177 98.0 2e-43 MNKEQILQLIEQELVQADEAQTDTEFEKHMYAIHMLTSLVSSHQSRSTIEKLNRSKPMNS NIKDDYEMKQQTSQKHDVTAAEIEAMGGKVPQSMKKHHTSNNMMITDDHVGNGESIFDF >gi|224999926|gb|ACJC01000074.1| GENE 5 3262 - 3633 530 123 aa, chain + ## HITS:1 COG:SA0540 KEGG:ns NR:ns ## COG: SA0540 COG2363 # Protein_GI_number: 15926261 # Func_class: S Function unknown # Function: Uncharacterized small membrane protein # Organism: Staphylococcus aureus N315 # 2 123 1 122 122 160 81.0 4e-40 MMKVFIILGALNAMMAVGTGAFGAHGLEGKLSDKYMSIWEKATTYQMYHGLGLLVIGLIS GTTSMNVNWAGWLLFFGIVFFSGSLYFLALTQVRILGAITPIGGVLFIIGWLVLVIATLK FAG >gi|224999926|gb|ACJC01000074.1| GENE 6 3749 - 5239 1277 496 aa, chain + ## HITS:1 COG:SA0541 KEGG:ns NR:ns ## COG: SA0541 COG0531 # Protein_GI_number: 15926262 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 493 1 493 494 752 84.0 0 MENKNNNVDRGNLKQNLSEKFVWAIAYGSCIGWGAFILPGDWIKQSGPIASSIGIVIGAL LMILIAVSYGALVEKFPVSGGAFAFSFLSFGRYVSFFSSWFLTFGYVCVVALNATAFSLL IKFLLPNVLNNGKLYTVAGWDVYITEIVIATVLLIVFMLITIRGASVSGSLQYYFCVAMV LVVALMFIGSFFSSHFSLSHLEPLASVDKGWFQSIIMIVSIAPWAYVGFDNIPQTAEEFN FSPNKTFKLIVYSLLAASLTYVVMLLYTGWLGTQATSLNGNLWLTGAVTQDAFGFIGLAV LAVAIIMGIFTGLNGFLMSSSRLLFSMGRSGIMPTVFSKLHSKHKTPYVAIIFLVAVSLI APWLGRTALTWIVDMSSTGVSIAYFITCLSATKLFSFNKQSNTYAPVYKIFGIIGSIVSF VFLCLLLIPGSPAALSIPSYIALGIWLVIGLIFFIIRLPKLKKMNNDEMSRLILNHSEDE VLEMIHEPGQSNSTNK >gi|224999926|gb|ACJC01000074.1| GENE 7 5400 - 5852 423 150 aa, chain - ## HITS:1 COG:SA0542 KEGG:ns NR:ns ## COG: SA0542 COG3610 # Protein_GI_number: 15926263 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 150 1 150 150 230 86.0 5e-61 MFWIFNFIFSFLASLFFCVIFDAPRKLYFACGFVGACGWMVYTLLFNGFELHTIYSSFFG SLALGLLSHYMARRKKEPVIIFMVTGIIPLVPGGLAYDATKNLVLLHFGKAINTMLEVTL IAGAIALGLLFADQISKIVISGFARTRKRL >gi|224999926|gb|ACJC01000074.1| GENE 8 5865 - 6629 847 254 aa, chain - ## HITS:1 COG:SA0543 KEGG:ns NR:ns ## COG: SA0543 COG2966 # Protein_GI_number: 15926264 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 39 254 1 216 216 330 82.0 2e-90 MNKDTIETSHEALIKDVVMITARILLESGAEGTRVEDTMARIATKLGYPESNSFVTNTVI EFVLHNEAYPRLYRIKTRDTNLIKISQANEISRQITNGTMTLEEAKYQLEEIYVAKRDSS LPFKGIAAAIIASSFLYLQGGRLVDIITAVLAGTIGYLVVEILDRKLHAQFIPEFIGSLV IGIISVIGHAFVPSGDLATIIIAAVMPIVPGVLITNAIQDLFGGHMLMFTTKSLEALVTA FGIGAGVSSILILV >gi|224999926|gb|ACJC01000074.1| GENE 9 7133 - 7882 952 249 aa, chain - ## HITS:1 COG:SA0544 KEGG:ns NR:ns ## COG: SA0544 COG3253 # Protein_GI_number: 15926265 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 249 1 249 250 428 80.0 1e-120 MSEAAETLDGWYSLHLFYAVDWTTFRLIAEDDREAMITELETFVKDKAVARESHQGDHAI YNITGQKADLLLWFLRPEMKELNQIENEFNKLRIADYLIPTYSYVSVIELSNYLAGKSDE DPYENPHVKARLYPELPHSEYICFYPMDKRRNETYNWYMLPIEDRKTLMYNHGMIGRKYA GKIKQFITGSVGFDDYEWGVTLFSNDVLQFKKIVYEMRFDETTARYGEFGSFYIGHILNI EDFKQFFSI >gi|224999926|gb|ACJC01000074.1| GENE 10 8053 - 9042 1393 329 aa, chain + ## HITS:1 COG:SA0545 KEGG:ns NR:ns ## COG: SA0545 COG0280 # Protein_GI_number: 15926266 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Staphylococcus aureus N315 # 1 329 1 328 328 531 87.0 1e-151 MADLLSVLQDKLSGKNVKIVLPEGEDERVLIAATQLQKTDYVSPIVLGNEDNIKSLASKH ALDLTQIEIIDPATSELKDELVDAFVERRKGKATKEQAVELLDNVNYFGTMLVYTGKAEG LVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKGDEQYIFGDCAINPELDAQGLAE IAVESAKSAQSFGMNPKVAMLSFSTKGSAKSDDVTKVQEALKLAQEKAEADQLEHVVIDG EFQFDAAIVPSVAEKKAPGAKIQGDANVFVFPSLEAGNIGYKIAQRLGGYDAVGPVLQGL NSPVNDLSRGCSTEDVYNLSIITAAQALQ >gi|224999926|gb|ACJC01000074.1| GENE 11 9042 - 9881 671 279 aa, chain + ## HITS:1 COG:SA0546 KEGG:ns NR:ns ## COG: SA0546 COG0095 # Protein_GI_number: 15926267 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Staphylococcus aureus N315 # 1 277 1 277 278 479 82.0 1e-135 MDLATKYFNQINWRYVDHSSGLEPMQSFAFDDTFSESVGKDLSCNVVRTWIHQHTVILGI HDSRLPFLSDGIRFLTDEQGYNAIVRNSGGLGVVLDQGILNISLIFKGQTETTIDEAFTV MYLLISKMFEDEDVSIDTKEIEQSYCPGKFDLSINDKKFAGISQRRVRGGIAVQIYLCIE GSGSERALMMQQFYQRALKGQTTKFHYPDIDPSCMASLETLLNREIKVQDVMFLLLYALK DLGANLNMDPITEDEWTRYEGYYDKMLERNAKINEKLDF >gi|224999926|gb|ACJC01000074.1| GENE 12 10574 - 11494 906 306 aa, chain + ## HITS:1 COG:SA0547 KEGG:ns NR:ns ## COG: SA0547 COG1577 # Protein_GI_number: 15926268 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 28 306 1 279 279 405 76.0 1e-113 MTRQGYGESTGKIILMGEHAVTFGQPAIAIPFNAGKIKVLIESLDEGNYSSITSDVYDGM LYDAPEHLKSIINRFVEKSGVKEPLSVKIQTNLPPSRGLGSSAAVAVAFVRASYDFMDQP LDDKTLIKEANWAEQIAHGKPSGIDTQTIVSNKPVWFKQGKAETLKSLKLNGYMVVIDTG VKGSTKQAVEDVHVLCESDEYMKYVEHIGTLVHRASESIEQHDFHHLADIFNACQEDLRH LTVSHDKIEKLLQIGKEHGAIAGKLTGGGRGGSMLLLAENLQTAKTIVAAVEKAGAAHTW IEHLGG >gi|224999926|gb|ACJC01000074.1| GENE 13 11502 - 12482 947 326 aa, chain + ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 1 326 2 327 327 447 72.0 1e-125 MKSGKARAHTNIALIKYWGKADETYIIPMNNSLSITLDRFYTETKVTFDPDFTEDRLILN GNEVNAKEKEKIQNYMNIVRDLAGNRLHARIESENHVPTAAGLASSASAYAALAAACNEA LSLNLSDTDLSRLARRGSGSASRSIFGGFAEWEKGHDDLTSYAHEINSNGWEKDLSMIFV VINNQSKKVSSRSGMSLTRDTSRFYQYWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGL RMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAGPNVKVLVEKKNKQAVM EQFLKVFDESKIIASDIISSGVEIIK >gi|224999926|gb|ACJC01000074.1| GENE 14 12495 - 13571 869 358 aa, chain + ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 588 79.0 1e-168 MIQVKAPGKLYIAGEYAVTEPGYKSILIAVNRFVTATIEASNKVEGSIHSKTLHYEPVKF DRNEDRIEISDVQAAKQLKYVVTAIEVFEQYVRSCNMNLKHFHLTIDSNLADNSGQKYGL GSSAAVLVSVVKALNEFYGLELSNLYIYKLAVIANMKLQSLSSCGDIAVSVYSGWLAYST FDHDWVKQQMEETSVNDVLEKNWPGLHIEPLQAPENMEVLIGWTGSPASSPHLVSEVKRL KSDPSFYGDFLDQSHACVESLIQAFKTNNIKGVQKMIRINRRIIQSMDNEASVEIETDKL KKLCDVGEKHGGASKTSGAGGGDCGITIINKVIDKNIIYNEWQMNDIKPLKFKIYHGQ >gi|224999926|gb|ACJC01000074.1| GENE 15 13782 - 14123 475 113 aa, chain + ## HITS:1 COG:no KEGG:SH2399 NR:ns ## KEGG: SH2399 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 113 1 113 113 124 93.0 9e-28 MKNKFLICDECQAVNLKSLKRKLEKLDPEAEIEIGCQSYCGPGRRKTFAFVNNRPLAALT EEELMEKVTKQLKKPRDPEEEERLRKRNEERKRRKEEQDRKLKEKLKKRKAEK Prediction of potential genes in microbial genomes Time: Sun May 29 07:31:10 2011 Seq name: gi|224999925|gb|ACJC01000075.1| Staphylococcus epidermidis W23144 contig00115, whole genome shotgun sequence Length of sequence - 8062 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 - CDS 3 - 1325 403 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 2 1 Op 2 . - CDS 1330 - 1752 381 ## COG1959 Predicted transcriptional regulator - Prom 1779 - 1838 6.3 + Prom 1748 - 1807 7.9 3 2 Tu 1 . + CDS 1909 - 2847 1172 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) + Term 2868 - 2906 4.1 + Prom 3209 - 3268 5.0 4 3 Op 1 . + CDS 3308 - 5989 2734 ## COG2409 Predicted drug exporters of the RND superfamily 5 3 Op 2 1/0.000 + CDS 6013 - 6957 1241 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components + Term 6987 - 7020 -0.7 + Prom 7129 - 7188 8.2 6 3 Op 3 . + CDS 7307 - 7876 648 ## COG1309 Transcriptional regulator + Term 7879 - 7923 4.1 Predicted protein(s) >gi|224999925|gb|ACJC01000075.1| GENE 1 3 - 1325 403 441 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 434 1 443 458 159 26 5e-39 MKNYDLIIIGFGKAGKTLAAHAAGHGQKVAVVEQSTKMYGGTCINIGCIPTKTLIHDGIE GSSFKEAITRKKEVVQALNNKNYQGLNSKDNIDVLNYKANFISNEVIELQDNNGTIQETI TADKIVINTGSRANIPDIKGIDTAQNIYDSTGLLNIDYQPQELVIIGGGYIALEFASMFA NFGTHVTILERGDAIMTNEDQDIANLIVKDLQDKGVTINTNTSTIAFSNNKDQTIIHTNH GEISADTVLLATGRKPNTNHLGLENTDVKIGKQGEVIVNKHLQSTVKHIYAAGDVKGGLQ FTYISLDDYRIIKSHLFGDGSRTTENRGAIPYTVFIDPPLSRVGLIASEAKLQGYDILEN KVFVSNIPRHKINNDSRGLFKAVINKDTKEILGASLYGKESEELINLIKLAIDQHIPYTV LRDNIYTHPTMTESFNDLFLE >gi|224999925|gb|ACJC01000075.1| GENE 2 1330 - 1752 381 140 aa, chain - ## HITS:1 COG:SA0552 KEGG:ns NR:ns ## COG: SA0552 COG1959 # Protein_GI_number: 15926273 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 139 1 139 146 151 58.0 3e-37 MNLEFNIAVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGKAG GYQANQHTAQVDLAKLYQHFVLDKNNSQRRFTGASDSHCQISKKIAHTMSHYYSQEHQII LDFYKDKNITDVLADILQEG >gi|224999925|gb|ACJC01000075.1| GENE 3 1909 - 2847 1172 312 aa, chain + ## HITS:1 COG:SA0557 KEGG:ns NR:ns ## COG: SA0557 COG0667 # Protein_GI_number: 15926278 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 311 1 311 312 466 78.0 1e-131 MVKQVRLGKSDVNVFPIALGTNAVGGHNLYPNLDEEQGKEVVRQAIDNGITLLDTAYIYG PERSEELVGQVVKEYPREKVQIATKGSHVIKENEEVVQNNDPEYLKQQVENSLERLQVDY IDLYYIHFPDDDTPKDKAVAALKELKDEGKIKAIGVSNFSLEQLKEANKDGYVDVVQLEY NLLHRENEEVMAYAAENNITFVPYFPLASGILAGKYDENQTFEDHRAERPDFQPDVFKDN VRRVKALTDIAEAHDTTIANVVLAFYLTRPSLDVVIPGAKRAEQVVENIDAANIELSQGE IDKIDSLFPIKK >gi|224999925|gb|ACJC01000075.1| GENE 4 3308 - 5989 2734 893 aa, chain + ## HITS:1 COG:SA2339 KEGG:ns NR:ns ## COG: SA2339 COG2409 # Protein_GI_number: 15928131 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Staphylococcus aureus N315 # 1 734 1 733 829 946 64.0 0 MAKLLYKLGKFIAKNKWLSVIGWLVILGVIITPLMINSPKFDSDITMNGLKSLDTNDKIS KEFHQDSEKASMKIVFHSNKNDGLNNKDTKKDIEDALDNIRQNDDYIQNISNPYDSGQVN DEGDTAIANVSYVVPQTGLKDSSKHIIDKELKDVTDNHNVQIEKTQGGAMNSEPGGTSEI VGIIVAFVILLITFGSLIAAGMPIISAIIGLGSSVGIIALLTYIFDIPNFTLTLAVMIGL AVGIDYSLFILFRFKELKKKGVDTVEAIATAVGTAGSAVIFAGLTVMIAVCGLSLVGIDF LAVMGFASAISVLFAVLAALTLLPALISIFHKSIKIKDKPTKSKDPKDHSWAKFIVGKPV IAVIVSLIILILAAIPVSGMRLGIPDDSLKPTDSSEYKAYKLISDNFGEGYNGQIVMLVN TKDGGSKSTIERDLNNMRSDLEDIDNVDTVSKAQLTDNNNYALFTIIPEKGPNSQSTENL VYDLRDYHSQAQEKYDYSTEISGQSVINIDMSEKLNNAIPVFAGVIVVLAFFLLMIVFRS ILVPLKAVLGFILSLMATLGFTTLVIQHGFMGSLFGIENTGPLLAFLPVITIGLLFGLAI DYELFLMTRVHEEYSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQDDSAIKSM GIALGFGVLFDAFVVRMTLIPALTKLFGKASWYLPKWLGAVLPNVDVEGKALEEDNHHDT SSEKGHVNDKNSEYSRQDKDNYVYQNDKRNYNRNYNDEDYNRSVHLNNHHDQHHRQHQYD NQRDDIDYESLYTQDGDHTHHDERNYNDRHYQDNYDRNDDYRHNNHDHQNDNHDYHDSNF DKTTNLYKELTDSNIDQDVLFKALMLYARENNKGVYDRYNRSSQHRHDDELRD >gi|224999925|gb|ACJC01000075.1| GENE 5 6013 - 6957 1241 314 aa, chain + ## HITS:1 COG:SPy0184_2 KEGG:ns NR:ns ## COG: SPy0184_2 COG2113 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Streptococcus pyogenes M1 GAS # 32 307 9 267 269 124 33.0 3e-28 MLKRRSSKFLGLLATLALAIVLSACGNSGNGSGSSDDSQTSLGNKEIEISYIASDNSTPR SLVIAEVLKKAGYDVTTTPVTASGPLYAAVSENSDSFHASGIFPTTDKSYYDKFKSKLTI YDDKHLIDNAKVGLAVPKYVQDVDSISDLKNSDFGKSVDWAIQGTDARNGVMQETKDELD SDNLDKYSLKESSDQDQFKKIQSAFKQQEPIVFTAMEPSWFSKELDVKMLKDPDNIYGNN NQHIDLVFNKDFKEAHPAAYTVATRMADDWSKSDEDKLAKKIFVDNKNPEQVAKDYVDDN DNKVDEWLEGIETI >gi|224999925|gb|ACJC01000075.1| GENE 6 7307 - 7876 648 189 aa, chain + ## HITS:1 COG:BH0719 KEGG:ns NR:ns ## COG: BH0719 COG1309 # Protein_GI_number: 15613282 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 13 172 16 172 188 63 25.0 2e-10 MPSANQKRMIKHIHETVFILLHDYHFDEITVQKICDIAEINRSTFYRYFQDKYELLYTLP DFITQQIIAKSDTSADITTPVSFEDFIYYIGNNKKIFKHLLVSSRQADVFRSLTNVSREM MLNNPTRKRDPLAQKIRESKHPEIVADFYSSGVIEVLRRWVENDYNYTVEEVFVTLNNVL ETSLYCYDK Prediction of potential genes in microbial genomes Time: Sun May 29 07:31:11 2011 Seq name: gi|224999924|gb|ACJC01000076.1| Staphylococcus epidermidis W23144 contig00116, whole genome shotgun sequence Length of sequence - 3577 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 150 - 209 7.7 1 1 Op 1 1/0.000 + CDS 391 - 867 550 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 869 - 928 11.0 2 1 Op 2 . + CDS 959 - 2257 1191 ## COG1078 HD superfamily phosphohydrolases 3 1 Op 3 . + CDS 2314 - 2820 442 ## SERP0252 hypothetical protein + Term 2906 - 2957 2.7 - Term 2689 - 2722 -0.5 4 2 Tu 1 . - CDS 2907 - 3575 646 ## COG1641 Uncharacterized conserved protein Predicted protein(s) >gi|224999924|gb|ACJC01000076.1| GENE 1 391 - 867 550 158 aa, chain + ## HITS:1 COG:SA0559 KEGG:ns NR:ns ## COG: SA0559 COG0454 # Protein_GI_number: 15926280 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 221 75.0 4e-58 MYSVRQATEKDAVAIRDVATKAWYNTYLNIYAASTVNELLAASYNETHLKKRLNEQLFLV AEEDSEIVGFANFIYGEELYLSAHYVRPESQHKGYGTRLLEAGLKRFKDQYETVYLEVDN NNSNGIEYYQNHGFEIIRSYQPEMYGEIMDLALMKKSF >gi|224999924|gb|ACJC01000076.1| GENE 2 959 - 2257 1191 432 aa, chain + ## HITS:1 COG:SA0560 KEGG:ns NR:ns ## COG: SA0560 COG1078 # Protein_GI_number: 15926281 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Staphylococcus aureus N315 # 4 432 3 431 431 762 86.0 0 MTLSSYATSKLTEEKVFKDPIHRFIHVQDQLIWDLIKTKEFQRLRRIKQLGTLYLSFHTA EHSRFGHSLGVYEIVRRMIDETFIGQDAWDNTDRPLALCAALLHDLGHGPFSHSFEKIFN TDHEAFTQAIITGNTEVNGVLSRVSDNFPKQVADVINKTHDNKLVISMISSQIDADRMDY LQRDAYFTGVTYGSFDMERILRLMRPSKEEVLIKDSGMHAVENFIMSRYQMYWQIYFHPV SRGGEVLLNNCLKRAKQLYNEGYEFKMYPKDFIPFFEGTMTIEQYVELDEAVVLYYLKKW IHENDPILSDLSRRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLP YDYDRPGSNRKPIHLLKSNGGITEISNQSLVINSITGINREDHKLYYPKEMILKIKDYQI KGSIINLLNELN >gi|224999924|gb|ACJC01000076.1| GENE 3 2314 - 2820 442 168 aa, chain + ## HITS:1 COG:no KEGG:SERP0252 NR:ns ## KEGG: SERP0252 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 168 4 171 171 336 98.0 2e-91 MSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDIENQKAFVDIGGMHARAEVEK GVKWITDKSQVEGEEAKAYWLCWVTTERSEQGPYYAGVTACYLLVNKSIRRGYKSMPEHV NMMDKSMKHQFIIDQIGDDNKQILKEFLQNHNVEMWNNSSEELYRAFE >gi|224999924|gb|ACJC01000076.1| GENE 4 2907 - 3575 646 222 aa, chain - ## HITS:1 COG:slr1411 KEGG:ns NR:ns ## COG: slr1411 COG1641 # Protein_GI_number: 16329325 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Synechocystis # 3 208 187 408 422 158 37.0 6e-39 ILKGIPIAHFDVQSELTTPTGAAFAKGLVSSFGPFPSATIQHIGYGAGSKDFNFPNILRV IQFDSEFEQQDSVQVIECQIDDMTPEALGDFMNNALEQGALDAYYTPIFMKKSRPSTQLT LICKLHDKIYFEQLILQETSSLGVRSTSVNRKILNRAFKILSTQHGTVSIKFGLQNGKIM KMKPEYEDLKKMAKTTNQPFQVIHNEVLQQLYQTYRIGDILQ Prediction of potential genes in microbial genomes Time: Sun May 29 07:31:20 2011 Seq name: gi|224999923|gb|ACJC01000077.1| Staphylococcus epidermidis W23144 contig00117, whole genome shotgun sequence Length of sequence - 20742 bp Number of predicted genes - 27, with homology - 27 Number of transcription units - 10, operones - 9 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.500 - CDS 1 - 517 579 ## COG1641 Uncharacterized conserved protein 2 1 Op 2 2/0.500 - CDS 514 - 1290 690 ## COG1691 NCAIR mutase (PurE)-related proteins 3 1 Op 3 . - CDS 1305 - 2132 1029 ## COG1606 ATP-utilizing enzymes of the PP-loop superfamily 4 1 Op 4 . - CDS 2152 - 3426 1272 ## COG3875 Uncharacterized conserved protein - Prom 3570 - 3629 8.7 + Prom 3608 - 3667 6.5 5 2 Op 1 . + CDS 3709 - 4731 1496 ## COG1064 Zn-dependent alcohol dehydrogenases + Prom 4733 - 4792 4.4 6 2 Op 2 . + CDS 4814 - 5206 412 ## SERP0258 hypothetical protein + Term 5440 - 5495 6.1 - Term 5436 - 5471 -0.7 7 3 Op 1 . - CDS 5536 - 5973 179 ## gi|242241951|ref|ZP_04796396.1| hypothetical protein HMPREF0791_0477 8 3 Op 2 . - CDS 5991 - 7208 1075 ## COG0582 Integrase - Term 7218 - 7246 -0.1 9 3 Op 3 . - CDS 7251 - 7652 551 ## SACOL0888 pathogenicity island, lipoprotein, putative - Prom 7717 - 7776 3.6 10 4 Tu 1 . - CDS 7791 - 8582 695 ## COG1396 Predicted transcriptional regulators - Prom 8662 - 8721 6.5 + Prom 8619 - 8678 8.1 11 5 Op 1 . + CDS 8717 - 8920 268 ## COG1476 Predicted transcriptional regulators 12 5 Op 2 . + CDS 8956 - 9228 281 ## SAR0369 hypothetical protein 13 5 Op 3 . + CDS 9244 - 9399 92 ## gi|242241957|ref|ZP_04796402.1| hypothetical protein HMPREF0791_0483 14 5 Op 4 . + CDS 9401 - 9610 357 ## gi|242241958|ref|ZP_04796403.1| hypothetical mobile element-associated protein 15 5 Op 5 . + CDS 9615 - 9956 456 ## gi|242241959|ref|ZP_04796404.1| hypothetical protein HMPREF0791_0485 + Prom 9960 - 10019 4.1 16 6 Op 1 . + CDS 10048 - 10920 586 ## SH2094 hypothetical protein 17 6 Op 2 . + CDS 10935 - 12635 1259 ## COG5519 Superfamily II helicase and inactivated derivatives + Prom 12844 - 12903 7.2 18 7 Op 1 . + CDS 12946 - 13464 453 ## gi|242241962|ref|ZP_04796407.1| hypothetical mobile element-associated protein 19 7 Op 2 . + CDS 13469 - 14110 623 ## SAV0794 hypothetical protein + Prom 14309 - 14368 9.7 20 8 Op 1 . + CDS 14450 - 14788 470 ## SAB0354 pathogenicity island protein 21 8 Op 2 . + CDS 14801 - 15334 415 ## gi|242241965|ref|ZP_04796410.1| SaPI1 ORF5 family protein 22 8 Op 3 . + CDS 15354 - 16022 984 ## SAR0379 hypothetical protein + Term 16052 - 16087 2.5 23 8 Op 4 . + CDS 16100 - 16582 491 ## COG3728 Phage terminase, small subunit + Term 16770 - 16809 7.5 + Prom 16928 - 16987 9.0 24 9 Op 1 . + CDS 17179 - 17499 240 ## gi|242241969|ref|ZP_04796414.1| hypothetical protein HMPREF0791_0495 + Term 17518 - 17571 -0.1 + Prom 17511 - 17570 9.1 25 9 Op 2 . + CDS 17633 - 18205 421 ## gi|242241970|ref|ZP_04796415.1| hypothetical protein HMPREF0791_0496 + Term 18247 - 18290 1.3 26 10 Op 1 4/0.000 + CDS 18604 - 19059 402 ## COG4506 Uncharacterized protein conserved in bacteria 27 10 Op 2 . + CDS 19056 - 20717 2010 ## COG0018 Arginyl-tRNA synthetase Predicted protein(s) >gi|224999923|gb|ACJC01000077.1| GENE 1 1 - 517 579 172 aa, chain - ## HITS:1 COG:TM0964 KEGG:ns NR:ns ## COG: TM0964 COG1641 # Protein_GI_number: 15643724 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Thermotoga maritima # 3 172 2 183 402 134 41.0 7e-32 MTKALYLDCHAGIAGDMLLSALVDLGAHPEDIESELKKLPLDQFKLHFQKRVKQGIHAMT LNIDVKESNHHRHVNDIFKMIDDSTLPERVKYRSKKIFEIIGQAEAKIHGMSFEEVHFHE VGAMDSIIDIIGGCIALEQLGINTLYCSAIPTGHGKIHIAHGIYPIPAPATA >gi|224999923|gb|ACJC01000077.1| GENE 2 514 - 1290 690 258 aa, chain - ## HITS:1 COG:CAC0776 KEGG:ns NR:ns ## COG: CAC0776 COG1691 # Protein_GI_number: 15894063 # Func_class: R General function prediction only # Function: NCAIR mutase (PurE)-related proteins # Organism: Clostridium acetobutylicum # 8 245 6 245 248 222 49.0 7e-58 MSHSYNSIEEVLKAVKSNQLSINDAKAQLSHYDELGFAKIDLHRAQRQGFPEVIFGQGKT KEQITKIISSLIFHNEVILVTRVDEMKAKYILQHYPKLEYHQTAQLISTPLNDIPQSKYY VSVLCAGTSDLPIAEEAALTAEIMGVSVKRFYDVGVSGIHRLLSNIHDIRKGKVSIVIAG MEGALASVVGGLVNHPIYAVPTSIGYGANLNGVTTLLSMINSCAPGTSVLNINNGFGGGY NAAQIIHMLENKESEVSL >gi|224999923|gb|ACJC01000077.1| GENE 3 1305 - 2132 1029 275 aa, chain - ## HITS:1 COG:alr1286 KEGG:ns NR:ns ## COG: alr1286 COG1606 # Protein_GI_number: 17228781 # Func_class: R General function prediction only # Function: ATP-utilizing enzymes of the PP-loop superfamily # Organism: Nostoc sp. PCC 7120 # 4 275 2 274 275 189 37.0 5e-48 MTELNTKEMKLDALLKDMQSVVIAFSGGVDSSLLLKKAIDVLGVNYVKPVVVKSELFRNE EFELALKLGQSLGVEVLETEMSELQDANIVKNTPESWYYSKRLMYSQLENIKNKLGFNYV LDGMIMDDLDDFRPGLKARDDFGVRSVLQEAKLYKSEVRELSHQHDLPVWNKPALCSLAS RIPYGEELSFTKVNKVNEAEKFILSLGINHVRVRYHHNIARIEVTEDQLTNLLKLKDSII LHLKELGFDYVTMDLEGYRTGSMNEIIDTKSTSFK >gi|224999923|gb|ACJC01000077.1| GENE 4 2152 - 3426 1272 424 aa, chain - ## HITS:1 COG:CAC0769 KEGG:ns NR:ns ## COG: CAC0769 COG3875 # Protein_GI_number: 15894056 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 40 413 45 420 426 233 37.0 8e-61 MKVKSQVLYGKSEIEINVPDDSTIIEPQNINAIQDYESAIKNVLRNPTNSKSLKEMVNSN DIVSIVISDITRPTPNHILVPLLIEELNHVPRENFVIINGTGTHRDQTRDELIQMLGEDI VNSVKIVHNHCSEKESLAKVGHSQYGCDVYLNKAYVESDFKIVTGFIEPHFFAGFSGGPK GIMPGIAGLETIQTFHNAKMIGDSRSTWGNLEDNPVQDMAREVNRMCKPDFLLNVALNKS KEITAAFAGEIFDTHKEGCAYVKEHAMFKCDQHFDIVIASNSGYPLDQNLYQTVKGMSAA SKIVKKDGHIIMVSECADGFPDHGKFAEIFKMADTPQGILELIHDPNFKEVDQWQVQKQA SIQTFANVHVYSELTDQQLKDSMLIPTSNIEHTIQELEHRYGRKLTIGVMPQGPLTIPYV EDKE >gi|224999923|gb|ACJC01000077.1| GENE 5 3709 - 4731 1496 340 aa, chain + ## HITS:1 COG:SA0562 KEGG:ns NR:ns ## COG: SA0562 COG1064 # Protein_GI_number: 15926283 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Staphylococcus aureus N315 # 1 334 1 334 336 574 87.0 1e-164 MKAAVVTKDHRVSIEEKRLRELKPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTLGHEG IGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVDGAMAEE VIVDANYAVKVPENLDPAAASSITCAGVTTYKAVKVSGIEPGQWLGVFGVGGLGNLALQY AKNVMGAKVVAFDINDDKLNFAKELGADAIINSTNVDPIEEVNRLTNNKGLDATVITAVA KTPFNQAVDVVKAGARVVAVGLPVDKMDLDIPRLVLDGIEVVGSLVGTRQDLREAFQFAA ENKVIPKVQLRQLSEINDIFDEMEKGTITGRMVIDMKSSH >gi|224999923|gb|ACJC01000077.1| GENE 6 4814 - 5206 412 130 aa, chain + ## HITS:1 COG:no KEGG:SERP0258 NR:ns ## KEGG: SERP0258 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 130 1 130 130 207 100.0 9e-53 MQFKLKEDKILEFLDLNFPQQTFEKGRLLIGQNKRQPLHVYYFGEKFLALLNVNFNTFEY IKVDEVDYNDIKKITLKDGLLFKKMFIETEDFMFNYSTSKALLSDFQNNNFNHFIQNKKE RVIFEDGHFI >gi|224999923|gb|ACJC01000077.1| GENE 7 5536 - 5973 179 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242241951|ref|ZP_04796396.1| ## NR: gi|242241951|ref|ZP_04796396.1| hypothetical protein HMPREF0791_0477 [Staphylococcus epidermidis W23144] # 1 145 8 152 152 235 100.0 6e-61 MLENPMSWIKIYYEKIHGFVHKFFNLPSINYSDLDFKSLLIELITFVLTLIIMFLIPYIF LFVVGFTLDVLLKKHYSKKNFYKKNDVWVNKSNNVEHIKRYYFIWQRNRLKELRKYSIQK ANNDRSIFEWSFFPFVKNIKTYINK >gi|224999923|gb|ACJC01000077.1| GENE 8 5991 - 7208 1075 405 aa, chain - ## HITS:1 COG:L102735 KEGG:ns NR:ns ## COG: L102735 COG0582 # Protein_GI_number: 15672485 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 1 401 1 380 382 174 32.0 4e-43 MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEAKIN DKAPIDLKTLTFHQACDEWLDRYVKTSGSKQSTIKTKKYKIKHIKRNINSDILVKNMNSD VVQKLVDDSVKDNLSHKVVKDAMSIIRNIMKYIQRKYKLTDISYLDDIVIPKKATTREEV KAKRENYLEMDEVKSIVDNLHEIANSKRAGYTKRSFIMTAYIMEFQALNGMRIGELLAIQ PNNIDFDKKTLEIDGTIHWRNEGNAVGFKDTTKTESSYRTISLTTRSCDILRKVMLENKK AIQWESMYQDRGFIFTNYRGNPMSLSTINRNMQQSANNVGIRKHITSHTMRHSHISLLSQ LGISLKAIMERVGHTDHKTTLQIYSHVTEQMDKDMMNKLEKVGNE >gi|224999923|gb|ACJC01000077.1| GENE 9 7251 - 7652 551 133 aa, chain - ## HITS:1 COG:no KEGG:SACOL0888 NR:ns ## KEGG: SACOL0888 # Name: not_defined # Def: pathogenicity island, lipoprotein, putative # Organism: S.aureus_COL # Pathway: not_defined # 1 132 1 142 143 134 56.0 1e-30 MKKFLILLLSSLLVLAACGKNYEISDITNKFKKEGLSVENLRKMEREDFGMAPMKTENAK IFTVSYGKNARILKFKNEDDLKEMKKYYEELGKSSAAFYSHVYTKDKFLIQMNGDIDDHV FENYKKAMNEALD >gi|224999923|gb|ACJC01000077.1| GENE 10 7791 - 8582 695 263 aa, chain - ## HITS:1 COG:L7043 KEGG:ns NR:ns ## COG: L7043 COG1396 # Protein_GI_number: 15673929 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 82 1 74 235 60 40.0 5e-09 MDIDKLEVGKRIKNIRLNKSKNLREFGELISKNLKEDKNISDSIVSRWEKGVSIPSAKRL KEIADIGNVSVNYLLYGVKVTYKDIHNNINTVSMKNEIMDNLERFLKYYLLYSEYNNYSI KTAELLDLLFENAGYDITTLTKDLCALVSDKRFSFYQHGVYLLLNEDFSKLHVQLYLSEF IYNLLVQITLDYPNIYIKNLVLQITETKERIKDISHKKDAYTEFEIETHLADFINHKEYK KLLDNLSQLEKKITNDNSLIDNN >gi|224999923|gb|ACJC01000077.1| GENE 11 8717 - 8920 268 67 aa, chain + ## HITS:1 COG:L6724 KEGG:ns NR:ns ## COG: L6724 COG1476 # Protein_GI_number: 15673928 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 2 66 5 68 68 58 58.0 3e-09 MNKVLGYRKMLGKTQQQMAKELNISEQSYRNREKGKINFKKNEMIKFKIMLLEKGLKDIT LDDIFFS >gi|224999923|gb|ACJC01000077.1| GENE 12 8956 - 9228 281 90 aa, chain + ## HITS:1 COG:no KEGG:SAR0369 NR:ns ## KEGG: SAR0369 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 90 1 90 90 130 72.0 1e-29 MQYVNLQNLPTKENVVTEPNQIVVKPIMAKPNVIAKLFGISYSSVRRILIEWEKDHKGID DLYYSLSSTMTVISISRFEQYMKKRHKDWM >gi|224999923|gb|ACJC01000077.1| GENE 13 9244 - 9399 92 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241957|ref|ZP_04796402.1| ## NR: gi|242241957|ref|ZP_04796402.1| hypothetical protein HMPREF0791_0483 [Staphylococcus epidermidis W23144] # 1 51 1 51 51 79 100.0 6e-14 MRLYILISILAITIGCLYAYSIDFIHGIAITALIQTLTLPIVDKYECKGDK >gi|224999923|gb|ACJC01000077.1| GENE 14 9401 - 9610 357 69 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241958|ref|ZP_04796403.1| ## NR: gi|242241958|ref|ZP_04796403.1| hypothetical mobile element-associated protein [Staphylococcus epidermidis W23144] # 1 59 12 70 80 77 100.0 3e-13 MEQEQLKVIEEIYDMLESAINDKRTEYAHTISDGNKEWKETLNREEQLQFVCEVVLQQIE NNFEFEEEK >gi|224999923|gb|ACJC01000077.1| GENE 15 9615 - 9956 456 113 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241959|ref|ZP_04796404.1| ## NR: gi|242241959|ref|ZP_04796404.1| hypothetical protein HMPREF0791_0485 [Staphylococcus epidermidis W23144] # 1 113 1 113 113 176 100.0 5e-43 MSNLKQNIKQMKNEVIEAELNTKINTVITMIGEHMDSNERFRSHLDAQGKVMESYMLKEY YQNYYVLMAVLNSILKDVNFMNDEITTFHDRALDELDKTNASSENFGEESLNA >gi|224999923|gb|ACJC01000077.1| GENE 16 10048 - 10920 586 290 aa, chain + ## HITS:1 COG:no KEGG:SH2094 NR:ns ## KEGG: SH2094 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 288 1 289 289 394 68.0 1e-108 MKEINLEYDTQVSVIWYETLDSRSFKQFSQPKWSELINRLSIPQNNTNKYARGVAVYGDI KDDTDEKGNKYKKYRKDENVIYRDVITLDYDDIPKLRPLLDAITNTLKGVAWFWHTTFNH QTESPRIRLYIALNECISADDYRKYTKVLANKIGHQVDEGSFQPSRAMALPVYQKDKYPF LHQYNDAPILNVEMLEKWSKETYMQKDQPNLTNFNKRDDTYWRDISFSVAKGNRNNSLAS LIGHLFSRHVNEYIIYSYALLWGQNACNPPLKEREINATFQSILKKHRNK >gi|224999923|gb|ACJC01000077.1| GENE 17 10935 - 12635 1259 566 aa, chain + ## HITS:1 COG:SA1828 KEGG:ns NR:ns ## COG: SA1828 COG5519 # Protein_GI_number: 15927596 # Func_class: L Replication, recombination and repair # Function: Superfamily II helicase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 565 1 565 569 901 83.0 0 MELTKNDILHEIEKTKQEKDAIQEVIPKGYEIEQHQNGVSLYQIIPSKKEGEPDKKIFIT NTIPQITERFEDIESNEVSYNMLFYDNQIPVNLGVSAEEIADSRQLLKLVNRKFDVTSTT STRLVDYINKSKRYNPPVNVNVATRLGHVKGYFIYPYQEELKNSNIKLFNNDRGFQKLID SFQSKGTLESYSKHVFNQIKDLPMVMVMLYASLGSVLLREFGLQPFIVEISGSTSTGKTF TLNLVSSVWGTSDLITTWGSTKNSIEAMASFLNSFPMFKDDTRNTNPKFVANATYNFSSG ESKSRSNINLTLNAKKEWRNIMLSTGEASISNMADEKAGVSARVITLQDQPYPDNFDFTT LDKAFRENYGTLGIAFIKQYESKQEEYKSAFESYQRYFNQKGSNEIMQRLGRSFALLQVA GEVLNDINGFEHDHFKIIEQAYYSMVRNNKTIDKPKQLLEELLQYLDANRNNIAGDGYSS VKNGDIKAIYKRDYLCIIGQTVHEKLGHEMQTITGQWDKKGYLITSKDRIQKEVRFNSQK NRGYAIKNEVVKELGFDFSNSHNPYN >gi|224999923|gb|ACJC01000077.1| GENE 18 12946 - 13464 453 172 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241962|ref|ZP_04796407.1| ## NR: gi|242241962|ref|ZP_04796407.1| hypothetical mobile element-associated protein [Staphylococcus epidermidis W23144] # 1 172 18 189 189 334 100.0 1e-90 MTTITEQGYQQFKMLSNNVMFRKHVKDSQDEITKILMSLLMYAPTKAHKTMLSRVLLLRD KYYLYISGGSLHLFTRDFKSAISFNVKQPNPKHIDYFTDDWIVEIDNLNSLKKGYGNQLM NEVLQITSVMKVDICLWTETISNTRYFEKYGFESIGKRGRAKENLMIKRKEA >gi|224999923|gb|ACJC01000077.1| GENE 19 13469 - 14110 623 213 aa, chain + ## HITS:1 COG:no KEGG:SAV0794 NR:ns ## KEGG: SAV0794 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 213 1 213 213 336 81.0 3e-91 MNIEIIANQFETRAGTLLRYYTGLLESSRDNHFAFKIYNDPFDMVYVMMNEKLFGHVYIK DCNVRQSFELASPKHTEGLIRSIEGHYAGYEIPDGTHDTISDMMASFMFDNDYFMYGLET FAESNNTDMFEYMEKDFGVDELEGIQSSNADVIGNIEMLYQLATGINEPAPELVEGLKLV TGFVQDEHATQDDYKALERKLNELKESYYSVSK >gi|224999923|gb|ACJC01000077.1| GENE 20 14450 - 14788 470 112 aa, chain + ## HITS:1 COG:no KEGG:SAB0354 NR:ns ## KEGG: SAB0354 # Name: not_defined # Def: pathogenicity island protein # Organism: S.aureus_RF122 # Pathway: not_defined # 11 112 12 113 113 102 49.0 5e-21 MVDTLNKNQSVPNEYLRVYDIIQNSNEKYVTKTKILNQLGYPLNKANDRWLTQVITSLII NYQYPVGYSYKKDSRGYFIIRNEDDKKQAIYSVKRQMLGTQARLDVLQKLSV >gi|224999923|gb|ACJC01000077.1| GENE 21 14801 - 15334 415 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241965|ref|ZP_04796410.1| ## NR: gi|242241965|ref|ZP_04796410.1| SaPI1 ORF5 family protein [Staphylococcus epidermidis W23144] # 1 177 1 177 177 267 100.0 2e-70 MGVGQRYAVIQLKTKYNAAFLKSEFDKWEQRIEDMYALHYPRMFIDPYTMQLSYESNHIE DLALSIIEEREKLEKFKHKSNHDLKKFNIMLSNYSESEQRQIKRYQRDDVLADESLILRI CEDISNIDSKDKNNRNIAIQEEIKADKKRRRAEGKARKERIKARMKRERQEKLLQAN >gi|224999923|gb|ACJC01000077.1| GENE 22 15354 - 16022 984 222 aa, chain + ## HITS:1 COG:no KEGG:SAR0379 NR:ns ## KEGG: SAR0379 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 14 214 11 210 217 105 30.0 2e-21 MTTTTYQGTSQDVWSVLFDNRKYKDLLDEVNKLIEDTKRLYKQGYRLEAIDEQQKPKVTE LENKFKQFATDRLNEIEQRCNEIEKESQQDNVKDPQTEIIKRQNLEARLSFYNDSEIVDY INSKDVTNTDIYELSLLQQKYDNQLNESQQRQVAFKLEELKQGVLYPYTTNEEYKNLMFE YSVINQTGMAKTGVVITKNEQYGGVEIKPLTERYKNAIDEVK >gi|224999923|gb|ACJC01000077.1| GENE 23 16100 - 16582 491 160 aa, chain + ## HITS:1 COG:SA1820 KEGG:ns NR:ns ## COG: SA1820 COG3728 # Protein_GI_number: 15927588 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Staphylococcus aureus N315 # 1 159 1 158 189 197 63.0 5e-51 MDKLTPKQERFANEYIKTLNVTQSAIKAGYSPNSAHVTGSRLLRKEKVDEYIKSKKDEIM DDTILSAKETLYLLTQSAIGDETETKEVVVKKSSFERNPDTGRMNLVYNEHVELVEVPIK ASDRLKARDLLGRFHSIFTDKVDVSMVAPTFIDNIGRFEE >gi|224999923|gb|ACJC01000077.1| GENE 24 17179 - 17499 240 106 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241969|ref|ZP_04796414.1| ## NR: gi|242241969|ref|ZP_04796414.1| hypothetical protein HMPREF0791_0495 [Staphylococcus epidermidis W23144] # 1 106 1 106 106 159 100.0 8e-38 MYELTDNYNAKKYWFEYNAQYAIRLISTLNDYLYRYINLVNQFEIKPKTTFKNDVVKKLK EYKKRSVVVALRKNSDLLDKYRNDITHNYNVFINGALKVTKKIQNL >gi|224999923|gb|ACJC01000077.1| GENE 25 17633 - 18205 421 190 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242241970|ref|ZP_04796415.1| ## NR: gi|242241970|ref|ZP_04796415.1| hypothetical protein HMPREF0791_0496 [Staphylococcus epidermidis W23144] # 1 190 1 190 190 332 100.0 1e-89 MNEILTIVSSGAFAALVTGVLNVRNTNKTVHAQVVAKARHDWIQEVRNLMSEYLSEIEDI KYNINREYQTNGNSFSLPVINQSNDKFKSLPILKNKISLHFGQTKTYRTWWFFEKTKKDE NNIHFNELMDKVNNDMESYINLVFKLIDNGSVSKKDMDLAYDKVTMSLYLLNGETSNYLK SEWYKTKKMK >gi|224999923|gb|ACJC01000077.1| GENE 26 18604 - 19059 402 151 aa, chain + ## HITS:1 COG:SA0563 KEGG:ns NR:ns ## COG: SA0563 COG4506 # Protein_GI_number: 15926284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 10 151 1 142 142 191 73.0 3e-49 MTFIIVRVKVSSKLNKNINIQTHQVLKQNGEKQRFEFTTKGFWQQKFADFIRYEEQIEDA KVNVTIKIEDTGVKLIRKGDINMNLHFVEGHETTTLYDVPAGKIPLTVKTLSLKHFVTHN GGKLKIHYELYQDEQKMGSYQYEINYKEISE >gi|224999923|gb|ACJC01000077.1| GENE 27 19056 - 20717 2010 553 aa, chain + ## HITS:1 COG:SA0564 KEGG:ns NR:ns ## COG: SA0564 COG0018 # Protein_GI_number: 15926285 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 553 1 553 553 915 84.0 0 MSIIDQVKQTLIEEIEVSIRKANLAEDIPEIKIEIPKDPKNGDYSSNIAMVLTKIAKRNP REIAQAIVDHLDTSKAHVKQVDIAGPGFINFYLDNQYLTAIIPEAITKGDRFGYATQSKN TNILLEYVSANPTGDLHIGHARNAAVGDSLANILIAAGYNVTREYYINDAGNQITNLARS IEARYFEALGDTSYEMPADGYNGKDIIEIGKDLAVKHPEIKDYTDEERLKTFRQLGVDYE MEKLKKDLSDFNVHFDNWFSETSLYENGAIENTLSKMKELGYTYEADGATWLRTSDFKDD KDRVLIKKDGNYTYFTPDTAYHYNKINRGNDILIDLMGADHHGYINRLKASLETFGVDSD RLEIQIMQMVRLMQNGEEVKMSKRTGNAITLREIMDEVGIDAARYFLTMRSPDSHFDFDL ELAKEQSQDNPIYYAQYAHARICSILKQAKEQGIEVSTDADFSKINNDKAIDLLKKVAEF ESTIESAAEHRAPHRLTNYIQDLAAAFHKFYNAEKVLTDDTEKTKAYVAMIEAVRITLHN ALALVGVTAPESM Prediction of potential genes in microbial genomes Time: Sun May 29 07:32:30 2011 Seq name: gi|224999922|gb|ACJC01000078.1| Staphylococcus epidermidis W23144 contig00118, whole genome shotgun sequence Length of sequence - 1728 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 31 - 90 5.2 1 1 Op 1 . + CDS 147 - 827 484 ## COG2231 Uncharacterized protein related to Endonuclease III 2 1 Op 2 . + CDS 882 - 1634 588 ## COG0789 Predicted transcriptional regulators + Term 1644 - 1685 7.1 Predicted protein(s) >gi|224999922|gb|ACJC01000078.1| GENE 1 147 - 827 484 226 aa, chain + ## HITS:1 COG:SA0565 KEGG:ns NR:ns ## COG: SA0565 COG2231 # Protein_GI_number: 15926286 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Staphylococcus aureus N315 # 16 226 1 211 211 263 61.0 2e-70 MRDKIIIRSFAGEEIMLSIEKLYQILYQNMGPQYWWPAETPIEMMLGAILVQNTNWNNAD IALSRLKEETSFNAQTILKMPLESLQQVIRSSGFYKNKAKAIQALLLWLNEHHFDYSSIA KLYSDNLRKELLTIRGIGEETADVLIVYIFKGKEFIPDSYTRRIFRKLGYQHTESYHQLK QELTLPESFSNQDANEFHALLDNFGKNYFNGKGKQRYTFLDTYFKK >gi|224999922|gb|ACJC01000078.1| GENE 2 882 - 1634 588 250 aa, chain + ## HITS:1 COG:CAC3475 KEGG:ns NR:ns ## COG: CAC3475 COG0789 # Protein_GI_number: 15896713 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Clostridium acetobutylicum # 10 247 6 240 243 98 30.0 1e-20 MKERFSPKMLSDITGVSIRTLHYYHEKGLLVPQQMSANGYRYYNVQDISKLQYILFLKEL DLTLKQIQIYFEGDSDFRTKILHDNFYHIVKKRDRLNDIICTLEHHFHQDNEEIEVTTMQ NFNLNEQYEKEAASKYGDTHYYQAYKDKQKSKDESEQQNHFEEINKQLNMFFDDMNQLYL NKVSILEASGKIKKLLCILKEQVPNCDNQFLEYIAQIYIEDERFVKFINKQRERGLNLYI SDAIKTFIKL Prediction of potential genes in microbial genomes Time: Sun May 29 07:32:41 2011 Seq name: gi|224999921|gb|ACJC01000079.1| Staphylococcus epidermidis W23144 contig00119, whole genome shotgun sequence Length of sequence - 37183 bp Number of predicted genes - 38, with homology - 35 Number of transcription units - 25, operones - 5 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 38 - 97 7.3 1 1 Op 1 33/0.000 + CDS 144 - 1031 903 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component + Term 1109 - 1146 5.5 + Prom 1101 - 1160 4.6 2 1 Op 2 1/0.800 + CDS 1230 - 2252 901 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 3 1 Op 3 1/0.800 + CDS 2311 - 3039 706 ## COG1011 Predicted hydrolase (HAD superfamily) 4 1 Op 4 . + CDS 3017 - 3814 876 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Prom 3909 - 3968 6.9 5 2 Tu 1 . + CDS 4019 - 4528 668 ## SERP0270 hypothetical protein + Term 4574 - 4641 12.1 + Prom 4650 - 4709 9.9 6 3 Tu 1 . + CDS 4773 - 5492 633 ## SERP0272 hypothetical protein + Term 5507 - 5550 7.1 + Prom 5615 - 5674 9.2 7 4 Tu 1 . + CDS 5700 - 6476 858 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) + Term 6499 - 6547 8.1 - Term 6581 - 6638 5.3 8 5 Tu 1 . - CDS 6649 - 7023 556 ## COG1846 Transcriptional regulators - Prom 7236 - 7295 12.2 9 6 Tu 1 . - CDS 7435 - 8388 541 ## SE0391 hypothetical protein - Prom 8448 - 8507 13.9 - Term 8597 - 8639 9.4 10 7 Tu 1 . - CDS 8714 - 9607 872 ## COG3238 Uncharacterized protein conserved in bacteria - Prom 9671 - 9730 8.6 - Term 9816 - 9864 8.4 11 8 Op 1 . - CDS 10008 - 10232 344 ## SERP0279 hypothetical protein 12 8 Op 2 . - CDS 10248 - 10454 269 ## SERP0280 hypothetical protein - Prom 10697 - 10756 7.8 13 9 Tu 1 . - CDS 10770 - 10937 62 ## - Prom 10990 - 11049 9.0 + Prom 11080 - 11139 4.7 14 10 Op 1 7/0.000 + CDS 11160 - 13562 2238 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 15 10 Op 2 16/0.000 + CDS 13549 - 13974 444 ## COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit 16 10 Op 3 21/0.000 + CDS 13971 - 14315 391 ## COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit 17 10 Op 4 12/0.000 + CDS 14308 - 15807 1143 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 18 10 Op 5 15/0.000 + CDS 15804 - 16286 134 ## COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit 19 10 Op 6 16/0.000 + CDS 16283 - 16585 257 ## COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit 20 10 Op 7 1/0.800 + CDS 16560 - 17024 458 ## COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit + Term 17036 - 17097 1.4 + Prom 17491 - 17550 2.8 21 11 Tu 1 . + CDS 17575 - 19503 1573 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 19530 - 19583 8.2 22 12 Op 1 12/0.000 - CDS 20238 - 21167 1079 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin 23 12 Op 2 42/0.000 - CDS 21164 - 22000 604 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 24 12 Op 3 . - CDS 22001 - 22747 169 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 22790 - 22849 6.1 + Prom 22747 - 22806 10.8 25 13 Tu 1 . + CDS 22867 - 23511 653 ## COG1321 Mn-dependent transcriptional regulator + Term 23524 - 23559 3.4 - Term 23511 - 23545 3.2 26 14 Tu 1 . - CDS 23675 - 24421 433 ## SERP0294 hypothetical protein - Prom 24567 - 24626 8.3 + Prom 24399 - 24458 7.3 27 15 Tu 1 . + CDS 24559 - 25353 765 ## COG1922 Teichoic acid biosynthesis proteins - Term 25201 - 25247 1.8 28 16 Tu 1 . - CDS 25431 - 26225 754 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component - Prom 26249 - 26308 10.0 29 17 Tu 1 . + CDS 26556 - 27368 471 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component + Term 27522 - 27576 11.6 + Prom 27611 - 27670 10.7 30 18 Op 1 5/0.000 + CDS 27788 - 28783 741 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC 31 18 Op 2 1/0.800 + CDS 28783 - 29847 948 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 29856 - 29894 -0.9 + Prom 29877 - 29936 5.6 32 19 Tu 1 . + CDS 29982 - 30380 458 ## COG0615 Cytidylyltransferase + Term 30525 - 30574 9.2 33 20 Tu 1 . - CDS 31022 - 31198 87 ## - Prom 31338 - 31397 4.8 + Prom 31202 - 31261 5.5 34 21 Tu 1 . + CDS 31367 - 33094 173 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Term 33014 - 33053 1.6 35 22 Tu 1 . - CDS 33097 - 33285 102 ## - Prom 33481 - 33540 9.4 + Prom 33138 - 33197 8.4 36 23 Tu 1 . + CDS 33341 - 34609 1365 ## COG1972 Nucleoside permease + Term 34639 - 34692 2.5 + Prom 34971 - 35030 7.8 37 24 Tu 1 . + CDS 35147 - 35980 787 ## COG1284 Uncharacterized conserved protein + Term 36038 - 36091 9.9 + Prom 36161 - 36220 9.2 38 25 Tu 1 . + CDS 36339 - 37136 273 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 Predicted protein(s) >gi|224999921|gb|ACJC01000079.1| GENE 1 144 - 1031 903 295 aa, chain + ## HITS:1 COG:SA0566 KEGG:ns NR:ns ## COG: SA0566 COG0614 # Protein_GI_number: 15926287 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 295 1 295 295 380 70.0 1e-105 MKSKLWIVICALIVVLAACSQDANHSSNNKDTEKSDKKYHRIVSLIPSNTEILYRLGIGE DIVGVSTVDDYPKDVKKGKKQFDAMNLNKEELIKAKPDLILAHESQKNSAGKVLKSLKDK GVKVVYVKDAQSIDETYDTFKSIGKLTDREKQAKELVDETKHNVDKIINSIPKHHKKQEV FMEVSSKPDIYTAGKDTFFNDMLEKLDAKNSFDDVKGWKSVSKESIIKRNPDILISTEGK SKSDYIEMIKKRGGFDKINAVKNTRIETVDGDEVSRPGPRIDEGLKDLKDEIYKK >gi|224999921|gb|ACJC01000079.1| GENE 2 1230 - 2252 901 340 aa, chain + ## HITS:1 COG:SA0567 KEGG:ns NR:ns ## COG: SA0567 COG0609 # Protein_GI_number: 15926288 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 27 338 1 312 316 301 59.0 2e-81 MEDSRFTLFKYCFVNIVIKKVLKERVMNKYRSVIIWLFILILSMSLSLCWDVGKLDDVFN QTILFQVRLPRLLEAMLTGAVLTLAGQVYQIVLNNPLADSFTLGLASGASLGSGIALFLG LSFLWFPIFSIIFSLITLLLVLSVSAMLAKGYPVQMLILTGLLLGALLNALLYLLVLINP KKMNPIASYLFGGFSSAEYQDVMIISMIASVAIIVLFLMQKGIKLLQVGELKSQSLGLNV QQVTYIVLIVASIMTAVVVAYVGVIGFIGMIIPQLIRKFYWRYQIGLQMLLNIIIGAVVM IMADFIGSTMIQPIQIPVGIVMALLGVPVLFYILVKQTNI >gi|224999921|gb|ACJC01000079.1| GENE 3 2311 - 3039 706 242 aa, chain + ## HITS:1 COG:SA0568 KEGG:ns NR:ns ## COG: SA0568 COG1011 # Protein_GI_number: 15926289 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Staphylococcus aureus N315 # 1 233 1 233 239 368 85.0 1e-102 MNLNCIKAIVFDLEGTLLDRVKSREKFIEEQYERFHDYFIHVQLADYKNKFIELDDDEDN DKPDLYKEIIKQFHIDRLKWRDLFNDFEMHFYRYVFPYYDTLYTLEKLSKHHYMIGVIAN GKSKIKQFRLHSLGIMHVINYLTTSETVGYRKPHPKIFEDMIDQLGVKPSEIMYVGDDAL NDVAPARAMGMVSVWYKQEDAELEPLTEEVDYTITTIEELLKILPDNFETEGEEQHGNGF NY >gi|224999921|gb|ACJC01000079.1| GENE 4 3017 - 3814 876 265 aa, chain + ## HITS:1 COG:SA0569 KEGG:ns NR:ns ## COG: SA0569 COG0596 # Protein_GI_number: 15926290 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Staphylococcus aureus N315 # 3 262 1 260 266 362 68.0 1e-100 MAMDLITKQDGTTLHYSTMGQGYPVVLVHTAFDNYAVFNDLAKVLAKSFQVVLIDLRGHG YSDKPRNIEFYDFADDIKFLLDAIYIDEAAFIGHEMGALIAADMSVRNPGYVSSIILVNP TSIEGELPEERLFRKYAHKIRNWEDDKQEKFLDKRRYYKARKMNKFLKHVVDTNSISTKE EIQAVKDVFKSEGIADVFKHVQVPTLIVAGEHGERTTTLEAKEVADLIQHSEFNVYQHSS VYPFVEEQAQFTQESTNFIHQYAPK >gi|224999921|gb|ACJC01000079.1| GENE 5 4019 - 4528 668 169 aa, chain + ## HITS:1 COG:no KEGG:SERP0270 NR:ns ## KEGG: SERP0270 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 169 1 169 169 251 100.0 6e-66 MKKLITSLLVLGLVLTGVSVGNNVEAATGNSMKTVQQLNKGDKSLENVKIGESMKSVLKK YSHPIYSYNPNSNEKYYEFRTDKGVLLVTANGKKERGNVTRVSMTYNNANGPSYKAVKQQ LGHKAISRVHYNNVTGNFGYIQKGQASYQFSSNSPKDKNVKLYRIDLNK >gi|224999921|gb|ACJC01000079.1| GENE 6 4773 - 5492 633 239 aa, chain + ## HITS:1 COG:no KEGG:SERP0272 NR:ns ## KEGG: SERP0272 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 239 1 239 239 377 100.0 1e-103 MRTNDKVLLENINDYFSHKGMSPHLIDDIKEKYRQDIKKSEEKDQDYIEYRGKSPAQLIL TIQRNLFALQLNPMIFFIINFILISYLYDKQYVPFQAITGISLFYCLVIFPITLILYVRI AKKNYLYSNKYEMRTGIIIGIIALILVIMQGFHFNWAIIPISIYGHQFVFFAGIILSLVG IFFKRIEFVGVGLLFCQKTIDAMVTNPEIAQFFSLAIWIILVVLIIFYTIRLSARTKSS >gi|224999921|gb|ACJC01000079.1| GENE 7 5700 - 6476 858 258 aa, chain + ## HITS:1 COG:SA0572 KEGG:ns NR:ns ## COG: SA0572 COG0596 # Protein_GI_number: 15926293 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Staphylococcus aureus N315 # 1 257 1 258 262 291 53.0 9e-79 MNKIQICNQIELNYIDEGEGIPIILIHGLDGNLAGFKDLKNELKKQYRVITYDVRGHGKS SRTESYELKDHVEDLNDLMRALNIDSAHILGHDMGGIIASEFTEKYQYKVITLTIVSAKS EDIANGFNKLMVDYQEELAGFNKSEAMIILFSKLFKEKDKAMKWYQSQKLYNRPTPEESA IAVRALLNIKDLTRVHHNVSIPTLIVNGKYDPLIQNKSHYDMDQYYDQVTKIVFDNSGHA PHIEEPEKFLKLYLDFVS >gi|224999921|gb|ACJC01000079.1| GENE 8 6649 - 7023 556 124 aa, chain - ## HITS:1 COG:SA0573 KEGG:ns NR:ns ## COG: SA0573 COG1846 # Protein_GI_number: 15926294 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 124 1 124 124 167 84.0 4e-42 MAISKINDCFELLAMVTYADRLKGIIKKEFSISFEEFAVLTYISENKEDEYYLKDIINHL NYKQPQVVKAVKNLSQENYFNKKRNEHDERTVLILVDSKQRKKIDDLLKRVNNRIKEANN ENEV >gi|224999921|gb|ACJC01000079.1| GENE 9 7435 - 8388 541 317 aa, chain - ## HITS:1 COG:no KEGG:SE0391 NR:ns ## KEGG: SE0391 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 317 1 317 317 468 94.0 1e-130 MTKQRIVISSLLFIFIVTTCSFGYITFSKLTSETEDIKNIKTIKAKPKILLSTTGIQTPL NSYTFYYTPTLGQLQKLLVKNHSKVSKNAPVLEYYNYEKDHLYKQLQNTLSNERNNKTFN SKNDLHYYSFNNQLKLQMIQTKSSIKSTLFSPINGNISYINSIPSKPNEKILQINSDERI IRANISESELNLLKINQNISVTSSDHTQFTSKIKEISNIPSKIKNGVSYYDISLSTQPNY RIGTHFKIKLASNDIELPTTAIIQKRYVLILKNGKIKKREVTYKKSLKSGYINITKGLLI DEKVVKNPTSKLINIYI >gi|224999921|gb|ACJC01000079.1| GENE 10 8714 - 9607 872 297 aa, chain - ## HITS:1 COG:SA0574 KEGG:ns NR:ns ## COG: SA0574 COG3238 # Protein_GI_number: 15926295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 297 13 309 309 303 64.0 2e-82 MLLPIQTSINSRLSQFTRSSFYASTISFAVGTICLLVLNLIVHPQVLTPEFFSKQTLNYT WVLGGLLGVIYLTGNLLLLPRLGAALTVVITVTGQIIMGVIIDTFGLLGAHQQSFTIFKG VGIIFLITGIIFMNYVRRHPVNRHKNTPIVFWLLIGFVFGFAPPIQTTINSTLAQHTHSS IFASLISFSVGTIALFILTLVFNRSLKISSTHKTLGKIKPIYFIGGILGMAFVTSNIILM PFLGAALTTIIAMMGQMIMGIIIDHFGLLGSPKNKITSRKLGGLLCIAIGIILLRLF >gi|224999921|gb|ACJC01000079.1| GENE 11 10008 - 10232 344 74 aa, chain - ## HITS:1 COG:no KEGG:SERP0279 NR:ns ## KEGG: SERP0279 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 74 1 74 74 115 98.0 3e-25 MSKTLELIFKSNLNKPVKLLLPDFNAITTEQLIKESMNQLLELDILRFSLGKPVKIYAAQ LIDKSTTVIFEDKN >gi|224999921|gb|ACJC01000079.1| GENE 12 10248 - 10454 269 68 aa, chain - ## HITS:1 COG:no KEGG:SERP0280 NR:ns ## KEGG: SERP0280 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 68 1 68 68 100 100.0 2e-20 MNEVNQVTIIFTQIKHNSEGKVVEHKRRFSNINPLVSNDQIKSFRSIIERISGEEYDKVE IVKTESLI >gi|224999921|gb|ACJC01000079.1| GENE 13 10770 - 10937 62 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIYDLILIVDLNAFIEHTLIQALTRSPYMVISQKVTYSYLYPKGNKTFIYIRKNP >gi|224999921|gb|ACJC01000079.1| GENE 14 11160 - 13562 2238 800 aa, chain + ## HITS:1 COG:SA0578_1 KEGG:ns NR:ns ## COG: SA0578_1 COG1009 # Protein_GI_number: 15926299 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Staphylococcus aureus N315 # 1 630 1 630 630 776 67.0 0 MSLVYLMATNLLVMFIVLFTLSHRQLRKIAGYVALIAPIVTSTYFIMKIPDVIRNKFIAV QLPWMPSIDINLDLRLDGLSLMFGLIISLIGVGVFFYATQYLSHSTDNLPRFFIYLLLFM FSMIGIVIANNTILMYVFWELTSISSFLLISYWYNNGESQLGAIQSFMITVFGGLALLTG FIILYIITGTNTITDILNQRNAISRHPLFIPMILMLLLGAFTKSAQFPFHIWLPKAMAAP TPVSAYLHSATMVKAGIFLLFRFTPLLGLSNVYIYTVTFIGLITMLFGSLTALRQYDLKG ILAYSTISQLGMIMTMVGLGGGYAQHTSDELSKFYILVLFAGLFHLMNHAVFKCALFMGV GIIDHESGTRDIRLLNGMRKVFPKMHIVMLLAALSMAGVPFLNGFLSKEMFLDSLTKANE LDQYGFVLTFVIVSIGVIASILTFTYALYMIKETFWGKYNIEKFKRKQIHEPWLFSLPAV ILMLLIPVIFFVPNVFGNFIILPATRSVSGIGAEVDAFVPHISQWHGVNLPLILSIVVII IGLILALVVNWKEVTHQIIKRASITDGYRKIYREFELYSARGIRALMNNKLNYYIMITLF IFVAIVVYGYLTVGFPHVHQLHVSSFGPLEVILSVVTLIIGISLIFIRQRLTMVVLNGMI GFAVTLYFITMKAPDLALTQLVVETITTILFIVSFSRLPNIPRAKANLKKETFKIIVSLV MALTVVSLIFVAQQADGMPSIAKFYEDAYELTGGKNIVNAILGDFRALDTMFEGLVLIIA GLGIYTLLNYKDRRGQDERE >gi|224999921|gb|ACJC01000079.1| GENE 15 13549 - 13974 444 141 aa, chain + ## HITS:1 COG:SA0579 KEGG:ns NR:ns ## COG: SA0579 COG2111 # Protein_GI_number: 15926300 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhB subunit # Organism: Staphylococcus aureus N315 # 1 141 1 141 141 157 78.0 5e-39 MKENDVVLKSVTKIVVFILLTFGFYVFFAGHNNPGGGFIGGLIFSSAFILMFLAFDVNEV LKSLSIDFKKLMIIGSLISVATASVPMFFGKPFLYQTEANVAFPLLGHVHVTTVTLFELG ILLTVVGVIVTVMLSISGGRS >gi|224999921|gb|ACJC01000079.1| GENE 16 13971 - 14315 391 114 aa, chain + ## HITS:1 COG:SA0580 KEGG:ns NR:ns ## COG: SA0580 COG1006 # Protein_GI_number: 15926301 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhC subunit # Organism: Staphylococcus aureus N315 # 1 112 1 112 114 156 86.0 7e-39 MNLILLLVIGFLVFIGTYMILSINLIRIVIGISIYTHAGNLIIMSMGKYGPHMSEPLIQG HAQNFVDPLLQAIVLTAIVIGFGMTAFLLVLIYRTYRVTKEDEISALKGDEDDE >gi|224999921|gb|ACJC01000079.1| GENE 17 14308 - 15807 1143 499 aa, chain + ## HITS:1 COG:SA0581 KEGG:ns NR:ns ## COG: SA0581 COG0651 # Protein_GI_number: 15926302 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Staphylococcus aureus N315 # 1 494 2 495 498 675 78.0 0 MSNLIILPMLLPFVCALILVFAKNKNQISKILSITTMIVNTIISIALLIYVVNHKPITLD FGGWKAPFGIQFLGDSLSLLMVSVSSFVVTLIMAYGFGRGEKRVNRFHLPTFILLLTVGV IGSFLTSDLFNLYVMFEIMLLASFVLVTLGQSVEQLRAAIVYVVLNILGSWLLLLGIGML YKTVGTLNFSHLAMRLNHMENNQTITIISLVFLVAFSSKAALVIFMWLPKAYAVLNTELA ALFAALMTKVGAYALIRFFTLLFDHHPSVTHTLLVFMACITMIIGAFGVIAYKDIKKIAA YQVILSIGFIILGLGSHTIPGVNGAIFYLANDIIVKTLLFFVIGSLVYMSGYRNYQYLSG LAKREPFFGVAFVVVIFAIGGVPPFSGFPGKVLIFQGAITNGNYIGLALMIVTSLIAMYS LFRVMFIMYFGDADGEQVQFRPLPIYRKGLLSVLVVVILAMGIAAPVVLKVTEDATNLNM KEDVFQKNVNTHLKEVNRK >gi|224999921|gb|ACJC01000079.1| GENE 18 15804 - 16286 134 160 aa, chain + ## HITS:1 COG:SA0582 KEGG:ns NR:ns ## COG: SA0582 COG1863 # Protein_GI_number: 15926303 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhE subunit # Organism: Staphylococcus aureus N315 # 1 160 1 160 160 215 81.0 3e-56 MKQVVLNIVIAFLWVLFQDEDEFKFTTFFAGFLIGLIVIYILHRFFGEEFYLKKIWVAIK FLAVYLYQLITSSISTINYILFKTNEVNPGLLTYETSLKSNWAITFLTILIIITPGSTVI RISKNTNKFFIHSIDVSEKDKEHLLKSIKQYEDLILEVTR >gi|224999921|gb|ACJC01000079.1| GENE 19 16283 - 16585 257 100 aa, chain + ## HITS:1 COG:SA0583 KEGG:ns NR:ns ## COG: SA0583 COG2212 # Protein_GI_number: 15926304 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhF subunit # Organism: Staphylococcus aureus N315 # 1 99 1 99 100 98 75.0 3e-21 MIEMFTQIFIISALVIFGMALLVCLVRLIKGPTTADRVVSFDASSAVVMSIVGVMSVIFN SVSYLDSIMLIAIISFVSSVSISRFIGEGRVFNGNHKRHR >gi|224999921|gb|ACJC01000079.1| GENE 20 16560 - 17024 458 154 aa, chain + ## HITS:1 COG:SA0584 KEGG:ns NR:ns ## COG: SA0584 COG1320 # Protein_GI_number: 15926305 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhG subunit # Organism: Staphylococcus aureus N315 # 1 142 1 142 145 199 77.0 1e-51 MEIIKDIVSLIAAIFIFLGSIIALISAIGIVKFQDVFLRSHASTKSSTLSVLLTVVGVLI YFIVNSGFFSVRLLLSLVFINLTSPVGMHLISRAAYRNGAYMYRKDDAPRQSTILLSQKE FNTPEELKKRAKLREERREKLYYKEKEYINKIDD >gi|224999921|gb|ACJC01000079.1| GENE 21 17575 - 19503 1573 642 aa, chain + ## HITS:1 COG:SA0585 KEGG:ns NR:ns ## COG: SA0585 COG0025 # Protein_GI_number: 15926306 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 1 642 38 680 680 1045 86.0 0 MILYLTPIPVEFNFDSELFMVTLIAPLLFVEGVNVSRVHLRKYIKPVMMMALGLVITTVI GVGLFIHWIWPELPIGAAFAIAAILCPTDAVAVQAITNGKVLPKGSMTILEGESLLNDAA GIISFKIAVGVLITGTFSIFDAIQQFLIASIGGAIVGLLIGMALVRFRLTLMRRGIENIN MFTFIQLLTPFVTYLIAELFHASGIIAAVVAGLVHGFERDRIAQTRTQLQMSYNHTWSIL GYVLNGFVFSILGFLVPEVIVKIIKTEPHNLLFLIVITLLVALAVYLFRFVWVYVLYPYF YLSVSPFQKMISKNDEDKVTESKPKRSLYALIMTLCGVHGTISLAIALTLPYLLANHETF AYRNDLLFIASGMVILSLIIAQVILPLVTPDSPKVKIGNMSFKEARIYILEHVIDYLNQK STFETSYRYGNVIKDYHDKLTFLKTVEKEDENSKELERLQKIAFNVETKTLEKLVDDGEI TESVLENYMRYAERTEVYKQASLLRRIIVGLRGMLLKRRVKTKINSASSLSVTDNLLELG KINKLVHYNVVSRLAKEATTDNKLEVGMICDGYLMRIDNLTPNNFFNSRHEDTLTKIKLN ALREQRRILRELIENDEITEGTALKLRESINYDEMVIVDSMT >gi|224999921|gb|ACJC01000079.1| GENE 22 20238 - 21167 1079 309 aa, chain - ## HITS:1 COG:SA0587 KEGG:ns NR:ns ## COG: SA0587 COG0803 # Protein_GI_number: 15926308 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Staphylococcus aureus N315 # 18 309 18 309 309 426 78.0 1e-119 MKKILALVIAFLIILAACGNQSNHEHHSHEGKLKVVTTNSILYDMVKRVGGNKVDVHSIV PVGQDPHEYEVKPKDIKALTDADVVFYNGLNLETGNGWFEKALDQAGKSTKDKSVIAASN NVKPIYLNGEEGNKNKQDPHAWLSLDNGIKYVKTIQKSLEHHDKKDKSTYEKQGNAYISK LEELNKDSKNKFDDIPQNQRAMMTSEGAFKYFAQQFDVKPGYIWEINTEKQGTPGQMKQA IKFVKDHHLKHLLVETSVDKKAMQSLSEETKKDIYGEVFTDSIGKKGTKGDSYYKMMKSN IDTIHGSMK >gi|224999921|gb|ACJC01000079.1| GENE 23 21164 - 22000 604 278 aa, chain - ## HITS:1 COG:SA0588 KEGG:ns NR:ns ## COG: SA0588 COG1108 # Protein_GI_number: 15926309 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 278 1 278 278 310 82.0 1e-84 MLDFFNHLLSYQFLNRALITSILVGIVCGTMGSIIVLRGLSLMGDAMSHAVLPGVALSFL FNIPMFIGALVTGMLASLFIGFITSNSKTKPDAAIGISFTAFLASGVIIISLINSTTDLY HILFGNLLAITHQSFWTTIVITVLVILLIIIFYRPLMISTFDSTFSRMSGLNTTIIHYFV MLLLALVTVASIQTVGIILVVALLITPASTAFLISKQLYTMMVIASIISVISSIIGLYFS YIYNIPSGATIVICTFMIYIVTLSITRIKNKQKRSALT >gi|224999921|gb|ACJC01000079.1| GENE 24 22001 - 22747 169 248 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 207 1 212 245 69 27 2e-11 MLEVNHLNLFLGKKHILKDITFSLPINGEIIGIVGPNGAGKSSLLKAFIGEFKATGKHTL YDHPIHTQLRYITYIPQKAHIDLDFPIKVDQVILSGCYEDIGWFKKASVVEKTKLNQLLN DLELDHIRHRQIAELSGGQLQRVLVARALMSNSDIYCLDEPFVGIDIYSEQLIMKKIKHL RHMGKLILIVHHDLSKADQYFDRILLLNQSLQFLGPTKEALSSKRLNATFINYKDDSLLT LSSQGSTN >gi|224999921|gb|ACJC01000079.1| GENE 25 22867 - 23511 653 214 aa, chain + ## HITS:1 COG:SA0590 KEGG:ns NR:ns ## COG: SA0590 COG1321 # Protein_GI_number: 15926311 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 214 1 214 214 315 81.0 4e-86 MLTEEKEDYLKAILTNDGDVSFVSNKKLSQFLNIKPPSVSEMVGRLEKEGYVETKHYKGA RLTEEGLKQTLDIIKRHRLLELFLIEILQYNWEEVHQEAEILEHRISDLFVERLDKILNF PKTCPHGGVIPRGDQYKEIFTTSILNFEPGECVTVRRVRDKTELLVYLSSKDIYIGNTVE VVSKDDTNKVIILKRNDIVTILSYENAMNIFAEK >gi|224999921|gb|ACJC01000079.1| GENE 26 23675 - 24421 433 248 aa, chain - ## HITS:1 COG:no KEGG:SERP0294 NR:ns ## KEGG: SERP0294 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 248 1 248 248 370 95.0 1e-101 MIHIQNFITTTIQLNIYLILVIGLLYLIIHYYRYKGFNAFLDIYLNYIPVLTHEFGHVLF NKLVGGKAKDLVIVTSPRERNVTSQQGYAITQSKGYLGQFITTIGGYLMPPLMFLTGLVS IHYQYPSIFITIYLLIFIYYFFITSRKLSPLIVIILISSLLYLVFRQDHQWFIYDIVTLS YHFILGVLLGEILQSSWTIFRLTFQRPKPSWDGSALTEITRVPTFIFSLVWILFNFYTVY LLIKYTIL >gi|224999921|gb|ACJC01000079.1| GENE 27 24559 - 25353 765 264 aa, chain + ## HITS:1 COG:SA0592 KEGG:ns NR:ns ## COG: SA0592 COG1922 # Protein_GI_number: 15926313 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Staphylococcus aureus N315 # 22 251 11 240 254 358 71.0 8e-99 MHFKRVVKWGLDMYQNQRIKNKINILGVNFDNTTMLEMVENIKQFISSNTDDNLFIVTAN PEIVDYATEHEQYRNLINQADYVVPDGTGIVKASKRLKQPLKRRVPGIELLEECLKIAHV SHQRVYLLGSKNEIIETAEKKFQSQYPNIHFAHHHGYIHLEDETVIKRITSFNPDYIFVG MGFPKQEQWIQKHKDKFKHTVMMGVGGSFEVFSGSKKRAPQIFRKLNIEWVYRVLIDWKR IGRMISIPKFMLKVAIQKYKMKSK >gi|224999921|gb|ACJC01000079.1| GENE 28 25431 - 26225 754 264 aa, chain - ## HITS:1 COG:SA0593 KEGG:ns NR:ns ## COG: SA0593 COG1134 # Protein_GI_number: 15926314 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 264 1 264 264 434 83.0 1e-122 MSVSVNIENLTKEYRIYRNNKDRIKDALIPKNKNKTFYALDNVSLTAHEGDVIGLVGING SGKSTLSNMIGGSISPSSGEITRHGDVSVIAINAGLNGQLTGVENIEFKMLCMGFKRKEI KKLMPEIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFTQ KCLDKIYEFKAAKKTIFFVSHNIRQVREFCTKIAWIEGGKLKEFGELEEVLPDYEAFLKT FKKKSKAEQKEFRNKLDESRFVVK >gi|224999921|gb|ACJC01000079.1| GENE 29 26556 - 27368 471 270 aa, chain + ## HITS:1 COG:SA0594 KEGG:ns NR:ns ## COG: SA0594 COG1682 # Protein_GI_number: 15926315 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Staphylococcus aureus N315 # 1 270 8 277 277 401 78.0 1e-112 MFAVGTVLKEHIKNFYLIQRLAQFQIKITNHNNYLGIAWEVLNPALQIMVYWLVFGLGIR SNAPIHGIPFVFWLLVGISMWFFINQGVLEGTKSISQKFNQVAKMNFPLSIIPTYIVTSR FYGHLGLLAIIIIACMCNGIIPSIHIVQLLIYVPFAYLLTSSVALLTSTLGILIRDTQMI MQALMRILFYMSPILWVPKNHGVSGLIHQIMLFNPVYFIAESYRAAILFHQWYFIDHWKL MLYNVIIILLFFIVGSILHRRYRDHFADFL >gi|224999921|gb|ACJC01000079.1| GENE 30 27788 - 28783 741 331 aa, chain + ## HITS:1 COG:SA0595 KEGG:ns NR:ns ## COG: SA0595 COG1887 # Protein_GI_number: 15926316 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Staphylococcus aureus N315 # 179 330 1 154 156 162 53.0 9e-40 MMTFKQDVLPIIEALCSEGYHVTVIGKKIYQKDINNINHAYFIPAGNKYIMKHMKVLSKA KVIILDTYYLMMGGYQKKKGQTVIQTWHAAGALKNFGLTDHQVDLKNKAMVRQYKKVYDA TDYYLIGGEKMAQCFIQSFDASPSQMLKFGLPRLTQYFRSNLKLEQQRLKKKYHITNKLA VYVPTYREGQVAQRTIDKENFERHLPNYTLLSHLHPSTVDCQTAHSIDVTSLLIMADIII SDYSSLPIEASALNKPTLIYNYDEQQYEKVRGLNEFYYAIPERYKMSNEESIIQAIHDND EQFQSLFNDWHQYNSKDSLNQLVHFINKLVK >gi|224999921|gb|ACJC01000079.1| GENE 31 28783 - 29847 948 354 aa, chain + ## HITS:1 COG:SA0596 KEGG:ns NR:ns ## COG: SA0596 COG0463 # Protein_GI_number: 15926317 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 20 350 2 335 335 202 33.0 1e-51 MKLAIIIPVYNAEETIKRAILSVDTSVPYEIICINDGSTDQTQHVLTELQQKHPHIKVTH QSNQGAARSRNVGLEAMSEDVDAFLFLDADDEFLPSRIDLMVDAFKKNKETDIVIGQMAR EVNGEWQVISTHQSMVKDAIVTLDRKPDILQSIGPGAKLFSTKYAGLRFDEDVVFCEEHT FIVKAFSKARDIQLIPNIVYGYNEREGSVTAQRADTFLPYMSDALKVRQRVMELLLLLDE KIYYSYRMDNLIVSYLIQAHLKKNNKMTQSLLESVIAYMKAMQHTHYSGEAMFRIVRAVE QSATHWTKPLYLQWKKALSEVGIGRPGLIRFKLQVIPKKISFSGKESLKRIFKK >gi|224999921|gb|ACJC01000079.1| GENE 32 29982 - 30380 458 132 aa, chain + ## HITS:1 COG:SA0597 KEGG:ns NR:ns ## COG: SA0597 COG0615 # Protein_GI_number: 15926318 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Staphylococcus aureus N315 # 1 132 1 132 132 229 94.0 8e-61 MKRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKNKKSYYDYEQRKMMLE SIRYVDLVIPEEGWGQKEKDVDRFDVDVFVMGHDWEGEFDFLKDKCEVIYLNRTEGISTT KIKQELYGKDTK >gi|224999921|gb|ACJC01000079.1| GENE 33 31022 - 31198 87 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYVTMFFVVDIITFFIRTHAKDYLIVQKIARHLIFIFCHRSVLKSTNEIFTMVQYFYE >gi|224999921|gb|ACJC01000079.1| GENE 34 31367 - 33094 173 575 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 351 548 21 214 311 71 26 8e-12 MKEQNPLFFLFKKLSWPYGLIIAAVIITSLGSLSGLLVPLFTGRLVDKFSVSSINWGMIA IFGSIFLVNALLSGIGLYLLSKIGEKIIYAIRSLLWEHIIQLKMPFFDKNESGQLMSRLT DDTKVINEFISQKLPNLLPSVLTLIGSLVMLFIMDWKLTLLTFITIPVFILIIVPLGRVM QKISTNTQSEIANFSGLLGRVLTEMRLVKVSNTERLELDNAHTNLKKIYRLGLKQAKISA VVQPISGVVMLLTIAIILGFGALEIGTGAITPGTLIAMIFYVIQLSMPLINLSTLVTDYK KAVGASSRIYEIMQEPIEPTEALSESKDVTIIDGELVFEHVDFKYDVKKILEDVSFSIPQ GEVSAFVGPSGSGKSTIFNLIERMYDIERGDIKYGNQSIFDIPLSKWRTKIGYVMQSNSM MSGTIRDNILYGINRKVDDEELIEYAKLANCHDFIMQFDEGYDTMVGERGLKLSGGQRQR IDIARSFVKNPDILLLDEATANLDSESELKIQEALETLMEGRTTVVIAHRLSTIKKAGQI VFIDKGEVTGKGTHHELMASHDKYRHFVTSQKLSD >gi|224999921|gb|ACJC01000079.1| GENE 35 33097 - 33285 102 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNDEQQKNENVCFTYYISVQTPKVLLILQKLLYHVKNRVKMTFLQNLHKKTRPSTHLLG RD >gi|224999921|gb|ACJC01000079.1| GENE 36 33341 - 34609 1365 422 aa, chain + ## HITS:1 COG:SA0600 KEGG:ns NR:ns ## COG: SA0600 COG1972 # Protein_GI_number: 15926322 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 14 422 1 409 409 634 85.0 0 MHESVKIHIGRCQMFLLVNIIGLFIFLGIGVIFSRNRKNIQWKSIFILVILNLFLAWFFI YFPWGRTGVKGAANGIAWVIESAHEGTGFAFKSFTSNKMMDMAVSALFPILLVVPLFDIL MYFNILPKIIGGIGWVLAKVTRQPKFESFFGVEMMFLGNTEALAVSSEQLKRMNEMRVLT IAMMSMSSVSGAIVGAYVQMIPGELVLTAIPLNIINAIIVSCILNPVSVEEQEDVVYSIR DHQTERQPFFSFLGDSVLAAGKLVLIIIAFVISFVALADLIDRLIHLITHLIANSIGVKG SFGLDQILGAFMYPFALLLGLPLNEAWEVAQQMAKKIVTNEFVVMGEISNQVNAMTPHHR AVISTFLVSFANFSTIGMIIGTLKGIVDKKTSDFVSKYVPMMLLAGILVSLLTAAFVGIF AW >gi|224999921|gb|ACJC01000079.1| GENE 37 35147 - 35980 787 277 aa, chain + ## HITS:1 COG:SA0601 KEGG:ns NR:ns ## COG: SA0601 COG1284 # Protein_GI_number: 15926323 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 76 277 2 203 203 293 81.0 2e-79 MNKTIRDIILVIIGSFIFSAGINAFVISGNLGEGGVTGIAIVLYYAFHISPAITNFVLNA ILIIVGYKYLSKRSTYLTIFATVLISIFLGLTETWHVETGNVVINAVFGGTCVGLGIGII VLAGGTTAGTVILARIVNKYLDISTPYALLFFDLIVVLISLTEIPLAKCLVTVMSLYIGT KVMEFVIEGLNTKKAMTIISSRPNEVAKAIDQQVGRGLTILNGHGYYTREEKDVLYVVIS KTQVSRAKRIIKNIDENAFLVIHDVRDVYGNGFLLDE >gi|224999921|gb|ACJC01000079.1| GENE 38 36339 - 37136 273 265 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 14 227 33 249 329 109 30 2e-23 MSRLSGEQVKIGYGDSTIINNLDVAIPDGKVTSIIGPNGCGKSTLLKALSRLLSIKEGRI NLDGKSIHATSTKEIAKKIAILPQSPEVPDGLTVGELVSYGRFPHQKGFGRLTAEDKKEI DWALSVTGTSEFRHRTINDLSGGQRQRVWIAMALAQRTDIIFLDEPTTYLDICHQLEILN LVKKLNEEEGCTIVMVLHDINQAIRFSDHLITMKAGDIVATGQTEEVLTKDILEKVFNID GVLDIDPRTGKPILVTYDLFCQTYS Prediction of potential genes in microbial genomes Time: Sun May 29 07:33:20 2011 Seq name: gi|224999920|gb|ACJC01000080.1| Staphylococcus epidermidis W23144 contig00120, whole genome shotgun sequence Length of sequence - 18710 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 10, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 11 - 70 10.0 1 1 Tu 1 . + CDS 307 - 807 707 ## SERP0307 hypothetical protein + Term 819 - 864 3.1 + Prom 944 - 1003 9.2 2 2 Tu 1 . + CDS 1032 - 2099 1357 ## COG3949 Uncharacterized membrane protein + Prom 2278 - 2337 7.9 3 3 Tu 1 . + CDS 2378 - 3427 851 ## COG0657 Esterase/lipase - Term 3881 - 3915 -0.4 4 4 Tu 1 . - CDS 3972 - 4478 195 ## PROTEIN SUPPORTED gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase - Prom 4510 - 4569 7.3 + Prom 4337 - 4396 5.7 5 5 Op 1 2/0.250 + CDS 4587 - 5510 836 ## COG0451 Nucleoside-diphosphate-sugar epimerases 6 5 Op 2 40/0.000 + CDS 5529 - 6203 658 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 7 5 Op 3 4/0.000 + CDS 6196 - 7236 844 ## COG0642 Signal transduction histidine kinase + Prom 7238 - 7297 8.3 8 5 Op 4 36/0.000 + CDS 7405 - 8142 178 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 9 5 Op 5 1/0.750 + CDS 8132 - 10021 1498 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 10098 - 10155 14.1 + Prom 10401 - 10460 10.6 10 6 Op 1 21/0.000 + CDS 10513 - 11160 541 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) 11 6 Op 2 . + CDS 11175 - 12185 1066 ## COG0306 Phosphate/sulphate permeases - Term 12288 - 12327 4.5 12 7 Tu 1 . - CDS 12350 - 13150 708 ## COG3942 Surface antigen - Prom 13187 - 13246 6.0 + Prom 13465 - 13524 8.7 13 8 Tu 1 . + CDS 13560 - 14219 599 ## COG0670 Integral membrane protein, interacts with FtsH + Prom 14350 - 14409 11.7 14 9 Op 1 3/0.000 + CDS 14642 - 16657 1236 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 16727 - 16760 -0.7 + Prom 16677 - 16736 5.5 15 9 Op 2 . + CDS 16771 - 17130 205 ## COG1846 Transcriptional regulators + Term 17201 - 17244 7.0 + Prom 17231 - 17290 7.8 16 10 Op 1 . + CDS 17382 - 18098 998 ## COG0217 Uncharacterized conserved protein 17 10 Op 2 . + CDS 18101 - 18574 340 ## COG3542 Uncharacterized conserved protein + Term 18591 - 18644 6.1 Predicted protein(s) >gi|224999920|gb|ACJC01000080.1| GENE 1 307 - 807 707 166 aa, chain + ## HITS:1 COG:no KEGG:SERP0307 NR:ns ## KEGG: SERP0307 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 166 1 166 166 295 100.0 3e-79 MQHLIKKHVLNGEFELVRQLMSETDFMEFEEAYISSAHEVESMMFYTCILDMIKVEESSE LHDLAFLLLVYPLSEYEGALDSAYYHADSSIKLTDGNEVKSLLQMLLLHAIPEPVISDKK AFDVAKRILKLDPSNNVARNVLKDTAKRMDNVVVDINELNNQRDAR >gi|224999920|gb|ACJC01000080.1| GENE 2 1032 - 2099 1357 355 aa, chain + ## HITS:1 COG:SA0609 KEGG:ns NR:ns ## COG: SA0609 COG3949 # Protein_GI_number: 15926331 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Staphylococcus aureus N315 # 30 355 1 326 326 431 76.0 1e-121 MGLNKEAIKIGFAYVGIVVGAGFSTGQEVMQFFTPFGLWSYIGVIISGFILGFIGRQVAK IGTAFEAKNHESTLQYVFGKKFSKVFDYILVFFLFGIAVTMIAGSGSTFEQSFGIPTWLG ALIMTVLIYLTLLLDFNKIVRALGIVTPFLIIMVILIAVFYLFTGSISLGEVNSAMPETS AWKGIFWGLVYGGLAFAVGFSTIVAIGGDASKRRVSGAGAMFGGVLYAILLALINFSLQT EYSKIKDVAIPTLNLAKGIHPWLGLILTVIMLAVMYNTILGLCYSFAARFTEPYSKKYHI FIVIMMVMAFILSFVGFADLINVLYKFMGIVGLFIVVAVLIKYYKRKKDDEEHIA >gi|224999920|gb|ACJC01000080.1| GENE 3 2378 - 3427 851 349 aa, chain + ## HITS:1 COG:SA0610 KEGG:ns NR:ns ## COG: SA0610 COG0657 # Protein_GI_number: 15926332 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 348 1 347 347 466 66.0 1e-131 MKKKLKWIWITTLIILVVALILAFNLKSHYNHVHDKQKSKTNVQINNKNVKLYRDISYGK GMPNSKLDIITPADMSNDTKLPVIFWMHGGGFIAGDKQYKNQLLSRIAEQGYIIVNVNYA LAPQYKYPTPLVQLNQAVKFVKENKHELPIDFDQVVIGGDSAGAQLTSQYVAMQTNEDLR DEMHFEQQFKPSQIKAAVFFGGFYNMKTVRATEFPRIQLFMKSYTGTSHWETDFKNLSQM STLNQVTHEYPPTFLSVGDADPFYSQNKEFAQGLKAENIPVDTLFYDGSHHLHHQYQFHL DKPESKENIKKVLLFLSRNTSSSGVESNESSQNQPTQNTNEVSLYPFDS >gi|224999920|gb|ACJC01000080.1| GENE 4 3972 - 4478 195 168 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase [Brachyspira murdochii DSM 12563] # 5 163 4 162 166 79 29 1e-14 MAHLIREISIKDVENFISLLSQIYDESEFTFYNPGEYSPTISSASQHLEKYITSPTKAIY VAESDEQLVGYVFVNTETYERTQHEAVVYLGVREYYQHQGIGQALINRIEAWALNHHIRR IEATVVTENINAIELFKGMDFQIEGELKDKLFINQKYYNEYVMAKILN >gi|224999920|gb|ACJC01000080.1| GENE 5 4587 - 5510 836 307 aa, chain + ## HITS:1 COG:SA0613 KEGG:ns NR:ns ## COG: SA0613 COG0451 # Protein_GI_number: 15926335 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 307 1 307 307 392 59.0 1e-109 MKPKVLLAGGTGYIGRYLSRVIEHDAQLYALSKYPKPDKGSTNKITWLKRDIYNYKDVVE AMEGIDIAVYYLDPTKHSAKLTHATARDLNFIAADNFGRAASINKLKKIVYIPGSRHDNE AIERLGAYGVPVDCTDVEVKRPHINVELQTAKYDDVRTAMKMILPKKWTLNQLVDYFSRW LDETKGTFVHTQKQGHHYIIYNKNIKSPLAIFKMINTTEDIITLHLIGGKLMKPKLKKQA KLEFRLLKGTRLIMVHLYDYIPRLFWPIYYFVQAPIQGLLMRGFEIDCRIKHYQGRIQSG EKIKYTK >gi|224999920|gb|ACJC01000080.1| GENE 6 5529 - 6203 658 224 aa, chain + ## HITS:1 COG:SA0614 KEGG:ns NR:ns ## COG: SA0614 COG0745 # Protein_GI_number: 15926336 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 385 91.0 1e-107 MQILLVEDDNTLFQELKKELEQWDFNVAGVEDFSHVMETFETFNPEIVILDVQLPKYDGF YWCRKMRQQSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYE FGVEEKRTLSWQDATVDLSKDSIQKDDKTIFLSKTEMIILEMLINKRNQIVTRDTLITAL WDDEAFVSDNTLTVNVNRLRKKLSEIDMDSAIETKVGKGYLAHE >gi|224999920|gb|ACJC01000080.1| GENE 7 6196 - 7236 844 346 aa, chain + ## HITS:1 COG:SA0615 KEGG:ns NR:ns ## COG: SA0615 COG0642 # Protein_GI_number: 15926337 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 346 1 346 346 476 69.0 1e-134 MNNFRWFWFFIKSRSNWILWILFLNIILLGVAYIDYEISVESVFYIVILNIGSSILFLLF TFVKEVRLSKHFYEDKEIEEIKHKDLAETPFQQQVIDYLYRHITAQKEKVVEQQLQIKNH EQTITEFVHDIKTPVTAMKLLIDQESDDQRKRALLFEWSRINEMLDKQLYLTRLESQHRD MYFDYISLKRMVIDEIQVTRHISQAKGIGFELDFKDEQKVYTDVKWCRMMIRQVLSNSLK YSDNSTINLSGYTIEGHVVLKIKDYGRGISQRDLPRIFDRGFTSTTDRNDTASSGMGLYL VQSVKEQLGIEVKVDSIVGKGTTFYFIFPQQNEIIERMSKVTRLSF >gi|224999920|gb|ACJC01000080.1| GENE 8 7405 - 8142 178 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 15 220 147 346 398 73 27 1e-12 MSKVYGDKQAFQEVLKEINLDVDEGEFISIMGPSGSGKTTLLNVLSSIDYMTKGSITING KQLEKLSNKQLSDIRKKDIGFIFQDYNILNTLTVKENIMLPLSVQKLDKQIMHERYQRIV EALNISDISDKYPSELSGGQRQRTSAARAFINLPSIIFADEPTGALDSKSTLDLLKRLKY MNEEFNTTILMVTHDPVAASFSNRVVMLKDGQIFTELYQGDDDKQTFYKEIIRTQSVLGG INYEL >gi|224999920|gb|ACJC01000080.1| GENE 9 8132 - 10021 1498 629 aa, chain + ## HITS:1 COG:SA0617 KEGG:ns NR:ns ## COG: SA0617 COG0577 # Protein_GI_number: 15926339 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 629 5 633 633 697 61.0 0 MNFNEIIFKNFKQNVTHYAIYLLSLVISVVLYFSFVTLKYAHHLHGNQSFPVIKEGSQVG SYFLFIIIVVFLLYANFLFLKRRGRELSLLQIIGLTKKDIMKMVMLEQLMTFMMTTIIGI ILGIFGSKILLMIVLRLLGINVSVSIIFNYHAILETLLLIAVSYVLIVFQSYVYLLKRSI KELASDVNKKEFSHTRTTLGEVVLGVLGIIMIVSGYIMSTKLVDNVETIIQPFAILFLTV IGSYFFFRSTVSLIFKAIQRLRNGTVSVTDVMFTSPIIYRVKKNAFSLTIMTVVSAITVS VLCFAALSRSTLTNEVLLSSPHDVTLKNQRQANELAFKLNNRNIEHYYNYKEVVYAKVYK DHLFSEGVYRPKEITVTSDKYIPNVSTKKGQTDIIIPRGSLKDVVKTDKKGTAYVGSKKF RLKVSLRKGINKVYFMSDVDRGRPTLILNDEDYQKIREHIKEKNIVSQYGFDLKNKNDLP ELEKLVSSINEDIETRSEAASEISSLTGILLFVTSFLGITFLIAAGCIIYIKQIDETEDE LENYTILRKLGFTHQDMSKGLKLKVIFNFGLPLIIALLHAYFASLAYMHLMNVTNQIPIF IVMAVYTATYAVFAIIAYNHSKRTIKHSI >gi|224999920|gb|ACJC01000080.1| GENE 10 10513 - 11160 541 215 aa, chain + ## HITS:1 COG:SA0618 KEGG:ns NR:ns ## COG: SA0618 COG1392 # Protein_GI_number: 15926340 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Staphylococcus aureus N315 # 11 215 1 205 205 348 95.0 5e-96 MTIAQNGGFLMFSKKKDKFMVQLEEMVFNLDRAAIEFGKMDFNTHLDLKAYSDNIKTYES HGDELMHQVISDLNQTFITPIEREDILSLCNAIDDVLDAMEETSAMFEMYSIEYTDEYMA EFVENIQKAVAEMKLAVGLLVDKKLSHMRIHSINIKEFETNCDGILRQSMKHIFNSETDP ITLIKIKDIYQSMEEIADKCQAVANNFETIIMKNS >gi|224999920|gb|ACJC01000080.1| GENE 11 11175 - 12185 1066 336 aa, chain + ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 1 335 1 335 335 495 86.0 1e-140 MSYILIVTIAIVIFSLIFDFINGFHDTANAVATAVSTRALTPRRAILLAAVMNFIGALTF TGVAGTITKDIVDPFKLQHGLVVVLAAIIAAIIWNLITWLYGIPSSSSHALIGSIAGAAI ASQGSFAVLHYQGFTKIIIVLIISPIIAFCVGYMMYTIVKIVFKNSNLTRTNRNFRFFQI FTAALQSFSHGTNDAQKSMGIITLALIVGNLQDGSNVEPQVWVKVACATAMGLGTAVGGW KIIKTVGGNIMKIRPANGASADISSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKG VKWSTAQRMVVTWVITLPISAILAAIIYFVIHLFLK >gi|224999920|gb|ACJC01000080.1| GENE 12 12350 - 13150 708 266 aa, chain - ## HITS:1 COG:SA0620_2 KEGG:ns NR:ns ## COG: SA0620_2 COG3942 # Protein_GI_number: 15926342 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 155 266 2 113 113 191 91.0 2e-48 MKKLAFAITAASGAAAVLSHHDAEASTQHKVQSGESLWTIAQQYNTSVESIKQNNNLSNN MVFPGQVINVGGSASQSTSSNTSSSSASSHTVVAGESLNIIANKYGVSVDALMQANHLNG YLIMPNQTLTIPNGGSGSGSGGTATQTSGNYTSPSFNHQNLYTEGQCTWYVFDKRSQAGK PISTYWSDAKYWASNAANDGYQVDNTPSVGAIMQSTPGPYGHVAYVERINGDGSILISEM NYANGPYNMNYRTIPASEVSSYAFIH >gi|224999920|gb|ACJC01000080.1| GENE 13 13560 - 14219 599 219 aa, chain + ## HITS:1 COG:SA0621 KEGG:ns NR:ns ## COG: SA0621 COG0670 # Protein_GI_number: 15926343 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Staphylococcus aureus N315 # 1 218 1 213 214 263 72.0 1e-70 MSQSTHQSTDHKRQSQDKNQTHAYAKVWLYFMYYWMIFGIGCYFGQYLPMSWRKPLSLGL LILILATLFIKRARKYGLVISHIYAIIVGLLSYALFTTYLQNLGAEVFYKNIILAIGAFI AFGIVGYFLIKDASSMGKYLFVTLIALIIAGIIGIFINNPIFHTVITIVSLLLFLLYTLY DFNRMKRGQFSPREMGFNLFINLLNIIEDILSLANRFKN >gi|224999920|gb|ACJC01000080.1| GENE 14 14642 - 16657 1236 671 aa, chain + ## HITS:1 COG:SA0622 KEGG:ns NR:ns ## COG: SA0622 COG2207 # Protein_GI_number: 15926344 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 658 54 713 716 550 47.0 1e-156 MDVFSISDNGITLEVYISSDWFTELGYSFFNYHYTSDLIQSKNEIKELVAQLTLNFLDGD VDKEQDIINKIVHILANEAIIDKKIAEDQYMYDYYGELKDELNYIYNHIEERLTLKDISN KLYVSKSNLSTQFHLLLGMGFKKYIDTLKISKSIEMLLTTTKTISQISETLGFSNASTYS RQFKNYLSVTPNAYRAMKKYDKYNGCSDDDVSEHLKSRVQSLICSKMPTNELDNYDEIVI DQYPTSNVSTFYSVVQINSIDEIKMLFLQGIHKKIGYEGSKIIFCIMPNLCQYKNTFSQE EMNDIIKIIIEYHLHVAFSIDKIEQIYELNQLFTYQYDNLKNMNKRFVSDYNVQFIFNLD EKSIREIYRNILKIQNIKLEYKIGLDISCMFNDTAQFKSLASQIKRLKFDYLYIDNARLK SPYLLDNEEGLLLKNILQLKRLIDDLKQFDFSSENLIFLNLYNHQLLNNNEIDLSNSAPL LFQAISKLKKHFKGYGLNVFSNPKVFNAVHLFDENGFKTTFGLIFNHLSWMINQNQIQQR FYNIIENTDQYYLYLYDWRVIESESNESDFKDVDIWINFEDEALIDEYICVIAKVDDEGG NINHMISQNLRHKYVWSTPFLMRVEENFRPYMNIMEHDFKKGPLKIRMKYNAVYLVEIYI KGKINKRRSTT >gi|224999920|gb|ACJC01000080.1| GENE 15 16771 - 17130 205 119 aa, chain + ## HITS:1 COG:SA0623 KEGG:ns NR:ns ## COG: SA0623 COG1846 # Protein_GI_number: 15926345 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 118 23 140 141 132 66.0 2e-31 MNEQKLIKLLEFYKQYKALSGYIDKKYKLTLNDLAVLYLAKKYCLDERILMQTFLKLATG ELDISRTKILMSIRRLIDKEKLNKVRSNRDERKIFLYMDENNMSEFDALFEDVEKFLSC >gi|224999920|gb|ACJC01000080.1| GENE 16 17382 - 18098 998 238 aa, chain + ## HITS:1 COG:lin0388 KEGG:ns NR:ns ## COG: lin0388 COG0217 # Protein_GI_number: 16799465 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Listeria innocua # 1 238 1 238 239 345 76.0 5e-95 MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQTLRLVLERAKTYSVP NHIIDRAIDKAKGAGDENYDHLRYEGFGPNGSMLIVDALTNNVNRTASDVRAAFGKNGGN MGVSGSVAYMFDHTATFGVEGKSVDEVLETLMEQDIDVRDVIDDNGLTIVYAEPDQFAQV QDALREAGVEEFKVAEFEMLPQTDIELSEEDQATFEKLIDALEDLEDVQNVFHNVDLK >gi|224999920|gb|ACJC01000080.1| GENE 17 18101 - 18574 340 157 aa, chain + ## HITS:1 COG:sll1188 KEGG:ns NR:ns ## COG: sll1188 COG3542 # Protein_GI_number: 16329452 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Synechocystis # 4 151 6 161 164 138 41.0 4e-33 MTANDWINRLGLISHPEGGYFKETMRGDSNGRASFSSIYFLLTQHDISHFHRIDADEVWY YHAGQTLKIHMITPKGEYQTVKLGRDIDCGECLQYCVPKGTIFASTLDNAEGYSLVGCMC QPGFEYEHFELLTQESLIPQYPQYENIIKRLAISQDD Prediction of potential genes in microbial genomes Time: Sun May 29 07:33:29 2011 Seq name: gi|224999919|gb|ACJC01000081.1| Staphylococcus epidermidis W23144 contig00121, whole genome shotgun sequence Length of sequence - 15989 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 11, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 83 - 757 612 ## COG2846 Regulator of cell morphogenesis and NO signaling - Prom 845 - 904 7.9 + Prom 841 - 900 8.9 2 2 Op 1 . + CDS 929 - 2074 1464 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 3 2 Op 2 . + CDS 2100 - 2279 219 ## SERP0326 hypothetical protein + Term 2326 - 2376 8.4 + Prom 2365 - 2424 6.6 4 3 Op 1 1/0.500 + CDS 2573 - 3166 394 ## COG2306 Uncharacterized conserved protein + Term 3175 - 3216 1.1 5 3 Op 2 9/0.000 + CDS 3247 - 4101 629 ## COG0583 Transcriptional regulator 6 3 Op 3 1/0.500 + CDS 4159 - 5367 1127 ## COG0477 Permeases of the major facilitator superfamily 7 3 Op 4 . + CDS 5374 - 5862 379 ## COG2839 Uncharacterized protein conserved in bacteria + Term 5879 - 5926 14.5 - Term 5867 - 5914 14.5 8 4 Tu 1 . - CDS 5918 - 6607 355 ## SERP0331 hypothetical protein - Prom 6846 - 6905 8.3 + Prom 6960 - 7019 5.9 9 5 Tu 1 . + CDS 7049 - 7468 396 ## SERP0332 putative lipoprotein 10 6 Tu 1 . + CDS 7602 - 7898 412 ## SERP0333 hypothetical protein + Prom 7930 - 7989 6.5 11 7 Tu 1 . + CDS 8024 - 8572 190 ## PROTEIN SUPPORTED gi|227379366|ref|ZP_03862824.1| acetyltransferase, ribosomal protein N-acetylase - Term 8824 - 8871 8.5 12 8 Op 1 1/0.500 - CDS 8891 - 9457 757 ## COG1611 Predicted Rossmann fold nucleotide-binding protein 13 8 Op 2 . - CDS 9468 - 9917 347 ## COG1671 Uncharacterized protein conserved in bacteria 14 8 Op 3 . - CDS 9920 - 10600 906 ## SERP0337 hypothetical protein - Prom 10700 - 10759 7.4 + Prom 10678 - 10737 7.5 15 9 Tu 1 . + CDS 10796 - 11260 452 ## COG3449 DNA gyrase inhibitor - Term 11425 - 11471 -0.3 16 10 Tu 1 . - CDS 11553 - 12425 972 ## COG1968 Uncharacterized bacitracin resistance protein - Prom 12581 - 12640 8.4 + Prom 12564 - 12623 9.0 17 11 Op 1 14/0.000 + CDS 12843 - 14270 173 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 18 11 Op 2 . + CDS 14267 - 15961 1365 ## COG4987 ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components Predicted protein(s) >gi|224999919|gb|ACJC01000081.1| GENE 1 83 - 757 612 224 aa, chain - ## HITS:1 COG:SA0249 KEGG:ns NR:ns ## COG: SA0249 COG2846 # Protein_GI_number: 15925962 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Regulator of cell morphogenesis and NO signaling # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 293 63.0 2e-79 MIKKEDIVADVVTDFPKSADIFRNAGIDFCCGGQESIASAVNHKPNIDLNSLLNKLNHID NTEGNSTINPKFLNVESLIQYIQSAYHETLKEEFKNLTPYVTKLAKVHSPSHPYLLKLQD LYREFRDSMLDHIRKEDEKDFPKLIQYSQGQDVQNIKIILEDLINDHEDTGQLLKVMNQL TSDYQAPEEACGTWKLVYQRLQNIEHQTHQHVHLENHVLFKKVS >gi|224999919|gb|ACJC01000081.1| GENE 2 929 - 2074 1464 381 aa, chain + ## HITS:1 COG:SA0231_2 KEGG:ns NR:ns ## COG: SA0231_2 COG1018 # Protein_GI_number: 15925943 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Staphylococcus aureus N315 # 151 381 1 231 231 329 67.0 5e-90 MLTEKEQDIIKQTVPLLQDKGTEITSIFYPKMFEANPELLNMFNQTNQKKGMQSAALAQA VLAAAMNINNLGAIKPAIMPVAHKHCALQVYPEHYPIVGENLLAAIQDVTGLESDDPVIQ TWAKAYGEIADVFIKLEQEIYNHMLWKGFKPFKITNITQETSDIKSFTVESEEYDLSQFE PGQYITVDVSSEKLPYRAKRHYSIIDGDENHLVFGVKRDVTTEHEGEVSTILHDEISEGD MINLSAPVGGFSIENTERPQLFIGSGVGMTPLVSMFKKAASLNVPTQMIQAVVTEDERPF AQKLDSITDNYEQAQLHLHVKDKEGYLEAKELEQYLREQPEIYICGGTKFLHSIINSLKE LNYDMNHVHFETFIPRLSVQV >gi|224999919|gb|ACJC01000081.1| GENE 3 2100 - 2279 219 59 aa, chain + ## HITS:1 COG:no KEGG:SERP0326 NR:ns ## KEGG: SERP0326 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 59 14 72 72 98 100.0 6e-20 MNPRYVKVFFLYLVSTFISNRLTTNKSLCKTLMQGILGYGLFALGLKYLTIKKKQHQAQ >gi|224999919|gb|ACJC01000081.1| GENE 4 2573 - 3166 394 197 aa, chain + ## HITS:1 COG:SA0626 KEGG:ns NR:ns ## COG: SA0626 COG2306 # Protein_GI_number: 15926348 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 186 1 185 214 286 82.0 2e-77 MKVKYIDKRHWRRLVEREYTEVKVNNNRFKGIIGLVTMKKVREPLEVTVVGQNIIVADDN YKWLQILPDKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTIDLCLDVLVLPNGEY ELVDEDDLMYALQNKQISKKQYHEAYIIAHQLMIEIEDNFSEIQDKVMRCYHKINHKAQK MKHKRPYKAKKKSHRRH >gi|224999919|gb|ACJC01000081.1| GENE 5 3247 - 4101 629 284 aa, chain + ## HITS:1 COG:SA0627 KEGG:ns NR:ns ## COG: SA0627 COG0583 # Protein_GI_number: 15926349 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 63 283 1 221 226 395 87.0 1e-110 MKIDDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIEAAFGVEIFIRTKKQLITTTE GSMIIEHARDMLKRERLFFDKIQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNSQFPNV EIQVQVGSTEQIKAHHRDYHVMITRGNKVMNLSNTHLFNDEHYFIYPKDRKEDVTKLPFI EFQADPIYINQIKQWYNNHLGHDYHATITVDQVATCKEMLLSGVGVTILPKIMIKNIDKN MFEFEKVTIDKKPLIRSTYMSYDASMLQLPQVDAFVNLMLNFIR >gi|224999919|gb|ACJC01000081.1| GENE 6 4159 - 5367 1127 402 aa, chain + ## HITS:1 COG:SA0628 KEGG:ns NR:ns ## COG: SA0628 COG0477 # Protein_GI_number: 15926350 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 401 1 401 404 568 84.0 1e-162 MFTALLQIKNYKLFVVNMLLLGMGIAVTVPYLILFATKDLGMTTTQYGLLLALAAISQFI VNSIIARFSDTHHLNRKILIITALFMGAVSFSIYFYVHQIWLFIVLYALFQGLFAPAMPQ LYASARESINASSSRDRAKFANTVLRSMFSLGFLFGPFIGAQLIELKGYSGLFGGTIAII LFTLILQVFFYKNLPVKNQISEQQHIEKIAPNMFKDKSLFIPFIAFILLHIGQWMYTMNM PLFVTDYLNEKERYVGYLASLCAGLEVPFMVILGILSAKLPTRTLLIIGSVFGGAFYFSI GVFKNFHMMLVGQICLAIFLAILLGLGISYFQDILPDFPGYASTLFANAMVIGQLGGNLL GGVMSHWVGLENVFFVSASSIFVGMILILFTKDQKITIEDVE >gi|224999919|gb|ACJC01000081.1| GENE 7 5374 - 5862 379 162 aa, chain + ## HITS:1 COG:SA0629 KEGG:ns NR:ns ## COG: SA0629 COG2839 # Protein_GI_number: 15926351 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 162 1 162 162 149 69.0 2e-36 MTAILWILIIIAFALAFIGLIKPVIPSLLMLWIGFLIYQFGFHDGRLSWIFYVAMIIFTI MILVADFVMNKYFVNRFGGSKIGEYTALIGVIVGCFVFPPFGIIIIPFVAVFIVELVQGF NFQQAIKVSFGSVIAFLASTVAQGLIMIVMVIWFFLDVFLIN >gi|224999919|gb|ACJC01000081.1| GENE 8 5918 - 6607 355 229 aa, chain - ## HITS:1 COG:no KEGG:SERP0331 NR:ns ## KEGG: SERP0331 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 229 1 229 229 404 99.0 1e-111 MKSTAQLTKENNVKALRLNNTDREIFENYMTYVRADLRVNPHDSELMLNRTLKHLIRAGD TGMLAMEFFNHDPKAHAKKEIRALPNETFKNIFKYISHNFILLIGIFCFLKGLIGFFIGG DSNLLYLYTFPLTVIIGLVIIFLFIWMNFKTVQLQCFNNSYWTWWLTYGVIALLLITLFY VFFIPQSFLAFGPYIKVSNWTFIIIAIIITPISFYVNHHFYNKEANTRI >gi|224999919|gb|ACJC01000081.1| GENE 9 7049 - 7468 396 139 aa, chain + ## HITS:1 COG:no KEGG:SERP0332 NR:ns ## KEGG: SERP0332 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 139 1 139 140 113 95.0 2e-24 MRKWLTLLLITTLVLTACGKSNEKASLEKSIDQLKKENKDLKKQKKKLQEQKDKLKHKQD SLQEDVNELPAKSTSRDKKNKDNHDAKEKSSNNQSTSANHDDQTNKIKSNQDEHDGQSSK PHTQQKPSEDNRKNNHRQE >gi|224999919|gb|ACJC01000081.1| GENE 10 7602 - 7898 412 98 aa, chain + ## HITS:1 COG:no KEGG:SERP0333 NR:ns ## KEGG: SERP0333 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 98 1 98 98 179 98.0 4e-44 MHEQDFNILEGKKMTLVELGRELENLTGRTIKDTTGDIKRVIAHLPNFESDTDTFVATYH LNHQNDFIDATFVAPKNQSDRLKEIPVHIKLISYISKN >gi|224999919|gb|ACJC01000081.1| GENE 11 8024 - 8572 190 182 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227379366|ref|ZP_03862824.1| acetyltransferase, ribosomal protein N-acetylase [Kribbella flavida DSM 17836] # 1 161 1 161 185 77 32 4e-14 MVIYIETERLNLRDWKTEDLLPFQKMNANTQVRRYFPSLLSYRRSEIDMESMDSIIQESG LGLFAVELKETGEWLGFIGVNYVSKDSHYPFKELPFYEIGWRLIPEVWGNGLATEGAEAV MKYARDKGIKELYSFTSENNLPSRKVMEKLGMTFLDHFEYPNLSKYHPLKRHVRYYKELL PS >gi|224999919|gb|ACJC01000081.1| GENE 12 8891 - 9457 757 188 aa, chain - ## HITS:1 COG:SA0635 KEGG:ns NR:ns ## COG: SA0635 COG1611 # Protein_GI_number: 15926357 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Staphylococcus aureus N315 # 1 188 1 188 188 321 82.0 5e-88 MKRIAVYCGASKGKDPSYVKEAYELGKYMAEQGYELVFGAGSVGIMGAIQDGVLEHGGKA IGVMPKMLDEREITSQKVSELILVDSMHERKNKMTELADAFIMAPGGAGSLEEFFEMYSW AQIGIHQKPIGVFNLNGFFEPLQHLIDHMIKEGFIDEKYQKLAPLYDTKESLIEGLKHYK PLGVRTYD >gi|224999919|gb|ACJC01000081.1| GENE 13 9468 - 9917 347 149 aa, chain - ## HITS:1 COG:SA0636 KEGG:ns NR:ns ## COG: SA0636 COG1671 # Protein_GI_number: 15926358 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 149 2 148 152 213 70.0 1e-55 MKTNVIIDGDACPVVNSVIELTKGTGIFVTILRSFSHFSQQIQPEHVKTVYVDDGPDAVD YKIVELASNNDIVITQDYGLASLLIDKVHTVMHHKGNIYHSDNIQSLLDQRYLNAQTRRR GGRHKGPPPFTTEDRLKFEQAFRKIINQI >gi|224999919|gb|ACJC01000081.1| GENE 14 9920 - 10600 906 226 aa, chain - ## HITS:1 COG:no KEGG:SERP0337 NR:ns ## KEGG: SERP0337 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 226 1 226 226 224 99.0 2e-57 MDKKKLIKTLINVLPIVIVPLVTERKRIKKHPDVQKVTNATSKATSKTTSAISNKASDVK EYVGDKKQEFDNKRELKKIAKENDPAYIEKKGEKLAKQNRKEADKMDKKLQKNIEKRHKE EQKQREANQKQRIKDMKKSQKYEEQVGLTPGKIDHEIEKKGEKLEKDNRKDIKKLDKKLQ KNIEKRHKEEQKQREEAEKARKKEFKKYENYVADSVVKQHKESNHS >gi|224999919|gb|ACJC01000081.1| GENE 15 10796 - 11260 452 154 aa, chain + ## HITS:1 COG:BS_yosT KEGG:ns NR:ns ## COG: BS_yosT COG3449 # Protein_GI_number: 16079059 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Bacillus subtilis # 1 150 1 148 149 97 36.0 1e-20 MKYKIEKLDDSSVVYMRMIGTYQSDENFEMMKTFKHWIHTNHYWKYVEKYGVLGIALDNP LHVQSNQCRYDVVLRIDETVNDQTISKRNFIGGIYAVFKISHTKRNIENFFSHLENILNE THLRMRNEPIIERYIEEEGTDKVCEMLVPIYEVN >gi|224999919|gb|ACJC01000081.1| GENE 16 11553 - 12425 972 290 aa, chain - ## HITS:1 COG:SA0638 KEGG:ns NR:ns ## COG: SA0638 COG1968 # Protein_GI_number: 15926360 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Staphylococcus aureus N315 # 1 290 1 291 291 460 87.0 1e-129 MFLLELIKGIILGIVEGLTEFAPVSSTGHMILVDDMWLKSTNFLGSQSAFTFKVVIQLGS VFAAAWVFRERFLEILHIGQHKPEPSTAGDRRSKPRRLNLIHVLVGMVPAGILGFLFDDL IEKYLFSVPTVLIGLFIGAIYMIIADKYSKTVQHPQTVDQINYFQAFVIGISQAIAMWPG FSRSGSTISTGVLMKLNHKAASDFTFIMSVPIMLAASGLSLLKHYEYIHLAHIPFYILGF LAAFIVGLIAIKTFLHLINKVKLVPFAIYRIVLVIFIAILYFGFGIGKGI >gi|224999919|gb|ACJC01000081.1| GENE 17 12843 - 14270 173 475 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 271 462 17 222 245 71 26 4e-12 MLIQVLGDHLAFKVKHMLREQVILKKSVRSIGEEINILTESIDGIGPFFQSYLPQVFKSM LIPIVIIITMCFVHLPTAIIMIVTAPFIPLFYVIFGLKTRDESKDQMTYLNQFSQRFLNT AKGLITFKLLNQTKHSEQQLYKDSTRFRDLTMRILKSAFLSGLMLEFISMLGIGLVALEV ALSLVVFNHINFVTAAIAIILAPEFYNAIKDLGQAFHTGKQSEGSSDVVFSFLESEDKAD SPTLKVDEKQFEQVLIKHVDFQYANSNHMALKNISFSVNKGEKVAIVGPSGAGKSTLAKL LSQSVTPTHGTLSFNQASLNIGFLSQRPYIFADSIKNNIAMYDDEICDAQVIQVLDEVGL KEKVLSLKYGIYTSIGEGGEMLSGGQMRRIELSRLLLLKPDIVIFDEPAIGLDIETEKVI QQVLEHHFSTTTAFIIAHRDSTIRSSARRIYLESGHLIKDDSIISVSRSEVTIDQ >gi|224999919|gb|ACJC01000081.1| GENE 18 14267 - 15961 1365 564 aa, chain + ## HITS:1 COG:SA0640 KEGG:ns NR:ns ## COG: SA0640 COG4987 # Protein_GI_number: 15926362 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components # Organism: Staphylococcus aureus N315 # 1 556 1 556 557 642 58.0 0 MKSRIHFSIDRDLICAIMVGVLGGIIALAMFFLSGYMITQSALGAPLYALMILVVSVKLF GFLRAITRYIERLLSHKTTFTMLRNVRVQFLKMLYPVVPDIYRRFNSSDLITKMISRVEA LQNIYLRVYYPPIVIGLTAIVSVITMLFLSPLHALVITLSMLLTLWIVPWLSAKKARKLK QQVTQTQKIFLKRYYDYKEGHEELKRFNRSDDFKNTVSHALRQFDDMQLKERRFLSIYDY LLNLIAMFSIFMCLVLGAQQIHDGQLNAIYITSIILMILTLFEQAVPMSNVAYYKADTDQ ALEEIHEVIVPNYKILSEHTNLKCSQNHLLEIKNVTFKYEHQHHSILKQINLTVEYGDKV AIIGPSGSGKSTLLQVLLGLYQIGEGEVRLKGKDMNSINDNEKYQTFNAMLQSQYIFDGS IRDNLFSEQSDDNLKKVLGDVGLEYLNLDRIVTLDGHNLSGGEAQRLSLARLLLRPSADF WILDEPTTALDINNTQKIINLIESLSQTLIIATHDLEILPRFNKIIVMNDGEIIENGSYQ ELMQHDGYLKKVIEMNRNEMKFFN Prediction of potential genes in microbial genomes Time: Sun May 29 07:33:49 2011 Seq name: gi|224999918|gb|ACJC01000082.1| Staphylococcus epidermidis W23144 contig00122, whole genome shotgun sequence Length of sequence - 14483 bp Number of predicted genes - 14, with homology - 14 Number of transcription units - 9, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 87 - 126 4.1 1 1 Tu 1 . - CDS 208 - 651 483 ## COG1846 Transcriptional regulators - Prom 768 - 827 8.8 + Prom 793 - 852 6.0 2 2 Op 1 . + CDS 873 - 1799 747 ## COG0523 Putative GTPases (G3E family) 3 2 Op 2 . + CDS 1820 - 2113 319 ## SE0460 hypothetical protein + Prom 2124 - 2183 8.0 4 3 Op 1 . + CDS 2242 - 3183 1227 ## COG0039 Malate/lactate dehydrogenases + Prom 3229 - 3288 9.8 5 3 Op 2 1/0.500 + CDS 3316 - 4872 1711 ## COG0471 Di- and tricarboxylate transporters + Term 4908 - 4957 11.2 + Prom 4875 - 4934 6.8 6 4 Tu 1 . + CDS 5068 - 6441 1226 ## COG0415 Deoxyribodipyrimidine photolyase - Term 6433 - 6487 7.9 7 5 Op 1 . - CDS 6491 - 6760 147 ## SERP0350 hypothetical protein 8 5 Op 2 . - CDS 6757 - 7374 436 ## COG4330 Predicted membrane protein - Prom 7410 - 7469 5.4 + Prom 7619 - 7678 8.0 9 6 Tu 1 . + CDS 7788 - 8951 1307 ## COG0477 Permeases of the major facilitator superfamily + Term 9079 - 9135 11.2 + Prom 9199 - 9258 10.1 10 7 Tu 1 . + CDS 9337 - 9807 333 ## SERP0354 hypothetical protein + Term 9812 - 9851 5.2 + Prom 9834 - 9893 5.2 11 8 Tu 1 1/0.500 + CDS 9920 - 10402 559 ## COG2606 Uncharacterized conserved protein + Prom 10503 - 10562 6.6 12 9 Op 1 10/0.000 + CDS 10659 - 11417 761 ## COG1349 Transcriptional regulators of sugar metabolism 13 9 Op 2 19/0.000 + CDS 11414 - 12334 1125 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 14 9 Op 3 . + CDS 12340 - 14289 2269 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 14339 - 14402 11.1 Predicted protein(s) >gi|224999918|gb|ACJC01000082.1| GENE 1 208 - 651 483 147 aa, chain - ## HITS:1 COG:SA0641 KEGG:ns NR:ns ## COG: SA0641 COG1846 # Protein_GI_number: 15926363 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 147 1 147 147 244 95.0 4e-65 MSEQHNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLTILWDESPVNVKKVVT ELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSEMIRPELSNASEKVATAS SLSKDEVKELNRLLGKVIDAFIETKEK >gi|224999918|gb|ACJC01000082.1| GENE 2 873 - 1799 747 308 aa, chain + ## HITS:1 COG:SA0642 KEGG:ns NR:ns ## COG: SA0642 COG0523 # Protein_GI_number: 15926364 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Staphylococcus aureus N315 # 1 308 1 308 308 353 55.0 2e-97 MKNNKNEKLKITIVSGFLGSGKTTFLTHYINELLKIDEKTTVIMNEFGSFDVDGNHLSEL VKVYPLLNGCVCCDMKSDLVQQIEMLSHNHETNHIIIEATGIAHPIELIMACQDPRIVQF VERPHVVSIVDALRFLQRQQYTDSTKRLMEEQLEVSDVLVVNKLDLITVEDRDTLKKQLN EVNKYSSKIYTTYGQVNIDEMSQFRDQLVMTHTHSHHHGINSMQYTFTTAIDRQLFYQFI LRMPDNVLRLKGYVQFKDEPNVTYEFQYSFGMPDYEVINGNYPLTIVLIGEQLDVNRLKN KLDMLQFS >gi|224999918|gb|ACJC01000082.1| GENE 3 1820 - 2113 319 97 aa, chain + ## HITS:1 COG:no KEGG:SE0460 NR:ns ## KEGG: SE0460 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 97 4 100 100 116 98.0 3e-25 MNEDNRNKQIKFERNLITFPYLGFAFVVLLFNIFYTDVKITMVLFGLFFAYNLGMLFIAF IRHFKRTLILTLILTILSGIAFFVLLYVFGLNHDIFG >gi|224999918|gb|ACJC01000082.1| GENE 4 2242 - 3183 1227 313 aa, chain + ## HITS:1 COG:BS_citH KEGG:ns NR:ns ## COG: BS_citH COG0039 # Protein_GI_number: 16079964 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Bacillus subtilis # 4 310 5 311 312 371 59.0 1e-103 MVNRRKISIIGAGHTGGTLAFILAQKELAEIVLIERQQSEGMAKGKALDILESGPIWGFD TPIHGSVNIEDIKDSDVVVMTAGIPRKSGMTREDLVQTNEQIVRETALQIATYAPQSIII VLTNPVDVMTYTAFKASGFPEERIIGQSGILDAARYRTFIAQELNVSVKDVSGFVLGGHG DTMLPLVNTTHINGIPVKHLISKEKIDQIVERTRKGGAEIVELLGQGSAYYAPATAIYET IDAIFNDRKRLLPSIAYLEGEYGCSDICFGVPTIIGYQGIEKIIEVDMNNDEYQQLQHSA QAVSEVKNSLKFK >gi|224999918|gb|ACJC01000082.1| GENE 5 3316 - 4872 1711 518 aa, chain + ## HITS:1 COG:SA0645 KEGG:ns NR:ns ## COG: SA0645 COG0471 # Protein_GI_number: 15926367 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 25 518 24 517 517 714 88.0 0 MAKGDQYQAHTEKYHDKKSKKNYKPVWIIISFIILITILLLPTPAGLPVMAKAALAILAF AVVMWVTEAVTYPVSATLILGLMILLLGLSPVQDLSEKLGNPKSGDIILKGSDILGTNNA LSHAFSGFSTSAVALVAAALFLAAAMQETNLHKRLALLVLSIVGNKTRNIVIGAILVSIV LAFFVPSATARAGAVVPILLGMIAAFNVSKDSRLASLLIITAVQAVSIWNIGIKTAAAQN IVAINFINQNLGHDVSWGEWFLYAAPWSIIMSIALYFIMIKFMPPEHDEIEGGKELIKKE LNKLGPVSHREWRLIVISVLLLFFWSTEKVLHPIDSASITLVALGIMLMPKIGVITWKGV EKKIPWGTIIVFGVGISLGNVLLKTGAAQWLSDQTFGLMGLKHLPIIATIALITLFNILI HLGFASATSLASALIPVFISLTSTLNLGDHAIGFVLIQQFVISFGFLLPVSAPQNMLAYG TGTFTVKDFLKTGIPLTIVGYILVIVFSLTYWKWLGLV >gi|224999918|gb|ACJC01000082.1| GENE 6 5068 - 6441 1226 457 aa, chain + ## HITS:1 COG:SA0646 KEGG:ns NR:ns ## COG: SA0646 COG0415 # Protein_GI_number: 15926368 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Staphylococcus aureus N315 # 1 457 1 457 457 590 64.0 1e-168 MAIGVILNRVFRINNNPLFDYIYRNKESINQCYFIIPTEEFEEEAKKKAQYYYGSIQKFM YKLQRYDIEPFLMSYDKLIDFCKKQTIDKVVVAGDIMSYHHEEYDILHQRKRFKQADIQV ITLRANHYFKPCKTHNKQGEPYKVFTSFYRKWRPYLMIRDEYDYHLEDITKVAVKSQHKI KEDYHSYGISERDVQNRWSEFLSQDIENYKENREYLPEVLTSQLSIYLAYGMIDIIQVFN DLLQNYDKNEQNYEAFIRELIFREFYYVLMTNYPETAHVAFKEKYQQLKWSYNEENFKLW KDGNTGFPIIDAAMEELKTTGFMHNRMRMVVSQFLTKDLFIDWIWGESFFKQKLIDYDAA SNVHGWQWSASTGTDAVPYFRMFNPIRQSERFDNNARYIKTYIPKLNQIDAKYLHDTHKF EQQIKGQGVEIGKDYPKQMIDHKESRQRVMSEFKALD >gi|224999918|gb|ACJC01000082.1| GENE 7 6491 - 6760 147 89 aa, chain - ## HITS:1 COG:no KEGG:SERP0350 NR:ns ## KEGG: SERP0350 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 89 1 89 89 105 95.0 4e-22 MMIEVILMVCLIMIQLMIGHLWHQIGWSYTKAILLMCLPLGIGLYLMQLFYYETRYTNWE VPFKTKLNLKYMYILTLLEYILIYVCFFM >gi|224999918|gb|ACJC01000082.1| GENE 8 6757 - 7374 436 205 aa, chain - ## HITS:1 COG:SA0648 KEGG:ns NR:ns ## COG: SA0648 COG4330 # Protein_GI_number: 15926370 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 203 2 204 206 184 65.0 9e-47 MQSRYFARIYFIILFAISMTESHIFNFMTLNLFLAYVPFELCLLLKLFKPVKAFEWPLFI VFGLIFLLLVPNTFYMITDLIHLNQFQFNFLAGLNITEWIYFTYLILGVLLAIYLTILIF LEIAHFTSYVWLNRLLIVILMFLNGLGIYIGRFLRLHTVYLLNAPLKIVKEVFLIIDVKA LLFVILMVLIQATVILFVKGVRFYQ >gi|224999918|gb|ACJC01000082.1| GENE 9 7788 - 8951 1307 387 aa, chain + ## HITS:1 COG:SA0650 KEGG:ns NR:ns ## COG: SA0650 COG0477 # Protein_GI_number: 15926372 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 387 1 387 388 563 80.0 1e-160 MKKQLFILYFNIFLIFLGIGLVIPVLPVYLKDLGLKGSDLGMLVAAFALSQMIISPFGGT LADKLGKKLIICIGLVFFSVSEFMFAAGQSFTILIISRVLGGFSAGMVMPGVTGMIADIS PGADKAKNFGYMSAIINSGFILGPGFGGFLAEISHRLPFYVAGTLGVVAFIMSVLLIHNP HKATTDGFHQYQPELFTKINWKVFITPVILTLVLAFGLSAFETLFSLYTADKVNYTPKDI SIAIIGGGVFGALFQVFFFDKFMKYMSELNFIAWSLLYSAIVLVMLVLANGYWTIMMISF VVFIGFDMIRPALTNYFSNIAGKRQGFAGGLNSTFTSMGNFIGPLVAGALFDVNLEFPLY MAIAVSLSGIIIIFIEKGLKSRRKEAN >gi|224999918|gb|ACJC01000082.1| GENE 10 9337 - 9807 333 156 aa, chain + ## HITS:1 COG:no KEGG:SERP0354 NR:ns ## KEGG: SERP0354 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 156 1 156 156 227 97.0 1e-58 MKLKNLFLSSVAVILSICLVLLLFLATNQNALAKVHKTICTFTKVKTVSHNNIFPNINMN HVAEASEKNSDHQKNVNKTNQQSVRTQTSYDFNPQECKVIALNYAENHLSKKYNIERTFN ESLHSVYVFSSENKLHQTKVKVNKSGTVHASNINYH >gi|224999918|gb|ACJC01000082.1| GENE 11 9920 - 10402 559 160 aa, chain + ## HITS:1 COG:SA0652 KEGG:ns NR:ns ## COG: SA0652 COG2606 # Protein_GI_number: 15926374 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 157 1 157 160 190 60.0 1e-48 MSKTKKTNAMRILDRAKINYQMNTYEVTDKHQHGEEIAQLVGAKIEEVFKTLVLENSNHE HYVFVIPVNETLDMKKAAHVVNEKKLNLMPLDQLKQVTGYVRGGCSPIGMKHSFKTTIDA SARNLEKVYISGGQRGMQIIIHVNDLIDMTKAQVESITQN >gi|224999918|gb|ACJC01000082.1| GENE 12 10659 - 11417 761 252 aa, chain + ## HITS:1 COG:SA0653 KEGG:ns NR:ns ## COG: SA0653 COG1349 # Protein_GI_number: 15926375 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Staphylococcus aureus N315 # 1 250 2 251 253 327 65.0 1e-89 MISEKRQNLILQELTQKDFLTLQDLVERTGCSASTIRRDLSKLQNMGKLQRVHGGATIHQ NRVKEPKLSEKRTQNLREKQEIAKRAACDIQDHECIFLDAGSSTFELIQYIEAKDITVVT NGMTHVEELLKHGIKTLMVGGQVKPTTMATVGANALETLRRYCFDRAFIGMNGIDVKYGL TTPDEQEALIKETAMKLSNHKYVLVDQSKFNQIYFARVPILDGLSIITSQKAMQSKMTEA YMNEFNFLGGKS >gi|224999918|gb|ACJC01000082.1| GENE 13 11414 - 12334 1125 306 aa, chain + ## HITS:1 COG:SA0654 KEGG:ns NR:ns ## COG: SA0654 COG1105 # Protein_GI_number: 15926376 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 306 1 306 306 457 80.0 1e-128 MIYTVTFNPSIDYIIFTDGFEIAGLNRAKATYKFAGGKGINVSRVLKTLDVDSTALGFSG GFPGDFITQTLEDSNIQSNFVQVDEDTRINVKLKSGQETEINAPGPKVTHAQFEQLLSQI RRTTKDDIVIVAGSVPNSIPSDAYAQIAQITEKTGAQLVVDAEKDLVETVLPYRPLFIKP NKDELEVMFNTTVKSDEEVIKYGKEILKKGAQSVIISLGGDGAIYVDQHQSIKAVNPQGH VVNTVGSGDSTVAGMVAGLSMGLNVDEAFQQAVASGTATAFSEDLATRDAIENIKSQVTI SVLDGE >gi|224999918|gb|ACJC01000082.1| GENE 14 12340 - 14289 2269 649 aa, chain + ## HITS:1 COG:SA0655_3 KEGG:ns NR:ns ## COG: SA0655_3 COG1299 # Protein_GI_number: 15926377 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 304 649 1 346 346 550 87.0 1e-156 MRITELLTKETIAMDLDASDKSGVITELVNQLDKAGKLSDPVSFKEAIHNRESQSTTGIG EGIAIPHAKVAAVKTPAIAFGKSKEGMDYQSLDMQPAHLFFMIAAPEGGAQTHLDALAKL SGILMDEKIREKLIHAESPEEVLNIIDEADDEATKEEEEANENATVSTDNSNQDNNEPYV LAVTACPTGIAHTYMARDALKKQAEKMNIKIKVETNGSSGIKNHLTEQDIERATGIIVAA DVHVETDRFDGKNVVEVPVADGIKRPEELINTALDTNRKPFVAQGGSKKRDDNEEKLSPG KAFYKHLMNGVSNMLPLVISGGILMAIVFLFGANSFKPDSSEYNAFAEQLWNIGRNSAFA LIIPILAGFIARSIADKPGFAAGLVGGMLAISGGSGFIGGIIAGFLAGYLTQGIKYITRK LPQAIEGLKPTLIYPLFSVSITGLLMVYVFNPPAAWLNHLLLNGLNSLSGSNIMLLGLVI GAMMAIDMGGPFNKAAYVFATAALTEGNAAPITAAMIGGMIPPLAIATTMLIFRRKFTKE QRGSIVPNYVMGLSFITEGAIPFAAADPLRVIPSMMVGSGVAGAIALGLGSSIKAPHGGI FVIVGTDFSHILQTLIALVVGTLVSALLYGFLKPKVTDNEIQASQAMDE Prediction of potential genes in microbial genomes Time: Sun May 29 07:33:56 2011 Seq name: gi|224999917|gb|ACJC01000083.1| Staphylococcus epidermidis W23144 contig00123, whole genome shotgun sequence Length of sequence - 1949 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1948 2229 ## SH2426 hypothetical protein Predicted protein(s) >gi|224999917|gb|ACJC01000083.1| GENE 1 1 - 1948 2229 649 aa, chain + ## HITS:1 COG:no KEGG:SH2426 NR:ns ## KEGG: SH2426 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 649 268 923 1855 664 63.0 0 PSTENKTTSSDIIEQPEASASIQNISEELNISSDDIVQALENAGVDVSNVTEVEAIAALI QNGYVNNDNETPLATPLSVNLATARNEETTNTLRPRLFAADTPTNDNVSNTDNNRIIEAD ALKNGYINSTTDATNAANTLSGRAWMVDKGTPATMANGLTPVPEGTPVYMQWIDKDGVVS PIYKAATKSIEKSGGSQVGPGAYAFDLRKPYKDANGKEHTYRAANNQYYRIWIEDFKTHN GNTATMLRTAGGFLPGSYVDSSTSNNIGQFPLAGKNMQRTGIFMGIEPDGEYMTRPQSEW IHDTQGADAPLSTNSIQGRVWLETGTGGDLANSATGPSYNPAASDRIADGYTVVFSSLTN EGVQAYKNQVESLPKAEQADATKTLLKDHPEYISATVYGETNADGYYTVHFPTDKKINND YIYGYVMNPDGEKVLGYSSFTSPIFTGANSNLSFTPQTAPVSKPAKGGWYNVNFALIPTT DTKIDIVKYNNTTQPAQPGDTINIDLSGSQLSPLPSHIEWRDQEGKVIKKTDDITSYTDG EQKGTFVVPEAAKAGDVYTVYLVSGGKDVGSDSFVVATQEKSYHPKTDKVIKEYGDPTTE DDVTGAVTIPDYPSEKGKPTIKVDDPSKLPDGNTPGTSNVDVTVTYPDG Prediction of potential genes in microbial genomes Time: Sun May 29 07:34:05 2011 Seq name: gi|224999916|gb|ACJC01000084.1| Staphylococcus epidermidis W23144 contig00124, whole genome shotgun sequence Length of sequence - 1937 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 159 221 ## gi|242242064|ref|ZP_04796509.1| hypothetical protein HMPREF0791_0590 + Term 188 - 237 11.7 + Prom 237 - 296 6.0 2 2 Tu 1 . + CDS 322 - 702 403 ## COG1733 Predicted transcriptional regulators 3 3 Tu 1 . - CDS 1502 - 1786 143 ## gi|242242067|ref|ZP_04796512.1| hypothetical protein HMPREF0791_0593 - Prom 1834 - 1893 10.5 Predicted protein(s) >gi|224999916|gb|ACJC01000084.1| GENE 1 1 - 159 221 52 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242064|ref|ZP_04796509.1| ## NR: gi|242242064|ref|ZP_04796509.1| hypothetical protein HMPREF0791_0590 [Staphylococcus epidermidis W23144] # 1 52 1 52 52 80 100.0 2e-14 KDVDKDHSDKEALPQTGEQSNSNNATLFGSLFAGLGSLFLFGRRRKKDADNK >gi|224999916|gb|ACJC01000084.1| GENE 2 322 - 702 403 126 aa, chain + ## HITS:1 COG:MA0333 KEGG:ns NR:ns ## COG: MA0333 COG1733 # Protein_GI_number: 20089231 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Methanosarcina acetivorans str.C2A # 43 122 18 97 127 79 43.0 2e-15 MYLIIHESTLFYIGGVLWLKFVIMIFNRRLIEEGRDIYGIAYTQNILSGRYKNLIIWYLK EKDRRYKQIKKFLESISQCSLTKQLRELEDDNIISRTVYPEVSPKVIYALTEKGKDLIPI IDMVEN >gi|224999916|gb|ACJC01000084.1| GENE 3 1502 - 1786 143 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242242067|ref|ZP_04796512.1| ## NR: gi|242242067|ref|ZP_04796512.1| hypothetical protein HMPREF0791_0593 [Staphylococcus epidermidis W23144] # 1 94 13 106 106 163 100.0 3e-39 MNEVIYIHSKPIKIFFKIVSKKWITGMILVPFIYSTTISLSYSVITNPGFIIFSMISLYT LNFTILIQATININRSNDIDRYYGYYKCNCDKED Prediction of potential genes in microbial genomes Time: Sun May 29 07:34:17 2011 Seq name: gi|224999915|gb|ACJC01000085.1| Staphylococcus epidermidis W23144 contig00125, whole genome shotgun sequence Length of sequence - 8631 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 4, operones - 2 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 87 - 146 5.2 1 1 Tu 1 1/1.000 + CDS 249 - 1421 1288 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 1599 - 1632 -0.2 + Prom 1432 - 1491 8.1 2 2 Tu 1 1/1.000 + CDS 1700 - 3007 1299 ## COG1253 Hemolysins and related proteins containing CBS domains + Term 3026 - 3072 7.1 + Prom 3149 - 3208 8.2 3 3 Op 1 2/1.000 + CDS 3249 - 4088 853 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 4107 - 4165 5.0 + Prom 4151 - 4210 7.5 4 3 Op 2 . + CDS 4291 - 5397 795 ## COG0463 Glycosyltransferases involved in cell wall biogenesis + Term 5399 - 5463 19.9 - Term 5392 - 5447 18.4 5 4 Op 1 40/0.000 - CDS 5466 - 6209 658 ## COG0642 Signal transduction histidine kinase - Prom 6459 - 6518 5.8 6 4 Op 2 . - CDS 6521 - 7210 587 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 7 4 Op 3 . - CDS 7185 - 7658 494 ## SERP0366 hypothetical protein 8 4 Op 4 . - CDS 7709 - 8146 480 ## SERP0367 putative lipoprotein - Prom 8261 - 8320 15.9 Predicted protein(s) >gi|224999915|gb|ACJC01000085.1| GENE 1 249 - 1421 1288 390 aa, chain + ## HITS:1 COG:SA0656 KEGG:ns NR:ns ## COG: SA0656 COG1820 # Protein_GI_number: 15926378 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Staphylococcus aureus N315 # 1 389 1 392 393 544 69.0 1e-154 MSEYVLTNGIVYTENEMINNGYVHIKDGKILDVGKCPFHPSSSHNTIDIIDVKKRHILPG FIDIHIHGGYGEDAMDASEQGLQHLAESLLSEGTTSFLATTMTQSTVNIERALQTIAKYT QQQDVTNAAEIVGVHLEGPFISEHKVGAQHPQFVQRPTVDKIKSFQKVANGLIKIITYAP EVDGATETLKTMKNDIIFSIGHTVATFDQANAAVSHGAKHITHLYNAATGFQHREPGVFG AAWLNQGLHTEMIVDGIHSHPASIALAYRLKGNQSCYLITDAMRAKGMPEGHYDLGGQDV IVKGSEARLSSGALAGSILKMNEGLKNLIQFTGDTIEHLWRVTSLNQAVTLGIDDVKGSI KIGKDADIVIIDDACNVETTIKNGKYHAFK >gi|224999915|gb|ACJC01000085.1| GENE 2 1700 - 3007 1299 435 aa, chain + ## HITS:1 COG:SA0657 KEGG:ns NR:ns ## COG: SA0657 COG1253 # Protein_GI_number: 15926379 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Staphylococcus aureus N315 # 5 435 19 449 449 751 86.0 0 MIALTTVFVGSEFALVKVRSTRIEQLVDEGNKSAKIVKKMIDNLDYYLSACQLGITVTSL GLGWLGEPTFEKMMHPLFELLHLPSPLTTTISFVVSFIVVTYLHVVLGELAPKSFAIQHT EQLALLYSRPLFYFGNFMKPLIWLMNGSSRVIVRMFGFDPDAQTDAMSEEEIKIIINNSY NGGEINQTELAYMQNIFSFDERHAKDIMVPRTQMVTLNEPFNVDELLDTIKEHQFTRYPI TEDGDKDHVKGFINVKEFLTEYASGKPIKIANYIHELPMISETTRISDALVRMQREHVHI SLIIDEYGGTAGILTMEDILEEIVGEIRDEFDDDEVNDIVKLDDHTYQINGRVLLDDLNE KFDIEFEDSEDIDTIGGWLQSQNTNLQKDDFVDTEYDRWTITEIDNHQIIWVNLNYEFNS GRPSVDEEQEDDERD >gi|224999915|gb|ACJC01000085.1| GENE 3 3249 - 4088 853 279 aa, chain + ## HITS:1 COG:SA0658 KEGG:ns NR:ns ## COG: SA0658 COG0656 # Protein_GI_number: 15926380 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Staphylococcus aureus N315 # 1 279 1 279 279 450 74.0 1e-126 MTNDVQILNNGYPMPAVGLGVYKIADDQMEEVVRTALDAGYCAFDTAYFYGNEKALGSAL KQSNIERDELFITSKLWNDYQGYDQTIEYFNKSLDNLGLDYLDLFLIHWPCENDQLYIES YKALEHLYEEGKIKAIGVCNFKIHHLEKLMRETKITPQVNQIELHPYFNQQDVQDFCDEH DIKVTAWMPLMRNKGLLDDPVITDIAHRYDKTPAQIVLRWHLAHNRIIIPKSQTPQRIKE NFDIFDFNLELTDVAEIDSLNKNARQGKDPDDVSIGDLK >gi|224999915|gb|ACJC01000085.1| GENE 4 4291 - 5397 795 368 aa, chain + ## HITS:1 COG:SA0659 KEGG:ns NR:ns ## COG: SA0659 COG0463 # Protein_GI_number: 15926381 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 1 313 1 313 327 483 72.0 1e-136 MKIRVIVPCYNEGEVVLKTYDKLTEIMKKDSLIKNYEYDLLFINDGSIDTTIHHIKNIVA YDNHVKYLSFSRNFGKEAAMIAGYEHSTMHDAVIMIDGDLQHPPEYIPQMIEGYIEGYDQ VIAKRNRQGENFVRKTLSRCYYKLINAFVEDIQFEDGVGDFRLLSRRAVQALTTLDEYNR FSKGLFEWIGYETKVFQYENVTREDGESKWTFRKLLNYGIDGLISFNNKPLRMMIYLGMF TFSISILYIIYLLINILINGINIPGYFTTIAAILLLGGIQLMSIGVVGEYIGRIYYEVKH RPKYIVENSNIQTENLDMRYNALNLNKNRNNKRSNDLYKLSSFYKVKTYSDTYASNYSQE EGFKERVH >gi|224999915|gb|ACJC01000085.1| GENE 5 5466 - 6209 658 247 aa, chain - ## HITS:1 COG:SA0660 KEGG:ns NR:ns ## COG: SA0660 COG0642 # Protein_GI_number: 15926382 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 243 105 347 351 358 78.0 7e-99 MAYEINNQMNMIKNEQQEKTEIIQNLAHDLKTPLAGIRSYSEGLRDGVISNPQEVHEAYE TLIKQANRLSILFDDITHVINLNTGRSYPLELIQLDQLLVNILQPYEQHIKQENRTLEVN FCTDIDAFYQYRPPIERILTNLLDNALKFSNSGSRIDIIISECKENDAISIAIKDEGIGI VPELQSRIFERTFRVEDSRNTKTGGSGLGLYIANELAQQIDASITVQSDLDIGTTMTLTL KKFQFKK >gi|224999915|gb|ACJC01000085.1| GENE 6 6521 - 7210 587 229 aa, chain - ## HITS:1 COG:SA0661 KEGG:ns NR:ns ## COG: SA0661 COG0745 # Protein_GI_number: 15926383 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 229 1 228 228 365 83.0 1e-101 MTHLLIVDDEKDIVDICQTYFEYEGYQVTTTTCGKEALKLLSSDIDIMILDIMMPEVNGY DIVKKMKDMQLDIPFIYLTAKTQEHDTIYALTLGADDYIKKPFSPRELVLRTNNLLARLS KSNYSNKIEQLEFDGLVLKNLSKTLTINNIEIPMRIKEFELLWYLASREGEVISKSELLE KVWGYDYYEDANTVNVHIHRIREKLEKHDFLPYTITTVWGLGYKFERSR >gi|224999915|gb|ACJC01000085.1| GENE 7 7185 - 7658 494 157 aa, chain - ## HITS:1 COG:no KEGG:SERP0366 NR:ns ## KEGG: SERP0366 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 157 1 157 157 294 100.0 7e-79 MKKISLFIIFLIRVISGIVIFRQGWEKFTGDFTLNGLVPVIRDNTDSPQWYKWFFEHIVA HTTGLFNIIVPLGEMAIGLGLILGIFAYAASFFGAFVMINYILADMIFTYPLQLAFFIIL LMSHSLLAKVSLKEIIAYFRDRNNRGEDKHDPLTNRG >gi|224999915|gb|ACJC01000085.1| GENE 8 7709 - 8146 480 145 aa, chain - ## HITS:1 COG:no KEGG:SERP0367 NR:ns ## KEGG: SERP0367 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 145 1 145 145 227 98.0 1e-58 MNTKYLLAVGAIVTSLTLGACGNSNSESDHANHKDKQQEESNVKTDTTKKLSGNFESKNG EKVEGKAKIENGKLMLENYKSSKGPDLYVYLTKNGDIKSGKKISTVDYNKSKQTFDLKNV DIEKYNEVTIYCEKAHVIFGGAKLK Prediction of potential genes in microbial genomes Time: Sun May 29 07:34:27 2011 Seq name: gi|224999914|gb|ACJC01000086.1| Staphylococcus epidermidis W23144 contig00126, whole genome shotgun sequence Length of sequence - 9644 bp Number of predicted genes - 12, with homology - 11 Number of transcription units - 4, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 27 - 626 205 ## SERP0370 hypothetical protein - Prom 652 - 711 4.5 2 1 Op 2 22/0.000 - CDS 726 - 1439 658 ## COG0602 Organic radical activating enzymes 3 1 Op 3 11/0.000 - CDS 1440 - 1859 432 ## COG0720 6-pyruvoyl-tetrahydropterin synthase 4 1 Op 4 . - CDS 1864 - 2535 830 ## COG0603 Predicted PP-loop superfamily ATPase - Prom 2570 - 2629 7.3 + Prom 2743 - 2802 7.9 5 2 Op 1 35/0.000 + CDS 2831 - 3418 523 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 6 2 Op 2 9/0.000 + CDS 3408 - 4559 740 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 7 2 Op 3 . + CDS 4561 - 5169 468 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 8 2 Op 4 . + CDS 5218 - 5424 217 ## SERP0376 hypothetical protein 9 2 Op 5 21/0.000 + CDS 5443 - 6174 746 ## COG2049 Allophanate hydrolase subunit 1 10 2 Op 6 . + CDS 6162 - 7166 917 ## COG1984 Allophanate hydrolase subunit 2 - Term 7162 - 7195 -0.9 11 3 Tu 1 . - CDS 7345 - 7512 60 ## - Prom 7532 - 7591 5.3 + Prom 7572 - 7631 5.7 12 4 Tu 1 . + CDS 7675 - 9615 1738 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily Predicted protein(s) >gi|224999914|gb|ACJC01000086.1| GENE 1 27 - 626 205 199 aa, chain - ## HITS:1 COG:no KEGG:SERP0370 NR:ns ## KEGG: SERP0370 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 199 1 199 199 226 97.0 4e-58 MIIYILINIAIVLLILGIDLYRHRFRQLKFSSILLSILINSVIDIFAINQFNFITMFTVT LFMIWTLLQIYLNFKLYPFVISDQKFIAIILAIVISLLQFITDKSSTQSVYMSIPYLSPT IFIIGAILLFVGTFKIDEVERLSLFRKIKRPMTTGTIIIILSLISTMILTPFWYVFLIIY SLLIGFILWQGVFFIKNKK >gi|224999914|gb|ACJC01000086.1| GENE 2 726 - 1439 658 237 aa, chain - ## HITS:1 COG:SA0665 KEGG:ns NR:ns ## COG: SA0665 COG0602 # Protein_GI_number: 15926387 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Staphylococcus aureus N315 # 1 237 1 237 237 428 84.0 1e-120 MAKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDYRCSWCDSAFTWDGSAKEDIKLMTAE EIYEALLEIGGHRFNHVTISGGNPALIKGIQELVNLFEEKHIYTALETQGSRFQSWMTQI DDLTISPKPPSSGMKTNLEVLDSVINQCTFHSLNLKVVIFDDADYDFAKLIHHRYPNIPF YLQVGNPYLDDNVDQHTDKLLERYEKLVDRVMQSSDMNHVYVLPQLHTLLWSNKKGV >gi|224999914|gb|ACJC01000086.1| GENE 3 1440 - 1859 432 139 aa, chain - ## HITS:1 COG:SA0666 KEGG:ns NR:ns ## COG: SA0666 COG0720 # Protein_GI_number: 15926388 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Staphylococcus aureus N315 # 1 136 2 137 139 199 72.0 1e-51 MQQIYPSVTHPYQFELNKDFNFSAAHYIPFEEAGKCIRTHGHTYYVNLTIAGNTLDKCGF LVNFRDLKKLVHEQFDHYLLNDLPAFKDKSPSTEIVAQTIYHIVQKELNQRENQPKCVQV YLRETPSSYVVYRPKEDQV >gi|224999914|gb|ACJC01000086.1| GENE 4 1864 - 2535 830 223 aa, chain - ## HITS:1 COG:SA0667 KEGG:ns NR:ns ## COG: SA0667 COG0603 # Protein_GI_number: 15926389 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Staphylococcus aureus N315 # 6 221 5 220 222 407 87.0 1e-113 MSQNDLNKEKALVVFSGGQDSTTCLFYAKKHFKEVELVTFNYGQRHDTEIEVAKKIAKEQ NLKHHILDMSLLSQLTPNALTQHELKIEDNDDGIPNTFVPARNLLFLSFAGALAYQIHAK HIITGVCETDFSGYPDCRDSFIKSMNVTLSLSMDKDFVIHTPLMWLDKAQTWALSDKLGV LDYIRHNTLTCYNGIIGDGCGECPACHLRARGLKHYLEHKGEE >gi|224999914|gb|ACJC01000086.1| GENE 5 2831 - 3418 523 195 aa, chain + ## HITS:1 COG:SA0668 KEGG:ns NR:ns ## COG: SA0668 COG0512 # Protein_GI_number: 15926390 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Staphylococcus aureus N315 # 1 190 1 190 197 254 63.0 8e-68 MILMIDNQDSFTYNLIDYIKVQTTEEVKIISVNDLMIQHIDALNPRAIVISPGPGKPSDY PILSSVLEIFHRHVPILGVCLGFQLIIEYFGGNIIHNDKPVHGHITKISHSNEGIFKGLP LYFNVMRYHSLMADPSTISSALKVTALNNENVIMAVAHRKYPIYGLQYHPESILSEYGHE QLNLFLTEVGVKYAH >gi|224999914|gb|ACJC01000086.1| GENE 6 3408 - 4559 740 383 aa, chain + ## HITS:1 COG:SA0669 KEGG:ns NR:ns ## COG: SA0669 COG0147 # Protein_GI_number: 15926391 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Staphylococcus aureus N315 # 1 383 1 383 383 417 56.0 1e-116 MHIEFKYRYYENEKDYEDYQLEMDNVQDSKIAYRLDEVGDVIHFAEQEQRNGSYVALYVT YEAAPFFNKEMVVNIVEQSHIFAAAYSFKSVNSIKNIKKVMSTKNHIKTEGFYFCESDKA MINKVKSIHKAIIEGATYQVNYTTRLKAEIFCPISHLYHQLTMSQNGNYTVLMDTPDIKV ASISPELFFQKGDYKGKSNMIVSKPMKGTMPRGKNVKEDELYYNNLKTSSKDMAENVMIV DLLRNDITRIAQSGTIDVPELFSIEKYDTVFQMTSTVCGQLQDDIQLIDMMRALFPCGSI TGAPKINTMQYIAQLEDMPRSIYCGTIGLLLPNQRMIFNIPIRTIEYNHEEAVYGVGAGI TIDSIPENEVQEFHDKTKILERL >gi|224999914|gb|ACJC01000086.1| GENE 7 4561 - 5169 468 202 aa, chain + ## HITS:1 COG:SA0670 KEGG:ns NR:ns ## COG: SA0670 COG0115 # Protein_GI_number: 15926392 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Staphylococcus aureus N315 # 1 200 1 200 202 192 50.0 4e-49 MHLFETMKLDRGFIPRLEYHYQRISTSSEHLGFQFDHLLWKQFIHNIKTLHSKGVYRLKV TLNKEGELNYELFPIPDKPFFTARLVQQKKNIDKVIITNKTTERDYLTHNHFTDLILIYD EEGKILEFDIGNVMIQERDKLYTPTYKEDMLPGCMRQSLIDQGEVIEKDFYIEEFKEKIK SSQINVYLINSLREVVGVKVYV >gi|224999914|gb|ACJC01000086.1| GENE 8 5218 - 5424 217 68 aa, chain + ## HITS:1 COG:no KEGG:SERP0376 NR:ns ## KEGG: SERP0376 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 68 1 68 68 76 100.0 3e-13 MTLLWLAILILLTVLGKKMSNQAIKNNQVLIAKLIATITTFCAFVLVYLLMQSIMPHIIK LMNVFYHH >gi|224999914|gb|ACJC01000086.1| GENE 9 5443 - 6174 746 243 aa, chain + ## HITS:1 COG:SA0672 KEGG:ns NR:ns ## COG: SA0672 COG2049 # Protein_GI_number: 15926394 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Staphylococcus aureus N315 # 1 239 1 231 236 330 66.0 2e-90 MKIYSQGDQAIVVSIEKNVSQRLTEDLLSLRAYLIDKSYPFITEIVATESDLMICYDARD MIKHHHIQSPFLYMKALIDSIKLEIRHHRQQLQARYIQKQQSVNIPVIYGGEFGPDLQHL LKHLKLKLEDFVKLHTQEKYFVSMMGYSPGFPYLTGMNKKLHVNHTSKKKKFIPSGSVII EGKKCGIVTTDTYNDWLVIGYTPVQLFFPEQQNFTLLKLGDNVTFESKDINEIELGDYKT CQS >gi|224999914|gb|ACJC01000086.1| GENE 10 6162 - 7166 917 334 aa, chain + ## HITS:1 COG:SA0673 KEGG:ns NR:ns ## COG: SA0673 COG1984 # Protein_GI_number: 15926395 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Staphylococcus aureus N315 # 1 334 1 334 334 540 78.0 1e-153 MSIIIENSGLFSSFQDFGRKGYEHEGVIPSGALDELAHEIANRLVANDKNEATLEMTQKM ATIRFTEPALIALTGGNFKAETEHMKIYPNKLYLINEGETLKFNETSRTSRVYLAVGGGF KLEKWLHSASTDFNVEIGGFKGRKLKKGDEIELKHHYSQRHLKLFENLSDKRTTDWGIDG YALSFNYVSDVFHVIRNKGTEDFKKEATRRFTTAEYSVSSKTNRVGMVLDGPRIKAYYDD MPAHQSVKRGTIQVKRDGTPIVLLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSKLKFQF IDIETAEKNLIKYSNWLNQLFHGIEHRMQLEMLK >gi|224999914|gb|ACJC01000086.1| GENE 11 7345 - 7512 60 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRIRHCLDYVVVNFLLRFLNVCNLIVIKIHSSIYKYIVLCLKYQVKARYTGKLST >gi|224999914|gb|ACJC01000086.1| GENE 12 7675 - 9615 1738 646 aa, chain + ## HITS:1 COG:SA0674 KEGG:ns NR:ns ## COG: SA0674 COG1368 # Protein_GI_number: 15926396 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Staphylococcus aureus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rediction of potential genes in microbial genomes Time: Sun May 29 07:34:40 2011 Seq name: gi|224999913|gb|ACJC01000087.1| Staphylococcus epidermidis W23144 contig00127, whole genome shotgun sequence Length of sequence - 14099 bp Number of predicted genes - 10, with homology - 9 Number of transcription units - 7, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 365 - 1180 969 ## COG0428 Predicted divalent heavy-metal cations transporter - Prom 1213 - 1272 5.7 + Prom 1176 - 1235 7.5 2 2 Op 1 1/0.000 + CDS 1308 - 3191 2288 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains 3 2 Op 2 . + CDS 3205 - 4983 1180 ## COG0514 Superfamily II DNA helicase + Term 5068 - 5111 -0.4 4 3 Tu 1 . - CDS 5141 - 5326 76 ## - Prom 5352 - 5411 6.1 + Prom 5095 - 5154 6.8 5 4 Op 1 12/0.000 + CDS 5274 - 6158 720 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 6 4 Op 2 1/0.000 + CDS 6151 - 7665 1572 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) + Term 7683 - 7752 11.7 + Prom 7766 - 7825 7.9 7 5 Op 1 1/0.000 + CDS 7868 - 8923 1000 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase + Prom 8958 - 9017 4.7 8 5 Op 2 . + CDS 9045 - 9584 587 ## COG4502 Uncharacterized protein conserved in bacteria + Term 9596 - 9639 5.2 - Term 9584 - 9627 2.2 9 6 Tu 1 . - CDS 9651 - 12260 2611 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 12295 - 12354 7.4 - Term 12575 - 12611 2.1 10 7 Tu 1 . - CDS 12660 - 13583 793 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase - Prom 13649 - 13708 8.5 Predicted protein(s) >gi|224999913|gb|ACJC01000087.1| GENE 1 365 - 1180 969 271 aa, chain - ## HITS:1 COG:lin0435 KEGG:ns NR:ns ## COG: lin0435 COG0428 # Protein_GI_number: 16799512 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Listeria innocua # 10 271 10 269 269 270 60.0 2e-72 MSDLFQNAPPYIQALIAGIITWLLTALGAAAVFIFKKVNDKVLNSMQGFAAGIMIAASFW SLLQPAIESSENSAMPWLPAAIGFILGGVFIRVLDYIIPHIHQNAQDKNQQQEGVPTSLG KNALLVLAITLHNIPEGLSIGVAFGGVVSGNSHATFLGAIGLAIGIGIQNIPEGAALSMP IRAAGATRWKAFNYGQASAIVEPIFATIGAAAILVVNPILPYALAFAAGAMIFVVVEELI PDSQSSNNTDLATLSLMIGFTIMMILDVALG >gi|224999913|gb|ACJC01000087.1| GENE 2 1308 - 3191 2288 627 aa, chain + ## HITS:1 COG:SA0675 KEGG:ns NR:ns ## COG: SA0675 COG0488 # Protein_GI_number: 15926397 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Staphylococcus aureus N315 # 1 627 1 624 625 906 80.0 0 MEAYKIEHLNKSYADKEIFNDLNLSISEHERIGLVGINGTGKSTLLKVIGGLDEDFTADI THPNQYRIRYSSQKQDLNGHMTVFEAVLSSDTPTLRIIKKYEEAVNRYALDQSDSNFNKM MEAQEEMDQKDAWDYNAEIKTILSKLGIHDTTKKIVELSGGQQKRVVLAKTLIEQPDLLL LDEPTNHLDFESIRWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELDRGKLKTYPGNYE DYIVMRAENELIEQKQQEKQKALYKQELAWMRAGAKARTTKQQARINRFNQLESDVKTQH AQDKGELNLAYSRLGKQVYELKNLSKSINNKVLFEGVTEIIQSGRRIGIVGPNGAGKTTL LNILSNEDQDYEGELKIGQTVKVAYFKQTEETLERDIRVIDYLREESEMAKEKDGTSISV TQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHKPNVLLLDEPTNDLDTETLTILE DYIDDFGGSVITVSHDRYFLNKVVQEYWFIHDGKIEKIIGSFEDYESFKKEHERQAMLSK QTEQQNKHKHQPKKKTGLSYKEKLEYETIMTRIEMTETRLEELEQEMINASDNYARIKEL NEEKEQLEATYEADITRWSELEEIKEQ >gi|224999913|gb|ACJC01000087.1| GENE 3 3205 - 4983 1180 592 aa, chain + ## HITS:1 COG:SA0676 KEGG:ns NR:ns ## COG: SA0676 COG0514 # Protein_GI_number: 15926398 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Staphylococcus aureus N315 # 1 592 2 593 593 984 81.0 0 MQETLSHYFGYKSFRPGQEEIITKILNHQHTLGVLPTGGGKSICYQVPGLMQGGTTIVIS PLISLMKDQVDQLQAMGIQAAYLNSSLTHKQQKEIEERIKRGAIQFLYVAPERFENTFFL NLLRKIKIPLIAFDEAHCISKWGHDFRPSYQSVIQKVFTLPQSFTIVALTATATAEVQQD IMSKLSIGQNDVVKTSTKRRNLIFKVNPTYQRQKFVVDYVANHEGQAGIIYCSTRKQVEE LHEALNSEKIKSTIYHAGLTNKERIEAQNDFLYDRVEVVIATNAFGMGIDKSNVRYVIHY NMPGDLESYYQEAGRAGRDGLKSECILLFSERDKGLHEYFITVSQADDDYKDKMGEKLTK MIQYTKTKKCLEATIVHYFEPNENLEECNQCSNCIQENKTYDMTREAKMIISCIARMKQQ ESYSVIIQVLRGEVTDYIKHHHYNELTTHGLMKNYTTSELSHLIDELRFKGYLNENDEIL MCDTSVKQLLNNHTKVYTTPFKQKTKEKVFINTVEGVDRALYRELVDVRKQLSDTLGIAP VSIFSDYTLEEFAKRKPESKQEMIAIDGVGSYKLKHYCPKFIETIQSYKTSI >gi|224999913|gb|ACJC01000087.1| GENE 4 5141 - 5326 76 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIILSVVVLPQPEGPINTKNSPSLILKLTLSTAILLPYRFVTFLNLITFSPSFPLQNSRP F >gi|224999913|gb|ACJC01000087.1| GENE 5 5274 - 6158 720 294 aa, chain + ## HITS:1 COG:SA0677 KEGG:ns NR:ns ## COG: SA0677 COG1125 # Protein_GI_number: 15926399 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 294 31 325 325 423 72.0 1e-118 MLIGPSGCGKTTTLKMINRLIPLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHM TIKENIAQVPQMKKWKDNDINLRVDELLTMVGLNPEQFKNRKPDELSGGQRQRVGVVRAL AADPPVIIMDEPFSALDPISREKLQDDLIDLQTQIKKTIVFVTHDIQEAMKLGDRICLLN EGHVEQIDTPEGFRTRPKSDFVKQFMGSHLDTTHNIVNQVKIKDLGINRPVDDNTNVIHY PEVDAELYLNNIYEDLSHYDAVVVNDKEQHRRYLLNREDVFTYLSLNKEDATHE >gi|224999913|gb|ACJC01000087.1| GENE 6 6151 - 7665 1572 504 aa, chain + ## HITS:1 COG:SA0678_2 KEGG:ns NR:ns ## COG: SA0678_2 COG1732 # Protein_GI_number: 15926400 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Staphylococcus aureus N315 # 235 504 1 270 270 439 82.0 1e-123 MNEFFATLSDRKGQLFSTIIEHIQLSFIALFIATLIAVPLAILLTKTKKLSEIVMNIAAV LQTIPSLALLGLMIPIFGIGRLPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGM KPLRRLTKVELPIAMPVIMAGIRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNSALI LIGAIPAAFLAIIFDFILRYMERLSYKKLLISLGTIVIVIIIAIAIPMAAQKGDKITLAG KLGSEPSIITNMYKILIEEDTDDTVEVKDGMGKTSFLFNALKSDEIDGYLEFTGTVLGEL TKEDLKSKKEKDVYQQAKSSLEKKYHMTMLKPMKYNNTYALAVKRDFAEKHQIKTIGDLR KVEDKLKPGFTLEFNDRPDGYKAVKKTYHLNLSNVKTMEPKLRYTAVKKGDINLIDAYST DAELKQYNMVVLKDDQHVFPPYQGAPLFKEKYLNDHPEVKKPLNKLENRITDEEMQEMNY KVTVKKEDPYKVAREYLEKEKLIK >gi|224999913|gb|ACJC01000087.1| GENE 7 7868 - 8923 1000 351 aa, chain + ## HITS:1 COG:SA0679 KEGG:ns NR:ns ## COG: SA0679 COG0079 # Protein_GI_number: 15926401 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Staphylococcus aureus N315 # 1 351 1 351 352 576 78.0 1e-164 MKKQLDQLTAYTPGLSPESLKKQYGIKGELHKLASNENVYGPSPKVKTAIQSHLDELYYY PESGSPKLREAISQQLNVDASRILFGAGLDEVILMISRAVLSPGDKIITSESTFGQYYHN AIVESADVIQVPLKDGGFDLDGILQQIDNKTSLIWLCNPNNPTGTYFSHDELFNFLKRVP SDIPVLIDEAYVEFVTADDFPDTLKLQEDFDNAFLLRTFSKAYGLAGLRVGYVIASEDAI EKWNIIRPPFNVTRISEYAAIAALEDQEYLKEVTQKNSFERDRFYQIPQSQYFLPSQANF VFVKTSRSQALYDALLNVGCITRLFPNGVRITIGLPEQNDKMIEVLKHFEY >gi|224999913|gb|ACJC01000087.1| GENE 8 9045 - 9584 587 179 aa, chain + ## HITS:1 COG:SA0680 KEGG:ns NR:ns ## COG: SA0680 COG4502 # Protein_GI_number: 15926402 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 179 1 180 180 289 77.0 2e-78 MTRERIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLKHMIPEHEGLVMDILKE PGFFRNLDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDKYEWLLEFFPFLDPQHFVF CGRKNIILADYLIDDNPKQLEIFEGKSIMFTASHNVNEHRFERVSGWRDVKNYFNSIEK >gi|224999913|gb|ACJC01000087.1| GENE 9 9651 - 12260 2611 869 aa, chain - ## HITS:1 COG:SA0143_1 KEGG:ns NR:ns ## COG: SA0143_1 COG1012 # Protein_GI_number: 15925852 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 458 1 458 458 739 82.0 0 MLSVTKKNTYESNKDEVTQMIDSLAEKGQEALKELSKKSQQEINDIVHQMSMAAVDQHMH LAKLAYDETGRGIYEDKAIKNLYASEYIWNSIKDNKTVGIIGEDKQKELTYVAEPIGVIC GVTPTTNPTSTTIFKAMIAIKTGNPIIFAFHPSAQQSSKHAVKVILEAAIKAGAPKDCIQ WIEIPSIEATKQLMNHKDIALVLATGGSGMVKSAYSTGKPALGVGPGNVPTYIEKTAHIK RAVNDIIGSKTFDNGMICASEQVMVVDKEVYSDVVKEFKLHHTYFVNKNELQQLEDAIMN EDKTAVKPDIVGKSAVNIAKLSGISVPEKTKLLVAEIDGIGKDYPLSREKLSPLLAMVTA KSTRHALQICEDTLKFGGLGHTAVIHTEDSQLQQKFGLKMKACRVLVNTPSAVGGIGNMY NELIPSLTLGCGSYGRNSISHNVSAVDLLNIKTIAKRRNNMQWFKLPPKVYFEENSVMYL TEMDNVERAMIVCDPGMVNIGYTDIVEQVLRRRENQPQIKVFNEVEPNPSTHTVYKGLEM FMNFQPDTIIALGGGSAMDAAKAIWMFFEHPETSFFGAKQKFLDIRKRTYKISKPKNAKF ICIPTTSGTGSEVTPFAVITDSETHVKYPLADYALTPDIAIVDPQFVLSVPKDVAADTGM DVLTHAIESYVSVMASDYTRGLSLQAIKLTFDYLKSSVQENDKHSREKMHNASTMAGMAF ANAFLGISHSIAHKIGGEYGIPHGRTNAILLPHVIRYNAKDPQKHTLFPKYDFFRADTDY ADIAKFLGLKGNTTEELVDALANAVYDLGCSIGIDMNLKSQGVTEKLLHSTIDRMAELAF EDQCTTANPKEPLISELKGIIERAYDYER >gi|224999913|gb|ACJC01000087.1| GENE 10 12660 - 13583 793 307 aa, chain - ## HITS:1 COG:SA0681 KEGG:ns NR:ns ## COG: SA0681 COG1597 # Protein_GI_number: 15926403 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Staphylococcus aureus N315 # 1 304 1 304 305 437 71.0 1e-122 MKQPYNHGVLFYHEHSGLKDIHNGIGEVAKSLSSMCKHLSLQLSENKGDIIKYCKAIKNE NYSSDVDVLFILGGDGTLNELVNGVMQYQLDLPIGVIPGGTFNDFTKTLQLHPNFKIASE QLLTSHAESYDVLKVNDLYVLNFVGLGLIVQNAENVQDGSKDIFGKFSYIGSTVKTLLNP VKFDFSLTVDGETKEGNTSMMLIANGPNIGGGQIPLTDLSPQDGRANTFVFNDQTLNILN DILKKRDSMNWNEITQGIDHISGKHITLSTNPSMKVDIDGEINLETPIEIQVLPKAIQLL TATEQNN Prediction of potential genes in microbial genomes Time: Sun May 29 07:35:00 2011 Seq name: gi|224999912|gb|ACJC01000088.1| Staphylococcus epidermidis W23144 contig00128, whole genome shotgun sequence Length of sequence - 47692 bp Number of predicted genes - 42, with homology - 42 Number of transcription units - 19, operones - 8 average op.length - 3.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 40 - 1545 1488 ## COG3104 Dipeptide/tripeptide permease - Prom 1592 - 1651 10.3 - Term 1760 - 1818 7.7 2 2 Op 1 1/0.833 - CDS 1827 - 2327 419 ## COG0780 Enzyme related to GTP cyclohydrolase I 3 2 Op 2 . - CDS 2341 - 3216 812 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 4 3 Op 1 18/0.000 + CDS 3969 - 4367 348 ## COG1780 Protein involved in ribonucleotide reduction 5 3 Op 2 24/0.000 + CDS 4330 - 6435 2151 ## COG0209 Ribonucleotide reductase, alpha subunit + Term 6466 - 6530 -0.9 + Prom 6474 - 6533 6.7 6 3 Op 3 . + CDS 6554 - 7522 1043 ## COG0208 Ribonucleotide reductase, beta subunit 7 3 Op 4 . + CDS 7497 - 7718 98 ## SERP0399 hypothetical protein 8 3 Op 5 11/0.000 + CDS 7782 - 8756 937 ## COG4606 ABC-type enterochelin transport system, permease component 9 3 Op 6 10/0.000 + CDS 8740 - 9699 494 ## COG4605 ABC-type enterochelin transport system, permease component 10 3 Op 7 5/0.000 + CDS 9696 - 10475 242 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 11 3 Op 8 . + CDS 10555 - 11598 975 ## COG4607 ABC-type enterochelin transport system, periplasmic component + Term 11675 - 11733 10.5 12 4 Tu 1 . - CDS 12086 - 13018 1185 ## COG0812 UDP-N-acetylmuramate dehydrogenase - Prom 13049 - 13108 10.0 13 5 Tu 1 . - CDS 13135 - 13662 503 ## SERP0406 hypothetical protein + Prom 13684 - 13743 13.5 14 6 Op 1 . + CDS 13779 - 14669 961 ## SERP0407 putative lipoprotein + Prom 14681 - 14740 7.6 15 6 Op 2 . + CDS 14818 - 15138 356 ## SERP0408 hypothetical protein + Prom 15193 - 15252 9.8 16 7 Tu 1 . + CDS 15409 - 16539 1223 ## COG1929 Glycerate kinase - Term 16491 - 16533 3.6 17 8 Op 1 1/0.833 - CDS 16631 - 17869 1421 ## COG2195 Di- and tripeptidases 18 8 Op 2 12/0.000 - CDS 17890 - 18384 463 ## COG3610 Uncharacterized conserved protein 19 8 Op 3 1/0.833 - CDS 18400 - 19161 800 ## COG2966 Uncharacterized conserved protein - Prom 19200 - 19259 7.2 20 9 Tu 1 . - CDS 19357 - 20427 749 ## COG2199 FOG: GGDEF domain - Prom 20541 - 20600 7.8 + Prom 20579 - 20638 8.2 21 10 Tu 1 . + CDS 20769 - 21848 818 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase + Term 21849 - 21918 13.6 22 11 Tu 1 . - CDS 21908 - 22549 655 ## COG1739 Uncharacterized conserved protein + Prom 22606 - 22665 6.2 23 12 Tu 1 . + CDS 22694 - 23560 827 ## COG1307 Uncharacterized protein conserved in bacteria + Prom 23627 - 23686 5.2 24 13 Op 1 6/0.000 + CDS 23885 - 24967 523 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) 25 13 Op 2 6/0.000 + CDS 24960 - 25634 455 ## COG1040 Predicted amidophosphoribosyltransferases 26 13 Op 3 7/0.000 + CDS 25695 - 26264 836 ## PROTEIN SUPPORTED gi|15923742|ref|NP_371276.1| ribosomal subunit interface protein + Prom 26703 - 26762 8.2 27 13 Op 4 . + CDS 26932 - 29466 2892 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) + Term 29487 - 29540 3.1 + Prom 29566 - 29625 8.6 28 14 Tu 1 . + CDS 29777 - 30778 1077 ## COG1186 Protein chain release factor B + Term 30787 - 30834 6.2 + Prom 30982 - 31041 7.2 29 15 Tu 1 . + CDS 31125 - 31925 922 ## COG3942 Surface antigen + Term 32077 - 32127 13.2 + Prom 32077 - 32136 10.2 30 16 Op 1 2/0.000 + CDS 32234 - 32875 728 ## COG1896 Predicted hydrolases of HD superfamily 31 16 Op 2 3/0.000 + CDS 32881 - 33114 195 ## COG4897 Uncharacterized protein conserved in bacteria + Term 33186 - 33236 -0.4 + Prom 33578 - 33637 7.0 32 16 Op 3 7/0.000 + CDS 33670 - 35655 2215 ## COG0556 Helicase subunit of the DNA excision repair complex 33 16 Op 4 2/0.000 + CDS 35663 - 38497 3258 ## COG0178 Excinuclease ATPase subunit + Term 38541 - 38588 1.0 + Prom 38649 - 38708 6.4 34 16 Op 5 10/0.000 + CDS 38850 - 39782 1030 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism 35 16 Op 6 1/0.833 + CDS 39788 - 40627 846 ## COG0682 Prolipoprotein diacylglyceryltransferase + Prom 40712 - 40771 6.7 36 17 Op 1 3/0.000 + CDS 40798 - 41160 486 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 37 17 Op 2 3/0.000 + CDS 41127 - 42566 1168 ## COG0457 FOG: TPR repeat 38 17 Op 3 1/0.833 + CDS 42631 - 43563 586 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Prom 43646 - 43705 5.4 39 18 Op 1 12/0.000 + CDS 43739 - 44647 759 ## COG1660 Predicted P-loop-containing kinase 40 18 Op 2 12/0.000 + CDS 44647 - 45642 1048 ## COG0391 Uncharacterized conserved protein + Prom 45644 - 45703 4.2 41 18 Op 3 1/0.833 + CDS 45773 - 46717 938 ## COG1481 Uncharacterized protein conserved in bacteria - TRNA 46785 - 46856 49.8 # Arg CCG 0 0 + Prom 46959 - 47018 8.5 42 19 Tu 1 . + CDS 47045 - 47629 836 ## COG0740 Protease subunit of ATP-dependent Clp proteases Predicted protein(s) >gi|224999912|gb|ACJC01000088.1| GENE 1 40 - 1545 1488 501 aa, chain - ## HITS:1 COG:SA0682 KEGG:ns NR:ns ## COG: SA0682 COG3104 # Protein_GI_number: 15926404 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Staphylococcus aureus N315 # 1 501 1 501 501 798 83.0 0 MTSNKSHEQEVQEIPQHGFFGHPKGLGVLFFVEFWERFSYYGMRAMLIFYMYFALQENGL GMDKTTAMSIMSVYGSLIYMSSIPGGWIADRITGTRGATLIGAILIIIGHICLSLPFAMV GLFTSMFFIIVGSGLMKPNISNIVGRLYPENDVRMDAGFVIFYMSVNMGALVSPIILQHY IDIRNFHGGFLIAAIGMALGLVWYLLFNRKTLGSIGMKPTNPLSSSEKKKYGTIIGIVVI AIVLILMIAYFTHTLSFNLISNTVLILGIALPIIYFTTMIRSKEVTDTERSRVKAFIPLF ILGMLFWSIQEQGSNVLNIYGIENSDMKLNLFGWKTHFGEAIFQTINPLFILLFAPVVTL LWQKLGKKQPSLPIKFAIGTILAGASYILMGAIGHIYGDTQFSVNWVILSYVICVIGELC LSPTGSSAAVKLAPKAFNAQMMSLWLLTNASAQAINGTLVKLIKPLGQTNYFIFLGVVAT VITLIILAFIPKISKAMKGIR >gi|224999912|gb|ACJC01000088.1| GENE 2 1827 - 2327 419 166 aa, chain - ## HITS:1 COG:SA0683 KEGG:ns NR:ns ## COG: SA0683 COG0780 # Protein_GI_number: 15926405 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Staphylococcus aureus N315 # 1 166 1 166 166 317 92.0 7e-87 MTQGRQKDELKDITLLGNQNNTYEFDYRPEVLETFDNKHQGRDYFVKFNCPEFTSLCPIT GQPDFATIYISYIPNIKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLINLMDPHYIEV WGKFTPRGGISIDPYTNYGRPNTKYEKIAEHRLMNHDMYPEKIDNR >gi|224999912|gb|ACJC01000088.1| GENE 3 2341 - 3216 812 291 aa, chain - ## HITS:1 COG:SA0684 KEGG:ns NR:ns ## COG: SA0684 COG0697 # Protein_GI_number: 15926406 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Staphylococcus aureus N315 # 3 287 1 285 288 419 85.0 1e-117 MILNPKVKGIIAILISAVGFSFMSVFFRLAGDLPVFQKSLARNFVAMFIPLFFIYKYRQP MFGKLSSQPLLISRSTLGLIGVLLNIYAIDHMVLSDADTLMKLNPFWTIVLSLIFLHEKV RKYQITAMIIAILGMLLIVKPEFSSSVIPSIAGLLSGIFAASAYTCVRALSTREKPYTIV FYFSLFSVVVLIPFSIFTYTPMTTIQILFLLGAGLSAAVGQIGITLAYSFAPAKDISIFT YASIIFTALFGFILFGESPDMLATVGYIVIIGASYYMFDKARRETTLNQNN >gi|224999912|gb|ACJC01000088.1| GENE 4 3969 - 4367 348 132 aa, chain + ## HITS:1 COG:SA0685 KEGG:ns NR:ns ## COG: SA0685 COG1780 # Protein_GI_number: 15926407 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Staphylococcus aureus N315 # 1 132 1 132 132 199 71.0 9e-52 MKVVYYSFSGNVRRFISRAGIKDTFEITQDNCNESVNEPYILVTGTIGFGEVPQPVQSFL NVNHTQLQAVAASGNRNWGQNFAKAGHTISEEYKVPLMMKFEVQGTNKDIIEFKDKVGNF NENHGRKEIQSY >gi|224999912|gb|ACJC01000088.1| GENE 5 4330 - 6435 2151 701 aa, chain + ## HITS:1 COG:SA0686 KEGG:ns NR:ns ## COG: SA0686 COG0209 # Protein_GI_number: 15926408 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Staphylococcus aureus N315 # 1 701 18 718 718 1264 91.0 0 MKTMEEKKYNHIELNNEVTKRKDNGFFNLEKDQEALKVYLEEIHDKMISFDDEIERLHYL VDNNFYFNVFEKYSEAELSEITEYAKSIHFQFASYMSASKFYKDYALKTNDKTKFLEDYN QHVAIVALYLANGNVKQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEIDDSL NSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQ LGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFY MFAPHTVKQEYGVTLDDIDLEKYYDDMVANPNIEKKKKDAREMLNMIAQTQLQSGYPYLM FKDNANKVHANSNIGQIKMSNLCTEIFQLQETSVINDYGTEDEIKRDISCNLGSLNIVNV MESGKFRDSVFTGMDALTVVSDEANIQNAPGVKKANSELHSVGLGVMNLHGYLAKNKIGY ESEEAKDFANIFFMIMNYYSIERSMEIAKERGEKYQDFEQSDYANGKYFEFYTSQEFEPK FEKVRQLFDGIDIPTSNDWKELQNKVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVD QIERRTYGNAETFYPMPFLSPETMWYYKSAFNTDQMKLIDLVATIQTHVDQGISTILYVN SEISTRELSRLYVYAHHKGLKSLYYTRNKLLSVEECTSCAI >gi|224999912|gb|ACJC01000088.1| GENE 6 6554 - 7522 1043 322 aa, chain + ## HITS:1 COG:SA0687 KEGG:ns NR:ns ## COG: SA0687 COG0208 # Protein_GI_number: 15926409 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Staphylococcus aureus N315 # 1 322 1 322 323 572 90.0 1e-163 MKAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLTDSEKNTFKKALAGLTGL DTHQADDGMPLIMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDTWV IEEPHLKYKSDKIVENYHKLWGKEASIYDQYIARVSSVFLETFLFYSGFYYPLYLAGQGK MTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLNELYDNEVSYT HLLYDDIGLADDVLNYVRYNGNKALSNLGFEPYFEEREFNPIIENALDTSTKNHDFFSVK GDGYTLALNVEPLRDEDFVFDN >gi|224999912|gb|ACJC01000088.1| GENE 7 7497 - 7718 98 73 aa, chain + ## HITS:1 COG:no KEGG:SERP0399 NR:ns ## KEGG: SERP0399 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 73 2 74 88 86 90.0 3e-16 MKTLFLIISIVLLKRFLLKLVGISFFMKVGIIKYSDELLLLDKTFIKFLKKYEKLLKKEN RVYNIDVNDNHYH >gi|224999912|gb|ACJC01000088.1| GENE 8 7782 - 8756 937 324 aa, chain + ## HITS:1 COG:SA0688 KEGG:ns NR:ns ## COG: SA0688 COG4606 # Protein_GI_number: 15926410 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Staphylococcus aureus N315 # 1 323 1 323 323 413 78.0 1e-115 MKFIFKGYTLFILLVILTIVSLFIGVSQLSLIDIFHLSDEQMNILYSSRIPRTVSILLSG SSLALSGLIMQQMMQNKFVSPTTAGTMEWAKLGILLSLLFFPNGHILIKLLFAVVLSIVG TFLFVQLINLIRAKDVIFVPLLGIMIGGILSSFTTFVALRTNALQSIGNWLTGNFAVITS GRFEVLYLTIPLLILAFVFANHFTIAGMGKDFSHNLGVSYEKIIKIALFITATLTALVVV TVGTLPFLGLIVPNIISIYRGDHLKNALPHTLMLGAIFVLIADIIGRIIVYPYEINIGLT IGVFGTIIFLILLMKGRKNYANEH >gi|224999912|gb|ACJC01000088.1| GENE 9 8740 - 9699 494 319 aa, chain + ## HITS:1 COG:SA0689 KEGG:ns NR:ns ## COG: SA0689 COG4605 # Protein_GI_number: 15926411 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Staphylococcus aureus N315 # 4 318 3 317 318 324 72.0 1e-88 MQMSTSKKISILVVIAICMSIFYLLVGLDFDIFEYQFQSRFKKFILILLVGAAIGTSVVI FQSITTNRLLTPSIMGLDSVYLFVKVLPIFILGEQATVVTNIYLNFLITLIAMVFFSLLL FQVIFKLGHFSVYFILLVGVILGTFFRSITSFLQLIMNPESFLAVQNVMFASFEASNSKL VTVSGILLVILIIVTIILRPYLDVLLLGRAQAINLGVSYENMTRMFLILVALLVSISTAL IGPVTFLGLLTVNLAHEFMKTYEHKFILPATILFSWISLFIAQWVVENLFEATTEFSLIV DLVGGSYFIYLLVKRRNAN >gi|224999912|gb|ACJC01000088.1| GENE 10 9696 - 10475 242 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 226 1 229 245 97 25 1e-19 MIQIRNLDKTIDNKPILKDISVDIKKGKLTSLIGPNGAGKSTLLSAISRLFSYENGSILI EDKEISEYKTDDLAKKLSILKQSNHTDMNITIEQLVKFGRFPYSKGRMKQEDYDKVEYAL DLLQLNEIKHRNIKTLSGGQRQRAYIAMTIAQDTDYILLDEPLNNLDMKHSVQIMQTLRD LCRQLNKTIIIVLHDINFASCYSDDIIALKQGELVKADDKDNVIQSDILKSLYEMEVRIE EIRGQRICLYYDETTFDSV >gi|224999912|gb|ACJC01000088.1| GENE 11 10555 - 11598 975 347 aa, chain + ## HITS:1 COG:SA0691 KEGG:ns NR:ns ## COG: SA0691 COG4607 # Protein_GI_number: 15926413 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 343 1 342 342 409 69.0 1e-114 MKKTVLFLLLSLVLVLTACNNSSNNNSTSKKNNSDSKETVTIKNSFETSGKENNGSDKKK ISNTVKVPKNPKNAVVLDYGALDVLKELGVADKVKGLPKGENNQSLPNFLDEFKEDKYIN TGNLKEVNFDKVASAKPDVIFISGRTANQKNLDEFKKAAPKAKVVYVGTSDDNLIKDMKR NTENLGKIYDKEDKAKKINKDLDRKISDMKDKTKDFNKKVMYLLVNEGELSTFGPGGRFG DLVFDTLGFKPADKKVSKSPHGQNINNEYINKQNPDVILAMDRGSVVGGKATTNQVLKNK VIKNVKAVKSNHIYELDPKLWYFSSGSSTTTIKQIDELNEVVEKVEK >gi|224999912|gb|ACJC01000088.1| GENE 12 12086 - 13018 1185 310 aa, chain - ## HITS:1 COG:SA0693 KEGG:ns NR:ns ## COG: SA0693 COG0812 # Protein_GI_number: 15926415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Staphylococcus aureus N315 # 5 310 2 306 307 531 83.0 1e-151 MFKTLNKNDILRGLESILPKDIIKVDEPLKRYTYTETGGKADFYLSPTKNEEVQAIVKFA HENSIPVTYLGNGSNIIIREGGIRGIVLSLLSLNHIETSDDAIIAGSGAAIIDVSNVARD HVLTGLEFACGIPGSIGGAVFMNAGAYGGEVKDCIDYALCVNEKGDLLKLTTAELELDYR NSVVQQKHLVVLEAAFTLEPGKLDEIQAKMDDLTERRESKQPLEFPSCGSVFQRPPGHFA GKLIQDSNLQGYRIGGVEVSTKHAGFMVNVDNGTATDYEALIHHVQKTVKEKFDVELNTE VRIIGEHPTD >gi|224999912|gb|ACJC01000088.1| GENE 13 13135 - 13662 503 175 aa, chain - ## HITS:1 COG:no KEGG:SERP0406 NR:ns ## KEGG: SERP0406 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 175 1 175 175 301 97.0 5e-81 MYANVQPFIKKESMKQFTYEYNKVKDVLFTILDSPIKYTQHIGGTCHFNYQTEPILDILV GVNNLHDITSLDEKRLNYAGFYRLHHSYKKKVVMARFNNLSELKQEVRLHIIQMKTPLFK QYQTVNHLLHNDKAIAEWFASKKNEIVQHAKKIREYESQKQNLFEKLYKESNLLS >gi|224999912|gb|ACJC01000088.1| GENE 14 13779 - 14669 961 296 aa, chain + ## HITS:1 COG:no KEGG:SERP0407 NR:ns ## KEGG: SERP0407 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 296 1 296 296 377 98.0 1e-103 MKKLLFIITVIILTIVVSACGNETKRDIKQFESQYKEIHQKQHSVEKVMDKIPLKELDNL SKTDTTDKNKKEFRALQQDINNYLIPEFKKYKNSTQHLTADTNEVKHLKEDYLKTVENKE KSIYDLKEFVDLCNRSIKDNEDILDYTKLFEKNRTEVESDINKAQNKEDASQLKSKLEEN NQQLKDTAKKYLNSSNNDSDSAKEAIKDHISPLIDKQITDINKTNISDNHVDNARKNAIE MYYSLQNYYDTRVDTIKTSEKLAQIDVDRLPKEGKDISEMDKSFKREFKKIKESIN >gi|224999912|gb|ACJC01000088.1| GENE 15 14818 - 15138 356 106 aa, chain + ## HITS:1 COG:no KEGG:SERP0408 NR:ns ## KEGG: SERP0408 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 106 1 106 106 186 100.0 2e-46 MAIKLSSIDQFEQVLEENKYVFVLKHSETCPISANAYDQFNKFLYERDIDGYYLIVQQER KLSDYIAEKTNVKHESPQAFYFVDGEMKWNADHDDINVSQLAQAEE >gi|224999912|gb|ACJC01000088.1| GENE 16 15409 - 16539 1223 376 aa, chain + ## HITS:1 COG:SA0697 KEGG:ns NR:ns ## COG: SA0697 COG1929 # Protein_GI_number: 15926419 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Staphylococcus aureus N315 # 1 372 1 372 374 566 77.0 1e-161 MKVLVAMDEFNEIISSYQANRYVEEAVASQIEDADIVQVPLFNGRHELLDSVFLWQSGNK YRVSAHDADMKETEAIYGQTDSGMTIIEGHLFLNGKKPIQHRSSYGLGEVIKAALDNHTE HLVISLGGIGSFDGGAGMLQALGARFYDDEAQIVDMRKGADLIKYIRRIDLSGVHPQLAK VNIQLMSDFSSRLYGKKSEIMQTYESLDLSQNEAAEIDNLIWYFSELFKNELKIAMGPIE RGGAGGGIAAVLNSLYQAEILTSHELVNQITHLENLIQQADLIIFGEGLKEEDQILETTT IRIAELTQQYNKPAIAICATNDKFDLFESLNVTAMFNTFIDMPDSYTDFKMGIQIRHYTV QALKLLKTQINLPLSY >gi|224999912|gb|ACJC01000088.1| GENE 17 16631 - 17869 1421 412 aa, chain - ## HITS:1 COG:SA0698 KEGG:ns NR:ns ## COG: SA0698 COG2195 # Protein_GI_number: 15926420 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Staphylococcus aureus N315 # 1 408 1 408 408 688 80.0 0 MKKQIIERLTRYVKIDTQSNPDSKTTPSTNKQWDLLNLLEEELQSLGLKTDMDEHGYLFA TLESNINFNVPTVGFLAHVDTSPDFNASHVNPHIIEAYNGQPIKLGESQRILDPDVFPEL NKVVGHTLMVTDGTSLLGADDKAGVVEIMEGIKYLIDHPEIKHGTIRVGFTPDEEIGRGP HQFDVSRFNADFAYTMDGSQLGELQFESFNAAEVTVTCHGVNVHPGSAKNAMVNAISLGQ QFNSLLPSHEVPERTEGYEGFYHLMNFTGNVEKATLQYIIRDHDKEQFELRKKRMMEIRD DINVHYNHFPIKVDVHDQYFNMAEKIKPLKHIIDIPKRVFDALDIVPNTEPIRGGTDGSQ LSFMGLPTPNIFTGCGNFHGPFEYASIDVMEKAVHVVVGIAQEVANSHQSYK >gi|224999912|gb|ACJC01000088.1| GENE 18 17890 - 18384 463 164 aa, chain - ## HITS:1 COG:SA0699 KEGG:ns NR:ns ## COG: SA0699 COG3610 # Protein_GI_number: 15926421 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 164 1 164 164 261 88.0 3e-70 MFIYLFHFIISFIATVLFSIIFNAPKKLLLACGFVGAVAWTIYQMTVGMDLGKVGASFLG SLILGLMSHTMSRRYKQPVIIFIVPGIIPLVPGGAAYEATRFLVSNDYTNAVNTFLEVTL ISGAIAFGILVSEIVYYIYSRIKQYYGKIKGKTYKKSYNMNNRV >gi|224999912|gb|ACJC01000088.1| GENE 19 18400 - 19161 800 253 aa, chain - ## HITS:1 COG:SA0700 KEGG:ns NR:ns ## COG: SA0700 COG2966 # Protein_GI_number: 15926422 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 253 1 253 253 377 88.0 1e-104 MSDSITIIDENKVIDVVLIAGRILLEAGAETYRIEDTMNRIAHSYGLHDTYSFVTSTAII FSLNDRTSTRLIRIRERTTDLEKIALTNSLSRKISSKQLTIDEAKNELLQLKRASLQFSF LTNLIAAFVACGFFLFMFGGVASDAWIACLAGGIAFLTFSFVQKYIQIKFFSEFVASAVV ISIAAIFTKLGIAKNQDIITIASVMPLVPGILITNAIRDLLAGELLAGMSRGVEAALTAF AIGAGVAIVLLLL >gi|224999912|gb|ACJC01000088.1| GENE 20 19357 - 20427 749 356 aa, chain - ## HITS:1 COG:SA0701 KEGG:ns NR:ns ## COG: SA0701 COG2199 # Protein_GI_number: 15926423 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 535 82.0 1e-152 MFEAIIYNISVMVAGIYLFHRLQYSENKRMIFSKEYVTVLMTFVSLLLAAYPIPFQNEYL VHLTFVPLLFLGRYTNMIYTLTAAFIVSLVDVFIFGNSIIYGITLIVIAGIVSAVGPFLK QNDIISLLILNLISIVILLFLALLSPIYELVEILVLIPISFIITIASAITFVDIWHFFSL VNRYENEDKYDYLTGLGNVKEFDRHLNEVSSKAEEKKQSLALLLIDIDGFKDVNDHYSHQ SGDAVLKQMSQLLKNYVPNQFKIFRNGGEEFSVVIRDYTLDQSVKLAENIRSGVEKSSFH LPNKEVIKLSVSIGVGYLTQDDRKSQRKVFKDADDMVHVAKSEGRNKVMFNPIVKL >gi|224999912|gb|ACJC01000088.1| GENE 21 20769 - 21848 818 359 aa, chain + ## HITS:1 COG:SA0702 KEGG:ns NR:ns ## COG: SA0702 COG0472 # Protein_GI_number: 15926424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Staphylococcus aureus N315 # 1 349 1 349 351 481 85.0 1e-136 MYTLLLIAFTMIVSLIITPIIIVISKKLDLVDRPNFRKVHTKPISVMGGTVILFSFLIGI WLGHPIEREVKPLILGAITMYMVGLIDDIYDLRPYLKLAGQIVAALIVTFYGITIDFISL PIGPTIHFGIFSIPITVIWIVAITNAINLIDGLDGLASGVSALALMTIGFIAILQANIFI IMICCVLLGSLLGFLFYNFHPAKIFLGDSGALMIGFIIGFLSLLGFKNITFIALFFPIVI LAVPFIDTLFAMIRRMKKGQHIMQADKSHLHHKLLALGYTHRQTVLLIYSIAIMFSLSSV ILYLSQPLGALMMFILIVFTIELIVEFTGLIDDNYRPILNLITKKGNGKPHHYDEHHRS >gi|224999912|gb|ACJC01000088.1| GENE 22 21908 - 22549 655 213 aa, chain - ## HITS:1 COG:SA0703 KEGG:ns NR:ns ## COG: SA0703 COG1739 # Protein_GI_number: 15926425 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 212 1 212 213 309 77.0 3e-84 MDKSIITIKQAHSIENVISKSRFIAYIKPVSTENEAKAFIDEIKIKHKDATHNCSAYTVG PEMNIQKANDDGEPSGTAGIPMLEILKKLEIHNVCVVVTRYFGGIKLGAGGLIRAYSGAV RDVIYDMGRVELREAIPVTVTLDYDQTGKFEYELASTTFLLREQFYTDKVSYQIDVVKNE YDTFIDFLNRITSGNYDLKQEDIKLLPFDIETN >gi|224999912|gb|ACJC01000088.1| GENE 23 22694 - 23560 827 288 aa, chain + ## HITS:1 COG:SA0704 KEGG:ns NR:ns ## COG: SA0704 COG1307 # Protein_GI_number: 15926426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 285 1 285 288 370 67.0 1e-102 MKIAVMTDSTSYLPQHIIDQYNIPVASLSVTFDDGVNFTESDDFSVDDFYKKMASSKTIP TTSQPAIGDWIENFERLREQGYTDVIVINLSSGISGSYPSATQAGEMVEDIQVHTFDSRL AAMIEGSFAIYAAQLVQKGYKPDDIINELTEIRQHIGAYLIVDDLKNLQKSGRITGAQAW VGTLLKMKPVLHFEEDGKIHPHEKVRTKKRALKSLETNIFKEIEGLEDVTVFVINGDKTE DGKSFLQQLKEDHPNVHIQYCEFGPVIASHLGSGGLGLGYFPRRIDIN >gi|224999912|gb|ACJC01000088.1| GENE 24 23885 - 24967 523 360 aa, chain + ## HITS:1 COG:SA0705 KEGG:ns NR:ns ## COG: SA0705 COG4098 # Protein_GI_number: 15926427 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Staphylococcus aureus N315 # 61 359 1 299 300 387 62.0 1e-107 MDSITDICIVKSFQKATKANYQLPFELSKQQQYASEAIIQAIKNNNDLLLYAVTGAGKTE MMFEGIRIARQMGHNIAIVSPRVDVIIEISHRIKDAFIDERIDVLHQSSRQQYNGHFVIA TIHQLLRFKQHFDTVFVDEVDAFPLSMDPQLSNAIQLASKLNHSHIFMTATPPRHFLKQF PPEKIIKLPARFHRHPLPIPKFKYFKLKSTRKQNLLLNLFRNQINQQRFTLVFFNNIEIM NKTYQQYKMDIADLICVHSEDDLRFEKIEDLRRGQYKIVFTTTILERGFTMTHLDVVVVD AGSFQQEALIQIAGRVGRKQQSPSGLVLFLHEGVTLSMVLAKRNIISMNRLAIKRGWVDA >gi|224999912|gb|ACJC01000088.1| GENE 25 24960 - 25634 455 224 aa, chain + ## HITS:1 COG:SA0706 KEGG:ns NR:ns ## COG: SA0706 COG1040 # Protein_GI_number: 15926428 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 247 55.0 1e-65 MHKCIQCNQTIQETIHIYNLFKPPQIFCERCETLWLNSKIHKDGRCPKCLNNKISTDGEC HDCQFLSKTFYLMEQLFCDYSYDGVMKEIIHQYKIMRDFYLAEVLARRLVLPQTQYDYIV PIPSPIERDIERTFNPVTTVLDKMGISYQDVLGTHIRPKQSKLGKVERSKASNPFYIKDE EINIEGKVILLIDDIYTTGLTIHHAGCKLYDKKVRKFKVFAFAR >gi|224999912|gb|ACJC01000088.1| GENE 26 25695 - 26264 836 189 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15923742|ref|NP_371276.1| ribosomal subunit interface protein [Staphylococcus aureus subsp. aureus Mu50] # 1 189 1 189 190 326 84 1e-88 MIRFEIHGDNLTITDAIRNYIEEKVGKLERYFNNVPNAVAHVRVKTYSNSTTKIEVTIPL KDVTLRAEERHDDLYAGIDLITNKLERQVRKYKTRVNRKHRDRGDQDIFVAEVQESTANN QADDIESENDIEIIRSKQFSLKPMDSEEAVLQMNLLGHDFFIFTDRETDGTSIVYRRKDG KYGLIETTE >gi|224999912|gb|ACJC01000088.1| GENE 27 26932 - 29466 2892 844 aa, chain + ## HITS:1 COG:SA0708 KEGG:ns NR:ns ## COG: SA0708 COG0653 # Protein_GI_number: 15926430 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Staphylococcus aureus N315 # 1 843 1 843 843 1449 90.0 0 MGFLSKIVDGNKKEIKRLGKLADKVLALEEDTAILTDEEIREKTKSFQKELAEIEDVKKQ NDYLDKILPEAYALVREGSKRVFNMIPYKVQVMGGIAIHKGDIAEMRTGEGKTLTATMPT YLNALAGRGVHVITVNEYLSSSQSEEMAELYNYLGLTVGLNLNSKSTEEKREAYAQDITY STNNELGFDYLRDNMVNYAEERVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLY TQANVFAKMLKAEDDYNYDEKTKAVHLTEQGADKAERMFKVDNLYDVQNVEVISHINTAL RAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVAIQNESKTMAS ITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRKDNSDLIYISQKGK FDAVVEDVVEKHKKGQPVLLGTVAVETSEYISNLLKKRGVRHDVLNAKNHEREAEIVSNA GQKGAVTIATNMAGRGTDIKLGDGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDRGD SRFYLSLQDELMVRFGSERLQKMMNRLGMDDSTPIESKMVSRAVESAQKRVEGNNFDARK RILEYDEVLRKQREIIYNERNEIIDSEDSSQVVNAMLRSTLQRAINHFINEEDDNPDYTP FINYVNDVFLQEGDLQDREIKGKDSEDIFEIVWSKIEKAYAQQQETLGDQMSEFERMILL RSIDTHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKYILK SVVQFEDDVEREKSKSFGEAKHVTAEDGKEKAKPQPIVKGDQVGRNDPCPCGSGKKYKNC HGKA >gi|224999912|gb|ACJC01000088.1| GENE 28 29777 - 30778 1077 333 aa, chain + ## HITS:1 COG:SA0709 KEGG:ns NR:ns ## COG: SA0709 COG1186 # Protein_GI_number: 15926431 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Staphylococcus aureus N315 # 2 328 1 327 330 569 87.0 1e-162 MMTDPDFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQEEYDEDMKKEL EEEVQQFEEQIDQYELQLLLDGPHDANNAILELHPGAGGTESQDWAGMLLRMYQRYCEQN GFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFAS CDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNER SQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWGSQIRSYVFHPYSMVKDHR TNEETGKVDAVMDGEIGPFIEAYLRKEMDRQDI >gi|224999912|gb|ACJC01000088.1| GENE 29 31125 - 31925 922 266 aa, chain + ## HITS:1 COG:SA0710_2 KEGG:ns NR:ns ## COG: SA0710_2 COG3942 # Protein_GI_number: 15926432 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 141 266 15 134 134 147 66.0 1e-35 MKKTLTVTLSSIAAFIAINTAANAQESETSQLDSYATSDVITNQSNLGIYTVKPGDSLYK IALEHHLTLEELYALNPGIEPLIFPGDEIVVSETAFEQFNNTNTFVNYETNYIPVGYNNV STDTSNTTYDNYNSESTDTYSVPNAYNGLRSVSNSGNLYTTGQCTYYAFDRRAELGKPIG SLWGNASNWAYSANQAGFNVDHTPEVGAVFQSGSGQNGAGAYGHVGVVESINSNGSVTVS EMNWNGGVNVKSYRTISNPNSYNYIH >gi|224999912|gb|ACJC01000088.1| GENE 30 32234 - 32875 728 213 aa, chain + ## HITS:1 COG:SA0711 KEGG:ns NR:ns ## COG: SA0711 COG1896 # Protein_GI_number: 15926433 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Staphylococcus aureus N315 # 1 211 1 211 216 342 88.0 4e-94 MGMHQYFKRLSDLEKLTRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGNKIDWKSL YEKSLNHDFAEVFTGDIKTPVKYASKELKHLFSQVEEEMVDTFIKEEIPTQYQHVYRERL QEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEPLFFEIYEMSLETIIQFDHLESVKD FIENVIPEMLTENFIPRTELRETTMSILSRRNG >gi|224999912|gb|ACJC01000088.1| GENE 31 32881 - 33114 195 77 aa, chain + ## HITS:1 COG:SA0712 KEGG:ns NR:ns ## COG: SA0712 COG4897 # Protein_GI_number: 15926434 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 76 1 76 78 115 80.0 2e-26 MIWYVCAAFFPCILVVLFSVVTRSKWIGTLVTLIIIGASVYKGFFHNEWIIFIDVTSLLA GYLIIDQLEFHKNQNDS >gi|224999912|gb|ACJC01000088.1| GENE 32 33670 - 35655 2215 661 aa, chain + ## HITS:1 COG:SA0713 KEGG:ns NR:ns ## COG: SA0713 COG0556 # Protein_GI_number: 15926435 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Staphylococcus aureus N315 # 1 661 3 663 663 1148 92.0 0 MVEHVPFKLKSEFEPQGDQPQAIQKIVDGVNEGKRHQTLLGATGTGKTFTMSNVIKEVGK PTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDE IDQLRHSATSSLFERDDVIIIASVSCIYGLGNPEEYKNLVVSVRVGMEMERSELLRKLVD VQYSRNDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEIDRIREVNYLTGEVIRER EHFTIFPASHFVTREEKMKVAIQRIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMR EMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMYNGDRARK QVLIDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYELEHTDEMVEQIIRPTGLL DPKIDVRPTENQIDDLLSEIQDRVDKDERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE IKTLERIEIIRDLRMGTYDAIVGINLLREGIDIPEVSLVVILDADKEGFLRSDRSLIQTI GRAARNDKGEVIMYADKITDSMQYAIDETQRRREIQIAHNKEHGITPKTINKKIHDVISA TVESDETNQQQQTELPKKMTKKERQKTIENIEKEMKKAAKDLDFEKATELRDMLFELKAE G >gi|224999912|gb|ACJC01000088.1| GENE 33 35663 - 38497 3258 944 aa, chain + ## HITS:1 COG:SA0714 KEGG:ns NR:ns ## COG: SA0714 COG0178 # Protein_GI_number: 15926436 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Staphylococcus aureus N315 # 1 942 1 942 948 1686 90.0 0 MKGPSIVVKGARAHNLKGVDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLS AYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKP YCPYHGIEIESQTVQQMVDRILELEERTKIQLLAPVISHRKGSHEKLIEDIGKKGYVRLR VDDEIVDVNEVPQLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELAEGNLTVDVIN GEELKFSENHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLKVDLDLVIPDKNKT LNEGAIEPWEPTSSDFYPTLLKRVCEVYKINMDKPYKKLTDRQKNILMNGSGEKEIEFTF TQRNGGTRKRKMVFEGVVPNIDRRYHESPSEYTREMMSKYMTELPCETCHGKRLSKEALS VYVGDYNIGEVVEYSIKNALYYFENLKLSDQDKSIADQILKEIISRLSFLNNVGLEYLTL ERSSGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNT LIVVEHDDDTMRAADYLVDVGPGAGNHGGEVVSSGTPNKVMKDKKSLTGQYLSGKKRIEV PEYRREITDRKIQIKGAKSNNLKNVNVDFPLSVLTVVTGVSGSGKSSLVNEILYKALAQK INKSKMKPGNFDEIKGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK IRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKG KNIADVLEMTVEEATHFFENIPKIKRKLQTLVDVGLGYITLGQQATTLSGGEAQRVKLAS ELHKRSTGRSIYILDEPTTGLHVDDISRLLKVLNRIVENGDTVVIIEHNLDVIKTADHII DLGPEGGEGGGTIIATGTPEEIAQNKESYTGQYLKPVLERDRVE >gi|224999912|gb|ACJC01000088.1| GENE 34 38850 - 39782 1030 310 aa, chain + ## HITS:1 COG:SA0715 KEGG:ns NR:ns ## COG: SA0715 COG1493 # Protein_GI_number: 15926437 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Staphylococcus aureus N315 # 1 310 1 310 310 522 89.0 1e-148 MLTTDRLVNTLNLELLTGEEGLDRPIKNTDISRPGLEMAGYFSHYASDRIQLLGTTELSF YNLLPDEEKKGRMRKLCRPETPAIIVTRGLEPPEELIRASQETHTPIIVAKDATTSLMSR LTTFLEHELAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIK EITKDELVGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKQIRLNINLENWNKNKLYD RVGLNEETLKILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAVEFNERLNEE IVRNSHKSEE >gi|224999912|gb|ACJC01000088.1| GENE 35 39788 - 40627 846 279 aa, chain + ## HITS:1 COG:SA0716 KEGG:ns NR:ns ## COG: SA0716 COG0682 # Protein_GI_number: 15926438 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Staphylococcus aureus N315 # 1 279 1 279 279 409 77.0 1e-114 MNITLGYIDPVAFSLGPIQVRWYGIIIACGILLGYFIAQAALKQVGLHKDTLIDIIFYSA IVGFIVARIYFVTFQWPYYMNHLSEIPKIWHGGIAIHGGLIGGLITGIIVCKIKNLHPFQ IGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRAFLEHLHLPDFIIRNMYIEGQYYHPTF LYESIWDVIGFVILITLRKRLKLGETFFGYLIWYSVGRFFVEAMRTDSLMLTSHIRVAQL VSVVLIMISVIFVIYRRVKYQPIKYKNSGPLTWPIKKAK >gi|224999912|gb|ACJC01000088.1| GENE 36 40798 - 41160 486 120 aa, chain + ## HITS:1 COG:SA0717 KEGG:ns NR:ns ## COG: SA0717 COG0110 # Protein_GI_number: 15926439 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Staphylococcus aureus N315 # 1 103 56 158 161 144 66.0 4e-35 MDVGNHTSFAYKVLPDLFYPEYISVGKNTVIGYNTTILTHEVLVDEWRVGKVIIGDYTLI GANTTILPGITIGKHVKIGAGTVVSKDVPDYSFAFGNPMQIQLDSGGDNEWHKKKITSFQ >gi|224999912|gb|ACJC01000088.1| GENE 37 41127 - 42566 1168 479 aa, chain + ## HITS:1 COG:SA0718 KEGG:ns NR:ns ## COG: SA0718 COG0457 # Protein_GI_number: 15926440 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Staphylococcus aureus N315 # 1 479 1 479 479 602 68.0 1e-172 MAQKENNIIPMIFDEAFYRKMATQKWQQQNYKKAAEYYEKVLELSPEDFDIQQHYAQCLV KLNISKKAEHLFYENIVKDFHVEESFYELSQLNIELNEPNKAFLFGINYVILSDDKDFRE MLEKTFEVTYTSEQKIELEAQLFSTQLLFQFLFSQGRLEEARAFILNQSYEIQQHRVIRN LLAMCYLYLGEYDSAKAMFEELLKEDNSDVHALCHYTLLLYNKKETEKYQKYLKILNKVV PLNDDETFKLGIVLSYLKQYRASQNLLYPLYKKGKFVSIQLYNALSFNFYYLGNKDESIE MWNKLTQISKVDVGYAPWVIEESKTVFESRVLPLLLDDNNHYRLYGIFLLHQLNGKEILM TEDIWSILESMNDYEKLYLTYLVQGLTLNKLDFIHRGMQRLYNFKQFKYNTSLFTDWINQ AEMIIAENVDLVDVDRYVAAFVYLSYRRSSQPFTKRQLMDDFDVSRYKLNKTIEFILSI >gi|224999912|gb|ACJC01000088.1| GENE 38 42631 - 43563 586 310 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 6 307 2 306 306 230 42 1e-59 MTEVDFDVAIIGAGPAGMTAAVYASRANLKTVMIERGMPGGQMANTEEVENFPGFEMITG PDLSTKMFEHAKKFGAEYQYGDIKSVEDKGDYKVINLGNKEVTAHAVIISTGAEYKKIGV PGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR AQNILQERAFKNDKVDFIWSHTLKTINEKDGKVGSVTLESTKDGAEQTYDADGVFIYIGM KPLTAPFKNLGITNDAGYIVTQDDMSTKVRGIFAAGDVRDKGLRQIVTATGDGSIAAQSA ADYITELKDN >gi|224999912|gb|ACJC01000088.1| GENE 39 43739 - 44647 759 302 aa, chain + ## HITS:1 COG:SA0720 KEGG:ns NR:ns ## COG: SA0720 COG1660 # Protein_GI_number: 15926442 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Staphylococcus aureus N315 # 1 302 1 302 303 514 83.0 1e-146 MASNEKEMGKSELLVVTGMSGAGKSLVIQSLEDMGFFCVDNLPPVLLPKFVELMAQGNPS LQKVAIAIDLRGKELFKSLVKEIDIIKSRNDVILDVMFLEAKTEKIISRYKESRRAHPLN EKGQRSLIDAINEEREHLSEIRSIANYVIDTTKLKPKELKQRISKFYLDENFETFTINVT SFGFKHGIQMDADLVFDVRFLPNPYYVEELRPFTGLDEPVYNYVMKWKETQIFFDKLTDL LKYMIPGYKKEGKSQLVIAIGCTGGQHRSVALAKRLAEYLNEIFEYNVYVHHRDAHIESG ER >gi|224999912|gb|ACJC01000088.1| GENE 40 44647 - 45642 1048 331 aa, chain + ## HITS:1 COG:SA0721 KEGG:ns NR:ns ## COG: SA0721 COG0391 # Protein_GI_number: 15926443 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 331 1 331 331 516 78.0 1e-146 MKQMNVVLIGGGTGLSVLARGLREFPIDITAIVTVADNGGSTGKIRDVMDIPAPGDIRNV IAALSDSESILTQLFQYRFGENQVDGHSLGNLVIAGMTNITNDFGHAIKELSKVLNIKGQ VIPSTNTSVQLNAVMEDGEIVHGETNIPKTHKKINRVFLEPSDVEPMNEAVEALEQADLI VLGPGSLYTSVISNLCVKGISEALLRTSAPKLYVSNVMTQPGETDNYDVKEHIDALSRQV GEPFIDFVICSSESYSKDVLQRYEEKNSKPVAVHKEQLKDSGIRVLTASNLVEISNEHYV RHNTKVLSKMIYELALDLTSTIRFTPSDKKK >gi|224999912|gb|ACJC01000088.1| GENE 41 45773 - 46717 938 314 aa, chain + ## HITS:1 COG:SA0722 KEGG:ns NR:ns ## COG: SA0722 COG1481 # Protein_GI_number: 15926444 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 314 1 314 314 512 91.0 1e-145 MSFASDMKNELTRIEVDESNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSL IKRIFNVEVEILVRKKMKLKKNNIYICRTKMLAKEILNDLGILKEGVFTHDIDPDMIKDD EMKRSYLRGAFLAGGSVNNPETSSYHLEIFSQYEDHSEGLTKLMNSYELNAKHLERKKGS IAYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQ VESIQLIDEEIGLENLPDRLREVAKLRVEHQEISLKELGEMVSTGPISKSGMNHRLRKLN ELADKIRNGEQIEL >gi|224999912|gb|ACJC01000088.1| GENE 42 47045 - 47629 836 194 aa, chain + ## HITS:1 COG:SA0723 KEGG:ns NR:ns ## COG: SA0723 COG0740 # Protein_GI_number: 15926445 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Staphylococcus aureus N315 # 1 193 1 193 195 364 98.0 1e-101 MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDI YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEV MIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQQDTDRDNFLTAAEA KEYGLIDEVMEPEK Prediction of potential genes in microbial genomes Time: Sun May 29 07:35:18 2011 Seq name: gi|224999911|gb|ACJC01000089.1| Staphylococcus epidermidis W23144 contig00129, whole genome shotgun sequence Length of sequence - 16266 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 7, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 169 - 360 197 ## SERP0437 hypothetical protein 2 1 Op 2 . - CDS 391 - 1290 1123 ## COG1090 Predicted nucleoside-diphosphate sugar epimerase - Prom 1401 - 1460 10.3 + Prom 2045 - 2104 7.7 3 2 Tu 1 . + CDS 2157 - 2777 806 ## SERP0439 hypothetical protein + Term 2902 - 2952 12.5 - Term 2891 - 2939 10.5 4 3 Tu 1 . - CDS 2950 - 3186 304 ## SERP0440 hypothetical protein - Prom 3259 - 3318 9.2 + Prom 3320 - 3379 8.7 5 4 Op 1 5/0.000 + CDS 3540 - 4553 1084 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain 6 4 Op 2 26/0.000 + CDS 4606 - 5616 1465 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 5736 - 5784 6.6 + Prom 5666 - 5725 6.9 7 5 Op 1 13/0.000 + CDS 5811 - 7001 1728 ## COG0126 3-phosphoglycerate kinase + Prom 7041 - 7100 2.2 8 5 Op 2 8/0.000 + CDS 7132 - 7893 1077 ## COG0149 Triosephosphate isomerase 9 5 Op 3 5/0.000 + CDS 7896 - 9413 2012 ## COG0696 Phosphoglyceromutase + Prom 9466 - 9525 9.5 10 5 Op 4 . + CDS 9552 - 10856 1884 ## COG0148 Enolase + Term 10913 - 10955 7.2 + Prom 10937 - 10996 10.3 11 6 Op 1 . + CDS 11022 - 11480 463 ## SERP0447 hypothetical protein 12 6 Op 2 4/0.000 + CDS 11549 - 11782 361 ## COG1314 Preprotein translocase subunit SecG + Term 11840 - 11880 1.3 + Prom 11871 - 11930 10.1 13 7 Op 1 4/0.000 + CDS 12082 - 12822 1047 ## COG1647 Esterase/lipase 14 7 Op 2 10/0.000 + CDS 12857 - 15235 1700 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 15 7 Op 3 . + CDS 15260 - 15730 499 ## COG0691 tmRNA-binding protein + Term 15798 - 15835 0.1 Predicted protein(s) >gi|224999911|gb|ACJC01000089.1| GENE 1 169 - 360 197 63 aa, chain - ## HITS:1 COG:no KEGG:SERP0437 NR:ns ## KEGG: SERP0437 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 63 1 63 63 63 96.0 2e-09 MKDTQLTYILLIIASVLLIANGIFAFERTLSMILMSILFILVGIILLSTTLNTMYQTSKH SKR >gi|224999911|gb|ACJC01000089.1| GENE 2 391 - 1290 1123 299 aa, chain - ## HITS:1 COG:SA0724 KEGG:ns NR:ns ## COG: SA0724 COG1090 # Protein_GI_number: 15926446 # Func_class: R General function prediction only # Function: Predicted nucleoside-diphosphate sugar epimerase # Organism: Staphylococcus aureus N315 # 1 298 1 299 300 488 75.0 1e-138 MKRYLITGGTGMVGSHLVNEIKQTDAHITILTRQDKTSNHPKITYINWSKEDWQHQVPDI DIVINLAGATLNKRWTSSHKQAMMLSRIQSTQTLFELFETREHKPEVLFNASAMGYYPPD LFTSYTELYQTLPFDFLSEIVYQWERFANKFKQFGTRVVLGRFGLILSDDGGALEMMKLP YRLYVGGKLGSGRQWYSWIHIDDLIRGILFTINHDNAEGPFNLTAPIPERQNLFGYTLAR AMHKPHETWAPKLILRTVLGQMSTVILDTQKVLPNKLHALGFEFKYNNLRNALDDLIKA >gi|224999911|gb|ACJC01000089.1| GENE 3 2157 - 2777 806 206 aa, chain + ## HITS:1 COG:no KEGG:SERP0439 NR:ns ## KEGG: SERP0439 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 206 1 206 206 116 94.0 4e-25 MSGISKFISAIVVLLLLIGLAFGIYSFVDSSKKGNERLSNQTTQQEKKKDDKDKKEKKDK KSEEEKKDNTQQTQQVPQTQQTQQTQQTVQTPQRPTTQTPVKQNPQTGEKRAKEPKTDER KKSRQDSSNSKESPSQKDQSPTQQKPQQNKSNQSSANRQSTQNKSNQTQPTRPQNNGNSG NQNASSGQNTQKQNNNNQNSQSSKKD >gi|224999911|gb|ACJC01000089.1| GENE 4 2950 - 3186 304 78 aa, chain - ## HITS:1 COG:no KEGG:SERP0440 NR:ns ## KEGG: SERP0440 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 78 1 78 78 100 97.0 2e-20 MSNHNYSDEKIEVIDPSDDRYKGDDYFNKNSSQNNQNLKTFNQTYSYSCTHSGCGCMLGC LTISLISFLLSLLIFWII >gi|224999911|gb|ACJC01000089.1| GENE 5 3540 - 4553 1084 337 aa, chain + ## HITS:1 COG:SA0726 KEGG:ns NR:ns ## COG: SA0726 COG2390 # Protein_GI_number: 15926448 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Staphylococcus aureus N315 # 1 337 1 337 337 551 80.0 1e-157 MKDLIKVQQKLIPDLIDKMYRRFYILSTISQNQPVGRRSLSEHMDMTERVLRSETDMLKK QELIRVKPTGMEITNEGTEVLAQLGEYFNVYSDDHKLARAIKDKFHIKDVHVIPGDSDSN RTVKREMGQQAGQLLEGILYEDAIVSVTGGSTMACVSESIHLLPFNVFFVPARGGLGENV VYQANTIASSMAQQAGGYYTTLYVPDNVSESTYDTLMLEPSVMHTLDKIKQANITIHGIG DALKMAHRRQSSQDVIDNLQHHQAVGEAFGYYFDAQGQIVHKVKTIGLQLEDLENKEFIF AVAGGQSKGEAIKAYLSIAPENTVLITDEAAAKVILQ >gi|224999911|gb|ACJC01000089.1| GENE 6 4606 - 5616 1465 336 aa, chain + ## HITS:1 COG:SA0727 KEGG:ns NR:ns ## COG: SA0727 COG0057 # Protein_GI_number: 15926449 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 336 1 336 336 596 92.0 1e-170 MAIKVAINGFGRIGRLAFRRIQDVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEV IEGGFRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLIS APAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAY TGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG SLTELTVVLDKQDVTVDQVNSAMKQASDESFGYTEDEIVSSDIVGMTYGSLFDATQTRVM TVGDRQLVKVAAWYDNEMSYTAQLVRTLAHLAELSK >gi|224999911|gb|ACJC01000089.1| GENE 7 5811 - 7001 1728 396 aa, chain + ## HITS:1 COG:SA0728 KEGG:ns NR:ns ## COG: SA0728 COG0126 # Protein_GI_number: 15926450 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Staphylococcus aureus N315 # 1 396 1 396 396 653 87.0 0 MAKKIVSDLDLKGKVVLERADFNVPIKDGEITNDNRIVQALPTIKYIIEQGGKLVLFSHL GKVKEESDKEGLSLKPVAENLSKQLGKEVIFVPETRGEKLETAIENLNEGDVLLVENTRF EDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGYLMEKEI KFIGGVVNDPQKPVVAILGGAKVSDKINVIKNLVNIADKILIGGGMAYTFIKAQGKEIGL SLLEEDKIDFAKDLLENNGDQIVLPVDCKIAKEFSNDAKITEVSINEIPSDQEAMDIGPK TVELFNKELQGAHTVVWNGPMGVFEFSNFAKGTIGVCESIAKLEDATTIIGGGDSAAAAI SLGFEDDFTHISTGGGASLEYLEGKELPGIKAINDK >gi|224999911|gb|ACJC01000089.1| GENE 8 7132 - 7893 1077 253 aa, chain + ## HITS:1 COG:SA0729 KEGG:ns NR:ns ## COG: SA0729 COG0149 # Protein_GI_number: 15926451 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Staphylococcus aureus N315 # 1 253 1 253 253 427 87.0 1e-120 MRTPIIAGNWKMNKTVQEAKDFVNELPTLPNPKEVESVICAPTIQLDALVTAVKDGKAKG LKIGAQNAYFEESGAYTGETSPVALSELGVKYVVIGHSERRDYFHETDEEVNKKAHAIFN HGMTPIICVGESDEEREAGKANEIVGNQVKKAVEGLSDDQLKEVVIAYEPIWAIGTGKSS TSEDANEMCAHVRQTLADLSSQEVADATRIQYGGSVKPNNIKEYMAQSDIDGALVGGASL KVEDFVQLLEGAK >gi|224999911|gb|ACJC01000089.1| GENE 9 7896 - 9413 2012 505 aa, chain + ## HITS:1 COG:SA0730 KEGG:ns NR:ns ## COG: SA0730 COG0696 # Protein_GI_number: 15926452 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Staphylococcus aureus N315 # 1 505 1 505 505 896 88.0 0 MAKQPTALIILDGFANRESEHGNAVKQAHKPNFDRYYEKYPTTQIEASGLDVGLPEGQMG NSEVGHMNIGAGRIVYQSLTRINKSIEDGEFFDNTVLNNAVKHVKDNDSALHVFGLLSDG GVHSHYKHLFAILELAKKQGIDKVYVHAFLDGRDVDQKSALKYIEETEDKFKELGVGQFA SVSGRYYAMDRDKRWDREERAYNAIRNFEGPTFTSAKAGVEANYKNDVTDEFVEPFIVEG QNDGVNDGDAVIFYNFRPDRAAQLSEIFTNKAFDGFKVEQVDNLFYATFTKYNDNVDAEI VFEKVDLNNTIGEVAQDNGLKQLRIAETEKYPHVTYFMSGGRNEEFEGERRRLIDSPKVA TYDLKPEMSAYEVKDALLEELDKGDLDLILLNFANPDMVGHSGMLEPTIKAIEAVDECLG EVVDKIIDMGGHAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKDGVTLRETGRLGD LAPTLLDLLNVKQPSEMTGESLIKH >gi|224999911|gb|ACJC01000089.1| GENE 10 9552 - 10856 1884 434 aa, chain + ## HITS:1 COG:SA0731 KEGG:ns NR:ns ## COG: SA0731 COG0148 # Protein_GI_number: 15926453 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Staphylococcus aureus N315 # 1 434 1 434 434 792 94.0 0 MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYL GKGVTKAVENVNEMIAPEIVEGEFSVLDQVSIDKMMIQLDGTHNKGKLGANAILGVSIAV ARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPVGAESFKES LRWGAEIFHNLKSILSERGLETAVGDEGGFAPRFEGTEDAVETIIKAIEKAGYKPGEDVF LGFDCASSEFYENGVYDYTKFEGEHGAKRSAAEQVDYLEELIGKYPIITIEDGMDENDWE GWKQLTDCIGDKVQLVGDDLFVTNTEILSKGIEQGIGNSILIKVNQIGTLTETFDAIEMA QKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELYET AKFEGIKSFYNLDK >gi|224999911|gb|ACJC01000089.1| GENE 11 11022 - 11480 463 152 aa, chain + ## HITS:1 COG:no KEGG:SERP0447 NR:ns ## KEGG: SERP0447 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 152 1 152 152 247 98.0 1e-64 MTDSNAKEIRTGRLIAISSLVFCILLILHHFIVLDESTAKSILSLAGQKTSDTAVKNILN SDRYTGIMYILAYLAGTVAFWNRHPYLWWFMFAVYISNALFTLVNLYLFIQGILDVKNVL AVLPILIVVIGSIILAIYMLVVSIKRKSTFNR >gi|224999911|gb|ACJC01000089.1| GENE 12 11549 - 11782 361 77 aa, chain + ## HITS:1 COG:SA0733 KEGG:ns NR:ns ## COG: SA0733 COG1314 # Protein_GI_number: 15926455 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 104 90.0 4e-23 MHTLIIVLLIIDCIALVTVVLLQEGKSNGLSGAISGGAEQLFGKQKQRGVDLFLHRLTII LAILFFVLMFCISYLGM >gi|224999911|gb|ACJC01000089.1| GENE 13 12082 - 12822 1047 246 aa, chain + ## HITS:1 COG:SA0734 KEGG:ns NR:ns ## COG: SA0734 COG1647 # Protein_GI_number: 15926456 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 246 1 246 246 421 84.0 1e-118 MQIKLPKPFFFEEGKRAVLLLHGFTGNSADVRQLGRYLQKKGYTSYAPQYEGHAAPPEEI LKSSPFVWFKDVLDGYDYLVDQGYEEIAVAGLSLGGAFALKLSLNRDVKGIITMCAPMEN KTEGSIYEGFLEYGRNFKKYEGKDQQTIDQEMEQFHPTETLKELSDTLNGVKEHVDEVID PILVVQAEQDTMIDPQSANYIYNHVDSDEKEIKWYQHSGHVITIDKEKEKVFEDVYQFLE SLEWTE >gi|224999911|gb|ACJC01000089.1| GENE 14 12857 - 15235 1700 792 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 1 711 1 702 730 659 46 0.0 MNLKQSIEEMIKQPDYEPMSVSDFQDALGLNSADSFRDLIKILVELEQSGLIERTRTDRY QRKQSNKTNSKLIKGTLSQNKKGFAFLRPEDDEMDDIFIPPTKINRALDGDTVIVEIQKS RGEHKGKIEGEVKSIEKHSVTQVVGTYSEAKHFGFVLPDDKRIMQDIFIPKGQNLGAIDG HKVLVQITKYADSTDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDAVLQEAEEVP DVIEPSEIEGRRDLRDELTITIDGADAKDLDDAIAVKKLKNGNTELTVSIADVSYYVKEG SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPEEDRLTLSCRMEINERGEVVKHE IFDSVIHSNYRMTYDAVNKIITDQDSEIRSQYKDLTPMLDLAQDLSNRLIRMRKRRGEID FDINEAKVLVNDEGIPTEVLMRERGEGERLIESFMLAANETVAEHFNKLEVPFIYRVHEQ PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQSIQEEVEGRPEQMVISTMMLRSMQQAH YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIENSMDKKEIRHWEETLPELA EHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIISSVANFGMFIELPNTIEGMVHI ANMTDDYYHFDERQMALIGERQAKVFRIGDAVKVKVTHVDVEERMIDFQIVGMPLPKKTS SQRPAREKTIQAKTRGKSLDHTKSDRNGKGKKKKRKQRKGKNARKKDKQGNTHHKPFYKD KSVKKKSRRKKK >gi|224999911|gb|ACJC01000089.1| GENE 15 15260 - 15730 499 156 aa, chain + ## HITS:1 COG:SA0736 KEGG:ns NR:ns ## COG: SA0736 COG0691 # Protein_GI_number: 15926458 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Staphylococcus aureus N315 # 5 156 3 154 154 238 89.0 3e-63 MAKKKSKSPGTLAENRKARHDYNIEDTIEAGIALRGTEIKSIRRGSANLKDSFAQVRRGE MYLNNMHIAPYEEGNRFNHDPLRTRKLLLHKKEIQKLGERTREIGYSIIPLKLYLKHGQC KVLLGVARGKKKYDKRQALKEKAVKRDIDRAVKARY Prediction of potential genes in microbial genomes Time: Sun May 29 07:35:30 2011 Seq name: gi|224999910|gb|ACJC01000090.1| Staphylococcus epidermidis W23144 contig00130, whole genome shotgun sequence Length of sequence - 5952 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 6, operones - 2 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 550 - 609 8.2 1 1 Op 1 . + CDS 713 - 979 317 ## USA300HOU_1797 hypothetical protein 2 1 Op 2 . + CDS 1025 - 1186 78 ## COG3728 Phage terminase, small subunit + Term 1301 - 1347 10.1 - Term 1289 - 1334 6.1 3 2 Tu 1 . - CDS 1345 - 1782 376 ## SAR1890 hypothetical protein - Prom 1815 - 1874 9.8 4 3 Op 1 . + CDS 2013 - 3335 1132 ## SAR1895 hypothetical protein 5 3 Op 2 . + CDS 3347 - 3646 456 ## gi|242242159|ref|ZP_04796604.1| conserved hypothetical protein + Term 3655 - 3694 7.5 - Term 3642 - 3682 0.1 6 4 Tu 1 . - CDS 3865 - 4299 332 ## SAR1890 hypothetical protein - Prom 4361 - 4420 3.5 + Prom 4227 - 4286 7.7 7 5 Tu 1 . + CDS 4341 - 4511 217 ## gi|242242161|ref|ZP_04796606.1| hypothetical protein HMPREF0791_0687 + Term 4632 - 4683 7.4 + Prom 4944 - 5003 11.8 8 6 Tu 1 . + CDS 5030 - 5650 698 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 5723 - 5754 -0.6 Predicted protein(s) >gi|224999910|gb|ACJC01000090.1| GENE 1 713 - 979 317 88 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_1797 NR:ns ## KEGG: USA300HOU_1797 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 79 75 153 157 65 53.0 7e-10 MKYNVKNYKEIKFEEHKENPLDGFVITVYINNDNTNTFSAHMWSKDDYQFEYLSTYSGYI AKNMPENPKSVSEIKKEQSNKEDKKKDD >gi|224999910|gb|ACJC01000090.1| GENE 2 1025 - 1186 78 53 aa, chain + ## HITS:1 COG:SA1820 KEGG:ns NR:ns ## COG: SA1820 COG3728 # Protein_GI_number: 15927588 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Staphylococcus aureus N315 # 1 53 104 156 189 91 84.0 4e-19 MNLVYNEHVETVDVPIKPSDRLKARDMLGKYHKLFTDKQEILGDVPIFINIGE >gi|224999910|gb|ACJC01000090.1| GENE 3 1345 - 1782 376 145 aa, chain - ## HITS:1 COG:no KEGG:SAR1890 NR:ns ## KEGG: SAR1890 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 23 143 22 142 148 130 57.0 2e-29 MKAKIIILIFIIILILTFIGLGGYTLNKNKKETYITTQEKRIDLYFKHNLKNYQTMKINN FKKSPMKGYFIDGYINDDKTLEFEAYISSADNHQFTGDVGYDTDGVGKLFKEKNAKDKLT PNDIIKKENLNKKDYKADPPLIWGF >gi|224999910|gb|ACJC01000090.1| GENE 4 2013 - 3335 1132 440 aa, chain + ## HITS:1 COG:no KEGG:SAR1895 NR:ns ## KEGG: SAR1895 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 440 65 536 536 341 45.0 3e-92 MGYAGTELTSMKDWKTNANLPFHNNTTNLKIDERYKDLKNTTITEKYNKPTDDNDVLNTM DTIGETIIKKVTHSNVPNDIYTKGTPSQIDESVAFTQAVKDKYPNSKFHSGAHSLGGYLA QYNAVKFNFDSTTTYAAPNPYGAFSGDIKKQIDEGKYNGKIKNVGHEDDIVNSLDFFKPR IGSNIITAPKYDGFLTSLPFVGQHFIGTYDSFDKKGNAKEMSKGELAAYKKAKKMFNQFN IFTTDKDLTGLDDTISAFIKKLNKKAKADKASKAKKGSKSTSKSSKSVKGDSDASAKKGH GGSGGSGKKIKIQPEAVRAIVSNLRDRIHKYDDVLRTIEEYERETKKSSQRILDKYESEL LSGSHKFISPNDLAEYMEALAQGGSVGNLEFYDNHLMEQVTQDIHQNKKALLQFAEKLEY AADKFEEKDLEESDVFGLFS >gi|224999910|gb|ACJC01000090.1| GENE 5 3347 - 3646 456 99 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242159|ref|ZP_04796604.1| ## NR: gi|242242159|ref|ZP_04796604.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 99 1 99 99 121 100.0 1e-26 MSSKDAEKKQRELARLEQLKQAMRSETESMVEQAKSDVETRKNDIQQIIEVINSAGQELD EVFEGEASEAAQTNVTKLKSKNIDMNTDFEFLVHSFEVY >gi|224999910|gb|ACJC01000090.1| GENE 6 3865 - 4299 332 144 aa, chain - ## HITS:1 COG:no KEGG:SAR1890 NR:ns ## KEGG: SAR1890 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 22 142 22 142 148 118 52.0 6e-26 MKKRKITFYTILLSVLLILIGGYVLHKNEKDRYIEVQKNRIDLYFKYNLKNYHSLTIKDV DKNPMGDYFISGYINNDKKYEFEAMMSSIDRFQFNGDMSYNPKVFGKLFKNEDHINELTP NDIIKKENLNKKDYEADPPLIWGF >gi|224999910|gb|ACJC01000090.1| GENE 7 4341 - 4511 217 56 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242161|ref|ZP_04796606.1| ## NR: gi|242242161|ref|ZP_04796606.1| hypothetical protein HMPREF0791_0687 [Staphylococcus epidermidis W23144] # 1 56 22 77 77 93 100.0 4e-18 MQQTDEISHKIASESYRDLEKNNNIKVQGKNYRVIEKRDDTQNGKIYLISNFVYKI >gi|224999910|gb|ACJC01000090.1| GENE 8 5030 - 5650 698 206 aa, chain + ## HITS:1 COG:L1734467 KEGG:ns NR:ns ## COG: L1734467 COG0110 # Protein_GI_number: 15673662 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Lactococcus lactis # 6 194 5 193 203 199 50.0 2e-51 MNKDYEYESMLKGDLYIAENIAKENKSMNGKVIAQKINKTSIDDEEKIKDLEVELFGETP DDFYVTPPLYVDYGRHVNIGENFYANMDCMFLDVNYINIGNNVMFGPRVNLYTAGHPIDP LIRNEQLEYGAPINIKDNVWIGGNVTVLPGITIGKNAVVAAGSVVTKDVPEDSIVGGNPA KHIRDIDSKDYEKWNELKYKYKESKQ Prediction of potential genes in microbial genomes Time: Sun May 29 07:36:01 2011 Seq name: gi|224999909|gb|ACJC01000091.1| Staphylococcus epidermidis W23144 contig00131, whole genome shotgun sequence Length of sequence - 33866 bp Number of predicted genes - 45, with homology - 44 Number of transcription units - 31, operones - 9 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 147 - 503 347 ## SAR1894 hypothetical protein - Prom 528 - 587 7.1 + Prom 420 - 479 6.4 2 2 Tu 1 . + CDS 621 - 878 378 ## SAR1895 hypothetical protein + Term 899 - 958 -0.5 + Prom 882 - 941 5.9 3 3 Op 1 . + CDS 1030 - 1287 341 ## SAAV_0809 hypothetical protein 4 3 Op 2 . + CDS 1277 - 1684 335 ## SLGD_01833 hypothetical protein 5 4 Tu 1 . - CDS 2198 - 2431 365 ## SERP0457 hypothetical protein - Prom 2604 - 2663 11.2 - Term 2871 - 2921 6.1 6 5 Tu 1 . - CDS 3044 - 4351 937 ## COG0168 Trk-type K+ transport systems, membrane components + Prom 4472 - 4531 6.0 7 6 Tu 1 . + CDS 4576 - 4920 251 ## SERP0460 hypothetical protein + Term 5096 - 5137 -0.2 - Term 5079 - 5129 12.6 8 7 Tu 1 . - CDS 5139 - 5555 515 ## SE0574 hypothetical protein 9 8 Tu 1 . - CDS 5966 - 6160 154 ## SE0575 hypothetical protein - Prom 6188 - 6247 6.2 10 9 Tu 1 . - CDS 7040 - 7543 423 ## COG3477 Predicted periplasmic/secreted protein - Prom 7668 - 7727 7.8 + Prom 7567 - 7626 8.8 11 10 Tu 1 . + CDS 7829 - 8770 640 ## COG1230 Co/Zn/Cd efflux system component + Term 8930 - 8987 -0.9 + Prom 10022 - 10081 7.7 12 11 Tu 1 . + CDS 10139 - 10339 324 ## COG1278 Cold shock proteins + Term 10360 - 10399 5.1 - Term 10806 - 10842 -0.1 13 12 Op 1 . - CDS 10960 - 11184 277 ## SERP0467 hypothetical protein 14 12 Op 2 . - CDS 11209 - 11493 351 ## SERP0468 hypothetical protein - Prom 11531 - 11590 6.5 15 12 Op 3 . - CDS 11592 - 12338 745 ## COG4195 Phage-related replication protein - Prom 12407 - 12466 9.8 + Prom 12344 - 12403 9.7 16 13 Tu 1 . + CDS 12552 - 12785 191 ## SERP0470 flagellar hook-length control protein-related protein + Term 12956 - 13010 2.2 17 14 Tu 1 . - CDS 12844 - 13398 431 ## SERP0471 hypothetical protein - Prom 13455 - 13514 6.3 - Term 13487 - 13538 10.4 18 15 Op 1 . - CDS 13588 - 13776 272 ## SERP0472 hypothetical protein 19 15 Op 2 . - CDS 13801 - 14058 124 ## gi|242242185|ref|ZP_04796630.1| conserved hypothetical protein - Prom 14105 - 14164 10.2 20 16 Tu 1 . + CDS 14459 - 14662 273 ## SERP0474 hypothetical protein - Term 14550 - 14594 1.9 21 17 Tu 1 . - CDS 14654 - 14890 317 ## SERP0475 hypothetical protein - Prom 15078 - 15137 6.8 + Prom 15010 - 15069 9.4 22 18 Tu 1 . + CDS 15125 - 15691 670 ## COG0406 Fructose-2,6-bisphosphatase + Term 15759 - 15807 -0.5 - Term 15747 - 15795 -0.5 23 19 Op 1 . - CDS 15962 - 16462 441 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 24 19 Op 2 . - CDS 16413 - 16586 104 ## - Prom 16673 - 16732 9.1 - Term 16799 - 16842 10.2 25 20 Tu 1 . - CDS 16868 - 17290 600 ## COG1764 Predicted redox protein, regulator of disulfide bond formation - Prom 17310 - 17369 5.3 + Prom 17365 - 17424 6.2 26 21 Op 1 1/0.667 + CDS 17451 - 18167 518 ## COG0710 3-dehydroquinate dehydratase + Prom 18169 - 18228 6.5 27 21 Op 2 . + CDS 18248 - 18790 465 ## COG0778 Nitroreductase + Term 18911 - 18974 11.4 - Term 18904 - 18957 6.4 28 22 Tu 1 . - CDS 18966 - 19289 456 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 19317 - 19376 9.1 + Prom 19206 - 19265 5.0 29 23 Op 1 4/0.000 + CDS 19433 - 19786 245 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Prom 19872 - 19931 9.0 30 23 Op 2 . + CDS 19960 - 20340 522 ## COG0509 Glycine cleavage system H protein (lipoate-binding) + Term 20351 - 20389 2.1 + Prom 20661 - 20720 2.2 31 24 Op 1 2/0.167 + CDS 20746 - 21177 498 ## COG1658 Small primase-like proteins (Toprim domain) 32 24 Op 2 1/0.667 + CDS 21170 - 21466 245 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 21636 - 21697 12.7 + Prom 21473 - 21532 3.9 33 25 Op 1 32/0.000 + CDS 21720 - 22745 840 ## COG1135 ABC-type metal ion transport system, ATPase component 34 25 Op 2 22/0.000 + CDS 22738 - 23433 822 ## COG2011 ABC-type metal ion transport system, permease component 35 25 Op 3 . + CDS 23454 - 24266 1138 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 24307 - 24377 17.5 - Term 24306 - 24351 5.4 36 26 Tu 1 . - CDS 24535 - 24693 180 ## SE0603 hypothetical protein - Prom 24713 - 24772 7.7 + Prom 24666 - 24725 9.1 37 27 Tu 1 . + CDS 24868 - 25059 429 ## SERP0494 hypothetical protein + Term 25079 - 25121 9.0 38 28 Tu 1 . - CDS 25124 - 25984 828 ## COG2035 Predicted membrane protein + Prom 26220 - 26279 9.6 39 29 Op 1 41/0.000 + CDS 26306 - 27067 182 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 27081 - 27140 3.2 40 29 Op 2 24/0.000 + CDS 27162 - 28469 1597 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component 41 29 Op 3 19/0.000 + CDS 28537 - 29778 1453 ## COG0520 Selenocysteine lyase 42 29 Op 4 6/0.000 + CDS 29768 - 30232 622 ## COG0822 NifU homolog involved in Fe-S cluster formation + Prom 30322 - 30381 6.0 43 29 Op 5 . + CDS 30438 - 31835 1547 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component + Term 31862 - 31905 6.3 + Prom 32610 - 32669 2.0 44 30 Tu 1 . + CDS 32689 - 32994 112 ## gi|242242210|ref|ZP_04796655.1| hypothetical protein HMPREF0791_0736 + Prom 33172 - 33231 10.0 45 31 Tu 1 . + CDS 33380 - 33866 499 ## COG4536 Putative Mg2+ and Co2+ transporter CorB Predicted protein(s) >gi|224999909|gb|ACJC01000091.1| GENE 1 147 - 503 347 118 aa, chain - ## HITS:1 COG:no KEGG:SAR1894 NR:ns ## KEGG: SAR1894 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 2 116 27 143 149 92 46.0 3e-18 MHKNKREQYLHIQKKRIDLFFKENMNNYQNLDLTKTGKTPMGSYIIEVYINNDKSLYFSA TLNKADNYQFEDTIGYSKKVGAMYKPPRSHKKFPSQIIKEKNLNENDYKADPPLIWGF >gi|224999909|gb|ACJC01000091.1| GENE 2 621 - 878 378 85 aa, chain + ## HITS:1 COG:no KEGG:SAR1895 NR:ns ## KEGG: SAR1895 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 75 1 75 536 72 45.0 4e-12 MRITDKTSFDIANESYKKYDIGDEITVSGNDFEIIEKRDDTQNGLRSYAFAPVVNGKPDT NNIVMGYAGTGPLSMKIVCYFTSKE >gi|224999909|gb|ACJC01000091.1| GENE 3 1030 - 1287 341 85 aa, chain + ## HITS:1 COG:no KEGG:SAAV_0809 NR:ns ## KEGG: SAAV_0809 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_ED98 # Pathway: not_defined # 1 80 21 100 108 87 68.0 1e-16 MKYNVKNFKSIDFTSCERDPMGGYAIKGYINNNNKLSFTASAYLDEKNQFEGDYSSTEEF DKIIIKNPKTVSEIKKEEKNKQNEN >gi|224999909|gb|ACJC01000091.1| GENE 4 1277 - 1684 335 135 aa, chain + ## HITS:1 COG:no KEGG:SLGD_01833 NR:ns ## KEGG: SLGD_01833 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 26 131 1 106 108 130 72.0 1e-29 MKIKTKTLVLLILVIVTILLSIYLKMKFDEKKAAEEKYYNQQKGRIELFMKYNVKGYKNT HFTKIERNTMDGYDISGYVNSDKDKSFTAGIRSTEDFQFDGDITSSNNLEVLYHNNIKSV SEIKKEQSKKEANKN >gi|224999909|gb|ACJC01000091.1| GENE 5 2198 - 2431 365 77 aa, chain - ## HITS:1 COG:no KEGG:SERP0457 NR:ns ## KEGG: SERP0457 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 77 1 77 77 119 94.0 3e-26 MKFREWTITINGKGPINVVANEDTLLILQEYQHVEVALKIDNETVQVKSLGYNEDVIINP NTKEITINVTNFLDDDE >gi|224999909|gb|ACJC01000091.1| GENE 6 3044 - 4351 937 435 aa, chain - ## HITS:1 COG:SA1815 KEGG:ns NR:ns ## COG: SA1815 COG0168 # Protein_GI_number: 15927583 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 435 1 435 435 545 74.0 1e-155 MSKVNKPLYFYLMLFLLTTFIGAFLLYLPYTGRKPINFIDALFVASSAFTVTGLSPVDVG TQFNIFGEIIILLLIQIGGLGIVTVAMLTLIFLNKKISINNRILFMITWNIDEPGGVIKL IKHLAIYSIATELFGTLCLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDFS NDPVIIITIPILIILGGLGHLVVVDLWNAKNFRKLSLHSKLVLTTTGLLILIGTVFFFLL ENQNSMLHMGLIEKIGNAFFQSVTTRTAGFNTIDVGNIKTPTALLLMALMFIGGAPLSAA GGIKVTTFVVATIAIFNTIRKEKNNSIFNREISERYIQLSVVTILISIAFIGIVTFILTI INSNIPLIKILFEVVSAFGTVGLTMDLTSEYYNWTEFIIIIVMLCGKIGLLNISRALVPP KDPKNYRYTKGHIHL >gi|224999909|gb|ACJC01000091.1| GENE 7 4576 - 4920 251 114 aa, chain + ## HITS:1 COG:no KEGG:SERP0460 NR:ns ## KEGG: SERP0460 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 114 1 114 114 157 92.0 1e-37 MRSVIKLENAFIFIITIAVYFKLEFSIWLFLLLLLVPDIFMLGYVINRKTGSYVYNIGHT YIIPIIIALLYLYIDEKLLLQIALIWLAHISMDRTMGFRLKYSSDTDKTTIQKI >gi|224999909|gb|ACJC01000091.1| GENE 8 5139 - 5555 515 138 aa, chain - ## HITS:1 COG:no KEGG:SE0574 NR:ns ## KEGG: SE0574 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 138 1 138 138 231 94.0 6e-60 MELYSMPMFNKILVNDIEKSSEWYQENLGFKSIFKFKNEQNQILMEHLRLAKYQDMMLIS GKQFEVGNAVYTNILVPNIRILKQRISSQYIVEDLEEKPWNSIEMTIKDLDNHLITLTQG NIRDEEFNALMQHTSKNF >gi|224999909|gb|ACJC01000091.1| GENE 9 5966 - 6160 154 64 aa, chain - ## HITS:1 COG:no KEGG:SE0575 NR:ns ## KEGG: SE0575 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 64 1 64 64 73 98.0 2e-12 MLYVIIGFFIIGIGLYIFSFFLAQNQGLSYKSHCRNFSAVFISLGVLCLMGYLVHYISKH YLGI >gi|224999909|gb|ACJC01000091.1| GENE 10 7040 - 7543 423 167 aa, chain - ## HITS:1 COG:SA0175 KEGG:ns NR:ns ## COG: SA0175 COG3477 # Protein_GI_number: 15925885 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Staphylococcus aureus N315 # 12 166 9 164 164 211 69.0 5e-55 MKHQKNQSRFKLLIAGIIAGLLSGVVKLGWEVMFPPRTPSRNATNPPQQLLQLLGIPSDI THLTYNFSEHALPWISFIVHYSFSIVIAIIYIYIAKKYTKITLGYGALFGIVIWIVFHLI LMPIMHVVPNAFDQPFSEHLSEFFGHIVWMMVIEMVRRYFYNIQLNK >gi|224999909|gb|ACJC01000091.1| GENE 11 7829 - 8770 640 313 aa, chain + ## HITS:1 COG:SA0163 KEGG:ns NR:ns ## COG: SA0163 COG1230 # Protein_GI_number: 15925872 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Staphylococcus aureus N315 # 3 311 10 318 319 381 68.0 1e-106 MENKPDYFHHIEHRKFQSSSKITLWLSLVITMIFTVVEFVGGIVSNSLALLSDSFHMLSD VLALGLSMVAIYFSSKPPTKNYTYGFLRLEIIVAFLNGLALIVISLGIMYEGIMRIIHPR PVESGIMILIAFIGLIANIVLTIILMISLKKENNINIQSALWHFIGDLLNSLGIIVAFVL IHFTGWNIVDPIISILISLIILRGGYKIIKNASKVLMERVPDRYDTDEIMGAMKDVEGVI DIHEFHLWSVTTNQSSLSAHVVLSDDYIKSPYATINKVSDLLKTQYGLEHVTLQIENINL NHLDEDYFKQLQE >gi|224999909|gb|ACJC01000091.1| GENE 12 10139 - 10339 324 66 aa, chain + ## HITS:1 COG:SA0747 KEGG:ns NR:ns ## COG: SA0747 COG1278 # Protein_GI_number: 15926469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Staphylococcus aureus N315 # 1 66 1 66 66 103 92.0 6e-23 MNNGTVKWFNAEKGFGFIERENGGDVFVHFSAIVEDGYKSLEEGQSVEFDIVEGERGEQA ANVVKM >gi|224999909|gb|ACJC01000091.1| GENE 13 10960 - 11184 277 74 aa, chain - ## HITS:1 COG:no KEGG:SERP0467 NR:ns ## KEGG: SERP0467 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 73 1 73 74 121 97.0 6e-27 MKDWTINNHSKRQLIIQNNHDDISIIEPLRNGSFKILAEFNALNTDYIQIYDHTLVVSIH EKEISVFDRSSQST >gi|224999909|gb|ACJC01000091.1| GENE 14 11209 - 11493 351 94 aa, chain - ## HITS:1 COG:no KEGG:SERP0468 NR:ns ## KEGG: SERP0468 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 94 1 94 94 162 100.0 2e-39 MENLTKEQKYTIAKFYKLYMERSNAGQPEEEANHFKDSVTAQDDYFCDRKYEDFIHNCKV LINEGYLDGEVEDNKIYNIQVTTKAFTEIERSFG >gi|224999909|gb|ACJC01000091.1| GENE 15 11592 - 12338 745 248 aa, chain - ## HITS:1 COG:BS_yndL KEGG:ns NR:ns ## COG: BS_yndL COG4195 # Protein_GI_number: 16078845 # Func_class: R General function prediction only # Function: Phage-related replication protein # Organism: Bacillus subtilis # 21 240 31 244 252 117 32.0 2e-26 MRNKDNQHSRLYYIILTIVIIAICVVVVILFNTLKTNRSHSTDRYADFTELKKDTIKNKD WRIKTKHRKNKDILVTAIHGGGIEPGTTEIARRISNVGKYNFYTFEGLRKSNNDQLHVTS THFNEPILDKLLKNTKETLSIHGFSGDDPIVYIGGKDKKMSHSIAKELRKKDFTVKESPN RIDAKSSDNIANKNESNSGVQLELTTALRKQFFKHYKLDRHTRSDSDKYTKDFYKFANAV QKGVEKVN >gi|224999909|gb|ACJC01000091.1| GENE 16 12552 - 12785 191 77 aa, chain + ## HITS:1 COG:no KEGG:SERP0470 NR:ns ## KEGG: SERP0470 # Name: not_defined # Def: flagellar hook-length control protein-related protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 77 2 78 78 133 97.0 2e-30 MNKNLLKKYLNDDSFKAVVVVIGNKRIVLENDIHVDYENEVIIYPCKNCTRIIPFSSISY LELIDKQDQFINFFKEG >gi|224999909|gb|ACJC01000091.1| GENE 17 12844 - 13398 431 184 aa, chain - ## HITS:1 COG:no KEGG:SERP0471 NR:ns ## KEGG: SERP0471 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 184 1 184 184 350 95.0 1e-95 MKLTSKSIYLSFIFFIFSLMLFTNQSFANDNKSFQLKPGDIIITKGPVLNGFFGHCSLAI DHDTVLQIEGPGDKPLTEDFESYRDRYGKGKNEWIKVYRCSHPNAGSKAAQWAKNHYEDS DSEYLVTLNLKSKTFTYCTKIIYQAYKYGVDKNSVSDHGLYIISPYALTDNFTDEYKLKL VKTY >gi|224999909|gb|ACJC01000091.1| GENE 18 13588 - 13776 272 62 aa, chain - ## HITS:1 COG:no KEGG:SERP0472 NR:ns ## KEGG: SERP0472 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 62 1 62 62 66 98.0 3e-10 MSLHFQILLWLSILFIIAGTILLVTMLKTKREERKESYLGFTVIFLIFGFAILIYTFIFG IL >gi|224999909|gb|ACJC01000091.1| GENE 19 13801 - 14058 124 85 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242242185|ref|ZP_04796630.1| ## NR: gi|242242185|ref|ZP_04796630.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 85 1 85 85 93 100.0 4e-18 MKLNKANVFNLIFTILFFTFNILITYNANIDYKLWLIPGLAICGFALFSSLTLVIIYSDL FSEILFFINIILALYYIYPIFYEFV >gi|224999909|gb|ACJC01000091.1| GENE 20 14459 - 14662 273 67 aa, chain + ## HITS:1 COG:no KEGG:SERP0474 NR:ns ## KEGG: SERP0474 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 67 1 67 67 117 97.0 2e-25 MSFYDFILGFINDDTPLGHLAQYILNDAGFPKEEKNNNSIRTYVLLNYNDRQLIESTNRA ISLYQLI >gi|224999909|gb|ACJC01000091.1| GENE 21 14654 - 14890 317 78 aa, chain - ## HITS:1 COG:no KEGG:SERP0475 NR:ns ## KEGG: SERP0475 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 78 1 78 78 139 98.0 3e-32 MSAHSQCNYVNPNSISLDWECLIISKTDMLLDGVPKELINTWLDQNVIEPFCVRNNEINF KTKDVWNALKTHNWYYSN >gi|224999909|gb|ACJC01000091.1| GENE 22 15125 - 15691 670 188 aa, chain + ## HITS:1 COG:SAS020 KEGG:ns NR:ns ## COG: SAS020 COG0406 # Protein_GI_number: 15926477 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Staphylococcus aureus N315 # 1 185 8 191 193 201 52.0 5e-52 MRHGQTVFNLKGKIQGASDSPLTALGVQQANAAQQYFKTKNIHFDYLYSSPQQRARDTLE NTVPNQQYWCVKDLKEWGFGLFEGESIELLRAIKQPKYLYGDAVVPFEGESRSEVEQRVN RALYEMMDTTDGETILAVSHGSTIGLFVRNILGYDRGSKFEIGNCNIVKFEYDGEEFIFK DIINPIKK >gi|224999909|gb|ACJC01000091.1| GENE 23 15962 - 16462 441 166 aa, chain - ## HITS:1 COG:SA0754 KEGG:ns NR:ns ## COG: SA0754 COG0454 # Protein_GI_number: 15926479 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 159 1 159 164 127 44.0 8e-30 MNNIRLLNQNDLDSYIELMKFGHHNYEWDRYYLENVGIDRLKTILSNHTDYWNIFGAFED DELVATCTLKQMNYVGKCHKAILENNFVKNNDEIVNRELINHIIQYAKEHNIETLMIAIA SNNISAKVFFSSIGFENLAFEKNASKIGDEYFDENWLIYSTTESSE >gi|224999909|gb|ACJC01000091.1| GENE 24 16413 - 16586 104 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFFMVTKRLLRIFNNSFIMYLISLNFKNHFLFMLFLLMGGHHEQYPFIESKRFGFLY >gi|224999909|gb|ACJC01000091.1| GENE 25 16868 - 17290 600 140 aa, chain - ## HITS:1 COG:SA0755 KEGG:ns NR:ns ## COG: SA0755 COG1764 # Protein_GI_number: 15926481 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 1 140 1 140 140 223 81.0 6e-59 MAVQYETKATNVGGRKGHVHTDDNAINVDVLPPQQADGKATNPEQLFAAGYASCFNGAFD LILKQNKVRDAEPEVTLTVRLEDDPDAESPKLSVDIHAKVKNVLSQEDAEKYLQDAHDFC PYSKATRGNIDVNLNVEVVE >gi|224999909|gb|ACJC01000091.1| GENE 26 17451 - 18167 518 238 aa, chain + ## HITS:1 COG:SA0756 KEGG:ns NR:ns ## COG: SA0756 COG0710 # Protein_GI_number: 15926482 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Staphylococcus aureus N315 # 1 236 1 238 238 247 52.0 2e-65 MTHVDIAATIAPEEKLSKTLLNDIKINEKSIDIVELRIDQWPSFNKALLKEVIKQLKIFH LKILVTYRTSIQGGKGAVNEQEYLNILGELIECPQFDMIDIEWSSAVNIEKYMLLVQRAQ QKGLEVVLSHHNFQETPALDELKFIYFKMQKLNPDYLKLAVMPKSQEDVLHLLEAMSLTA KHTTCRIVGISMSSLGKVSRIAQGVFGGTLSYGCIEEPQAPGQIHVSKLKSLVSFYED >gi|224999909|gb|ACJC01000091.1| GENE 27 18248 - 18790 465 180 aa, chain + ## HITS:1 COG:SA0757 KEGG:ns NR:ns ## COG: SA0757 COG0778 # Protein_GI_number: 15926483 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Staphylococcus aureus N315 # 1 179 1 179 179 277 73.0 8e-75 MELQEAISNRRSVKKFKHDMVVDDQTVYDAIYKAADAPNHGMREPWRLVHISKDKLGDFS RDITRFAFPDSPEKREDHFHAVTNLGGMLLLILKDDPRQRQSRENYFAFGAFAQNLMLLL YEAGIGTCWKSPQYIFDPKIRKVLGVKDNEILAGFLYLTDLEEVPTKAKRKNKNLITEFE >gi|224999909|gb|ACJC01000091.1| GENE 28 18966 - 19289 456 107 aa, chain - ## HITS:1 COG:SA0758 KEGG:ns NR:ns ## COG: SA0758 COG0526 # Protein_GI_number: 15926484 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 103 1 103 106 159 72.0 9e-40 MKNIHQTEEFNSTIDSTDPVIIKFEADWCPDCKAMDMWIDPIVEKYNNYQWYVVDRDELE DVTTENDVMGIPSILIFQNGEKLAHLHSANAKSPEQVESFLSEHLDQ >gi|224999909|gb|ACJC01000091.1| GENE 29 19433 - 19786 245 117 aa, chain + ## HITS:1 COG:SA0759 KEGG:ns NR:ns ## COG: SA0759 COG1393 # Protein_GI_number: 15926485 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Staphylococcus aureus N315 # 1 117 1 117 118 172 73.0 2e-43 MIKFYQYPKCTTCKKAAKFLDEHDVNFESIDIVQHTPTKKEFKDIVDKTGVNINKLFNTH GIKYRELNLKEKLKNMSDDEKLELLASDGMLVKRPLAISGNHLTLGFKENEYQHQWL >gi|224999909|gb|ACJC01000091.1| GENE 30 19960 - 20340 522 126 aa, chain + ## HITS:1 COG:SA0760 KEGG:ns NR:ns ## COG: SA0760 COG0509 # Protein_GI_number: 15926486 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Staphylococcus aureus N315 # 1 126 1 126 126 179 89.0 1e-45 MAVPSEFKYSKEHEWVKIENNVATIGITEYAQNELGDIVFVELPETDDELNEGDTFGSVE SVKTVSELYAPISGKIVEVNEELEDSPEFVNESPYEKAWMVKIEISDDSQLEELLSADQY SEMIGE >gi|224999909|gb|ACJC01000091.1| GENE 31 20746 - 21177 498 143 aa, chain + ## HITS:1 COG:SA0768 KEGG:ns NR:ns ## COG: SA0768 COG1658 # Protein_GI_number: 15926495 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Staphylococcus aureus N315 # 16 143 1 128 128 210 81.0 6e-55 MMIVTVTLTLRRWIDMAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKIDNMI ETLYDKQVYVLADSDDEGEKIRKWFKRYLSESEHIYVDKTFCEVAKCPKNYLAHVLSRYG FNVKKEKKLMNNLKTERLVLVNE >gi|224999909|gb|ACJC01000091.1| GENE 32 21170 - 21466 245 98 aa, chain + ## HITS:1 COG:SAS023 KEGG:ns NR:ns ## COG: SAS023 COG0526 # Protein_GI_number: 15926496 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 98 1 98 98 139 72.0 1e-33 MNKLKDIEDITVNFNKDKHLIFGYTPMCGTCKISERMLDIANEILQLPIKKIDLNFYPEW SKEKQIMSVPVLLLMRRDEEIKRIYAFQSVTYLLENLK >gi|224999909|gb|ACJC01000091.1| GENE 33 21720 - 22745 840 341 aa, chain + ## HITS:1 COG:SA0769 KEGG:ns NR:ns ## COG: SA0769 COG1135 # Protein_GI_number: 15926497 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 341 1 341 341 530 78.0 1e-150 MIKLNQIVKRYHTKDKDVLAVDHVDLNIESGSIFGVIGFSGAGKSTLIRMFNNLESPTSG EIIIDGDNISQLSKSQLRKKRQKVSMIFQHFNLLWSRNVLKNVTFPLEIAGVPSGRAKQK ALELIELVGLKGRESAYPSELSGGQKQRVGIARALANDPDVLLCDEATSALDPQTTDEIL DLLLKVREQQNLTIVLITHEMHVIRRICDEVAVMENGKVIEQGAVSKVFENPQHEVTKRF VKDDLNDDFEDSLEYLEPLDYDAYIVRLNFTGDNTTEPIISYMTKTHNIDVNILEADIKN TKNGSLGFLVIHIPHISEGHFKQFKHNLHEQHVNVEVLRHG >gi|224999909|gb|ACJC01000091.1| GENE 34 22738 - 23433 822 231 aa, chain + ## HITS:1 COG:SA0770 KEGG:ns NR:ns ## COG: SA0770 COG2011 # Protein_GI_number: 15926498 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Staphylococcus aureus N315 # 1 231 1 231 231 298 89.0 6e-81 MGKSYGEIFHEMVTMPNVQWPEVWQAILETLYMTVVSTLFAFVFGLILGVLLFLSAKSNS LAAKIFYTIVSFIVNLFRAIPFIILILLLIPFTSVLLGTISGPTGALPALIIGAAPFYAR LVEIAFKEIDKGVIEAAWSMGANTWIVVRKVLLPEAMPALVSGITVTAIALVGSTAIAGV IGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFLGDWLTNKIDKR >gi|224999909|gb|ACJC01000091.1| GENE 35 23454 - 24266 1138 270 aa, chain + ## HITS:1 COG:SA0771 KEGG:ns NR:ns ## COG: SA0771 COG1464 # Protein_GI_number: 15926499 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 1 270 1 273 273 392 82.0 1e-109 MKKLFGIILVLALTIALAACGGGKDKEKTITVGASPAPHAEILEKAKPLLKKKGYDLKIK PINDYTTPNKLLDKGEIDANFFQHTPYLNTESKEKGYKIESAGNVELEPMAVYSKKYKSL KDLPKGATVYVSNNPAEQGRFLKFFVDEGLIKLKKGVKIENAKFDDITENKKDIKFNNKQ SAEYLSKIYQNQDADAVIINSNYAIDQKLSPKKDSIALESPKDNPYANLIAVKKGHKDDE NIKVLMEVLQSKEIQDYIKDKYDGAVVPAK >gi|224999909|gb|ACJC01000091.1| GENE 36 24535 - 24693 180 52 aa, chain - ## HITS:1 COG:no KEGG:SE0603 NR:ns ## KEGG: SE0603 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 52 1 52 52 93 100.0 3e-18 MKFITIKAITEKGLDKKVNQFLKSHPQIEIIKFDYQMGYSGVSVGILYRDNI >gi|224999909|gb|ACJC01000091.1| GENE 37 24868 - 25059 429 63 aa, chain + ## HITS:1 COG:no KEGG:SERP0494 NR:ns ## KEGG: SERP0494 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 63 1 63 63 68 100.0 5e-11 MAEDKFEQAKGNIKETVGNATDNKELEKDGKGDKASGKAKEAVENVKEKANDVIDKFKGN KGD >gi|224999909|gb|ACJC01000091.1| GENE 38 25124 - 25984 828 286 aa, chain - ## HITS:1 COG:SA0773 KEGG:ns NR:ns ## COG: SA0773 COG2035 # Protein_GI_number: 15926501 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 283 1 283 283 324 69.0 1e-88 MKKFKWINIFKGFGMGTSDLVPGVSGGTIALLLGIYEDFISSISGLFSRRFWPSLKFLLP ILIGMLIAIGLLSQLFNYLLSQHHIPTMLFFTGLILGIIPYLLTISNFKKNFSILHYFIL LLGIAVIVVFALLNHGDKHTGETLTLSFSLIIKYFIAGVFASSAMLLPGISGSFMLLVFG VYGTLMYAISELLHFNLNALPIILIVGFGIVTGFMISSRLIQYCLHQHPTMTFALIIGFV IGSLYAVFPGFPKDLIQWIISFFLLVTGFLVSYVLGKITAKNEASF >gi|224999909|gb|ACJC01000091.1| GENE 39 26306 - 27067 182 253 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 232 2 224 245 74 25 7e-13 MSSTLEIKDLHVSIEDKEILKGVNLTINTGEIHAIMGPNGTGKSTLSSAIMGHPSYEVTQ GEVLLDGVNILELDVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQ FIKKLDKQMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDID ALKVVSKGINQMRGEEFGALMITHYQRLLNYITPDQVHVMYGGKVVKSGGPELAKRLEEE GYEWVKEEFGAAE >gi|224999909|gb|ACJC01000091.1| GENE 40 27162 - 28469 1597 435 aa, chain + ## HITS:1 COG:SA0775 KEGG:ns NR:ns ## COG: SA0775 COG0719 # Protein_GI_number: 15926503 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Staphylococcus aureus N315 # 1 435 1 435 435 734 87.0 0 MTTKTLNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDTFKQ HHTTGDSYHQLTDLPKSVKEIIDVENSENLIIQHNNDLAYTQVSDQAKNDGVIIEGLSEA LVNHSDLVQKYFMTKAVNVDEHRLTALHTALVNGGIFVYVPKNTVVEHPIQYVVLHDDEQ ASFYNHVIIVTEESAEVTYVENYLSTTSGEDNQLNIVSEVIAGANSNVTYGSVDYLDKGF TGHIIRRGSADADASINWALGLMNEGSQIIDNTTNLNGDRSTSALKSVVVGTGDQKINLT SKIVQYGKETDGYILKHGVMKENASSVFNGIGYIKHGGTKSIANQESRVLMLSENARGDA NPILLIDEDDVEAGHAASVGRVDPEQLYYLMSRGISRAEAERLVIHGFLDPVVRELPIDD VKRQLREVIERKVSK >gi|224999909|gb|ACJC01000091.1| GENE 41 28537 - 29778 1453 413 aa, chain + ## HITS:1 COG:SA0776 KEGG:ns NR:ns ## COG: SA0776 COG0520 # Protein_GI_number: 15926504 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Staphylococcus aureus N315 # 1 413 1 413 413 753 88.0 0 MAEHSLDVKAVIKDFPILEQKVNNKRLAYLDSTATSQTPVQVLNVLDDYYKRYNSNVHRG VHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINIVAHSYGDAHISEGDEIV VTEMEHHANIVPWQQLAKRKNATLKFIPMTKDGELQLDDIKATINDKTKIVAIAHVSNVL GTINDVKTIAKIAHEHGAVISVDGAQSAPHMALDMQDIDADFYSFSGHKMLGPTGIGVLY GKRELLQNMEPVEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYIENLG FNAIYQHEKELTEYAYEQMLSIDGLEIYGPPKDRRAGVITFNLEDIHPHDVATAVDTEGV AVRAGHHCAQPLMKWLGVSSTARASFYVYNTKEDVDQLVQALKQTKEFFSYEF >gi|224999909|gb|ACJC01000091.1| GENE 42 29768 - 30232 622 154 aa, chain + ## HITS:1 COG:SA0777 KEGG:ns NR:ns ## COG: SA0777 COG0822 # Protein_GI_number: 15926505 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Staphylococcus aureus N315 # 1 154 1 154 154 280 95.0 1e-75 MNFNNLDQLYRSVIMDHYKNPRNKGVLDNGSMTVDMNNPTCGDRIRLTFDIEDGIINDAK FEGEGCSISMSSASMMTEAVKGHSLGEAMQMSQEFTKMMLGEDYEITEEMGDIEALQGVS QFPARIKCATLAWKALEKGTVEKEGKSEGTTEED >gi|224999909|gb|ACJC01000091.1| GENE 43 30438 - 31835 1547 465 aa, chain + ## HITS:1 COG:SA0778 KEGG:ns NR:ns ## COG: SA0778 COG0719 # Protein_GI_number: 15926506 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Staphylococcus aureus N315 # 1 465 1 465 465 896 95.0 0 MAKQAPDVGDYKYGFHDEDISIFRSERGLTENIVTEISKMKEEPQWMLDFRLKALKLFYK MPMPQWGGDLSELDFDDITYYVKPSEHTERSWDEVPEEIKRTFDKLGIPEAEQKYLAGVS AQYESEVVYHNMEKELEEKGIIFKDTDSALRENEELFREYFASVVPAADNKFAALNSAVW SGGSFIYVPKNVKLDTPLQAYFRINSENMGQFERTLIIADEGASVNYVEGCTAPVYSTSS LHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMKYP NCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNGGKVIYRGIV HFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMS RGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG >gi|224999909|gb|ACJC01000091.1| GENE 44 32689 - 32994 112 101 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242210|ref|ZP_04796655.1| ## NR: gi|242242210|ref|ZP_04796655.1| hypothetical protein HMPREF0791_0736 [Staphylococcus epidermidis W23144] # 1 101 1 101 101 137 100.0 2e-31 MSNKIINTMKKLEKIIDNPHEKLTPDQYESMSVNIQLSRIKSYISIVVLIMLFLANIFIR VLEIKSKEFQGIETIIIIVMLVSIAYFIIDFILWIKRKNFL >gi|224999909|gb|ACJC01000091.1| GENE 45 33380 - 33866 499 162 aa, chain + ## HITS:1 COG:SA0780 KEGG:ns NR:ns ## COG: SA0780 COG4536 # Protein_GI_number: 15926508 # Func_class: P Inorganic ion transport and metabolism # Function: Putative Mg2+ and Co2+ transporter CorB # Organism: Staphylococcus aureus N315 # 16 161 16 161 346 216 76.0 1e-56 MIIAIILLIFVSFFFSGSETALTAANRTKFQTEAKKGDRKAQGLTKLLDKPSEFITAILI GNNVANIILPTLVTILAIDIGVNVGIASAIVTIVIILISEVIPKSIAATFPDKISKLVYP IIHICVIVLKPITILLNKMTDGINHLLSRGQPVEKRFSKEEI Prediction of potential genes in microbial genomes Time: Sun May 29 07:36:52 2011 Seq name: gi|224999908|gb|ACJC01000092.1| Staphylococcus epidermidis W23144 contig00132, whole genome shotgun sequence Length of sequence - 5013 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 115 - 174 8.1 1 1 Op 1 3/0.000 + CDS 324 - 1172 1023 ## COG1801 Uncharacterized conserved protein 2 1 Op 2 3/0.000 + CDS 1185 - 2012 612 ## COG0730 Predicted permeases + Prom 2015 - 2074 4.4 3 1 Op 3 1/0.000 + CDS 2098 - 3417 1401 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Prom 3420 - 3479 8.2 4 1 Op 4 1/0.000 + CDS 3506 - 4420 1068 ## COG0320 Lipoate synthase + Term 4449 - 4478 0.5 + Prom 4432 - 4491 4.4 5 1 Op 5 . + CDS 4606 - 4995 511 ## COG4470 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|224999908|gb|ACJC01000092.1| GENE 1 324 - 1172 1023 282 aa, chain + ## HITS:1 COG:SA0782 KEGG:ns NR:ns ## COG: SA0782 COG1801 # Protein_GI_number: 15926510 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 282 1 282 282 464 79.0 1e-130 MIEIGLTGWGDHDTLYEDLERKTDKLKTYASHFPIVELDASYYAIQPERNIIKWINETPN RFQFVVKIHQALTLHADYRDYAESRDVLFKQFKEMINPLKEHNKLAMVLVQFPPWFDCNV QNINYILYVRKQLSDIPMSIEFRHQSWFDNQYKEQTLSFLTQHQIIHAVVDEPQIKEGSI PLVNRITSDIAFVRYHGRNHYGWTKKDMTDQEWRDVRYLYDYSEEELADLARKVEILNQK AKKVYVIFNNNSGGHAANNAKKYQNILDIDYEGLAPQQLKLF >gi|224999908|gb|ACJC01000092.1| GENE 2 1185 - 2012 612 275 aa, chain + ## HITS:1 COG:SA0783 KEGG:ns NR:ns ## COG: SA0783 COG0730 # Protein_GI_number: 15926511 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 1 275 1 275 275 344 86.0 1e-94 MLLTIILLILIGGFSAILGSIVGIGGGIIIVPTLVYLGVNHHLLHGITTQIAIGTSSVIL IVTGLSSSLGYLKTKQVDIKNGSIFLFGLLPGSLVGSFLSRYLTLDSFNLYFGVFMIFVS ILLMIRHKIKPFKIFDKPKYARTYVDAEGKTYRYSVPPLFAFITTLFIGILTGLFGIGGG ALMTPLMLIVFRFPPHVAVGTSMMMIFFSSVMSSIGHILQGHVAWGYSIILIISSVIGAQ IGVRVNRSMKSDTVVMLLRTVMLIMGVYLIIKSFI >gi|224999908|gb|ACJC01000092.1| GENE 3 2098 - 3417 1401 439 aa, chain + ## HITS:1 COG:SA0784 KEGG:ns NR:ns ## COG: SA0784 COG0737 # Protein_GI_number: 15926512 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 1 438 1 438 439 641 70.0 0 MELTIYHTNDIHSHLNEYARIQAYMAKHRPQLEHPSLYIDIGDHVDLSAPVTEATVGHKN IELLNEAHCDIATIGNNEGMTISHDALQNLYNDANFKVICTNVIDEEGQLPHHIASSYIK EIKGTRILFVAATAPFTPFYRALDWIVTDPLAAIKDEINAHQGEYDLLMVMSHVGIFFDE KLCQEIPEIDVIFGSHTHHHFEHGEINNGVLMAAAGKYGYYLGEVNITIENGKIVDKIAK IHPIETLPLVETHFEEEGRALLSKPVVNHHVNLVKRTDVITRTSYLLAESVYEFSRADCA IVNAGLIVNGIEADKVTEYDIHRMLPHPINIVRIRLTGKQLKQVIQKSQKQEYMHEHAQG LGFRGDIFGGYILYNLGFIESEDRYFIGDEEIQNDKQYTLGTVDMYTFGRYFPLLKGLST DYIMPEFLRDIFKEKLLKL >gi|224999908|gb|ACJC01000092.1| GENE 4 3506 - 4420 1068 304 aa, chain + ## HITS:1 COG:SA0785 KEGG:ns NR:ns ## COG: SA0785 COG0320 # Protein_GI_number: 15926513 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Staphylococcus aureus N315 # 1 304 1 304 305 578 95.0 1e-165 MATRNEEILRKPDWLKIKLNTNDNYTGLKKMMREKNLHTVCEEAKCPNIHECWGARRTAT FMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDQGS NVYAETVRKVRERNPFTTIEILPSDMGGDYEALETLMASRPDILNHNIETVRRLTPRVRA RATYDRTLQFLRRSKELQPDIPTKSSLMVGLGETMEEIYETMDDLRANDVDILTIGQYLQ PSRKHLKVEKYYTPLEFGKMRKIAMEKGFKHCQAGPLVRSSYHADEQVNEAAKEKQRQGE EQLN >gi|224999908|gb|ACJC01000092.1| GENE 5 4606 - 4995 511 129 aa, chain + ## HITS:1 COG:SA0786 KEGG:ns NR:ns ## COG: SA0786 COG4470 # Protein_GI_number: 15926514 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 121 1 126 127 160 77.0 5e-40 MIKVDQQYFELIEEYRECFDEEIFSARYSDILDKYDYVVGDYGYDQLRLKGFYKDSNKKA EISKRFSSIQDYILEYCNFGCPYFVVRRLSPNEFIEEMDDKEDIIDKLHDVKIQPTIQDT EKHTRAIDQ Prediction of potential genes in microbial genomes Time: Sun May 29 07:36:58 2011 Seq name: gi|224999907|gb|ACJC01000093.1| Staphylococcus epidermidis W23144 contig00133, whole genome shotgun sequence Length of sequence - 17153 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 12, operones - 4 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 4 - 43 0.3 1 1 Tu 1 . - CDS 159 - 425 382 ## SERP0513 hypothetical protein + Prom 456 - 515 7.2 2 2 Op 1 2/0.750 + CDS 544 - 978 535 ## COG2445 Uncharacterized conserved protein 3 2 Op 2 1/1.000 + CDS 978 - 1757 946 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 4 2 Op 3 . + CDS 1799 - 2770 1009 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 2777 - 2831 10.6 5 3 Op 1 6/0.000 + CDS 3337 - 4794 1423 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 6 3 Op 2 7/0.000 + CDS 4791 - 6005 1083 ## COG1696 Predicted membrane protein involved in D-alanine export 7 3 Op 3 6/0.000 + CDS 6023 - 6259 428 ## COG0236 Acyl carrier protein 8 3 Op 4 . + CDS 6256 - 7494 1086 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) + Term 7623 - 7677 14.0 - Term 7718 - 7771 3.2 9 4 Tu 1 . - CDS 7790 - 8032 394 ## COG0694 Thioredoxin-like proteins and domains - Prom 8073 - 8132 10.0 + Prom 8045 - 8104 5.3 10 5 Tu 1 . + CDS 8132 - 8452 308 ## COG4837 Uncharacterized protein conserved in bacteria + Term 8596 - 8663 14.7 - Term 8593 - 8637 4.1 11 6 Tu 1 . - CDS 8646 - 9710 1053 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 9878 - 9937 11.5 + Prom 9822 - 9881 8.3 12 7 Op 1 1/1.000 + CDS 9997 - 10242 156 ## COG4844 Uncharacterized protein conserved in bacteria 13 7 Op 2 1/1.000 + CDS 10272 - 10631 555 ## COG0316 Uncharacterized conserved protein + Prom 10665 - 10724 6.1 14 8 Tu 1 1/1.000 + CDS 10835 - 12109 1489 ## COG1252 NADH dehydrogenase, FAD-containing subunit + Term 12243 - 12287 6.2 + Prom 12272 - 12331 8.2 15 9 Tu 1 . + CDS 12430 - 13911 1639 ## COG0260 Leucyl aminopeptidase 16 10 Tu 1 . - CDS 13985 - 14167 118 ## - Prom 14414 - 14473 5.6 + Prom 13947 - 14006 7.3 17 11 Op 1 1/1.000 + CDS 14097 - 15413 1467 ## COG2056 Predicted permease 18 11 Op 2 . + CDS 15436 - 15810 522 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism + Term 15818 - 15878 16.2 - Term 15809 - 15863 17.0 19 12 Tu 1 . - CDS 15869 - 17023 973 ## SERP0531 hypothetical protein - Prom 17060 - 17119 10.8 Predicted protein(s) >gi|224999907|gb|ACJC01000093.1| GENE 1 159 - 425 382 88 aa, chain - ## HITS:1 COG:no KEGG:SERP0513 NR:ns ## KEGG: SERP0513 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 88 1 88 88 143 100.0 2e-33 MIDMYLYDDEEQSQVQFVGFVGEHSRYDLMLVQTDRHYGKTLVLNMQTNQFGIIGSDDIE EEGYISHILGVSKEEADEIIEYLNEVIQ >gi|224999907|gb|ACJC01000093.1| GENE 2 544 - 978 535 144 aa, chain + ## HITS:1 COG:SA0789 KEGG:ns NR:ns ## COG: SA0789 COG2445 # Protein_GI_number: 15926517 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 143 1 143 144 205 76.0 2e-53 MYFVDKDKLTQKITYLQKLTEDYNDNKRNPYAFERIGQMLIESSVDIGNMIIDGFILRDP GNYKDVIDILELENVISKETQSHINRTIDVRKQFAHHYIDLNMNKIEPLFDDALPYYKQF IQEVGQFLENENVPITAFGKGENN >gi|224999907|gb|ACJC01000093.1| GENE 3 978 - 1757 946 259 aa, chain + ## HITS:1 COG:SA0790 KEGG:ns NR:ns ## COG: SA0790 COG0647 # Protein_GI_number: 15926518 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 259 1 259 259 400 85.0 1e-111 MKHYQAYLIDLDGTMYKGTEEIDGAAQFIDYLNNNHIPHLYVTNNSTKTPVQVTEKLREM HIDAKPDEVVTSALATADYISEQHPNATVYMIGGHGLKTALTDAGLSIKNDEHVDYVVIG LDEKVTYEKLSIATLAVRNGAKFISTNPDVSIPKERGFLPGNGAITSVVSVSTGIQPEFI GKPETIIMSKSLDILGLEKSEVAMVGDLYDTDIMSGINVGIDTIHVQTGVSTYEDIQSKE IPPTYSFKDLNVAIAELEK >gi|224999907|gb|ACJC01000093.1| GENE 4 1799 - 2770 1009 323 aa, chain + ## HITS:1 COG:SA0791 KEGG:ns NR:ns ## COG: SA0791 COG1052 # Protein_GI_number: 15926519 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 318 1 318 319 420 61.0 1e-117 MNKILVTRQIPQHYIEQLKKIGQVVMWEHDLTPMSRESFLANVEDATACVITLSEHIDEE VFLRAQQLKVIANMAVGFDNIDITLAKKHGVVVTNTPHVLTETTAELGFTLMLTVARRII EATSYIQEGKWKSWGPYLLSGKDVYGATVGIFGMGDIGKAFARRLQGFDARIIYHNRKRD LIAERELNATYVTFSSLLEQSDFIICTAPLTKETENQFDNRAFNKMKNDAVFINIGRGAI VDEEALLEALKNHEIQACGLDVMRQEPIQPDHPILKLPNAVVLPHIGSSSQVTRNRMVQL CIDNIKAVLNNDAPLTPVTPLHI >gi|224999907|gb|ACJC01000093.1| GENE 5 3337 - 4794 1423 485 aa, chain + ## HITS:1 COG:SA0793 KEGG:ns NR:ns ## COG: SA0793 COG1020 # Protein_GI_number: 15926521 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Staphylococcus aureus N315 # 1 485 1 485 485 771 75.0 0 MADLINILNHFVQEQPEAVAVRHTNDELTYKQLDEESSKLAHLLQDSKKPMILYGHMSPY MIVGMIGAIKSGCGYVPIDTSVPKERVNMIIDKVQPEIIFNTSDETLEQTNAQVLKVSDI QDSQYPIVFDSQMKQNDVVYTIFTSGSTGEPKGVQIEYASLNEFAEWMVSLNKTGTGKEW LNQAPFSFDLSVMAIYPCLTSGGTLNLVDKDMIKKPKLLNEMLVQTPMNVWVSTPSFIEM CLLLPNLNEQQYNSLKQFFFCGEILPHKTAKVLVERFPNSMIYNTYGPTEATVAVTSIQI TEEILNQYNPLPVGVARPGTRLFATEEGELVIEGQSVSLGYLKNEEKTAAVFNFEDGVRT YHTGDKAKIEDGLWFIQGRIDFQIKLNGYRMELEEIETQLRQSKHVREAVVVPVYKNGKV VHLIGAVVPTESVEDNLAMTTQIKHELKSRLPEYMIPRKFEWMERLPLTLNGKLDRKKIA EVVNG >gi|224999907|gb|ACJC01000093.1| GENE 6 4791 - 6005 1083 404 aa, chain + ## HITS:1 COG:SA0794 KEGG:ns NR:ns ## COG: SA0794 COG1696 # Protein_GI_number: 15926522 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Staphylococcus aureus N315 # 1 404 1 404 404 628 86.0 1e-180 MIPYGTFTFFLIAFIVLIPVIILGFLGKRSYIYNGISTAIMIVIIFASDKHNLLGQKYLS AQLFCFIIYVIWQVALIMYYYQSRQRKNTFTKFVTIMVLSILPLAIVKILQSSWLGGHQI HFHESKLIEFVGFLGISYVTFKSVQLIMEIRDGSIKEIKVGKLIQFISFFPTISSGPIDR YKRYVKDDKKVPSGAEYRELAIKAIHMIMLGFLYKYIIAYLIQTYAVNPLQLNLHGFTHM WLYMYAYSLYLFFDFAGYSLFAIAVSYLYGIKTPPNFKQPFKAKNIKDFWNRWHMTLSFW FRDCIYMRSLFYMSRKKLLKSQFAMSNVAFFLNFFIMGVWHGLEVYYIVYGLYHAALFIG YGYYERWRKKHPPRWQNGFTTAISIIITFHFVTFGFLIFSGKFI >gi|224999907|gb|ACJC01000093.1| GENE 7 6023 - 6259 428 78 aa, chain + ## HITS:1 COG:SA0795 KEGG:ns NR:ns ## COG: SA0795 COG0236 # Protein_GI_number: 15926523 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Staphylococcus aureus N315 # 1 78 1 78 78 112 97.0 2e-25 MEFREQVLDLLAEVAENNIVKENPDVEIFEEGIIDSFQTVGLLLEIQNKLDIEVSIMDFD RDEWATPNKIVEALEELR >gi|224999907|gb|ACJC01000093.1| GENE 8 6256 - 7494 1086 412 aa, chain + ## HITS:1 COG:SA0796 KEGG:ns NR:ns ## COG: SA0796 COG3966 # Protein_GI_number: 15926524 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Staphylococcus aureus N315 # 1 393 1 391 391 612 78.0 1e-175 MKLKPFLPIIISGVIFIIFLFLPASWFTGLVTNKTLADNRISLTDQVLKGTLIQNKLFES NKYYPIYGSSELEKDDPFNPGIALNKQNASKETFLIGAGGSTDLINAVELAAQYDNLKGK KFTFIISPQWFTNHGLTNQNFDARMSQSQINQMFNQKNMPANLKKRYAQRLLQFPHAHNK SYLREQAKRPDDVSGNYISSFKENQLTKIEAIKSLFSFTKPPLAEVKPATREDASWDEMK HKAVDIGKANTQSNKYDIRDPYWKLIKQNKRKIKRDYEFNINSPEFQDLKLLVQTLHAAG ADVQYVSIPSNGRWYDHIGIKKDRREAVYKKIHSTVVDNGGKIYDLTNKDYEKYVISDAV HIGWKGWVYVDQQIARHMDGHAPKNHEVDYSKNKPPHKHHKGRQDDQHQGNK >gi|224999907|gb|ACJC01000093.1| GENE 9 7790 - 8032 394 80 aa, chain - ## HITS:1 COG:SA0797 KEGG:ns NR:ns ## COG: SA0797 COG0694 # Protein_GI_number: 15926525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Staphylococcus aureus N315 # 1 80 1 80 80 148 95.0 2e-36 MPTENPTMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKA GIERALHEEVPGVIEVEQVF >gi|224999907|gb|ACJC01000093.1| GENE 10 8132 - 8452 308 106 aa, chain + ## HITS:1 COG:SA0798 KEGG:ns NR:ns ## COG: SA0798 COG4837 # Protein_GI_number: 15926526 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 101 1 96 102 146 75.0 1e-35 MTKISVVVYGAEVVCASCVNAPTSIDTYQWLQALLLRKFPQHHFEFTYIDIRNDTENLTD HDMQFIERINEDELFYPLVTMNDEYVADGYIQYKQITRFIESYFTT >gi|224999907|gb|ACJC01000093.1| GENE 11 8646 - 9710 1053 354 aa, chain - ## HITS:1 COG:SA0799 KEGG:ns NR:ns ## COG: SA0799 COG1252 # Protein_GI_number: 15926527 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Staphylococcus aureus N315 # 1 354 1 354 354 635 84.0 0 MKNLVLLGGGYGNMRIMSRILPHSIPEGYHLTLIDRMPFHGLKPEFYALAAGTKSDKEVR IQFPDSSKINTVYGEINDIDLDEQMITVGNSKIDYDELIIGLGCEDKYHNVPGAEAYTHS IQTLSKSRETYHRISELPKGARVGIVGAGLSGIELASELRESRSDLEILLYDRGPRILRN FPEKLSKYISNWFSKHNVTVVPNSVIDKVEPGKIYNNGKPENIDLVVWTAGIQPVEIVRN LPIDMSTTGRVIINQYHQVPTYRNVYVVGDCANLPHAPSAQLAELQGEQIADVLKKQWNN EPLPDKMPEIKVQGFLGSLGDKQGFAYIMDRTVTGRLASILKSGVLWRYKYHNG >gi|224999907|gb|ACJC01000093.1| GENE 12 9997 - 10242 156 81 aa, chain + ## HITS:1 COG:SA0800 KEGG:ns NR:ns ## COG: SA0800 COG4844 # Protein_GI_number: 15926528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 74 1 74 78 110 67.0 6e-25 MFPLVEFCISNMAKGSDVVFEKLENDPNIDVLEYGCLQNCGLCASSLYALVDGDIVEGNT PDDLLKNIYQHIEDNDITNLL >gi|224999907|gb|ACJC01000093.1| GENE 13 10272 - 10631 555 119 aa, chain + ## HITS:1 COG:SA0801 KEGG:ns NR:ns ## COG: SA0801 COG0316 # Protein_GI_number: 15926529 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 119 1 119 119 205 89.0 1e-53 MPTVILTEAAAFEVKDMLKNNDMSDGYLKIKVNGGGCTGLTYGMSAEAEPGENDEILEYY GLKVLVDQNDAPVLNGTTIDFKQSLMGGGFQIDNPNAIASCGCGSSFKTAKVAGNPEQC >gi|224999907|gb|ACJC01000093.1| GENE 14 10835 - 12109 1489 424 aa, chain + ## HITS:1 COG:SA0802 KEGG:ns NR:ns ## COG: SA0802 COG1252 # Protein_GI_number: 15926530 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Staphylococcus aureus N315 # 23 424 1 402 402 697 85.0 0 MFIAFIYIVGWLKYYESLGELEMAQDRKKVLVLGAGYAGLQTVTKLQKELSADAAEITLI NKNEYHYESTWLHEASAGTINYEDLLYPVEKTVNKDKVNFVVAEVTKIDRNAKRVETDKG VYDFDILVVALGFVSETFGIDGMKEHAFQIENVLTSRKLSRHIEDKFANYAASKEKDDKD LSILVGGAGFTGIEFLGELTDRIPELCSKYGVDQSKVKLTCVEAAPKMLPMFSDDLVSYA VKYLEDRGVEFKIATPIVACNEKGFVVEVNGEKQQLEAGTSVWTAGVRGSHLMEESFEGV KRGRIINKQDLTIEGHNDIFVIGDCSAFIPAGEERPLPTTAQIAMQQGEHTASNIKRLLN GESTQDFQYVNRGTVCSLGTNDGVGIVYGRDIAGKKAAFLKKVIDTRAIYKLGGIGLAFK KGKF >gi|224999907|gb|ACJC01000093.1| GENE 15 12430 - 13911 1639 493 aa, chain + ## HITS:1 COG:SA0803 KEGG:ns NR:ns ## COG: SA0803 COG0260 # Protein_GI_number: 15926531 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Staphylococcus aureus N315 # 1 491 1 491 491 616 59.0 1e-176 MQFFINQDTPTSIETIVVGVPDHLNQLGEIKYHKTLIKERLETLKQYHVINSSIGKISST LIYIDEKPKRLLTVGLGNLKILSYQRLLKVWGQLFQYLKDVHVTDCELLLDTFKSKYGNI IEICQTLGLQSAQSIFEFDHYKSDKKPPYQGRVYIQTTEHNIETKINEGQQLGESINYAR ELSQMPPNILTPQYFAEEIKKHFEGSSVSVDIKDHRQIIDEGFGLIHAVGKGSNHGPRLI TVSYYGAEADEPPISLVGKGITYDSGGYSIKSKIGMQTMKYDMCGAANVIGMVDAISKQK LPVNIVGVIASAENMIGESSMKPDDVFTALNGETVEMLNSDAEGRMVLGDAVFYATQFKP QLILDFATLTGAAIVALGDDKAAAFQSHAENELKNLLTVARHVDEKVFELPITETERHLI KQSDVADLVNHTNGQGKALFAAAFISHFSGDIPHIHFDIAGPATIKSATYKGPKGPTGYM IPTVVEWLQQKYK >gi|224999907|gb|ACJC01000093.1| GENE 16 13985 - 14167 118 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTTFNRHKQSMIINMTAITTAFIIPPHPLSLYRTKVFIKYILARHIFNVNVKKDSTIIYI >gi|224999907|gb|ACJC01000093.1| GENE 17 14097 - 15413 1467 438 aa, chain + ## HITS:1 COG:SA0804 KEGG:ns NR:ns ## COG: SA0804 COG2056 # Protein_GI_number: 15926532 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 1 438 1 438 438 682 87.0 0 MINAVVIAVILMIILCLCRLNVVISLFISALVGGLISGMNLEKVINVFGKNIVDGAEVAL SYALLGGFAALISYSGITDYLVGKIIASIHAENSRLSRVKVKIIIIIALLAMSIMSQNLI PVHIAFIPIVIPPLVSLFNDLRIDRRLIALVIGFGLCFPYVLLPYGFGQIFHQIIQSGFQ KANHPIEMNMIWKAMLIPSMGYVVGLILGFIVYRKPRVYEQRNVNDRETISELKPYVLIV TVIAILATFLVQTFTDSMIFGALAGVLVFFVSRAYRWYELDEQFVDGVKLMAYIGVVILT ANGFAGVMNATGDIDSLVKSLTGLTGDHKLISIIVMYLIGLIVTLGIGSSFATIPIIASL FIPFGVSIGLDTMALIALIGTASALGDSGSPASDSTLGPTAGLNMDGQHDHIRDTCIPNF LFYNVPLMVFGTIAAMVL >gi|224999907|gb|ACJC01000093.1| GENE 18 15436 - 15810 522 124 aa, chain + ## HITS:1 COG:SA0805 KEGG:ns NR:ns ## COG: SA0805 COG2050 # Protein_GI_number: 15926533 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Staphylococcus aureus N315 # 1 124 1 124 124 187 72.0 4e-48 MTNLLETFEMKIEQKEDGKVVVSMPVTDKVKQPFGYLHGGASLALGETACSIGAAHLIDT QQFIPLGLEMNANHIRSTRQGHVRAFASLIHQGKTTQVWNIDIKDDHDQLISVMRGTIAI KPIQ >gi|224999907|gb|ACJC01000093.1| GENE 19 15869 - 17023 973 384 aa, chain - ## HITS:1 COG:no KEGG:SERP0531 NR:ns ## KEGG: SERP0531 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 384 1 384 384 780 99.0 0 MHWTIIGGGLQGTTIALKLKNEGLKNEELTIIDPYSSLCERFNIYTQRISMPYLRSPFVH HIHPKPFHLKQYARYHQYTSAYYGPYKRPQRDMFMHHVHDLIHQFKLNDCHIQGKVEAIN KSRGKWCIKLSTGDKMVTDCVVIANGYTQTPFIPEIFRNKANVKHIIADNYHASLDKDTQ HVVGSGISAAHITLKLLNEHNHQLVHLWMNKDIEIHDFDADPGWLGPKKMNHLASISSSD ARMKLIEDERHSGSMPMELFLRLKKYVQSGRLVIHMSQIDDVTESYIIAAGKYFEYKHIL LATGFYNQLLTQPLIKNLIQNEQAPLNHSGYPSLSNELEWLNQLFVAGGLADLELGPFAR NIMGGKESAERISKAYKRLNKKIS Prediction of potential genes in microbial genomes Time: Sun May 29 07:37:16 2011 Seq name: gi|224999906|gb|ACJC01000094.1| Staphylococcus epidermidis W23144 contig00134, whole genome shotgun sequence Length of sequence - 17872 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 10, operones - 2 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 16/0.000 - CDS 79 - 435 375 ## COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit 2 1 Op 2 15/0.000 - CDS 413 - 706 353 ## COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit 3 1 Op 3 12/0.000 - CDS 706 - 1185 306 ## COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit 4 1 Op 4 21/0.000 - CDS 1187 - 2683 1496 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 5 1 Op 5 16/0.000 - CDS 2670 - 3005 325 ## COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit 6 1 Op 6 7/0.000 - CDS 3017 - 3445 463 ## COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit 7 1 Op 7 . - CDS 3438 - 5843 1925 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit - Prom 5873 - 5932 8.9 - Term 5951 - 5995 1.2 8 2 Tu 1 . - CDS 6037 - 6417 437 ## SERP0539 kinase-associated protein B - Prom 6451 - 6510 5.3 + Prom 6397 - 6456 6.2 9 3 Tu 1 . + CDS 6483 - 7076 872 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family + Term 7172 - 7211 6.4 + Prom 7264 - 7323 5.7 10 4 Tu 1 . + CDS 7481 - 7861 209 ## PROTEIN SUPPORTED gi|30264941|ref|NP_847318.1| general stress protein 13 + Term 7917 - 7976 11.0 + Prom 8072 - 8131 16.3 11 5 Tu 1 . + CDS 8183 - 9310 1330 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family + Term 9340 - 9378 7.1 + Prom 9549 - 9608 7.3 12 6 Tu 1 2/0.500 + CDS 9643 - 10833 1499 ## COG4992 Ornithine/acetylornithine aminotransferase + Prom 10844 - 10903 7.0 13 7 Tu 1 . + CDS 10942 - 12186 1553 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase 14 8 Tu 1 . - CDS 12378 - 13427 1081 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 13486 - 13545 10.1 15 9 Op 1 16/0.000 - CDS 13577 - 14968 1354 ## COG0165 Argininosuccinate lyase 16 9 Op 2 . - CDS 14958 - 16163 1403 ## COG0137 Argininosuccinate synthase - Prom 16364 - 16423 9.2 + Prom 16323 - 16382 8.9 17 10 Tu 1 . + CDS 16510 - 17841 1620 ## COG0166 Glucose-6-phosphate isomerase Predicted protein(s) >gi|224999906|gb|ACJC01000094.1| GENE 1 79 - 435 375 118 aa, chain - ## HITS:1 COG:SA0807 KEGG:ns NR:ns ## COG: SA0807 COG1320 # Protein_GI_number: 15926535 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhG subunit # Organism: Staphylococcus aureus N315 # 1 118 1 118 118 153 76.0 6e-38 MIATIVTSVSIIFVLLGALISAFAATGLIRLRDVYSRAHAAGKAATLGAMFLLFGAFLYF IGTEGYVNMQLIIGIIFVFITGPLSSHLIMKAAYNIKTPYTKDTKIDEIKEDMKHTKL >gi|224999906|gb|ACJC01000094.1| GENE 2 413 - 706 353 97 aa, chain - ## HITS:1 COG:SA0808 KEGG:ns NR:ns ## COG: SA0808 COG2212 # Protein_GI_number: 15926536 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhF subunit # Organism: Staphylococcus aureus N315 # 17 94 17 94 97 99 91.0 1e-21 MPFKIFIITALIIVVLSMLAMLIRVILGPSLADRVVALDAIGLQLMAVIALFSILLNIKY MLVVILMVGILAFLGTAVFSKFMDEGKVIKHDSNDRH >gi|224999906|gb|ACJC01000094.1| GENE 3 706 - 1185 306 159 aa, chain - ## HITS:1 COG:SA0809 KEGG:ns NR:ns ## COG: SA0809 COG1863 # Protein_GI_number: 15926537 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhE subunit # Organism: Staphylococcus aureus N315 # 1 158 1 158 159 210 73.0 9e-55 MAIQFVINLLVSVIWLLVTNSYTLNNFVLGFILGLFLVYLLHRVLPGQFYLVRIYRIVML IITFLTELIKANFGVLKIILKPRIENKPGFFVYETELESDWQLVLLSNLITLTPGTVVLG ISDDRKKIYIHSIDFSTKEEEIQSIKSSLEKVVRKVGKK >gi|224999906|gb|ACJC01000094.1| GENE 4 1187 - 2683 1496 498 aa, chain - ## HITS:1 COG:SA0810 KEGG:ns NR:ns ## COG: SA0810 COG0651 # Protein_GI_number: 15926538 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Staphylococcus aureus N315 # 1 498 1 498 498 631 81.0 1e-180 MIESNLLVFTLVIPILTAILLIFIGKRPIIKRYVALIGTLLTLVVALINLKNVLRDGPIK VELGSWKAPYSIVFVVDIFSALLIITSIIITILVILYSYRSIGLDRERHYYYFSIMFMLI GIIGSFTTGDIFNLFVFFEVFLMSSYCLLVIGTTKIQLQETIKYILVNVVSSSFFVMGVA VLYSVVGTLNLAHISERLSQLSVHDSGLVNIVFILFIFVFATKAGVFPMYVWLPGAYYAP PVAIITFFGALLTKVGVYAIARTLSLFFNNTVSFSHYVILFLALLTIIFGCVGAIAYYDT KKIILYNIMIAVGVILVGVAMMNESGMTGAIYYTLHDMLVKASLFLLIGVMYKITKTTDL RHFGGLIKGYPILGWTFFIASLSLAGIPPFSGFYGKFYIVRATFEKGFYLSGIIVLLSSL IVLYSVIRIFLRGFFGEVEGYTLSKKVNVKYLTTIAVASTVITVVFGLSADALFPIIKDG AETFVDPSQYIHSVLGGK >gi|224999906|gb|ACJC01000094.1| GENE 5 2670 - 3005 325 111 aa, chain - ## HITS:1 COG:SA0811 KEGG:ns NR:ns ## COG: SA0811 COG1006 # Protein_GI_number: 15926539 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhC subunit # Organism: Staphylococcus aureus N315 # 1 109 5 113 113 169 91.0 8e-43 MIFVSGILTSISVYLVLSKSLIRIIMGTTLLTHAANLFLITMGGLKHGTVPIFEKGTSSY VDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVELMKGAPEDDRE >gi|224999906|gb|ACJC01000094.1| GENE 6 3017 - 3445 463 142 aa, chain - ## HITS:1 COG:SA0812 KEGG:ns NR:ns ## COG: SA0812 COG2111 # Protein_GI_number: 15926540 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhB subunit # Organism: Staphylococcus aureus N315 # 1 142 1 142 142 186 83.0 9e-48 MNRQQNNLMFQYAAVIIFFMVIVFGFSLFLAGHYTPGGGFVGGLLFASALLVITIAYDVK TMRKIFPLDFKILIGIGLLFCVGTPLTSWFMSKNFFTHVTFDIPLPLLEPMHMTTAMFFD FGVLCAVVGTIMTIIISIGENE >gi|224999906|gb|ACJC01000094.1| GENE 7 3438 - 5843 1925 801 aa, chain - ## HITS:1 COG:SA0813_1 KEGG:ns NR:ns ## COG: SA0813_1 COG1009 # Protein_GI_number: 15926541 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Staphylococcus aureus N315 # 1 643 1 643 643 859 78.0 0 MSLLHIAVLLPLIFALIIPFLYRFVKRIHLGWFVLPVPIVLFIYFISLISMTMSGNNVMK NLNWMPHIGMNFNLYVDGLGLLFSLLITGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMG AMLGVVLSDNFIILYLFWELTSFSSFLLISFWREKKASIYGAQKSLIITVLGGLSMLGGI ILLSLATDTFSIQTMISKASDIQNSPFFILAMILFMIGAFTKSAQVPFYIWLPDAMEAPT PVSAYLHSATMVKAGLYLIARITPIFAISEGWVWTITIVGLITLFWASLNATKQQDLKGI LAFSTVSQLGMIMSMLGIGAVSYHYQGANSQLYVAGFVAAIFHLINHATFKGALFMITGG IDHSTGTRDVKKLGGLLTIMPISFTLTVITTLSMAGVPPFNGFLSKEKFLEAMINVTHLN LMSLNTLGILLPIIAIIGSIFTFVYSIKFILHIFFGSYKPEALPKQAHESSMLMLISPII LTSLVIVFGLFPGILTQSIIEPASEAVSQTSNITAEFHLFHGITPAFLSTIGIYIIGILL LISFSYWIRLLQAHPYQLTLNHWYDTSSRRIPGYSENITNSYVTGFSRNNLVIILGILIA LTFVTVISVPFSIDFKNVSHLRVFEGATVLFLLIASTFIIFAKSRLFSIIMLSAVGYAIS VLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKPTFKLTNAVISIGVGLSV IILGLIGYGNRHFESITKFYQEHVFDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLGV YTMIKLRLKQKNQSSEVNDHE >gi|224999906|gb|ACJC01000094.1| GENE 8 6037 - 6417 437 126 aa, chain - ## HITS:1 COG:no KEGG:SERP0539 NR:ns ## KEGG: SERP0539 # Name: kapB # Def: kinase-associated protein B # Organism: S.epidermidis_RP62A # Pathway: Two-component system [PATH:ser02020] # 1 126 1 126 126 209 94.0 2e-53 MLYRFSHKTGVYGVSIKEETGNQILVQVEQVIKHPKQGDLHHPNETEGVFFHERKALSHF EKRYATPSQLREFNVEVIPYEDSLQHAITHLENQLKKEETTYSRLSLNNLNRLKEDYAIQ YKRHFD >gi|224999906|gb|ACJC01000094.1| GENE 9 6483 - 7076 872 197 aa, chain + ## HITS:1 COG:SA0815 KEGG:ns NR:ns ## COG: SA0815 COG0652 # Protein_GI_number: 15926543 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Staphylococcus aureus N315 # 1 197 1 197 197 357 89.0 5e-99 MTNYPQLNKEIQDNEIKVVMHTNKGDMTFKLFPDIAPKTVENFVTHSKNKYYDGVTFHRV INDFMVQGGDPTATGMGGESIYGSAFEDEFSLEAFNLYGALSMANAGPNTNGSQFFIVQM KEVPENMLSQLADGGWPQPIVEAYGEKGGTPWLDQKHTVFGQLIEGESTLEDIANTKVGA QDKPVYDVVIESIDVEE >gi|224999906|gb|ACJC01000094.1| GENE 10 7481 - 7861 209 126 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|30264941|ref|NP_847318.1| general stress protein 13 [Bacillus anthracis str. Ames] # 1 120 1 111 114 85 41 3e-16 MNHHYKVGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQVVKA KILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLVEIRETEKYGFQTLKERLPVWIKQSK RAIHND >gi|224999906|gb|ACJC01000094.1| GENE 11 8183 - 9310 1330 375 aa, chain + ## HITS:1 COG:SA0817 KEGG:ns NR:ns ## COG: SA0817 COG1902 # Protein_GI_number: 15926545 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Staphylococcus aureus N315 # 1 375 1 375 375 634 81.0 0 MNNKYEPLFKSLTLPNGVEVRNRFVLAPLTHTSSNDDGTISDIELPYIEKRSKDVGIAIN AASNVNDVGKAFPGQPSVAHDSDIEGLKELAQVMKKNGAKAIVQIHHGGAQALPELTPDG DVVAPSAISLKSFGQQEEHDAREMTAEEIEQTIRDFGEATRRAIEAGFDGVEIHGANHYL IHQFVSPYYNRRNDVWADNYKFPVAVIDEVIKAKKAHANDDFIIGYRLSPEEAESPGISM EITEELIHQIANKPLDYIHVSLMDVNSVTREGKYKGENRLKLIHQWINGRMPLIGIGSVF TAEDALNAVENIGVEFVALGREILLDYDFVAKIKEGREDEIINAFDPNREDQHYLTPNLW EQFNQGFYPLPRKDK >gi|224999906|gb|ACJC01000094.1| GENE 12 9643 - 10833 1499 396 aa, chain + ## HITS:1 COG:SA0818 KEGG:ns NR:ns ## COG: SA0818 COG4992 # Protein_GI_number: 15926546 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Staphylococcus aureus N315 # 1 395 1 395 396 763 91.0 0 MTQSEKIINLTNHYGAHNYVPLPIVISEAEGVWVKDPEGNTYMDMLSAYSAVNQGHRHPR IIQALKDQADKVTLVSRAFHSDNLGQWYEKICKLAGKDKALPMNTGAEAVETTLKAARRW AYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVEFGDVNQLK AAINKNTAAILVEPIQGEAGINVPPEGYLKTIRELCDEHQILFIADEIQAGLGRSGKLFA TDWDHVKPDVYILGKALGGGVFPISVVLADNEVLDVFTPGSHGSTFGGNPLACAVSIAAI DVIIDEDLPGRSLELGEYFKSELKKIEHPSIKEVRGRGLFIGIELHESARPYCEALKEQG LLCKETHDTVIRFAPPLVITKEELDMALEKIKSVFA >gi|224999906|gb|ACJC01000094.1| GENE 13 10942 - 12186 1553 414 aa, chain + ## HITS:1 COG:SA0819 KEGG:ns NR:ns ## COG: SA0819 COG0334 # Protein_GI_number: 15926547 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 414 1 414 414 822 95.0 0 MTENNNLVTSTQGIIKEALHKLGFDDGMYDLIKEPIRFLQVRIPVRMDDGTVKTFTGYRA QHNDAVGPTKGGVRFHPEVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHE VERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVL GGSQGRDRSTALGVVIAIEQAAKRRGMDIKDAKIVIQGFGNAGSFLAKFLYDLGAKVVGI SDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEDTISNKELFELDCDILVPAAISNQITE DNAHDIKASIVVEAANGPTTPEATRILTERDILLVPDVLASAGGVTVSYFEWVQNNQGYY WTEEEVNDKLREKLVTAFDTIYELSQNRKIDMRLAAYIVGIKRTAEAARYRGWA >gi|224999906|gb|ACJC01000094.1| GENE 14 12378 - 13427 1081 349 aa, chain - ## HITS:1 COG:SA0820 KEGG:ns NR:ns ## COG: SA0820 COG0584 # Protein_GI_number: 15926548 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Staphylococcus aureus N315 # 81 344 44 307 309 377 72.0 1e-104 MFKSKKIIISTLSSVTLGLASLSSPTIAETSNHSSSPNQSEKSIQQHTNIPSNMNQSSAK TFKRQAESDSVSGKTNDTHNHWAKNLTGEKFTTIAHRGASGYAPEHTFEAYDKSHNELGA SYIEIDLQRTKDGHLVAMHDEKVNRTTNGHGRVDQFTLKELKQLDAGSWFNRKHPEYAKN KYKNAKVPTLDEILNRYGKNANYYIETKSPDVYPGMEKQLLDTLDKHDLLTQKSLKHGHV MIQSFSGSSLEKVHHMNANIPLIRLMNKFELKKASNQDLKNIKSYAIGVGPEYTDLNIKN TRHLKNLGFLVHPYTVDDENQMRNLNQYGVDGVFTNYADRYKKVSETQQ >gi|224999906|gb|ACJC01000094.1| GENE 15 13577 - 14968 1354 463 aa, chain - ## HITS:1 COG:SA0821 KEGG:ns NR:ns ## COG: SA0821 COG0165 # Protein_GI_number: 15926549 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Staphylococcus aureus N315 # 1 457 1 457 459 746 81.0 0 MSNKAWGGRFETQPEEWVDDFNASIDFDKNLIKQDVQGSIAHATMLAKQHIITDDEAQSI INELKNIQRDFEEGQLEFKASLEDIHLNIEHELIQRIGEAGGKLHTGRSRNDQVATDMHL YTKEQVQYIIELITSFQQTIVQLADQHVDTIMPGYTHLQRAQPISFAHHIMTYFWMLERD KGRFMDSLKRIDVSPLGAAALSGTTHPIDRHLTQELLGFANLYENSLDAVSDRDYIVETL HHISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRT TGHLMSMLVTLKGLPLAYNKDMQEDKEGLFDAVHTLKGSLRIFEGMVASMKVNSNRLNQT VKNDFSNATELADYLVSKNIPFRTAHEIVGKIVLNCIHKGIYLLDVPLSEYQEHHENIEE DIYDYLTPENCLKRRQSYGSTGQESVKHQLKVAKALLKDHGSK >gi|224999906|gb|ACJC01000094.1| GENE 16 14958 - 16163 1403 401 aa, chain - ## HITS:1 COG:SA0822 KEGG:ns NR:ns ## COG: SA0822 COG0137 # Protein_GI_number: 15926550 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Staphylococcus aureus N315 # 1 401 1 401 401 774 93.0 0 MKDKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDVVYQKALDMGAVECHII DATKEFSDDYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSIGIAHGCTGKG NDQVRFEVAIKALNPKLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWG RANECGILEDPYAAPPEDAFDLTTPLEETPDEADEIILTFKQGIPVQVDGKEYQLDDLIL YLNQLAGKHGIGRIDHVENRMVGIKSREIYETPGAEVILKAHKALETITLTKDVAHFKPV IEKQFSEQIYNGLWFSPLTDSLKLFIDSTQQYVEGDVRIKLFKGNAIVNGRQSPYTLYDE KLATYTKEDAFNQESAVGFIHIYGLPTQVNALLHGGYSNEQ >gi|224999906|gb|ACJC01000094.1| GENE 17 16510 - 17841 1620 443 aa, chain + ## HITS:1 COG:SA0823 KEGG:ns NR:ns ## COG: SA0823 COG0166 # Protein_GI_number: 15926551 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Staphylococcus aureus N315 # 1 443 1 443 443 808 90.0 0 MTHIQLDYGKTLEFFDKHELDQQKDIVKTIHQTIHKGTGAGNDFLGWLDLPVDYDKEEFS RIVEASKRIKSNSDVLVVIGIGGSYLGARAAIEMLTSSFRTNTEYPEIVFVGNHLSSSYT KELLDYLQGKDFSVNVISKSGTTTEPAVAFRLFKQLVEEKYGKDESKKRIFATTDKSKGA LKQLADNEGYETFVVPDDVGGRYSVLTAVGLLPIATAGINIESIMIGAAKAREELSSDDL DQNIAYQYATIRNILYSKGYTTEMLINYEPSMQYFNEWWKQLYGESEGKDFKGIYPSSAN YTTDLHSLGQYVQEGRRFLFETVVKVNHPKHDIKIEEDADDLDGLNYLAGKSIDEVNTKA FEGTLLAHTDGGVPNIVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYK QNMFALLGKPGFEDKKKELENRL Prediction of potential genes in microbial genomes Time: Sun May 29 07:37:29 2011 Seq name: gi|224999905|gb|ACJC01000095.1| Staphylococcus epidermidis W23144 contig00135, whole genome shotgun sequence Length of sequence - 34326 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 15, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 264 - 323 6.8 1 1 Op 1 2/0.667 + CDS 423 - 929 209 ## COG0398 Uncharacterized conserved protein 2 1 Op 2 2/0.667 + CDS 933 - 1454 409 ## COG0681 Signal peptidase I 3 1 Op 3 1/1.000 + CDS 1473 - 2048 607 ## COG0681 Signal peptidase I + Term 2064 - 2115 2.1 + Prom 2089 - 2148 5.8 4 2 Op 1 8/0.000 + CDS 2169 - 5639 3329 ## COG3857 ATP-dependent nuclease, subunit B 5 2 Op 2 2/0.667 + CDS 5636 - 9292 3039 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) + Term 9329 - 9373 0.6 + Prom 9404 - 9463 8.1 6 3 Tu 1 . + CDS 9491 - 10396 1023 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) + Term 10486 - 10530 1.2 + Prom 10667 - 10726 7.1 7 4 Tu 1 . + CDS 10751 - 11152 494 ## SERP0557 hypothetical protein + Term 11173 - 11220 2.3 - Term 11212 - 11258 12.4 8 5 Op 1 1/1.000 - CDS 11355 - 12671 1513 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases 9 5 Op 2 . - CDS 12749 - 13570 954 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 13656 - 13715 5.7 + Prom 13598 - 13657 4.5 10 6 Tu 1 . + CDS 13683 - 13991 525 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme + Term 13994 - 14053 12.1 + Prom 14184 - 14243 6.4 11 7 Tu 1 . + CDS 14374 - 16197 1591 ## COG1835 Predicted acyltransferases + Term 16211 - 16263 12.0 + Prom 16275 - 16334 5.5 12 8 Tu 1 . + CDS 16408 - 19017 1727 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 + Term 19049 - 19094 8.1 - Term 19036 - 19080 4.1 13 9 Tu 1 . - CDS 19196 - 19390 265 ## SERP0566 hypothetical protein - Prom 19492 - 19551 8.2 + Prom 19507 - 19566 8.1 14 10 Op 1 4/0.333 + CDS 19671 - 20612 1354 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III 15 10 Op 2 . + CDS 20624 - 21868 1701 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase + Term 21888 - 21949 8.3 - Term 21879 - 21933 2.1 16 11 Tu 1 . - CDS 21939 - 22310 251 ## SERP0569 hypothetical protein + Prom 22427 - 22486 5.5 17 12 Op 1 49/0.000 + CDS 22551 - 23477 1076 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 18 12 Op 2 44/0.000 + CDS 23477 - 24547 1065 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 19 12 Op 3 44/0.000 + CDS 24562 - 25641 617 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 20 12 Op 4 2/0.667 + CDS 25634 - 26575 708 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 21 12 Op 5 . + CDS 26599 - 28242 1702 ## COG4166 ABC-type oligopeptide transport system, periplasmic component + Term 28245 - 28299 14.0 - Term 28228 - 28289 13.8 22 13 Tu 1 . - CDS 28297 - 29286 925 ## COG0180 Tryptophanyl-tRNA synthetase - Prom 29355 - 29414 10.7 + Prom 29488 - 29547 8.8 23 14 Tu 1 . + CDS 29577 - 29972 482 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family + Term 30128 - 30165 6.2 + Prom 30191 - 30250 8.0 24 15 Op 1 3/0.333 + CDS 30326 - 31048 867 ## COG4862 Negative regulator of genetic competence, sporulation and motility + Term 31062 - 31090 1.0 + Prom 31054 - 31113 5.2 25 15 Op 2 7/0.000 + CDS 31143 - 32108 556 ## COG4469 Competence protein 26 15 Op 3 . + CDS 32172 - 33980 1938 ## COG1164 Oligoendopeptidase F + Term 33986 - 34037 1.3 Predicted protein(s) >gi|224999905|gb|ACJC01000095.1| GENE 1 423 - 929 209 168 aa, chain + ## HITS:1 COG:SA0824 KEGG:ns NR:ns ## COG: SA0824 COG0398 # Protein_GI_number: 15926552 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 168 24 191 191 198 67.0 3e-51 MLYLRAIVPVLPLTLYVVLLIHAYGLFPGIIISWLGIVSGTFTVFLICKKFVNTIRMKKL KSRKSVQRLISFIDRQGLIPLFILLCFPFTPNTLINIIASLSHIKIKYYFLVLVISKLIS ITILGVMGKEIFTIFTNPLRALIMIVLLVVLWFISKKVEKYFMGSTKE >gi|224999905|gb|ACJC01000095.1| GENE 2 933 - 1454 409 173 aa, chain + ## HITS:1 COG:SA0825 KEGG:ns NR:ns ## COG: SA0825 COG0681 # Protein_GI_number: 15926553 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 173 1 173 174 178 58.0 4e-45 MKQLIKYLISFTFAIIIVIFIQSFIIVGAVISNNSMTPTLQTGDRVIVNKIKVTFDLIQR GDIIMYRHNNKTYFSRIIGKPGESVSIKSQRIYIDDRQVNEPYMKDRHIKDITLREIKNS DGDTIPPGAYFVLNDNNNKHSDSRTYGLIDKKEIIGDVSLKYYPFKEFNYQFK >gi|224999905|gb|ACJC01000095.1| GENE 3 1473 - 2048 607 191 aa, chain + ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 191 1 191 191 300 78.0 2e-81 MKKEILEWVVAIAVAIALIALITKFVGKSYSIKGDSMDPTLKDGERVVVNIIGYKLGGVE KGNVIVFHANKKDDYVKRVIGTPGDSVEYKNDTLYVNGKKQSEPYLNYNEKRKQTEYITG SFKTKNLPNANPQSNVIPKGKYLVLGDNREVSKDSRSFGLIDKDQIVGKVSLRYWPFSEF KSNFNPNNTKN >gi|224999905|gb|ACJC01000095.1| GENE 4 2169 - 5639 3329 1156 aa, chain + ## HITS:1 COG:SA0827 KEGG:ns NR:ns ## COG: SA0827 COG3857 # Protein_GI_number: 15926555 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Staphylococcus aureus N315 # 1 1154 1 1157 1157 1664 71.0 0 MEFNTYIGRAGTGKSTAMLTQIKNKMKQDPLGDPIVLIAPTQSTFQLEQAFVNDSELHGS LRTEVLHFERLSHRVFQEVGGLTEQRLSKAALEMMIFHIVQQHESDLKLYGSQAQYYGLS EKLAEQIQDFKKYNVTPEHLDQLIDNHSMQTRTKHKLEDISLIYKQLESRMNGEFITTED SLQQFIEILSQSQWIKKAEVFIDGFHNFSTLEYRIIEALVQHAKQVTVLLTTDGSHHPFS LFRKSSEVLSHLEDIANRLNINLNKTYFNTFYRYKNDDLKNLENGFDALQFTPKHHQNHV EIFESSSMREEINEVARRILKDVREADYKFRDIAILYRDESYAYLFESILPSYDIPFNID TKKSMTHHPIMEMLRSLLEVIRSNWHINAMLRLFKTNVLTSQFKRSSYLIDLLENFVLER GIYGKRWLDEDIFSIDQFSRMGRKSHQLTEEHQALYKEVIKLKTNVIDKVLYFEQAMNEA HTVKDYATSFYESLEYFELPSQLMTQRDELELAGLTEKAEEIDQVWNGLIQILDDLVTVF DDQEMTLQQFLDVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHIYMVGMNDGILP QTVSSSSLITDEEKKYVEDNAHVELSPTSDILQMDEAFVCYIAMTRSQQSVTFSYSLMGN SGDEKEISPFLTQIKELFYDLEITNLQDLHEAQPLLMMQHSHQTKIQLFEYLRGWLDHED IDIRWLDAYIAIRDDDQLNQGLDYLTTSLTYDNETVQLNETLSQQLYGKTINASVSRFEG YQQCPFKHYASHGLRLNERTKYELQNFDLGDIFHSVLKYISDRIYGNFKNLDTKNIQSLT KEALELILPKVQFNLLNSSAYYKYLSKKIGSIVETTLKALKYQGDYSKFVPQRFETGFRK SPKNKDELVAQPLITDQGIPINIRGQIDRIDTYTKGDHSYVNIIDYKSSESSATLDLTKV YYGLQMQMMTYMDIVLQNKERLGLTDIVKPGGLLYFHVHEPRIKFKSWADIDEDQFQKDY IKNFKMSGLLNRDQEVLDAFDIRLEPKYNSDIVPIALTAKGAINQRSSKVADENIIYQLI EHNKKNFIETATHIMDGHTEVAPLKYKQVLPCQFCNYKSVCHVDGLIDSKRYRTVDESIK PLDLIQQLRTEGGEKT >gi|224999905|gb|ACJC01000095.1| GENE 5 5636 - 9292 3039 1218 aa, chain + ## HITS:1 COG:SA0828 KEGG:ns NR:ns ## COG: SA0828 COG1074 # Protein_GI_number: 15926556 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Staphylococcus aureus N315 # 2 1216 3 1217 1217 1769 76.0 0 MIPTKPQDVIWTDAQWQSIYAKGQDILVAAAAGSGKTAVLVERIIQRILRDDVDVDRLLV VTFTNLSAREMKHRVDIRIQEASFKDPNNEHLKNQRIKIHQAQISTLHSFCLKLIQQHYD VLDIDPHFRTSSEAENILLLEQTIDDVLEQHYDKLDPHFIELTEQLSSDRNDDQFRSIIK QLYFFSIANPQPFEWLNQLAQPYKEENKQQQLMQLINDLAMIFMKAGYEELQKSYDLFSM MESVDKQLEVVETERMFITKAIEGKVLNTDVITQHEFMSRFPAINSKIKEANEGMEDALN EAKQHYDKYKSLVMKVKNDYFSRNADDLKRDMQQLAPRVAYLAQIVQDVIHSFGVQKRSR NILDFSDYEHFALCILTNEDGSPSRIAETYREHFKEILVDEYQDTNRVQEKILSCIKTGE EHDGNLFMVGDVKQSIYKFRQADPSLFIEKYNRFSSSGTDSGLRIDLSQNFRSRQEVLST TNYLFKHMMDEQVGEISYDDAAQLYFGAPYDKVSHPVQLRALVEASSENSDLTGSEQEAN YIVEQVKDIINHQNVYDMKTGQYRKATYKDIVILERSFGQARNLQQAFKNNDIPFHVNSK EGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEEELAKIRVVSPHDDYFYQS IKNYMIDEKADSRLVDKLNRFIQDIQKYQNYSQSQPVYQLIDKFYNDHFVIQYFSGLIGG KGRRANLYGLFNKAVEFENSSFRGLFQFIRFIDELIDRKKDFGEENVVGPNDNVVRMMTI HSSKGLEFPFVIYSGLSKKFNKGDLNAPVILNQQYGLGMDYFDVNKDMAFPSLASVAYRA INEKELISEEMRLVYVALTRAKEQLILVGRVKDEKSLIKYEQLAVSDTHIAVNERLTATN PFVLIYGILAKHQSASLPNDQRFERDIDQLNSEVKPRVSIVIDHYEDVSTEEVVNDNEIR TIEELKAINTGNEDVKIKIHQQLSYDYPFKVNTMKPSKQSVSELKRQLETEESNTNYDRV RQYRIGVASYERPKFLTQTKKRKANEIGTLMHTVMQHLPFREQRLTKDELLQYIDGLIDK QLIDEDAKEDIRIDEIMHFIDGPLYMEIAQADNVYTELPFVVNQIKVDELTSEDEDVSII QGMIDLIYESDGQFYFVDYKTDAFNRRKGMSDEEIGNQLKEKYQIQMTYYRNTLETILKR PVKGYLYFFKFGTLEIDN >gi|224999905|gb|ACJC01000095.1| GENE 6 9491 - 10396 1023 301 aa, chain + ## HITS:1 COG:SA0829 KEGG:ns NR:ns ## COG: SA0829 COG0179 # Protein_GI_number: 15926557 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Staphylococcus aureus N315 # 1 300 1 300 300 526 87.0 1e-149 MKFLSFKHNDRTSYGVKVKREDAVWDLPMVFAEFGDKDFNPKTLIAGLQQNQTLDFQEQV RKAVVAAEESGRDEEFKFLFTDIDFLPPVTPPNNVIAFGRNYEDHASELNHEVDSLYVFT KAASSLTGDEATIPNHKDITEQLDYEGELGIVIGKSGEKIPRGLALDYIYGYTIINDITD RTAQSSHDQAFLSKSLTGACPMGPYIVTKDELPTPENVNIVTKVNNEIRQDGNTGEMILK IDELIEKISKYVALHPGDIIATGTPAGVGAGLQPPQFLQPGDEVKVTIDNIGTLTTYISK N >gi|224999905|gb|ACJC01000095.1| GENE 7 10751 - 11152 494 133 aa, chain + ## HITS:1 COG:no KEGG:SERP0557 NR:ns ## KEGG: SERP0557 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 133 1 133 133 215 100.0 4e-55 MLHVHILSWVLAIILFIATYLNYSKTQGASPYYKPLHMALRLFMLLTLISGFWELIEEFM AASNGEGGNHMLLTLKMLCGLAVIAFMEISIAKRKKQQTSHKFFWITIILIIITMAIGVI LPWGPISKIFGIS >gi|224999905|gb|ACJC01000095.1| GENE 8 11355 - 12671 1513 438 aa, chain - ## HITS:1 COG:SA0831 KEGG:ns NR:ns ## COG: SA0831 COG0446 # Protein_GI_number: 15926559 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Staphylococcus aureus N315 # 1 438 1 438 438 671 75.0 0 MNKIIIVGAVAGGATCASQIRRLDKESEIIVFEKDRDMSFANCALPYYIGNVIEDRRKVL AYTPDQFYDKKHITVKTYHEVIQINDKRQTVTVLNHQTNQTFEESYDTLILSPGASANRL NTHSDISFTVRNLEDTEAIDTFITNTKAQRALVVGAGYISLEILENLHHRGLDVTWIHRS TNINKLMDQDMNQPIIEEIKKRNITYRFNEEISQVNGHEVTFTSGKVENYDLIIEGVGTH PNSQFIKSSNVILDDKGYIPVNHNFQTNIPNIYALGDVITSHYRHVNLPAQVPLAWGAHR GASIIAEQLSGNSSIHFKGYLGNNIVKFFDYTLASVGIKPNELTNFNYDMVEVKQGAHAG YYPGNSPLHLRVYFEKDSRKLLRAAAVGKQGADKRIDVLSMAMMNHATVDDLTEFEVAYA PPYSHPKDLINLIGYKAQ >gi|224999905|gb|ACJC01000095.1| GENE 9 12749 - 13570 954 273 aa, chain - ## HITS:1 COG:SA0832 KEGG:ns NR:ns ## COG: SA0832 COG0561 # Protein_GI_number: 15926560 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 273 1 273 274 431 76.0 1e-120 MQPYLICLDLDGTLLNDNKEISPYTKQVLTELQQCGHYVMIATGRPYRASQMYYHELNMN TPVVNFNGAFVHHPKANDFEVIHEVLDVEISKNIITALQQSHITNIIAEVKDYVFINSYD PRLFEGFSMGNPKIQTGNLLENLNEAPTSLLVEAEEENIPEIKDMLTHFYAENIEHRRWG APFPVIEIVKRGINKARGIKHVQNYLNIADDHIIAFGDEDNDIEMIKYATHGIAMDNGLK DLKEIANNITYSNNEDGIGRYLNDFFNLKMRYY >gi|224999905|gb|ACJC01000095.1| GENE 10 13683 - 13991 525 102 aa, chain + ## HITS:1 COG:SA0833 KEGG:ns NR:ns ## COG: SA0833 COG2151 # Protein_GI_number: 15926561 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Staphylococcus aureus N315 # 1 101 1 101 102 166 90.0 7e-42 MEEALKDSILGALEMVIDPELGIDIVNLGLVYKVDVDDEGLCTVEMTLTSMGCPLGPQII EQVKSVLAEIPEISDTEVMIVWSPPWNKDMMSRYAKIALGIG >gi|224999905|gb|ACJC01000095.1| GENE 11 14374 - 16197 1591 607 aa, chain + ## HITS:1 COG:SA0834 KEGG:ns NR:ns ## COG: SA0834 COG1835 # Protein_GI_number: 15926563 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Staphylococcus aureus N315 # 13 607 11 604 604 803 67.0 0 MRKKLNNEYRSAKKMRYMPGLDGLRAIAVIGIIIYHLNKQWLTGGFLGVDTFFVISGYLI TSLLLKEYEDTGTINLKNFWIRRIKRLLPAVFVLIVVVGIATLLFHPEHIVRVKHDMIAA IFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYLFFPAILLLFMAIVKKKKNVIL MFWIISLVSLLMMVVISQPHLNHSRVYFGTDTRLQTLLLGVLLAFIWPPFKLNPNPPKGL KTVINSAGIIGLTFLILLFFTVSDESDWIYNGGFYLISTMTLLIIASVVHPTTILAKLLG NPVFVYIGKRSYSLYLWHFPIMSFVHSYFIDGQMPMYVYILDIILTVLFAELSFKYVETP LRKQGFKAFAIKKTYKPQFIRTIVTLVILLPTIFILIGVFDKFGKDTISNKAQTINTDEA DQYLIHMIPIDNISLTSDGKTKANTKDNDVYTQIKPLLIGDSVMVDIGEQFKTKVPKAKI DGKVGRQLYQAESLVNQQYKQYRKPTDQVILELGTNGDFTKEQLDQLIGKFGKAQVYLVN TRVPRSYENHVNTLMAEAAKDKKNVTLIDWYSRSKGHTEYFAPDGIHLENDGVEALTDEI LKIIKKK >gi|224999905|gb|ACJC01000095.1| GENE 12 16408 - 19017 1727 869 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 858 5 806 815 669 43 0.0 MDINQMTYAVQGALQKAVAYSKEYELQNIEIEALLKATMNENDSLFKSILERANIDVNQL EQAYDNQLSHYPTVQGDNVQYGQYISSKTNELLNKAEKYMKSYEDEFISMEHILRAAIDT DETTQKWVGNKAEVIKEIITKVRGGNHVTSQNPEVNYEALEKYGRDLVEEVRQGKMDPVI GRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPESLLDKTIFELD LSALVAGAKYRGEFEERLKAVLKEVKESEGRIILFIDEIHMLVGAGKTDGAMDAGNMLKP MLARGELHCIGATTLNEYREYIEKDSALERRFQKVGVSEPDVEDTISILRGLKERYEVYH GVRIQDRALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDQVNRRVMQ LEIEESALKNESDNASKHRLEELQEELSNEKEKQASLKSRVEQEKEKIAKVQEKRAELDS SRQALEDAQTEGNLEKAAELQYGTIPQLEKELQEFEEAFQDETGEDSERMIREVVSDEEI GDIVSQWTGIPVSKLVETEREKLLSLSDILHKRVVGQDKAVDLVSDAVVRARAGIKDPNR PIGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHAVSRLIGAPPGYVGH DEGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIM TSNIGSQVLLENVKDAGEISDDTEKAVMDSLHAYFKPEILNRMDDIVLFKPLSVNDMSMI VDKILTQLNMRLLDQHISIEVTEEAKKWLGEEAYEPQFGARPLKRFVQRQIETPIARMMI KESLPEGTIIKVDLNDNKELDFKVVKPTS >gi|224999905|gb|ACJC01000095.1| GENE 13 19196 - 19390 265 64 aa, chain - ## HITS:1 COG:no KEGG:SERP0566 NR:ns ## KEGG: SERP0566 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 64 1 64 64 91 95.0 8e-18 MRYLMTFIWAVLLLQMVNFVLNSLNSGPALNVINPIIIAVIFTIVVAILDSILKPSKGSS QYES >gi|224999905|gb|ACJC01000095.1| GENE 14 19671 - 20612 1354 313 aa, chain + ## HITS:1 COG:SA0842 KEGG:ns NR:ns ## COG: SA0842 COG0332 # Protein_GI_number: 15926572 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Staphylococcus aureus N315 # 1 313 1 313 313 549 88.0 1e-156 MNVGIKGFGAYAPKNIIDNAYFEQFLETSDEWISKMTGIKERHWADENQDTSDLAYNASI KAIEDAGIQPEDIDMIIVATATGDMPFPSVANILQERLGTGKVATMDQLAACSGFMYSMI TAKQYIQSGDYKHILVVGADKLSKITDMTDRSTAVLFGDGAGAVVMGEVAEGRGIISYEM GSDGSGGKYLYLDRETGKLKMNGREVFKFAVRIMGDASTRVVEKAGLSSEDIDLFVPHQA NIRIMESARERLGIEREKMSVSVNKYGNTSAASIPLSINQELQNGKIKDDDTLVLVGFGG GLTWGAIVIKWGK >gi|224999905|gb|ACJC01000095.1| GENE 15 20624 - 21868 1701 414 aa, chain + ## HITS:1 COG:SA0843 KEGG:ns NR:ns ## COG: SA0843 COG0304 # Protein_GI_number: 15926573 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Staphylococcus aureus N315 # 1 413 1 413 414 709 88.0 0 MNKNNRVVITGIGALSPIGNDAKTTWDNALKGVNGIDKITRIDTDDYNVHLAGELKDFNI EDHIDRKEARRMDRFTQYAVVAAREAVKDAQLNINEKNADRIGVWIGSGIGGMETFEVAH TTLVERGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGSTVTACATGTNSIGEAFKIIQ RGDADAMVTGGTEAPITHMAIAGFSASRALSTNNDPETACRPFQEGRDGFVMGEGAGIVV LESLDSAKERGAEIYAEVVGYGSSGDAHHITAPAPEGEGGSRAMQAALDDAGIKAQDVQY LNAHGTSTPVGDLYEVQAIKNTFGDAAKSLKVSSTKSMTGHLLGATGGIEAIFSALSIRD SKVAPTIHAITPDEECDLDIVPNVAQDLDITYAMSNSLGFGGHNAVLVFKKFED >gi|224999905|gb|ACJC01000095.1| GENE 16 21939 - 22310 251 123 aa, chain - ## HITS:1 COG:no KEGG:SERP0569 NR:ns ## KEGG: SERP0569 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 123 1 123 123 171 96.0 1e-41 MSINSYLISSLFTPVLSIIIWLFYSNHFINLINILFYTSFIIFIVAFLILLIQEGIFDAT SFGFRRLKYQLSSTKRKRMMKNDHFFNPQKVKKESYIISPWVVPTLIVNLTYIVVSIGVS LLL >gi|224999905|gb|ACJC01000095.1| GENE 17 22551 - 23477 1076 308 aa, chain + ## HITS:1 COG:SA0845 KEGG:ns NR:ns ## COG: SA0845 COG0601 # Protein_GI_number: 15926575 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 308 1 308 308 511 89.0 1e-145 MTKYVLKRLCYMFVSLFIVITITFFLMKLMPGSPFNDTKLNAQQKEILNEKYGLNDPVAL QYVNYLKNVVTGDFGNSFQYHNMPVWDLVKPRLIPSMEMGITAMVIGVVLGLVLGVAAAT KQNTWVDYTTTIISVIAVSVPSFVLAVLLQYVFAVKLEWFPVAGWEGFSTAILPSLALSA TVLATVARYIRAEMIEVLSSDYILLARAKGNSTLKVLFGHALRNALIPIITIIVPMLAGI LTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMATTILFSTLFIVSIFIVDILYGVIDPR IRVQGGKK >gi|224999905|gb|ACJC01000095.1| GENE 18 23477 - 24547 1065 356 aa, chain + ## HITS:1 COG:SA0846 KEGG:ns NR:ns ## COG: SA0846 COG1173 # Protein_GI_number: 15926576 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 622 86.0 1e-178 MSNKEDVTNINGDISNGTMSHTSNDISNTDFIIRDLDLNQEPEMPRESKNFWQDAWSQLK RNKLAVIGMIGLLLIVIMAFIGPLMNKHDFAEQNVDHRNLPAKIPLLDHVSFLPFDGKGT DGKNAYKEAGAKENYWFGTDQLGRDLWTRTWKGAQISLYIGVVAALLDICIGVVYGAISG FFGGRVDDVMQRILEIIASIPNLIVVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEF LKLKNQEFVLASQTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGV PAPKTSLGSLVNDGRAMLLIHPHELFIPAIILSLLILFFYLFSDGLRDAFDPKMRK >gi|224999905|gb|ACJC01000095.1| GENE 19 24562 - 25641 617 359 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 20 323 33 328 329 242 41 3e-63 MTETVLEVNDLHVSFDIAAGEVQAVRGVDFHLNKGETLAIVGESGSGKSVTTKAITKLFQ KDTGRIKKGEILFLGEDLAQKSEKELIQLRGRDISMIFQDPMTSLNPTMQIGKQVMEPLI KHKKLSKAKAKQRALEILNLVGLPRAEKRFKAYPHQFSGGQRQRIVIAIALACEPKILIA DEPTTALDVTMQAQILDLMKELQNKIETSIIFITHDLGVVANIADKVAVMYGGQMVETGD VNEIFYDPKHPYTWGLLSSMPDLTTSNDTDLIAIPGTPPDLLHPPIGDAFARRSRYALDI DFREEPPWYKVSPTHFVKSWLLDARAPKVTPPSMVQKRLRTMPNNYKQPQRVERVAFNE >gi|224999905|gb|ACJC01000095.1| GENE 20 25634 - 26575 708 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 7 276 11 282 329 277 54 7e-74 MSNENVLLQVKNLKQYFNQGKHNEVKAIDNISFDVYKGETLGLVGESGCGKSTTGKAIIK LNDITDGAIEYDGKDIHQIRKRKERLKFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDIH KLASSQRDRKKRVYDLLETVGLGKEHANRYPHEFSGGQRQRIGIARALAVEPEFIIADEP ISALDVSIQAQVVNLLLKLQRERDITLMFIAHDLSMVKYISDRIAVMHFGKIVEIGPADD IYKYPLHDYTKSLLSAIPQPDPDVERNRQRVLYHEDAKLNEQRQLNEIRPQHYVFSTQNE AIKLKQKYGLSVK >gi|224999905|gb|ACJC01000095.1| GENE 21 26599 - 28242 1702 547 aa, chain + ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 2 547 3 548 551 701 66.0 0 MKSLKGLIILLSVCIVLSACSNKQSLYSDQGQVFRKVISQDMTTLDTALITDAVSGDIAA QAFEGLYTLNKEDKAEPAIATSFPKKSNGGKTLTINLRKNAKWSNGDSVTAYDFVYAWRK VVNPKTASEFAYIMSDIKNADEVNAGKKSVKDLGIKAIGKYQLQVDLERPVPYINELLAL NTFNPQNEKVAKRFGEQYGTTAEKAVYNGPFEVTNWKVEDKIQLVKNEQYWDKKNVKLDK VNYKVLKDQQAGASLYDTGSVDDTIITSEQVDKYRGESALNYRLTAATFFIKMNQKTVPE FKNKHLRLAIAQAINKKGYVNSVLNDGSLPSNNFTGIGTADTPDGKDFARTIKSPLKFNP DLAKKNWREAQKELGKNKFTFTMNTQDTPASKIAAEYIKSQVEKNLPGVTLKIKQMPFKQ KTTLELANNYEASYSGWSPDYPDPTAFLQTMTKDNAQNNTDWSNKEYDQLLKEANSKLLR KPGERNTSLQKAEYILLHEAPVAPVYQKGEAHLTNPQVKGLQYHKVGPETTLKHVYIDKS INRETGK >gi|224999905|gb|ACJC01000095.1| GENE 22 28297 - 29286 925 329 aa, chain - ## HITS:1 COG:SA0855 KEGG:ns NR:ns ## COG: SA0855 COG0180 # Protein_GI_number: 15926585 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 329 1 329 329 585 88.0 1e-167 METLFSGIQPSGIPTIGNYIGALKQFVDVQDDYECFFCIVDQHAITVPQDRLKLRKQIRQ LAAIYLASGIDPDKSTLFIQSEVPAHVQAGWMLTTIASIGELERMTQFKDKAQKRADGVP AGLLTYPPLMAADIVIYNTNIVPVGDDQKQHMELTRNLVDRFNSRYNDVLVKPEVRMPKV GGRVMSLQDPTKKMSKSDDNQKNFISLLDEPHVAAKKIKSAVTDSDGIIKFDRENKPGIS NLLSIYSGLTNDSIKNIESKYEGEGYGKFKGDLSEIVKDFLINFQEKYASFYNSDDLDDI LDKGKEKAQKASFKTLKKMEKAMGLGRKR >gi|224999905|gb|ACJC01000095.1| GENE 23 29577 - 29972 482 131 aa, chain + ## HITS:1 COG:SA0856 KEGG:ns NR:ns ## COG: SA0856 COG1393 # Protein_GI_number: 15926586 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 240 98.0 4e-64 MVTLFTSPSCTSCRKAKAWLQEHDIPYTERNIFSEHLTIDEIKQILKMTEDGTDEIISTR SKTYQKLNVDIDSLPLQDLYSIIQDNPGLLRRPIILDDKRLQVGYNEDEIRRFLPRKVRT FQLQEAQRLVD >gi|224999905|gb|ACJC01000095.1| GENE 24 30326 - 31048 867 240 aa, chain + ## HITS:1 COG:SA0857 KEGG:ns NR:ns ## COG: SA0857 COG4862 # Protein_GI_number: 15926587 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Staphylococcus aureus N315 # 1 240 1 239 239 326 77.0 3e-89 MRIERVDDTTVKLFITYSDIEARGFSREDLWSNRKRGEEFFWSMMDEINEEEDFVVEGPL WIQVHAFEKGVEVTISKSKNEDAMNMSDDDTNHQFDDQVNELLAQTLEGEESLEDLFEQR KQQKKNHQDKQQRRAHKPSNVRNIIVKFDDLEQVIDYAYHNNQNTDEYEDLLYMIDNKYY YSIHFDDSVSQEMINDSYSQLLEFAYPTDKTNIYLNDYAKIIMSHNVTSQVRKYFTDTNE >gi|224999905|gb|ACJC01000095.1| GENE 25 31143 - 32108 556 321 aa, chain + ## HITS:1 COG:SA0858 KEGG:ns NR:ns ## COG: SA0858 COG4469 # Protein_GI_number: 15926588 # Func_class: R General function prediction only # Function: Competence protein # Organism: Staphylococcus aureus N315 # 1 313 3 313 328 216 38.0 3e-56 MAINHQGQKILAQHANKFDKYQCPHCKSEVILKQGMTLIAHFAHKTRFNHHCSKSESVEH YEAKLYLARIYEALNFNVEIEPYCKEVLQYPDIVINQKNAIEVQFSKISISNIIRRTTGL KRIGLNVIWIIKDVPLKDKYVKLSPFQSAFIHPINRTLVTWDSKKFVLILYSHLQHVGGK NFVAQRKVLKFEDIINMTFQSNNVPNFRLSASNIQRYINYCRKRHSVLEPTLSAMYQLNM CDSDVISKLGYVVPHQIYLITHPIEWQLKYLLLRRTLNDNELCKQLLSKVKFRVFVTFQY DKRQILNTILREFDYLYEHEA >gi|224999905|gb|ACJC01000095.1| GENE 26 32172 - 33980 1938 602 aa, chain + ## HITS:1 COG:SA0859 KEGG:ns NR:ns ## COG: SA0859 COG1164 # Protein_GI_number: 15926589 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Staphylococcus aureus N315 # 1 602 1 602 602 1046 89.0 0 MSQQLTREEQERKYPEYTWDLTTIFKSDEAFEEAFKSIEAKIGEEEKFKGHLGESAETLY EALSLEDELGTKLEKVYVYAHLKQDQDTANDKYTGLEARAHQLVIKYSSAWSFLVPEILQ LDEATIQSFIDSNDDLKRYEFDLKLINEKRPHILDANTEKLLTEAQDALSTPSNVYGMFS NADLEFEDAIDKDGQAYPLTQGTFIKYLESDDRELRASAFRNVYKAYGAHNNTLGATLAG EVKKNVFNARTHHYRSARERALSNNHIPEAVYDNLIKTVHKYLPLLHRYTKLRQELLGLD DLKMYDLYTPLVKDVKFEMPYEEAKSWMLKALEPMGEEYLNVVKEGLDNRWVDVYENKGK RSGGYSSGGHLTNPFILLNWSDTVSDLYTLVHEFGHSAHSYFSRQNQPSNLSDYTIFVAE VASTCNEALLSDYMDKHLDDERRLLLLNQELERFRATLFRQTMFAEFEHKIHQIEEAGEP LTPNRMNEEYAKLNKLYFGEAVETDEDISKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQ ILTEGQPAVERYINEFLKKGSSNYPIEILKNAGVDMTTPQPIEEACEVFEQKLDAFEKLM KA Prediction of potential genes in microbial genomes Time: Sun May 29 07:37:45 2011 Seq name: gi|224999904|gb|ACJC01000096.1| Staphylococcus epidermidis W23144 contig00136, whole genome shotgun sequence Length of sequence - 26863 bp Number of predicted genes - 31, with homology - 30 Number of transcription units - 16, operones - 9 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 50 - 81 4.1 1 1 Op 1 3/0.000 - CDS 211 - 1008 512 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis 2 1 Op 2 1/0.000 - CDS 1031 - 1414 354 ## COG2346 Truncated hemoglobins 3 1 Op 3 . - CDS 1478 - 2068 528 ## COG4116 Uncharacterized protein conserved in bacteria - Prom 2110 - 2169 6.9 + Prom 2089 - 2148 8.3 4 2 Op 1 . + CDS 2352 - 2699 398 ## SE0694 hypothetical protein 5 2 Op 2 6/0.000 + CDS 2716 - 3351 738 ## COG2357 Uncharacterized protein conserved in bacteria 6 2 Op 3 7/0.000 + CDS 3365 - 4174 571 ## COG0061 Predicted sugar kinase 7 2 Op 4 1/0.000 + CDS 4171 - 5025 231 ## PROTEIN SUPPORTED gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family 8 2 Op 5 1/0.000 + CDS 5050 - 6435 1706 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 9 2 Op 6 . + CDS 6445 - 8289 1562 ## COG0475 Kef-type K+ transport systems, membrane components + Term 8450 - 8493 4.5 + Prom 8732 - 8791 3.1 10 3 Op 1 . + CDS 8833 - 8988 61 ## gi|242244024|ref|ZP_04798466.1| conserved hypothetical protein 11 3 Op 2 . + CDS 8995 - 9612 460 ## SERP0591 hypothetical protein + Term 9736 - 9779 2.1 - Term 9858 - 9906 5.0 12 4 Tu 1 . - CDS 9918 - 10412 527 ## COG5444 Uncharacterized conserved protein - Prom 10589 - 10648 9.1 13 5 Op 1 . - CDS 10662 - 11231 546 ## COG5620 Uncharacterized conserved protein 14 5 Op 2 . - CDS 11231 - 11800 576 ## BMQ_2681 hypothetical protein - Prom 11825 - 11884 2.7 - Term 12156 - 12203 12.0 15 6 Op 1 . - CDS 12391 - 12978 240 ## SAB0221 hypothetical protein - Prom 13036 - 13095 10.2 16 6 Op 2 . - CDS 13273 - 13941 504 ## SLGD_01956 hypothetical protein - Prom 13973 - 14032 5.9 17 7 Tu 1 . - CDS 14547 - 15212 379 ## SLGD_01956 hypothetical protein - Prom 15375 - 15434 6.6 18 8 Tu 1 . - CDS 15750 - 15974 99 ## - Prom 16161 - 16220 5.6 + Prom 16110 - 16169 6.2 19 9 Tu 1 . + CDS 16217 - 16879 265 ## SLGD_00645 hypothetical protein + Prom 16885 - 16944 4.5 20 10 Tu 1 . + CDS 16980 - 17651 444 ## SERP0591 hypothetical protein + Prom 17661 - 17720 5.4 21 11 Op 1 . + CDS 17961 - 18482 226 ## gi|242242299|ref|ZP_04796744.1| conserved hypothetical protein 22 11 Op 2 . + CDS 18523 - 18822 393 ## COG4495 Uncharacterized protein conserved in bacteria + Term 18974 - 19007 -0.3 + Prom 19361 - 19420 7.6 23 12 Tu 1 . + CDS 19621 - 19911 199 ## COG0364 Glucose-6-phosphate 1-dehydrogenase + Prom 19980 - 20039 5.3 24 13 Op 1 . + CDS 20143 - 20388 149 ## COG0364 Glucose-6-phosphate 1-dehydrogenase 25 13 Op 2 1/0.000 + CDS 20397 - 20618 225 ## COG0364 Glucose-6-phosphate 1-dehydrogenase + Prom 20798 - 20857 6.2 26 13 Op 3 . + CDS 20893 - 23151 2098 ## COG0178 Excinuclease ATPase subunit + Term 23160 - 23210 1.3 + Prom 23525 - 23584 7.0 27 14 Op 1 . + CDS 23700 - 23840 102 ## gi|242242307|ref|ZP_04796752.1| hypothetical protein HMPREF0791_0833 28 14 Op 2 . + CDS 23908 - 24345 495 ## BPUM_3098 hypothetical protein + Term 24380 - 24426 2.0 + Prom 24822 - 24881 6.7 29 15 Op 1 . + CDS 24950 - 25156 104 ## gi|242242310|ref|ZP_04796755.1| hypothetical protein HMPREF0791_0836 30 15 Op 2 . + CDS 25153 - 25575 621 ## COG4808 Uncharacterized protein conserved in bacteria + Term 25604 - 25646 7.2 + Prom 26150 - 26209 4.6 31 16 Tu 1 . + CDS 26234 - 26815 494 ## gi|242242312|ref|ZP_04796757.1| hypothetical protein HMPREF0791_0838 Predicted protein(s) >gi|224999904|gb|ACJC01000096.1| GENE 1 211 - 1008 512 265 aa, chain - ## HITS:1 COG:SA0860 KEGG:ns NR:ns ## COG: SA0860 COG2761 # Protein_GI_number: 15926590 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Staphylococcus aureus N315 # 8 264 1 257 261 419 89.0 1e-117 MAEELRIMENKSREDTNLSPVSKIEIYSFFDPFSKDCFKLSAILSKLRIEYNKYIKVRHI LNPSLKVLTKCQAQSTSDFDNIALAYKAAELQGRIRAERFIHLMQNEIIPKRDIITEDMI SDCINNAGIDYQVFKEDLQKDKLTDSLKVDLHIAREMEIEQAPSLVFFSENVHEEGLKVE GLYPYHIYTYIINELMGQPIEKNLPPKLEYYIQKKQLVTMEELLTIYEWPEKLLNKELKK LTLQQKVEKLQYPEGEFWKSKMPQC >gi|224999904|gb|ACJC01000096.1| GENE 2 1031 - 1414 354 127 aa, chain - ## HITS:1 COG:SA0861 KEGG:ns NR:ns ## COG: SA0861 COG2346 # Protein_GI_number: 15926591 # Func_class: R General function prediction only # Function: Truncated hemoglobins # Organism: Staphylococcus aureus N315 # 7 127 1 121 121 201 78.0 3e-52 MEHGDIMSKTPYELIGQKALYQMIDHFYQLVEKDSRINHLFPGDFKETSRKQKQFLTQFL GGPDLYTQEHGHPMLKRRHMEFTISEYERDAWLENMHTAIQHAQLPAGVGDYLFERLRLT ANHMVNS >gi|224999904|gb|ACJC01000096.1| GENE 3 1478 - 2068 528 196 aa, chain - ## HITS:1 COG:SA0862 KEGG:ns NR:ns ## COG: SA0862 COG4116 # Protein_GI_number: 15926592 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 194 1 194 197 192 55.0 5e-49 MSTNNEIEFKQILDQDTYSKIYELYFKNQSPFEQTNFYIDTENFKLKQHQAALRIRVKDY MYEMTLKVPAEVGLTEYNHSVNIEPKLDMSLRLSQLPNDIRNILEQDFNILENELKVLGN LTTYRLETEYQNELLVLDKSEYLGKTDYELEFEVHSYDEGYSKFKSLLQHFNLQHQKPLN KVQRFFQEKQNASDKE >gi|224999904|gb|ACJC01000096.1| GENE 4 2352 - 2699 398 115 aa, chain + ## HITS:1 COG:no KEGG:SE0694 NR:ns ## KEGG: SE0694 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 115 1 115 115 199 100.0 2e-50 MRIYINEIKLKDDGVYCFSEESTEGLEEVGQMLVDSDNYGFAYLLDDGQSYSYLIFVQET WSMLHENRDKRIIINNHLELKHFQEELDYVLNNIEGNNNYGKEFVSAVEKTFELE >gi|224999904|gb|ACJC01000096.1| GENE 5 2716 - 3351 738 211 aa, chain + ## HITS:1 COG:SA0864 KEGG:ns NR:ns ## COG: SA0864 COG2357 # Protein_GI_number: 15926594 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 211 1 211 211 358 91.0 4e-99 MNQWDQFLTPYKQAVDELKVKLKGLRKQYEVGEHNSPIEFVTGRVKPISSVIDKANKRGI PFDCLHEEMYDIAGLRIMCQFVDDIDIVVDILRQRQDFKVIEERDYIRNTKASGYRSYHV IIKYPIETLSGQKHILAEIQIRTLAMNFWATIEHTLRYKYDGAYPDEIQHRLERAAEAAY LLDEEMSEIKDEIQEAQKYYTQKRAKKHEND >gi|224999904|gb|ACJC01000096.1| GENE 6 3365 - 4174 571 269 aa, chain + ## HITS:1 COG:SA0865 KEGG:ns NR:ns ## COG: SA0865 COG0061 # Protein_GI_number: 15926595 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Staphylococcus aureus N315 # 1 269 1 269 269 531 94.0 1e-151 MRYTILTKGDSKSNALKHKMINHMKDFQMVEDSENPEIVISVGGDGTLLQAFHQYSHMLS KVAFVGIHTGHLGFYADWLPHEVEKLIIEINNSEFQVIEYPLLELIVRYNDNGYETRYLA LNEATMKTENGSTLVVDVNIRGKHFERFRGDGLCISTPSGSTAYNKALGGALIHPSLEAM QIAEIASINNRVFRTVGSPLVLPKHHTCLITPVNHDTIRTTIDHVSIKHKNVNAIQYRVA NEKVRFARFRPFPFWKRVHDSFISSDDER >gi|224999904|gb|ACJC01000096.1| GENE 7 4171 - 5025 231 284 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|238855152|ref|ZP_04645474.1| pseudouridine synthase, RluA family [Lactobacillus jensenii 269-3] # 4 243 3 250 287 93 27 1e-18 MILTYQIVQSEPVKTFLKNQDYSKRTLSAIKLNGALLLNGSPVTVRHVMNKGDRLEVHFP CETPSENLIPYDKELEVIYEDAYLIIVNKPQMQNCAPSREHPHGSLVEQVLAYYTKKGEK INPHIVTRLDRNTSGLVVFAKFGHVHHLFSKVKFKKEYVALAYGHTQSSGVIEAPIARRS DSIIKREVNDKGKYAITVYQRLMQNETASLCKVKLLTGRTHQIRVHFEYIGHPLIGDDLY GGNHPCVHGQALHCCSVEFIHPIYRSHYLINVDYKQLIKLFNMV >gi|224999904|gb|ACJC01000096.1| GENE 8 5050 - 6435 1706 461 aa, chain + ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 1 460 1 460 461 707 82.0 0 MSNETEMKDNVREDVYDKELFDRLLDQNDIDEFRKEFLELHNYEQSEYFEDTDDENRQKI FEFLSPKEVANFFDQLDFDDDDYESLFDNMDATYASHVLEEMSYDNAVDILNELSKPKVA SLLTLMNKDKANEIKALLHYEEDTAGGIMTTEFISLKSTTPVKEALIHVKEQAPDAETIY VIFAVNEDEQLVGVLSLRDLIVAENDAYIEDVMSERVISANVGDDQEDIAQLMRDYDFIA VPVVDYQNHLLGIITIDDILDVMDEEASEDYSRLAGVSDIDSTSDSVFKTASKRLPWLIV LTFLGMITATILGSFEDTLSQVALLAAFIPIISGMSGNSGTQSLAVSVRNISTGEINEQS KFKIALREAGSGLLSGIVCAVILFLIIVVIFRQPLLALIVGGSLTCAMTVGTLVGSMIPL VMNKCKIDPAVASGPFITTINDIVSMLIYFGLATSFMSYLT >gi|224999904|gb|ACJC01000096.1| GENE 9 6445 - 8289 1562 614 aa, chain + ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 399 1 399 399 572 85.0 1e-163 MEFLSLVIVVVAAFMTPIIVHRFNINFLPVVVAEILMGIVIGHSFLNLVERDAFLNILST LGFIFLMFLSGLEIDFNAFKKDSRPRQGEDKHEKDVPGHLKLALTVFAFIMMISVVLAFA FKWLGLVNDVLLMVIIISTISLGVVVPTLKEMNIMRTTIGQFILLVAVLADLFTMILLTV YGAIYGEGGSTIWLTGILVVFTVVFYVIGVLFKRMSFLQKLMDGTTQIGIRAVFALIILL VALAEGVGAEYILGAFLAGVVVSLLKPNEEMVEKLDSFGYGFFIPIFFIMVGVDLDIPSL IKEPSLLLIIPVLIFSFIISKLIPVFYIRRWFDTKTTIASAFLLTSTLSLVIAAAKIAEK LKAISPETSGILILSAVITCVFVPVIFKKMFPIPNEVGRRIEVSMIGKNQLTIPIAQNLT SQLYDISLYYRKDLSDSRKLSDDITMIEIADYEEDLLERLGLFERDIVVCSTNDDNINKR VALMAKKHGVKRVICRLESTNEDPTLKHQGIEVFSNYLSNKILLKSLIETPNMLNLLSNV ETSLYEIQMLNYQYENIQLRNFPFGGDIIFVRIIRDNDSIVPHGDTQLRYKDRLIVTGTK EYVDELKQELEFYY >gi|224999904|gb|ACJC01000096.1| GENE 10 8833 - 8988 61 51 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242244024|ref|ZP_04798466.1| ## NR: gi|242244024|ref|ZP_04798466.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 51 77 128 128 78 86.0 1e-13 MKNKLQHGSQEVVESVENGANYFSDKAKKVKNVGEVVNNIKKVVNPMKWSW >gi|224999904|gb|ACJC01000096.1| GENE 11 8995 - 9612 460 205 aa, chain + ## HITS:1 COG:no KEGG:SERP0591 NR:ns ## KEGG: SERP0591 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 204 1 203 207 296 78.0 2e-79 MDYVYTIYKNPRYKIIQKDNRYLMVDLEQNWYSYLCPMLNWFIPIKCTELTYQEFNNLNI FNNGGQNSHGMMAAGIGVTISVLLRSIVGFMDINISRIWIAIMFLIGFIAVIALRLSIRK KLNHPAFNKKSKQKVMLIPSFKNMILVVFCYLMSIYLITGLFHMMVIENIQNIWIYICWL GIFFAFTFMNIAAILDRKVHAKLKM >gi|224999904|gb|ACJC01000096.1| GENE 12 9918 - 10412 527 164 aa, chain - ## HITS:1 COG:BS_yeeF KEGG:ns NR:ns ## COG: BS_yeeF COG5444 # Protein_GI_number: 16077749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 6 145 676 815 827 88 33.0 5e-18 MNFEEKLNETYQEIANHINDMIPTEWEQVYTMAYIDEGGGEVFFNYTTPVSDDLHYYTTI PDDYNISQKIFSELSFTLYKLFKRLRKLFIENTQEPWTSCEFDFTNDGKLNVSFDYIDWK NSEFGPLAREYYYEYKKFGVLPEKEYAINKVKKVEQFIKKQEEQ >gi|224999904|gb|ACJC01000096.1| GENE 13 10662 - 11231 546 189 aa, chain - ## HITS:1 COG:CAC1643 KEGG:ns NR:ns ## COG: CAC1643 COG5620 # Protein_GI_number: 15894920 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Clostridium acetobutylicum # 20 187 18 181 182 116 38.0 2e-26 MEDQMIEIRDFKKVANIPQEIINKYENILSEEIIEFWKDYGLGTFFEGFMKSINPEEYTD LMEYGTQFFKDAVPLFVTGLGDIIYVEKKDGFMGILKFRYKETKVLMQMFNLTIKLIIDE NDKYFCDSHIEPQMYFEALKTKEAPAYDECFGYVPILPLGGKEVVEHMDTVKIREHILLI TELTGPIND >gi|224999904|gb|ACJC01000096.1| GENE 14 11231 - 11800 576 189 aa, chain - ## HITS:1 COG:no KEGG:BMQ_2681 NR:ns ## KEGG: BMQ_2681 # Name: not_defined # Def: hypothetical protein # Organism: B.megaterium_QM_B1551 # Pathway: not_defined # 25 188 157 320 322 136 46.0 4e-31 MTHTPKDSMVKSEGKHVNHTNNSRENIKRIEPISVSFKKNIKHDEKEFYRQLKDQEQGLN KLTVKEYMENREKYIKNGRDIEAKYYQMLMREKAIKRKFQELLSSGVSIKEAERQSEIWL KKQAALHNLDMLAGGYAHNIGGLGDTKINSSLGSQWKYKIDDLNYQIKEQSKKFNEKELE KIYLNISLN >gi|224999904|gb|ACJC01000096.1| GENE 15 12391 - 12978 240 195 aa, chain - ## HITS:1 COG:no KEGG:SAB0221 NR:ns ## KEGG: SAB0221 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_RF122 # Pathway: not_defined # 1 181 1 181 200 161 54.0 1e-38 MVYFVLIGVFIIFYLALFDSLLKSENLSILSIILDFVIIVMLIVFHFIGNKLTGNDLSNY IAFTLIGSFVYMYFAIKNFWTKPKVLNYLISKQENANQDDIEYQELDLQVSKIKSVYYFL IAIALLILTKIHIVSDIKADSLSMNPVFIFVGMIIIVIWLIMDLYRKKKYGIFLFKSLIP IVVTVWIIISSVLLY >gi|224999904|gb|ACJC01000096.1| GENE 16 13273 - 13941 504 222 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01956 NR:ns ## KEGG: SLGD_01956 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 208 1 204 223 73 30.0 4e-12 MDKENLQVLSINNIKNSYLIGFALVNFIIFAFYIFLYCFIGMEGTVPNYMKIYLAISLFL WLILYLQEKGKILADFNRNNYKKRVFVYMLINILAGYNIPFLISSADIFYYSGVDGEAFK YWIIIASIILISMTGLFIFCYSEFEMFGNKQYIVLKILGVFLILLSFIALIYISFISPSD SGESKVIWVGCFFLFGVHIIMGRVYFYLAVLMNDIREDGLKL >gi|224999904|gb|ACJC01000096.1| GENE 17 14547 - 15212 379 221 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01956 NR:ns ## KEGG: SLGD_01956 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 207 1 204 223 86 32.0 7e-16 MEVNLQKKSIESIQHSYLIGLSLVNFIIFGFYYFIYSGPGIRGNMPLYMKIYLIVSLLLW LILYLQEREYIFKNYNRKNYKFRVATYMSINLLSGYNIPFLISSAYAFYFADSRDDTFTY WLLICGLIIVSAIGLFLFCLGEFEMFGIQNGSFIRMIGILTILLSFGLLLYVSLILPVVS EENQTIWMGMIMLFCSHLLIGRTYFYLGLLNYDISEDGLKL >gi|224999904|gb|ACJC01000096.1| GENE 18 15750 - 15974 99 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVDFVLPLISLALDLPAFITFVTDKTMSSFIILLPLFLLFYILNLSFFSNSSLRFSKEYI FLALSLTSTKVYSF >gi|224999904|gb|ACJC01000096.1| GENE 19 16217 - 16879 265 220 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00645 NR:ns ## KEGG: SLGD_00645 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 13 211 3 199 211 96 32.0 6e-19 MNDLKDNNKFSVNMYRIHKNPRYKLIELNQKKYLIDLEANYFFYLFPMLNWILKKELIEI TNDKLNEIEYDNKTNKERSQNIRWISGGAGVLMALLMRPFMDLLDVPSNIYINIIIFIIL VFSVISIRIYLRKKWDLKLKENNPRMNCKMRPTFKYMIVATGAYLLFLALSIFMFPLIFL EKLNILMCLCSLTFFFFFSIMNIIAFDNEKVIISKLSQSE >gi|224999904|gb|ACJC01000096.1| GENE 20 16980 - 17651 444 223 aa, chain + ## HITS:1 COG:no KEGG:SERP0591 NR:ns ## KEGG: SERP0591 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 16 214 4 198 207 87 28.0 3e-16 MEINDLNDNQKFRAKMYRIHKNPRYKLIELDQKKYLIDLESNCFTYLFPPLNWILKKELI EISNDKLNEIEYDDNNNKEQAKNIGCVSGGGGVLIATLMRPFMDLMDVPSNQSINSLIVI LTVLVIIFIRGSLRKRWDLKLNSSKTHIIKCIVRFKLKHMFFVIGAYLMFLLFSLLMIGL IFGVENNLMIYIGSPLIFFMFSLTNLITYDNEEIIISKLSQSE >gi|224999904|gb|ACJC01000096.1| GENE 21 17961 - 18482 226 173 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242299|ref|ZP_04796744.1| ## NR: gi|242242299|ref|ZP_04796744.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 173 1 173 173 202 100.0 5e-51 MTKQVLIEIDKDQLGNIRKNHINENKNNALGSIGTGIGVLFGILSKPILDYMNFTTNLLL NIILVLIAIIPLITLKEIINRKKKKKLKIRMTKNKMSAFVLPNFKELFKNTIINIILSFI IIALVFGFIIRNQSNYIYILGIMLVLSFILFQNVLLYAQTEISGKIGKIKSKS >gi|224999904|gb|ACJC01000096.1| GENE 22 18523 - 18822 393 99 aa, chain + ## HITS:1 COG:SA2371 KEGG:ns NR:ns ## COG: SA2371 COG4495 # Protein_GI_number: 15928164 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 95 1 95 98 146 84.0 1e-35 METIGSIIYLKEGSQKLMIINRGPIVEIEGQKYLFDYSACKYPVGVVEDQIYYFNEENID NVIFEGYSDQDETRFQELFKEMMGNLDEDVQRGTVQQKR >gi|224999904|gb|ACJC01000096.1| GENE 23 19621 - 19911 199 96 aa, chain + ## HITS:1 COG:SA1336 KEGG:ns NR:ns ## COG: SA1336 COG0364 # Protein_GI_number: 15927086 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Staphylococcus aureus N315 # 2 96 103 197 494 142 71.0 2e-34 MSLELDDKFDLKGNRLFYLAMSPKFFGVATNHLKESGLTNVKGLMRIIIEKPFGGDLKSA KKLNNQIRKSFKEEEIFGIGHYLSKEMIQNIERLRF >gi|224999904|gb|ACJC01000096.1| GENE 24 20143 - 20388 149 81 aa, chain + ## HITS:1 COG:lin2085 KEGG:ns NR:ns ## COG: lin2085 COG0364 # Protein_GI_number: 16801151 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Listeria innocua # 1 73 275 347 491 78 47.0 3e-15 MKCFNPNEIKESFVRGQYDGGMMNNEFVPAYRNEPNINSQSNTETFVADKIEIENSKWAS VTFYIRTEKRMKKIYPNRYRV >gi|224999904|gb|ACJC01000096.1| GENE 25 20397 - 20618 225 73 aa, chain + ## HITS:1 COG:SA1336 KEGG:ns NR:ns ## COG: SA1336 COG0364 # Protein_GI_number: 15927086 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Staphylococcus aureus N315 # 1 73 362 434 494 82 57.0 2e-16 MQFYYSNCEQNASNLLVINVQPNEGFSLCVNGKKSNQNNEMQKVKLSYTMPIKDKMNTVD AYENLIYDTLIGE >gi|224999904|gb|ACJC01000096.1| GENE 26 20893 - 23151 2098 752 aa, chain + ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 2 751 8 755 755 760 51.0 0 MDFINITGASQNNLKNIDVNIPKHLVTVFTGRSGSGKSSLVFNTVAAESEQLLNESYSSY IQFHLNQQPRPKVKKIKNLPVAMTINQKRFNGNSRSTVGTVSDIYASVRLLWSRIGEPFV GYSDAYSFNSPKGMCKTCEGLGYIEDINLDELLDWDKSLNEGAIDFPSFGPDKERGKAYR DSGLFDNNKKLKDYTKDELELFLYQEPMTLKNPPKEWRKSAKYVGLIPRFSRIFLGDKEF NKKRYAKHLKNVVNNKICPTCKGQRLNSKILSSKIMSKNISDFTQMTIKENLEFLNKLED PTAKYIIDPLKKQLEALEYIGLSYLTLNRVTTTLSGGEAQRLKLIRHLNSSLSDLVYIID EPSVGLHPEDIAKINEILKSLKDKGNTVLIVEHDPDVIKEGDYIIDMGPGSGKNGGEITF EGTYNELLSSNTSTGNALRNKHNLKENIREANHFYNIGPVTQNNLNNVKTSIPKHVLTVL TGVAGSGKSTLVKAGFENNDHTIFIDQKAVQGSNRSNLLTYLGVFDSVRSYFSKETGLNK AMFSYNSKGACPNCGGKGYIKTELAFMGDFSQTCEVCHGKRYKQEVLDATIDGYSIADVL NLTVDEGIIFFDKKNDIKSKLQSVSKTGLNYMSLGQPLSTLSGGEIQRVKLGQHLDEEIK NSIFIFDEPTTGLHESDIPILMECFDDLIDQNNTVILIEHNLSVMCEADWIIDVGPGPGL DGGKVQFSGTPKNFIDSSETLTSKHLKRYIKQ >gi|224999904|gb|ACJC01000096.1| GENE 27 23700 - 23840 102 46 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242307|ref|ZP_04796752.1| ## NR: gi|242242307|ref|ZP_04796752.1| hypothetical protein HMPREF0791_0833 [Staphylococcus epidermidis W23144] # 1 46 5 50 50 72 100.0 6e-12 MKKYVLKSLLVTTTASMIFGFIGETFAQAQETNFENGIKIQQDKVS >gi|224999904|gb|ACJC01000096.1| GENE 28 23908 - 24345 495 145 aa, chain + ## HITS:1 COG:no KEGG:BPUM_3098 NR:ns ## KEGG: BPUM_3098 # Name: not_defined # Def: hypothetical protein # Organism: B.pumilus # Pathway: not_defined # 1 143 55 182 183 81 39.0 1e-14 MPDSVANKGIDSGVKWLNQNKGQDYKGYKFIATDRNIQLVPNGKTIVTYGKGACVLAIGN AIAQNAIPWAKILKVKKATKAVGGIQKLSGKIKVAYKHQRNLGKSRKVTLKSGTKVAMKA FPKATRQVVLELFSLGRVATACFGW >gi|224999904|gb|ACJC01000096.1| GENE 29 24950 - 25156 104 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242310|ref|ZP_04796755.1| ## NR: gi|242242310|ref|ZP_04796755.1| hypothetical protein HMPREF0791_0836 [Staphylococcus epidermidis W23144] # 1 68 22 89 89 97 100.0 2e-19 MPIFKFACRWVVFKKFDTGFAQILFLKLKYIYLALIKLNIFLISLRVLYIGKKICNVLYN IKIKEIKL >gi|224999904|gb|ACJC01000096.1| GENE 30 25153 - 25575 621 140 aa, chain + ## HITS:1 COG:SA2247 KEGG:ns NR:ns ## COG: SA2247 COG4808 # Protein_GI_number: 15928037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 139 1 146 151 67 39.0 6e-12 MKKIIGLVASIVVLITLSACGIEKTKTFVGEKDNVKMEVTYTYKGDKVIKQKSVNTLKYS DFGFNDDTSKKMQDIKGVKESIKENDEGLVETTTIDLKNADMTTLEAEGIISTSDNKGKG FSMKKTEKKMKKDGFKEKED >gi|224999904|gb|ACJC01000096.1| GENE 31 26234 - 26815 494 193 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242312|ref|ZP_04796757.1| ## NR: gi|242242312|ref|ZP_04796757.1| hypothetical protein HMPREF0791_0838 [Staphylococcus epidermidis W23144] # 1 193 5 197 197 342 100.0 9e-93 MKDGIFFLYSNFSFPLLFLVTILIFREEISSVLTRIKTIKYSGSAGEVSFILNNIKQLGD DMESLKNSQIRRYGEEVLKTGHFGSGAQDDEDEEKYYFNLIHLSNLTGRELAEKGPFKTI ENLYKAYKFFEKNYSNIEDRSAGIIKEIYDNTVELKKKGGFLLDEAFVYEYRSFIEITLR GLEFANTDEIKND Prediction of potential genes in microbial genomes Time: Sun May 29 07:38:47 2011 Seq name: gi|224999903|gb|ACJC01000097.1| Staphylococcus epidermidis W23144 contig00137, whole genome shotgun sequence Length of sequence - 1509 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 37 - 447 476 ## gi|242242313|ref|ZP_04796758.1| hypothetical protein HMPREF0791_0839 - Prom 498 - 557 6.4 + Prom 429 - 488 14.1 2 2 Tu 1 . + CDS 565 - 1314 741 ## Bcer98_2290 hypothetical protein + Term 1382 - 1445 1.6 Predicted protein(s) >gi|224999903|gb|ACJC01000097.1| GENE 1 37 - 447 476 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242242313|ref|ZP_04796758.1| ## NR: gi|242242313|ref|ZP_04796758.1| hypothetical protein HMPREF0791_0839 [Staphylococcus epidermidis W23144] # 1 136 1 136 136 225 100.0 7e-58 MKKEYTANYIIPISILIALIVVPILIFTIGKHIYFSYQKHEEDKLEAKVHHVLKKKGWEN KIKTEKPNFTLNTQERDVEVTFKDEPYNTYQYDVNDDGKVTGDADLKMEYQERFDNDKKY REYRKRKPFEEKYNLK >gi|224999903|gb|ACJC01000097.1| GENE 2 565 - 1314 741 249 aa, chain + ## HITS:1 COG:no KEGG:Bcer98_2290 NR:ns ## KEGG: Bcer98_2290 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_NVH # Pathway: not_defined # 90 234 111 258 274 75 37.0 2e-12 MKKLMMSLLCCAICSTVLTTGSVNAQDNSSTNSESLKELQDEGAVSKSITENQWQQMKNQ ERKDEEKFESTAEAQWQKEQKQEQINRENRSRKKKFHLKKGDFFITNNVSSKGLTGHAAI YIGKGYIKEARGYGKSTRTKSFEKWKHSTLRKHKGGPKQRYIVVYRTSKKFRGKAGSYAK SHFNGVPYSITPNPYSKGTTYCSKLVWQSYYYGAGLYSVSPISSPQFIIYPYSLNQYIPS KAVRAYARS Prediction of potential genes in microbial genomes Time: Sun May 29 07:38:59 2011 Seq name: gi|224999902|gb|ACJC01000098.1| Staphylococcus epidermidis W23144 contig00138, whole genome shotgun sequence Length of sequence - 2271 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 888 1135 ## USA300HOU_0591 hypothetical protein 2 1 Op 2 . + CDS 947 - 1621 469 ## SERP0591 hypothetical protein + Prom 1631 - 1690 2.1 3 1 Op 3 . + CDS 1716 - 2271 317 ## SERP0591 hypothetical protein Predicted protein(s) >gi|224999902|gb|ACJC01000098.1| GENE 1 1 - 888 1135 295 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_0591 NR:ns ## KEGG: USA300HOU_0591 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 2 207 241 463 471 119 36.0 1e-25 IAYQQQKHFNVLPKNVQKYIDEHASDISNDLTASGSTQLMEQYGNFLKDNPGLTLNGKNL KDYGVGIAKVGKYGGKGITAVGFASGMYTDISEDNKTVGEAVAHNSLTTGVGIGTAAGTM AITAALVSNPGGWAVLGGLAVGTVLTYGAEWAYKNNWLGIKTGTDWVGRNVLDPAFDRVK HIYSIEKGKLEIGNILISEGYNKVKNHGKKIMKDDIVPSVMNGMNAGMSKVNKIKGNTES TIKDYQVKTNQTIKKTKKTINQVSDTVKDTSNHIKNHVGQSINRVTNSLNPMKGW >gi|224999902|gb|ACJC01000098.1| GENE 2 947 - 1621 469 224 aa, chain + ## HITS:1 COG:no KEGG:SERP0591 NR:ns ## KEGG: SERP0591 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 18 215 4 198 207 85 28.0 1e-15 MILKHSNLKNKTKTKANMYRIHKNPRYKVIELNKTKYLIDLESNYVTYLLPMLNWILDKE LIEVSRETLEKIEYDNNTNKEQTKGLGWLAGGGGVLFATLMRPFMDLMNIPSNLFINLLI VILSIIIVVFIRAYLRKKWDLKLKQKNHVIKCKVRSNAKHMFTAIALYFMFLLQSIFMIS LIFGVKNNLIIYIGLPIIIFVFSLTNLITYDNNEVIVTKSRQLE >gi|224999902|gb|ACJC01000098.1| GENE 3 1716 - 2271 317 185 aa, chain + ## HITS:1 COG:no KEGG:SERP0591 NR:ns ## KEGG: SERP0591 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 2 185 7 190 207 288 86.0 9e-77 MIYKNPRYRIIQKDNRYLMVDLEQNWYSYLCPMLNWFIPIKFTELTYQEFNNINIFNNGG QKSQGILAGGIGVTISVLLRSFVGYMDININRIGIFFMFLIGFVAVITLRLSIRKKLNHP VFNKKSKQRVILIPSFKNMIIVVFGYFMMLFLSIAPLQMIFEEKQNILVYIGWIGMLFLF TILNM Prediction of potential genes in microbial genomes Time: Sun May 29 07:39:11 2011 Seq name: gi|224999901|gb|ACJC01000099.1| Staphylococcus epidermidis W23144 contig00139, whole genome shotgun sequence Length of sequence - 2783 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 397 - 456 7.8 1 1 Tu 1 . + CDS 547 - 1491 1239 ## SAB0546 hypothetical protein + Prom 1609 - 1668 8.1 2 2 Tu 1 . + CDS 1702 - 2238 268 ## gi|242242319|ref|ZP_04796764.1| conserved hypothetical protein Predicted protein(s) >gi|224999901|gb|ACJC01000099.1| GENE 1 547 - 1491 1239 314 aa, chain + ## HITS:1 COG:no KEGG:SAB0546 NR:ns ## KEGG: SAB0546 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_RF122 # Pathway: not_defined # 1 205 202 429 465 125 35.0 3e-27 MAWAKVSQQKVLEIKMNKINHKLKDGKKLNKNDIFTIIAYQQQKHSNVLPKSVQKYIDEH ASDISNDLTASGSTQLMEQYGNFLKDNPGLTLNGKNFKDYGVGIAKVGKYGGKGITAVGF ASGMYTDISEDNKTVGEAVAHNSLTTGAGIGAGIVAGAFLATTPPGIAITGVIVIGTGVT LFSEAAYKNNWLGIKTGTDWVGKNVLDPTFNWISDKAKKIYSLEKSKLEFEKNMISTGYK TVKNKGDKIIKDDIAPAVKNGMVKGISTVNDIKHSTESTIKDYKNKAGQAMKKTEEKVHH VSDAVIHLIILKIM >gi|224999901|gb|ACJC01000099.1| GENE 2 1702 - 2238 268 178 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242319|ref|ZP_04796764.1| ## NR: gi|242242319|ref|ZP_04796764.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 178 1 178 178 284 100.0 2e-75 MNYITKQLLIEIDENEINKVKIGNLTKDVKRDAITNLSIGLSVLIGVLTMPLIDYLNFSM IYTLKIILVLVAYIPLFAIKWKVNKNKGRKLQLYSKKGNCRAFVLPENNVVIKNILLNLI VTFLVIVLTLGFVIEEQSNYIYIFGMMAILACILFQNVLLYAQTKIPGKIGTIKESNK Prediction of potential genes in microbial genomes Time: Sun May 29 07:39:25 2011 Seq name: gi|224999900|gb|ACJC01000100.1| Staphylococcus epidermidis W23144 contig00140, whole genome shotgun sequence Length of sequence - 4201 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 3, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 64 - 123 5.9 1 1 Tu 1 . + CDS 196 - 966 1136 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) + Term 1012 - 1059 7.8 - Term 1278 - 1317 6.0 2 2 Tu 1 . - CDS 1362 - 2447 970 ## COG0628 Predicted permease + Prom 2484 - 2543 7.0 3 3 Op 1 3/0.000 + CDS 2673 - 3428 661 ## COG2382 Enterochelin esterase and related enzymes + Prom 3489 - 3548 6.9 4 3 Op 2 . + CDS 3573 - 4082 530 ## COG1514 2'-5' RNA ligase Predicted protein(s) >gi|224999900|gb|ACJC01000100.1| GENE 1 196 - 966 1136 256 aa, chain + ## HITS:1 COG:SA0869 KEGG:ns NR:ns ## COG: SA0869 COG0623 # Protein_GI_number: 15926599 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 446 92.0 1e-125 MLNLENKTYVIMGIANKRSIAFGVAKVLDRLGAKLVFTYRKERSRKELEKLLEQLNQSEQ YLYEIDVQNDEDIINGFAQIGKDVGQIDGVYHSIAFANMEDLRGRFSETSREGFLLAQEI SSYSLTLVAHEAKKLMPEGGSIVATTYIGGEAAVQNYNVMGVAKASLEANVKYLALDLGE DNIRVNAISAGPIRTLSAKGVGGFNTILKEIEARAPLKRNVDQEEVGKTAAYLLSDLSSG VTGENIHVDGGFHAIK >gi|224999900|gb|ACJC01000100.1| GENE 2 1362 - 2447 970 361 aa, chain - ## HITS:1 COG:SA0870 KEGG:ns NR:ns ## COG: SA0870 COG0628 # Protein_GI_number: 15926600 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 1 361 1 361 361 519 85.0 1e-147 MFNKVWFRTGIFFIMLFILIKLFMEVHEVFAPIATIIGSVFLPFLISGFLFYICLPFQNI LEKWGFPRWASITTIFIGLIAIIAIVVSFIAPIIISNINNLIKQTPSLQREAEQLINFSL RQMDKLPDDVTHRINKAVKSMGDGATSILSNSVSYITSFISTVFLLIMVPFFLIYMLKDH EKFIPAIGKFFKGERKVFVVDLLKDLNFTLKSYIQGQVTVSIILGIILYIGYTIIGLPYT PLLVLFAGVANLIPFLGPWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVM GKSLSIHPLTIIVVILAAGDLGGFTLILVAVPLYAVIKTLVSNIFKYRQRIVDKANSNVK D >gi|224999900|gb|ACJC01000100.1| GENE 3 2673 - 3428 661 251 aa, chain + ## HITS:1 COG:SA0872 KEGG:ns NR:ns ## COG: SA0872 COG2382 # Protein_GI_number: 15926602 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Staphylococcus aureus N315 # 1 250 1 250 252 366 68.0 1e-101 MSEFKVGKINKKIIHSDILNRDVTLSIYLPEDYTNLFKYQLIFCFDGLDFFRFGRIQRIY EQLREEQSIQRAIIVGFHYEDVEKRREEFHPSGRRSNLTIKAMGKEILPYIDATFPTYKV GNTRLLIGDSLAGSIALMTAMTYPTIFSQVALLSPMYNENIKQKFDTCMNKDQLAIWHAI GLEEEDFILPTNGKRANFLTPNRELNQLIKEGNIEYFYKEFKGGHQWKSWKPLLGDILLQ FLSNQINGKYV >gi|224999900|gb|ACJC01000100.1| GENE 4 3573 - 4082 530 169 aa, chain + ## HITS:1 COG:SA0873 KEGG:ns NR:ns ## COG: SA0873 COG1514 # Protein_GI_number: 15926603 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Staphylococcus aureus N315 # 1 169 1 169 169 234 68.0 6e-62 MILGLALVPSKSFQDEVNAYRKRYDNHYAQIMPHITIKPQFEIDDHDFNLIKDEVKNRIS SIKPVEVHATKASNFAPISNVIYFKVAKTESLEQLFNQFNTEDFYGTAEHPFVPHFTIAQ GLTSQEFEDIYGQVKLAGVDHREIIEELSLLQYSEEEDKWTIIETFTLG Prediction of potential genes in microbial genomes Time: Sun May 29 07:39:33 2011 Seq name: gi|224999899|gb|ACJC01000101.1| Staphylococcus epidermidis W23144 contig00141, whole genome shotgun sequence Length of sequence - 27436 bp Number of predicted genes - 26, with homology - 26 Number of transcription units - 16, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 77 - 115 1.6 1 1 Op 1 1/0.714 - CDS 150 - 1271 996 ## COG0477 Permeases of the major facilitator superfamily 2 1 Op 2 . - CDS 1321 - 2496 1143 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase - Prom 2528 - 2587 6.6 + Prom 2897 - 2956 8.9 3 2 Op 1 . + CDS 3016 - 4500 1516 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 4 2 Op 2 . + CDS 4520 - 4735 142 ## SERP0608 hypothetical protein 5 2 Op 3 1/0.714 + CDS 4739 - 6301 1836 ## COG4108 Peptide chain release factor RF-3 + Term 6437 - 6495 -0.9 + Prom 6336 - 6395 8.1 6 3 Tu 1 1/0.714 + CDS 6610 - 7416 1082 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance + Term 7433 - 7480 9.1 + Prom 7462 - 7521 11.1 7 4 Op 1 1/0.714 + CDS 7624 - 9444 2011 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 8 4 Op 2 1/0.714 + CDS 9462 - 10820 1306 ## COG0168 Trk-type K+ transport systems, membrane components + Term 10829 - 10878 9.1 + Prom 10845 - 10904 7.6 9 5 Tu 1 . + CDS 10959 - 12464 1537 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 12525 - 12573 10.0 - Term 12513 - 12561 10.0 10 6 Op 1 1/0.714 - CDS 12567 - 13169 329 ## COG1266 Predicted metal-dependent membrane protease 11 6 Op 2 . - CDS 13175 - 13360 360 ## COG4873 Uncharacterized protein conserved in bacteria - Prom 13451 - 13510 10.0 12 7 Tu 1 . + CDS 13565 - 14551 878 ## COG0095 Lipoate-protein ligase A + Term 14564 - 14613 8.5 - Term 14550 - 14601 5.1 13 8 Tu 1 . - CDS 14629 - 14847 280 ## SERP0617 hypothetical protein - Prom 14918 - 14977 9.4 + Prom 14943 - 15002 9.8 14 9 Tu 1 . + CDS 15062 - 15637 394 ## COG4903 Genetic competence transcription factor + Term 15693 - 15749 8.0 + TRNA 15820 - 15894 88.3 # Asn GTT 0 0 + TRNA 15898 - 15986 59.5 # Ser GCT 0 0 + Prom 16503 - 16562 7.2 15 10 Op 1 . + CDS 16787 - 16972 121 ## gi|242242339|ref|ZP_04796784.1| conserved hypothetical protein 16 10 Op 2 . + CDS 16930 - 17166 205 ## SE0732 truncated pre protein + Term 17285 - 17332 2.6 + Prom 17173 - 17232 5.7 17 11 Tu 1 . + CDS 17385 - 17606 197 ## SE0733 hypothetical protein + Prom 17759 - 17818 9.7 18 12 Op 1 1/0.714 + CDS 18026 - 18778 409 ## COG3239 Fatty acid desaturase + Prom 18904 - 18963 4.6 19 12 Op 2 . + CDS 19030 - 19398 427 ## COG1279 Lysine efflux permease + Term 19421 - 19485 16.1 - Term 20010 - 20050 6.8 20 13 Tu 1 . - CDS 20278 - 20493 278 ## COG2314 Predicted membrane protein - Prom 20676 - 20735 10.6 + Prom 20467 - 20526 6.5 21 14 Tu 1 . + CDS 20652 - 21281 644 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Term 21518 - 21561 5.4 22 15 Tu 1 . - CDS 21576 - 22514 1179 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase - Prom 22548 - 22607 8.2 + Prom 22599 - 22658 3.5 23 16 Op 1 10/0.000 + CDS 22693 - 24054 1632 ## COG1169 Isochorismate synthase 24 16 Op 2 15/0.000 + CDS 24041 - 25714 1620 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 25 16 Op 3 9/0.000 + CDS 25701 - 26504 695 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 26 16 Op 4 . + CDS 26497 - 27315 1056 ## COG0447 Dihydroxynaphthoic acid synthase Predicted protein(s) >gi|224999899|gb|ACJC01000101.1| GENE 1 150 - 1271 996 373 aa, chain - ## HITS:1 COG:SA0874 KEGG:ns NR:ns ## COG: SA0874 COG0477 # Protein_GI_number: 15926604 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 372 25 396 396 527 83.0 1e-149 MEFARGMYILSYINFLPTVTSIAIAITSFAFSIHFIADAATNFVIGFLLKKFGSKLVLTS GFLLAFISLFLVIWFPASPFIIIFSAIMLGIAVSPIWVIMLSSVDERNRGKQMGYVYFSW LLGLLVGMVIMNLLIKFHPTRFAFLMALVVLIAWILYYFVNINLTNYNTKPVKAQLKQIV DVTQRHLILFPGILLQGAAIAALVPILPKYATQVVKVSTVEYTIAIIIGGIGCAFSMLFL SKIIDNNSKGFMYGVIFSGFILYTILIFGLSTITNIYIVWTIGLFIGLMYGILLPAWNTF MAGHINPNEQEETWGVFNSVQGFGSMIGPLVGGLITQFTNNLNNTFYFSAMIFLALAVFY GYYFIKTNRRVKP >gi|224999899|gb|ACJC01000101.1| GENE 2 1321 - 2496 1143 391 aa, chain - ## HITS:1 COG:SA0875 KEGG:ns NR:ns ## COG: SA0875 COG0707 # Protein_GI_number: 15926605 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Staphylococcus aureus N315 # 1 391 1 391 391 649 80.0 0 MVTQNKKILIITGSFGNGHMQVTQSIVNQLNEMNLNHLSVIQHDLFMEAHPIMTSICKKW YINSFKYFRNTYKRFYYSRPNELDKCFYKYYGLNKLINLLIKEKPDLILLTFPTPVMSVL TEQFNINIPIATVMTDYRMHKNWITPYSQRYYVATKDTKDDFIEAGVPASYIKVTGIPIA DKFEESIDKEEWLSQQHLDPSKPTILMSAGAFGVSKGFDYMINNILEKSPNSQVVMICGR SKELKRSLKSKFKDNPSVKILGYTNHMNEWMASSQLMITKPGGITISEGLSRCIPMIFLN PAPGQELENAYYFESKGFGKIADTPNEAIDIVSDLTNNEETLKVMSSKMLESKVGYSTRK ICKDLIDLIGHSSQPDEIYGKVPLYARFFVK >gi|224999899|gb|ACJC01000101.1| GENE 3 3016 - 4500 1516 494 aa, chain + ## HITS:1 COG:SA0876 KEGG:ns NR:ns ## COG: SA0876 COG0769 # Protein_GI_number: 15926606 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Staphylococcus aureus N315 # 1 493 1 493 494 885 87.0 0 MNASALFKKIRVKNVIGTLDIQVDDITTDSRTAKEGSLFVASKGYTVDSHKFCQNVVDQG CSIVVVNRELKLKGNVTQVVVPDTLRVASLLAHELYEFPSHQLTTYGVTGTNGKTSIATM IHLIYRKLNKNSAYLGTNGFQVNETKTKGANTTPETVALTKKIKEAVDANAEAMTMEVSS HGLTLGRLRGVEFDVAIFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNN DDDFSDYLASVTPYEVFTYGITHEAQFMAKNIKESLQGVEFEFCTPFGSFPVRSPYVGRF NISNIMAAMIAVWSKGTNLNEIINAVTELEPVEGRLEVLDPSLPIDLIIDYAHTADGMNK LIDAVKPFVKQKLIFLVGMAGERDLTKTPEMGRVACRADYVIFTPDNPANDDPKMLTAEL AKGATHENYIEFDDRAEGIRHAIDIAEPGDTVVLASKGREPYQIMPGHVKVPHRDDLISL KAAYQKFGGGPVED >gi|224999899|gb|ACJC01000101.1| GENE 4 4520 - 4735 142 71 aa, chain + ## HITS:1 COG:no KEGG:SERP0608 NR:ns ## KEGG: SERP0608 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 71 11 81 81 108 90.0 7e-23 MMMNVYYHQSNDSIMLAIPELFWSIELSKELDTDQLYEELVMQLFNLLTEVEADTLARNI TDLIRNESKGE >gi|224999899|gb|ACJC01000101.1| GENE 5 4739 - 6301 1836 520 aa, chain + ## HITS:1 COG:SA0877 KEGG:ns NR:ns ## COG: SA0877 COG4108 # Protein_GI_number: 15926608 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Staphylococcus aureus N315 # 1 520 1 520 520 973 93.0 0 MNLKEEIESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKTGKFATSDWMKVE QERGISVTSSVMQFDYDDYKINILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGIEPQT LKLFKVCKMRGIPIFTFINKLDRVGKEPFELLDEIEETLNIDTYPMNWPVGMGQNFFGII DRHSKTIEPFRDEENLLHLNEDYELKEEHAIKNDSAFEQAIEEMMLVDEAGEAFDNEALL NGELTPVFFGSALANFGVQNFLNAYVDHAPMPNARQTKEEVDVSPFDTDFSGFIFKIQAN MDPKHRDRIAFMRVVSGAFERGMDVTLQRTNKKQKITRSTSFMADDKETVNHAVAGDIIG LYDTGNYQIGDTLVGGKQKYSFQELPQFTPEIFMKVSAKNVMKQKHFHKGIEQLVQEGAI QYYKTLHTNQIILGAVGQLQFEVFEHRMNNEYNVDVVMEPVGRKIARWIENEEDIKDNMN TSRSILVKDRYDNYVFLFENEFATRWFEEKFSDIKLYSLL >gi|224999899|gb|ACJC01000101.1| GENE 6 6610 - 7416 1082 268 aa, chain + ## HITS:1 COG:SA0878 KEGG:ns NR:ns ## COG: SA0878 COG0861 # Protein_GI_number: 15926609 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Staphylococcus aureus N315 # 1 263 3 264 267 380 84.0 1e-105 MDPSLILPYLWVLLVLVFLEGLLAADNAIVMAVMVKHLPPKQRKKALFYGLLGAFIFRFI ALFLISIIANFWWIQAAGAVYLIYMSIKNLWQFFHQSNEKHHKETGDEHHFDETGNEKEV GPKSFWGTVFKVEFADIAFAIDSMLAALAIAVTLPKVGIHFGGMDLGQFIVMFLGGMIGV ILMRFAATWFVELLNKYPGLEGAAFAIVGWVGIKLVVMVLAHPDIGVLPEAFPHSALWQT IFWVVLVGLVLIGWLTSAIGNKKKGNQK >gi|224999899|gb|ACJC01000101.1| GENE 7 7624 - 9444 2011 606 aa, chain + ## HITS:1 COG:SA0879 KEGG:ns NR:ns ## COG: SA0879 COG0265 # Protein_GI_number: 15926610 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Staphylococcus aureus N315 # 228 606 393 769 769 378 60.0 1e-104 MDNDKKQVIPRSQYRRKRREYFHNEEREERIRREKIEKENQAKREQHQTKVNEERVKDNL RKARIEKLTQEEIHQQRDDKSYKQNNQMSKSKDDDNKIGEESLHDVRVLSDTSTLPHQSK SKQLNDNQSKENQYHNKVIESSENKSIKEHDNTSGNESKQHTKLTSKDSMLGVNSNHTEQ DSRGTQPYSSKHSYSQPEDKDNDNTQQAQFLKKEGEQGSRAENIKKINEFKQLVIAFFKE HWPKMLIIIGIIVLLLILNAIFTTVNKNDHTNDSAFNGTTKDETTAMKIAKNSVKSVVTV ENDLSNDTTVSDNKNESDNEIGSGVVYKKVGDSIYIFTNAHVVGNQEKQKVTYGNDKSVT GKVIGKDKWSDLAVVKAKVADENIKPMTMGDSNNIKLAEPILVIGNPLGTDFKGSVSQGI VSGLNRHVPVDIDKNDNYDALMKAFQIDAPVNPGNSGGAVVDRDGRLIGIVSLKIDMHNV EGMAFAIPINDVRKIAKELEHKGKVNYPNTEIKIKNVGDLDDSERNAINLPTKVNHGVLI GEVKENGLGDKSGLKKGDVIVELDGKKIEDNLRYRQVIYSHYDDQKTITAKIYRNGAEKN IKIKLK >gi|224999899|gb|ACJC01000101.1| GENE 8 9462 - 10820 1306 452 aa, chain + ## HITS:1 COG:SA0880 KEGG:ns NR:ns ## COG: SA0880 COG0168 # Protein_GI_number: 15926611 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 452 1 452 452 655 83.0 0 MSVLSQLLKKSSPQQGIILYYLFAIVVAFLLLNLPYVHKQGVEVNPIDTLFVAVSGISVT GLSPITIVDTYSTFGQIIILIILNIGGIGVMAIGTMLWVVLGKHIGIRERQLIMLDNNRD TMSGTVKLILEIVRTIFIIEFIGALLLAFYFYRDNPDLKNALMQGVFVSVSATTNGGLDI TGESLVPYAKDYFVQTIVMFLIVLGSIGFPVLLELKAYIKNRVTNFRFSLFTKITTTTYL FLFLFGVIVVLILEHSNAFKGLSWHQSLFYALFQSSTTRSAGLQTIDVSHFSDATNIVMG LLMFIGSSPSSVGGGIRTTTFAILILFVINFNNTGDKTGIKIFNREVHIMDVQRSFAVFT MASLITFISMIIISATEQGKLSFLQIFFEVMSAFGTCGLSLGVTSDINDITKVVLMILMF IGRVGLISFIIMLAGRKEPEKYSYPKERIQIG >gi|224999899|gb|ACJC01000101.1| GENE 9 10959 - 12464 1537 501 aa, chain + ## HITS:1 COG:SA0881 KEGG:ns NR:ns ## COG: SA0881 COG0737 # Protein_GI_number: 15926612 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 1 500 2 501 504 732 70.0 0 MEKNENKIVDVIATSDMHSHFLNGDYGSNIYRAGTYVNEARKNNENVILLDSGGSLAGSL AAFYYAVVAPYKRHPMIKLMNAMQYDASGISPNEFKFGLSFLTRSVALSRFPWLSANIEY TVTREPYFSTPYTIKMYSDLKIAIVGLTSDGLMKNEYAEMEEDVCIEKTLVSAKRWIRYI HEVEEPDFLIVIYHGGLNKISSTNKRNEKNANEAEKIMEELGVIDVIITAHQHQTVVGKD HETIYVQAGQNAEELVHLSIKFKKRTTSYEIEHIDSKVIDLNDYHEDEQLLKETYYDRKA VKHWANSVVSNKNNGLTVQCIEDIICKPHPFTQLLHDAIRLAYNYDISCVHIPKNGEEGL KGTIRNRDIYDAYPHPDKPIDITVKGKNIKDILEYSYAHIDFNKRQLSMTMIDETLFTVW QGFDYCIDMSQSPFNRVKLNGLNEEDSYRITMTDYCYRNYKMYLQEAIVHDTYSETMGGL IRKNLKCDTYSVKLNHNFKVY >gi|224999899|gb|ACJC01000101.1| GENE 10 12567 - 13169 329 200 aa, chain - ## HITS:1 COG:SA0885 KEGG:ns NR:ns ## COG: SA0885 COG1266 # Protein_GI_number: 15926617 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 1 200 1 200 200 251 82.0 4e-67 MKNVSKALIWFVISFIIFHAILFVMWGEHQEYWYLYTGIMLIAGISYVFYQRDIASKRLL TSIGMGIITSVALIIIQLIFSLISSELSYASLIKELSRTGVYFKWQMLVTLLFVIPCHEL YMRTVLQKELIKYNLPKWASILIVAICSSSLFIYLDNWWIVFFIFVAQFILSLSYEYTRR IATTTIGQIVAIILLLIFHG >gi|224999899|gb|ACJC01000101.1| GENE 11 13175 - 13360 360 61 aa, chain - ## HITS:1 COG:SAS027 KEGG:ns NR:ns ## COG: SAS027 COG4873 # Protein_GI_number: 15926616 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 58 1 58 58 91 93.0 4e-19 MTVAEVGNIVEFYDGLRGRVEKINDNSVIVDLTIMDNFNELDLPEKTVINHKRYKIVDQE G >gi|224999899|gb|ACJC01000101.1| GENE 12 13565 - 14551 878 328 aa, chain + ## HITS:1 COG:SA0884 KEGG:ns NR:ns ## COG: SA0884 COG0095 # Protein_GI_number: 15926615 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Staphylococcus aureus N315 # 1 328 1 328 328 558 85.0 1e-159 MKFISNNNINDPSINLAMEEYVLKNLPSEESYFLFYINRPSIIVGKNQNTIEEVNQSYID KHQIDVVRRISGGGAVYHDTGNLNFSFITDDDGHSFHNFKKFTMPIVQALQSMGVNAEMT GRNDIQVGQAKISGNAMVKVKNRMFSHGTLMLNCDLNEVQNALKVNPAKIKSKGVKSVRK RVANIEEFLEQPIDIEEFKQIILKTIFGENEVEEYVLTEEDWKNIKQLSNEKYRTWEWNY GSNPKYNIEREEKFEKGFIQIKLDVKKGRIERAKLFGDFFGEGDVTELEHALVGCLHDFE HIEEALQNYDFYHYFGDIDKYEIIRLMS >gi|224999899|gb|ACJC01000101.1| GENE 13 14629 - 14847 280 72 aa, chain - ## HITS:1 COG:no KEGG:SERP0617 NR:ns ## KEGG: SERP0617 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 72 1 72 72 107 100.0 1e-22 MNHNTEVKYTTLEDFVMTVNDLGVELVIEEALRNARKAKLKLLIDEALINKNENDFIQYT NEFKQLEAFLSE >gi|224999899|gb|ACJC01000101.1| GENE 14 15062 - 15637 394 191 aa, chain + ## HITS:1 COG:SA0882 KEGG:ns NR:ns ## COG: SA0882 COG4903 # Protein_GI_number: 15926613 # Func_class: K Transcription # Function: Genetic competence transcription factor # Organism: Staphylococcus aureus N315 # 6 190 4 188 189 286 76.0 2e-77 MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGN NYISKKAETNRITGISSKPPILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRK SKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRMKSNNPEQPIDYNQSSLNIFE ALSRYSLFEEN >gi|224999899|gb|ACJC01000101.1| GENE 15 16787 - 16972 121 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242242339|ref|ZP_04796784.1| ## NR: gi|242242339|ref|ZP_04796784.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 61 27 87 87 97 100.0 2e-19 MITSDNKFFSNQTLANKKFFEQAKEFLEQEYGKDNLLYAKLHMDKRLTCTLKLYQLQKMD D >gi|224999899|gb|ACJC01000101.1| GENE 16 16930 - 17166 205 78 aa, chain + ## HITS:1 COG:no KEGG:SE0732 NR:ns ## KEGG: SE0732 # Name: not_defined # Def: truncated pre protein # Organism: S.epidermidis # Pathway: not_defined # 1 76 1 76 83 116 96.0 3e-25 MHFEIVPITEDGRLSAKDVVGNKKALASFQDKFNEYVNERGYELERGTSIELTNRQHNQV NSYKQKTEYHKKEYEREG >gi|224999899|gb|ACJC01000101.1| GENE 17 17385 - 17606 197 73 aa, chain + ## HITS:1 COG:no KEGG:SE0733 NR:ns ## KEGG: SE0733 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 57 1 57 78 81 92.0 7e-15 MEDYECIKSVSALEDKEKEIREKDDLLNKAVECIENIDDNFNRLYEMAKPFKENVEIVLK LLKILLKELERVL >gi|224999899|gb|ACJC01000101.1| GENE 18 18026 - 18778 409 250 aa, chain + ## HITS:1 COG:Rv3554_1 KEGG:ns NR:ns ## COG: Rv3554_1 COG3239 # Protein_GI_number: 15610690 # Func_class: I Lipid transport and metabolism # Function: Fatty acid desaturase # Organism: Mycobacterium tuberculosis H37Rv # 1 240 89 317 335 61 26.0 2e-09 MHEACHRSLFTNKFWNKWIACLFVAFSVFTSYTAYCNSNFQHHRNLWDEENDPDTKRYRL VGLDKPQKSTKMFVKNHIVKVLLLFHVPKYIVGTVSANLYTKEVPKSEIWVKNIFWIAII TSSVIFNFWLYLILYWLIPILTTFQIIRYWAEMAEHSGLNNKSELTASRNTFGMPWTIFI FHPHHDNYHLVHHLFPAIPHYNLKKAHEILMKDTAYRNAHHCTGFFKTTLPGFYSVVKDI CTPNYERKES >gi|224999899|gb|ACJC01000101.1| GENE 19 19030 - 19398 427 122 aa, chain + ## HITS:1 COG:SA0753 KEGG:ns NR:ns ## COG: SA0753 COG1279 # Protein_GI_number: 15926478 # Func_class: R General function prediction only # Function: Lysine efflux permease # Organism: Staphylococcus aureus N315 # 1 121 84 204 205 112 57.0 2e-25 MYMAWSLWTEKPSNIEEIEPMPAKKQILFALSVSLLNPHAIMDTVGVIGTSASVYDGYDK VVFSLATISVSWIWFVFLAILGRITGKIDKSGKYIVILNKVSSVIVIIVGLIILKNIVGI LS >gi|224999899|gb|ACJC01000101.1| GENE 20 20278 - 20493 278 71 aa, chain - ## HITS:1 COG:SA0892 KEGG:ns NR:ns ## COG: SA0892 COG2314 # Protein_GI_number: 15926626 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 70 1 70 71 94 74.0 4e-20 MKVNKTIYIIVALILGGLGVHKFYADQVGQGILHLVFFWTGIPSVVAIIHAIIVIFTKKA DEYGYITFDKK >gi|224999899|gb|ACJC01000101.1| GENE 21 20652 - 21281 644 209 aa, chain + ## HITS:1 COG:SA0893 KEGG:ns NR:ns ## COG: SA0893 COG0454 # Protein_GI_number: 15926627 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 25 206 1 182 183 183 50.0 2e-46 MSYLFFYLEIEYKLSYQYLKGESKVIRKAKTSDNRQIAELCYLIWRDMELDITKEITKDR IIEAIELSIVNVRYRSFYEHIWVYEKDGVVAGCVIAYPGKEEMDYEQQWLKLPLEEDIIQ LGTPLPEKESYDDEIYIETVVTSPKYRGQGIATQLLKYVISTHAHEKWGLNCDYDNNKAR HLYHKLGFKEDATIHLYGHQYFHMTLNNK >gi|224999899|gb|ACJC01000101.1| GENE 22 21576 - 22514 1179 312 aa, chain - ## HITS:1 COG:SA0894 KEGG:ns NR:ns ## COG: SA0894 COG1575 # Protein_GI_number: 15926628 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Staphylococcus aureus N315 # 1 312 1 312 312 481 80.0 1e-136 MSDQYQQYSTVKKYWQLMRPHTLTAAVVPVLVGTAAAKIYLLGSEDHLKFSLFLAMLVAC LLIQAATNMFNEYYDFKKGLDDHTSVGIGGAIVRNGMSPKQVMNLAIAFYIIAALLGIFL AIQSSFWIIPVGIVCMAIGYLYTGGPIPISWTPFGELFSGLFMGMIIILLSFFIQTGNVQ GYAVWLSIPIVITIGLINMGNNIRDRIKDKASGRKTLPILLGKRASVIFMAMMYAVAYII VIITAFFKPAGSLFYLLVLLSFPMPIKAVRRFNKNDTPETMMPAMAATGKTNTFFGLLYA LGIYISALLGAI >gi|224999899|gb|ACJC01000101.1| GENE 23 22693 - 24054 1632 453 aa, chain + ## HITS:1 COG:SA0895 KEGG:ns NR:ns ## COG: SA0895 COG1169 # Protein_GI_number: 15926629 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Staphylococcus aureus N315 # 1 453 1 453 453 624 68.0 1e-179 MDVNIDEQAILDKLYESTKDWVSVEVELNKTMKPSVLFHLTEKDAGDRFYMRLNDNYSSY FGYHAIHRFKNDFENKQSIFKDWEKLKNNIELIHPHNRYHHLRLCGGFQFSSHKSDDEWR EYGLNHFVLPKVLISNEGTRTYLTYTTERQDFDLQAFKTLVAHFEQTTMDNPEETLGDVT RMEDIYKDDWRELVKEAIDTIDDNKKIVLARRRLVKFDKKINIPYVLNRALENEKNSYIF LLEANQSIFFSQTPEQLIKVEDGVLSTKAVAGTIKRTHNEQIDNKNIEAFLKDKKNLGEH RFVVESILNDIEPFVQDVEYNETPNILKNDHMYHLYTEIKANLNDESYIGLIDRLHPTPA LGGYPKEEALDFIENKEFGTRGLYGAPVGYIDVYDDCEFIVAIRSMLIKEQQATLYAGCG IVKNSNPDSEVAETAVKFSPMMNALGVDNNDES >gi|224999899|gb|ACJC01000101.1| GENE 24 24041 - 25714 1620 557 aa, chain + ## HITS:1 COG:SA0896 KEGG:ns NR:ns ## COG: SA0896 COG1165 # Protein_GI_number: 15926630 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Staphylococcus aureus N315 # 1 557 1 557 557 886 76.0 0 MMNHSEALTEQVFSFASELYAYGVREVVISPGSRSTPLALAFEAHPSIKTWIHPDERSAA FFALGLIKGSEKPVAILCTSGTAAANYTPAIAESQISRLPLVVLTSDRPHELRSVGAPQA INQVNMFSNYVNFQFDLPIADGSEHTIDTINYQMQIASQYLYGPHRGPIHFNLPFREPLT PDLNRVDLLTSVTKTLPHYQKSISIDDIKDILQEKNGLIIVGDMQHQAVDQILTYSTIYD LPILADPLSQLRKEKHPNVITTYDLLYRAGLNLEVDYVIRVGKPVISKKLNQWLKKTDAY QIIVQNNDQIDVFPTPPHISYEISANDFFRSLMEEPLVERKKWLQQWQSLEQQARIEISD YLKHATDEAAYVGSLIQKLTKEDTLFVGNSMPIRDVDNLLFDSEASVYANRGANGIDGVV STALGMAAHKNVTLLIGDLSFYHDMNGLLMAKLNELHINIVLVNNDGGGIFSYLPQKRSA TKYFERLFGTPTGLNFEYTALLYDFTFKRFDNLTDFKYAELSKMGSHMYEVMTNRDENLH QHQYLYQKLSEIVNVTL >gi|224999899|gb|ACJC01000101.1| GENE 25 25701 - 26504 695 267 aa, chain + ## HITS:1 COG:SA0897 KEGG:ns NR:ns ## COG: SA0897 COG0596 # Protein_GI_number: 15926631 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Staphylococcus aureus N315 # 1 267 1 267 267 323 58.0 2e-88 MLHYNFYESKNQSKQLLVMLHGFISDATTYHSHIEPLVEHTNVLTIDLPGHGLDTSSMDD VWDFPFITRQLDEVLIQYQTYDVFLLGYSMGGRVALYYAIHGNETLSGLLLESTSAGIQD ETDKEERAQVDAARAKVLEIAGLDIFVNDWEKLPLFRSQYNLAPEIRQSIRNNRMNQDAH RLAKALRDYGTGHMPNLWPHLSSIRIPTLIIVGEKDKKFVQIGQQLENHLQDSHKVQISN VGHTIHVEDSTEFDTIILGFLKEEQND >gi|224999899|gb|ACJC01000101.1| GENE 26 26497 - 27315 1056 272 aa, chain + ## HITS:1 COG:SA0898 KEGG:ns NR:ns ## COG: SA0898 COG0447 # Protein_GI_number: 15926632 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Staphylococcus aureus N315 # 3 272 4 273 273 542 95.0 1e-154 MTRQWETLREYDEIKYEFFEGIAKVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVI VLTGEGDKAFCSGGDQKKRGHGGYVGEDDIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGG GNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQ EALDMGLVNTVVPLEQVEDETVKWCKDIMQHSPTALRFLKAAMNADTDGLAGLQQMAGDA TLLYYTTDEAKEGRDAFKEKRNPDFDQFPKFP Prediction of potential genes in microbial genomes Time: Sun May 29 07:39:48 2011 Seq name: gi|224999898|gb|ACJC01000102.1| Staphylococcus epidermidis W23144 contig00142, whole genome shotgun sequence Length of sequence - 8537 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 5, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 165 - 221 -0.8 1 1 Tu 1 1/1.000 - CDS 369 - 1553 928 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 1631 - 1690 5.0 2 2 Tu 1 . - CDS 1696 - 2703 796 ## COG3594 Fucose 4-O-acetylase and related acetyltransferases - Prom 2736 - 2795 8.9 + Prom 2739 - 2798 7.9 3 3 Tu 1 . + CDS 2857 - 3276 444 ## COG1846 Transcriptional regulators + Term 3385 - 3424 -0.3 - Term 3452 - 3510 2.7 4 4 Tu 1 1/1.000 - CDS 3515 - 7522 4439 ## COG5632 N-acetylmuramoyl-L-alanine amidase - Prom 7700 - 7759 5.2 5 5 Tu 1 . - CDS 7762 - 8235 335 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 8423 - 8482 8.4 Predicted protein(s) >gi|224999898|gb|ACJC01000102.1| GENE 1 369 - 1553 928 394 aa, chain - ## HITS:1 COG:SA0902 KEGG:ns NR:ns ## COG: SA0902 COG0436 # Protein_GI_number: 15926636 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Staphylococcus aureus N315 # 1 381 1 381 384 618 77.0 1e-177 MKLSLNSSSKFLRAPSIRQFSNRIKAIDDCVNLTIGQPDFPMPDVVKNAYIKAIKNDKTS YSHNKGLFETRQAISQYFKRKYDFFYSEEEIIVTNGASEALDTSLRSIIEPGDDILIPGP IYAGYIPLIETLGGNPVYIDTTQSDFKVTPELIESHLTHKTKAILLNYPTNPTGVILERS EVKNIVDTLVNKQIFIISDEIYAENTFKGQHTSFAEFPEIRDQLLLIGGLSKSHSATGIR IGFLLGPEYLIEKLTFMHAYNCICANVPAQIACTTALNEGINAPLYMNRDYIERRNYLKE KLESLGFELTAQPEGAFYIFPSIKRFTENDFEFCVDVLEKAHLAMVPGSSFTDIGKGYIR ISYAYDMETLKKGMHRLENYLRQHYPDQMTTPTK >gi|224999898|gb|ACJC01000102.1| GENE 2 1696 - 2703 796 335 aa, chain - ## HITS:1 COG:SA0903 KEGG:ns NR:ns ## COG: SA0903 COG3594 # Protein_GI_number: 15926637 # Func_class: G Carbohydrate transport and metabolism # Function: Fucose 4-O-acetylase and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 335 1 335 336 418 69.0 1e-117 MTAIKDRDYFFDNARAILIFLVVLGHLLQPYTSEDKFLQALYLLIYSFHMPTFLFISGYF AKNLDKPNYLEKIAKKLLLPYVIFFAFFSLYYYFTGKEDAIQLDPFNPVFALWFLLTLFF FHVVLVIVRRYNPYIVLFISVLVSVLAGFSGNIDSYMSISRTIVFFPIFFIGHLVTQSHT EKLRNKKWIPISIIILITFFIGYTIHPINGDWLLGSTPYTSLESNGEDVYSPLKRLLLYV IILLTMCAFLNLMPQTKRIYTYIGQRTMFVYLLHGIVIGVIRGFGLYPFKDQISIFTYLY LFISASVIVLILSSKWVCKWTNPFINLKRPSQFKN >gi|224999898|gb|ACJC01000102.1| GENE 3 2857 - 3276 444 139 aa, chain + ## HITS:1 COG:SA0904 KEGG:ns NR:ns ## COG: SA0904 COG1846 # Protein_GI_number: 15926638 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 137 1 137 139 189 87.0 1e-48 MYKQLEKLITLTNNDLNLVNRRFGQRTDITSEQLELLRILYNYDRLSQYDLTMKISREQS IVSRWIKKLVQKGYIMSQQSHEDLRCKELILTEEARALIQQINTARCELIEARCQCLSSD EIASLNQLLNKLNSRHIFI >gi|224999898|gb|ACJC01000102.1| GENE 4 3515 - 7522 4439 1335 aa, chain - ## HITS:1 COG:SA0905_2 KEGG:ns NR:ns ## COG: SA0905_2 COG5632 # Protein_GI_number: 15926639 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Staphylococcus aureus N315 # 340 1170 1 849 849 951 65.0 0 MAKKFNYKLPSMVALTLFGTAFTAHQANAAEQPQDQSNHKNVLDDQTALKQAEKAKSEVT QSTTNVSGTQTYQDPTQVQPEQDTQSTTYDASLDEMSTYNEISSNQNQQSSSINDANQNQ TNSSTKNQQEETNDLTQEDKTSTDTNQLQETQSVADENEKDLETNASTEQQDKKMTASQP SENQAIETQTASNDNESQQKSQQVTSEQNETVTPKVSNTNASGYNFDYDDEDDDSSTDHL EPVSLNNVNATSKQTTSYKYKEPAQRVTTNTAKKETASNQATIDTKQFTPFSATAQPRTV YSVSSQKTSSLPKYTPKVNSSINNYIRKKNMKAPRIEEDYTSYFPKYGYRNGVGRPEGIV VHDTANDNSTIDGEIAFMKRNYNSAFVHAFVDGNRIIETAPTDYLSWGAGPYGNQRFINV EIVHTHDYDSFARSMNNYADYAATQLQYYNLKPDSAENDGRGTVWTHAAISNFLGGTDHA DPHQYLRSHNYSYAELYDLIYEKYLIKTGQVAPWGTTSTKPSQPSKPSGGTNNKLTVSAN RGVAQIKPTNNGLYTTVYDSKGHKTDQVQKTLSVTKTATLGNNKFYLVEDYNSGKKYGWV KQGDVVYNTAKAPVKVNQTYNVKAGSTLYTVPWGTPKQVASKVSGTGNQTFKATKLQQID KATYLYGTVNGKSGWISKYYLTSASKPSNPTKPSTNNQLTVTNNSGVAQINAKNSGLYTT VYDTKGKTTDQIQRTLSVTKAATLGDKKFYLVGDYNTGTNYGWVKQDEVIYNTAKSPVKI NQTYNVKPGVKFHTVPWGTYNQVAGTVSGKGDQTFKATKQQQIDKATYLYGTVNGKSGWI SKYYLTTPSKVQTLSTQSTPAPKQVQSSTQTVNQIAQVKANNSGIRASVYDKTAKSGTKY ANRTFLINKQRTEGNNTYVLLQDGTSNTPLGWVNINDVTTQNIGKQTQSIGKYSVKPTNN GLYSIAWGTKNQQLLAPNTLANQAFNASKAVYVGKDLYLYGTVNNRTGWIAAKDLIQNST DAQATPYNYTFVINNSKSYFYMDPTKANRYSLKPYYEQTFTVIKQKNINGVKWYYGQLLD GKYVWIKSTDLVKEKIKYAYTGMTLNNAINIQSRLKYKPQVQNEAWKWSNANYSQIKNAM DTKRLANDSSLKYQFLRLDQPQYLSAQALNKLLKGKGVLENQGAAFSQAARKYGLNEIYL ISHALVETGNGTSQLAKGGDVSKGKFTTKTGHKYHNVFGIGAFDNNALVDGIKYAKNAGW TSVSKAIIGGAKFIGNSYVKAGQNTLYKMRWNPASPGTHQYATDINWANVNAQVLKQFYD KIGEVGKYFEIPTYK >gi|224999898|gb|ACJC01000102.1| GENE 5 7762 - 8235 335 157 aa, chain - ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 18 157 1 140 144 146 53.0 2e-35 MVKIIFKGKTSENGGDTVFQITKNERMLEDCFEIRKCVFVEEQGVPLENEFDQYEDYSFH IVGYINGVPMATARIRSLNTHVCKIERVAIIKWYRGLGYGKKLIHAIETIAKKHQYNKLT MNAQLQARNFYLKLGYSPFGKVFLEENIKHISMNKFL Prediction of potential genes in microbial genomes Time: Sun May 29 07:39:57 2011 Seq name: gi|224999897|gb|ACJC01000103.1| Staphylococcus epidermidis W23144 contig00143, whole genome shotgun sequence Length of sequence - 26294 bp Number of predicted genes - 25, with homology - 25 Number of transcription units - 9, operones - 4 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 128 - 598 302 ## SERP0639 hypothetical protein 2 1 Op 2 . - CDS 646 - 1884 1191 ## COG1316 Transcriptional regulator - Prom 2005 - 2064 7.8 + Prom 2497 - 2556 7.7 3 2 Tu 1 . + CDS 2691 - 3893 1253 ## COG1680 Beta-lactamase class C and other penicillin binding proteins + Term 3897 - 3958 2.0 4 3 Tu 1 . - CDS 4049 - 4957 607 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase - Prom 4981 - 5040 5.1 - Term 5063 - 5114 9.1 5 4 Op 1 16/0.000 - CDS 5138 - 5428 271 ## COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4 6 4 Op 2 20/0.000 - CDS 5425 - 6030 714 ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 7 4 Op 3 25/0.000 - CDS 6020 - 8008 1797 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 8 4 Op 4 . - CDS 8008 - 8994 1086 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 - Prom 9179 - 9238 8.6 - Term 9544 - 9595 7.2 9 5 Tu 1 . - CDS 9669 - 9986 357 ## SERP0647 chitinase-related protein - Prom 10087 - 10146 9.7 - Term 10308 - 10344 1.4 10 6 Tu 1 . - CDS 10360 - 11220 1051 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase - Prom 11249 - 11308 8.7 + Prom 11212 - 11271 6.7 11 7 Op 1 29/0.000 + CDS 11443 - 11907 449 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase 12 7 Op 2 1/0.600 + CDS 11894 - 13021 1123 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 13 7 Op 3 15/0.000 + CDS 13022 - 13726 541 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 14 7 Op 4 23/0.000 + CDS 13726 - 13986 408 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 15 7 Op 5 9/0.000 + CDS 13988 - 14659 750 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 16 7 Op 6 10/0.000 + CDS 14652 - 16841 2292 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 17 7 Op 7 13/0.000 + CDS 16820 - 18304 1773 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 18 7 Op 8 21/0.000 + CDS 18297 - 19328 873 ## PROTEIN SUPPORTED gi|126667548|ref|ZP_01738518.1| Ribosomal protein S7 19 7 Op 9 10/0.000 + CDS 19328 - 19894 445 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 20 7 Op 10 17/0.000 + CDS 19911 - 21389 1832 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 21 7 Op 11 . + CDS 21415 - 22656 1208 ## COG0151 Phosphoribosylamine-glycine ligase + Term 22682 - 22727 11.4 - Term 22668 - 22715 10.2 22 8 Op 1 34/0.000 - CDS 22790 - 23629 590 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 23 8 Op 2 4/0.000 - CDS 23589 - 24992 1221 ## COG1122 ABC-type cobalt transport system, ATPase component 24 8 Op 3 . - CDS 25006 - 25581 633 ## COG4721 Predicted membrane protein - Prom 25733 - 25792 6.4 + Prom 25923 - 25982 10.2 25 9 Tu 1 . + CDS 26099 - 26294 201 ## COG4716 Myosin-crossreactive antigen Predicted protein(s) >gi|224999897|gb|ACJC01000103.1| GENE 1 128 - 598 302 156 aa, chain - ## HITS:1 COG:no KEGG:SERP0639 NR:ns ## KEGG: SERP0639 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 156 1 156 156 311 98.0 7e-84 MSRKTYEKIASINGMFNVLEQQIIHSKDMALFRNEFFYVNHEHRENYEALLIYYKDSLDN PVVDGACYILALPEIFNKVDVFESDLPFTWVYDENGLTDTMKSISVPLQYLIAAALEVTD VNIFKPSGFTMGMNNWNIAQLRIFWQYCAIVRKEAL >gi|224999897|gb|ACJC01000103.1| GENE 2 646 - 1884 1191 412 aa, chain - ## HITS:1 COG:SA0908 KEGG:ns NR:ns ## COG: SA0908 COG1316 # Protein_GI_number: 15926642 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 404 1 405 405 525 75.0 1e-149 MNKFLKYFLILLSFGLLVVPIIFATQLYQSSESAFESSQNTKDSQRKSTLRDTKVDPEKQ PISILFLGIDDNEGREKNGQSVEHSRSDAMILSTFNQKKHQIRMLSIPRDTISYIPKVGY YDKITHAHAYGGPLAAMDSVEATMNVPVDYYVRINMKAFVEAVDELGGIYYDVPYNLNEP NSDDTGRIKIKKGYQKLNGDQALAVARTRHHDSDLKRGQRQMELIKILFQKAQNLNSIDK LDNVISIVGKNAKHNLTQKEIKSLAKMYLGGNTEIKTSQLKGKDDYLNDIYYYHPSVKSI MEYSNLLRNDLGLSKITNKNDFLDQRVIKRYGSLVPLTELDEDLLRKNQKESTDSQKESS SSSQNNDEEDQTNEQTDQNTLNGNEQYPNQQYNNQDNGENGMINNDNYPYAQ >gi|224999897|gb|ACJC01000103.1| GENE 3 2691 - 3893 1253 400 aa, chain + ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 1 400 1 397 397 434 57.0 1e-121 MKLNKFKIVFFIIVLLTLVVSIGILGVEWTRHLELKKQTLSQESGNTNYIEKRDKTAEKP KKLKTKYDKKDPISKSINKYLEKTQFNGTVAVFDNGKVKMNKGYGYQDIEKGKKNTANTM YLIGSAQKFTTGLMLKQLEVENKVNLQDSVTKYIPWFKTNKEITIKDLMLHKSGLYKYEA STNIKNLEQAVRAIQARGIDDTVYHKHQYNDANYLVLAKVIENVTGKPYVKNYYERLGNK YNLKHTAFYDEKPLQSEMAKGYKFKNNTFSFLKPNILDQYYGAGNLYMTPHDMGKLIYTL QQNKIFNARQTRPILHEFGTQEYPEEYRYGFYITPYLNRVNGVFFGQIFTVYFNDRYIVI LGTNVSNTPGLVSNENKMRHIFYNILDQKKPYNTAGVKVE >gi|224999897|gb|ACJC01000103.1| GENE 4 4049 - 4957 607 302 aa, chain - ## HITS:1 COG:yaaF KEGG:ns NR:ns ## COG: yaaF COG1957 # Protein_GI_number: 16128024 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1 273 1 272 304 258 47.0 1e-68 MSIPIIIDTDPGIDDATAISIALSHPQFDVKMISTVNGNVGIEKTTANALKLKKFFNSSV PVHRGASQPLINDIFGATSIHGESGMDGYNFPQINQDDLTSIHAVEAMRNLLVNTQEPLT LIAIGPLTNIAILLTSYPEVQPFIKEIVLMGGSTGRGNVTPLAEFNIYCDPEAAQIVFNS GLPLTMIGLDLAREALFTHHFVKDFKDTNATSSMLYNLFQHYKSEDFDIGFKLYDVFTIL YLLDPEAFNVKEAYTQIELSGNFTRGATVVDFNTEYPNCTVVLSPVERQYEDLFLNALSY CK >gi|224999897|gb|ACJC01000103.1| GENE 5 5138 - 5428 271 96 aa, chain - ## HITS:1 COG:SA0910 KEGG:ns NR:ns ## COG: SA0910 COG3125 # Protein_GI_number: 15926644 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 4 # Organism: Staphylococcus aureus N315 # 1 96 1 96 96 123 85.0 9e-29 MNTIVKHTVGFIASIVLTLLAVFVTLYTNMTFHAKVTIIFGFAFIQAALQLLMFMHLTEG KDGRLQSFKVIFAIIITLITVIGTYWVMQGGHSSHL >gi|224999897|gb|ACJC01000103.1| GENE 6 5425 - 6030 714 201 aa, chain - ## HITS:1 COG:SA0911 KEGG:ns NR:ns ## COG: SA0911 COG1845 # Protein_GI_number: 15926645 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Staphylococcus aureus N315 # 1 201 1 201 201 327 91.0 6e-90 MSHDANTIDSRTHEGELNKLGFWIFLTAEFALFGTLFATLLTLQHGGGYGGKLTTDLFEL HLILIMTFALLISSYTCGIAIYYMRQEKQNLMMFWMIITVILGLVFVGFEIYEFAHYASE GVNPTIGSFWSSFFILLGTHGAHVSLGIVWVICLLIQIGTRGLDSYNAPKLFIVSLYWHF LDVVWVFIFTAVYMIGMVYSG >gi|224999897|gb|ACJC01000103.1| GENE 7 6020 - 8008 1797 662 aa, chain - ## HITS:1 COG:SA0912 KEGG:ns NR:ns ## COG: SA0912 COG0843 # Protein_GI_number: 15926646 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Staphylococcus aureus N315 # 1 662 1 662 662 1191 93.0 0 MNFPWDQLLVKGNWMIISAQIAAPFLVIGLIAVISYFKLWKYLYKEWFTSVDHKKIGIMY LISAVLMFVRGGIDALMLRTQLTIPDNKFLEANHYNEVFTTHGVIMIIFMAMPFIFGLWN VVIPLQLGARDVAFPVMNNVSFWLFFAGMILFNLSFIVGGSPAAGWTNYAPLAGEFSPGP GVNYYLIAIQISGIGSLMTGINFFVTILRCKTPTMKFMQMPMFSVTTFITTLIVILAFPV FTVALALMTADRIFGTQFFTVANGGMPMLWANFFWVWGHPEVYIVILPAFGMYSEIIPTF ARKRLFGHQSMIWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGVPTGVKLFN WLLTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLVAHFHYTLV TGVVFACLAGLIFWYPKMMGYKLNETLNKWCFWFFMIGFNVCFLPQFILGLDGMPRRLYT YMPSDGWWLLNFISTIGALLMAIGFLFLVASIVYSHIKAPREATGDNWDGLGRTLEWSTA SAIPPKYNFAITPDWNDYDTFVDMKEHGRHYLDNHNYKDIHMPNNTPVGFWMGIFMTIGG FFLIFESIVPALICLAGIFITMIWRSFQIDHGYHIPASEVAETEARLREARIKEREAVSH ES >gi|224999897|gb|ACJC01000103.1| GENE 8 8008 - 8994 1086 328 aa, chain - ## HITS:1 COG:SA0913 KEGG:ns NR:ns ## COG: SA0913 COG1622 # Protein_GI_number: 15926647 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Staphylococcus aureus N315 # 1 328 47 366 366 535 80.0 1e-152 MLVIVAVVLSMFAIFIFKYSYKKNSESGKMHHNSLIETIWFVVPILIVIALAIPTVKTLY DYEKPPEKDKDPLVVYAVSAGYKWFFAYPDQHIETVNTLTIPKDRPVVFKLQSMDTMTSF WIPQLGGQKYAMTGMTMNWTLTADQLGTFRGRNSNFNGEGFSRQTFKVHSVSQNDFDKWV KEAKGKKTLSQDTFDKQLLPSTSNKELTFSGTHMAFVDPAADPEYIFYAYKRYNFEQKDP NFTAEEDLYKDVKDKPIKPARKVHITNPNYERHGMKPMILGNNEKYDNEFKKEEDHNSKE MEKISKGAKDENASKLHKKEHDDHGGGH >gi|224999897|gb|ACJC01000103.1| GENE 9 9669 - 9986 357 105 aa, chain - ## HITS:1 COG:no KEGG:SERP0647 NR:ns ## KEGG: SERP0647 # Name: not_defined # Def: chitinase-related protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 105 1 105 105 171 100.0 8e-42 MNKLLQSLSALGVSATLVTPNLNAEATTNTEPQLKGVNDIVIEKGQEYNLLKGISAYDKE DGDLTHKIKIDGQVDTSKAGKYKVKYQVTDSDGAEKTSIRNIEVK >gi|224999897|gb|ACJC01000103.1| GENE 10 10360 - 11220 1051 286 aa, chain - ## HITS:1 COG:SA0915 KEGG:ns NR:ns ## COG: SA0915 COG0190 # Protein_GI_number: 15926649 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Staphylococcus aureus N315 # 1 284 1 284 286 455 86.0 1e-128 MVAKILDGKQIAKEYRQRLKNQVNELKEHGFTPKLSVILVGNDGASQSYVKSKKKAAEKI GMISEIVHLDESTSEEEVLSELNRLNNDDTVSGILVQVPLPKQVSEQKVLETINPNKDVD GFHPINIGKLYIDEQTFVPCTPLGIMEILKHADINLEGKNAVVIGRSHIVGQPISKLLLQ ANATVTILHSRTKNMNAHLKQADVIVSAVGQPGLVTKENVKAGAVIIDVGNTPDENGKLK GDVAYDEVKEIASAITPVPGGVGPLTITMVLNNTLLAEKLRRGLTK >gi|224999897|gb|ACJC01000103.1| GENE 11 11443 - 11907 449 154 aa, chain + ## HITS:1 COG:SA0916 KEGG:ns NR:ns ## COG: SA0916 COG0041 # Protein_GI_number: 15926650 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Staphylococcus aureus N315 # 1 154 7 160 160 190 78.0 7e-49 MGSSSDWKIMKESCSMLEEFEIPYEKKVVSAHRTPQMMFNFARQARQNGFDIIIAGAGGA AHLPGMVASMTTLPVIGVPIESKSLKGLDSLLSIVQMPGGIPVATTAIGKSGAKNAGILA ARMLGITNESVQNNLENYEKYLVAKVEEMQNELQ >gi|224999897|gb|ACJC01000103.1| GENE 12 11894 - 13021 1123 375 aa, chain + ## HITS:1 COG:SA0917 KEGG:ns NR:ns ## COG: SA0917 COG0026 # Protein_GI_number: 15926651 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Staphylococcus aureus N315 # 1 374 1 374 374 562 74.0 1e-160 MNFSKLKFGATIGIIGGGQLGKMMAQSAQKMGYKVIVLDPNEDCPCRYVAHQFIHANYDD EQALNQLGENSDVVTYEFENISSEQLKKLTQLYHIPQGYQAIELLQDRLTEKQTLLEANT QIVPFIQIQTNQDLLKAIDKLGFPFIVKTRFGGYDGKGQILIRDDSELDEVYQLVEKQEC VAEQYLDIKKEVSLTVTIGNEQQTTYFPLQENEHQNQILFKTVVPARTDKEYEARKEVEK ITRAIHFVGTFTVEFFIDKEDNLYVNEIAPRPHNSGHYSIEACDYSQFDTHILAITGQKL PQAIELLKPTVMMNLLGRDLDLLENEFSRHPDWHIHIYGKKERKPDRKMGHMTLLTDDVN QTEQYMLMKFEGRDK >gi|224999897|gb|ACJC01000103.1| GENE 13 13022 - 13726 541 234 aa, chain + ## HITS:1 COG:SA0918 KEGG:ns NR:ns ## COG: SA0918 COG0152 # Protein_GI_number: 15926652 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 340 78.0 2e-93 MSLLYEGKAKRVFTTNIDGQLRVEYKDEVTAGNGAKKDTMIGKGKLNNQITSIIFDYLTH NHIDNHFIKQLSQTEQLVQQVDIIPLEVVVRNIATGSITKRLGFKKGHKFEEPLVEFFYK KDELNDPLITDDHVKLLGIVNDEEITQLKQMAKDINQVLIQLMNEMSLRLVDFKVEFGKT NSGKILLADEISPDTCRIWDKNTDTNFDKDVYRNNTGSLIETYQTFLNKLEDLK >gi|224999897|gb|ACJC01000103.1| GENE 14 13726 - 13986 408 86 aa, chain + ## HITS:1 COG:SA0919 KEGG:ns NR:ns ## COG: SA0919 COG1828 # Protein_GI_number: 15926653 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Staphylococcus aureus N315 # 1 85 1 85 87 123 84.0 1e-28 MKTIELHITLQPQVLDTQGQALNRAVHDLGYEQVNDIRVGKVLYMTVNEPTDEAVDNIIT TLSEKLFANTVIEEYSYKVIDEKEQA >gi|224999897|gb|ACJC01000103.1| GENE 15 13988 - 14659 750 223 aa, chain + ## HITS:1 COG:SA0920 KEGG:ns NR:ns ## COG: SA0920 COG0047 # Protein_GI_number: 15926654 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Staphylococcus aureus N315 # 1 223 1 223 223 412 86.0 1e-115 MKFAVLVFPGSNCDRDMYNAAIKSGVDAAYVDYRETTLDGFDGVLIPGGFSFGDYLRSGA MASVAPIIKEVKRFAKEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNENLKITN NQTPFTHLYMKNENVVYPVAHGEGHYYCTDEIYRELNDNNQIILKYTNNPNGSYEDIAGI VNKEGNVCGMMPHPERALETLLGTNSGVKLFESMVKSWREQNV >gi|224999897|gb|ACJC01000103.1| GENE 16 14652 - 16841 2292 729 aa, chain + ## HITS:1 COG:SA0921 KEGG:ns NR:ns ## COG: SA0921 COG0046 # Protein_GI_number: 15926655 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Staphylococcus aureus N315 # 1 729 1 729 729 1268 87.0 0 MSKFIEPSNEEIKLEKLYQDMGLSDKEYDKVVEILGREPNFTEVGIFSVMWSEHCSYKHS KPFLKQFPTTGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGII RDIVSIGARPINLLNSLRFGELTVKQNQRLLKGVVSGIGGYGNCIGIPTTAGEIEFDERY DGNPLVNAMCVGIIDHDMVQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESK RPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLDQ VPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFNKHELDSAVIGEVTDTDRFVLT YDDEVYADIPVQPLADEAPVYILEGEEKEYNTSKNDYSDIDVHDTFIKLLQHPTIASKHH LYEQYDQQVGANTIIKPGLQASVVRVEGTQKAIASTIDGEARYVFNQPYEGGKMVVAEAY RNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMSEACEVLQTPVVSGNVSLYNET RGTSIFPTPVVGMVGLIEDVSYLKEFKPKAGDKIYLVGETRDDFGGSQLEKLLYGSVNHE FESIDLSDEISKGKSIKQAIRNGIASHVQTVGKGGLLVTLAKISAHYDLGMQAQLDVTNA QLFSETQGRYIVIVKEGQTLDIDQAQEIGQLTHQQSFDISNSDVKIKENVSDIKQKWEGA IVQCLTTQD >gi|224999897|gb|ACJC01000103.1| GENE 17 16820 - 18304 1773 494 aa, chain + ## HITS:1 COG:SA0922 KEGG:ns NR:ns ## COG: SA0922 COG0034 # Protein_GI_number: 15926656 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Staphylococcus aureus N315 # 1 494 1 494 494 909 91.0 0 MSNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSNHETLKGERGLGLL TEAIKDEHMSNIKGYPHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKS LRQNLEEQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRLIKGGFTFAILTKDALYG AVDPNAIRPLVVGKMENGAYILASETCAIDVLGAEFVQDIHAGEYVVITDEGIEVKTYTR QTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKRLAQENPAKADMVIGVPNSSLSAAS GYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKDIVLVDDSIV RGTTIKRIVKMLKDSGANRIHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKNHIG ADSLAYLSVDGLIESIGLDYDAPYHGLCVESFTGDYPAGLYDYEKNYKKHLSERQKSYIA NNKHYFDSEGNLHV >gi|224999897|gb|ACJC01000103.1| GENE 18 18297 - 19328 873 343 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126667548|ref|ZP_01738518.1| Ribosomal protein S7 [Marinobacter sp. ELB17] # 2 329 7 333 354 340 52 4e-93 MSKAYEESGVNIQAGYEAVERITSHVERTLRKEVLGGLGGFGATFDLSQLNMKAPVLVSG TDGVGTKLKLAIDYGKHDTIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPSTIEQIV KGISDGCEQTNTALIGGETAEMGEMYHEGEYDIAGFAVGAVEKEDYIDGSNVEEGQAIIG LASNGIHSNGYSLVRKMIKESGVQLHDQFNGQTFLETFLAPTKLYVKPILELKKHVDIKA MSHITGGGFYENIPRALPKGLSAKIDTQSFPTLEVFDWLQKQGNISTNEMYNIFNMGIGY IVIVDKKDVQTTLTTLRAMDTTAYEIGEIIKDDDTPIHLLEVE >gi|224999897|gb|ACJC01000103.1| GENE 19 19328 - 19894 445 188 aa, chain + ## HITS:1 COG:SA0924 KEGG:ns NR:ns ## COG: SA0924 COG0299 # Protein_GI_number: 15926658 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Staphylococcus aureus N315 # 1 188 1 188 188 288 72.0 3e-78 MTNIAIFASGSGSNFENIVKHIQSGQLSGINVTALYTDNEGVPCIDRAKNLNIPIHINKP KDFSSKSLYEQHLLKLLSSEEVQWIVLAGYMRLIGQDLLQAYEGRILNIHPSLLPKFKGL DAIGQALESGDTVTGSTVHYVDSGMDTGEIIEQQQCDIKPDDTKVQLEDRVKHLEYELYP RVIAKIIK >gi|224999897|gb|ACJC01000103.1| GENE 20 19911 - 21389 1832 492 aa, chain + ## HITS:1 COG:SA0925 KEGG:ns NR:ns ## COG: SA0925 COG0138 # Protein_GI_number: 15926659 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Staphylococcus aureus N315 # 1 492 2 493 493 794 80.0 0 MKKAILSVSNKSGIVEFAKALTNLDYELYSTGGTKRVLEDANINIKSVSELTQFPEIMDG RVKTLHPAVHGGILADRDKERHLEQLREQHIDLIDMVVVNLYPFQQTVAQPEVTETDAIE NIDIGGPTMLRAAAKNFKHVTTIVHPSDYNEVIERIKNQQLDEAYRKSLMVKVFQHTNEY DHAIVNYFKDNKETLRYGENPQQSAYFVRTSDSKHTIAGAKQLHGKQLSFNNIKDADAAL SLVKKFNEPTAVAVKHMNPCGVGIGQSIDEAFQHAYEADNQSIFGGIIALNRTVDVKLAE ALHSIFLEVIIAPQFTEEALKILTQKKNIRLLQIDMTIDNAEQEFVSVSGGYLVQDKDNK DVTRNDMTIATDTQPTEAQWEAMLLGWKVVSAVKSNAVILSNNKQTVGIGAGQMNRVGSA KIAIERAIEINDNVALVSDGFFPMGDTVEYAAEHGIKAIIQPGGSIKDQDSIDMANKYGI TMVMTGMRHFKH >gi|224999897|gb|ACJC01000103.1| GENE 21 21415 - 22656 1208 413 aa, chain + ## HITS:1 COG:SA0926 KEGG:ns NR:ns ## COG: SA0926 COG0151 # Protein_GI_number: 15926660 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Staphylococcus aureus N315 # 37 411 1 376 379 547 70.0 1e-155 MKVLIVGAGGREHALASKINQSPIVDKVYAIPGNDAMVNIAEVHGEIAESDHQAILHFAQ HNAIDWVIIGPEQPLIDGLSDLLRNANIKVFGPGQDAAQIEGSKLFAKQLMDKYHIPTAE YKEVSSRNEALQYVETCDLPIVIKKDGLAAGKGVIIAFTREDALEGVKTIYKEEKGKVVF ESYLEGEEFSLMTFVNGDYAVPFDCIAQDHKRAFDNDQGPNTGGMGAYCPVPHIDASVLE QTNKEIAQPIAKAMAQEGHDFFGLLYIGAILTKDGPKVIEFNARFGDPEAQVLLTRLESD LMQLIIDLENCKPIHFNWKDEAVVGVMLASKGYPGTYEKGHEISGFNLDSHYYVSGLKKE GQCFVNSGGRVILAIGEGPTVEKAQANAYEHARQIKSDNLFYRNDIGNKAITK >gi|224999897|gb|ACJC01000103.1| GENE 22 22790 - 23629 590 279 aa, chain - ## HITS:1 COG:SA0927 KEGG:ns NR:ns ## COG: SA0927 COG0619 # Protein_GI_number: 15926661 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 12 278 1 267 268 330 74.0 2e-90 MGVLKKWKVNTLFERWKKRHTFVDDVNIITKLLLGIALFFFIIFIHNFDFMIYIVILMFM FLLLFNGTEFKITAIFILVTTLFALMSSLFMILYGDGEHMLVKFGILQISTESIVRGLHL SMRTITVSMFGILIALTSQIVMIFYSLMQHLKVKPKFAYAFMAAIRMVPLIISSLIQLRR SLKMRYQMIDASNYKGIKRLNHLVIPLLSQNIRRAHQLSVAMESKGFKDGPRTYYYRVPF SYKDIIFVACILIIITLSFVLSSYLPITGIHDVRFGQLD >gi|224999897|gb|ACJC01000103.1| GENE 23 23589 - 24992 1221 467 aa, chain - ## HITS:1 COG:SA0928 KEGG:ns NR:ns ## COG: SA0928 COG1122 # Protein_GI_number: 15926662 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 464 1 463 466 672 71.0 0 MLRVKNLRLKYPNGDRKIFDNLNLEIKNKEKVLLLGPSGSGKSTLLNVLSGIVPNLIELP MKYDELNIDHDSGVIFQDPDTQFCMPKVYEELAFVLENRNIPRSEMDQEIEDALKSVDLN VTHKTYVNNLSGGMKQKLAIVETILQKSKTLFLDEPTAMLDVKATEDLWKKLINLWEDQT VLIVEHKVEHIWQHVDRVLLLNYDGQIVADDTPEQILDHYEALLTEYGVWHPRAWQSAPR PIPLPNQTKNLLFHFDDGQIIRGKKTLFSSKELKLYSGEWLTITGKNGAGKTSLLEAMLQ LIKYEGNMFYRDQLLSKIKQAAKHMYLVYQNPELQFITNSVYDEVYIHYNHLDPKHANDE TMDLLKLLHLDQVKDHHPFEISTGQKRRLSVATALSSKAEIILLDEPTFGLDSHNTFQLI KLFQERVNQGQTIIMVTHDPEIIKRYPTRRLRVEDGCLKEMEGEHIV >gi|224999897|gb|ACJC01000103.1| GENE 24 25006 - 25581 633 191 aa, chain - ## HITS:1 COG:SA0929 KEGG:ns NR:ns ## COG: SA0929 COG4721 # Protein_GI_number: 15926663 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 191 1 191 191 284 80.0 6e-77 MSKGLKLSEILVTVLISVVFAIIYNLWWFVYNIVQVAGIHLEQLTYGVWFMAAVVCYLII PKPGIALLAEIAAGAGETIVMGKFDIPTIIYAILQGLACEIIFAIFKYKSRSAAVAMLAG LATALISFPVDYFYGYLNEVAGWNLLLFIIFRSISGIVLAGLVSYWIVKALDKTGVTKFF RPASQQDYDNL >gi|224999897|gb|ACJC01000103.1| GENE 25 26099 - 26294 201 65 aa, chain + ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 65 1 65 591 116 83.0 1e-26 MYYTNSNYEAFARPKKPENVDSKSAYLIGSGLASLAAACFLIRDGQMKGENIHILEELDI SGGSL Prediction of potential genes in microbial genomes Time: Sun May 29 07:40:07 2011 Seq name: gi|224999896|gb|ACJC01000104.1| Staphylococcus epidermidis W23144 contig00144, whole genome shotgun sequence Length of sequence - 11846 bp Number of predicted genes - 11, with homology - 10 Number of transcription units - 8, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 1015 852 ## COG4716 Myosin-crossreactive antigen + Term 1125 - 1169 0.1 - Term 1290 - 1338 12.1 2 2 Tu 1 . - CDS 1432 - 1566 217 ## - Prom 1798 - 1857 7.4 + Prom 1533 - 1592 8.7 3 3 Tu 1 . + CDS 1718 - 3010 971 ## SERP0666 hypothetical protein + Term 3037 - 3090 -0.8 + Prom 3178 - 3237 5.3 4 4 Op 1 . + CDS 3318 - 4490 315 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative 5 4 Op 2 . + CDS 4550 - 5089 622 ## SERP0668 hypothetical protein + Prom 5124 - 5183 4.9 6 5 Op 1 25/0.000 + CDS 5245 - 5511 432 ## COG1925 Phosphotransferase system, HPr-related proteins 7 5 Op 2 . + CDS 5514 - 7232 2148 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) + Term 7282 - 7347 8.4 - Term 7278 - 7323 1.8 8 6 Tu 1 . - CDS 7498 - 7734 325 ## COG0695 Glutaredoxin and related proteins - Prom 7760 - 7819 7.9 9 7 Op 1 31/0.000 + CDS 7939 - 9294 1491 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 10 7 Op 2 1/1.000 + CDS 9291 - 10307 944 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 + Term 10317 - 10353 4.2 11 8 Tu 1 . + CDS 10363 - 11022 1027 ## COG0569 K+ transport systems, NAD-binding component Predicted protein(s) >gi|224999896|gb|ACJC01000104.1| GENE 1 2 - 1015 852 337 aa, chain + ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 337 255 591 591 513 70.0 1e-145 LDSTSSTKIAREILVNKNGKTESIPLTVNDLVFVTNGSITESSTYGDNDHPAPITHSLGG SWTLWKNLANQSPEFGRPEKFCDHIPAKSWFVSATATTDNKKIISYIEQLCKRDVLSGRT VTGGIISVANSSWQLSFTVNRQQQFKEQPKDQVSVWIYALYSDVKGDFIKKPITECTGSE ICQEWLYHMGVPQEEIVELAQSECNTIPVYMPYITAYFMPRAYKDRPLVVPNGSKNLAFI GNFAETERDTVFTTEYSVRTAMEAVYQLLDVDRGVPEVYASEFDARVLMDAFYELNDRRS LHELVNKNFIKRSVLNTVLKKIRGTFIEELLRKHKLL >gi|224999896|gb|ACJC01000104.1| GENE 2 1432 - 1566 217 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTNKEFEKKSAEKAKEVEEKLKEQNEEKTDDIEQTKKDIQDTLD >gi|224999896|gb|ACJC01000104.1| GENE 3 1718 - 3010 971 430 aa, chain + ## HITS:1 COG:no KEGG:SERP0666 NR:ns ## KEGG: SERP0666 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 430 1 430 430 699 99.0 0 MSFLRKHTEIIFSYIIGIVSLFTGLIIFINLPLIKQFKGDKKVDTHVHNVWEFLNAFFAE IIKVMSKFIGGFPITSAIVIIVFGILVMLLGHTLFRTIKYDYDISIFFLVIGIMYFIITL LLMTQVYGFFAIVFIIPFTVHIGYIVYKDELNQANRKNHYMWIIVTYGMSYLITQISLYG RIDANEIESIDILSVNTFFIIMWLLGQMAIWNFLFLRRSLPLTKEELGEEEPELSRTNKG NVSNQTKVHLKQLQDKTTEYARKTKRSVDLDKIRAKRDKFKQKINSIVDIQEDDIPNWMK KPKWVKPMYVQLFCGVIILFFAFLEFNNRNALFLTGEWELSQTQYVVEWVTLLLLLFIII IYIATTLTYYLRDKYYYLQLFMGSILFFKFLTEFINIMVHGLLLSIFITPILLLMLIAMI VAYSLQLREK >gi|224999896|gb|ACJC01000104.1| GENE 4 3318 - 4490 315 390 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 32 390 33 394 396 125 26 1e-28 MKLATLNKGKEIKYLNHYPLIDEEDLFEHDHLKEGDLITLVTEQQQYIATGYIGRQHKGL GWVLSYNQNEEINTLFFRRLFEAALKERQYYFNIEGTNAFRLFNAEGDGVGGLTIDNYNG HLLIQWYSKGIYKFRFPILEAIKEVYEYTSIFEKMRFKGSSYTGGFVEGNAPEFPIVIEE NFTFYNVDLNDGLMTGIFLDQKEVRKKLRDQFSERRHVLNLFSYTGAFSVIAAENANSTT SVDLANRSRGLTEENFGLNGINPKSQYIYVMDTFDFYNYAGRHGHQYDTIVIDPPSFARN KKKTFSVQKDYNLLIEGALNILSPGGTLLLCTNSSAFSLKAFKNVIKKTLAQNNIEYEIN EVMGLPKDFKTHPHYKPSKYLKAVFVTIKN >gi|224999896|gb|ACJC01000104.1| GENE 5 4550 - 5089 622 179 aa, chain + ## HITS:1 COG:no KEGG:SERP0668 NR:ns ## KEGG: SERP0668 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 179 1 179 179 328 100.0 5e-89 MGIRSKLTNNITNKVGNSLLNIEEIKEKGDLPTTQEELRQRRERAETLVKKKSLLSSGAS IVPIPGLDFGVDLKLMRDIIEDVNKIYGLDHDQVNSLSDQVKERIMSAAAIQGSQFIGRK VSEALLKVVIKDVAKRAAAKQTKWFPFVGQAVSASISYYFMSKLGKDHINKCEKVINNL >gi|224999896|gb|ACJC01000104.1| GENE 6 5245 - 5511 432 88 aa, chain + ## HITS:1 COG:SA0934 KEGG:ns NR:ns ## COG: SA0934 COG1925 # Protein_GI_number: 15926669 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Staphylococcus aureus N315 # 1 88 1 88 88 138 92.0 2e-33 MEQKSYVITDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAE ITIYADGSDETDAIQSITDVLSKEGLAE >gi|224999896|gb|ACJC01000104.1| GENE 7 5514 - 7232 2148 572 aa, chain + ## HITS:1 COG:SA0935 KEGG:ns NR:ns ## COG: SA0935 COG1080 # Protein_GI_number: 15926670 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Staphylococcus aureus N315 # 1 572 1 572 572 986 88.0 0 MSKLIKGIAASDGVAIAKAYLIVEPDLSYDSNEKVTDTESEVDKFNDAIEASKIELTKIR NNAEAQLGADKAAIFDAHLLVLDDPELIQPIQDKIRNDKVNAATGLDEVTTQFISIFESM DNEYMKERAADIRDVSKRVLAHILGVDLPNPSLINESAVIVGNDLTPSDTAQLNKEFVQG FVTNIGGRTSHSAIMSRSLEIAAVVGTKSITEEVKQGDMIIVDGMSGDVIIDPTEDELIA YQNKRERFFEDKKELQKLRDADTVTVDGVHAELAANIGTPDDLSGVIDNGAQGIGLYRTE FLYMGRDQMPTEEEQFEAYKKVLETMDGKRVVVRTLDIGGDKELPYLDLPKEMNPFLGYR AIRLCLAQPEIFRPQLRALLRASVYGKLNIMFPMVATIKEFRDAKSILLEEKENLLREGY EVSDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYN PSILRLVKQVIEASHKEGKWTGMCGEMAGDQTAVPLLLGLGLDEFSMSATSILKARRQIN GLSKNEMAELANRAVECSTQEEVVELVNQLAK >gi|224999896|gb|ACJC01000104.1| GENE 8 7498 - 7734 325 78 aa, chain - ## HITS:1 COG:SA0936 KEGG:ns NR:ns ## COG: SA0936 COG0695 # Protein_GI_number: 15926671 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Staphylococcus aureus N315 # 5 76 4 75 77 90 61.0 5e-19 MTDTVIIYTQDDCPPCAFIKNYLVNKNIKFTEKNIKNQKYKNEMMNYDAFATPFILLKGI PMYQVDMEKLNYELNITP >gi|224999896|gb|ACJC01000104.1| GENE 9 7939 - 9294 1491 451 aa, chain + ## HITS:1 COG:SA0937 KEGG:ns NR:ns ## COG: SA0937 COG1271 # Protein_GI_number: 15926672 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Staphylococcus aureus N315 # 1 448 1 448 453 696 78.0 0 MDSVEIARLLTGMTLAVHIIFATIGVGMPLMFAIAEFIGIKKNDANYITLAKRWSKGYTI TVAVGVVTGTIIGLQLSLVWPTFMKMGGHVIALPLFMETFAFFFEAIFLSIYLYTWERFK NKWTHFFISIPVILGGSFSAFFITSVNSFMNTPAGFEIKNGRMVNVQPLEAMFNSSFMVR ALHVVATAGMTMAFILAAIAAFKLLRHNHKEDRIYHTKALNLSMIVGFINTVLSMIAGDL SAKFLHKVQPDKLAAYEWHYDTQSHANLVLFGVLNEKTHEVSGALEIPGLLSFLADNSFN TKVKGLNEFPKNELPPMIVHYFFDLMVSMGIFCFIISGLYMLFLIVKKLRKYVTSSVMLY AILLTGPASMLAIEFGWFLTEMGRQPWIIRGYMRVSEAATQAGGITLVTTLFGLLYLLLL VTSAYVLIRMFKNQPAYKDVEKVIEERGETK >gi|224999896|gb|ACJC01000104.1| GENE 10 9291 - 10307 944 338 aa, chain + ## HITS:1 COG:SA0938 KEGG:ns NR:ns ## COG: SA0938 COG1294 # Protein_GI_number: 15926673 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Staphylococcus aureus N315 # 1 338 1 338 339 452 83.0 1e-127 MIYAYIGITVLWVFLFCYIIIASIDFGAGFFALHSKMTGNEKKVNHLIHRYLNPVWEVTN VFFVFFFVGFIGFFPDSAKYLGTVLLVPGSIALILISIRSSFYAFENYGQDTKLPWIVLY GLTGLLIPASLATALTISEGGYIYEHGTHIDLDWIQLLLSPFAWSVVFLAIISVLYISSG FLTYYAHKANDQPAYDMTRQWHIFWGPPMIVISLFVFLSLRIQNSDHFRTAIFNYWWMFA ISFIFFIIAGLLTIFKKKHGLAFIMVILQMLFAFFGYGMSKLPYLLYPFIKITDSHVNPE MGLSLVIVFVLGLLLLIPSLILLLRLFVFDKAYVEGKK >gi|224999896|gb|ACJC01000104.1| GENE 11 10363 - 11022 1027 219 aa, chain + ## HITS:1 COG:SA0939 KEGG:ns NR:ns ## COG: SA0939 COG0569 # Protein_GI_number: 15926674 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Staphylococcus aureus N315 # 1 218 1 218 220 372 94.0 1e-103 MDKEYVVIGLGRFGGSIVRELNALDMDVMAIDRDENRVNEYSDIATHAVVADTTDEAVMK SLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHP ERDMGRRIAHNVASASVLDYLELADEHSIVELKSTEKMAGQTIIELDIRAQYGINIIAIK RAKEFIVSPDPNINIEIGDILIMIGHDNDLGRFEKNISK Prediction of potential genes in microbial genomes Time: Sun May 29 07:40:21 2011 Seq name: gi|224999895|gb|ACJC01000105.1| Staphylococcus epidermidis W23144 contig00145, whole genome shotgun sequence Length of sequence - 3979 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 2, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 29 - 66 -0.9 1 1 Op 1 7/0.000 - CDS 147 - 1829 1709 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily 2 1 Op 2 1/0.000 - CDS 1829 - 2047 401 ## COG5503 Uncharacterized conserved small protein - Prom 2076 - 2135 8.7 - Term 2409 - 2460 5.3 3 1 Op 3 . - CDS 2480 - 3031 720 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 3051 - 3110 1.9 + Prom 3121 - 3180 6.8 4 2 Tu 1 . + CDS 3214 - 3840 833 ## SE0790 hypothetical protein + Term 3850 - 3911 15.1 Predicted protein(s) >gi|224999895|gb|ACJC01000105.1| GENE 1 147 - 1829 1709 560 aa, chain - ## HITS:1 COG:SA0940 KEGG:ns NR:ns ## COG: SA0940 COG0595 # Protein_GI_number: 15926675 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Staphylococcus aureus N315 # 1 560 1 560 565 1073 95.0 0 MKQLHSNEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYL EQNQDKIVGLFITHGHEDHIGGVPFLLKQINVPIYGGPLALGLIRNKLEEHHLLRTTELH EIDESSVIKSKHFEISFYLTTHSIPEAYGVIVDTPEGKIVHTGDFKFDFTPVGEPANIAK MAQLGHEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFASFASNIYRVQQ AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFIEPNKINSVPKHELLILCTGS QGEPMAALSRIANGTHKQIKIIPEDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGETGVQCGVDEDNVFIFDIGD VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL LSGPDIISRGFVYMRESGQLIYDAQRKIKGDVISKLNSNKDIQWHQIKSSIIETLHPYLY EKTARKPMILPVIMKVNEDK >gi|224999895|gb|ACJC01000105.1| GENE 2 1829 - 2047 401 72 aa, chain - ## HITS:1 COG:SA0941 KEGG:ns NR:ns ## COG: SA0941 COG5503 # Protein_GI_number: 15926676 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Staphylococcus aureus N315 # 17 72 1 56 56 70 83.0 8e-13 MAVFKVFYQHNKDEVIVRENTQTIYVEGQTEEQVRRYLKDRNFNIEFITKLEGAHLEYEK EHSTHFNVENAE >gi|224999895|gb|ACJC01000105.1| GENE 3 2480 - 3031 720 183 aa, chain - ## HITS:1 COG:SA0942 KEGG:ns NR:ns ## COG: SA0942 COG0242 # Protein_GI_number: 15926677 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Staphylococcus aureus N315 # 1 183 1 183 183 307 80.0 6e-84 MITMKNIIRDGHPTLREKAKELSFPLSNNDKETLRAMREFLINSQDEETAKRYGLRSGVG LAAPQINEPKRMIAVYLPDDGNGKSYDYMLVNPKIVSYSVQEAYLPTGEGCLSVDENIPG LVHRHHRVTIKAQDIDGNDVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDANEPLKPHEEA VEV >gi|224999895|gb|ACJC01000105.1| GENE 4 3214 - 3840 833 208 aa, chain + ## HITS:1 COG:no KEGG:SE0790 NR:ns ## KEGG: SE0790 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 208 1 208 208 208 96.0 8e-53 MNFKKTVAIVLTSSVLLAGCTVDKKEIKKYDDQVQKAMDQEKPVNQVSKKINELEEKKQK LFKKVNDKDQSTRKKAAEDIVENVKQRQKEFEKEEKAIDNSEKEFKQAKQYLEHVENKAK KKEVEQLDSAIKEKYKSHDAYAKAYKKALNKEKQLFSYLNEDNATQSEVDEKSKDLSKAY KEMNNKFNAYSKAIEKVKREKQDVDQLK Prediction of potential genes in microbial genomes Time: Sun May 29 07:40:38 2011 Seq name: gi|224999894|gb|ACJC01000106.1| Staphylococcus epidermidis W23144 contig00146, whole genome shotgun sequence Length of sequence - 45524 bp Number of predicted genes - 43, with homology - 43 Number of transcription units - 29, operones - 10 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 28/0.000 + CDS 32 - 1144 1422 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 2 1 Op 2 24/0.000 + CDS 1148 - 2125 1379 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit + Term 2176 - 2216 5.1 + Prom 2161 - 2220 4.6 3 2 Op 1 30/0.000 + CDS 2256 - 3557 1654 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 4 2 Op 2 1/1.000 + CDS 3562 - 4968 811 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 4970 - 5039 1.9 + Prom 5195 - 5254 8.8 5 3 Tu 1 . + CDS 5280 - 5558 390 ## COG4476 Uncharacterized protein conserved in bacteria + Prom 5577 - 5636 8.1 6 4 Op 1 4/0.200 + CDS 5697 - 6236 497 ## COG1396 Predicted transcriptional regulators 7 4 Op 2 30/0.000 + CDS 6248 - 7342 1143 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 8 4 Op 3 36/0.000 + CDS 7335 - 8138 598 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 9 4 Op 4 25/0.000 + CDS 8144 - 8956 497 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 10 4 Op 5 . + CDS 8953 - 10026 943 ## COG0687 Spermidine/putrescine-binding periplasmic protein 11 4 Op 6 . + CDS 10095 - 11246 1235 ## SERP0690 hypothetical protein + Term 11255 - 11292 3.9 + Prom 11299 - 11358 7.8 12 5 Tu 1 . + CDS 11553 - 12089 441 ## SERP0691 hypothetical protein + Term 12142 - 12188 10.4 - Term 12229 - 12277 0.2 13 6 Tu 1 . - CDS 12373 - 13719 1252 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family - Prom 13742 - 13801 7.5 - Term 13791 - 13840 7.5 14 7 Tu 1 . - CDS 13849 - 14460 743 ## COG4493 Uncharacterized protein conserved in bacteria - Prom 14484 - 14543 4.7 + Prom 14428 - 14487 8.8 15 8 Tu 1 . + CDS 14637 - 15458 913 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Term 15525 - 15564 3.0 - Term 15791 - 15826 1.5 16 9 Tu 1 . - CDS 16033 - 16224 242 ## SE0806 hypothetical protein 17 10 Tu 1 . + CDS 16323 - 18170 2266 ## COG1217 Predicted membrane GTPase involved in stress response + Term 18191 - 18240 1.1 - Term 18172 - 18234 10.5 18 11 Op 1 . - CDS 18273 - 18428 74 ## COG4896 Uncharacterized protein conserved in bacteria 19 11 Op 2 . - CDS 18430 - 18912 476 ## SERP0700 hypothetical protein - Prom 18939 - 18998 5.9 + Prom 18961 - 19020 8.2 20 12 Tu 1 . + CDS 19057 - 19332 330 ## COG4838 Uncharacterized protein conserved in bacteria + Prom 19595 - 19654 6.8 21 13 Tu 1 . + CDS 19735 - 20958 884 ## COG0772 Bacterial cell division membrane protein + Term 20998 - 21040 4.1 22 14 Tu 1 . + CDS 21357 - 24806 3859 ## COG1038 Pyruvate carboxylase + Term 24814 - 24859 6.2 - Term 24857 - 24913 1.2 23 15 Tu 1 . - CDS 24948 - 25874 969 ## COG1612 Uncharacterized protein required for cytochrome oxidase assembly - Prom 26078 - 26137 9.9 + Prom 26029 - 26088 9.0 24 16 Op 1 1/1.000 + CDS 26159 - 27070 897 ## COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) 25 16 Op 2 1/1.000 + CDS 27096 - 27557 521 ## COG2322 Predicted membrane protein + Term 27574 - 27612 4.1 + Prom 27839 - 27898 11.3 26 17 Op 1 2/0.600 + CDS 27997 - 29049 1123 ## COG2340 Uncharacterized protein with SCP/PR1 domains 27 17 Op 2 . + CDS 29070 - 29504 313 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 - Term 29937 - 29977 6.7 28 18 Tu 1 . - CDS 30028 - 30954 1112 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 31190 - 31249 11.0 29 19 Tu 1 . + CDS 31176 - 31427 272 ## COG4471 Uncharacterized protein conserved in bacteria + Term 31676 - 31709 -0.5 30 20 Tu 1 . - CDS 31437 - 31826 323 ## SERP0713 hypothetical protein + Prom 31809 - 31868 6.1 31 21 Op 1 14/0.000 + CDS 31893 - 32435 346 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 32 21 Op 2 . + CDS 32437 - 32922 439 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 + Term 32947 - 32996 -0.5 - Term 33244 - 33291 2.1 33 22 Tu 1 . - CDS 33330 - 34463 834 ## COG1323 Predicted nucleotidyltransferase - Prom 34490 - 34549 5.2 + Prom 34507 - 34566 8.1 34 23 Op 1 20/0.000 + CDS 34590 - 35144 698 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein + Term 35145 - 35196 5.2 35 23 Op 2 . + CDS 35222 - 35395 313 ## PROTEIN SUPPORTED gi|27467745|ref|NP_764382.1| 50S ribosomal protein L32 + Term 35406 - 35459 10.5 - Term 35817 - 35863 11.0 36 24 Tu 1 . - CDS 35879 - 38224 3724 ## SERP0719 cell wall surface anchor family protein - Prom 38286 - 38345 6.4 + Prom 38311 - 38370 8.9 37 25 Tu 1 . + CDS 38563 - 39303 196 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 38 26 Op 1 40/0.000 + CDS 39671 - 40729 1294 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit 39 26 Op 2 . + CDS 40729 - 43131 2754 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit + Term 43135 - 43197 16.3 - Term 43130 - 43180 11.6 40 27 Tu 1 . - CDS 43183 - 44109 888 ## COG1039 Ribonuclease HIII - Prom 44282 - 44341 12.2 + Prom 44231 - 44290 9.2 41 28 Op 1 4/0.200 + CDS 44368 - 44634 345 ## COG3027 Uncharacterized protein conserved in bacteria 42 28 Op 2 4/0.200 + CDS 44635 - 45156 291 ## COG1286 Uncharacterized membrane protein, required for colicin V production + Term 45168 - 45222 2.7 43 29 Tu 1 . + CDS 45231 - 45522 346 ## COG1796 DNA polymerase IV (family X) Predicted protein(s) >gi|224999894|gb|ACJC01000106.1| GENE 1 32 - 1144 1422 370 aa, chain + ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 6 370 7 371 371 544 73.0 1e-155 MAPKLQAQFDAVKVLNETQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRI LDQRSISLNRQGRLGFYAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPLTDA FLFSRGHFKGNQFPEGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQ GDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDA LAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVR FRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQ YEIYKEKESK >gi|224999894|gb|ACJC01000106.1| GENE 2 1148 - 2125 1379 325 aa, chain + ## HITS:1 COG:SA0944 KEGG:ns NR:ns ## COG: SA0944 COG0022 # Protein_GI_number: 15926679 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Staphylococcus aureus N315 # 1 325 1 325 325 572 91.0 1e-163 MAQMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAE SGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRAPFG GGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLYRSF REEVPEEEYTIDIGKANVKKEGNDITLISYGAMVQESLKAAEELEKDGYSVEVIDLRTVQ PIDIDTLVASVEKTGRAVVVQEAQRQAGVGAQVAAELAERAILSLEAPIARVAASDTIYP FTQAENVWLPNKKDIIEQAKATLEF >gi|224999894|gb|ACJC01000106.1| GENE 3 2256 - 3557 1654 433 aa, chain + ## HITS:1 COG:SA0945 KEGG:ns NR:ns ## COG: SA0945 COG0508 # Protein_GI_number: 15926680 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 433 1 430 430 687 86.0 0 MAFEFRLPDIGEGIHEGEIVKWFIKAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTVEEVL VDEGTVAVVGDVIVKIDAPDAEEMQFKGHGDDEDSKKEEKEQESTVQEEASSTQSQEKTE VDENKTVKAMPSVRKYARENGVNIKAVNGSGKNGRITKEDIDAYLNGGSSEEGSNTSAAS ESTSSDVDNASATQALPEGDFPETTEKIPAMRKAIAKAMVNSKHTAPHVTLMDEIDVQEL WDHRKKFKEIAAEQGTKLTFLPYVVKALVSALKKYPALNTSFNEEAGEVVHKHYWNIGIA ADTDKGLLVPVVKHADRKSIFEISDEINELAVKARDGKLTSEEMKGATCTISNIGSAGGQ WFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHIK RLLNNPELLLMEG >gi|224999894|gb|ACJC01000106.1| GENE 4 3562 - 4968 811 468 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 466 5 457 458 317 38 1e-85 MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALLH ASHRFVEAQNSENLGVIAESVSLNYQKVQEFKTSVVNKLTGGVEGLLKGNKVEIVRGEAY FVDNNSLRVMDEKSAQTYNFKHAIIATGSRPIEIPNFEFGKRVIDSTGALNLQEVPNKLV VVGGGYIGSELGTAFANFGSEVTILEGAKDILGGFEKQMTQPVKKGMKEKGIEIVTEAMA KSAEETENGVKVTYEAKGEEQTIEADYVLVTVGRRPNTDELGLEELGLKFADRGLLEVDK QSRTSIENIFAIGDIVPGLPLAHKASYEGKVAAEAIDGQAAEVDYIGMPAVCFTEPELAQ VGYTEAQAKEEGLSIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGAS DIISELGLAIESGMNAEDIALTVHAHPTLGEMTMEAAEKAIGYPIHTM >gi|224999894|gb|ACJC01000106.1| GENE 5 5280 - 5558 390 92 aa, chain + ## HITS:1 COG:SA0948 KEGG:ns NR:ns ## COG: SA0948 COG4476 # Protein_GI_number: 15926682 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 84 1 84 91 95 58.0 2e-20 MEYQYPLDLDWTNDEMMKVIHFFNKIENYYESSVKGDEVLNAYKNFKHIVPGKADEKQIF KEFENKSGYNSYKVIQEIKKNPNQTIFSKDID >gi|224999894|gb|ACJC01000106.1| GENE 6 5697 - 6236 497 179 aa, chain + ## HITS:1 COG:SA0949 KEGG:ns NR:ns ## COG: SA0949 COG1396 # Protein_GI_number: 15926683 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 179 1 179 179 265 77.0 5e-71 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD FFKESSDEKVLYKKNEQTIYDEYDKGYILNWLVTNSNEFDMEPLILTLRPNASYKNFKPS ESDTFIYCLNGEVSLQLGNQVYKACKEDVLYFKAKDKHRLYNETNKEVKVLIVATASYL >gi|224999894|gb|ACJC01000106.1| GENE 7 6248 - 7342 1143 364 aa, chain + ## HITS:1 COG:SA0950 KEGG:ns NR:ns ## COG: SA0950 COG3842 # Protein_GI_number: 15926684 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 364 1 364 364 607 85.0 1e-173 MNPLLSFKDVSKGFEDVQILNEINIDIEPGYFYTLLGPSGCGKTTILKLIAGFEYPDSGD IIYKDKPIGKMPPNKRKVNTVFQDYALFPHLNVFDNIAYGLKLKKLSKSEIKRKVTEALQ LVKLSGYEHRQIQGMSGGQKQRVAIARAIVNEPEILLLDESLSALDLKLRTEMQYLLREL QSRLGITFIFVTHDQEEALALSDYIFVMKDGKIQQFGTPIDIYDEPVNRFVADFIGESNI VEGTMVEDFVVNIYGQNFDCVDMGITENKKVEVVIRPEDISLVSKNDGLFKAKVDSMLFR GVHYEICCKDRKGYEWVIQSTKKANVGSEVGLYFEPEAIHIMVPGETEEEFDKRIESYED YHHA >gi|224999894|gb|ACJC01000106.1| GENE 8 7335 - 8138 598 267 aa, chain + ## HITS:1 COG:SA0951 KEGG:ns NR:ns ## COG: SA0951 COG1176 # Protein_GI_number: 15926685 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Staphylococcus aureus N315 # 1 267 1 265 265 351 80.0 7e-97 MRNVNKWLLVPYLLWMVIFIIIPVILLVYFSFIDIHGHFSFTNYEQVFSTRYLKMFIDSI WYAALITMITLVISYPAAYFISYSRFQNILLMLLIIPTWINLLLKTYAFIGLLGHDGFIN QALHVFQIPKLNLLFTSGAFLLVASYIYIPFMILPIFNSMKAIPNNILQASNDLGASTFT TFRKVIVPLTREGIKTGVQVTFIPALSLFMITRLIAGNKVINVGTAIEEQFLTIQNYGLG STIALFLIIFMAFLLIITKSKSSNGKG >gi|224999894|gb|ACJC01000106.1| GENE 9 8144 - 8956 497 270 aa, chain + ## HITS:1 COG:SA0952 KEGG:ns NR:ns ## COG: SA0952 COG1177 # Protein_GI_number: 15926686 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Staphylococcus aureus N315 # 1 268 1 268 269 392 84.0 1e-109 MKWYGKLYIALLISVLYIPIFFLMIYSFNSAGNMSHFEHFTLEHYHSLFHNDRLMSVIFN TVAVALLSASIATVIGTFGAIALYYLRNKRFKITLLTMNNVLMVSSDVVIGASFLIMFTA IGHFTGLGLGFSTVLASHIAFCIPIVVIIVLPQLYEMNDNMLNAARDLGANESQLLSSII IPNIMPSIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTII FIAIMFGVFGYYFIQHIVNRQKKMKRGVNE >gi|224999894|gb|ACJC01000106.1| GENE 10 8953 - 10026 943 357 aa, chain + ## HITS:1 COG:SA0953 KEGG:ns NR:ns ## COG: SA0953 COG0687 # Protein_GI_number: 15926687 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Staphylococcus aureus N315 # 1 357 1 357 357 584 79.0 1e-166 MKRFFQLIISAMVIGILCLMISHWFKSKDNTHANEKLYVYNWGEYIDPSLIKKFEKETGI QVVYETFDSNEAMEAKIRNGGTHYDVAFPSEYTVQKLKKAKLLETLNHDKIPNIRNLDND YMNLSYDPNNRYSIPYFFGTVGILYDKEKYPNETFDSWDDLYHSQLKNDILLVDGAREII GMGLNKLGYSLNDKNPTHIHQAEKDLHNLAPQVRGIVGDEITMMLQQNEGHVAVVWSGVA APLVQENTRYNYVIPKEGSNLWFDNMVIPKTAQNKEGAYKFMNFLLDAQNSAQNTEWVGY ATPNKAARSKLPKEVRNDHRFYPSKQEQQRLEVYKDLGQSSLSDYNESFLNFKMSLK >gi|224999894|gb|ACJC01000106.1| GENE 11 10095 - 11246 1235 383 aa, chain + ## HITS:1 COG:no KEGG:SERP0690 NR:ns ## KEGG: SERP0690 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 383 1 383 383 613 97.0 1e-174 MLGEQYTQIKRPANRLTEKILGWFSWVFLLILTIVSMFIALVSFSNDTSIANLENTLNNN ELVQQILANNDLSTTQFVIWLQNGVWAIIVYFIVCLLISFLALISMNIRILSGFLFLIAA IVTIPLVLLIVTLIIPILFFIIAMMMFARRDRIETVPSYYNDYDQTYYDERGFYEPESRN EHGYNDDVYEPMHTKKEDRNTRRQFNRNAQQQDSYNGITDNQPDEDISSNQLYSDEYVDN EDKYSQFPKRAVESEYASQQTEDEPTVMSRQAKYNKKSKNTDFEDVQQEHMEGNQLDDVG VVEPQIDPKELKAQRKREKAEIRAKKKEKRKAYNKRMKERRKNQPSAVNQRRMNYEERRQ MINNEHEDADNNLNQEEDSKKEN >gi|224999894|gb|ACJC01000106.1| GENE 12 11553 - 12089 441 178 aa, chain + ## HITS:1 COG:no KEGG:SERP0691 NR:ns ## KEGG: SERP0691 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 178 1 178 178 281 95.0 8e-75 MNRKVEKRLAWIANILSLLFLIFGILSIFVINNASNQQQYNELMKQFSGNNQDMSSEMFL VSLIASLVILGFSTLLGFVGAMVIEGRKNLAASLLIAAAIVGLFTTNLIAMVLWMIAAIR LFAKKDKTYVNENDTDQLRQNHSKDQSDLNHQQNQQQKDVWDPEQEINKQKKDDPYIY >gi|224999894|gb|ACJC01000106.1| GENE 13 12373 - 13719 1252 448 aa, chain - ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 1 448 1 448 450 680 84.0 0 MNINSNNQEQQRSLDEINNTINFNHNDSASQKFLAFLGPGLLVAVGYMDPGNWITSMQGG AQYGYTLLFVILISSLSAMLLQSMTVRLGIATGMDLAQMTRHFLNKPVAIMFWIIAELAI IATDIAEVIGSAIALDLIFGIPLIVGALITVFDVFLLLFIMKFGFRKIEAIVGTLIFTVL AIFVFEVYISSPQVMDMLNGFVPHKEIVTNQGILYIALGIIGATIMPHNLYLHSSIVQSR KYDRHSIHEKAQAIKYATIDSNIQLSIAFVVNCLLLTLGAALFFGTKTEDLGGFYDLYSA LKTEPALGASLGGIMSTLFAVALLASGQNSTITGTLAGQIVMEGFLKLSIPNWLRRLITR SLAVIPVIICLIVFKGNTEKIEQLLVFSQVFLSIALPFSLIPLQLATSNQNLMGTFKNKT WINIISWLLIIILSGLNVYLIIQTFQEL >gi|224999894|gb|ACJC01000106.1| GENE 14 13849 - 14460 743 203 aa, chain - ## HITS:1 COG:SA0957 KEGG:ns NR:ns ## COG: SA0957 COG4493 # Protein_GI_number: 15926691 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 202 1 202 204 276 66.0 1e-74 MTQYTFSPKDFKAFEVEGLDQRMEALNDYVRPQLHQLGSYFEEYFTTQTGETFYAHVAKH ARRSVNPPIDTWVAFAPNKRGYKMLPHFQIGLFRNQLFIMFGIMHEGRNKEEKVKIFDKH FDKLTSLPSDYSVSLDHMKSEKHYINDMSNEELHAAIDRVKNVKKGEFFVARTLSPTDKR LQSDKSFLKFVEETFDEFLKFYQ >gi|224999894|gb|ACJC01000106.1| GENE 15 14637 - 15458 913 273 aa, chain + ## HITS:1 COG:SA0958 KEGG:ns NR:ns ## COG: SA0958 COG0483 # Protein_GI_number: 15926692 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Staphylococcus aureus N315 # 1 273 1 273 275 385 66.0 1e-107 MALYDFAKGLILEAGNKVRLMMQEELDIRTKSNPNDLVTNVDKATENYLYETILHNYPDH QVIGEEGHGHNLEYLNGVIWVIDPIDGTLNFVHQKENFAISIGIYHDGKPYAGFVYDVMK DVLYHAKVGQGAFENTHKLEMIQNTELKRSIIGINPNWLTKPILSDIFSSIVNEARSARA YGSAALEIISVAKGQLAAYVTPRLQPWDFAGGLLILNEVGGIGTNLLGDKLDFNQPNSIL IANPSLHREILNHHLNQQRDTLITLHEKRFGKR >gi|224999894|gb|ACJC01000106.1| GENE 16 16033 - 16224 242 63 aa, chain - ## HITS:1 COG:no KEGG:SE0806 NR:ns ## KEGG: SE0806 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 63 1 63 63 93 98.0 2e-18 MQQKKSKGIFWIFSILAVVFLTLFSFALGAANVPMMILTFILLIATFGVGFSVKKKYRKN NWL >gi|224999894|gb|ACJC01000106.1| GENE 17 16323 - 18170 2266 615 aa, chain + ## HITS:1 COG:SA0959 KEGG:ns NR:ns ## COG: SA0959 COG1217 # Protein_GI_number: 15926694 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Staphylococcus aureus N315 # 1 615 1 615 615 1102 92.0 0 MTNLREDVRNIAIIAHVDHGKTTLVDQLLKQSGIFRENEHVDERAMDSNDLERERGITIL AKNTAIDYKGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL EQNLKPVVVVNKIDKPAARPEGVVDEVLDLFIELEANDEQLDFPVVYASAVNGTASLDSE NQDENMQSLYETIIDYVPAPVDNSDEPLQFQIALLDYNDYVGRIGVGRVFRGKMRVGDNV SLIKLDGTVKNFRVTKIFGYFGLKREEIEEAQAGDLIAVSGMEDINVGETVTPHDHRDPL PVLRIDEPTLEMTFKVNNSPFAGREGDYVTARQIQERLDQQLETDVSLKVTPTDQPDSWV VAGRGELHLSILIENMRREGFELQVSKPQVILREIDGVLSEPFERVQCEVPSENAGAVIE SLGARKGEMLDMMTTDNGLTRLIFMVPARGMIGYTTEFMSMTRGYGIINHTFEEFRPRVK AQIGGRRNGALISMDQGQATSYAIINLEDRGVNFMEPGTEVYEGMIVGEHNRENDLTVNI TKAKHQTNVRSATKDQTQTMNRPRILTLEEALQFINDDELVEVTPESIRLRKKILNKSAR EKEAKRVKQLMQDEQ >gi|224999894|gb|ACJC01000106.1| GENE 18 18273 - 18428 74 51 aa, chain - ## HITS:1 COG:SAS032 KEGG:ns NR:ns ## COG: SAS032 COG4896 # Protein_GI_number: 15926695 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 47 1 47 55 71 87.0 3e-13 MRKVQCIICDTKVFIDEHTVEAKRLRNNPIRTFMCDDCKSRLDTPKQSKRD >gi|224999894|gb|ACJC01000106.1| GENE 19 18430 - 18912 476 160 aa, chain - ## HITS:1 COG:no KEGG:SERP0700 NR:ns ## KEGG: SERP0700 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 160 1 160 160 302 97.0 3e-81 MIQIKGAVNFPISLDSTTWIFDDRKVTIDDLERGVFDGSRPINFDDNKEWNRAILEGQTN PPTLDSEIKYKKRSVLDETFVINMTPFFKNAEPMENASTIKLSNKDYSINVPMDLLPYLF FQFSRNGKRLYSDNAVDSFIYIPEEGYSHKFKYVTHIEVL >gi|224999894|gb|ACJC01000106.1| GENE 20 19057 - 19332 330 91 aa, chain + ## HITS:1 COG:SA0961 KEGG:ns NR:ns ## COG: SA0961 COG4838 # Protein_GI_number: 15926697 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 91 1 91 91 130 82.0 4e-31 MSNQSKLNSAAYDQLNKDADRILHLIKVQMDNLTLPSCPLYEEVLDTQMFGLQKEVDFAV QLGLVDKEDGKQLMLRLEKELSKLHEAFTNV >gi|224999894|gb|ACJC01000106.1| GENE 21 19735 - 20958 884 407 aa, chain + ## HITS:1 COG:SA0962 KEGG:ns NR:ns ## COG: SA0962 COG0772 # Protein_GI_number: 15926698 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Staphylococcus aureus N315 # 36 388 1 353 373 465 78.0 1e-131 MKNFKNIMRYIGKTSKFIDYPLLITYVVLCLIGLVMVYSASMVAATKGTLTGGVPVSGTY FYNRQLLYVIMSFIIVFFMAFIMNVKILKKLNVQKGMMIGIFILLLLTLVIGKNINGSKS WINLGFMNLQASELLKIAIILYIPFMIEKKMPAVRHNIKLILGPILFVVTCLILVLFQKD VGQTMLIVIIFFSIIFYSGIGVQNMLKWGTLVAIGFIIVATFMFMLDMVPSYLQARFSTL TNPFSQESGTGYHISNSLLAIGNGGLFGRGLGNSIMKLGYLPEPHTDFIFAIICEEMGLI GGLIVLILEYFIVYRAFQLANKTQSYFYKLVCVGIASYIGSQTFVNIGGISATIPLTGVP LPFISFGGSSMISLSIAMGLLLITAKQIKQDDKRLKQRKVDIKRRYN >gi|224999894|gb|ACJC01000106.1| GENE 22 21357 - 24806 3859 1149 aa, chain + ## HITS:1 COG:SA0963 KEGG:ns NR:ns ## COG: SA0963 COG1038 # Protein_GI_number: 15926699 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Staphylococcus aureus N315 # 1 1149 1 1149 1150 2070 88.0 0 MKQIKKLLVANRGEIAIRIFRAAAELNISTVAIYSNEDKSSLHRYKADESYLVGSDLGPA ESYLNIERIIEVALRAGVDAIHPGYGFLSENEQFARRCADEGIKFIGPHLEHLDMFGDKV KARTTAINANLPVIPGTDGPIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSEL EDAFHRAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQK VVEVAPSVGLSNKLRERICDAAIQLMKNIKYVNAGTVEFLVSGDEFFFIEVNPRVQVEHT ITEMITGIDIVKTQILVADGESLFGDKISMPHQNEIQTLGYAIQCRITTEDPTNDFMPDS GTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAVSFKQAEEKMERSLREMR IRGVKTNIPFLINVMRNDKFRSGDYTTKFIEETPELFDIAPTLDRGTKTLEYIGNVTING FPNVEKRPKPEYESTKIPKISQKKINQLSGTKQILEQHGPTGVANWVREQEDVLITDTTF RDAHQSLLATRVRTKDMMNIASKTAEVFKDSFSLEMWGGATFDVAYNFLKENPWERLERL RKAIPNVLFQMLLRASNAVGYKNYPDNVIKKFVHESAKAGVDVFRIFDSLNWVDQMKVAN EAVQEAGMVSEGTICYTGDILNAERSNIYTLDYYVKMAKELEREGFHILAIKDMAGLLKP KAAYELIGELREATHLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSGLTSQPSA NSLYYALNGFPRNLRTDIDGLEELSHYWSVVRPYYADFESDIKSPNTEIYQHEMPGGQYS NLSQQAKSLGLGERFDEVKEMYRRVNFLFGDLVKVTPSSKVVGDMALYMVQNDLDEDTVI NDGYKLDFPESVVSFFKGDIGQPVNGFNKKLQDVILKGQQPITERPGEYLEPVDFEAIRQ ELSDIQQDEVTEQDIISYVLYPKVYKQYIQTKEQFGNVSLLDTPTFLFGMRNGETVEIEI DTGKRLIIKLETISEPDENGKRTIYYAMNGQARRIYIQDENVKTNANVKPKADKSNPNHI GAQMPGSVTEVKVSVGDEVQANQPLLITEAMKMETTIQAPFDGIIKQINVANGDAIATGD LLVEIEKQS >gi|224999894|gb|ACJC01000106.1| GENE 23 24948 - 25874 969 308 aa, chain - ## HITS:1 COG:SA0964 KEGG:ns NR:ns ## COG: SA0964 COG1612 # Protein_GI_number: 15926700 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein required for cytochrome oxidase assembly # Organism: Staphylococcus aureus N315 # 7 308 1 302 303 442 80.0 1e-124 MMGCLSLFRKQNLKWLGVLATIIMTFVQLGGALVTKTGSEDGCGSSWPLCNGALLPENLP IQTIIELSHRAVSAISLIVVLWLVITAWKNIGYIKEIKPLSIISVGFLLVQALVGAAAVI WQQNPYVLALHFGISLISFSSVFLMTLIIFSIDKKYEADILFIHKPLRILTWLMAIIVYL TIYTGALVRHTKSSLAYGAWPIPFDDIVPHNAHDWVQFSHRGMALITFIWIMITFIHAIK NYSDNRTVRYGYTASFILVILQVITGALSVITNVNLIIALFHALFITYLFGMIAYFILLM LRTTRSLK >gi|224999894|gb|ACJC01000106.1| GENE 24 26159 - 27070 897 303 aa, chain + ## HITS:1 COG:SA0965 KEGG:ns NR:ns ## COG: SA0965 COG0109 # Protein_GI_number: 15926701 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Polyprenyltransferase (cytochrome oxidase assembly factor) # Organism: Staphylococcus aureus N315 # 1 303 2 304 304 481 85.0 1e-135 MNKDQTLSHTTGRVSFKELQQIIKMGLVQGNLIPAFAGAWLAIVMTNHSFLSSIPQILLM LVGSTLIMGGACALNNYYDQDIDRIMPSKQSRPTVNDRISDRNLLMLSFGMMLIGEACLF LLNIPSGVLGLIGIVGYVSYYSIWSKRHTTWNTVVGSFPGAVPPLIGWVAIDGSLSLPAV ALFLVVFCWQPIHFYALAIKRSDEYALANIPMLPSVKGFKRTRVSMFIWLVLLLPLPFLL SNLGVTFVVIATLLNLGWLALGFTTFRKESNQTKWATQMFIYSLNYLVVFFALVVVVSLI KMI >gi|224999894|gb|ACJC01000106.1| GENE 25 27096 - 27557 521 153 aa, chain + ## HITS:1 COG:SA0966 KEGG:ns NR:ns ## COG: SA0966 COG2322 # Protein_GI_number: 15926702 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 152 1 152 153 211 79.0 3e-55 MNVPILPTISTSCIVISAILVAIGWTLIWKRQVHKHKNIMLWAAFFALTFFIIYAARTIF IGNTAFGGPSSIKVYYTIFLVFHIILATVGGVLGLIQIILAFKDKLHIHRKIGPWASIIW FFTAITGVAVYVLLYILYPGGETTSLLKATLGL >gi|224999894|gb|ACJC01000106.1| GENE 26 27997 - 29049 1123 350 aa, chain + ## HITS:1 COG:SA0967 KEGG:ns NR:ns ## COG: SA0967 COG2340 # Protein_GI_number: 15926703 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Staphylococcus aureus N315 # 1 350 1 345 345 462 68.0 1e-130 MKKLIIKVIGVILLVTFLIYLFYSPRLKFDVLENPNKNSKTTKTEQFKQANKDAENPKPK EGIGTWIGKDIKTLTHHYGQADRSYPYKNGFKNYVFKHKDEYYIVSTNKGTITSVYATGK GVKVSPLKIGENSSHIFEDTSINPEPTVKTKGKTYKFEMSDEDLKTQTLIKYGDVYAQIY SDQQTNKILAVRFLDANTLATLQPYKLNRVEDEERISESSDDKIPHEQNPNQLITLYEVT NKMREMKNLKSLKVNNDIARIAAINLYEATDKGSDSVEFTENALTQQLDERHVSYKSASQ NVGYDFDDVPTLIHSWINSDIHRSRLLSNKYDEMGGEVMSDYYSLIFVEK >gi|224999894|gb|ACJC01000106.1| GENE 27 29070 - 29504 313 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 8 142 10 145 146 125 42 6e-28 MITEETLDILDDIEDISDMIVQSDIYVSYRRAKIQLDADDEASLFYQAFLKVKDKYDDVM RFGKYHPDYKDIMLETRQRKRAYEMLPVVMEYKAKEVALQNLIDEVMSKIAFAVSEHVKI ETGNPFFQTGHDGCASGGTCNCSL >gi|224999894|gb|ACJC01000106.1| GENE 28 30028 - 30954 1112 308 aa, chain - ## HITS:1 COG:SA0969 KEGG:ns NR:ns ## COG: SA0969 COG0584 # Protein_GI_number: 15926705 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Staphylococcus aureus N315 # 1 307 1 305 308 403 65.0 1e-112 MAHSKKWFINGTLATAGIISSLFYFFKNKNKPPQQLKSIPPFFSGQAPYILAHRGGMAMR PEQTQLAFDNAVEYGLDGFETDVRLTKDEQLIVFHDALVDRTTNGSGKVSEHTLAELKRL DAGYHFTDINNQTPYRGHDKAKILSFEELLELYPNMYINVDLKDAPDTYEGRIAPKVIFD NIIKHGAQHRVLVTSFHKKQIQRFTEYNQADIAIGASEAEVAEGFLKFNGMLGHTFKPQA DTFQMPVAYKGISLTSKRFIQWLNLNNIVPGYYGVNSIDLMTDLYHKGVHTLVTDRPDLG QQFKETLK >gi|224999894|gb|ACJC01000106.1| GENE 29 31176 - 31427 272 83 aa, chain + ## HITS:1 COG:SA0970 KEGG:ns NR:ns ## COG: SA0970 COG4471 # Protein_GI_number: 15926706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 82 1 82 84 105 82.0 2e-23 MNIIPRTSLIIYLKHMKHERQIRKYGHIVHSNRQRKYVVMYINEADADNIVHKLMQLKYV HDIQGSPYKYLKKTYEKEKHEIQ >gi|224999894|gb|ACJC01000106.1| GENE 30 31437 - 31826 323 129 aa, chain - ## HITS:1 COG:no KEGG:SERP0713 NR:ns ## KEGG: SERP0713 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 129 1 129 129 242 97.0 3e-63 MKQSFIKIGEGLTDLFEFTTLIEYNHTRINRIVYFHTPHSEKQLSSVAIIMNPTAEKHFQ AMYIMTNALKYPYPKGNKKFKMINSAAENYDIPVVGIDVQPPDVYPDLELYFNYLISVLR LQRWIPPLQ >gi|224999894|gb|ACJC01000106.1| GENE 31 31893 - 32435 346 180 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 171 13 187 199 137 42 9e-32 MRVIAGKHKSKALESLEGRNTRPTMDKVKEGIFNSLYDVSGLGLDLFAGSGALGIEALSR GMDKMIFVDQNFKAVKVIKANLNQLDLMSQAEVYKNNADRALKALAKREVQFDVIFLDPP YNKGLINEAISRIAEFNLLKENGIIVCEFSHNEEITIAPFQMIKRYHYGLTDTLLLEKGE >gi|224999894|gb|ACJC01000106.1| GENE 32 32437 - 32922 439 161 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 1 160 1 160 164 173 53 1e-42 MSKTRAVIPGSFDPITYGHLDIIERSADRFDEIHVCVLKNSSKGGTFDSKERMALIEESV KHLPNIQVHHFNGLLVDFCDQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNSNIETMYMM TSANYSFISSSIVKEVAAYQADISPFVPPHVERALKKKFNV >gi|224999894|gb|ACJC01000106.1| GENE 33 33330 - 34463 834 377 aa, chain - ## HITS:1 COG:SA0974 KEGG:ns NR:ns ## COG: SA0974 COG1323 # Protein_GI_number: 15926710 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Staphylococcus aureus N315 # 1 376 1 376 379 414 57.0 1e-115 MKSVGLITEYNPFHNGHLFHASLSKQRSETNVTIAIMSGNFVMRGEPAIYHKFKRTEMAL SAVDLVVELPLIGSLSSSDTFAEIAIKTAQYLDIDIISFGSESASLKDLQYLATQMIAYE THPDFKEKLKQGKSYPRILSELTHNDTLLQSPNNILGISYLKAMQQFAPRMSALTIKREG SLHHQKVIDHHHFASGTSIRRSLMNDNEDWKNVVPTQIQSLYCTPHTTVEDTFPFIKHQL ITQPKESLHSIYTINEGFENRLQTMIHRSDSFESLISNLKTKRYTQTYIQRVLMNVLLNI TKDDVNKEINAVRVLGMSEKGRSYLKYLKATYPNRHYITNVNQKTAHYFKNEIKATHVYN LLSNQSLTDFNTPLVRI >gi|224999894|gb|ACJC01000106.1| GENE 34 34590 - 35144 698 184 aa, chain + ## HITS:1 COG:SA0975 KEGG:ns NR:ns ## COG: SA0975 COG1399 # Protein_GI_number: 15926711 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Staphylococcus aureus N315 # 1 184 1 185 185 251 75.0 4e-67 MKWSITQLRKYQGKPFEFNQTVNFEHLRESLDLIDLSDINVEGQLTVKSNEVIADMHVTG TYTMPCARTLVPVDVPLDVSTSEVFDLEGYDGYTDSDDQEDEHYHLVTDGMINIKDIAEE LVIIEKPMRAYSEHSDQMLTEGNGWEVIDEDQLTEVQKEQDSDSEQRKVDPRLQKLQQLY DKDQ >gi|224999894|gb|ACJC01000106.1| GENE 35 35222 - 35395 313 57 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467745|ref|NP_764382.1| 50S ribosomal protein L32 [Staphylococcus epidermidis ATCC 12228] # 1 57 1 57 57 125 100 6e-28 MAVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGEYKLSHRVCKNCGSYNGEEVVSK >gi|224999894|gb|ACJC01000106.1| GENE 36 35879 - 38224 3724 781 aa, chain - ## HITS:1 COG:no KEGG:SERP0719 NR:ns ## KEGG: SERP0719 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 721 1 676 824 597 78.0 1e-169 MKKSSKFSKDFPTRKNHYAIRKFTVGTASIIVGSFLFFGQTQAHAEEFERVTTGTVDTGG QPARADQGQEGPQAGADTHNTASQPGATGQDAPNENHAGDQNAAVTLPADQENNAPQAGA GTPGAENTPQAGGENHNQDNAVTAAGTSGEQNGGKPATSTTGQDAAQPNGPQGTSVAQPS NDASSQGHDTPQADAGTHNTEGQPAVTTGEQAGGKPAATKPEGADTETAPVPNTADENHA QPSPQSGGTTATQAGQVKPSGDSTPTGKPNTADDQGTQIKPTSNQGTTATTGETGNQKPS GQTGNTENTPNNGTQVKPNNNPAVTGTPNANEEQTGQPNATVTPGQGNDEINGATKPGEV SPKPEENNPAVTEPGTTAPGNTNQGTQVKPNPDQNNNPTTGQDTDQTGQSTQVKPNNDQT ATGTQGATGDQNTQQGNTEQNNQNAEQGNTGQEGSNPNQSAQLGATVKPGSAPTQDTEVK PNPDQNNNPTTGQDADQTGQGTQVKPNNNQTATGTQGATGDQNTQQGNTEQNNQNAEPSA PGTTDQAGATVKPGSAPNQDTEVKPNPDQNNNSPTGQDADQTGQGTQVKPNNDQTATGTQ GATGDQNTQQGNTEQNSQNAEQGNTGQEGSNPNQSGQLGATVKPGSATNQDTEVKPNPDQ NNKPTTGQDADQTGQSTHVKPNNNQTATGTQDAIGDQNTQQGNAGNKGNAGNKGNAGNKG NTDKDAKVNTNDDETKTDVKNGTELPETGLSNEHDYTTTVFGSIALISSLLLLRRQRKES K >gi|224999894|gb|ACJC01000106.1| GENE 37 38563 - 39303 196 246 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 108 244 102 242 255 80 31 2e-14 MEQITSAQNSKIKNANKLKKKRERDKTGLALIEGIHLIEEAYQSQIEVIQLFIVDPDRMS SSIVDYAKEVYQINLKVAEALSGTVTPQGFFAIIKKPTYDKTQAKQVLLIDRIQDPGNLG TLIRTADAAGLDLIVMEKGTADPFQDKVIRASQGSIFHIPVIFDDIYNYIHQFNGPVYGT ALENAVSFNDVEAQANFALVLGNEGEGVNPDLLKETTQNLTIPIYGKAESLNVAIAGSIL MYQLKG >gi|224999894|gb|ACJC01000106.1| GENE 38 39671 - 40729 1294 352 aa, chain + ## HITS:1 COG:SA0985 KEGG:ns NR:ns ## COG: SA0985 COG0016 # Protein_GI_number: 15926722 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Staphylococcus aureus N315 # 1 351 1 351 352 650 90.0 0 MTQNDLMSELKQQALVDINEANDAQALQEVKVKYLGKKGSVSALMKNMKDLPNEEKPAYG QKVNELRQTIQSELDERQKLIKEEKLNQQLSEETIDVTLPSRHIEIGSKHPLTRTVEEIE DLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITEEILMRTHTSPVQART MEKRKGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKL FGADREIRLRPSYFPFTEPSVEVDVSCFKCKGQGCNVCKHTGWIEILGAGMVHPNVLEMA GFDSKEYSGFAFGMGPDRIAMLKYGIEDIRHFYTNDVRFLDQFKAVEDRGEQ >gi|224999894|gb|ACJC01000106.1| GENE 39 40729 - 43131 2754 800 aa, chain + ## HITS:1 COG:SA0986_2 KEGG:ns NR:ns ## COG: SA0986_2 COG0072 # Protein_GI_number: 15926723 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Staphylococcus aureus N315 # 159 800 1 642 642 987 77.0 0 MLISNEWLKDYVNVDQSVQALAERITRTGIEVDDIIDYTKDIKKLVVGHVLSKTPHPNAD KLNICQVDLGEEEPVQIVCGAPNVDEGQHVIVAKVGGRLPGGVKIKRAKLRGERSEGMIC SLQEIGISSHVTPKNYESGIYVFPEAVKPGTDALEALYLNDQVMEFDLTPNRADALSMIG TAYEVAALYQTKMNKPQLTSNESQESAKDELTIEVKNEDKVPYYSARVVHDVTIGPSPVW MQFRLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQEQIGSQSIEVRQAKKDETMRTLDG EERRLLDTDIVITNGKDPIALGGVMGGDFSEVTEQTRHVVVEGAIFDPVSIRHTSRRLNL RSESSSRFEKGIATEFVDEAVDRACYLLETYASATVLKDRISYGDLGSFVTPIKITADKV NRTIGFNLTDEEIIDIFEQLGFKTENKNGDIIVNVPSRRKDISIKEDLIEEVARIYGYDD IPSTLPVFKDVTSGELTDRQFKTRTVKETLEGAGLDQAITYSLVSKNHATDFALQNRSTI ELLMPMSEAHSTLRQSLLPHLIDAVSYNVARKNTNVKLYEIGRVFFGNGEGELPDEVEYL SGILTGDFVNNKWQGKKEPVDFYLTKGIVERVAEKLNLQFDFRAGQIDGLHPGRTAIVSL NGKDIGFIGELHPTLAANNDLKRTYVFELNYDAMMEVSVGYINYEPIPRFPGVTRDIALE VNHEVTSSELLSIIHENGEDILNDTLVFDVYEGEHLEKGKKSIAIRLSYLDTENTLTDER VNAVHDKILEALKKHGAIIR >gi|224999894|gb|ACJC01000106.1| GENE 40 43183 - 44109 888 308 aa, chain - ## HITS:1 COG:SA0987 KEGG:ns NR:ns ## COG: SA0987 COG1039 # Protein_GI_number: 15926724 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HIII # Organism: Staphylococcus aureus N315 # 1 298 1 305 312 391 68.0 1e-109 MGNVVYKLTSKEIQSLMAQTTFETTKLPQGMKARTRYQNTVINIYSSGKVMFQGKNAEQV ASQLLPDKQSTTGKHTSSNTTSIQYNHFHCIGSDEAGSGDYFGPLTVCAAYVSQSHIKIL KELGVDDSKKLNDTKIVDLAEQLITFIPHSLLTLDNVKYNERQSLGWSQVKMKAVLHNEA IKNVIQKIEQDQLDYIVIDQFAKREVYQHYALSALPFPDKTKFETKGESKSLAIATASII SRYAFVKHMDHISKKLHMEIPKGASNKVDLIAAKVIQKYDIQQLDTISKKHFKNRDKAIH LINQKYNK >gi|224999894|gb|ACJC01000106.1| GENE 41 44368 - 44634 345 88 aa, chain + ## HITS:1 COG:SA0988 KEGG:ns NR:ns ## COG: SA0988 COG3027 # Protein_GI_number: 15926725 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 88 1 88 88 117 73.0 4e-27 MGEFKNRINVTINDQHFTIIGEDSPEHIRYVAHLVDEKMQELGQKSAGLDTTRKAILTSV NIMHEKVILEEENRRLQQEINQLKQRDE >gi|224999894|gb|ACJC01000106.1| GENE 42 44635 - 45156 291 173 aa, chain + ## HITS:1 COG:SA0989 KEGG:ns NR:ns ## COG: SA0989 COG1286 # Protein_GI_number: 15926726 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Staphylococcus aureus N315 # 18 173 18 173 173 129 50.0 2e-30 MLIDIVVLIIICYFIVIGFRRGIWLSILHFASSIVSLFIASQYYQSIAQRLVVFVPFPKT VAFDMVYTIPYDHLQYRFEKVIAFIIIFGMCKLILYLVVVTFDNIITYKKIHLVSRISSV VLSIIAVFIYLQIGLYLLSLYPHSFIQYQLSQSLLSRVVIEQIPYLSQFILNL >gi|224999894|gb|ACJC01000106.1| GENE 43 45231 - 45522 346 97 aa, chain + ## HITS:1 COG:SA0990_1 KEGG:ns NR:ns ## COG: SA0990_1 COG1796 # Protein_GI_number: 15926727 # Func_class: L Replication, recombination and repair # Function: DNA polymerase IV (family X) # Organism: Staphylococcus aureus N315 # 1 97 1 97 334 140 78.0 6e-34 MTKKDVIQLLEKIAIYMELKGENTFKVSAYRKAAQSLEVDERTLEEIDDVKELKGIGKGV GEVINEFKTKGQSSTLQALQDEVPEGLVPLLKIQGLG Prediction of potential genes in microbial genomes Time: Sun May 29 07:41:13 2011 Seq name: gi|224999893|gb|ACJC01000107.1| Staphylococcus epidermidis W23144 contig00147, whole genome shotgun sequence Length of sequence - 13029 bp Number of predicted genes - 11, with homology - 11 Number of transcription units - 3, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 4/0.000 + CDS 1 - 1401 1467 ## COG1387 Histidinol phosphatase and related hydrolases of the PHP family 2 1 Op 2 3/0.000 + CDS 1411 - 3759 2522 ## COG1193 Mismatch repair ATPase (MutS family) + Prom 3930 - 3989 7.3 3 1 Op 3 4/0.000 + CDS 4018 - 4332 482 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 4339 - 4404 6.2 4 1 Op 4 1/0.000 + CDS 4412 - 6214 1840 ## COG0322 Nuclease subunit of the excinuclease complex + Prom 6405 - 6464 7.3 5 1 Op 5 8/0.000 + CDS 6580 - 7194 450 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit + Term 7266 - 7300 -0.2 + Prom 7237 - 7296 2.3 6 1 Op 6 36/0.000 + CDS 7348 - 9114 2259 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 7 1 Op 7 1/0.000 + CDS 9114 - 9956 977 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit + Term 9968 - 10007 7.1 + Prom 9960 - 10019 6.0 8 2 Op 1 3/0.000 + CDS 10119 - 10922 782 ## COG0796 Glutamate racemase 9 2 Op 2 7/0.000 + CDS 10937 - 11524 384 ## PROTEIN SUPPORTED gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase 10 2 Op 3 . + CDS 11517 - 12026 595 ## COG0622 Predicted phosphoesterase + Term 12067 - 12110 8.7 - TRNA 12262 - 12338 82.5 # Arg TCT 0 0 + Prom 12794 - 12853 4.6 11 3 Tu 1 . + CDS 12877 - 13011 180 ## SERP0737 phenol soluble modulin beta 1 Predicted protein(s) >gi|224999893|gb|ACJC01000107.1| GENE 1 1 - 1401 1467 466 aa, chain + ## HITS:1 COG:SA0990_2 KEGG:ns NR:ns ## COG: SA0990_2 COG1387 # Protein_GI_number: 15926727 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Histidinol phosphatase and related hydrolases of the PHP family # Organism: Staphylococcus aureus N315 # 232 466 1 236 236 394 83.0 1e-109 LYQELQITDKETLQKACEECKVSALNGFAKKTEQNILEAVKAIGAKKDRYPIELMRGLNQ EIVKFIEQLEGVKQYSTAGSFRRYKEMSKDLDFIISTSEPKKVQQQLLRIPNKVKDVAVG DTKISLELAYDDETIGVDFRLIEPAAFYHTLQHFTGSKDHNIRIRQLAKARDEKVSEYGI EQQDGKLLQLQSEEAIYHHFGVDWIAPAMREDGSEFDKDLSQIIQLGDINGDLHMHTTYS DGAFSIKEMIEANIAKGYEFMVITDHSQSLKVAHGLQVDRLLRQNEEIKQLNEEYKEIDI YSGTEMDILPDGTLDYDDEVLAQLDYVIAAIHQSFNQSEDEIMKRLETACRNPYVRHIAH PTGRIIGRRKGYKANIEKLMNLAEETNTILEINANPHRLDLNAEIVRKYPKVKLTINTDA HHTNHLDFMKYGVATAQKGFVNKERVINTMTKEAFRLFVETNKYKK >gi|224999893|gb|ACJC01000107.1| GENE 2 1411 - 3759 2522 782 aa, chain + ## HITS:1 COG:SA0991 KEGG:ns NR:ns ## COG: SA0991 COG1193 # Protein_GI_number: 15926728 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Staphylococcus aureus N315 # 1 782 1 782 782 1239 84.0 0 MRQKTLDVLEFEKIKSFVADETISDLGREKVQEMAPASNFDTVEFQMNETDEISQIYNKH RLPSLSGLAKVSPLVHRASIGGVLNVAELNRIKRLVQVQNQFKTFYNQMLEEDEEVKYPI LHDKMNHLPILTDLFKEINETCDAHDLFDHASYTLQSIRSKISRTNQRIRQNLDRIVKNQ GNQKKLSDAIVTVRNDRNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPNSVVEMNNQISR LRNDEAVERERILTELTGFVSAEADALLIAESVMGQIDFLIAKARYARTIKGTKPTFKED RTIYLPNAFHPLLDKDTVVANTIEFIDDVETVIITGPNTGGKTVTLKTLGLIIVMAQSGL LIPTLDGSQLSIFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILQDADQNSLILFDELGA GTDPSEGAALAMSILDYVRRLGSLVMATTHYPELKAYSYNREGVMNASVEFDVETLSPTY KLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEQEINAMIESLEQNSKRVDQQRIE LDRLVREAQQTHDALSKQYQQYQNYETSLMDEAKEKANQRVKSATKEADEILKELRNLRD HKGAEVKEHELIDKKKQLDDQYEVKSIKQHVQKKKYDTIHTGDEVKVLSYGQKGEVLELV GDEEAVVQMGIIKMKLPIEDLEKTKKKKEKPTKMVTRQNRQTIKTELDLRGYRYEEALNE LDQYLDQAVLSNYEQVYIIHGKGTGALQKGVQQHLKKHKSVRQFRGGMPSEGGFGVTVAE LK >gi|224999893|gb|ACJC01000107.1| GENE 3 4018 - 4332 482 104 aa, chain + ## HITS:1 COG:SA0992 KEGG:ns NR:ns ## COG: SA0992 COG0526 # Protein_GI_number: 15926729 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 104 1 104 104 188 94.0 2e-48 MAIVKVTDSDFDSKIESGVKLVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDEN PSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKHL >gi|224999893|gb|ACJC01000107.1| GENE 4 4412 - 6214 1840 600 aa, chain + ## HITS:1 COG:SA0993 KEGG:ns NR:ns ## COG: SA0993 COG0322 # Protein_GI_number: 15926730 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Staphylococcus aureus N315 # 7 598 1 592 593 1041 87.0 0 MERRSPLEEYQKKIKEKLNVVPLEPGCYLMKDRNDQVIYVGKAKRLRNRLRSYFTGAHDA KTTRLVGEIRNFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSYPFIKITKEKHPR LLVTRTVKKNSGKYFGPYPNAYSAQETKKLLDRIYPFRKCDNMPDKLCLYYHIGQCMGPC VYDVDLEKYAQMTKEITDFLNGEDKTILNHLEERMNKASEQLDFEQAKEYRDMIQHIHNL TKKQKIMSSDNTIRDVFGYSVSKGWMCVQVFFVRQGNMIKRDATMIPIQQTEEEEFYTFI GQFYSLNQHLIPKEVHVPKNLDKDIIQSVVDTKIVQPVRGAKKDMINLANHNAEVQLDNK FELIARDESRTIKAIEELGERMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPHKKDY RKYKIKTVEGPDDYKSMREVVRRRYTRVLNEGLPLPDLIIVDGGKGHMNGVMDVLENELG LDIPVAGLQKNDKHQTSELLYGASAEIVPLKKNSQAFYLLHRIQDEVHRFAITFHRQTRQ KTGLKSVLDDIDGIGTKRKTSLLRTFGSIKKMKEASFDELRQAGLPEKVAKNLQNALQNK >gi|224999893|gb|ACJC01000107.1| GENE 5 6580 - 7194 450 204 aa, chain + ## HITS:1 COG:SA0994 KEGG:ns NR:ns ## COG: SA0994 COG2009 # Protein_GI_number: 15926731 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Staphylococcus aureus N315 # 1 204 1 204 204 317 86.0 8e-87 MAQSKNEFYLRRLHSLLGVIPIGAFLIVHLMVNHQATQGAEAFNRASGFMESLPFLIVME FILIYIPLLYHGLFGLHIAFTAKENIGHYSLFRNWMFFFQRVSGILAFIFIAMHLWQTRL QKAFYGKSVDYNLMHETLQHPLWAIFYIICVIAVVFHFANGLWSFCVTWGFLQSKKSQRV FTWISLIVFLVISYIGVAAVIAFI >gi|224999893|gb|ACJC01000107.1| GENE 6 7348 - 9114 2259 588 aa, chain + ## HITS:1 COG:SA0995 KEGG:ns NR:ns ## COG: SA0995 COG1053 # Protein_GI_number: 15926732 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Staphylococcus aureus N315 # 1 588 1 588 588 1140 92.0 0 MAEKKIIVVGGGLAGLMSTIKAAEQGAHVDLFSIVPVKRSHSVCAQGGINGAVNTKGEGD SPWIHFDDTVYGGDFLANQPPVKAMADAAPKIIHLLDRMGVMFNRTKEGLLDFRRFGGTL HHRTAFAGATTGQQLLYALDEQVRSFEVDGLVTKYEGWEFLGIVKDEEDAARGIVAQNMT TSEIQSFGSDAVIMATGGPGIIFGKTTNSMINTGSAASIVYQQGAIYANGEFIQIHPTAI PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDIATREIFDVCINQK LGINGENMVYLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYV DYDQMTNIKGLFAAGECDFSQHGGNRLGANSLLSAIYGGTVAGPNAIKYVENVEKSYTDL DDSIFEARVKEEKEKFDHLLNMRGTENAYKLHRELGEIMTANVTVVRENEKLLETDKKIQ ELMKRYEDIDMEDTQTWSNQAVFFTRQLWNMLVLARVITIGAYNRNESRGAHYKPEFPER NDEEWLKTTMARYKGRSEKPEFTYEPVDVSLIPPRKRDYTSKSKGGNK >gi|224999893|gb|ACJC01000107.1| GENE 7 9114 - 9956 977 280 aa, chain + ## HITS:1 COG:SA0996 KEGG:ns NR:ns ## COG: SA0996 COG0479 # Protein_GI_number: 15926733 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Staphylococcus aureus N315 # 1 280 1 271 271 489 87.0 1e-138 MADQSLKETPKTQSNPQTQVQGQNQQPKQKTVKLIIKRQDNSESKPYEESFEIPYKENLN VIACLMEIRRNPVNSKGEKTTPVTWDMNCLEEVCGACSMVINGRARQSCSAIVDQLEQPI RLEPMSTFPVIRDLQVDRSRMFDNLKRMKAWIPIDGTYDLGPGPRMPEKKRQTAYELSKC MTCGVCLEVCPNVTKNNKFVGAQAISQVRLFDLHPTGSMTKDERLDALMSAGGLQECGNS QNCVNACPKGIPLTTSIAAMNRETSFHMFKSFFGSDHQVD >gi|224999893|gb|ACJC01000107.1| GENE 8 10119 - 10922 782 267 aa, chain + ## HITS:1 COG:SA0997 KEGG:ns NR:ns ## COG: SA0997 COG0796 # Protein_GI_number: 15926734 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Staphylococcus aureus N315 # 1 266 1 266 266 479 86.0 1e-135 MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIARCPYGPRPGEEVKKFTTELAQKL MEFDIKMLVIACNTATAVALDYLQNILPIPVIGVIEPGARTAIMTTKNQNVLVLGTEGTI KSEAYRTHIKKINPNVNVYSVACPGFVPLVEQMRYKDPTITNIVIHQTLKQWRNSDADTV ILGCTHYPLLYQPIYEYFSGTKTVISSGLETAREVSALLTFSNEHASYTEHPQHRFFATG DTTHIKNIIDEWLNMKVEVKRITVNDS >gi|224999893|gb|ACJC01000107.1| GENE 9 10937 - 11524 384 195 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella sonnei Ss046] # 1 189 1 194 197 152 46 1e-36 MEDIVIATNNQGKINDFKAIFKNQNVIGISELIEDFDVEETGATFEENAKLKSEAAAHAL NKRVIADDSGLEVFALNGEPGVYSARYAGLGKNDEDNIEKLLTNLEDVQDRRAQFVCVIS MSAPNEKTKTFKGTVSGVITTERHGKNGFGYDPIFFVPELNKTMAEITNDEKGKISHRGN AILLLKEYLEGEQHV >gi|224999893|gb|ACJC01000107.1| GENE 10 11517 - 12026 595 169 aa, chain + ## HITS:1 COG:SA0999 KEGG:ns NR:ns ## COG: SA0999 COG0622 # Protein_GI_number: 15926736 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Staphylococcus aureus N315 # 1 162 1 162 167 226 69.0 2e-59 MSKWIILSDNHKETGILYHIYDLHKDADKFLHLGDSEFSYNDTELSLYQRVKGNCDFYPE FLEEAITEENGVRAFYTHGHLYQVNQTRMKLAEKAKELGCLFAFYGHTHVAKYEQIGGIH VINPGSISQSRSQIEETFAELVYKDHENTIILNFRNRENQVIETVKIEY >gi|224999893|gb|ACJC01000107.1| GENE 11 12877 - 13011 180 44 aa, chain + ## HITS:1 COG:no KEGG:SERP0737 NR:ns ## KEGG: SERP0737 # Name: not_defined # Def: phenol soluble modulin beta 1 # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 44 1 44 44 69 100.0 3e-11 MEQLFDAIRSVVDAGINQDWSQLASGIAGIVENGISVISKLLGQ Prediction of potential genes in microbial genomes Time: Sun May 29 07:41:16 2011 Seq name: gi|224999892|gb|ACJC01000108.1| Staphylococcus epidermidis W23144 contig00148, whole genome shotgun sequence Length of sequence - 2669 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 34 - 168 164 ## SERP0738 phenol soluble modulin beta 1 + Term 185 - 218 4.5 + Prom 183 - 242 5.3 2 2 Tu 1 . + CDS 275 - 961 461 ## COG1011 Predicted hydrolase (HAD superfamily) + Term 992 - 1057 11.7 3 3 Tu 1 . - CDS 1068 - 1508 374 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 1754 - 1813 11.6 + Prom 1604 - 1663 8.1 4 4 Tu 1 . + CDS 1691 - 2669 621 ## COG4365 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|224999892|gb|ACJC01000108.1| GENE 1 34 - 168 164 44 aa, chain + ## HITS:1 COG:no KEGG:SERP0738 NR:ns ## KEGG: SERP0738 # Name: not_defined # Def: phenol soluble modulin beta 1 # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 44 1 44 44 72 100.0 5e-12 MSKLAEAIANTVKAAQDQDWTKLGTSIVDIVESGVSVLGKIFGF >gi|224999892|gb|ACJC01000108.1| GENE 2 275 - 961 461 228 aa, chain + ## HITS:1 COG:SA1018 KEGG:ns NR:ns ## COG: SA1018 COG1011 # Protein_GI_number: 15926758 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Staphylococcus aureus N315 # 1 227 1 227 228 250 57.0 2e-66 MKFKNILFDFDDTLVDFYDAEKKAFYNLAQKYNHQPSQQDFEHFRKVNQAHWEAFQQNKL TKDEVLSQRFINYFNDYHIHVNGKEADECFRDELAKAPVKLFDHTLEVIQQLKLNHSLYI VTNGVTETQLRRIAQTQFNEIFQDVFISEQTGFQKPMTEFFDFVFEHIGENNRNQTLIVG DSLTSDILGGKNANISTCWFNIRQKENHTSIQPDYIINDLSEMVHIVE >gi|224999892|gb|ACJC01000108.1| GENE 3 1068 - 1508 374 146 aa, chain - ## HITS:1 COG:SA1019 KEGG:ns NR:ns ## COG: SA1019 COG0454 # Protein_GI_number: 15926759 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 146 1 146 146 207 70.0 4e-54 MGEVKHLQINYKTDELFADFREFGNKNLYMIEELKGQMIDASSDSPFYGIFVGNKLVARM ALLDKGEVEETYFPNSNDYILLWKLEVLDTYQRRGYAKQLLNFAKENKKPIKAIARNNSK AFFLTQGFKDVATKNPEGHDILIWNP >gi|224999892|gb|ACJC01000108.1| GENE 4 1691 - 2669 621 326 aa, chain + ## HITS:1 COG:SA1020 KEGG:ns NR:ns ## COG: SA1020 COG4365 # Protein_GI_number: 15926760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 324 1 324 537 381 57.0 1e-105 MKCNTLKLTEQDQFINKIKNSESQITSFYEYDASQKESFDRRLKTPNNGREFHLSRVIKS YMNELNLTHQQLNNIDALADGAKVVIGGQQAGLFGGPLYTFHKIFSIIILSRQLSEKYDT PIVPVFWIAGEDHDFEEVNHTYAFNNKETTLKKVKYHTMTPPDSNVSRYTPDKNELKASL NHFFKEIKETVHTQDVYQMCVNIINQYDSWTDIFKGLIHEVFKDYGILLIDAQYPELRQM EKPLFKEILEKRDQVDQSFRETQIRTTQQQLPSMIQTETNTHLFIHEDGMRQLLNFDGTY FKLNKTEKRYTKQNLLDIIEREPERI Prediction of potential genes in microbial genomes Time: Sun May 29 07:41:36 2011 Seq name: gi|224999891|gb|ACJC01000109.1| Staphylococcus epidermidis W23144 contig00149, whole genome shotgun sequence Length of sequence - 58753 bp Number of predicted genes - 55, with homology - 55 Number of transcription units - 17, operones - 11 average op.length - 4.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 3/0.167 + CDS 3 - 635 529 ## COG4365 Uncharacterized protein conserved in bacteria + Term 652 - 692 9.2 + Prom 670 - 729 5.9 2 2 Op 1 29/0.000 + CDS 779 - 1210 553 ## COG2001 Uncharacterized protein conserved in bacteria 3 2 Op 2 7/0.000 + CDS 1225 - 2160 969 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 4 2 Op 3 7/0.000 + CDS 2173 - 2574 375 ## COG4839 Protein required for the initiation of cell division 5 2 Op 4 4/0.167 + CDS 2555 - 4882 2596 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Prom 4959 - 5018 9.6 6 3 Op 1 28/0.000 + CDS 5071 - 6036 996 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase 7 3 Op 2 1/0.833 + CDS 6038 - 7387 1276 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 8 3 Op 3 25/0.000 + CDS 7403 - 8794 1414 ## COG1589 Cell division septal protein + Prom 8800 - 8859 6.8 9 3 Op 4 35/0.000 + CDS 8900 - 10294 1947 ## COG0849 Actin-like ATPase involved in cell division 10 3 Op 5 5/0.167 + CDS 10327 - 11511 1722 ## COG0206 Cell division GTPase + Term 11545 - 11582 5.4 + Prom 11696 - 11755 9.8 11 4 Op 1 7/0.000 + CDS 11927 - 12718 704 ## COG1496 Uncharacterized conserved protein 12 4 Op 2 14/0.000 + CDS 12744 - 13412 603 ## COG0325 Predicted enzyme with a TIM-barrel fold 13 4 Op 3 12/0.000 + CDS 13426 - 14019 523 ## COG1799 Uncharacterized protein conserved in bacteria 14 4 Op 4 7/0.000 + CDS 14031 - 14321 283 ## COG0762 Predicted integral membrane protein + Term 14359 - 14400 5.0 + Prom 14326 - 14385 4.1 15 4 Op 5 6/0.000 + CDS 14577 - 15239 1116 ## PROTEIN SUPPORTED gi|57866705|ref|YP_188339.1| ylmH protein 16 4 Op 6 6/0.000 + CDS 15262 - 15918 900 ## COG3599 Cell division initiation protein + Prom 15963 - 16022 9.2 17 4 Op 7 . + CDS 16232 - 18982 3089 ## COG0060 Isoleucyl-tRNA synthetase + Term 19046 - 19104 19.0 + Prom 19639 - 19698 5.2 18 5 Op 1 . + CDS 19751 - 20548 748 ## COG2514 Predicted ring-cleavage extradiol dioxygenase 19 5 Op 2 . + CDS 20553 - 21023 496 ## COG3942 Surface antigen 20 5 Op 3 15/0.000 + CDS 21064 - 21597 397 ## COG0597 Lipoprotein signal peptidase 21 5 Op 4 4/0.167 + CDS 21600 - 22517 1320 ## COG0564 Pseudouridylate synthases, 23S RNA-specific + Term 22730 - 22769 0.4 + Prom 22739 - 22798 6.6 22 6 Op 1 7/0.000 + CDS 22819 - 23346 620 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase + Term 23520 - 23563 5.6 + Prom 23459 - 23518 5.6 23 6 Op 2 6/0.000 + CDS 23579 - 24886 1049 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 24 6 Op 3 15/0.000 + CDS 24912 - 25793 863 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 25 6 Op 4 7/0.000 + CDS 25811 - 27088 1494 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 26 6 Op 5 24/0.000 + CDS 27089 - 28189 1126 ## COG0505 Carbamoylphosphate synthase small subunit 27 6 Op 6 3/0.167 + CDS 28182 - 31355 3545 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 28 6 Op 7 9/0.000 + CDS 31384 - 32082 733 ## COG0284 Orotidine-5'-phosphate decarboxylase 29 6 Op 8 . + CDS 32083 - 32694 636 ## COG0461 Orotate phosphoribosyltransferase 30 6 Op 9 . + CDS 32720 - 32926 221 ## SERP0772 hypothetical protein + Term 32949 - 32997 9.5 + Prom 33357 - 33416 7.6 31 7 Tu 1 . + CDS 33467 - 33874 585 ## COG3865 Uncharacterized protein conserved in bacteria + Term 33884 - 33938 10.3 - Term 33872 - 33926 10.3 32 8 Tu 1 . - CDS 33937 - 35634 1698 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP - Prom 35774 - 35833 7.6 + Prom 35707 - 35766 7.8 33 9 Op 1 25/0.000 + CDS 35904 - 36527 667 ## COG0194 Guanylate kinase 34 9 Op 2 10/0.000 + CDS 36527 - 36739 311 ## COG1758 DNA-directed RNA polymerase, subunit K/omega + Term 36753 - 36806 7.2 + Prom 37186 - 37245 4.2 35 10 Op 1 5/0.167 + CDS 37278 - 38477 1365 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase 36 10 Op 2 . + CDS 38477 - 40885 1980 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase + Term 40908 - 40955 3.4 - Term 40896 - 40943 3.4 37 11 Tu 1 . - CDS 40991 - 41194 342 ## COG2314 Predicted membrane protein - Prom 41235 - 41294 9.2 + Prom 41199 - 41258 8.9 38 12 Op 1 26/0.000 + CDS 41416 - 41904 617 ## COG0242 N-formylmethionyl-tRNA deformylase 39 12 Op 2 20/0.000 + CDS 41897 - 42829 1007 ## COG0223 Methionyl-tRNA formyltransferase 40 12 Op 3 4/0.167 + CDS 42829 - 44133 1029 ## COG0144 tRNA and rRNA cytosine-C5-methylases 41 12 Op 4 5/0.167 + CDS 44136 - 45230 955 ## COG0820 Predicted Fe-S-cluster redox enzyme 42 12 Op 5 17/0.000 + CDS 45237 - 45980 658 ## COG0631 Serine/threonine protein phosphatase 43 12 Op 6 7/0.000 + CDS 45977 - 47977 1868 ## COG0515 Serine/threonine protein kinase + Term 48100 - 48146 8.6 + Prom 48174 - 48233 5.0 44 13 Op 1 10/0.000 + CDS 48270 - 49160 653 ## COG1162 Predicted GTPases 45 13 Op 2 6/0.000 + CDS 49161 - 49805 726 ## COG0036 Pentose-5-phosphate-3-epimerase 46 13 Op 3 . + CDS 49810 - 50445 559 ## COG1564 Thiamine pyrophosphokinase + Term 50453 - 50487 3.8 - Term 50439 - 50477 7.1 47 14 Tu 1 . - CDS 50529 - 50717 324 ## PROTEIN SUPPORTED gi|27467817|ref|NP_764454.1| 50S ribosomal protein L28 - Prom 50809 - 50868 10.1 + Prom 50805 - 50864 8.7 48 15 Op 1 9/0.000 + CDS 51075 - 51449 492 ## COG1302 Uncharacterized protein conserved in bacteria 49 15 Op 2 4/0.167 + CDS 51464 - 53122 1810 ## COG1461 Predicted kinase related to dihydroxyacetone kinase + Term 53159 - 53209 12.6 + Prom 53187 - 53246 7.4 50 16 Tu 1 . + CDS 53326 - 55374 2343 ## COG1200 RecG-like helicase + Prom 55392 - 55451 4.9 51 17 Op 1 4/0.167 + CDS 55484 - 56095 541 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 52 17 Op 2 5/0.167 + CDS 56097 - 57074 1299 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 53 17 Op 3 26/0.000 + CDS 57076 - 58005 1136 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 54 17 Op 4 10/0.000 + CDS 57998 - 58390 82 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 55 17 Op 5 . + CDS 58374 - 58733 195 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 Predicted protein(s) >gi|224999891|gb|ACJC01000109.1| GENE 1 3 - 635 529 210 aa, chain + ## HITS:1 COG:SA1020 KEGG:ns NR:ns ## COG: SA1020 COG4365 # Protein_GI_number: 15926760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 209 328 536 537 295 71.0 5e-80 NNVVTRPVVEEWLFNTVAFIGGPSEIKYWAELKGVFDTLNVEMPIVMPRLRITYLYARTK KLLKQYNLSIESVIANGVEQERQRFVREKASNNFINEVEEMKTQQQELYNNLLTYVENNH DNQLLLEKNNQIHLNQYDYLIKRYLLNIERENDISMRQFREISETLHPMGGLQERVWNPL QIMNDFGIDVFSPSTYPPLSYSFDHLIIKH >gi|224999891|gb|ACJC01000109.1| GENE 2 779 - 1210 553 143 aa, chain + ## HITS:1 COG:SA1021 KEGG:ns NR:ns ## COG: SA1021 COG2001 # Protein_GI_number: 15926761 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 143 1 143 143 250 97.0 5e-67 MFMGEFDHQLDTKGRMIIPSKFRYDLNERFIITRGLDKCLFGYTLEEWQQIEEKMKTLPM TKKDARKFMRMFFSGAVEVELDKQGRINIPQNLRKYANLSKECTVIGVSNRIEIWDRETW NDFYDESEESFEDIAEDLIDFDF >gi|224999891|gb|ACJC01000109.1| GENE 3 1225 - 2160 969 311 aa, chain + ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 1 311 1 311 311 561 89.0 1e-160 MFHHVSVMLNETIDYLNIKEDGVYVDCTLGGAGHALYLLNQLNDKGRLIAIDQDLTAIEN AKEVLKEHLHKVTFVHNNFRELTNILNELEIDKVDGIYYDLGVSSPQLDVPERGFSYHND AKLDMRMDQTQSLSAYEVVNQWSYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL ELVDVIKEGIPAKARRKGGHPAKRVFQAIRIAVNDELSAFEDSVEQAIECVKVGGRISVI TFHSLEDRLCKQIFQEFEKGPDVPRGLPVIPEAYTPKLKRVNRKPITATDDDLNENNRAR SAKLRVAEILK >gi|224999891|gb|ACJC01000109.1| GENE 4 2173 - 2574 375 133 aa, chain + ## HITS:1 COG:SA1023 KEGG:ns NR:ns ## COG: SA1023 COG4839 # Protein_GI_number: 15926763 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein required for the initiation of cell division # Organism: Staphylococcus aureus N315 # 1 133 1 133 133 178 84.0 3e-45 MAVEKIYQPYDEATQTSIPQRQPQSSPEKQTVKRKVVVQLTRFEKILYIALITVIALISI YMLSLKMDAYDTRGKIADLDQKIEKQSSENSALKSEIKKNSSYERIYDKAKKQGMSLEND NVKVVRNNGEAKN >gi|224999891|gb|ACJC01000109.1| GENE 5 2555 - 4882 2596 775 aa, chain + ## HITS:1 COG:SA1024 KEGG:ns NR:ns ## COG: SA1024 COG0768 # Protein_GI_number: 15926764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Staphylococcus aureus N315 # 28 715 28 715 744 1098 81.0 0 MAKRKIKIKKNKIGAVLLVGLFGLLFFILVLRFSYIMITGHSNGQDLIMKANEKYLVKNS QQPERGKIYDRNGKVLAEDVERYKLVAVVDKKASKESKKPRHVVDKKKTAKKLAEIIDMD ADEIEKRLNNKKAFQIEFGQKGTNLTYQEKEKIEKMKLPGIALYPETERFYPNGNFASHL IGMAQKDPDTGELNGALGVEKIFNSYLNGSRGALKYIHDIWGYIAPNTKKEQQPKRGDDV HLTIDSNIQVFVEEALDDMVERYAPKDLFAVVMDAKTGEILAYSQRPTFNPETGKDFGKK WANDLYQNTYEPGSTFKTYGLAAAIQEGKFKPDEKYKSGQRNIMGSEISDWNKTGWGRIP MSLGFTYSSNTLMMHLQDLVGADKMKSWYERFGFGKKTGGMFDGEAAGNIGWANELQQKT SAFGQSTTVTPAQMIQAQSAFFNKGNMLKPWFVSSIDNPITKKNYYSGKKEFAGKPVTQE TANKVEEELDKVVNSKKSHAMNYRVKGYDIEGKTGTAQVADSNGGGYVKGENPYFVSFMG DAPKKDPKVIVYAGMSLAQKNDQEAYEMGVSKAFKPIMENTLKYLNVGKSSDTSSKTDYS KVPNVQGDEVQKAEDSVNAQSLKPITIGNGKQIKQQSVKSGTKVLPHSKVMLMTDGELTM PDMTGWTKEDVLAFEDLTKIKVSTKGNGFVTNQSISKGQIIKNKDKIEVSLSAEDTDDDQ EKTDEDSSDKKSKKDKVDEDNSNASSSSKNEKSNADSKNDSDDSTNETSGSERNN >gi|224999891|gb|ACJC01000109.1| GENE 6 5071 - 6036 996 321 aa, chain + ## HITS:1 COG:SA1025 KEGG:ns NR:ns ## COG: SA1025 COG0472 # Protein_GI_number: 15926765 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Staphylococcus aureus N315 # 1 321 1 321 321 469 87.0 1e-132 MIFIYAIIALLITFILVPILIPTLKRMKFGQSIREEGPQSHMKKTGTPTMGGLTFLISII ITSIIAIIFVDHSNPIILLLFVTIGFGLIGFIDDYIIVVKKNNQGLTSKQKFLAQIIIAV IFFVLSDVFHLVHFTTDLHIPFVNFDIPLSFAYVIFIVFWQVGFSNAVNLTDGLDGLATG LSIIGFAMYAVMSYMLDSPAIGIFCIIMIFALLGFLPYNLNPAKVFMGDTGSLALGGIFA TISIMLNQELSLILIGFVFVVETLSVMLQVASYKLTKKRIFKMSPIHHHFELSGWGEWKV VTVFWTVGLITGLIGLWIGVH >gi|224999891|gb|ACJC01000109.1| GENE 7 6038 - 7387 1276 449 aa, chain + ## HITS:1 COG:SA1026 KEGG:ns NR:ns ## COG: SA1026 COG0771 # Protein_GI_number: 15926766 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Staphylococcus aureus N315 # 1 449 1 449 449 805 89.0 0 MLNYTELENKNVLVVGLAKSGYEAAKLLLKLGANVKVNDGKDLSQDAHAKDLESMGIEVI SGSHPFSLLDDNPIIVKNPGIPYTVSIIEEAAKRGLKILTEVELSYLISEAPIIAVTGTN GKTTVTSLIGDMFQKSVLTGRLSGNIGYVASNVAQEVKSDEYLITELSSFQLLGIEKYKP HIAIITNIYSAHLDYHETLENYQNAKKQIYKNQTKDDYLICNYHQRHLIESENLEAKTFY FSTQQEVDGIYIKDGFIVFNGIRIINTKDLVLPGEHNLENILAAVLASIIAGVPVKAIVD SLVTFSGIDHRLQYIGTNRTNKYYNDSKATNTLATQFALNSFDQPIIWLCGGLDRGNEFD ELIPYMENVRVMVVFGETQDKFAKLGNSQGKYVIKATDVEDAVDKIQDIVEPNDVVLLSP ACASWDQYHTFEERGEKFIDRFRAHLPSY >gi|224999891|gb|ACJC01000109.1| GENE 8 7403 - 8794 1414 463 aa, chain + ## HITS:1 COG:SA1027 KEGG:ns NR:ns ## COG: SA1027 COG1589 # Protein_GI_number: 15926767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Staphylococcus aureus N315 # 18 463 2 439 439 295 51.0 1e-79 MEENKNQPNNENMSNKDDNTIHLNDSQSNEDLELFRRNKNARQRRRRRIDNQSKEKDATS TQSQLETKPMDKFIDNHKSHNQDKEIKSDLIEDNVNDEDDNQKYNNDKLNDRSVQQTSET RQSNEDEEEFLTDHQSEKQTKDSRHSKKHKLLSKFTSKKEKETFTSFNSNEKVTQIKPLS LEEKRAIRRKKQKRIQYTIITLLILIIVLILLYMFTPLSKISNVNIKGNNNVSTSKIKKE LNVTSRSRMYTFSKNKAIRNLKQNPLIKEVDIHKQLPNTLTVNVTEYQIVGLEKNKDKYV PIIEDGKELTEYKDEVSHDGPIIDGFKGDKKTRIIKALSEMSPKVRNLIAEVSYAPTKNK QSRIKIFTKDNMQVIGDITTIADKMQYYPQMSQSLSRDDSGELKTNGYIDLSVGASFIPY QGSSTVQSGTEQNVTKSTQEENDAKEELQNVLNKINKQSKENN >gi|224999891|gb|ACJC01000109.1| GENE 9 8900 - 10294 1947 464 aa, chain + ## HITS:1 COG:SA1028 KEGG:ns NR:ns ## COG: SA1028 COG0849 # Protein_GI_number: 15926768 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Staphylococcus aureus N315 # 1 464 1 470 470 685 86.0 0 MEEHYYVSIDIGSSSVKTIVGEKFHNGINVIGTGQTYTSGIKNGLIDDFDIARQAIKDTI KKASIASGVDIKDVFLKLPIIGTEVYDESNEIEFYEDTEIDGTHIESVLEGIRDKNDVPE TEVINVFPIRFVVDKDNEVSDPKELIARHSLKVDAGVIAIQKSILINMIKCVEACGVDVL DVYSDAYNYGSILTPTEKELGACVIDIGEDLTQVAFYERGELVDAESIEMAGRDITDDIA QGLNTTYDTAEKVKHQYGHAFYDSASDQDVFSVDQVDSDEHVQYTQKDLSDFIEQRVEDI FFEVFDVLQELGLTKVNGGFVVTGGSANLLGVKELLQDMVSEKVRIHTPSQMGIRKPEFS SAISTISSSIAFDELLDYVTISYQDNEEFEEEVIESDKDSETKSSGFDWFKRKSNKKEND EVAPEAPREESYEDRENHLEDEQQTEGKAKEESKFKKLMKSLFE >gi|224999891|gb|ACJC01000109.1| GENE 10 10327 - 11511 1722 394 aa, chain + ## HITS:1 COG:SA1029 KEGG:ns NR:ns ## COG: SA1029 COG0206 # Protein_GI_number: 15926769 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Staphylococcus aureus N315 # 1 381 1 377 390 558 92.0 1e-159 MLEFEQGFNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKAESKIQ IGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVTAGMGGGTGTGAAPVVAKI AKEMGALTVGVVTRPFGFEGRKRQTQAAAGVESMKAAVDTLIVIPNDRLLDIVDKSTPMM EAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEA AKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVINP ELQDEIVVTVIATGFEDKPSSQGRKATSTGFGSSVNSSSNHQSGASAKEDSFSAHTSHSQ SSESVSERSHTTKDDDIPSFIRNREERRSRRTRR >gi|224999891|gb|ACJC01000109.1| GENE 11 11927 - 12718 704 263 aa, chain + ## HITS:1 COG:SA1030 KEGG:ns NR:ns ## COG: SA1030 COG1496 # Protein_GI_number: 15926770 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 263 1 263 263 343 65.0 1e-94 MKERFIKKTHYLDYQFDEHTDIKLGFTTRENGLSPYPNHSFNMARYISDSAHHITHHQDI LANLIGYPRDEWVFPIQTHDNRIVEVTSEHKGTNIDKLTDDLHGIDGMYTFDSHILLTMC YADCVPVYFYSESHGYIGLAHAGWRGTYGQIVKEMLKKVDFDYEDLKIVIGPATSNSYEI NDDIKNKFEELTIDSTLYIESRGKNKHGIDLKKANALLLEEAGVPSKNIYITEYSTSENL DLFFSYRVEKGQTGRMLAFIGRK >gi|224999891|gb|ACJC01000109.1| GENE 12 12744 - 13412 603 222 aa, chain + ## HITS:1 COG:SA1031 KEGG:ns NR:ns ## COG: SA1031 COG0325 # Protein_GI_number: 15926771 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Staphylococcus aureus N315 # 1 222 1 222 224 321 74.0 6e-88 MDVKENLAKIETEIDASVKKSAHSAQPHVIAVTKYVTIERAREAYKAGIRHFGENRLDGF KGKKESLPSDIKLHFIGSLQSRKVKDIINEVDYFHALDRLSLAKEINKRANHVIKCFLQV NVSGEKSKHGIALEEVNQFINQIKEYENIQIIGLMTMAPLTDDLSYIKNLFKELRHKRNE IQQFNLAHAPCTELSMGMSNDYQMAVEEGATFVRIGTKLVGE >gi|224999891|gb|ACJC01000109.1| GENE 13 13426 - 14019 523 197 aa, chain + ## HITS:1 COG:SA1032 KEGG:ns NR:ns ## COG: SA1032 COG1799 # Protein_GI_number: 15926772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 197 4 187 187 224 71.0 1e-58 MALKDLFNNFFVVEEEEEVEGPEERESSRSRERVQEREDYNRNENQATPQTFNNKQQAIK SVPQKNTLRSNTTSEERNYRMNNNSKNNSRNVVTMNQASQSYTAQESSKMCLFEPRVFSD TQDIADELKNRRATLVNLQRIDQVSAKRIIDFLSGTVYAIGGDIQRVGTDIFLCTPDNVE VAGSITDHIENMEQHYE >gi|224999891|gb|ACJC01000109.1| GENE 14 14031 - 14321 283 96 aa, chain + ## HITS:1 COG:SA1033 KEGG:ns NR:ns ## COG: SA1033 COG0762 # Protein_GI_number: 15926773 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Staphylococcus aureus N315 # 1 95 1 95 96 97 76.0 5e-21 MDIGLLSTIFRFIIFLVQIYYFGMIIYFFTSWVPSIRESKFGEFLGKLYEPFLEPFRKII PPIGFIDISSIAAIFVLVLFQSGLVKIFNLILAYLS >gi|224999891|gb|ACJC01000109.1| GENE 15 14577 - 15239 1116 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|57866705|ref|YP_188339.1| ylmH protein [Staphylococcus epidermidis RP62A] # 1 220 1 220 220 434 99 1e-121 MDPRGQYILEVITRSYQDLHVTFFGGPHAERKRAIIAPLYFKPQPEDFELTLFELQYPKK FVTIQHQHVLGTLMSLGIQRDQLGDIIVGEDIQFVLTKQLESYIISELTRIKGATVKLNS IPTEDMIQSEENWKVHSTTVSALRLDVVLKEIIHKSRNIAQQLIIKKRVKVNHTVIDSTD FQLEQNDLLSIQGYGRAQIVEIGGKTKKNKLHIHYQTLFK >gi|224999891|gb|ACJC01000109.1| GENE 16 15262 - 15918 900 218 aa, chain + ## HITS:1 COG:SA1035 KEGG:ns NR:ns ## COG: SA1035 COG3599 # Protein_GI_number: 15926775 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Staphylococcus aureus N315 # 1 178 1 178 205 215 85.0 5e-56 MPFTPSEIKNKEFTRVKNGLEPTEVANYLEQLSNEIERLKEDKKQLEKVIEDRDSNIKSY KDVHQSVSDALIQAQKVGEETKQAATKEAEAVLSKAQVQADSIVNDAIEKARRLAFQTED MKRQSKVFRSRFRMLVEAQLDLLKSEDWDYLLNYDLDAEQVTLEDIHHLNENDLTPEERA MKQKQNQELSANQPSTSSSESVSQSNTNSESSQSTSNN >gi|224999891|gb|ACJC01000109.1| GENE 17 16232 - 18982 3089 916 aa, chain + ## HITS:1 COG:SA1036 KEGG:ns NR:ns ## COG: SA1036 COG0060 # Protein_GI_number: 15926776 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 916 1 917 917 1692 88.0 0 MNYKDTLLMPKTDFPMRGGLPNKEPQIQEMWDNDDQYRKALEKNKNNPSFILHDGPPYAN GNLHMGHALNKIIKDFIVRYKTMKGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSVAEF REKCKEFALKQIDIQKKDFKRLGVRGDFINPYITLTPEYEAAQIRLFGEMADKGLIYKGK KPVYWSPSSESSLAEAEIEYHDKRSASIYVAFDVKDSKGKVDSDAQFIIWTTTPWTIPSN VAITVHPELKYGQYNVDGHKYIVAQALSEEVAEALGWDKDSIQLEKEFTGKELEFVEAQH PFLDRVSLVINGEHVTTDAGTGCVHTAPGHGEDDYIVGQKYDLPVISPLNDKGVFTEEGG PFEGMFYDKANKAVTDLLKEKDALLKLDFITHSYPHDWRTKKPVIFRATPQWFASINKVR QDILDAIEDTNFKVDWGKTRIYNMIRDRGEWVISRQRVWGVPLPVFYAENGDIIMTKETV NHVADLFEKHGSNIWFEKEAKELLPEGFSHPGSPNGEFTKETDIMDVWFDSGSSHRGVLE TRHELSFPADLYFEGSDQYRGWFNSSITTAVATRGQAPYKFLLSHGFVMDGEGKKMSKSL GNVIVPDQVVKQKGADIARLWVSSTDYLSDVRISDEILKQTSDVYRKIRNTLRFMLGNIN DFNPETDSIAETNLLEVDRYLLNRLREFTASTINNYENFDYLNIYQEVQNFINVELSNFY LDYGKDILYIEKKDSHKRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVH LSDMPKVVDVDEELLEKWNTFMNLRDDVNRALEQARNEKVIGKSLEAKVVIGSNESFNTA EFLQQFNDLQQLFIVSQVEVKDKVNDGVSYQYGDIHIKHAEGEKCERCWNYTEELGSVGE LEHLCPRCQEVVKTLV >gi|224999891|gb|ACJC01000109.1| GENE 18 19751 - 20548 748 265 aa, chain + ## HITS:1 COG:SA1037 KEGG:ns NR:ns ## COG: SA1037 COG2514 # Protein_GI_number: 15926777 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Staphylococcus aureus N315 # 1 263 1 262 265 353 61.0 2e-97 MFHNKNANFVNGVTINIKDKETIKTFYENVLGFNLINESKTAVQFEVGDSNQFITFIEIQ NGREPLMSEAGLFHIGILLPTLTTLADLLVHLSDFEVPVNGGQQSVATCLFIEDPEGNAI KFYVDRETESWIDEKEGRIRMDIAPINVPRLLQNVSHTQWQGIPDETKLGSLHIKSIRIS DVKSYYLHYFGLEESAYMDDYSLFLSSNDYYNHLAVNQWLSATKRVDNEHTYGLAMIDFH YPKTTHKNLKGPDGIYFRFNRIKEV >gi|224999891|gb|ACJC01000109.1| GENE 19 20553 - 21023 496 156 aa, chain + ## HITS:1 COG:SA0270 KEGG:ns NR:ns ## COG: SA0270 COG3942 # Protein_GI_number: 15925983 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 43 150 190 297 297 115 50.0 3e-26 MKKAIIVMVVVSVILTIAAVIDEFIIQDMKRVQSRFTSHHPMKINTYKKGQCTYYVFERV KNDGNKINNTWSDAKNWDKKAIDDGYIVDRNPKKGSILQSSKGKYGHVAYIETINEDGSI QVSEMNYTKPYEITKRTIHTYDIKNYYYIHPQKIKT >gi|224999891|gb|ACJC01000109.1| GENE 20 21064 - 21597 397 177 aa, chain + ## HITS:1 COG:SA1039 KEGG:ns NR:ns ## COG: SA1039 COG0597 # Protein_GI_number: 15926779 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Staphylococcus aureus N315 # 17 176 1 159 163 193 76.0 1e-49 MLSVALDDIKKNGGTSLKKKYYISISLLMTFIVLVFDQVSKWLITISMKVGDSYEIIPNF LNITSHRNNGAAWGILSGKMLFFYIITIIILIVLVIFYIKEAQFNLFMQVAISLLFAGAL GNFIDRVLHGEVVDFIDTNIFGYDFPIFNIADSSLTIGVIFVIITLIKDAIINKKEV >gi|224999891|gb|ACJC01000109.1| GENE 21 21600 - 22517 1320 305 aa, chain + ## HITS:1 COG:SA1040 KEGG:ns NR:ns ## COG: SA1040 COG0564 # Protein_GI_number: 15926780 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Staphylococcus aureus N315 # 1 305 1 305 305 522 84.0 1e-148 MGNYNFNIIEQSQVGQRIDKLVSDLNKDWSRSQLQDWIKEGLVKVNGKVIKSNYKVKLND KIVVTEKEVVEADIKPENLNLDIYYEDEDVAIVYKPKGMVVHPSPGHYSGTLVNGLMYQI KDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDVAHRHLVEQLMSKTVKRKYTALVHGNIP HDYGTIDAPIGRNKNDRQAMAVVDDGKEAVTHFNVLEHFKDYTLIECQLETGRTHQIRVH MKYIGYPLVGDPKYGPKKTLDIGGQALHAGIIGFEHPVTHKYIEKHATLPNDFEKLLDDI RRRDA >gi|224999891|gb|ACJC01000109.1| GENE 22 22819 - 23346 620 175 aa, chain + ## HITS:1 COG:SA1041 KEGG:ns NR:ns ## COG: SA1041 COG2065 # Protein_GI_number: 15926781 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 175 1 175 175 241 77.0 6e-64 MSERIILDDAAIQRTITRIAHEILEYNKGTKDLVLLGIKTRGAFLAHRIQDKINSIEQQL VPTGTIDITHFRDDVDKVVQQADQRAFDINVDINNKVVVIIDDVLYTGRTVRASLDAILL HTRPIKIGLAALVDRGHRELPIRADFVGKNIPTARDESVSVYLEEIDDRNAVVIE >gi|224999891|gb|ACJC01000109.1| GENE 23 23579 - 24886 1049 435 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 15 430 5 421 447 408 50 1e-113 MENEQMFERTVQPVLDVKDKPKPAQWAFLSLQHLFAMFGSTVLVPFLTHLPISAALLASG IGTLLYILITKAKIPAYLGSSFAFITPIITGLSTHSLGDMLVALFMSGLMYVIIGIFIKL SGTHWLMHLLPPVVVGPVIMVIGLSLAPTAVNMAMFENSAEMKGYNLSYLIVALITLAVT IIVQGFFKGFLSLIPVLIGIIVGYIVSIFMGIVKFAPIAQAKWIDFPHIYLPFKDYTPSF HLGLILVMIPVVFVTVSEHIGHQMVINKIVGRNFFENPGLDKSIIGDGVSTMFASMIGGP PSTTYGENIGVLAITKIYSIYVIGGAAVIAIILAFIGKFTALISSIPTPVMGGVSILLFG IIAASGLRMLVESQVDFSSNRNLVIASVVLVVGIGNLLINLKGIGINLQIEGMALSALSG IILNLILPKEKNQIN >gi|224999891|gb|ACJC01000109.1| GENE 24 24912 - 25793 863 293 aa, chain + ## HITS:1 COG:SA1043 KEGG:ns NR:ns ## COG: SA1043 COG0540 # Protein_GI_number: 15926783 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Staphylococcus aureus N315 # 1 293 1 293 293 469 78.0 1e-132 MEHLLSMEHLSNSEIYDLITIACQFKSGERPLPQFNGQYVSNLFFENSTRTKCSFEMAEQ KLGLKLINFETSTSSVKKGESLYDTCKTLESIGVDLLVIRHSQNSYYEELDQLNIPIANA GDGSGQHPTQSLLDIMTIYEEYGSFEGLNILICGDIKNSRVARSNYHSLTSLGANVMFSS PKEWVDNTLEAPYVEIDEVIDKVDIVMLLRVQHERHGISGEANFAAEEYHQQFGLTQARY DKLKEEAIVMHPAPVNRGVEIKSELVEAPKSRIFKQMENGMYLRMAVISALLQ >gi|224999891|gb|ACJC01000109.1| GENE 25 25811 - 27088 1494 425 aa, chain + ## HITS:1 COG:SA1044 KEGG:ns NR:ns ## COG: SA1044 COG0044 # Protein_GI_number: 15926784 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Staphylococcus aureus N315 # 1 425 1 424 424 687 78.0 0 MKLIKNGKILKNGILKDTEILIDGKRIKQISSKINASSSNIEVIDAKGNLIAPGFVDVHV HLREPGGEHKETIESGTKAAARGGFTTVCPMPNTRPVPDTVEHVRELRQRISETAQVRVL PYAAITKRQAGTELVDFEKLALEGVFAFTDDGVGVQTASMMYAAMKQAAKVKKPIVAHCE DNSLIYGGAMHKGKRSEELGIPGIPNIAESVQIARDVLLAEATGCHYHVCHVSTKESVRV IRDAKKAGIHVTAEVTPHHLLLTENDVPGDDSNYKMNPPLRSNEDREALLEGLLDGTIDC IATDHAPHAKEEKEQPMTKAPFGIVGSETAFPLLYTHFVRRGNWSLQQLVDYFTIKPATI FNLNYGKLHKDSYADLTIIDLNTEKEIKSEDFLSKADNTPFIGEKVYGNPTLTMLKGEVV FEEEK >gi|224999891|gb|ACJC01000109.1| GENE 26 27089 - 28189 1126 366 aa, chain + ## HITS:1 COG:SA1045 KEGG:ns NR:ns ## COG: SA1045 COG0505 # Protein_GI_number: 15926785 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Staphylococcus aureus N315 # 1 366 1 366 366 630 81.0 1e-180 MLEKRYLVLEDGSYYEGYRLGSDDLSIGEIVFNTAMTGYQETISDPSYTGQIITFTYPLI GNYGINRDDFESLTPKLNGVVVKEASTHPSNFRHQKTLHETLAQYHIPGISGVDTRSITR KIRNHGVLRAGFTDNKDNIQELVEQLKTAELPRDEVQTVSTKTPYVSTGSDLSVVLLDFG KKQNIVRELNLRGCNVTVVPYDTSAEEILSMSPDGVMLSNGPGDPDEVDVALDMIRGILG KIPFFGICLGHQLFALSQGATSFKMKFGHRGANHPVKDLRTGKIDITSQNHGYSIDRDSL KNTDLEVTHIALNDGTVEGLRHKELPAFSVQYHPEARPGPSDSNYLFDEFITMMKDFKEK ERQINA >gi|224999891|gb|ACJC01000109.1| GENE 27 28182 - 31355 3545 1057 aa, chain + ## HITS:1 COG:SA1046 KEGG:ns NR:ns ## COG: SA1046 COG0458 # Protein_GI_number: 15926786 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Staphylococcus aureus N315 # 1 1057 1 1057 1057 1949 91.0 0 MPKRDDIQTILVVGSGPIIIGQAAEFDYAGTQACLALKEEGYRVILVNSNPATIMTDKEI ADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTGLNMAIQLHDSGVLEANNVKLLGTEL ESIQQAEDREMFRTLMNDLNVPVPESDIVNTVEQAFEFKEQVGYPLIVRPAFTMGGTGGG ICHNDAELKEVVSNGLHYSPATQCLIEKSIAGYKEIEYEVMRDKNDNAIVVCNMENIDPV GIHTGDSIVVAPSQTLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSLNYYIIEVN PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMLNPITGTSYAAFEPTLDYVISKIPRF PFDKFEKGERELGTQMKATGEVMAIGRTYEESLLKAIRSLEYGVHHLGLPNGESYELDYI KERIGHQDDERLFFIGEAIRRGTSLEELHNMTKIDYFFLNKFQNIIDIEHELKNHQGDLE YLKYAKDYGFSDKVIAHRWDMEEKDIYELRMSQNIKPVYKMVDTCAAEFESTTPYYYGTY EDENESIVTDKEKILVLGSGPIRIGQGVEFDYATVHAVWAIQNAGYEAIIVNNNPETVST DFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTAINLADKLAQHGVKILGTSLED LNRAEDRKEFEALLREISVPQPQGKTATSPKEALKNAREIGYPVVVRPSYVLGGRAMEIV DNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVVIPGIMEHIERAGVHS GDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGLINIQFVIAHDGVYVLEVNPRSSRT VPFLSKITDIQMAQLAMRAIMGETLAEMGYKQGIQPYSEGVYVKAPVFSFNKLKNVDITL GPEMKSTGEVMGKDLTLEKALYKGLTGSGFEVKDHGTVLMTVSDKDKDEIVKIAHRLNEI GYKILATRGTAQKLKDHNIPVEVVGKIGGEDDLLTRIQNGEVQIVINTMTKGKEIERDGF QIRRTTVENGVPCLTSLDTASALTNVIESMTFTMRNV >gi|224999891|gb|ACJC01000109.1| GENE 28 31384 - 32082 733 232 aa, chain + ## HITS:1 COG:SA1047 KEGG:ns NR:ns ## COG: SA1047 COG0284 # Protein_GI_number: 15926787 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Staphylococcus aureus N315 # 3 231 1 229 230 350 75.0 1e-96 MSVRNLPIIALDFKSADEVHTFLNKFNEPLCVKIGMELFYQTGPALIKSIKKRGHDIFLD LKLHDIPNTVSKAMEGLARLDIDLVNVHAAGGIKMMEEAKKGLRKHNADIKIIAVTQLTS TTERQLHEEQNIQTSIEEAVLNYARLTKKAGLDGVVCSPLEAKMISKELGSDFLKVTPGI RPKGAARNDQQRITTPEEAKTLGSTHIVVGRPITQSEHPIDSYHKIKESWLS >gi|224999891|gb|ACJC01000109.1| GENE 29 32083 - 32694 636 203 aa, chain + ## HITS:1 COG:SA1048 KEGG:ns NR:ns ## COG: SA1048 COG0461 # Protein_GI_number: 15926788 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 203 1 203 203 330 81.0 1e-90 MAKNIAKALLDIEAVSLSPNDLFTWSSGIKSPIYCDNRITLGYPEVRNAIRDGLIQLIKE HFSNVEIISGTATAGIPHAAYISEKMELPMNYVRSKSKSHGKQNQIEGAKSENKNVVVVE DLISTGGSSITAVEALEEAGANVLGVVAIFTYGLAKADETFNKAHIPFYTLSDYNELIEV AKDDGKISLNDIQTLVDWRDNLS >gi|224999891|gb|ACJC01000109.1| GENE 30 32720 - 32926 221 68 aa, chain + ## HITS:1 COG:no KEGG:SERP0772 NR:ns ## KEGG: SERP0772 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 68 1 68 68 94 100.0 8e-19 MEQNNDNNHLYTLIKHCNEFLYRRDDYRIPSYSQSDHSSKENISKTMNDEVFKHSIEIFK RAKKNLNH >gi|224999891|gb|ACJC01000109.1| GENE 31 33467 - 33874 585 135 aa, chain + ## HITS:1 COG:SA1050 KEGG:ns NR:ns ## COG: SA1050 COG3865 # Protein_GI_number: 15926790 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 133 1 133 133 230 87.0 7e-61 MDIPKITTFLMFNDEAEEAIQLYTSLFEDSEIITMVKYGEEGPGTPGSVQHSIFTLNGQV FMAIDANSGEELPMNPAMSLYVTVKDTMEMERLFNGLKSEGAILMPKTEMPPFREFAWVQ DKFGVSFQLALPENK >gi|224999891|gb|ACJC01000109.1| GENE 32 33937 - 35634 1698 565 aa, chain - ## HITS:1 COG:SA1051 KEGG:ns NR:ns ## COG: SA1051 COG1293 # Protein_GI_number: 15926791 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Staphylococcus aureus N315 # 1 564 1 564 565 884 82.0 0 MAYDGLFTKKMIESLQGLVSGRIHKINQPENDTIIIVVRQNRKNHQLLLSIHPSFSRLQL TTKKYDNPFTPPMFARVFRKHLEGGFIKAIRQVGNDRRIEIDIESKDEIGDTIYRTIILE IMGKHSNLILVDDQRKIIEGFKHLTPNTNQYRTVMPGFKYETPPNQNKINPYELTGQEVL KYIDFNAGKIAKQLLNICEGFSPLIANEIVNRRQFMTQETLPDAFDEVMAETKSASIPVF HKNHETGKEDFYFMKLNQFYDDIVEYHSLHELLDRFYDARGERERVKQRANDLVRFVQQQ LQKQQNKLSKLIDEYESAKNKETQQLYGELITANIYRIQQGDDSVIALNYYTGEEVKIPL NPTKSPSTNAQYYYKQYNRMKTREHELTHQIKLTKENIDYFDNIEQQLKHITVDDIDDIR DELAEQGFMKQRKQSKKKKQSKIQLQTYHSTDGDTILVGKNNKQNDYLTNKKAHKNHLWF HTKDIPGSHVVILNESPSETTIKEAAMLAGYFSKAGSSAQIPVDYTEIRHVHKPSGAKPG FVTYDNQKTLFATPDYDHIQQMKES >gi|224999891|gb|ACJC01000109.1| GENE 33 35904 - 36527 667 207 aa, chain + ## HITS:1 COG:SA1052 KEGG:ns NR:ns ## COG: SA1052 COG0194 # Protein_GI_number: 15926792 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Staphylococcus aureus N315 # 1 207 1 207 207 353 91.0 1e-97 MDKEKGLLIVLSGPSGVGKGTVRKKIFEDPTTSYKYSISMTTRHMREGEIDGVDYFFKTK EEFEALIKDDQFIEYAQYVGNYYGTPVQYVKDTMEEGHDVFLEIEVEGAKQVRKKFPDAL FIFLAPPSLDDLRERLVGRGTESDEKIQSRVNEARKEVEMMNLYDYVVVNDEVELAKNRI QSIVEAEHLKRERIEAKYRKMLLEVKK >gi|224999891|gb|ACJC01000109.1| GENE 34 36527 - 36739 311 70 aa, chain + ## HITS:1 COG:SA1053 KEGG:ns NR:ns ## COG: SA1053 COG1758 # Protein_GI_number: 15926793 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Staphylococcus aureus N315 # 1 70 1 70 72 94 72.0 5e-20 MLNPPLNQLTAKVNSKYLIATTAAKRARELDERRETALLDQYQSAKPVGKALEEIADGKI EPVVPKEYLG >gi|224999891|gb|ACJC01000109.1| GENE 35 37278 - 38477 1365 399 aa, chain + ## HITS:1 COG:SA1054 KEGG:ns NR:ns ## COG: SA1054 COG0452 # Protein_GI_number: 15926794 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Staphylococcus aureus N315 # 1 399 1 399 399 619 77.0 1e-177 MKHILLAVTGGIAAYKAIDLTSKLIQSGYDVRVMLSDHAQEFVTPLAFQAISRNPVYTNT FKEENPEEIQHVSLGDWADAIIVAPATANTIAKLSVGIADDLITSTLLATTTPKFVAPAM NVNMYNNPRTKHNMKVLSQDGYYFIEPGSGYLACGYVAKGRMEEPMQILSVINKFFTQQE NVVKSSFSGKHALVTAGPTVEVIDPVRYVSNRSSGKMGYAIAEALRDKGAIVTLISGPTH LSLPEGINVVKVESAEDMFQAVTERFAKQDIVIKAAAVSDYTPMDILEHKLKKQEGGLSV QFKRTKDILKYLGENKTHQYLVGFAAETQNIEQYALDKLKRKNADVIISNNVGDTSIGFS SDDNELTMHFKNNEKVNIKKGKKSALAHQIIEILETRWQ >gi|224999891|gb|ACJC01000109.1| GENE 36 38477 - 40885 1980 802 aa, chain + ## HITS:1 COG:SA1055 KEGG:ns NR:ns ## COG: SA1055 COG1198 # Protein_GI_number: 15926795 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Staphylococcus aureus N315 # 1 802 1 802 802 1268 77.0 0 MIAKVIVDIPSKSVDFKFDYIVPKNLERVIQIGVRVVVPFGPRTIQGYVMNIQQEPDGNM DISKLKEIKEVRDIKPELTSELIQLSEWMSHYHVMKRISVLEAMLPSAIKAKYKKAFSII DTKNISSKTRALFNNDGYYLYKEAQQNNDLEEMLTLLNQGLIEEITILSQNTKKKTQKAV GVVNTLNGDEVLAKLEKYTKQYDLYAFLLEESHRTVFLKEINDMGFSHSSLDSLIKKGYI EKYTAEVFRDPYANRIFEQEQKRILTKEQQDAFEAIKHYIHDEKERTFLLHGVTGSGKTE VYLQTIEEVLNKGKEAMMLVPEIALTPQMVLRFKRRFGDDVAVLHSGLSKGERYDEWQKI RDGRARVSVGARSSIFAPFKNLGIIIIDEEHESTYKQEDYPRYHARDIAQWRSQFHHCPV VLGSATPSLESYARAEKNVYELLSLPHRVNQQALPHIDIIDMREELSEGNRSMFSIALRQ AIQERLDKKEQIVLFLNRRGYASFMLCRDCGYVPQCPHCDISLTYHKTTDQLKCHYCGYQ ENPPSRCPNCESDHIRQVGTGTQRVEELLQQEFPQARIIRMDVDTTSRKGAHEKLLNDFE AGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVSGRAGRHE KEGQVIIQTYNPDHYSIKDVKLNDYLSFYQKEMNYRKLGKYPPYYFLINFTISHTDIKKV MVASKHIHQILVQHLSEKAFVLGPSPAALARINNEYRFQILVKYKSEPQLHQALQYLDDY YHDQYVKDKLSLKIDINPQMMM >gi|224999891|gb|ACJC01000109.1| GENE 37 40991 - 41194 342 67 aa, chain - ## HITS:1 COG:SA1057 KEGG:ns NR:ns ## COG: SA1057 COG2314 # Protein_GI_number: 15926797 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 67 1 67 67 103 77.0 1e-22 MEVNKVIYILLAVFLGSFGIHKFYAGKPIQGLLHILFCWTAIPHVLAIISAVLTLFKPAD ANGNVRM >gi|224999891|gb|ACJC01000109.1| GENE 38 41416 - 41904 617 162 aa, chain + ## HITS:1 COG:SA1058 KEGG:ns NR:ns ## COG: SA1058 COG0242 # Protein_GI_number: 15926798 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Staphylococcus aureus N315 # 1 162 1 162 162 197 64.0 7e-51 MTVKKLVKSTHPILNKMIQPVSTYDQKLKVLLEDLEDTLYHEEAAAISAPQIGVDQSVAL IDMEQEGLLQLINPVVKSQSQETVSDLEGSISLPHIYGEVKRSKMITVQSYDINGNAVEL TAYDDIARMILHMIDHLNGIQFTKRAHHILNETEVEAYFDNE >gi|224999891|gb|ACJC01000109.1| GENE 39 41897 - 42829 1007 310 aa, chain + ## HITS:1 COG:SA1059 KEGG:ns NR:ns ## COG: SA1059 COG0223 # Protein_GI_number: 15926799 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Staphylococcus aureus N315 # 1 310 1 311 311 450 74.0 1e-126 MSKIIFMGTPDFSTKVLEMLIAEHEVIAVVTQPDRPVGRKKVMTPPPVKRVATKHQIPVY QPEKLKDSQELDVLLSLESDLIVTAAFGQLLPESLLNAPKLGAINVHASLLPKYRGGAPI HQAIIDGEEETGITIMYMVKKLDAGNIISQQSIRIEEEDNVGTMHDKLSFLGAELLKKTL PSIIDNTNDSIPQDDALATFASNIRREDERIDWNMSAQAIHNHIRGLSPWPVAYTTMNEK NLKLFSAFIVKGKKGNPGTIIEATKHELIIATGSDDAIALTEIQPAGKKRMKVTDYLSGV QESLVGKVLL >gi|224999891|gb|ACJC01000109.1| GENE 40 42829 - 44133 1029 434 aa, chain + ## HITS:1 COG:SA1060 KEGG:ns NR:ns ## COG: SA1060 COG0144 # Protein_GI_number: 15926800 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Staphylococcus aureus N315 # 1 434 28 461 461 674 72.0 0 MKSVRTYALETINDVLNKGAYSNLKINEVLSTNNINTVDKNLFTELVYGTLKRKYTLDYL LKPFIKTKIKSWVRQLLWMSLYQYLYLDKIPNHAIIHEAVDIAKKRGGYHTGNIVNGILR TVMRTELPSFEDIDDTKKRIAIQYSLPKWIVDHWVTHFGIEKTENIAQSFLEPVATTVRA NISRGSIDSIISKLEQEGYHVKKDDMLPFCLHISGLPVVNSNAFKEGYISIQDKSSMMVA YVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDATDIHEHKINLIKQNIKKLKLNNI KAFQHDATEVYDKMYDKILVDAPCSGLGVLRHKPEIKYSQSQNSIKSLVELQLQILENVK DNIKPGGTIVYSTCTIEQMENENVIYTFLKRHKDFEFEPIQNPVTGEQVKTLQILPQDFN SDGFFISKIKRKES >gi|224999891|gb|ACJC01000109.1| GENE 41 44136 - 45230 955 364 aa, chain + ## HITS:1 COG:SA1061 KEGG:ns NR:ns ## COG: SA1061 COG0820 # Protein_GI_number: 15926801 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Staphylococcus aureus N315 # 1 364 1 364 364 664 92.0 0 MITAEKKKKNKFLPNFEKQSIYSLRYDEMQQWLIDHGQQKFRAKQIFEWLYQKRVNTIDE MTNLSKELRQILKDHFAMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHEYGNSVC VTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDETNERVSQIVIMGIGEPF ENYDEMMDFLRIVNDDNSLNIGARHITVSTSGIIPRIYDFAEEDIQINFAVSLHGAKDEI RSRLMPINRAYNVDKLMEAIRYYQEKTNRRVTFEYGLFGGVNDQLEHARDLAHLIKDLNC HVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACGQLRAKERQ VETR >gi|224999891|gb|ACJC01000109.1| GENE 42 45237 - 45980 658 247 aa, chain + ## HITS:1 COG:SA1062 KEGG:ns NR:ns ## COG: SA1062 COG0631 # Protein_GI_number: 15926802 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Staphylococcus aureus N315 # 1 247 1 247 247 377 76.0 1e-104 MLNAQFFTDTGQHREKNEDAGGIFYNQTQQQMLVLCDGMGGHQAGEIASQFVTYELQKRF EEENLIEINRAESWLRSNIKEINFQLYNYAQENEEYRGMGTTLVCAIIYDKQVVVANVGD SRAYVINQRQMDQITSDHSFVNHLVMTGQITKDEAFHHPQRNIITKVMGTDKRVSPDLFI KRTHFYDYLLLNSDGLTDYVRDYEIQELLSSNSSLDVHGNELLDLALAHDSKDNVSFILL KLEGDKV >gi|224999891|gb|ACJC01000109.1| GENE 43 45977 - 47977 1868 666 aa, chain + ## HITS:1 COG:SA1063_1 KEGG:ns NR:ns ## COG: SA1063_1 COG0515 # Protein_GI_number: 15926803 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Staphylococcus aureus N315 # 1 442 1 444 444 618 74.0 1e-176 MIGKVINERYTITDKLGGGGMSIVYLAEDSILYRKVAIKAISIPPSEKEETFKRFEREVH NSSQLSHENIVSMIDVDEEDDCFYIVMEYIEGPTLAEYIHSHGPLSVETAIQFTEQILSG IKHAHDMRIVHRDIKPQNILIDKNKKLQIFDFGIAKALSETSLTQTNHVLGTVQYLSPEQ AKGEATDESTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSIPNITTDKRDDVPQS LSNVVLRATEKDKYHRYHTVQEMCDDLTSALHENRLNEEKYELDKTKTVPLTKDDLNHKI YDEQNQNDLNKTMQIPIVNDSIKQQEFQSSEPRYYQKSDKKRSKMKIAILSIIFVILLIG LFSFVAMAVFGNKYEEMPDLKGKTEKQAEKVLDSHHLKVGDISRNYSDKYPENQIIKTNP DSGERVEQGDRVDIVLSKGPEKVKMPNVLGMSKNDALKKLKAIGFKDIHVEQAYSQTYEK GLISEQSVVANSEVSVNNHHITIYESLGVRQVYVNNYENKSYESAKKELEDKGFKVQVTK ENNDDVEKGNVISQSPKDKTVDEGSTILLVVSKGEKSDEDDEEDKDTTTKNETVKVPYTG KKNKSQKVEVFIRDIDNKGDSAVQTFNIKSDKTINIPLKIKKGSDAGYTIRVDNKIVADK DVSYDG >gi|224999891|gb|ACJC01000109.1| GENE 44 48270 - 49160 653 296 aa, chain + ## HITS:1 COG:SA1064 KEGG:ns NR:ns ## COG: SA1064 COG1162 # Protein_GI_number: 15926804 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 6 296 1 291 291 431 72.0 1e-120 MRGVFLKTGRIVKLISGVYQVDVEGERFDTKPRGLFRKKKFSPVVGDIVDFEVQNTKEGY IHHVHDRNNELKRPPVSNIDELVIVMSAVEPEFSTQLLDRYLVIAHSYHLKPRILITKHD LASEQEILKIKDTIKLYQKIGYATQFIGKDSNYTATVDEWSDGLIVLSGQSGVGKSTFLN SYQPQLKLETNDISKSLNRGKHTTRHVELYDRKGGYIADTPGFSALDFNHIEKEQLKDFF IDIHEAGEQCKFRNCNHIKEPQCHVKTLVEKGEIPQFRYDHYQQLYNEISNRKVRY >gi|224999891|gb|ACJC01000109.1| GENE 45 49161 - 49805 726 214 aa, chain + ## HITS:1 COG:SA1065 KEGG:ns NR:ns ## COG: SA1065 COG0036 # Protein_GI_number: 15926805 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Staphylococcus aureus N315 # 1 213 1 213 214 311 73.0 5e-85 MVKILPSLLSIDFLNLKEELQLLEAAKVDGLHFDVMDGKFVPNISIGIPILDAVRQQSHL PIDVHLMIEQPENYINLFAEHGADMISVHVEATTHIHRAIEQIKQLGKKAGVVINPGTSV ETILPILSIVDYVLVMTVNPGFGGQTFIEQCVTKIEQLNQLKHENHLTFDIEVDGGINDQ TSKRCVEQGATMLVTGSYFFKQEDYAKVTSLLKE >gi|224999891|gb|ACJC01000109.1| GENE 46 49810 - 50445 559 211 aa, chain + ## HITS:1 COG:SA1066 KEGG:ns NR:ns ## COG: SA1066 COG1564 # Protein_GI_number: 15926806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Staphylococcus aureus N315 # 1 211 1 211 213 243 57.0 3e-64 MKINLLCSQRLLPNHIFEKEKDSNWAGIDRGALILVKQGIQPIFSVGDFDSVNDEERLML MQNLHIEPVEAEKDDTDLALGVAQAVERGYTEITIYGATGGRLDHFMGVLQILQKPQYLH QSIKIKVIDQQNHIQLLGEGKYVINRDSNYPYISFIPLNDKAILTLQGFKYNLNQEHLNL GSTLTISNEVMDNEAIIRVEQGSILKIRSRD >gi|224999891|gb|ACJC01000109.1| GENE 47 50529 - 50717 324 62 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27467817|ref|NP_764454.1| 50S ribosomal protein L28 [Staphylococcus epidermidis ATCC 12228] # 1 62 1 62 62 129 100 4e-29 MGKQCFVTGRKASTGNHRSHALNANKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVT RV >gi|224999891|gb|ACJC01000109.1| GENE 48 51075 - 51449 492 124 aa, chain + ## HITS:1 COG:SA1068 KEGG:ns NR:ns ## COG: SA1068 COG1302 # Protein_GI_number: 15926808 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 123 1 123 124 173 86.0 7e-44 MTLEISNDYGKIDISNDVIASVVGGKAVESYGIVGMASRQQVRDGIAEILGHDNYAKGIK VREDNGIIDVDMYIIVSYGVKISEVASNLQSTVKYTLEKTLNVKVNSINIFVQGVRVHET VKKV >gi|224999891|gb|ACJC01000109.1| GENE 49 51464 - 53122 1810 552 aa, chain + ## HITS:1 COG:SA1069 KEGG:ns NR:ns ## COG: SA1069 COG1461 # Protein_GI_number: 15926809 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Staphylococcus aureus N315 # 1 552 1 548 548 841 80.0 0 MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTITSGREEVENNL SQNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIEGEKEISVQQFAESFQAGVETA YKAVMKPVEGTILTVAKDAAKAAMDYVDQAEDCVDLMVHVIEAASESLDNTPNLLAVLKE VGVVDSGGKGLLCVYEGFLKGLKGEKVEAQAPKLDTESFVNDDHDFHGVINTEDIVYGYC TEMMVRFGKNKKAFDEQEFRNDMSEFGDSLLVINDDEIVKVHVHTEHPGDVFNYGQKYGE LIKLKVENMREQHREVIRKEQDGIQNKATNESKTVETAIVTISVGDGIAELFKSMGATHI ISGGQTMNPSTEDIVKVIEQSQCKRAIILPNNKNIMMASEQAASIVEAETVVIPTKSIPQ GISALFQYDQESNLEDNKSHMNDALETVQSGSITFAVRDTKIDGIEIKKDEFMGLAEDKI VISDFNQFHAVKGLLSKLLNEDSEILTMISGEDADNSITNQIIDWIESEYPDVEVEQHEG GQPIYQYFFAVE >gi|224999891|gb|ACJC01000109.1| GENE 50 53326 - 55374 2343 682 aa, chain + ## HITS:1 COG:SA1070 KEGG:ns NR:ns ## COG: SA1070 COG1200 # Protein_GI_number: 15926810 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Staphylococcus aureus N315 # 1 682 1 686 686 1170 84.0 0 MSKVHLIESPYALDKIKGIGPKRLALLEELNIKSVEDLVLYLPTRYEDNTVIDLNQADDQ ATVTVQGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKG KWNRNKQEINGNRIFFNDQKNQEDAHLEPVYRVKEGIKQKQLRDNIRQALSDVTIHEWLT DDLREKYKLETLAYTIQTLHHPIDKQNLLRARRTYAFTELFMFELRMQWLNRLEKTSDEA IEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAI CMYALKTAGYQSALMVPTEILAEQHAESLMQLFGNTMNVALLTGSVKGKKRRLLLEQLEN GTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPIPR TLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIE SSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTTVV EVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPKTETGIERMTIMT QTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQSGQF FEQQYSHLREFIKQNLRHIRFD >gi|224999891|gb|ACJC01000109.1| GENE 51 55484 - 56095 541 203 aa, chain + ## HITS:1 COG:SA1071 KEGG:ns NR:ns ## COG: SA1071 COG2050 # Protein_GI_number: 15926811 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Staphylococcus aureus N315 # 18 198 1 181 185 241 71.0 9e-64 MIFKEYLRLGTKMRGERVKLKKNDRRVAIKEAIELNPFITDYELCEKFDVSIQTIRLDRT HLNIPELRKRIKLVAEQNYGRIKSIEANEIIGDLIQVNPDVSAQSLIEITIDSVFAKSEI ARGHVLFAQANSLCVALIHKPIVLTHESQVEFKEKVKLNDTVRADARVIDITDKHYIIEV NSYVSDMLVFKGKFKMYYTSEDE >gi|224999891|gb|ACJC01000109.1| GENE 52 56097 - 57074 1299 325 aa, chain + ## HITS:1 COG:SA1072 KEGG:ns NR:ns ## COG: SA1072 COG0416 # Protein_GI_number: 15926812 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 325 1 325 328 532 87.0 1e-151 MVKIAVDMMGGDDAPGIVLDAVKKAVEDFKDLEIILFGDESQYNLSHERIEFRHCTEKIE MEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPAL VVTLPTTDGKGFVFLDVGANADAKAEHLLQYAQLGNIYAQKIRGIQNPSVSLLNIGTEAA KGNSLTKKAYDLFEKNQSFNFTGNIEAKTLMDGNVDVVVTDGYTGNMVLKNLEGTAKSIG KMLKETIMSSFKNKLAGAVLKKDLDTFAKKMDYSEYGGSVLLGLDGTVVKAHGSSNAKAF YSAIRQAKIAGEENIVQIMKDTVGE >gi|224999891|gb|ACJC01000109.1| GENE 53 57076 - 58005 1136 309 aa, chain + ## HITS:1 COG:SA1073 KEGG:ns NR:ns ## COG: SA1073 COG0331 # Protein_GI_number: 15926813 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Staphylococcus aureus N315 # 1 307 1 307 308 494 78.0 1e-140 MGKIAVVFPGQGAQKVGMASDLYNEEERSTRVLNLAQETVDFDLLETMFNDNDGKLGETE NTQPALLTHSIALLESLNHLKVDYTMGHSLGEYSSLVASGVLAFEDAVRIVRKRGQLMAQ AFPNGVGGMAAVLGLDYDDVDKICQTLSTNEQLIEPANINSPGQIVVSGHKPLIDELVEK GKELGAKRVLPLAVSGPFHSSMMKVIEEDFANFINQFEWHNANYPIVQNVNAKGETDAEV IKRNMVKQLYLPVQFIQSTEWLINQGVDHFIEIGPGKVLSGLIKKINRDVKITSIQTLED VKGWNNNHE >gi|224999891|gb|ACJC01000109.1| GENE 54 57998 - 58390 82 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 112 4 103 242 36 27 6e-19 MNKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQAN VAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQ KVNATNVTST >gi|224999891|gb|ACJC01000109.1| GENE 55 58374 - 58733 195 119 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 2 119 128 242 242 79 33 6e-19 MLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFI VSDMTNALSDDLKDQMLEQIPLKRFGEDTDIANTVAFLASDKAKYITGQTIHVNGGMYM Prediction of potential genes in microbial genomes Time: Sun May 29 07:41:47 2011 Seq name: gi|224999890|gb|ACJC01000110.1| Staphylococcus epidermidis W23144 contig00150, whole genome shotgun sequence Length of sequence - 10214 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 2, operones - 2 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 3 - 62 2.9 1 1 Op 1 7/0.000 + CDS 88 - 321 290 ## COG0236 Acyl carrier protein + Term 333 - 373 3.2 + Prom 362 - 421 5.8 2 1 Op 2 6/0.000 + CDS 460 - 1173 665 ## COG0571 dsRNA-specific ribonuclease + Prom 1175 - 1234 7.4 3 1 Op 3 10/0.000 + CDS 1300 - 4869 3702 ## COG1196 Chromosome segregation ATPases 4 1 Op 4 7/0.000 + CDS 4866 - 6092 1027 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 5 1 Op 5 8/0.000 + CDS 6094 - 6426 387 ## COG2739 Uncharacterized protein conserved in bacteria 6 1 Op 6 23/0.000 + CDS 6457 - 7824 1832 ## COG0541 Signal recognition particle GTPase + Term 7830 - 7886 12.5 + Prom 8028 - 8087 8.3 7 2 Op 1 12/0.000 + CDS 8131 - 8406 470 ## PROTEIN SUPPORTED gi|27467831|ref|NP_764468.1| 30S ribosomal protein S16 + Term 8425 - 8455 4.3 + Prom 8434 - 8493 9.2 8 2 Op 2 30/0.000 + CDS 8533 - 9036 578 ## COG0806 RimM protein, required for 16S rRNA processing 9 2 Op 3 33/0.000 + CDS 9036 - 9773 706 ## COG0336 tRNA-(guanine-N1)-methyltransferase + Prom 9784 - 9843 6.8 10 2 Op 4 . + CDS 9878 - 10213 555 ## PROTEIN SUPPORTED gi|242242524|ref|ZP_04796969.1| 50S ribosomal protein L19 Predicted protein(s) >gi|224999890|gb|ACJC01000110.1| GENE 1 88 - 321 290 77 aa, chain + ## HITS:1 COG:SA1075 KEGG:ns NR:ns ## COG: SA1075 COG0236 # Protein_GI_number: 15926815 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 99 98.0 1e-21 MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAE KINTVGDAVKYINSLEK >gi|224999890|gb|ACJC01000110.1| GENE 2 460 - 1173 665 237 aa, chain + ## HITS:1 COG:SA1076 KEGG:ns NR:ns ## COG: SA1076 COG0571 # Protein_GI_number: 15926816 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Staphylococcus aureus N315 # 1 235 9 243 243 390 83.0 1e-108 MVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLEL TVSRYLFDRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPS LISDAFEAFVGALYLDQGLDTVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGD VTYQLIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMKNKKSL >gi|224999890|gb|ACJC01000110.1| GENE 3 1300 - 4869 3702 1189 aa, chain + ## HITS:1 COG:SA1077 KEGG:ns NR:ns ## COG: SA1077 COG1196 # Protein_GI_number: 15926817 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Staphylococcus aureus N315 # 1 1188 1 1188 1188 1478 76.0 0 MVYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGA KMEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGESEYYLNNDRA RLKDIIDLFLDSGLGKEAFSIISQGRVDEILNAKPINRRQIIEESAGVLKYKKRKAESIQ KLDHTEDNLNRVEDILYDLEGRVEPLKEEAAIAKEYKQLSKEMEQSDVIVTVSDIDHYTE DNQRLDERLNHLKSQQAEKEGQQAQINQLLQRYKGKRQQNDYDIEKLNYELVKATENYEQ LSGKLNVLEERKKNQSETNARYEEELDNLESQIDSIKNEKAQNEKLLADLKNKQKQLNKE VQELESLLYVSDEQHDEKLEEIKNSYYTLMSEQSDVNNDIRFLEHTINENEAKKSRLDSR LVEAFNQLKDIQQNITQTNKAYQSSKKSMQKVEQNIQQLERQLTDSKRLLSEYENKLYQA YRYNEKLKSRIDSLATQEEDYTYFFNGVKHILKAKDKELRGIHGAVAEVINVPSEMTQAI ETALGASLQHVIVDNEKDGRQAIQYLKQRGLGRATFLPLNVIQPRHVAAEIKDVARSSQG FINIASDAINVSAKYQNIIENLLGNTIIVENLKHANELARAIRYRTRIVTLEGDVVNPGG SMTGGGARKTKSILSQKDELSTMRNQLEDYQRQTAEFERQFKEQKTQAEQLSEQYFSASQ QYNNLKEQVHHHELELDRLKTQEAHLKNEHEEFEFEKNDGYQSDKSKETLKEKQNHLTEI QQQLKQLENDIERYTQLSKEGKASTHQTQQQLHQKQSDLAVVKERIKSQKQVHEHLDKQL SDSERQKLEVNEKIKLFNSDEMMGEDAFEKLKEQIQQQENVRQNLNQQLSEIKQQRKDFN EKIEMNEGQLQKCHQDILSIENHYQDIKAKQSKLDVLINHAIDHLNDTYQLTVERARMEY DSDETIDNLRKKVKLTKMSIDELGPVNLNAIEQFEELNERYTFLNEQRTDLREAKETLEQ IIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGGGQAELRLTEDDYLSAGVDIIVQPPGK KLQHLSLLSGGERALSAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAQYLNELSTE TQFIVITHRKGTMEFSDRLYGVTMQESGVSKLVSVNLNTIDEVMKEEQA >gi|224999890|gb|ACJC01000110.1| GENE 4 4866 - 6092 1027 408 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 76 390 14 328 336 400 62 1e-111 MSFFKRLKDKFSSKNEDDIQKDLDESVDSNVNSDSDSMDPNDSDEQVKPKKKPKKLSEAD FDEDGLISIEDFEEIEAQKIGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEM LITADVGFNTVMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDHSEAMNIEDG RLNVILMVGVNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEV VSQNEGSDPAAVVYDAINAAKNKDVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDA PHEALLCLDATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYV GLGEKMDDLQPFSPESYVYGLFADMIEQNEDIPEEISRNSSVESEEGN >gi|224999890|gb|ACJC01000110.1| GENE 5 6094 - 6426 387 110 aa, chain + ## HITS:1 COG:SA1079 KEGG:ns NR:ns ## COG: SA1079 COG2739 # Protein_GI_number: 15926819 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 110 1 110 110 137 82.0 5e-33 MGQNDLVKTLRMNYLFDFYQSLLTNKQKNYLELFYLQDYSLSEIADTFEVSRQAVYDNIR RTGDLVEDYESKLRLYQRFEKRRELYNLMKQSLNQPELLKQYITQLEELE >gi|224999890|gb|ACJC01000110.1| GENE 6 6457 - 7824 1832 455 aa, chain + ## HITS:1 COG:SA1080 KEGG:ns NR:ns ## COG: SA1080 COG0541 # Protein_GI_number: 15926820 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Staphylococcus aureus N315 # 1 455 1 455 455 733 94.0 0 MAFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERA LGSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKMANKPPTVVMMVGLQGAGKTTTAGK LALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVSPQQIVENALKHA KEEHLDFVIIDTAGRLHIDETLMNELQEVKEISKPDEIMLVVDAMTGQDAVNVAQSFDEQ LDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGD VLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKM KGLDKLNMSDKQIDHIKAIIQSMTPKERSNPETLNVSRKKRIAKGSGRSLQEVNRLMKQF NDMKKMMKQFTGGGKGKKAKRNQMQNMLKGMNLPF >gi|224999890|gb|ACJC01000110.1| GENE 7 8131 - 8406 470 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467831|ref|NP_764468.1| 30S ribosomal protein S16 [Staphylococcus epidermidis ATCC 12228] # 1 91 1 91 91 185 100 1e-46 MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQLGTYNPAHVNAPEVKIDEELALKW LHDGAKPTDTVHNILSREGILKKFDEQKNAK >gi|224999890|gb|ACJC01000110.1| GENE 8 8533 - 9036 578 167 aa, chain + ## HITS:1 COG:SA1082 KEGG:ns NR:ns ## COG: SA1082 COG0806 # Protein_GI_number: 15926822 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Staphylococcus aureus N315 # 1 167 1 167 167 251 78.0 5e-67 MEVEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVDSYRIHKGFH MLRFEGINNINDIEHLKGDYIYQERDHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVIN IFETGANDVWIVKGEKEYLIPYIEDVVKDIDIENKTIKITPMEGLLD >gi|224999890|gb|ACJC01000110.1| GENE 9 9036 - 9773 706 245 aa, chain + ## HITS:1 COG:SA1083 KEGG:ns NR:ns ## COG: SA1083 COG0336 # Protein_GI_number: 15926823 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Staphylococcus aureus N315 # 1 243 1 243 245 418 81.0 1e-117 MKIDYLTLFPEMFEGVLNHSILKRAQDKGIINVNTINFRDYSINKHNQVDDYPFGGGQGM VLKPEPVFNAMEDINRNEHTRVILMCPQGRPFTQEIAQELSEAKHIVFICGHYEGYDERI RKHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNQASHQDDSFSDGLLEFPQYT RPREYKNMSVPEVLLSGNHAHIDQWRHEQKLIRTYEKRPDLLEQYPLTEKDREILETYKK KLKND >gi|224999890|gb|ACJC01000110.1| GENE 10 9878 - 10213 555 112 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242242524|ref|ZP_04796969.1| 50S ribosomal protein L19 [Staphylococcus epidermidis W23144] # 1 112 1 112 112 218 100 1e-56 MSNHKLIEAVTKSQLRTDLPTFRSGDTLRVHVRIVEGSRERIQVFEGVVIKRRGGGISET FTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARI Prediction of potential genes in microbial genomes Time: Sun May 29 07:41:48 2011 Seq name: gi|224999889|gb|ACJC01000111.1| Staphylococcus epidermidis W23144 contig00151, whole genome shotgun sequence Length of sequence - 2209 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 87 - 135 9.1 1 1 Tu 1 . - CDS 186 - 2207 1262 ## COG4485 Predicted membrane protein Predicted protein(s) >gi|224999889|gb|ACJC01000111.1| GENE 1 186 - 2207 1262 673 aa, chain - ## HITS:1 COG:SA1085 KEGG:ns NR:ns ## COG: SA1085 COG4485 # Protein_GI_number: 15926825 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 673 195 868 868 711 55.0 0 RKIGWFIFAIAYTLFSNFYFSYYEAIVIGFYFIYRVAIPHETDIVNRWQKFYILVCATLL SVLVSIYGLYTGVSSFLDNDRAQNPNFKITFFTNLFETNYNIFADGFYITISFIAIIALF CFKLYQHYYYKLFAIATWILLIGSFFQWFDSAFNGFSLPQRRWVYFLALSTSVLIALFIQ HLSEVSIKEYTFVAIPVFIYGFVFITLSERSVKWMFVALILIIVLFIFIKYKSLLTRTSM MVLLVVLFLAQQVLMTNDSRKITIEPYQTTIKTINDSSYRSPVLNKKIKYMHQSSTNPLK RLDYFSYYALNSPMLYHYNGTSLYSSIFDGDILKYYDKTLQINMPVDKNSTYRYLNNRAN LMSLWDVQDRLRHPDDLNMPYGFKKKELITDKKDQWIHSVNTINYPSAHVTNKIYDPKTL KSPLDREQAMLKGVVLNHKSQANTDFKPNTNLLSNAKQNLNHANWIDSKHLKVKQNNGGV TLNLPRNIVKNYKDMYIEMDVELLSPDKEHKVGVNEYSQERNRLSYKYRRFVSPVTMRAK ASNQLNIKMSKGVYRFKVKGIYGENYQTLKKASQQLQPVKVKKERNGFTIIKKKKDHGYL VLPMVYAKGMHAMANGKPLKVQQGNGIMTTIPVKEGQTKIKLSYTPPYFYLLITVSCIGI ILSILFTHYVKRK Prediction of potential genes in microbial genomes Time: Sun May 29 07:42:12 2011 Seq name: gi|224999888|gb|ACJC01000112.1| Staphylococcus epidermidis W23144 contig00152, whole genome shotgun sequence Length of sequence - 81190 bp Number of predicted genes - 68, with homology - 67 Number of transcription units - 22, operones - 17 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1995 770 ## COG4485 Predicted membrane protein - Prom 2134 - 2193 7.0 + Prom 2222 - 2281 4.1 2 2 Op 1 8/0.000 + CDS 2323 - 3186 1159 ## COG1161 Predicted GTPases 3 2 Op 2 1/1.000 + CDS 3191 - 3961 893 ## COG0164 Ribonuclease HII + Prom 3978 - 4037 12.6 4 3 Op 1 39/0.000 + CDS 4069 - 5235 1561 ## COG0045 Succinyl-CoA synthetase, beta subunit 5 3 Op 2 2/0.000 + CDS 5257 - 6165 1201 ## COG0074 Succinyl-CoA synthetase, alpha subunit + Term 6185 - 6235 10.3 + Prom 6700 - 6759 11.5 6 4 Op 1 13/0.000 + CDS 6971 - 7828 591 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake + Prom 7920 - 7979 7.6 7 4 Op 2 6/0.000 + CDS 8011 - 10080 2011 ## COG0550 Topoisomerase IA 8 4 Op 3 5/0.000 + CDS 10105 - 11412 1550 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation + Term 11429 - 11465 5.0 + Prom 11569 - 11628 5.1 9 5 Op 1 4/0.000 + CDS 11666 - 12526 664 ## COG4974 Site-specific recombinase XerD 10 5 Op 2 24/0.000 + CDS 12530 - 13072 742 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 11 5 Op 3 4/0.000 + CDS 13142 - 14545 1374 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 12 5 Op 4 2/0.000 + CDS 14569 - 15342 927 ## COG4465 Pleiotropic transcriptional repressor + Prom 15527 - 15586 5.2 13 5 Op 5 38/0.000 + CDS 15699 - 16487 1323 ## PROTEIN SUPPORTED gi|27467850|ref|NP_764487.1| 30S ribosomal protein S2 + Term 16502 - 16542 4.2 + Prom 16540 - 16599 7.7 14 6 Op 1 24/0.000 + CDS 16639 - 17517 624 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts + Term 17590 - 17630 3.2 + Prom 17534 - 17593 7.2 15 6 Op 2 33/0.000 + CDS 17658 - 18380 837 ## COG0528 Uridylate kinase 16 6 Op 3 19/0.000 + CDS 18397 - 18951 781 ## COG0233 Ribosome recycling factor + Term 19038 - 19075 3.2 + Prom 19057 - 19116 11.6 17 7 Op 1 32/0.000 + CDS 19172 - 19942 760 ## COG0020 Undecaprenyl pyrophosphate synthase 18 7 Op 2 12/0.000 + CDS 19946 - 20728 923 ## COG0575 CDP-diglyceride synthetase + Prom 20789 - 20848 5.9 19 7 Op 3 7/0.000 + CDS 20961 - 22247 1171 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 20 7 Op 4 5/0.000 + CDS 22266 - 23969 2062 ## COG0442 Prolyl-tRNA synthetase + Prom 24063 - 24122 6.6 21 7 Op 5 4/0.000 + CDS 24219 - 28529 4268 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) + Term 28654 - 28696 4.3 + Prom 28572 - 28631 4.6 22 7 Op 6 32/0.000 + CDS 28709 - 29176 508 ## COG0779 Uncharacterized protein conserved in bacteria 23 7 Op 7 22/0.000 + CDS 29198 - 30421 784 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 24 7 Op 8 8/0.000 + CDS 30439 - 30723 165 ## PROTEIN SUPPORTED gi|225119985|ref|YP_002686792.1| LSU ribosomal protein L7AE 25 7 Op 9 10/0.000 + CDS 30723 - 31040 519 ## PROTEIN SUPPORTED gi|242242551|ref|ZP_04796996.1| ribosomal protein L7/L12 26 7 Op 10 32/0.000 + CDS 31045 - 33207 2940 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) + Term 33239 - 33305 8.2 + Prom 33377 - 33436 6.3 27 8 Op 1 26/0.000 + CDS 33508 - 33858 466 ## COG0858 Ribosome-binding factor A + Term 33868 - 33926 1.2 + Prom 33909 - 33968 7.4 28 8 Op 2 12/0.000 + CDS 33996 - 34913 951 ## COG0130 Pseudouridine synthase 29 8 Op 3 9/0.000 + CDS 34929 - 35900 713 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 30 8 Op 4 26/0.000 + CDS 36019 - 36288 450 ## PROTEIN SUPPORTED gi|27467868|ref|NP_764505.1| 30S ribosomal protein S15 + Term 36305 - 36344 3.0 + Prom 36318 - 36377 10.6 31 8 Op 5 1/1.000 + CDS 36420 - 38525 1698 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase + Prom 38559 - 38618 6.7 32 9 Op 1 2/0.000 + CDS 38862 - 40568 1918 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Prom 40714 - 40773 5.7 33 9 Op 2 3/0.000 + CDS 40835 - 43228 2128 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 34 9 Op 3 2/0.000 + CDS 43231 - 43944 723 ## COG2188 Transcriptional regulators 35 9 Op 4 14/0.000 + CDS 44064 - 45245 893 ## COG0612 Predicted Zn-dependent peptidases 36 9 Op 5 4/0.000 + CDS 45245 - 46534 1066 ## COG0612 Predicted Zn-dependent peptidases 37 9 Op 6 . + CDS 46531 - 47235 601 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 47299 - 47339 0.1 + Prom 47284 - 47343 7.2 38 10 Op 1 . + CDS 47389 - 48216 845 ## SERP0848 ACT domain-containing protein 39 10 Op 2 5/0.000 + CDS 48235 - 48627 339 ## COG1426 Uncharacterized protein conserved in bacteria 40 10 Op 3 4/0.000 + CDS 48656 - 49237 276 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase + Term 49351 - 49405 6.3 + Prom 49591 - 49650 9.3 41 11 Op 1 5/0.000 + CDS 49685 - 50830 1242 ## COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA + Prom 50900 - 50959 5.5 42 11 Op 2 4/0.000 + CDS 51001 - 52050 1325 ## COG0468 RecA/RadA recombinase + Term 52064 - 52113 3.5 + Prom 52152 - 52211 8.8 43 11 Op 3 . + CDS 52276 - 53835 1925 ## COG1418 Predicted HD superfamily hydrolase + Term 53844 - 53884 6.2 - Term 53882 - 53913 4.1 44 12 Tu 1 . - CDS 53924 - 54139 288 ## SERP0854 hypothetical protein - Prom 54169 - 54228 6.5 + Prom 54215 - 54274 5.2 45 13 Tu 1 . + CDS 54302 - 55096 981 ## COG1692 Uncharacterized protein conserved in bacteria + Term 55133 - 55170 1.5 + Prom 55114 - 55173 5.3 46 14 Op 1 23/0.000 + CDS 55209 - 56969 1775 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit 47 14 Op 2 . + CDS 56970 - 57836 904 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit + Term 58043 - 58097 5.4 + Prom 58277 - 58336 13.0 48 15 Op 1 . + CDS 58448 - 59047 709 ## COG4195 Phage-related replication protein 49 15 Op 2 1/1.000 + CDS 59104 - 59394 357 ## COG0011 Uncharacterized conserved protein + Term 59429 - 59481 7.1 50 16 Op 1 3/0.000 + CDS 59737 - 61281 494 ## PROTEIN SUPPORTED gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase 51 16 Op 2 1/1.000 + CDS 61283 - 61648 420 ## COG4550 Predicted membrane protein 52 16 Op 3 1/1.000 + CDS 61672 - 62166 488 ## COG4732 Predicted membrane protein + Prom 62272 - 62331 8.9 53 17 Op 1 6/0.000 + CDS 62364 - 64985 2614 ## COG0249 Mismatch repair ATPase (MutS family) 54 17 Op 2 2/0.000 + CDS 65000 - 66937 1700 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 55 17 Op 3 . + CDS 66951 - 67484 564 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 56 17 Op 4 . + CDS 67408 - 67563 77 ## + Term 67793 - 67844 3.3 + Prom 67702 - 67761 7.6 57 18 Op 1 18/0.000 + CDS 67855 - 68679 1027 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) + Term 68715 - 68757 3.4 + Prom 68725 - 68784 6.9 58 18 Op 2 5/0.000 + CDS 68833 - 70332 2046 ## COG0554 Glycerol kinase + Term 70422 - 70488 2.6 + Prom 70340 - 70399 8.2 59 18 Op 3 1/1.000 + CDS 70509 - 72182 2120 ## COG0578 Glycerol-3-phosphate dehydrogenase + Term 72213 - 72280 13.2 + Prom 72219 - 72278 7.2 60 19 Op 1 1/1.000 + CDS 72389 - 73330 859 ## COG2267 Lysophospholipase 61 19 Op 2 15/0.000 + CDS 73342 - 74340 727 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 62 19 Op 3 . + CDS 74294 - 74533 322 ## COG1923 Uncharacterized host factor I protein - Term 74526 - 74572 -0.9 63 20 Tu 1 . - CDS 74752 - 75231 524 ## COG0386 Glutathione peroxidase - Prom 75330 - 75389 4.5 + Prom 75201 - 75260 6.7 64 21 Op 1 4/0.000 + CDS 75336 - 76586 1222 ## COG2262 GTPases 65 21 Op 2 3/0.000 + CDS 76602 - 77840 1241 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance + Prom 78163 - 78222 9.6 66 21 Op 3 5/0.000 + CDS 78320 - 78685 431 ## COG0789 Predicted transcriptional regulators 67 21 Op 4 . + CDS 78704 - 80044 1586 ## COG0174 Glutamine synthetase + Term 80082 - 80120 7.0 + Prom 80100 - 80159 8.1 68 22 Tu 1 . + CDS 80214 - 80858 505 ## SAAV_0849 hypothetical protein + Term 81070 - 81106 4.2 Predicted protein(s) >gi|224999888|gb|ACJC01000112.1| GENE 1 3 - 1995 770 664 aa, chain - ## HITS:1 COG:BS_yfhO KEGG:ns NR:ns ## COG: BS_yfhO COG4485 # Protein_GI_number: 16077927 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 43 658 1 619 819 280 31.0 6e-75 MRRKACFIILLITLSLIGHSYIIFRFHHDGILSTGPNDGMEQMIPIQMYLYHQWTQGNLF YSTHLGLGGDFFTDLSYYFSTNLIFILNVPIIKLCEIFFSLNTNQILLWMYNALIVSIIK ATIALFCTYLFSYYISKNKIISLLISFIFVMSPLYFRFTIYWPFFSDTFIWLPLLLLGIE RLLRDFKVGLFILTVSLILINNFYFAYYFLIIGIGYTLIRIIYRHPKDSLTRWQASLTII CSALLALGNSMFVFFHGVQSFLNNRRQSFTGQVNWIEHLSKDTNIFFDNYLIVVLFLSIQ ALLTIKLYKHFYYKLFALLLLATIIFAFLPFVDQLFNGFSAPQKRWHFILAFNSSILIGL FVKYFKTIRPKTYIYTNLIAQSVIYISSISYHTFLPWISLVPVVSVIGLLILLIKEKKVR YYLTHIYSISIAALSLMITFVFIKNQIFFQDHINRANKRYINSSLYSSAMQRSLVKEMKQ TKNDDQRINWRVDEQDNTPMYQNFKGLSIYSSIFHHNILDFYYDALKINLAEESVSRYQS TNARQNIESLFSVKYLMMKDYQNFIPSYFKKVKSRGQYIIYKNQLLLPSVKVTQNIYNHK SLKKPIDREHAMINGAIVTSKGESYHSKVKNLLDQTRVSTQNITRYSNNELIVNKESGII KLHL >gi|224999888|gb|ACJC01000112.1| GENE 2 2323 - 3186 1159 287 aa, chain + ## HITS:1 COG:SA1086 KEGG:ns NR:ns ## COG: SA1086 COG1161 # Protein_GI_number: 15926826 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 1 287 1 287 294 475 82.0 1e-134 MAIQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKK DMTNLKELEKWETYFKDEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRA IRAMIVGIPNVGKSTLINKLAKRSIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKF EDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDISALKKHYNIDTHEDAEILDWFD AIGRRRGLLQKGNEVDYESVIELIINDMRNAKIGTYCFDILKEMKSE >gi|224999888|gb|ACJC01000112.1| GENE 3 3191 - 3961 893 256 aa, chain + ## HITS:1 COG:SA1087 KEGG:ns NR:ns ## COG: SA1087 COG0164 # Protein_GI_number: 15926827 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Staphylococcus aureus N315 # 1 255 1 255 255 320 63.0 2e-87 MSLTIKEIKEKLSQIETLEELHKHEANNDSRKGVINAIKSREKNILKQQALEEHYLSMNQ YENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLN QNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINHLDVTPTHLLIDAMTLDIDIPQ TSIIKGDAKSVSIAAASIMAKEYRDQYMRQLSKQFPDYGFDKNAGYGTKQHLEAIDRVGF INEHRQSFEPIKSMMK >gi|224999888|gb|ACJC01000112.1| GENE 4 4069 - 5235 1561 388 aa, chain + ## HITS:1 COG:SA1088 KEGG:ns NR:ns ## COG: SA1088 COG0045 # Protein_GI_number: 15926828 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Staphylococcus aureus N315 # 1 388 1 388 388 677 93.0 0 MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVYVVKAQIHAGGRGKAGGV KIAKSLSEVETYANELLGKQLVTHQTGPEGKEVKRLYIEEGCDIQKEYYVGFVIDRATDK VTLMASEEGGTEIEEVAAQTPEKIFKETIDPVVGLSPYQARRIAFNINIPKESVGKATKF LLALYNVFIEKDCSIVEINPLVTTGDGQVLALDAKLNFDDNALFRHKDILELRDLEEEDP KEIEASKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDVGGGATKEKVTE AFKIILGDDNVKGIFVNIFGGIMKCDVIAEGIVAAVKEVELTLPLVVRLEGTNVERGKAI LNESGLAIEPAATMAEGAQKIVKLVKEA >gi|224999888|gb|ACJC01000112.1| GENE 5 5257 - 6165 1201 302 aa, chain + ## HITS:1 COG:SA1089 KEGG:ns NR:ns ## COG: SA1089 COG0074 # Protein_GI_number: 15926829 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Staphylococcus aureus N315 # 1 302 1 302 302 517 93.0 1e-146 MSVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVEEA KNETGANVSVVYVPAPFAADSIIEAADADLDMVICITEHIPVVDMVKVKRYLQGRKTRLV GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG DPVNGTNFIDVLKAFNEDSETKAVVMIGEIGGTAEEEAAQWIKENMNKPVVGFIGGQTAP PGKRMGHAGAIISGGKGTASEKIKTLNDCGVETADTPSEIGTTLIDAAKKAGIYEELLTI KK >gi|224999888|gb|ACJC01000112.1| GENE 6 6971 - 7828 591 285 aa, chain + ## HITS:1 COG:SA1092 KEGG:ns NR:ns ## COG: SA1092 COG0758 # Protein_GI_number: 15926832 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Staphylococcus aureus N315 # 1 283 6 288 290 326 57.0 3e-89 MLKLYWANFTTAQLHHLTRKYPDFLSENVFHQHDMIKRWLTDRNSERLWNKYERFKKLKL MDIIKEMKKANVSFTTYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNAT QYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQTALKYFLPTIGVLEFGHCYHYPKAT LNLRTKVERNGLVISEYPPFSPINKYKFPERNRLISGLSRGVFITEAEERSGSQITIDCA LEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILIDYLF >gi|224999888|gb|ACJC01000112.1| GENE 7 8011 - 10080 2011 689 aa, chain + ## HITS:1 COG:SA1093_1 KEGG:ns NR:ns ## COG: SA1093_1 COG0550 # Protein_GI_number: 15926833 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Staphylococcus aureus N315 # 1 571 1 571 571 962 89.0 0 MADNLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDTEDNYEPKYITIRGK GPVVKDLKKHAKKAKKIFLASDPDREGEAIAWHLSKILELEDSKENRVVFNEITKDAVKD SFKHPRGIEMDLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDREN EIRNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPYKLNNKDDVQKITEALNGDQFEITN VNRKEKTRYPAHPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKRQGTVGLITYMR TDSTRISTSAKSEAQQYITDKYGEQYVSQRKSSGKQGDQDAHEAIRPTSTMRTPDDMKAF LTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQNDIKFRANGQTIKFKGFMTLYVEAK DDKENDKENKLPQLDKGDKVTATKIEPAQHFTQPPPRYTEARLVKTLEELKIGRPSTYAP TIDTIQKRNYVKLESKRFIPTELGEIVYEQVKEYFPEIIDVEFTVNMETLLDKIAEGDMN WRKVIGDFYNSFKQDVERAESEMEKIEIKDEPAGEDCEVCGSPMVIKMGRYGKFMACSNF PDCRNTKAIVKTIGVTCPKCNEGDVVERKSKKNRIFYGCSRYPECDFISWDKPVGRDCPK CHHYLVNKKKGKSSQVVCSNCDYEEEVQK >gi|224999888|gb|ACJC01000112.1| GENE 8 10105 - 11412 1550 435 aa, chain + ## HITS:1 COG:SA1094 KEGG:ns NR:ns ## COG: SA1094 COG1206 # Protein_GI_number: 15926834 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Staphylococcus aureus N315 # 1 435 1 435 435 808 91.0 0 MTQKVNVVGAGLAGSEAAYQLAQRGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNA LTNAVGVLKEEMRHLDSLIITSADKARVPAGGALAVDRHDFAGYITDTLRNHPNITVLNE EVNHIPEGYTIIATGPLTTEHLAQEIVDITGKDQLYFYDAAAPIIEKDSINMDKVYLKSR YDKGEAAYLNCPMTEEEFNRFYDAVLEAEVATVNEFEKEKYFEGCMPFEVMAERGRKTLL FGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIRLIPGLEN VDIVRYGVMHRNTFINSPDVLNEKYELKGHDNLYFAGQMTGVEGYVESAASGLVAGINLA HKILGKGEVIFPRETMIGSMAYYISHAKNEKNFQPMNANFGLLPSLEKRIKDKKERYETQ AKRALEYLDNYKQTL >gi|224999888|gb|ACJC01000112.1| GENE 9 11666 - 12526 664 286 aa, chain + ## HITS:1 COG:SA1095 KEGG:ns NR:ns ## COG: SA1095 COG4974 # Protein_GI_number: 15926835 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Staphylococcus aureus N315 # 2 284 12 294 298 456 82.0 1e-128 MLKVERNFSEYTLKSYHDDLVQFNNFLEREHLQLETFEYKDARNYLAFLYSNQLKRTTVS RKISTLRTFYEFWMTQNNSIINPFVQLVHPKKEKYLPQFFYEEEMEALFQTVEHDNKKGI RDKVIIELLYATGIRVSELINIKLKDIDMNLPGVKVLGKGNKERFIPFGEFCRQSIERYL EEFQPKQLANHDYLIVNMKGDPITERGVRYVLNDVVKRTAGVNDIHPHKLRHTFATHLLN QGADLRTVQSLLGHVNLSTTGRYTHVSNQQLRKVYLNAHPRAKKGE >gi|224999888|gb|ACJC01000112.1| GENE 10 12530 - 13072 742 180 aa, chain + ## HITS:1 COG:SA1096 KEGG:ns NR:ns ## COG: SA1096 COG5405 # Protein_GI_number: 15926836 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Staphylococcus aureus N315 # 2 180 3 181 181 315 94.0 2e-86 MDNSLHATTIYAVRHNGEAAMAGDGQVTLGQQVIMKQTARKVRRLYEGKVLAGFAGSVAD AFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEAMLIVMDKDAILIVSGTGEV IAPDDDLIAIGSGGNYALSAGRALKRHATQLSASEMAYESLKVAADICVFTNDNIIVETL >gi|224999888|gb|ACJC01000112.1| GENE 11 13142 - 14545 1374 467 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 8 467 8 466 466 533 59 1e-151 MDTNGIKLTPKDIVSKLNEYIVGQNDAKRKVAIALRNRYRRSLLKEEEKQEIAPKNILMI GPTGVGKTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVAVRLVKDEKK SLVKDEATKKANDKLVKLLVPSLKKKAAQGNNPLENLFGGAIPNFGQNQDEEEEPPTEEI KTKRSEIKKQLEQGKLENEKVRIKVEQDPASMGMLGTNQNQQIQDMMNQLMPKKKVEREV SVETARKILADDFADELIDQETANQQALELAEQMGIIFIDEIDKVATNNQNSGQDVSRQG VQRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLS VEDFVRILTEPKLSLVKQYEALLQTEEVTVNFSEDAIQRLAEIAYQVNQDTDNIGARRLH TILEKMLEDLSFEAPSMPNAVVDITPQYVDDKLKSISTNKDLSAFIL >gi|224999888|gb|ACJC01000112.1| GENE 12 14569 - 15342 927 257 aa, chain + ## HITS:1 COG:SA1098 KEGG:ns NR:ns ## COG: SA1098 COG4465 # Protein_GI_number: 15926838 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Staphylococcus aureus N315 # 1 257 1 257 257 422 93.0 1e-118 MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISNVTVTNVFIVSRRGKILGSCLNELLKSE RIKDMLEDRHIPREYTEELMNVKQTESNIDIDNELTVFPPENREVFLNSRTTIFPILGGG ERLGTLVLGRVQDDFNENDLVLGEYAATVIGMEILREKHNEVEKEARDKAAITMAINSLS YSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT FIKVKKDKFLDELEKNK >gi|224999888|gb|ACJC01000112.1| GENE 13 15699 - 16487 1323 262 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467850|ref|NP_764487.1| 30S ribosomal protein S2 [Staphylococcus epidermidis ATCC 12228] # 1 262 1 262 262 514 100 1e-145 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVEEAYNFVKQI SEEGGKVLFVGTKKQAQESVKAEAERAGQFYVNQRWLGGILTNYKTISKRIKRISEIEKM EEDGLFEVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLN IPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTGKMADAILEGQQGVSNEEVAAEQNIN LDDKEESEQAETTEENTSVESN >gi|224999888|gb|ACJC01000112.1| GENE 14 16639 - 17517 624 292 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 3 287 4 275 283 244 46 8e-64 MAISAKLVKELREKTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGL VHVEVKGNEAAIVEINSETDFVARNEGFQELVKEIANHILDSKVETVDALMESKLSSGKT VDERMKEAISTIGEKLSIRRFSIRTKTDNDAFGAYLHMGGRIGVLTVVEGTTDEEAAKDV AMHIAAINPKYVSSEQVSEEEINHEREVLKQQALNEGKPEKIVEKMVEGRLRKYLQEICA VDQNFVKNPDETVEAFLKAKGGKLTDFVRYEVGEGMEKREENFAEEVKGQMK >gi|224999888|gb|ACJC01000112.1| GENE 15 17658 - 18380 837 240 aa, chain + ## HITS:1 COG:SA1101 KEGG:ns NR:ns ## COG: SA1101 COG0528 # Protein_GI_number: 15926841 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Staphylococcus aureus N315 # 1 240 1 240 240 447 96.0 1e-126 MAQTSKYKRVVLKLSGEALAGDKGFGINPIIIKSVAQQVAEVAKMDCEIAVIVGGGNIWR GKTGSDLGMDRGTADYMGMLATVMNALALQDSLEQLDCDTRVLTSIEMKQVAEPYIRRRA IRHLEKKRVVIFAAGIGNPYFSTDTTAALRAAEVEADVILMGKNNVDGVYSADPKVDANA IKYEHLTHIQMLQEGLQVMDSTASSFCMDNNIPLNVFSIMEEGNIKRAVMGEKIGTLITK >gi|224999888|gb|ACJC01000112.1| GENE 16 18397 - 18951 781 184 aa, chain + ## HITS:1 COG:SA1102 KEGG:ns NR:ns ## COG: SA1102 COG0233 # Protein_GI_number: 15926842 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Staphylococcus aureus N315 # 1 184 1 184 184 264 91.0 6e-71 MSDIIKDTKSRMQKSIDNLSRELANISAGRANSNLLNGVTVDYYGAPTPVQQLASINVPE ARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRISVPALTEERRKELVKEVKKIG EDAKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTDDVQKATDNSIKDIDQLVADKEKD IMSV >gi|224999888|gb|ACJC01000112.1| GENE 17 19172 - 19942 760 256 aa, chain + ## HITS:1 COG:SA1103 KEGG:ns NR:ns ## COG: SA1103 COG0020 # Protein_GI_number: 15926843 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 404 78.0 1e-112 MFKKLKNKNKTETKHNNDLDIHNIPEHVAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKI TREASDLGIKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKIETIGFY EGLPQSTINAIDFAKAKTQNNTGLTLVFAINYGGRAEIIQSMKTIYNELQLNGQGSDVID EALIKRHLMTHSYPDPDLLIRTSGEQRISNFLIWQASYSEFIFNEKLWPDFDEKELRECL KIYQSRQRRFGGLSEE >gi|224999888|gb|ACJC01000112.1| GENE 18 19946 - 20728 923 260 aa, chain + ## HITS:1 COG:SA1104 KEGG:ns NR:ns ## COG: SA1104 COG0575 # Protein_GI_number: 15926844 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Staphylococcus aureus N315 # 1 260 1 260 260 377 86.0 1e-104 MKVRTLTAIIALLIFLPILLKGGLILMLFAFLLALIALKELLNMNMIKFLSIPGLISALA LIIIMLPQDAGEWVQVIQLKGLIAMSFIVLSYTVLSKNRFSFMDAAFCLMSVAYVGIGFM YFYETRSEGLRYILFAFLIVWLTDTGAYIFGRLMGKHKLWPVISPNKTIEGFFGGILCSI LVPLVMQMFVDLHMNIWLLLLVTIVLSMFGQLGDLVESGFKRHFGVKDSGRILPGHGGIL DRFDSFMFVLPLLNILLIQT >gi|224999888|gb|ACJC01000112.1| GENE 19 20961 - 22247 1171 428 aa, chain + ## HITS:1 COG:SA1105 KEGG:ns NR:ns ## COG: SA1105 COG0750 # Protein_GI_number: 15926845 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Staphylococcus aureus N315 # 1 428 1 428 428 706 80.0 0 MSILITIISFIIVFGVLVTVHEYGHMFFAKRAGIMCPEFAIGMGPKIFSFRKDETLYTIR LLPVGGYVRMAGDGLEEPPVQPGMNVKIKLNNQDEITHIILDDQHKFQQIEAIEVKKCDF KDDLYIEGITSYDDERHHFTIAKKAFFVENGSLVQIAPRDRQFAHKKPLPKFLTLFAGPL FNFILALVLFIGLAYYQGTPTNVIGEVVKKSPADEAGLHKGDKIVQVGNHKIKNFDDIKH VLDQNRTAKTTVKIKRDGQTKSVDLQPKKVERKITKTKTQTTYQIGFAPTTEHSVFKPIS YGIYNFFDKGKLIFTAVVGMLASIFTGEFSFDMLNGPVGIYHSVDSVVKSGIINLVGYTA LLSVNLGIMNLLPIPALDGGRILFVLYEAIFRKPVNKKAETGIIAVGALFVVIIMILVTW NDIQRYFL >gi|224999888|gb|ACJC01000112.1| GENE 20 22266 - 23969 2062 567 aa, chain + ## HITS:1 COG:SA1106 KEGG:ns NR:ns ## COG: SA1106 COG0442 # Protein_GI_number: 15926846 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 567 1 567 567 961 81.0 0 MKQSKVFIPTMREVPAEAEALSHRLLLKAGLIKQSTSGIYSYLPLATRVLNNISKIIREE MESIDAVEILMPALQQAELWEESGRWSAYGPELMRLKDRNGREFALGPTHEEVVTSLVRD ELKSYKQLPLTLFQIQSKYRDEKRPRFGLLRGREFLMKDAYSFHSDEASLDATYQDMYQA YSRIFKRVGINARPVVADSGAIGGSHTHEFMALSEIGEDTIVYSNESDYAANIEKAEVVY HPSHKHSELAELTKVETPNVKTAQEVADYLERPLDEIVKTMIFKIDGEFIMLLVRGHHEL NEVKLKAYFGTEHVEMATQDEIVNLVDANPGSIGPIFEKDIKIYADNYLQDLNNFVVGAN EDHYHYINVNIGRDFDVTEYGDFRFITQGEMLSDGSGVAQFAEGIEVGQVFKLGTKYSES MNATFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIWPKSVTPFDIHLITINPK KEDQRTLGDQLYQKLMDSYDILYDDRKERAGVKFNDSDLIGLPVRVVVGKRAEEGIVEVK QRFNGLSEEVQIDELETYLQDLFKNIK >gi|224999888|gb|ACJC01000112.1| GENE 21 24219 - 28529 4268 1436 aa, chain + ## HITS:1 COG:SA1107 KEGG:ns NR:ns ## COG: SA1107 COG2176 # Protein_GI_number: 15926847 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Staphylococcus aureus N315 # 1 1436 3 1438 1438 2667 90.0 0 MTNREKFKVLADQIKISNQLEQDILEQGELTRIDVSNKNRTWTFQISLPHFLSHEDYLLF THAIEEEFKEIATVAIDFSIKDTNNQDEFALKYFGHCIDQTRLSPKVKGQLKQKKLIMSG NVLKVLVSNDIERNHFDKACNGSLIKAFRQCGFEIDKVVFETDTTNHDDDLASLEAHIQQ EDEQSAREATEKLEKMKAEKAKQQDNNESTVEKCQIGKPIQIENIKPIESIIEEEFKVAI EGVIFDINLKELKSGRHIVELKVTDYTDSLVLKMFTRKNKDDLEHFKALSVGKWVRAQGR IEEDTFVRDLVMMMSDIEEIKKTPKQDKAENKRVEFHLHTSMSQMDGIPNISAYVEQAAK WGHRALAVTDHNVVQAFPDAHNAAEKHGIKMIYGMEGMLVDDGVPIAYKPTDRNLKDATY VVFDVETTGLSNQYDKIIELAAVKVHNGEIIDKFERFSNPHERLSETIINLTHITDDMLT DAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRTIN TEYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFIKMVQQMKELGVNNHLEINKKLTN EDAYKRARPSHVTLIVQNQEGLKNLFKIVSASLVKYYYRTPRIPRSLLNEYREGILIGTA CDEGELFTAVMQKDQSEVEKIAKFYDFIEVQPPALYQDLMDRELIRDNETLTQIYKRLID AGKSANIPVIATGNAHYLFEHDAIARKILIASQPGNPLNRSTLPEAHFRTTDEMLDDFHF LGEEKAYEIVVTNTNELANKIEKVVPIKDKLFTPRMDGANEEIRELSYSNAKKLYGEDLP QIVIDRLEKELDSIIGNGFSVIYLISQRLVKKSLDDGYLVGSRGSVGSSFVATMTEITEV NPLPPHYICSHCKTSEFFDDGSVGSGFDLPDKKCPTCGNELIKEGQDIPFETFLGFKGDK VPDIDLNFSGEYQPNAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHKRG AEIDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQFPADDQSAAWMTTHFDFHSI HDNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKETMQIFSGPESLGVTEDEILCKT GTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRQGICDLSSVI GCRDDIMVYLMYAGLEPSMAFKTMEFVRKGRGLTDEMVEAMKENNVPDWYLDSCRKIKYM FPKAHAAAYVLMAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKTSIRNTVKDMYS RYMDLGKKEKDVLTVLEIMNEMAHRGFRLQPISLEKSQAFDFIIEGDTLIPPFISVPGLG ENVAQRIVEAREEGPFLSKEDLNKKAGLSQKVIDYLDELGSLPDLPDKAQLSIFDM >gi|224999888|gb|ACJC01000112.1| GENE 22 28709 - 29176 508 155 aa, chain + ## HITS:1 COG:SA1108 KEGG:ns NR:ns ## COG: SA1108 COG0779 # Protein_GI_number: 15926848 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 155 1 155 155 238 81.0 2e-63 MSKITEQVEALIQPVLNDLDFELVDIEYVKEGKDHFLRISIDKEGGVDLNDCTLASEKIS EVMDENDPIPEMYYLDVASPGAERPIKKEKDFYNAINQPIFVSLYAPIEGDKEWLGILKS VNDESINMEVKEKAKTKEIEIPRNKIAKARHAVMI >gi|224999888|gb|ACJC01000112.1| GENE 23 29198 - 30421 784 407 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 1 346 3 350 537 306 45 2e-82 MSSNELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGSFRVI ARKEVVEEVFDDRDEVDLSTALVKNPAYEVGDIYEQDVTPKDFGRVGAQAAKQAVMQRLR DAEREILYDEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIK VYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYS DNPDIDAVGACVGSKGARVEAVVEELGGEKIDIVQWDEDPKVFVRNALSPSQVLEVIVDE ENQSTVVVVPDYQLSLAIGKRGQNARLAAKLTSWKIDIKSESDAREAGIYPVIETEEVAD EIVNSGDEDVEFDNVNLEETNLTSTELAAETDEEKTAKTEEDNDTES >gi|224999888|gb|ACJC01000112.1| GENE 24 30439 - 30723 165 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225119985|ref|YP_002686792.1| LSU ribosomal protein L7AE [Rhodobacteraceae bacterium KLH11] # 7 87 14 98 207 68 40 2e-15 MRKKKIPMRKCIISNEMRPKKDMIRVVINKEGEIFADATGKKQGRGAYVSKDVALVEKAQ QKEVLEKYFNAAKDTLDPVYKEIIRLIYREEIPK >gi|224999888|gb|ACJC01000112.1| GENE 25 30723 - 31040 519 105 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242242551|ref|ZP_04796996.1| ribosomal protein L7/L12 [Staphylococcus epidermidis W23144] # 1 105 1 105 105 204 100 1e-51 MTKMKIFNLLGLAMRAGKIKSGESVILNELKKKQIKLVILASDASSNTLKQMNDKCNSYQ VPLRVFGTRNELGLAIGKSDRVNIGITDNGFAKKLLSMIDEYGKE >gi|224999888|gb|ACJC01000112.1| GENE 26 31045 - 33207 2940 720 aa, chain + ## HITS:1 COG:SA1112 KEGG:ns NR:ns ## COG: SA1112 COG0532 # Protein_GI_number: 15926852 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Staphylococcus aureus N315 # 1 720 1 705 705 1051 85.0 0 MSKKRIYEYAKELNLKSKEIIDELKSMNVEVSNHMQALEEEQIKALDKKFKASQAKDTNK QNTQNNHQKSNNKQNSNDKEKQQSKNNSKSTKKKEQNNKGKQQNKNNKTNKNQKNNKNKK NNKNNKPQNEVAETKEMPSKITYQEGITVGELAEKLNVESAGIIKKLFLLGIMANINQSL DEETLELIADDYGVEIEKEVVVDEEDLSIYFDDKTDDSDAIERPAVVTIMGHVDHGKTTL LDSIRNTKVTEGEAGGITQHIGAYQIENSGKKITFLDTPGHAAFTTMRARGAQVTDITIL VVAADDGVMPQTIEAINHAKEAEVPTIVAVNKIDKPTANPDRVMQELTEYGLIPEDWGGD TIFVPLSALSGDGIDDLLEMIGLVAEVQELKANPNKQAVGTVIEAELDKSRGPAASLLVQ NGTLNVGDAIVVGNTYGRIRAMVNDLGKRIKSAGPSTPVEITGINDVPLAGDRFVVFGDE KQARRIGEARHEASVIQQRQESKNVSLDNLFEQMKQGEMKDLNVIIKGDVQGSVEALAAS LMKIDVEGVNVRIIHTAVGAINESDVTLANASNGIIIGFNVRPDAGAKRAAEAENVDMRL HRVIYNVIEEIESAMKGLLDPEFEEQVIGQAEVRQTFKVSKVGTIAGSYVTEGKITRNAG VRVIRDGIVLFEGELDTLKRFKDDAKEVAQGYECGITIEKYNDLKEGDIIEAFEMVEIQR >gi|224999888|gb|ACJC01000112.1| GENE 27 33508 - 33858 466 116 aa, chain + ## HITS:1 COG:SA1113 KEGG:ns NR:ns ## COG: SA1113 COG0858 # Protein_GI_number: 15926853 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Staphylococcus aureus N315 # 1 116 1 116 116 179 84.0 8e-46 MNNIRAERVGEQMKQEIMDIVNNKVKDPRVGFLTITDVELTNDLSQAKVYLTVLGNDKEV DNTFKALHKATGFIKSELGSRMRLRIIPELTFEYDESIEYGNKIERMIQDLHKNDK >gi|224999888|gb|ACJC01000112.1| GENE 28 33996 - 34913 951 305 aa, chain + ## HITS:1 COG:SA1114 KEGG:ns NR:ns ## COG: SA1114 COG0130 # Protein_GI_number: 15926854 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Staphylococcus aureus N315 # 1 305 1 305 305 451 72.0 1e-127 MYNGILPVFKERGLTSHDVVFKLRKILKMKKIGHTGTLDPEVNGVLPICLGDATKVSDYI MEMGKTYHATVTLGMSTTTEDQTGDILETRAVDKNDINEDTIDQVLQQFEGHIQQIPPMY SSVKVNGRKLYEYARNNETVERPKRQVFIKDIHRISEVTFQEQTCHFEVEVTCGKGTYIR TLATDIGLKLGFPAHMSRLTRIASGGFQLESSLTIDQIKELHEHDSLHNELFPIEYGLKG LKSFQVKDSNFKKKICNGQKFHKKVLSQDVKEPFIFVDNSTQKVLAIYIVHPDKPYEIKP KKVFN >gi|224999888|gb|ACJC01000112.1| GENE 29 34929 - 35900 713 323 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 312 1 313 317 279 45 4e-74 MKVIEVTHPIQSNQFITENVAMAFGFFDGMHRGHDKVFQVLDEKAKEHQLKKAVMTFDPH PSVVLNPERKRTTYLTPLSDKLEMIAEHGIDYCIVINFSSRFASVTSDDFIKKYIINNHV KEVIAGFDFTFGKFGKGNMTVLQESKAFNTTIVGKQEMDSEKISTTAIRQALTDGHLQKA NDELGYIYRIKGTVVQGEKRGRTIGFPTANVQPSDDYVLPKKGVYAVSMEIGPESKLHRG VANVGVKPTFHDPARAELVIEVNIFDFNENIYGERVTVYWHHFLRPEVKFDGIDPLVKQM NEDKAKAKHLLSIDFDDDISYNI >gi|224999888|gb|ACJC01000112.1| GENE 30 36019 - 36288 450 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467868|ref|NP_764505.1| 30S ribosomal protein S15 [Staphylococcus epidermidis ATCC 12228] # 1 89 1 89 89 177 100 1e-43 MAISQQRKDELIKEYRVHETDTGSPEVQIAVLTAEITALNEHLREHKKDHHSRRGLLKMV GRRRHLLNYLRSKDIQRYRELIKSLGIRR >gi|224999888|gb|ACJC01000112.1| GENE 31 36420 - 38525 1698 701 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 11 698 10 696 714 658 49 0.0 MSQEKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTATASKEPRDGDFFPLT VNYEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNIVLSA DPDCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGKYVINPSVADKEISRLDLEVA GHKDAVNMVEAGASEITESEMLEAIFFGHEEIKRLVAFQQEIIDHIQPIKQEFVPVERDE DLVEKVKRLTEDKGLKETVLTFDKQQRDENLDVLKEEVVGHFLDEEDPENETLVKEVYAI LNDLIKEEVRRLIADEKIRPDGRKVDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTL GALGDYQLIDGLGPEVEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIP DTQDFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTRDDSYT ILTDIQGMEDALGDMDFKVAGTKDGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDH MLHTIEQPREELSAYAPKVVTMSINPDKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIF IGAVDQAMINRAKEIIEDITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISQ ERINKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLEQSKN >gi|224999888|gb|ACJC01000112.1| GENE 32 38862 - 40568 1918 568 aa, chain + ## HITS:1 COG:SA1118 KEGG:ns NR:ns ## COG: SA1118 COG0595 # Protein_GI_number: 15926858 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Staphylococcus aureus N315 # 12 568 1 557 557 1033 93.0 0 MDGSLFIGGNILSLIKKKNKDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEM LGVDIVIPDIQYVIENKERLKGIFLTHGHEHAIGAVSYVLEQIDAPVYGSKLTIALVKEA MKARNIKKKVRYYTVNHDSIMRFKNVNVSFFNTTHSIPDSLGVCIHTSYGSIVYTGEFKF DQSLHGHYAPDLKRMAEIGDEGVFALISDSTEAEKPGYNTPENIIEHHMYDAFAKVKGRL IVSCYASNFVRIQQVLNIASQLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPINEVE NYPKNEVIIIATGMQGEPVEALSQMARKKHKIMNIEEGDSIFLAITASANMEVIIADTLN ELVRAGAHIIPNNKKIHASSHGCMEELKMMLNIMKPEYFVPVQGEFKMQIAHAKLAAETG VAPEKIFLVEKGDVISYNGKDMILNEKVQSGNILIDGIGVGDVGNIVLRDRHLLAEDGIF IAVVTLDPKNRRIAAGPEIQSRGFVYVRESEELLKEAEEKVRKIVEEGLQEKRIEWSEIK QNMRDQISKLLFESTKRRPMIIPVISEI >gi|224999888|gb|ACJC01000112.1| GENE 33 40835 - 43228 2128 797 aa, chain + ## HITS:1 COG:SA1119 KEGG:ns NR:ns ## COG: SA1119 COG1674 # Protein_GI_number: 15926859 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Staphylococcus aureus N315 # 16 797 19 788 788 1122 76.0 0 MPQAKKRTSTKRKGNKKTNKKKQNETPLRYIFSIIVVILIILGAFQLGIIGRMIDSFFNY LFGMSRYLTYILVLIATIFITYSKQIPRTRRSIGAIVLQLALLFITQLYFHFSHNITSQR EPVLSFVYKAYEQTHFPNFGGGLIGFYLLKLFIPLISIVGVIIITILLLASSFILLLNLR HRDVTKSLFDNLKSSSNHASESIKQKREQNKIKKEEKAQLKEEKIERKKQKKSRQNNNVI KDVSDFPEISQSNDIPIYGHNEQEDKRQNTTNQRQKRVLDNEQFQQSLPSTKNQSINNNQ PSTTAENNQQQSKAEGSISEAGEEANIEYTVPPLSLLKQPTKQKTTSKAEVQRKGQVLES TLKNFGVNAKVTQIKIGPAVTQYEIQPAQGVKVSKIVNLHNDIALALAAKDVRIEAPIPG RSAVGIEVPNDKISLVTLKEVLEDKFPSKYKLEVGIGRDISGDPISIQLNEMPHLLVAGS TGSGKSVCINGIITSILLNTKPHEVKLMLIDPKMVELNVYNGIPHLLIPVVTNPHKASQA LEKIVSEMERRYDLFQHSSTRNIEGYNQYIRKQNEELDEKQSELPYIVVIVDELADLMMV AGKEVENAIQRITQMARAAGIHLIVATQRPSVDVITGIIKNNIPSRIAFAVSSQTDSRTI IGAGGAEKLLGKGDMLYVGNGESTTTRIQGAFLSDQEVQDVVNYVVEQQKANYVKEMEPD APVDKSEMKSEDALYDEAYLFVIEKQKASTSLLQRQFRIGYNRASRLMDDLERNQVIGPQ KGSKPRQILVDLENDEV >gi|224999888|gb|ACJC01000112.1| GENE 34 43231 - 43944 723 237 aa, chain + ## HITS:1 COG:SA1120 KEGG:ns NR:ns ## COG: SA1120 COG2188 # Protein_GI_number: 15926860 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 235 1 235 237 317 69.0 2e-86 MSEMSAIYRVKQYILNLIKDGELTNGSKLPSNLSIARALNVKTDDVYDGIDELITEQVVT DNFEEGTSVKIKPPFYYPLNKIISIGTMIKEAGYEAGTEYLNLDEQPATILDAEHLGIET KEPITIIERLRTANHKPVVYCLDKIAKTYLTCTDYQQSSGSMLEAIKASTNHVIMHAEMD LEAISYEPHISEVLNASPHEGLMLLKVVHYDEKHQPILYSLNYIKSSLVKFTITKSE >gi|224999888|gb|ACJC01000112.1| GENE 35 44064 - 45245 893 393 aa, chain + ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 1 390 29 418 421 499 63.0 1e-141 MAPLNYKTITSRSILSKVLVRATQQWPTDKTLNKQLSELYGAYVNSFVSKFKDRHVITIS LEVVNEKFLKDKTPLFEKGLDTLKEIIWNPLIKDRCFDHTYVAQEKSLLSKKLEAMEDNK AQYSFLQLMNYMFKQEPYRYIATGQLEQIPQVTSESLYDTYLSMIQNDDCAIYVVGNINK EEVTQLILDKFAIKPFYLENRETTEIAPSFDQPQYIIEKDDVDQAKLNLGYRFPSYYGKS NYYAFIILNMMFGGDPSSVLFNEVREKQSLAYSIHSQIDGKNGFLFVLSGVSAEKYEQAK ETVIKEFDKIKNGDFDSNKIELAKKIIISHRHEASDRPKSIIEILHNQLLLNHQQTDQDF INAVNRVTKTDVIKLANEAVLDTIYVLTKGDQH >gi|224999888|gb|ACJC01000112.1| GENE 36 45245 - 46534 1066 429 aa, chain + ## HITS:1 COG:SA1122 KEGG:ns NR:ns ## COG: SA1122 COG0612 # Protein_GI_number: 15926862 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 1 427 1 427 428 635 79.0 0 MKTHQYELIDEKVFEHEFDNGLKLFVIPKPGFQKTYVTYTTQFGSLDNHFKPIGSQQFVE VPDGVAHFLEHKLFEKEDEDLFTAFAEENAQANAFTSFDRTSYLFSATSNIESNIKRLLN MVETPYFTEETVNKEKGIIAEEIKMYQEQPGYKLMFNTLRAMYSKHPIRVDIAGSVESIY EITKDDLYLCYETFYHPSNMVLFVVGDVSPQSIIKLVEKHENQRDKTYQPRIERAQIDEP REVNQRFVSEKMKLQSPRLMLGFKNEPLDESATKFVQRDLEMTFFYELVFGEETEFYQQL LNKDLIDETFGYQFVLEPSYSFSIITSATQQPDLFKQLIMDELRKYKGNLKDQEAFDLLK KQFIGEFISSLNSPEYIANQYAKLYFEGVSVFDMLDIVENITLESVNETSELFLNFDQLV DSRLEMENR >gi|224999888|gb|ACJC01000112.1| GENE 37 46531 - 47235 601 234 aa, chain + ## HITS:1 COG:SA1123 KEGG:ns NR:ns ## COG: SA1123 COG1028 # Protein_GI_number: 15926863 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 313 64.0 2e-85 MKALVIGGSGTIGRAIVKRLLFEGYEVFLHYHSAQYSDLSNQFKNSKITFIQCDLTKDIK LEDYFGHIDELDCLIYTSGTALYGMLQDMSDCDIDNSYALNVRQFIRLTRYFIDILRQSN NGRIIVISSIWGETGASLETIYSAMKSAQIGFVKALSQELALTSVTVNAITPGMVKGKMS DVWSKDELSNIVAELPQQRMIDPSEVAHACAYLCSTMSKSITGTVHKVNGGWYI >gi|224999888|gb|ACJC01000112.1| GENE 38 47389 - 48216 845 275 aa, chain + ## HITS:1 COG:no KEGG:SERP0848 NR:ns ## KEGG: SERP0848 # Name: not_defined # Def: ACT domain-containing protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 261 1 261 275 496 99.0 1e-139 MTFAKRKEWYLEYEITVNRAGLLGDISSLLGMLGISIVTINGVDQGKRGLLIKTDQLEKV ERFEQIVKEINEIEITKLRVPELRDRLAVRHGRYIEQDADDKKTFKFEREDLGLLVDFLA ELFKEEGHKLIGIRGMPRVGKTESIVAGSVCAHKRWLFISSTLIKQTVRRSLFKGEYDSN HVYIIDGAVTARELNPEHQELVREVMTLPSIKVVEHPDLFVESCNYNMEDFDYIIELREN ENQEIRYEEMKKHTVQSKNNLDFGDPFGGGFGFFE >gi|224999888|gb|ACJC01000112.1| GENE 39 48235 - 48627 339 130 aa, chain + ## HITS:1 COG:SA1125 KEGG:ns NR:ns ## COG: SA1125 COG1426 # Protein_GI_number: 15926865 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 129 1 129 130 157 62.0 5e-39 MKTIGEVLKSRRERLGMTLSELEQRTQLKRQTLIHIENNDFNELAKSDYTEGFIRKYAKV VNIEPNQLIEAHQDEIPETQYQIDDVIQTFSNGYEPPYQRQSKEVFQLLMWMGFIILISL IVWILAILII >gi|224999888|gb|ACJC01000112.1| GENE 40 48656 - 49237 276 193 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 188 484 668 904 110 36 2e-23 MNIPNQITVFRVILIPFFILFALVDFGFGQISILGGNHIRIEILISAIIFVVASLSDFAD GYLARKWQLVTNMGKFLDPLADKLLVASALIVMVQLGFTNSVVAIIIIAREFAVTGLRLL QIEQGFVSAAGQLGKIKTAVTMVAIIWILFGDPFMHYVHFPIGVWLLYIGVFFTILSGIE YFYKGRDVFKHSK >gi|224999888|gb|ACJC01000112.1| GENE 41 49685 - 50830 1242 381 aa, chain + ## HITS:1 COG:SA1127 KEGG:ns NR:ns ## COG: SA1127 COG1058 # Protein_GI_number: 15926867 # Func_class: R General function prediction only # Function: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA # Organism: Staphylococcus aureus N315 # 1 379 1 379 383 481 62.0 1e-135 MNISIVAVGSELLLGQIANTNGQYLSKLFNSIGKSVVEHTVIGDNPQRLEYVIKQCLSRF DTIVLTGGLGPTKDDLTKHTVAKVLGKNLVTDEASLNFIKNYFKEQGQDMTSNNKQQALV IEDAIVLPNKHGMAPGMLVELGKQKIILLPGPPKEMQPMAKNELLPYLMDKDEVIFSELL RFAGIGESKLETLLIDLIDEQTNPTIAPLAGTHEVYVRLTANAESKERCQLLIKPIRDEI LNRIGTYYFGSDEVSIEESVINSAKQNFAIYDGVTNGALFTRLKNADSKNLVKGMLPHSN QFIDITCEFNTVLFNAAQYVRDLYQTDLGIVLLNKDNIVYLGIYDGNNFDIETFKMSQSR NLLRSRSQNYAMIRLLNWLNK >gi|224999888|gb|ACJC01000112.1| GENE 42 51001 - 52050 1325 349 aa, chain + ## HITS:1 COG:SA1128 KEGG:ns NR:ns ## COG: SA1128 COG0468 # Protein_GI_number: 15926868 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Staphylococcus aureus N315 # 1 349 1 346 347 608 94.0 1e-174 MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRI IEIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDH GEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGA ISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQG KENVKNYLKENPQIKEEIDRKLREKLGIFDGDVDENENEDDSPKTLFDE >gi|224999888|gb|ACJC01000112.1| GENE 43 52276 - 53835 1925 519 aa, chain + ## HITS:1 COG:SA1129 KEGG:ns NR:ns ## COG: SA1129 COG1418 # Protein_GI_number: 15926869 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Staphylococcus aureus N315 # 21 519 21 519 519 716 93.0 0 MNLLSLLLILLGIILGVVVGYIVARNLLHQKQVQARQTADDIVSYANKEADNIKKEKLLE AKEENQILKEQAENELRERRGELQRQETRLLQKEENLDRKSDLLDKKDEILEQKESKLEE RQQQVDAKESSVQTLIMKHEQELERISGLTQEEAVKEQLQRVEEELSQDIAILVKEKEKE AKEKVDKTAKELLATTVQRLAAEHTTESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEDMVEKARKEVDDIIRD AGEQATFEINVHNMHPDLVKILGRLNYRTSYGQNVLKHSIEVAHLSGMLAAELGEDVTLA KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYNENNIIINAIHSHHGDVEPTSIISILVA AADALSAARPGARKETLENYIRRLERLETLSESYDGVEKAFAIQAGREIRVVVSPEEIDD LKSYRLARDIKNQIEEELQYPGHIKVTVVRETRAIEYAK >gi|224999888|gb|ACJC01000112.1| GENE 44 53924 - 54139 288 71 aa, chain - ## HITS:1 COG:no KEGG:SERP0854 NR:ns ## KEGG: SERP0854 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 71 1 71 71 110 98.0 2e-23 MSINIDPEKFAELVVTSNPAKSDEAEDIAKESLILYINAYRLAEKYANIATNCYDTAEIL KEINEVDLQLK >gi|224999888|gb|ACJC01000112.1| GENE 45 54302 - 55096 981 264 aa, chain + ## HITS:1 COG:SA1130 KEGG:ns NR:ns ## COG: SA1130 COG1692 # Protein_GI_number: 15926871 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 262 1 262 265 451 82.0 1e-127 MRILFIGDIVGKVGRKMMTTYLPKIKQAYHPTVSIVNAENAAHGKGLTEKIYKQLLREGV DFMTMGNHTYGQREIYDFIDDAHRMVRPANFPDEAPGTGMRIIKINDIKLAIINLQGRSF MQDIDDPFKKADQLIEEAQKSTPYIFVDFHAETTSEKNAMGWYLDGRVSAVVGTHTHIQT SDDRILPHGTGYITDVGMTGYYDGILGINRDEVIQRFITSLPQRHVVPDDGRGVLSGVII DLDKEGKTIQIKRLLINEDHPFQI >gi|224999888|gb|ACJC01000112.1| GENE 46 55209 - 56969 1775 586 aa, chain + ## HITS:1 COG:SA1131_2 KEGG:ns NR:ns ## COG: SA1131_2 COG0674 # Protein_GI_number: 15926872 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Staphylococcus aureus N315 # 190 586 2 398 398 620 80.0 1e-177 MKSQISWKVGGQQGEGIESTGEIFATAMNRKGYFLYGYRHFSSRIKGGHTNNKIRVSTSP VHAISDDLDILIAFDQETIELNHHEMREDSIIIADAKAKPQKPENCVAQLIELPFTSTAK ELGTALMKNMVAIGATSALMDLNTSTFETLIDNMFSKKGNKVVDMNIQALNMGYDLMKQQ VTNVNGDFTLENGSGHPHLYMIGNDAIGLGAIAAGSRFMSAYPITPASEIMEYMIANLPK VDGTVVQTEDEIAAATMAIGANYAGVRGFTASAGPGLSLMMESIGLSGMTETPLVIINTQ RGGPSTGLPTKQEQSDLLQMIYGTHGDIPKIVVAPTDAEDAFYLTMEAFNLAEEYQCPVI LLSDLQLSLGKQTVKTLDYNKIDIRRGEIIQSDIERAEDDKAYFKRYALTASGVSPRPIP GVKGGIHHVTGVEHNEEGKPSEAPMNRQNQMEKRMRKTESLVINNPVLLNEHDDKADILY IGFISTKGAIGEGAERLERQGVKVNTMHIRQLHPFPKDIVQQAINKASKVIVAEHNYQGQ LSSILKMNTQVNDKLVNQTKYDGKPFLPYEIEEKGLEIAKELKELV >gi|224999888|gb|ACJC01000112.1| GENE 47 56970 - 57836 904 288 aa, chain + ## HITS:1 COG:SA1132 KEGG:ns NR:ns ## COG: SA1132 COG1013 # Protein_GI_number: 15926873 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Staphylococcus aureus N315 # 1 288 1 288 288 531 90.0 1e-151 MATFKDFRNNVKPNWCPGCGDFSVQAAIQKATANIGLEPEDVAIITGIGCSGRLSGYINS YGVHSIHGRALPLAQGVKMANKDLTVIASGGDGDGYAIGMGHTIHALRRNMNMTYIVMDN QIYGLTKGQTSPSSAKGFVTKSTPKGNIEKNVAPLELALSSGATFVAQGFSSDIKALTKM IEAAIHHDGFSFVNVFSPCVTYNKVNTYDWFKEHLTSIDDIEGYDNTDKQLAMKTVLDHE SLVKGIVYQDTTTPSYESQISELEHEALAKRDIHITEETFNDLTAQFL >gi|224999888|gb|ACJC01000112.1| GENE 48 58448 - 59047 709 199 aa, chain + ## HITS:1 COG:BS_yoqZ KEGG:ns NR:ns ## COG: BS_yoqZ COG4195 # Protein_GI_number: 16079105 # Func_class: R General function prediction only # Function: Phage-related replication protein # Organism: Bacillus subtilis # 25 196 95 262 274 99 35.0 3e-21 MTELKELTKEGKDWEIEFENRSSMVTILAIHGGGIEPATTELAYTIAHRGNYNYFSFKGM RSEGNNELHVTSTHYDDQIALDLVRGSQRTVAIHGCEGNESVAYIGGSDDRLIELITESL EDIGISVQEAPHHISGTQENNIVNMTQTQGGVQLELTAQLRKELFKNRKSSRKNRENKDN WGDLMYDFADAMKKAIERA >gi|224999888|gb|ACJC01000112.1| GENE 49 59104 - 59394 357 96 aa, chain + ## HITS:1 COG:SA1133 KEGG:ns NR:ns ## COG: SA1133 COG0011 # Protein_GI_number: 15926874 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 96 1 96 97 159 88.0 9e-40 MQDTLMSIQIIPKTPNNNDVIPYVDEAIKIIDDSGLHFRVGPLETTVQGEMSECLILIQK LNDRMVELECPSIISQVKFYHVPEGIEIETLTGKYD >gi|224999888|gb|ACJC01000112.1| GENE 50 59737 - 61281 494 514 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 64 505 1 449 449 194 28 1e-48 MNEEQRKAGTINILAERDRKAEKDYSKYFEQVYQPPSLKEAKKRGKQEVQYNRDFHIDEK YKGMGKGRTFLIKTYGCQMNAHDTEVMAGILNALGYSATSDINEADVILINTCAIRENAE NKVFSEIGNLKHLKKERPDCLIGVCGCMSQEESVVNKILKSYQNVDMVFGTHNIHHLPEI LEEAYLSKAMVVEVWSKEGDIIENLPKVRDGHIKAWVNIMYGCDKFCTYCIVPFTRGKER SRRPEDIIDEVRELAREGYQEITLLGQNVNSYGKDIEGLDYELGDLLEDISKIDIPRVRF TTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNQVLKIMGRKYTRESYLDLVSRIKEA IPNVALTTDIIVGYPNETEEQFEETLTLYDDVQFEHAYTYLYSQRDGTPAAKMKDNVPLE VKKERLQRLNKKVGMYSQQAMSQYEGKIVTVLCEGSSKKDESVLAGYTDKNKLVNFKGPR ESIGKLVDVKIDEAKQYSLNGTFIQEHQRSMVTQ >gi|224999888|gb|ACJC01000112.1| GENE 51 61283 - 61648 420 121 aa, chain + ## HITS:1 COG:SA1135 KEGG:ns NR:ns ## COG: SA1135 COG4550 # Protein_GI_number: 15926876 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 121 1 121 121 96 55.0 1e-20 MYSEKEIIRKVESLAEKIGKLEVVQDYHNVEKQIHNNQAIKQKMNRLKAQQKQSVNFQNY GKQNALEQSEAKIQYLKDEINELPIVEEFRSAQYEANDLLQMMVKTMEDRLNEYNKKEHN E >gi|224999888|gb|ACJC01000112.1| GENE 52 61672 - 62166 488 164 aa, chain + ## HITS:1 COG:SA1136 KEGG:ns NR:ns ## COG: SA1136 COG4732 # Protein_GI_number: 15926877 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 163 1 163 163 215 80.0 3e-56 MNIRKLTITAFLIAINVVLSSLIVIPLGPIKAAPVQHFVNVLCAVFVGPWYGLAQAFISS VLRISFGTGSAFAFPGSMIGVLLSSLFYMYRKHIFMASVGEVLGTGVIGSLMCIPLAWFL GLQDFFIKPLMLMFIVSSFIGALISYILLIILKRRGLLDRFNKN >gi|224999888|gb|ACJC01000112.1| GENE 53 62364 - 64985 2614 873 aa, chain + ## HITS:1 COG:SA1137 KEGG:ns NR:ns ## COG: SA1137 COG0249 # Protein_GI_number: 15926878 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Staphylococcus aureus N315 # 1 873 1 872 872 1355 81.0 0 MANITPMMQQYLKIKSEYDDCLLFFRLGDFYEMFFDDAKEASRVLEITLTKRDAKKENPI PMCGVPYHSADNYIETLINNGYKVAICEQMEDPKQTKGMVRREVVRIVTPGTVMDQSGMD EKKNNYILSFIENEEFGLCYCDVSTGELKVTHFKDTATLLNEITTINPNEIVIKQALSEE LKRQINMITETITVREDISDEDYDMNQLTHQLMHDTTQLLLDYIHHTQKRDLSHIEEVIE YAAVDYMKMDYYAKRNLELTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLINKQ QINDRLNIVEEFMDRFIERDTLRNHLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEIP HIKALLNELDAQTTTQFKELEPLDDLLQILEESLVEEPPISIKDGGLFKKGFNTQLDEYL EASKNGKTWLAELQAKERERTGIKSLKISFNKVFGYFIEITRANLNNFQPEAFGYNRKQT LSNAERFITDELKEKEDIILGAEDKAVELEYELFVKLREHIKTYTERLQKQAKIISELDC LQSFAEIAQKYNYVKPTFSDDKVLHLENSRHPVVERVMDHNDYVPNDCHLDDETFIYLIT GPNMSGKSTYMRQVAIISIMAQMGAYVPCDSATLPIFDQIFTRIGAADDLVSGKSTFMVE MLEAQKALTYATENSLIIFDEIGRGTSTYDGLALAQAMIEYVAQTSHAKTLFSTHYHELT SLDQMLNCLKNVHVAANEYQGELIFLHKVKDGAVDDSYGIQVAKLADLPNEVIDRAQVIL NAFEQKPSYQLSHQDTDNQRTVPSYNDFGQIEEEQSVIETHTSNHNYEQATFDLFDGYNQ QSEVECQIRELNLSNMTPLEALIKLNELQSQLK >gi|224999888|gb|ACJC01000112.1| GENE 54 65000 - 66937 1700 645 aa, chain + ## HITS:1 COG:SA1138 KEGG:ns NR:ns ## COG: SA1138 COG0323 # Protein_GI_number: 15926879 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Staphylococcus aureus N315 # 1 645 1 669 669 944 75.0 0 MGKIKELETSLANKIAAGEVVERPSSVVKELLENAIDAQATEINIEVEQSGISAIRVVDN GTGIAQEDLGLVFHRHATSKIVADDDLFHIRTLGFRGEALASISSVAKVTLKTCTDNENG HEIYAEDGKIIHEKPAKAKKGTDIQVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMS HPEIRISLVSDGKKILSTNGSGRTNEVMAEIYGMKVAKDLVHISGDTSDYHLEGFVAKPE HSRSNKHYISIFINGRYIKNFVLNKAILEGYHTLLTIGRFPICYINIQMDPILVDVNVHP TKLEVRLSKEDQLYDLIVTKIREAFKDKILIPQNDLNRTPKKNKVLETFEQQKINFEKKQ SQIGETSAPYVHDQKDKNHDVESHRNNLDSTSSTNNESTEVSNELNNHIDDTYLQSQKEV LFDMEQDTSNEYEILNQQSKDIKGTVSQTPHRRVPYMEIVGQVHGTYIIAQNENGMFMID QHAAQERIKYEYFREKIGEVTNEVQNLLIPLTFHFSKDEQMIIDQYKDELDKVGVHLEHF GGHDYIVNSYPVWFPKVEAEEIIKDMIELVLKHKSVDVKKIREDAAIMMSCKKSIKANHY LKNNEMADLIDQLREAEDPFTCPHGRPIIINFSNYELEKLFKRVM >gi|224999888|gb|ACJC01000112.1| GENE 55 66951 - 67484 564 177 aa, chain + ## HITS:1 COG:SA1139 KEGG:ns NR:ns ## COG: SA1139 COG1954 # Protein_GI_number: 15926880 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Staphylococcus aureus N315 # 1 177 1 177 177 272 80.0 3e-73 MKENILPAIRNMRDLEKLIKTDYKACVVLDMHIGHLKSIMELLKSHSIECYVHIDLIKGL SHDEFACEYIIQQYKPKGIVSTKAKVIKKAKMLNTLTIFRVFIIDSQALTRSIELIKKVE PDYVEVLPGVASKAVSKIQQETSASVIAGGLIDEPSEISEAISNGAKYVTTSYEKLW >gi|224999888|gb|ACJC01000112.1| GENE 56 67408 - 67563 77 51 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNHRKLVKQFPMVLSTLLQVTKNFGNSYTVNENAFKFVNQRIITFSWNEWI >gi|224999888|gb|ACJC01000112.1| GENE 57 67855 - 68679 1027 274 aa, chain + ## HITS:1 COG:SA1140 KEGG:ns NR:ns ## COG: SA1140 COG0580 # Protein_GI_number: 15926882 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Staphylococcus aureus N315 # 1 274 1 272 272 390 81.0 1e-108 MNAYLAEFLGTAILILFGGGVCANVNLKRSAGNGADWIVIAFGWGLAVTMGVYAVGTFSG AHLNPAVTVALAMDGGFSWAQVPGYIVCQMLGGIVGGALVWLMYLPHWKVTEDPAVKLGV FSTAPAIKNYFANFLSEIIGTMALTLGILFIGVNKIADGLNPIIVGSLIIAIGLSLGGTT GYAINPARDLAPRIAHAILPIHGKGKSNWSYAIVPVLGPMAGGMLGAIVYEVFYKQTFNF SCFIGLIVLIFTLILGVILNKISQNKNNDIESIY >gi|224999888|gb|ACJC01000112.1| GENE 58 68833 - 70332 2046 499 aa, chain + ## HITS:1 COG:SA1141 KEGG:ns NR:ns ## COG: SA1141 COG0554 # Protein_GI_number: 15926883 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Staphylococcus aureus N315 # 1 498 1 498 498 891 86.0 0 MEKYILSIDQGTTSSRAILFNKEGEIKGVSQREFKQHFPHPGWVEHDANEIWTSVLSVMA ELLNENNINANQIEGIGITNQRETTVVWDKNTGRPIYHAIVWQSRQTQDICTNLKEQGYE ETFREKTGLLLDPYFAGTKVKWILDHVEGAREKAENGDLLFGTIDSWLVWKLSGRTAHIT DYTNASRTLMFNIYDLKWDDELLELLDIPKQMLPEVKESSEIYGKTIDYHFFGQEVPIAG IAGDQQAALFGQACFDRGDVKNTYGTGGFMLMNTGEEAVKSESGLLTTIAYGLDGKVNYA LEGSIFVSGSAIQWLRDGLRMINSAPQTENYASRVESTEGVYMVPAFVGLGTPYWDSEAR GAIFGLSRGTEKEHFIRATLESLCYQTRDVMEAMSKDSGIEVQNLRVDGGAVKNNFIMQF QADIVNSSVERPEIQETTALGAAYLAGLAVGFWDDKEDIRERWKLQTEFKPEMDEDQRHK LYSGWKKAVKATQVFKLED >gi|224999888|gb|ACJC01000112.1| GENE 59 70509 - 72182 2120 557 aa, chain + ## HITS:1 COG:SA1142 KEGG:ns NR:ns ## COG: SA1142 COG0578 # Protein_GI_number: 15926884 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 556 17 572 573 928 85.0 0 MSLSTLKRDHIKKNLRDTEYDVVIVGGGITGAGIALDASNRGMKVALVEMQDFAQGTSSR STKLVHGGLRYLKQLQVGVVAETGKERAIVYENGPHVTTPEWMLLPMHKGGTFGKFSTSI GLAMYDRLAGVKKSERKKMLSKQETLNKEPLVKRDGLKGGGYYVEYRTDDARLTIEVMKK AAENGAEILNYTKSEHFTYDSNKKVNGIEVLDMIDGETYAIKAKKVINASGPWVDEVRSG DYARNNKQLRLTKGVHVVIDQSKFPLGQAVYFDTEKDGRMIFAIPREGKAYVGTTDTFYD NEKATPLTTQEDRDYLINAINYMFPTVNVKDEDIESTWAGIRPLILEKGKDPSEISRKDE VWEGESGLLTIAGGKLTGYRHMALEIVDLLAKRLKQEYGLKFESCATKYLKISGGDVGGS KNFEHFVEQKVDAAKGFGIDEDVARRLASKYGSNVDQLFNIAQTAPYHDSKLPLEIYVEL VYSIQQEMVYKPTDFLVRRSGKLYFNIQDVLDYKNAVIDVMADMLNYSETQKEAYTKEVE VAIDEARTGNDQPATKA >gi|224999888|gb|ACJC01000112.1| GENE 60 72389 - 73330 859 313 aa, chain + ## HITS:1 COG:SA1143 KEGG:ns NR:ns ## COG: SA1143 COG2267 # Protein_GI_number: 15926885 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Staphylococcus aureus N315 # 6 311 1 304 304 337 51.0 1e-92 MGAYVVSQSHFKITVEDGTMIEVKIDKAKKSTIGIVHLFHGMAEHMDRYQELVEALNTQG YDVVRHNHRGHGKEIDENERGHFNSMNQIVDDAYEIIETLYLEELNVPYIIIGHSMGSII ARLFVEKYPDIAQGLILTGTGMFPKWKGVPIRLAMKIVTFIFGKRRRLKWVNQLLNKTFN KKITQPRTESDWISTRQDEVDKFVEDEFCGFKVSNQLIYQTLKTMMKTAERQQLKRTDKN LPILFISGKDDPFGEYGKGIKHLARLYKRAGIKHITVQLYKHKRHEILFEEDYLKTWQHM FEWMEKQILKKQK >gi|224999888|gb|ACJC01000112.1| GENE 61 73342 - 74340 727 332 aa, chain + ## HITS:1 COG:SA1144 KEGG:ns NR:ns ## COG: SA1144 COG0324 # Protein_GI_number: 15926886 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Staphylococcus aureus N315 # 6 311 5 310 311 459 76.0 1e-129 MTEMTKPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEME GIPHYMIDILPPDASFSAYEFKKRAEKYIKDITGRGKVPIIVGGTGLYIQSLLYNYAFED ESISDDKLKQVKLKLTELEQLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTK KLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVKHLVEQGFEA SQSMQAIGYKELVPVIKGNISMESAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSL QMMLDEITTQINKRSSNHDCKRKHPRPSTREL >gi|224999888|gb|ACJC01000112.1| GENE 62 74294 - 74533 322 79 aa, chain + ## HITS:1 COG:SA1145 KEGG:ns NR:ns ## COG: SA1145 COG1923 # Protein_GI_number: 15926887 # Func_class: R General function prediction only # Function: Uncharacterized host factor I protein # Organism: Staphylococcus aureus N315 # 1 74 1 74 77 99 81.0 2e-21 MIANENIQDQALENFKSEKTEVTIFFLNGFQMKGVVENYDKYVVSLNSQGKQHLIYKHAI STFTVDNESSEATEVNSEE >gi|224999888|gb|ACJC01000112.1| GENE 63 74752 - 75231 524 159 aa, chain - ## HITS:1 COG:SA1146 KEGG:ns NR:ns ## COG: SA1146 COG0386 # Protein_GI_number: 15926888 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 264 80.0 5e-71 MESIYDFVVEKNNGESYKLEQYKGDVMLIVNTASECGFTPQFEGLQKLYDEYKDQGFIIL GFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFRFLTDAAKGMINE KIKWNFTKFLIDREGNVIKRFSPQKKPEQIKSEIEKLLS >gi|224999888|gb|ACJC01000112.1| GENE 64 75336 - 76586 1222 416 aa, chain + ## HITS:1 COG:SA1147 KEGG:ns NR:ns ## COG: SA1147 COG2262 # Protein_GI_number: 15926889 # Func_class: R General function prediction only # Function: GTPases # Organism: Staphylococcus aureus N315 # 4 415 1 412 412 577 77.0 1e-164 MYNVTQHATYETKNNRETAVLIGVHAQTDRQFNFESTMEELDALSQTCQLNVKGQITQNR EQFDHKYYVGKGKIDEIKSFIEFHDIDVVVTNDELTTAQSKTLNDNLGIKIIDRTQLILE IFALRARSREGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRT RMNEIKHQLKTVVDHRERYRNKREQNQVFQIALVGYTNAGKSSWFNVLANEETYEKNILF ATLDPKTRQIQVNEGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKGADILMHVVDASHS EYRTQIDTVNQIINDLEMDHIPQVVIFNKKDLCNEQMDVPVSKSAHVFVSSRDENDKEKV KNLVIQEIKNSLSPYEEIVDSANADRLYFLKQHTLVTELIFDETQASYRIKGFKKL >gi|224999888|gb|ACJC01000112.1| GENE 65 76602 - 77840 1241 412 aa, chain + ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 1 412 1 412 412 682 80.0 0 MQDFSNLVEEVENTLIPYFKKIEKRALFNQEKVLNAFHHVKASESDLHGSTGYGYDDFGR DHLEEIYAHTFKADDALVRPQIISGTHAITLALQSTLKTNDELLYITGSPYDTLLEVIGI NGNGVESLKEYGVRYNEVELRDGRIDIPKVITEIDDNTKVVAIQRSKGYDQRPSITINEI EQAIKSIKEVYPNIIIFVDNCYGEFVEEKEPIEVGADLIAGSLIKNPGGGLAKIGGYIAG RQDLIERCGYRLTAPGIGKEAGASLNSLQEMYQGFFLAPHVVSQSLKGALFTSLLLEKLN MKTSPKYNVYRTDLIQTVQFEMKEQMISFCQSIQHASPINAHFSPEPSYMPGYEDDVIMA AGTFIQGSSIELSADGPIRPPYEAYVQGGLTYEHVKLAVTRAVQDMQDNNLL >gi|224999888|gb|ACJC01000112.1| GENE 66 78320 - 78685 431 121 aa, chain + ## HITS:1 COG:SA1149 KEGG:ns NR:ns ## COG: SA1149 COG0789 # Protein_GI_number: 15926891 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 121 2 122 122 189 85.0 1e-48 MSNDSIRRNMAVFSMSVVSKLTDLSPRQIRYYETHELVMPERTDGNKRLFSMNDLERLLE IKSLIEKGFNIRGIKQIIFDEQGHLTTDEQETRKRMIVDATQKPRSETLPINRGDLSRFI K >gi|224999888|gb|ACJC01000112.1| GENE 67 78704 - 80044 1586 446 aa, chain + ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 1 446 1 446 446 891 94.0 0 MPKRSFTKDDIRKFAEEENVRYLRLQFTDILGTIKNVEVPVSQLEKVLDNEMMFDGSSIE GFVRIEESDMYLHPDLDTWVIFPWTAGQGKVARLICDVFKTDGTPFEGDPRANLKRVLRR MEDMGFTDFNLGPEPEFFLFKLDEKGEPTLELNDDGGYFDLAPTDLGENCRRDIVLELED MGFDIEASHHEVAPGQHEIDFKYADAVTACDNIQTFKLVVKTIARKHNLHATFMPKPLFG VNGSGMHFNVSLFKGKENAFFDPEGDLQLTDTAYQFTAGVLKNARGFTAVCNPIVNSYKR LVPGYEAPCYIAWSGKNRSPLVRVPTSRGLSTRIEVRSVDPAANPYMALAAILEAGLDGI ENKLEVPEAVNQNIYEMNREEREAVGIQDLPSTLYTALKAMRENKSIKNALGNHIYNQFI NSKSIEWDYYRTQVSEWEREQYIKQY >gi|224999888|gb|ACJC01000112.1| GENE 68 80214 - 80858 505 214 aa, chain + ## HITS:1 COG:no KEGG:SAAV_0849 NR:ns ## KEGG: SAAV_0849 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_ED98 # Pathway: not_defined # 24 214 8 197 216 69 26.0 7e-11 MDLYTHIECLLLDILDKTPSIYYSFFTIALGIIIYSIKECIRYFNEKKIHKAKYNLEYIR PILQEAHIKVNKLNQAFIDTYNDIDSYSDLNLELLSKLPENERRKYEKEEIYRIYYNIET NINRLKKACREFIAFMNVNKIYFSNEIFYKVIEIDITVNTNHISLLKSIQKEVVEKKNPN TLKVGISEDYKRNQRDYRFLQDALEQEIEKQLKV Prediction of potential genes in microbial genomes Time: Sun May 29 07:42:36 2011 Seq name: gi|224999887|gb|ACJC01000113.1| Staphylococcus epidermidis W23144 contig00153, whole genome shotgun sequence Length of sequence - 8951 bp Number of predicted genes - 10, with homology - 10 Number of transcription units - 5, operones - 3 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 23 - 706 702 ## SE0994 hypothetical protein 2 1 Op 2 . - CDS 776 - 1801 995 ## COG2008 Threonine aldolase - Prom 1959 - 2018 8.2 3 2 Op 1 . + CDS 2115 - 2312 218 ## SERP0884 hypothetical protein 4 2 Op 2 1/0.000 + CDS 2370 - 3842 1460 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes + Term 3853 - 3890 6.4 + Prom 3861 - 3920 9.1 5 3 Op 1 45/0.000 + CDS 4024 - 4899 375 ## COG1131 ABC-type multidrug transport system, ATPase component + Prom 4917 - 4976 3.4 6 3 Op 2 6/0.000 + CDS 5013 - 5627 359 ## COG0842 ABC-type multidrug transport system, permease component 7 3 Op 3 19/0.000 + CDS 5627 - 6721 931 ## COG4585 Signal transduction histidine kinase 8 3 Op 4 . + CDS 6718 - 7320 533 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain - Term 7315 - 7357 2.1 9 4 Tu 1 . - CDS 7487 - 7696 246 ## SERP0890 hypothetical protein - Prom 7731 - 7790 4.5 + Prom 7753 - 7812 6.5 10 5 Tu 1 . + CDS 7855 - 8376 516 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Term 8623 - 8662 2.1 Predicted protein(s) >gi|224999887|gb|ACJC01000113.1| GENE 1 23 - 706 702 227 aa, chain - ## HITS:1 COG:no KEGG:SE0994 NR:ns ## KEGG: SE0994 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 227 1 227 227 359 92.0 4e-98 MQQERQSWYQKSWFIILTLLFIFPLGLFLMWRYAHWKIWLKLVVSSVYTIGLVLTVLFQV SLLNENKPNQTEHASTMKEKSDINNVKTTRNKNIEKSIHKDKQNSVNLKQNTKDQNNNAN DEVASPTSEQNAAIAQAKSYANSLPISKKSLYKQLTSEYGEKYPADVAQYAVDHISVDYK KNALRLAKSYVKNINISNQALYDQLVSENGEGFTPEEAQYAMNHLDR >gi|224999887|gb|ACJC01000113.1| GENE 2 776 - 1801 995 341 aa, chain - ## HITS:1 COG:SA1154 KEGG:ns NR:ns ## COG: SA1154 COG2008 # Protein_GI_number: 15926897 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Staphylococcus aureus N315 # 1 341 1 341 341 592 81.0 1e-169 MISFENDYLEGAHEKVLNRLVETNRIQAAGYGFDDFSAQAADKIRQRIDCPDATIRFLVG GTQTNQVVINSMLDSYEGVISADTGHVAVHEGGAIEFSGHKVLTIPSQEGKITAQDVENY IETFESDFKKEHMVYPGMVYISHPTEYGTLYTKEELQSLSRVCRRHQIPLFMDGARLGYG LMSNHTNVTIEDVAKYCDVFYIGGTKIGALCGEAIVFTKQNEPKNFTTIIKHHGALLAKG RLTGVQFLELFTDDLYFDISRHAIEMAEKVKKGFIDKGYQVYFDSPTNQQFFILSNDKIE ELKQKVKFAVWEKYDNQHRVVRFATSWATTEENVNQLLKLI >gi|224999887|gb|ACJC01000113.1| GENE 3 2115 - 2312 218 65 aa, chain + ## HITS:1 COG:no KEGG:SERP0884 NR:ns ## KEGG: SERP0884 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 64 1 64 65 99 100.0 3e-20 MQQIKFKTLTEETLESLEKSVNSFLKSQEGNGYKLLNITIKQIEERAFPHNDEDFNAILT LVTEV >gi|224999887|gb|ACJC01000113.1| GENE 4 2370 - 3842 1460 490 aa, chain + ## HITS:1 COG:SA1155 KEGG:ns NR:ns ## COG: SA1155 COG1502 # Protein_GI_number: 15926899 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Staphylococcus aureus N315 # 6 490 21 505 505 770 75.0 0 MNFGFLGTILTILLVLGFITNIVLAFVIIFLERDRRTASSTWAWLFVLFVLPVIGFILYL FLGRTVSKKKMEKNNGDELHAFEDLVQDQIDSFDKHNYGYINDQVIKHRDLIRMLLMKQD AFLTENNKIDLFTDGHKLYEKVLEDIYNAQDYIHLEYYTFELDGLGKRILDALETKLREG LEVKLLYDDVGSKKVRLSKFKHFRALGGEVEAFFPSKVPLINFRMNNRNHRKIIIIDGQI GYIGGFNVGDDYLGLGKLGYWRDTHTRVQGEGIDALQLRFILDWNSQSHRPQFKFDQKYF PKKNGDKGNTAIQIASSGPAFDLHQIEYGYTKMIMSAKKSIYLQSPYFIPDQSYINALKM AANSGVEVNLMIPCKPDHPFVYWATFSNAADLLDSGVNIYTYQNGFIHSKILMIDDEISS IGSANMDFRSFELNFEVNAFIYDEDIAKQLRQAFEKDIEQSKLLTKEEYNKRPLSIKFKE GLAKLISPIL >gi|224999887|gb|ACJC01000113.1| GENE 5 4024 - 4899 375 291 aa, chain + ## HITS:1 COG:SA1156 KEGG:ns NR:ns ## COG: SA1156 COG1131 # Protein_GI_number: 15926900 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 290 1 290 299 254 46.0 1e-67 MIELRHISKSFKKHNVLEDISINIKNNCCTALIGKNGAGKSTLIDIIVGNNHYDSGQIAD KSNLLNKHKMGILFQKTEFPKYIKVCELLHLYQSFYQTFISFHQFKEITQFSDRQMDQFA CNLSGGQQRILDFALALVGKPELLILDEPTSGMDVEMRQHFWNVIEKLKMNNTTILYTSH YIEEVERMADQVMMLDKGKIQLDDAPENIKRNQSYSVIRIPCKYQELINQLKHKYEIKLI KNRYEIKTTDVSDVLQLLKQYHVNFNKIEILKKSLLEVMFSNDMSKGGNYQ >gi|224999887|gb|ACJC01000113.1| GENE 6 5013 - 5627 359 204 aa, chain + ## HITS:1 COG:SA1157 KEGG:ns NR:ns ## COG: SA1157 COG0842 # Protein_GI_number: 15926901 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Staphylococcus aureus N315 # 1 186 40 225 243 197 52.0 9e-51 MPEEAKPKFYKEYMYSMTVFSLMNFCLLSFPLDLIEERNQGWYKRLMVTPLSSFQYYLVK ISKTMCQFLIAIIIIFSVAHFYKDVHMTVFQWIFSALTLWIGVSLFLTLGLIIAQLNDIQ KASSFANLLNITLAILGGLWFPVNTFPDWLQSISKNMPTYNLKLLAIDLAQDKVVNIEAI GYLIVYSIIFLSIALFMNKKGDVS >gi|224999887|gb|ACJC01000113.1| GENE 7 5627 - 6721 931 364 aa, chain + ## HITS:1 COG:SA1158 KEGG:ns NR:ns ## COG: SA1158 COG4585 # Protein_GI_number: 15926902 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 10 363 9 362 363 313 51.0 4e-85 MESRSWGARIGELSTLIYLIFPILAIFVDKRGNLFTYLIVCTIFIISYVTMILFYKHLSD SILYSLLVIHYLGIFYFVYSVNPMNSLFFFYSAFALPFIFNVRVVSKEFITFLIAMISCL ILTYIFNPTFVVPLSAFYLVILIVAVGNFKNRDERIMKAKLDEKNKYINVLIAQQERNRI SQDLHDTLGHVFASLTLKSELAVKLIDTYPEKAKNEMQAINQLSTETLNKVRLIIDDLKI QSFEDEISSLENLLQNANLDFKFNNKSAAKSLNPAKQSILSMIFREAINNVIKHAHATEV KGELEVHEHQIILKIKDNGVGIENENASNLKSIKKRVDYLNGKLIVQSNNGTLIIVEIPR GDLL >gi|224999887|gb|ACJC01000113.1| GENE 8 6718 - 7320 533 200 aa, chain + ## HITS:1 COG:SA1159 KEGG:ns NR:ns ## COG: SA1159 COG2197 # Protein_GI_number: 15926903 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 200 1 200 200 272 70.0 3e-73 MISLVITEDQLMLRKAMVQLIEMHEEMNVLKDFENGVEALEFIENNEPNVAILDIEIPGI TGLEILSYIRKKQLNTRIIIVTTFKRPGYFEKAVANDVDAYVLKERSIDDLIKTIYKVTK GEKEYSPSLMTSLFTESNPLTHKEQVVLREIGNGLSSKEIANKLYLSNGTVRNYTSTIID KMNSDHRFEAWKKANEKGWI >gi|224999887|gb|ACJC01000113.1| GENE 9 7487 - 7696 246 69 aa, chain - ## HITS:1 COG:no KEGG:SERP0890 NR:ns ## KEGG: SERP0890 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 8 69 1 62 62 72 98.0 4e-12 MMLGVKEMDTSNENKITIIAVIVAIIVSVVLQIVFKLPLIVSLVGSVFLGMFVGFIVYLI QSFRRKKKN >gi|224999887|gb|ACJC01000113.1| GENE 10 7855 - 8376 516 173 aa, chain + ## HITS:1 COG:SA1160 KEGG:ns NR:ns ## COG: SA1160 COG1525 # Protein_GI_number: 15926905 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Staphylococcus aureus N315 # 15 173 20 176 177 221 70.0 7e-58 MSSLLVVAMIGILVIIFQFVNHSGPFSGSESQHQSEKSNLNGKDKVYVKRVVDGDTFVAQ KNGEEIKVRLIGVDTPETVKPNTPVQPYGKQASNYTKKYLTHQNVYLEYDKEKTDRYGRT LAYVWLKNGDMFNESLVKKGLAREKYFSPNGKYRDTFVNAQEEAKKRKLNIWS Prediction of potential genes in microbial genomes Time: Sun May 29 07:43:58 2011 Seq name: gi|224999886|gb|ACJC01000114.1| Staphylococcus epidermidis W23144 contig00154, whole genome shotgun sequence Length of sequence - 242364 bp Number of predicted genes - 198, with homology - 198 Number of transcription units - 106, operones - 43 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 68 - 940 734 ## SE1006 hypothetical protein - Prom 1149 - 1208 10.7 + Prom 1180 - 1239 6.6 2 2 Tu 1 . + CDS 1267 - 1866 380 ## SE1007 hypothetical protein + Term 1872 - 1944 3.4 - Term 1861 - 1892 -0.1 3 3 Tu 1 . - CDS 1944 - 3320 1328 ## COG0527 Aspartokinases - Prom 3344 - 3403 7.9 + Prom 3388 - 3447 7.0 4 4 Op 1 11/0.000 + CDS 3509 - 4789 1418 ## COG0460 Homoserine dehydrogenase 5 4 Op 2 19/0.000 + CDS 4795 - 5859 210 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 6 4 Op 3 1/0.906 + CDS 5861 - 6781 731 ## COG0083 Homoserine kinase 7 4 Op 4 . + CDS 6844 - 7650 789 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 7819 - 7865 13.1 - Term 7807 - 7853 9.3 8 5 Tu 1 . - CDS 7971 - 8285 383 ## SERP0901 hypothetical protein - Prom 8311 - 8370 6.6 - Term 8530 - 8587 17.2 9 6 Tu 1 . - CDS 8591 - 10039 1401 ## COG0833 Amino acid transporters - Prom 10204 - 10263 6.5 + Prom 10166 - 10225 7.4 10 7 Op 1 . + CDS 10270 - 11784 1917 ## COG0753 Catalase 11 7 Op 2 . + CDS 11865 - 12023 282 ## PROTEIN SUPPORTED gi|27315480|gb|AAO04614.1|AE016747_111 50S ribosomal protein L33 + Term 12056 - 12099 5.3 + Prom 12094 - 12153 6.9 12 8 Tu 1 . + CDS 12190 - 12459 459 ## PROTEIN SUPPORTED gi|27467936|ref|NP_764573.1| 30S ribosomal protein S14 + Term 12525 - 12575 1.2 + Prom 12505 - 12564 4.7 13 9 Op 1 1/0.906 + CDS 12613 - 13590 862 ## COG0516 IMP dehydrogenase/GMP reductase + Term 13604 - 13651 2.2 + Prom 13595 - 13654 3.4 14 9 Op 2 . + CDS 13688 - 14629 193 ## PROTEIN SUPPORTED gi|163764795|ref|ZP_02171848.1| ribosomal protein L30 - Term 14868 - 14911 8.5 15 10 Tu 1 . - CDS 14981 - 15601 922 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) - Prom 15626 - 15685 5.9 + Prom 15569 - 15628 6.8 16 11 Tu 1 . + CDS 15745 - 15978 325 ## SE1023 hypothetical protein + Term 15996 - 16044 5.2 + Prom 15990 - 16049 9.9 17 12 Op 1 . + CDS 16136 - 16372 313 ## COG4224 Uncharacterized protein conserved in bacteria + Term 16470 - 16512 1.4 + Prom 16513 - 16572 10.0 18 12 Op 2 . + CDS 16604 - 18592 2492 ## COG0021 Transketolase + Term 18623 - 18666 8.2 + Prom 18717 - 18776 6.4 19 13 Tu 1 . + CDS 18799 - 19026 316 ## COG3763 Uncharacterized protein conserved in bacteria + Term 19049 - 19098 -0.8 + Prom 19070 - 19129 6.7 20 14 Tu 1 . + CDS 19239 - 19727 382 ## COG4846 Membrane protein involved in cytochrome C biogenesis + Term 19737 - 19774 4.0 + Prom 19747 - 19806 5.1 21 15 Op 1 28/0.000 + CDS 19835 - 20959 916 ## COG0420 DNA repair exonuclease 22 15 Op 2 . + CDS 20984 - 23992 2447 ## COG0419 ATPase involved in DNA repair + Term 24079 - 24123 1.1 23 16 Tu 1 . - CDS 24111 - 24461 402 ## COG1970 Large-conductance mechanosensitive channel - Prom 24488 - 24547 9.0 + Prom 24453 - 24512 10.7 24 17 Tu 1 . + CDS 24673 - 26313 1914 ## COG1292 Choline-glycine betaine transporter + Term 26333 - 26372 6.0 + Prom 26639 - 26698 11.2 25 18 Tu 1 . + CDS 26731 - 29436 3261 ## COG1048 Aconitase A + Term 29465 - 29519 10.5 + Prom 29464 - 29523 3.6 26 19 Tu 1 . + CDS 29559 - 30026 499 ## COG0824 Predicted thioesterase + Term 30030 - 30068 1.0 - Term 30018 - 30052 0.4 27 20 Tu 1 2/0.281 - CDS 30075 - 30371 365 ## COG4841 Uncharacterized protein conserved in bacteria - Prom 30404 - 30463 8.3 - Term 30551 - 30592 4.1 28 21 Tu 1 . - CDS 30615 - 31223 480 ## COG0344 Predicted membrane protein - Prom 31363 - 31422 7.0 + Prom 31244 - 31303 8.1 29 22 Op 1 24/0.000 + CDS 31433 - 33427 2349 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 30 22 Op 2 1/0.906 + CDS 33424 - 35826 2508 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit + Prom 35833 - 35892 8.5 31 23 Tu 1 . + CDS 36038 - 37495 827 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 + Term 37516 - 37561 8.2 + Prom 37607 - 37666 6.3 32 24 Tu 1 . + CDS 37690 - 38538 730 ## COG3711 Transcriptional antiterminator + Prom 38574 - 38633 7.8 33 25 Tu 1 . + CDS 38685 - 39902 971 ## COG0628 Predicted permease + Term 39915 - 39957 5.0 + Prom 40054 - 40113 7.9 34 26 Tu 1 . + CDS 40151 - 42673 1966 ## COG2898 Uncharacterized conserved protein + Term 42725 - 42765 6.1 - Term 42712 - 42752 6.1 35 27 Tu 1 . - CDS 42876 - 43391 560 ## COG0225 Peptide methionine sulfoxide reductase - Prom 43473 - 43532 9.7 + Prom 43413 - 43472 6.8 36 28 Tu 1 . + CDS 43527 - 44516 880 ## COG1316 Transcriptional regulator + Term 44522 - 44585 21.8 - Term 44513 - 44570 16.3 37 29 Tu 1 . - CDS 44579 - 44764 337 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog - Prom 44918 - 44977 5.8 + Prom 44829 - 44888 7.0 38 30 Tu 1 . + CDS 44908 - 46170 1032 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair + Term 46287 - 46315 -0.9 - Term 46162 - 46194 -1.0 39 31 Tu 1 . - CDS 46244 - 47332 1070 ## COG0287 Prephenate dehydrogenase - Prom 47509 - 47568 7.6 + Prom 47903 - 47962 3.9 40 32 Op 1 35/0.000 + CDS 47993 - 49399 1083 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 41 32 Op 2 13/0.000 + CDS 49396 - 49962 505 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 42 32 Op 3 21/0.000 + CDS 49965 - 50960 990 ## COG0547 Anthranilate phosphoribosyltransferase 43 32 Op 4 9/0.000 + CDS 50964 - 51752 615 ## COG0134 Indole-3-glycerol phosphate synthase 44 32 Op 5 23/0.000 + CDS 51742 - 52365 482 ## COG0135 Phosphoribosylanthranilate isomerase 45 32 Op 6 37/0.000 + CDS 52369 - 53604 1396 ## COG0133 Tryptophan synthase beta chain 46 32 Op 7 . + CDS 53570 - 54301 378 ## PROTEIN SUPPORTED gi|148984260|ref|ZP_01817555.1| ribosomal protein L11 methyltransferase + Prom 54338 - 54397 3.0 47 33 Tu 1 . + CDS 54492 - 55151 870 ## COG0693 Putative intracellular protease/amidase + Term 55166 - 55212 4.0 + Prom 55244 - 55303 7.8 48 34 Op 1 3/0.188 + CDS 55424 - 56677 1080 ## COG2348 Uncharacterized protein involved in methicillin resistance 49 34 Op 2 1/0.906 + CDS 56703 - 57956 1131 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 57980 - 58020 10.0 + Prom 58894 - 58953 8.4 50 35 Op 1 . + CDS 58979 - 59743 902 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 59751 - 59814 5.4 + Prom 59787 - 59846 3.9 51 35 Op 2 . + CDS 59893 - 60819 983 ## COG4607 ABC-type enterochelin transport system, periplasmic component + Term 60862 - 60916 12.5 - Term 60846 - 60907 21.0 52 36 Op 1 44/0.000 - CDS 60949 - 61644 336 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 53 36 Op 2 44/0.000 - CDS 61647 - 62423 264 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 54 36 Op 3 49/0.000 - CDS 62386 - 63240 661 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 55 36 Op 4 . - CDS 63230 - 64231 821 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Prom 64329 - 64388 12.8 - Term 64356 - 64401 1.5 56 37 Tu 1 . - CDS 64410 - 64748 228 ## SERP0954 hypothetical protein - Prom 64881 - 64940 10.1 57 38 Tu 1 . + CDS 64996 - 66807 1663 ## COG1164 Oligoendopeptidase F + Term 66829 - 66876 3.2 - Term 66813 - 66867 8.4 58 39 Op 1 32/0.000 - CDS 66900 - 67547 573 ## COG0704 Phosphate uptake regulator 59 39 Op 2 41/0.000 - CDS 67554 - 68429 292 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 68455 - 68514 6.3 60 39 Op 3 38/0.000 - CDS 68517 - 69422 1047 ## COG0581 ABC-type phosphate transport system, permease component 61 39 Op 4 39/0.000 - CDS 69424 - 70350 936 ## COG0573 ABC-type phosphate transport system, permease component - Prom 70373 - 70432 5.7 - Term 70459 - 70512 10.1 62 39 Op 5 . - CDS 70557 - 71534 1471 ## COG0226 ABC-type phosphate transport system, periplasmic component - Prom 71586 - 71645 10.2 - Term 71907 - 71948 5.2 63 40 Tu 1 . - CDS 72152 - 73048 447 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains - Prom 73144 - 73203 12.8 + Prom 73172 - 73231 6.6 64 41 Tu 1 . + CDS 73259 - 74866 1803 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 74890 - 74933 1.6 65 42 Op 1 13/0.000 + CDS 75445 - 76677 1247 ## COG0527 Aspartokinases 66 42 Op 2 3/0.188 + CDS 76748 - 77737 1118 ## COG0136 Aspartate-semialdehyde dehydrogenase 67 42 Op 3 6/0.000 + CDS 77739 - 78623 800 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 68 42 Op 4 2/0.281 + CDS 78623 - 79345 782 ## COG0289 Dihydrodipicolinate reductase 69 42 Op 5 6/0.000 + CDS 79367 - 80089 1076 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase + Prom 80137 - 80196 6.9 70 42 Op 6 1/0.906 + CDS 80246 - 81397 1174 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 71 42 Op 7 1/0.906 + CDS 81403 - 82476 953 ## COG0787 Alanine racemase 72 42 Op 8 . + CDS 82477 - 83742 1412 ## COG0019 Diaminopimelate decarboxylase + Term 83805 - 83864 17.3 - Term 84428 - 84461 2.3 73 43 Tu 1 . - CDS 84493 - 84693 293 ## COG1278 Cold shock proteins - Prom 84813 - 84872 7.0 - Term 84706 - 84753 4.7 74 44 Tu 1 . - CDS 84874 - 85182 259 ## COG4699 Uncharacterized protein conserved in bacteria - Prom 85387 - 85446 7.2 + Prom 85254 - 85313 7.8 75 45 Tu 1 . + CDS 85341 - 85610 387 ## COG1254 Acylphosphatases + Term 85647 - 85694 0.1 + Prom 85623 - 85682 3.3 76 46 Op 1 4/0.062 + CDS 85758 - 86276 500 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein 77 46 Op 2 . + CDS 86299 - 87429 1059 ## COG3853 Uncharacterized protein involved in tellurite resistance 78 47 Tu 1 . - CDS 87505 - 88848 1394 ## COG1114 Branched-chain amino acid permeases - Prom 88934 - 88993 11.0 79 48 Op 1 4/0.062 - CDS 89035 - 90924 1958 ## COG4548 Nitric oxide reductase activation protein 80 48 Op 2 . - CDS 90937 - 91728 964 ## COG0714 MoxR-like ATPases - Prom 91821 - 91880 4.1 81 49 Op 1 . - CDS 91906 - 92109 320 ## SERP0980 hypothetical protein 82 49 Op 2 . - CDS 92134 - 92943 887 ## COG0346 Lactoylglutathione lyase and related lyases - Prom 93049 - 93108 6.4 + Prom 93058 - 93117 7.7 83 50 Tu 1 . + CDS 93143 - 93316 235 ## SE1095 hypothetical protein + Term 93342 - 93395 4.1 84 51 Tu 1 . - CDS 93448 - 93858 169 ## SERP0983 hypothetical protein - Prom 94075 - 94134 5.6 85 52 Tu 1 . - CDS 94146 - 94976 611 ## COG4152 ABC-type uncharacterized transport system, ATPase component - Prom 95001 - 95060 7.9 - Term 95052 - 95100 8.0 86 53 Op 1 21/0.000 - CDS 95118 - 96380 1862 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 87 53 Op 2 1/0.906 - CDS 96399 - 99203 2815 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes - Prom 99453 - 99512 7.8 88 54 Op 1 40/0.000 - CDS 99615 - 100985 905 ## COG0642 Signal transduction histidine kinase 89 54 Op 2 . - CDS 100982 - 101641 621 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 101794 - 101853 6.2 - Term 102127 - 102188 6.6 90 55 Op 1 . - CDS 102201 - 102968 684 ## COG1349 Transcriptional regulators of sugar metabolism 91 55 Op 2 1/0.906 - CDS 102975 - 104300 932 ## COG0534 Na+-driven multidrug efflux pump 92 55 Op 3 . - CDS 104287 - 105141 1004 ## COG1409 Predicted phosphohydrolases 93 55 Op 4 14/0.000 - CDS 105155 - 106051 793 ## COG0395 ABC-type sugar transport system, permease component 94 55 Op 5 2/0.281 - CDS 106067 - 107755 1928 ## COG1653 ABC-type sugar transport system, periplasmic component 95 55 Op 6 1/0.906 - CDS 107767 - 108723 691 ## COG4209 ABC-type polysaccharide transport system, permease component 96 55 Op 7 . - CDS 108720 - 109811 997 ## COG3839 ABC-type sugar transport systems, ATPase components - Prom 109954 - 110013 8.6 - Term 110069 - 110118 7.1 97 56 Op 1 1/0.906 - CDS 110162 - 110776 447 ## COG0671 Membrane-associated phospholipid phosphatase 98 56 Op 2 1/0.906 - CDS 110789 - 111862 1295 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 99 56 Op 3 1/0.906 - CDS 111880 - 112383 633 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 112403 - 112462 4.0 - Term 112632 - 112683 7.5 100 57 Tu 1 . - CDS 112718 - 114193 1421 ## COG0793 Periplasmic protease - Prom 114398 - 114457 6.9 - Term 114471 - 114508 3.0 101 58 Op 1 1/0.906 - CDS 114538 - 114729 215 ## COG4479 Uncharacterized protein conserved in bacteria 102 58 Op 2 1/0.906 - CDS 114762 - 115262 774 ## COG2190 Phosphotransferase system IIA components 103 58 Op 3 5/0.000 - CDS 115275 - 115703 338 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 104 58 Op 4 1/0.906 - CDS 115696 - 116223 654 ## COG0225 Peptide methionine sulfoxide reductase - Prom 116251 - 116310 4.6 105 59 Op 1 1/0.906 - CDS 116326 - 117174 932 ## COG1307 Uncharacterized protein conserved in bacteria 106 59 Op 2 16/0.000 - CDS 117184 - 117669 342 ## COG0262 Dihydrofolate reductase 107 59 Op 3 . - CDS 117711 - 118667 950 ## COG0207 Thymidylate synthase - Term 118906 - 118945 4.1 108 60 Op 1 36/0.000 - CDS 118989 - 119651 250 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 109 60 Op 2 . - CDS 119667 - 120716 802 ## COG0577 ABC-type antimicrobial peptide transport system, permease component - Prom 120804 - 120863 6.3 - Term 120813 - 120863 7.7 110 61 Op 1 . - CDS 120926 - 121363 654 ## SERP1006 hypothetical protein 111 61 Op 2 . - CDS 121415 - 121675 281 ## SERP1007 hypothetical protein - Prom 121711 - 121770 3.0 + Prom 121856 - 121915 10.3 112 62 Tu 1 . + CDS 122133 - 122837 665 ## COG1738 Uncharacterized conserved protein + Term 123028 - 123074 4.5 + Prom 123060 - 123119 4.7 113 63 Tu 1 . + CDS 123163 - 123558 511 ## COG0328 Ribonuclease HI + Term 123682 - 123722 10.3 - Term 123662 - 123717 13.9 114 64 Tu 1 . - CDS 123731 - 154342 35472 ## SERP1011 cell wall associated fibronectin-binding protein - Prom 154380 - 154439 6.6 - Term 154471 - 154516 5.5 115 65 Op 1 1/0.906 - CDS 154524 - 155402 808 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) 116 65 Op 2 . - CDS 155421 - 158858 2439 ## COG0699 Predicted GTPases (dynamin-related) - Prom 159079 - 159138 10.8 - Term 159119 - 159156 4.2 117 66 Tu 1 . - CDS 159235 - 159873 708 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 159894 - 159953 11.0 - Term 159932 - 159982 12.2 118 67 Tu 1 . - CDS 160041 - 161177 1088 ## COG0116 Predicted N6-adenine-specific DNA methylase - Prom 161242 - 161301 9.4 - Term 161670 - 161706 -0.1 119 68 Op 1 6/0.000 - CDS 161819 - 162157 451 ## COG3599 Cell division initiation protein 120 68 Op 2 . - CDS 162171 - 162737 672 ## COG4474 Uncharacterized protein conserved in bacteria 121 68 Op 3 . - CDS 162749 - 163081 268 ## SERP1018 hypothetical protein - Prom 163177 - 163236 14.8 + Prom 163320 - 163379 8.8 122 69 Op 1 7/0.000 + CDS 163425 - 164051 505 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase 123 69 Op 2 . + CDS 164048 - 166279 2098 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 166295 - 166336 8.2 - Term 166283 - 166324 8.2 124 70 Op 1 . - CDS 166469 - 166801 410 ## SERP1021 hypothetical protein 125 70 Op 2 6/0.000 - CDS 166806 - 167465 503 ## COG0177 Predicted EndoIII-related endonuclease 126 70 Op 3 4/0.062 - CDS 167455 - 168141 600 ## COG3935 Putative primosome component and related proteins - Term 168154 - 168199 6.7 127 70 Op 4 1/0.906 - CDS 168235 - 169527 1598 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases - Prom 169559 - 169618 7.2 128 71 Op 1 1/0.906 - CDS 169648 - 172356 1953 ## COG1199 Rad3-related DNA helicases 129 71 Op 2 4/0.062 - CDS 172381 - 173352 881 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 130 71 Op 3 3/0.188 - CDS 173339 - 174541 945 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 131 71 Op 4 1/0.906 - CDS 174531 - 175673 1014 ## COG0438 Glycosyltransferase 132 71 Op 5 1/0.906 - CDS 175695 - 176012 428 ## COG1694 Predicted pyrophosphatase - Prom 176041 - 176100 9.4 - Term 176124 - 176168 9.4 133 72 Op 1 2/0.281 - CDS 176192 - 176887 729 ## COG2738 Predicted Zn-dependent protease 134 72 Op 2 2/0.281 - CDS 176932 - 177525 366 ## COG4347 Predicted membrane protein 135 72 Op 3 4/0.062 - CDS 177537 - 178100 481 ## COG5582 Uncharacterized conserved protein 136 72 Op 4 3/0.188 - CDS 178114 - 179358 1448 ## COG0457 FOG: TPR repeat 137 72 Op 5 3/0.188 - CDS 179362 - 180663 1270 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 138 72 Op 6 7/0.000 - CDS 180673 - 181737 768 ## COG0337 3-dehydroquinate synthetase 139 72 Op 7 1/0.906 - CDS 181765 - 182931 1444 ## COG0082 Chorismate synthase - Prom 182982 - 183041 7.7 - Term 183331 - 183372 4.1 140 73 Tu 1 . - CDS 183411 - 183881 584 ## COG0105 Nucleoside diphosphate kinase - Prom 183906 - 183965 4.4 - Term 183927 - 183969 5.1 141 74 Op 1 3/0.188 - CDS 184000 - 184959 774 ## COG0142 Geranylgeranyl pyrophosphate synthase 142 74 Op 2 . - CDS 184961 - 185686 423 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 143 74 Op 3 . - CDS 185692 - 186258 472 ## SERP1040 hypothetical protein - Prom 186281 - 186340 10.0 - Term 186477 - 186533 1.0 144 75 Tu 1 . - CDS 186734 - 187006 178 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 - Prom 187036 - 187095 5.7 145 76 Op 1 5/0.000 - CDS 187177 - 188175 1231 ## COG0240 Glycerol-3-phosphate dehydrogenase 146 76 Op 2 3/0.188 - CDS 188196 - 189506 1607 ## COG1160 Predicted GTPases - Prom 189533 - 189592 7.8 147 77 Tu 1 . - CDS 189722 - 190900 1974 ## PROTEIN SUPPORTED gi|242242755|ref|ZP_04797200.1| 30S ribosomal protein S1 - Prom 190921 - 190980 10.1 - Term 191240 - 191274 -0.3 148 78 Tu 1 . - CDS 191384 - 192031 235 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 - Prom 192060 - 192119 7.4 + Prom 192016 - 192075 7.5 149 79 Tu 1 . + CDS 192110 - 193078 850 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D + Term 193243 - 193301 5.2 - Term 193239 - 193278 4.3 150 80 Tu 1 . - CDS 193291 - 194277 1111 ## COG0492 Thioredoxin reductase - Prom 194316 - 194375 8.2 - Term 194350 - 194400 14.5 151 81 Tu 1 . - CDS 194410 - 195864 1858 ## SE1169 elastin binding protein - Prom 195889 - 195948 4.5 152 82 Op 1 4/0.062 - CDS 195999 - 197378 1030 ## COG0514 Superfamily II DNA helicase 153 82 Op 2 . - CDS 197365 - 198303 592 ## COG4955 Uncharacterized protein conserved in bacteria - Prom 198395 - 198454 3.7 + Prom 198334 - 198393 7.8 154 83 Tu 1 . + CDS 198436 - 198684 406 ## COG1141 Ferredoxin + Term 198820 - 198868 11.1 - Term 198996 - 199052 14.1 155 84 Tu 1 . - CDS 199084 - 199623 412 ## COG3601 Predicted membrane protein - Prom 199826 - 199885 9.4 - Term 200081 - 200136 16.7 156 85 Op 1 40/0.000 - CDS 200222 - 201982 1889 ## COG0642 Signal transduction histidine kinase 157 85 Op 2 2/0.281 - CDS 201966 - 202691 975 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 202762 - 202821 5.8 158 86 Op 1 12/0.000 - CDS 202825 - 203562 813 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 159 86 Op 2 21/0.000 - CDS 203555 - 204097 557 ## COG1386 Predicted transcriptional regulator containing the HTH domain 160 86 Op 3 . - CDS 204090 - 204890 685 ## COG1354 Uncharacterized conserved protein - Prom 204911 - 204970 1.6 + Prom 204687 - 204746 7.4 161 87 Tu 1 . + CDS 204919 - 205443 447 ## COG1547 Uncharacterized conserved protein - Term 205425 - 205477 9.1 162 88 Op 1 3/0.188 - CDS 205496 - 206383 717 ## COG4974 Site-specific recombinase XerD 163 88 Op 2 1/0.906 - CDS 206426 - 206875 330 ## COG0735 Fe2+/Zn2+ uptake regulation proteins - Prom 206902 - 206961 4.8 164 89 Tu 1 . - CDS 206980 - 207522 643 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 207671 - 207730 8.2 + Prom 207514 - 207573 5.5 165 90 Tu 1 . + CDS 207605 - 208513 1043 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) 166 91 Tu 1 . - CDS 208726 - 209484 512 ## COG0300 Short-chain dehydrogenases of various substrate specificities - Prom 209708 - 209767 10.2 + Prom 209524 - 209583 6.7 167 92 Tu 1 . + CDS 209646 - 210461 937 ## COG0345 Pyrroline-5-carboxylate reductase + Term 210469 - 210517 4.1 - Term 210457 - 210505 4.1 168 93 Tu 1 . - CDS 210511 - 211431 814 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III - Prom 211656 - 211715 11.4 + Prom 211776 - 211835 8.6 169 94 Tu 1 . + CDS 211856 - 213340 1198 ## COG0364 Glucose-6-phosphate 1-dehydrogenase + Term 213411 - 213452 2.2 + Prom 213427 - 213486 8.7 170 95 Tu 1 . + CDS 213671 - 214423 730 ## COG2207 AraC-type DNA-binding domain-containing proteins + Term 214585 - 214643 17.3 - Term 214582 - 214622 5.1 171 96 Tu 1 . - CDS 214658 - 216313 1467 ## COG0366 Glycosidases - Prom 216344 - 216403 7.6 - Term 216426 - 216475 6.1 172 97 Op 1 2/0.281 - CDS 216483 - 217889 1597 ## COG0362 6-phosphogluconate dehydrogenase 173 97 Op 2 1/0.906 - CDS 217969 - 219093 1266 ## COG2195 Di- and tripeptidases - Prom 219222 - 219281 11.2 - Term 219414 - 219464 6.1 174 98 Op 1 . - CDS 219470 - 220447 677 ## COG4129 Predicted membrane protein 175 98 Op 2 . - CDS 220460 - 220897 495 ## SE1195 hypothetical protein - Prom 220931 - 220990 7.8 - Term 221015 - 221058 9.4 176 99 Op 1 24/0.000 - CDS 221102 - 222409 1436 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 177 99 Op 2 28/0.000 - CDS 222434 - 223417 1007 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 178 99 Op 3 5/0.000 - CDS 223410 - 224408 966 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 179 99 Op 4 1/0.906 - CDS 224423 - 225844 705 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 - Prom 226016 - 226075 7.3 - Term 225858 - 225905 5.2 180 100 Op 1 8/0.000 - CDS 226107 - 227783 1604 ## COG0497 ATPase involved in DNA repair 181 100 Op 2 1/0.906 - CDS 227799 - 228251 304 ## COG1438 Arginine repressor - Prom 228392 - 228451 10.3 - Term 228458 - 228501 3.5 182 101 Op 1 22/0.000 - CDS 228569 - 229450 938 ## COG0142 Geranylgeranyl pyrophosphate synthase 183 101 Op 2 14/0.000 - CDS 229428 - 229658 339 ## COG1722 Exonuclease VII small subunit 184 101 Op 3 1/0.906 - CDS 229651 - 230988 903 ## COG1570 Exonuclease VII, large subunit 185 101 Op 4 10/0.000 - CDS 231003 - 231392 573 ## COG0781 Transcription termination factor - Term 231408 - 231458 8.1 186 101 Op 5 4/0.062 - CDS 231469 - 231831 467 ## COG1302 Uncharacterized protein conserved in bacteria 187 101 Op 6 27/0.000 - CDS 231843 - 233201 1415 ## COG0439 Biotin carboxylase 188 101 Op 7 . - CDS 233201 - 233674 586 ## COG0511 Biotin carboxyl carrier protein - Prom 233778 - 233837 8.9 189 102 Op 1 13/0.000 - CDS 233933 - 235060 1103 ## COG4992 Ornithine/acetylornithine aminotransferase 190 102 Op 2 10/0.000 - CDS 235063 - 235800 622 ## COG0548 Acetylglutamate kinase 191 102 Op 3 11/0.000 - CDS 235810 - 237003 1063 ## COG1364 N-acetylglutamate synthase (N-acetylornithine aminotransferase) 192 102 Op 4 . - CDS 237021 - 238046 748 ## COG0002 Acetylglutamate semialdehyde dehydrogenase - Prom 238113 - 238172 13.0 - Term 238130 - 238179 10.6 193 103 Op 1 10/0.000 - CDS 238196 - 238753 763 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) 194 103 Op 2 . - CDS 238780 - 239841 1061 ## COG0006 Xaa-Pro aminopeptidase - Prom 239869 - 239928 6.1 195 104 Op 1 . + CDS 239944 - 240522 666 ## SERP1095 putative lipoprotein 196 104 Op 2 . + CDS 240536 - 240754 248 ## SAB1404 hypothetical protein - Term 240732 - 240787 16.4 197 105 Tu 1 . - CDS 240795 - 241625 1014 ## COG0095 Lipoate-protein ligase A - Prom 241745 - 241804 8.3 + Prom 241701 - 241760 10.8 198 106 Tu 1 . + CDS 241785 - 242171 507 ## COG0607 Rhodanese-related sulfurtransferase + Term 242203 - 242253 5.2 Predicted protein(s) >gi|224999886|gb|ACJC01000114.1| GENE 1 68 - 940 734 290 aa, chain - ## HITS:1 COG:no KEGG:SE1006 NR:ns ## KEGG: SE1006 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 16 290 16 290 290 499 98.0 1e-140 MSLTIILSIIIIILIMAMVLNQKFMKDRIETEEYARNQLISKNSTLSEENLSLKNQMLST NNDVGQHAFKNAKRELRKILNRFKEEGRLRSFTIVPTSNLAVKHPLFEYARSFDFIIITD VGLINVDVKNWNQKTFYHFDVPDQHLEEGQPQYNTEKVVGHYISNRYHSQFKTTRSGVYT FIEILQDNRVIYEFYDHDPYDKAANNAKALKDKIENDYNFKIQSIGVIYFSDGSVNIIEG SDESDKYVDTVSTPISLEKVIEDAIDLSKHPLTDKQIEEISESFKQHMNN >gi|224999886|gb|ACJC01000114.1| GENE 2 1267 - 1866 380 199 aa, chain + ## HITS:1 COG:no KEGG:SE1007 NR:ns ## KEGG: SE1007 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 199 1 199 199 343 96.0 2e-93 MYVKEEKPVNKIVEILRKTSSHLFKFHGEVAMHLFLNDDFILPSKVDICVERKKLLEIIR VIPEEFTIHYYDEQLNERLRESLSLSDVEHVKIFKNDTEVMTIFVYDVVNDEWLFRLDHH IRLPKNNIYFHSLSWNVDYIKPEIVLMYDLMSEQKYHQFSNYKAVIDSLSYYQFYILKLV VGEQRIKKAIVNSSAKKIS >gi|224999886|gb|ACJC01000114.1| GENE 3 1944 - 3320 1328 458 aa, chain - ## HITS:1 COG:SA1163 KEGG:ns NR:ns ## COG: SA1163 COG0527 # Protein_GI_number: 15926908 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Staphylococcus aureus N315 # 1 457 1 457 460 734 81.0 0 MKVAKFGGSSVSTAEQIKKVLTIVNEDPERKIIIVSAPGKRHNDDIKTTDLLIRLYEKVL NKLNYESKKQEIIQRYADIVEELGIGNDILITINDTLEEYIKDLSDKPNRLYDALLSCGE NFNAQLIAQYNNSQGIPTRYISPKEAGLTVTDLPQQAQILDSAYNDIYKLRDYDEKLIIP GFFGVSKQNYIVTFPRGGSDITGAIIARGVRASLYENFTDVSGIYKANPNIINNPELIEE ITYREMRELSYAGFGVFHDEALQPLYKDRIPVVIKNTNRPNDKGTYILHDREIDSKNVIS GISCDKGFTVINIKKYLMNRLVGFTRKILGVLEEFNISFDHMPSGIDNISIIMRTNQIQG KESQVLNAIRKRCEVDELSIDHDLAVLMIVGEGMSQVVGTASKITHALSESNINLIMINQ GASEISMMFGIHEADAEKAVLSTYEFCYNGVCLKNLCK >gi|224999886|gb|ACJC01000114.1| GENE 4 3509 - 4789 1418 426 aa, chain + ## HITS:1 COG:SA1164 KEGG:ns NR:ns ## COG: SA1164 COG0460 # Protein_GI_number: 15926909 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 426 1 426 426 657 81.0 0 MKELNIALLGLGTVGSGVVKIIEENRQQIKDTINKDIVIKHILVRDKSKKRPLNISQYHL TEDINDILNDNSIDIVVEVMGGIEPTVDWLRTALKNKKHVITANKDLLAIHLKLLEDLAE ENGVALKFEASVAGGIPIVNAINNGLNANNISKFMGIFNGTSNFILSKMTHEQTTFKDAL EEAQRLGFAEADPTDDVEGVDAARKVVITSYLSFNQVIKLNDVKLVGISDITLADINAAS ALNYKIKLIGKGTYENGYVNASVEPTLIHKNHQLAAVENEYNAIYVIGDAVGDTMFYGKG AGSLATGSAVVSDLLNVALFFESNLHTLPPHFELKTEETKEMMDGAEPVVIQEKSNYYIV ISHSHKSLEKVEYDIKKKLPFHKSLQLVERDQDTYAIIVTGIETSPEKVLNQSGFNVKKV YPVEGV >gi|224999886|gb|ACJC01000114.1| GENE 5 4795 - 5859 210 354 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 29 329 12 303 308 85 27 2e-15 MKRWQGLVKEFKEYLPVNQSTPALTLNEGHTPLIYCENLSQKLDIQLYVKYEGANPTGSF KDRGMVMAVTKAKEQGKKVVICASTGNTSASAAAYAARAGLKAIVVIPEGKIALGKLSQA VMYGAEIVSIEGNFDEALEIVKEIAEENDEIELVNSVNPFRIEGQKTGAFEIVEQLDGQA PDILAIPVGNAGNITAYWQGFVEYHNKKNTQLPQMFGFQAEGASPIVQNKIIKNPETIAT AIRIGNPASWQKAVNALDESNGLIDSVTDEEILEAYQLMTTKEGVFSEPASNASIAGLIK LHRSGKLPKGKKIVAILTGNGLKDPDTAISLLDNPIQPLPNNKESIIRYIKGAI >gi|224999886|gb|ACJC01000114.1| GENE 6 5861 - 6781 731 306 aa, chain + ## HITS:1 COG:SA1166 KEGG:ns NR:ns ## COG: SA1166 COG0083 # Protein_GI_number: 15926911 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Staphylococcus aureus N315 # 1 303 1 303 304 424 67.0 1e-119 MEEVLKLKIPASTANLGVGFDSIGMALDKYLHMSIRKIEKSNWDFQYYSSELEGLPKDDN NYIYQTAVNVARKYNVTLPNLQIEMRSDIPLARGLGSSASALVGALFIANYFGNIQLSKY ELLQLATEIEGHPDNVAPTIYGGLIAGFYNPITKITDVARIEIPHVDIILTIPPYELRTE DSRRVLPDTFSHKGAVQNSAISNTMICALIQHKYKLAGKMMEQDGFHEPYRQHLIPEFNQ VRQLSRQHDAYATVISGAGPTILTLCPKEKSGKLVRTLREKINNCASELVTINEMGVKEE VVYLKS >gi|224999886|gb|ACJC01000114.1| GENE 7 6844 - 7650 789 268 aa, chain + ## HITS:1 COG:SA1167 KEGG:ns NR:ns ## COG: SA1167 COG0561 # Protein_GI_number: 15926912 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 267 1 267 267 369 70.0 1e-102 MTQYKMVVLDMDDTLMNSDNKLSIETKSYLLDIQKRGYYVVLASGRPTEGMLPTARDLEL NKYNSFIISYNGGKTINMANENVEVDQPVSKENFDNIVDYCRDKNFLVLTYDNGYIIHDS SHEYMNIESQLTGLTMNRVADLKEYINHSVPKVMGVDYVSHITEARIELDGNFNKDIDVT TSKPFFLEFMAKNVSKGNAIKALCKRLQIPLEEVIVFGDSLNDKSMFEVAGYSVAMGNAS DELKKIADEVTLDNNSNGIPYALKEILV >gi|224999886|gb|ACJC01000114.1| GENE 8 7971 - 8285 383 104 aa, chain - ## HITS:1 COG:no KEGG:SERP0901 NR:ns ## KEGG: SERP0901 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 104 1 104 104 195 99.0 5e-49 MVGQTNLFDDVIKKEERFVIVVQALEEKNGKLLKRTLREYPSLEHTQMNDLFSHLKEVFL EEPFGVNQSAYSITVYTNLDYAADQVYAHVKRFKGKHDWTHTAK >gi|224999886|gb|ACJC01000114.1| GENE 9 8591 - 10039 1401 482 aa, chain - ## HITS:1 COG:SA1169 KEGG:ns NR:ns ## COG: SA1169 COG0833 # Protein_GI_number: 15926914 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 482 1 482 484 701 80.0 0 MEDNNMKRGLNSRHISMIAIGGAIGTGLFVATGSVISQAGPGGAILAYILIGIMLYFLMS SIGELATFYPVSGSFSSYSTRFVDSSLGFTMGWLYWGMWSLVTSVDIIVASNVLQYWDVF KVLNPLTWSLIFLTLLFLINIFSVKAFGETEFWLSLIKVITIIVFIIFGIMMIFGILGGH TYGFENYTKGQAPFVGGISGILSVLLVAGFSVGGTEVVAVTAGESNNPEKSMPKAIKQVF WRILLFYVLSIAVIAAIIPYTDPLLLNESESVSQSPFTIVFDRIGIAFAASVINAVILTS LLSAANSGIYTTSRMLFSLSADKQAPKFFGKLNDKTKLPMRALITTYIIIVLVIVYANFN ANAVFNLLNIIGSMVIVVWGSSIWSQIRLRQAIKKQGKNPDKLLPYKAPFYPVGPIIVLF TLLFLLLGSSFGSIASGDILGVIRNFTPLFILAIIYIAHKLIKRTHFVKLEEIDLTPHNY KN >gi|224999886|gb|ACJC01000114.1| GENE 10 10270 - 11784 1917 504 aa, chain + ## HITS:1 COG:SA1170 KEGG:ns NR:ns ## COG: SA1170 COG0753 # Protein_GI_number: 15926915 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Staphylococcus aureus N315 # 1 504 3 506 507 909 87.0 0 MSKQDGKLTGLFGAPVSDRENSMTAGQRGPLLMQDVYYLEQMSHFDREVIPERRMHAKGS GAFGTFTVTNDITQYTNAKIFSEVGKQTEMFARFSTVSGERGAADLERDIRGFALKFYTE DGNWDLVGNNTPVFFFRDPKLFISLNRAVKRDPRTNMRSAQNNWDFWTGLPEALHQVTIL MSDRGMPKGFRNMHGFGSHTYSMYNDKGERVWVKYHFRTQQGIENYTDEEAAKIVGMDRD SSQRDLYNAIENGDYPKWKMYIQVMTEKQAKNHPDNPFDLTKVWYKKDYPLIEVGEFELN RNPENYFLDVEQAAFAPTNIVPGLDYSPDKMLQGRLFSYGDAQRYRLGVNHWQIPVNQPK GVGVENLCPFSRDGQMRFLDNNQGGGPHYYPNNQGIYESQPEHKKPPFPTDGDGYEYNYR QDDDNYFEQPGKLFRLQSEDAKERIFTNTANAMDGVSKDVKVRHIRHCYKADPEYGKGVA KALDFDINQIDLETNQDETYENFK >gi|224999886|gb|ACJC01000114.1| GENE 11 11865 - 12023 282 52 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27315480|gb|AAO04614.1|AE016747_111 50S ribosomal protein L33 [Staphylococcus epidermidis ATCC 12228] # 1 52 1 52 52 113 98 9e-24 MFNVRVNITLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK >gi|224999886|gb|ACJC01000114.1| GENE 12 12190 - 12459 459 89 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27467936|ref|NP_764573.1| 30S ribosomal protein S14 [Staphylococcus epidermidis ATCC 12228] # 1 89 1 89 89 181 100 3e-44 MAKKSKIAKEQKRQELVNKYYELRKELKAKGDYEALRKLPRDSSPTRLTRRCKVTGRPRG VLRKFEMSRIAFREHAHKGQIPGVKKSSW >gi|224999886|gb|ACJC01000114.1| GENE 13 12613 - 13590 862 325 aa, chain + ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 1 325 1 325 325 606 89.0 1e-173 MKIFDYEDIQLIPNKCIVESRSECNTSVKFGPRTFKLPVVPANMQTVMNEELAQWFAEND YFYIMHRFNEENRIPFIKKMHHEGLFASISVGVKENEFNFIEKLASSSLIPEYITIDIAH GHSNSVINMIKHIKKHLPNSFVIAGNVGTPEGVRELENAGADATKVGIGPGRVCITKIKT GFGTGGWQLSALNLCNKAARKPIIADGGLRTHGDIAKSIRFGASMVMIGSLFAAHEESPG ETVELDGKKYKEYFGSASEYQKGEHKNVEGKKMFVEHKGSLKDTLTEMEQDLQSSISYAG GKDLKSLRTVDYVIVRNSIFNGDRD >gi|224999886|gb|ACJC01000114.1| GENE 14 13688 - 14629 193 313 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764795|ref|ZP_02171848.1| ribosomal protein L30 [Bacillus selenitireducens MLS10] # 196 311 222 332 336 79 38 2e-13 MIKAQNDIRHQINRWIDSDSNDDNTQLAIPKKQEFAINNIQMNMTRKDVEAQLGRHKRMT SSVYGTNWYTYYSNDYNQFLMVSYINNHVNALYTNQNLISSKSQIKYDTPKDVVRERYGS PIQVIKKGKVGFDVKSNEYDVFHKDHIYTTVFYDKHRDNGVKSLLQVSEKMENRLRYQYG RPSKLLAKSFELQNFDIVNAERKQHGLKTLDYSKDVSHTARKHSIDMVKHNYFDHVNEKK LSPFDRLKKDGIEFKAAGENLAYGQLNSIYAHEGLMNSLGHRKNILNTHFDYLGVGVYFN DRRQPFWTENYTS >gi|224999886|gb|ACJC01000114.1| GENE 15 14981 - 15601 922 206 aa, chain - ## HITS:1 COG:SA1174 KEGG:ns NR:ns ## COG: SA1174 COG1974 # Protein_GI_number: 15926920 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Staphylococcus aureus N315 # 1 206 1 207 207 352 93.0 2e-97 MRELTKRQSEIYDYIKKIVQTKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP TKPRAIEIVSEQLDEVNVEETIHVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDI FILNVVGESMIEAGILDGDKVIVRSQTIAENGDIIVAMTEDEEATVKRFYKEKNRYRLQP ENSTMEPIYLDNVIVIGKVIGLYREM >gi|224999886|gb|ACJC01000114.1| GENE 16 15745 - 15978 325 77 aa, chain + ## HITS:1 COG:no KEGG:SE1023 NR:ns ## KEGG: SE1023 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 77 1 77 77 115 94.0 5e-25 MILKYKYKFLTYMAIVIVSCIVFLTFFLSVNQGAQSEQTYEMTDHKIHQHNQKGTTQNYK DKQNSEQNDQSVFALVN >gi|224999886|gb|ACJC01000114.1| GENE 17 16136 - 16372 313 78 aa, chain + ## HITS:1 COG:SA1176 KEGG:ns NR:ns ## COG: SA1176 COG4224 # Protein_GI_number: 15926922 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 78 1 78 79 69 79.0 2e-12 MSKENLNIDRINELARKKKEQGLTNEEAKEQTKLRKQYLEEFRKGFKQQIENTKVIDPEG NDVTPEKLKKIQEENHNK >gi|224999886|gb|ACJC01000114.1| GENE 18 16604 - 18592 2492 662 aa, chain + ## HITS:1 COG:SA1177 KEGG:ns NR:ns ## COG: SA1177 COG0021 # Protein_GI_number: 15926923 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Staphylococcus aureus N315 # 1 662 1 662 662 1142 84.0 0 MFNEKDQLAIDTIRALSIDAIEKANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDFFNRD RFILSAGHGSALLYSLLHVSGSLELEELKQFRQWGSKTPGHPEYRHTDGVEVTTGPLGQG FAMSVGMALAESHLAGKFNRDQFNIVDHYTYVLASDGDLMEGISHEAASFAGHNQLDKLI VLYDSNDISLDGDLDKSFSEDTKQRFEAYGWNYILVENGNDLDEIDNAITQAKSQQGPTI IEVKTIIGFGSPNKAGSNGVHGAPLGEEERALTFKEYGLDPEKRFNVPEDVYEIFKSTML KRANENEEAWNNMLKNYSEAYPELAEEFKLAMSGKLPNHYANALPEYDLNHSGASRADSG EIIQKLSEFVPSFFGGSADLAGSNKSNVKEAKDYNKDTPEGKNVWFGVREFAMGAAVNGM AAHGGLHPYAATFFVFSDYLKPALRLSSIMGLNSTFIFTHDSIAVGEDGPTHEPIEQLAG LRAIPNMNVIRPADGNETRVAWEVALESEQTPTSLVLTRQNLPTLDVDKQTVENGVRKGA YIVFETEQQLEYLLLASGSEVNLAVEAAKELEQQGKGVRVISMPNWYAFEQQSSEYKESI LPSDVTKRIAIEMASPLGWHKYVGIEGKVIGIDSFGASAPGDLVVEKYGFTKENILKQVR SL >gi|224999886|gb|ACJC01000114.1| GENE 19 18799 - 19026 316 75 aa, chain + ## HITS:1 COG:SA1178 KEGG:ns NR:ns ## COG: SA1178 COG3763 # Protein_GI_number: 15926924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 75 1 75 80 84 89.0 5e-17 MAIWVAIILIVIALIAGLIGGFLLARKYMKDYLKKNPPINEEMLRMMMMQMGQKPSQKKI NQMMTMMNKNMNQKM >gi|224999886|gb|ACJC01000114.1| GENE 20 19239 - 19727 382 162 aa, chain + ## HITS:1 COG:SA1179 KEGG:ns NR:ns ## COG: SA1179 COG4846 # Protein_GI_number: 15926925 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protein involved in cytochrome C biogenesis # Organism: Staphylococcus aureus N315 # 8 149 1 142 155 198 81.0 3e-51 MSKEGVNLAYLVFSIVFAFLMGAVVIVIRMKAQQFPVNEKKIILPPFFMATGALMYVVPY FRLTGMEMLESLILGVLFSTVLIWTSRFEVKDDNIYMKRSKAFPIILISLLIIRTVIKIF ISSEIDPGEIAGMFFLLAFCMIVPWRCAMLYKYKKLQKNLIK >gi|224999886|gb|ACJC01000114.1| GENE 21 19835 - 20959 916 374 aa, chain + ## HITS:1 COG:SA1180 KEGG:ns NR:ns ## COG: SA1180 COG0420 # Protein_GI_number: 15926926 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Staphylococcus aureus N315 # 1 373 1 372 373 478 65.0 1e-135 MKIVHTADWHLGKILNGKQLLEDQKYILTQFKQHMEKEQPDLIVIAGDLYDTSYPSKEAI GLLEETIEYLNIELEIPIIMISGNHDGRERLNYGAKWFENNQLYIRTQLENIDDPIELSG VQFFTLPFATVSEMQNYFKDKQIETYQQALNECLEQMSSSIDNNKVNILIGHLTIEGGKT SDSERPLTIGTVESVDMHSFRLFDYVMLGHLHHPFSINNSFIKYSGSILQYSFSEVTQSK GYRVLDIENNQILNETFVPLKPLRELEVIEGDYEDIIQERIKVKNKNNYFHFKLTNVSHV TDPMTKLKQIYPNILALSNVAFEHSENFSHAEIKKQDDQTIIENFYENMTDQHLSQVQSD KIKHLLSFILDREG >gi|224999886|gb|ACJC01000114.1| GENE 22 20984 - 23992 2447 1002 aa, chain + ## HITS:1 COG:SA1181 KEGG:ns NR:ns ## COG: SA1181 COG0419 # Protein_GI_number: 15926927 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 1002 8 1009 1009 663 43.0 0 MENFGPFIKETIDFEQVETDQLFLISGKTGSGKTMIFDAIVYALYGMASTKTRKEGDLRS HFADGKSPMSVIYQFKVNNQTFKIHREAPFIKEGNITKTQAKLNIYELVDNQFELRESKV NQGNQFIVQLLGVNAEQFRQLFILPQGEFKKFLQSNSKDKQSILRTLFNSERFDEIRHLL VENVKQEKVQIENRYTQIENLWNDIDTFNNDELALYKELESSQTDKMIEKFPQFNDYGYK ILKSFEDAKIKITKELDDLNHKYKVNVELSENTKKLKAETIKFDELKKEQNYIDKLNQEL KMIQESKVLITYFTRLQSLKKGKDELESLHEQSKLNETNYCNEIKDFQKQLEHLSTRENE ITQFNQYLEKNQVFFNQLDMIISSYQQKPVIEEEIKRLYSEYNDLITKKEKLTKELNDKN KDFAIIEHYTEEIYNLKKIIDEYERQKKDEKLFDKLQQDKSSYLSKLNEKKEQLNEIESS IINIDATLIDLNDKKDFVNEIKSALSVGDTCPICGNEIHSLGEHIDFELIAQKNNKIKQF ESKKVKIRDEIIKIETRIEELNHREKELNFEKQEQKDISELQKQLNHLKQLKDEQQSINK LVENFEKQEKEIVNKIHQFDLDLSRKNTQKEKLEIQINDFERHSQFSSVKDFEAYYSHAK KQVENYEYDKEKTKNKLNELNNKLKIEMNDQKHLTENLTQTSKEINNLELKMEKEMQQLG FESYDQVKSAADLSAQKDEIEREISIYNKNYQSFEIEINRLNELVKGKKLLNLEDLRQSI EKTNLKLDETNSQIATISYKIDNNSNKFNNIKNIIQILDDELKVQKEIFLLSEILAGKND YKLTLENYVLIYYLEKIIFQANQRLSFMSGNRYQLIRREAISLGLSGLEIDVFDFHSNKS RHISSLSGGETFQASLALALGLSEVVQQESGGITLDSMFIDEGFGTLDQETLETAIDTLI NLKSSGRMVGIISHVSELKQRIPLILEVTSNQYESHTQFRKN >gi|224999886|gb|ACJC01000114.1| GENE 23 24111 - 24461 402 116 aa, chain - ## HITS:1 COG:SA1182 KEGG:ns NR:ns ## COG: SA1182 COG1970 # Protein_GI_number: 15926928 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Staphylococcus aureus N315 # 1 116 1 118 120 145 84.0 1e-35 MLKEFKEFALKGNVLDLAIAVVMGAAFNKIVTSLVQYIIMPLIGKLFGSVDFAEDWSFWG IKYGLFIQSIIDFIIIAFALFIFVKIANTVMKKEEKEEEVEENTVLLTEIRDLLKK >gi|224999886|gb|ACJC01000114.1| GENE 24 24673 - 26313 1914 546 aa, chain + ## HITS:1 COG:SA1183 KEGG:ns NR:ns ## COG: SA1183 COG1292 # Protein_GI_number: 15926929 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Staphylococcus aureus N315 # 1 546 1 547 548 913 87.0 0 MNSSSQEKKNKKFSSVFIYSSIIAAIVVIIGAVWPEKFDSVTNTAKMWITNNLGWYYLIL TTVIVFFCIFLIFSPIGKLKLGKPNDKPEFNTISWFAMLFSAGMGIGLVFYGAAEPMAHF AAPPTADPETTKAYTESLRSTFFHWGFHAWAIYGVVALALAYSQFRKGEPGLISRTLRPL LGDKVEGPIGTFIDVLSVFATLVGVAVSLGMGALQINGGLHYLFDVPNNTFVQGIIIVVV TILFIASAWSGLSKGIQYLSNLNIGLGTVLMIVTLIVGPTVLILNMMTSSTGSLLNSFLF NSFDTAALNGQKREWMSTWTLYYWGWWLSWSPFVGVFIARVSKGRSIREFISGVLLVPAI VSFIWFSVFGVLGIETGKKHSDLFKMSPETQLFGVFNHIPLGIVLSIIALLLIASFFVTS ADSATFVLGMQTTFGSLNPSSLVKVTWGVAQALIAFVLLLAGGGDGSKALNAIQSAAIIS AFPFSFVVIMMMISFYKDANKERKFLGLTLTPNKHRLQEYVKYQQEDYETDILEKREVRR NKEKEE >gi|224999886|gb|ACJC01000114.1| GENE 25 26731 - 29436 3261 901 aa, chain + ## HITS:1 COG:SA1184 KEGG:ns NR:ns ## COG: SA1184 COG1048 # Protein_GI_number: 15926930 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Staphylococcus aureus N315 # 1 901 1 901 901 1664 91.0 0 MASNIKEQAKKQFELNGQSYTYYDLQTLEEKGLTKISKLPYSIRVLLESVLRQEDDFVIT DDHIKALSEFGNEGNEGEVPFKPSRVILQDFTGVPAVVDLASLRKAMNDVGGDINKINPE VPVDLVIDHSVQVDSYANPEALERNMKLEFERNYERYQFLNWATKAFDNYNAVPPATGIV HQVNLEYLANVVHVRDVDGEKTAFPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAGMLGQ PSYFPIPEVIGVRLTHSLPQGSTATDLALRVTEELRKKGVVGKFVEFFGPGVQHLPLADR ATIANMAPEYGATCGFFPVDEESLKYMKLTGRDEEHIELVKEYLQQNHMFFDVEKEDPEY TDVIDLDLSTVEASLSGPKRPQDLIFLSDMKKEFEKSVTAPAGNQGHGLDQSEFDKKAEI NFNDGSKATMKTGDIAIAAITSCTNTSNPYVMLGAGLVAKKAVEKGLKVPEFVKTSLAPG SKVVTGYLRDSGLQQYLDDLGFNLVGYGCTTCIGNSGPLLPEIEKAVADEDLLVTSVLSG NRNFEGRIHPLVKANYLASPQLVVAYALAGTVDIDLQNEPIGKGKDGKDVYLQDIWPSIQ EVSDTVDKVVTPELFLEEYKNVYHNNEMWNEIDVTDEPLYDFDPNSTYIQNPTFFQGLSK EPGKIEPLKSLRVMGKFGDSVTTDHISPAGAIGKDTPAGKYLLDHDVAIRNFNSYGSRRG NHEVMVRGTFANIRIKNQLAPGTEGGFTTYWPTGEIMPIYDAAMKYKEDGTGLVVLAGND YGMGSSRDWAAKGTNLLGVKTVIAQSYERIHRSNLVMMGVLPLQFQQGESAETLGLDGKE EISVDINEDVQPHDLVNVTAKKENGEIINFKAIVRFDSLVELDYYRHGGILQMVLRNKLA Q >gi|224999886|gb|ACJC01000114.1| GENE 26 29559 - 30026 499 155 aa, chain + ## HITS:1 COG:SA1185 KEGG:ns NR:ns ## COG: SA1185 COG0824 # Protein_GI_number: 15926931 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Staphylococcus aureus N315 # 1 155 1 155 155 242 80.0 2e-64 MIYSLTEIEARYQETDKMGVIYHGNYATWFEVARTDYIRKLGFSYASMEEQGVISPVVDL KVQYKKSIYYPEKVTVKTWVEKYSRLRSTYCYEVYNENGELATTGSTELICIKADTFKPI RLDRYFPEWHETYSKVNQLNKEGKDAEVTFGTDHL >gi|224999886|gb|ACJC01000114.1| GENE 27 30075 - 30371 365 98 aa, chain - ## HITS:1 COG:SA1186 KEGG:ns NR:ns ## COG: SA1186 COG4841 # Protein_GI_number: 15926932 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 95 1 95 98 123 66.0 9e-29 MNIKLTQKAVEWFKNELDLPISNKVLQFYVKYGGEFQLKQGFSPAFTVENKDAIEIGFEQ TFFEINVVIAEKDLWYFQDETLTVDAIDHEDEIIYKRN >gi|224999886|gb|ACJC01000114.1| GENE 28 30615 - 31223 480 202 aa, chain - ## HITS:1 COG:SA1187 KEGG:ns NR:ns ## COG: SA1187 COG0344 # Protein_GI_number: 15926933 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 202 1 202 202 285 89.0 4e-77 MMIIVMLILSYLIGAFPSGLIIGKLFFKKDIRQYGSGNTGATNSFRVLGRPAGFIVTFLD IFKGFITVFFPLWFPVHADGVISTFFTNGLIVGLFAILGHVYPIYLKFNGGKAVATSAGV VLGVNPILLLILAIIFFSVLKIFKYVSLSSIIAAISCVIGSIIIHDYILLAVSGIVSIIL IIRHKSNIVRIFKGEEPKIKWM >gi|224999886|gb|ACJC01000114.1| GENE 29 31433 - 33427 2349 664 aa, chain + ## HITS:1 COG:SA1188 KEGG:ns NR:ns ## COG: SA1188 COG0187 # Protein_GI_number: 15926934 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Staphylococcus aureus N315 # 1 662 3 664 665 1147 92.0 0 MNKQNNYSDDSIQVLEGLEAVRKRPGMYIGSTDKRGLHHLVYEVVDNSVDEVLNGYGDAI TVTINQDGSISIEDNGRGMPTGIHASGKPTAEVIFTVLHAGGKFGQGGYKTSGGLHGVGA SVVNALSEWLEVEIHRDGNIYTQNFKNGGIPATGLVKTGKTKKTGTKVTFKPDSEIFKST TTFNFDILSERLQESAFLLKDLKITLTDLRSGKEREEIYHYEEGIKEFVSYVNEGKEVLH DVTTFAGHSNGIEVDVAFQYNDQYSESILSFVNNVRTKDGGTHEVGFKTAMTRVFNEYAR RINELKDKDKNLDGNDIREGLTAIISVRIPEELLQFEGQTKSKLGTSEARSAVDSVVSEK LPYYLEEKGQLSKSLVKKAIKAQQAREAARKAREDARSGKKSKRKDTLLSGKLTPAQSKN TDKNELYLVEGDSAGGSAKLGRDRKFQAILPLRGKVINTEKARLEDIFKNEEINTIIHTI GAGVGTDFKIEDSNYNRIIIMTDADTDGAHIQVLLLTFFFKYMKPLVQAGRVFIALPPLY KLEKGKGKNKKVEYAWTDEELENLQKQLGKGFTLQRYKGLGEMNPEQLWETTMNPETRTL IRVQVEDEVRSSKRVTTLMGDKVAPRREWIEKHVEFGMQEDQSILDNKEVQILENEKYIE EETN >gi|224999886|gb|ACJC01000114.1| GENE 30 33424 - 35826 2508 800 aa, chain + ## HITS:1 COG:SA1189 KEGG:ns NR:ns ## COG: SA1189 COG0188 # Protein_GI_number: 15926935 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Staphylococcus aureus N315 # 1 799 1 799 800 1246 83.0 0 MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT EAKLSQLSEELLRDINKETVSFIPNYDDTTLEPMVLPARFPNLLINGSTGISSGYATDIP PHNLAEVIQGTLKYIDQPDITINQLMKYIKGPDFPTGGIIQGIEGIKKAYETGKGRVVVR SRVDEEPLRSGRKQLIVTEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIA IELKKDANSESIKNYLYKNSDLQISYNFNMVAISEGRPKLMGLREIIESYLNHQIEVVTN RTRYDLEQAEKRMHIVEGLMKALSILDEVIALIRNSKNKKDAKDNLVAEYDFTEAQAEAI VMLQLYRLTNTDIEALKKEHEELEALIKELRNILDNHEALLAVIKDELNEIKKKFKVDRL STIEAEISEIKIDKEVMVPSEEVILSLTQHGYIKRTSTRSFNASGVTEIGLKDGDRLLKH EAVNTQDTVLVFTNKGRYLFIPVHKLADIRWKELGQHISQIVPIDEDEEVVNVYNEKDFK NEAFYIMATKNGMIKKSSASQFKTTRFNKPLINMKVKDNDKLINVVRLETDQLITVLTHK GMSLTYSTNELSDTGLRAAGVKSINLKDEDYVVMTEDVNDSDSIIMVTQRGAMKRIDFNV LQEAKRAQRGITLLKELKKKPHRIVAGAVVKENHTKYVVFSQHHEEYGKIDDVHLSEQYT NGSFIIDTDDFGEVESMILE >gi|224999886|gb|ACJC01000114.1| GENE 31 36038 - 37495 827 485 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 20 454 11 445 456 323 41 5e-87 MQDFDNLIPGWFKTFVQVGNDLIWSQYLIGLLLTAGFFFTISSKFIQLRMLPEMFRALTE KPETLSSGEKGISPFQAFAISAGSRVGTGNIAGVATAIVLGGPGAVFWMWVIAFIGAASA FMEATLAQVYKVHDKEGGFRGGPAYYITKGLNQKWLGIVFAVLITVTFAFVFNTVQANTI AESLNTQYNISPVITGIVLAVITGIIIFGGVRSIATLSSLIVPIMAIVYIGMVLIILLLN IDQIVPMIGTIIKSAFGVQQVTGGAVGAAILQGIKRGLFSNEAGMGSAPNAAATAAVPHP VKQGLIQSLGVFFDTMLVCTATAIMILLYSGLQFGDSAPQGVAVTQSALNEHLGSAGGIF LTVAVTLFAFSSVVGNYYYGQSNIEFLSNNKMILFIFRCFVVLLVFVGAVAKTETVWSTA DLFMGLMAIVNIISIIGLSNIAFAVMKDYQRQRKEGKRPVFKPENLEINLFGIETWGQHA KMPKK >gi|224999886|gb|ACJC01000114.1| GENE 32 37690 - 38538 730 282 aa, chain + ## HITS:1 COG:SA1191 KEGG:ns NR:ns ## COG: SA1191 COG3711 # Protein_GI_number: 15926937 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Staphylococcus aureus N315 # 1 280 1 281 283 306 61.0 2e-83 MSKYVITKTLNNNVIICTKNHQEVVLIGKGIGFNKKVGMTVQENASIEKIYKLEQQEQQE HYKTLLELGEDHVVQAVIDSVNIINESGLITDDKNLVVALTDHIIYAYKRLKQHQMITNP FVIETKHLYSNAYNVARKVIDKLNKTLDVHFPEDEIGFIALHIASNSEKLSIHDISVINK LINKSITIIETDLQHSIDKQTIQYQRFIRHIQFLIYRLTKGEYLEAQENFISMIKTMYPR SFNTAYKILKMIQREFSVYVYEAEIVYLTLHINHFEVQISSK >gi|224999886|gb|ACJC01000114.1| GENE 33 38685 - 39902 971 405 aa, chain + ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 3 401 2 399 402 580 78.0 1e-165 MKNEKEINGKKSHFFSLSESRFMRFLGGNDLIYALIALVLLGIVIFIFDKISYVFQPFII VFNTIAAPIIVSLVLFYLFNPIVNMMERYRIPRLLGITIIYVAIVGIITLIVNLLIPIIG SQIESFIKNTPNYLHKITRSLDKLNNNTILSGYMGQVNEWLESAQKKIPSMVSDYSDGFG SKLATFAEAVANIGIVIGTTPFVLFFMLKDGHKFKDYTTKIMPPKFRKDFHDLLEKMSVQ VGSYIQGQIIVSFCIGLLLFIGYSIIGLKYALVLASIAAVTSVVPYLGPTIAISPAIVIA IITSPLMLLKLAVVWTLVQFFEGHFISPNVMGKTLKIHPLTIIFILLCAGNLMGIVGVII GIPLYAVLKVLVSHIFMLFKRRYNRYYGNDAGEYTITEEEKGIKQ >gi|224999886|gb|ACJC01000114.1| GENE 34 40151 - 42673 1966 840 aa, chain + ## HITS:1 COG:SA1193_2 KEGG:ns NR:ns ## COG: SA1193_2 COG2898 # Protein_GI_number: 15926940 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 246 840 1 595 595 864 74.0 0 MTQELKSKLLSFLKLIFATALFIFVIFTLYRELSHINFKETFIQFGKINRLWLVLLFAGG GLSLILLSLYDIILVKSLKLKMPMIRVFRVSYIINALNSIIGFGGFIGAGVRAFVYKNYT NDTKKLVQYISIILVSMLTGLSLLSILVVLRIFNASHMIDEISWVRWILYIVALFLPIFI FYTVARPVDRNNRFMGVYCTVVSCVEWMAAATVLYFAALIVDIHISFMTFVGIFVIAALS GLVSFIPGGFGAFDLVVLLGLKSLGISEEKILLALVLYRFAYYFVPVMIALILSSFEFGN TAKKYLDNSKYFIPVKDFTSFLRSYQKDILAKIPSFSLAILIFLTSIIFFINNLTIVYDG LYDGNHFAYYIALAIQTGACLLLILNVRGIYKGSRRAIIYAFISIILIASVTIYTYASFL LLSWLIIIFVLLILAYQRAQVLKRPLRFKKLAFMLLLSIFILYLNHILISGTLYALDVYH IEIDTSLLRYYFWMTIIIIMLLVGVIAWLFDYKYKRSHHSVDLTLCDEIIQKYGGNYLSH LVYSGDKDCFFNENKDSFIMYRYKSNALVVLGDPIGNTKSFESLLEAFYQFAEYQGYEII FYQISDQYMPLYHNFGNQFFKLGEEAIIDLTTFTTSGKKRRGFRATLNKFDDLNINFEII EPPFTQDFFDELKFVSDKWLDGRSEMHFSVGQFTQTYLSKAPIGVMRDHSGKMIAFCSLM PTYSNNAISVDLIRWLPELDLPLMDGLYLHMLLWSKEKGYKAFNMGMATLSNVGQLHYSY LRERMAGRVFEHFNGLYRFQGLRRYKEKYSPNWEPRFLVYQKHYSLWESMLKVMRVIRHK >gi|224999886|gb|ACJC01000114.1| GENE 35 42876 - 43391 560 171 aa, chain - ## HITS:1 COG:SA1194 KEGG:ns NR:ns ## COG: SA1194 COG0225 # Protein_GI_number: 15926941 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 1 165 1 165 169 259 78.0 1e-69 MNINTAYFAGGCFWCMTKPFDTFDGIEKVTSGYMGGHLVNPSYEEVKTGSTGHYEVVKIE YDVALFSYHKLLEIFFSVIDPLDDGGQFQDRGSQYKTAIFYSNEHQRQLAEQYICELQDS FNADKAIATKILPASTFYEAEAYHQDFYKKNPERYKQEQQDRANYIKDNHM >gi|224999886|gb|ACJC01000114.1| GENE 36 43527 - 44516 880 329 aa, chain + ## HITS:1 COG:SA1195 KEGG:ns NR:ns ## COG: SA1195 COG1316 # Protein_GI_number: 15926942 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 5 329 3 327 327 462 76.0 1e-130 MTEQKDIKETEYRRQKGTTSTPSRRRNKKRMRKLPFIILIILIILISIIVYITHQYNSGM KYAKEHAKDVKVHKFNGNMKNDGKISVLVLGADKAQGGKSRTDSIMIVQYDYVHKKMKMM SVMRDIYAHIPGYDKYKINAAYSLGGPELLRKSLNKNLGINPEYYAVVDFTGFEKMIDEL QPNGVPIDVEKDMSENIGVSLKKGHHKLNGKELLGYARFRHDPEGDFGRVRRQQQVMQTL KQELVNFNTVAKLPKVAGILRGYVNTNMPNSAIFQTGISFGIRGDKDVQSLTVPIKGSYQ DINTNNDGSALQIDSEKNKQAIKNFFEDN >gi|224999886|gb|ACJC01000114.1| GENE 37 44579 - 44764 337 61 aa, chain - ## HITS:1 COG:SAS044 KEGG:ns NR:ns ## COG: SAS044 COG1942 # Protein_GI_number: 15926943 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Staphylococcus aureus N315 # 1 61 2 62 62 89 81.0 1e-18 MPIINVKLLEGRSDEQLKDLVTEVTHAVEKTTGANKEAIHVVIEEMRKDHYAVGGVRKSD Q >gi|224999886|gb|ACJC01000114.1| GENE 38 44908 - 46170 1032 420 aa, chain + ## HITS:1 COG:SA1196 KEGG:ns NR:ns ## COG: SA1196 COG0389 # Protein_GI_number: 15926944 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 420 1 420 420 756 84.0 0 MYDYNLLEDRDVLCIDQKSFFASVSCMEKGLDPLTTKLAVVADTKRQGSVVLAATPKLKE LGIKTGSRLFEIPHRNDIYIINPSMRKYLNVSVAISKIALRYVPPEDLHQYSIDEFFMDV TDSYHRFNSTVFAFCKRFQNEILEETGIHCTIGIGSNMLLSKVAMDIEAKHTENGIAEWR YQDVPEKLWPIQPLRDFWGINKRTEKKLNKRGIFTIGDLAKYPYHYLKRDFGVLGIDMHL HANGIDQSKVREKYKVTNPSICKSQILMRDYQFEESKVVMQELIEDVASRLRAEKKLART IHFSFGYAEGGGIHKQYTLEDPTNLERDIFKVINYFANRLCDKKALYRTLSVSLTQFIKE SDRQLNLFIDEYERKKDEKLAKTIDHLHLKYGKGIVSKATSYTEAGTKHGRLGLMAGHKM >gi|224999886|gb|ACJC01000114.1| GENE 39 46244 - 47332 1070 362 aa, chain - ## HITS:1 COG:SA1197 KEGG:ns NR:ns ## COG: SA1197 COG0287 # Protein_GI_number: 15926945 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 361 1 361 363 459 65.0 1e-129 MRNILFVGLGLIGGSLASNLKYHYSNFNILAYDSDYTQLDKALSIGIIDQKVNDYAAAVE IADIIIFATPVEQTIKYLSELTNYNTKTHLIVTDTGSTKLTIQSFEKELLKHDIHLISGH PMAGSHKSGVLNAKKHLFENAYYILVFNEMENNESATYLKKLLKPTLAKFIVTHANEHDF VTGIVSHVPHIIASILVHLSANHVKDHSLIEKLAAGGFRDITRIASSNAQMWKDITLNNP NHILSLLNEIKEQITGIEHLIQEQNSNSIYDFFVKAKDYRDQLPVKQHGAISTAYDLYVD IPDKPGMISQITNIISSHNISIINLKILEVREDIYGALQISFKNPEDRENAIKALANFDT YY >gi|224999886|gb|ACJC01000114.1| GENE 40 47993 - 49399 1083 468 aa, chain + ## HITS:1 COG:SA1199 KEGG:ns NR:ns ## COG: SA1199 COG0147 # Protein_GI_number: 15926947 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Staphylococcus aureus N315 # 1 468 1 468 468 607 67.0 1e-173 MDIVYKKVNAQITPEALAKLKQKKIIFESTNQQQLKGRYSIVIFDHYGKITLDNSQLLIK LDNHCEIIKNQPYQRLKELVDKYYFEIKDKYLKDLPFISGFIGTCSFDLVRHEFKKLQDI KLEDHQTHDVQFYLVEDVFVFDHYKDELYIIASNLFSDRTKERLKESIERKIEDLKKIHF SVEDIKYKSIPRHITTNISEQKFVQTIRRLKKKITEGDMFQVVPSRIYSYKHHFQHNLHQ LTFQLYQNLKRQNPSPYMYYINKDMPIVIGSSPESFVKVKNGKVYTNPIAGTIKRGQNKI EDENNEKTLMKDEKELSEHRMLVDLGRNDIHRISKTGTSQITKLMTIERYEHVMHIVSEV TGELKPNLSPMSVIASLLPTGTVSGAPKLRAIQRIYESYPYKRGIYSGGVGYINCNHHLD FALAIRTMIIDEETVSVEAGCGIVYDSIPEKELEETKLKAKSLLEVTP >gi|224999886|gb|ACJC01000114.1| GENE 41 49396 - 49962 505 188 aa, chain + ## HITS:1 COG:SA1200 KEGG:ns NR:ns ## COG: SA1200 COG0512 # Protein_GI_number: 15926948 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Staphylococcus aureus N315 # 1 187 1 188 188 249 63.0 2e-66 MILIIDNYDSFTYNLVDIVEKQCETIVKYPDDPNICNLKGITAVIISPGPGHPLDNQLLI KLIENFENLPILGVCLGAQALTCYYGGDVIQGSCVKHGKVDTLTIVNRSPLYKGIKSSFK VMRYHSLISDPCSFPESLLITGQTYDCIQSFQHKNRKHYGIQFHPESFATENGKQIIINF INIATRGS >gi|224999886|gb|ACJC01000114.1| GENE 42 49965 - 50960 990 331 aa, chain + ## HITS:1 COG:SA1201 KEGG:ns NR:ns ## COG: SA1201 COG0547 # Protein_GI_number: 15926949 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 331 1 331 332 381 58.0 1e-106 MPLLEKIKQNKSLSKKDMQSFIITLFDSNIETNVKVELLKAYTNKDMGQYELTYLVEYFI QTNYPDQPFYNKAMCVCGTGGDQSNSFNISTTVAFVVASAGVPVIKHGNKSITSHSGSTD VLHEMNIKTNKMYEVEQQLNSKGLAFISATDSYPMMKKLQSIRKSIATPTIFNLIGPLIN PFKLTYQVMGVYEASQLENIAQTLKDLGRKRAILIHGANGMDEATLSGENIIYEINSESA LKKYSLKAEEVGLAYAKNDTLIGGSPQKNKQIALNILSGNDQSSKRDVVLLNAGIALYVA EQVESIKHGVERAKYLIDTGMAMKQYLKMGG >gi|224999886|gb|ACJC01000114.1| GENE 43 50964 - 51752 615 262 aa, chain + ## HITS:1 COG:SA1202 KEGG:ns NR:ns ## COG: SA1202 COG0134 # Protein_GI_number: 15926950 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Staphylococcus aureus N315 # 1 257 1 257 260 299 62.0 4e-81 MTILNEIIEYKKTLLERKYYDKQLEILQDNGNVKRRKLIESLNNDKRLSVIAEIKSKSPS VPQLPQRDLVQQVKDYQKYGANAISILTDEKYFGGSFERLNQLSKVTSLPVLCKDFIIDK IQIDVAKRAGASIILLIVNILSDDQLKEFYSYATNHNLEVLVEVHTISELERAHQINPKI IGVNNRDLKRFETDVLHTNKLLKFKKSNCRYISESGFHTKEDVEKIVDSSIDGLLVGEAL MKTNDLSQFLPSLKLKKDLYDN >gi|224999886|gb|ACJC01000114.1| GENE 44 51742 - 52365 482 207 aa, chain + ## HITS:1 COG:SA1203 KEGG:ns NR:ns ## COG: SA1203 COG0135 # Protein_GI_number: 15926951 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylanthranilate isomerase # Organism: Staphylococcus aureus N315 # 1 206 1 206 210 213 50.0 2e-55 MIIKFCGFKTESDIKKIRKIEVDAVGFIHYPNSKRHVSLNQLKYLAKIVPDHIEKVVVVV NPQISTIKRIINQTDINTIQLHGNESIELIRNIRKLNSKIRIIKAIPATRNLNNNIQKYK DEIDMFIIDTPSITYGGTGQSFDWKLLKKVKDVDFLIAGGLDFEKIKRLEKYSFGQRGYD ISTGIESHNEKDFNKMTQILKFLKGDV >gi|224999886|gb|ACJC01000114.1| GENE 45 52369 - 53604 1396 411 aa, chain + ## HITS:1 COG:SA1204 KEGG:ns NR:ns ## COG: SA1204 COG0133 # Protein_GI_number: 15926952 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Staphylococcus aureus N315 # 2 402 4 404 404 658 81.0 0 MKIQTEVDELGFFGEYGGQYVPETLMPAIIELKKAYEDAKLDTHFKEEFNYYLSEYVGRE TPLTFAESYTKLLGGAKIYLKREDLNHTGAHKINNAIGQALLAKRMGKTKLVAETGAGQH GVASATIAALFDMDLIVFMGSEDIKRQQLNVFRMELLGAKVVSVSDGQGTLSDAVNKALQ YWVNHVEDTHYLLGSALGPDPFPTMVRDFQSVIGNEIKSQILSKEGRLPDALVACVGGGS NSIGTFYPFIQDDVKLYGVEAAGKGSHTHNHALAIGKGKPGVLHGSRMYLIQNDDGQIEL AHSISAGLDYPGIGPEHSYYNDIGRVSYVSATDNEAMEALITFSKVEGIIPAIESAHALS YVEKLAPNMDENEIIVVTISGRGDKDMETIKQYKENGGEQNEQIIHSVYYG >gi|224999886|gb|ACJC01000114.1| GENE 46 53570 - 54301 378 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148984260|ref|ZP_01817555.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP3-BS71] # 4 221 19 240 258 150 34 6e-35 MSKLFIPYIMGDLNFIHHLKTLTENGADIVEIGVPFSDPVADGPIIMKAGRKAIDEGSNI NFIFDELIKNKNTISSKYVLMTYYNILSAYGEKLFLDKCDEAGVYGLIIPDLPYELTKKF KKEFYHHSVKIISLIAMTASDARIMQIAKNSEGFIYTVTMNATTGNSGEFHPDLKRKIEY IKKVSKIPVVAGFGIKNPEHVKDIASVADGIVIGSEIVKRIEIDSRKEFITYIKSIRTAL NSF >gi|224999886|gb|ACJC01000114.1| GENE 47 54492 - 55151 870 219 aa, chain + ## HITS:1 COG:AGl1155 KEGG:ns NR:ns ## COG: AGl1155 COG0693 # Protein_GI_number: 15890694 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 3 218 9 228 230 139 36.0 4e-33 MSKKVLFVLTSTSQFTDGTETGLWLEEAGAPYNILTEEGINVDVISIKGGKVNLDPNSVS NESLNQYAKFVSHLNDTPSIENVNADEYDAIYLPGGHGTVYDFANNEKLADILLQFKNSN KVISSVCHGPSAFVGVKDANNDYLVDGVKITSFTDSEEKAMGFENKVPFLTQSKLEEQGA NFVVKDDFTSHVEKDGQFITGQNPQSSEEIGKALANELK >gi|224999886|gb|ACJC01000114.1| GENE 48 55424 - 56677 1080 417 aa, chain + ## HITS:1 COG:SA1206 KEGG:ns NR:ns ## COG: SA1206 COG2348 # Protein_GI_number: 15926954 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 416 1 416 420 652 82.0 0 MKFTNLTAKEFSDFTDRMTYSHFTQMEGNYELKVAEGTESHLVGIKNNDNEVIAACLLTA VPVMKIFKYFYSNRGPVIDYNNKELVHFFFNELSKYVKKYNCLYLRVDPYLPYQYLNHEG EITGNAGHDWIFDELESLGYKHEGFHKGFDPVLQIRYHSVLNLANKSANDVLKNMDGLRK RNTKKVKKNGVKVRFLSEEELPIFRSFMEDTSETKDFADRDDSFYYNRFKHYKDRVLVPL AYINFDEYIEELNNERNVLNKDYNKALKDIEKRPENKKAHNKKENLEQQLDANQQKINEA ENLKQEHGNELPISAGFFIINPFEVVYYAGGTSNRYRHFAGSYAVQWKMINYAIEHGIDR YNFYGISGDFSEDAEDAGVVKFKKGYDADVIEYVGDFIKPINKPMYNIYRTLKKLKK >gi|224999886|gb|ACJC01000114.1| GENE 49 56703 - 57956 1131 417 aa, chain + ## HITS:1 COG:SA1207 KEGG:ns NR:ns ## COG: SA1207 COG2348 # Protein_GI_number: 15926955 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 407 1 409 419 679 86.0 0 MKFTELTVKEFENFVQNPSLESHYFQVKENIATRESDGFQVVLLGVKDDDNRVIAASLFS KIPTMGSYVYYSNRGPVMDYSDLGLVDFYLKELDKYLHQHQCLYVKLDPYWLYQVYDKDI NPLTEKNDALVNLFKSHGYDHHGFTTQYDSSSQVRWMGVLDLEGKTPTSLRKEFDSQRKR NINKAINYGVKVRFLSKDEFDLFLDLYRETEARTGFASKTDDYFYNFIEHYGDKVLVPLA YIDLSEYIQHLQESLNDKENRRDDMMAKENKTDKQLKKIAELDKQIDHDKKELLQASELR QTDGEILNLASGVYFANAYEVNYFSGGSSEKYNQYMGPYAMHWHMINYCFDNGYDRYNFY GLSGDFTENSEDYGVYRFKRGFNVKIEELIGDFYKPINKVKYWLFNTLDRIRNKLKK >gi|224999886|gb|ACJC01000114.1| GENE 50 58979 - 59743 902 254 aa, chain + ## HITS:1 COG:SA1209 KEGG:ns NR:ns ## COG: SA1209 COG0561 # Protein_GI_number: 15926957 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 253 1 254 255 212 45.0 7e-55 MNFIFDIDGTICFDGCSIDPSIKQRLFKLRQANHNVMFASARPIRDLLPVIPEFADDTLI GGNGSIISKNGQIEIVSVINEHDISLIKKLIKKYQLSYIIDDKFNYASNLDTNNELYQRI DPDGKAQSLDMDEIRNPIKAILLNIDKKNFDMIAHQLVSQSHGIELIRHYSESYIDVTAR GVDKYTTIQYVLGTNSDYIAFGNDHNDVHMLEHASQGYFVTNQFIEHTLFFKNQNITVID DTIHAICEVLDKYL >gi|224999886|gb|ACJC01000114.1| GENE 51 59893 - 60819 983 308 aa, chain + ## HITS:1 COG:SA0691 KEGG:ns NR:ns ## COG: SA0691 COG4607 # Protein_GI_number: 15926413 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 4 302 36 337 342 213 41.0 3e-55 MIQKKTVTIKNTYEFKDKNNTHHRGETKTDTVKVPYNPHRVAVLDYGALDVMKQLGLQNK IVSIAKGQGNAFLPSSLAEFKDDKYSNLGNPGRPNFDQLAKSKPELILASFRQAHTKTID EMKKAAPNAKILFVSPDNDHYLSSIKSHTSTIGKIFNKENEANDLNKKLEQQVTETKKSI NHDSVLFLVVDDKGIKAFSSNGRFGGFLNKDLGIKHVDKNMKDNSAGNNINYEYLNKVNP DKIFVIDRTKNGTDNKEPSILQNKVIENVKAIKNHQVYQFESNAWYFGEGGNQLTIEQLK RIKDAFQK >gi|224999886|gb|ACJC01000114.1| GENE 52 60949 - 61644 336 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 1 229 278 522 563 134 30 2e-55 MIQFDHVDYSYHRKQPVLKDINISIQRGEKIGILGESGAGKSTIGSLILGQLKPTKGKII INSSKVLPIFQHATESFDRQFTIEQSLREPLLFYRQLKPQNIKNIILNYLIEFNLSTDLI TKFPQEVSGGQLQRLNIIRSLLAQPDILVCDEITSNLDVMAEQNVINILLNEKNIENKTL IVISHDLSVLQRLTNRIIVIKDGQIVDEFKSKDLFNHQRHPYTKLLIQTYE >gi|224999886|gb|ACJC01000114.1| GENE 53 61647 - 62423 264 258 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 3 258 8 270 563 106 30 2e-55 MKLLTIKNLNISDKEEQAIIKNVDLNIYHQSLNVIIGESGAGKSLTVKAILNHLPTQLHM SFDEFKMQGQNTSGIKQLLGKHIGYISQNYAQSFNEYTRLDKQLIAIYRYHFNVSKDNAL KKIKKALTWVNLNDESIINKYSFQLSGGQLERVNIASVLMLDPELIIADEPVASLDVVNG HQIMQLLQHIVKDHHNTVLLITHNMNHVLKYADYFNVMKNGMMIESGEIGKLFNHQHLHR YTEQLLSYRSKLQKEDNI >gi|224999886|gb|ACJC01000114.1| GENE 54 62386 - 63240 661 284 aa, chain - ## HITS:1 COG:SA1213 KEGG:ns NR:ns ## COG: SA1213 COG1173 # Protein_GI_number: 15926961 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 5 270 5 270 276 358 70.0 7e-99 MKFKLSKKNTIFFIFTVYIICLIVLQFIVNDKAAYQVHLSNSFEPISMNHLLGTDDYGRD LFSRLVVGSRATLFVTLLTLLFTVVVGVPLGLLAGYKKGWVDTIIMRIIDIGLSIPEFVI MIALASFFHPSLWNLVIAITIIKWMNYTRVTRGIVNTEMNQSYIQMAQYFNVSTLNILFK HLLPKVLPSIFVIMIVDFGKIILYISSLSFLGLGAQPPSPEWGAMLQAGREFITSHPIMI IAPASLISCTILIFNLTGDAVRDRLLEQRGVKVETFNNKKSKHQ >gi|224999886|gb|ACJC01000114.1| GENE 55 63230 - 64231 821 333 aa, chain - ## HITS:1 COG:SA1214 KEGG:ns NR:ns ## COG: SA1214 COG0601 # Protein_GI_number: 15926962 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 307 3 305 328 379 67.0 1e-105 MFKMIIYKLSQMIVVLFILTTITFILMKLSPGNPVDKILHLDISHVSHEQIETTKNKLGL NDSIFIQWLHWLNQLFHFDLGTSYQTNEPVIREIANYLGPTLIITFGTLIMSLVISIPLG IIAAIYYHKIWDRIIRVMTSLSVSLPSFFIGLILLYIFSLKLNVLPTSDEGRFASYILPI ITMSIGMCAYYIRFIRSTLLEQYQTPIVESSRLRGMPERYILFQDILKPTILPIIPLLGL SIGSLIGGTVVIENLFDIPGLGYFLVDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLSL LIDPKQRYTITQKETLKFKWLNSHKKEGRNDEV >gi|224999886|gb|ACJC01000114.1| GENE 56 64410 - 64748 228 112 aa, chain - ## HITS:1 COG:no KEGG:SERP0954 NR:ns ## KEGG: SERP0954 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 112 1 112 112 197 100.0 1e-49 MTIFDMPNYLWITILGMILLTVFYTLVLNKWFQSAIITFVVLAVLAFFIPNFQSISYQPL LGYAGFLGIMSLIISFLIWYFSRNWRKNRRKIKLEKEIRKYDDEESLRRHHK >gi|224999886|gb|ACJC01000114.1| GENE 57 64996 - 66807 1663 603 aa, chain + ## HITS:1 COG:SA1216 KEGG:ns NR:ns ## COG: SA1216 COG1164 # Protein_GI_number: 15926964 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Staphylococcus aureus N315 # 1 601 1 601 604 901 75.0 0 MSEGLPLREEVPVRETWDLKDLFTSDQAFYQTLEQVVQMSLDFNHTYYQKLNNIETIEKA LDEYERILIEIDRLYNYPELRLSVDTANEEAQKVNAKLNTTSGKLAGLLSFVDSEILELS DDKISELRSRTKYPHFIKQLQDRKPYQLSADVEKVLATLTPTLRSPFELYGTTKSLDINF ESFDYEGVTYPLDYATFENEYEDHPSPEFRRKSFRAFSDALRQYQHTTAATYNMQVQQEK IEADLRGYDSVIDYLLQDQEVTKDMFDRQIDVIMSDLAPVMQKYAKIIQRVHNLDKMRFE DLKISIDPNFEPEISIEKSKKYIYGALNVLGDDYVKMLESAYDYRWIDFAQNKGKDTGAY CASPYATHSYVFISWTGKMAETFVLAHELGHAGHFTLAQKHQNLLESEASMYFVEAPSTM NEMLMANYLFNSSNDPRFKRWVIGSILSRTYYHNMVTHLLEAAYQREVYRRVDNGESLTA PLLNEIMLNTYKAFFGDTVEMTDGVELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQCIKN EGQPAVDRWLKTLQAGGSQSPIELAQIAGVDITTDAPLKETINYISNLVDELEVLTYQIE ENS >gi|224999886|gb|ACJC01000114.1| GENE 58 66900 - 67547 573 215 aa, chain - ## HITS:1 COG:SA1217 KEGG:ns NR:ns ## COG: SA1217 COG0704 # Protein_GI_number: 15926965 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Staphylococcus aureus N315 # 1 212 1 212 213 280 70.0 2e-75 MAIIRQKYEGQLDGLIKDLRRLGLRVYFNINNALVSLGEEKKSFARQTIEKDKEINHLDH EINEKVIMLITRQQPIATDLRMMMAALKISTDFERMGDNAASIAHIRLRVKINDNYVFTR LKTMGKLAMLMLEDLNNAIRNKDLPLIKEVIERDEDIDDLYVNIVNTSYLIDNDPFVAGQ AHLAARHLERIGDHISNIAESVYYYLTGQHFETFD >gi|224999886|gb|ACJC01000114.1| GENE 59 67554 - 68429 292 291 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 48 287 5 240 245 117 33 6e-25 MVNSQVADKEKLDAQTNNQDSVATIVTTENNKKYTIPDSEKKIVYSTQNLDLWYGENHAL QNINLDILENNVTAIIGPSGCGKSTYIKALNRMVELVPSVKTAGKILYRDQNIFDAKYSK EKLRTNVGMVFQQPNPFPKSIYDNITYGPKTHGIKNKKILDEIVEKSLRGAAIWDELKDR LHTNAYGLSGGQQQRVCIARCLAIEPDVILMDEPTSALDPISTLRVEELVQELKENYSII MVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIFSNPADKQTEDYISGRFG >gi|224999886|gb|ACJC01000114.1| GENE 60 68517 - 69422 1047 301 aa, chain - ## HITS:1 COG:SA1219 KEGG:ns NR:ns ## COG: SA1219 COG0581 # Protein_GI_number: 15926967 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 301 1 305 305 400 77.0 1e-111 MSTNSNTANKTLIDKDAVEKNISSRDKKNSVNKWLFLLCTLIGLIVLVALLIQTFVKGAG HLTPEFFTNFSSSTPADAGIKGALVGSIWLILSIIPISIILGIGTAIYLEEYARDNIFTQ IVKVSISNLAGVPSIVFGLLGYTLFVGAAGLGNSVLAAALTMSLLILPVIIVASQEAIRA VPSSVREASYGLGANKWQTIRRVVLPAALPGILTGFILSLSRALGETAPLVMIGIPTILL ATPSGLLDQFSALPTQIYTWAKMPQAEFQNVASAGIIVLLVILLLMNAIAILLRNKFSKK F >gi|224999886|gb|ACJC01000114.1| GENE 61 69424 - 70350 936 308 aa, chain - ## HITS:1 COG:SA1220 KEGG:ns NR:ns ## COG: SA1220 COG0573 # Protein_GI_number: 15926968 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 308 1 308 308 416 83.0 1e-116 MASQTKVREMIAKNNAKKGGLSDKIVPIILAIISAISILTTIAILFTLLTETITFFTRVP LSKFFLSGTWNPTGSSPEFGIWALIIGTLKITVIATIVAVPIGLGAAIYLNEYASDRSRR IIKPILEILAGIPTIVFGFFALTFVTPILRNLIPNLGEFNSISPGIVVGIMIVPMITSMS EDAMSSVPDKIREGAFGLGATKFEVATKVVLPAATSGVVASIVLGISRAIGETMIVSLAA GSSPTSSLSLTSSIQTMTGYIVEIATGDAAFGSDIYYSIYAVGFTLFIFTLIMNLLSQWI SKRFREEY >gi|224999886|gb|ACJC01000114.1| GENE 62 70557 - 71534 1471 325 aa, chain - ## HITS:1 COG:SA1221 KEGG:ns NR:ns ## COG: SA1221 COG0226 # Protein_GI_number: 15926969 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 312 1 311 327 427 84.0 1e-119 MKKWQLVGTTVLGASVLLGACGGNDGGSGDGKDLKGSAKGEGSSTVAPIVEKLNEKWAKD HKDAKISSGQAGTGAGFQKFIAGETDFSDASRPIKDEEKKKLEDKGIKYHEFKIAQDGVT IAVNKDNDFVKELTKSQLKDIYSGKAKTWKDVNSSWPDKKINAVSPNSSHGTYDFFEEEV MDKQDIKAEKNADTNAIVSSVTKNKEGIGYFGYNFYEQNKDKLKEVKIKDDNGKVTEPTK KTIQNGSYALSRPLFIYAKDKSLKDNKVMSEFMKFVLEDEGQAAEDAGYVASPKKTYKSQ LDDLKDFLDKHQKSDKKDDKKSEDK >gi|224999886|gb|ACJC01000114.1| GENE 63 72152 - 73048 447 298 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 32 284 25 275 285 176 37 6e-43 MALDKDIVGSIEFLEVVGLQGSTYLLKGPNDESVKLNQSEVADEDDFEIGEEYSFFVYPN RSGDLFATQNMPDITKDKYDFAKVIKTDRDGVHIDVGLPREVLVPWEDLPKLKELWPQAG DYLLVTLRIDSTNQMFGRLASETIVESMFTPVNDDSKQNEYISARAYRLLRVGSFLLSNE GYKIFVHESERKHEPRLGEEVEVRIIGHNEKGELNGSFLPLAHERLDDDGQVIFDLLVEY DGELPFWDKSSPDAIKEVFNMSKGSFKRAIGHLYKKKIINIETGKITLTKKGWSRVDD >gi|224999886|gb|ACJC01000114.1| GENE 64 73259 - 74866 1803 535 aa, chain + ## HITS:1 COG:SA1224 KEGG:ns NR:ns ## COG: SA1224 COG0488 # Protein_GI_number: 15926972 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Staphylococcus aureus N315 # 1 533 1 533 533 979 94.0 0 MLQVTDVSLRFGDRKLFEDVNIKFTEGNCYGLIGANGAGKSTFLKILSGEIDSQTGHVSL GKDERLAVLKQDHFAYEDERVLDVVIKGHERLYQVMKEKDEIYMKPDFNDEDGIRAAELE GEFAEMNGWNAEADAANLLSGLGIEPDLHDKNMSELENNQKVKVLLAQSLFGDPDVLLLD EPTNGLDIPAISWLEDFLINFENTVIVVSHDRHFLNNVCTHIADLDFGKIKLYVGNYDFW YQSSQLAQKMAQEQNKKKEEKMKELQDFIARFSANASKSKQATSRKKQLEKIELDDIQPS SRRYPYVKFTPEREIGNDLLTVENLSKTIDGEKVLDNVSFTMNPNDKAILVGDSEIAKTT LLKILAGEMEPDEGTFKWGVTTSLSYFPKDNSEFFDDVDMNLVEWLRQYAPEDEQTETFL RGFLGRMLFSGEEVKKKASVLSGGEKVRCMLSKMMLSSANVLLLDEPTNHLDLESITAVN DGLKSFKGSIIFTSYDFEFINTIANRVIDLNQAGALSKEVPYEEYLQEIGVLQNN >gi|224999886|gb|ACJC01000114.1| GENE 65 75445 - 76677 1247 410 aa, chain + ## HITS:1 COG:SA1225 KEGG:ns NR:ns ## COG: SA1225 COG0527 # Protein_GI_number: 15926973 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Staphylococcus aureus N315 # 11 410 2 401 401 622 83.0 1e-178 MSPLIIGGLKLNRSVLKFGGSSVSDFKKIKNIAEMLKTRIEDGEELIVVVSAMGKTTDQL MNNVSSLTSTPKDQELALLLTTGEQQTVSYLSMVLNDIGVNAKAMTGYQAGIKTVGHHLK SKIAEINPNIFDEAFKDHDILVVAGFQGINDDFELTTLGRGGSDTTAVALAASNQIPCEI YTDVDGVYATDPRILNEAKRLEYVSYEEMMEMSALGAGVLETRSVELAKNYDIPLYLGRT LSNMKGTWIMSKSDLLEKKAVTGVALDTHMMHVTISYPLPDNQLLTQLFTALEEESVNVD MISQIVNLEGLQLSFSIKDSDAHQISSILENLSIHFSALDYKINEAYVKISLIGSGMRDM SGVASKAFMTLINSDIPFYQTTTSEISISYVIDEENGEKAVEELYHAFEI >gi|224999886|gb|ACJC01000114.1| GENE 66 76748 - 77737 1118 329 aa, chain + ## HITS:1 COG:SA1226 KEGG:ns NR:ns ## COG: SA1226 COG0136 # Protein_GI_number: 15926974 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Staphylococcus aureus N315 # 1 328 1 328 329 573 85.0 1e-163 MTRLAVAGATGLVGTKMLETLDRKQIPFDELVLFSSARSAGKKVEFQGQSYTVQELTDEA ASEHFDYVLMSAGGSTSEHFAPLFEAAGAIVIDNSSQWRMAEDVDLIVPEVNEPQFTRGI IANPNCSTIQSVVPLKILQDAYGLKRVAYTTYQAVSGSGVKGKRDLTEGANGKKPEAYPY PIYNNVLPHIDVFLENGYTKEEQKMIDETKKILNDQNLKVTATCVRVPVQDSHSIEIDVT LNQDTTVKEIQELFAQDQRVVLVDNPSKNEYPLAIHSTGKDEVFIGRIRRDDSLENTFHV WCTSDNLLKGAALNAVQVLEQILTLKGAR >gi|224999886|gb|ACJC01000114.1| GENE 67 77739 - 78623 800 294 aa, chain + ## HITS:1 COG:SA1227 KEGG:ns NR:ns ## COG: SA1227 COG0329 # Protein_GI_number: 15926975 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Staphylococcus aureus N315 # 1 293 1 293 295 419 73.0 1e-117 MTHMFEGVGVALATPFTNNEVDFDALERHVQFLLDNNIQAIIVNGTTAESPTLTDEEKEK VLATVVKLVNHNVPVIAGTGTNNTYKSIQASIRAKEIGADAVMLITPYYNKTNQRGLIQH FETIANEVKLPVILYNVPSRTNMTIEPETVEILSHNPYIVALKDATNDFEYFDEVKQRIN ANEFALYSGNDDNVVKFYQRGGNGVISVIANVIPQEFQYLYDNRQNETDITNYFKPIEKL LEALSLDVNPIPIKVLTAYLGYGHYEVRLPLVPLEEAQCKQVERAFEQFKAGEQ >gi|224999886|gb|ACJC01000114.1| GENE 68 78623 - 79345 782 240 aa, chain + ## HITS:1 COG:SA1228 KEGG:ns NR:ns ## COG: SA1228 COG0289 # Protein_GI_number: 15926976 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Staphylococcus aureus N315 # 1 240 1 240 240 377 77.0 1e-105 MNILLIGYGAMNQKVARLAEDKGHEIVGVIDRTPKSSTPYSQYKHISECKEADVAIDFSN PELLFPLLEEQFNLPLVIATTGEKETLIQKLETLSQRTPVFFSANMSYGVHALTKILETA VPLLEDFDIELTEAHHNKKVDAPSGTLVKLYDVIKELRDNISPVYDRHEKTEKRTHDEIG IHAVRGGTIVGEHDILFAGTDETITISHRAQSKDIFANGAIGAAEKLIHKNPGFYTFNNL >gi|224999886|gb|ACJC01000114.1| GENE 69 79367 - 80089 1076 240 aa, chain + ## HITS:1 COG:SA1229 KEGG:ns NR:ns ## COG: SA1229 COG2171 # Protein_GI_number: 15926977 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Staphylococcus aureus N315 # 1 239 1 239 239 390 87.0 1e-108 MVQHLSAQEIIQYISDAKKSTPLKVYVNGHFENVTFPESFKVFGSEHSKVIFCEADEWKQ FYQKNHSLITELEIEMDRRNSAIPLKDLTNTNARIEPGAFIREQAIIEDGAVVMMGATIN IGAIVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIEPPSASPVVIEDNVLIGANAV ILEGVRVGAGAIVAAGAIVTQDVPAGAVVAGTPAKVIKQTSEVQDSKREIVSALRKLNNE >gi|224999886|gb|ACJC01000114.1| GENE 70 80246 - 81397 1174 383 aa, chain + ## HITS:1 COG:SA1230 KEGG:ns NR:ns ## COG: SA1230 COG1473 # Protein_GI_number: 15926978 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 1 383 1 383 383 629 79.0 1e-180 MNELEFVTLHRRHLHQYPELSLHEFETTSYITSFLEDLGVPYDRPLKTGVIAYLEGNSHH TIAFRADIDALPIYEENDIDFKSKNDHVMHACGHDGHTTALMLFVKRCKALYDKSELPHN VVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITASATEY RFFLKGLSSHVADKEQGHSCGEGLQHVLSQIGQIQQFHLNGLKRNIIHMGHFEAGEAINT VPSHGYLEGTIRTYDTEDLAIVKHQMHKIAESVQLLFNVECEVKFEEGYPPTMNHPQLRQ AVENAIEGANLEVVEKKLPFLFGEDFSFYGQQLAPSYFVFVGTQNKEKGFVTGLHTAHLN FDEKILIDVVNYYEHLLRNYKEV >gi|224999886|gb|ACJC01000114.1| GENE 71 81403 - 82476 953 357 aa, chain + ## HITS:1 COG:SA1231 KEGG:ns NR:ns ## COG: SA1231 COG0787 # Protein_GI_number: 15926979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Staphylococcus aureus N315 # 1 357 1 357 361 537 73.0 1e-152 MTAIWSLDTEAFYQNAVKVKNNEPIMAVVKNNAYHYGLEFAVKTFLKADINTFSTTSLNE AIRVRKIAPEATIFLMNPVYDFDLVKRYDIHMTLPSLNYYYKYKQDLKGIHVHLEYENLL HRSGFRNIEEIREVLKDHDQNNQDKMIISGIWTHFGYADEFDVDEYKMERDAWLNLINTL LNENYHFDMIHSQNSASYFRENQMLLPHHTHARVGIALYGSRPYSLINEERITQSLTVKG NVIQVRDVNKGDYCGYSFAFEVKNDHTQLAVVDIGYGDGILKSRAKHEAIINGKRYPIRA LMMSHMFIEVDDEVHAQDEVILYNKDIRIDEFTFKGVGANSEQLSAMNHDSLIKEYL >gi|224999886|gb|ACJC01000114.1| GENE 72 82477 - 83742 1412 421 aa, chain + ## HITS:1 COG:SA1232 KEGG:ns NR:ns ## COG: SA1232 COG0019 # Protein_GI_number: 15926980 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Staphylococcus aureus N315 # 1 421 1 421 421 676 80.0 0 MVVNYNDNGELTMGGTSLKTIAQSFGTPSIVYDEDQIRNQIRRYHKAFEASGLSYNISYA SKAFTCIQMVKLIDEENLQLDVVSEGELYTALEAGFDSKRIHFHGNNKTKREIQYALDNQ IGYFVVDTLEEIDLIDKYADSNVDVVLRVNPGVEAHTHEFIQTGQEDSKFGLSIKHGLAL NAVNKVKATKHLQLKGIHFHIGSQIEGTEAMIKTAKIVLNWLASERIEVSLLNIGGGFGI KYVEGDESFPIEQGISEITEAIKETAQALQYNIPEIGIEPGRSIVGEAGITLYEVGTIKD IPGVNKYVSVDGGMSDHIRTALYGAQYEALLVNRNEKANESVTIAGKLCESGDIIVRDAQ LPSSVHRGDYLAVLSTGAYHYSMASNYNQMQKPSVFFLKDGKAREVIKRQSLRQLIINDT K >gi|224999886|gb|ACJC01000114.1| GENE 73 84493 - 84693 293 66 aa, chain - ## HITS:1 COG:SA1234 KEGG:ns NR:ns ## COG: SA1234 COG1278 # Protein_GI_number: 15926982 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Staphylococcus aureus N315 # 1 66 1 66 66 109 96.0 1e-24 MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQEGYKSLEEGQSVEFEVVEGDRGPQA ANVVKL >gi|224999886|gb|ACJC01000114.1| GENE 74 84874 - 85182 259 102 aa, chain - ## HITS:1 COG:SA1235 KEGG:ns NR:ns ## COG: SA1235 COG4699 # Protein_GI_number: 15926983 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 1 102 102 129 66.0 1e-30 MWTVVKIRADYEGWWLFDDWPQKIVEQSEFTTYEQMMEYYINVLNHSKKCYDNYVVGKYN IHAFYNNCDLNFCEDCEEDLQIFYSFIILKNNEVYFNLPKID >gi|224999886|gb|ACJC01000114.1| GENE 75 85341 - 85610 387 89 aa, chain + ## HITS:1 COG:SA1236 KEGG:ns NR:ns ## COG: SA1236 COG1254 # Protein_GI_number: 15926984 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Staphylococcus aureus N315 # 1 89 1 89 89 112 62.0 2e-25 MQRKHIQVFGTVQGVGFRFYTQRIAHQFNIKGTVQNVEDYVDIYAQGDDTELEQFIDSVI QGASPASQVSNYNIEELDLDESLSEFKTI >gi|224999886|gb|ACJC01000114.1| GENE 76 85758 - 86276 500 172 aa, chain + ## HITS:1 COG:SA1237 KEGG:ns NR:ns ## COG: SA1237 COG4915 # Protein_GI_number: 15926985 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Staphylococcus aureus N315 # 1 171 37 207 207 232 69.0 3e-61 MLISFGSFIASYFPTQRLTSRKYLNEIGLSRRDYRYVQSQLHHAHTKIRTILKSFINIRS IKDFRQVNDIYRISRSIHTSIKQRPAMFFKVESFFYSHLDNALNLVDSYTRLARMPRKSQ DEKLKLEQTRITLDEIKRTLIADLKRLNEEDYERLDVEIELNRLEQQRRHNN >gi|224999886|gb|ACJC01000114.1| GENE 77 86299 - 87429 1059 376 aa, chain + ## HITS:1 COG:SA1238 KEGG:ns NR:ns ## COG: SA1238 COG3853 # Protein_GI_number: 15926986 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Staphylococcus aureus N315 # 1 375 1 372 378 381 66.0 1e-105 MVSEQSSNRSHPLDYYMDNQSTDHHTIAEDLEMQLTENDKQRIKSISEQIEPLNHEGLLK YGANLQQKMSHFSHQILDDVQSKDMGPVGETLSQLMGKLKSVNPNDINPEKQSRLKRLFK RTKASINEVFSRMQSVSSQIDRITIQLEKHKDQLTKDVEFLDQLYQENKTYFDNVSLYIL AAQKKKKEILTETIPQLREKAHQTGNQMDIQATADMEQFVDRLDKRIYDLQLSRQIAIQT APQIRMIQNVNQALAEKIQSSILTSIPLWKNQMAIALTLMRQRNAVSAQRSVTDTTNELL TQNASMLKKNAIETAAENERGIVDIETLKTTQNDIIETIEQTLQIQEDGRQKRQVAEKEL NELEQDLKQHLLSMRK >gi|224999886|gb|ACJC01000114.1| GENE 78 87505 - 88848 1394 447 aa, chain - ## HITS:1 COG:SA1239 KEGG:ns NR:ns ## COG: SA1239 COG1114 # Protein_GI_number: 15926987 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 447 1 447 447 583 74.0 1e-166 MNKNTWIIGFTLFAMFFGAGNLIFPTQLGLESGHFFWPAILAFALTGIGLPLLGVVVGAL DKHGYIGSFNKISPRFSLIFLIIIYLTIGPLFAIPRTASTSFEMTVTPIAHNSGNLALFI FTVIYFLIVLYLCLNPNKMIDRIGSLLTPLLLITIVAMIIKGFVDFGGHSSNYGMTNAYH SNLSGFSQGFTQGYLTMDAIASIAFSMIVVNAIKTTGIQHADKIFKQTIIAGLIAAIALV FIYISLGYIGNHINIPSDTLKELKAKDQNIGTYLLTTMATKGFGTFGKYLLGIIVSLACL TTACGLIVSVSEYFHRIIPKIPYKVFVVFFILVSFILANQGLNSVIKMSVPVLSVIYPVA ITVILLILIARFIPTKRIAQQIPLIIVAIESILSLITTQGWIRISLIDSLPLKEYSLEWF PIAVVATLVGYMISYFVKQSNIVYQKE >gi|224999886|gb|ACJC01000114.1| GENE 79 89035 - 90924 1958 629 aa, chain - ## HITS:1 COG:SA1240 KEGG:ns NR:ns ## COG: SA1240 COG4548 # Protein_GI_number: 15926988 # Func_class: P Inorganic ion transport and metabolism # Function: Nitric oxide reductase activation protein # Organism: Staphylococcus aureus N315 # 1 616 1 615 628 897 76.0 0 MSDRFIKFNDEQLDAKQVMMLQDLARLLLKNEQTQVKIQKFPYYNPYSNTLIASWFWSHR PKHIEQAGLKTDVLLATYGYLNMDLSIINQVLHNNDFEHPKFFHQLFKLLEDVRIFEHIR QQRPSTTKMIDLRIETRLSFTESQINFYKTKTVYTDLLFLYLEHAFLSQNFFNIPSIHPA FDDILVHMYQYLPNIFQNHTSEDNMYLAERIMYQVDDLLKEDMLNEYYYLPQKLYEDIYA DSFEDLKRTDASNTDGKDNHQTEEDVETAEAESKAADSESKGGAYLEMELHEGENSEVMA DNDTAREGDSTDDMTDMMTKKGKGSENTLDHDEGGFTGQNQTFALKGINKDVSIEWNIPD ITPQNVIDYQYSKNDVQFEIKDLIQIIEKTIDREHEDERHNLTKGRLQKDLINWFIDDQF KLFYKKQDLSKTFDATFTLLIDASASMHDKMDETIKGVVLFHETLKSLNIKHEILAFNED AFEADERQQPNIIDEIINYNYSIFEKEGPRIMTLEPQDDNRDGVAIRIASERLLQRSHEQ RFLIVFSDGEPSAFNYSQDGILDTYEAVERARKFGIEVFNVFLSQEPITEDIEQTIHNIY GQFAIFVEGVEHLPSHLSPLLKKLLLKSL >gi|224999886|gb|ACJC01000114.1| GENE 80 90937 - 91728 964 263 aa, chain - ## HITS:1 COG:SA1241 KEGG:ns NR:ns ## COG: SA1241 COG0714 # Protein_GI_number: 15926989 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Staphylococcus aureus N315 # 6 263 6 263 263 434 87.0 1e-122 MVQTVYKNSDQTVFEDAKALFQLNKNILLKGPTGSGKTKLAETLSHVMNLPMHQVNCSVD LDTESLLGFKTIQTNEEGHQEIVFIDGPVIKAMKEGHILYIDEINMAKPETLPILNGVLD YRRQLTNPYTGEVIKAAPGFNVIAAINEGYVGTLPMNEALKNRFIVIEVDYIDGDILKTV IKEQSKLQDEQLIQHIIKFNEDLRTMTKQGQISEEAASIRALIDLSDLATVMPIERAVQR TIIDKLEDEREQQAILNAIELNF >gi|224999886|gb|ACJC01000114.1| GENE 81 91906 - 92109 320 67 aa, chain - ## HITS:1 COG:no KEGG:SERP0980 NR:ns ## KEGG: SERP0980 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 67 1 67 67 115 100.0 3e-25 MLHETWKERTPIKKVEVTNTDAKKFTVADMLTIGKQYDVINETEEYYQIIDNSGLVGGYY KDYFKEI >gi|224999886|gb|ACJC01000114.1| GENE 82 92134 - 92943 887 269 aa, chain - ## HITS:1 COG:SA1243 KEGG:ns NR:ns ## COG: SA1243 COG0346 # Protein_GI_number: 15926991 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 1 269 1 269 269 293 54.0 2e-79 MSGLRSVTLGTNDLSKTKELFNHIIGLQHSTKNEHAIRFGDANLSPGTRVHFVEVPEEDY KNPHIDSVGLRTPSDSGLVEYQTIFDKFNISYSSITELNGLKHFTFKDHNQQKFDIYSNE LNTGIGLGMPTFDSPVNPLHQVQGLGPVIIKVNELSVTTSILTQVFQLDLFAEYLTHEDA QQPIQVFRIGEGGLGGEIHLFESDEDIQMNTHGPIEQVEFSTSDTQLYLQAKNRLDEIGV PYQTLEQDTSESLRITENSGISFIYTLEK >gi|224999886|gb|ACJC01000114.1| GENE 83 93143 - 93316 235 57 aa, chain + ## HITS:1 COG:no KEGG:SE1095 NR:ns ## KEGG: SE1095 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 57 3 59 59 66 100.0 4e-10 MSNLWIIFAVTVLIAVYSAIEVFTNLNHKQQPRFKYFTIAFVVFIILAIIEVIFLAQ >gi|224999886|gb|ACJC01000114.1| GENE 84 93448 - 93858 169 136 aa, chain - ## HITS:1 COG:no KEGG:SERP0983 NR:ns ## KEGG: SERP0983 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 136 98 233 233 164 100.0 1e-39 MLILLSLFYPLILNRFSEDITLNQYIIALTLHIVVSIIGMLISTLIHNINFLSYKYTFLF IALIIIVSLSRPSLVQSYSLLNYILWAVPPIGDLITLFKSDTPDNAMLLIKTFTIFIYII ILIGLNIMIFTKSDQK >gi|224999886|gb|ACJC01000114.1| GENE 85 94146 - 94976 611 276 aa, chain - ## HITS:1 COG:MJ1023 KEGG:ns NR:ns ## COG: MJ1023 COG4152 # Protein_GI_number: 15669212 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Methanococcus jannaschii # 10 197 9 199 262 105 34.0 1e-22 MSLSAIEGVHITKQFNKQNILNDLNFRVPKHSITLVNGKNGSGKSITLKIIAGLITQFDG SLLINGKISYAVDIFPNNLSLTINEYFEFLLKVHSNNQTKVKLNYLINHLKLSSFLNQKL KDCSKGTKQKVNVIQCLIKNADIYILDEPFSGLDQNATKFLINYLEWLKLSSTIILTSHE LNQLINITTHILNIETGIFYINDINKNHLVVTSKLIVVKNDSVTINLLKEIQNQKITYTD NNKISIQTNQNDLNLVLKQLIVHNCEILEIKDVKNF >gi|224999886|gb|ACJC01000114.1| GENE 86 95118 - 96380 1862 420 aa, chain - ## HITS:1 COG:SA1244 KEGG:ns NR:ns ## COG: SA1244 COG0508 # Protein_GI_number: 15926992 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 420 1 422 422 578 79.0 1e-165 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLA EEGDTVEVGQAVAVVGEGQVNTSNDSSNESSQKDEAKEKETPKQSNPNSSESENTQDNSQ QRINATPSARRHARKNGVDLSEVSGKGNDVLRKDDVENSQKSSSQTAKSESKSQNSGSKQ TNNNPSKPVIREKMSRRKKTAAKKLLEVSNQTAMLTTFNEVDMTNVMDLRKRKKEQFIKD HDGTKLGFMSFFTKAAVAALKKYPEVNAEIDGDDMITKQFYDIGIAVSTDDGLLVPFVRD CDKKNFAEIEQEIANLAVKARDKKLGLDDMVNGSFTITNGGIFGSMMSTPIINGNQAAIL GMHSIITRPIAVDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKTIKELIENPEDLLLES >gi|224999886|gb|ACJC01000114.1| GENE 87 96399 - 99203 2815 934 aa, chain - ## HITS:1 COG:SA1245 KEGG:ns NR:ns ## COG: SA1245 COG0567 # Protein_GI_number: 15926993 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 934 1 909 910 1572 82.0 0 MTKNKKEFTEAPVNFGANLGLMLDLYDDYLQDPSSVPEDLQVLFSTIKTGEAHIEAKPTT DGGGSQAGDSTIKRVMRLIDNIRQYGHLKADIYPVNPPERQNVPKLEIEDFDLDKETLEK ISSGIVSEHFKDIYDNAYDAIVRMERRYKGPIAFEYTHINNNKERVWLKRRIETPYKASL NDNQKKELFKKLAHVEGFEKYLHKNFVGAKRFSIEGVDTLVPMLQHTITLAGNEGIKNIQ IGMAHRGRLNVLTHVLEKPYEMMISEFMHTDPMKFLPEDGSLELTSGWTSDVKYHLGGVK TTNSYGIEQRISLANNPSHLEIVAPVVAGKTRAAQDNTHQVGGPSTDFHKAMPIIIHGDA AYPGQGINFETMNLGSLKGYSTGGSLHIITNNRIGFTTEPFDGRSTTYSSDVAKGYDVPI LHVNADDVEATIEAIEIAMEFRKEFHKDVVIDLVGYRRYGHNEMDEPSITNPVPYQNIRK HDSVEILYGKKLVDEGIISEDEMNEVIDSVQKEMRTAHDKIDKNDKMNNPDMEKPESLQL PLQSDTKDFSFDHLKEINDAMLDYPKDFHVLKKLNKVLEKRREPFEKEGGLVDWAQAEQL AFATILQDGTSIRLTGQDSERGTFSHRHAVLHDEENGNTFTPLHHVPQQQATFDIHNSPL SEAAVVGFEYGYNVENKGNFNIWEAQYGDFSNMSQMMFDNFLSSSRAKWGERSGLTLFLP HAFEGQGPEHSSARLERFLQLAAENNSTVVNLSSASNYFHLLRAQAASLDTLEMRPLIVM SPKSLLRNKTVAKPIDEFTSGGFKPIITEDIDEQKVKKVILASGKMYIDLKEYLAKNPND SILLIAVERLYPFPEEEIKEVLKSLPHLENVSWVQEEPKNQGAWLFVYPYLKALVANKYD LTYHGRIQRAAPAEGDGEIHKLVQTKIIESSINN >gi|224999886|gb|ACJC01000114.1| GENE 88 99615 - 100985 905 456 aa, chain - ## HITS:1 COG:SA1246 KEGG:ns NR:ns ## COG: SA1246 COG0642 # Protein_GI_number: 15926994 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 2 452 1 451 451 590 69.0 1e-168 MIKRQKLKYKWMLITTLITFTTILLFCLIIIFFLKDTLRSSEIDEAERSSNDIANLFHSK SLSDISALDLNASLENFQEILIYDDKGRKLIQTSNDNTLAYDNKIDFKHPERIHIHRSHG INYLVITEPIRSKEFSGYSVLVHSLQNYDNLVKSLYIVALAFGLIATIITAGVSYIFSSQ ITKPIVTMSNKMNQIRRDGFQNKLELTTNYEETDNLIDTFNEMMYQIEESFNQQRQFVED ASHELRTPLQIIQGHLNLIQRWGKKDPAVLEESLNISIEEVNRITKLVEELLLLTKDRVN HNVLECENVDINSEIQSRVKSLQHLHPDYTFETHLATKPIQLKINRHQFEQLLLIFIDNA MKYDTEHKHIKIVTQLKNKMIMIDITDHGMGIPKADLEFIFDRFYRVDKSRARSQGGNGL GLSIAEKIVQLNGGMIQVESELQNYTTFKISFPVLN >gi|224999886|gb|ACJC01000114.1| GENE 89 100982 - 101641 621 219 aa, chain - ## HITS:1 COG:L0131 KEGG:ns NR:ns ## COG: L0131 COG0745 # Protein_GI_number: 15673576 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 4 219 6 227 230 214 51.0 7e-56 MTNILIVEDEQNLARFIELELTHENYTVDIENDGKAGLDKALSKPYDLYILDLMLPNING LEICRQIRQKTTTPIIIITAKSETYDKVAGLDYGADDYIVKPFDIEELLARIRAVLRRQP DKDVLDINGIIIDKDAFKVTVNGHQLELTKTEYDLLYVLAENRNHVMQREQILDHVWGYN SEVETNVVDVYIRYLRNKLKPFNKEKSIETVRGVGYVIR >gi|224999886|gb|ACJC01000114.1| GENE 90 102201 - 102968 684 255 aa, chain - ## HITS:1 COG:TM1069 KEGG:ns NR:ns ## COG: TM1069 COG1349 # Protein_GI_number: 15643827 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Thermotoga maritima # 4 250 2 246 252 107 30.0 2e-23 MYKRNERLNLIRKRVDQYGQVAVKDLAIFLQVTPETVRKDLETLENDKLITRTHGGAIQY NHINKEKSYANKWQKQSQVKERIAKKAALQIQSGEIIVIDGGTTTGRIPQYLNDITQTTI VTNSLKIADELNRAIEEQRIQAEVIMLAGKTNTEQDVVRGHMTNELLQRFKFDKAFISCG SFDTSDCYEFDLEEAHASHIMIQKSQLSYLLADSSKRDAHASYRIDGFSEIDYMISDYAK PQNIEYFNQKHWLQI >gi|224999886|gb|ACJC01000114.1| GENE 91 102975 - 104300 932 441 aa, chain - ## HITS:1 COG:BS_yisQ KEGG:ns NR:ns ## COG: BS_yisQ COG0534 # Protein_GI_number: 16078145 # Func_class: V Defense mechanisms # Function: Na+-driven multidrug efflux pump # Organism: Bacillus subtilis # 10 432 23 449 455 164 29.0 4e-40 MIVSKRTFRSLYIPILIEQLFILIMGQADTLMLNSYSTDAVAASGMISQILMLITFLITI IHVGTNIRIVHLKEHQPSSISQEIYHNLLFNSIVSIVFTIVIGIAFELILRLFQVPQDIF KLTYQFGMIILSVLTLTTCHMYIGTVLRVMNHASSATRITIISNVTNIILNGIVLFIIPE YVGNPVLGVAVVTAFSRLLGCTLALIALIQIFRPFKHYFKLSWKKIYQVSTLGIPTAGEQ ISYNFAQTFTTAFIAMLGTQVIAAKSVSTVLSGLSFSCAMAFSAASQIYLGKFISRRRYR TLKKVVIKSIWFNITQSFMIMTCVFIGFIVCGRWITHDLQTYHLIIYYLVILFGLEPIRA INNLIVDLLNVTGDVRYPVTVSVVTTWLLLLPGSYLLGIHWRLGYTGIILVSIADEALRF IIMYLRWRNNRWQARMKQIGV >gi|224999886|gb|ACJC01000114.1| GENE 92 104287 - 105141 1004 284 aa, chain - ## HITS:1 COG:CAC1961 KEGG:ns NR:ns ## COG: CAC1961 COG1409 # Protein_GI_number: 15895233 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Clostridium acetobutylicum # 4 283 46 321 324 114 31.0 2e-25 MTTILQLSDLHIGPHNDEKDQKTYDLIHHMMTHYQPDITVLTGDQIWSEGVIDSGRVYKK LMEYLNRYDTQIATTFGNHDTEGHLKRSDLRAIEDQYSTNYVQKNHSLIVDDKEAYTIEV VNNDTVTHVLYVIDGGDYNPFGIGDYDFIRPEHVNWLRETHQAYQTQFQHNFQHNLLFTH IPLQEYREVENIGEYHGIFNEPIACSKINSGLFSQMLLNGDIEGMFCGHDHDNDFTINLY GIRLSFGRVGGYNTYGDLQRGARLIELQPDAIYKSKVLEFDDRF >gi|224999886|gb|ACJC01000114.1| GENE 93 105155 - 106051 793 298 aa, chain - ## HITS:1 COG:BH1912 KEGG:ns NR:ns ## COG: BH1912 COG0395 # Protein_GI_number: 15614475 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, permease component # Organism: Bacillus halodurans # 23 297 21 296 297 212 40.0 6e-55 MKVSQDKSALVIRIISLIIIIGLVITIILPMINIFALAFNSGVDAQKGGITFYPRKFSLD NFKEIFKQGTLLNALFISIAKTVIGTILSVILTAMAAYVLTIKSLPFRRIISFFLVFTML FSVGVVPLYILLNQLHLTDTFWVYILPSLYSVYNILIMRTFFNQLPSSVIETARVDGCND FQIFWKIVLPMSKPVVASITLFNAVSQWNDWFTGAFFVRNPNLKPLATVLQDMLTKQAAI ADALKQKSGSYAMLDKLTITGDSMQMAMIVLLTIPVLFLFPFVQKHFVKGITIGSTKE >gi|224999886|gb|ACJC01000114.1| GENE 94 106067 - 107755 1928 562 aa, chain - ## HITS:1 COG:AGl3560 KEGG:ns NR:ns ## COG: AGl3560 COG1653 # Protein_GI_number: 15891902 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport system, periplasmic component # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 190 438 166 421 522 66 25.0 2e-10 MFRKSMLILIIAVILFVTACSKDKTQDEAKRKADAKGKPDTWIADRKLKGLVFQSDNDAS PKMNKEVAQELKKRTGITLELQTVSNEDSTEALTSGLASGDLPDFIVYYLDDSGRPEMKV LNKAAKQGRLTDLTKMLKNTKIYSKYFKKGYLPKDTKDNIMFNKEQDGTYLVHMGINRHP GQEERRTVGGPYVRKDIMDKLHIDPTSIKTSKDVEKLAEKMKEHHFKDDNGKEITPIGPT AWGGDDRTKFYNDLVWTGQSDEKFLNKGKKIIHESQTEYPLKRVHYVKDLMKKGLMTKEF YTMEENKAKEGLVNGSWGIVSDLHNYVTENQSMKYVPLGPLNTVKGKFRVEKPYKSGANG WAVPSTTEHPEDVVKLADFLASRKGKLLGQYGIKGRDYTLNKKGNPHVKPEVLKEVENNP DEAKKRGFRGAGSYWADHLGYTDIDNKADFGETEYGDNTKTKKTTPEKIADMWHYDERQK HAKIVNGLTVKSFLSKYEYGEDLEIALDDYSDAIKRAYYSQSDKEAKQIIDSAKQRLEEA GLNQFERYVENQRDKKGTQIIY >gi|224999886|gb|ACJC01000114.1| GENE 95 107767 - 108723 691 318 aa, chain - ## HITS:1 COG:BH0484 KEGG:ns NR:ns ## COG: BH0484 COG4209 # Protein_GI_number: 15613047 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type polysaccharide transport system, permease component # Organism: Bacillus halodurans # 18 318 29 325 325 235 42.0 9e-62 MSKNKKQSLQSAHQKPLLKRMWEHKVLYLMILPCLLFFLIFNYIPMTSLVLAFKDFRFDT GIIGGDWKGLYYFKRFFSDPRCIQIIMNTLIISGMKLILALPFPIILAIMFNEIKDSKLG KIRGLFQGVLYIPHFLSWVVVIGIFKKLLAPDDGLMNQLIHQFGGDGSTYFMMNPEYFHT IMFSSYIWKNVGWDSIIYFAAIMSINPEIYESATIDGANRFKQIIHITLPMLTPTIVILF IISLGDILKAGFDQIYLLKTPGNANVSEILDTFVIRTGIEQGDFSYAIAISLLQGVIGLI AVVIINKFADKKLDTSLY >gi|224999886|gb|ACJC01000114.1| GENE 96 108720 - 109811 997 363 aa, chain - ## HITS:1 COG:BH1140 KEGG:ns NR:ns ## COG: BH1140 COG3839 # Protein_GI_number: 15613703 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type sugar transport systems, ATPase components # Organism: Bacillus halodurans # 2 358 4 365 365 381 54.0 1e-105 MIQIKDLNKVYDNGSHAVKDFNLDIEDNEFVVFVGPSGCGKSTTLRMIAGLEDVSKGTIS INDQVINDLQPKDRKIAMVFQNYALYPHMTVYKNLAFGLKMRGIKKKIYDEKIQHAAQIL EIENLLDRKPKALSGGQRQRVALGRAIVREAQIFLMDEPLSNLDAKLRSNMRSEIIKIHK QMKATTIYVTHDQTEAMTMASRIVILKQGEIQQIGTPEEIYRHPVNEFVATFIGSPSMNM VPMTYNMDAWYFDGQKVADATLLQLASHAQYRLGIRPEDLHLVNDNEISNYPIQLSQFTV DLVELTGSYKLLHCHHNEHKIIAAVDSNLDFELGQTVSFGIKTEDAHFFDSDSGERVQEE VLS >gi|224999886|gb|ACJC01000114.1| GENE 97 110162 - 110776 447 204 aa, chain - ## HITS:1 COG:SA1250 KEGG:ns NR:ns ## COG: SA1250 COG0671 # Protein_GI_number: 15926998 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 1 202 1 202 204 305 82.0 5e-83 MNRWKRISLLIVFTLIFGIIAFFHESRLGKWIDNEVYEFIYSSESFITTSIMLGATKIGE VWAMVALSLLLVAYLMLKRFKIEALFFVIVMSLSSTLNPLLKNIFDRERPTLLRLIDISG FSFPSGHAMGSTSFFGSAIYVINRHDSGISKGVLIGLCALFILLISTSRVYLGVHYPTDI IAGIIGGAFCIVLSTLILKKQLAV >gi|224999886|gb|ACJC01000114.1| GENE 98 110789 - 111862 1295 357 aa, chain - ## HITS:1 COG:SA1251 KEGG:ns NR:ns ## COG: SA1251 COG0707 # Protein_GI_number: 15926999 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 555 79.0 1e-158 MTKIAYTGGGTVGHVSVNLSLIPTSIEKGHEAFYIGSKHGIEREMIESQLPNIQYYPISS GKLRRYLSFENAKDVFKVLKGILDARKILKKQKPDLLFSKGGFVSVPVVIAARSLKIPTI IHESDLTPGLANKIALKFAKKIYTTFEDTLAYLPKDKADFVGATVREDLKQGNKERGYQL TDFDKNKKVLLVMGGSLGSKKLNNIIRQNIEALLHDYQIIHLTGKGLVDDSINKKGYVQF EFVKDDLTDLLAITDTVVSRAGSNAIYEFLTLRIPMLLIPLGLDQSRGDQIDNAKNFESK GYGRHIPEDQLTEVNLLQELNDIELHRESIIKQMETYQESYTKEDLFDKIIHDALNK >gi|224999886|gb|ACJC01000114.1| GENE 99 111880 - 112383 633 167 aa, chain - ## HITS:1 COG:SA1252 KEGG:ns NR:ns ## COG: SA1252 COG0454 # Protein_GI_number: 15927000 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 167 1 167 169 215 65.0 4e-56 MIRLATKDDLLSITQLVKEAKQIMEEFNNNQWDDEYPAKEHFEEDIENKTLYVLDVDHTI YGFIVIDQNQSEWYDDIDWPVNRNGAYVIHRLAGSKQYKGAATELFQFAMDLANEHDIHV ILTDTFALNKPAQGLFEKFGFTKVDEIEIDYHPFDRGAPFYAYYKNI >gi|224999886|gb|ACJC01000114.1| GENE 100 112718 - 114193 1421 491 aa, chain - ## HITS:1 COG:SA1253 KEGG:ns NR:ns ## COG: SA1253 COG0793 # Protein_GI_number: 15927001 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Staphylococcus aureus N315 # 6 491 4 496 496 600 69.0 1e-171 MNDHQKNHATSQDDNTKSTPSKNSKQIKIKLWHFILIILGIILLTSIITVVSTILISHQK SGLNKEQRANLKKIEYVYQTLNKDYYKKQSSDKLTQSAINGMVKELKDPYSEYMTAEETK QFNEGVSGDFVGIGAEMQKKNEQISVTSPMKDSPAEKAGIQPKDIVTQVNHHSVVGKPLD QVVKMVRGKKGTYVTLTIKRGSQEKDIKIKRDTIHVKSVEYEKKDNVGVLTINKFQSNTS GELKSAIIKAHKHGVRHIILDLRNNPGGLLDEAVKMANIFIDKGNTVVQLEKGKDKEELK TSNQALKQAKDMKVSILVNEGSASASEVFTGAMKDYHKAKVYGSKTFGKGIVQTTREFSD GSLIKYTEMKWLTPDGHYIHGKGIRPDVSISTPKYQSLNVIPDNKTYHQGEKDKNVKTMK IGLKALGYQIDNETNIFDEQLESAIKTFQQDNNLKVNGNFDKKTNDKFTEKLVEKANKKD TVLNDLLNKLK >gi|224999886|gb|ACJC01000114.1| GENE 101 114538 - 114729 215 63 aa, chain - ## HITS:1 COG:SA1254 KEGG:ns NR:ns ## COG: SA1254 COG4479 # Protein_GI_number: 15927002 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 63 11 73 73 91 80.0 3e-19 MTVRGRKDDKGVFAEQIFEDLAFPKHEDDFNTLSEYIETHSEFTLPMSVFDDLYDDYTEW LKF >gi|224999886|gb|ACJC01000114.1| GENE 102 114762 - 115262 774 166 aa, chain - ## HITS:1 COG:SA1255 KEGG:ns NR:ns ## COG: SA1255 COG2190 # Protein_GI_number: 15927003 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Staphylococcus aureus N315 # 1 166 1 166 166 263 82.0 9e-71 MFKKLFGKGKEIDKNIKIYAPLTGEYVKIEDIPDPVFAQKMMGEGFGINPTEGEVVSPIE GKVDNVFPTKHAVGLKAENGLELLVHIGLDTVQLDGKGFEVLVESGDDIKIGDPLIRFDL EYINNNAKSIISPIIITNSDQTESIHIEDVQAVVKGETQVIDVTVS >gi|224999886|gb|ACJC01000114.1| GENE 103 115275 - 115703 338 142 aa, chain - ## HITS:1 COG:SA1256 KEGG:ns NR:ns ## COG: SA1256 COG0229 # Protein_GI_number: 15927004 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 1 142 1 142 142 253 85.0 1e-67 MIKKNKDELNDIEYLVTQENGTEPPFQNEYWNHFEKGIYVDKLSGKPLFTSEDKFESNCG WPSFSKALNDDEIVELVDKSFGMIRTEVRSEKANSHLGHVFNDGPKEKGGLRYCINSAAI QFIPYDKLEELGYGDLIKHFKK >gi|224999886|gb|ACJC01000114.1| GENE 104 115696 - 116223 654 175 aa, chain - ## HITS:1 COG:SA1257 KEGG:ns NR:ns ## COG: SA1257 COG0225 # Protein_GI_number: 15927005 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 3 174 5 176 177 304 88.0 5e-83 MTYATLAGGCFWCMVKPFTSYPGIKSVVSGYSGGHVENPTYEQVCTNQTGHVEAVQIEYD PDITTFENILDVYFKTFDPTDDGGQFFDRGESYQPVIFYHDENQRKAAELKKQQIDEEGI FKKPVITPIKPYKNFYPAEEYHQDYYKKNPTHYEQYQRGSGRKAFIESHWGSQND >gi|224999886|gb|ACJC01000114.1| GENE 105 116326 - 117174 932 282 aa, chain - ## HITS:1 COG:SA1258 KEGG:ns NR:ns ## COG: SA1258 COG1307 # Protein_GI_number: 15927006 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 278 1 278 279 387 75.0 1e-107 MAKQIIVTDSTSDLSHEYLKQHNIHVIPLSLTIDGKSYTDQVDISSSEYIDYIENDADVK TSQPPIGRFIETYEQLAQDDVEIISIHLSSGLSGTYNTAVQASHMVDGNITVIDSKSISF GLGYQIKQIVELISQGTSTEKIVEEMTQLRDNLQLFVVIGQLNQLIKGGRISKTKGLIGN IMKIKPIGTLRDGQLELVHNSRTQNSSVQYLKKEITDFVKDHKIKSIGIAHANVKDFVDK IKKSFTESFDFNQFDINVTTPVISTHTGQGAIGLVVLRDTLN >gi|224999886|gb|ACJC01000114.1| GENE 106 117184 - 117669 342 161 aa, chain - ## HITS:1 COG:SA1259 KEGG:ns NR:ns ## COG: SA1259 COG0262 # Protein_GI_number: 15927007 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Staphylococcus aureus N315 # 1 159 1 159 159 270 80.0 9e-73 MTLSIIVAHDKQRVIGYQNQLPWHLPNDLKHVKQLTTGNTLVMGRKNFNSIGKPLPNRRN VVLTNQASFHHEGVDVINSLDEIKELSGHVFIFGGQTLYEAMIDQVDDMYITVIDGKFQG DTFFPPYTFENWEVESSVEGQLDEKNTIPHTFLHLVRRKGE >gi|224999886|gb|ACJC01000114.1| GENE 107 117711 - 118667 950 318 aa, chain - ## HITS:1 COG:SA1260 KEGG:ns NR:ns ## COG: SA1260 COG0207 # Protein_GI_number: 15927008 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Staphylococcus aureus N315 # 1 318 1 318 318 583 85.0 1e-166 MYNPFDEAYHGLCEEILEIGNRRDDRTHTGTISKFGHQLRFDLTKGFPLLTTKKVSFKLV ATELLWFIKGDTNIQYLLKYNNNIWNEWAFENYVQSNDYHGPDMTDFGHRSQQDPEFNEQ YKEEMKKFKERILNDDAFAKKYGNLGNVYGKQWRDWEDKNGNHYDQLKSVIQQIKNNPNS RRHIVSAWNPTEIDSMALPPCHTMFQFYVQEGKLNCQLYQRSADIFLGVPFNIASYALLT HLVAKECGLEVGEFIHTFGDAHIYSNHMDAIHTQLSRESYLPPQLKINTDKSIFDINYED LELINYESHPAIKAPIAV >gi|224999886|gb|ACJC01000114.1| GENE 108 118989 - 119651 250 220 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 215 1 215 245 100 31 4e-20 MLEFKQVSKSFRDGNQIIQAVKPTDLKIIQGELIAIVGPSGSGKSTFLTMAGALQRPTSG NIYINNKNISILSEKHLSKIRINEIGFILQSTNLVPFLTIEQQFKLLGKYKKDTLSEDGY QKLVKQLNLSDITNQLPNQISGGQKQRVAIAKAIYTNPSIILADEPTASLDTNNAMAVMK ILQEQTKERNKTCVIVTHDERLTHFCDKTYFMEDGLLSLQ >gi|224999886|gb|ACJC01000114.1| GENE 109 119667 - 120716 802 349 aa, chain - ## HITS:1 COG:SA0296 KEGG:ns NR:ns ## COG: SA0296 COG0577 # Protein_GI_number: 15926009 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 349 1 349 349 451 66.0 1e-127 MFLAWNEIKRNKIKFSLVIGILVLISYLLFLLSGLANGLIKMNTEGIEKWNADAIILKKD ANQTVEQSLFNISKVQNTYEQSTTLKQQGVIISNHHHEENALLFGVTHKSFLIPPIIKGH QVESSNEVVIDQSLADKGFKIGDILSLSQSDEKLKVVGIVESAKYNASPVLFSNNKTIEK LNPKLSKDKTNAIVVKDSNWKNHKLNKDLESISISQFIKNLPGYKAQNLTLNFMIVFLFI ISATVIGVFLYVITLQKTHLFGVLKAQGFTNGYLAKMVFAQTFILSLIGTIIGFLLTLLT GTFLPSVVPIHFNLLTMLIYGIVLIIISLLGSLFSVLSIIKINPLKAIG >gi|224999886|gb|ACJC01000114.1| GENE 110 120926 - 121363 654 145 aa, chain - ## HITS:1 COG:no KEGG:SERP1006 NR:ns ## KEGG: SERP1006 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 145 1 145 145 276 100.0 2e-73 MNGYEAYMKELAQQMRAELTDNGFTSLETSDDVNQYMQNIDNDDTTFVVINSTCGCAAGL ARPAAVAVAEQNEVKPDHKVTVFAGQDKEATQTMRDYIQQVPSSPSYALFKGQHLVHFIP REHIEGRDINDIAMDLKDAFDDNCQ >gi|224999886|gb|ACJC01000114.1| GENE 111 121415 - 121675 281 86 aa, chain - ## HITS:1 COG:no KEGG:SERP1007 NR:ns ## KEGG: SERP1007 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 86 1 86 86 148 100.0 6e-35 MEIIAISETPNHNTMKVSLSEPRQDNSSTTYTAAQEGQPEFINRLFEIEGVKSIFYVLDF ISIDKEDNANWNELLPQIENTFAKSN >gi|224999886|gb|ACJC01000114.1| GENE 112 122133 - 122837 665 234 aa, chain + ## HITS:1 COG:SA1265 KEGG:ns NR:ns ## COG: SA1265 COG1738 # Protein_GI_number: 15927013 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 333 83.0 1e-91 MYNEIFGIASFIVTFALMVLMYRCFGKQGLIAWVAIGTIIANIQVIKAVHIFGITATLGN VMFASIYLATDILNDIYGRKVAKRAVWLGFSSTLVMIIVMQMSLHFIPAPVDNAQNSLKM IFDLVPRIAIGSIIAYIIGQHIDVFIFSMIKKIFSSDKTFIIRAYGSTILSSIIDTGLFV SIAFIGTMPGTAVFEIFITTYLLKLVSTIFNVPFGYIAKSLYRKGKIEQLDNGY >gi|224999886|gb|ACJC01000114.1| GENE 113 123163 - 123558 511 131 aa, chain + ## HITS:1 COG:SA1266 KEGG:ns NR:ns ## COG: SA1266 COG0328 # Protein_GI_number: 15927014 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Staphylococcus aureus N315 # 1 131 1 131 133 187 73.0 4e-48 MAKIHFDAATKGNPGRSACAIIIKENSQRYAFTHDLGEMDNHSAEWAAMLHALEHARELK VSNALLYTDSKLIEDSMLQGKVKNAKFKVYFENIEILEQSFDLMFVKWIPRKQNKEANQL AQQTLYKLTSQ >gi|224999886|gb|ACJC01000114.1| GENE 114 123731 - 154342 35472 10203 aa, chain - ## HITS:1 COG:no KEGG:SERP1011 NR:ns ## KEGG: SERP1011 # Name: ebh # Def: cell wall associated fibronectin-binding protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 10189 1 10189 10203 1 95.0 0 MKSKPKSNGRNICSFLLSKCISYSLSKLSTLNTYNFQITSNNKEKTSRIGVAIALNNRDK LQKFSIRKYAIGTFSTVIATLVFMGINPNHASADELNQNQKLIKQLNQTDDDDSNTHSQE IENNKQNSAGQTESLSSSTSHNQANARLSDQVKDPNETSQQLPTNVSNDSINQSHSETNM NNEPLQVDNSTMQALSKKVSDSDGNASENEHHKLTENVLAESRASKNDKEKENLQEKDKP QQVQPPLDKNALQAFFDASYHNYRMIDRDRADTTEYQKVKSAFDYVNDLLGNNQNIPSEQ LVSAYQQLEKALELARTLPQRSTTEKRGRRSTRSVVEERSSRSDYLDARTEYYVSKDDDD SGFPPGTFFHASNRRWPYNLPRSRNILRASDVQGNAYITTKRLKDGYQWDILFNSNHKGH EYMYYWFGLPSDQTPTGPVTFTIINRDGSSTSTGGVGFGSGAPLPQFWRSAGAINSSVAN DFKHGSATNYAFYDGVNNFSDFARGGELYFDREGATQTNKYYGDENFAMLNSEKPDQIRG LDTIYSFKGSGDVSYRISFKTQGAPTARLYYAAGARSGEYKQATNYNQLYVEPYKNYRNR VQSNVQVKNRTLHLKRTIRQFDPTLQRTTDVPILDSDGSGSIDSVYDPLSYVKNVTGTVL GIYPSYLPYNQERWQGANAMNAYQIEELFSQENLQNAARSGRPIQFLVGFDVEDSHHNPE TLLPVNLYVKPELKHTIELYHDNEKQNRKEFSVSKRAGHGVFQVMSGTLHNTVGSGILPY QQEIRIKLTSNEPIKDSEWSITGYPNTLTLQNAVGRTNNATEKNLALVGHIDPGNYFITV KFGDKVEQFEIRSKPTPPRIITTANELRGNPNHKPEIRVTDIPNDTTAKIKLVMGGTDGD HDPEINPYTVPENYTVVAEAYHDNDPSKNGVLTFRSSDYLKDLPLSGELKAIVYYNQYVQ SNFSNSVPFSSDTTPPTINEPAGLVHKYYRGDHVEITLPVTDNAGGSGLRDVNVNLPQGW TKSFTINPNNNTEGTLKLIGNIPSNEAYNTTYHFNITATDNSGNTTNPAKTFILNVGKLA DDLNPVGLSRDQLQLVTDPSSLSNSEREEVKRKISEANANIRSYLLQNNPILAGVNGDVT FYYRDGSVDVIDAENVITYEPERKSIFSENGNTNKKEAVITIARGQNYSIGPNLRKYFSL SNGSDLPNRDFTSISAIGSLPSSSEISRLNVGNYNYRVNAKNAYHKTQQELNLKLKIVDV NAPTGNNRVYRVSTYNLTNDEINKIKQAFKAANSGLNLNDNDITVSNNFDHRNVSSVTVT IRKGDLIKEFSSNLNNMNFLRWVNIRDDYTISWTSSKIQGRNTDGGLEWSPDHKSLIYKY DATLGRQINTNDVLTLLQATAKSSNLRSNINSNEKQLAERGANGYSKSIIRDDGERSYLL NSNPIQVLDLVEPENGYGGRQVSHSNVVYNEKNSTIVNGQVPEANGASAFNIDKVVKANA ANNGIMGVIYKAQLYLAPYSPKGYIEKLGQNLSNTNNVINVYFVPSDKVNPSITVGNYDH HTVYSGETFKNTINVNDNYGLNTVASTSDSAITMTRNNNELVGQAPNVTNSTNKIVKVKA TDKSGNENIVSFTVNIKPLNEKYRITTSSSNQTPVRISNIQNNANLSIEDQNRVKSSLSM TKTLGTRNYVNESNNDVRSQVVSKVNRSGNNATVNVTTTFSDGTTNTITVPVKHVLLEVV PTTRTTVRGQQFPTGKGTSPNDFFSLRTGGPVDARIVWVNNQGPDINSNQIGRDLTLHAE IFFDGETTPIRKDTTYKLSQSIPKQVYETNINGRFNSSGDAYPGNFVQAVNQYWPEHMDF RWAQGSGTPSSRNAGSFTKTVTVAYQNGQTENVNVLFKVKPNKPVIDSNSVISKGQLNGQ QILVRNVPQNAQVTLYQSNGTVIPNTSTTIDSNGIATVTIQGTLPTGNITAKTSMTNNVT YTKQNSSGIASNTTEDISVFSENSDQVNVTAGMKAKNDGIKIIKGTNYNFNDFNSFISNI PAHSTLTWNEEPNSWKNNIGTTTKTVTVTLPNHQGTRTVDIPITIYPTVTAKNPVRDQKG RNLTNGTDVYNYIIFENNNRLGGTASWKDNRQPDKNIAGVQNLTALVNYPGISTPLEVPV KVWVYNFDFPQPIYKIQVGDTFPKGTWVGYYKHLENGEGLPIDGWRFYWNQQSTGTTSDQ WQSLAYTRTPFVKTGTYDVVNPSNWGVWQTSQSAKFIVTNAKPNQPTITQSKTGDVTVTP GAVRNILISGTNDYIQASADKIVINKNGNKLTTFVKNNDGRWTVETGSPDINGIGPTNNG TAISLSRLAVRPGDSIEAIATEGSGETISTAATSEIYIVKAPQPEQVATHTYDNGTFDIL PDNSRNSLNPTERVEINYTEKLNGNETQKSFTITKNNNGKWTINNKPNYVEFNQDNGKVV FSANTIKPNSQITITPKAGQGNTENTNPTVIQAPAQHTLTINEIVKEQGQNVTNDDINNA VQVPNKNRVTIKQGNALPTNLAGGSTSHIPVVIYYSDGSSEEATETVRTKVNKTELINAR RRLDEEISKENKTPSSIRNFDQALNRAESQINTAKSEADQVIGTEFATPQQVNSALSKVQ AAQNKINEAKALLQNKADNSQLVRAKEQLQQTIQPAASTDGMTQDSTRNYNNKRQAVEQA IQHANDVINNGDATSQQINDAKNTVEQAQREYAEAKSNLRADKSQLQSAYDTLNRDVLTN DKKPASVRRYNEAISNIRSELDTAKADASSTLRNTNPSVEQVRDALNKINTVQPKVNQAI ALLQPKENNSVLVQAKKRLQDAVNDIPQTQGMTQQTINNYNDKQREAERALTSAQRVIDN GDATTQEITYEKSKVEQAMQALTNAKSSLRADKNELQTAYNKLIENVSTNGKKPASIRQY ETAKARIQNQINDAKNEAERILGNDNPQVSQVTQALNKIKAIQPKLTEAINMLQNKENNT ELVNAKNRLENAVNDTDPTHGMTQETINNYNAKKREAQDEIQKANTIINNGDATAQDISS EKSKVEQVLQALQNAKNNLRADKRELQTAYNKLIQNVNTDGKKPSSIQNYKSARRNIENQ YNTAKDEAHNVLENTNPTVNAVEDALRKINAIQPEVTKAINMLQDKEDNSELVRAKERLD QAINSQPSLNGMTQESINNYTAKRRDAQNIASSAETIINNGDASIEQITENKIRVEDATN ALNEAKQHLTADTTSLKTEVRKLSRRGDTNNKKPSSVSAYNNTIHSLQSEITQTENRANA IINKPIRSVEEVNNALHEVKQLNQRLTDTINLLQPLANKESLKESRNRLESKINETVQTE GMTQQSVENYNQTKIKAQNESSIAQTLIDNGDASDQEVSTEIEKLNQKLSELTNSINHLT VNKEPLETAKNQLQANIDQKPSTDGMTQQSVQSYQRKLQEAKDKINSINNVLANNPDVSA IRTNKVEAEQINNELTQAKQGLTVDKQPLINAKTALQQSLDNQPNTTGMTEATIQNYNAK RQKAEQAIQKANKVIENAQPSVQQVSAEKSKVEQALNELNNAKSALRADKEELQHAYDQL IQPTDLNNKKPATINAYNQRYQQFSNELNNTKTNADRILKEQNPSVANVNNALNKVREVQ QKLNEARALLENKENNDELVRAKEQLQQAVDQVPSTEGMTRQTKDDYNSKQQAAQQEITK AQQVIDNGDATTQQISNAKTNVERALEALNNAKTGLRADKEELQNAYNQLTQNIDTSGKT PSSIKKYNEAKSRIQSQIDSAKNEANSVLTNDNPQVSQVTAALNHIKSVQPELDKAISLL QNKENNDALVQAKQRLEQIANEADPTQGMTTDTANSYKSKKLEAEDEIQKAQQIINNGDA TEQQISNETNRVNQAINALNKAKNDLRADKSQLEHAYNQLIQNVDTNDKKTASIQQYQAA LQAIETQYNNTKSEAHQILENGNPSVNEVAQALQKVEAVQLKVNDAIHMLQDKEDNSALV TAKNQLQQAVNDQPLTTGMTQASINNYEAKRNEAQSAIRNAESVINNGDASAKQISDEKS KVEQALAHLNEAKQQLTADTSQLQTAVQQLNRRGDINNKKPRSISAYNKAIKSLETQITS AKDNANAVIQKPIRTVQEVNNALQQVNQLNQQLTEAISQLQPLSNNDALKAARLELENKI NQTVQTDGMTQQSVDAYQNAKREAQNESNTALALINNGDATEQQITTETDRVNQQTTNLT QAINGLTVNKEPLETAKTALQNNIDQVPSTDGMTQQSVANYNQKLQIAKNEINTINNVLA NNPDVNAIRTNKAEAERISNDLTQAKNNLQVDTQPLEKIKRQLQDEIDQGTNTDGMTQDS VDNYNDSLSAAIIEKGKVNKLLKRNPTVAQVKESVANAQQVIQDLQNARNSLVPDKTQLQ EAKNRLENSINQQTDTDGMTEDSLNNYNDKLTKARQNLEKITQVLNGQPTVAEIRQNTSE ANSHTQALDTARSQLTLNREPYINHINNESHLNNVQKDNFKAQVNSAPNHNALETIKNKA DTLNQSMTELSESIADYENQKQQENYLDASNNKRQDYDNAVNAAKGILNQTQSPTMGVDV INQKAEEVKRTKDALDGNHRLEEAKQLAIAHLNTLNDLNDAQRQALTDTINHSPNINSVN QAKDKANTVNTAMTQLKQTIANYDNELHDGNYINADKDKQDAYNNAVTNAKQLISQSDAN QAQLDPAEINKVTQRVNTTKNDLNGNDKLVEAKRDANTTIDGLTYLNEAQRNKAKENVGK ASTKTNIASQLQDYNQLNTAMQALRNSVNDVNNVKTGSNYINENNGPKEAYNQAVTHAQT LINAQSNPEMSRDVVNQKTQAVDTAHQNLNGQQKLEQARNSANTEINDLPNLTNDQKAKE KELVNSKQTRTEVQEQLNQAKALDGSMGTLKSLVAKQPEVQRTSNYNNEDQPEQSAYNDA ITMGQTIINKTADPVLDKTLVDNAVSNISTKENALHGEQKLATAKTEAINALNTLADLNT PQKESIKTAINTAHTRTDITAEQSKANQVNSAMHTLRQNISDNESVTNESKYINAEPEKQ HTFTEALNNAKEIVNEQQATLDANLINQKAQAILTTKNALDGEDQLRRAKENANQEINTL NQLTDAQRNSEKGLVNSSQTRTEVASQLAKVKELNKVMEQLNNLINGKNQMINSSKFINE DANQQQAYTNAIATAEALKNNSQNPELDKANIEQAINNINSAINNLNGEAKLTKAKEDAV ASINSLSGLTNEQKAKENQAVNDAETRDQVANKLRDAEALDQSMQTLRDLVNNQNAIHST SNYFNEDSTQKNTYDNAIDNGSTYITGQHNPELNKSTIDQTISQINTAKNDLHGAEKLQR DKGTANQEIGQLAYLNNPQRSGEEALVNGSNTRSEVEEHLNEAKALNNAMKQLRDKVAEK TNVKQSSDYINDSTEHQRVYDQALQEAENIINENANPTLNKSKIEQKLQQLTDAQNALQG SHLLENAKNNAISEINKLTALNDAQRQKAIENVQAQQTIPEVNQQLTSDRKINTAMQALR DKIGQQNNVHQQSNYFNEDEQPKHNYDNAVQAGQRIIDKSQDPIMSKNEIEQATNQIITT QTALNGENKLHTDQESTNRQIEGLSSLNQAQINAEKGLVNQSTTRTEVAQKLAVAKELNS AMSNLRDGIQNKEDIKRSSAYINADPAKVTAYDQALQNAENIINATPNVELNKATIEQAL THVQQAQQDLDGVQQLANSKHQATQNVDGLSSLNDGQKRELNLLINSANTRTKVQEELNK ATELNHAMEALRNSVQNVGQVKQSSNYVNEDQPEQHNYDNAVNEAQATINNNAQPVLDKS AIERLTQTVNTTKDALHGAQKLTQDQQAAETVIRGLTSLNEPQKNAEVAKVTAATTRNEV SNIRQEATTLDTAMHGLRESIKDKNDTKNSSKYINEDHDEQQAYDNAVNIAQHVIDETQA TLSSDTINQLANAVTQAKSNLHGDTKLQHDKDSAKQTIAQLQNLNSAQKHMEDSLIDNES TRTQVQHDLTEAQALDGLMSALKESIKNNANIVSNGNYINAEPSKKQAYNDAVQNAQNII NGTNQPTINKSNVNTATQAVNNTKDALDGDHRLEEAKNNANQTITNLSNLNNAQKDAEKN LVNSASTLEQVQQNLQTAQQLDNAMGELRHSIANKDQVKSDSKYLNEDPQIKQNYDDAVQ RAEGLINATQNPELLKANIDQATQSVQNAEQALHGAEKLNQDKQTSSTELDGLTDLTDAQ REKLREQINSSNSRDDIKQKIEQAKALNDAMKQLKEQVAQKDGVHANSDYTNEDSAQKDA YNHALKQAEDIINNSSNPNLNAQDITNALNNIKQAQDNLHGAQKLQQDKNTTNQAIGNLN HLNQPQKDALIQAINGATSRDQVAEKLKEAQALDEAMKQLEDQVNQDDQISNSSPFINED SDKQKIYNDKIQAAKDIINQTSNPTLDKQKIADTLQNIKDAVNNLHGDQKLAQSKQDANN QLNRLDDLTEEQKNHFKPLINNADTRDEVNKQLEIAKQLNGDMSTLRKVINDKDQIQHLS NYINADNDKKQNYDNAIKEAEDLIHNHPDTLDHKALQDLLNKIDQAHNELNGESRFKQAL DNALNDVDGLNSLNVPQRQTVKDNINHVTTLESLAQELQKAKELNDAMKAMRDSIMNQEQ IRKNSNYTNEDLAQQNAYNHAVENINSIIGEDNATMDPQIIKKATQDLNTAINGLNGDQK LQDAKTDANQQITNFTGLTEPQKQALKNIINQQTSRPNVAKQLSYAKFLNGKMEELKAAV AKAPLVRQNSNYINEDASEKEAYEQAIAKGQEIINAENNPTISSTDINRIIQEINVAEQN LHGENKLRQAQETAKNEIQNLDGLNSAQITKLIQDIDRTITKPAVTQKLEEAKAINQAMQ QLKQSIANKDATLNSSNYLNEDSEKKLAYDNAVSQAEQLINQLNDPTMDISNIQAITEKV IQAKDSLHGANKLAQNQADSNSIINQSSNLNDKQKQALNDLINHAQTKQQVAEIIAQANK LNNDMGTLKTFVEEQSKVHQQSKYINEDPQVQNIYNDSIQKGQEILNGTTDDVLNNNKIA DAIQNIQLTKNDLHGEQKLQKAQQDANNELNYLTNLNNSQRQSEHDEINSAPSRTEVSND LNHAKALNEVMRQLENEVALENSVKKLSDFINEDESAQNEYSTALQKAKDIINGVPTSTI DKATIEGALLDLQNARESLHGEQKLQEAKNQAVAEIDHLQALNPGQVLAEKTLVNQASTK PEVQEALQKAKELNEAMKALKTEIDKKEQIKADSKYINADSGLQANYNSALNYGSQIITT TQPPELNKDVINRATQTIKNAENNLNGQSKLAEAKSDGNQSIDHLQGLTQSQKDKQHDLI NQAQTKQHVDDIVNNSKQLDNSMNQLQQIVNNDNTVKQNSDFINEDSSQQDAYNHAIQAA KDLINAHPPIMDKNQIDQAIANIKQALNDLHGSNKLLEDKKEASEQLQNLNSLTNGQKDT ILDHIFSASTRNQVGEKIASAKQLNNIMKALRDSIADNIDVLQSSKYINEDSEQQNVYNQ AVNKAKNIINDQPTPVMAIDAIQSVLNEVKQTKDNLHGDQKLANDKTNAQATLNALNHLN QAQRSNLETKVQNSNSRPEVQKVVQLANQLNEAMKKLEDALTGNDAVKQTSNYINEDTSQ QVNFDEYTDRGKNIVAEQTDPNLSPANINTIADKITEAKNDLHGEQKLEQAQQQSINTIN QMAGLNQAQKEQLNQEIQQTHTRSEVHQVIHKAQALNDSMNTLRQSITDENNVKQTSNYI NETVGKQTAYNNAVDRVKQIINQTSNPTMNPLEVEHAASNVKTSKDALHGERELNDNKNS KTFAVNHLDNLNQAQKEALTHEIEQATIVSQVNNIYNKAKALNNDMKKLKDIVAQQDNVR QSNNYINEDSTPQNMYNDTVNHAQSIIDQVANPTMSHDEIENAINNIKHAINALDGEHKL QQAKENANLLINSLNDLNAPQRDAINRLVNKAQTREKVAEQLQSAQALNDAMKHLRNSIQ NQSTVRQESKYINASDDKKEQYNHAVREVENIINEQHPTLDKEIIKQLTDAVNQANNDLN GVELLDADKQNAHQSIPTLTHLNQAQQNVLNEKINSAVTRTEVAAIIGQAKLLDQVMENL EESIKDKEQVKQSSNYINEDPDVKETYDNAVNHVTEILNETVNPTLSIEDIEHAINEVNQ AKKQLRGKQKLYQTIDLADKELSKLDDLTSQQSSSISNQIYTAKTRTEVAQAIEKAKLLN HAMKALNKVYKNVDKVLDSSRFINEDQPEKEAYQQAINHVDSIIHRQTNPEMDPTVINSI TYELETAQNNLHGDQKLTHAQQDAANAINGLIHLNVAQRDVMINANTNATTREQVAKNLD NAQSLDKAMEALQQVVAHKNNILNDSKYLNEDSKYQQQYDRVIADAEQLLNQTTNPTLEP YKVDIVKDNVLANEKILFGAEKLSYDKSNANDEVKHMNYLNNAQKQSLKDMISHAALRTE VKQLLQQAKVLDEAMKSLEDKTQVVITDTTLPNYTEASEDKKEKVDQTVSHAQAIIDKIN GSNVSLDQVQQALEQLTQASENLNGDQRVEESKAHANQTIDQLTHLNSLQQQTAKESVKN ATKLEEIATASNNAQALNKVMGKLEQFINHADSVENSDNYRQADDDKIIAYDDALEHGQD IQKTNATQNETKQALQQIINAETSLNGFERLNHARPRALEYIKSLEKINNAQKSALEDKV TQSHDLLELEHLVNDGTNLNDIMGELAKAIVNNYAQTKASINYINADNLRKDNFTQAINN ARDVLNKTQGQNLDFNSIDTFKDDIFKTKDALNGIERLTAAKSKAEKLIDSLKFINKAQF THANDEIMNTNSIAQLSRIVNQAFDLNDAMKSLRDALNNQALPVQASSNYINSDEDLKQQ FDHALSNARKVLAKETGKNLDEIQIEGLKQVIEDTKDALNGIQRLSKAKDKAIQYVQSLS YINDAQRHIAENNIHTSDDLSSLANTLSNASDLDNAMKDLQDTIESNSSSVPNSVNYINA DKNLQIEFDEALQQASATSSKTSENPATIEEVLGLSQAIYDTKNALNGEQRLATEKSKDL KLIKVLKDLNKAQLEDVTNKVNAANTLTELSQLTQSTLELNDKMKLLRDQLKTLVNPVKA SLNYRNADYNLKRQFNKALKEAKGVLNKNSGTNVNINDIQHLLTQIDNAKDQLNGEQRLK EHQQKSEVYVIKELDILNNAQKAAIINQIRASKDIKMINQIVDNAIELDDAMQSLKEHVT QLTATTKDNIEYLNADEDLKLQYDYAINLANNVLDKENGTNKDVNIIIGMIQNMDDARAL LNGIARLKDAQAKAHNDIKETLKRQLDEIEHANATSNSKDQTKQMVNEEARKALSNINDA TSNDLVNQAKDEGQSAIEHIHADELPKAKLDANQMIDQKVENINHLISQNPNLSNEEKNK LISQIKKLVNEIKNEIHQAINKQQIENATTKLDGIIDTTKKLIIAKAEAKQVIKELSQKK RDAINNNTDLTPSQKAHALADIDKTEKDALQHIENSNSIDDINNNKEHAFNTLAHIVIWD TDQQPLVFELPELSLQNALVTSEVVVHRDETISLEAIIGAMTLTDELKANIVSLPKTDKV ADHLTAIVKVMLADGSYITVNVPVKVVEKELQIAKNDAIKIIDVLVKQKIKDIDSNNELT STQREDAKAEIERLKKQAIDKVNHSKSIKDIETVKRTDFKEIDQFDPKRFTLNKAKKDII TDVNTQIQNGFKEIEAIKGLTSKEKTQFDKQLTALQKEFLAKVDHAHNLVELNQLHQEFN NRYEHIINKAHLLGEKHIAEHKLGYVVINKTQQILNNQSASYLIKKWALDRIKQIQLETM NSIRDAHTVQDVNKALLQGIEQIMKVNVNITNQSFKDSLHNFNDLQSKFDARLREKDVAN HIVQTETFKEVLKGTGVEPGKNNKETQQPKLHKNDNDSLFKHLVDNFGKTVGVITLTGLL SSFWLVLAKRRKKEEEEKQSIKNHRKDIRLSDTDKIDPMVITKRKIDKEEQIQNDDKHSI PVAKRKKSKEKQLKEEDIHSIPVVKRKLNSDNNDTKQKKVASKKKKTPRSTKKVVKNKKR SKK >gi|224999886|gb|ACJC01000114.1| GENE 115 154524 - 155402 808 292 aa, chain - ## HITS:1 COG:SA1273 KEGG:ns NR:ns ## COG: SA1273 COG0258 # Protein_GI_number: 15927021 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Staphylococcus aureus N315 # 1 292 1 292 292 472 76.0 1e-133 MPQRVLLVDGMALLFRHFYATSLHNQFMYNSKGIPTNGIQGFVRHIFSAIKEIEPTHVAV CWDMGQETFRNEMYDGYKQNRPAPPDELIPQFDYVKEISHQFGFVNVGKRNYEADDIIGS LAETYSQEHEVYIITGDRDLLQCINHNVEVWLIKKGFTIYQRYTLDRFIDEYGLNPQQLI DVKAFMGDTADGYSGVKGIGEKTAIKLIQNHGTVENVVNNLSSLTPAQQKKITNNLNHLH LSKSLAEIYTKVPIETDKLFEEMTYAHTLNEILSICNEHELYVSSKYIASHL >gi|224999886|gb|ACJC01000114.1| GENE 116 155421 - 158858 2439 1145 aa, chain - ## HITS:1 COG:SA1274 KEGG:ns NR:ns ## COG: SA1274 COG0699 # Protein_GI_number: 15927022 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Staphylococcus aureus N315 # 1 1145 1 1145 1146 1274 65.0 0 MAINEQLDTLYKLKKELEKSNNRPLINTINQVIKKVYLNQYTATFVGHFSAGKSTLINLL LEQDILPSSPVPTTSNTAIVSVAKEDDIIANLTQQQYTKLKTYNDVKQMNRQNVDVESIE INFPSNKFNLGFTFQDTPGVDSNVATHQSSTEQFMYTSNLLFYTVDYNHVQSALNFKFMK RINEAGIPIIFVINQIDKHNEEEITFETFKSRVEKSIKDWDIKLQDTYYVSKFDHPQNEI DKLSNFLVFMDQHRESTEDYVNRTIQFITDAQYIYIQNEMQSILDTLQINEEQFEEAYIQ FQQNQEVSTEAQLLNDSNQLFNYLKQKRKDILDNAYIMTYDMRESLRNYLESMATDFKVN GFFNKRKKKEEEQIKRLNEATTQLQEKVNQQVRQPLREDMSFLTRFINKHAVNEKILNQD YDVVPSLISELYQTQTSISNTYVLTFSDEVIKALNKKIENESTPLFEEAVNHVQVNELSS DENEDRYEYDRYIELNTLKDSLTSHNYKHYYIHLDDSLDKLIGRTETHFELKQENSTAYH RKHETQHSKEFVTSNQDIKRALDIVKDVPLFDRTKQDITDTIQRLDNQITKVGVFGTFSA GKSSLINALLGDNYLVSSPNPTTAATTELSYGKESQITLKSKEQLLEEVNHVLEFYEISF NTLDNFIESDLEKLKSKLEKNQLAFISAIEKHYEMYTSMLEHSLIHTVSLEEIKKWSAED EYATFVKTVHLKLPLDWLKGKIIIDSLGLHSNNQRHTNETEQILTSSDLILYVTYFNHSF TDNDKAFIEHMKDMNQLNENQAFKMIINAVDLAEDKQDIQAVEDYVADALGQVNLHSDIY SVSSRQSLNGNNIGINELRESIQYFAKVESRTILEQQMTYQLQQMNNSFKKMIKDFHDDN AKLTARQHKLNHYKNQTLLNQELIDTTAQRTFNEVEEQVYHLNERLKLQLLDEVKSVFNS QMTQNNDFNEEKKISTKIYLDQIHQRLFLEQSLITERIKKYFNSQLEEQILPVMKKLNQI HVIINAKFNVEPSLVDTALLQIELNSMLQSLPKQLTKRKIVNPKSQKDIQVHIANQTLEL LQDDLNSLRRQLNDYIHEMTQLAEHQFQMLETSIQQQIDELLSFTIDDTLIQQLELKTTQ LDNIL >gi|224999886|gb|ACJC01000114.1| GENE 117 159235 - 159873 708 212 aa, chain - ## HITS:1 COG:XF1747 KEGG:ns NR:ns ## COG: XF1747 COG0702 # Protein_GI_number: 15838348 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Xylella fastidiosa 9a5c # 1 211 1 212 213 181 41.0 7e-46 MKTVLIVGANGRVSIEATKIFLENSRFNVDLFLRNAHRIPDYASNRIKVYEGDAKNIEDL ESALNNVDVVFASLSGSLDKQAETIVKAMDNKNVKRLIFVAAPGIYDELPEPFNQWNKEQ FGEKLNRYRKASDIIENSDLDYTIIRPGWLTDKNENVYEITAKNETFKGTEVSRKSVASL AVQIAKNPELHSKENIGVNKPNTEGNKPAWFN >gi|224999886|gb|ACJC01000114.1| GENE 118 160041 - 161177 1088 378 aa, chain - ## HITS:1 COG:SA1277 KEGG:ns NR:ns ## COG: SA1277 COG0116 # Protein_GI_number: 15927025 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Staphylococcus aureus N315 # 1 377 1 377 381 701 87.0 0 MFQLLAVCPMGLEAVVAKEIQELGYDTQVENGRIFFEGDESAIVRCNLWLRTADRIKIVM GRFNATTFDELFEQTKSLPWETVIDKEGNFPVQGRSVKSTLYSVPDCQAITKKAIVERLK HAHQEKGWLSETGAKYPVEVAILKDNVLLTIDTAGSGLNKRGYRIAQGEAPIKETLAASL IRLANWNGNTPLIDPFCGSGTIAIEACLIAQNIAPGFNRDFVSEQWNMMPPNIYDKFRDE ADQLADYDKDIQVYASDIDPEMIEIAKRNAEEVGLGDIIQFNVKDVNTLSIDTDMPVALV GNPPYGERIGDREEVEEMYRYIGTLLKQHPHLSAYILTSNKEFEYLVNRKATKRRKLFNG YIECTYYQYWGKKQSNKN >gi|224999886|gb|ACJC01000114.1| GENE 119 161819 - 162157 451 112 aa, chain - ## HITS:1 COG:SA1279 KEGG:ns NR:ns ## COG: SA1279 COG3599 # Protein_GI_number: 15927027 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Staphylococcus aureus N315 # 1 112 1 114 114 145 89.0 2e-35 MSDVSLKLSAKDIYEKDFEKTMARGYRREEVDAFLDDIITDYQKMADMNNEVVKLSEENH KLKKELEELRLRVATSRPQDNKNFSSNNSSSASNNVDILKRISNLEKAVFGK >gi|224999886|gb|ACJC01000114.1| GENE 120 162171 - 162737 672 188 aa, chain - ## HITS:1 COG:SA1280 KEGG:ns NR:ns ## COG: SA1280 COG4474 # Protein_GI_number: 15927028 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 187 1 187 187 276 75.0 2e-74 MVKTVYITGYKSFELNIYKDDAPEVYYLKQFIAHKLKHLLDEGLEWVLIQGQMGIELWSA EVVIELKKDFPDIKLGIITPFLGHTQRWNDKNQAKYTNIIQQADFTESIHHTEYMGAYQF KQADQFMLDHTDYTILIYDDEQEASPKYFKAMLVEFMEKTNYTCDIVTFDELTDFINDLQ WSQDQSFE >gi|224999886|gb|ACJC01000114.1| GENE 121 162749 - 163081 268 110 aa, chain - ## HITS:1 COG:no KEGG:SERP1018 NR:ns ## KEGG: SERP1018 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 110 1 110 110 187 98.0 1e-46 MYQIIKQLLEDIDEMNYRYQHVKINGGSFDFYKDVEPYVKNIDNHLEALNFYSKSITETQ YMSQQKLDLLILNIQKLSVDCHFPRTSRKLFVEKLKSAQYDLKNILSNYV >gi|224999886|gb|ACJC01000114.1| GENE 122 163425 - 164051 505 208 aa, chain + ## HITS:1 COG:SA1282 KEGG:ns NR:ns ## COG: SA1282 COG3331 # Protein_GI_number: 15927030 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Staphylococcus aureus N315 # 1 208 1 208 208 337 87.0 8e-93 MNYPNGKPYSKNKPLDGRKSSPFSSNIEYGGRGMTLEKDIEQSNTFYLKSGIAVIHKKPT PVQIVNVHYPKRSKAVINEAYFRTPSTTDYNGVYNGYYIDFEAKETKNKTSFPLNNIHAH QVEHMKNTYHQKGIVFLMIRFKSLDEVYLLPYSKFEKYWQRYINNIKKSITVEEIRKNGY HIPYQYQPRLNYLKAVDKLILDESEDRV >gi|224999886|gb|ACJC01000114.1| GENE 123 164048 - 166279 2098 743 aa, chain + ## HITS:1 COG:SA1283 KEGG:ns NR:ns ## COG: SA1283 COG0744 # Protein_GI_number: 15927031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Staphylococcus aureus N315 # 1 717 1 718 727 1089 83.0 0 MTENKGSSQPKKNNNGKSNGKKNRNVKRTIIKIIGFMIIAFFVLLLLGILLFAYYAWKAP AFSESKLDDPIPAKIYDKNGELVKTLDNGQRHEHVNIKDVPKDMKNAVLATEDNRFYQHG ALDYKRLFGAIGKNLTGGFGSQGASTLTQQVVKDSFLTQQKSIGRKAQEAYLSYRLEQEY SKDEIFQVYMNKIYYSDGVTGIKAAAKYYFNKDMKDLNLAEEAYLAGLPQVPNLYNIYNN PKEANNRKDTVLYLMHKHNRINDKQYADAKKIDLKANLVERTKKERQVTGNEKNPEYDSY VNFVQSELMNNKYFKDKNLGSVLQSGIKIYTNMDKDVQQTLQDRINNGSFYKNEDQQVGA TILDSKTGGLVAISGGRNYKNVVERNQATDPHPTGSSLKPFLAYGPAIENMKWSTNHAIQ DESSYWVDGSQFKNYDTKGHGTVSIYDALRQSFNIPALKTWQQVKSQAGNDAPQKFASKL GLDYSGKIGPSEVLGGSSSEFSPTQLASAFAAIANGGTYNNAHSIQKVVTHEGDTIEYEH TSHKAMKDYTSYMLAEILKGTFKAYGSAYGHGVSGVNMGAKTGTGTYGQEIYEKYNLPDN AAKDVWINGFSPEYTMSVWMGFNKVKQYGTNSFIGHSEQEYPQYLYEDVMSSISSKDGED FKKPNDVQGSSPDSLSVSGHSDNNTTNRSVHGSSDTSSSSNGGSNSASSGNSSNSSNGAS QGNSGNTFTRLFNLNSIFDYKVS >gi|224999886|gb|ACJC01000114.1| GENE 124 166469 - 166801 410 110 aa, chain - ## HITS:1 COG:no KEGG:SERP1021 NR:ns ## KEGG: SERP1021 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 110 1 110 110 179 98.0 4e-44 MIEKQDFNHIEDQLDQLASNKQLKTPEARELLDTYFDLIINYFKQINNIDEIHFNQLDTY PVVPMNFDERYHYMVARKHHFMGYRQMKTLKLELIKMNASYLIRKQRQQK >gi|224999886|gb|ACJC01000114.1| GENE 125 166806 - 167465 503 219 aa, chain - ## HITS:1 COG:SA1285 KEGG:ns NR:ns ## COG: SA1285 COG0177 # Protein_GI_number: 15927033 # Func_class: L Replication, recombination and repair # Function: Predicted EndoIII-related endonuclease # Organism: Staphylococcus aureus N315 # 1 219 1 219 219 393 87.0 1e-109 MISKKKALQMIDVIADMFPNAECELNHRNAFDLTIAVLLSAQCTDNLVNRVTQSLFRKYR TPEDYLNVSDEELQNDIRSIGLYRNKAKNIKKLCHSLIEQFNGQIPQTHKELESLAGVGR KTANVVMSVAFGEPSLAVDTHVERVSKRLGINRWKDNVRQVEDRLCDIIPRDRWNKSHHQ LIFFGRYHCLARKPKCEICPLLNDCREGQKRHKAKIKEA >gi|224999886|gb|ACJC01000114.1| GENE 126 167455 - 168141 600 228 aa, chain - ## HITS:1 COG:SA1286 KEGG:ns NR:ns ## COG: SA1286 COG3935 # Protein_GI_number: 15927034 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 320 78.0 2e-87 MDLIQLKTRPVVIRRELFDHYSELGLDEQDLVILIKLLYASETSNKQPSIEFLQKGSTME PRQITSVIQNLIQRELLELNVNKDEEGKFTEYMNLDPFYHKLNQLLKHQYLKHEEQDKKE QFKQLFQLVEQSFGRPLSPYEIETLNQWIDVDHHDLSVIQAALDEALSQNKLSFKYIDRI LLNWKKNNVKTVDDSKKIREQFNKPKMKHVVKKVPKFDWLNGENPNDK >gi|224999886|gb|ACJC01000114.1| GENE 127 168235 - 169527 1598 430 aa, chain - ## HITS:1 COG:SA1287 KEGG:ns NR:ns ## COG: SA1287 COG0017 # Protein_GI_number: 15927035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Staphylococcus aureus N315 # 1 430 1 430 430 815 90.0 0 MKTTIKQAKKHLNQEVTIGAWLTNKRSSGKIAFLQLRDGTGFMQGVVVKSEVDEETFQLA KDITQESSLYITGTITEDNRSDLGYEMQVKSIEIVHEAHDYPITPKNHGTEFLMDHRHLW LRSKKQHAVMKIRNEIIRATYEFFNENGFTKIDPPILTASAPEGTSELFHTKYFDEDAFL SQSGQLYMEAAAMAHGRVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFTNHAESLEIQEQ YVSHIVQSVLNHCQLELKALDRDTTKLEKVATPFPRISYDDAIEFLKKEGFNDIEWGEDF GAPHETAIANHYDLPVFITNYPTKIKPFYMQPNPDNEDTVLCADLIAPEGYGEIIGGSER INDLELLEQRINEHELDEESYSYYLDLRRYGSVPHSGFGLGLERTVAWISGVEHVRETSP FPRLLNRLYP >gi|224999886|gb|ACJC01000114.1| GENE 128 169648 - 172356 1953 902 aa, chain - ## HITS:1 COG:SA1288_2 KEGG:ns NR:ns ## COG: SA1288_2 COG1199 # Protein_GI_number: 15927036 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Staphylococcus aureus N315 # 247 894 6 653 656 1016 82.0 0 MGIATFAVVDLETTGNQLDYDEIIQIGITFVRQNQVIDTYHSMIRTDLEIPPFIQALTSI EEEMLVQAPYFNEVADDIYQLIKDCVFVAHNISFDLNFIKKAFEKCNIQFKPKRVMDTLE LFKIAFPTDKSYQLSALAESHHIPLNNAHRADEDATTTAKLMIKAFEKFEQLHLDTQKQL YYLSKNLKYDLYHILFEMVRNYQTKPPNNQFEQFEQIIYRKQIDLKKPAVNFDGTLKDLY KNVTQSLNLTYRPQQLYLAEIILDQLMHSDKAMIEAPLGSGKSLAYLLAATMYNIETGRH VMISTNTKLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISLGLISQILKDDTSNYEV NILKMQLLIWITETNTGDIQELNLKGGQKMYVDQKIETYVPVRHDIHYYNYIKRNAQNIQ IGITNHAHLIHSDSENTIYQLFDDCIIDEAHRLPDYALNQVTNDLNYSDVKYQLGLIGKN ENEKLLKAVDKLEQQRILEKLDIAPIDVFGLKININELHDLNEQLFTTIYNIIQTSDVYD DDIHKYHYVYEFETSEILKDLRSIIDKLNKTIEIFNGMNHKTIKSVRKQLLYLHDKFKLI EQSIKDHHTSFISIKNLAQKSTIRLLVKDYDVKDILTKQVLEKFKSLTFISGTLTFNHSF KAFQNWFNEDIDFNTFEISTPLTSSNHTNVFVPNDVETYNYKNLDDYVASIVDYIVEYIT VTQSKCLVLFTSYKMMHMVQDLLNELPELEDYVILTQQQNQNYKIVQQFNNFDKSILLGT STFFEGFDFQANGLKCVMIAKLPFMNKHNIKYWLMDSEFTSTFKDYVLPDAVTRFRQGLG RLIRHEDDKGLIVSFDDRLINSTYKNFFAQSLEHFKQRKGNIKQFNKLLNQIQKSIDNES KS >gi|224999886|gb|ACJC01000114.1| GENE 129 172381 - 173352 881 323 aa, chain - ## HITS:1 COG:SA1289_2 KEGG:ns NR:ns ## COG: SA1289_2 COG0340 # Protein_GI_number: 15927037 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Staphylococcus aureus N315 # 80 323 3 246 246 333 66.0 2e-91 MSKYSQDVIKMLYEHQSNYISGQYIADQLNISRAGVKKVIDLLKEDGCDIESINHKGHQL NSLPDQWYSGIVKPILDELGLFNHLEVYQTVDSTQLKAKRALVGNNDTFLILSDEQTEGR GRFNRNWESSKGKGLWMSLVLRPDVPFSMIPKFNLFIALGIRDAIQQFSNERVTIKWPND IYIGNKKICGFLTEMVANYDAIEAIICGIGINMNHVESDFDEDIKDKATSIRMHSDSKIN RYTFLTTLLTQIIHRFDQFLHQTFESIREEYIHATNIWHRQLKFTENDHQFLGEAIDIDS DGFLIVKDEEGQLHRLMSADIDL >gi|224999886|gb|ACJC01000114.1| GENE 130 173339 - 174541 945 400 aa, chain - ## HITS:1 COG:SA1290 KEGG:ns NR:ns ## COG: SA1290 COG0617 # Protein_GI_number: 15927038 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Staphylococcus aureus N315 # 1 400 1 400 400 449 55.0 1e-126 MCHEIFKQAKPILKKIQNNGFKAYFVGGSVRDYIMQRPIHDVDITTSAMPDEIESIFDKT IPVGKEHGTINVVFQNDNYEITTFRSEDEYINHRRPSEVYFVRDLYQDVQRRDFTMNAIA MDLNYQLYDYFNGQQDIKNRVIRTVGVPSERFSEDALRIIRGLRFQSQLNFQIDSDTLQA MSSHISDIQYLSVERVVVELKKLIMGNNVKQSFEVMQNMKAFNYIPFFKSFEMSHLHIDE PITFELWIAILIVQQPKDVQLSSLKISNQEKATIKKWITLIQTLPKIQSKQSLITLVYDY NLKDIEILLSLHHLLKQNGLTTANQLIINEISIREANKKLPIHCRKELAINGKDILNHTN KNSGPWLKDTLREIEIAVISNQIANTKEEILEWVDAHVKI >gi|224999886|gb|ACJC01000114.1| GENE 131 174531 - 175673 1014 380 aa, chain - ## HITS:1 COG:SA1291 KEGG:ns NR:ns ## COG: SA1291 COG0438 # Protein_GI_number: 15927039 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 1 377 1 377 380 607 79.0 1e-173 MKIGITCYPSMGGSGIIATELGIKMAERGHEVHFITSNIPFRIRKPLPNMTFHQVEVNQY AVFQYPPYDITLSTKISDVIQEYDLDILHMHYAVPHAVCGILAKQMSGKDVKIMTTLHGT DITVLGYDHTLQNAIKFGIEQSDIVTSVSHSLAQQTYEIINTQKEIIPIYNFVRENEFPT RHNEELKDCYGISSEEKVLIHVSNFRKVKRIDTVIETFAKVHESIPSKLILLGDGPELID MRHKARELDVEAHVLFLGKQNDVSAFYQLSDLVLLLSEKESFGLTLLEAMKTGVLPLGSR AGGIKEVIRHEETGFIVDIGDSTQAAKYAIKLLSNPELYQKMQSQMLKDIEARFSSDLIT DQYENYYRKMLEQGENSNVS >gi|224999886|gb|ACJC01000114.1| GENE 132 175695 - 176012 428 105 aa, chain - ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 1 105 1 105 105 157 85.0 6e-39 MKSMEQMQQEVDDYISQFKTGYFSPLANLARMTEEVGELAREINHHFGEKKKKDTEEDNT IKAELGDNLFVLLCIANSLNIDMTESFNDTMNKFNTRDKNRFERK >gi|224999886|gb|ACJC01000114.1| GENE 133 176192 - 176887 729 231 aa, chain - ## HITS:1 COG:SA1293 KEGG:ns NR:ns ## COG: SA1293 COG2738 # Protein_GI_number: 15927041 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Staphylococcus aureus N315 # 2 231 3 232 232 366 87.0 1e-101 MSLISMIIYFVILMVIPMWAQHKVKSNYEKYSQVRSTSGKTGREVAEEILHSNGIYDVDV VKGEGFLTDHYDPNKKVVCLSPANYDRPSVAGTAIAAHEVGHAIQHQQGYAPLRFRTALV PLANIGSSLSYIIIMVGIVLTALGSVFGSTVLWVGAGLMSLAVLFSIVTLPVEFNASSRA MKQITALNIVNEKEYKHAKKVLSAAAMTYVASTAVALAELARIILIARSSD >gi|224999886|gb|ACJC01000114.1| GENE 134 176932 - 177525 366 197 aa, chain - ## HITS:1 COG:SA1294 KEGG:ns NR:ns ## COG: SA1294 COG4347 # Protein_GI_number: 15927042 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 5 194 6 195 195 182 53.0 5e-46 MNQWLWETSLYQKWLISFILVCNIFGTIYGYHWYSSQLANTPNYFKLFVPDSPTATLFLC LSLLLILFNKRNALIDALAFITLFKYGSWAVIMNILMFIKMNDVAINGLMLLISHAIMML EAIYFYPRFKISKLAGLMTFIWVTVNDVIDYIYGQYPYYNFIAKHLIEVGVLAYSLTIIS YILFLKLQKWLKVKTFD >gi|224999886|gb|ACJC01000114.1| GENE 135 177537 - 178100 481 187 aa, chain - ## HITS:1 COG:SA1295 KEGG:ns NR:ns ## COG: SA1295 COG5582 # Protein_GI_number: 15927043 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 186 1 186 191 188 59.0 5e-48 MNDSLIRIKQNFIEYILFNYRFKSRITVWVLNYLKANQDKLNNVHFVNSKINNHYTLEIA EVDTTASAIQLSKDNKAYINTNQIFNYIANHTLRLDIQIHFAHCHAREPRLDDLILMQLI HSPSYSSYVQDLYSISMDKRKQTTIIQTLQNNIDLSLQMNEPDYFYQLTQILNVLKSKDI QSTLNDR >gi|224999886|gb|ACJC01000114.1| GENE 136 178114 - 179358 1448 414 aa, chain - ## HITS:1 COG:SA1296 KEGG:ns NR:ns ## COG: SA1296 COG0457 # Protein_GI_number: 15927044 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Staphylococcus aureus N315 # 1 413 1 413 414 638 87.0 0 MEDIYKLIDDINLQKIENLDSRVNEALSSNNDDALFILGETLYNFGLTPQGLEVFRTLYH KYPDESELLIYFIEGLMSENQTDEALEYLAQVEPSTEKLMLEADLYQQINMLEVAIDKLQ EALDLEPNDPIIHFALAELLYYDGQYLRATREYETVLETGEYEVNGVNLFSRMADCSLQS GNYSDAISLFDEINEEEMNSEDYFKKSIAYEKNDLTQEAIKIMQTLLSKDPDFIQGYFYL QSLFENEKNYPDAIETGKEGLRLSQFYKELMVSTGSLEIEHGDANEGVELLKQALEVDNA YHEPLLILSDLYRNEEDYESIIQLLTYVDEEDLDPIFMWHLAYAYGQEERDKEAQHFFEL AYPTLQTQVEFLSDYYFYLLEIGQKEKALLILNQLLEIDPSNENWHDESMRLQM >gi|224999886|gb|ACJC01000114.1| GENE 137 179362 - 180663 1270 433 aa, chain - ## HITS:1 COG:SA1297 KEGG:ns NR:ns ## COG: SA1297 COG0128 # Protein_GI_number: 15927045 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Staphylococcus aureus N315 # 1 432 1 432 432 651 80.0 0 MNNSEIININGPLKGEIEVPGDKSMTHRAIMLASLAKGISTIYEPLLGEDCRRTMDIFKQ LGVTIEEQDNSIIINSPGYQNFTTPHQVLYTGNSGTTTRLLAGLLSGLGIESVLSGDVSI GKRPMDRVMKPLLKMNANISGIDNNYTPLIIKPSTIKGINYQMEVASAQVKSAILLASLF SKEATTLTEIDVSRNHTETLFAHFNIPISIQGKTIQTLPYAIEHIQPRDFHVPGDISSAA FFIVAALITPGSDITIHNVGINPTRSGIIDIVKQMGGNIELSNVSKGAEPTASIHVTYTP NLNAVTIKGDLVPRAIDELPVIALLCTQASNSCIIKDAEELKVKETNRIDTTADMLNLLG FNLQPTHDGLIIHPSEFRSNATVDSQTDHRIGMMLAVASLLSSEPLKIEQFDAVNVSFPG FLPKLKLLENEGK >gi|224999886|gb|ACJC01000114.1| GENE 138 180673 - 181737 768 354 aa, chain - ## HITS:1 COG:SA1298 KEGG:ns NR:ns ## COG: SA1298 COG0337 # Protein_GI_number: 15927046 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Staphylococcus aureus N315 # 1 354 1 354 354 446 63.0 1e-125 MELKTSYASDNYPIIVEHHAINSLEKYIKNEEQRFFIIDKQVYNLFVDKLEALAQKLDAK CIVIPSGETSKSFEHYHRTIEYLLSHQLTRQTCIVAIGGGATGDFAGFIAATLLRGVSFV QVPTTILAHDSSVGGKVGINSEHGKNLIGAFYRPKAVIYDLDFLETLPYSEILSGYAEVY KHALLNGEDSTKNIESNFTSNKNLQALKNLDHYLFEGIKTKLNIVVEDEKEKGKRKFLNL GHTFGHAIEYEHKIPHGHAVMIGILYQFIVANHLFESNYNIQHYINYMKKLKYPLSIIKQ LHFEDTYHFMLLDKKNDYNGIQMVLLKNLGKPVVTHVDKDTLLSAFEELQSYFK >gi|224999886|gb|ACJC01000114.1| GENE 139 181765 - 182931 1444 388 aa, chain - ## HITS:1 COG:SA1299 KEGG:ns NR:ns ## COG: SA1299 COG0082 # Protein_GI_number: 15927047 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Staphylococcus aureus N315 # 1 388 1 388 388 658 86.0 0 MRYLTSGESHGPQLTVIIEGVPANLEITAEDINKEMFKRQGGYGRGRRMQIEKDTIEIVS GVRNGFSLGSPITLVVTNDDFTHWRKIMGVAPISDEERENMKRTITKPRPGHADLVGGMK YNHRDLRNVLERSSARETAARVAVGAVSKILLEQLDIHLYSRVVEIGGIKDKGLYDVDMF KNNVDKNDVRVVDENIAQQMRDKIDEAKKDGDSIGGVVQVMAENMPIGVGSYVHYDRKLD GRIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEIHYNQDLGYFRATNHLGGFEGGMSN GMPIIVNGVMKPIPTLYKPLNSVDINSKEDFKATIERSDSCAVPAASVVCEHVVAFELAK AVLEEFQSNHMDQLIAQIKERRQLNIEF >gi|224999886|gb|ACJC01000114.1| GENE 140 183411 - 183881 584 156 aa, chain - ## HITS:1 COG:SA1301 KEGG:ns NR:ns ## COG: SA1301 COG0105 # Protein_GI_number: 15927050 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Staphylococcus aureus N315 # 8 156 1 149 149 247 79.0 5e-66 MHRGTHEVERTFLMIKPDAVQRNLIGEIISRIEKKGLKLVGGKFMQVPMELAEKHYSEHK GKPFYDKLISFITSAPVFAMVVEGENAVAVSRKIIGSTNPSEAAPGTIRGDYGLNLGRNI IHGSDSTESAQREVKLWFTSSEIADYKEPREDWLYE >gi|224999886|gb|ACJC01000114.1| GENE 141 184000 - 184959 774 319 aa, chain - ## HITS:1 COG:SA1302 KEGG:ns NR:ns ## COG: SA1302 COG0142 # Protein_GI_number: 15927051 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Staphylococcus aureus N315 # 1 318 1 318 319 449 75.0 1e-126 MAKLNINNEIKKVEKRLEEAIISSDQTLQDASFHLLSSGGKRVRPAFVILSGQFGSNNKP SEDTYRVAVALELIHMATLVHDDVIDKSDKRRGRLTISKKWDQSTAILTGNFLLAMGLKY LSEISDTRVHTTISKSIVDVCRGELFQFQDQFNSNQTITNYLRRINRKTALLIQLSTQVG AITSNASNDVIRKLKMIGHYIGMSFQIIDDVLDFTSSEKKLGKPVGSDLMNGHITLPVLL EMRKNKTFKDKVSQLNPDSPQHAFETCITIIRQSESIEQSKQISEKYLNKAINLIDELED GPNKELFRKLIKKMGSRNK >gi|224999886|gb|ACJC01000114.1| GENE 142 184961 - 185686 423 241 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 14 233 1 221 221 167 41 4e-40 MAENQAKKEQVHTVFQNISQKYDRLNNIISFEQHKVWRKHVMSTMNVQKGSKALDVCCGT ADWTIALSEAVGSKGQVTGLDFSENMLEVGKQKTASLDNIQLVHGDAMNLPFDDNSFDYV TIGFGLRNVPDYLSALKEMHRVLKPGGMVVCLETSQPTLPLFKQIYSLYFKFVMPIFGKM FAKSKEEYEWLQQSTFNFPDKQTLKGLFFEAGFNDIIVRSFTGGVAAMHLGYKENSSSKG D >gi|224999886|gb|ACJC01000114.1| GENE 143 185692 - 186258 472 188 aa, chain - ## HITS:1 COG:no KEGG:SERP1040 NR:ns ## KEGG: SERP1040 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 187 1 187 192 312 95.0 3e-84 METTISKLNKHVEQLLKGINEYESIEINSSLSQLLDMYSIPDEAKIACLTIDTSMRHLDA IGDNHLSKKAILIGDLLSAHFYTLLANIQDSTFQLTMSKAIVKINEDKSSINQNDLTDEE LKDAILDIEILFPYLTINHFGSSVDKIKLFTELTSKYKDYHPEYLGKFNRHEIDKYIQEI SKSYKKKR >gi|224999886|gb|ACJC01000114.1| GENE 144 186734 - 187006 178 90 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 1 90 4 93 96 73 37 1e-11 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLAKGEKVQLIGFGNFEVRERAARKG RNPQTGKEIDIPASKVPAFKAGKALKDAVK >gi|224999886|gb|ACJC01000114.1| GENE 145 187177 - 188175 1231 332 aa, chain - ## HITS:1 COG:SA1306 KEGG:ns NR:ns ## COG: SA1306 COG0240 # Protein_GI_number: 15927055 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 332 1 332 332 527 81.0 1e-149 MRKITVFGMGSFGTALANVLAQNGHDVLMWGKNVENVDELNTHHMNKSYLKDAKLDSSIK ATADLNSAVQFSDIYLMALPTKAIREVSKDIDQLLTSKKTFIHVAKGIENGTFKRVSEMI EDSILPEHNGGIGVLSGPSHAEEVVIKQPTTVAASSKDNNVSKLIQDLFMNDYLRVYTNN DLVGVELGGALKNIIAIASGIVAGMGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGL GGIGDLIVTCTSTHSRNYTLGFKLGQGKTAEEALKEMKMVVEGIYTTKSVYHLAQQEGVE MPITNALYEVLFEDVPVSKSVRTLMERDKKAE >gi|224999886|gb|ACJC01000114.1| GENE 146 188196 - 189506 1607 436 aa, chain - ## HITS:1 COG:SA1307 KEGG:ns NR:ns ## COG: SA1307 COG1160 # Protein_GI_number: 15927056 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 1 436 1 436 436 776 93.0 0 MTKPIVAIVGKPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGG IEIGDAPFQTQIRAQAEIAIEEADVIIFMVNVREGLTQSDEMVAQMLYKSKKPVVLAVNK VDNLEMRNDIYDFYSLGFGDPYPISGSHGLGLGDLLDAVVENFNKESEDPYDEDTIRLSI IGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAIDTEYSYDGQDYVLIDTAGMRKKGKVY ESTEKYSVLRALKAIERSEVVLVVIDAEQGIIEQDKRVAGYAHEEGKAIVIVVNKWDTVE KDSKTMKKFTDDIRNEFQFLDYAQIAFVSAKEGLRLKTLFPYINQASENHKKRVQSSTLN EVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTFVVFVNDVELMHFSYRRYLENQIRNA FGFEGTPIHIIPRKRN >gi|224999886|gb|ACJC01000114.1| GENE 147 189722 - 190900 1974 392 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|242242755|ref|ZP_04797200.1| 30S ribosomal protein S1 [Staphylococcus epidermidis W23144] # 1 392 1 392 392 764 100 0.0 MTEEFNESMINDIKEGDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEV VKVGDEVEAYVTKIEFDEENDTGAYILSKRQLETEKSYEYLQEKLNNDEVIEAEVTEVVK GGLVVDVGQRGFVPASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILSRKAVEQLEN DAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSVG EAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDDVIEGTVVRLANFGAFVEIAP SVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKILGIDEDNERISLSIKATLPKENVIESD ASTTQSYLEDDNDEDKPTLGDVFGDKFKDLKF >gi|224999886|gb|ACJC01000114.1| GENE 148 191384 - 192031 235 215 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 1 211 32 279 863 95 29 2e-18 MSSINIALDGPAAAGKSTIAKHVASRLSMIYVDTGAMYRAITYKYLQNGKPENFDYLINN TKLELTYDEAKGQRIILDNQDVTDYLRENDVTHHVSYVASKEPVRSFAVKIQKELAAKKG IVMDGRDIGTVVLPDAELKVYMIASVAERAERRQKENEQRGIESNLEQLKDEIEARDHYD MNREISPLQKAEDAITLDTTGKSIEEVTNEILSLL >gi|224999886|gb|ACJC01000114.1| GENE 149 192110 - 193078 850 322 aa, chain + ## HITS:1 COG:SA1310 KEGG:ns NR:ns ## COG: SA1310 COG0252 # Protein_GI_number: 15927060 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Staphylococcus aureus N315 # 1 321 1 321 322 445 69.0 1e-125 MKRLLVIHTGGTISMSQDQTNKVITNEENPISQHQNIIGQYAKVDEINLLNIPSPHMTIS NVVRLRDEIITYSKENIYDGFVITHGTDTLEETAFLIDLLIDIQEPIVITGAMRSSNEIG SDGLYNFISAIRVATSFEANHKGVMVVFNDEIHTARNVTKTHTSNINTFQSPNQGPLGVL TKNRVQFYHHPYRQTTYQYIDVNLRVPLVKAYMGMEDDVLSFYAQQHVDGIVIEALGQGN LPKSCLNGLQQCLKNKIPLVLVSRSFNGIVSPVYAYEGGGADLKNNDVIFSNGLNGPKAR LKLLVGLSQDMTHNQLERYFEE >gi|224999886|gb|ACJC01000114.1| GENE 150 193291 - 194277 1111 328 aa, chain - ## HITS:1 COG:SA1311 KEGG:ns NR:ns ## COG: SA1311 COG0492 # Protein_GI_number: 15927061 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 1 328 1 328 328 548 82.0 1e-156 MQTIESIIIGGGPCGLSAAIEQKKKGIETLVIEKGNVVESIYNYPTHQTFFSSSDKLSIG DIPFIVEDSKPRRNQALVYYREVVKHHQLNIHPFEEVLTVKKINNKFAITTTKGVYECKY LTVATGYYGQHNTLEAEGAELPKVFHYFKEAHPYFNQNVVIIGGKNSAVDAALELEKAGA NVTVLYRGEQYPKAIKPWILPNFESLVNHEKITMEFNATVTKITDHSVTYEKDGQLIEID NDYVFAMIGYHPDYDFLKTIGIDIHTNEYGTAPVYNRETFETNVENCYIAGVIAAGNDAN TIFIENGKYHGGVITQSILTKKQTPLET >gi|224999886|gb|ACJC01000114.1| GENE 151 194410 - 195864 1858 484 aa, chain - ## HITS:1 COG:no KEGG:SE1169 NR:ns ## KEGG: SE1169 # Name: not_defined # Def: elastin binding protein # Organism: S.epidermidis # Pathway: not_defined # 1 484 10 472 472 284 84.0 6e-75 MIVVSNNNFKDDFEKNRQSINPDEHQRDLKEDDKTNENNKEVDSQNSVSNNSNQQFPPRN AQRRKRRRETATNQSKHQDDKHQKNSDAKTTEGSLDDRYDEAQLQQQHDNSQQQNKIEKQ SQDSRMIDGKDAAIVNGKSESSEHKSKSTQNRPGPKAQQQKDKSESTQSKSSTNKDKKVA TGAGIAGAAGVAETSKHHHNKKNKQDSKQSNHENDEKSVKNDDKKQSKKGKKAAVGAGAA AGVGAAGAAHHNKQNKHHNEEKNSSQNNQYNNHSDDKKKGGFMKILLPLIAAILILGAIA IFGGMALNNHNDSKSDDQKIANQSKKDSDKKDGEQSGDNKDKNHDSKKDKKSDSDKKAND DSDKKANDDSDKKANDDSDKNTNDDSDNSSSNPNATSTNNNVNVANNNSNYTNQNQQDNA NQNSNNQQTTQGQQSHTVYGQENLYRIAIQYYGEGTQANVDKIKRANGLSSNNIHNGQTL VIPQ >gi|224999886|gb|ACJC01000114.1| GENE 152 195999 - 197378 1030 459 aa, chain - ## HITS:1 COG:SA1313 KEGG:ns NR:ns ## COG: SA1313 COG0514 # Protein_GI_number: 15927063 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Staphylococcus aureus N315 # 1 457 1 457 459 676 69.0 0 MLKDNLKKWFGFDEFKEGQEEIIDSVLHGKHTLGILPTGSGKSLCYQLPTYILEKPTLII SPLISLMDDQVMQMKLKGETHVACIHSGMDEVEKRDNIKRLSKSRFIYLSPEYILQPHNF KYIAHINFGLIVLDEAHCLSEWGYDFRPHYALVGKIIHHFNSATVLALTATAPPQLETDL SHILSLKLNVVQKSMNRKNISLQHFNFNDDEGKIEWLLPFLSNSGPTIIYVSSKKRCLEL AQMIYDSGYLTGIYHGDLSYQERQTVQQQFFNNDIPVIVATSAFGMGINKKDIRTVIHFH LSSSPSNYLQEIGRAGRDGKQSQAISLFQPDDSFILETLLFTDMITDDDITMFEMGNHLP DEKEKILSTLNLQFTFSQLKDIFHQSYQRKRLGYMRMMGYTNLDQCRRKYLLEFFGEHPQ SPKQCCDQDSSLESIQILNRKKVKRKLSFNEKLYNLFET >gi|224999886|gb|ACJC01000114.1| GENE 153 197365 - 198303 592 312 aa, chain - ## HITS:1 COG:SA1314 KEGG:ns NR:ns ## COG: SA1314 COG4955 # Protein_GI_number: 15927064 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 308 9 314 317 270 51.0 2e-72 MSHAFNYKTNKSIYNILIGKKSHQTFFDASSQQLLSLYHSLPNLKYSTFEQFILQKDDFE KSIQVKIHPQYTYDSLTQTFSCIQLLIQTLSHKRKESNTFIPIVQNTYVQQRVKQIYQQV IESNQVSKTIDEIYLLFENLNNKANHTFLHYYLQGYEESMYTRQQISLIEGIPQSELFER EMNELIALLNQLKDSTKYPILSQAIILSPLQSNTYLSYQKLKSGLNLKEIAQQQNVKLNT IEDHVLEMYIKGYLIDYTLFINKKDILEFINYYQNHRGKRLKFHKEHFNDWTYFQIKLVI VGIERGDLIAER >gi|224999886|gb|ACJC01000114.1| GENE 154 198436 - 198684 406 82 aa, chain + ## HITS:1 COG:SA1315 KEGG:ns NR:ns ## COG: SA1315 COG1141 # Protein_GI_number: 15927065 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Staphylococcus aureus N315 # 1 82 1 82 82 104 93.0 4e-23 MAKYTIVDMDTCIACGACGAAAPDIYDYDDEGIAYVILDDNQGTAEVPEELYEDMEDALE GCPTDSIKIEDEPFDGDALKFE >gi|224999886|gb|ACJC01000114.1| GENE 155 199084 - 199623 412 179 aa, chain - ## HITS:1 COG:SA1316 KEGG:ns NR:ns ## COG: SA1316 COG3601 # Protein_GI_number: 15927066 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 179 1 179 181 213 74.0 1e-55 MQQNKRLITISMLSAVAFVLTFIKFPLPFIPPYLTLDFSDVPTLLATFLLSPIAGIIVAL IKNILNFLFNIGDPVGPVANFLAGVSFLLSSYYVYRKRRNNRSLIYGLITGTIVMTIVLS ILNYFVLLPLYGMIFNLGDVLNNVKIVIVSGVIPFNLIKGIIISIIFVLLFRRLRHIIK >gi|224999886|gb|ACJC01000114.1| GENE 156 200222 - 201982 1889 586 aa, chain - ## HITS:1 COG:SA1322 KEGG:ns NR:ns ## COG: SA1322 COG0642 # Protein_GI_number: 15927072 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 581 7 586 588 752 71.0 0 MNRLNSVVIKLWLTIILIVATVLILLSVSLITFIQYYFTQETEYAIKEDAKRISSLVEKS HNKTLAIQNSQTLIDGPGGLIIMNDMSEKPDSSYKDTKKQMFNEIKKSTKFKKVFKEGEY ETQNITIKNKGNSQSYLLLGYPMKAQKGAQSNYSGVFIYKDLKSIEDTNNAITIIILITA IIFTIASTIFAFFLSNRITKPLRQLKTQAQKVSEGDYSQISTVATKDEIGDLSRAFNNMN VEIQEHIKAISSSKNIRDTLLNSMVEGVLGINNQREIILSNKMADDIMRHIDDFSKESIE QQIEATFESQENEYLELEINTRYYVFISSYIDSIQTNGRSGIVMVIRDMTNEHNLDQMKK DFIANVSHELRTPISLLQGYTESIVDGIVTEPDEIRDSLAIVLDESKRLNRLVNELLNVA RMDAEGLSVEKELQPIQHLLDKMESKYRMQSEELGLTMTFDSNNEEQLWNYDMDRMDQVL TNLIDNATRYTQAGDSIKISIEEDSDFNILTITDTGTGIAPEHLKQVFDRFYKVDAARKR GKQGTGLGLFICKMIIEAHGGRIDVESELGKGTSFIIRLPKSKQIS >gi|224999886|gb|ACJC01000114.1| GENE 157 201966 - 202691 975 241 aa, chain - ## HITS:1 COG:SA1323 KEGG:ns NR:ns ## COG: SA1323 COG0745 # Protein_GI_number: 15927073 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 241 1 241 241 417 90.0 1e-117 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD GIEVASKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT QTANTEQSEPHARDIIEFSHLVIDNDAHRVLADNQQVNLTPKEYELLIYLAKTPNKVFDR EQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSDAAQMIQTVWGVGYKFEVKPSDEPT K >gi|224999886|gb|ACJC01000114.1| GENE 158 202825 - 203562 813 245 aa, chain - ## HITS:1 COG:SA1324 KEGG:ns NR:ns ## COG: SA1324 COG1187 # Protein_GI_number: 15927074 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Staphylococcus aureus N315 # 1 245 1 245 245 370 83.0 1e-102 MSKEQERLQKRIAKSGYTSRRKAEVLITEGRVKVNGQTVTELGSKVMPSDLVEVDGIKIE QEDKIYILFYKPTQVITSVSDDRGRRVVTDYFDDLESRIYPVGRLDYDTSGVLLLTNDGE FTNLMTHPRYHIKKKYIAKLKGYLMREEIKQLEKGIELEDGYTQPAQVKIKKQDKEKNTT LVEITISEGRNRQVRRMFEYFGHQVNKLVRIQFGPIDLKGLNAGEGRVLTPHEVKTLRHL AENGK >gi|224999886|gb|ACJC01000114.1| GENE 159 203555 - 204097 557 180 aa, chain - ## HITS:1 COG:SA1325 KEGG:ns NR:ns ## COG: SA1325 COG1386 # Protein_GI_number: 15927075 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Staphylococcus aureus N315 # 1 180 1 180 180 235 71.0 4e-62 MDNIAILEALLYTSGDEGLEQKQIIDILDINLNQLEDLVSRYHSHGLTIQRYGSTYVLTT KKETSTYIEQLVKEKSKMKLSQAAMETLSIIAYNQPLTRGDIEMIRGINSDGAVKTLIAR GLVEAKDVDHSRSHHLLTTDLFLNVFGIENLDALPTTEEDEAEMDEFFSNLVNQKGESNE >gi|224999886|gb|ACJC01000114.1| GENE 160 204090 - 204890 685 266 aa, chain - ## HITS:1 COG:SA1326 KEGG:ns NR:ns ## COG: SA1326 COG1354 # Protein_GI_number: 15927076 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 20 266 5 251 251 384 83.0 1e-106 MYSCYNNLVKYALTTQFDIEVDVMYEVKLDAFNGPLDLLLHLIQKYEIDIYDIPMKALTE QYMQYVHAMNQLEINVASEYLVMASELLMIKSKLLLPQSSIEEDIEEDPREDLVGRLIEY QNYKEYTEILNTMKEERDLYFTKHPTDLTHLETNESWDPNQTIDLTELIVAYQRVKNRVE LNTPKSVEIKKETFTIQQATAQVTERLKQHESFNFFSLFTFHEPVEQVVTHFLAILEMSK SGIVNIKQTKQFDDIDIIRGVNYSIG >gi|224999886|gb|ACJC01000114.1| GENE 161 204919 - 205443 447 174 aa, chain + ## HITS:1 COG:SA1327 KEGG:ns NR:ns ## COG: SA1327 COG1547 # Protein_GI_number: 15927077 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 166 1 166 168 176 55.0 2e-44 MEQSLMDYYYQFHKHQHYFLCHDILEDAWKSQNTFSKHDAVVSLILFATANYHYRRGNLK GALKSFEKALLTINHAKDATQLHLNINEFKELIMKRIEAVKLQKHFTPLQLPIEPEFRTL IKRKYPDYLFTSQIIKEPYIVDHHIKRDRTEVIKNRERALFHRQYRNKSNKKDQ >gi|224999886|gb|ACJC01000114.1| GENE 162 205496 - 206383 717 295 aa, chain - ## HITS:1 COG:SA1328 KEGG:ns NR:ns ## COG: SA1328 COG4974 # Protein_GI_number: 15927078 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Staphylococcus aureus N315 # 1 295 1 295 295 500 84.0 1e-141 MNNIIDEYLNFIQIEKGLSNNTIGAYRRDLKKYKDYLEDNKISHIDFIDRQIIQECLGHL IDMGQSSKSLARFISTIRSFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEIDEVIALL ETPDLAKNNGYRDRTMLELLYATGMRVTEIIQLDVEDVNLMMGFVRVFGKGNKERIVPLG DTVIEYLTTYIETVRPQLLKQTTTQALFLNMHGKSLSRQGIWKIIKQYGLKANINKTLTP HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYTQFHPRA >gi|224999886|gb|ACJC01000114.1| GENE 163 206426 - 206875 330 149 aa, chain - ## HITS:1 COG:SA1329 KEGG:ns NR:ns ## COG: SA1329 COG0735 # Protein_GI_number: 15927079 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 148 1 148 149 258 93.0 2e-69 MEERLNRVKQQLQQSSYKLTPQREATVRVLIENEKDHLSAEDVYLKVKDKAPEIGLATVY RTLELLAEIKVLDKINFGDGVARFDLRKEGATHFHHHLVCMECGKVEEIEEDLLPEVENR VENEFNFKILDHRLTFHGVCSECQAKNKQ >gi|224999886|gb|ACJC01000114.1| GENE 164 206980 - 207522 643 180 aa, chain - ## HITS:1 COG:SA1330 KEGG:ns NR:ns ## COG: SA1330 COG0494 # Protein_GI_number: 15927080 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 1 180 1 180 180 241 69.0 6e-64 MRLNEKTIDRTVIYNGSIIDLEVHDVELPDGSTSKRELVFHHGAVAVCAITPENEVLLVK QFRKAADQPLLEIPAGKLEQGEDRKEAAIRELQEETGYIASDLQFVTNMYGSPGFSSEKL SIYFTDQLTIGETNLDADEFVELQKVPLNQIDSLLKDNKIEDAKTIIALQHLLLNYNHSK >gi|224999886|gb|ACJC01000114.1| GENE 165 207605 - 208513 1043 302 aa, chain + ## HITS:1 COG:SA1331 KEGG:ns NR:ns ## COG: SA1331 COG0667 # Protein_GI_number: 15927081 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 301 1 301 302 457 76.0 1e-128 MQKNILKSGIEISELGLGCMSLGTDYKKAQPIIESAIDHGITYFDTADIYDQGVNEEIVG KALKKYQNRDDIVIGTKVGNRLTDDGHMTWDPSKKHIKESVKGSLKRLGLNHLDLYQLHG GTIDDPLDETISAFDELKQEGYIRAYGISSIRPNVIDYYLKNSQIETLMSQFNLIDNRPE SLINDVHDKQVKILARGPVFKGLLTSKSVDVIDEKFENGVLDYTQDELGSTIASIKELES NLTALSFKYLTSHDAMGSIIVGASNVEQLEENVRNYYKEISLDQIKSARNRVKDIEYTQH LK >gi|224999886|gb|ACJC01000114.1| GENE 166 208726 - 209484 512 252 aa, chain - ## HITS:1 COG:SA1333 KEGG:ns NR:ns ## COG: SA1333 COG0300 # Protein_GI_number: 15927083 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Staphylococcus aureus N315 # 1 251 1 250 251 277 54.0 1e-74 MIGKHFIITGATSGLGYAITNELLQRGAHVTILARNIDKFNRIKENYFKPEHINVIKCDL MQRKDIESLQAFLTTPINGFIYSSGVGYFKSINEHSTREILETYEVNLTNFNLLYKVIQP QLVKAAYIVGISSQAALVSQANTAHYGASKAGFSAVLNALRLEQPELKVLNAQLGPIDTP FHKNADPTLKYFKNYRHMMMQPQQLAKRIVEGIILNKIEINQPSWMQIMLKFYQLCPRTL EKFCPKLFKNKV >gi|224999886|gb|ACJC01000114.1| GENE 167 209646 - 210461 937 271 aa, chain + ## HITS:1 COG:SA1334 KEGG:ns NR:ns ## COG: SA1334 COG0345 # Protein_GI_number: 15927084 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Staphylococcus aureus N315 # 1 271 1 271 271 457 85.0 1e-128 MKLVFYGAGNMAQAIFTGIINSNNLNANDIYLTNKSNEQALKSFAEKLGVNYSYDDEALL KDADYVFLGTKPHDFENLANRIREHITNDNRFISIMAGLSIDYIRQQLNTNNPLARIMPN TNAQVGHSVTGISFSNNFDPKSKNEVDELINAFGSVIEVSEEHLHQVTAITGSGPAFLYH VFEQYVKAGTELGLERNQVEESIRNLIIGTSKMIERSDLSMSQLRKNITSKGGTTQAGLD ALSQYDIVSMFEDCLGAAVNRSMELSHKEDE >gi|224999886|gb|ACJC01000114.1| GENE 168 210511 - 211431 814 306 aa, chain - ## HITS:1 COG:SA1335 KEGG:ns NR:ns ## COG: SA1335 COG1234 # Protein_GI_number: 15927085 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Staphylococcus aureus N315 # 1 306 1 306 306 462 71.0 1e-130 MEVTFFGTSAGLPTKERNTQSIALNLEPYSNSIWLFDVGEGTQHQILRHSIKLGKIDHIF ITHMHGDHIFGLPGLLTSRSFQGGENKPLTIIGPKGIQNYIETSLQLSESHLNYSITYIE INQQLAYHHNGFTVQAEMLNHGIPSFGYRIEAPITPGTINVDALRDIGLEPGPKYQEVKL QETFEYKGLIYNSDDFKGKAKPGPIISIFGDTKPCENEYKLANNSDLMIHEATYIEGDKK LANNYHHSHIDDVFNLIKQANVNKSLITHISNRYNIDEVTSIYNELSLDQTSPHFYFVKD FDTFKI >gi|224999886|gb|ACJC01000114.1| GENE 169 211856 - 213340 1198 494 aa, chain + ## HITS:1 COG:SA1336 KEGG:ns NR:ns ## COG: SA1336 COG0364 # Protein_GI_number: 15927086 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Staphylococcus aureus N315 # 1 494 1 494 494 897 89.0 0 MSTKQKHIPCLITIFGATGDLSHRKLFPSIFHLYQQDNLDEHIAIIGIGRRDYNNEQFRD QVKASIQTYVKDTDRIDEFMTHVFYHKTDVSDKDSYQSLLQFSERLDSEFALGGNRLFYL AMAPQFFGVISDYLKSSGLTQTKGFKRLVIEKPFGSDLKSAESLNNQIRRSFKEEEIYRI DHYLGKDMVQNIEVLRFANAMFEPLWNNKYISNIQVTSSEVLGVEDRGGYYESSGALKDM VQNHMLQMVALLAMEAPISLNSEDIRAEKVKVLKSLRQLKPEEVKKNFVRGQYDQGTIDG KQVKSYREEDRVAKDSVTPTFVSGKLTIDNFRWAGVPFYIRTGKRMKSKTIQVVVEFKEV PMNLYYETDNLLDSNLLVINIQPNEGISLHLNAKKNIQGIDTEPVQLSYAMSAQDKMNTV DAYENLLFDCLKGDATNFTHWEELKSTWKFVDAIQDQWTMVEPCFPNYEAGTNGPLESDL LLSRDGNHWWDDIH >gi|224999886|gb|ACJC01000114.1| GENE 170 213671 - 214423 730 250 aa, chain + ## HITS:1 COG:SA1337 KEGG:ns NR:ns ## COG: SA1337 COG2207 # Protein_GI_number: 15927087 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 245 44 288 288 417 84.0 1e-117 MIVGQSPEEYARARKMTIAANDVVNGASRLMDVAKKYRYANSNDFANDFSDFHGISPIQA TTKKDELKIQKRLYIKLSTTENAPYTYRLQETDDISLVGYSRFIPTKQLSNPFNIPDFLE DLLVDGYIKELKRYNDTSPYELFVVSCPLEQGLEIFVGVPSERYPSHLESRFLPGRHYAL FNLQGEIDYATNEAWYYIESSLQLTLPYERNSLYVEIYPLDISFNDPFTKIQLWLPIKQE IYDLDEDYQN >gi|224999886|gb|ACJC01000114.1| GENE 171 214658 - 216313 1467 551 aa, chain - ## HITS:1 COG:SA1338 KEGG:ns NR:ns ## COG: SA1338 COG0366 # Protein_GI_number: 15927088 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Staphylococcus aureus N315 # 1 551 1 548 549 850 76.0 0 MKRNWWKEAVAYQVYPRSFNDSNGDGIGDLPGLIEKLDYLENLGIDVIWLSPMYPSPNDD NGYDISDYKGIMSEFGTMDDFDQLLSSIHQRGMKLILDLVVNHTSDEHPWFIESKSSKAS AKRNWYIWADPKPDGSEPNNWESIFNGSTWEFDESTKQYYFHLFSKKQPDLNWENPDVRQ AVFDMMNWWFEKGIDGFRVDAITHIKKNFEAGDLPIPDGKKFAPAFDVDMNQPGIQEWLQ EMKDKSLSRYDIMTVGEANGVTPNDAEEWVGEEKGKFNMIFQFEHLGLWSTGDTKFDVKA YKQVLNRWQKQLENVGWNALFIENHDQPRRVSTWGDDKNYWYESATSHATAYFLQQGTPF IYQGQEIGMTNYPFESIESFNDVAVKTEYQIVKKEGGDVNQLLDKYKMENRDNARTPMQW NNSINGGFTTGKPWFHVNPNYTEINVKQQLNDKFSILSYYKALIQLKKSDLIYTYGKFSM VDAENEQIFAYTRSFKNNTVLIVANLTNEVSELNLPFELDISSVDIKLHNYHLNDINLDH IKPYEAFVVEI >gi|224999886|gb|ACJC01000114.1| GENE 172 216483 - 217889 1597 468 aa, chain - ## HITS:1 COG:SA1342 KEGG:ns NR:ns ## COG: SA1342 COG0362 # Protein_GI_number: 15927092 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 468 1 468 468 856 89.0 0 MTQQIGVVGLAVMGKNLAWNIESRGYSVSVYNRSRQKTDEMVKESPGKEIHPTYSLEEFV ESLEKPRKILLMVKAGPATDATIDGLLPLLDDDDILIDGGNTNYQDTIRRNKALAESSIN FIGMGVSGGEIGALTGPSLMPGGQKDAYNKVSDILDAIAAKAQDGASCVTYIGPNGAGHY VKMVHNGIEYADMQLIAESYAMMKDLLGMSHKEISQTFKEWNAGELESYLIEITGDIFNK LDDDNEALVEKILDTAGQKGTGKWTSINALELGVPLTIITESVFARFISSIKEERVTASK SLKGPKAHFEGDKKAFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWR EGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSVCNGVPTPGF SASINYYDSYRSEDLPANLIQAQRDYFGAHTYERKDREGIFHTQWVEE >gi|224999886|gb|ACJC01000114.1| GENE 173 217969 - 219093 1266 374 aa, chain - ## HITS:1 COG:SA1343 KEGG:ns NR:ns ## COG: SA1343 COG2195 # Protein_GI_number: 15927093 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Staphylococcus aureus N315 # 1 373 1 373 377 491 68.0 1e-138 MINQKRLLDCFLELVQIDSETGHEETIQPYLKDTFKKMGLNVIEDEASKNDGLGANNLIC TLKSNISHQNVPKIYFTSHMDTVVPGKNIQPVVKEDGYVYSDGTTILGADDKAGLAAIIE AIKQIKESNLPHGQIQIIITVGEESGLVGAKAIDTRLLDADFGYAVDASKDVGTTVIGAP TQVKIYTTIKGKTAHASTPKKGVSAINIASKAISRMKLGQVDALTTANIGKFHGGSATNI IADEVTLEAEARSHDDQSINKQVKHMKETFETTANELGGQAEVLVEKSYPGFEVNETDKV TQYAISSALALGLKGDTCIAGGGSDGNIMNQYGIPSVILGVGYENIHTTSERIAIKDMYM LTRQIIKIIELVAE >gi|224999886|gb|ACJC01000114.1| GENE 174 219470 - 220447 677 325 aa, chain - ## HITS:1 COG:SA1344 KEGG:ns NR:ns ## COG: SA1344 COG4129 # Protein_GI_number: 15927094 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 325 1 325 326 456 77.0 1e-128 MLKLNPYKIGFRTVKTAVGMTLGVIICKLLGLDNYASSAILVVLCIKHTKMHSVQAILSR LVSCLLILFLGSAIFSLLGQHAFVLGLIVLLFIPLTVVLNVQEGVITSCVILLHVFNAKA INGHLILNEIMLLIVGLGIAFLMNLMMPSLDKKLNHFKQDIENQITEIFNIFSQACSMHN DHLNIKFDSLLLNIKKAKSLAFRDVKNHFVRNENSFYHYFDMREEQVELLKRMTSLLEKI NTDDPILEKISQLMYEIGSNVNSNDYTALRLHSLYEIRLSLDDLPLPTTHKILNSRAHII QILNELEEYLNIKSQFGSLKLHSEI >gi|224999886|gb|ACJC01000114.1| GENE 175 220460 - 220897 495 145 aa, chain - ## HITS:1 COG:no KEGG:SE1195 NR:ns ## KEGG: SE1195 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 145 1 145 145 280 99.0 1e-74 MDLNFDLYMNDVVEQARNEIEHAGYQQLTSAEDVDQVLQQKGTSLVMVNSVCGCAGGIAR PAAAHALHYDKLPQRLVTVFAGQDKEATQQAREYFEGYAPSSPSFALIKDGKITEMIERH QIEGHDVMDVINQLQSLFDKYCEER >gi|224999886|gb|ACJC01000114.1| GENE 176 221102 - 222409 1436 435 aa, chain - ## HITS:1 COG:SA1346 KEGG:ns NR:ns ## COG: SA1346 COG0508 # Protein_GI_number: 15927096 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 435 5 424 424 531 69.0 1e-151 MPKLGESVHEGTIEQWLVSVGDHVDEYEPLCEVITDKVTAEVPSTISGTITELVVEEGQT VNINTVICKIDSENDQNQTESANDFKEEQNQHSQSNVKGSQFENNPNTHEIEEHTASSRA NNNGRFSPVVFKLASEHGIDLTQVIGTGFEGRVTKKDIQNIINNPNNQEKEKEFKQTDEK DHSINHGDFLHQSSSKNENAPLSNERVVPVKGIRKAIAQNMVTSVSEIPHGWMMVEADAT NLVQTRNHHKVQFKQNEGYNLTFFAFFVKAVAEALKANPLLNSTWQGDEIVIHKDINISI AVADDDKLYVPVIKNADEKSIKGIAREINDLATKARLGKLSQSDMQNGTFTVNNTGSFGS VSSMGIINHPQAAILQVESIVKKPVVIDDMIAIRNMVNLCISIDHRILDGVQTGKFMNLV KKKIEQYSIENTSIY >gi|224999886|gb|ACJC01000114.1| GENE 177 222434 - 223417 1007 327 aa, chain - ## HITS:1 COG:SA1347 KEGG:ns NR:ns ## COG: SA1347 COG0022 # Protein_GI_number: 15927097 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Staphylococcus aureus N315 # 1 327 1 327 327 601 89.0 1e-172 MTKLSYLEAIQNAQDLALNHFSNAFILGEDVGKKGGVFGTTKGLQSKYGDERVIDTPLAE SNIIGTAIGAAMLGKRPIAEIQFADFILPATNQIISEAAKMRYRSNNDWNCPLTIRAPFG GGVHGGLYHSQSVESIFASTPGLTIVIPSSPYDAKGLLLSSIESNDPVLYFEHKKAYRFL KEEVPETYYTVPLGKADVKRSGEDITVFCYGLMVNYCLQAADILASDGIDVEVVDLRTVY PLDKATIIERSQRTGKVLLVTEDNLEGSIMSEVSAIIAENCLFDLDAPIMRLAAPDVPSM PFSPTLENEIMMNPEKIQEKMRELAQF >gi|224999886|gb|ACJC01000114.1| GENE 178 223410 - 224408 966 332 aa, chain - ## HITS:1 COG:SA1348 KEGG:ns NR:ns ## COG: SA1348 COG1071 # Protein_GI_number: 15927098 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Staphylococcus aureus N315 # 1 327 1 327 330 541 81.0 1e-154 MIDYKSAGLTEEDLKKIYKWMDLGRKTDERLWLLNRAGKIPFVVSGQGQEATQIGMAYAM QKGDISSPYYRDLAFVTYMGISPLDTMLSAFGKRDDINSGGKQMPSHFSHKEKGILSQSS PVATQIPHSVGAALALKMDNKPNIATATVGEGSSNQGDFHEGMNFAAVHKLPFVCVIINN KYAISVPDSLQYAAEKLSDRALGYGMHGIQVDGNDPIAVYKAMKEARERALAGEGPTLIE AVTSRMTPHSSDDDDTYRSKEERDLLKQEDCNIKFKTALLDQGIINENWLSQLETEHKEL INEATKSAEAAPYPSVEEALTYVYEEGGQQND >gi|224999886|gb|ACJC01000114.1| GENE 179 224423 - 225844 705 473 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5 473 3 458 458 276 35 8e-73 MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV NHTIKNAHTFGIDVNHFKINFPKILERKDAIVKQLHKGVNQLMKHHHIDIYNGIGRIMGT SIFSPQSGTISVEYEDGESDILPNKNVLIATGSSPQSLPFINFDHQQILSSDDILRLNTL PQRLAIIGGGVIGLEFASLMNDLGTDVVVIEANDRVLPTESPQVASLLKEELTDRGVTFY ENIQLTKEHFNQTDKGVTINISDEPVQFDKVLIAIGRKPNTNDIGLNNTKIKTSDAGHII TNAYQQTEDKHIYAAGDCIGQLQLAHVGSKEAIVAVEHMFDCSPIPVNYDLIPKCVYTNP EIASIGKNLEQAKKAGLKAKSIKVPFKAIGKAMIEDVTQSKGFCEMVVNKDDDEIIGLNM IGPHVTELINEISLLQFMNGSSLELGLTTHAHPSLSEVVMELGLKANGQAIHV >gi|224999886|gb|ACJC01000114.1| GENE 180 226107 - 227783 1604 558 aa, chain - ## HITS:1 COG:SA1350 KEGG:ns NR:ns ## COG: SA1350 COG0497 # Protein_GI_number: 15927100 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 556 1 556 559 812 85.0 0 MLQTLSIKQFAIIDELDINFSDGLTVMSGETGSGKSIIIDAIGQLIGMRASSDYVRHGEK KAIIEGIFDIDESKDAIKILESLAIDVDEDFLLVKREIFSSGKSICRINNQTVTLQDLRK VMQELLDIHGQHETQSLLKQKYHLQLLDDYADNQYSDLLNQYQLSYKQYKNKRKELEELE SADQALLQRLDLMKFQLEELTEASLKEGEVDQLESDIKRIQNSEKLNLALNNAHQVLTDE NAIPDRLYELSNYLQTINDIVPEKFVRLKEDIDQFYYILEDAKHEIYDEMANTEFDEQVL NEYESRMNLLNNLKRKYGKDITELIGYQSKLANEIDKIENYEQSTSQLREEIKTLYNEVI DIGKKLSQERRRVARELRDHIVSEIQNLQMKDANLEISFKPLDEPTIEGIEFVEFLISPN RGEPLKSLNKIASGGELSRIMLALKSIFVKSRGQTAILFDEVDSGVSGQAAQKMAEKMRD IAQYIQVICISHLPQVASMSDHHLLISKASNADRTITQVKELKDENKIDEIARMISGASV TELTRENAKEMIKQNHNI >gi|224999886|gb|ACJC01000114.1| GENE 181 227799 - 228251 304 150 aa, chain - ## HITS:1 COG:SA1351 KEGG:ns NR:ns ## COG: SA1351 COG1438 # Protein_GI_number: 15927101 # Func_class: K Transcription # Function: Arginine repressor # Organism: Staphylococcus aureus N315 # 1 150 1 150 150 273 90.0 1e-73 MPKKSVRHIKIREIISNEQIETQDELVKRLNEYDLNVTQATVSRDIKELQLIKVPAPTGQ YVYSLPNDRRYHPLEKLGRYLMDSFVNIEGTGNLLVLKTLPGNAQSIGAILDQIDWDEVL GTICGDDTCLLICRNEEASEEIKTRIFNLL >gi|224999886|gb|ACJC01000114.1| GENE 182 228569 - 229450 938 293 aa, chain - ## HITS:1 COG:SA1352 KEGG:ns NR:ns ## COG: SA1352 COG0142 # Protein_GI_number: 15927102 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Staphylococcus aureus N315 # 1 293 1 293 293 370 69.0 1e-102 MKKLQMNKLIDIINTSLNKSIQSSPLKTNLEESMKYSLNAGGKRIRPVILLLTLKMLNKD YQQGLNSALALEMIHTYSLIHDDLPAMDNDDYRRGELTNHKVYGEWKAILAGDALLTKAF ELVSNDTTIEDSVKVNIIQRLSKASGHLGMVGGQALDMESEGKSIRLETLESIHKTKTGA LLNFSVMAAVDIAQVEQNIAKNLDEFSHHLGMMFQIKDDLLDVYGDESKLGKKVGSDIVN HKSTYVSLLGKDGAEEKLNNHQCLALNCLNQISDQYDTSELSDIVDLFYNRDH >gi|224999886|gb|ACJC01000114.1| GENE 183 229428 - 229658 339 76 aa, chain - ## HITS:1 COG:SA1353 KEGG:ns NR:ns ## COG: SA1353 COG1722 # Protein_GI_number: 15927103 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Staphylococcus aureus N315 # 1 76 1 76 76 63 76.0 6e-11 MSKEKQSFEEMMKELENIVQKLDNEAVSLEESLDLYQRGMKLSANCDSTLKEAEKKVNEL MQEEVGDEGNEETADE >gi|224999886|gb|ACJC01000114.1| GENE 184 229651 - 230988 903 445 aa, chain - ## HITS:1 COG:SA1354 KEGG:ns NR:ns ## COG: SA1354 COG1570 # Protein_GI_number: 15927104 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Staphylococcus aureus N315 # 1 445 1 445 445 640 76.0 0 MTEYLSVSALTKYIKYKFDQDPHLQSVLIKGELSNFKKHSSGHLYFNVKDKESVISAMMF KGNASKLGFEPKEGDEVLIEARVSVYERRGNYQIYVNKMQIDGIGNLYQKLEQLKKKLKK EGYFDQSNKKLIPKYPKKIAVLTASTGAAIRDIHSTINNRYPLVEQIQISTLVQGTQARQ DIIKKIQYADSLDVDTIIVGRGGGSIEDLWNFNEEDVVKAIFNCQTPIISAVGHETDFTL SDFVADVRAATPTQAAVIATPDQYELLQQIKQYEYTLSRYIKQYIEHQKKQLNHISSYYK FKQPSLLYDQQIQKRDELERQLNLLLNTKVEKSKHHLKLLQQSFNFKNLNQQITQEKQSV YQLHSRLSKIMSNNITNLKTVLKNKLENLNNLSPTNTMLRGYAIVNKDDEVITSTHKLNE NDKISLTMKDGSVDAMVKKVRCNDE >gi|224999886|gb|ACJC01000114.1| GENE 185 231003 - 231392 573 129 aa, chain - ## HITS:1 COG:SA1355 KEGG:ns NR:ns ## COG: SA1355 COG0781 # Protein_GI_number: 15927105 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Staphylococcus aureus N315 # 1 127 1 127 129 191 80.0 3e-49 MSRKDARIQAFQTLFQLEIKETDLTIQEAIEFIKDDHSDLDFDFIYWLVTGVKDHQIVLD DTIKPHLKDWSIDRLLKSDRIILRMATFEILHSDTPKKVVVNEAVELTKQFSDDDHYKFV NGVLSNIND >gi|224999886|gb|ACJC01000114.1| GENE 186 231469 - 231831 467 120 aa, chain - ## HITS:1 COG:SA1356 KEGG:ns NR:ns ## COG: SA1356 COG1302 # Protein_GI_number: 15927106 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 120 1 120 120 171 83.0 3e-43 MVNVADYSQSNLGKIEIAPEVLSVIASIATSEVEGITGHFAELKKTNLEKISRKNLNRDL KIEAKEDGIYIDVFCSLKHGVNISKTANQIQSAIFNSITTMTAIEPQQINIHIRSIVAEK >gi|224999886|gb|ACJC01000114.1| GENE 187 231843 - 233201 1415 452 aa, chain - ## HITS:1 COG:SA1357 KEGG:ns NR:ns ## COG: SA1357 COG0439 # Protein_GI_number: 15927107 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Staphylococcus aureus N315 # 1 449 1 449 451 817 88.0 0 MKKILIANRGEIAVRIIRAAHDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTLSKDSYL NIPNILSIATSTGCDGVHPGYGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKA EMIKANVPVVPGSEGLIQSIDDAKKTAKKIGYPVIIKATAGGGGKGIRVARDEKELETGY RMTQQEAETAFGNGGLYLEKFIENFRHIEIQIIGDTYGNVIHLGERDCTIQRRMQKLVEE APSPVLSEDKRQEMGNAAIRAAKAVNYENAGTIEFIYDLDDNQFYFMEMNTRIQVEHPVT EMVTGVDLVKLQLKVAMGEALPFKQEDISINGHAIEFRINAENPYKNFMPSPGKITQYLA PGGFGVRIESACYTNYTIPPYYDSMVAKLIVHEPTREESIMTGIRALSEYLVLGIDTTIP FHLRLLNNHIFRSGEFNTKFLEKYNIMDDNNQ >gi|224999886|gb|ACJC01000114.1| GENE 188 233201 - 233674 586 157 aa, chain - ## HITS:1 COG:SA1358 KEGG:ns NR:ns ## COG: SA1358 COG0511 # Protein_GI_number: 15927108 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Staphylococcus aureus N315 # 1 157 1 154 154 176 71.0 1e-44 MNFKEIKELIEILDQSNLTEINIEDNKGSVVNLKKEKETEIVTPQVTQQPTQPITHAQID NETQQKPSHSYNDEQSSDNNYNTINAPMVGTFYKSPSPDEEAYVQVGDKVTNDSTVCILE AMKLFNEIQAETTGEIVEILVEDGQMVEYGQPLFKVK >gi|224999886|gb|ACJC01000114.1| GENE 189 233933 - 235060 1103 375 aa, chain - ## HITS:1 COG:lin1630 KEGG:ns NR:ns ## COG: lin1630 COG4992 # Protein_GI_number: 16800698 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Listeria innocua # 1 375 1 376 384 364 47.0 1e-100 MSYLFNNYKRDNIEFVDANENELIDKDNNVYLDFSSGIGVTNLGFNMEIYQAVLNQLNLI WHSPNLYLSSIQEEVAQKLIGQQDYLAFFCNSGTEANEAAIKLARKATGKSEIIAFKKSF HGRTYGAMSATGQKKITDQFGPVVPGFKFAIFNDFNSFKSLTSYNTAAVIIEIIQGESGV LPADPLFVKQLNEYCIQKDILIIVDEVQTGIGRTGKLYAHEHYQLSPDIITLAKGLGNGL PIGAMLGKKNLGHAFGYGSHGTTFGGNRLSLAAANQTLTIINHADLMNDVQSKGQFLIEN LRKGLANKRNVIEVRGIGLMVGIEINNDPIQIVREAKRRGLIILTAGTNVIRLLPPLSIT KKQLEKGIEILTEII >gi|224999886|gb|ACJC01000114.1| GENE 190 235063 - 235800 622 245 aa, chain - ## HITS:1 COG:lin1631 KEGG:ns NR:ns ## COG: lin1631 COG0548 # Protein_GI_number: 16800699 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate kinase # Organism: Listeria innocua # 1 243 1 244 250 148 38.0 1e-35 MKNIIVIKLGGIAIENLNDAFIQQIKAWHLENKKIIIVHGGGQVISDLLTKNNHSTIKID GMRVTAKNDLPIIYDALINIVGHQLLVRLKESNLEFFQFKEKIKELVSAEFLNKNIYGYV GKVKEINTMLLENILSRDIIPIITSLGVNEQGEYLNVNADHLATAIAKKLKVEKLVYMTD VPGVIEKDKTLATLTIKEAKTKIENKIITGGMIPKIESAIQTVESGVESILIANNLQKGT IIRGD >gi|224999886|gb|ACJC01000114.1| GENE 191 235810 - 237003 1063 397 aa, chain - ## HITS:1 COG:lin1632 KEGG:ns NR:ns ## COG: lin1632 COG1364 # Protein_GI_number: 16800700 # Func_class: E Amino acid transport and metabolism # Function: N-acetylglutamate synthase (N-acetylornithine aminotransferase) # Organism: Listeria innocua # 1 397 1 398 398 409 57.0 1e-114 MNIIKGNIASPLGFAADGLHAGFKKKKLDFGWIVSEVPANVAGVFTTNKVIAAPLKLTKN SIEKSGKMQAIVVNSGIANSCTGKQGEKDAFKMQQLAANKLQIQQEYVGVASTGVIGKMM PMSILENGFSKLVKNGNADDFAKAILTTDTHTKTCVVNEVFGNDTVTMAGVAKGSGMIHP NLATMLAFITCDANISSQTLQQALKDVVEVTFNQITVDGDTSTNDMVLVMSNGCTNNNEI KKDSEDYYKFKQMLLYIMTDLAKSIARDGEGASKLIEVTVKGAKESSAARMIAKSVVGSS LVKTAIFGEDPNWGRIIASAGYAKTNFDINQVDIFIGRIPVLIRSSPIKYDKEEIQEIMS AEEISIELDLHQGNYEGQAWGCDLSYDYVKINALYTT >gi|224999886|gb|ACJC01000114.1| GENE 192 237021 - 238046 748 341 aa, chain - ## HITS:1 COG:L0104 KEGG:ns NR:ns ## COG: L0104 COG0002 # Protein_GI_number: 15672779 # Func_class: E Amino acid transport and metabolism # Function: Acetylglutamate semialdehyde dehydrogenase # Organism: Lactococcus lactis # 3 338 4 338 340 343 51.0 2e-94 MHISIVGITGYTGLELLRLALNHPHITVSSIHATKEVGVQISDIFPHLKGICDKEIQAFD SEFIMTHSDLVFFATPSGVAKDLSKNFVNNNFPVIDLSGDHRLSPDVYLKWYKKSPCTVD IQKRFTYGLSEVMNISHCNRFIANPGCYATATELALYPLISNHLIRVDSIIVDAKSGLTG AGKKLNQSTHYVNVNNNYVTYKLNKHQHIPEIVQTLQFFNKNLQNIQFSTSLIPVNRGIV ATIYTQLESGVKINQIESTYKTVYKNKPFIRIKDGLPQLNEVIGTNYTDIGFVYNETTGV LTISSVIDNLIKGAAGQAIQNMNLMFNFDETDGLILAPLYI >gi|224999886|gb|ACJC01000114.1| GENE 193 238196 - 238753 763 185 aa, chain - ## HITS:1 COG:SA1359 KEGG:ns NR:ns ## COG: SA1359 COG0231 # Protein_GI_number: 15927109 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Staphylococcus aureus N315 # 1 185 1 185 185 321 90.0 6e-88 MISVNDFKTGLTISVDNGIWKVIDFQHVKPGKGSAFVRSKLRNLRTGAIQEKTFRAGEKV EQAMIENRRMQYLYADGDNHVFMDNETFDQIELPGDYLKDELNYLKANMEVQVQSYESEV IGVELPKTVELEVTETEPGIKGDTATGATKSATVETGYTLNVPLFVNEGDTLVINTSDGS YISRG >gi|224999886|gb|ACJC01000114.1| GENE 194 238780 - 239841 1061 353 aa, chain - ## HITS:1 COG:SA1360 KEGG:ns NR:ns ## COG: SA1360 COG0006 # Protein_GI_number: 15927110 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 1 352 1 352 353 536 75.0 1e-152 MNKLRKVQDIIEHKHLDAIIVLSDYNRRYLSDFTGTSGALIITPKKQYLITDFRYIDQAT EQAQDFEIINRKSSLISEIKCILERENLSNIGFEGHLISYDTYVELNKGLITLISISNEI DKIREIKNKEEIQLIQQAAKIVDQTYEYILTQVSIGMTEREIKAKLESKMLELGADGPSF DTIVASGYRGALPHGVASDKRIEKGDMITLDFGAYYRGYCSDITRTFAIGEPDPKLKEIF NIVLTSQKKAIEEIKPGMTAKEADAISRKYISSHNYGEQFGHSLGHGIGLDIHEGPLLSQ NSSDELNINNCVTIEPGIYIEGLGGVRIEDDILITENGCHVFTNCSKDLIILE >gi|224999886|gb|ACJC01000114.1| GENE 195 239944 - 240522 666 192 aa, chain + ## HITS:1 COG:no KEGG:SERP1095 NR:ns ## KEGG: SERP1095 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 192 1 192 192 230 96.0 3e-59 MKKLILIVGASSLLMGCGSQNLSPLEDKTTELRDDNHQLKLDIQELNQEIGEHKSKIAAL KQDKENTKEASSNKLKIKNLKASSDYYDSIAKAIKDYRDIESKVNKNNNKVTIQRKLDDI SNNIDSSFIKYKESVDSESQSEEDKKKEKEIRQLNKDLSSAFNTIKKGYETKDNKKIEKG QKKLATINTNLN >gi|224999886|gb|ACJC01000114.1| GENE 196 240536 - 240754 248 72 aa, chain + ## HITS:1 COG:no KEGG:SAB1404 NR:ns ## KEGG: SAB1404 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_RF122 # Pathway: not_defined # 1 72 1 72 72 71 68.0 1e-11 MRKFIFYLILAIAAFGLMMNLDEFLFSIMKAIISFAIIALIIYIIYYFFFLTEDQRKYKK ALRKYKRQKRKQ >gi|224999886|gb|ACJC01000114.1| GENE 197 240795 - 241625 1014 276 aa, chain - ## HITS:1 COG:SA1363 KEGG:ns NR:ns ## COG: SA1363 COG0095 # Protein_GI_number: 15927113 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Staphylococcus aureus N315 # 1 276 1 276 276 494 87.0 1e-140 MTEIWNFINTGSKNPYYNMAMDEALLNFVSRGEIDPVIRFYTWNPATLSIGYFQRLQKEI DIDKVKEKGYGLVRRQTGGRGVLHDKELTYSVIVPESHPNMPSTVTEAYKIISQGLLEGF KNLGFETYFAIPRSKEERDKLKQPRSSVCFDAPSWYELVVEGRKIAGSAQTRQKGVILQH GSILQDIDIDDLFDMFIFKNERLKAKMKENFVQKAVAINDISNQHITLNEMENAFKSGFK KGLNIDFKPLELTEKQKEEVQELEEKYRSEAWMYRK >gi|224999886|gb|ACJC01000114.1| GENE 198 241785 - 242171 507 128 aa, chain + ## HITS:1 COG:SA1364 KEGG:ns NR:ns ## COG: SA1364 COG0607 # Protein_GI_number: 15927114 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 128 1 128 128 199 85.0 2e-51 MSISLYIAIGIIVIIIAYMIIQQILNKRAVNELDQNEFHKGLRKAQVIDVREKVDYDYGH INGARNIPITVFKQRFQGLRNDQPIYLCDANGIASYRAARILRKNGYKNIYMLKGGYKKW TGKIKSKK Prediction of potential genes in microbial genomes Time: Sun May 29 07:46:55 2011 Seq name: gi|224999885|gb|ACJC01000115.1| Staphylococcus epidermidis W23144 contig00155, whole genome shotgun sequence Length of sequence - 30906 bp Number of predicted genes - 34, with homology - 33 Number of transcription units - 9, operones - 6 average op.length - 5.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 12/0.000 - CDS 250 - 1758 1745 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 2 1 Op 2 4/0.000 - CDS 1751 - 3097 1409 ## COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain 3 1 Op 3 1/1.000 - CDS 3117 - 4208 1089 ## COG0404 Glycine cleavage system T protein (aminomethyltransferase) - Prom 4360 - 4419 3.4 - Term 4219 - 4269 6.2 4 2 Op 1 . - CDS 4426 - 4938 250 ## COG0703 Shikimate kinase 5 2 Op 2 . - CDS 4940 - 5140 69 ## 6 2 Op 3 . - CDS 5103 - 5594 384 ## COG4940 Competence protein ComGF 7 2 Op 4 . - CDS 5518 - 5736 105 ## SERP1105 hypothetical protein 8 2 Op 5 6/0.000 - CDS 5798 - 6247 159 ## COG2165 Type II secretory pathway, pseudopilin PulG 9 2 Op 6 6/0.000 - CDS 6225 - 6542 338 ## COG4537 Competence protein ComGC 10 2 Op 7 24/0.000 - CDS 6560 - 7399 274 ## COG1459 Type II secretory pathway, component PulF - Prom 7478 - 7537 4.0 11 2 Op 8 1/1.000 - CDS 7599 - 8573 474 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 12 2 Op 9 1/1.000 - CDS 8630 - 9253 745 ## COG0491 Zn-dependent hydrolases, including glyoxylases 13 2 Op 10 1/1.000 - CDS 9253 - 9579 440 ## COG0011 Uncharacterized conserved protein 14 2 Op 11 5/0.000 - CDS 9579 - 10565 650 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 15 2 Op 12 3/0.000 - CDS 10565 - 10765 153 ## COG4483 Uncharacterized protein conserved in bacteria 16 2 Op 13 4/0.000 - CDS 10749 - 12209 1190 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 17 2 Op 14 3/0.000 - CDS 12210 - 12761 546 ## COG0212 5-formyltetrahydrofolate cyclo-ligase - Prom 12782 - 12841 6.3 - Term 12840 - 12897 5.1 18 2 Op 15 1/1.000 - CDS 12942 - 13091 269 ## PROTEIN SUPPORTED gi|27468155|ref|NP_764792.1| 50S ribosomal protein L33 - Prom 13124 - 13183 13.2 19 3 Tu 1 . - CDS 13196 - 15232 2142 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 - Prom 15342 - 15401 6.8 - Term 15416 - 15450 0.1 20 4 Tu 1 . - CDS 15684 - 16283 639 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent - Prom 16310 - 16369 7.5 - Term 16602 - 16644 -0.9 21 5 Op 1 5/0.000 - CDS 16687 - 17106 453 ## COG0735 Fe2+/Zn2+ uptake regulation proteins 22 5 Op 2 42/0.000 - CDS 17109 - 17957 664 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 23 5 Op 3 1/1.000 - CDS 17991 - 18773 266 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 - Prom 18869 - 18928 9.3 - Term 18924 - 18977 6.1 24 6 Op 1 4/0.000 - CDS 18991 - 19881 1004 ## COG0648 Endonuclease IV 25 6 Op 2 2/0.000 - CDS 19891 - 21237 1269 ## COG0513 Superfamily II DNA and RNA helicases 26 6 Op 3 9/0.000 - CDS 21272 - 22372 1108 ## COG0327 Uncharacterized conserved protein 27 6 Op 4 5/0.000 - CDS 22362 - 23051 609 ## COG2384 Predicted SAM-dependent methyltransferase - Prom 23077 - 23136 6.8 28 6 Op 5 31/0.000 - CDS 23206 - 24312 1525 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) - Prom 24357 - 24416 10.5 29 6 Op 6 1/1.000 - CDS 24583 - 26379 1413 ## COG0358 DNA primase (bacterial type) - Prom 26432 - 26491 4.9 - Term 26457 - 26504 2.5 30 7 Op 1 4/0.000 - CDS 26553 - 27371 750 ## COG1806 Uncharacterized protein conserved in bacteria 31 7 Op 2 . - CDS 27383 - 27874 420 ## COG0517 FOG: CBS domain - Prom 28029 - 28088 7.7 + Prom 28056 - 28115 6.1 32 8 Tu 1 . + CDS 28342 - 29733 1613 ## COG0423 Glycyl-tRNA synthetase (class II) + Term 29776 - 29824 0.2 - Term 29764 - 29812 0.2 33 9 Op 1 16/0.000 - CDS 29843 - 30604 600 ## COG1381 Recombinational DNA repair protein (RecF pathway) 34 9 Op 2 . - CDS 30630 - 30905 315 ## COG1159 GTPase Predicted protein(s) >gi|224999885|gb|ACJC01000115.1| GENE 1 250 - 1758 1745 502 aa, chain - ## HITS:1 COG:SA1365 KEGG:ns NR:ns ## COG: SA1365 COG1003 # Protein_GI_number: 15927115 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Staphylococcus aureus N315 # 1 490 1 490 490 837 88.0 0 MISKSSPLIFERSKKDRYAYSLPQNDIENINIASLLDDKYIRKHKAEFPEVSELDLVRHY TELSNKNFGVDTGFYPLGSCTMKYNPKINEKVARISGFSESHPLQEEEHVQGSLEIIYSL QEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHEKNGQSHRDEVIVPDSAHGTNPASA SFAGFKSVTVKSNQRGEVDIEDLKRVVNDNTAAIMLTNPNTLGIFEQNIIEIGKIVHEAG GLLYYDGANLNAILDKVRPGDMGFDAVHLNLHKTFTGPHGGGGPGSGPVGVVEKLASYLP KPMVIKDNDRYKYDNDIPNSIGRVKPFYGNFGIYLRAYTYIRSMGANGLKEVSEAAVLNA NYIKSRLKNHFEIPFNQYCKHEFVLSGTLQKQYGVRTLDMAKRLLDFGVHPPTIYFPLNV EEGMMIEPTETESKETLDYFIDAMIQIANETKNDPDKVLEAPHTTIIDRLDETTAARKPI LKFEELKNEKYKEHTNIDSENN >gi|224999885|gb|ACJC01000115.1| GENE 2 1751 - 3097 1409 448 aa, chain - ## HITS:1 COG:SA1366 KEGG:ns NR:ns ## COG: SA1366 COG0403 # Protein_GI_number: 15927116 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain # Organism: Staphylococcus aureus N315 # 1 448 1 448 448 773 84.0 0 MSHRYIPLTEQDKNEMLNSIGAKSISELFDDIPTDILLKRNLNIAESEAETILLRRLNRL AAKNTTKETHATFLGAGVYDHYTPAVVDAMISRSEFYTAYTPYQPEISQGELQAIFEFQT LICELTDMDVANSSMYDGMTSFAEACILALSHTKKNKIVVSSGLHYQALQILHTYAKTRD EFEIIEVDLKGTITDLEKLEQLIDDNTAAVAVQYPNFYGSIEDLEQINNYIKDKKALFIV YANPLSLGLLTPPGTFGADIVVGDTQPFGIPTQFGGPHCGYFATTKKLMRKVPGRLVGQT QDDEGNRGFVLTLQAREQHIRRDKATSNICSNQALNALASSIAMSALGKQGIYEIAVQNL INANYAKNKFEEHGFEVLKAQSFNEFVVKFNQPIKNINLKLAEYGYIGGFDLGEVSDDFK NHMLVAVTELRSKDEIDDFVMKAGELND >gi|224999885|gb|ACJC01000115.1| GENE 3 3117 - 4208 1089 363 aa, chain - ## HITS:1 COG:SA1367 KEGG:ns NR:ns ## COG: SA1367 COG0404 # Protein_GI_number: 15927117 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Staphylococcus aureus N315 # 1 363 1 363 363 568 76.0 1e-162 MTTDLKKTPLYQNYVDSGAKIVEFGGWAMPVQFSSIKEEHNAVRYNVGLFDVSHMGEIEI SGKDAEQFIQYILSNDTNLLTNDKAMYSALCNEEGGVIDDLVTYKLNENHYLLIVNAANT NKDYQWIKKHSSNFTVDVSNTSDKYGQLAIQGPRSRALINELVDVDVNHMAMFEFKQNVQ LFGKSIILSQSGYTGEDGFEIYCKQEDTKDIWEQLLKYDVTPCGLGARDTLRLEAGLPLH GQDLSESITPYEGGIAFAAKPLIANDFIGKSVLKAQKENGSERRTVGLELLGKGIARTGY EVLDENSNQIGFVTSGTQSPSSGKSIALAIIDRGAFEMGKKVIVQIRKRQVEAKIVKKNQ IEK >gi|224999885|gb|ACJC01000115.1| GENE 4 4426 - 4938 250 170 aa, chain - ## HITS:1 COG:SA1368 KEGG:ns NR:ns ## COG: SA1368 COG0703 # Protein_GI_number: 15927118 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Staphylococcus aureus N315 # 1 159 1 160 174 179 55.0 2e-45 MKSIQVPIILVGFMGTGKTTVGKYLSDLYNLSYVDLDNFIEVNECKSIPDIFNDIGEKGF RSLETKYLKACLNTFDIISTGGGIIEDTNSLKLLKSQKHVVWLDCDIEIIFKRVKNDPHR PNAKSKNLNQLDALYSSRLSRYNEIAFMKVDSAQSVSEICTLIKTKLLSD >gi|224999885|gb|ACJC01000115.1| GENE 5 4940 - 5140 69 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRTINTKKSFFYSQKAFISLYLIVIFSIYLSIISFYISQYSLKLKTIHNLDVYYNKVIVN KLKEVD >gi|224999885|gb|ACJC01000115.1| GENE 6 5103 - 5594 384 163 aa, chain - ## HITS:1 COG:SA1369 KEGG:ns NR:ns ## COG: SA1369 COG4940 # Protein_GI_number: 15927119 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGF # Organism: Staphylococcus aureus N315 # 13 149 15 151 165 70 36.0 1e-12 MKYNYSIIKYVGRIKHLIREPVFLFNIKAFTYIEALFALFVTTLILALLPTILKLTSFYL NTAQNNEDIQFEFFRRDLLKEKMTTKNNYEIENAYTIKLKKNKDVIRYIYKNRKIYKNIN QRGNITLLNHVLSTRILKTNDNIVKLLITTGDANDKHKEILFL >gi|224999885|gb|ACJC01000115.1| GENE 7 5518 - 5736 105 72 aa, chain - ## HITS:1 COG:no KEGG:SERP1105 NR:ns ## KEGG: SERP1105 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 72 26 97 97 117 97.0 2e-25 MILIPMFSNLNNQYLINLNNIKIKQIMITSLQHYKKKELYQGVVIENYEIQLFNHKICGA DKAFNTRTCISI >gi|224999885|gb|ACJC01000115.1| GENE 8 5798 - 6247 159 149 aa, chain - ## HITS:1 COG:SA1371 KEGG:ns NR:ns ## COG: SA1371 COG2165 # Protein_GI_number: 15927121 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Staphylococcus aureus N315 # 5 149 1 144 144 110 42.0 1e-24 MERQLPIKNIKAFSLVEMIFTLFIISCLLITTLWSRNLFDIQLIDEEHEIKQLITKFNYY KSKAISNNESITLLFFNNSNRVQVVEENGDKYSFKLNKGKVTNIAKIQTLNFDKNGNINH FGSLILQYNSHAYRLIFHIEKGRLRFVKI >gi|224999885|gb|ACJC01000115.1| GENE 9 6225 - 6542 338 105 aa, chain - ## HITS:1 COG:SA1372 KEGG:ns NR:ns ## COG: SA1372 COG4537 # Protein_GI_number: 15927122 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Staphylococcus aureus N315 # 4 105 2 103 103 138 86.0 2e-33 MKTLKLLKQTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIE AYALKHNRNPSNIDDLVSDGFIKEGQKTCKSGQTISIANGEAVAN >gi|224999885|gb|ACJC01000115.1| GENE 10 6560 - 7399 274 279 aa, chain - ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 1 279 78 356 356 236 49.0 5e-62 MIGYPELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFIL TILNITVIPQFQQLYETMNVKLSTFQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYY LPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQIVQIYRNEQDNEFLKF LGNCLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEK VLKQTKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK >gi|224999885|gb|ACJC01000115.1| GENE 11 7599 - 8573 474 324 aa, chain - ## HITS:1 COG:SA1374 KEGG:ns NR:ns ## COG: SA1374 COG2804 # Protein_GI_number: 15927124 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Staphylococcus aureus N315 # 1 324 1 324 324 444 70.0 1e-125 MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDTLSFPIYKKLLIYMKFQ SGLDVSTQHRAQSGRYSYKMKRLYYLRISTLPLSLGNESCVIRIVPQYFQTKRESYEFKD FKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAHQNLNLNVISVEDPVEQILNGITQISV NEKAGINYESSFKAILRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL LRLLEMGISVQELCQAINLISNQRLITTTTNTRQLVSELMFQSQINYFFEHNHSLPKNFT KLSTHLNKMSKEGVICEEVVDKYI >gi|224999885|gb|ACJC01000115.1| GENE 12 8630 - 9253 745 207 aa, chain - ## HITS:1 COG:SA1375 KEGG:ns NR:ns ## COG: SA1375 COG0491 # Protein_GI_number: 15927125 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Staphylococcus aureus N315 # 1 207 1 207 207 325 78.0 5e-89 MRISNLTLGIVDTNTYFIENEENVILIDPSSESQKIIKKLNQINKPLKAILLTHAHYDHI GALDDIIEKYQVPVYMSKDEFDFLTDPDKNGSSKFTQYGLSKIESHANPLSLSEGPAEIE GFKFKVLHTPGHSPGSLSFVFNDFAVVGDTLFKNGIGRTDLYKGDYETLIDSIKDKLFEL EGDMPLFPGHGPYTTVDDEQLNPFING >gi|224999885|gb|ACJC01000115.1| GENE 13 9253 - 9579 440 108 aa, chain - ## HITS:1 COG:SA1376 KEGG:ns NR:ns ## COG: SA1376 COG0011 # Protein_GI_number: 15927126 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 107 1 107 109 172 84.0 1e-43 MAIVDVVVIPVGTEGPSVSKYIAEIQTKLNEFKQQGKIDYQLTPMNTLIEGDLKDLFEVI QAIHELPFDKGLDRVCTNIRIDDRRDKSRKMNDKLKSVQKHLDHSGEL >gi|224999885|gb|ACJC01000115.1| GENE 14 9579 - 10565 650 328 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 317 1 317 319 254 40 4e-67 MTDIILAADIGGTTCKLGIFDKDLEQLHKWSIDTDTSDHTGELLLKNIYDSFTEKVAEFK YDFNNVVGVGIGVPGPVDFDTGVVYGAVNLHWPGSVNVREIFKQYVNCPVYVDNDANVAA LGEKHKGAGEGADDVVAITLGTGLGGGIISNGEIVHGHNGSGAEIGHLRADFDQRFQCNC GKSGCIETVASATGVVNLVNFYYPKLTFKSSILQLIKDNQVTAKAVFDAAKAGDQFCIFI TEKVANYIGYLCSIISVTSNPKYIVLGGGMSTAGLILIENIKTEYRNLTFTPAQNNTEIV QAKLGNDAGITGAAGLIKTYIIDKEGAK >gi|224999885|gb|ACJC01000115.1| GENE 15 10565 - 10765 153 66 aa, chain - ## HITS:1 COG:SA1378 KEGG:ns NR:ns ## COG: SA1378 COG4483 # Protein_GI_number: 15927128 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 66 1 66 67 84 75.0 6e-17 MTRKIKNFYDVLQLLKTYGFIIYFKNPDDMYEMMIQEIKSLYSYQLLTKDEYLNCILIIN QRRNEK >gi|224999885|gb|ACJC01000115.1| GENE 16 10749 - 12209 1190 486 aa, chain - ## HITS:1 COG:SA1379_1 KEGG:ns NR:ns ## COG: SA1379_1 COG0705 # Protein_GI_number: 15927129 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Staphylococcus aureus N315 # 1 319 1 319 319 437 67.0 1e-122 MNINKLYWKALYYWIRYLNYNVIYRDKGDDEIWLSHKRKQSIVVFRKNVTSTQEIRFDKS KIMERPEEIQQFIGYLPESYEFYYFTDKELSKENLNEEKPTKLKFKILSNEQSLKSLPIN FLLIKMLINNEDKKTYLYYKRKVLTQNLVDKHMQRFTPITYTLILINIVIWLCMILYLNR FSDVKLLEVGGLVHFNVVHGEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWR MLIIYIISGLYGNFVSLSFNTSTISVGASGAIFGLIGSIFVIMYLSKNFNKKMIGQLLIA LVVLIGFSLFMSNINIMAHLGGFISGVLITLIGYYFKAHRSLFWAFLIVFLLIFIILQIR IFTISEDNIYDKLIRDEMIKGNYSEAKHVVKQTLNNNYADDETYYLSGLITATKSSQAEA VSEWERGLRKFPNSGVLNYELAIANRSLSDDKKALKYIKKAVAINPNNKKYVNLKKELSK SNDAKN >gi|224999885|gb|ACJC01000115.1| GENE 17 12210 - 12761 546 183 aa, chain - ## HITS:1 COG:SA1380 KEGG:ns NR:ns ## COG: SA1380 COG0212 # Protein_GI_number: 15927130 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Staphylococcus aureus N315 # 1 178 1 178 179 158 51.0 7e-39 MDKKGLRRNIIKKMKSYDKVQKHLADEWLAKKLYQSEAYRKANKIGIVLSMPHEVNTYPI ITYSLHNNKKIFVPETNYQQQEMTFKQLLSIEDIEKDGKGIYHSISPVGTTNKMDLIVVP GVAFDKLGYRIGYGGGYYDRFLSQHRSNTVSLLYDFQLAQFNIEPHDQPVEQLIIYHNKV VEE >gi|224999885|gb|ACJC01000115.1| GENE 18 12942 - 13091 269 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27468155|ref|NP_764792.1| 50S ribosomal protein L33 [Staphylococcus epidermidis ATCC 12228] # 1 49 1 49 49 108 100 5e-23 MRVNVTLACTECGDRNYISTKNKRNNPERVEMKKYCSRDNKHTLHRETK >gi|224999885|gb|ACJC01000115.1| GENE 19 13196 - 15232 2142 678 aa, chain - ## HITS:1 COG:SA1381 KEGG:ns NR:ns ## COG: SA1381 COG0768 # Protein_GI_number: 15927132 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Staphylococcus aureus N315 # 1 661 18 678 691 1091 84.0 0 MNKRINFIFGFIVFIFAIVVLRLGYLQIAQGSHYKQLIKNDENITVNESVPRGRILDRNG KVLVDNASKMSITYTRNRKTSQKEMLNTAKKLTDLIKMDTDKITERDKKDFWIQMYPSSA KKLMRKEQLMLEDGSISQEQFDTQLRDKIGKKQLKQLTKKDLQVLAIYREMNAGSTLDPQ TIKNEDVSEKEYAAVSQQLSKLPGVNTTMDWDRKYPYGDTLRGIFGDVSTSTEGIPKELT EQYLSKGYSRNDRVGKSYLEYQYEDVLKGTKKQMKYTTDKSGRVISSEVLNPGSRGHDLQ LTIDIDLQKKVESLLEKQISKLRSQGAKDMDNALMVVQNPRNGDILAMAGKQIDKQGKLK DYDIGNFTAQYTVGSSVKGGTLLAGYQNKAINVGETMVDEPLKFQGGLTKRSYFNKNGHV SIDDKQALMHSSNVYMFKTALKLAGDPYTSGMSLPNNISDAGRKLRKGLNQVGLGLKTGI DLPNETPGQIEPLTNNPGNYLDLAIGQYDTYTPLQLSQYVSTIANDGYRIQPHIGLSIYE STNKDETGPLKRKIKGNVLNKVNNSSDEIKEVQEGFKMAFNEKQGTGYASFRNTVVPSAG KTGTAEVFQDGEPRVNSTYIGYAPVDNPKLSFSIVYTNQPVPPPWLNGGDLGRDVINYYF KDKDNKDDSRSNNEEKED >gi|224999885|gb|ACJC01000115.1| GENE 20 15684 - 16283 639 199 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 199 1 201 201 250 57 7e-66 MAFELPNLPYAYDALEPHIDKQTMEIHHDKHHNTYVTKLNSAVEGTDLEAKSIEEIVANL DSVPSNIQTAVRNNGGGHLNHSLFWELLSPNSEEKGEVVDKIKEQWGSLDEFKKEFADKA AARFGSGWAWLVVNNGQLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIN AFWNVVNWEKVNELYNATK >gi|224999885|gb|ACJC01000115.1| GENE 21 16687 - 17106 453 139 aa, chain - ## HITS:1 COG:SA1383 KEGG:ns NR:ns ## COG: SA1383 COG0735 # Protein_GI_number: 15927134 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 135 1 135 136 229 85.0 9e-61 MNTNDAIKVLKENGLKYTDKRKDMLDIFVKEDKYLNAKHIQQQMDKDYPGISFDTVYRNL HLFKDLGIIESTELDGEMKFRIACTNHHHHHFICENCGETKVIDFCPIEKIKSQLPNVNI HTHKLEVYGICEECQRKAN >gi|224999885|gb|ACJC01000115.1| GENE 22 17109 - 17957 664 282 aa, chain - ## HITS:1 COG:SA1384 KEGG:ns NR:ns ## COG: SA1384 COG1108 # Protein_GI_number: 15927135 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 280 1 280 287 321 87.0 1e-87 MIDALLNFDFIRYSLISGLLIGFIAPLIGAFIVVRRLSLIADALSHVTLGGISFGMFLLT IIPVFSVINPMWFGILFAVIGALLIEKLRTSFSNYQEIAIPIIMSAGIALSAIFISLADG FNQEIVGLLFGSISAVNISDLTTIIIITIIVLIFIVLFYKELFILSFDEEYSKVIGIPKW IQFLFIVIVAMVISASMRVVGILLVSALITLPIAISMRITKGFKQLIALSIILGELSVIL GLIIAFYMNISPGGVIVVLLVVMLILTMTIKKLKIKFKKGVV >gi|224999885|gb|ACJC01000115.1| GENE 23 17991 - 18773 266 260 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 216 7 218 318 107 30 1e-22 MTTPVFELRNLDYYFDNKHVLENINIKINKGEFLAIVGPNGAGKSTLLKVILGLLPIQKG EIIVEGKPFKGNKSSLKISYVSQKASAFNAGFPASVKEVVLSGLTKTKKIFQRFNKSDYQ KVKKVLERLNISHLINKNIAELSGGQQQRVLIARALISNPSVLVLDEPTNGIDAKHVSEF YDTLDKLKKQGITIILVTHDIGVVADTATEVACLNKHLHFHGSTEAFKSLDEVEISKIYG HPIQFVDHQHNRTCCNEGNE >gi|224999885|gb|ACJC01000115.1| GENE 24 18991 - 19881 1004 296 aa, chain - ## HITS:1 COG:SA1386 KEGG:ns NR:ns ## COG: SA1386 COG0648 # Protein_GI_number: 15927137 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Staphylococcus aureus N315 # 1 296 1 296 296 511 86.0 1e-145 MLLGSHVSMSGKKMLQGSAEEAHKYGESTFMIYTGAPQNTRRKNIEDLNIEKGQQAMKTY GLSNIVVHAPYIINIANTTKPEVFNLGVDFLQKEIERTQALGAKDIVLHPGAHVGAGVDK GIQKIIEGLNEVLTHDNDVRIALETMAGKGTEVGRSFEEIAQIIDGVTHNDRLSVCFDTC HTHDAGYNVKEDFDGVLEKFDNIIGVDRIKVVHVNDSKNLRGAQKDRHENIGFGHIGFDA LNYVVHHDTFKNIPKILETPYVGEDKKNKKPPYKLEIDMLKSQEFDPDLKNKILNQ >gi|224999885|gb|ACJC01000115.1| GENE 25 19891 - 21237 1269 448 aa, chain - ## HITS:1 COG:SA1387 KEGG:ns NR:ns ## COG: SA1387 COG0513 # Protein_GI_number: 15927138 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 1 447 1 446 448 716 81.0 0 MSKHPFEHFNLDENLIEAVKNLNFEKPTEIQNRIIPRILKGTNLIGQSQTGTGKSHAFLL PLIQLIESDIQEPQAIVVAPTRELAQQLYQVAMHLVKFKKGINVKLFIGGTDLEKDKQRC NHQPQLIIGTPTRINDLAHSGYLHAHLASYLIIDEADLMIDLGLIEDVDHIAARLDNENA HLAVFSATIPKSLQPFLNKYLSQPEFVVVDGKAHNKENIEFYLIPTKGSAKVDKTLELID ILNPYLCIIFCNSRENADELADTLNKEGIKIGMIHGGLTPRERKQQMKRIRNLDFQFVIA SDLASRGIDIEGVSHVINFDVPNDIDFFTHRVGRTGRGNYKGVAITLYGPDEESNITLIE DKGYKFKNVDIKNGELKPIKAHNMRKSRQRKDDHLTNEVKHKVRSKSKRKVKPGYKKKFK QEVEKLKRQERKQYSKKQKRQKRKTNKG >gi|224999885|gb|ACJC01000115.1| GENE 26 21272 - 22372 1108 366 aa, chain - ## HITS:1 COG:SA1388_1 KEGG:ns NR:ns ## COG: SA1388_1 COG0327 # Protein_GI_number: 15927139 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 174 64.0 2e-43 MKISELMKILNNHVPFHQAESWDNVGLLIGNDNLDITGILTTLDCTDDVVNQAIELNTNT IIAHHPLIFKGVKRIVEDGYGSIIRKLIQNNINLIALHTNLDVHPEGVNRMLAHQLGLEN ISMINTNSSYYYKVQTFIPKNYVEDFKDSLNELGLAKEGNYEYCFFESEGKGQFKPVGDA NPYIGKLDSIEYVDEIKLEFMIKSNELEIAKRAILDNHPYETPVFDFIKMNKESEYGLGI IGQLNKTMTLDEFSEYAKKQLSIPSVRYTGQHDSPIKKVAIIGGSGIGFEYKASQLGADV FVTGDIKHHDALDAKIQNVNLLDINHYSEYVMKEGLKELLAKWLFKYENQFPIYASEINT DPFKYK >gi|224999885|gb|ACJC01000115.1| GENE 27 22362 - 23051 609 229 aa, chain - ## HITS:1 COG:SA1389 KEGG:ns NR:ns ## COG: SA1389 COG2384 # Protein_GI_number: 15927140 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Staphylococcus aureus N315 # 1 225 1 225 225 270 66.0 1e-72 MINLNQRLSIVCSFIKRGTLADIGSDHAYLPIYAIQNNLCTKAIAGEVIQGPYKAAKRNI ANYELNQLVDVRLGDGLSVINAEDQIDNITVCGMGGPLIAKILNDGKDKLVNHPRLILQS NIQTQALRQTLNKLSYEIVDERIIEEKGHIYEIVVAEFNNNLVKLNILQEKFGPFLLRDC NNIFQKKWKRELQALRDIKSQLNSTSHHERLKEIEDEINLIQEVLINEN >gi|224999885|gb|ACJC01000115.1| GENE 28 23206 - 24312 1525 368 aa, chain - ## HITS:1 COG:SA1390 KEGG:ns NR:ns ## COG: SA1390 COG0568 # Protein_GI_number: 15927141 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Staphylococcus aureus N315 # 1 368 1 368 368 629 96.0 1e-180 MSDNQVKIKKQTIDPTLTLEDVKKQLIDKGKKEGHLSHEEIAEKLQNFEMDSDQMDDFFD QLNDNDITLVNEKDSSDTDDKINPNDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIEL AKKIEQGDEIAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKG FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIG EEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQL EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS KRLKDFMD >gi|224999885|gb|ACJC01000115.1| GENE 29 24583 - 26379 1413 598 aa, chain - ## HITS:1 COG:SA1391 KEGG:ns NR:ns ## COG: SA1391 COG0358 # Protein_GI_number: 15927142 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Staphylococcus aureus N315 # 1 598 1 605 605 813 69.0 0 MRIDQSVIDEIKNKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF GCKKGGNVFQFTQEIKDVSFVEAVKDLGERVNIQVDIGQNQTNSSTKIASDELKMIEMHE LIKDYYHYALMKTVEGEEALNYLHERGFTDDLIKEREIGYAPDNSHFCHDFLEKKGYDIE LAFEAGLLSRNEENFTYFDRFRNRIMFPLKNGQGRIVGYSGRTYTNQEPKYLNSPETPIF QKRRILYNLNKARKFIRKQDEIILLEGFMDVIKSDYAGLKQVVASMGTQLSQEHITFLQK LTQNVTLMFDGDYAGKEATIKTGQALLNQGLNVFVVQLPSGMDPDDYIRKYDNEQFIKFV QQDKQSFVLFKVKMYQNEINHNDLAYEKHFKETVRDLSLVNSSIIRNKLIQNIADIFKVS PETIQYELDATYQHQMPSNTYPTFQDEPSKQQLILGRLTKNEKAERALIKHLMKDKDTFL NYYQKVVPEDFTNSYLKRIFSYLYDYYSKNDYYTISDMMQYIESNELREVLIELDQYHLN DEPYENEIEDYIQIIKNNNNEDSLESLNYKLREASRIGDSELQKYYLQLIVNKNKNRM >gi|224999885|gb|ACJC01000115.1| GENE 30 26553 - 27371 750 272 aa, chain - ## HITS:1 COG:SA1392 KEGG:ns NR:ns ## COG: SA1392 COG1806 # Protein_GI_number: 15927143 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 272 1 272 272 450 87.0 1e-126 MDNIKIIVASDSIGETAELVARAGVSQFNPKQCKHEFLRYPYIESFENVDEVIQVAKDTN AIIVYTLIKPEIKKYMISKVNEHALKSVDIMGPLMELLSNSIEETPYYEPGMVHRLDDAY FKKIDAIEFAVKYDDGKDPKGLPKADIVLLGISRTSKTPLSQYLAHKSYKVMNIPIVPEV TPPDGLFNVDPSKCIALKISEEKLNRIRKERLKQLGLGDKARYATEARIQEELDYFEKLV DKIGCPVIDVSDKAIEETANDIIHFIKKNKSK >gi|224999885|gb|ACJC01000115.1| GENE 31 27383 - 27874 420 163 aa, chain - ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 163 45 207 207 263 80.0 2e-70 MSGFIEARPRVGYFYSGKSKNKIINEKLRKYVVKDYMSHPVVIKENMTVYDAICTIFLED VSTLFITNENNDFVGVCSRKDLLRASMIGEDIHTMPISVNMTRMPNVSYLKEQELVIYAA NQMIDKEIDSLPIVRPKENDKFEVIGRISKTTITKLFVSLFKE >gi|224999885|gb|ACJC01000115.1| GENE 32 28342 - 29733 1613 463 aa, chain + ## HITS:1 COG:SA1394 KEGG:ns NR:ns ## COG: SA1394 COG0423 # Protein_GI_number: 15927145 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Staphylococcus aureus N315 # 1 463 1 463 463 898 93.0 0 MVKNMDTIVQLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNIKKAWWQKFITQSPYN VGIDAAILMNPKTWEASGHLGNFNDPMIDNKDSKIRYRADKLIEDYMQNEKGDENFIADG LSFDEMKKIIDDEGIVCPVSKTANWTDIRQFNLMFKTFQGVTEDSTNELFLRPETAQGIF VNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEFFCKPGEEIEWQN YWKTFASEWLTDLNISEDNMRLRDHDEDELSHYSNATTDIEYKFPFGWGELWGIASRTDF DLRQHSEHSGEDFKYHDPETNEKYIPYCIEPSLGADRVTLAFLCDAYAEEGVEGSKDART VMHFHPALAPYKAAVLPLSKKLSSEAIKIFEQLSSSFAIDFDESQSIGKRYRRQDEIGTP YCITFDFDSLEDNQVTVRDRDSMEQVRMPISELETFLADKVKF >gi|224999885|gb|ACJC01000115.1| GENE 33 29843 - 30604 600 253 aa, chain - ## HITS:1 COG:SA1395 KEGG:ns NR:ns ## COG: SA1395 COG1381 # Protein_GI_number: 15927146 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 250 1 250 250 357 72.0 1e-98 MLMKQKGIIIKSVDYGESDKIITILNEYGAKIPLMARRAKKVKSGFQANTQLFVYGLFIY NKWRGMGTLNSVDVINQHYELQLDLFESSYASLCAETIDRSMEENEVSKYNYDLLQFVLS KINEGTPAQLMSVIVLLKSMSKFGFTASFDHCAITGIQDQSKLIAYSFKYDGAISESALY QDQHAFQLSNRTLYLLNILQQLPISKINHLNIQQDILNEMSELLIMLYREYAGMFFKSQK LINQLNRLEKDSL >gi|224999885|gb|ACJC01000115.1| GENE 34 30630 - 30905 315 91 aa, chain - ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 1 91 209 299 299 167 96.0 3e-42 HAIGVNVDRMIKEDEDRVRIEATIYVERDSQKGIVIGKGGKKLKEVGKRARRDIEMLLGS KVYLELWVKVQRDWRNKVNFIRQIGYVEDQD Prediction of potential genes in microbial genomes Time: Sun May 29 07:47:04 2011 Seq name: gi|224999884|gb|ACJC01000116.1| Staphylococcus epidermidis W23144 contig00156, whole genome shotgun sequence Length of sequence - 2548 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 1, operones - 1 average op.length - 5.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 6/0.000 - CDS 2 - 623 605 ## COG1159 GTPase 2 1 Op 2 3/0.000 - CDS 623 - 1027 477 ## COG0295 Cytidine deaminase 3 1 Op 3 11/0.000 - CDS 1027 - 1383 347 ## COG0818 Diacylglycerol kinase 4 1 Op 4 17/0.000 - CDS 1385 - 1852 657 ## COG0319 Predicted metal-dependent hydrolase 5 1 Op 5 . - CDS 1853 - 2548 736 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase Predicted protein(s) >gi|224999884|gb|ACJC01000116.1| GENE 1 2 - 623 605 207 aa, chain - ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 1 207 1 207 299 382 93.0 1e-106 MTEHKSGFVSIIGRPNVGKSTFVNRVIGHKIAIMSDKAQTTRNKIQGVMTRDDAQIIFID TPGIHKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPIFLV LNKIDLVHPDTLMPKIEQYQSYMDFTDIIPISALEGMNVDHFIDVLKSFLPEGPKYYPDN QISDHPEQFVVSEIIREKILHLTSEEI >gi|224999884|gb|ACJC01000116.1| GENE 2 623 - 1027 477 134 aa, chain - ## HITS:1 COG:SA1397 KEGG:ns NR:ns ## COG: SA1397 COG0295 # Protein_GI_number: 15927148 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Staphylococcus aureus N315 # 1 133 1 133 134 221 78.0 2e-58 MSYQSHYFKEVREAQKNAYAPYSNFKVGAYLRTKDGRCFHGANVENAAYPMGICAERSSL VSAISEGYQPGDFESITVTVDADKPSSPCGECRQVMMELCDKDMPVYMTNQNGDMIEATV GELLPLGFSGKDLN >gi|224999884|gb|ACJC01000116.1| GENE 3 1027 - 1383 347 118 aa, chain - ## HITS:1 COG:SA1398 KEGG:ns NR:ns ## COG: SA1398 COG0818 # Protein_GI_number: 15927149 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Staphylococcus aureus N315 # 1 114 1 114 114 107 58.0 7e-24 MKRFKYAYEGFRAILKKDQNFLFHILAAVIVIILGIVLNIDRIDWILIIVAIGLVLSFEA INTSIEFVVDLITTDYHEYAKYAKDIAAFSVVIVSIVSICIGLIVFIPYILEIFKGGM >gi|224999884|gb|ACJC01000116.1| GENE 4 1385 - 1852 657 155 aa, chain - ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 1 155 1 155 155 233 80.0 1e-61 MFTIDFSDHTGLVESSWFDQIDQLLTFAKKKENIHNDAELSVTLVDKEEIQNINKVYRDK DKVTDVISFALEEDEPEIDFNDFDIPRVLGDIIICTDVAKEQAESYGHSFERELGFLALH GFLHLLGYDHMNDNDEKEMFGRQDAILNEFGLTRN >gi|224999884|gb|ACJC01000116.1| GENE 5 1853 - 2548 736 231 aa, chain - ## HITS:1 COG:SA1400 KEGG:ns NR:ns ## COG: SA1400 COG1702 # Protein_GI_number: 15927151 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Staphylococcus aureus N315 # 2 229 86 313 315 412 91.0 1e-115 DNNTIHHLLDLYDEEITKDAYGKTIRAKTMGQRIYINAMKRNDLVFGIGPAGTGKTFLAV VYAAKQLRKGSVKRIVLTRPAVEAGESLGFLPGDLKEKVDPYLRPLYDGLNTVLGREQTQ RLIERGVIEIAPLAYMRGRTLDDAFVILDEAQNTTHAQMKMFLTRLGFGSKMVVTGDQTQ IDLPKGVKSGLKEAVKKLSGVSGISIMKMDQSDVVRHPLVSKIINRYEGVE Prediction of potential genes in microbial genomes Time: Sun May 29 07:47:10 2011 Seq name: gi|224999883|gb|ACJC01000117.1| Staphylococcus epidermidis W23144 contig00157, whole genome shotgun sequence Length of sequence - 15666 bp Number of predicted genes - 15, with homology - 15 Number of transcription units - 6, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 252 374 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase - Prom 419 - 478 7.7 - Term 450 - 496 11.1 2 2 Op 1 . - CDS 543 - 1226 763 ## SERP1139 hypothetical protein 3 2 Op 2 3/0.000 - CDS 1242 - 2231 1434 ## COG4864 Uncharacterized protein conserved in bacteria 4 2 Op 3 1/1.000 - CDS 2246 - 2956 625 ## COG1030 Membrane-bound serine protease (ClpP class) - Prom 3017 - 3076 9.1 - Term 3750 - 3800 -0.5 5 3 Tu 1 1/1.000 - CDS 3802 - 3978 282 ## PROTEIN SUPPORTED gi|15924565|ref|NP_372099.1| 30S ribosomal protein S21 - Prom 4041 - 4100 10.0 6 4 Op 1 5/0.000 - CDS 4104 - 5450 1766 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 7 4 Op 2 9/0.000 - CDS 5456 - 6193 637 ## COG1385 Uncharacterized protein conserved in bacteria 8 4 Op 3 5/0.000 - CDS 6210 - 7148 1645 ## PROTEIN SUPPORTED gi|242242853|ref|ZP_04797298.1| ribosomal protein L11 methyltransferase 9 4 Op 4 31/0.000 - CDS 7152 - 8273 1146 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain - Prom 8299 - 8358 5.9 - Term 8331 - 8371 8.6 10 5 Op 1 29/0.000 - CDS 8418 - 10247 2609 ## COG0443 Molecular chaperone 11 5 Op 2 21/0.000 - CDS 10303 - 10935 854 ## COG0576 Molecular chaperone GrpE (heat shock protein) 12 5 Op 3 5/0.000 - CDS 10964 - 11941 676 ## COG1420 Transcriptional regulator of heat shock gene - Prom 11978 - 12037 8.2 13 5 Op 4 4/0.000 - CDS 12041 - 13006 891 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases - Prom 13200 - 13259 9.1 - Term 13228 - 13272 6.2 14 5 Op 5 . - CDS 13283 - 15202 1917 ## COG0481 Membrane GTPase LepA - Prom 15222 - 15281 7.2 + Prom 15169 - 15228 10.2 15 6 Tu 1 . + CDS 15399 - 15650 399 ## PROTEIN SUPPORTED gi|27468190|ref|NP_764827.1| 30S ribosomal protein S20 Predicted protein(s) >gi|224999883|gb|ACJC01000117.1| GENE 1 3 - 252 374 83 aa, chain - ## HITS:1 COG:SA1400 KEGG:ns NR:ns ## COG: SA1400 COG1702 # Protein_GI_number: 15927151 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Staphylococcus aureus N315 # 1 83 1 83 315 126 83.0 1e-29 MPGIIQIDDINQSQALIGNNDENLKAIEAHFNVVIHARGQEIAVKGEKLEHVEKAELVLK NLLKVIELGNTITLKDVEAAIKM >gi|224999883|gb|ACJC01000117.1| GENE 2 543 - 1226 763 227 aa, chain - ## HITS:1 COG:no KEGG:SERP1139 NR:ns ## KEGG: SERP1139 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 15 227 15 227 227 267 94.0 2e-70 MNIGIIIFIISVIITGVSALRDKSHEDRQNQRPNQKPSNEQPQEGGFFEKLEKTFKEISD ELNDEPEKKQSKPYETSLPPLNKDWNEKEKKKTSHPKEKQNTSQSKRQTTSTHEHQNIPQ PDKTTSRNDNYEKLKQELEQDVTKNLIDVRREIDKEKEKQLVMIERKAQDIINDKYLSER TKRYRLKQLLNSRNVEKNMSHSAFQYDSDEVINGIIWSEILSKPKQL >gi|224999883|gb|ACJC01000117.1| GENE 3 1242 - 2231 1434 329 aa, chain - ## HITS:1 COG:SA1402 KEGG:ns NR:ns ## COG: SA1402 COG4864 # Protein_GI_number: 15927153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 329 1 329 329 536 95.0 1e-152 MFSIGFIIIAVIIVVALLILFSFVPVGLWISALAAGVHVGIGTLVGMRLRRVSPRKVIAP LIKAHKAGLNLTTNQLESHYLAGGNVDRVVDANIAAQRADIDLPFERGAAIDLAGRDVLE AVQMSVNPKVIETPFIAGVAMNGIEVKAKARITVRANIARLVGGAGEETIIARVGEGIVS TIGSSEHHTEVLENPDNISKTVLSKGLDSGTAFEILSIDIADVDISKNIGADLQTEQALA DKNIAQAKAEERRAMAVASEQEMKARVQEMRAKVVEAESEVPLAMAEALRSGNIGVKDYY NLKNIEADTGMRNAINKRTDQNDDESPQQ >gi|224999883|gb|ACJC01000117.1| GENE 4 2246 - 2956 625 236 aa, chain - ## HITS:1 COG:SA1403 KEGG:ns NR:ns ## COG: SA1403 COG1030 # Protein_GI_number: 15927154 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane-bound serine protease (ClpP class) # Organism: Staphylococcus aureus N315 # 5 235 5 235 235 270 70.0 2e-72 MDNLHLIHMLFMAKPLNGMNWVENLAQFITQPFVSLIFTCIIFIGFLYQLYSKRINLMGI IALLALLLLFLAFLINGDVNVMSVLLFTIGLILLIIELFVIGAVIGMIGIILITLSIIIL GDNILLMLGNVIVALILSIVEWVILVKIFNRKIPFLDKVILKDSTNSEAGYRSHDDRSHL VGKTAHTVTDLRPAGIITCENDRIDAVSDGSFILRNRQVKILEVEGTRVVVREIEK >gi|224999883|gb|ACJC01000117.1| GENE 5 3802 - 3978 282 58 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15924565|ref|NP_372099.1| 30S ribosomal protein S21 [Staphylococcus aureus subsp. aureus Mu50] # 1 58 1 58 58 113 100 9e-25 MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVKRKKKSEAARKRKFK >gi|224999883|gb|ACJC01000117.1| GENE 6 4104 - 5450 1766 448 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 1 436 1 440 451 684 75 0.0 MSTVAFHTLGCKVNHYETEAIWQLFKDANYERVEFETNADVFVINTCTVTNTGDKKSRQI IRRAIRQNPDAVVCVTGCYAQTSSAEIMEIPGVDIVVGTQDRHKLLDYIQQFQEERQPIN GVGNIMKNRTYEELEVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQ ATQLVNSGYKEIVLTGIHTGGYGQDLKNYNLAQLLRDLDTIEGLERIRISSIEASQLTDE VIDVIGNSNKVVRHLHIPLQSGSDDVLKRMRRKYTMAHFSERLTKLHQALPDLAVTSDVI VGFPGESEEEFQETYDFIVNHHFSELHVFPYSPRIGTPAARMDNQIDEETKNVRVHKLIS LSNQLAKEYASKFEDEVLEVIPEEMGEEPHTLVGYADNYMKVRFEGDDSLIGQIVKVKIV KANYPINEGKAIRVVKHATNQSEKEVLV >gi|224999883|gb|ACJC01000117.1| GENE 7 5456 - 6193 637 245 aa, chain - ## HITS:1 COG:SA1406 KEGG:ns NR:ns ## COG: SA1406 COG1385 # Protein_GI_number: 15927157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 245 6 250 250 333 69.0 1e-91 MNQSADENQCFFIDNKEDYHHIVNVMRYKEGQNIIVTFSDENVFRCKIISINDQSIEIKL EEKQQINTELPQNITICSGLIKADKYEWMIQKATEMGANEFIAVAMERSVVKLNVSKVEK KLSRWQKIIKEAAEQSYRLTIPNIKFKSNLKEIYGMISQYDYVLIAYEEQAKHGELSQFK QTIKQFKTQDRVLIIFGPEGGLSDSEIALFGDVSTLVGLGPRILRAETAPLYALSAVSYE KELLG >gi|224999883|gb|ACJC01000117.1| GENE 8 6210 - 7148 1645 312 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|242242853|ref|ZP_04797298.1| ribosomal protein L11 methyltransferase [Staphylococcus epidermidis W23144] # 1 312 1 312 312 638 100 0.0 MNWMELSIVVNHEVEYDVTEILESYGSNGVVIEDSHILEEQPVDKFGEIYDLNPEDYPEK GVRLKAYFNEFTYNENLKSNINHEILNLQQIDKTIYDYQEKLIAEVDWENEWKNYFHPFR ASKQFTIVPSWESYVKENDNELCIELDPGMAFGTGDHPTTSMCLKAIETFVKPTDSVIDV GTGSGILSIASHLLGVQRIKALDIDEMAVNVAKENFKKNHCDDAIEAVPGNLLKNENEKF NIVIANILAHIIEEMIEDTYNTLIEDGYFITSGIIEEKYQDIESQMKRIGFKIISVEHDN GWVCIVGQKVSG >gi|224999883|gb|ACJC01000117.1| GENE 9 7152 - 8273 1146 373 aa, chain - ## HITS:1 COG:SA1408 KEGG:ns NR:ns ## COG: SA1408 COG0484 # Protein_GI_number: 15927159 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Staphylococcus aureus N315 # 1 373 1 379 379 590 84.0 1e-168 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDEN KRANYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTM TITFEEAVFGTKKEISIKKDVTCHTCNGDGAKPGTSKKTCSYCNGAGRVSVEQNTILGRV RTEQVCPKCEGSGQEFEEPCPTCKGKGTENKTVKLEVTVPEGVDNEQQVRLAGEGSPGIN GGPHGDLYVVFRVKPSNTFERDGDDIYYNLDISFSQAALGDEIKIPTLKSNVVLTIPAGT QTGKQFRLKDKGVKNVHGYGYGDLFVNIKVVTPTKLNDRQKELLKEFAEINGEDINEQSS NFKDRAKRFFKGE >gi|224999883|gb|ACJC01000117.1| GENE 10 8418 - 10247 2609 609 aa, chain - ## HITS:1 COG:SA1409 KEGG:ns NR:ns ## COG: SA1409 COG0443 # Protein_GI_number: 15927160 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Staphylococcus aureus N315 # 1 608 1 610 610 932 90.0 0 MGKVIGIDLGTTNSCVSILEGDEPKVIQNPEGARTTPSVVAFKNGETQVGEVAKRQAITN PNTVQSIKRHMGTDYKVDIEGKSYTPQELSAMILQNLKSTAENYLGDTVDKAVITVPAYF NDGERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTETDQKVLVFDLGGGTFDVSILE LGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVSEFKKENGVDLSQDKMALQRLKDAAEKAK KDLSGVSQTQISLPFISAGENGPLHLEISLTRSKFEELADSLIKKTMEPTRQALKDAGLS TSEIDEVILVGGSTRIPAVQEAVKKEIGKEPHKGVNPDEVVAMGAAIQAGVITGDVKDVV LLDVTPLSLGIEIMGGRMNTLIERNTTIPTSKSQVYSTAADNQPAVDIHVLQGERPMASD NKTLGRFQLTDIPPAPRGVPQIEVTFDIDKNGIVNVTAKDLGTNKEQNITIQSSSSLSDE EIDRMVKDAEENAEADKKRREEVDLRNEADSLVFQVEKTVKDLGENISDEDKKNAEEKKD ALKTALEGEDIDDIKAKKEELEKVIQELSAKVYEQAQQAQQQAQEEQGSQDSTVEDADFK EVKDDEDKK >gi|224999883|gb|ACJC01000117.1| GENE 11 10303 - 10935 854 210 aa, chain - ## HITS:1 COG:SA1410 KEGG:ns NR:ns ## COG: SA1410 COG0576 # Protein_GI_number: 15927161 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Staphylococcus aureus N315 # 1 210 1 208 208 186 68.0 3e-47 MSEKDQSVNNTEKDINVETEDNQNDTKIENSVSNTDNSEANASDSENNSEESIKDEESES QDTKIKELEKLANDNEEKYLRLYAEFENYKRRIQKENQINATYKAQGVLTDILPSIDNIE RALQIEGDDESFKSLQKGVQMVHESLLRALKDNGLEEILAEGKEFDPNLHQAVVQDDNPD FKSGEVTQELQKGYKLKDRVLRPSMVKVNQ >gi|224999883|gb|ACJC01000117.1| GENE 12 10964 - 11941 676 325 aa, chain - ## HITS:1 COG:SA1411 KEGG:ns NR:ns ## COG: SA1411 COG1420 # Protein_GI_number: 15927162 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Staphylococcus aureus N315 # 1 325 1 325 325 406 71.0 1e-113 MITKRQLSILNAIVEDYVDFGQPIGSKTLIHRHHLDVSPATIRNEMKQLEEMHFIEKTHT SSGRVPSESGIRYYVNRLLEQTSHQSQNKIQRLNQLLIENHYDSSTALSNFAHELSMKSQ YATLVVRPNHKQDVINDIHLIRANNHLIILVMVFSSGHVENIHFVSHAQLNNINLNKIAN FLTEHFSFNRKVLTQNIESYFSQKEELLLANEVVEMINLQIGNQSNSIYMGGKVKLIDAL NESNVSSIQPILQYIESNKITELLEDISTSQITVRIGKEIDDSLSDISIVTSQYHFDESL KGQIAVIGPTAMHYQNVIQLLNRIW >gi|224999883|gb|ACJC01000117.1| GENE 13 12041 - 13006 891 321 aa, chain - ## HITS:1 COG:SA1412 KEGG:ns NR:ns ## COG: SA1412 COG0635 # Protein_GI_number: 15927163 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Staphylococcus aureus N315 # 1 320 54 373 374 474 73.0 1e-133 MYVGGGTPTALNMRQLEKLLKAINQTFTISGEFSFEANPDELTYEKVVLLKQYGVNRISM GVQTFKPELLKILGRTHKTEDIYNAVSHARKAGIESISLDLMYHLPQQTIDDFKDSLERA IALDIDHISSYGLILEPKTQFYNLYRKGHLKLPNEDLGAEMYQFLMDRMKNSSFHQYEIS NFSKLNHESNHNKVYWLNEEYYGFGAGASGYVNGVRYTNLNPVNHYIKAINEGKKPILSE TSPTYNERMEEEMFLGLRMNQGVSKSRFKKKFNKLIDEVFGETIKDLRCRGLIKEEREFI SLTERGKVIGNEVFEAFLLNS >gi|224999883|gb|ACJC01000117.1| GENE 14 13283 - 15202 1917 639 aa, chain - ## HITS:1 COG:SA1413 KEGG:ns NR:ns ## COG: SA1413 COG0481 # Protein_GI_number: 15927165 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Staphylococcus aureus N315 # 33 639 1 607 607 1119 94.0 0 MSKIYCIKVIKTLLYQRYIEVTGYKDESEKDKMDKQERYNRRENIRNFSIIAHIDHGKST LADRILENTKSVETREMQDQLLDSMDLERERGITIKLNAVRLKYEAKDGETYTFHLIDTP GHVDFTYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLELLPVVNKIDLPAAE PDRVKQELEDVIGIDQEDVVLASAKSNIGIEEILEKIVDVVPAPDGDPEAPLKALIFDSE YDPYRGVISSIRIIDGVVKAGDRIKMMATGKEFEVTEVGINTPKQLPIEELTVGDVGYII ASIKNVDDSRVGDTITLAERPADKPLQGYKKMNPMVYCGLFPIDNKDYNDLREALEKLQL NDASLEFEPESSQALGFGYRTGFLGMLHMEIIQERIEREFGIELIATAPSVIYQCILKDG SEVSVDNPAQMPERDKIEHIYEPFVKATMMVPNDYVGAVMELCQRKRGQFINMDYLDDIR VNIVYEIPLSEVVFDFFDQLKSNTKGYASFDYEFIENKESNLVKMDILLNGDKVDALSFI VHRDFAYERGKALVEKLKTLIPRQQFEVPVQAAIGQKIVARTNIKSMGKNVLSKCYGGDI SRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLAVLKMDDE >gi|224999883|gb|ACJC01000117.1| GENE 15 15399 - 15650 399 83 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468190|ref|NP_764827.1| 30S ribosomal protein S20 [Staphylococcus epidermidis ATCC 12228] # 1 83 1 83 83 158 100 3e-38 MPNIKSAIKRVRTTETAEERNISKKNAMRTAVKRAKTAISTDAENKDELLRFAIKQVDKA SQSNLIHSNKADRIKSKLMSANK Prediction of potential genes in microbial genomes Time: Sun May 29 07:47:15 2011 Seq name: gi|224999882|gb|ACJC01000118.1| Staphylococcus epidermidis W23144 contig00158, whole genome shotgun sequence Length of sequence - 1164 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.000 + CDS 2 - 283 233 ## COG3666 Transposase and inactivated derivatives + Prom 285 - 344 1.6 2 1 Op 2 2/0.000 + CDS 372 - 743 355 ## COG3666 Transposase and inactivated derivatives 3 1 Op 3 . + CDS 798 - 1164 116 ## COG3666 Transposase and inactivated derivatives Predicted protein(s) >gi|224999882|gb|ACJC01000118.1| GENE 1 2 - 283 233 93 aa, chain + ## HITS:1 COG:SA1603 KEGG:ns NR:ns ## COG: SA1603 COG3666 # Protein_GI_number: 15927359 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 93 16 108 116 169 86.0 1e-42 KFDEFRHHRGATSYHPKMMLKVVLYAYTQSVFSGRKIEKLLNDSIRMMWLSQNQKPSYKT INRFRVNPKVDALLESLFIQFHSQCLKQNIIDD >gi|224999882|gb|ACJC01000118.1| GENE 2 372 - 743 355 123 aa, chain + ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 3 123 166 286 522 94 43.0 4e-20 MNENSKVLYHELVINKIIPEIKKDHDNDLTKEEIDLIGSHLDKEIEGLNQHIDNEKCTKI RKQIRLKRTKIKKYKKQINDYSKRKHKYEVQKSILKDRNSYSKTDHDATFMRMKEDYMKN GQL >gi|224999882|gb|ACJC01000118.1| GENE 3 798 - 1164 116 122 aa, chain + ## HITS:1 COG:SA1605 KEGG:ns NR:ns ## COG: SA1605 COG3666 # Protein_GI_number: 15927361 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 121 17 137 259 194 78.0 4e-50 MYQNPTDTRTLIPFLNSIQETYGHLPEYIVADAGYGSEANYMAIIDNFNRTPLITYGMFK KDKTKKYKSDIFNTRNWDYYEINDEFICLNNQRLGFKRYAYRHDKYSFKRNFKLYECDDC SE Prediction of potential genes in microbial genomes Time: Sun May 29 07:47:18 2011 Seq name: gi|224999881|gb|ACJC01000119.1| Staphylococcus epidermidis W23144 contig00159, whole genome shotgun sequence Length of sequence - 5934 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 2, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 10/0.000 - CDS 66 - 1040 994 ## COG1466 DNA polymerase III, delta subunit 2 1 Op 2 4/0.000 - CDS 1085 - 3169 903 ## COG0658 Predicted membrane metal-binding protein - Prom 3242 - 3301 4.5 - Term 3228 - 3271 5.2 3 2 Op 1 4/0.000 - CDS 3305 - 3766 376 ## COG2131 Deoxycytidylate deaminase 4 2 Op 2 2/0.000 - CDS 3846 - 4436 543 ## COG1555 DNA uptake protein and related DNA-binding proteins - Prom 4461 - 4520 3.1 - Term 4503 - 4550 5.2 5 2 Op 3 6/0.000 - CDS 4567 - 5286 585 ## COG0500 SAM-dependent methyltransferases 6 2 Op 4 6/0.000 - CDS 5289 - 5642 503 ## COG0799 Uncharacterized homolog of plant Iojap protein 7 2 Op 5 . - CDS 5643 - 5882 270 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism Predicted protein(s) >gi|224999881|gb|ACJC01000119.1| GENE 1 66 - 1040 994 324 aa, chain - ## HITS:1 COG:SA1415 KEGG:ns NR:ns ## COG: SA1415 COG1466 # Protein_GI_number: 15927167 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Staphylococcus aureus N315 # 1 324 1 324 324 437 75.0 1e-122 MSNHIFTVYGEVPELVEKKTKEIVNDYLGQEIDDFNYVKYNLYESDLTPIIEETLTMPFF SDKKAIVVKNSYVFTGEKFSKDLNHNSDELIKFLEKYDGENLIIFEVYQSKLDERKKLTK TLKKNAQLKKIEQMSEKELKHWIKNTLNNNYKDIKQDALELFIELTGVNYNIVSQELEKL ILFIGERPIINKEDIDLIINRSLEQNVFLLTEYIQKGKKNKAIQLVNDLIIMKEEPIKLL ALITSNYRLYYQCKILSQKGYSGQQIAKTVNAHPYRVKLALNQSRHYKLESLFNIINACA ETDYKLKSSYMDKQLILELFILSL >gi|224999881|gb|ACJC01000119.1| GENE 2 1085 - 3169 903 694 aa, chain - ## HITS:1 COG:SA1416_1 KEGG:ns NR:ns ## COG: SA1416_1 COG0658 # Protein_GI_number: 15927168 # Func_class: R General function prediction only # Function: Predicted membrane metal-binding protein # Organism: Staphylococcus aureus N315 # 45 397 89 442 468 239 40.0 1e-62 MFISAISSFFLISSYNQTEIKNLNSLYSEPFIDDFVSFKSFTPKSTYYTGILNYKNKDYR YFYKALKSNLKQDLTHKSCRVKGEFKFDKEFLLLNISTVQFKSCQENSIFTPIYHHQNYI TKIIHKSGVTHPERILALITGDTSLIDEYYKSNIRDIGIYHLLAISGTHVGTIIVLVYQL LVRLNIPLVLIKGVTILLLLIYAVYTGFVPSAMRAISIAIIILMLPIHFRKSSIHVLSFI FVLMIVLNPQFINHIGFQFSFLISLFIILTKSYISGLKPLKCLFIISFLAQLGSIVINTY HFNQFQWIGLLSNFIFVPFYSFILFPSVIIYFILIHIFQHSFLLNTYINILFKIHDWIVH LFLNLNHFKWYIPKLNQYSLLILIILTLIFLYILVYRGIVTSVLSFLIVLIIFTHLIGPH YAELTLFDVGQGDSILFKTKSNKNVLIDTGGKRNENVSFKHNNIAKYKILPSIKKKGITT INYLVITHPHADHMGELIYFLNNINVNNLVLNIEIFPLELLKEVTTKCKEKEIKIIDVNQ VKKIEIDNSKISFLNSFIPLSDDKNEHSIVTLIQYNDINILLMGDATVNNEDILMKRYNL SKIDILKVGHHGSRTSSSELFIKDIEPKISLISSGKNNKYHLPNLDVIQRLKYYGSKVFD TQDNGELTINLDEEVYIVYRDILNQKSLARESIS >gi|224999881|gb|ACJC01000119.1| GENE 3 3305 - 3766 376 153 aa, chain - ## HITS:1 COG:SA1417 KEGG:ns NR:ns ## COG: SA1417 COG2131 # Protein_GI_number: 15927169 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Staphylococcus aureus N315 # 1 152 1 152 153 294 94.0 5e-80 MERIKWEEYFMAQSHLLALRSTCRRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLI EDGHCIRTIHAEMNALLQCAKQGVSTEGATIYVTHFPCLNCTKSIIQAGIKTIYYAQDYH NHDYAIKLLKQSGIEYKKIPFSPEYVAQYLTQE >gi|224999881|gb|ACJC01000119.1| GENE 4 3846 - 4436 543 196 aa, chain - ## HITS:1 COG:SA1418 KEGG:ns NR:ns ## COG: SA1418 COG1555 # Protein_GI_number: 15927170 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Staphylococcus aureus N315 # 1 196 27 225 225 127 39.0 1e-29 MLITFFLYLFNDNNSDLKQNSQEGQSKLSDQQITNNKKLNKKEVSIQKDNTKETKIFIDI KGAVKHPNVYEMSSSNRVNKAEVLKDADLSQLNLSEKLVDQKLIYVPKKGENSMKIDSQQ AALNSSDVKINTNQPLNLNSATEEQLKNIPGIGPSKAKDILNYREKNNGFNSINDLMKIK GFGKKTFEKLKEHFTI >gi|224999881|gb|ACJC01000119.1| GENE 5 4567 - 5286 585 239 aa, chain - ## HITS:1 COG:SA1419 KEGG:ns NR:ns ## COG: SA1419 COG0500 # Protein_GI_number: 15927171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Staphylococcus aureus N315 # 1 239 1 238 238 284 60.0 8e-77 MNQYEDMSLVYDQLTQDQPYHSWFNIVQHFLPSDSHDLLDIGCGTGNLTQLLTSLGEVTG MDISVDMLSIASQKTNQVKWIEGNMTHFNLNKKFNMITIFCDSLNYLETLNDVKMTFERV YQHLNKNGVFIFDVHTVHKMKTLFNNKSYIDESDNVFVGWDAICGEEPLSVYHEMTFFVS QQNGLYRRFDESHYQRTYDEQIYRNLLQDVGYHSVKTFTDFNIHSHEEDAHRLFFVAKK >gi|224999881|gb|ACJC01000119.1| GENE 6 5289 - 5642 503 117 aa, chain - ## HITS:1 COG:SA1420 KEGG:ns NR:ns ## COG: SA1420 COG0799 # Protein_GI_number: 15927172 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Staphylococcus aureus N315 # 1 117 1 117 117 163 76.0 6e-41 MNSEELLNIAVEAAENKKAEDIISLNMNEISDMTDYFVVCHGNNERQVQSIAKSVKEVAH KHDIEVKRMEGYQEARWILIDLANVVVHVFHKDERSYYNLEKLYQDAPIKEYGQAVF >gi|224999881|gb|ACJC01000119.1| GENE 7 5643 - 5882 270 79 aa, chain - ## HITS:1 COG:SA1421 KEGG:ns NR:ns ## COG: SA1421 COG1713 # Protein_GI_number: 15927173 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Staphylococcus aureus N315 # 1 79 116 194 194 135 88.0 2e-32 MTKTEKLVFIADYIEPGRKTPGVEEIRDMAYNQGSLDKTIYEISKRTVLFLIEKDITVYD ATIACLNYYNYSDERIKDD Prediction of potential genes in microbial genomes Time: Sun May 29 07:47:27 2011 Seq name: gi|224999880|gb|ACJC01000120.1| Staphylococcus epidermidis W23144 contig00160, whole genome shotgun sequence Length of sequence - 29524 bp Number of predicted genes - 31, with homology - 30 Number of transcription units - 10, operones - 7 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 9/0.000 - CDS 2 - 293 380 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 2 1 Op 2 7/0.000 - CDS 280 - 855 292 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 3 1 Op 3 4/0.000 - CDS 855 - 1145 297 ## PROTEIN SUPPORTED gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein 4 1 Op 4 4/0.000 - CDS 1145 - 1903 598 ## COG0169 Shikimate 5-dehydrogenase 5 1 Op 5 6/0.000 - CDS 1970 - 3070 1021 ## COG1161 Predicted GTPases 6 1 Op 6 1/1.000 - CDS 3071 - 3574 551 ## COG2179 Predicted hydrolase of the HAD superfamily 7 1 Op 7 . - CDS 3618 - 4304 706 ## COG0775 Nucleoside phosphorylase - Prom 4409 - 4468 6.7 8 2 Op 1 7/0.000 - CDS 4503 - 5747 1300 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family 9 2 Op 2 1/1.000 - CDS 5759 - 6517 819 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 10 2 Op 3 27/0.000 - CDS 6514 - 7872 1435 ## COG0439 Biotin carboxylase 11 2 Op 4 1/1.000 - CDS 7886 - 8326 626 ## COG0511 Biotin carboxyl carrier protein 12 2 Op 5 21/0.000 - CDS 8327 - 9331 995 ## COG1984 Allophanate hydrolase subunit 2 13 2 Op 6 1/1.000 - CDS 9321 - 10052 720 ## COG2049 Allophanate hydrolase subunit 1 - Prom 10149 - 10208 9.4 - Term 10316 - 10354 4.0 14 3 Op 1 4/0.000 - CDS 10539 - 11015 721 ## COG0782 Transcription elongation factor 15 3 Op 2 3/0.333 - CDS 11046 - 11669 687 ## COG0572 Uridine kinase 16 3 Op 3 13/0.000 - CDS 11669 - 12937 1367 ## COG0826 Collagenase and related proteases 17 3 Op 4 4/0.000 - CDS 12955 - 13878 1049 ## COG0826 Collagenase and related proteases 18 3 Op 5 1/1.000 - CDS 13881 - 14516 499 ## COG4122 Predicted O-methyltransferase - Prom 14677 - 14736 5.8 - Term 14832 - 14872 -0.1 19 4 Op 1 7/0.000 - CDS 14945 - 15253 597 ## COG3906 Uncharacterized protein conserved in bacteria 20 4 Op 2 6/0.000 - CDS 15268 - 15696 563 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 21 4 Op 3 4/0.000 - CDS 15698 - 15958 330 ## COG4472 Uncharacterized protein conserved in bacteria 22 4 Op 4 1/1.000 - CDS 16022 - 18652 2706 ## COG0013 Alanyl-tRNA synthetase - Prom 18835 - 18894 4.8 - Term 18715 - 18759 4.9 23 5 Op 1 4/0.000 - CDS 18981 - 21413 2484 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 24 5 Op 2 2/0.333 - CDS 21415 - 22083 695 ## COG0457 FOG: TPR repeat - Prom 22171 - 22230 11.7 - Term 22188 - 22234 5.0 25 6 Op 1 7/0.000 - CDS 22245 - 23363 1221 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 26 6 Op 2 . - CDS 23363 - 24505 1306 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Prom 24534 - 24593 9.9 + Prom 24616 - 24675 9.3 27 7 Tu 1 . + CDS 24750 - 25745 1164 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases + Term 25778 - 25818 -0.9 - Term 25862 - 25923 21.2 28 8 Op 1 . - CDS 25949 - 26092 226 ## - Prom 26200 - 26259 7.9 29 8 Op 2 . - CDS 26279 - 26701 505 ## COG1959 Predicted transcriptional regulator + Prom 26711 - 26770 6.2 30 9 Tu 1 . + CDS 26886 - 28058 1134 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase + Term 28110 - 28148 5.2 - Term 28096 - 28134 5.2 31 10 Tu 1 . - CDS 28230 - 29006 727 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 Predicted protein(s) >gi|224999880|gb|ACJC01000120.1| GENE 1 2 - 293 380 97 aa, chain - ## HITS:1 COG:SA1421 KEGG:ns NR:ns ## COG: SA1421 COG1713 # Protein_GI_number: 15927173 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Staphylococcus aureus N315 # 1 97 1 97 194 152 76.0 2e-37 MEISKAKELVKEKLPDKRYQHSLRVADTAVKLAEIYDGDIKKAELAGILHDYCKYEDLST MYQIVRQYDLESDLLSYGGEILHGPVCAAIMKHEFGV >gi|224999880|gb|ACJC01000120.1| GENE 2 280 - 855 292 191 aa, chain - ## HITS:1 COG:SA1422 KEGG:ns NR:ns ## COG: SA1422 COG1057 # Protein_GI_number: 15927174 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Staphylococcus aureus N315 # 3 188 2 187 189 234 60.0 8e-62 MNQKIVLFGGQFNPIHTAHLAVASEVYHAIKPDIFFFLPSYMAPLKHHNTQLYSVQRVKM IQLAIKEIGFGEICTTDLDRKGPSYTYETILHLRKIYHNAQLYFIIGTDQYKQLDKWYKI NELKKLVTFIVVNRETDNQNVSKEMISIKIPRIDISSTMIRNRVKMNQSIKVLVPKGVEN YIKEEGLYGDK >gi|224999880|gb|ACJC01000120.1| GENE 3 855 - 1145 297 96 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Anoxybacillus flavithermus WK1] # 1 96 1 96 97 119 59 3e-26 MLTGKQKRYLRSLAHNIDPTFQIGKGGINENMIQQISETLEKRELIKIHILQNNFDDKKD LAALVAEQTQSELVQIIGSMIVLYKESEENKEIKLP >gi|224999880|gb|ACJC01000120.1| GENE 4 1145 - 1903 598 252 aa, chain - ## HITS:1 COG:SA1424 KEGG:ns NR:ns ## COG: SA1424 COG0169 # Protein_GI_number: 15927176 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Staphylococcus aureus N315 # 1 251 18 268 268 350 69.0 1e-96 MHHANFQSLNLESTYEAINVPVNQLQDIKKIISEKGIDGFNVTIPHKERIIPYLDDINEQ AKSVGAVNTVLIKDGKWIGYNTDGIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELY KIVRPTITIANRTMSRFNNWSLNINKINLSHAERHLDEFDIIINTTPAGMYGNKDSVISL NRLASHTLVSDIVYNPYKTPILIEAEQKGNPIYNGLDMFVHQGAESFKIWTNLEPDIEAM KNVVIHELKGEL >gi|224999880|gb|ACJC01000120.1| GENE 5 1970 - 3070 1021 366 aa, chain - ## HITS:1 COG:SA1425 KEGG:ns NR:ns ## COG: SA1425 COG1161 # Protein_GI_number: 15927177 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 1 366 1 366 366 609 83.0 1e-174 MNEILKCIGCGAPLQSENKDAPGYVPEHNMFREDVICRRCFRLKNYNEVQDVGMESEDFL NLLTGLSEKKGIIVNVVDVFDFEGSFINAIQRIVGNKKIILVANKIDLLPKQINHRRVKE WLRKSARKYGLEAEDVVLISANKGWGIDELLQSINHVRNKDDVYIVGTTNVGKSTLINKL IEQSVGEKDVVTTSRFPGTTLDMIDIPLDEKSFMFDTPGIIQSHQMTNYVSENELKIIIP KNEVKQRVYQLNEKQTLFFGGLARIDYVSGGKRPLVCFFSNDLNIHRTKTEKANDLWKSQ LGALLSPPQDAQQFNLNDVKAVRLETGKTKRDIMISGLGFITIDAGAKVIVRVPKHVDVI LRNSIL >gi|224999880|gb|ACJC01000120.1| GENE 6 3071 - 3574 551 167 aa, chain - ## HITS:1 COG:SA1426 KEGG:ns NR:ns ## COG: SA1426 COG2179 # Protein_GI_number: 15927178 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 167 9 175 175 259 77.0 2e-69 MPNAYVKSIFEIDIEKLADSGVKGIITDLDNTLVGWDVKEPTNGVKSWFAKAKDLGITVT IVSNNNKSRVSSFSSSLGVDYIFKARKPMGKAFKMAIKKMKIQPRETVVVGDQMLTDVFG GNCNGLYTIMVVPVKRTDGLITKFNRLIERRLLNHFRKKGYIKWEEN >gi|224999880|gb|ACJC01000120.1| GENE 7 3618 - 4304 706 228 aa, chain - ## HITS:1 COG:SA1427 KEGG:ns NR:ns ## COG: SA1427 COG0775 # Protein_GI_number: 15927179 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 304 71.0 1e-82 MIGIIGAMEEEVTILKRKLNDMNEINIAHVKFYVGTLNHKEVVLTQSGIGKVNASISTTL LIEKFNPEVVINTGSAGALDQTLSIGDILVSNHVLYHDANATAFGYEYGQIPQMPKTYTT DPTLLKKTMHVLEQQQLNGKVGMIVSGDSFIGSSEQRQKIKQQFPEAMAVEMEATAIAQT CYQFKVPFIVTRAVSDLANGKADISFEEFLDKAALSSSETVSLLVESL >gi|224999880|gb|ACJC01000120.1| GENE 8 4503 - 5747 1300 414 aa, chain - ## HITS:1 COG:SA1432 KEGG:ns NR:ns ## COG: SA1432 COG1914 # Protein_GI_number: 15927184 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 1 412 1 409 409 582 85.0 1e-166 MGENTKQDFNQNGQNFKFTKRHRRLLYGSVFLMATSAIGPAFLTQTAVFTAQFYASFAFA ILISIIIDIGAQINIWRILVVTGLRGQEISNKVLPGLGTIISILIAFGGLAFNIGNIAGA GLGLNAIFGLDVKWGAAITSIFAILIFVSRSGQKIMDIISMILGIVMILVVAYVMVVSNP PYGDALVHTFAPEHPFKLILPIITLVGGTVGGYITFAGAHRILDSGIKGKTYLPFVNRSA IAGILTTGVMRTLLFLAVLGVVVTGVTLSSDNPPASVFQHALGPIGKNIFGVVIFAAAMS SVIGSAYTSATFLKTLHKSLFHKNNLIVIIFIVISTFIFLFIGKPVSLLIIAGAINGWIL PITLGAILIASRKKSIVGDYQHPTWMLVFGIIAVIVTIMTGIFSLQDLASLWKG >gi|224999880|gb|ACJC01000120.1| GENE 9 5759 - 6517 819 252 aa, chain - ## HITS:1 COG:SA1433 KEGG:ns NR:ns ## COG: SA1433 COG1540 # Protein_GI_number: 15927185 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Staphylococcus aureus N315 # 3 252 1 250 250 386 73.0 1e-107 MKLKIDLNCDLGEAFGNYTFGGDQHILPLITSANIACGYHAGDEDVMNETVQLAKKNNIS IGAHPGLPDLKGFGRRKMDLTPNEIYNLVVYQLGALSGFCKINHVKMMHVKPHGALYQMG ARNKEIAHAIAQAVFDFDSNLIFVGLANTLLISEAELVGLRVASEVFADRRYEDDGQLVS RKKTDATITNTDEAIQQALKMVLENKVVSKNGRIIDLKADTICVHGDGEHALEFVTEIRN ELMKEGIDIQSL >gi|224999880|gb|ACJC01000120.1| GENE 10 6514 - 7872 1435 452 aa, chain - ## HITS:1 COG:SA1434 KEGG:ns NR:ns ## COG: SA1434 COG0439 # Protein_GI_number: 15927186 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Staphylococcus aureus N315 # 1 452 1 452 453 720 80.0 0 MYRCLIANRGEIAVRIIRACRELNIETVAIYAKGDETSLHVSLADQAICIGEANPLDSYL NIDRIISAAKVTESNAIHPGYGFLSESTNFAKAVEDNHIHFIGPSKTTMEMMGDKITARQ TVKQAGVPVIPGSNDAVQSVDEIKLLAKEIGFPVVLKAASGGGGKGIRIVKEASQLDQAL KEAKSEGQKYFNDDRVYVEAFIPVAKHVEVQIIGDGKNNYVHLGERDCSVQRKNQKLIEE APCAALTEQRRTRICSDAVKVAQASRYRSAGTIEFLVTEDAHYFIEMNARIQVEHTVTEM RADRDLLQAQLYLLTHGELPFTQKDILFNGHVIEARINAENPEKNFLPTPGKVNKLHLPQ GFNIRVDSLLYTGYQVSPYYDSLVAKVIVKDSNRQTAINKLKVALDELVIEGFTTTADFL YAVLNYPIYAKGDASKVDIKFLEKHQIIKEVK >gi|224999880|gb|ACJC01000120.1| GENE 11 7886 - 8326 626 146 aa, chain - ## HITS:1 COG:SA1435 KEGG:ns NR:ns ## COG: SA1435 COG0511 # Protein_GI_number: 15927187 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Staphylococcus aureus N315 # 1 146 1 149 149 142 58.0 3e-34 MDIKKIEKVIKLVKANDVKKFKYKDAHNEIELDFTNGASQQYSQQSSQDIQQDNIKSYDE KQEAISNDQQEIKSPMVGTFFLQDSKELTEPKIKVGDTVTEGDVIGYIEAMKVMNEVTTD VSGEVTEILVEHGDNVEYDQLLVRVK >gi|224999880|gb|ACJC01000120.1| GENE 12 8327 - 9331 995 334 aa, chain - ## HITS:1 COG:SA1436 KEGG:ns NR:ns ## COG: SA1436 COG1984 # Protein_GI_number: 15927188 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Staphylococcus aureus N315 # 1 333 1 335 336 392 58.0 1e-109 MSIKILKPGLFSTIQDIGRIGYQDLGFSEAGALDYYSFSIAQKLIGNQGPAIEYTLVGPN IEFLTDNTFAIVGGNSEPKLNGNKIDLLTVYHVRNGDQLDIGQITEGARGYIVFGHPLKI DKVAQSYSTHVRSGMGGFKGRALKKYDVIATQVNHNYKTNLGKTIDFSSIPDNNYIHVIE GPQINEFDEETIAKFVNSEFKISDQSDRMGYRLKGNTVAPKNSADIISEPVALGSIQVPN DGNPIILLNDKQTIGGYTKIATVTQLDLRKLAQMKPGDIIQFEWITVEEASKKLKEFKSK FEQLLKRFDEQPLFNLNHIRHTSNKIAEIIKEDR >gi|224999880|gb|ACJC01000120.1| GENE 13 9321 - 10052 720 243 aa, chain - ## HITS:1 COG:SA1437 KEGG:ns NR:ns ## COG: SA1437 COG2049 # Protein_GI_number: 15927189 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Staphylococcus aureus N315 # 1 241 1 242 244 301 60.0 6e-82 MRTQFINEQTIMIYFENEISESTFKKVQQTIQYIKSKNLSEITNIVPSYRAILIYFDNSE INGAELLENLEFDEGLNSGKQSHFKQRIIHIPVLYGGDFGPDLSEVANVNKLSQEAVIQI HTQQPYLIYMLGFMPGFPYLGGLDAKLHTPRRSEPRIKINAGSVGIANNQTGLYPMDSPG GWQIIGRTPIKVFDLNRSPMTLYEAGDYIQFYSINYQEFEKISNDINKGKFDIDKWVTYQ DEY >gi|224999880|gb|ACJC01000120.1| GENE 14 10539 - 11015 721 158 aa, chain - ## HITS:1 COG:SA1438 KEGG:ns NR:ns ## COG: SA1438 COG0782 # Protein_GI_number: 15927190 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 234 91.0 6e-62 MENQKQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGF IEQDIQRIEHMIRNALIIEDNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGK ISNESPMAIALIGKGLNDQVRVPLPNGGEMNVKIVEIK >gi|224999880|gb|ACJC01000120.1| GENE 15 11046 - 11669 687 207 aa, chain - ## HITS:1 COG:SA1439 KEGG:ns NR:ns ## COG: SA1439 COG0572 # Protein_GI_number: 15927191 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Staphylococcus aureus N315 # 17 207 17 207 207 325 90.0 5e-89 MNQTTIIGIAGGSGSGKTTVTNAIMKNLEGHSVALLAQDYYYKDQSHLTFEERLETNYDH PFAFDNDLLIHNLKDLRNGKPVEVPTYDYSQHTRSKETIAFDPKDVIIVEGIFALENKTL RDMMDVKIYVDTDADLRILRRLTRDTKERGRTMESVINQYLNVVRPMHEQFIEPTKKHAD IIIPEGGSNKVAIDIMTTKIQSLVSKK >gi|224999880|gb|ACJC01000120.1| GENE 16 11669 - 12937 1367 422 aa, chain - ## HITS:1 COG:SA1440 KEGG:ns NR:ns ## COG: SA1440 COG0826 # Protein_GI_number: 15927192 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Staphylococcus aureus N315 # 1 422 1 422 422 777 87.0 0 MKTLEEVKSKTQKIMKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTME EIAEGVDFANHYGAKIYVTTNIIAHDENMEGLEEYLQNLESTGATGIIVADPLIIETCKK VAPRLEIHLSTQQSLSNYKAVEFWKQEGLDRVVLARETGAMEMSEMKEKVDIEIEAFIHG AMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYDLLEVDSDGDLDLYYDNSDVTPFAMS PKDLKLIESIPQMMELGIDSLKIEGRMKSIHYIATVVSVYRKVIDAYAEDPENFKIKPEW LMELNKCANRDTAPAFFQGTPGYEEQMFGEEQSKKSSYDFCGLVLDYDHETQLATIQQRN HFKPGQEIEFFGPEIDSFKQVVEAIYDEEGNSLDAARHPLQIVQIKVDKPIYSNNMMRKE IG >gi|224999880|gb|ACJC01000120.1| GENE 17 12955 - 13878 1049 307 aa, chain - ## HITS:1 COG:SA1441 KEGG:ns NR:ns ## COG: SA1441 COG0826 # Protein_GI_number: 15927193 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Staphylococcus aureus N315 # 1 307 1 307 307 533 85.0 1e-151 MVELLVTPKSITHMETLIDKGADAFVIGEQKFGLRLPGEFNRDAMQEAVALAHKNNKKVY AAVNGIFHNYHLDALEDYINFLHDIQVDRIIFGDPAVVMYVKQHEHPIPLNWDAETLVTN YFQCNYWGKKGANRAVLARELSLDEIIHIKEHADVEIEVQVHGMTCMFQSKRMLLGNYYT FQERQMKIERQHDHGDLLLYDEERDNKYPVFEDYNGTHIMSPNDICLIEELEPFFEAGID AFKIDGILQSEEYINVVTEQYREAIDLFNEDPDAYEDEKFMLVDPIEEIQPEHRPFDEGF LYKQTVY >gi|224999880|gb|ACJC01000120.1| GENE 18 13881 - 14516 499 211 aa, chain - ## HITS:1 COG:SA1442 KEGG:ns NR:ns ## COG: SA1442 COG4122 # Protein_GI_number: 15927194 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Staphylococcus aureus N315 # 2 211 3 212 212 280 72.0 1e-75 MDSNQKYLTQLHQSIDTEIEELRVYAEENQVPIVDKLTLDLIRQLIRMNRTKNILEIGTA IGYSSMQFANISKDINVTTIERNEDMIHLAKKFINKYRYQNQIRIIEYDALNAFEQVNDK QYDMIFIDAAKAQSKKFFQLYTPLLKKGGIVVTDNVLYHGFVSNIDVVRSRNVKQMVKKV QQYNEWLMEQSQFTTNFINMDDGLAISIKGE >gi|224999880|gb|ACJC01000120.1| GENE 19 14945 - 15253 597 102 aa, chain - ## HITS:1 COG:SA1443 KEGG:ns NR:ns ## COG: SA1443 COG3906 # Protein_GI_number: 15927195 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 1 102 102 127 89.0 5e-30 MTEHNHDAELTINNEEELLTLYDENGNEVLYRKMLEFYHPEFKKEYVVLAEEGAQSDDED MIELVPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTEINE >gi|224999880|gb|ACJC01000120.1| GENE 20 15268 - 15696 563 142 aa, chain - ## HITS:1 COG:SA1444 KEGG:ns NR:ns ## COG: SA1444 COG0816 # Protein_GI_number: 15927196 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Staphylococcus aureus N315 # 20 142 1 123 123 199 85.0 2e-51 MLKHKILGLDVGSKTVGIAISDLMGWTAQGLDTLRINEEQEDLGIDQLVKIIKDNQVGTV VIGLPKNMNNSIGFRGEASIKYKEKLQESVPSIDIVMWDERLSTMAAERSLLEADVSRQK RKKVIDKMAAVFILQGYLDSIQ >gi|224999880|gb|ACJC01000120.1| GENE 21 15698 - 15958 330 86 aa, chain - ## HITS:1 COG:SA1445 KEGG:ns NR:ns ## COG: SA1445 COG4472 # Protein_GI_number: 15927197 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 83 1 83 86 132 87.0 2e-31 MENFDKTMKFSYEEIPKEDVKSVLQNVHRTLEERGYNAVNQIVGYLLSGDPAYIPRQNEA RNQIRHIDRDVIMEELVSNYLKESKN >gi|224999880|gb|ACJC01000120.1| GENE 22 16022 - 18652 2706 876 aa, chain - ## HITS:1 COG:SA1446 KEGG:ns NR:ns ## COG: SA1446 COG0013 # Protein_GI_number: 15927198 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 876 1 876 876 1457 83.0 0 MKKMKASEIRQKYLDFFVEKGHMIEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK PRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKHEAIEFAWEFLTSDKWMGM EPEKLYVTIHPEDTEAYRIWHEDIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGLAY GKDDPAEEMYPGGENERYLEVWNLVFSEFNHNKDNTYTPLPNKNIDTGMGLERMTSISQN VRTNYETDLFMPIIKEVEHVSGKKYLIDDAQDVAFKVIADHIRTISFAIADGALPANEGR GYVLRRLLRRAVRFSQSLGINEPFMYKLVDIVADIMEPYYPNVKDKSHFIKRVIKSEEER FHETLEEGLTILNELIKEAKNSDQVIKGHDAFKLYDTYGFPIELTEELATQENLSVDMPT FEQEMQQQRDRARQARQNSQSMQVQSEVLKNIQDDSQFVGYETTDYQSLLTHIIYNGEEV KHAEAGETIYFILRETPFYAVSGGQVADKGTVGNENFEINVTDVTKAPNGQNLHKGVVQF GEATQNAKVEARVNKEDRRLIQKNHSATHLLHAALKEVLGDHVNQAGSLVEPERLRFDFS HFGPMTQEEINLVERRVNEEIWRAIDVRIQEMSIEEAKSIGAMALFGEKYGDIVRVVNMA PFSIELCGGIHVNNTAEIGLFKIVSESGTGAGVRRIEALTGKGAFLHLEEIETQFNTIKN HLKVKSDNQVVEKVKQLQEEEKELLKQLEQRNKEITSLKLGNIEEQVELINDLKVLATEV EIPNPKAIRSIMDDFKSKLQDTIIVLVGQVDGKVSVIATVPKSLTNQVKAGDLIKNMTPI IGGKGGGRPDMAQGGGTQPEKITEALRFIKDYIKNL >gi|224999880|gb|ACJC01000120.1| GENE 23 18981 - 21413 2484 810 aa, chain - ## HITS:1 COG:SA1447 KEGG:ns NR:ns ## COG: SA1447 COG0507 # Protein_GI_number: 15927199 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Staphylococcus aureus N315 # 1 809 1 824 825 1222 79.0 0 MSDPTLFDYSMIKGTVDTILFQNTDNFYTVLKVDTIESNEKFDSMPTVVGFLPNVVEGDV YTFKGQVVQHPRYGKQLKAERFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNTLGEN AINDILTRPEILENVPSLPKKKQKQIADQINANQESEKIMIRLHDLGFGPKLSMAIYQFY MGDTLNVLDKNPYQLVYDIKGIGFNKADQLARNVGIEPHSPERLKAALLFTLEEECIKQG HTYLPRTIVIETTQNLLNEDVEKPVETEQLIEIIDVLSEEKKLVSEADQVSIPSLYYSEL KSVQNLYRIKTNTSKLKEIEQSDLQIHIGDIESQNEVNYSASQKEALETAINSKIMLLTG GPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLAAPTGRASKRLHESTGLEAMT IHRLIGWNQDTQPQDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLEAQIVFVGDEDQ LPSVGPGQVFKDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSF IRCGTNQIPDVVDKVVKSAVAKGYDMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKQQDD REIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFWAKENALNKDVLVIDFEGNEI TFTKQDLMELTHAYCTSIHKSQGSEFPIVIMPIVRQYYRMLQRPILYTGLTRAKQSLVLL GEQEAFDIGLKTNGQTRLTQLNDLLKSYFGQNKNNLNTNKQTINEQKQNENQLDLNNEKE NDIQLNESTIFQIDPMINMGEMTPYDFVEH >gi|224999880|gb|ACJC01000120.1| GENE 24 21415 - 22083 695 222 aa, chain - ## HITS:1 COG:SA1448 KEGG:ns NR:ns ## COG: SA1448 COG0457 # Protein_GI_number: 15927200 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Staphylococcus aureus N315 # 1 222 1 222 222 294 72.0 1e-79 MHEQSKIYQNIKDGKLDTALKDLFENIEENPAIVENYINAGIVLSDVGEIEKAERFFQKA LTIEPENGAVYYNLANIYYNEERYNEAIKLYQTALQYEVAKKDCNYMIGMSFNQLGAFKE ALPFLMTAAELDDDRDLEVQFQYGLVLCQLEMFDEAIKQLNKVLSIDSQHVDGIYNLGLA TYMKNEDLDEAIAYFEQAISIDEKHLLSQHALKTFKTMKEEE >gi|224999880|gb|ACJC01000120.1| GENE 25 22245 - 23363 1221 372 aa, chain - ## HITS:1 COG:SA1449 KEGG:ns NR:ns ## COG: SA1449 COG0482 # Protein_GI_number: 15927201 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Staphylococcus aureus N315 # 1 372 1 372 372 700 89.0 0 MSNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIA VCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA DYVATGHYARIRRHEDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDVEKSEVRR IAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLPAQSGEMLTLNGKKMGQHSGLMYYTI GQRHGLGIGGDGDPWFVVGKNLNDNILYVEQGFHHDALYSDYLIASDFSFVNPSEIDLEK GFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFYNQEVCLGGATIDD VYKNEGQLSYVV >gi|224999880|gb|ACJC01000120.1| GENE 26 23363 - 24505 1306 380 aa, chain - ## HITS:1 COG:SA1450 KEGG:ns NR:ns ## COG: SA1450 COG1104 # Protein_GI_number: 15927202 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Staphylococcus aureus N315 # 1 380 1 380 380 596 79.0 1e-170 MEVYADYAATTPVKQEVIDAMMEIYQSHFGNPSSIHSIGRDARKYLDQSRRTVAQLLGAN PNEVIFTSGATESNNTAIKGLVKANEQLGNHIITTKIEHHSVLHVYEQLEKEGYDVTYLD VDDTGAVDLDQLKETINDRTILVSIMFVNNEIGTVQNIYDIEDIIADTHALFHVDAVQAI GHLDLDFHNFKIDTMSISAHKFGGPKGVGLLLVKEYTPIAYNQLGGEQETKRRAGTENLP QIVGLTKALELAITNQDANNVHLMNLKELFLVQLQERAIPFELNGSMTDSTGHILNIYFP FIDVETMLTLLDLAHVYVSSGSACTAGSTTPSHVLAAMFEDEERAKHSVRFSFNEQTTPQ EIKYIVAEIHKIYHKFKEES >gi|224999880|gb|ACJC01000120.1| GENE 27 24750 - 25745 1164 331 aa, chain + ## HITS:1 COG:SA1451 KEGG:ns NR:ns ## COG: SA1451 COG2141 # Protein_GI_number: 15927203 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 4 329 3 328 337 526 77.0 1e-149 MKNIKLSALNLVPIREGQEDKDAINDMVTLAQALDDLDYERYWIAEHHNAPNLVSSATSL LIQHTLEHTHSIKVGSGGIMLPNHAPLVVAEQFGTLETLFPQRVDLGLGRAPGTDMMTAS ALRRDQHNGVYQFPEEVEQLQQYFGPGHQQAYVRAYPAVNKNVPMYILGSSTDSAHLAAR KGLPYVFAGHFAPQQMKEALQIYRELFEPSEVLDKPYVIVCLNTIVSDSDEQAEYLATTM SQIMVSITRGKMQPVQPPTDDLKALLTPREYELAQQRIKGSLIGSEDTVKQKLESFIKEY GDIDELMAISYIYDQDKQIESYRRLERAIKS >gi|224999880|gb|ACJC01000120.1| GENE 28 25949 - 26092 226 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGFMDKAKEAAEKFKDSDNEQVNKVKDKINEYTGGEDNKDKNDKKDK >gi|224999880|gb|ACJC01000120.1| GENE 29 26279 - 26701 505 140 aa, chain - ## HITS:1 COG:SA1453 KEGG:ns NR:ns ## COG: SA1453 COG1959 # Protein_GI_number: 15927206 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 140 1 140 140 258 92.0 3e-69 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSEPPAQKQLWIRMRDAVRDVLDHTTL KYLADYKDTNEDLDGYMFYI >gi|224999880|gb|ACJC01000120.1| GENE 30 26886 - 28058 1134 390 aa, chain + ## HITS:1 COG:SA1454 KEGG:ns NR:ns ## COG: SA1454 COG2256 # Protein_GI_number: 15927207 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Staphylococcus aureus N315 # 1 386 34 419 424 667 87.0 0 MVDTKRLSSMIFYGPPGIGKTSIAKAISGSTQFKFRQLNAVTNTKKDMQLVVEEAKMSGQ VILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNQ DDIRLALDRAINDKERGLSTYHPIVDEDAIEYFSTQSQGDVRSALNALELAVLSAHIDEQ NERHITLDDAKDCLQKGAFVSDKDGDMHYDVMSAFQKSIRGSDVNAALHYLARLIEAGDL PTIVRRLLVISYEDVGLASPNAGQRTLAAIQSAERLGFPEARIPLSQAVIELCLSPKSNS GITAIDKALGDIRNGHIGQIPDYLKDGHYSGAKKLGRAIGYKYPHNYENGHVVQQYLPEK LKNRVYYEPKTTSKSEQQFKTIYDNLRNKT >gi|224999880|gb|ACJC01000120.1| GENE 31 28230 - 29006 727 258 aa, chain - ## HITS:1 COG:SA1455 KEGG:ns NR:ns ## COG: SA1455 COG1179 # Protein_GI_number: 15927208 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Staphylococcus aureus N315 # 1 257 1 257 257 437 88.0 1e-123 MKHQFSRNELAIGQEGLDLLKNKTVAVLGVGGVGSFAAEALARTNIGHIILIDKDDVDIT NVNRQIHALTSTIGQSKVTLMEERIKLINPDCKVTSLHMFYTEETYKDIFNNYDIDYFID ASDTIIYKVHLMKECLERGIELISSMGAANKTDPTRFEIADISKTHTDPMAKVIRNRLKR LGIRKGVKVVFSDESPIVIREDVKETVGDKNAINRKGQMPPSSNAFVPSVVGLICASYVV NDILKDIPVRRIKDKGQN Prediction of potential genes in microbial genomes Time: Sun May 29 07:47:43 2011 Seq name: gi|224999879|gb|ACJC01000121.1| Staphylococcus epidermidis W23144 contig00161, whole genome shotgun sequence Length of sequence - 30816 bp Number of predicted genes - 29, with homology - 27 Number of transcription units - 10, operones - 7 average op.length - 3.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 13/0.000 - CDS 37 - 1803 2088 ## COG0173 Aspartyl-tRNA synthetase 2 1 Op 2 1/1.000 - CDS 1806 - 3080 1424 ## COG0124 Histidyl-tRNA synthetase - Prom 3138 - 3197 6.0 3 2 Op 1 1/1.000 - CDS 3452 - 4327 677 ## COG0860 N-acetylmuramoyl-L-alanine amidase 4 2 Op 2 7/0.000 - CDS 4324 - 4776 449 ## COG1490 D-Tyr-tRNAtyr deacylase 5 2 Op 3 9/0.000 - CDS 4790 - 6979 2032 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases - Term 7426 - 7472 4.6 6 2 Op 4 7/0.000 - CDS 7493 - 8011 696 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 7 2 Op 5 3/0.000 - CDS 8030 - 10303 1878 ## COG0608 Single-stranded DNA-specific exonuclease - Prom 10323 - 10382 6.4 - Term 10455 - 10506 13.0 8 3 Op 1 25/0.000 - CDS 10539 - 12770 2187 ## COG0342 Preprotein translocase subunit SecD - Prom 12803 - 12862 3.7 - Term 12996 - 13052 11.2 9 3 Op 2 15/0.000 - CDS 13178 - 13438 371 ## COG1862 Preprotein translocase subunit YajC 10 3 Op 3 17/0.000 - CDS 13454 - 14593 1056 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 11 3 Op 4 4/0.000 - CDS 14614 - 15639 958 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 12 3 Op 5 29/0.000 - CDS 15641 - 16645 892 ## COG2255 Holliday junction resolvasome, helicase subunit 13 3 Op 6 1/1.000 - CDS 16659 - 17261 687 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 14 3 Op 7 3/0.000 - CDS 17274 - 17729 282 ## COG4492 ACT domain-containing protein 15 3 Op 8 14/0.000 - CDS 17741 - 19033 1517 ## COG0536 Predicted GTPase - Prom 19066 - 19125 8.4 - Term 19123 - 19168 9.2 16 4 Op 1 14/0.000 - CDS 19179 - 19463 475 ## PROTEIN SUPPORTED gi|27468246|ref|NP_764883.1| 50S ribosomal protein L27 17 4 Op 2 14/0.000 - CDS 19475 - 19795 202 ## PROTEIN SUPPORTED gi|212638539|ref|YP_002315059.1| Predicted ribosomal protein 18 4 Op 3 1/1.000 - CDS 19800 - 20108 518 ## PROTEIN SUPPORTED gi|27468248|ref|NP_764885.1| 50S ribosomal protein L21 - Prom 20152 - 20211 2.2 - Term 20120 - 20152 -0.4 19 5 Op 1 19/0.000 - CDS 20230 - 20751 370 ## COG2891 Cell shape-determining protein 20 5 Op 2 . - CDS 20751 - 21542 944 ## COG1792 Cell shape-determining protein - Prom 21586 - 21645 3.4 - Term 21826 - 21864 4.0 21 6 Op 1 . - CDS 21982 - 22122 132 ## - Prom 22142 - 22201 3.4 22 6 Op 2 . - CDS 22206 - 22691 516 ## SERP1215 hypothetical protein - Prom 22712 - 22771 3.0 + Prom 22775 - 22834 5.0 23 7 Tu 1 . + CDS 22855 - 23034 234 ## + Term 23225 - 23268 -0.1 24 8 Op 1 2/0.000 - CDS 23098 - 23763 720 ## COG2003 DNA repair proteins 25 8 Op 2 3/0.000 - CDS 23775 - 24485 97 ## COG1989 Type II secretory pathway, prepilin signal peptidase PulO and related peptidases - Prom 24538 - 24597 9.1 - Term 24611 - 24660 -0.8 26 8 Op 3 8/0.000 - CDS 24669 - 25934 1407 ## COG0285 Folylpolyglutamate synthase 27 8 Op 4 . - CDS 25945 - 28575 2807 ## COG0525 Valyl-tRNA synthetase + Prom 28772 - 28831 5.6 28 9 Tu 1 . + CDS 28878 - 29477 289 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 29 10 Tu 1 . - CDS 29646 - 30644 846 ## COG3180 Putative ammonia monooxygenase - Prom 30744 - 30803 6.3 Predicted protein(s) >gi|224999879|gb|ACJC01000121.1| GENE 1 37 - 1803 2088 588 aa, chain - ## HITS:1 COG:SA1456 KEGG:ns NR:ns ## COG: SA1456 COG0173 # Protein_GI_number: 15927210 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 588 1 588 588 1038 88.0 0 MNKRTTYCGLVTEEFLNEKVTLKGWVHNRRDLGGLIFVDLRDREGIVQIVFNPDFSEEAL QVAETVRSEYVVEVQGVVTKRDAETINPKIKTGQVEVQVSNIEIINKSETPPFSINEENV NVDENIRLKYRYLDLRRQELAQTFKMRHQTTRSIRQYLDNNGFFDIETPVLTKSTPEGAR DYLVPSRVHEGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDI EMSFVDQEDIIAMGEDMLRKVVKDVKGIDVSGPFPRMTYAEAMDRYGSDKPDTRFGMELI NVSQLGKEMNFKVFKDTVDNNGEIKAIVAKDAADKYTRKDMDALTEFVNIYGAKGLAWVK VVDDGLSGPIARFFEDANVETLKQLTEAKPGDLVMFVADKPNVVAQSLGALRIKLAKELG LIDESKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKREDIEKLDTEPENVQANAYDIV LNGYELGGGSIRIHDGELQQKMFEVLGFTNEQAQEQFGFLLDAFKYGAPPHGGIALGLDR LVMLLTNRTNLRDTIAFPKTASATCLLTDAPGEVSDKQLQELSLRIRH >gi|224999879|gb|ACJC01000121.1| GENE 2 1806 - 3080 1424 424 aa, chain - ## HITS:1 COG:SA1457 KEGG:ns NR:ns ## COG: SA1457 COG0124 # Protein_GI_number: 15927211 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 419 1 419 420 705 84.0 0 MIKMPRGTQDILPQDSAKWRYIENRLHTLMELYNYKEIRTPIFESTELFARGVGDSTDVV QKEMYTFKDKGGRSLTLRPEGTAAVVRSYIEHKMQGEPNQPIKLYYNGPMFRYERKQKGR YRQFNQFGVEAIGAENPSIDAEILAMVMHIYESFGLKHLKLVINSIGDSESRKEYNEALV KHFEPVIDTFCSDCQSRLHTNPMRILDCKIDRDKEAVKNAPRITDYLNNDSKSYYEQVKL HLDNLNISYVEDPNLVRGLDYYTHTAFELMIDNPEYDGAITTLCGGGRYNGLLQLLDGPD ETGIGFALSIERLLMALDEEGISLDVSEDFDLFVVTMGEDADRYAVKLINDLRRNGIKVD KDYLNRKIKGQMKQADRLNAKYTVVIGDQELENNEIGVKNMISGETENVQLDELINYFKN RKEV >gi|224999879|gb|ACJC01000121.1| GENE 3 3452 - 4327 677 291 aa, chain - ## HITS:1 COG:SA1458 KEGG:ns NR:ns ## COG: SA1458 COG0860 # Protein_GI_number: 15927212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Staphylococcus aureus N315 # 1 291 1 291 291 404 71.0 1e-112 MKKIDSWLTKHGLKNRLTLVVIAIFIIFLILLFMFVNLSDEDTGQITITDNAELRTGPNA AYPVIYKIDKGESFKKIDRKGKWIEVQNHAGTEKGWVAGWHTNLNIPADQSLSSNPLKGK TIVLDPGHGGSDQGASSSTPSKSLEKNYTLKTAKELKKLLNKEGAHVKMTRSNDKYVSLD DRNIKGDAFISIHNDALDSSNANGVTVYWFKDKQESLAQTLNSAIQKKALLTNRGSRQQN YQVLRQTDIPAVLLELGYISNPTDESMINDQLHRQVVEQAIVDGLKQYFSS >gi|224999879|gb|ACJC01000121.1| GENE 4 4324 - 4776 449 150 aa, chain - ## HITS:1 COG:SA1459 KEGG:ns NR:ns ## COG: SA1459 COG1490 # Protein_GI_number: 15927213 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Staphylococcus aureus N315 # 1 149 1 149 150 220 76.0 7e-58 MKIIVQRVKNARVTNDTIDNQINKGYCLLVGVGQSSTEEDVKVIARKIAHARLFEDENDK LNLNIQQVEGEILSVSQFTIYADVKKGNRPGFSNSKAPEQAKDLYQKFNKELEGYGLIVK TGEFGTHMNVEIHNDGPVTLIYESQDGKII >gi|224999879|gb|ACJC01000121.1| GENE 5 4790 - 6979 2032 729 aa, chain - ## HITS:1 COG:SA1460 KEGG:ns NR:ns ## COG: SA1460 COG0317 # Protein_GI_number: 15927214 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Staphylococcus aureus N315 # 1 729 1 729 729 1331 91.0 0 MNNEYPYSADEVLYKAKSYLSTSEYEYVLKSYHIAYEAHKGQFRKNGLPYIMHPIQVAGI LTEMRLDGPTIVAGFLHDVIEDTSYTFEDVKDMFNEEIARIVDGVTKLKKVKYRSKEEQQ AENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMPREKQVRISKETLEIYAPLAHRLGI NTIKWELEDTALRYIDSVQYFRIVNLMKKKRSEREAYITNAINKIKNEMTKMNLSGEING RPKHIYSIYRKMIKQKKQFDQIFDLLAIRIIVNSINDCYATLGLVHTLWKPMPGRFKDYI AMPKQNMYQSLHTTVVGPNGDPLEIQIRTHEMHEIAEHGVAAHWAYKEGKTVNQKTQDFQ NKLNWLKELAETDHTSADAQEFMESLKYDLQSDKVYAFTPASDVIELPYGAVPIDFAYAI HSEVGNKMIGAKVNGKIVPIDYVLQTGDIIEIRTSKHSYGPSRDWLKIVKSSSAKSKIKS FFKKQDRSSNIEKGKFMVEAEIKEQGFRVEDILTEKNLEVVNEKYHFANDEDLYAAVGFG GVTSIQIVNKLTERQRILDKQKALNEAQEVTKSVPIKKDITTDSGVYVEGLENVLIKLSK CCNPIPGDDIVGYITKGHGIKVHRTDCPNIKNETDRLISVEWVKSKDSTQQYQVDLEVTA YDRNGLLNEVLQAVNSTAGSLIKVSGRSDIDKNAVINISVMVKNVNDVYRVVEKIKQLGD VYTVSRVWN >gi|224999879|gb|ACJC01000121.1| GENE 6 7493 - 8011 696 172 aa, chain - ## HITS:1 COG:SA1461 KEGG:ns NR:ns ## COG: SA1461 COG0503 # Protein_GI_number: 15927215 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Staphylococcus aureus N315 # 1 172 1 172 172 311 93.0 6e-85 MDLKQYVSEVKDWPSAGVSFKDITTIMDNGEAYGYATDQIVEYAKEKNIDIVVGPEARGF IIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYNLEYGTNVLTMHKDAIKPGQRVLITDDL LATGGTIEAAIKLVEQLGGIVVGIAFIIELKYLNGIDKIKDYDVMSLISYDE >gi|224999879|gb|ACJC01000121.1| GENE 7 8030 - 10303 1878 757 aa, chain - ## HITS:1 COG:SA1462_1 KEGG:ns NR:ns ## COG: SA1462_1 COG0608 # Protein_GI_number: 15927216 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Staphylococcus aureus N315 # 1 557 1 557 557 804 70.0 0 MIKSKYNWDITQPDTFISESSSDQFKLSPIVKKVLESKNIVDNQEIQNLFKDTNISHDYM LLSDMQKAIDRIKLAIDQNERILVYGDYDADGVTSTTILVSTLRILGAQVGWYIPNRFTE GYGPNELAFKNAYDEGISLIITVDNGIQGHHEISTIQELGVDVIVTDHHEIGETLPDAFA IVHPMHPNFEYPFKYLCGAGVAYKLAQGLIKHPPQHFIALAAIGTIADLVSLTDENRYIV KQGLKILNSHTPSSIKAILNQAGFNDEITEETIGFIIGPRLNAVGRLEDASLAAELLLSD EFEEAEFLAEQVEHFNQERKDIVSKITDEALILAEEQIKQGHLFLLLAKEGWHEGVLGIV ASKIVETYALPTLILNIDKNQNHAKGSARSIEQVSMFDILNDHQQLIDKFGGHHMAAGMT MPIDNIERLHKELNVWMKELTVTTSLEPSIKVDAQLEETEINIKNIKDIFQLRPFGTDFN SPLFMVRDLIVKSTKGIGQDNKHLKLTLGHSGLTALFWNHGHLASELEAGQPIHIIGTLQ INEWNGNQTPQFIIKDIAIDQLQILDYRSKRKNIQFKETESNVAYVIHPKLKKSNSHYYH YGEAIDRPYDKIVFRDLPNTMVEIEQTLEHSQISQLYLVLQHDKSIYFEGIPSKSLFKKC YKALINKKETDLIKEGMLLCEYLNIKPEILTFMLKVFKELEFIYDEKGLIKINPTPNKQD IENSRIYQMRQARMEVEERLLYDDFLNIKEWIISKLT >gi|224999879|gb|ACJC01000121.1| GENE 8 10539 - 12770 2187 743 aa, chain - ## HITS:1 COG:SA1463_1 KEGG:ns NR:ns ## COG: SA1463_1 COG0342 # Protein_GI_number: 15927217 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Staphylococcus aureus N315 # 1 434 21 450 450 677 88.0 0 MGMTYKNVVKNVNLGLDLQGGFEVLFQVDPLNKGDKIDKKALQATSQTLENRVNVLGVSE PKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIRDAEDHVLMSGSDIKQGSAKQEFK QETNQPTVTFKVKSKDKFKKVTEKISKKRDNVMVVWLDFEKGDSYKKEAKKQQEGKKPKF ISAASVDQPINSSSVEISGGFNGKKGVEEAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQ DALDKTMFASIVGIALIYLFMLGFYRLPGLVAIIALTAYIYLTLVAFNFISGVLTLPGLA ALVLGVGMAVDANIIMYERIKDELRIGRTLKQAYSKANKSSFLTIFDSNLTTVIAAAVLF FFGESSVKGFATMLLLGILMIFVTAVFLSRGLLSLLVSSNFFKKQYWLFGVKKKNRHDIN EGKDVHDLKTSYEKLNFVKLAKPLISLSILIVIIGLIIISIFKLNLGIDFSSGTRADIQS KNAITQAQVEKTVKSAGLEPDQIQINGSGNKNATVQFKKDLSREEDNKLSAKVKSEFGDN PQINTVSPLIGQELAKNAVTALILASIGIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIF SLFRIEVDLTFIAAVLTIVGYSINDTIVTFDRVRENLHKVKVITHTDQIDDIVNRSIRQT MTRSINTVLTVVVVVVSILILGAPTIFNFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQF KKTKNNKLIVHKEKKSNDEKILV >gi|224999879|gb|ACJC01000121.1| GENE 9 13178 - 13438 371 86 aa, chain - ## HITS:1 COG:SA1464 KEGG:ns NR:ns ## COG: SA1464 COG1862 # Protein_GI_number: 15927218 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Staphylococcus aureus N315 # 1 86 1 86 86 119 70.0 1e-27 MELTSLIIPILLLVVMYFLLIRPQQKRAKEHRAMINRVEAGQRITTIGGIKGTIKAVDET SVIITVNSNGTEMTFEKPAIKQVDPS >gi|224999879|gb|ACJC01000121.1| GENE 10 13454 - 14593 1056 379 aa, chain - ## HITS:1 COG:SA1465 KEGG:ns NR:ns ## COG: SA1465 COG0343 # Protein_GI_number: 15927219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Staphylococcus aureus N315 # 1 379 1 379 379 777 95.0 0 MPAVTYEHIKTCKQSGARLGIVHTPHGSFETPMFMPVGTKATVKTMSPEELRDIEAKIIL GNTYHLWLQPGNDIIKHAGGLHKFMNWDGPILTDSGGFQVFSLSNLRKISEEGVEFRHHT NGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYEYVKDSIERTTRWAARCLKAHQR PEDQALFGIIQGGEYKDLREQSAKELVSLDFPGYAIGGLSVGEPKPVMYDMVEHTEQFMP KDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIARNGTCMTSNGRLVVKNAKYADDLR PLDEKCDCYTCQHYTRAYIRHLVKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLD FKDEFFEQYGLNVENPKNF >gi|224999879|gb|ACJC01000121.1| GENE 11 14614 - 15639 958 341 aa, chain - ## HITS:1 COG:SA1466 KEGG:ns NR:ns ## COG: SA1466 COG0809 # Protein_GI_number: 15927220 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Staphylococcus aureus N315 # 1 341 1 341 341 601 84.0 1e-172 MNIEDFDYHLPESLIAQTPLKNRDQSRLLVLRKDTGEMTHLHFRDVIHYFEPGDTLVLND TRVMPARLFGLKEETGAKVEMLMLTQIEGNDWEVLLKPAKRIKKGHRLNFGDGKIVAECI EELEQGGRIMRLHYEGILQERLDELGEMPLPPYIKERLDDPDRYQTVYAKESGSAAAPTA GLHFTDDLLNKIEQKGVHIAFITLHVGLGTFRPVSVDNIDDHEMHSEYYQMTQKTADLLN QTKENGKRVISVGTTSTRTLETIRRDHPQFVATSGWTDIFIYPGFEFKAIDGLITNFHLP KSTLVMLVSAFSSKKYILNAYHKAVEMEYRFFSFGDAMLII >gi|224999879|gb|ACJC01000121.1| GENE 12 15641 - 16645 892 334 aa, chain - ## HITS:1 COG:SA1467 KEGG:ns NR:ns ## COG: SA1467 COG2255 # Protein_GI_number: 15927221 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Staphylococcus aureus N315 # 1 333 1 333 334 596 89.0 1e-170 MDKRMVDQEFHNEDTDLELSLRPTQLKQYIGQSSIKSNLEVFIKAAKLRQEPLDHVLLFG PPGLGKTTLSNIIANEMDVNIRTISGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVV EEVLYPAMEDFFLDIIIGKGDEARSIRLDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLE YYNENDLKEIITRTAEVLGTDIDKESALELARRSRGTPRIANRLLKRVRDFQQVNEDDQI YIETTKRALQLLQVDQQGLDYIDHKMMNCIINQYNGGPVGLDTIAVSIGEERVTIEDVYE PFLIQKGFLERTPRGRKATALAFEHFNTTNEKRK >gi|224999879|gb|ACJC01000121.1| GENE 13 16659 - 17261 687 200 aa, chain - ## HITS:1 COG:SA1468 KEGG:ns NR:ns ## COG: SA1468 COG0632 # Protein_GI_number: 15927222 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Staphylococcus aureus N315 # 1 200 1 200 200 286 77.0 1e-77 MYAYIKGTLSQLFPTHVVVETCGIGYEIQTPNSYRFQKYLEKEVQIYTSLIVREDAQLLY GFINEEEKEMFLSLIKVTGIGPKSALAILASSTPYEVKLAIENENDAYLTQFPGIGKKTA RQIVLDLKGKVTITEENSDDLLQTQVNGNEQNQIISEALLALQALGYSKRELSKVEKSLN KHNVNSVDEAVKIGLQTLVS >gi|224999879|gb|ACJC01000121.1| GENE 14 17274 - 17729 282 151 aa, chain - ## HITS:1 COG:SA1469 KEGG:ns NR:ns ## COG: SA1469 COG4492 # Protein_GI_number: 15927223 # Func_class: R General function prediction only # Function: ACT domain-containing protein # Organism: Staphylococcus aureus N315 # 1 151 2 152 152 201 74.0 3e-52 MDNKDNRKFYLIREDVLPESVIKTLKVKDALKNNSNLSIYDAVKQFNLSRSAFYKYRETI FPVDEKILDQREFTLILYVNDIVGMLAQVLNAISQLKLSVLTIHQSVPIEDKATITLSLN ARNSNLSIDEVIESLREINHVTKVDLISMTM >gi|224999879|gb|ACJC01000121.1| GENE 15 17741 - 19033 1517 430 aa, chain - ## HITS:1 COG:SA1470 KEGG:ns NR:ns ## COG: SA1470 COG0536 # Protein_GI_number: 15927224 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Staphylococcus aureus N315 # 1 430 1 430 430 735 91.0 0 MFVDQVKISLKAGDGGNGITAYRREKYVPFGGPAGGDGGKGASVIFEVDEGLRTLLDFRY QRHFKAKKGENGQSSNMHGKNAEDLVLKVPPGTIIKSVESEEVLADLVEDGQRAIVARGG RGGRGNSRFATPRNPAPDFSENGEPGEELEVTLELKLLADVGLVGFPSVGKSTLLSIVSK AKPKIGAYHFTTIKPNLGVVSTPDHRSFVMADLPGLIEGASDGVGLGHQFLRHVERTKVI VHMIDMSGSEGRDPLDDYKIINQELINYKQRLEDRPQIIVANKMDLPDSQGNLSLFKEQL DNDVTVVPVSTITRDNIDQLLYQIADKLEEVKDVDFSVEEDENLGVNRVLYKHTPSADKF TISRDDDGAYVVSGNAIERMFKMTDFNSDPAVRRFARQMRSMGIDDALRERGCSNGDIVR ILGGEFEFVE >gi|224999879|gb|ACJC01000121.1| GENE 16 19179 - 19463 475 94 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27468246|ref|NP_764883.1| 50S ribosomal protein L27 [Staphylococcus epidermidis ATCC 12228] # 1 94 1 94 94 187 100 7e-47 MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQYVSGGSILYRQRGTKIYPGENVG RGGDDTLFAKIDGVVKFERKGRDKKQVSVYAVAE >gi|224999879|gb|ACJC01000121.1| GENE 17 19475 - 19795 202 106 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|212638539|ref|YP_002315059.1| Predicted ribosomal protein [Anoxybacillus flavithermus WK1] # 1 106 1 109 111 82 40 3e-15 MITVDITVNDEGKVTDVVMDGHANHGEYGHDIVCAGASAVLFGSVNAIMGLTSEKPDINY EDDGGYFHIRSVDTNNKEAQLILQAMLVSLQTIEEEYNENIKLNYK >gi|224999879|gb|ACJC01000121.1| GENE 18 19800 - 20108 518 102 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27468248|ref|NP_764885.1| 50S ribosomal protein L21 [Staphylococcus epidermidis ATCC 12228] # 1 102 1 102 102 204 100 7e-52 MFAIIETGGKQIKVEEGQEIYVEKLNANEGDSFTFDKVLFVGGDSVKVGAPTVEGASVTA TVNKQGRGKKITVFTYKRRKDSKRKKGHRQPYTKLTIDKINA >gi|224999879|gb|ACJC01000121.1| GENE 19 20230 - 20751 370 173 aa, chain - ## HITS:1 COG:SA1474 KEGG:ns NR:ns ## COG: SA1474 COG2891 # Protein_GI_number: 15927228 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Staphylococcus aureus N315 # 1 172 1 172 176 144 67.0 9e-35 MRTFYYFLIGILLFYIDTIIGLTIPMHFGKIDIIFVPHLTIMYILIMTVYRGFGVAMSLA FFFGIVTDLYFGSIYGLYMFGYIILVVIVDKFFKIFYRDYSVLFFIILLSTVFLEIYVAM IYGVIGFIEFNLIEFVLLRLIPTLIINFLLLIMLFPIIIKFTKKIKNTIDSKA >gi|224999879|gb|ACJC01000121.1| GENE 20 20751 - 21542 944 263 aa, chain - ## HITS:1 COG:SA1475 KEGG:ns NR:ns ## COG: SA1475 COG1792 # Protein_GI_number: 15927229 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Staphylococcus aureus N315 # 1 261 17 277 280 397 79.0 1e-110 MIIFIALIGLSIRSQTQSPPEQYVGDSVSFGQRVISYPIQFVTGSIGNLFEKGSSKKDKN KIKQLEAKNEELESENKKYKKELDIKDLSKYEPISTTVIARNPDQWMNTILIDKGSKAGI KNNMAVMTSEGLVGRVTKVNQFSSQVDLISTHTRAGKLSVNIHHGTKNIFGLIDRYDNKN EELIISDINNKDSVKKGDKVVTSGLADQLPSGLYIGEVTKVENDQYGLAKQVRVKTGADM TDLTHVYVAKRDVSTIPNEGSDN >gi|224999879|gb|ACJC01000121.1| GENE 21 21982 - 22122 132 46 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MAEQSKEKQANEQAKAQNLFARWRKEETLYSEDEKKEKSSNKKDKE >gi|224999879|gb|ACJC01000121.1| GENE 22 22206 - 22691 516 161 aa, chain - ## HITS:1 COG:no KEGG:SERP1215 NR:ns ## KEGG: SERP1215 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 161 1 161 161 251 97.0 7e-66 MRYIFSVIKNIIAVIAIILIIYIALQHAPFLKNQEWNPLNDMNNHHQNITQKASQKNNTL YSQPSNDKSYILKDNDIINNVPASQIKTVFNMIDKAEFMSVSGLERMGFNDEYLAGQQGD EFIIYKFGDDYIRVYNTEFEMNEDLNQLKQPINLKPIEAYQ >gi|224999879|gb|ACJC01000121.1| GENE 23 22855 - 23034 234 59 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSILTIILIVLLVILLFKVGLSILRFLISAGIVLLCIYLGYQGVLWLFEHFQNFSGFIQ >gi|224999879|gb|ACJC01000121.1| GENE 24 23098 - 23763 720 221 aa, chain - ## HITS:1 COG:SA1485 KEGG:ns NR:ns ## COG: SA1485 COG2003 # Protein_GI_number: 15927239 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Staphylococcus aureus N315 # 1 175 6 180 184 233 68.0 2e-61 MALHEKPRERLITYGAKTLSNVELLAILLNTGRKGFSSIDIANELLKQQSTIRDLKKMSI NDLLKIKGIGLYKAVILQAAFELGERINSTSTLDKVQITHPSDVASLMMSTMKDLEQEHF VVLLLNSKNIVTKQAWVYKGTLNSSIIHPREVFNIAIRESSNSIIVVHNHPSGDVTPSKE DITTTYRLKECGDILGINLLDHIIIGDNKFTSLVEAGYFDE >gi|224999879|gb|ACJC01000121.1| GENE 25 23775 - 24485 97 236 aa, chain - ## HITS:1 COG:SA1486 KEGG:ns NR:ns ## COG: SA1486 COG1989 # Protein_GI_number: 15927240 # Func_class: N Cell motility; O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, prepilin signal peptidase PulO and related peptidases # Organism: Staphylococcus aureus N315 # 1 236 2 235 235 132 41.0 8e-31 MLLLAYTCSIIFSFLYQFCNQNIVKLQYLYSRSHCDFCHTIIKPLDLLPIISFLKLRGQS RCCNQPLQRLYLIGEFVSFSAIFFFYPTHFNIHFILFLTTFLFLLTMCLYDIHSMHIDLR LLFVYTIVSVFVTQTYFGNFVMIFLISHVIYLFASKFIGYGDILLFNILGLIFPLNFFFF IVVFTFIIGGIFAIILKFFSFKDIKYLPLIPFIFISFVVTSLVYRHILFLLGGEFY >gi|224999879|gb|ACJC01000121.1| GENE 26 24669 - 25934 1407 421 aa, chain - ## HITS:1 COG:SA1487 KEGG:ns NR:ns ## COG: SA1487 COG0285 # Protein_GI_number: 15927241 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Staphylococcus aureus N315 # 1 420 1 420 423 659 77.0 0 MNYLDSLYWIHERSKFGIKPGVKRMEWMLEQLNNPQHKIRGIHVGGTNGKGSTVAYLRTA LIENGYSVGTFTSPFIESFNERISLNGVPIMNDELVQLVEQVKPVSEALEIETDLGGATE FEIITTMMFLYFGEINPVDFVVIEAGLGIKNDSTNVFKPVLSILTSIGLDHTDILGTTYL DIAKDKAAIIKPHIPIVYAVKNDDALKYVRDYALEQNAKPIELDREITVVSQDDEFTYRY KDYELETIILNMLGEHQKENAALAITALIELNERQIIELDFNKMIDGIESVNWTGRIEQV KEQPLMVVDGAHNNESVDALVDTIRHYYGRDKIDILFSAIKGKPIHSMINKLNDIASKFY IADFEFPKALAKEEIAEELKLDNLHLIDDYVDFIENYEGDGLIITGSLYFISEVKAKINF N >gi|224999879|gb|ACJC01000121.1| GENE 27 25945 - 28575 2807 876 aa, chain - ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 876 1 876 876 1599 89.0 0 MEMKPKYDPREVEKGRYEEWVSNGYFKPSEDKSKEAYTIVIPPPNVTGKLHLGHAWDTTL QDIITRMKRMQGYDTLYLPGMDHAGIATQAKVEAKLNEQGISRHDLGREKFLQQAWDWKE EYATFIRQQWAKLGLGLDYSRERFTLDDGLSKAVRKVFVDLYNKGIIYRGERIINWDPKA RTALSDIEVIHEDVQGAFYHFKYPYADGNGYIEIATTRPETMLGDTAIVVNPNDERYKGV IGKTVILPIVGRELPILADEYVDIEFGSGAMKVTPAHDPNDFEIGQRHQLENIIVMDEYG KMNEKADKYKGMDRFDCRNQLVKDLKEQDLVIKIEEHTHSVGHSERSGAIVEPYLSTQWF VKMKPLAQRALDNQNTKDRIDFFPGRFENTFNRWMEEIRDWTISRQLWWGHQIPAWYHKD TGEVFVGEEAPEDIENWIQDEDVLDTWFSSALWPFSTLGWPDTNADDFKRYYPTNALVTG YDIIFFWVARMIFQGLEFTDRRPFNDVLLHGLVRAEDGRKMSKSLGNGVDPMDVIDEYGA DSLRYFLATGSSPGHDLRYSTEKVESVWNFINKIWNAARFSLMNIGEGFKVEDIDLSGNL SLADQWILTRLNETISTVTELSDKYEFGEVGRALYNFIWDEFCDWYIEMSKIPMNGEDES QKQTTRSVLSYVLDKIMKMLHPFMPFVTETIWQSLPHHGETIVKANWPTVDQALIFNESK QTMEQLVEIIKSVRQSRVEVNTPLSKAIPILIQTKDEKIKQTLMDNISYLHKFCNPSQLT IDTEIEIPEKAMTSVVVAGKVVLPLEGLIDMDKEIARLEKELDKLQGELDRVDKKLSNEN FVNKAPEKIINEEKEKQQHYQEKYNGVKSRIEQLKA >gi|224999879|gb|ACJC01000121.1| GENE 28 28878 - 29477 289 199 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 14 192 1 179 185 115 31 3e-25 MDIKISQCIGDEFMNECAFNTTDPTYLEYHDYYWGQPIYDGKELFKLMALESQHAGLSWL TILKKKESYEQAFYNFEPQFIAQMTEKDIDHLMKFPNIIHNRKKLEAIVSQAKGYLKIEK DYGSFSKFLWSYVNHQPINMGYKKPRDRKKVDQRATQLSKDLKAYGFKFLGPVTVFSFLE AAGLYDSHLEGCPFKPNHG >gi|224999879|gb|ACJC01000121.1| GENE 29 29646 - 30644 846 332 aa, chain - ## HITS:1 COG:SA1490 KEGG:ns NR:ns ## COG: SA1490 COG3180 # Protein_GI_number: 15927244 # Func_class: R General function prediction only # Function: Putative ammonia monooxygenase # Organism: Staphylococcus aureus N315 # 3 332 26 355 357 341 67.0 1e-93 MLHVILPFMFGPILAALLCVKVLKLKIRWPFWLSQIGLILLGVQIGSTFTQQVIKDISKN WSTIVFVTILLILLALIIAFFFKKIAQVNLETAILSVIPGALSQMLVMAEENKKANILVV SLTQTSRVIFVVILVPLISYFFQDNHHEMNHPTMEVPALSQTLNIWQIIILFSMVGIIYI GMSKINFPTKQLLAPIIVLIIWNMTTHLTFSLDHWLLATAQLIYMIRIGLQIANLMSDLK GRIAIAIAFQNIMLIVTTFIMIIGIHLITNESINELFLGAAPGGMSQIVLVAMATGADVA MISSYHIFRIFFILFVIAPLIGYFINIRLNEK Prediction of potential genes in microbial genomes Time: Sun May 29 07:48:26 2011 Seq name: gi|224999878|gb|ACJC01000122.1| Staphylococcus epidermidis W23144 contig00162, whole genome shotgun sequence Length of sequence - 107007 bp Number of predicted genes - 83, with homology - 83 Number of transcription units - 48, operones - 21 average op.length - 2.7 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 84 - 127 6.0 1 1 Op 1 7/0.000 - CDS 159 - 1442 1600 ## COG0001 Glutamate-1-semialdehyde aminotransferase 2 1 Op 2 6/0.053 - CDS 1466 - 2440 1072 ## COG0113 Delta-aminolevulinic acid dehydratase 3 1 Op 3 23/0.000 - CDS 2430 - 3110 542 ## COG1587 Uroporphyrinogen-III synthase 4 1 Op 4 3/0.211 - CDS 3144 - 4070 1089 ## COG0181 Porphobilinogen deaminase 5 1 Op 5 3/0.211 - CDS 4122 - 4613 436 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component - Prom 4719 - 4778 10.0 - Term 4765 - 4805 5.1 6 2 Op 1 . - CDS 4956 - 6302 1624 ## COG0373 Glutamyl-tRNA reductase - Prom 6383 - 6442 8.3 7 2 Op 2 . - CDS 6472 - 7059 560 ## COG0218 Predicted GTPase - Prom 7086 - 7145 9.2 - Term 7117 - 7154 5.1 8 3 Tu 1 4/0.105 - CDS 7171 - 8433 1559 ## COG1219 ATP-dependent protease Clp, ATPase subunit - Prom 8469 - 8528 6.2 - Term 8615 - 8649 -0.5 9 4 Tu 1 . - CDS 8720 - 10021 1865 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) - Prom 10061 - 10120 7.6 10 5 Op 1 . - CDS 10182 - 11105 734 ## SERP1240 hypothetical protein 11 5 Op 2 1/0.842 - CDS 11122 - 11733 647 ## COG4112 Predicted phosphoesterase (MutT family) - Prom 11826 - 11885 8.2 - Term 12099 - 12141 9.1 12 6 Op 1 46/0.000 - CDS 12153 - 12509 590 ## PROTEIN SUPPORTED gi|27468271|ref|NP_764908.1| 50S ribosomal protein L20 13 6 Op 2 36/0.000 - CDS 12559 - 12759 328 ## PROTEIN SUPPORTED gi|27468272|ref|NP_764909.1| 50S ribosomal protein L35 14 6 Op 3 1/0.842 - CDS 12787 - 13314 418 ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 - Prom 13351 - 13410 5.3 - Term 13338 - 13377 8.4 15 7 Tu 1 . - CDS 13521 - 15023 1323 ## COG0833 Amino acid transporters - Prom 15137 - 15196 5.7 - Term 15243 - 15286 -0.2 16 8 Tu 1 . - CDS 15452 - 17389 2503 ## COG0441 Threonyl-tRNA synthetase - Prom 17505 - 17564 7.6 - Term 17448 - 17493 8.3 17 9 Op 1 8/0.000 - CDS 17743 - 18663 800 ## COG1484 DNA replication protein 18 9 Op 2 6/0.053 - CDS 18663 - 20033 1210 ## COG3611 Replication initiation/membrane attachment protein 19 9 Op 3 1/0.842 - CDS 20034 - 20504 459 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains - Prom 20688 - 20747 8.2 - Term 20958 - 21002 9.4 20 10 Tu 1 . - CDS 21023 - 22048 1090 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase - Prom 22082 - 22141 8.9 21 11 Op 1 . - CDS 22151 - 22357 140 ## COG3666 Transposase and inactivated derivatives 22 11 Op 2 . - CDS 22389 - 22538 101 ## SE0076 putative transposase - Term 22730 - 22778 13.1 23 12 Op 1 4/0.105 - CDS 22914 - 23525 782 ## COG0237 Dephospho-CoA kinase 24 12 Op 2 4/0.105 - CDS 23541 - 24413 755 ## COG0266 Formamidopyrimidine-DNA glycosylase 25 12 Op 3 1/0.842 - CDS 24429 - 27059 2516 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains - Prom 27161 - 27220 6.8 - Term 27314 - 27361 5.4 26 13 Op 1 40/0.000 - CDS 27368 - 29065 1322 ## COG0642 Signal transduction histidine kinase 27 13 Op 2 1/0.842 - CDS 29065 - 29775 753 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Term 30121 - 30167 7.1 28 14 Op 1 4/0.105 - CDS 30189 - 31457 1667 ## COG0538 Isocitrate dehydrogenases 29 14 Op 2 . - CDS 31500 - 32621 1393 ## COG0372 Citrate synthase - Prom 32663 - 32722 8.7 + Prom 32866 - 32925 8.2 30 15 Tu 1 . + CDS 32969 - 34327 1341 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 34336 - 34382 9.2 - Term 34653 - 34723 16.4 31 16 Op 1 12/0.000 - CDS 34777 - 36534 2194 ## COG0469 Pyruvate kinase 32 16 Op 2 5/0.053 - CDS 36558 - 37526 1260 ## COG0205 6-phosphofructokinase - Prom 37639 - 37698 5.8 - Term 37653 - 37693 -0.9 33 17 Op 1 10/0.000 - CDS 37703 - 38647 1168 ## COG0825 Acetyl-CoA carboxylase alpha subunit 34 17 Op 2 2/0.421 - CDS 38647 - 39504 696 ## COG0777 Acetyl-CoA carboxylase beta subunit - Prom 39529 - 39588 3.6 35 17 Op 3 3/0.211 - CDS 39602 - 40831 1305 ## COG0281 Malic enzyme - Prom 41055 - 41114 10.8 - Term 41062 - 41106 1.8 36 18 Op 1 2/0.421 - CDS 41135 - 44332 2755 ## COG0587 DNA polymerase III, alpha subunit 37 18 Op 2 3/0.211 - CDS 44356 - 45294 598 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 38 18 Op 3 . - CDS 45329 - 46627 1281 ## COG4109 Predicted transcriptional regulator containing CBS domains - Prom 46659 - 46718 8.1 + Prom 46661 - 46720 4.7 39 19 Tu 1 . + CDS 46825 - 47238 602 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 47350 - 47399 10.4 - Term 47344 - 47382 6.1 40 20 Tu 1 . - CDS 47500 - 48189 764 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold - Prom 48217 - 48276 8.2 + Prom 48276 - 48335 8.8 41 21 Tu 1 . + CDS 48361 - 49416 1082 ## COG0006 Xaa-Pro aminopeptidase + Term 49458 - 49502 -0.8 - Term 49419 - 49465 10.1 42 22 Tu 1 . - CDS 49479 - 50594 1428 ## COG0686 Alanine dehydrogenase - Prom 50668 - 50727 8.9 + Prom 50658 - 50717 8.1 43 23 Tu 1 . + CDS 50743 - 51243 725 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins + Term 51269 - 51317 11.5 - Term 51249 - 51311 14.1 44 24 Op 1 7/0.000 - CDS 51381 - 52571 1462 ## COG0282 Acetate kinase - Prom 52618 - 52677 5.0 45 24 Op 2 3/0.211 - CDS 52723 - 53670 1147 ## COG0827 Adenine-specific DNA methylase - Prom 53732 - 53791 5.3 46 25 Tu 1 . - CDS 53799 - 54293 536 ## COG2077 Peroxiredoxin - Prom 54320 - 54379 8.8 - Term 54432 - 54501 2.2 47 26 Op 1 1/0.842 - CDS 54533 - 55297 738 ## COG0730 Predicted permeases 48 26 Op 2 7/0.000 - CDS 55337 - 56560 1362 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 49 26 Op 3 3/0.211 - CDS 56560 - 57699 792 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes - Term 57850 - 57888 4.1 50 27 Tu 1 . - CDS 58029 - 59723 2075 ## COG4477 Negative regulator of septation ring formation - Prom 59829 - 59888 8.6 + Prom 59774 - 59833 7.5 51 28 Tu 1 . + CDS 59858 - 60328 315 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 + Prom 60465 - 60524 6.3 52 29 Tu 1 . + CDS 60549 - 61151 1032 ## PROTEIN SUPPORTED gi|242242984|ref|ZP_04797429.1| 30S ribosomal protein S4 + Term 61169 - 61210 5.0 - Term 61243 - 61313 7.2 53 30 Tu 1 . - CDS 61425 - 62171 780 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Prom 62162 - 62221 6.1 54 31 Tu 1 . + CDS 62249 - 62689 521 ## COG1764 Predicted redox protein, regulator of disulfide bond formation + Term 62696 - 62757 5.4 + Prom 62733 - 62792 7.5 55 32 Op 1 5/0.053 + CDS 62816 - 63979 1141 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase 56 32 Op 2 . + CDS 63969 - 65564 1639 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Term 65594 - 65654 8.1 57 33 Op 1 1/0.842 - CDS 65644 - 66768 1019 ## COG0546 Predicted phosphatases - Prom 66800 - 66859 6.4 - Term 66817 - 66854 1.0 58 33 Op 2 1/0.842 - CDS 66864 - 68336 1384 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 68458 - 68517 7.8 - Term 68468 - 68521 8.7 59 34 Tu 1 . - CDS 68546 - 69169 729 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase - Prom 69278 - 69337 5.7 60 35 Tu 1 . + CDS 69449 - 70687 1320 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain + Term 70744 - 70801 9.1 - Term 70732 - 70789 8.7 61 36 Tu 1 . - CDS 70878 - 72143 731 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 - Prom 72163 - 72222 5.9 + Prom 72454 - 72513 7.1 62 37 Tu 1 . + CDS 72534 - 73439 533 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) - Term 73463 - 73516 7.2 63 38 Tu 1 . - CDS 73529 - 75196 1789 ## COG2759 Formyltetrahydrofolate synthetase - Prom 75236 - 75295 6.5 - Term 75532 - 75578 9.1 64 39 Tu 1 . - CDS 75614 - 76603 1110 ## COG1609 Transcriptional regulators - Prom 76627 - 76686 7.6 - Term 76768 - 76826 11.5 65 40 Tu 1 . - CDS 76859 - 77950 1279 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase - Prom 78021 - 78080 11.1 - Term 78138 - 78191 8.1 66 41 Op 1 . - CDS 78385 - 79608 1470 ## SE1411 smooth muscle caldesmon - Term 79617 - 79663 8.1 67 41 Op 2 2/0.421 - CDS 79686 - 80177 598 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain 68 41 Op 3 3/0.211 - CDS 80252 - 81565 1723 ## COG0773 UDP-N-acetylmuramate-alanine ligase 69 41 Op 4 3/0.211 - CDS 81586 - 85095 3716 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 70 41 Op 5 4/0.105 - CDS 85116 - 85712 612 ## COG0073 EMAP domain 71 41 Op 6 4/0.105 - CDS 85735 - 86589 927 ## COG4848 Uncharacterized protein conserved in bacteria - Prom 86615 - 86674 6.4 72 42 Op 1 1/0.842 - CDS 86727 - 87038 470 ## COG0526 Thiol-disulfide isomerase and thioredoxins 73 42 Op 2 . - CDS 87044 - 88129 1255 ## COG1363 Cellulase M and related proteins - Prom 88184 - 88243 9.5 + Prom 88128 - 88187 8.2 74 43 Tu 1 . + CDS 88214 - 88528 251 ## COG5584 Predicted small secreted protein + Term 88576 - 88624 10.0 - Term 88612 - 88660 5.1 75 44 Op 1 5/0.053 - CDS 88688 - 89335 762 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase 76 44 Op 2 1/0.842 - CDS 89349 - 90140 662 ## COG0510 Predicted choline kinase involved in LPS biosynthesis - Prom 90333 - 90392 9.2 - Term 90371 - 90418 -0.5 77 45 Op 1 2/0.421 - CDS 90527 - 91375 949 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 78 45 Op 2 . - CDS 91379 - 92788 1495 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 92895 - 92954 8.8 - Term 93044 - 93081 -0.9 79 46 Op 1 . - CDS 93091 - 93519 717 ## SERP1311 hypothetical protein 80 46 Op 2 2/0.421 - CDS 93537 - 94229 531 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 81 46 Op 3 . - CDS 94226 - 95887 1460 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid - Prom 96074 - 96133 10.1 + Prom 95971 - 96030 8.3 82 47 Tu 1 . + CDS 96159 - 97421 1193 ## COG2081 Predicted flavoproteins + Term 97451 - 97502 10.1 - Term 97784 - 97842 8.2 83 48 Tu 1 . - CDS 97889 - 107005 11141 ## SE1429 FmtB protein Predicted protein(s) >gi|224999878|gb|ACJC01000122.1| GENE 1 159 - 1442 1600 427 aa, chain - ## HITS:1 COG:SA1491 KEGG:ns NR:ns ## COG: SA1491 COG0001 # Protein_GI_number: 15927246 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Staphylococcus aureus N315 # 1 427 1 427 428 791 91.0 0 MSFEKSIKAMEHAEKLMPGGVNSPVRAFKSVDTPAIFMDHGEGSKIYDIDGNEYIDYVLS WGPLILGHKNQQVISKLHEAVDKGTSFGASTIQENKLAELVIDRVPSIEKVRMVSSGTEA TLDTLRLARGYTGRNKIIKFEGCYHGHSDSLLIKAGSGVATLGLPDSPGVPEGIAKNTIT VPYNDLDSLKLAFEKYGDDIAGVIVEPVAGNMGVVPPVNGFLQGLRDITTEYGALLIFDE VMTGFRVGYNCAQGYFGVTPDLTCLGKVIGGGLPVGAFGGKKEIMDYIAPVGTIYQAGTL SGNPLAMTSGYETLSQLTPESYEYFNSLGDILEKGLKEVFAKHNVPITVNRAGSMIGYFL NEGPVTNFDEANKSDLKLFSNMYREMAKEGVFLPPSQFEGTFLSTAHTKDDIEKTIQAFD NALSRIV >gi|224999878|gb|ACJC01000122.1| GENE 2 1466 - 2440 1072 324 aa, chain - ## HITS:1 COG:SA1492 KEGG:ns NR:ns ## COG: SA1492 COG0113 # Protein_GI_number: 15927247 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Staphylococcus aureus N315 # 1 324 1 324 324 602 90.0 1e-172 MKFDRHRRLRSSKTMRDLVRETHVRKEDLIYPIFVVEQDDIKSEIKSLPGVYQISLNLLH EEIKEAYDLGIRAIMFFGVPNEKDDIGSGAYDHNGVVQEATRISKNLYKDLLIVADTCLC EYTDHGHCGVIDDHTHDVDNDKSLPLLVKTAISQVEAGADIIAPSNMMDGFVAEIREGLD QAGYQNIPIMSYGIKYASSFFGPFRDAADSAPSFGDRKTYQMDPANRLEALRELESDLKE GCDMMIVKPSLSYLDIIRDVKNNTNVPVVAYNVSGEYSMTKAAALNGWIDEEKIVMEQMI SMKRAGADLIITYFAKDICRYLDK >gi|224999878|gb|ACJC01000122.1| GENE 3 2430 - 3110 542 226 aa, chain - ## HITS:1 COG:SA1493 KEGG:ns NR:ns ## COG: SA1493 COG1587 # Protein_GI_number: 15927248 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Staphylococcus aureus N315 # 1 221 1 221 222 255 63.0 5e-68 MKPVIVMTQTNEVHSHLVDIVHKPFIQLKQLHFNEKLLDHSYDWLIFSSKNAVKYFYPYL KNVKVKKVAVIGDKTAQYCNELGISVDFVPRDFSQEGFLDEFKIREQHLLLPSSEKARPK LVQQLSKYNEIVKIDLYRPVPNFKNISQVKALVRKHQIDAVTFSSSSAVEFYFKEGNVPE FDHYFAIGKQTARTILKFNASVKVANKQTLDSLIDKIIESREQNEI >gi|224999878|gb|ACJC01000122.1| GENE 4 3144 - 4070 1089 308 aa, chain - ## HITS:1 COG:SA1494 KEGG:ns NR:ns ## COG: SA1494 COG0181 # Protein_GI_number: 15927249 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Staphylococcus aureus N315 # 1 306 1 306 308 507 81.0 1e-143 MRKLIVGSRRSKLALTQSQQFIDKLKFIDPSLDIEIKEIVTKGDKIVDKQLSKVGGKGLF VKEIQNELFNKEIDMAIHSLKDVPSIIPDGLTLGCIPDREIPFDAYIAKNHIPLEELSEG SIVGTSSLRRGAQILSKYPHLKIKWIRGNIDTRLKKLETEDYDAIILAAAGLKRMGWSDN IVTTYLDRDVLLPAIGQGALGIECRSDDKELLDLLAKVHNHDVAQCVTAERTFLSEMDGS CQVPIGGYATIVQDNQIEFTGLIMSPDGKERYEHTTLGSDPVQLGIEVSQVLKKQGAYDI IKKLNEAE >gi|224999878|gb|ACJC01000122.1| GENE 5 4122 - 4613 436 163 aa, chain - ## HITS:1 COG:SA1495 KEGG:ns NR:ns ## COG: SA1495 COG0755 # Protein_GI_number: 15927250 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Staphylococcus aureus N315 # 1 162 108 269 271 201 74.0 6e-52 MTLNTFQPEHYQTQIQQVAVINELLLIHIALAVLSYAFFAIAFVNSLLYIIQYRNLKEKN FDQNYFRIGSVATLETIVFYSTLVAWIILILSTILGAQWGIFAVGKRIFIDPKVIFSSII TLLYGVYILIRIKKWISQRNLIYFNIILFCLCMINLFFLTHFR >gi|224999878|gb|ACJC01000122.1| GENE 6 4956 - 6302 1624 448 aa, chain - ## HITS:1 COG:SA1496 KEGG:ns NR:ns ## COG: SA1496 COG0373 # Protein_GI_number: 15927251 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Staphylococcus aureus N315 # 1 448 1 448 448 679 84.0 0 MHFVAISINHRTADVTLREQVAFRDDALRLAHEDLYETKAILENVILSTCNRTEVYAIVD QVHTGRYYIQRFLARSFGFEVDDIKDMSEVKVGDDAVEHLLRVTSGLDSIVLGETQILGQ MRDAFFLAQNAGTTGTIFNHLFKQAITFAKKAHSETDIADNAVSVSYAAVELAKKVFGKL KSKHAVVIGAGEMGELSLLNLLGSGISSVTIVNRTLSKAKILAEKHNVSYDSLSALPSLL ETTDIVISSTSAKDYIITNSMVKTISETRKLDSLVLIDIAVPRDIEPGIDAITNIFNYDV DDLKDLVDANLRERQLAAETIAAQIPEEIDSHNEWVNMLGVVPVIRALREKAMNIQAETM ESIDRKLPDLSERERKVISKHTKSIINQMLKDPIKQAKELSTDKKSNEKLELFQNIFDIE AEDPREKAKLEKESRAKEILAHRIFSFE >gi|224999878|gb|ACJC01000122.1| GENE 7 6472 - 7059 560 195 aa, chain - ## HITS:1 COG:SA1497 KEGG:ns NR:ns ## COG: SA1497 COG0218 # Protein_GI_number: 15927252 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Staphylococcus aureus N315 # 1 195 1 195 196 317 85.0 7e-87 MNINPNNINLIISAVKKAQYPDTGLTEVALSGRSNVGKSTFINSMIGRKNMARTSQQPGK TQTLNFYNIDEQLIFVDVPGYGYAKVSKVQREKFGKMIEEYITQRENLKLVIQLVDLRHQ PTEDDVLMYNYLKHFDIPTLVICTKEDKIAKGKVQKHIKRIKDKLELEPGDNIISYSSIK NSKQQEIWNFIETYI >gi|224999878|gb|ACJC01000122.1| GENE 8 7171 - 8433 1559 420 aa, chain - ## HITS:1 COG:SA1498 KEGG:ns NR:ns ## COG: SA1498 COG1219 # Protein_GI_number: 15927253 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease Clp, ATPase subunit # Organism: Staphylococcus aureus N315 # 1 420 1 420 420 732 94.0 0 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEGFTE LPTPKEIMDHLNEYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTG SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQIDTTN ILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLEQIRPEDLQSYGLIPEFIG RVPIVANLETLDVAALKNILTQPKNALVKQYTKMLELDNVELEFSEEALSAISEKAIERK TGARGLRSIIEEALIDIMYDVPSSENVSKVVITEQTINEEIEPELYDDEGNLINKNKTSA >gi|224999878|gb|ACJC01000122.1| GENE 9 8720 - 10021 1865 433 aa, chain - ## HITS:1 COG:SA1499 KEGG:ns NR:ns ## COG: SA1499 COG0544 # Protein_GI_number: 15927254 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Staphylococcus aureus N315 # 1 433 1 433 433 615 89.0 1e-176 MTATWEKKEGNEGVLTVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV EALYQDAVDILLPEAYGEAIEETEISPVAQPEVNVTQIEKGKDFIFEATVTVEPEVKLGD YKGLEIEKQETELSDEELQESIDHSLSHLAEMVVKEDGAVENGDTVNIDFSGSVDGEEFD GGQAEGYDLEIGSGSFIPGFEEQIEGMKTGDEKDVVVTFPEEYHAEELAGKEATFKTKVN EIKFKDVPELNDEIANELDSDAENVDEYKENLRKRLSEQKATEAENTEKEEAINKATENA SIDIPEAMINTELDRMIQEFGQRIQQQGLDLQTYYQISGQNEEQLRDQMKDDAEQRVKTN LTLTAIADEENIEVSDEDIDKELEKMSEQFNISVEDIKSTLGNTDIVKNDVRIQKVIDLL RDNAKYVEATKED >gi|224999878|gb|ACJC01000122.1| GENE 10 10182 - 11105 734 307 aa, chain - ## HITS:1 COG:no KEGG:SERP1240 NR:ns ## KEGG: SERP1240 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 307 1 307 307 549 95.0 1e-155 MADIIPFPQSKSKVIKQINDAERNADFEKMYHLFNVYEQHFDLNEDIALKKCRMLLKLNA YLELREEAIILLKRGFNCYDELMIYYIKSLNGLGQFYEAVEVINQIIDEVKNHKTRMELF PLKEYAISRLDEDREALSSSLSDFGSLNIREQTSLLLQLIDNGHYNFKESVANILISIEL PKNLVSLMLEYLRFAEYSHTITIHKYGETINVNPNHLSGIEHTTIKDKVIPVVMNRLEDG ALHILKEAQHMMNNHSILMYPIDIESLYTIDDWIDAYDVYFKQLIGIDINGCNNDTLKFI KSLDNEM >gi|224999878|gb|ACJC01000122.1| GENE 11 11122 - 11733 647 203 aa, chain - ## HITS:1 COG:SA1501 KEGG:ns NR:ns ## COG: SA1501 COG4112 # Protein_GI_number: 15927256 # Func_class: R General function prediction only # Function: Predicted phosphoesterase (MutT family) # Organism: Staphylococcus aureus N315 # 1 202 1 202 202 313 82.0 1e-85 MSKFDEQIIVVNRDILFNKDKNAFNGFLHKNNFKGKEIFSALSKYEVKRRGDMEDDPSFK QLISYCLLENEKGEILVYERLSGGGEERLHGQSSIGVGGHMNDVTGADSINEVLRVNAQR ELEEEVGLSNNKSQNMEYLGFINDDDNDVGKVHMGVVFKITVQSNDVEAKETDTLKIKWI EQGDIHSYEDFETWSALILQDIS >gi|224999878|gb|ACJC01000122.1| GENE 12 12153 - 12509 590 118 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27468271|ref|NP_764908.1| 50S ribosomal protein L20 [Staphylococcus epidermidis ATCC 12228] # 1 118 1 118 118 231 100 9e-60 MPRVKGGTVTRARRKKTIKLAKGYFGSKHTLYKVAKQQVMKSGQYAFRDRRQRKRDFRKL WITRINAAARQHDISYSRLMNGLKKAEIDINRKMLSEIAISDDKAFAELVSKAKEALK >gi|224999878|gb|ACJC01000122.1| GENE 13 12559 - 12759 328 66 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27468272|ref|NP_764909.1| 50S ribosomal protein L35 [Staphylococcus epidermidis ATCC 12228] # 1 66 1 66 66 130 100 2e-29 MPKMKTHRGAAKRVKRTGSGQLKRSRAFTSHLFANKNTKQKRQLRKAKLVSKSDMKRVKQ LLAYKK >gi|224999878|gb|ACJC01000122.1| GENE 14 12787 - 13314 418 175 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 18 171 2 156 159 165 50 8e-40 MSTIAKDQTQINEKIRAKELRLIGQDGEQIGVKSKREALEMAERVDLDLVVVAPNAKPPV ARIMDYGKYKFEQQKKEKEMKKKQKVINVKELRLSPTIEEHDFQTKLKNGRKFLSKGDKC KVSIRFRGRAITHKEIGQRVLEKFADECKDIATVEQKPKMEGRQMFIMLAPINEK >gi|224999878|gb|ACJC01000122.1| GENE 15 13521 - 15023 1323 500 aa, chain - ## HITS:1 COG:SA1505 KEGG:ns NR:ns ## COG: SA1505 COG0833 # Protein_GI_number: 15927260 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 5 495 6 496 497 786 84.0 0 MNNNNKQIDGVQRGLKDRHISMIAIGGCIGTGLFMTSGGAIHDAGALGALIAYAVIGAMV FFLMTSLGEMATYLPVSGSFSTYATRFVDPSLGFALGWNYWFNWVITVAADVTIAAQVIQ YWSPMQGIPAWVWSCIFLIIIFALNSLSVRVYGESEYWFALIKVVTVIIFIGIGILTILG IMGGEFVGFDTFTKGDGPILGGNLGGSLLSILGVFLVAGFSFQGTELIGITAGESENPER AVPKAIKQVFWRILLFYILAIFIIGMLIPYDSEALMGGGDSIATSPFTLVFKNAGLAFAA SFMNAVILTSVLSAGNSGMYASTRMLYSMSRDKLAYNSFGKTNKNGVPYVSLIATGILVI LIFALQHLSGDAYEYIVAASGMTGFIAWVGIAISHFRFRRAFDKQNYDKSKLKYKAKLFP FGPIFAGVLCVIVIIGQDVDFIKTGNFDMNRFFITYMGIPVFLIFFFYHKFRYKTKKIPL NKVDLRQDVSMEEIRHHKNN >gi|224999878|gb|ACJC01000122.1| GENE 16 15452 - 17389 2503 645 aa, chain - ## HITS:1 COG:SA1506 KEGG:ns NR:ns ## COG: SA1506 COG0441 # Protein_GI_number: 15927261 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 645 1 645 645 1168 89.0 0 MNQINIQFPDGNTKEFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTRPLEQDGTIE IITPGSEEALEVLRHSTAHLMAQALKRLYGDVKFGVGPVIEGGFYYDFDMDDKVSSDDFD KIEKTMKQIVNENHKIVREVVSKEEAKDFFKDDPYKLELIDAIPDDESVTLYTQGEFTDL CRGVHVPSTSKIKEFKLLSTAGAYWRGNSDNKMLQRIYGTAFFDKKDLKAHLKMLEERRE RDHRKIGKDLELFTNNQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLAN VDLYKTSGHWDHYQEDMFPAMKLDEDEAMVLRPMNCPHHMMIYKNKPHSYRELPIRIAEL GTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIQDVYKDFGFEDYRF RLSYRDPEDKHKYFDDDEMWEKAESMLKEASDELGLTYEEAIGEAAFYGPKLDVQVKTAM GKEETLSTAQLDFLLPERFDLTYIGQDGEQHRPVVIHRGVVSTMERFVAFLTEETKGAFP TWLAPMQVEIIPVNVDLHYDYARLLQDELKSQGVRVEIDDRNEKMGYKIREAQMKKIPYQ IVVGDKEVENQEVNVRKYGSEKQESVEKDEFIWNVIDEIRLKKHR >gi|224999878|gb|ACJC01000122.1| GENE 17 17743 - 18663 800 306 aa, chain - ## HITS:1 COG:SA1507 KEGG:ns NR:ns ## COG: SA1507 COG1484 # Protein_GI_number: 15927262 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Staphylococcus aureus N315 # 1 306 1 306 306 522 82.0 1e-148 MKSFRNIMGDSQNLDKRIQKIKQNVINDPDVKHFLEKNRSHITNEMIDEDLNVLQEYKDQ QKVYDGHRYDDCPNFVKGHVPELYIENERIKIRYLPCPCKIKHDEERFDSQLIISHHMQR DTLHAKLKDIYMNNRERLDVAMAADKICTAITNDEKVKGLYLYGPFGTGKSFILGAIANQ LKSQKISSTIVYLPEFIRTLKGGFKDGSFEKKLQRVREANILMLDDIGAEEVTPWVRDEV IGPLLHYRMVHELPTFFSSNFNYSELEHHLSITRDGTEKTKAARIIERIKTLSSPYYLTG KNYRNN >gi|224999878|gb|ACJC01000122.1| GENE 18 18663 - 20033 1210 456 aa, chain - ## HITS:1 COG:SA1508 KEGG:ns NR:ns ## COG: SA1508 COG3611 # Protein_GI_number: 15927263 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Staphylococcus aureus N315 # 1 454 1 464 466 518 60.0 1e-146 MGLQTYEYGLKPQDGFEVITHFEFTSQHLDILNRLFTPLIGVESIGLYHFMSQFIDESQQ LGLTHYIFMNELKINLLDFREQMDNLEAIGLIKTFVRHEEKYSHFVYELIQPPTAYQFFN DPMLSVFLFSEVDKKRYQALKSYFEKDEKDLSKYQQTTRKFTEVFNVPKKVNVSDQINLK QIKHYNGIDLSNETFDFEMLRQMLNHHFISNEIIDKEAKNLIIQLATLYGITEDGMKNVI LSSITSAQQLSFEEMRKQARTYYLIEHDNQLPKLEHQTHKTNDEKKDRHAKDTTNDWLQL LDETSPIDMLASWSDSEPTQSQKSMIEELINREKMNFGVINILLQFVMLKEDMKLPKSYI FEIASNWKKIGISNAKQAYEYALQVNQPKNYETHSNDKRQNNRGRQNQFLSKEKTPKWLQ NRDNQEDNKDINDDTLEEDRQAFLEKLNQKWKEEDN >gi|224999878|gb|ACJC01000122.1| GENE 19 20034 - 20504 459 156 aa, chain - ## HITS:1 COG:SA1509 KEGG:ns NR:ns ## COG: SA1509 COG1327 # Protein_GI_number: 15927264 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Staphylococcus aureus N315 # 1 155 1 155 156 266 93.0 1e-71 MKCPKCNSTHSRVVDSRHADEANAIRRRRECENCGTRFTTFEHIEVSPLIVVKKDGTREQ FLREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDEGQTEISSREIGEHVMNLLMHVD QVSYVRFASVYKEFKDVDQLLESMQGILSDNKRSDK >gi|224999878|gb|ACJC01000122.1| GENE 20 21023 - 22048 1090 341 aa, chain - ## HITS:1 COG:SA1510 KEGG:ns NR:ns ## COG: SA1510 COG0057 # Protein_GI_number: 15927265 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 340 1 340 341 546 82.0 1e-155 MATNIAINGMGRIGRMVLRIALNNKNLNVKAINASYPPETIAHLLNYDTTHGVYDKKVEP IESGIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAKKVLLT GPSKGGDVQMIVKGVNDNQLDIDTYDIFSNASCTTNCIGPVAKVLNDKFGIINGLMTTVH AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPEVEGKLHGMALRVPTKNV SLVDLVVDLEQNVTVTQVNDAFKNADLTGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVM GQNKVKVIAWYDNEWGYSNRVVEVADKIGQLIDDKAMVKAI >gi|224999878|gb|ACJC01000122.1| GENE 21 22151 - 22357 140 68 aa, chain - ## HITS:1 COG:SA1603 KEGG:ns NR:ns ## COG: SA1603 COG3666 # Protein_GI_number: 15927359 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 9 68 51 110 116 84 68.0 4e-17 MPTHNLYFRVEKFLNDSIRMMWFSQIQNSSYKTINRYRVNTKVDVLLESLFIQFHSQCLN QNLINDKA >gi|224999878|gb|ACJC01000122.1| GENE 22 22389 - 22538 101 49 aa, chain - ## HITS:1 COG:no KEGG:SE0076 NR:ns ## KEGG: SE0076 # Name: not_defined # Def: putative transposase # Organism: S.epidermidis # Pathway: not_defined # 1 48 1 51 553 68 72.0 7e-11 MYKDYNMTQLTLLKETSVHIPTHDMSQYANDIVETIPDTEFRPHRCATL >gi|224999878|gb|ACJC01000122.1| GENE 23 22914 - 23525 782 203 aa, chain - ## HITS:1 COG:SA1511 KEGG:ns NR:ns ## COG: SA1511 COG0237 # Protein_GI_number: 15927266 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Staphylococcus aureus N315 # 1 199 1 199 207 300 80.0 9e-82 MSKVIGITGGIATGKSTVSELLTAYGFKIVDADIASREAVKKGSKGLEQVKEIFGEEAID ENGEMNRQYVGEIVFNHPDLREALNEIVHPIVREIMEQEKNNYLEHGYHVIMDIPLLYEN ELQDTVDEVWVVYTSESIQIDRLMERNNLSLEDAKARVYSQISIDKKSRMADHVIDNLGD KLELKQNLQKLLEEEGYIQSESE >gi|224999878|gb|ACJC01000122.1| GENE 24 23541 - 24413 755 290 aa, chain - ## HITS:1 COG:SA1512 KEGG:ns NR:ns ## COG: SA1512 COG0266 # Protein_GI_number: 15927267 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Staphylococcus aureus N315 # 1 290 1 290 290 416 69.0 1e-116 MPELPEVEHVKRGIEPLIKSAKIEKVTFAKNVINGKNNHRETIIKGMELDTFKKLTEGYV IKKVERRSKYIIFYIAYHDEDRILVSHLGMAGGFFVVNNLDEISTPNYRKHWQVIFDLDN DQKLVYSDIRRFGEIRNIVNFDSYPSLLEIAPEPFEEVAFEHYLECLTLKKYKNKPIKQT ILDHRVIAGAGNIYACEALFRAGITPDKITNSLTKQERKSLFYYVREVLEEGIKYGGTSI SDYRHADGKTGQMQLHLNVYKQKKCKVCGHSIETKVIAGRNSHFCPNCQR >gi|224999878|gb|ACJC01000122.1| GENE 25 24429 - 27059 2516 876 aa, chain - ## HITS:1 COG:SA1513_2 KEGG:ns NR:ns ## COG: SA1513_2 COG0749 # Protein_GI_number: 15927268 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Staphylococcus aureus N315 # 325 876 1 552 552 894 83.0 0 MNKLVLIDGNSLSFRAFYALPLLSNHAGIHTNAVYGFAMLLEKIIKEEKTNHFLVAFDAG KTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLSRQA DEADFETIIITGDRDLTQLATDNVTIYYTKKGVTDVDHYTPEFIAEKYQGLVPKQIIDMK GLMGDTSDNIPGVAGVGEKTAIKLLNQFESVEGVYEHIEEVTAKKLKEKLINSKADALMS KDLATINVHSPIEVSLEDTKLTLQDDTAEKIELFKKLEFKQLLADIDTPSNNEEVIDKTF EIEQDFQNVDLNDLNEAVIHFELEGTNYLKDAILKFGFYTNHQHVVINADDVKNYKNLVR WLEDKNTTKIVYDAKKTYVSAHRLGINIENIEFDVMLASYIIDPSRSIDDVKSVVGLYGQ NYVKDNITVFGKGKKHHIPEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLEL PLARILSEMEEIGIYTDINDLKEMEFEIQKKLDVLISNIHESAGEAFNINSPKQLGVVLF ETLQLPVIKKTKTGYSTAVDVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDH RIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPTSKDSVILSADYSQIELR VLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGISDYG LSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRN FNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSE VEDFSKFVEEIMEQALVLDVPLKVDSNYGATWYDAK >gi|224999878|gb|ACJC01000122.1| GENE 26 27368 - 29065 1322 565 aa, chain - ## HITS:1 COG:SA1515 KEGG:ns NR:ns ## COG: SA1515 COG0642 # Protein_GI_number: 15927270 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 564 1 551 554 617 62.0 1e-176 MLKFHLRLLLLISTITIISFIGLGAIIHNTIYQTLTSNQIKSLDSEARNYINLFNNNKEK EITNIAHNEKNIILIKENDKDKIIYSSGNIKNIDHRIDNEANPSKLINKNTKLGMRYTYK NTIDNKTIYISGINNEIIDLQKDLWKYLSIVGVIVLFTVYLASRSINRTYIRPINEVTYA TSLLADGYYHVRVPESNVKETRALFVTTNDLARRLQKLNNSQKIQSNRLKTTLENIPSSV LMIDKHGEIVVANHAYYQVFNPDQMVENKSYIGFIDDSIEKLIIESFRTEKVIYEQLEVD INNVHTKYFDVSCIPILTKSKKNLQGMVVVLHDITNLQKLENLRREFVANVSHELKTPIT SIKGFAETLIEGAKNDEQSLDMFLNIILKESNRIESLVTDLLDLSHIEQQKELEINYMNL SELAINIIDNLQTQAQNKRIKIQSEIEKDVIIEAHENKIAQVITNLLSNAINYSSEDNKV IVRVYRNDNKVYLEIQDYGIGISETDQKRIFERFYRVDKARSRDSGGTGLGLSITKHIVE AHNGRIDVKSEPGKGSIFKVLFNDN >gi|224999878|gb|ACJC01000122.1| GENE 27 29065 - 29775 753 236 aa, chain - ## HITS:1 COG:SA1516 KEGG:ns NR:ns ## COG: SA1516 COG0745 # Protein_GI_number: 15927271 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 235 1 232 234 373 86.0 1e-103 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVMLPKKD GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR SQFVNEIEKEDVDDEDIIIGSIRIRPEFFEVYKEDELLELTPKEFELLLYLIERQGRVIT REHMLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLERPKA >gi|224999878|gb|ACJC01000122.1| GENE 28 30189 - 31457 1667 422 aa, chain - ## HITS:1 COG:SA1517 KEGG:ns NR:ns ## COG: SA1517 COG0538 # Protein_GI_number: 15927272 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Staphylococcus aureus N315 # 1 422 1 422 422 785 93.0 0 MSAEKITQGKDGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEV LAGQKAYDETGEWLPQETLETIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRP VRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIEFKQGTSEVKKVIDFLQNEMGATNIRF PETSGIGIKPVSKEGTERLVRAAIQYAIDNDRKSVTLVHKGNIMKFTEGSFKQWGYDLAH NEFGDKVFTWQQYDEIVEQKGKDAANEAQSKAEQEGKIIIKDSIADIFLQQILTRPAEHD VVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSS EILSSVLMLEHLGWQKAADKITDSIEATIASKIVTYDFARLMDGAKKVSTSDFADELIKN IR >gi|224999878|gb|ACJC01000122.1| GENE 29 31500 - 32621 1393 373 aa, chain - ## HITS:1 COG:SA1518 KEGG:ns NR:ns ## COG: SA1518 COG0372 # Protein_GI_number: 15927273 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Staphylococcus aureus N315 # 1 372 1 372 373 649 85.0 0 MAELKRGLEGVIAAETKISSIIDSQLTYAGYDIDDLAENAQFEEIIFLLWNYRLPNEKEL SELKEKLFDYMTLNTRVYKHFEEYVTDHVHPMTALRTSVSYVAHFDPEAENESDENKYDR AIRIQAKIASLVTAFARVRDGKEPVKPNSELSYAANFLYMLRGELPTEVEVEAFNKALIL HADHELNASAFTARCAVSSLSDMYSGVVAAIGSLKGPLHGGANERVMSMLKEIGSIDNVD HYLDERFANKDKIMGFGHRVYKDGDPRAKYLREMSRKITEETGQSELFEMSLAIEKRMKE EKGLIPNVDFFSATVYHSMNIPHDLFTPIFAVSRASGWIAHILEQYRDNRIMRPRAKYIG EQNRKYVPIEERS >gi|224999878|gb|ACJC01000122.1| GENE 30 32969 - 34327 1341 452 aa, chain + ## HITS:1 COG:SA1519 KEGG:ns NR:ns ## COG: SA1519 COG1113 # Protein_GI_number: 15927274 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 446 1 446 453 692 88.0 0 MAENLQRELSNRHVQLIAIGGAIGTGLFLGAGQTIAMTGPSILLTYIIIGFMLFMFMRGL GEIIIQNTNFKSFADVTNTYIGPFAGFVTGWTYWLCWIITGMAEVTAVAKYISFWFPDIP NWISALFCVLILMSFNLLSAKLFGELEFWFAIIKIVTIIALIVIGVIMILFAFKTPFGNT SLTHLYQHGIFPKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPEKTIPKAINSVPIRI LIFYVGALAVIMSIIPWDKVDPDNSPFVRLFALIGIPFAAGIINFVVLTAAASSCNSGIF SNSRMLYGLSNQNQAPPTFASTNKHGVPHKAIIASSALLLIAALLNYIFPDATLVFTYVT TISTVLFVVVWALIIIAYINYSRKNPELHKKATYKLPGGQYMGYLILIFFVFVFALLFIN VDTRRAIYCTPIWFILLGLMYLRYKKANKEAR >gi|224999878|gb|ACJC01000122.1| GENE 31 34777 - 36534 2194 585 aa, chain - ## HITS:1 COG:SA1520_1 KEGG:ns NR:ns ## COG: SA1520_1 COG0469 # Protein_GI_number: 15927275 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Staphylococcus aureus N315 # 1 475 1 475 475 803 90.0 0 MRKTKIVCTIGPASESEEMLEKLMNAGMNVARLNFSHGSHEEHKARIDTIRKVAKRLNKT IGLLLDTKGPEIRTHNMKDGLIVLEKGKEVIVSMDEVEGTPEKFSVTYENLINDVNIGSY ILLDDGLVELQVKEINKDKGEVKCDILNTGELKNKKGVNLPGVKVNLPGITDKDADDIRF GIKENVDFIAASFVRRPSDVLDIRQILEEEKAEITIFPKIENQEGIDNIEEILEVSDGLM VARGDMGVEIPPESVPMVQKDLIRKCNKLGKPVITATQMLDSMQRNPRATRAEASDVANA IYDGTDAVMLSGETAAGQYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIG VSVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEKTARQCAIVWGVNPVV KEGRKTTDALLNNAVATAVETGRVSNGDLIIITAGVPTGEKGTTNMMKIHLVGDEIAKGQ GVGRGSVVGHAIVADSASDLEGKDLSDKVIITNSVDETLVPYVEKAIGLITEENGITSPS AIIGLEKGIPTVVGVEQATKEIKNDMLVTLDASQGKVFEGYANVL >gi|224999878|gb|ACJC01000122.1| GENE 32 36558 - 37526 1260 322 aa, chain - ## HITS:1 COG:SA1521 KEGG:ns NR:ns ## COG: SA1521 COG0205 # Protein_GI_number: 15927276 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Staphylococcus aureus N315 # 16 322 1 307 307 513 84.0 1e-145 MKKIAVLTSGGDSPGMNAAVRAVTRTAIYNNIEVYGVYQGYQGLLDDDIHKLELGSVGDT IQRGGTFLFSARCPQFKEEDVRKKAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQ TIGIPGTIDNDINGTDFTIGFDTALNTIIESVDKIRDTASSHARTFIVEVMGRDCGDLAL WAGLSVGAETIVLPEVNTDIKDVAEKIEQGIKRGKKHSIVMVAEGCMSGQECADELTKYI NIDTRVSVLGHIQRGGSPSGADRVLASRLGGYAIELLKQGETAKGVGIRNNQLTSTPFDE IFAENDRKFNSQMYELAKELSI >gi|224999878|gb|ACJC01000122.1| GENE 33 37703 - 38647 1168 314 aa, chain - ## HITS:1 COG:SA1522 KEGG:ns NR:ns ## COG: SA1522 COG0825 # Protein_GI_number: 15927277 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Staphylococcus aureus N315 # 1 314 1 314 314 501 84.0 1e-142 MLDFEKPLFEIRNKIDSLKESQEKNEVDLQDEIDMLEASLKRETTKVYTNLKPWDRVQIA RLPERPTTLDYISYIFDSFIELHGDRTYRDDPAMIGGIGYLDGKPVTVIGQQRGKDTKDN IYRNFGMAHPEGYRKALRLMKQAEKFNRPVFTFIDTKGAYPGKAAEERGQSESIAKNLME MASLTVPVIAIVIGEGGSGGALGIGISNRVLMLENSTYSVISPEGAAALLWKDSNLAQIA AETMKITAHDLLDLGIIDEVINEPLGGAQKDEEAQALSIKKMFLKHLNELKQLTPEELAN DRFEKFRQIGSVVE >gi|224999878|gb|ACJC01000122.1| GENE 34 38647 - 39504 696 285 aa, chain - ## HITS:1 COG:SA1523 KEGG:ns NR:ns ## COG: SA1523 COG0777 # Protein_GI_number: 15927278 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Staphylococcus aureus N315 # 1 284 1 284 285 539 91.0 1e-153 MFKDFFNRSKKKKYLTVQDSKQNDVPAGIMTKCPKCKKIMYTKELNENLNVCFNCDHHIA LTAYKRIEAISDEGSFIEFDRGMTSANPLDFPGYEEKIEKDQQKTGLNEALVSGTAKLDG IQYGVAVMDARFRMGSMGSVVGEKICRIIDYCTEHRLPFILFSASGGARMQEGIISLMQM GKTSVSLKRHSDAGLLYISYITNPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTI NEKLPDDFQTAEFLLEHGQLDKVIHRKDMRETLSNILKIHQEVSN >gi|224999878|gb|ACJC01000122.1| GENE 35 39602 - 40831 1305 409 aa, chain - ## HITS:1 COG:SA1524 KEGG:ns NR:ns ## COG: SA1524 COG0281 # Protein_GI_number: 15927279 # Func_class: C Energy production and conversion # Function: Malic enzyme # Organism: Staphylococcus aureus N315 # 1 409 1 409 409 677 83.0 0 MSLRDDALEMHRENQGKLEITPNVKVTNKQQLSLAYSPGVAEPCKEIHEDPRKVYEYTIK GNTVAVVTDGTAVLGLGNIGAEASIPVMEGKAALFKSFAGINGVPIALDTTDTQEIIKTV KLIQPNYGGINLEDISAPRCFEIEETLKKETNIPIFHDDQHGTAIVTMAGLINALKIVNK ELTDIKVVLNGAGAAGIAIVKLLHAYGVNNMIMCDSKGAIYSGRNLGMNDTKTYVAKWTN KDKVEGSLEEVIKDADVFIGVSVADILTQNMVKTMADDPIIFAMANPNPEINPNEAKQAG AKVVGTGRSDFPNQINNVLAFPGIFRGALDVEATHINEHMKKAAVEAIVHLIDENELHPD YCIPGPFDKRVAPSVAKNVAKAAMESGVARIKIDTQEIFDKTMKLTDLK >gi|224999878|gb|ACJC01000122.1| GENE 36 41135 - 44332 2755 1065 aa, chain - ## HITS:1 COG:SA1525 KEGG:ns NR:ns ## COG: SA1525 COG0587 # Protein_GI_number: 15927280 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Staphylococcus aureus N315 # 1 1065 1 1065 1065 1511 70.0 0 MEAHLNIHTSFDLLDSSLRIDALIDKAKKEGYRALAITDTNVLYGYPKFYDACIAAHIHP IFGMTIYLTDGLYTIETVVLAKNNQGLKSLYQLSSAIMMKNKEEVPIEWLKKYDKHLIII FKEAELSHKQIIDAFEGKKELYLNHNSNNTLTGKRVWMQSARYLNEDDAETIPALHAIRD NTKLDLIHEKETLDEHFPSMEELQTLNLSEDMIANTNEIEKLCQAEIAYHQSLLPQFVTP NGETSKDYLWTILIHRLQKWELNDKTYFDRLKHEYKIITDMGFEDYFLIVSDLIHFAKTH EVMVGPGRGSSAGSLVSYLLGITTIDPLKYNLLFERFLNPERVTMPDIDIDFEDTRREKV IKYVQDKYGEHHVSGIVTFGHLLARAVARDVGRIMGFDETSLNEISKLIPHKLGITLEEA YQKPEFKAFVHRNHRNERWFEVSKKLEGLPRHTSTHAAGIIINDQPLFKFAPLTTGDTGL LTQWTMTEAERIGLLKIDFLGLRNLSIIHQIILQVKKDLNINIDIEAIPYDDKKVFDLLS NGDTTGIFQLESEGVRSVLKRLQPEHFEDIVAVTSLYRPGPMEEIPTYITRRHNPNQVAY LHPDLEPILKNTYGVIIYQEQIMQIASQVAGFSYGEADILRRAMSKKNRAILESERQHFI DGAKNNGYGEQISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSYLKVHYPHYFYANILS NVIGSEKKTAAIIDEAKHQRISILPPNINQSHWYYKASNKGIYLSLGTIKGIGYQSVKLI IDERQQNGPYRDFFDFSRRIPKRVKNRKLLESLILVGAFDTFGKTRATLLQAIDQVLDLN SDVEQDDMLFDLLTPKQSYEEKEELPDQLLSDYEKEYLGFYISKHPVEKKFEKKQYLGIF QLSNGSHYQPILVQFDHIKQIRTKNGQNMAFVTMNDGRTMMDGVIFPDKFKKYETSISKE QMYIVLGKFEKRNQQMQLIINQLFEVEAYEQTKLSNSKKVILRNVTHLEPQFEHSKVQSN KQHALNIYGFDECANKMTMLGQIERQPQNFDLLIQTYSPADIRFI >gi|224999878|gb|ACJC01000122.1| GENE 37 44356 - 45294 598 312 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 7 312 6 309 311 234 41 1e-60 MEVKMNEIMEALEQSELIIIHRHLRPDPDAYGSQLGLKYYLQKKFPDKQIYAVGTNEDSL KFIGLMDEIDNDMYKKATVVVCDTANAPRIDDQRYDTGTKLLKIDHHPATDQYGDINYVN TKASSTSEIIYEFISHFNDEHIIDEQVARLLYLGIVGDTGRFLFNNTTPRTMQIAGKLLT YPFDHNQELNKMSEKDPKLLPFQGYILQNFDLNDKGFCKVKITKDILEKFQIQPNEASLF VNTIADIRGLKIWMFGVDEGDQIRCRLRSKGHIIINDVANTFGGGGHPNASGVSVNSWEQ FEQLAEALNDKL >gi|224999878|gb|ACJC01000122.1| GENE 38 45329 - 46627 1281 432 aa, chain - ## HITS:1 COG:SA1527 KEGG:ns NR:ns ## COG: SA1527 COG4109 # Protein_GI_number: 15927282 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Staphylococcus aureus N315 # 1 430 1 430 432 602 72.0 1e-172 MTKNEQIIKHIESLSIGSKISVRKIAKDLNVSEGTAYRAIKDASQLGIVATIDRVGTVRI EKRNRENLDNLTFNEIANIVEGQILAGRAGLNKSVSKFAIGAMQFDDILKYIGKHTLLIV GNRENVQIEALKRETSILITGGFRPSAEIIRYADEHELPIISSSYDTFLVANIINKAMFN QKIRKEILVVEDIVKPINELSVLFDSMTIHDYKKIANETGHTRFPIVNEEFKLVGIVTSR EIINMNEEDLLGKVMTKNPLSVKLTNTVASCAHLLIWEGIELLPVTDNNKKAVGVINRQD VLKSMQLLGRQPQIGETVNDQIAKHISIHQQGINVDVSPLITNHYGTLSKAVFVGIIEET IRHEMRKYKKGNVMIESMSIIYIKTVPIESSIEVHYEMLDVGRYFAKLEVTMINNGEKVA NALVICQMFDGF >gi|224999878|gb|ACJC01000122.1| GENE 39 46825 - 47238 602 137 aa, chain + ## HITS:1 COG:SA1528 KEGG:ns NR:ns ## COG: SA1528 COG0589 # Protein_GI_number: 15927283 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 1 137 1 137 137 201 87.0 5e-52 MYKHILLGVDTQIKNEKALKEVSRLAGEGTIVTVLNAINEQDAQASIRAGVHLDKLTEKR SKGLESTLKTLEDYGIDYDEVIVRGNAKDELLKFANSGKYEIVVLSNRKAEDNKKFVLGS VSHKVAKRATIPVLIVK >gi|224999878|gb|ACJC01000122.1| GENE 40 47500 - 48189 764 229 aa, chain - ## HITS:1 COG:SA1529 KEGG:ns NR:ns ## COG: SA1529 COG2220 # Protein_GI_number: 15927284 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Staphylococcus aureus N315 # 1 229 1 229 229 390 84.0 1e-109 MKLSFHGQSTIYFEGNGKKVIVDPFISGNDKCDLDEQTLEVDYIILTHGHADHFGDVVEL ANRNHATVIGSAELQGYLSTYHGVENVHGMNIGGKAKFDFGTVKFVQAFHSSSFTHENGV PVYLGMPMGIIVEAEGKTIYHTGDTGLFSDMKLIADRHPVDVCFVPIGDNFTMGIEDASY AINEFIKPTISVPIHYNTFPLIEQDPEQFKDAVQVGEVQILNPGESVEF >gi|224999878|gb|ACJC01000122.1| GENE 41 48361 - 49416 1082 351 aa, chain + ## HITS:1 COG:SA1530 KEGG:ns NR:ns ## COG: SA1530 COG0006 # Protein_GI_number: 15927285 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 1 351 8 358 358 543 76.0 1e-154 MTKIEEIKKVLQQEDADAAWITTPLNIFYFTGYRSEPHERLFALLIPSNEEPVLFCPKME VEEVKQSPFKGKIVGYLDTENPFDKYSKTFSKMLIESEHLTVKRQRELTKAFNIEHYQDV DQSIKDLRNIKSEDEIINIKKAAALADKCIEIGKSFLKEGVEEREVVNHIENEIKKYGVN EMSFDTMVLFGDHAASPHGTPGDRKLKQNEFVLFDLGVVYHHYCSDMTRTIHFGKPNKEA QNIYNIVLKAETEAIKSIKPGVTIKDIDKIARDIIQEAGYGDYFPHRLGHGLGLEEHEYQ DISSVNNNKLEAGMVITIEPGVYVPHVAGVRIEDDILVTENGYEILTQYEK >gi|224999878|gb|ACJC01000122.1| GENE 42 49479 - 50594 1428 371 aa, chain - ## HITS:1 COG:SA1531 KEGG:ns NR:ns ## COG: SA1531 COG0686 # Protein_GI_number: 15927286 # Func_class: E Amino acid transport and metabolism # Function: Alanine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 371 1 371 372 624 84.0 1e-178 MKIGIPKEIKNNENRVGLSPSGVHALVDQGHEVLVETNAGLGSYFEDGDYQEAGAKIVDE QSKAWDVDMVIKVKEPLESEYKFFKEELILFTYLHLANEQKLTQALVDNKVISIAYETVQ LPDGSLPLLTPMSEVAGRMSAQVGAEFLQRFNGGMGILLGGIPGVPKGKVTIIGGGQAGT NAAKIALGLGAEVTILDVNPKRLEELEDLFDGRVRTIMSNPLNIEMYVKESDLVIGAVLI PGAKAPNLVTEDMIKEMKDGSVIVDIAIDQGGIFETTDKITTHDAPTYTKHGVVHYAVAN MPGAVPRTSTIGLNNATLPYAQLLANKGYREAFKVNHPLSLGLNTFNGHVTNKNVADTFN FEYTSIEDALK >gi|224999878|gb|ACJC01000122.1| GENE 43 50743 - 51243 725 166 aa, chain + ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 1 166 1 166 166 298 90.0 3e-81 MISYKNILIAVDGSHEAEWAFNKAVGVAKRNDAQLTIVNVIDSRTYSSYEVYDAQFTEKS KHFSEELLKGYKEVATNAGVKNVDTRLEFGSPKAIIPKKLAHDVGADLIMSGTSGLNAVE RFIVGSVSEAIVRHAPCDVLVVRTEEMPEDFQPQVATSQLREKYQD >gi|224999878|gb|ACJC01000122.1| GENE 44 51381 - 52571 1462 396 aa, chain - ## HITS:1 COG:SA1533 KEGG:ns NR:ns ## COG: SA1533 COG0282 # Protein_GI_number: 15927288 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Staphylococcus aureus N315 # 1 377 22 399 400 624 81.0 1e-178 MPEEKLVTKGVIERIGLSDSIFTIHVNGEKLTDIRDIHNHEEAVNIMLDSFKEHEMIKDI TDIQGTGHRVVHGGETFPKSVVVTDDVESQIEELSELAPLHNPANLMGIRAFRKLLPEIP HVAVFDTSFHQTMPEQAYLYSLPYHYYEDYGIRKYGFHGTSHKYVSRRAAQIVGRPIEDL RIISCHIGNGASIAAIDGGESIDTSMGFTPLAGVTMGTRSGNLDPALIPFIMEKTGKTAD EVLEILNKESGLLGLTGTSSDLRDLTEEAKHGRQRSRVALDLFASKIHKYIGSYAARMHG VDIIVFTAGIGENSHIIRGKVLEGLEFMGVYWDPKKNESLHGEEGYINYPHSPVKVLVVP TDEEVMISRDVIKYGQLNDNTPKKEEFNTNESIEVN >gi|224999878|gb|ACJC01000122.1| GENE 45 52723 - 53670 1147 315 aa, chain - ## HITS:1 COG:SA1534 KEGG:ns NR:ns ## COG: SA1534 COG0827 # Protein_GI_number: 15927289 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Staphylococcus aureus N315 # 1 315 1 315 315 519 84.0 1e-147 MSEENTIMERLFHTLDDKAKVLNKENGQSFIENLGLAMEDIYTNQRELLEQATLQDRRKA FQFAYLSLLQEENIQANHQITPDSIGLILGFLVQRFLEHKEEMHIVDIASGAGHLSAAVK EVLSDKTIMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADVVIGDFPIG YYPLDERSREMKLGFEEGHSYSHHLLIEQSINALKGAGYAFLVVPSHLFEDDKVKQLENF IATETEMQAFLNLPKTLFKNEKARKSILILQKKKSGETRPVEVLLANIPDFKNPQQFQGF ISELNQWIVTNHTKK >gi|224999878|gb|ACJC01000122.1| GENE 46 53799 - 54293 536 164 aa, chain - ## HITS:1 COG:SA1535 KEGG:ns NR:ns ## COG: SA1535 COG2077 # Protein_GI_number: 15927290 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Staphylococcus aureus N315 # 1 164 1 164 164 265 77.0 2e-71 MTQITFKNNPIKLSGSEVNEGDIAPNFTVLDNSLNQITLDDYKNKKKLISVIPSIDTGVC DSQTRKFNEEASAEDGVVLTISVDLPFAQKRWCASSGLENVITLSDHKDLSFGRNYGLVM DELRLLARSVFVLNENNKVVYKEIVSEGTNYPDFEAALKAYRNI >gi|224999878|gb|ACJC01000122.1| GENE 47 54533 - 55297 738 254 aa, chain - ## HITS:1 COG:SA1536 KEGG:ns NR:ns ## COG: SA1536 COG0730 # Protein_GI_number: 15927291 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 1 254 1 254 256 275 69.0 6e-74 MDWNLSIMLMIVAFGFIASFVDSVVGGGGLISTPALLAVGLPPSVALGTNKFASSFSTLT SALKFLRSGKVDLKIVGKMFPLIFVASGGGAIIATYIPANILKPLIIIALSLVLIYTIIQ KDWGNVRTFTDFTFTKAVLFTLIFIVIGFYDGFLGGGTGSFMLFTLLLFGFNFLSAAGNA KVLNFASNCGALLFFMILGQVNYFYGIIMAFSMMIGALLGAQFALKKEVRYVKALFIVVT AILIIKNLYDFIVQ >gi|224999878|gb|ACJC01000122.1| GENE 48 55337 - 56560 1362 407 aa, chain - ## HITS:1 COG:SA1537 KEGG:ns NR:ns ## COG: SA1537 COG0301 # Protein_GI_number: 15927292 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Staphylococcus aureus N315 # 1 407 1 407 407 607 73.0 1e-173 MQFDHLLVRYGELTLKGTNRKMFVNQLKDNVKRALIPLRGYHLKGKRDRMYIELSPEADI NEIIHRLSKVYGIKSISPVIKIDKNEEKINQSAIQLSQDFVKGSTFKVDVKRVDKSFRLD TYELQRQVGGAILKENNNITVNVKNPDYEIKIEVRMDTIYIYEKVIAGAGGLPVGTGGKT LLMLSGGIDSPVAGIEVMKRGVTVEAIHFHSPPFTSEKAKDKVIELTRILAERVGPIKLH LVPFTEIQKQINKVVHPRYTMTSTRRMMMRISDKVVHQINANAIVNGENLGQVASQTLKS MYAINHVTATPVLRPLLTLDKEDIIKKAKELGTFETSIQPYEDCCTIFTPKNPVTEPDFD KVVKYESVFNFDEMIENAVENIETLTIDQNYKSAKEQSTDSLIKDLF >gi|224999878|gb|ACJC01000122.1| GENE 49 56560 - 57699 792 379 aa, chain - ## HITS:1 COG:SA1538 KEGG:ns NR:ns ## COG: SA1538 COG1104 # Protein_GI_number: 15927293 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Staphylococcus aureus N315 # 1 379 1 379 379 469 64.0 1e-132 MIYLDNAATTKADQDVVDSFVKVNQTLYFNPNSPHHAGVQAEQLLLKAKSEINRILSLNN QFDIIFTSGATESNNILLKGIAYMKKETANEIITSVLEHPSVLEVMRYLEREKGFKLKYV DVTKEGKLDTEHLKLLMTDKVGLVTCMYVNNIMGQIQPIEEIANIVKNYPRAHFHVDAVQ ALGKVPMQINHVDSLSLSGHKFNGLKGQGLLLLKNIQNIEPIVHGGGQEYGLRSGTVNLP MAISMVRAIKNAVDQTKELNLRLSNYKNKLLSFLAEYKNVFINSPQNASPHIINIGFPGV KGEVLVNAFSKQNVMVSTTSACSSKMNKLNEVLLAMEIAESKIEGSIRISLGAHTTENDI LSFMNAFETVYKEIKELLK >gi|224999878|gb|ACJC01000122.1| GENE 50 58029 - 59723 2075 564 aa, chain - ## HITS:1 COG:SA1539 KEGG:ns NR:ns ## COG: SA1539 COG4477 # Protein_GI_number: 15927294 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Staphylococcus aureus N315 # 1 564 1 564 564 739 84.0 0 MVLFIILAILVVILIAIGVLFYMRSNKRNLIEKTEERKNEIEQLPLDDNLRKLTGLNLKG ETKTKYDAMKKDNTETTNKYLAPVEEKIQNAEEFLEKFKFTAAQTEIDDAHELMDQYEEN YQHQVTQVDDIINLHKENEALYEKCKVDYREMKRDVLANRHQFGEAAEPLENEIENYEPK LNEYESLKSEGNYVQAHNHIVALQDQIKNLKFYMDEIPELIRETQKELPGQFQDLKYGCR DLKVEGYDLDHVKVDGTIQSLKTELSFVEPMISRLELDEANNKLENINDKLDEMYDLIEY EVKAKNEVEETKDIITDDLFKAKDMNYTLQTEIEYVRENYHINESDAQSVRQFENEIQSL ISVYDDILKETSKSAVRYSEVQDNLQYLEDHVSVINKEQDKLQNHLIQLREDEAEAEDNL LRVQSKKEEVYRRLLASNLTSVPERFIIMKNEIDNEVREVNDQFSERPIHVKQLKDKVAK IVIQMNTFEDEANDVLVNAVYAEKLIQYGNRYRKDHHHVDKSLNEAERLFKNNRYKRAIE IAEEALESVEPGITKHIEEQVIKE >gi|224999878|gb|ACJC01000122.1| GENE 51 59858 - 60328 315 156 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 7 149 8 150 165 125 42 7e-28 MTMNIPTNYKLISKQLASLIEDEKNLIAILSNTSALLNDTINHINWVGFYLIENKELILG PFQGHPACVHIAIGKGVCGTAVSSGEIQRVKDVHQFPGHIACDANSQSEIVIPLHQNGQI IGVLDIDAPIKNRFSQDDQEGLESIVKTLEKQLNQI >gi|224999878|gb|ACJC01000122.1| GENE 52 60549 - 61151 1032 200 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242242984|ref|ZP_04797429.1| 30S ribosomal protein S4 [Staphylococcus epidermidis W23144] # 1 200 1 200 200 402 100 1e-111 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYL YGMTERQFRNTFDIAGKQYGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVNHGHIE VDGGRVDIPSYSLKPGQVITVREKSQDLDIIKESVEINNFVPEYLDFDADNLKGTFVRFP ERSELPAEINEQLIVEYYSR >gi|224999878|gb|ACJC01000122.1| GENE 53 61425 - 62171 780 248 aa, chain - ## HITS:1 COG:SA1542 KEGG:ns NR:ns ## COG: SA1542 COG0584 # Protein_GI_number: 15927298 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Staphylococcus aureus N315 # 1 243 1 243 247 275 53.0 4e-74 MKIRRPNQHFQIVAHRGLPEDYPENTLIAYRHALMLHIDMLEIDVHYTKDKELVVIHDDT IDRTSNGKGKVSDFTLKELKALDFGFYKGEKFKGERIPTFDEVLDLADNFSQKLLIEIKK PSQYPNIENMIVDKLKERQISKSKVILQSFDFDCVKKLSAMNLDYELGLLISKKKYWHKL PNFKKIAKVADYANPNYQIVSKKFMQLAHEEELKILPYTVNKLKESQKLIDIGVDGIISD VPEDLFEL >gi|224999878|gb|ACJC01000122.1| GENE 54 62249 - 62689 521 146 aa, chain + ## HITS:1 COG:SA1543 KEGG:ns NR:ns ## COG: SA1543 COG1764 # Protein_GI_number: 15927299 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 1 143 1 143 148 186 65.0 1e-47 MVKHDFKVKTEWLGGREEVGQLRGDIINENISIPSSLGGQGKGTNPDELLVSAASSCYII SLAATLEKSGFTNVKINQQSIGTASFENKKFKMERITHYPSIEVPSSQKEKLKSILDKLL VIADKNCMISNAIRNNVIISIEPNLI >gi|224999878|gb|ACJC01000122.1| GENE 55 62816 - 63979 1141 387 aa, chain + ## HITS:1 COG:SA1544 KEGG:ns NR:ns ## COG: SA1544 COG0075 # Protein_GI_number: 15927300 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Staphylococcus aureus N315 # 1 387 1 384 385 598 75.0 1e-171 MQYYQPLLLTPGPTPVPEQILSAVQLPMVGHRSTDFEEIASEAFKGLKPVFGSKNEVLIL TSSGTSVLEASMLNIANPEDHIVIIVSGAFGNRFKQIAQTYYNHVHVYDVNWGEAVVVDD FINYLKQLNVPVTAVFTQFCETSTGVIHPVHQLGHALKAFDNSLYFIVDGVSCIGAVDVD LTKDKIDVLVSGSQKAIMLPPGLAFVAYSDRAKKRFADVETPRFYLDLNKYIKSQEQNST PFTPNVGLFRGINAYVELVKKEGLNHVISRHFKIRDALRTALKALELELLVKDDAHASPT VTSFVPKNQEELNIIKNQLKSQFNITIAGGQGHLKGQILRIGHMGKISPFDILAVVSALE IILTSNRNVNYIGKGITQFMEVIGHES >gi|224999878|gb|ACJC01000122.1| GENE 56 63969 - 65564 1639 531 aa, chain + ## HITS:1 COG:SA1545 KEGG:ns NR:ns ## COG: SA1545 COG0111 # Protein_GI_number: 15927301 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 5 531 6 532 534 728 72.0 0 MSHKILVSDPISEDGLQSILKHQEFEVDVQTDLSENDLVNMISTYEALIVRSQTQVTERI INAATNLKVIARAGVGVDNINIEAATLKGILVINAPDGNTISATEHSVAMLLAMARNIPQ AHQSLRNKEWNRKAFRGVELYGKTLGIIGAGRIGLGVAKRAQSFGMKILAFDPYLTEDKA KSLDIQIATVDEIAEKSDFVTVHTPLTPKTRGIVGSSFFNKAKKNLQIINVARGGIIDET ALIEALDNNLIDRAAIDVFEHEPPTDSPLIQHDKIIVTPHLGASTVEAQEKVAVSVSEEI IEILTKGNVEHAVNAPKMDLSKVDETTQSFIGLSTTIGELAIQLLDGAPSEIKVKYAGDL AQNDTSLITRTIITNILKEDLGNEVNIINALAILNQQGVTYNIEKQKKHSGFSSYIELEL VNDQDKIKIGATVFAGFGPRIVRINDYSLDFKPNQYQLVTCHKDKPGIVGQTGNLLGSHG INIASMTLGRNDAGGDALMILSIDQQASEEVIKILNETSGFNKIISTKLTI >gi|224999878|gb|ACJC01000122.1| GENE 57 65644 - 66768 1019 374 aa, chain - ## HITS:1 COG:SA1546 KEGG:ns NR:ns ## COG: SA1546 COG0546 # Protein_GI_number: 15927302 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 1 373 1 373 376 388 55.0 1e-108 MKAILFDVDGVFLSEERCFDVSAITVAELLSSPDFLNCGIDIHFDGNLTENDINKIRKNV FNHDRILNQLKSLGLNSNWDMLFIVFSIHLIDKAKQLKPSLREQLLDESLFTKETLKEIA KYLTDKTINYSLPYDVIASFRNGKDAIYEDLEVYAKNQLELNNTSLFKLKSPLWTLAKDI YQEWYLGKALFNQVEYKKDIQDFKKGFIYDEVILKPIDEIQLLLQNLIEAGYQIAIATGR PRTETIIPFQSLGLKSYFKDEHIVTASEVLLAEKQFPQYQPLGKPNPFSYIATLNGNYND QYERYATNQEDIVNKDEVYIVGDSLADLLSAKKIGATFIGTLTGLKGKAAHAELVENGAD YVVEDITKIRKILL >gi|224999878|gb|ACJC01000122.1| GENE 58 66864 - 68336 1384 490 aa, chain - ## HITS:1 COG:SA1547_1 KEGG:ns NR:ns ## COG: SA1547_1 COG1263 # Protein_GI_number: 15927303 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 1 416 1 415 417 597 79.0 1e-170 MYKFLQHLGRSLMLPVAVLPAAAIIVGIGHTLDALNILPQAALFFTSVGITILEQLGILF AIGVAIGMAKKNDGAVALAAALGFFIVTVVLSPEKLATLLQIKESKIDLAFSQMNNGNVF VGIIIGLIAAYSYNKFSETNLPMALSFFSGKRLVPIMTAFFCTILAVILLLIWPPVFNGI VTFGKWIVGMGPFGALLYGFFNRLLIPTGLHHALNNVFWFDTAGINDIGKFQSGKNAIKG ITGRYQAGFFPVMMFGIPAAALAMYHTAKTNQKKQVYAWFLASSVSAFFVGVTEPIEFAF MFVAPVLFVIHAVLTGLSLFIAAMFQWTAGFSFSAGLIDYVLSLVNPISNHPWMLLLQGV VFFIIYYVIFRVVIQVFNLNTIGRGDNELIDPTSNDTSEMEVLQNKTTTSKYYQNAKRIL DGLGGKENIISLNHCATRLRLELKDNSIIDEQKIKNAGAIGITQNGQHYTQVIIGTHVQQ VANEMDRQMN >gi|224999878|gb|ACJC01000122.1| GENE 59 68546 - 69169 729 207 aa, chain - ## HITS:1 COG:SA1548 KEGG:ns NR:ns ## COG: SA1548 COG0204 # Protein_GI_number: 15927304 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Staphylococcus aureus N315 # 1 205 1 205 205 332 80.0 4e-91 MYNFISKILDVILVKMSKSLYVIGKENIPKDSKYVVTCTHESYNEVIMLGMALLPNQIHY MAKKELFRNQWAGKFLKSLNAFPVDRENPGPSTLKKPVNLLKEHKTIGIFPTGHRTSVEG APLKRGAATIAMLGKAPILPAAYVGPKKIHGLITGQALIKIGKPIEMDDIPKDLKRNEKV DFLTKEIERRTTQLQKELNEISRSLKK >gi|224999878|gb|ACJC01000122.1| GENE 60 69449 - 70687 1320 412 aa, chain + ## HITS:1 COG:SA1549 KEGG:ns NR:ns ## COG: SA1549 COG0265 # Protein_GI_number: 15927305 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Staphylococcus aureus N315 # 1 409 1 411 424 538 73.0 1e-153 MSEQEKNQHHYRNSSQKRHTFPWIKTIIVAIIAGIIGALLVLGIGKLLNKTGFNNEGATV HQVSNSHGGNQLDGKSNQYKSVHDMIKDVSPAIVGVINMQKSTNLDDLFNGKASKSKEAG IGSGVIYQISDGSAYIVTNNHVVDGASEIKVQLHNTKQVDAKLIGKDALTDIAILKIKDT KGIKSIQFANSSKVQTGDSVFAMGNPLGLEFANSVTSGIISANERTIDANTSAGNTKVNV LQTDAAINPGNSGGALVDINGNLVGINSMKIAAAQVEGIGFAIPSNEVRVTIEQLVKHGK IERPSIGIGLINLSDIPENYRKELHTHKDKGVYVAKVDSDNAIKKGDIITGIDGKQIKDD TDLRTYLYESKKPGEMVTLKVIRDGKTQDINVKLKKQASAPESSQSQSQFAQ >gi|224999878|gb|ACJC01000122.1| GENE 61 70878 - 72143 731 421 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 12 417 16 414 418 286 39 4e-76 MTNALIEDLKWRGLIYQQTDEEGIEELLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRF QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTESQVEANVKGLSNQMHRLFEFDSDKGAQ LVNNKDWLGQISLISFLRDYGKHVGVNYMLGKDSIQTRLEHGISYTEFTYTILQAIDFGY LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTEAYGLTIPLVTKSDGKKFGKSESGAV WLDPEKTSPYEFYQFWINQSDEDVIKFLKYFTFLEKEEINRLEQSKNEAPHLREAQKALA ENVTKFIHGEAALKDAIRISKALFSGDLKSLSAKELKEGFKDVPQVTLSTKTTNIIEALI ETGIASSKRQAREDVNNGAIYINGERQQSVDYELSSKDLIEDEITIIRRGKKKYFMVNYQ S >gi|224999878|gb|ACJC01000122.1| GENE 62 72534 - 73439 533 301 aa, chain + ## HITS:1 COG:SA1551 KEGG:ns NR:ns ## COG: SA1551 COG0744 # Protein_GI_number: 15927307 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Staphylococcus aureus N315 # 17 299 17 300 301 343 65.0 2e-94 MHFNKYQILTTDKYTKFEHLYKKVKHICVMIFLVFFLIGFIILLSLVFYFQQLTKDASSI SDKDLKAKILHIPGDELINHNNQILEEYDHSQNTLIVGPNHVNSNIIHALTASEDTLFYK HNGIMPKALLRAMLQDITNSNQSSGGSTITQQLVKNQVLSNKKTYSRKANEIILATRVET LLSKDEIIYTYLNIVPFGHDYNGANITGISSASYSLFGIPAKDLNVAQSAYLIGLLQSPY GYTPYDEHGKIKPHHLLKLSMKRQQYVLKRMRVEGKISKQQYKNAEKYNIKQHLLKQSKD E >gi|224999878|gb|ACJC01000122.1| GENE 63 73529 - 75196 1789 555 aa, chain - ## HITS:1 COG:SA1553 KEGG:ns NR:ns ## COG: SA1553 COG2759 # Protein_GI_number: 15927309 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Staphylococcus aureus N315 # 1 555 1 555 555 947 86.0 0 MAHLSDLEIANLSKLKPISEIARKVGITEDALEPYGHYKAKIDINQIQEQEKKGKVVLVT AMSPTPAGEGKSTVTVGLADAFNKLNHNVTVALREPALGPTFGIKGGATGGGYAQVLPME DINLHFNGDFHAITTANNALSAFIDNHLHQGNELGIDQRRIEWKRVLDMNDRALRHVNVG LGGPTHGVPREDGFNITVASEIMAILCLSRNIKDLKEKISRITIGYTRHHKPITVSDLKV EGALTLILKDAIKPNLVQTIEGTPALVHGGPFANIAHGCNSILATETARNLSDIVVTEAG FGSDLGAEKFMNIKAREAGFDPSAVVVVATIRALKMHGGVAKDQLQHENIEAVEAGLVNL ERHVNNIKKYGVEPIVALNAFIHDTASETACVKQWAKDNQVRIALTEVWEKGGEGGIELA NQVFDVMQEPQNFKPLYDLKQPLEAKIETIVKEIYGGSKVNFSSKAQKQLKQFKENGWDE YPICMAKTQYSFSDDQTLLGAPNDFEITIRELEAKTGAGFIVALTGAIMTMPGLPKKPAA LNMDVTDDGKAIGLF >gi|224999878|gb|ACJC01000122.1| GENE 64 75614 - 76603 1110 329 aa, chain - ## HITS:1 COG:SA1557 KEGG:ns NR:ns ## COG: SA1557 COG1609 # Protein_GI_number: 15927313 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 16 329 1 314 314 510 84.0 1e-144 MTVTIYDVAREARVSMATVSRVVNGNQNVKPETRNKVNEVIKRLNYRPNAVARGLASKRT TTVGVIIPDISNVYYSQLARGLEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGI IFLGGTISEEIKSLINQSSVPVVVSGTDGKDDHIASVNIDFKQAAEEATQYLIEKGAKTF SLIGGEYSIKAQDDVLEGLKNVLSQHQLKLDDTLHLSGNESYKSGIKTFEQLQSNLPDAV LCISDEQAIGILHSAQDAGVKVPEDLQIISFNNTRLVEMVRPQLSSVIQPLYDIGAVGMR LLTKYMNDEEIENPNVILPHRIEYRGTTQ >gi|224999878|gb|ACJC01000122.1| GENE 65 76859 - 77950 1279 363 aa, chain - ## HITS:1 COG:SA1558_2 KEGG:ns NR:ns ## COG: SA1558_2 COG2876 # Protein_GI_number: 15927314 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Staphylococcus aureus N315 # 95 363 1 269 269 495 92.0 1e-140 MTNKLEQYREEIVSLNDQILELLSKRGELAQKIGEEKIKQGTRVYDPQREKEMINQLLDK NKGPFNDNVIKQLFKEIFKASTDLQKSENEKHLYVSRKLKPEDTIVKFDNGGIIGDGNKS FVFGPCSVESQEQVDAVAQDLQAKGEKFIRGGAFKPRTSPYDFQGLGVEGLKILKNVKDK YNLNVVSEIVNPNDFEIASDYLDVFQIGARNMQNFELLKEAGRTDKPILLKRGLSATIEE FIYAAEYIASQGNRNIILCERGIRTYEKATRNTLDISAVPILKQGTHLPVMVDVTHSTGR KDIMLPTAKAALAVGADGVMAEVHPDPSVALSDAGQQMDLNEFNQFYHELKPLADMYNSK KLK >gi|224999878|gb|ACJC01000122.1| GENE 66 78385 - 79608 1470 407 aa, chain - ## HITS:1 COG:no KEGG:SE1411 NR:ns ## KEGG: SE1411 # Name: not_defined # Def: smooth muscle caldesmon # Organism: S.epidermidis # Pathway: not_defined # 1 407 20 426 426 408 91.0 1e-112 MKHYNRDNFEKSHTSEELYHRSSRSQSNSLKRKDFVVSFIASAIVGSAVGLYYKNKIYKK TDELKEKEQDLRSKVEDYKQRAEDTMFSVKSKVEQLKNDSKDNIHADELQAQKAAIQRET HLADESPEAQAIQEAKKETKKADGVRPSATELAAQQNAIQRETHLADESPEAQAIQEAKS EVDSNNKTSMTHIDSEKEPSAEEIAIAQTAVKEEVRSHNLANPSASVEDTKSKSETETEK LAAAAKAKRDKINNNNKVASNTKNLMQEESIKHSNNSDVPNLVTNLNQSQASGTNSDAYR LAQAAKEKKSKLTNGSKETQLTESLLKEPSIAKAQTKLKRIPTLITESKQNSNNSHIQKN ANQTKNITATKEDSEGKQQHTPNQNKRNKQQKVEKTSSKIEKRTFND >gi|224999878|gb|ACJC01000122.1| GENE 67 79686 - 80177 598 163 aa, chain - ## HITS:1 COG:SA1560 KEGG:ns NR:ns ## COG: SA1560 COG4768 # Protein_GI_number: 15927316 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Staphylococcus aureus N315 # 1 163 1 163 163 227 93.0 8e-60 MDWILPIAGIIAAIAFLILCIGIVVVLISVKKNLDYVAKTLDGVEGQVQGITRETTDLLH KVNRLTEDIQGKVDRLNSVVDAVKGIGDSVQNLNGSVDRVTNSITHNISQNEDKISQVVQ WSNVAMEIADKWQNRYNRRGSANYKTNTVADDANHSYNSRVNK >gi|224999878|gb|ACJC01000122.1| GENE 68 80252 - 81565 1723 437 aa, chain - ## HITS:1 COG:SA1561 KEGG:ns NR:ns ## COG: SA1561 COG0773 # Protein_GI_number: 15927317 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Staphylococcus aureus N315 # 1 437 1 437 437 743 83.0 0 MTHYHFVGIKGSGMSSLAQIMHDLGHEVQGSDIESYVFTEVALRNKGIKILPFDANNITK EMVVIQGNAFPDNHEEIVKAHELKLDVIKYHDFLGHVINQYTSVAVTGAHGKTSTTGLLS HVMNGDKKTSFLIGDGTGMGLPGSDYFAFEACEYRRHFLSYHPDYAIMTNIDFDHPDYFK NIDDVYDAFQHMALNVKKGIIAWGDDEYLRKLDVDIPVYYYGFKETDDIYAKNIQITEKG TQFDVYIQGEFYDQFLSPQFGNHNILNALAVIAISYLEDMNVENIKEALITFGGVKRRFN ETKVSNQVLVDDYAHHPREISATIETARKKYPQKDVVAVFQPHTFSRTQAFLNEFAESLN KADQVFLCEIFGSIRENTGDLTIKDLINRIDGSTLIDENSIDVLEKFDNAVILFMGAGDI QKLLKAYFEKLGVKNDF >gi|224999878|gb|ACJC01000122.1| GENE 69 81586 - 85095 3716 1169 aa, chain - ## HITS:1 COG:SA1562 KEGG:ns NR:ns ## COG: SA1562 COG1674 # Protein_GI_number: 15927318 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Staphylococcus aureus N315 # 1 1169 1 1274 1274 920 53.0 0 MSWFDKLFGDDNGSNDDLLRKNKNRRQSQQSKQNNQDSLLPQNNDIYSRPRGKFRFPIQV SENEYTQKNESYNEHSQEETNDTMSSYNQHDNLDFVSTGKRHRRRRQAYSKHNQSKITQQ KQFADNNYTNNNSVFNQNDNQKSSQQRKSIQSENIKNKANTKNTSTSPGFTYLNHGFKSS EVPSAIFGTKKRRPIENGVIPPEHKELNDKEIVQKDEVSHSTKSVDASINVSNSNDDNVE KNQQKKQQTTAQTESSSENIHNVEKSNYQTTKRKTPNYSKVDNTINIENIYASQIVEEIR RERERKVLQKRRFKKALQQKRQQNQQSEEDSIQKAIDEMYAKQAQHYTGESSLDLENESN QDSSPNSLEKQTNSSNIDNKEVKNNAPSFNYEEIDLDATTDVYKVNEEETESKIDEDLVS SNHYHSNDDSEVEDAEYHELDDNRQQNQSKSQEDIISSESINSNMDDNAISASVDNDTER AKPNEDKNDTEITHLDETTSAKVSDEKTKSNTNNYLEQDKNVKLKNVNSSKSSNSDTVQT RKQRFGGSRPFNVLMTPSDKKRMMDQKHKKISVPELTPERKANANHRKDRESNKSEEFKQ INTNRKTDSNSNEANGIEHDINSASDHRVHETSSKQHDEQIQKLQDDFHFENPNHAKTNN SNETGNQSNISHSKRAQYSTNESENIDTQTSNSSTSNQNFQRIRKGPNIKLPSYQLLEEP EPHEKDQDWIDNKKQELNDALYYFNVPAEVKNVTEGPSVTRFELSVEKGVKVSRITALQD DIKMALAAKDIRIEAPIPGTSLVGIEVPNQNPTKVNLRSIIESPKFKNTESKLTVAMGYR INNEPLLMDIAKTPHALIAGATGSGKSVCINSILMSLLYKNHPEELRLLLIDPKMVELAP YNDLPHLVSPVITDVKAATQSLKWAVEEMEKRYKLFAQYHVRNITAFNKKAPYEQRMPKI VIVIDELADLMMMAPQDVEQSIARIAQKARACGIHMLVATQRPSVNVITGLIKANIPTRI AFMVSSSVDSRTILDSGGAERLLGYGDMLYLGSGMNKPIRVQGTFVSDDEIDEVVDFIKQ QRDPEYLFEEKELLKKTQTQAQDDLFDDVCEFMVEEGHISTSLIQRHFQIGYNRAARIID QLEQLGYISGANGSKPRDVYITEADLNKE >gi|224999878|gb|ACJC01000122.1| GENE 70 85116 - 85712 612 198 aa, chain - ## HITS:1 COG:SA1563 KEGG:ns NR:ns ## COG: SA1563 COG0073 # Protein_GI_number: 15927319 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Staphylococcus aureus N315 # 1 198 1 198 198 278 77.0 6e-75 MNLFYNPKGVGDVAFIQIEPSVGPFEYEQKQNVVEIKKENKVVGYNIFRVSNNVTINDNG HIKLTTELIKDFQQLITEAGFDYQLDTDVSPKFVVGYVETKEKHPNADKLSVLNVNVGTE KLQIVCGAPNVESGQKVVVAKVGAVMPSGMVIKDAQLRGVDSSGMICSMKELNLPNAPKE KGIMVLNDDYDIGQAFFE >gi|224999878|gb|ACJC01000122.1| GENE 71 85735 - 86589 927 284 aa, chain - ## HITS:1 COG:SA1564 KEGG:ns NR:ns ## COG: SA1564 COG4848 # Protein_GI_number: 15927320 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 284 1 284 285 439 79.0 1e-123 MNVFQMRDKLKARLKQLDAEFKFDREEETLRIVRIDNHKGVTIKLNAIVAKYEEQKEKII DEICYYVEEAIAQMGDEEINNVEDIQIMPVIRATSFDKETKEGHAFVLTEHTAETNIYYA LDLGKSYRLIDENMLQTLNLTAQQVKEMSLFNVRKLECRYSTDEVKGNIFYFINTNDGYD ASRILNTSFLNHIQHQCEGEMLVGVPHQDVLILADIRNKTGYDVMAHLTMEFFTKGLVPI TSLSFGYDNGHLEPIFILGKNNKQKRDPNVIQRLEANRKKFKKD >gi|224999878|gb|ACJC01000122.1| GENE 72 86727 - 87038 470 103 aa, chain - ## HITS:1 COG:SA1565 KEGG:ns NR:ns ## COG: SA1565 COG0526 # Protein_GI_number: 15927321 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 103 1 103 103 156 71.0 7e-39 MIKLESEQQFEELKKGYTVFEFTAEWCPDCKVIEPDLPKLEKKYSQLQFVSVDRDQFIDI CVQNDILGIPSFLIFKEGQLLGSYIGKERKSIDQIDQFLSQHI >gi|224999878|gb|ACJC01000122.1| GENE 73 87044 - 88129 1255 361 aa, chain - ## HITS:1 COG:SA1566 KEGG:ns NR:ns ## COG: SA1566 COG1363 # Protein_GI_number: 15927322 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Staphylococcus aureus N315 # 1 357 1 357 358 574 76.0 1e-164 MTIDNSKTLERIKILTELHGAPGFEDEVRSYMKSEMEPFVDKFIQNKMGGFYGIKKSNKE NAPRVMIAAHMDEIGFMITHINDNGMIQFTNLGGVANDIWQGQRLKIKNRCGKEIIGVVA NIPKHFRTGNESIPQIKDLMLDIGASSSEEVRNRGVEVGDTIVPHTIMTQLSNNRYSAKA WDNRYGCVLAIEILELLKDVQLDVDLYVGANVQEEVGLRGAKAAAKQINPDIAFVVDCSP ANDIKGKQQLSGMLGEGTLIRIKDGTMILKPIFRDYLLKLAQENQIAYQYYISPGGTDGG EIHKANEGIPTAIIGVCARYIHSTDAVFDIRDYFAARHLLKESIIHLTSEQIQQLQYGKE I >gi|224999878|gb|ACJC01000122.1| GENE 74 88214 - 88528 251 104 aa, chain + ## HITS:1 COG:SA1567 KEGG:ns NR:ns ## COG: SA1567 COG5584 # Protein_GI_number: 15927323 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Staphylococcus aureus N315 # 31 103 30 102 103 76 53.0 1e-14 MKSVNFKKITILFFSTAFLILIFSLIFLTKKKLYNAELLLNEVKTYFREVKGSYIVQEPI VLENINQNQPIYQGGITVLKNDHLINYEFYADAVSGQIIDIIEL >gi|224999878|gb|ACJC01000122.1| GENE 75 88688 - 89335 762 215 aa, chain - ## HITS:1 COG:SA1569 KEGG:ns NR:ns ## COG: SA1569 COG0220 # Protein_GI_number: 15927325 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Staphylococcus aureus N315 # 1 211 1 211 214 361 82.0 1e-100 MRVRYKPWAEDYLKNHPDLVDMDGAHAGKMSEWFEKEQPIYIEIGSGMGQFITTLAAQYP EINFVSMEREKSVMYKVLDKTKEMGLKNLKMICNDAIELNEYFQDNEISRIYLNFSDPWP KKRHAKRRLTYHTYLALYKQILKDDGEIHFKTDNRGLFAFSIESMSQFGMYFTKMNLNLH DEDDEDNIVTEYEKKFSEKGSRIYRMEAKFHKCFE >gi|224999878|gb|ACJC01000122.1| GENE 76 89349 - 90140 662 263 aa, chain - ## HITS:1 COG:SA1570 KEGG:ns NR:ns ## COG: SA1570 COG0510 # Protein_GI_number: 15927326 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Staphylococcus aureus N315 # 1 263 1 263 263 481 90.0 1e-136 MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIE TGEVVTAQHWKNGRELNEDEMNQTRVAELLHKIHGSRPLLTMLKRMEMEPITPEIMLNKI NASLSREVLTHHVVRRALTYLEDHIPNLDARFFTVVHGDVNHNNWLLSDRDELYLVDWEG AMIADPAIDIGMLLYNYVPQNKWSQWFKTYGVEESVNLNKRMKWYTVIQAIGLIQWYEEQ KRYKDMNTWLKFLNEVMNSNLFI >gi|224999878|gb|ACJC01000122.1| GENE 77 90527 - 91375 949 282 aa, chain - ## HITS:1 COG:SA1571 KEGG:ns NR:ns ## COG: SA1571 COG0115 # Protein_GI_number: 15927327 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Staphylococcus aureus N315 # 1 282 1 282 282 436 76.0 1e-122 MTKVFINGEFVNEEDAKVSYEDRGYVFGDGIYEYIRAYDGKLFTVKEHFERFLRSAEEIG LDLNFTIEELIELVRRLLKENNVVNGGVYIQATRGAAPRNHSFPTPPVKPVIMAFTKSYD RPYEELEQGVYAITTEDIRWLRCDIKSLNLLGNVLAKEYAVKYNAAEAIQHRSDIVTEGA SSNVYAIKDGVIYTHPVNNFILNGITRRVIKWIAEDEQIPFKEETFTVEFLKNADEVIIS STSAEVMPITKIDGENVKDGQVGTITRQLQQGFEKYIQSHSI >gi|224999878|gb|ACJC01000122.1| GENE 78 91379 - 92788 1495 469 aa, chain - ## HITS:1 COG:SA1572 KEGG:ns NR:ns ## COG: SA1572 COG0624 # Protein_GI_number: 15927328 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Staphylococcus aureus N315 # 1 469 1 469 469 811 82.0 0 MWKEKVLEYENQMIEDLKGLLSIESIRDDSKATADAPVGPGPREALDYMYKLGKRDGFST HDVDHIAGRIEAGKGKDVLGILCHVDVVPAGDGWDSNPFQPVVTDNAIIARGTLDDKGPT IAAYYAVKILNEMKVDWKKRIHIIIGTDEESDWKCTDRYFKTEEMPALGFAPDAEFPAIH GEKGITTFDLVQNEVTEDTDEPDYELLKFESGQRYNMVPDYAKAEVLVKENMTDVIQNFE NFLQQNQLQGESTVDSGILILTVEGKAVHGMDPSLGVNAGLFLLKFLASLNLNKSAKDFV EFNERYLFESHFGEKMGMKFHTDIMGDVTTNIGVISYDKEKAGRYGVNLRYPEGFKFEDA IERFRSEINELGFSLELGKVQKPHYVDKNDPFVKTLVNAYRNQTGDMTEPYTIGGGTYAR NLDKGVAFGAMFADSEDLMHQKNEYITKKQLINATSIYLEAIYALCVED >gi|224999878|gb|ACJC01000122.1| GENE 79 93091 - 93519 717 142 aa, chain - ## HITS:1 COG:no KEGG:SERP1311 NR:ns ## KEGG: SERP1311 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 142 1 142 142 186 97.0 2e-46 MGKSTNLFKVALGIGGAITAVALSRKESRDKLKQEYNKYKEDPELYKSSAKDLATQISNK ANETIQEVKKNPKDYVERIKSNPKEFLEEEKSKIIGKNDQTQDDIEEGKFDAEGGATANN NLRVVTEDDLKNNKNALQDKKE >gi|224999878|gb|ACJC01000122.1| GENE 80 93537 - 94229 531 230 aa, chain - ## HITS:1 COG:SA1574 KEGG:ns NR:ns ## COG: SA1574 COG1187 # Protein_GI_number: 15927330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Staphylococcus aureus N315 # 1 228 1 228 231 316 73.0 3e-86 MRLDKFLANMGVGTRSEVKQLLKKGAVKVNQNKVKSPKLHVNPNSDEIMVNDEVVSYIDK VYIMLNKPKGYISATEDELHPTIIDLIPEYAHLNIFPVGRLDKDTEGLLLVTNDGQFNHE VMNPNKHVSKTYEVYSKHPITQFDIDEFKSGIELSDGKLKPAILKKVDDYVSHVTIYEGK YHQVKRMFHSIENEVLELKRIKIAELELDHNLDLGSYRLLTQLDFDNLKN >gi|224999878|gb|ACJC01000122.1| GENE 81 94226 - 95887 1460 553 aa, chain - ## HITS:1 COG:SA1575 KEGG:ns NR:ns ## COG: SA1575 COG2244 # Protein_GI_number: 15927331 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 1 553 1 553 553 841 84.0 0 MSESKEMVRGTFLITISILITKVLGVLFIIPFTALIGGQANMAPFTYAYAPYNIAIAIAT AGVPLAASKYVAKYNALGAYKVSQKFYKSSFVVMSITGIVGFLVLYLLAPYIAELTLSRN THGKNGWTVADITWIIRIISMVVIFIPVLATWRGIFQGYKSMGPTAVSEVTEQIARIVFI LVGSYLTLNVFGGTVLQANGIATFAAAIGAIAGILTLWYYWIKRRNNIKKMVDSDTANLN VSYGKMYKEIIAYSIPFVIVSLNFPLFNLVDQFTHNGALNLVGVKPGLQDIFFNMLNMST NKIVMIPTSLSAGFAVSLIPFITKTYEEGRYAEMHRQIRTSIGVLMFITVPASIGIMALA QPLFTVFYGFDPVVHGHDPNFDGSRLLFYYAPVAILISLLSVTASMLQGIDKQKLTVFVI LGSVLIKLILNYPLIMLLHTPGAVLSTAIALLFAICCNFYILKKYANFKFSYSWIHLAKI ILISIIMMIGVEVIFFILRLFLEPTRFNYLIIVAIGVIVGAIIYGGITIKTRLADEFLGD IPTKIRRKVKILR >gi|224999878|gb|ACJC01000122.1| GENE 82 96159 - 97421 1193 420 aa, chain + ## HITS:1 COG:SA1576 KEGG:ns NR:ns ## COG: SA1576 COG2081 # Protein_GI_number: 15927332 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Staphylococcus aureus N315 # 1 414 1 416 422 637 78.0 0 MYQTIVIGGGPSGAMAAVAASEKNESVLLIEKKKGLGRKLKISGGGRCNVTNRLPYDEII KNIPGNGKFLYSPFSVFDNLSIINFFETRGVKLKEEDHGRMFPVSNKSQDVVDVLINQLK ENHVEIKEETPVVSVSYDHNFKVKTQIGEFESHSLIIATGGTSVPQTGSTGDGYKFAKSL GHSITELFPTEVPITSSETFIKSNRLKGLSLKDVNLSVLKKNGKKRVSHQMDMIFTHFGI SGPAALRCSQFVYKEQKNQKKKNIHMQLDVFPELNVDQLSQKVRKILKAEPDKYIKNSLR GIIEERYLLFILEQSGINDEMTAHHLSNQQFQTFVNLLKTFTFTVDGTLPLDKAFVTGGG ISLKEIEPKTMMSKLVPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGLFAGEFKIDKNK >gi|224999878|gb|ACJC01000122.1| GENE 83 97889 - 107005 11141 3038 aa, chain - ## HITS:1 COG:no KEGG:SE1429 NR:ns ## KEGG: SE1429 # Name: not_defined # Def: FmtB protein # Organism: S.epidermidis # Pathway: not_defined # 1 3038 655 3692 3692 3462 95.0 0 KDTLVDQIENHKNEISNNIDDELTDDGVERVKEAGLHTLESDTPHPVTKPNARQVVNNKA EQQKTLIRNNHEATTEEQNEAISQVEAHSSDAIAKIGEAETDTTVNEARDNGTRLIATDI PNPTKKAEAREAVTNSANSKIKNINNNTQATLDERNDAITLVNRSKDEAIQNINTAQGND DVTEAQNNGTNTIQQVPLTPVKRQNAIATINAKADEQKRLIQANNNATTEEKADAERKVN EALLTATQNISNAPTNRDVDQAQTMGSGIISTISPATKIKEDARVAVEAKAIAQNQQINS NNMATTEEKQDALNQVEAHKQATIANINQAQSTQQVSEAKNNGINTINQDQPNAVKKNNT KTLLEQKGNEKKSAIAQTPDATTEEKQEAVSVVSQAVTNGNNHINQANSNDDVDQALSNA EQIITHTDVNVQKKPQARQALIAKVNEKQSAINTDNEGTIEEKQKAIQSLNDAKNSADEQ ITQAASNQNVDNALNIGISNISKIQTNFTKKQQARDQVNQKFQEKEAELNSTPHATQDEK QDALTRLTQVKESTLNDINQAQTNQNVDTALNNGIQNIQNIQVDVRKKQEARTTINDIVQ QHKQTIQNNDDATTEEKEVANNLVNVSQQNVISKIDNATTNNQIDGIVSDGRQTINAITP DTSIKRNAKNDIEGKAADRKIKIQRINDATAEEIQEANRKIEEAKIEAKDNIQHSSTRDQ VNEAKTNGINKIENITPATTVKSEARQAVQNKANEQINHIQNTPDATNEEKQEAINRVSA ELARVQAQINAEHTTQGVKNIKDDAITSLSRINAQVVEKESARNAIEQKSTQQTQFINDN DNATDEEKEVANNLVIARKQNALDNINSLSSNSDIENAKVTGINEIAKVLPATSVKSKAK KDIDQKLAQQINQIQTHQTATIEEKEAAIQLANQKANEARTAIQNEHSNNGVAQAKSNGI HEIELVTPDAHKKSDAKQSIDDKYNEQSNTINTTPDATDEEKQKALDKLKIAKDAGYNKV DQAQTNQQVSDAKTEAIDTITNIQANVAKKPSARMELDSKFEDLKRQINATPNATEEEKQ DAIQRLNVKREEVKNLINQDRRDNDVEQHKNTGLQELETIHANPTRKSDALQELQTKFIS QTELINNNKDATNEEKAEAKRLLEISKNKTITNINQAQTNNQVDNAKDNGMNEIATIIPA TTIKTDAKTAIDKKAEQQVTIINGNNDATDEEKAEARKLVEKAKTEVKSNITNSDTEREV NSAKTNGLEKINNIQPSTQTKTNAKQEINDKAQEQLIQINNTPDATEEEKQEATNRVNAG LAQSIQNINNAHSTQEVNESKTHSIATIKSILPNVIKKPTAINDLTQEANNQKTLIGNDG NATDDEKEAAKQLVTQKLNEEIQKIHESTQDNQVDNVKAQAITAIKLINANAHKRQDAIN ILTNLAESKKSDIRANQDATTEEKNTAIQSIDDTLAQARNNINGANTNALVDENLEDGKQ KLQRIVLSTQTKTQAKADIAQAIGQQRSTIDQNQNATTEEKQEALERLNQDTNGVNDRIQ AALANQNVTDEKNNILETIRNVEPIVVVKPKANEIIRKKAAEQTTLINQNQDATLEEKQI ALGKLEEVKNEALNQVSQAHSNNDVKIAENNGIAKISEVHPETSIKRNAKQEIEQVAQSQ IDTINANNKSTNEEKSAAIDRVNVAKIDAINNIANATTTQLVNDAKNNGNTSITQILPST AVKTNALAALATDAKNKNAIIDQTPNATAEEKEEANNKVDRLQEEADANILKAHTTEEVN NIKNQAVQNINAVQVEVIKKQNVKNQLNQFVDNQKKIIENTPDATLEEKAEANRLLQNVL TSASDEIANVVHNNEVDQALDKARPKIEAIVPQVSKKRDALNAIQEAFNSQTQEIQENQE ATNEEKTEALNKINQLLNQAKVNIDQAQSNKDVDNAKTRSIQDIEQIQAHPQTKETGRHR LNEKANQQQSTIATHPNSTIEERQEASAKLQEVLKKAIAKIDKGQTNDDVEKTVVNGIAE IENILPATTVKDKAKADVNAEKEQKNIQINSNDEATTEEKLVASDNLNHVVETTNQAIED APDTNQVNVEKNKGIGTIRDIQPLVVKKPTAKSKIESAVEKKKTEINQTQNATDDEVREG LNQLNQIHEKAKNDVNQSQTNQQVENAEQNSLDQINNFRPDFSKKRNAVAEIVKAQQNKI DEIEQEFSATQEEKDNALQHLDEQVKEIINSINRANTDNEVDNAKTSGLNNINEYRPEYN KKKNAILKLYDVSDTQEAIINGYPDATEDELQEANSKLNKILLDAKKQIGLAHTNNEVDD IYNEVSQKMKTILPRVDTKAVARSVLNALAKQLIKTFENTPDVTHEERNDAINHVKEQLS LVFNAIEKDQKDIQVAQDELFGLNELNSIFINITQKPTARKAISDKASQLNNSINNTPYA TEEERQIALNKVKAIVEDANEKIREANTDSEVLGTKSNAITLLQAISADVQVKPQAFEEI NAQAEIQRERINGNSDATREEKEEALKQVDTLVNKSFITINNVNKNQEVYDTKNKTIEAI HKIKPITIIKPQALNEITNQLDAQRDLIKNNNESTLEEKASAIDKLIKTAARIAEAIDKA QTNEDVKNIKKQSIDEVSKILPVIEIKLAARNEIHQKAEVIRGLINNNEEATKEEKDVAL NQLDTTLTQANLSIDQALTNEAVNRAKEIATSEINKISVITIKKPEAIAEIQELADKKLN KFKQNQEATIEEKQSAINELDQALKSAINHIHQSQNNESVSAALKESISLIDSIEIQAHK KLEAKAYIDGYSDDKINDISSRATNEEKQIFVSKLKALINRAHKQIDEAETFVSVDTIVR NFKVEVDKLNSIVRKKAKALKEIELEADHVKQMINANLSASTRVKQNARTLINEIVSNAL SQLNKVTTNKEVDELVNETIEKLKSIQLREDKILSSQRSTTSMTEKSNQCYSSENNTIKS LPETGNVDKSVPLAGVTLISGLAIMSSRKKKKDKKVND Prediction of potential genes in microbial genomes Time: Sun May 29 07:49:18 2011 Seq name: gi|224999877|gb|ACJC01000123.1| Staphylococcus epidermidis W23144 contig00163, whole genome shotgun sequence Length of sequence - 2292 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 1960 1968 ## SE1429 FmtB protein - Prom 2191 - 2250 8.6 Predicted protein(s) >gi|224999877|gb|ACJC01000123.1| GENE 1 1 - 1960 1968 653 aa, chain - ## HITS:1 COG:no KEGG:SE1429 NR:ns ## KEGG: SE1429 # Name: not_defined # Def: FmtB protein # Organism: S.epidermidis # Pathway: not_defined # 1 653 1 653 3692 1012 96.0 0 MNLFRKQKFSIRKFNIGIFSALIATVAFLAHPGQATASELEPSQNNDTTAQSDGGLENTF QSNPISDETTNTLSEQTVPSSTENKQTQNDPHHNNQPIAINAEEAESAQTPPYTNIYENN DTSDNGLHVNQPVKHHIEAQSEDVTNHTNSNHSNSSIPENKATTESSSKPKKRGKRSLDT NSGNDATSTTQNTDPNLSNTGPNSINTVITFDDLGIKTSTNRSRPEVKVVDSLNGFTMVN GGKVGLLNSVLERTSVFDSADPKNYQAVDNVVALGRIKGNDPNDHDGFNGIEKEFSVNPN SEIIFSFNTMTAKNRKGGTQLVLRNAENNQEIASTDIQGGGVYRLFKLPDNVHRLKVQFL PMNEIHSDFKRTQQLHDGYRYYSFIDTIGVNSGSHLYVKSRQVNKNVKNGKEFEVNTRIE NNGNFAAAIGQNELTYKVTLPDNFEYVDNSTEVSFVNGNVPNSTVNPFSVNFDRQNHTLT FSSNGLNLGRSAQDVARFLPNKILNIRYKLRPVNISTPREVTFNEAIKYKTFSEYYINTN DNTVTGQQTPFSINVIMNKDDLSEQVNKDIIPSNYTLASYNKYNKLKERAQTVLDEETNN TPFNQRYSQTQIDDLLHELLTTLISRVSASREINDKAQEMTDGVYDSTELTTE Prediction of potential genes in microbial genomes Time: Sun May 29 07:49:42 2011 Seq name: gi|224999876|gb|ACJC01000124.1| Staphylococcus epidermidis W23144 contig00164, whole genome shotgun sequence Length of sequence - 55561 bp Number of predicted genes - 55, with homology - 53 Number of transcription units - 36, operones - 14 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.357 - CDS 72 - 383 506 ## COG0607 Rhodanese-related sulfurtransferase 2 1 Op 2 2/0.357 - CDS 409 - 2823 2563 ## COG0495 Leucyl-tRNA synthetase - Prom 2923 - 2982 6.4 3 2 Tu 1 . - CDS 3115 - 4329 1155 ## COG0477 Permeases of the major facilitator superfamily - Prom 4383 - 4442 6.8 + Prom 4301 - 4360 7.3 4 3 Op 1 6/0.000 + CDS 4436 - 5389 952 ## COG1242 Predicted Fe-S oxidoreductase 5 3 Op 2 . + CDS 5386 - 5949 575 ## COG0500 SAM-dependent methyltransferases + Term 6004 - 6052 6.1 - Term 5990 - 6038 9.1 6 4 Tu 1 . - CDS 6216 - 6626 454 ## COG1846 Transcriptional regulators - Prom 6678 - 6737 9.4 - Term 6975 - 7026 9.3 7 5 Tu 1 . - CDS 7108 - 7935 791 ## COG2267 Lysophospholipase - Prom 7967 - 8026 10.3 + Prom 7924 - 7983 7.8 8 6 Tu 1 . + CDS 8178 - 9179 1023 ## COG0506 Proline dehydrogenase + Term 9182 - 9233 11.3 - Term 9170 - 9221 11.3 9 7 Op 1 18/0.000 - CDS 9226 - 9687 715 ## COG0054 Riboflavin synthase beta-chain 10 7 Op 2 15/0.000 - CDS 9700 - 10881 1377 ## COG0807 GTP cyclohydrolase II 11 7 Op 3 16/0.000 - CDS 10894 - 11526 644 ## COG0307 Riboflavin synthase alpha chain 12 7 Op 4 1/0.857 - CDS 11533 - 12564 784 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis - Prom 12666 - 12725 8.3 13 8 Tu 1 . - CDS 13014 - 14498 1319 ## COG4529 Uncharacterized protein conserved in bacteria - Term 14682 - 14719 1.2 14 9 Tu 1 . - CDS 14847 - 15698 866 ## COG4193 Beta- N-acetylglucosaminidase - Prom 15862 - 15921 8.2 15 10 Tu 1 . - CDS 16077 - 16292 263 ## SERP1331 hypothetical protein - Prom 16528 - 16587 10.8 + Prom 16399 - 16458 2.2 16 11 Op 1 . + CDS 16499 - 16978 415 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 17 11 Op 2 . + CDS 16984 - 17427 242 ## SERP1334 hypothetical protein - Term 17363 - 17391 -0.0 18 12 Tu 1 . - CDS 17414 - 17857 389 ## SERP1335 hypothetical protein - Prom 17890 - 17949 7.0 - Term 17937 - 17985 6.2 19 13 Tu 1 . - CDS 17997 - 18710 880 ## COG0176 Transaldolase - Prom 18889 - 18948 8.5 + Prom 18859 - 18918 7.5 20 14 Op 1 . + CDS 18987 - 19295 153 ## SERP1337 hypothetical protein 21 14 Op 2 11/0.000 + CDS 19332 - 19697 362 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 22 14 Op 3 . + CDS 19694 - 20047 295 ## COG0239 Integral membrane protein possibly involved in chromosome condensation + Term 20247 - 20300 12.1 - Term 20234 - 20287 12.1 23 15 Op 1 . - CDS 20296 - 21132 852 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 21188 - 21247 4.4 - Term 21216 - 21267 11.4 24 15 Op 2 . - CDS 21313 - 22221 941 ## SE1457 hypothetical protein - Prom 22251 - 22310 15.6 25 16 Tu 1 . - CDS 22324 - 23523 1564 ## COG0192 S-adenosylmethionine synthetase - Prom 23586 - 23645 3.8 + Prom 23793 - 23852 7.6 26 17 Tu 1 . + CDS 23893 - 25485 1460 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) - Term 25456 - 25496 5.2 27 18 Op 1 1/0.857 - CDS 25547 - 26308 590 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases 28 18 Op 2 . - CDS 26319 - 26786 253 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 26809 - 26868 5.6 + Prom 26679 - 26738 6.6 29 19 Tu 1 . + CDS 26854 - 27105 255 ## COG0759 Uncharacterized conserved protein + Term 27136 - 27174 4.0 30 20 Op 1 4/0.143 - CDS 27102 - 28103 882 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 31 20 Op 2 . - CDS 28093 - 29517 1053 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II - Prom 29542 - 29601 7.8 + Prom 29498 - 29557 6.8 32 21 Tu 1 . + CDS 29616 - 29846 130 ## + Term 29856 - 29913 5.3 + Prom 30661 - 30720 2.9 33 22 Tu 1 . + CDS 30765 - 31430 581 ## SE1466 hypothetical protein + Term 31437 - 31469 2.1 - TRNA 32343 - 32431 55.1 # Ser GGA 0 0 - TRNA 32485 - 32556 68.6 # Glu TTC 0 0 + Prom 32389 - 32448 2.8 34 23 Tu 1 . + CDS 32557 - 32790 86 ## - TRNA 32558 - 32632 85.4 # Asn GTT 0 0 - TRNA 32642 - 32715 75.7 # Gly TCC 0 0 - TRNA 32733 - 32808 75.9 # His GTG 0 0 - TRNA 32822 - 32894 76.4 # Phe GAA 0 0 - TRNA 32905 - 32980 83.3 # Asp GTC 0 0 - TRNA 32995 - 33068 75.9 # Met CAT 0 0 - Term 33158 - 33202 -0.0 35 24 Tu 1 . - CDS 33383 - 33937 722 ## COG3545 Predicted esterase of the alpha/beta hydrolase fold - Prom 33994 - 34053 6.4 36 25 Tu 1 4/0.143 - CDS 34073 - 35458 1588 ## COG1232 Protoporphyrinogen oxidase - Prom 35532 - 35591 6.4 - Term 35537 - 35576 6.4 37 26 Op 1 9/0.000 - CDS 35609 - 36532 956 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 38 26 Op 2 . - CDS 36609 - 37688 1069 ## COG0407 Uroporphyrinogen-III decarboxylase - Prom 37924 - 37983 10.1 + Prom 37882 - 37941 9.4 39 27 Tu 1 . + CDS 37962 - 38465 563 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides + Term 38636 - 38693 10.1 - Term 38824 - 38866 7.2 40 28 Op 1 . - CDS 38901 - 39518 616 ## COG4300 Predicted permease, cadmium resistance protein 41 28 Op 2 7/0.000 - CDS 39577 - 40800 768 ## COG4473 Predicted ABC-type exoprotein transport system, permease component 42 28 Op 3 . - CDS 40793 - 41533 262 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 41723 - 41782 7.7 + Prom 41462 - 41521 6.7 43 29 Op 1 2/0.357 + CDS 41663 - 42088 527 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 44 29 Op 2 . + CDS 42165 - 42536 592 ## COG4980 Gas vesicle protein + Term 42544 - 42575 1.0 + Prom 42545 - 42604 3.8 45 30 Tu 1 . + CDS 42702 - 43262 435 ## SERP1375 hypothetical protein + Term 43357 - 43405 1.3 + Prom 43276 - 43335 9.2 46 31 Tu 1 . + CDS 43464 - 44441 1260 ## COG0760 Parvulin-like peptidyl-prolyl isomerase + Term 44521 - 44586 10.2 - Term 44782 - 44838 7.0 47 32 Op 1 3/0.143 - CDS 44865 - 45806 999 ## COG3481 Predicted HD-superfamily hydrolase 48 32 Op 2 5/0.143 - CDS 45803 - 48742 3062 ## COG4717 Uncharacterized conserved protein 49 32 Op 3 2/0.357 - CDS 48732 - 49928 1098 ## COG0420 DNA repair exonuclease - Prom 49974 - 50033 10.5 - Term 50131 - 50173 6.9 50 33 Op 1 4/0.143 - CDS 50200 - 50544 622 ## COG3679 Uncharacterized conserved protein 51 33 Op 2 1/0.857 - CDS 50617 - 51747 993 ## COG4399 Uncharacterized protein conserved in bacteria - Prom 51784 - 51843 7.4 - Term 51799 - 51841 4.6 52 34 Tu 1 . - CDS 51930 - 52394 314 ## COG1476 Predicted transcriptional regulators - Prom 52542 - 52601 9.9 53 35 Op 1 7/0.000 - CDS 52666 - 53289 676 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 54 35 Op 2 . - CDS 53282 - 54415 770 ## COG2203 FOG: GAF domain - Prom 54594 - 54653 8.6 + Prom 54495 - 54554 6.4 55 36 Tu 1 . + CDS 54574 - 55398 406 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit Predicted protein(s) >gi|224999876|gb|ACJC01000124.1| GENE 1 72 - 383 506 103 aa, chain - ## HITS:1 COG:SA1578 KEGG:ns NR:ns ## COG: SA1578 COG0607 # Protein_GI_number: 15927334 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 103 1 103 103 139 70.0 2e-33 MESITVDELKKKILDSNPVNIVDVRTNEETEMGVIPGAKTIPMDEIPDNLKEFNKNDTYY IVCAAGSRSAKVVSYLEEQGVHAVNVEGGMNAWGDEGTVIDNI >gi|224999876|gb|ACJC01000124.1| GENE 2 409 - 2823 2563 804 aa, chain - ## HITS:1 COG:SA1579 KEGG:ns NR:ns ## COG: SA1579 COG0495 # Protein_GI_number: 15927335 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 804 1 804 804 1429 88.0 0 MNYNHKEIEKKWQNYWEENKTFKTNDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDI ISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTQKNIQTFKRQIQELGFSYDW DREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVVDGVSERGGH PVYRKPMKQWVLKITEYADRLLEDLDELDWPESIKDMQRNWIGRSEGAKVTFKIEKSDQN IEVFTTRPDTIYGTSFLVLSPEHPLVNEITTSDKEQEVKMYQNEASKKSDLERTDLAKEK TGVFTGAFAINPLSGDKLPIWIADYVLSTYGTGAVMAVPGHDERDHEFATKFNLPIIEVI EGGEVQKNAYTGEGKHINSGELDGLENEAAISKAIELLESKGAGEKKVNYKLRDWLFSRQ RYWGEPIPIIHWEDGSMTTVPEDELPLLLPETDEIKPSGTGESPLANIDAFVNVIDEKTG MKGRRETNTMPQWAGSCWYYLRYIDPHNEKMIADPEKLKHWLPVDLYIGGVEHAVLHLLY ARFWHKVLYDLGVVPTKEPFQKLYNQGMILGEGNEKMSKSKGNVINPDDIVASHGADTLR LYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLIITDENSINKKIVDSNDHSLDKVYNQT VKKVTEDFDTLSFNTAISQLMVFINECYKTNEVYKPYIEGFVKMLAPIAPHIGEELWDRL GHENTITYQPWPTFDESLLVDDEVEIVVQVNGKVRAKINIPKDLSKEEMQNLALSNDNVK MSIEGKEVKKVIAVPQKLVNIVAK >gi|224999876|gb|ACJC01000124.1| GENE 3 3115 - 4329 1155 404 aa, chain - ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 368 1 368 393 587 84.0 1e-167 MNIPKSVWWLVIGMALNITGASFLWPLNTIFMKEELHKSLTIAGIVLMINSFGMVVGNLL GGSLFDKLGGYKTILIGTFTCLCSTTLLNLFHGWPWYAIWLVLLGFGGGMIVPAIYAMAG AVWPNGGRQTFNAIYLAQNIGVALGAALGGFVAEFSFNYIFMANLIMYVLFAIVAITQFN LEINAKFKPQDSIDLKSKENKKRFTAMMLVCAMFAICWIAYIQWETTIASFTQSINISMS QYSVLWTINGIMILVAQPLIRPIIILLKGNLKHQMFVGILIFMSSFLVTSFANHFAIFVV GMVILTFGEMFVWPAVPTIANQLAPVGKQGQYQGFVNSASTVGKAFGPFIGGILVDTFNM SMMFIGMIILLSFALLFLSFYDKVLPKNLKNQHQSRGRRNQNGV >gi|224999876|gb|ACJC01000124.1| GENE 4 4436 - 5389 952 317 aa, chain + ## HITS:1 COG:SA1581 KEGG:ns NR:ns ## COG: SA1581 COG1242 # Protein_GI_number: 15927337 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Staphylococcus aureus N315 # 1 316 1 316 317 602 87.0 1e-172 MGNYFPYAFEDKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGS GDFAGNRAEPIEVQFKKIKERMHEKWSEGQYIAYFQAFTNTHAPVEVLKEKYEPVLKEDG VVGLSIATRPDCLPDDVVEYLAELNQRTYLWVELGLQTVHQSTSDLINRAHDMQTYYDGV TKLRKHDINVCTHIINGLPGENYDMMMETAKEVAQMDVQGIKIHLLHLLKGTPMVKQYEK GMLEFMSQQDYTNLVCDQLEVLPPEMIVHRITGDGPIDLMVGPMWSVNKWEVLNEIDNEL ARRNSYQGKMNKQSIQS >gi|224999876|gb|ACJC01000124.1| GENE 5 5386 - 5949 575 187 aa, chain + ## HITS:1 COG:SA1582 KEGG:ns NR:ns ## COG: SA1582 COG0500 # Protein_GI_number: 15927338 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Staphylococcus aureus N315 # 1 185 1 185 187 241 65.0 4e-64 MKLERILPFAKSLIDSHINHNSIVIDATCGNGNDTAYFAQHVPNGFVYGFDIQEQAILNT HKKIKDYSNVKLIQSGHENAKLHIPAQYHGHIDAAIFNLGYLPKGNKEIVTKPETTIMAI NEIFDILSIEGIIILVIYHGHEEGKVEKEALLEFLQNFDQNKAHILQYQFINQKNNAPFI YAIEKRN >gi|224999876|gb|ACJC01000124.1| GENE 6 6216 - 6626 454 136 aa, chain - ## HITS:1 COG:SA1583 KEGG:ns NR:ns ## COG: SA1583 COG1846 # Protein_GI_number: 15927339 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 136 18 153 153 158 63.0 3e-39 MLILANSEKNRVYGILQLETLFKEIDSIFNTIKEEYGMSKEEILILLTLLEKGSMTLKEM DKYVHIKPYKRTRTYNNLVNLEWIYKERPQDDERTVIIHFNDKQNSKKEDLLEFIDDSIK IKSEPMQSSLQSILAV >gi|224999876|gb|ACJC01000124.1| GENE 7 7108 - 7935 791 275 aa, chain - ## HITS:1 COG:SA1584 KEGG:ns NR:ns ## COG: SA1584 COG2267 # Protein_GI_number: 15927340 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Staphylococcus aureus N315 # 1 275 1 275 275 398 76.0 1e-111 MWKWETENDAKGVVVIAHNILEHTGRYAYVITMLRRNGYHVIMGDLPGQGQTSRAQKGQI DDFNTYHENILEWIKIANEYKIPTFVLGVGLGGLIILNLLEKTELPIEGILLFSPMLELK KDYKGRKNKLISNVGKISKDTRFKVGITPHDLTRNDEIIEETANDGLMLKKVTYSWYNLI NEKMKETMDHIRDIKPISALIMYGTKDKILETQSINEMKDKLKSKEMYFKVWDGLYHEIH NEPERDLVMRYVLSFLNNSVNTMGFIVNEEEIEDI >gi|224999876|gb|ACJC01000124.1| GENE 8 8178 - 9179 1023 333 aa, chain + ## HITS:1 COG:SA1585 KEGG:ns NR:ns ## COG: SA1585 COG0506 # Protein_GI_number: 15927341 # Func_class: E Amino acid transport and metabolism # Function: Proline dehydrogenase # Organism: Staphylococcus aureus N315 # 1 333 1 329 333 454 69.0 1e-128 MSLFKDFFIALSNHTYLNKIAKKMGPQMGANRVVAGNTIHQLIETIQYLNDYNISVTVDS LGEFVSTREESIKAKEEILEIIDAIYNNNVKAHMSVKISQLGSEFDLNLAYENMREILLK ADKNGKMHINIDTEKYDSLSKIQHIIDRLKGEFKNVGTVVQAYLYEADDLIDKYPELRLR LVKGAYKEDASIAYQSKEEIDANYIRIIKKRLLNSKNFTSVATHDNEIINQVKQFMKENH ISKDKMEFQMLYGFRTELAQKIANEGYLFTVYVPYGNDWFAYFMRRLAERPQNLSLAIKE FTKPKILKKLTLGIGIFATLLTSFILGIQRYKK >gi|224999876|gb|ACJC01000124.1| GENE 9 9226 - 9687 715 153 aa, chain - ## HITS:1 COG:SA1586 KEGG:ns NR:ns ## COG: SA1586 COG0054 # Protein_GI_number: 15927342 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Staphylococcus aureus N315 # 1 152 1 152 154 249 86.0 1e-66 MNFEGKLVGKDLKIAIVVSRFNDFITTRLLEGAKDTLIRHEVVDTNIDVAYVPGAFEIPL VAKKLAQKGEYDAVITLGCVIRGATSHYDYVCNEVAKGVSKANDISDTPVIFGVLTTESI EQAVERAGTKAGNKGSEAAVSAIEMANLIKQIN >gi|224999876|gb|ACJC01000124.1| GENE 10 9700 - 10881 1377 393 aa, chain - ## HITS:1 COG:SA1587_2 KEGG:ns NR:ns ## COG: SA1587_2 COG0807 # Protein_GI_number: 15927343 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Staphylococcus aureus N315 # 205 393 1 189 189 319 79.0 5e-87 MQFDTIELAIEALRNGESIIVVDDEDRENEGDLVAVTEWMDDNTINFMAKEGRGLICAPI DKSIAERLKLQSMEQNNTDIYGTHFTVSVDYYKTTTGISAHERTKTARALIDEKTNPEDF HRPGHLFPLIAKENGVLTRNGHTEAAVDLARLTGAQPAGVICEIMNDDGTMAKGEDLQSF KERHHLKMITIKSLVAFRKAVELNVNLKAKVKMPTDFGHFDMYGFTTDYSEEEIVAIVKG DLKSNPNVRMHSACLTGDIFHSQRCDCGAQLEASMKYIEEHGGMIIYLPQEGRGIGLMNK LRAYELIEKGYDTVTANLALGFDEDLRDYHVAAEILKYFGLSKINLLSNNPKKFEGLKDY GIEIVDRIELIVPETQHNHSYMETKKNKMGHLI >gi|224999876|gb|ACJC01000124.1| GENE 11 10894 - 11526 644 210 aa, chain - ## HITS:1 COG:SA1588 KEGG:ns NR:ns ## COG: SA1588 COG0307 # Protein_GI_number: 15927344 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Staphylococcus aureus N315 # 1 210 1 210 210 302 76.0 4e-82 MFTGIIEEIGTVQQVRSEQSVRTLEIKAQNILVDMHIGDSISVNGACLTVIDFTDSSFSV QVIKGTENKTYLGNLQRNTEVNLERAMSGSGRFGGHFVLGHVDELGTISKINETANSKII SIKTTKNILNQMVKQGSITVDGVSLTVFDLHDHTFDIHLIPETRRSTILSSKKVGDKVHL ESDVLFKYVENIMNQNQSQITEEKLRAFGF >gi|224999876|gb|ACJC01000124.1| GENE 12 11533 - 12564 784 343 aa, chain - ## HITS:1 COG:SA1589_2 KEGG:ns NR:ns ## COG: SA1589_2 COG1985 # Protein_GI_number: 15927345 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Staphylococcus aureus N315 # 138 343 1 206 206 285 65.0 1e-76 MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLKAQGA TIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAVKDTTLVSKGDEILREAGIEVEFQYNE NAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEHDA VITGRRTIEADNPLYTTRVPDGKHPIRVILSKTGQLDFNQQIFKDTASEIWIYTENEKLK TDKSFIKIINISKCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNELILYIAPKL IGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK >gi|224999876|gb|ACJC01000124.1| GENE 13 13014 - 14498 1319 494 aa, chain - ## HITS:1 COG:SA1590 KEGG:ns NR:ns ## COG: SA1590 COG4529 # Protein_GI_number: 15927346 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 494 1 493 500 703 69.0 0 MRVAIIGMGTAGVSVLRQLVKHENFSQLKVDVYDDDRNMGQGVPFQNDSSELLINMPSKS MSLNLDDDQEFWKWYQNQTEFNFSNPQYLPRFVFGHYMKSYLSYYNDQFDNLTIINDKVQ EIFTQSDVDDTDLKYHVCTCDDEKEWREYDYLFLTFGTFSYHDPYDLKGTKGYIQTPYPT YHTLDNVKDSDRIVIIGTGLASLDAVRYVAAHHPSLPITMTSRSAALPSVRGKMTKIQFT HLTKSRFNGIMKKHFGNVPLEKVVSLFLKECEDYGIDFKKLIYRRTGNHVKDLEYDLKHE EEMGIFQSIIEHLKENLNWIWNSLSVKDQETFNRKYTKIIQLNSNPMPPRTARLLIKLIQ NNELVIKKGLEDIVHKNEQFMLKYNDTTQNYESFDIVINATGSKTHLSQLDEDDQLILNL ENRQIVQRHPMGGIQIIPETNQVISPRYGTLKNVIAIGQMTNGVNKLRNGVKMIVNQVVD TVSQLYITQENRNK >gi|224999876|gb|ACJC01000124.1| GENE 14 14847 - 15698 866 283 aa, chain - ## HITS:1 COG:SA1593 KEGG:ns NR:ns ## COG: SA1593 COG4193 # Protein_GI_number: 15927349 # Func_class: G Carbohydrate transport and metabolism # Function: Beta- N-acetylglucosaminidase # Organism: Staphylococcus aureus N315 # 1 281 1 281 284 449 84.0 1e-126 MTKHKKGSILAIIGLLIVFVVTGFIFFSMISDQIFFKHVKPVEKVEKLDKTLDKASKKQI HNYTSQQVSNKANTAWRDASGTEIKEAMDSSKFIDDDKQKYQFLDLSKYQGIDKNRIKRM LFDRPVLLKHTDDFINAAKSKHVNEVYLISHALLETGAAKSELANGVEIDGKKYYNFYGV GALDSDPIKTGAEYAKKHGWDTPQKAIYGGADFIHKHFLSHDDQNTLYSMRWNPKNPGEH QYATDIKWAESNANIIADFYKNMKTEGKYFKLYVYKDDDKHQK >gi|224999876|gb|ACJC01000124.1| GENE 15 16077 - 16292 263 71 aa, chain - ## HITS:1 COG:no KEGG:SERP1331 NR:ns ## KEGG: SERP1331 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 70 1 70 71 111 100.0 7e-24 MDYAHLNLEHFFARNDDLDIIRDRSDFVMINNFTNEMKYREGEIEGTIDLNQYYYKNRSQ AVSFIMMNYKK >gi|224999876|gb|ACJC01000124.1| GENE 16 16499 - 16978 415 159 aa, chain + ## HITS:1 COG:SA1595 KEGG:ns NR:ns ## COG: SA1595 COG1595 # Protein_GI_number: 15927351 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Staphylococcus aureus N315 # 1 148 1 150 156 115 47.0 3e-26 MSFEESYKKYNNIIHYLLKSYQITYNYDEFYQQMLIKMWQLTLDFDEQQSSSFKSYLFIR LKFYLIDLFRQKDTTLNICSIDTLSELSPSISINEIDLFIKDISQQLLPRERDWLALYLQ GYKQYEISQILDFSPTTIKKIKSNTIRKLRRYLILSTKD >gi|224999876|gb|ACJC01000124.1| GENE 17 16984 - 17427 242 147 aa, chain + ## HITS:1 COG:no KEGG:SERP1334 NR:ns ## KEGG: SERP1334 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 147 1 147 147 233 92.0 2e-60 MKCISTHSLLYLQTAFSTNVETYIQYEHYNIHLPCSSEKTLHYLLELHQKSYHHQCMLSK NILNIKKLIPIYINEETILFPVTQKRASIKYFINARNIIGIHSSIHTTKIVFENGSTIEV NIPYTLVTKKWQESLTVGHIIEKTTFY >gi|224999876|gb|ACJC01000124.1| GENE 18 17414 - 17857 389 147 aa, chain - ## HITS:1 COG:no KEGG:SERP1335 NR:ns ## KEGG: SERP1335 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 147 1 147 147 212 93.0 3e-54 MSKNEFIKRVNKQLWFLNAKEKNALNKYIDSVDQDKSVDTNKPIRFSNEYLKKFIFNHKK KSTSHVFVLLICMVLAYAFLLGLFILGLVTSLAIVHAYINPRIDLSGFVMLTVLIIAIVM MIASLYAIKHTTALFTKKLLEYKFNKK >gi|224999876|gb|ACJC01000124.1| GENE 19 17997 - 18710 880 237 aa, chain - ## HITS:1 COG:SA1599 KEGG:ns NR:ns ## COG: SA1599 COG0176 # Protein_GI_number: 15927355 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Staphylococcus aureus N315 # 1 237 1 237 237 383 88.0 1e-106 MTKLNVKVFADGADIEEMKSAYKNQLVDGFTTNPSLMAKAGVTDYKAFAEEAVSEIPDAS ISFEVFADDLPTMEKEAEILKQYGDNVFVKIPIVTTTGESTLPLIKSLSSKQVRLNVTAV YTIEQVKAITDVVTEGVPTYVSVFAGRIADTGIDPLPLMKEAVKVTHSKEGVQLLWASCR EVYNVIQADEIGADIITCPADVVKKVNNNLGRDIGELSVDTVKGFAKDIQSSGLSIL >gi|224999876|gb|ACJC01000124.1| GENE 20 18987 - 19295 153 102 aa, chain + ## HITS:1 COG:no KEGG:SERP1337 NR:ns ## KEGG: SERP1337 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 102 1 102 102 108 100.0 7e-23 MARSKKYFYLSLLMIILSFFFNTNNSLLSNIFQSFMKIVVVTSIVNIIILILSIVFADKS IKYAKESSDWIRFASKILPLIILITIIIHILSSLHTFGYIFK >gi|224999876|gb|ACJC01000124.1| GENE 21 19332 - 19697 362 121 aa, chain + ## HITS:1 COG:SA1601 KEGG:ns NR:ns ## COG: SA1601 COG0239 # Protein_GI_number: 15927357 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Staphylococcus aureus N315 # 1 121 27 147 147 124 57.0 5e-29 MQYLYIFVGGALGALIRFCLSMLNEGSTFPLGTFVANLLGAFLMGSIGALSVSLFKTHPN IKKGLTTGLLGALTTFSTFQFELITLLNQHHFILFTVYGVTSYILGILSCYLGVKIGGRF S >gi|224999876|gb|ACJC01000124.1| GENE 22 19694 - 20047 295 117 aa, chain + ## HITS:1 COG:SA1602 KEGG:ns NR:ns ## COG: SA1602 COG0239 # Protein_GI_number: 15927358 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Staphylococcus aureus N315 # 1 117 1 117 117 101 55.0 4e-22 MITILLVMLGGGIGAVFRALITNICQSLFNSKIPIGTSIVNITGSLIIGFMMGHALASQD MFPFFVTGVLGGLTTFSTLSSELVNMLSPQFKPLRFVVYSLLQFILGFIACFCGYHI >gi|224999876|gb|ACJC01000124.1| GENE 23 20296 - 21132 852 278 aa, chain - ## HITS:1 COG:SA1606 KEGG:ns NR:ns ## COG: SA1606 COG0656 # Protein_GI_number: 15927362 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Staphylococcus aureus N315 # 1 277 1 277 277 426 71.0 1e-119 METVQFYNGRTMPKIGLGTYRVKDSDECRESVKHAIEQGYRSIDTAMIYGNEETVGQGIK EGLKSTGLSREDLFITSKLWLTDFGRQNVEEAYRQSVEKLGLDYLDLYLMHWPGTNEAVM IDSWRGMEDLYKQNQVKNIGVSNFTPEHFEALLAQVSIKPVINQVEFHPYLTQNKLRKYL EAQNIIMESWSPLMNSQILHDDVINEVANEVGKTPAQVVIRWNIQHDVVVIPKSVTPHRI EENLDVWNFELSDNQMERIDQLNQDKRIGPNPLEFDGK >gi|224999876|gb|ACJC01000124.1| GENE 24 21313 - 22221 941 302 aa, chain - ## HITS:1 COG:no KEGG:SE1457 NR:ns ## KEGG: SE1457 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 302 1 302 302 538 99.0 1e-152 MDFSSPTVIGLIVAILVAVLFFVLFLVANHSKKKVKNQTEAHYKEKEQHLKESHEEALEK ERVENKKVVTKQQEDFDVTVSNKNREIDALKLFSKNHSEYVTDMRLIGIRERLVNEKRIR PEDMHIMANIFLPSNELTNVERVSHLVLTRTGLYIIDSQLLKGHVYNGISGAQFKELPTM SQVFDTLDLDSSQPQTLVLDQNEDQHSLSFVNYSDKIKHIEKLAGDLQNELNTKYTPTSI LYFNPKKDNDVTISHYTQSSNVKVLVGPEQLEEFFNKFVFHGRIQYNVDDLQDIMDKIES FN >gi|224999876|gb|ACJC01000124.1| GENE 25 22324 - 23523 1564 399 aa, chain - ## HITS:1 COG:SA1608 KEGG:ns NR:ns ## COG: SA1608 COG0192 # Protein_GI_number: 15927364 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Staphylococcus aureus N315 # 1 397 1 397 398 682 88.0 0 MTYNKRLFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEIS TTTYVDIPKVVRETIKDIGYTRAKYGYDSQTMAVLTAIDEQSPDIAQGVDKALEYRNEIS EEEIEATGAGDQGLMFGYATDETDTYMPLPIFLSHQLAKRLSDVRKDEILDYLRPDGKVQ VTVEYDEDDQPRRIDTIVVSTQHAEDVELAQIEKDIKTHVIYPTVDKALLDEETKFYINP TGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIV AAGLAKQCEVQLAYAIGVAEPVSISINTFDTGKVSEARLVDAVRKHFDLRPAGIIKMLDL KQPIYKQTAAYGHFGRTDVLLPWEKLDKVNLLKDAVEIQ >gi|224999876|gb|ACJC01000124.1| GENE 26 23893 - 25485 1460 530 aa, chain + ## HITS:1 COG:SA1609 KEGG:ns NR:ns ## COG: SA1609 COG1866 # Protein_GI_number: 15927365 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Staphylococcus aureus N315 # 1 530 1 530 530 920 83.0 0 MSIDTYTETLKINQLIEKATSHFQLSSTQLYKKILKNHEGELTELGAINVKTGKYTGRSP KDKFIVTEPSYKDNINWGDINQPMDEETFLKLYNKVLDYLNQKDELYIFSGYAGSDKESR LKLKVINELAWHNLFARNMFIRPESIDEAQNIKPNFTIVSAPNFKANPELDGTNSETFVI ISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGT GKTTLSADPKRKLIGDDEHGWNKNGVFNIEGGCYAKAIHLSKQKEPQIYNAIKYGTILEN TVTNDDGTVDFDDNTYTENTRAAYPIDYIENIVTPSKAAHPNTIIFLTADAFGVIPPISK LTKDQAMYHFLSGFTSKLAGTERGVTEPQPSFSTCFGAPFLPLNPTKYADLLGNLIDIHD VDVYLVNTGWTGGKYGIGRRISLHYTREMVDQAISGKLKNTKYIKDDTFGLNIPVQIDNV PTTILNPINAWNNKDNYKAQAYDLIQRFNNNFKKFGKEVEHIANKGAFNQ >gi|224999876|gb|ACJC01000124.1| GENE 27 25547 - 26308 590 253 aa, chain - ## HITS:1 COG:SA1611 KEGG:ns NR:ns ## COG: SA1611 COG1506 # Protein_GI_number: 15927367 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Staphylococcus aureus N315 # 1 247 9 253 256 350 70.0 1e-96 MPIEYETHFFNEVTYIVDYLKVKALMMIPKSKKDIKRIVIYLRGGKGQVGRVRAARLMQF ANEHTLVIGPYYRGNNGSEGRDEFYRGDLNDVTHLIRLLNQNYPSAFIHMVGFSRGGLQG LLTFNDLSVDSYMIWGGVSDIHLMYEERVDLRGMLRRMVGHPKKDTKAYKSRDAMQFIKK DSPPILIIHGGKDIQVGIHQAYDLEKKLKSKGTYYQTYYQLDEGHVPRPAAMKDVIQYIH QWMNDVENKNLSA >gi|224999876|gb|ACJC01000124.1| GENE 28 26319 - 26786 253 155 aa, chain - ## HITS:1 COG:SA1612 KEGG:ns NR:ns ## COG: SA1612 COG0494 # Protein_GI_number: 15927368 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 1 155 3 157 159 178 58.0 4e-45 MEFEDKDGRVVTLNYKNENDMPNGNHVLAIPVYNSQLLFTHHQQRGIEFPGGKVEISEQS KEAVIRELYEETGAIAKFIYYFAQYRIKTEHDEPFIKDVYFVEVSHLEYVDTYYETLGPC LYHHINDIPLNKRSFLINDKAILHCLERVRALGFY >gi|224999876|gb|ACJC01000124.1| GENE 29 26854 - 27105 255 83 aa, chain + ## HITS:1 COG:SA1613 KEGG:ns NR:ns ## COG: SA1613 COG0759 # Protein_GI_number: 15927369 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 83 1 83 85 129 80.0 1e-30 MLKKILLSLVVFYQRFISPLTPPTCRFYPTCSQYTREAIEYHGALKGLYLGVRRILKCHP LHKGGFDPVPLKKNKNSKTTHHH >gi|224999876|gb|ACJC01000124.1| GENE 30 27102 - 28103 882 333 aa, chain - ## HITS:1 COG:SA1614 KEGG:ns NR:ns ## COG: SA1614 COG4948 # Protein_GI_number: 15927370 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Staphylococcus aureus N315 # 1 325 1 325 333 333 48.0 4e-91 MKVKAINLYTYKEPFKSPISTPKVKLTHRESLFTEIVTYSGEIYYGECNAFLTHWYDKET ILTVANRLRKWIPQVLHQDMISFDSWLPYLNQMNDAPAARSMVVMAVYQMYNDLHDFEVQ YGATVSGLTNSQIETLLETRPKRIKLKWSTSLIKDLETIRLLNLECDIAIDANESLTKPS FLQLANEKTSDIIYIEEPFKILEDLNDIDMSIFPRIAIDEKALSIEKIQSIIQQYPIQVV VLKPFRLGGIDRILDAMKILKEKNIRFVVGGMYEFGLSRYFTAMLAKEGNYPGDITPHGY YFANDIVETSGVLKEGMIYFTPPKVKRSLLNKV >gi|224999876|gb|ACJC01000124.1| GENE 31 28093 - 29517 1053 474 aa, chain - ## HITS:1 COG:SA1615 KEGG:ns NR:ns ## COG: SA1615 COG0318 # Protein_GI_number: 15927371 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Staphylococcus aureus N315 # 1 461 1 489 492 630 64.0 1e-180 MNFWLQEQAQSNGNRLAIVTNQLSLTYEELYHRAKTIAQYLTSLNQKRIGLYISNDIDSV VLIHACWLAHIEIAMINTRLTRHEMINQMNSVDITTIVHTLPLELEGFNLYHFNDLTQLD KYDVSSYKFNLESIASIMFTSGTTGPQKAVPQTFNNHLASAIGCKHSLGFEQDTVWLSVL PIYHISGLSVILRAVIEGFTVRLVKKFQTDDMLTQIKTYPITHMSLVPQTLKWLMDAGLT QPFSLEKILLGGAKLSPQLIEQALTYRLPVYNSFGMTETCSQFLTASPQMLNERFDTVGK PSENVEVKIKNPNAYGHGELLIKGENVMNGYLYPKDLKDTFDNDGYFQTGDIAEIDDEGY VMIYDRRKDLIISGGENIYPYQIETIAKDFEGIEDAVCVGISDDTWGQVPILYYVTNQDI NRNELIEHFENHVARYKIPKKYYQVESLPYTSTGKLQRKKVKSEDLNEGKNNES >gi|224999876|gb|ACJC01000124.1| GENE 32 29616 - 29846 130 76 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFKSQSPIVNVDYMRHLSVFNIVIAFKLVTYVTFIITFQFIKYSIILINDSIIDYIYIFY KNRSLFKNKLSHELII >gi|224999876|gb|ACJC01000124.1| GENE 33 30765 - 31430 581 221 aa, chain + ## HITS:1 COG:no KEGG:SE1466 NR:ns ## KEGG: SE1466 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 221 1 221 221 370 98.0 1e-101 MQQETTSWYKQEWFIVLSLLFIFPLGLFLMWKFSKWPSIARTIITVAISVIVLASITYYG NLQMIVPATSISNNETKETTENTVNDKDELNHKAAVEETKTNYDSTKENTKEPAKENESA TRLENSALEKAKSYSDDFHMSKLGIYDILTSEYGEKFDKEDAQYAIDHLEADYEKNALEK AKSYAKDMHMSNDSIYDLLVSNYGEKFTESEAKYAIEHLDN >gi|224999876|gb|ACJC01000124.1| GENE 34 32557 - 32790 86 77 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAPQVGFEPTTDRLTADSSTTELLWINKMERVMGIEPTTSAWKAEVLPLNYTRLMKYDYG AVEGNRTLECRNHNPMR >gi|224999876|gb|ACJC01000124.1| GENE 35 33383 - 33937 722 184 aa, chain - ## HITS:1 COG:SA1649 KEGG:ns NR:ns ## COG: SA1649 COG3545 # Protein_GI_number: 15927405 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 184 1 184 184 258 69.0 4e-69 MTDIIIVHSKHGNSKNHWYEWLRHNLTLEGYDVSLFNLEANGHAQIDEWVNEMKQQLHIR KKDTYFVTHGFGSIAALKFLEETHHHIEGFFSIAGFKEDAQDIDEDVDLKGVTIDYDKIK EQVDKFYGLTSKDDQYVSYKETQRLMNTLNGHTRVVEDGGHFLEEEGFVTFTSLINRMQG YMTR >gi|224999876|gb|ACJC01000124.1| GENE 36 34073 - 35458 1588 461 aa, chain - ## HITS:1 COG:SA1650 KEGG:ns NR:ns ## COG: SA1650 COG1232 # Protein_GI_number: 15927406 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Staphylococcus aureus N315 # 1 461 5 466 466 781 82.0 0 MAIIGAGITGLSSAYFIKKQDPSIEVTIFEASNRVGGKIQTYRSDGYTIELGPESYLGRK TIMTDVAKDIGLENDLITNTTGQSYIFAKNKLYPIPGGSIMGIPTDIKPFIKTRLISPIG KLRAGLDLFKKPIEIENDISVGSFFRQRLGNEVLENLIEPLMGGIYGTDIDQLSLMSTFP NFKEKEEQFGSLIKGMKDEKEQRIKKRQLYPGAPKGQFKQFRHGLSSFIEALVKDIESKG VHIRYNTPVKDILISQKDYEILLEDDTKEKFNGLLVTTPHQVFLNWFSHDPAFDYFKNMD STTVATVVLAFDEKNITNTYDGTGFVIARTSQTDITACTWTSKKWPFTTPEGKVLIRAYI GKPGDTVVDDHTDEEIVSIVRKDLSQMMTISGDPDFTIVNRLPKSMPQYHVGHIKMIKEI QQHIKTTYPRLRVTGAPFEAVGLPDCIQQGKNAVEEILEEL >gi|224999876|gb|ACJC01000124.1| GENE 37 35609 - 36532 956 307 aa, chain - ## HITS:1 COG:SA1651 KEGG:ns NR:ns ## COG: SA1651 COG0276 # Protein_GI_number: 15927407 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Staphylococcus aureus N315 # 1 305 1 305 307 520 83.0 1e-147 MTKTIGLLVMAYGTPYKESDIEPYYTDIRRGKKPTEEELQDLKDRYEFIGGLSPLAGTTD RQAEALLDALNKERDDVNFKLYLGLKHISPYIEEAVEQMHNDGIKEAVTVVLAPHYSSFS VGSYDQRAQEKADEYGIQLTHIKHYYQQPKFIKYWTEKINETLEQIPSQEHDETVLVVSA HSLPKGLIERNNDPYPHELHETAEILKQESNIIHVAEGWQSEGNTGTPWLGPDVQDLTRD LYKEHQYKHFIYTPVGFVCEHLEVLYDNDYECKVVCDDIGVNYYRPEMPNTHPLFIGAIV DEIQSHI >gi|224999876|gb|ACJC01000124.1| GENE 38 36609 - 37688 1069 359 aa, chain - ## HITS:1 COG:SA1652 KEGG:ns NR:ns ## COG: SA1652 COG0407 # Protein_GI_number: 15927408 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Staphylococcus aureus N315 # 16 359 2 345 345 618 85.0 1e-177 MLSLVRMIQLWGDSRVRSKNDTILKAIKGESTSHTPVWFMRQAGRSQPEYRKLKEKYSLF EITHQPELCAYVTHLPVDNYQTDAAVLYKDIMTPLKPIGVDVEIKSGIGPVISNPIQTVK DVEKLSQIDPKRDVPYVLDTIKLLTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYNFTK AMMYRDEETWFAIMNHLVDISIDYVVAQVEAGAEIIQIFDSWVGALNVKDYRYYIKPAMN KLISGIKAYYDVPIILFGVGASHLINEWNDLPIDVLGLDWRTSIKQADKMGVNKAIQGNL DPSLLLAPWDVIESRLKDILNQGLDRGKHIFNLGHGVFPEVKPETLRKVTEFVHNYTAK >gi|224999876|gb|ACJC01000124.1| GENE 39 37962 - 38465 563 167 aa, chain + ## HITS:1 COG:BS_yhgC KEGG:ns NR:ns ## COG: BS_yhgC COG2329 # Protein_GI_number: 16078074 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Bacillus subtilis # 1 140 1 140 166 71 26.0 8e-13 MYLYTSYGTYHFLNQIKLNHQERSLFQFSTNDSSVILEESEGKSILKHPSAYQVIDSIGE FSEHHFYSAIFVPTSEDHRQQLEKKLLHVDVPLSNFGGFKSYRLLKPTEGSTYKIYFGFA NRTAYEDFKASNIFKENFSKDALSQYFGASGQHSSYFERYLYPIEDH >gi|224999876|gb|ACJC01000124.1| GENE 40 38901 - 39518 616 205 aa, chain - ## HITS:1 COG:SAP005 KEGG:ns NR:ns ## COG: SAP005 COG4300 # Protein_GI_number: 16119205 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Staphylococcus aureus N315 # 1 205 1 205 205 264 74.0 9e-71 MFETITTAAILYIATAVDLLVILLIFFARANNYQQYKDIYIGQYLGSLTLIIVSLFLAYV LNYVPDKWILGLLGLIPIYLGIKVAIFDDCEGERRAKDELNKKGLSELSKSVAVVTLASC GADNIGLFVPYFTTINNYELVITLITFLILIFILVFTAQKLANIPGLGEIIERFSRWIMS IVYIGLGLFIIIENGTVQKLFHFVF >gi|224999876|gb|ACJC01000124.1| GENE 41 39577 - 40800 768 407 aa, chain - ## HITS:1 COG:SA1654 KEGG:ns NR:ns ## COG: SA1654 COG4473 # Protein_GI_number: 15927410 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Staphylococcus aureus N315 # 1 407 1 407 407 442 62.0 1e-124 MNNEALTLFRKRQHAIRKEKNYYNKFIFNGHFTVFLLILLGAFIFGYGEWLSHIPPRIDY ALFASIAIAVVSLFPIRTLLKEADQIFLLPFERHMKNYIKASLFYSYISRISLPFILLIV FFPLFYKLSHSDYGFYIAFSISTLLYPYLVLLIKWQWVKLNKNVFIINLLLFIPLAVTHY MILKFHNYLAFLIMILLFVIYLVLKSRADHYLLPWEKVIAIEQQHHTNYYKFVNMFTDVK HLRESAVRRSYLDFLLPVPKGTKFNENRMYLYLFIRSFVRGRDAFSIILRLVIIALILMV WLSQPVVSLIIGSLFMYIILLQMSQFYTQQAYGLWPQVWPVSDTKVITGYQQFLNRLMII IAITFTIVYVIKHHELFFFAVLFFIVGWLTIRNTIKKLKYQETLLRD >gi|224999876|gb|ACJC01000124.1| GENE 42 40793 - 41533 262 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 220 2 226 245 105 26 6e-22 MTVKIEHLTGGYGKKPVIKDLNFELEKGEIVGLIGLNGAGKSTTIKHMLGLINPMEGKLS ISNIRINEDIENYRRKLSYIPESPVIYDELTLEEHIEMTAMAYQLSREEAMRRAKPLLKV FRLENELKVFPSHFSKGMKQKVMIICAFIVDPELYIIDEPFLGLDPLGIQSMLDLMVEKR NENRTVLMSTHILATAERYCDRFIILDKGEIVAFGNLEELREQTGLKDKTLDDIYIHVTQ GSSAYE >gi|224999876|gb|ACJC01000124.1| GENE 43 41663 - 42088 527 141 aa, chain + ## HITS:1 COG:SA1656 KEGG:ns NR:ns ## COG: SA1656 COG0537 # Protein_GI_number: 15927412 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Staphylococcus aureus N315 # 1 129 1 129 140 231 86.0 3e-61 MSETIFSKIISGEIPSFKIYENDYVYAFLDISQVSKGHTLLVPKKPSANIFETDEETMKH IGVALPKVANAIKKAFHPDGLNIIQNNGEYADQSVFHIHFHLIPRYENDIDGFGYKWETH EDVIDDETKQKIATQIQAQMS >gi|224999876|gb|ACJC01000124.1| GENE 44 42165 - 42536 592 123 aa, chain + ## HITS:1 COG:SA1657 KEGG:ns NR:ns ## COG: SA1657 COG4980 # Protein_GI_number: 15927413 # Func_class: R General function prediction only # Function: Gas vesicle protein # Organism: Staphylococcus aureus N315 # 1 121 1 121 121 167 77.0 6e-42 MKVSRILFGLGVGAVAGFAVALRHRDDQSVKNHTIDASQPTGAQSELQREIENMKQSFND ILNYGSQIKNESIEFGSSIGEEFKGLIGNFKSDINPNIEKLQSHIENLQNRGEDISNNLS KDK >gi|224999876|gb|ACJC01000124.1| GENE 45 42702 - 43262 435 186 aa, chain + ## HITS:1 COG:no KEGG:SERP1375 NR:ns ## KEGG: SERP1375 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 186 1 186 186 287 98.0 1e-76 MFLCTRQIDIHARFGIQRIAFLSLVATIFTFLVSYEVMYYFLDTPLSDRHFFVLVVFILL MYPIHKIVHLLFFLPYYKSFKIHKLSSKKWVPYFNTYVNTPVHKIYFCINLILPIFFLSS IFIMLSIYLPQYGHYFMFLLSLNIGCSMMDILYLKILLFSNDGHYVEEHQSGLHILNKVD NPYTQH >gi|224999876|gb|ACJC01000124.1| GENE 46 43464 - 44441 1260 325 aa, chain + ## HITS:1 COG:SA1659 KEGG:ns NR:ns ## COG: SA1659 COG0760 # Protein_GI_number: 15927415 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Staphylococcus aureus N315 # 1 307 1 307 320 306 72.0 4e-83 MKLMNKIIVPVTASALLLGACGSNATESKDNTLISSKAGDVKVADVMKKMGKEQIANTSF SIVLNKILADKYKDKVDTKDIDKDIKKEEKQYGGKDQFESMLKQQGMSLDDYKEQKKLSA YQKQLLLDKVNVSDKEIKENSKKASHILIKVKSKSSDKEGLSDKKAKEKAEKIQKEVEKN PNKFGEIAKKESMDSSSAKKDGSLGYVIKGQMVDSFEKALFKLKEGEVSKVVKTDYGYHI IKADKETDFNSEKSNIKQKLIEEKVQKKPKLLTDAYKELLKEYKVDYKDRDIKKAIEDSI LDPDKLKQQQQQQSQGASGLTNSGS >gi|224999876|gb|ACJC01000124.1| GENE 47 44865 - 45806 999 313 aa, chain - ## HITS:1 COG:SA1660 KEGG:ns NR:ns ## COG: SA1660 COG3481 # Protein_GI_number: 15927416 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Staphylococcus aureus N315 # 1 313 1 313 313 544 82.0 1e-155 MRNVEKLNPGDSVDHFFLIHRATQGVTAQGKDYMTLFLQDKSGDIEAKLWTATKDDMQTL KPETIVHVKGDIINYRGRKQMKIHQIRLAQAEDKVSTKDFVDGAPMSPSEIQEELSHFML DIENANLQRITRHLIKKYQDRFFTYPAASSHHHNFASGLSYHVLTMLRIAKSICDIYPLL NRSLLYSAIILHDLGKVRELSGPVATTYTVEGNLLGHISIASDEVAETAKELGIDGEEVM LLRHMILAHHGKMEFGSPKLPHLKEAEILYFIDNIDAKMNMFDKAFKKTEKGQFTERIFG LENRQFYNPTTLD >gi|224999876|gb|ACJC01000124.1| GENE 48 45803 - 48742 3062 979 aa, chain - ## HITS:1 COG:SA1661 KEGG:ns NR:ns ## COG: SA1661 COG4717 # Protein_GI_number: 15927417 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 979 1 978 978 1170 69.0 0 MIIKSLEIYGYGQFVQRKIEFNRQFTEIFGENEAGKSTIQAFIHSILFGFPTKKSKEPRL EPRLGNQYGGKLSLIFDDGIEAEVERIKGSAHGDVKIYLKDGTIRDEVWLNKKLNYISKK TYQGIFSFDVLGLQDIHKNLDEEQLQDYLLEAGALGSTEFTSMRDRIGQKKEELYKKSGK NPIINQQIEQLKQLENQIRNEESKLDTYHRLVDDKDKSSRRLENLKQNLNQLSKMHERKQ KEVALHDQTQEWKRLEQSLNIEPINFPEKGIDRYETAKSHKQSLERDKSLREERLSLLNK EAESIKPVDQKYIDAFNSLYQQETEIKQKEFELRSIEKDIADKQRELEALQSNIGWQEVF YDTDSTEAMKSHMSDLVLGKQEQIAYINQLERGLEENKIERNSNSNEINQVENELVPDET FEKKKEYTQQVLELHEKENLYKKLKETFEEEQTQKNKRQKFLRIGFIVLTILAAALSIFS FFTANLIFGIIFALLTVIFVVGIIFSKSKAVDYSTAISQEINDLENQLTQLEKEYNLDFD LEHQQRVREQWRHAKKNKKILEEKHQYINQSLTTANERLDSLKNSIIEIKKELHLSEKLS DELVVESVSTISQIKAHDKYIIDLNQQRKNLLKDINHFYERAQSVTEPHLKQFNQMSFFH DVKQWLKNAEEQNEAWNKNQNEMQLLNNELKQLKSRLSETNQMIKELFDYVDVDNEEDYY THHHHFETYQNDLNRFNDLNQYLENQNYTYEMSSQLSEKTTAQLEEEDHRLAKQVDDYND QFLEMQAEVSDLNAQINHMETDRTLAQLRHEYYSLKNRLNDIAKDWASLSYMQALVEEHI KQIKDKRLPQVINEAVSIFKNLTNGTYNMIHYTENHKIHVKHSNGQVFEPVELSQSTKEL LYVALRISLIKVLKPYYPFPVIVDDAFVHFDKYRKERMLKYLRELSEHYQILYFTCTKDH VIPAKEVLTLNKLQEGGKK >gi|224999876|gb|ACJC01000124.1| GENE 49 48732 - 49928 1098 398 aa, chain - ## HITS:1 COG:SA1662 KEGG:ns NR:ns ## COG: SA1662 COG0420 # Protein_GI_number: 15927418 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Staphylococcus aureus N315 # 1 398 1 398 398 631 79.0 0 MVKFIHCADLHLDSPFKSKSYLSPNIFEDVQKSAYESFKNIVDLALKQEVDFIIIAGDLF DSENRTLRAEVFLNEQFERLRKEQIFVYICHGNHDPLTSKITSQWPNNVSVFSNQVETYQ AITKSGETIYIHGFSYQNDASYENKIDAYPSSQGQKGIHIGVLHGTYSKSSVKDRYTEFR LEDLNQRLYHYWALGHIHQREQLSDMPVINYPGNIQGRHFNELGEKGCLLVEGDHLKLTS QFYPTQFIKFEEATIETDHTSKQGLYDVIQSFKDKVRPEGKSFYRLNVRINSEDIIAPQD LIQLKEMITEFEENENQFVFIEDLNLQYVQNDEMPIVKEFSPELLDDASLFDSAMTDLYL NPRASKFLDDYNEFDKVELVNHAESLLKDEMRGEQNDN >gi|224999876|gb|ACJC01000124.1| GENE 50 50200 - 50544 622 114 aa, chain - ## HITS:1 COG:SA1663 KEGG:ns NR:ns ## COG: SA1663 COG3679 # Protein_GI_number: 15927419 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 114 1 114 114 113 92.0 9e-26 MAVNLYDYANQLEQALRDSDEYKAIKDAFAKVKENEESKKLFDEFRETQMSFQQKQMQGE EIPEEDLQKAQEQAQAIEKDENISELMNAEQKMSQVFQEINQIIVKPLDEIYAD >gi|224999876|gb|ACJC01000124.1| GENE 51 50617 - 51747 993 376 aa, chain - ## HITS:1 COG:SA1664 KEGG:ns NR:ns ## COG: SA1664 COG4399 # Protein_GI_number: 15927420 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 376 1 374 374 402 56.0 1e-112 MHSILLVVFMIILGAIIGGVTNMIAIKMLFHPFKPYYIFRFRIPFTPGLIPKRREEIARK IGQVIEEHLITEELIRQKLNQQQSRNMIQQLIQKQISKLKNDDVTIKNIAKFLGIDVNEL VDYKLTTKVLSKLNFWYEKNKYRKLSEILPQSFLDQCKGQIEYITDFLCERARNYLSSEK GERDIYEMLDTFFNEKGRIIGLLQMFMTKESIADRIQQELIRLTQHPQSQIIITKVLNDE YETFKDKNLDEIIKAQQFKNYSQLVLNELKTYLNLKDKTQRPINQIVPQFIQFLEYDTSK RMTDLIIKGTSKHLTNIMKKINLRQLIEEQINTFDLKYIENLIIEIANKELKLIMTLGFI LGGIIGFFQGVIAIFV >gi|224999876|gb|ACJC01000124.1| GENE 52 51930 - 52394 314 154 aa, chain - ## HITS:1 COG:SA1665 KEGG:ns NR:ns ## COG: SA1665 COG1476 # Protein_GI_number: 15927421 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 154 1 154 154 288 92.0 2e-78 MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCVSICAL FRDSDVLNSTFGCDPLEIVQTISRNHCAYPNHSTTSDIYWNTIDTRNGFILQSNKVSNIY RVLNNEKQPIFGTSKMREAETYFNRNAKEELIHV >gi|224999876|gb|ACJC01000124.1| GENE 53 52666 - 53289 676 207 aa, chain - ## HITS:1 COG:SA1666 KEGG:ns NR:ns ## COG: SA1666 COG2197 # Protein_GI_number: 15927422 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 207 1 207 207 301 80.0 4e-82 MHKVILVDDHYIVRQGLEFLLSTVDDLSVLKGFKDGATFLSYLKNNERPDIVLLDLVMPE MNGIEITEILKQQYPEIKVLVLTSYVDDEHVISAIDKGADGYEMKDVEPQKLIETIHKVL QGERIIHPQAKSVIKAVSKKPHYTNKLSKREKEVLKEMVKGKTNKEIARALFVSEKTVKT HVSHIFSKLEVSDRTQAAIYAMENKLI >gi|224999876|gb|ACJC01000124.1| GENE 54 53282 - 54415 770 377 aa, chain - ## HITS:1 COG:SA1667_1 KEGG:ns NR:ns ## COG: SA1667_1 COG2203 # Protein_GI_number: 15927423 # Func_class: T Signal transduction mechanisms # Function: FOG: GAF domain # Organism: Staphylococcus aureus N315 # 1 171 1 171 171 241 67.0 1e-63 MEKPTRLALLKEIAEFLNEETEIYSMMLGALRLLINGSDFSTGWIFYIDEEGHHDLVSSV DLPEALSKNSCYYLTNGSCWCVQAYQNHKLTKASNIINCSRINLANHAYDKETNHITHHA TVPLQSGSERFGLLNVASPNKEHYSEEDLELLESVAFQIGSAIKRIQLTNKEKENAKINE RNRLARDLHDSVNQMLFSLKLTAHAAKGITTDEQAQKAFKTIEETSQNAVNEMRALIWQL KPVGLEQGLIHALHYYSKMLGLDLKVTINGLIDLSNDIEENVYRIIQEAMNNVIKHAKTN KVYLDLSQNVEYLEIDIRDNGQGFDTQSINTFLFSGLKNIKQRTQYLNGKVTIESKINHG TRIYIKIPLKLKEHPYA >gi|224999876|gb|ACJC01000124.1| GENE 55 54574 - 55398 406 274 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 6 274 10 281 285 160 38 1e-38 MKFTIPKQFNDYTLREIFQYLKLPKKDLHQLNMSKEILINEEYGTLLNNVKTGDYVEIPT PNEVSNYLPSYRYAQIYYEDDDLAIVMKPKGVKTHPNDLKESNTLMNHVIYTVDSEYVEP IHRLDQETVGLLIVAKNPLMKKILDRMLEYNEITRIYKANVKALLPIKPQTIDMPIGKDK FHSNKRRISNTGQRAITHIIDSKMIKEGVCQLNIKLDTGRTHQIRVHLAEIGHPVIGDPL YGTSTLRQLELNSHQIEFTHPLTQEIISVSLDDK Prediction of potential genes in microbial genomes Time: Sun May 29 07:50:27 2011 Seq name: gi|224999875|gb|ACJC01000125.1| Staphylococcus epidermidis W23144 contig00165, whole genome shotgun sequence Length of sequence - 45632 bp Number of predicted genes - 54, with homology - 54 Number of transcription units - 15, operones - 9 average op.length - 5.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 58 - 462 437 ## SERP1388 hypothetical protein - Prom 493 - 552 9.2 - Term 549 - 609 10.1 2 2 Op 1 . - CDS 614 - 796 343 ## SERP1389 hypothetical protein 3 2 Op 2 . - CDS 820 - 1419 834 ## SERP1390 glucosamine-6-phosphate isomerase family protein - Prom 1465 - 1524 12.1 4 3 Op 1 1/0.000 - CDS 1577 - 2047 367 ## COG0219 Predicted rRNA methylase (SpoU class) 5 3 Op 2 1/0.000 - CDS 2044 - 3174 1162 ## COG1600 Uncharacterized Fe-S protein - Prom 3201 - 3260 9.0 - Term 3265 - 3314 1.6 6 4 Op 1 34/0.000 - CDS 3537 - 4259 613 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 7 4 Op 2 1/0.000 - CDS 4252 - 5709 1390 ## COG0765 ABC-type amino acid transport system, permease component - Prom 5739 - 5798 9.6 - Term 5842 - 5894 1.1 8 4 Op 3 . - CDS 5949 - 7007 1031 ## COG3641 Predicted membrane protein, putative toxin regulator - Prom 7170 - 7229 9.9 - Term 7015 - 7075 5.6 9 5 Tu 1 . - CDS 7234 - 8082 969 ## COG3591 V8-like Glu-specific endopeptidase - Prom 8285 - 8344 13.7 + Prom 8481 - 8540 9.5 10 6 Tu 1 . + CDS 8624 - 9346 515 ## gi|242243082|ref|ZP_04797527.1| hypothetical protein HMPREF0791_1608 - Term 9372 - 9406 3.6 11 7 Op 1 . - CDS 9413 - 10330 1008 ## MCCL_0980 hypothetical protein - Term 10337 - 10379 3.8 12 7 Op 2 . - CDS 10384 - 10770 432 ## COG4824 Phage-related holin (Lysis protein) 13 7 Op 3 . - CDS 10772 - 11053 384 ## gi|242243085|ref|ZP_04797530.1| hypothetical protein HMPREF0791_1611 14 7 Op 4 . - CDS 11090 - 11500 542 ## gi|242243086|ref|ZP_04797531.1| hypothetical protein HMPREF0791_1612 15 7 Op 5 . - CDS 11521 - 14976 3315 ## COG4926 Phage-related protein 16 7 Op 6 . - CDS 14973 - 15743 521 ## SAK_0757 prophage LambdaSa04, tail protein, putative 17 7 Op 7 . - CDS 15746 - 19927 4885 ## COG5283 Phage-related tail protein - Term 19953 - 19986 -0.2 18 7 Op 8 . - CDS 19991 - 20203 252 ## gi|242243090|ref|ZP_04797535.1| hypothetical protein HMPREF0791_1616 19 7 Op 9 . - CDS 20251 - 20601 507 ## gi|242243091|ref|ZP_04797536.1| conserved hypothetical protein 20 7 Op 10 . - CDS 20625 - 21329 831 ## gi|242243092|ref|ZP_04797537.1| conserved hypothetical protein 21 7 Op 11 . - CDS 21335 - 21772 420 ## gi|242243093|ref|ZP_04797538.1| conserved hypothetical protein 22 7 Op 12 . - CDS 21772 - 22110 330 ## gi|242243094|ref|ZP_04797539.1| conserved hypothetical protein 23 7 Op 13 . - CDS 22110 - 22439 293 ## gi|242243095|ref|ZP_04797540.1| conserved hypothetical protein 24 7 Op 14 . - CDS 22411 - 22719 319 ## LMHCC_1371 hypothetical protein 25 7 Op 15 . - CDS 22746 - 23903 1631 ## BCAH187_A0661 Cps 26 7 Op 16 . - CDS 23928 - 24674 787 ## COG0740 Protease subunit of ATP-dependent Clp proteases 27 7 Op 17 . - CDS 24674 - 25810 1180 ## BMB171_C2339 phage portal protein HK97 28 7 Op 18 . - CDS 25826 - 27460 1244 ## COG4626 Phage terminase-like protein, large subunit 29 7 Op 19 . - CDS 27444 - 27782 313 ## BCA_1916 gp1 - Prom 27901 - 27960 12.2 30 8 Tu 1 . - CDS 28104 - 28394 240 ## COG1403 Restriction endonuclease - Prom 28468 - 28527 12.6 - Term 28599 - 28651 12.2 31 9 Op 1 . - CDS 28660 - 29280 653 ## gi|242243103|ref|ZP_04797548.1| hypothetical protein HMPREF0791_1629 - Prom 29304 - 29363 8.0 - Term 29415 - 29456 3.3 32 9 Op 2 . - CDS 29484 - 29975 488 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog - Prom 30145 - 30204 11.7 33 10 Op 1 . - CDS 30297 - 32171 1618 ## COG3378 Predicted ATPase 34 10 Op 2 . - CDS 32203 - 32391 253 ## gi|242243106|ref|ZP_04797551.1| hypothetical protein HMPREF0791_1632 35 10 Op 3 . - CDS 32459 - 33097 297 ## SAAV_0849 hypothetical protein 36 10 Op 4 . - CDS 33129 - 33440 576 ## SH1788 hypothetical protein 37 10 Op 5 . - CDS 33511 - 34242 570 ## BCAH187_A0647 hypothetical protein 38 10 Op 6 . - CDS 34249 - 34467 244 ## gi|242243110|ref|ZP_04797555.1| conserved hypothetical protein 39 10 Op 7 . - CDS 34498 - 34848 312 ## gi|242243111|ref|ZP_04797556.1| hypothetical protein HMPREF0791_1637 40 10 Op 8 . - CDS 34862 - 36493 1222 ## Cthe_1735 phage DNA polymerase - Prom 36568 - 36627 11.4 + Prom 36544 - 36603 13.3 41 11 Tu 1 . + CDS 36627 - 37064 250 ## gi|242243113|ref|ZP_04797558.1| hypothetical protein HMPREF0791_1639 + Term 37065 - 37092 0.1 42 12 Op 1 . - CDS 37092 - 37574 758 ## CLD_2432 hypothetical protein 43 12 Op 2 . - CDS 37626 - 37832 269 ## gi|242243115|ref|ZP_04797560.1| conserved hypothetical protein 44 12 Op 3 . - CDS 37851 - 39662 1874 ## Cthe_1737 phage NTP-binding protein 45 12 Op 4 . - CDS 39662 - 39973 241 ## CLD_2426 holliday junction resolvase Hjc 46 12 Op 5 . - CDS 39951 - 40268 351 ## gi|242243118|ref|ZP_04797563.1| hypothetical protein HMPREF0791_1644 47 12 Op 6 . - CDS 40271 - 41512 949 ## COG0553 Superfamily II DNA/RNA helicases, SNF2 family - Prom 41559 - 41618 4.3 48 13 Op 1 . - CDS 41660 - 41854 304 ## gi|242243120|ref|ZP_04797565.1| hypothetical protein HMPREF0791_1646 49 13 Op 2 . - CDS 41870 - 42193 388 ## gi|242243121|ref|ZP_04797566.1| hypothetical protein HMPREF0791_1647 50 13 Op 3 . - CDS 42248 - 42439 307 ## USA300HOU_1485 bacteriophage transcriptional regulator - Prom 42504 - 42563 5.9 + Prom 42494 - 42553 6.6 51 14 Tu 1 . + CDS 42600 - 42935 333 ## USA300HOU_1486 bacteriophage transcriptional regulator + Prom 42987 - 43046 11.6 52 15 Op 1 . + CDS 43091 - 43465 210 ## gi|242243124|ref|ZP_04797569.1| hypothetical protein HMPREF0791_1650 53 15 Op 2 . + CDS 43506 - 44237 570 ## gi|242243125|ref|ZP_04797570.1| hypothetical protein HMPREF0791_1651 54 15 Op 3 . + CDS 44283 - 45329 746 ## COG0582 Integrase - TRNA 45488 - 45571 61.1 # Leu CAA 0 0 Predicted protein(s) >gi|224999875|gb|ACJC01000125.1| GENE 1 58 - 462 437 134 aa, chain - ## HITS:1 COG:no KEGG:SERP1388 NR:ns ## KEGG: SERP1388 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 134 1 134 134 207 95.0 1e-52 MLRKYWIHFVIVTVIVSLLSIKGFPLALGALYLPLLFKIVQLQLNLSKGIIDNVNAHTFI KSNQSGVMISVVCCLLITGVLTYTLDDFYNELPGFLGVLVSISPVTLTIGVILFVLTAIA IVQATKAKYQQPKN >gi|224999875|gb|ACJC01000125.1| GENE 2 614 - 796 343 60 aa, chain - ## HITS:1 COG:no KEGG:SERP1389 NR:ns ## KEGG: SERP1389 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 57 1 57 59 62 96.0 5e-09 MANKKDSKLNYHEEENAMVTDLDDLKELGKEMEQISQENDEEKLNQPHDNEVRSDFKNSK >gi|224999875|gb|ACJC01000125.1| GENE 3 820 - 1419 834 199 aa, chain - ## HITS:1 COG:no KEGG:SERP1390 NR:ns ## KEGG: SERP1390 # Name: not_defined # Def: glucosamine-6-phosphate isomerase family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 199 1 199 199 367 98.0 1e-100 MAMNFKVFDNSEKVAEYTADILRKQFNNNPTTIAGFHLGKEHAPVFDELKKNVENHAVDF SQINILDYDDNHSYYEALGVPTGQIYSISYENDAIDFISDKIKTKENKGKLTMQVLTIDE NGKLDVSVRQGLMEAREIFLVITGANKRDMVEKLYRENGKTSFEPSDLKAHRMVNVILDK EAAAGLPEDVKEYFTARFA >gi|224999875|gb|ACJC01000125.1| GENE 4 1577 - 2047 367 156 aa, chain - ## HITS:1 COG:SA1672 KEGG:ns NR:ns ## COG: SA1672 COG0219 # Protein_GI_number: 15927429 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Staphylococcus aureus N315 # 1 156 1 156 156 270 85.0 7e-73 MTNHIVLYQPEIPANTGNIARTCAGTLTHLHLIKPLGFSTEDKMLKRAGLDYWEHVNITY HDSIEEFFANTEGHYYLLTKFGKQTYSDFNFSNTNEDYYFIFGKETTGLPDWVKEKYAKT ALRIPMSDNIRSLNLSNTAALLIYEALRQQDYPNLS >gi|224999875|gb|ACJC01000125.1| GENE 5 2044 - 3174 1162 376 aa, chain - ## HITS:1 COG:SA1673 KEGG:ns NR:ns ## COG: SA1673 COG1600 # Protein_GI_number: 15927430 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Staphylococcus aureus N315 # 4 374 5 375 375 671 84.0 0 MNNKLKKEIIDFAHSIGIDSIGFTTADPFDELKQKLEEYHAKGYASGFEESNISLRTEPK LSLPSARSIIAIAVGYPNKLKGAPKSVKGDRRGMFARASWGQDYHSIMRKRLDKLADFIK EKVPDVEIQSMVDTGVLSDRAVAERAGLGFTGRNGFVISPELGTWSYLGEMLVSIPFEPD DPLLDSCGDCTICVDRCPTGALVGNGQLNSQKCISFLTQTKGYLQDEYRYKIGNRLYGCD TCQQVCPKNRGINTQHDDIVLEPEILKPRLVPLLQMSNKKFKSTYGHLAGAWRGKKPIQR NAIIALAHFKEESAIPELKEVALNDPRPMIRGTAYWAIGQILEDDAIPFIDAHYENEIEE VQIEMKKGLQMRREQK >gi|224999875|gb|ACJC01000125.1| GENE 6 3537 - 4259 613 240 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 240 47 1e-62 MINIKNLNKKFGANEVLRDINLTVDKGEVVAIIGPSGSGKSTLLRCMNLLDVPSKGKVIF EDNELTQHNVQLDNLRQKMGMVFQNFNLFPHKKVIENVMLAPLLLHKDSKDQLKEKALYL LEKVGLKDKADSYPNQLSGGQKQRVAIARALAMEPDVMLFDEPTSALDPEVVGDVLKVMR QLANEGMTMVIVTHEMNFAKEISDKVVFMADGVVVESGTPQNIFENPQHSRTQNFLSRVL >gi|224999875|gb|ACJC01000125.1| GENE 7 4252 - 5709 1390 485 aa, chain - ## HITS:1 COG:SA1675_2 KEGG:ns NR:ns ## COG: SA1675_2 COG0765 # Protein_GI_number: 15927432 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Staphylococcus aureus N315 # 281 485 1 205 205 330 85.0 4e-90 MKCLFKMLSIIILMLSTFTLFISSSTYANEDENWTKIKNRGELRVGLSADYAPLEFEKTI HGKTEYAGVDIELAKKIAKDNHLKLKIVNMQFDSLLGALKTGKIDIIISGMTTTPERKKE VDFTKPYMITNNVMMIKKDEAKRYQNIKDFEGKNIAAQKGTDQEKIAQTEIEDSKISSLN RLPEAILSLKSGKVAGVVVEKPVGEAYLKQNSELTFSKTKFNEEKKQTCIAVPKNSPVLL DKLNQTIDNVKEKNLIDQYMTKAAEDMQDDGNFISKYGSFFIKGIKNTILISLVGVVLGS ILGSFIALLKLSKIRPLQWIAGIYIEFLRGTPMLVQVFIVFFGTTAALGLDISALICGTI ALVINSSAYIAEIFRAGINAVDKGQTEAARSLGMNYRQTMQSVVMPQAIKKILPALGNEF VTLIKESSIVSTIGVSEIMFNAQVVQGISFDPFTPLLVAALLYFLLTFALTRVMNFIEGR MSASD >gi|224999875|gb|ACJC01000125.1| GENE 8 5949 - 7007 1031 352 aa, chain - ## HITS:1 COG:SA1676 KEGG:ns NR:ns ## COG: SA1676 COG3641 # Protein_GI_number: 15927433 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Staphylococcus aureus N315 # 7 351 8 352 353 419 75.0 1e-117 MSHSQINGKRFFNNILNAVGAGVVIALLPNALLGELLKFFKEGNHVLETIFQLVTIIQSF MAFIIGVLAAHQFKFKGTGAAIIGISAMLGSGAVHYNGQTIELKGIGDIINVILVVILAC FIYMFLEGKLGSLEMIILPVLVPVISGLIGLLTLPYVQVITQSLGKLVNRFTELNPLLMS ILICVTFSLLMVTPISLVAIATAINLTGLGSGAANMGIVAACVTFLFGSLRVNSLGVNVV LLIGAAKMMIPVYLKHLIIAIPLTINGVICGIVAYILKIKGTALSAGFGYTGLVGPINAL NRMSGNPSMNIILLAIGYFVIPFVGAFIVHKICKKVLSTYSDEIYKFEISKD >gi|224999875|gb|ACJC01000125.1| GENE 9 7234 - 8082 969 282 aa, chain - ## HITS:1 COG:SA0901 KEGG:ns NR:ns ## COG: SA0901 COG3591 # Protein_GI_number: 15926635 # Func_class: E Amino acid transport and metabolism # Function: V8-like Glu-specific endopeptidase # Organism: Staphylococcus aureus N315 # 1 280 1 282 342 270 50.0 2e-72 MKKRFLSICTMTIAALVTTTMVNTSYAKTDTQSHNHSSLGTENKNVLDINSSSHNIKPSQ NKSYPSVILPNNNRHQIFNTTQGHYDAVSFIYIPIDGGYMSGSGVVVGENEILTNKHVVN GAKGNPRNISVHPSAKNENDYPNGKFVGQEIIPYPGNSDLAILRVSPNEHNQHIGQVVIP ATISSNTDTRINENITVTGYPGDKPLATMWESVGKVVYIGGEELRYDLSTVGGNSGSPVF NGKNQVIGIHYGGVDNKYNSSVYINDFVQQFLRNNIPDINIQ >gi|224999875|gb|ACJC01000125.1| GENE 10 8624 - 9346 515 240 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243082|ref|ZP_04797527.1| ## NR: gi|242243082|ref|ZP_04797527.1| hypothetical protein HMPREF0791_1608 [Staphylococcus epidermidis W23144] # 1 240 1 240 240 408 100.0 1e-112 MLNWITSVPASGWSAIAAGFSAIATIISVFISYKSFNHQKTKDEINLKPNLFLKGKEFKI YNNVRYYFDNIFEDIDLIETYPFKFIELRNISNEPIVDITVKCHYESHYKYEKIQKLEKE INNVKILYGNLNNLKSLNLESQDSFNEKTKIPILEKNEKGLISLPNGLWIDLWQDFIAHD HENLKNKNYCINFDISYSHSYSENPVHFTKKIVFTKIIDSEIKYNSKNTFKYETYVFPKL >gi|224999875|gb|ACJC01000125.1| GENE 11 9413 - 10330 1008 305 aa, chain - ## HITS:1 COG:no KEGG:MCCL_0980 NR:ns ## KEGG: MCCL_0980 # Name: not_defined # Def: hypothetical protein # Organism: M.caseolyticus # Pathway: not_defined # 1 299 1 301 301 391 61.0 1e-107 MAKEYLGEWNGVPVYTDFLPYGTRRTGQPLDTGNPIFAVYHDTGNPNSNAQQNVNYYKNT YLQDWASTASAHFFVDDEECIICVPLDEKAWHVIYDTPTDNYYFGDDANDAAFGGELCYF PDDRERSLKALDNFARVYAVLCPSWNIDHYNKAPGHQDIQDDKCDPGNALEACGYGRNEI DIIDNLVQRYIDGEDVDTDTVVKQPIENDEVIEKKPVGCTRVSVWSEEPYYRGTIKYDAS LRERAGNSFENYSFAREKDVLEAGSTVYIYEEIQDPQGNIWCRTYSPSNNGWVHKHTIEV EEKYK >gi|224999875|gb|ACJC01000125.1| GENE 12 10384 - 10770 432 128 aa, chain - ## HITS:1 COG:BS_yqxH KEGG:ns NR:ns ## COG: BS_yqxH COG4824 # Protein_GI_number: 16079644 # Func_class: R General function prediction only # Function: Phage-related holin (Lysis protein) # Organism: Bacillus subtilis # 6 124 9 127 140 69 34.0 2e-12 MEQVNNIQIDNFSSFFFTGSWTIIDILIILIGLDVISGVIKATREHTIKSSVANIGLAKK VGILMVVIVANLADIVFKADGMVVNGTVAFYIIGEAVSILENCSVIGVPLPELLTKRLGI TDDKNIKN >gi|224999875|gb|ACJC01000125.1| GENE 13 10772 - 11053 384 93 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243085|ref|ZP_04797530.1| ## NR: gi|242243085|ref|ZP_04797530.1| hypothetical protein HMPREF0791_1611 [Staphylococcus epidermidis W23144] # 1 93 1 93 93 141 100.0 2e-32 MSNKTRFYLVRTSKGTSEYSGEQKLKYNPYNYGYAVALEDEQPTFYDTEESANSIATTLN SLYKLTGVQAYVDVYKEEVKVIKVTNNSPSEVS >gi|224999875|gb|ACJC01000125.1| GENE 14 11090 - 11500 542 136 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243086|ref|ZP_04797531.1| ## NR: gi|242243086|ref|ZP_04797531.1| hypothetical protein HMPREF0791_1612 [Staphylococcus epidermidis W23144] # 1 136 12 147 147 206 100.0 4e-52 MLEIRNSDLVQAKSFLYDLKLKPKLSRHRTKLVKLIDEKIKDLSDASNEIIQQYAKKDEN GNPIINDNMVEFDSVENRIEFEKEDSILINEVSKINLDEYPNIYNSIQLALSELDVELDK EKAETYELLCELFKVE >gi|224999875|gb|ACJC01000125.1| GENE 15 11521 - 14976 3315 1151 aa, chain - ## HITS:1 COG:SPy1446_1 KEGG:ns NR:ns ## COG: SPy1446_1 COG4926 # Protein_GI_number: 15675355 # Func_class: S Function unknown # Function: Phage-related protein # Organism: Streptococcus pyogenes M1 GAS # 347 501 228 380 384 62 28.0 5e-09 MIYLQETNFYYNGLPLSQAYDDVIERDLNGIYKLIFKLPVNKSDQHKLVEKDSMLKATEH FREIGYNIFRVRYIDKEEDYVQFTAYQIIFDLAKKYVNPFFVNDLLPVDALKMWSQKFNE PPNLSIEYWSDTTDKRVTYYSNKQDDLKPRYALNVLVEMANQSDLDLDFYLNGISLGRIG RDTQFLYTTNKNITSFGQEDNYDEVITRIIATSKFKPEYDKEKLKKKQKEEVEALKTKQA EFNKRLADEKRQKRIEKEIKEAIRREELKKIRYKEQKNRSHKTMQVTVFKSSEEIENEIR EKYKAQQQKTDIQRQLAKEHAEKQKAEIAKLKAKHKEETELLNEEITLSVTVDSPLINEY PEVYEMSIENNDIKTVEELTTFAENYFSVQNIDKPNVSTKIGLEVLQNEEVHLGDTVIVR HIEQDIDVRNRVIATKYSPMDKKYLEVTFGSKTSNYATQNSNLSNSNTEMVIREYQSQLE QYLDFRLNTERENFNNHFEQETGLIRDKINETNQTSQASINVLDNKFTEEFNNVQNEFRT SLQNAQNQININKASYTSDKEVVQSKLTELYSKQNESKLYIDTKANDVTNEFNQSIERAK SEVLQATNFSNSATLEQINQINRKVDNMKIGAVNLLKGTSNYTTPFNNNKIVEFGKVIND QLYALEHEDSKGYFFWETNQFVKLEPNTDYVLSYDVIPKFEVGGAYTPIEIVNENGYSLK PRQFLFKNETIKEVKDKQRLTFKFNTGNQTNLRIYFTSTWPSKLVYIAKPQLEKGTVASD WSPNVDDLEKQINVVADSISSKAIEAVRGDINYLKSNILTADSVNANMVSVDSALIDKLM TNNLLVNNLTSNYTLTEKMKSKALESVYGNISNLRTRLITANSITSNAINVDYGLVNKLI SNETFVNTLTAKSAFINAIKAIDIDASRITSGVLRSTSGSMRWNLNANSLDYFDGAETNY YGHSRIIFHTTNNSIYQSNNGTCAFLHFSRTEGTQYPAIAVGTSGNLDDDSNTSSFSGIK CHTAKTSDNGLSQVGVISDEVIFNSHGGDVNTGGWTLENYRKGGSRVRAFYGNNTREYKY ELGQDGYRFNTVWTSGLNDRIKIVNYTDGYTGILSWNEKYGIQFSNYDVRVQYGKYWYSF GDILRGDSWRV >gi|224999875|gb|ACJC01000125.1| GENE 16 14973 - 15743 521 256 aa, chain - ## HITS:1 COG:no KEGG:SAK_0757 NR:ns ## KEGG: SAK_0757 # Name: not_defined # Def: prophage LambdaSa04, tail protein, putative # Organism: S.agalactiae_A909 # Pathway: not_defined # 1 253 1 239 241 68 24.0 2e-10 MIQFNALEYNGVKTSDFSFKVYVEVNDGINIPQRKTKIITTDQMHGALIKSSDNYSTIEK KYKFYVQGATLQEMAPLFKWLNSSFNDNGFSLSNHHTNYLKPYDNPGRYYNVLKVIVGNA YVDEFDGYEFDVTFTCQPFSYSDGSLDNKQLTVVFPEVRTITNTSGIHMYPQLEIETLNH NDSLVTIGEQTIHIVAPDNYLAIECFPGQQNVSDKNGLRNECMIGEFFKIPPGEHGISAT DNISKITINCRWGDLT >gi|224999875|gb|ACJC01000125.1| GENE 17 15746 - 19927 4885 1393 aa, chain - ## HITS:1 COG:lin2383 KEGG:ns NR:ns ## COG: lin2383 COG5283 # Protein_GI_number: 16801446 # Func_class: S Function unknown # Function: Phage-related tail protein # Organism: Listeria innocua # 116 1190 10 1071 1601 286 25.0 2e-76 MAELKRAGIKLTAEGSAQYKADLKSATAALQQMAAESKRNIAALGQNASASKRYGLAIKD LGNTAKLAQAKLDVLNTKQKQLANSSRVYASEINKLENQLKGAKGNTSQLSSALAELRSK ESLNNAELSRLNATIAKTETQMLKAKSAANQMTNEYRNAGGRFADVSEKMKSIGNNIDNT GTKAVNFGRTMTTRVTTPIVAGLGYAARAYVKFDDQMNQMKVQLDDGSVSAGKLKEQVSE LGKTSQDMAKQYGVAGESIRNGMNELIKKGFTFNQVTGAMPSILKATVASGDDFNSVMSV SSSVLEQFGLKVDDTNQMIKNTDRVTSVLTYTANKTSAGFADLGEAMQNVGPMAANNNQS LEDMASTLGVLSNRGIEGGEAGTYLMNALQNLATPTKEQARGLRDLGVAAFDANGKMRSF PDILEDIEKATSGMSDEQKNAALNTIFNTQAMKGINPLIQAGSKSIKDLSKSTKDASKYQ DDLSKKMGESASRNVAKMKESFKVLAETLGQQVVPAIIPLIDKATDLANKFGQLDKDTQG AILKIAAFAGAIGPLSLGLGSIVRSIGGTVKGIGTLARGFGKITSGASKVVGGAEKAAGG VSKFGSMAQKVGGFAPLLSNPYVLGFGAIVAASAGVGYLVYQNMHEDDNNHKAAVDQTKG KYQEWFDTVTNGASDAAGSQTKIQDATKKTGETYKKMTERLKKQNTDVQETLKTGWDGYE KRIEKTKYFSFGITIETTKHIEGLKEKLKDLGLSQKEISDAENRYKNYGTIIGSTFKNIG DVIGKHKKINSDMALATIKAVQSVTEQVVESINKEKEAQLNELKEKQELGVITKEQYQKE TQSITEEYDKRVNSIKSNQNKIKDILSTAARENRELNTKEIADITQAYMELSEKTGQSIS KNTEAQKFFSQNLREMVTESGLAALKQSGIIDDSTAKDIAKAKTTEDAIKKLKKALEDYD NKKLKEKDIKAKDKTTKEVKKADKAIDDHNAKKPKEKEIKAKDKTTKEVKKADKSLDDHN KKKADEKELKAKDEISDLTKKVKSSLKEIDDLKVEIKKLKAKDEVSKATKKAENAMKKYK EVKADIKKLKAKDEASEKAFKAKIKVLEYNNAKAEKKILKGKDEITALTKKVKSALNQIN DLKMEVKELKARGNASTKADEAKGKLDNFNNTKTPTKNLLATGNASPFTDTAQGKLNLFN GTGIPTKNLSANGNASSFTDSARNAVQRYNYTGIPTKRINVSSNAERQAYSAIDALNSIP RFVQSTINVVRNFFSNEHAEGGHIDAYAEGGNIQSHSVPGTYTGIVGEAGPEIFSVNRGN VTITPLNSREKMRGIEGVLQDYTNGNNAGNGVVVNINLNDTVIKEEADEDRLIRKMDQHL RRSLSEQQMIGGA >gi|224999875|gb|ACJC01000125.1| GENE 18 19991 - 20203 252 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243090|ref|ZP_04797535.1| ## NR: gi|242243090|ref|ZP_04797535.1| hypothetical protein HMPREF0791_1616 [Staphylococcus epidermidis W23144] # 1 70 1 70 70 104 100.0 2e-21 MTRETFLYDYDLSTIYMLIDQYNEQSFKNKLLGREFLSDKSIEEFAQDIDKIKDNRTESD YQEVRAVEFL >gi|224999875|gb|ACJC01000125.1| GENE 19 20251 - 20601 507 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243091|ref|ZP_04797536.1| ## NR: gi|242243091|ref|ZP_04797536.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 116 1 116 116 177 100.0 2e-43 MSIFKTKLKSFVSDITGETRTYKVNTALWLHLEEDYGIKQGNLTDLYQSENALTNAKIAT SILKANGLEVTLQELTEHVDEVSIDKFVAKFTETLLEDVSDSESNKSEKDKEGKSK >gi|224999875|gb|ACJC01000125.1| GENE 20 20625 - 21329 831 234 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243092|ref|ZP_04797537.1| ## NR: gi|242243092|ref|ZP_04797537.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 234 1 234 234 410 100.0 1e-113 MATTFEKKALLTGIGNGFFQVMKTEETPTTAPVYDEKVFEVPSLDKLKTKLEYKSKDIYL SSTLHSVLGKASKATITLDAGYLPDGFEEEVSGATKLADGVYGMGGKGTKKYFRFAFPII DENGEKIIINFPKCQIQPTDLNVESQGEDKKEQMQQFDIIAMPLATGKEEESNIYYKADL RKNKTLDERKLLETGFYNKTILTTLNKSGQTVETVTSESNSETSRTTDNSRLSS >gi|224999875|gb|ACJC01000125.1| GENE 21 21335 - 21772 420 145 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243093|ref|ZP_04797538.1| ## NR: gi|242243093|ref|ZP_04797538.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 145 1 145 145 264 100.0 2e-69 MSDVFGFDEAIQDLERYSSRANNINEKVYQEGIKMRDDARNIARGLGLYKTGKGVSGIDI ERVSNGVEIGWSNRPNFHLFFHEFGFHATGRKKGKRHTSRSSKGKRKRRYKTGTVYVPPK PHLRPAFDRGKDKFQNNIKKYIEGD >gi|224999875|gb|ACJC01000125.1| GENE 22 21772 - 22110 330 112 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243094|ref|ZP_04797539.1| ## NR: gi|242243094|ref|ZP_04797539.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 112 1 112 112 196 100.0 4e-49 MSVKSKIFEALQPLNIDMAHGFSYQMELPKIITNVVSHRAIRLSDRKHLKHIRYQISYFD KTPRDVEDDLILNSISDALEKANLNTTEWIEIIETDDEVDDTIFHYIIEVSI >gi|224999875|gb|ACJC01000125.1| GENE 23 22110 - 22439 293 109 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243095|ref|ZP_04797540.1| ## NR: gi|242243095|ref|ZP_04797540.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 109 1 109 109 182 100.0 4e-45 MKKMNQTYNDGILEFREKRVKYDKYHTVIGTFSYMVFKSWYRKLGITSEEQYRSMQVDTM VVMRVAIPRMKYLEPSMKVEIDGKEYGISRIYENYSKNEIELSLYEVHI >gi|224999875|gb|ACJC01000125.1| GENE 24 22411 - 22719 319 102 aa, chain - ## HITS:1 COG:no KEGG:LMHCC_1371 NR:ns ## KEGG: LMHCC_1371 # Name: not_defined # Def: hypothetical protein # Organism: L.monocytogenes_HCC23 # Pathway: not_defined # 1 95 1 96 99 74 46.0 9e-13 MYIPIDVLEKLKSRLHIVNSESDRNLEEMIEESIVKLQNTCGDFNIQENAQARELVFERV RYAYNDVLEHFEKNFSREITDLQMQLFFERSEQDEKNESNVQ >gi|224999875|gb|ACJC01000125.1| GENE 25 22746 - 23903 1631 385 aa, chain - ## HITS:1 COG:no KEGG:BCAH187_A0661 NR:ns ## KEGG: BCAH187_A0661 # Name: not_defined # Def: Cps # Organism: B.cereus_AH187 # Pathway: not_defined # 1 379 1 383 383 308 47.0 2e-82 MTIKFNKSEKFVNAKKAFVASLTNSELSEEKREEIVSDYVQALSDDVVTTIQNDVNTQIA DNAVLVSRGQSTLTSEEVRYFNQVAQDGLFKEEKVLPVTFIDKVFENLVKEHPLLNAIGV TNMGAVTEIITVDPSGAAVWGDLFGDIKGQVNAAFSKKRFDILKLTAFGAIPKDMLDLGP KYIADYMEKLLGEVMATGLETGFLNGGGSTQHQPIGLTKDVADNGGVSDKTSSGTLTFEP GATVVNEIKEVKKALSKNAKGVSRKVDGKVTLVLNPSDVASVSATSTVLTANGTYVTVIP GNIEIVESEVMAEGKALFFVKGQYVAGAGGKASLQAYDEAFAIEDARLYIIKQYANGLPL DNKAALVYDLNIATPKTTGRKNTSS >gi|224999875|gb|ACJC01000125.1| GENE 26 23928 - 24674 787 248 aa, chain - ## HITS:1 COG:STM0912_1 KEGG:ns NR:ns ## COG: STM0912_1 COG0740 # Protein_GI_number: 16764274 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Salmonella typhimurium LT2 # 56 181 94 219 225 110 44.0 2e-24 MKLNKIEHTFSSMKSETSDEHVLVISGAIGEGGYFYEGTSATDVRKALENVEAKTIRIKL NSPGGNAFDGLEIYNYLKDLDAHVIVEVTALAASAASIIAMGADEVIMRTGSTMMIHNAS TITYGNKDEMLKVYEYLAKIDTSIIDVYKEKTGLSTDEIKEMLNNETWFTASEAVEKGFA DSYETQTKEEKEITSYLNSNYSISQKIDVENEIKEIKNQISELQNQNDKNQEVKDKSVND NRLKSLLF >gi|224999875|gb|ACJC01000125.1| GENE 27 24674 - 25810 1180 378 aa, chain - ## HITS:1 COG:no KEGG:BMB171_C2339 NR:ns ## KEGG: BMB171_C2339 # Name: not_defined # Def: phage portal protein HK97 # Organism: B.thuringiensis_BMB171 # Pathway: not_defined # 26 378 11 362 368 299 44.0 1e-79 MGLLYDLFKSNRKTAEELGFSIASVSNKAHMKRLAINSCIELISKTISQVEFKVKDKNKY TKNSMYYKLNVKPNVNESATQFWQKAVYKLIYDNELLIIQNDTEDLLIADDFNVNEYAHV SNIYEHVRIGNFEYARTFKSDEVIYIKYNNENAEMILNDLYGDYGDLFARLIEFQMRKSQ VRSIVKIDSKWASDKKKMEKVNKFIESIYDNFKNKSFAIVPEQEGLQYKEQTLSQAANSV DDVEKVGKQFLNHCATKFGIPIQLLTGDIAEVEQNTKRFIRMTIKPLLNLIVTELNAKLF DKEEYLNDSKIIANTLPINFDNIFEIANQIDKLIASGVFVGNEIRRELGFEESKDPLMNE HLVTKNYQTLKQLKEGVN >gi|224999875|gb|ACJC01000125.1| GENE 28 25826 - 27460 1244 544 aa, chain - ## HITS:1 COG:SA1777 KEGG:ns NR:ns ## COG: SA1777 COG4626 # Protein_GI_number: 15927542 # Func_class: R General function prediction only # Function: Phage terminase-like protein, large subunit # Organism: Staphylococcus aureus N315 # 2 542 1 548 553 495 45.0 1e-140 MLVVNKYIIDYINQYKQGKILFNEERKQLVDYLEDFIFPRNDLYFNDEQIENLINFAKEF YFELDDFQKFLSAFLFLYYKEDNDIFYDQFFIMGGRGVGKNGLVSVWSHYFLSDYNPVDE YDISIVANTEKQAKTSFMEIYNCIERNNLDDYFRRNLKEITGKATNSKLQYHTSAPSSKD GLKDGMVIYDEIHRMESYDIINVFGSGLGKKDNPREIFIGSNGHVRGGVIDDMLDRANKI LKGEVLDDHMFCFLCKIDDVKEADDPYSWEKANPQFSKPMTPYAKNLYKRVIKEHQKLDN NLKYRAEFMAKRMNLPETDLTESVATADEVYKTNKEIPDLLHKTCVGGLDFGSVRDFTAV GLLFREGDDYYWKTHSFARKDYLEKAKLKPPIHEWADKGLLTIVDEPTIDPRHVVNWFVE MREIYNIEIIVADMYKLDIIRPLLEAEGFNVHSIRKPSAIHGLLAPRVESLFANNNLYWG KNPLMNWYTFNVYKNVTKDGNVQYLKKDEHRRKTDGFQAMIHALYKASEVLKDDVDFFLD ELHF >gi|224999875|gb|ACJC01000125.1| GENE 29 27444 - 27782 313 112 aa, chain - ## HITS:1 COG:no KEGG:BCA_1916 NR:ns ## KEGG: BCA_1916 # Name: not_defined # Def: gp1 # Organism: B.cereus_03BB102 # Pathway: not_defined # 1 102 1 102 103 67 39.0 1e-10 MPVSIKKIRESMLDRVDDSDFLVIEKIERYIALVKKYRQLITAINKEGLTINVNNSSQHY IKTHPSMSDVIKINKELLMLEDAIFKRSKVKKESSNDKPKTLSLRDRVASSK >gi|224999875|gb|ACJC01000125.1| GENE 30 28104 - 28394 240 96 aa, chain - ## HITS:1 COG:SA1779 KEGG:ns NR:ns ## COG: SA1779 COG1403 # Protein_GI_number: 15927544 # Func_class: V Defense mechanisms # Function: Restriction endonuclease # Organism: Staphylococcus aureus N315 # 6 96 3 99 99 66 41.0 1e-11 MLELDTKDKRNKFYHSTDWNQLRMKAYLRDNRECQHCKAEGKVVKGQNVHHIQPIDLRPD LALNIDNLITLCIDCHNKVHGRVYGGSRKQWNDEQW >gi|224999875|gb|ACJC01000125.1| GENE 31 28660 - 29280 653 206 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243103|ref|ZP_04797548.1| ## NR: gi|242243103|ref|ZP_04797548.1| hypothetical protein HMPREF0791_1629 [Staphylococcus epidermidis W23144] # 1 206 1 206 206 364 100.0 2e-99 MLTLSKGIEPGDWLTFFGTLVGALIGALIAGGIAIYVAHLQNKHQNNYIEKQNELDKRVK KYELNTKMINDSMHNLNDNYFRVTKLYYDLLTEKDKDSQRRLVGELIATKNKITNYTITY KDYLLKNTDFSNDSNDLKEATDKVINKTKSFGEELARIGSTSEVNGVNTSDVKCIGENIK SMAPLIYELNQELQNTLSQQLKRTYK >gi|224999875|gb|ACJC01000125.1| GENE 32 29484 - 29975 488 163 aa, chain - ## HITS:1 COG:BS_xpf KEGG:ns NR:ns ## COG: BS_xpf COG1595 # Protein_GI_number: 16078321 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Bacillus subtilis # 1 158 1 162 169 66 31.0 3e-11 MLDLLMSYLLSKNKVLKRIKNLMQCDVVDINELALNKQILSDINYVIEWLREGHEPNNYN AIDKRQCYLVNPETIEKMIDQSMYQKPSEDEYSDFIHDVNHQSYYALMKLTKQELDVFLM HKCEQLSLNDVAGLLNISKSAAQSYLKRAVNKINSEMQCNLFL >gi|224999875|gb|ACJC01000125.1| GENE 33 30297 - 32171 1618 624 aa, chain - ## HITS:1 COG:L37667 KEGG:ns NR:ns ## COG: L37667 COG3378 # Protein_GI_number: 15672011 # Func_class: R General function prediction only # Function: Predicted ATPase # Organism: Lactococcus lactis # 276 599 165 484 542 122 29.0 2e-27 MYKGYLKSKGKRTITKFKENSDVLLNYKQARSFKSFVGVLDDDYIMIDVDDINEAEILLN IIEDEQIHCNVLSTDKGMHFYFKGYNMTTNKTKNYTAIGIMCDFKLGCRNSCDPLKINGT FRKWIKRVEDEQLDELPKWLEASFKNDPGFSELGEGDGRNQTLFNYILKLQQIAFSKDEI RNTIRIINKHILYEPISDKELDVILRDEAFLKESFFINGKFQHDLFAKFLISEYHIIRIA DILHIYIDGYYSDKQDDIERLMIKHIPGLKKIQRQETLSYLQLQTKQKELSPVNYLTLAN GIYDLNTNSMQSFTPEIIVKNKIPVPYIENSYHEITDKTFNKLAVNDHELRNLFEEILGY TLFRRNEYGKFFILTGGGSNGKSSFLKILRALVGDTNTSSVALKDVNGRFKTAELFGKLV NLGDDIGKGFIKDSAELKNLATGETLVVERKGKDPFDLRNYAKLIFSANEVPRIDDKTDG LNRRLMIVPFKAKFTNTDIDYDPFIIDKLLSPDSLQYCLVMAIRGLNRLLKNNRFTKPKT VTAEIEAYKERNNPVLAFLNNEEPKLENESTKDIYTQYSEYCVEYGYKSVSRAVFTKEVC RLKKVESKQIRVNGIREHIYVLCT >gi|224999875|gb|ACJC01000125.1| GENE 34 32203 - 32391 253 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243106|ref|ZP_04797551.1| ## NR: gi|242243106|ref|ZP_04797551.1| hypothetical protein HMPREF0791_1632 [Staphylococcus epidermidis W23144] # 1 62 1 62 62 69 100.0 7e-11 MINQNCNDTELTTEVVNKLKELHKLDDKLNNQEVNELINFYKKVLARIENEVLQKLDNIV NE >gi|224999875|gb|ACJC01000125.1| GENE 35 32459 - 33097 297 212 aa, chain - ## HITS:1 COG:no KEGG:SAAV_0849 NR:ns ## KEGG: SAAV_0849 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_ED98 # Pathway: not_defined # 1 210 1 213 216 191 56.0 1e-47 MNIEFLGSIYTLAGGVALYSIKEFVKYFSDSKLHRKKLNLEKLYPIYLECFKKARTMINS YFINKEKLDLNDIEISAGLNDVNKESYDNDINYRQRINLSNKVKNMEALKNDFSDVFNIN KIFFNNDFVAKTFDIINEFERDISYLKNIITNMENSNEYFKIESFITPEYQRKINDYIFY LDQFEDEFKKHFKINRLTWKEKIRIWKSKRNK >gi|224999875|gb|ACJC01000125.1| GENE 36 33129 - 33440 576 103 aa, chain - ## HITS:1 COG:no KEGG:SH1788 NR:ns ## KEGG: SH1788 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 3 103 2 102 104 158 85.0 5e-38 MNNTLDQLIKNVEQWSINKGLNNGNSDRQALKFYEEAGEIAAALSRSDKDALKDGIGDTV VTLIILAQQHGWTLEECLQYAYDEIKDRKGKTINGTFIKESDL >gi|224999875|gb|ACJC01000125.1| GENE 37 33511 - 34242 570 243 aa, chain - ## HITS:1 COG:no KEGG:BCAH187_A0647 NR:ns ## KEGG: BCAH187_A0647 # Name: not_defined # Def: hypothetical protein # Organism: B.cereus_AH187 # Pathway: not_defined # 6 236 1 234 239 105 33.0 2e-21 MKETKLLYIWEPIYNKTTIVTKDYFKDLVGNKKSISSYIVNAIKKGTYLPKLNCYISKEP LTVSEKRKRIAKLKFKNEIWKESNLSGLFISNEGRFRRKTLTGYIYTFPYLRKNHMTIKY QSKEYVVKRLVYQTFIGILGNDERIYSKNGIKEDFRPSNLKKVSMTELGKLTGYKSKSKG IVYVSKKGKLIREFKSTREAERITLYNRQTINESCNNARKNYHSLGYRAFLWSDEYYNSE KED >gi|224999875|gb|ACJC01000125.1| GENE 38 34249 - 34467 244 72 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243110|ref|ZP_04797555.1| ## NR: gi|242243110|ref|ZP_04797555.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 72 1 72 72 136 100.0 5e-31 MNDKVNQPKHYQFGKFNAHTIIETVAKTYTSTAVFYHVGNALKYLLRAPRKNGLEDLKKA KKSIDFAINCWK >gi|224999875|gb|ACJC01000125.1| GENE 39 34498 - 34848 312 116 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243111|ref|ZP_04797556.1| ## NR: gi|242243111|ref|ZP_04797556.1| hypothetical protein HMPREF0791_1637 [Staphylococcus epidermidis W23144] # 1 116 1 116 116 197 100.0 2e-49 MKKIKVLINREGLDKYLLTHNMTLLDLANAIYIDRTYMYRLANGKCYVSGRIRELIMRHL NTEFEDIFITKEITYVDRRFKIPELHISKSELNQLLERQSKEITIGNEKVIIKIID >gi|224999875|gb|ACJC01000125.1| GENE 40 34862 - 36493 1222 543 aa, chain - ## HITS:1 COG:no KEGG:Cthe_1735 NR:ns ## KEGG: Cthe_1735 # Name: not_defined # Def: phage DNA polymerase # Organism: C.thermocellum # Pathway: not_defined # 1 534 28 561 563 591 58.0 1e-167 MIINDKQELEQFYKKHKGDFWIGYNSRDYDQWILKGILSDFNPKEINDFIIVHKKKGWEF SQLLHKIKLLNYDVQTSFHSLKQLEGFMGNDIRETSVDFNTRKKLTHEQLKEVIKYCKHD VEQTIQVFMKRFEEFQSHIALIQTFDLPMKNISKTKAQLSAMILDAKQPKVKRDDEMEFS IPNNLKINKYREVVTFYEITRDYDKSLKTTIAGVPHEFAWGGLHGARKNYFAKGYFLNVD VASYYPALMIEYDYLSRNVPNKKKYRQIRDKRLELKAKKDKRQAPFKIVLNSTYGAMKDK YNGLYDPRQANNVCIAGMLLLLDLIEKLEPYCEIIQSNTDGILIKMSSFNDFELIDDICF EWEERTHMELEFDHFTHVIQKDVNNYILVNERKGIYKSKGTYVKKLNDLDNDLPIVNKAV VDYFVKDIPVEKTIRECNDLIQFQKIVKVSGKYQHAIYGHKVMNERVFRVFASNNSNDKS LMKVKNNKPEKIGYTPNKCFIDNKNIAQKKTPLHLDKEWYIAIAKKRINDFKGEHTKQLE FKI >gi|224999875|gb|ACJC01000125.1| GENE 41 36627 - 37064 250 145 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243113|ref|ZP_04797558.1| ## NR: gi|242243113|ref|ZP_04797558.1| hypothetical protein HMPREF0791_1639 [Staphylococcus epidermidis W23144] # 1 145 1 145 145 179 100.0 5e-44 MKECIKENCLPLILIILYLIAGIYAFLNMNKFLNSNEFNHSILKEIIDKFSANFIFSGYL SIGIGSILIVLLTILYIFFKGNPFKGVINFIFVLFVTLFVFMIVIFSLSITTDNAESFIA FIGLVWAMIKFLPLIYKKITEYIKF >gi|224999875|gb|ACJC01000125.1| GENE 42 37092 - 37574 758 160 aa, chain - ## HITS:1 COG:no KEGG:CLD_2432 NR:ns ## KEGG: CLD_2432 # Name: not_defined # Def: hypothetical protein # Organism: C.botulinum_B1 # Pathway: not_defined # 7 158 5 151 152 97 40.0 2e-19 MTETINWDKFDKQVDSEEIKNAVEDAKNNDFPDIPDGEYEVALENMVLKQSKNGDPMLTI TFVILEGEFADNKIWYNGVMQPKNEKAIGFQVHKNNVFLRSLLDLAEDDESRVFFKGFKQ YNDLVLDLAEELVEAEFALEITTDKKGYQQYKITEVFETD >gi|224999875|gb|ACJC01000125.1| GENE 43 37626 - 37832 269 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243115|ref|ZP_04797560.1| ## NR: gi|242243115|ref|ZP_04797560.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 68 1 68 68 87 100.0 3e-16 MKKELNTTEQYFATTRNEAERIIEQAREEEKSNLTSQKIDSKTNKYGEYFVVTLKFTYNT PKDIMAYE >gi|224999875|gb|ACJC01000125.1| GENE 44 37851 - 39662 1874 603 aa, chain - ## HITS:1 COG:no KEGG:Cthe_1737 NR:ns ## KEGG: Cthe_1737 # Name: not_defined # Def: phage NTP-binding protein # Organism: C.thermocellum # Pathway: not_defined # 1 568 1 529 530 474 49.0 1e-132 MQFSYSRVDLFKRCPYHFKLRYIDRLTELPNYEANSPLIVGHALHTGIEKGKKAMLKEFY NAFPLVTNDVINEAIKLEHNLEKAKEWLSDFNNSFSFTGGYVFIHEYEINKPEFIGFVDL IVKRKGTNDIAIIDFKYSNAIEKYKESPQLQIYKYYLEQEGYNVIAMGYLFLPKTSIRQK KDEDLIQFRKRLNVTMRKLKTTCLKIEPQEMEIIYFLNECKEIKEAIQEKTFNWIKNPND ECFACNPRFAPEYLEQLRDDKGELIMTLPKNIRREKKIDERPDFWIYGDSYVGKSTFVDK FDDLLFLNTDGNTDNTTSPVINIKDEVVKEGRITKRTFAWEQFLNVVSELETDKDSGFKA IAIDLFEDLREHCRIYVFDKNGWEHESDGGYGKGWAMVKTEFNNAIKRLKNLGYQIIYIS KEVKSETTLKGGAVRTNFIPNIDDKTANFTTGTVDLTIRAFMNSDGVRLLQLSKQRNVFG GGRFNFLNDTCELSKDEFIQELINAQKASHAKITAKIKPIKEEIKEDKSVKQTVKEETKG TEEVPPGETITDKEEVIEEPKRKTRKRKSSTKEAVEEAKAEEKEETLDEKPKRTRRSRRK KTE >gi|224999875|gb|ACJC01000125.1| GENE 45 39662 - 39973 241 103 aa, chain - ## HITS:1 COG:no KEGG:CLD_2426 NR:ns ## KEGG: CLD_2426 # Name: not_defined # Def: holliday junction resolvase Hjc # Organism: C.botulinum_B1 # Pathway: not_defined # 13 100 4 90 98 71 39.0 1e-11 MKVVPLTKTYKNEAAFQNDFMQFLKHNPNAFAVKYWAGNKFTVNGIPDVLACINGVFHGI ELKTNTGVVRGIQKERMKQIKLAGGEAYVLRPKDFEEWKRTWF >gi|224999875|gb|ACJC01000125.1| GENE 46 39951 - 40268 351 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243118|ref|ZP_04797563.1| ## NR: gi|242243118|ref|ZP_04797563.1| hypothetical protein HMPREF0791_1644 [Staphylococcus epidermidis W23144] # 1 105 3 107 107 198 100.0 1e-49 MIENLNLRYTEDILNNTNWINKDGEILDPISMDEGHIQNTLRLLYRNRDQLWLGCRDFTL IDVYLNGEDFFQKVIRKSTLWKSLIKALNKPSTSFNFDYEGGSID >gi|224999875|gb|ACJC01000125.1| GENE 47 40271 - 41512 949 413 aa, chain - ## HITS:1 COG:PA0799 KEGG:ns NR:ns ## COG: PA0799 COG0553 # Protein_GI_number: 15595996 # Func_class: K Transcription; L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicases, SNF2 family # Organism: Pseudomonas aeruginosa # 27 412 218 639 663 85 23.0 1e-16 MYIQLFPHQERALEQTEQFNNVAYYLDMGLGKTFVGSEKLWELNSPYNLVICQKSKLEDW YQHFKEYYSDDYKVILFDREKLEYIEENSILIINYEKAIVRPELKKIRNFTLLLDESQYI KNPKSQRTKLIMNELKPSNVILLSGTPIDGKYEELLTQINLLGWKIKEKMFLSHYTYREW DEKEMKYKIVGYKNIDRLKRKLRNYGCVFMKTEEVFDLPKQTNIFLKPKKTKEYDEFIRE GIVQLKDRKLIAETASVGTMNARLLCTAFNQNKLSMLKDLLESTEDRLIIFYQYNLEKEA IENVVKELNKPISYINGDLVDKNAYENKKSSITLVQYQSGSFGHNLQKANKIIFFGLPNR VSFFEQSRKRTHRIGQERPCFYYYMLTLGTYEWKNYQTLVDGKDYNDELFKEE >gi|224999875|gb|ACJC01000125.1| GENE 48 41660 - 41854 304 64 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243120|ref|ZP_04797565.1| ## NR: gi|242243120|ref|ZP_04797565.1| hypothetical protein HMPREF0791_1646 [Staphylococcus epidermidis W23144] # 1 64 1 64 64 83 100.0 5e-15 MDKSFLAFIIADFIFITMSILLGLLGVYFTTAIGWGALIAIIAFLFYDLYFFRKVIKTIK HGNA >gi|224999875|gb|ACJC01000125.1| GENE 49 41870 - 42193 388 107 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243121|ref|ZP_04797566.1| ## NR: gi|242243121|ref|ZP_04797566.1| hypothetical protein HMPREF0791_1647 [Staphylococcus epidermidis W23144] # 1 107 1 107 107 201 100.0 1e-50 MIELLNLDVLNNIIDSRILMNSPQNKEDELTAWWDIEDLKRECKKGNQWCIDMLNYPPFK NELTKLKIVYYPKHNREGYSMVAKQMKQWLIENHSIIRESASIFRTS >gi|224999875|gb|ACJC01000125.1| GENE 50 42248 - 42439 307 63 aa, chain - ## HITS:1 COG:no KEGG:USA300HOU_1485 NR:ns ## KEGG: USA300HOU_1485 # Name: not_defined # Def: bacteriophage transcriptional regulator # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 63 1 63 63 79 66.0 4e-14 MLEQLTIKKWRVMNDMLQQDVADKLGVTRKTVGEWEKEGANISNVTVYALAKLFNIEIDQ IKV >gi|224999875|gb|ACJC01000125.1| GENE 51 42600 - 42935 333 111 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_1486 NR:ns ## KEGG: USA300HOU_1486 # Name: not_defined # Def: bacteriophage transcriptional regulator # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 106 1 107 109 103 57.0 2e-21 MGTKSARKIFSENLQRLMRNKNVDQKELAEAIGVTQPTISNWIKEVKYPRIKRIQTLADY FNVPKSELTEENFVVSKNQIAAHITPDVTEDEMREIINFIEYIKSKRNSDK >gi|224999875|gb|ACJC01000125.1| GENE 52 43091 - 43465 210 124 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243124|ref|ZP_04797569.1| ## NR: gi|242243124|ref|ZP_04797569.1| hypothetical protein HMPREF0791_1650 [Staphylococcus epidermidis W23144] # 1 124 1 124 124 199 100.0 4e-50 MHQYKELIDDINIKYIEMPNKLECLISGNDLYINERLSSSSYIRETSESYYSQSNKVTSL IPLNQIENAVITHNCTTLLKLSEFFKLPTTFIFLNLYFYSIKYSNLSFLNIFQIKRLNFN QIDT >gi|224999875|gb|ACJC01000125.1| GENE 53 43506 - 44237 570 243 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243125|ref|ZP_04797570.1| ## NR: gi|242243125|ref|ZP_04797570.1| hypothetical protein HMPREF0791_1651 [Staphylococcus epidermidis W23144] # 1 243 1 243 243 419 100.0 1e-116 MLTNLFTILWLIISIIFITFITITFVKGIKQKRYKPFLIFSIITFIVGLICFILMMIFYN IKPDNFKTLTLKDGYYEVGKDIKPGHYEIKSKDNKGYIAIKGKSDYRSLNEEFGNKYGTK NKPTVPSVTTYLFKGDKISLDNTVLTTFKQVENKKINKLSAGMWIVGKDIEPGKYKVHLT YPREYGGTINILTYNFTDKSYFLSGEEAEDIGVKEFEVELKENQDFIIHHIYSVTLDKEK TSQ >gi|224999875|gb|ACJC01000125.1| GENE 54 44283 - 45329 746 348 aa, chain + ## HITS:1 COG:SA1810 KEGG:ns NR:ns ## COG: SA1810 COG0582 # Protein_GI_number: 15927578 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 7 348 8 345 345 200 35.0 3e-51 MKVTKRGNSWQYDFRFEGKRYRKTSFKTKRDATQAANKLLNDLTKGLITNNKITLTKYLN DWKEIYIKEYVSSKTYKNYCRYCEKVEYYFKDKPLDKITRNEYQLFLTNFKDNLSQDQLS RLNKFITKAISTAIFDGLITKDFTFNVKVESSKPPIKQESDKFFNIDELKKIKDYYLSKT KYYSASTHLILLMIETGGRFSDCINLTRKDINELNLEIFLNGTKNKSAPRYVSVSKTLIQ ILLKYIENHTSSIEGYVFINNGKQITNSSVNKSIREACSKLNIHRNLTSHAFRHTHASML IHEGLNIYYISKRLGHSSIDVTLKDYGHLLKETYEQDNKKALKLIENL Prediction of potential genes in microbial genomes Time: Sun May 29 07:53:37 2011 Seq name: gi|224999874|gb|ACJC01000126.1| Staphylococcus epidermidis W23144 contig00167, whole genome shotgun sequence Length of sequence - 644 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 643 457 ## SH0326 hypothetical protein Predicted protein(s) >gi|224999874|gb|ACJC01000126.1| GENE 1 1 - 643 457 214 aa, chain - ## HITS:1 COG:no KEGG:SH0326 NR:ns ## KEGG: SH0326 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 214 284 497 3608 203 93.0 3e-51 DFGSTVATNDSNSSSNSTSAINLRTFSRLATTTFAAAAATSTTNTYTGAGTDTNYNIPIY YKLTTVNNGTSMTFTYTVTYDNPATTTVERPTALSNSYAIYNTGTTNQTMFTLGSAYGTP STATSYITDSTGAQVSNPRANTTNINKQGSGYTWANGYQMNGAQAKQGYGLTTTWTVPIN SSGDTSFTFNPYSTSVTGGTNFFNGQKVTVTDPT Prediction of potential genes in microbial genomes Time: Sun May 29 07:53:50 2011 Seq name: gi|224999873|gb|ACJC01000127.1| Staphylococcus epidermidis W23144 contig00168, whole genome shotgun sequence Length of sequence - 36344 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 23, operones - 6 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 351 335 ## SERP2281 serine threonine rich antigen - Prom 469 - 528 9.0 + Prom 768 - 827 7.0 2 2 Tu 1 . + CDS 942 - 1181 318 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Prom 1309 - 1368 16.5 3 3 Op 1 10/0.000 + CDS 1395 - 1820 597 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 4 3 Op 2 4/0.000 + CDS 1869 - 2204 353 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 5 3 Op 3 8/0.000 + CDS 2243 - 3007 795 ## COG2207 AraC-type DNA-binding domain-containing proteins 6 3 Op 4 . + CDS 3051 - 3194 125 ## COG2207 AraC-type DNA-binding domain-containing proteins - Term 3848 - 3897 11.6 7 4 Tu 1 . - CDS 4061 - 4243 174 ## SSPP203 replication-associated protein - Prom 4265 - 4324 12.6 - Term 4643 - 4681 2.2 8 5 Tu 1 . - CDS 4720 - 7836 2344 ## COG5610 Predicted hydrolase (HAD superfamily) - Prom 8000 - 8059 7.2 9 6 Tu 1 . + CDS 8402 - 8896 354 ## COG1755 Uncharacterized protein conserved in bacteria - Term 9705 - 9759 16.0 10 7 Tu 1 . - CDS 9809 - 11293 1921 ## COG0579 Predicted dehydrogenase - Prom 11319 - 11378 8.3 + Prom 11388 - 11447 3.5 11 8 Tu 1 . + CDS 11493 - 12473 226 ## PROTEIN SUPPORTED gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase + Term 12510 - 12547 2.3 12 9 Tu 1 . - CDS 13059 - 13445 316 ## SLGD_01899 hypothetical protein - Term 14123 - 14161 7.2 13 10 Tu 1 . - CDS 14179 - 15036 941 ## SERP2417 putative lipoprotein - Prom 15115 - 15174 9.9 + Prom 15057 - 15116 7.3 14 11 Tu 1 . + CDS 15335 - 16084 889 ## SSP0056 hypothetical protein + Term 16089 - 16139 8.5 + Prom 16237 - 16296 8.7 15 12 Tu 1 . + CDS 16435 - 16770 243 ## SAV2477 hypothetical protein + Term 16814 - 16869 14.4 - Term 16800 - 16857 2.6 16 13 Tu 1 . - CDS 17018 - 17203 165 ## SE0151 hypothetical protein - Prom 17380 - 17439 5.3 - Term 17411 - 17455 5.8 17 14 Tu 1 . - CDS 17517 - 18428 1277 ## SE0149 hypothetical protein 18 15 Tu 1 . + CDS 18923 - 19456 551 ## COG3153 Predicted acetyltransferase + Term 19632 - 19681 9.9 - Term 19620 - 19667 6.5 19 16 Tu 1 . - CDS 19699 - 20667 871 ## COG0668 Small-conductance mechanosensitive channel - Prom 20744 - 20803 4.7 - Term 20686 - 20725 5.1 20 17 Tu 1 . - CDS 20939 - 21724 592 ## SERP2422 putative lipoprotein - Prom 21841 - 21900 7.3 - Term 21835 - 21889 4.2 21 18 Tu 1 . - CDS 22062 - 22847 676 ## SE0142 hypothetical protein - Prom 23077 - 23136 13.5 - Term 23010 - 23062 12.5 22 19 Op 1 4/0.000 - CDS 23244 - 24128 842 ## COG0701 Predicted permeases - Prom 24148 - 24207 5.3 23 19 Op 2 . - CDS 24216 - 24536 304 ## COG0640 Predicted transcriptional regulators + Prom 24924 - 24983 9.8 24 20 Op 1 . + CDS 25060 - 25407 507 ## SERP2427 arsenical resistance operon trans-acting repressor 25 20 Op 2 2/0.000 + CDS 25373 - 27118 1770 ## COG0003 Oxyanion-translocating ATPase + Prom 27187 - 27246 4.3 26 20 Op 3 7/0.000 + CDS 27304 - 27582 139 ## COG0640 Predicted transcriptional regulators 27 20 Op 4 3/0.000 + CDS 27585 - 28874 1413 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 28 20 Op 5 . + CDS 28891 - 29286 381 ## COG0394 Protein-tyrosine-phosphatase + Term 29294 - 29328 6.2 - Term 29278 - 29322 6.2 29 21 Op 1 1/0.167 - CDS 29347 - 30087 646 ## COG0730 Predicted permeases 30 21 Op 2 . - CDS 30102 - 30344 259 ## COG1937 Uncharacterized protein conserved in bacteria - Prom 30462 - 30521 6.4 + Prom 30341 - 30400 6.0 31 22 Op 1 1/0.167 + CDS 30501 - 31571 1238 ## COG2210 Uncharacterized conserved protein 32 22 Op 2 . + CDS 31590 - 32918 1416 ## COG0491 Zn-dependent hydrolases, including glyoxylases + Term 32937 - 32995 6.4 - Term 33290 - 33351 10.1 33 23 Op 1 . - CDS 33391 - 33936 555 ## USA300HOU_0085 lipoprotein 34 23 Op 2 . - CDS 33954 - 35957 2090 ## COG2217 Cation transport ATPase Predicted protein(s) >gi|224999873|gb|ACJC01000127.1| GENE 1 3 - 351 335 116 aa, chain - ## HITS:1 COG:no KEGG:SERP2281 NR:ns ## KEGG: SERP2281 # Name: not_defined # Def: serine threonine rich antigen # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 116 1 115 1870 107 58.0 1e-22 MTKKIKQFKDSFNEEKARVRLYKSGKNWIKAGIKEIQLLRVMGLPFNGQKITDKEDVNAN NNSNNMKKNISKASAVIGGAFTFNMLNDHQAFAASETPVTSEISSNSTTVGDQTST >gi|224999873|gb|ACJC01000127.1| GENE 2 942 - 1181 318 79 aa, chain + ## HITS:1 COG:SAP015_2 KEGG:ns NR:ns ## COG: SAP015_2 COG1961 # Protein_GI_number: 16119215 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 76 55 130 165 128 92.0 2e-30 MITSLPMMNEVISNPLLDKFMKDLIVQILAMISEQERNESKRRQAQGIQVAKDKGIYKGR PLLYSPNAKDPQKRIIIIV >gi|224999873|gb|ACJC01000127.1| GENE 3 1395 - 1820 597 141 aa, chain + ## HITS:1 COG:L142816 KEGG:ns NR:ns ## COG: L142816 COG1028 # Protein_GI_number: 15673291 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Lactococcus lactis # 4 141 3 142 270 195 70.0 2e-50 MKKVILITGATSGIGYETAAYLANQGNIVYGAGRRVENLEGLKKVKPIQLDMTDESSMQL VVDTIIETEGRIDVLVNNAGYGSYGAIEDVTIEEAKQQFEVNVFGLARLTQLVLPHMREQ RSGRIINTSSMGGRLTTYFGA >gi|224999873|gb|ACJC01000127.1| GENE 4 1869 - 2204 353 111 aa, chain + ## HITS:1 COG:L142816 KEGG:ns NR:ns ## COG: L142816 COG1028 # Protein_GI_number: 15673291 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Lactococcus lactis # 1 111 160 270 270 157 67.0 6e-39 MEVAEFGIDVSVIEPGGIKTDWGFIAADKLADSAKGGAYEATALKTSKGMRKQYSSNMLS NPMVVTKAISKAIDSNKPKPRYLIGFAAKPLVFLHAILPTRLFDKIMKSAS >gi|224999873|gb|ACJC01000127.1| GENE 5 2243 - 3007 795 254 aa, chain + ## HITS:1 COG:L143624 KEGG:ns NR:ns ## COG: L143624 COG2207 # Protein_GI_number: 15673292 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 1 249 1 250 324 182 38.0 6e-46 MKLTISKQLQAFIESLGMRFEQFLAESDIPNYMWKEELTVSNEQYYRLLQTMDKYVTDEQ ILVFSDVKNINMFIPPIFAALSAENGIAALERLSKCKKLIGPINFEITQHDQTVAIHFSF LYPEQALPKFAVLNEQLLVLSLLRTGTGKQIDPIAISSPYNYSDIIAKTFNIHVEQTDSN LLVFNRKDLVYPFATYNNVMWEFLEGEFNHRLAELSNNQKFTSTIQSILFNLIPRGNFTL EDIAKNIGLKKSIC >gi|224999873|gb|ACJC01000127.1| GENE 6 3051 - 3194 125 47 aa, chain + ## HITS:1 COG:L143624 KEGG:ns NR:ns ## COG: L143624 COG2207 # Protein_GI_number: 15673292 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Lactococcus lactis # 1 45 277 321 324 57 48.0 6e-09 MAINYIKNYHIEIDEVAYLIGYSETSSFLRAFKKWTGQTITEFKETY >gi|224999873|gb|ACJC01000127.1| GENE 7 4061 - 4243 174 60 aa, chain - ## HITS:1 COG:no KEGG:SSPP203 NR:ns ## KEGG: SSPP203 # Name: not_defined # Def: replication-associated protein # Organism: S.saprophyticus # Pathway: not_defined # 1 55 1 55 228 69 81.0 4e-11 MKIMKQIADELNVTKMTVYNNAKKANVKFQKIESVNYLSPEDEVIVANRIKKSTNISFRK >gi|224999873|gb|ACJC01000127.1| GENE 8 4720 - 7836 2344 1038 aa, chain - ## HITS:1 COG:Cj1432c_2 KEGG:ns NR:ns ## COG: Cj1432c_2 COG5610 # Protein_GI_number: 15792750 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Campylobacter jejuni # 382 702 3 316 664 164 34.0 1e-39 MRNKKIWIFNATNDFVGNPKWLFIYVNKYRKDIDAYWMCDNVHVVNYVKSLGFNAELFHS KKAEKIKSVAGVFVVHQVKEHIPVKFENEVVILNLWHGVGIKPIERFVDSPGIRYRTYKK YIKYNEMYHNNQLFLVTSPLMEQHFTKMLNLDEDQIIRAGYPANMFNKAEFRSFDHSIKR HKGLNAETKVVLYAPTFRDYKMNNFFGEAIPDMAKLLKTLKKNNILLIIKLHYLVKNDVN FTTAKKMYENHPNILFWDNKKDIYEIFDQIDLGILDYSSIYYDMLSSGVKKFIRYIYDYD KYMENRTLVYDYKEKTSGVIVSSFDELLKALDQIDAIEINEKKSKEIINEFWQYDQDDKN GFEKIIDTTLKFSIKRKQLPKLYSFDIFDTLIQRKTLRPDGIFYYVKDKLLRISTDIPIY VIQNYPRIRIQAENYVRDYYKKSEFIRDEKRIEIRFIDIINRIKNIHELTDDQAQLLYNL EIEAEIANVEAKKDKIKVLHNLLDSYQDVILISDMYLPKEVILEMLYQVDPRLTELPLYL SSDIGNQKSTSTLYLDVFEDLKYNYSEWIHYGDNKHADFNVPKKLNIKPIHHTITKFNGY ENKILNKNKNYDTFLLTTQMTRFRENDKSRLNYYVYSYISSYFIPYVSWSIKKAIKENIK TLYFISRDGELLKKIADEIISVKGYNIKTKYIYGSRKAWRIPSFINEVDKEFFSPFGNFT GLTNFDSTLRALHISEQEFDEIFPQLKHIKGCSEFTKSTKELIRVSAQNNNKYKNLLLKK AHEERKIVNDYLIQEIDFYEKFAFVEYWGRGYTQDCLDRLLNNISDQTINTIFFYARSIY PTVGTSIRYNYTSKMTSLIFIESIFANMPYQSIPGYRRNNNIVEPVINFKNYNKQLYDAM DKILPLFIQEFFNNKYIDEDEVERNFYDFGVEYFKNNPEDDFIVEFFAPLKDSVILYEPE IEYAPAISYKMASQKLLGKKVPLKTKNKRMSLKRSPIGVQKAYQFHIKYLKNRKSKIIRP FLNNRVIKTIMKLKTVLK >gi|224999873|gb|ACJC01000127.1| GENE 9 8402 - 8896 354 164 aa, chain + ## HITS:1 COG:SA0213 KEGG:ns NR:ns ## COG: SA0213 COG1755 # Protein_GI_number: 15925924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 164 1 164 164 221 82.0 4e-58 MILTILFIFFCIRLISLKISMQHAKQLKVEGAVEYGVKNSKYLAITHVFIYMSAAIETFI HKDTFSLLNGIGLIILIVAYIMLFIVIKTLGRIWTLKLFILPNHPIIKSGLYKVTKHPNY FLNIIPELIGVLLLTHATYTTLLLVPYAYFLIARIRQEENLMNI >gi|224999873|gb|ACJC01000127.1| GENE 10 9809 - 11293 1921 494 aa, chain - ## HITS:1 COG:SA2400 KEGG:ns NR:ns ## COG: SA2400 COG0579 # Protein_GI_number: 15928193 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Staphylococcus aureus N315 # 1 492 1 493 498 700 66.0 0 MSEANHKNIVVVGAGIIGTSVATMLSKVSPNWHIDMFERLEGAGIESSNENNNAGTGHAA LCELNYTVEQDDGSIDASKAQEINEQFELSRQFWGNLVKNGDISNPEEFIQPLPHISFVM GPTNVNFLRKRYETLRTLPMFDTIEYTEDMETMRKWMPLMMENREPGHQMAASKIDEGTD VNYGALTRKLAHYLEQKSNVSLKYNHDVVDLTQREDGKWEVVVENRETKEKITKIADKVF IGAGGHSIPLLQKSGVKQREHLGGFPISGQFLRCTNPDIIKQHAAKVYSKEPQGKPPMTV PHLDTRYINGKQTLLFGPYANIGPKFLKFGSNLDLFESIKPYNITTMLASAVKNVPLIKY SIDQMIKTKEGCMNYLRTFIPDAKDEDWELYTAGKRVQVIKDSEQHGKGFVVFGTEVVNS DDNSMIALLGESPGASTSLSVVLEVLEKNFADDKEAWEPVVKEMVPTYGRSLINDEKLMR ETRRETSKNLHLNR >gi|224999873|gb|ACJC01000127.1| GENE 11 11493 - 12473 226 326 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae 3655] # 15 317 40 341 353 91 27 6e-18 MKENFWSTLPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESYCHPEGIHSVR GRLTFSDDEQPMVAHIWGDKPEQFREMSIGLAEMGFKGIDLNMGCPVANVAKKGKGSGLI LRPETAAEIIQASKAGGLPVSVKTRLGYYDIDEWRDWLKHVFEQDIANLSIHLRTRKEMS KVDAHWELIEAIKTLRDEIAPNTLLTINGDIPDRQTGLELANKYGIDGIMIGRGIFHNPF AFEKEPREHSSKELLGLLRLHLSLFEKYDKDEARHFKSLRRFFKIYVRGIRGASELRHQL MNTQSIAEARELLDTFEARMDARSEV >gi|224999873|gb|ACJC01000127.1| GENE 12 13059 - 13445 316 128 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01899 NR:ns ## KEGG: SLGD_01899 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 8 127 1 118 121 71 36.0 9e-12 MEIGNNEMKEFKVIIVILSLIPFEFLGIFTDYQTGLLLGYFPFVIISMLISFSIFKSGVK GNISVVLARLVGILVSWICVHLFMDVDKTSGYFKPFTTDVFSIILAGIHIIVITLICLVM YSFSYRNK >gi|224999873|gb|ACJC01000127.1| GENE 13 14179 - 15036 941 285 aa, chain - ## HITS:1 COG:no KEGG:SERP2417 NR:ns ## KEGG: SERP2417 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 285 1 285 285 451 99.0 1e-125 MKKILVLSLTAFLVLAGCNSGDKTDTKDKKEETKQTSKANKENKEQHHKQENDNKASTQL SEKERLALAFYADGVEKYMLTKNEVLTGVYDYQKGNETEKKQMEQLMLEKADSMKNAPKD MKFYQVYPSKGQFASIVGVNKNKIFIGSTQGALIDYQTLLNNGKELDISQLYEDNKDNRS LEEMKNKIGIVDSGAAQKADDPDKNSANTMAHMRSQIYEKISDFDGKLDNKTYLWDNIRI NDDGNWTVHYRNHDGEIMGTYKSEKNKIIKLDQNGNKIKEQQMSN >gi|224999873|gb|ACJC01000127.1| GENE 14 15335 - 16084 889 249 aa, chain + ## HITS:1 COG:no KEGG:SSP0056 NR:ns ## KEGG: SSP0056 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 249 1 249 249 357 69.0 2e-97 MATVTQRVKQVKQPRGGYFNRKAFVMTQLEPSEFIDTTNENVPPQTVGLVVDYLTRMIVN QDAEKAFAISLMGAELYGDLQHAQSLLAEIKGNDDVSIIKACQLVNYDMVYRIGGTPKPP VIPDKDTVKHIQLLVDRSLAFFNETSEITADGFTFEGGYTNMINAGDGDFLTTDTLWDFK VSKQLPQKNQTLQLAIYYLMGKASQQSIFKNIRYIGIFNPRLNRIYTYDMTQADSDILEI IRKEVIGYD >gi|224999873|gb|ACJC01000127.1| GENE 15 16435 - 16770 243 111 aa, chain + ## HITS:1 COG:no KEGG:SAV2477 NR:ns ## KEGG: SAV2477 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 109 57 167 170 154 75.0 7e-37 MKYDEKAKQKEIYYKEQQERITLYLKYNTKKPNTIKSVHFTSLKQGPMGDAVIEGYINNN KEDDFVAYASPEDNFQFQGDMIESKKVSNLIKYQTKSPDNIKKDLDKKKEH >gi|224999873|gb|ACJC01000127.1| GENE 16 17018 - 17203 165 61 aa, chain - ## HITS:1 COG:no KEGG:SE0151 NR:ns ## KEGG: SE0151 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 61 1 61 61 94 100.0 9e-19 MNHFGKLHRISLILNIMFLILMPKIYSFDNIYLSIIWTLLGIANAVYLLIKQRQENTIKR K >gi|224999873|gb|ACJC01000127.1| GENE 17 17517 - 18428 1277 303 aa, chain - ## HITS:1 COG:no KEGG:SE0149 NR:ns ## KEGG: SE0149 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 303 1 300 300 418 89.0 1e-115 MKKHVLAIGAITVTTLLEGCDFGDLVGQHQTEKQSENSNTQTEQASNNKNSNSNNGHSSN NNESRDRVEDLTQSQKVALAINDPSVSQYAVNASELRNHSFYANYNGGGERKSIHTYQLE ALPTKVEGAPSDMKFYTAKPSKGSFVTLIGIGNEKVLIAGTQSSGTYQQYAHSEAARELD LHELLNKYGKSSNYKDIANQIAFTQSQSSNSSESNTSDEGTSNSDSDTSNDDKVTRSNVI DKVEAYEGHPLDTDTYTFKEPEQNEDGDWGFSILDKEGNLEGSYIVTSDGEVTKYDENGE EIE >gi|224999873|gb|ACJC01000127.1| GENE 18 18923 - 19456 551 177 aa, chain + ## HITS:1 COG:lin1847 KEGG:ns NR:ns ## COG: lin1847 COG3153 # Protein_GI_number: 16800914 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Listeria innocua # 5 176 3 170 172 135 40.0 3e-32 MNLKIRKEKREDYSFTERLIKEAFAHETYSDHNEHKLVAKLRQSDTFVPDLSLIALDKNK IIGQILLSKISIVSGKNSTGSLALAPVSVLSAYQNKGVGRQLIQKALETAKNLNFESVIV LGHSDYYPKFGFKKASNWNIEAPFDVPKDTLMAMELKEHALDNVSGVIHYPNAFFES >gi|224999873|gb|ACJC01000127.1| GENE 19 19699 - 20667 871 322 aa, chain - ## HITS:1 COG:SA0349 KEGG:ns NR:ns ## COG: SA0349 COG0668 # Protein_GI_number: 15926062 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Staphylococcus aureus N315 # 28 319 1 291 293 253 48.0 3e-67 MTYCSLSIKIYTLKILIVLTIGGHVVIMSQFKDTLYKLFEPMMKIEFYQNLLVNLLIILA YILMGVIVIAISRKLVTKFFNVNEKKKNRHKIKRSETLSTLIQNLISYVVWFIVLTSILS RFGISVSAILAGAGVVGVAVGFGAQTIVKDIITGFFIIFEGQFDVSDYVQINASGVTIAE GTVKTIGLRSTRIQSDTGEIYTLPNGMISEIVNYSATDVSPIVMIPISPNENYKVIEEKL LTFLPTLKNKYDIFVSAPDLLGLDSVDGNEMVIKLLAHVKPGMHFPGQRLLRKEVIQYFS EEGIHIPKPTLVKLDKELNKKE >gi|224999873|gb|ACJC01000127.1| GENE 20 20939 - 21724 592 261 aa, chain - ## HITS:1 COG:no KEGG:SERP2422 NR:ns ## KEGG: SERP2422 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 261 1 261 261 435 93.0 1e-121 MRYLKKVTIYISLLILTIFIGGCGFINKEDSKETEIKQNFNKMLNVYPTKNLEDFYDKEG FRDEEFDKGDKGTWIIRSEMTKQPKGKIMTSRGMVLYINRNTRTAKGYFLIDEIKDDSNG RPIENEKKYPVKMENNKIIPTKPISDDKLKKEIENFKFFVQYGNFKNLKDYKDGEISYNP NVPSYSAQYQLNNNDNNVKQLRKRYNIPTNQAPKLLLKGDGDLKGSSVGHRDLEFTFVEN KKENIFFTDSINFKPTERDES >gi|224999873|gb|ACJC01000127.1| GENE 21 22062 - 22847 676 261 aa, chain - ## HITS:1 COG:no KEGG:SE0142 NR:ns ## KEGG: SE0142 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 261 1 261 261 435 93.0 1e-121 MKHSSKIIIFVSFLILTIFIGGCGFINKEDSKETEIKQNFNKMLNVYPTKKLEDFYDKEG YRDEEFDKDDKGTWIVHSEMVIEPKGKNMESRGIILRINRNTRTTKGYFLISEITEDKNG FAHNKDKKYPVVMKHNKIIPTKPIQDDKLKKEIENFKFFVQYGNFKNLKDYKDGEISYNP NVPSYSAKYQLSNNDYNVKQLRKRYDIPTKKAPKLLLKGDGDLKGSSVGRKDLEFTFVEN NEENIYFTDSINFKPTERDES >gi|224999873|gb|ACJC01000127.1| GENE 22 23244 - 24128 842 294 aa, chain - ## HITS:1 COG:MTH894 KEGG:ns NR:ns ## COG: MTH894 COG0701 # Protein_GI_number: 15678914 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Methanothermobacter thermautotrophicus # 9 294 31 327 327 143 30.0 4e-34 MLDSSIEFINTFLMLFFELLVLFIVVSFIVSIIQQIVSEEKIKHFLSKPNQVINYILGMI FGSITPFCSCSTIPILAGLLNSKVPFGPAVSFLIASPLMNPLMIFMLWSLLSWKVAVIYF VVLAIFSILTGLVFSKMNLAKTYKGVNVKGDGFFANKTGSRVKHALNDAWAFLYPMLPYL FIGVFIGAFIYGFVPETFITKYASGDSSISVIIASVVGIPMYIRPETMLPIAGALASKGM SLGTVVSLIIGGAGASIPEVVLLSKLFKKEFVVSFVIAILVVAISTGLIVNIII >gi|224999873|gb|ACJC01000127.1| GENE 23 24216 - 24536 304 106 aa, chain - ## HITS:1 COG:BS_yqcJ KEGG:ns NR:ns ## COG: BS_yqcJ COG0640 # Protein_GI_number: 16079634 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 9 103 2 94 105 80 43.0 9e-16 MEVIKTKTDMSEDQQFDFYEKMFNALADKIRLKILNQISQSSNKSLCVCDLEGLLDIKQS KLSYHLKKLVDANVLIAEKHGTWNYYKINEQQIQVVLNEDTCCKIL >gi|224999873|gb|ACJC01000127.1| GENE 24 25060 - 25407 507 115 aa, chain + ## HITS:1 COG:no KEGG:SERP2427 NR:ns ## KEGG: SERP2427 # Name: arsD # Def: arsenical resistance operon trans-acting repressor # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 105 1 105 115 179 99.0 4e-44 MLNIEIYEEAMCCSTGVCGPEPDETLIKANQINEYLKQNQIEVQRYNMNNNPNEFIQNKE VIRLIQEKGDEVLPITFIEGNIAKTGAYITQEEADEIITVNQMRNGGCCGGDGCC >gi|224999873|gb|ACJC01000127.1| GENE 25 25373 - 27118 1770 581 aa, chain + ## HITS:1 COG:pli0037 KEGG:ns NR:ns ## COG: pli0037 COG0003 # Protein_GI_number: 18450319 # Func_class: P Inorganic ion transport and metabolism # Function: Oxyanion-translocating ATPase # Organism: Listeria innocua # 20 580 7 569 580 486 45.0 1e-137 MEDAVVEMDAVKYLNKLNLDNVELTKYLFFTGKGGVGKTTISSFIALNLAENGKKVALVS TDPASNLQDVFQMELSNKLTKYQPIPNLSIANFDPIAAADDYKAQSIEPYEGILPEDVLA EMKEQLSGSCTVEVAAFNEFTNFLSDKTLEQEFDFIIFDTAPTGHTLRMLELPSAWTDYL NTTSNDASCLGQLSGLNENRVKYNSALEKLRNQDDTTMMLVARPSHSSIYEIQRAQQELQ QLSISKFKVIINNYIEESHGLISSQMKSEQDKNINHFTEWLNNNHAYYVPYKKQKEEGIE SLTNLLNDDNLIENDDFIVEDHPQFNKLIDEIENSKVQYLFTMGKGGVGKTTVATQLATA LSNKGYRVLLATTDPTKEINVETTSNLNTAYIDEEQALEKYKKEVLATVNDDTPQDDIDY IMEDLKSPCTEEIAFFKAFSDIMENQDDMDYVIVDTAPTGHTLLLLDSSENHHRELKKKS TQTTSNVETLLPKIQNKNLTQMIIVTLAEKTPYLESKRLVEDLNRANIGHNWWVVNQSLV TLNQRDDLFSNKKEDESFWINKIKNESLDNYFVIPYRVLEY >gi|224999873|gb|ACJC01000127.1| GENE 26 27304 - 27582 139 92 aa, chain + ## HITS:1 COG:SAP016 KEGG:ns NR:ns ## COG: SAP016 COG0640 # Protein_GI_number: 16119216 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 92 13 104 104 122 66.0 1e-28 MADSSRLEILDLLSCGELCACDLLQHFSFSQPTLSHHMKVLKDNNLITSRKDGNKNLYKL NHAVLDDITSRLTLLSSSTVPCICETVEKGEC >gi|224999873|gb|ACJC01000127.1| GENE 27 27585 - 28874 1413 429 aa, chain + ## HITS:1 COG:SAP017 KEGG:ns NR:ns ## COG: SAP017 COG1055 # Protein_GI_number: 16119217 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Staphylococcus aureus N315 # 1 429 1 429 429 593 90.0 1e-169 MTILAITIFILTLIFVIWQPKGLDIGITALIGAVVAIITGVVSFSDVLEVTGIVWNATLT FVAVILISLILDEIGFFEWSAIHMVRASKGNGLKMFVYIMLLGAIVAAFFANDGAALILT PIVLAMVRSLGFDKKAVFPFIIASGFIADTTSLPLIVSNLVNIVSADYFDIGFVEYFSKM IIPNIFSLVASILVLWLYFRKSIPRKFDAVNIRDPKEAIKDKKLFNISWIVLTVLLVGYL ISEFINIPVSIIAGIIALIFVLLARKSKAVHTKQVIKGAPWNIVLFSIGMYLVVFGLKNV GITTLLSDVLTNISSYGLFSSIMGMGFISAFLSSIMNNMPTVLIDAIAIGQSQTTSILKE GMIYANVIGSDLGPKITPIGSLATLLWLHVLTQKGVKISWGQYFKIGIIITIPVLFITLL GLYLTLIIF >gi|224999873|gb|ACJC01000127.1| GENE 28 28891 - 29286 381 131 aa, chain + ## HITS:1 COG:SAP018 KEGG:ns NR:ns ## COG: SAP018 COG0394 # Protein_GI_number: 16119218 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 225 83.0 1e-59 MTKKIIYFICTGNSCRSQMAEGWGKNILDDEWQVYSGGIEAHGVNPKAIEAMKEVGIDIS NHTSNLIDKNILNQSDLVVTLCSDADQNCPVLPSNVKKEHWGFDDPAGKPWSEFQRVRDE IKAAIESFKAR >gi|224999873|gb|ACJC01000127.1| GENE 29 29347 - 30087 646 246 aa, chain - ## HITS:1 COG:SA0080 KEGG:ns NR:ns ## COG: SA0080 COG0730 # Protein_GI_number: 15925788 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 1 246 6 251 251 234 72.0 2e-61 MIIMLLIGIFGGFISGLVGIGGAIIIYPMLLLLPPLVGLPTYSAYIASGLTSSQVFFSTL SGSFKAYKNKDFSRTLVLNMGSGMIIGSILGAILANLINVQFVNMVYIIIALLALILMFI KVAPSTSHIKFNRLLLITIGGIIGLVSGIVGAGGAFIIIPVLLVIFKLPMNTVVTNSIVI AFISSVGAFIIKLLQGYIPVNSAIPLILGSILFTPLGMKIGQKIPDYIQKMIVSILIVIA IIKLIF >gi|224999873|gb|ACJC01000127.1| GENE 30 30102 - 30344 259 80 aa, chain - ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 80 7 86 86 97 82.0 4e-21 MINRIHRIQGQLNGVIKMMEEEKNCKDVISQLSASKSSIQRLMGIIISENLVECVKMSEE NSEDSQALINEAVELLIKSK >gi|224999873|gb|ACJC01000127.1| GENE 31 30501 - 31571 1238 356 aa, chain + ## HITS:1 COG:SA0044_3 KEGG:ns NR:ns ## COG: SA0044_3 COG2210 # Protein_GI_number: 15925751 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 204 356 1 153 153 259 82.0 7e-69 MSQYKTKHINDFTKKELQELGSNGQLIDVRQPEEYQLGHIKNALLHSVENIENFKQDRNK TYYIYCKSGNRSRKASQFLTQRGYNVVNLDGGYMAYEQQHNNESFKLKEDKEIQIKDNRK TFNYSNLQCPGPIVNISKEMKNIAIGDQIEVVVTDHGFLNDIKSWVKQTGHTLVRLNDSG NEIRAIIQKEENKNIEVTHTKNGTTIVLFSGELDKAVAAMIIANGAKAAGRDVTIFCTFW GLNALKKNQSQRIKKKGIAKLFDFMLPNSPIKMPISKMNMFGVGNLMMRYVMKKKNVDDL PSLINQAVEQGVKLIACTMSMDVMGITKEELRDDVEYGGVGAYIGYTEQANHNLFI >gi|224999873|gb|ACJC01000127.1| GENE 32 31590 - 32918 1416 442 aa, chain + ## HITS:1 COG:SA0083_1 KEGG:ns NR:ns ## COG: SA0083_1 COG0491 # Protein_GI_number: 15925791 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Staphylococcus aureus N315 # 1 266 1 266 266 443 77.0 1e-124 MFFKQFYDKHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHAD FASGIRDVAIKLNASIYVSGESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHT PESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKQMFKSIE SIKDLPDYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAFSENNEATFIDKLISDQP APPHHFAQMKKINQFGMNLYQPYTVYPATSTNRLTFDLRSKEAYHGGHIEGTINIPYDKN FINQIGWYLNYDQEINLIGDYHLVSKATHTLQLIGYDDVAGYQLPQSKIQTRSIHSEDIT GNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPFNKNDVIYVHCQSGIRSSIAIGI LEHKGYHNIINVKEGYKDIHLS >gi|224999873|gb|ACJC01000127.1| GENE 33 33391 - 33936 555 181 aa, chain - ## HITS:1 COG:no KEGG:USA300HOU_0085 NR:ns ## KEGG: USA300HOU_0085 # Name: not_defined # Def: lipoprotein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 181 1 181 181 298 97.0 6e-80 MIKKLFFMILGSLLILSACSNNDEKDKDTSDQKSESHMKHNDESKVPENMKSINEGEFKA GDKVTITAGHMPGMKGAEATVKGAYKTYAYVVSYKPTNGNEKVNNHKWVVNEEIKDAPKD GFSKGDTVKLEASHMSGMKGTTANIDNVKKTTVYVVDYKSKDNGKIIKNHKWMTGNELKA R >gi|224999873|gb|ACJC01000127.1| GENE 34 33954 - 35957 2090 667 aa, chain - ## HITS:1 COG:MA0166 KEGG:ns NR:ns ## COG: MA0166 COG2217 # Protein_GI_number: 20089064 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Methanosarcina acetivorans str.C2A # 3 666 86 763 764 570 44.0 1e-162 MHHDNHASHHHSGHAHHHGNFKVKFFVSLIFAIPIILLSPLMGVNLPFQFTFPGSEWVVL ILSTILFFYGGKPFLSGGKDEIATKKPGMMTLVALGISVAYIYSLYAFYMNNFSSATGHT MDFFWELATLILIMLLGHWIEMNAVGNAGDALKKMVELLPNSAIKVMDNGQREEVKISDI MTDDIVEVKAGESIPTDGIIVQGQTSIDESLVTGESKKVQKNQNDNVIGGSINGSGTIQV KVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLFYFAVSVGVISFIVWMLIQND VDFALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGLIIKNRESVEIAQHIDYVMMD KTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNHPLAISIVDFAKSKNVSFTNP QDVNNIPGVGLEGLIDNKTYKITNVSYLDKHKLNYDNDLFIKLAQQGNSISYLIEDQQVI GMIAQGDQIKESSKQMVADLLSRNITPVMLTGDNNEVAHAVAKELGISDVHAQLMPEDKE SIIKDYQSDGNKVMMVGDGINDAPSLIRADIGIAIGAGTDVAVESADIILVKSNPSDIIH FFTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGVLAFIGLILSPAIGAILMSLSTIIVAIN AFTLKLK Prediction of potential genes in microbial genomes Time: Sun May 29 07:54:29 2011 Seq name: gi|224999872|gb|ACJC01000128.1| Staphylococcus epidermidis W23144 contig00169, whole genome shotgun sequence Length of sequence - 4612 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 4, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 25 - 510 597 ## SERP2439 hypothetical protein - Prom 588 - 647 8.2 + Prom 613 - 672 11.5 2 2 Tu 1 . + CDS 777 - 992 112 ## gi|242243169|ref|ZP_04797614.1| hypothetical protein HMPREF0791_1695 + Term 997 - 1034 3.2 - Term 985 - 1022 3.2 3 3 Tu 1 . - CDS 1055 - 2416 1373 ## COG0477 Permeases of the major facilitator superfamily - Prom 2506 - 2565 5.4 4 4 Op 1 . - CDS 2733 - 3494 639 ## SERP2443 putative lipoprotein 5 4 Op 2 . - CDS 3569 - 3742 83 ## SERP2448 hypothetical protein 6 4 Op 3 . - CDS 3815 - 4465 641 ## SERP2445 putative lipoprotein - Prom 4514 - 4573 8.2 Predicted protein(s) >gi|224999872|gb|ACJC01000128.1| GENE 1 25 - 510 597 161 aa, chain - ## HITS:1 COG:no KEGG:SERP2439 NR:ns ## KEGG: SERP2439 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 15 161 1 147 147 248 97.0 5e-65 MKKVSKFILASSLILGFSVTPELFNVTQAHAQESVKPYYNYSGYTAHQSNFILDKNFKTS LKADNFKINGYKITQNESAKNDKDVYDQTYYGVSNHKANGVFFSLDGKSVSEKELLNHYG EPKSTSTSAWGKEYSYKIGNKDVRFYVNKKGYVIKGQIISE >gi|224999872|gb|ACJC01000128.1| GENE 2 777 - 992 112 71 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243169|ref|ZP_04797614.1| ## NR: gi|242243169|ref|ZP_04797614.1| hypothetical protein HMPREF0791_1695 [Staphylococcus epidermidis W23144] # 1 71 1 71 71 112 100.0 1e-23 MNQYNQICAQLFEVTIFLSFIKGLIRHFTANENEEIIDKIFQSLINDGEISTTLITNTSF LCLMHISNNFL >gi|224999872|gb|ACJC01000128.1| GENE 3 1055 - 2416 1373 453 aa, chain - ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 19 448 13 444 451 442 53.0 1e-124 MNDTNRTHKENKLEQDITLPYLKKAVIFSITFGFFGVNMAFALQSAMMGRIFQTLGANPN NLGWFFILPPLVGMIVQPLIGYYSDRTWTRFGRRMPYLLIAGPIGAIVLVLLPNAGSFNF GYASLMALSFGAVMTLLMDLTSNACMQPYKMIIGDMVNEKQRDMAWSWQQIFSNLGGIIA TVLPFLLTMLGMSNVAPKGEVPMTVKLAYYIAAAVLLIASIWTVISVREYEPKTYNYYHG INENNRNNKLSLLQLLKKAPKQFWQISVVQFFNWFALMYLWTYSTGAIAKNVWNVTDPSS AGYQAAGNWYGVLYCIQFLSSVIFGFVIARSKPSQRKFWYSFGLLFGGIGLISIFFIHNQ WLLIFSFILIGINNLTMNTQPFTLLTEAIDGENSGAYLGLFNTSICLPQIVASIVSFGLY PLLGSSMPAMLLLAGIMMLLGAVSVKFINAKFE >gi|224999872|gb|ACJC01000128.1| GENE 4 2733 - 3494 639 253 aa, chain - ## HITS:1 COG:no KEGG:SERP2443 NR:ns ## KEGG: SERP2443 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 253 1 253 253 436 96.0 1e-121 MRFLKKVTIYISLLILVSGCGNGKETEIKQNFNKMLKMYPTKNLEDFYDKEGYRDEEFDK KDKGTWIVGSTMTIEPKGKYMESRGMFLYINRNTRTTKGFYYVRKTTDDSKGRSKADEKR YPVKMEHNKIIPTKPIPNDKLKKEIENFKFFVQYGDFKNLKDYKDGDISYNPNVPSYSAK YQLSNNDYNVKQLRKRYDIPTNQAPKLLLKGHGDLKGSSVGSKSLEFTFVENKEKNIFFS DGVQFTPSEDSES >gi|224999872|gb|ACJC01000128.1| GENE 5 3569 - 3742 83 57 aa, chain - ## HITS:1 COG:no KEGG:SERP2448 NR:ns ## KEGG: SERP2448 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 5 57 40 92 92 68 75.0 8e-11 MRIINEMKAEEKTLITLKKRHCHAFSKNFKSLAKDDWVVSTIFELDSMSNNLKNNMD >gi|224999872|gb|ACJC01000128.1| GENE 6 3815 - 4465 641 216 aa, chain - ## HITS:1 COG:no KEGG:SERP2445 NR:ns ## KEGG: SERP2445 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 216 46 261 261 362 96.0 7e-99 MYPTKNLEDFYDKEGFRDEEFDKDDKGTWIVHSKMVIEPKGKNMESRGMVLFINRNTRTS KGHFIVNEIEKDREGRPINNKKKYPVKMKNNKIIPTKPISNDKLKKEIENFKFFVQYGNF KDIKNYKDGDISYNPNVPSYSAQYQLSNNEYNVQQLRKRYDIPTKKAPKLLLKGDGDLKG SSVGSKNLEFTFIENKEENIYFTDSVLFSPSEDNES Prediction of potential genes in microbial genomes Time: Sun May 29 07:54:47 2011 Seq name: gi|224999871|gb|ACJC01000129.1| Staphylococcus epidermidis W23144 contig00170, whole genome shotgun sequence Length of sequence - 10335 bp Number of predicted genes - 19, with homology - 18 Number of transcription units - 9, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 137 - 186 10.6 1 1 Op 1 . - CDS 203 - 448 188 ## SERP2446 PenN domain-containing protein 2 1 Op 2 . - CDS 563 - 1051 408 ## SERP2447 putative lipoprotein 3 1 Op 3 . - CDS 1121 - 1342 115 ## SERP2465 putative lipoprotein - Prom 1459 - 1518 9.1 - Term 1482 - 1531 9.9 4 2 Tu 1 . - CDS 1730 - 2512 851 ## SERP2465 putative lipoprotein - Prom 2597 - 2656 7.5 - Term 2678 - 2707 -0.2 5 3 Op 1 2/0.000 - CDS 2717 - 3499 500 ## COG3464 Transposase and inactivated derivatives 6 3 Op 2 . - CDS 3496 - 4032 421 ## COG3464 Transposase and inactivated derivatives - Prom 4068 - 4127 7.9 - Term 4098 - 4157 14.7 7 4 Op 1 . - CDS 4194 - 4631 316 ## SAR1894 hypothetical protein 8 4 Op 2 . - CDS 4666 - 5103 325 ## SAR1894 hypothetical protein - Prom 5150 - 5209 5.4 9 5 Tu 1 . - CDS 5228 - 5440 218 ## gi|242243182|ref|ZP_04797627.1| conserved hypothetical protein - Prom 5516 - 5575 4.4 10 6 Op 1 . - CDS 5655 - 5837 107 ## 11 6 Op 2 . - CDS 5847 - 6053 143 ## gi|242243183|ref|ZP_04797628.1| hypothetical protein HMPREF0791_1709 12 6 Op 3 . - CDS 6028 - 6258 225 ## gi|242243184|ref|ZP_04797629.1| hypothetical protein HMPREF0791_1710 13 6 Op 4 . - CDS 6279 - 6569 351 ## SAR0289 hypothetical protein - Prom 6599 - 6658 7.6 14 7 Op 1 . - CDS 6735 - 7412 593 ## SAOUHSC_00270 hypothetical protein 15 7 Op 2 . - CDS 7426 - 7704 152 ## SAAV_2550 hypothetical protein - Prom 7793 - 7852 5.8 16 8 Op 1 . - CDS 7904 - 8362 558 ## SAS0075 hypothetical protein 17 8 Op 2 . - CDS 8364 - 9131 677 ## SERP2423 putative lipoprotein - Prom 9237 - 9296 6.6 18 9 Op 1 . - CDS 9318 - 9542 278 ## SLGD_00045 hypothetical protein 19 9 Op 2 . - CDS 9545 - 10249 705 ## SERP2453 putative lipoprotein - Prom 10272 - 10331 4.4 Predicted protein(s) >gi|224999871|gb|ACJC01000129.1| GENE 1 203 - 448 188 81 aa, chain - ## HITS:1 COG:no KEGG:SERP2446 NR:ns ## KEGG: SERP2446 # Name: not_defined # Def: PenN domain-containing protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 81 35 115 115 150 98.0 2e-35 MLNNLSLISNCIGTWKDLEYAISDYDQNEFIESFDISYSINTSGRLGKAIMLYHSKVVNK CHYYGIERLPLEMITKNHKTT >gi|224999871|gb|ACJC01000129.1| GENE 2 563 - 1051 408 162 aa, chain - ## HITS:1 COG:no KEGG:SERP2447 NR:ns ## KEGG: SERP2447 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 162 90 251 253 268 99.0 5e-71 MNRNTRSTTGYYVIRKISEDNKSEIDDEEKKYPIKMVNNKIIPTQKINDNKLKNEIENFK FFVQYGSFKNSDDYKEGDIEYNPNAPNYSAQYHLSNDDYNIKQLRKRYDIKTKKTPRLLM RGAGDPKGSSVGYKNLEFTFVENNEENIYFTDSINFNPSKGK >gi|224999871|gb|ACJC01000129.1| GENE 3 1121 - 1342 115 73 aa, chain - ## HITS:1 COG:no KEGG:SERP2465 NR:ns ## KEGG: SERP2465 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 73 1 73 259 126 94.0 2e-28 MKHSKKLLLCISFLLITFFIGGCGFTNKDDSKEMEIKKSFNKTLSMYPIKNLEDLYDKEG FRDEEFDKDDKGT >gi|224999871|gb|ACJC01000129.1| GENE 4 1730 - 2512 851 260 aa, chain - ## HITS:1 COG:no KEGG:SERP2465 NR:ns ## KEGG: SERP2465 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 257 1 257 259 341 73.0 2e-92 MKHSRRLIVFASFLILMIFIVGCGSMTKEDKKEEKIKKSFEKTLGMYPIKNLEELYDKEG YRDEEFDKDDKGTWTLYSEMAIQRKGNDLETRGMKLDIDRNTRTSKGEYIISKVTYDKKG RPHHHDKKYPIKMKDNKIIQIEKSIDNRLKSEIENFKFFAQYANFKDLNDYKNGDISYNP NVPSYSAEYDLENNNYNVKQLRKRYDIPTKQAPKLLLKGTGDLKESSVGYKDLEITFVEK SGENIYFSDLMNFNPSEGKE >gi|224999871|gb|ACJC01000129.1| GENE 5 2717 - 3499 500 260 aa, chain - ## HITS:1 COG:SA0369 KEGG:ns NR:ns ## COG: SA0369 COG3464 # Protein_GI_number: 15926085 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 255 178 432 439 186 42.0 3e-47 MSFIYADAVSHRIVDVVADRKLKSLKDLFYRYFLKLRQKVKTVTIDMYEPYMSLIKQLFP NAKIIIDRFHIVQSLNRVLNMSRVHVMNCYRTSNRLLYNKYKSYWKLFLKPFETLEAFNY HKVHLFKEWKTEKDIINYLLGVDVELFNTYHYVHKVRRLLKENQIEKFNHKLFSIHLSDV CPKLRPVIRTLRRLAAFIEKTMTYSNLTNGPLEGINNKIKLIKRVSFGYRNYDNLRNRII ITLRLFASTTKKELKQPKVA >gi|224999871|gb|ACJC01000129.1| GENE 6 3496 - 4032 421 178 aa, chain - ## HITS:1 COG:SA0369 KEGG:ns NR:ns ## COG: SA0369 COG3464 # Protein_GI_number: 15926085 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 173 1 172 439 130 43.0 1e-30 MCKSILNTLRIKDKNLNFSDEVIEKKHKGRMSLFYYAELTYQPTHCENCSTKNENFSIVK NGKKTSTITLLKIMEMPAYLELQKQRFYCKSCDSHFTAKSNIVDAHCFISNKTKLAVLDK AQEYRSQKSIAKSCLVSSMTVSRVINQAASDVGQSSFDALPEHLMMDEFKSVKMLSEK >gi|224999871|gb|ACJC01000129.1| GENE 7 4194 - 4631 316 145 aa, chain - ## HITS:1 COG:no KEGG:SAR1894 NR:ns ## KEGG: SAR1894 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 26 143 24 143 149 82 38.0 3e-15 MFNNNKIILFALSFFIILTLITGGFYILHENKRDYYLDIQKKRIDLFFNENVNHYKHFTI VKTEKNPMGDYLIKGYVNNNKKLYFTATMNETSDYQFDNQMSMSENLSNMFKTQNDLDKF PSQIIKEKNLNEKDYEADPPLIWGF >gi|224999871|gb|ACJC01000129.1| GENE 8 4666 - 5103 325 145 aa, chain - ## HITS:1 COG:no KEGG:SAR1894 NR:ns ## KEGG: SAR1894 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 26 143 24 143 149 97 45.0 1e-19 MFNNNKIILFALSFFIILTLIIGGFYILHENKRDYYLDIQKKRIDLFFEENLDNYKTLKI TETGKTPLGNYTIKGYINNNKKLDFLATLSSDSNYQFEDTISYPQEVGNMYKPPRSHKKF PSQIIKDKNLNENEYTADPPLIWGF >gi|224999871|gb|ACJC01000129.1| GENE 9 5228 - 5440 218 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243182|ref|ZP_04797627.1| ## NR: gi|242243182|ref|ZP_04797627.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 70 45 114 114 99 100.0 6e-20 MPVKAPPQLRSEFMEGNPMVWVLFFLIFVIYILIDIVLWIKRKKFAFIAIRPLFVIVWLI LLQILLAVNK >gi|224999871|gb|ACJC01000129.1| GENE 10 5655 - 5837 107 60 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEYLLLVIVLGLYYVVYITSVMYAGGVKLLQLFVYLAVAILYLIPFFLLVMTIIVCKIIY >gi|224999871|gb|ACJC01000129.1| GENE 11 5847 - 6053 143 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243183|ref|ZP_04797628.1| ## NR: gi|242243183|ref|ZP_04797628.1| hypothetical protein HMPREF0791_1709 [Staphylococcus epidermidis W23144] # 1 68 1 68 68 115 100.0 7e-25 MRTYLCIDEMLHGRMIGEDYEKQEKKVLTEIERFSKENNLKRISPYYHIINEVEGLKWID IKVKVLEL >gi|224999871|gb|ACJC01000129.1| GENE 12 6028 - 6258 225 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243184|ref|ZP_04797629.1| ## NR: gi|242243184|ref|ZP_04797629.1| hypothetical protein HMPREF0791_1710 [Staphylococcus epidermidis W23144] # 1 76 9 84 84 123 100.0 3e-27 MMFRNLIYKEYVDFNIYELDTCAKDFYKLISEQNLKKNGPLIMAYTQIMKENMVNIELML PVNKPLTSNENLFVYR >gi|224999871|gb|ACJC01000129.1| GENE 13 6279 - 6569 351 96 aa, chain - ## HITS:1 COG:no KEGG:SAR0289 NR:ns ## KEGG: SAR0289 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 91 55 145 151 100 50.0 2e-20 MAEVSFVTYMALNDEIEDIPELNIKYVPTLEIFPTISHRCFDDEDFEEVYEGIKNNALEH ELSLSDKPFYHVMLDYFGGQAYEIHAEIDMDGVDME >gi|224999871|gb|ACJC01000129.1| GENE 14 6735 - 7412 593 225 aa, chain - ## HITS:1 COG:no KEGG:SAOUHSC_00270 NR:ns ## KEGG: SAOUHSC_00270 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 223 1 221 227 147 46.0 2e-34 MKLNSAIDELRKPATQVVSLFALFMILFSGIAFFYGLDYDRLPDYLKIITLIEVVIIFIS LLQFFRFVNFDKSKNVNKKTLKKYAKLLTIINIIGTYNAAFAFSNVFYVMAIQNFVDLYH YWLLSTVSMIISFTFWTLGSILMFIEMPKLEQYINGKRKTFIGIGFVLLAQLLYVERIIE YFLVPNIADSKFMILGSILVLLGIYLVTFEWIRKYADFKILVLKE >gi|224999871|gb|ACJC01000129.1| GENE 15 7426 - 7704 152 92 aa, chain - ## HITS:1 COG:no KEGG:SAAV_2550 NR:ns ## KEGG: SAAV_2550 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_ED98 # Pathway: not_defined # 1 91 209 296 441 77 48.0 2e-13 MESYDGNILRIVSENDELDGVIKKTIYSSAGDEMIIKNGKGHSMLGYLGKREQREIKAEL EKLKGYQGTNNKYLIAAKSVIKDFGKRLGSIF >gi|224999871|gb|ACJC01000129.1| GENE 16 7904 - 8362 558 152 aa, chain - ## HITS:1 COG:no KEGG:SAS0075 NR:ns ## KEGG: SAS0075 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MSSA476 # Pathway: not_defined # 5 152 6 157 458 140 54.0 2e-32 MVNNYQMDSNNMTNETESMTAISMMSYDIENANNNGLLRNKIMTQTEKLKDDNKFPSNLE YVDSYTDPNKGTTSMAFLNKDTGKVTVGMAVTNVHGDQLKNTLNPFNFIKDKQEAIDARG SMLDFVADANIGLRTVTDKDTPFKNTQQFIKN >gi|224999871|gb|ACJC01000129.1| GENE 17 8364 - 9131 677 255 aa, chain - ## HITS:1 COG:no KEGG:SERP2423 NR:ns ## KEGG: SERP2423 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 254 1 258 259 260 59.0 3e-68 MKHSRRLIIFASFLILTIFIGGCGSMTKEGNKETQIKKSFEKTLSMYPIKNLEDLYDKEG YRDEEFDKNDKGTWVIQNYMTVRNKDQNLETRGVVLFLNRNNKKATGKFYINKYDENEKS EKETYPVELKNNKIILKKSISDKHLEKEIENFKFFSQYANFKNIEKYKDGRISSNPNVPS YEAEYQLDNSDDNVKIIRDFYNVPTKKAPTLKMKSIGKLDNNSIGYKKIEYIFSQNKEEN IMFSDFINFEPSKGE >gi|224999871|gb|ACJC01000129.1| GENE 18 9318 - 9542 278 74 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00045 NR:ns ## KEGG: SLGD_00045 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 74 1 74 441 84 64.0 1e-15 MSSTEYKIKTENITSNSEETSTVSKVSYEIENANDNNLNRDAIREQIKDYKIKGEFPSNL EYVDNYIDPNIRTT >gi|224999871|gb|ACJC01000129.1| GENE 19 9545 - 10249 705 234 aa, chain - ## HITS:1 COG:no KEGG:SERP2453 NR:ns ## KEGG: SERP2453 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 234 26 259 259 358 86.0 8e-98 MNKDDSKETEIKKSFNKTLSMYPIKNLEDLYDKEGYRDEEFDKDDKGTWTLYSEMAIQRK GDDLETRGMVLKVNRNTRTSKGNYIINKISTDSKGVSQNTQKKYPIKMENNKIIPTERIE NFNVKKEIEEFKFFSQYANFNSLKDYKNGNIATNPKVPSYSAEYDLENSDYNVKQLRKRY DIPTQQPPKLLLKGTGDLKDSSIGSKDIEFTFIEKPKENIYFSDSLEYKPSEGH Prediction of potential genes in microbial genomes Time: Sun May 29 07:55:40 2011 Seq name: gi|224999870|gb|ACJC01000130.1| Staphylococcus epidermidis W23144 contig00171, whole genome shotgun sequence Length of sequence - 9232 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 5, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 304 - 363 13.9 1 1 Tu 1 . + CDS 388 - 1464 1145 ## COG3949 Uncharacterized membrane protein + Term 1524 - 1575 8.1 - Term 1512 - 1561 12.3 2 2 Op 1 27/0.000 - CDS 1610 - 2827 1154 ## COG0732 Restriction endonuclease S subunits 3 2 Op 2 . - CDS 2820 - 4376 1634 ## COG0286 Type I restriction-modification system methyltransferase subunit 4 2 Op 3 . - CDS 4377 - 4958 460 ## SERP2473 hypothetical protein - Prom 4986 - 5045 13.5 - Term 4981 - 5046 4.7 5 3 Tu 1 . - CDS 5048 - 7840 2707 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases - Prom 7945 - 8004 5.9 6 4 Tu 1 . - CDS 8110 - 8739 414 ## gi|242243198|ref|ZP_04797643.1| hypothetical protein HMPREF0791_1724 - Prom 8834 - 8893 7.9 - Term 8845 - 8898 -0.1 7 5 Tu 1 . - CDS 8902 - 9102 172 ## SH0026 hypothetical protein - Prom 9146 - 9205 1.5 Predicted protein(s) >gi|224999870|gb|ACJC01000130.1| GENE 1 388 - 1464 1145 358 aa, chain + ## HITS:1 COG:SA0609 KEGG:ns NR:ns ## COG: SA0609 COG3949 # Protein_GI_number: 15926331 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Staphylococcus aureus N315 # 31 356 1 323 326 226 38.0 5e-59 MSKENKTAIKITLAYLSFIVGAGFTTGQELLQFFVNHGNYAYIAAMITGIIVTFGTRQTS KVGYRLDANQYDISLHSLFGKVLGTIIDYLIVFFLFGLTVVMIAGGGSALQQGFNVPTWI GSFIIVLLLFFILLLNFNKIISVLGIVTPFLVIAVFIIAGFNIIQPTVPFNEVAQHIQPS KTNTPHAWWWDAILYGGIIIGNSFSFLTIIGGDAETHKIARRGAAYGGIVFSILLLIMIA GLLANVEKANSVDIPTLLLAKDIHPWLGVLMSAVMVGVIFNSCVGMIYPFLIRFSDFRTP RYFILLISSLVLAFILSFVGFADLINIVFPIVGYIGLFIAIALLIRWVYNKTTQKKLM >gi|224999870|gb|ACJC01000130.1| GENE 2 1610 - 2827 1154 405 aa, chain - ## HITS:1 COG:SA0392 KEGG:ns NR:ns ## COG: SA0392 COG0732 # Protein_GI_number: 15926110 # Func_class: V Defense mechanisms # Function: Restriction endonuclease S subunits # Organism: Staphylococcus aureus N315 # 2 405 4 403 403 159 37.0 7e-39 MTKHTNTPELRFPEFSKEWEFQELGNLAQFSKGKLLSKKDLNISGIPCILYGELYTRYGA ILNKVYSKTDSKKNSLVFSKKNQILIPSSGETDIDIATATAINTDLKIAIGGDLNIITPI NSDGRFISLYINGKGKHNLAKYAQGKSVVHLYNSDIKKLKFYLPSNNSEQQKIGDFFSKL DQQIELEEKKLELLEQQKRGYMQKIFSQELRFKDENGNAYPEWEVMKLKDILSERKEYAS KIGNYPHATLSTSGISLKSDRYNRDFLVKDKNKKYKVTIMNDICYNPANLKFGVITRNHI GSAIFSPIYITFEVNNAHSPLFIELLVTRNDFINRVRKYEQGTVYERMAVKPEDFLNYET KIPCLEEQEKIGNFFSKLDKVINKQRQKIDELKLRKQGLLQKMFV >gi|224999870|gb|ACJC01000130.1| GENE 3 2820 - 4376 1634 518 aa, chain - ## HITS:1 COG:SA1626 KEGG:ns NR:ns ## COG: SA1626 COG0286 # Protein_GI_number: 15927382 # Func_class: V Defense mechanisms # Function: Type I restriction-modification system methyltransferase subunit # Organism: Staphylococcus aureus N315 # 1 516 1 516 518 767 76.0 0 MSTTEKQRQQQAELQKKLWSIANDLRGNMDASEFRNYILGLIFYRFLSEKTEEEVAELLK EDNISYAEAWENEAYREALQQELINLIGFVIEPQDLFSHLIQKIETQTFEIEDLHKAINK IEESTRGEDSEEDFDHLFADMDLNSTRLGNTNAARTKLISKVMVNLATLPFVHSDIEIDM LGDAYEYLIGQFAANAGKKAGEFYTPQQVSKILAKIVTTNKPNLKNVYDPTCGSGSLLLR VGREADVRFYYGQEYNNTTFNLARMNMLLHDVNYTRFKIDNDDTLENPAFRGEKFDAVVA NPPYSAKWSADPSFLDDERFSGYGKLAPKSKADFAFIQHMIHYLDDNGTMAVVLPHGVLF RGAAEGTIRKYLIEEKNYLDAVIGLPANLFFGTSIPTSILVFKKCREDSDNVLFIDASQS FEKGKNQNHLTDEDVDKIVETYRNRETIDKFSYVASLDEIKDNDYNLNIPRYVDKFEEEE PIDLEQVQQQLSDIDKEIANVESEINDYLKELGVFKYD >gi|224999870|gb|ACJC01000130.1| GENE 4 4377 - 4958 460 193 aa, chain - ## HITS:1 COG:no KEGG:SERP2473 NR:ns ## KEGG: SERP2473 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 193 36 228 228 348 97.0 9e-95 MSQISQLFTFHNGSLINRLETVEASQGITLPIYDQRMMEFDDGVFQPATHQPKQVTLSTT HQAKMVHTGDIVINMMTSECVIVSQQHHESILPYNYTHIEIDTTHIDANYFVYWMNASAQ AKSQLNQFKQGGSLVKKLTLNQLKQLKMTLPPLEQQQRIGKLDERRRHLKYLQAKRTYLM DQFLSEYLFKEKI >gi|224999870|gb|ACJC01000130.1| GENE 5 5048 - 7840 2707 930 aa, chain - ## HITS:1 COG:SA0189 KEGG:ns NR:ns ## COG: SA0189 COG0610 # Protein_GI_number: 15925899 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Staphylococcus aureus N315 # 1 928 1 929 929 1034 59.0 0 MVYQSEYALENEVLQQLEDLGYERVNIHNVEQLHDNFRTIINERHKDKLNGKPLTDREFE RLMTGINGKSVFDSAMQLRDRYVLKRDDDTDLYIDFMNLKQWCQNKFQVTNQISVKDKYK SRYDVTILINGLPLVQIELKRSGVAITEAFNQIERYRRQNYTGLFRYIQLFVVSNKMETR YYANSDREIFKGQMFYWSNEQNERINYLKDFIEDFLEPCHIAKMISRYMIVNETDKILMA LRPYQVYAVEAILNRALETNNNGYIWHTTGSGKTLTSFKASQLLSQEENIKKVIFLVDRK DLDNQTLAEFNKFQEDSVDFTDNTRKLLRQLADPTSPLIVTTIQKMANAVKSNHSVMESY KQDKVIFIIDECHRTQFGDMHRLIKQHFENAQYFGFTGTPRFEENKSQDGRATADIFDKC LHHYLIKDAIRDHNVLGFSVEYNQTFNSHEDLDEEYISKINTSEIWMADERIEAVCRHLI SNYHKKTDNGNYTSMFAVQSIPMAIKYYDTFQRLKNEGVHDLNVATIFTYQANEDAQEDD NHVHSREVLDRIMNDYNQTFKTNYNTDNFEGYFSDVSKRMKEVVRDDKIDILIVVNMFLT GFDSKKLNTLYVDKNLKHHDLIQAYSRTNRVEKERKPYGNIVCYRDLKKQTDEAIEIFSQ TDNTDTVLSLSYEEYLDNFRDILQDVFQLAPTPLDVDKLEAEDLKKEFVISFRDLSNTLI KLKTFDEFQFTEDELGIAEQTYEDYKGKYLNIYEEVMRGKKVDGEEGVSVLDDIDFQVEL MRNDLINVKYIMDLIGQINLSDAKARDEKRHQIHKLLDKADDQQLRLKAGLIRSFLDKVV PSLKEDSDINEAYYEFEDKEKTKEIDAFAEQKAFSAMLLNEAVNEYEYSGNIDRKSIGQN ISEPFMKRKRKTDQIIQFIEDTVEKYGVVE >gi|224999870|gb|ACJC01000130.1| GENE 6 8110 - 8739 414 209 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243198|ref|ZP_04797643.1| ## NR: gi|242243198|ref|ZP_04797643.1| hypothetical protein HMPREF0791_1724 [Staphylococcus epidermidis W23144] # 1 209 1 209 209 380 100.0 1e-104 MNKVRMVTYEPMIFKKRKGNKIVKNNVDILPYLDASFRTEPSLNVEYPGISSLCRGEKLA PKLKKGDKVVYIAKKNKYNQDFKHWRLVAILEVIEIKSCHYAASKWYEENNYTLPKNCIV DGNPPLSLDKTTVKDQSTIDERERGYNYRAKKYPQFNICKKIYLNLETPPIITEEKMKEI FDNKIPVIQNYKILNENQYRELERLSQNN >gi|224999870|gb|ACJC01000130.1| GENE 7 8902 - 9102 172 66 aa, chain - ## HITS:1 COG:no KEGG:SH0026 NR:ns ## KEGG: SH0026 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 66 1 66 323 96 80.0 3e-19 MKELEKVLKNLHISEDVKRTVQSMNKDGMQLLNDYYDENSNLYQRAQLETIANEFYADPN IIKKLY Prediction of potential genes in microbial genomes Time: Sun May 29 07:56:01 2011 Seq name: gi|224999869|gb|ACJC01000131.1| Staphylococcus epidermidis W23144 contig00172, whole genome shotgun sequence Length of sequence - 24334 bp Number of predicted genes - 23, with homology - 23 Number of transcription units - 10, operones - 6 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 12 - 68 14.5 1 1 Op 1 17/0.000 - CDS 155 - 790 407 ## COG1124 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 2 1 Op 2 44/0.000 - CDS 783 - 1550 260 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 3 1 Op 3 49/0.000 - CDS 1517 - 2284 562 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 4 1 Op 4 38/0.000 - CDS 2284 - 3240 700 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 5 1 Op 5 . - CDS 3243 - 4796 1525 ## COG0747 ABC-type dipeptide transport system, periplasmic component 6 1 Op 6 . - CDS 4793 - 5485 872 ## SH0146 hypothetical protein - Prom 5548 - 5607 6.1 - Term 5773 - 5823 4.0 7 2 Tu 1 . - CDS 5840 - 6448 615 ## COG1114 Branched-chain amino acid permeases - Prom 6678 - 6737 9.3 + Prom 6642 - 6701 12.9 8 3 Op 1 . + CDS 6850 - 7899 1288 ## SSP0055 hypothetical protein 9 3 Op 2 . + CDS 7934 - 8683 714 ## SSP0056 hypothetical protein 10 3 Op 3 . + CDS 8733 - 9710 1145 ## COG4086 Predicted secreted protein 11 4 Tu 1 . + CDS 9779 - 10468 235 ## gi|242243211|ref|ZP_04797656.1| hypothetical protein HMPREF0791_1737 + Term 10572 - 10627 -0.4 - Term 10323 - 10369 -0.9 12 5 Op 1 . - CDS 10607 - 11155 524 ## gi|242243212|ref|ZP_04797657.1| conserved hypothetical protein 13 5 Op 2 . - CDS 11148 - 12140 782 ## Sbal195_2015 hypothetical protein - Prom 12261 - 12320 8.1 14 6 Tu 1 . - CDS 12340 - 13656 911 ## spyM18_0035 hypothetical protein - Prom 13764 - 13823 6.8 15 7 Op 1 . - CDS 13907 - 15022 715 ## COG0542 ATPases with chaperone activity, ATP-binding subunit 16 7 Op 2 . - CDS 15006 - 15776 678 ## CKR_3386 hypothetical protein - Prom 15880 - 15939 9.2 + Prom 15729 - 15788 5.8 17 8 Tu 1 . + CDS 15872 - 17323 684 ## SSP0039 hypothetical protein + Term 17331 - 17385 12.5 + Prom 17346 - 17405 2.9 18 9 Op 1 1/0.000 + CDS 17443 - 19233 1545 ## COG5519 Superfamily II helicase and inactivated derivatives + Term 19373 - 19434 7.4 + Prom 19381 - 19440 4.7 19 9 Op 2 2/0.000 + CDS 19467 - 20816 1109 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 20 9 Op 3 . + CDS 20838 - 22466 1348 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Prom 22730 - 22789 11.0 21 10 Op 1 . + CDS 22988 - 23338 287 ## USA300HOU_0064 hypothetical protein 22 10 Op 2 . + CDS 23425 - 23736 255 ## USA300HOU_0036 hypothetical protein 23 10 Op 3 . + CDS 23751 - 24257 615 ## COG4333 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|224999869|gb|ACJC01000131.1| GENE 1 155 - 790 407 211 aa, chain - ## HITS:1 COG:nikE KEGG:ns NR:ns ## COG: nikE COG1124 # Protein_GI_number: 16131352 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Escherichia coli K12 # 33 199 45 218 268 109 39.0 3e-24 MLKIERLTKYIDGKLIFKDISCAINDQHLLISGESGCGKSTLAKIIAGLDMNYQGNLYFN GQLRKSYTAKEWMKHIQYVPQYQRDTLNQHKTVLSTLLEPLKNYKFDKQSYTSRIEAVLR QCKLPQSILNQSISTLSGGQFQRVWIAKALILEPEILILDEATTNLDVINEEEILQMLIT LKQTQLIIISHDAYVLSRFKGVQLQLKQLNN >gi|224999869|gb|ACJC01000131.1| GENE 2 783 - 1550 260 255 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 29 246 294 521 563 104 28 5e-22 MSNDQQKNNAMNTVVKVNQLSILDHNRSLLNDVNLTITKGAFHCIIGESGSGKSLLTRTI LGMKPSQLSYQGNIKIDLNKADAVFQDVQSNMFQNVNLAKHFQYIYEANYSQLSKQDIKE DVLDKMQLLGLNQGEQLLKRYPFELSGGMAQRVAFIMSLIRRPDYLFLDEPTSALDQENV KKFMHYLIKAQEHYQMTIVFITHDINLVKDYATHISIMQQGQLIESGEASSILANPTHSY TKNLIAIAHRRQSYA >gi|224999869|gb|ACJC01000131.1| GENE 3 1517 - 2284 562 255 aa, chain - ## HITS:1 COG:FN0398 KEGG:ns NR:ns ## COG: FN0398 COG1173 # Protein_GI_number: 19703740 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Fusobacterium nucleatum # 30 239 55 265 289 149 37.0 6e-36 MKKYQTYIAISAILSVIFVLIVYCFMQDTQNLDPLQSPNSQHWLGTDQLGRDFLVRLIVG SLVTLSLTSVVILLSVCIGLVFGLIAGIERKWLDQIIMFIADMLLAIPSFIIALVILSLV NNSMLGLILALTIGWIGRYLRYFRNLTRDIQKRPFVSYAKLSGNSTFKTTVTHVIPHLLS NIFALVTADFGKMMLSISGLAFLGLGIKPPTPELGTILFDGKSYFNGAPWLFFFPGVLLG DFALLCQMINKKITQ >gi|224999869|gb|ACJC01000131.1| GENE 4 2284 - 3240 700 318 aa, chain - ## HITS:1 COG:BH2075 KEGG:ns NR:ns ## COG: BH2075 COG0601 # Protein_GI_number: 15614638 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Bacillus halodurans # 1 304 5 308 310 139 30.0 8e-33 MLKRTIKLILYLIVSSFIIFVLVEKTSGNPAILYLQRHGYTSITQENIEAAQHKLGLGQH FLLRYIDWVGHALTGNLGYSFSTNEPVTTMIMEAVIPTLILIVVSSCIMLPLGYMVGYFI GTRPHTRYANGIRGFAQVMTSMPEYWLAILFIYYLGVRWQLLPFVGSDSWQHFVLPIFTI VVIEGCHILLMTSHLIAQTLDNDAYQLAQLRHYSLKARIIVQIKEIFAPLMTISINSVIH LIGKVVILEVIFSMSGIGKLLINAINQRDYPLIQGIVVFIIVLIMFINYLGDIIILNNEP RLRRRHTKRQAHEKRGVS >gi|224999869|gb|ACJC01000131.1| GENE 5 3243 - 4796 1525 517 aa, chain - ## HITS:1 COG:MA3455 KEGG:ns NR:ns ## COG: MA3455 COG0747 # Protein_GI_number: 20092267 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Methanosarcina acetivorans str.C2A # 27 514 49 530 538 269 32.0 1e-71 MKKRVLITMAASATFLLAGCGNDQKEDKNITVSLPTEAKADKLDAQGYDAAMPVYSAVYD PLVKYDKDKGVKAGLAEKWHVDDSGKVYEFHLKKNVKFSDGSALDAKAVKFSIERAKAMN KDTTVETLKKLDKVVVKNDHVVQIRLKSPSNQVLNELTQVRPLRIMSPHSVENGKVNGKF EKAIGTGAFVVNKTGKEKTTMKPNKYFNHSHPVNYNLAFQTIEDGDSRDSAVQSGSVDIS GGALGMLSDQQIKQDKKNKKLTVEDKPSTVSHFMAFNPDKNVLKQRTIREAISKSIDTKD IAGKSVNGLFQKNVEFVNKDNQQAHDYDVKDAEKLLKEAGYHKNSDGIFEKDGKSLTFNL VIQTAEFPSWKDKAEKVQRQLKKAGIKLNVKTLDSQSYYDTLWTKKDYDLIFYRTYSDAL MPYNFMSSVFKNNDGKSGVLANDKTLTQQLDDFPTTVSKKEQQRSFDEIFKHFNQQYYGV PIAYPNETFVVSDKVKQFKFSGLTDAPIDYKALKVNE >gi|224999869|gb|ACJC01000131.1| GENE 6 4793 - 5485 872 230 aa, chain - ## HITS:1 COG:no KEGG:SH0146 NR:ns ## KEGG: SH0146 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 230 1 230 230 448 99.0 1e-125 MTKSYDVWWQKGQESDDDMACDHQEAWERTIEMLDTSDIKGKTILDVGCNQGGFLRKLYD TTPFKEGVGIDLARLSLEKAETLKGERPLTYYLTDKPQETNRTFDTAVSTSVLYLIEDIP QHAQDLKEVLKPGGVYYASFADLTNNPSSQFMDDTINQYGATPSQNHSLKHIVDSFVDAG FEVAVMKEPVPDVIDLTHYSDFYLSPNDYLQTLYEESFLIKASVKEGIGK >gi|224999869|gb|ACJC01000131.1| GENE 7 5840 - 6448 615 202 aa, chain - ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 197 244 447 449 211 63.0 8e-55 MGIIYTLLALMGTMSLGHFKVSENGGIALAQIAQHYLGDYGIIILSLIIIVACLKTSIGL ITAFSETFTELLPKMNYLWLATGVALLACIFANVGLTKIIMYSTSVLMFIYPLAITLILL TLVSPLFNHSTIVHKFTTFFDGVNACPEFFAKTSFAQALISFAERYLPFFTIGMGCIVPA IIGFVVGLIVYLIRSRRQTQTQ >gi|224999869|gb|ACJC01000131.1| GENE 8 6850 - 7899 1288 349 aa, chain + ## HITS:1 COG:no KEGG:SSP0055 NR:ns ## KEGG: SSP0055 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 349 1 357 357 167 54.0 5e-40 MKLKTLCCISLSSMFLFSACGQNSNETSHNNNQKTEKKSNTNETSNNQNSNKNKSDNSNE TQSSNEQVEHSDKTITVAEAKSIVYNSANSQSFKAFVQNKDELIFNKDKSNNNEIFIETP FGGINESVKLYAIVNRHTGEIITTGSAGTHADGLIKTDDGKIDKKAYNITLEFYNTYVYK KGMPKFEEATSDMPAEEYKKLSQLVGDYTKKQKQNENKEPQTNNNTQNEANSIQSNDRDK TQSTTNERTNQQHNTNEKQKNDQASKQEQQSEEQQENRNEESSQNEEREDPNQQIEQPSS EDKQTPDATQENNNQNNDENTDDKNYENEQTQDVESKGSGNDKETSNAS >gi|224999869|gb|ACJC01000131.1| GENE 9 7934 - 8683 714 249 aa, chain + ## HITS:1 COG:no KEGG:SSP0056 NR:ns ## KEGG: SSP0056 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 249 1 249 249 427 89.0 1e-118 MVSVTQRISQIKQPRGGYLNRKSFEVKQLEPETFIDTKNENIAPQTIGLVVDYLTRMMTN QDKEKSFSISLIGAKLAGELQTAESLLKDINDNDDLSIIKACQLVNYDMVYRAGRTPKEA KIPDQDTILNIKSLINRSLSFFDRVGEVKVDSFTFEGGYTSIINAGDGDFLTEDTLWDFK VSKQLPQKNSTLQLVIYYLMGKASQKPMFENIRYIGIYNPRFNQIYKYDMTQSDPEMIKE VSKNVIGYD >gi|224999869|gb|ACJC01000131.1| GENE 10 8733 - 9710 1145 325 aa, chain + ## HITS:1 COG:SP1027 KEGG:ns NR:ns ## COG: SP1027 COG4086 # Protein_GI_number: 15900898 # Func_class: S Function unknown # Function: Predicted secreted protein # Organism: Streptococcus pneumoniae TIGR4 # 16 313 24 321 324 120 33.0 3e-27 MKKTLTSLAVATLLLSATGVVKAADNKEDWDEPVFIKGADLEGQDLQQTEDDLGVDDNYE TYSVNVNDVSNYIPNSNNLSYIYSSATIEHKKWGKGVDVKIDTPDHITKVTSEQYQNAAI TAGIKNAEIHIASVEPVTGEGALAGIYKAYEEKGNDLNTEDIQNSNQEMNDLGTISEENK GKDGYSDEALNASIADIKEQLADIKQNQDKQITQQQVEDTVNKVLDERELSEILSDNQIQ MINNNMINVANSNALTSDPKAFKQNAKDVLKNIEKNSDDLLNKAKNKAKDLNTEENRNLL QRIWDGIVEIIQSIIQFFSNLLNKL >gi|224999869|gb|ACJC01000131.1| GENE 11 9779 - 10468 235 229 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243211|ref|ZP_04797656.1| ## NR: gi|242243211|ref|ZP_04797656.1| hypothetical protein HMPREF0791_1737 [Staphylococcus epidermidis W23144] # 1 229 5 233 233 420 99.0 1e-116 MSILSTIIGGLCTIIGGLIAVWCRNFIENKRKVQQVEEQFRLLIPKLHFCVEKINQLTDL NSAIWGEQIHSLGFPPNGLELWNGKTELKHNDLETFKYLLANFDDLSTNEDILNTFIDEG VKLKESQITEIKNFLKYTYTKNKTQDQIPSNLMIILKTSEDIIQQTSTSLYLMNDKKRQL IHELNTYIHYLLNSLQKIPNTDAYKLTITNYYFVFHIIIYQLELILNKK >gi|224999869|gb|ACJC01000131.1| GENE 12 10607 - 11155 524 182 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243212|ref|ZP_04797657.1| ## NR: gi|242243212|ref|ZP_04797657.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 182 1 182 182 340 100.0 2e-92 MNDKINHLIKITAWPTGIFLLLLIIVSCTVWQIGWIDIISYTVTISTFITIGYERFMWKW KLFRIFNKQADISGDYEATLRHFYGEGGIKKVSVEIKQTFLTVNIELRSDEITSNSITAD IIEEHGKNILYYTYITNPKAEFEKKNPINRGTTRLIVGENELTGKYWTGAKTTGDLRLKK LK >gi|224999869|gb|ACJC01000131.1| GENE 13 11148 - 12140 782 330 aa, chain - ## HITS:1 COG:no KEGG:Sbal195_2015 NR:ns ## KEGG: Sbal195_2015 # Name: not_defined # Def: hypothetical protein # Organism: S.baltica_OS195 # Pathway: not_defined # 11 323 6 298 299 126 31.0 1e-27 MNGGANLLFTEEQLKLYSKPLSESEKEKCENAIRIIQESLESLGYEIKKGIHRNNEDTLS YQIKMTNPSKDYELSIFVKGSYATNTNVRQNSDVDIAVVKESEFFDKYREGKTRENYNFI SSNKPPYHFKDEVEEALIERFGRSEVRRGNKAIRINGNTYRKETDCVPCFRYRDYSNDYM DDPNNFIGGITIYSDKGERIINYPEQHINNSVIKNNNTNYKYKKMVRIIKEIRYQLIDSK NRNAEQTSSFGVEGLFWNIPDYKYSNDEMLGDTFNALIAFLIDNIDKLSEFKEPNDILYL CDSQEKINVYKNFILDVKNYFEYSGEKKYE >gi|224999869|gb|ACJC01000131.1| GENE 14 12340 - 13656 911 438 aa, chain - ## HITS:1 COG:no KEGG:spyM18_0035 NR:ns ## KEGG: spyM18_0035 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_M18 # Pathway: not_defined # 1 208 1 207 446 150 41.0 1e-34 MEIKEFKKWLVEKGFDEDELFKESIKTYNAEAYKASYLFSYLAFMNIIKKRIMNYSKVPS SFERKIENENIRQKKWKEKLDDLRDEEKWEQALFNLIKQQTDKNIFDLKTSVSDSFVEKR ILRNVAAHNKKRKIDDSTVNELWNLFEYSLEYFEINGSYQTWLDRLDLISTFSNEEEIEK NIKKLMQDYKQLSMKSRKIIFQKVIEEYNNAFKFDSSNRYKIIKIIIEKLVSNLDEDIHN FIDTVEQDIFVFLNNESYNLKFVNYKIREYALETKVNKVIQMIKESSLPCKVNKLLILIN SSDYEENWIRIIEKVNENNRKLIGFSEDLLELISGSFDHISNKCQNLFTFKNSNNNLQHT ETVDYLKWTIYKFYWITALNIIIKKKINTDISIDIIKRTKKLLDFDYDIPYYKQNYLFII EDIKNNVENIEYIENYNI >gi|224999869|gb|ACJC01000131.1| GENE 15 13907 - 15022 715 371 aa, chain - ## HITS:1 COG:DR1117 KEGG:ns NR:ns ## COG: DR1117 COG0542 # Protein_GI_number: 15806137 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATPases with chaperone activity, ATP-binding subunit # Organism: Deinococcus radiodurans # 85 325 410 667 747 77 24.0 3e-14 MSYQIKIVMGPKSYLNEFLHQPYITLEDYIIKIDSLTRNLVEKFTDNNYEEILKDKIILA KTESYSGITSAALSNFIQIVNKSIEFGNGIILQNPPKSVINQIKNSFDENQYAFCEYEYP KLDLAVLSNIKERSTEQLFGQVNAIKRILASLYKLTKESRKSIVLMLYGPSGVGKTEMSK IISECLGGKLFRKQMSMNKTNYMFDYIFGNNHGEPSLARDLLERESNIVLLDEFDKGVNE INSAFYQLFDEGIFEDSQYKVTMRNSIIICTSNFKGEAQIRRELGDPIYYRFDDFIEFAE LNDEAKKNILTRILSEEFNKLSDNEKSLLPREEILLKQYMIKIKQFTNYRHMKKLVENDI NLRLISAMLNF >gi|224999869|gb|ACJC01000131.1| GENE 16 15006 - 15776 678 256 aa, chain - ## HITS:1 COG:no KEGG:CKR_3386 NR:ns ## KEGG: CKR_3386 # Name: not_defined # Def: hypothetical protein # Organism: C.kluyveri_NBRC # Pathway: not_defined # 1 250 67 313 313 120 32.0 6e-26 MKLIYFDESTASDYLKIIQNGRESKQTIETKKNQKQTSLGGKFGIGPMFSKVFESLFSIE GNMGGNINRTSEKYVEKTLTNAILSDFKNLAENEELGIKKFSEYKLSYVENSIAHFQTIS PYLSMLDGNIVLDQEVSININKMHETLKLGKGYYEILAKKNENECIVRFNNKAFVNNYNL TDLSQMQLTLYGVKVGIIDINQLNFQNAINSIGFQNKVVTSISEETVNRSFNNEQSILEM YDIILAGVEVENELSN >gi|224999869|gb|ACJC01000131.1| GENE 17 15872 - 17323 684 483 aa, chain + ## HITS:1 COG:no KEGG:SSP0039 NR:ns ## KEGG: SSP0039 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 8 483 1 475 475 678 87.0 0 MRKGRSILNFENYKYFTGKDLMKECNLSEKMFKNSMDKLERVYKLDITKYKSNPSATNSG YSFNLFELELFKILLNTIEDFPVPTSAKKFDDIDLREEALKKNNSHFIRYITNITDSIDN IKNDALKAQIYASENYSFTLEWLSAQSKCSDALSSFFNYTNSLDLDRSSKLYRKLAHRID ELMFETLMEDNMTYDNEFNFKQLYKVHQYDKENNAETFVVYNHVEPDDSKNSNENHGVTK YISNKPSITKYSERTDNKLLDFFIIDILNKLYLPSLNKRINHKITAYDIQNGDESKIREK IRKMEIVKYPFNVNGYFLDIEDDLFTNYQRIINTIDVYKSSTFDLQNFESRIDNIINSSK PLISNDKFFNIYKDFYLSLSKFSNLFHINRQSYIHDGINSNQVDSFLNDLYRIHLLLDKY SSNKDIEPLSKINFTELTNAFQLFKEIKSTQIKDEIVSKKVNDLSSWSIAKALSETLNDL NFE >gi|224999869|gb|ACJC01000131.1| GENE 18 17443 - 19233 1545 596 aa, chain + ## HITS:1 COG:SA0059 KEGG:ns NR:ns ## COG: SA0059 COG5519 # Protein_GI_number: 15925766 # Func_class: L Replication, recombination and repair # Function: Superfamily II helicase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 3 596 5 597 597 940 80.0 0 MNNNIFKQYPYFLNSNGFYEVIPPKSNNDVEKIIQLSSPIIIENKFLDPSTGVEKLIITD GKNIERIEASDILTSFKLPGLIKYGFNINERYIKSLSYALQSMRQSLPLSKLYTGVGVLQ SDDEGMVISLDKPYFSKEIEQSQANEIICETHYDLQPKGTFKGWWEMYLKQVKGNLLLEL AVIFGISALVTSFLRHKHATEFAGIIFSFTGQSSTGKSTAASLAVSVAGNPTKGNETLFR SWNATRNALEGYLSNNYGIPIVFDELSSATFRDTTGLLYSITEGQGRQRSNVHGEVKTPK NWGTSVISTSEYSIFNDSAQNDGLRVRTIEINERFTKDATNSDNIKKTVALNYGHVLPLV AKYLINREDEVIQWFKEEHDWFNESLKDETNNTGIRMFKRYAVITTSAKILGRVLSTDID IANIRDYFIDYHTHTVSERSLADKAIDVIIQFVAQNRGKFSDEGALKNMFENYGLISLKD DHIEVKMIANVFKQMLNNHQFQDVNNVVNALRDKGFILADRGRQTTKRSVKDNSGKKQSL VFYHLKLDVEFASILGLTKDKSLLQNWTPSNDNKAAKELFKSANEGIGPSGVHEDF >gi|224999869|gb|ACJC01000131.1| GENE 19 19467 - 20816 1109 449 aa, chain + ## HITS:1 COG:SA0058 KEGG:ns NR:ns ## COG: SA0058 COG1961 # Protein_GI_number: 15925765 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 449 1 449 449 785 96.0 0 MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQITQL IQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRLKLNIF ISLAELESDNIGEQVKNGLQEKAKQGQLITTHAPFGYDYHNGTFIINQNESPTVKAVFNY YIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIMNPNYCGRVINQYGQFDNMFPSIVSANV YEQAQRLRLQKQTKQTSSDNQLKQKIKCPCCNATLTNMTVRKKNHILRYYVCPKNMNASR FVCDFKGINAQTLEDKVLEVCRDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHILTQEQLI EKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIH ITKDKNLIGIYFKNEPLNIVNQTMQSSIA >gi|224999869|gb|ACJC01000131.1| GENE 20 20838 - 22466 1348 542 aa, chain + ## HITS:1 COG:SA0057 KEGG:ns NR:ns ## COG: SA0057 COG1961 # Protein_GI_number: 15925764 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 542 1 542 542 1014 99.0 0 MQQLKTKRVGIYVRVSTEMQSTEGYSIDGQINQIKEYCDFHHFEVKDIYADRGVSGKSMN RPELQRILKDAKEGYIDCVMVYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTS SGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGNLPLGYDKIPNSKHELMINQH EANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGKPFSISSITYILANPFYIGKIQFAK YKDWSEKRRKGLNDKPVIAEGKHSPIINQDLWDKVQMRKKQVSQKPQVHGKGTNLLTGII HCPQCGAPMAASNTTNTLKDGTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEDYVMKQI LEIVKSDKVIQRVVTHVNQENQVDGAALHHDIAYKQQQYDEVQIKINNLIKTIEDNPDLT SVIRPSIQKYEKQLNDITNQINQLKNQQNEDKTLFDAKEISKLLQHIFHDIKHIEKSRLK ALYLSVIDRIDIKKDGNHKKQFYVTLKLNNEIIKQLFNNKQLDEVHLSTSSLFLPQTLYL TI >gi|224999869|gb|ACJC01000131.1| GENE 21 22988 - 23338 287 116 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_0064 NR:ns ## KEGG: USA300HOU_0064 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 116 1 116 116 184 86.0 1e-45 MKTITQELKQYITHLFQLSNNEAWECEALEEAAENILPERFINDSPLVHLTLETYTYYND ELHELSIYPFLMYANNQLISVGYLDHFDMDFLYLTDTQNIIIDERHLLKQGGQDHE >gi|224999869|gb|ACJC01000131.1| GENE 22 23425 - 23736 255 103 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_0036 NR:ns ## KEGG: USA300HOU_0036 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 103 1 103 103 172 100.0 3e-42 MKINRYITRGINESIPLDLQILLWHMVEKKDNQPHTDYLHIFKLQEDENILSITHEQEQP TYKLEYHYTNYEKNQNALPKKVYVIREDDVDAFYYVMLLPEEY >gi|224999869|gb|ACJC01000131.1| GENE 23 23751 - 24257 615 168 aa, chain + ## HITS:1 COG:SA0054 KEGG:ns NR:ns ## COG: SA0054 COG4333 # Protein_GI_number: 15925761 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 168 5 172 172 276 92.0 1e-74 MNTIKSTIHTEAIFSDDEQHRYLLKKTWDEKKAACTVITMYPHLDGVLSLDLTTVLILNQ LANSERYGAVYLVNLFSNIRTPENLKHIKNPYDEHTDIHLMKAISESDTVILAYGAYAKR PVVIDRVEQVMEMLKPHKKKVKKLINPVTNEIMHPLNPKARQKWILKS Prediction of potential genes in microbial genomes Time: Sun May 29 07:56:57 2011 Seq name: gi|224999868|gb|ACJC01000132.1| Staphylococcus epidermidis W23144 contig00173, whole genome shotgun sequence Length of sequence - 6030 bp Number of predicted genes - 7, with homology - 7 Number of transcription units - 4, operones - 3 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 17 - 325 243 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 2 1 Op 2 . - CDS 249 - 1133 325 ## COG4219 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component - Prom 1253 - 1312 7.0 3 2 Tu 1 . + CDS 1335 - 3341 1943 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Term 3347 - 3393 9.6 - Term 3330 - 3386 13.3 4 3 Op 1 . - CDS 3387 - 3815 493 ## COG2030 Acyl dehydratase - Prom 3843 - 3902 4.5 - Term 3850 - 3908 9.4 5 3 Op 2 . - CDS 3912 - 4655 703 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Prom 4689 - 4748 8.0 6 4 Op 1 . - CDS 5204 - 5434 107 ## SACOL0030 hypothetical protein 7 4 Op 2 . - CDS 5532 - 5699 165 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Prom 5925 - 5984 9.8 Predicted protein(s) >gi|224999868|gb|ACJC01000132.1| GENE 1 17 - 325 243 102 aa, chain - ## HITS:1 COG:XF2739 KEGG:ns NR:ns ## COG: XF2739 COG0610 # Protein_GI_number: 15839328 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Xylella fastidiosa 9a5c # 23 101 974 1052 1058 96 56.0 1e-20 MIQCLNLIETSVLLRILYVVYRASHETAKEALGDKELRAIAHELTKTVKDNMSVDWSKRD SAKAKMRVQVRRLLKKYGYPPDLQKMAVEQVVEQAELMASQQ >gi|224999868|gb|ACJC01000132.1| GENE 2 249 - 1133 325 294 aa, chain - ## HITS:1 COG:SA0039_1 KEGG:ns NR:ns ## COG: SA0039_1 COG4219 # Protein_GI_number: 15925746 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component # Organism: Staphylococcus aureus N315 # 1 291 35 325 333 527 100.0 1e-150 MSHKIWLLVLVSTLIPLIPFYKISNFTFSKDMMNRNVSDTTSSVSHMLDGQQSSVTKDLA INVNQFETSNITYMILLIWVFGSLLCLFYMIKAFRQIDVIKSSSLESSYLNERLKVCQSK MQFYKKHITISYSSNIDNPMVFGLVKSQIVLPTVVVETMNDKEIEYIILHELSHVKSHDL IFNQLYVVFKMIFWFNPALYISKTMMDNDCEKVCDRNVLKILNRHEHIRYGESILKCSIL KSQHINNVAAQYLLGFNSNIKERVKYIALYDSMPKPNRNKRIVAYIVCSISSFT >gi|224999868|gb|ACJC01000132.1| GENE 3 1335 - 3341 1943 668 aa, chain + ## HITS:1 COG:SA0038 KEGG:ns NR:ns ## COG: SA0038 COG0768 # Protein_GI_number: 15925745 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Staphylococcus aureus N315 # 1 668 1 668 668 1150 100.0 0 MKKIKIVPLILIVVVVGFGIYFYASKDKEINNTIDAIEDKNFKQVYKDSSYISKSDNGEV EMTERPIKIYNSLGVKDINIQDRKIKKVSKNKKRVDAQYKIKTNYGNIDRNVQFNFVKED GMWKLDWDHSVIIPGMQKDQSIHIENLKSERGKILDRNNVELANTGTAYEIGIVPKNVSK KDYKAIAKELSISEDYIKQQMDQNWVQDDTFVPLKTVKKMDEYLSDFAKKFHLTTNETES RNYPLGKATSHLLGYVGPINSEELKQKEYKGYKDDAVIGKKGLEKLYDKKLQHEDGYRVT IVDDNSNTIAHTLIEKKKKDGKDIQLTIDAKVQKSIYNNMKNDYGSGTAIHPQTGELLAL VSTPSYDVYPFMYGMSNEEYNKLTEDKKEPLLNKFQITTSPGSTQKILTAMIGLNNKTLD DKTSYKIDGKGWQKDKSWGGYNVTRYEVVNGNIDLKQAIESSDNIFFARVALELGSKKFE KGMKKLGVGEDIPSDYPFYNAQISNKNLDNEILLADSGYGQGEILINPVQILSIYSALEN NGNINAPHLLKDTKNKVWKKNIISKENINLLTDGMQQVVNKTHKEDIYRSYANLIGKSGT AELKMKQGETGRQIGWFISYDKDNPNMMMAINVKDVQDKGMASYNAKISGKVYDELYENG NKKYDIDE >gi|224999868|gb|ACJC01000132.1| GENE 4 3387 - 3815 493 142 aa, chain - ## HITS:1 COG:SA0037 KEGG:ns NR:ns ## COG: SA0037 COG2030 # Protein_GI_number: 15925744 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Staphylococcus aureus N315 # 1 142 1 142 142 252 100.0 2e-67 MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLS ISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSL STYNENEEIVFKGEVTALINNS >gi|224999868|gb|ACJC01000132.1| GENE 5 3912 - 4655 703 247 aa, chain - ## HITS:1 COG:SA0036 KEGG:ns NR:ns ## COG: SA0036 COG0584 # Protein_GI_number: 15925743 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Staphylococcus aureus N315 # 1 209 1 209 210 398 99.0 1e-111 MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNM SGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGL ALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIMPQYNRAVIFHTTSFREDWRT LLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNAD KMVHLSQ >gi|224999868|gb|ACJC01000132.1| GENE 6 5204 - 5434 107 76 aa, chain - ## HITS:1 COG:no KEGG:SACOL0030 NR:ns ## KEGG: SACOL0030 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_COL # Pathway: not_defined # 1 76 1 76 76 107 100.0 1e-22 MLIFLSYDFVRACLPRGMARAISLSHILFPQASALTKSVVIFIFIRILTEIILIRGIVKA ILSKIADKRFVKSSSK >gi|224999868|gb|ACJC01000132.1| GENE 7 5532 - 5699 165 55 aa, chain - ## HITS:1 COG:SA0035 KEGG:ns NR:ns ## COG: SA0035 COG3425 # Protein_GI_number: 15925742 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Staphylococcus aureus N315 # 1 55 59 113 113 88 100.0 3e-18 MLESREQLSVEEYETFFNRFDNQEFDFERELTQDPYSKVYLYSIEDHIRTYKIEK Prediction of potential genes in microbial genomes Time: Sun May 29 07:57:37 2011 Seq name: gi|224999867|gb|ACJC01000133.1| Staphylococcus epidermidis W23144 contig00174, whole genome shotgun sequence Length of sequence - 145716 bp Number of predicted genes - 131, with homology - 129 Number of transcription units - 77, operones - 30 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 212 130 ## SACOL0027 hypothetical protein - Prom 262 - 321 5.7 - Term 466 - 514 10.3 2 2 Tu 1 . - CDS 627 - 1883 1224 ## USA300HOU_0025 hypothetical protein - Prom 1940 - 1999 7.2 3 3 Tu 1 . - CDS 2205 - 2684 413 ## COG1576 Uncharacterized conserved protein - Prom 2792 - 2851 6.5 - Term 3671 - 3713 7.2 4 4 Tu 1 . - CDS 3735 - 4517 650 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I - Prom 4661 - 4720 6.9 - Term 4926 - 4985 -0.8 5 5 Op 1 4/0.091 - CDS 5147 - 5938 670 ## COG4853 Uncharacterized protein conserved in bacteria 6 5 Op 2 4/0.091 - CDS 5939 - 7276 1038 ## COG4863 Uncharacterized protein conserved in bacteria 7 5 Op 3 8/0.000 - CDS 7269 - 9101 1822 ## COG5002 Signal transduction histidine kinase 8 5 Op 4 4/0.091 - CDS 9114 - 9815 846 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 9835 - 9894 1.6 - TRNA 10291 - 10363 77.9 # Asp GTC 0 0 - TRNA 10369 - 10443 76.9 # Glu TTC 0 0 - Term 10819 - 10859 0.8 9 6 Tu 1 . - CDS 10862 - 12145 1581 ## COG0104 Adenylosuccinate synthase - Prom 12177 - 12236 9.1 - Term 12365 - 12412 8.1 10 7 Op 1 16/0.000 - CDS 12424 - 13824 1632 ## COG0305 Replicative DNA helicase - Prom 13912 - 13971 5.9 - Term 13910 - 13956 -0.7 11 7 Op 2 9/0.000 - CDS 13995 - 14441 749 ## PROTEIN SUPPORTED gi|242243241|ref|ZP_04797686.1| 50S ribosomal protein L9 12 7 Op 3 4/0.091 - CDS 14438 - 16405 902 ## PROTEIN SUPPORTED gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 13 7 Op 4 1/0.545 - CDS 16434 - 17360 804 ## COG4241 Predicted membrane protein - Prom 17508 - 17567 4.3 14 8 Tu 1 . - CDS 17588 - 18556 1082 ## COG2021 Homoserine acetyltransferase - Prom 18781 - 18840 8.2 - Term 18571 - 18619 3.9 15 9 Op 1 9/0.000 - CDS 18846 - 19175 440 ## COG4392 Predicted membrane protein 16 9 Op 2 . - CDS 19172 - 19864 558 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) + Prom 20134 - 20193 8.9 17 10 Tu 1 . + CDS 20229 - 21233 1177 ## SERP2544 beta-hemolysin + Term 21278 - 21337 1.8 - Term 21672 - 21715 6.2 18 11 Tu 1 . - CDS 21762 - 23048 1812 ## COG0172 Seryl-tRNA synthetase - Prom 23077 - 23136 7.7 + Prom 23623 - 23682 13.2 19 12 Tu 1 . + CDS 23876 - 24709 301 ## PROTEIN SUPPORTED gi|225093729|ref|YP_002662469.1| ribosomal protein S15 + Term 24911 - 24953 9.2 - Term 24899 - 24940 5.2 20 13 Op 1 24/0.000 - CDS 25107 - 27788 3523 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 21 13 Op 2 9/0.000 - CDS 27825 - 29756 2083 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 22 13 Op 3 9/0.000 - CDS 29767 - 30882 935 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 23 13 Op 4 6/0.000 - CDS 30879 - 31115 213 ## COG2501 Uncharacterized conserved protein - Prom 31215 - 31274 9.4 - Term 31460 - 31498 5.2 24 13 Op 5 . - CDS 31549 - 32682 1318 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) - Prom 32709 - 32768 6.7 - Term 32782 - 32822 -0.1 25 14 Tu 1 . - CDS 32991 - 34346 1443 ## COG0593 ATPase involved in DNA replication initiation - Prom 34506 - 34565 6.5 + Prom 34952 - 35011 8.4 26 15 Tu 1 . + CDS 35080 - 35232 259 ## PROTEIN SUPPORTED gi|27316887|gb|AAO06062.1|AE016752_95 50S ribosomal protein L34 + Term 35233 - 35266 3.1 + Prom 35253 - 35312 10.0 27 16 Tu 1 . + CDS 35391 - 35738 281 ## COG0594 RNase P protein component + Prom 35798 - 35857 8.2 28 17 Op 1 11/0.000 + CDS 35884 - 37263 1804 ## COG0486 Predicted GTPase 29 17 Op 2 24/0.000 + CDS 37336 - 39213 2338 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 30 17 Op 3 4/0.091 + CDS 39213 - 39932 704 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 31 17 Op 4 . + CDS 39976 - 40815 1044 ## COG1475 Predicted transcriptional regulators + Term 40822 - 40868 7.3 + Prom 41026 - 41085 6.2 32 18 Op 1 . + CDS 41201 - 41575 388 ## SERP0009 hypothetical protein 33 18 Op 2 . + CDS 41591 - 41986 354 ## SERP0010 hypothetical protein 34 18 Op 3 1/0.545 + CDS 41952 - 42491 635 ## COG1309 Transcriptional regulator + Term 42492 - 42539 10.4 + Prom 42496 - 42555 4.0 35 19 Tu 1 . + CDS 42711 - 43280 341 ## COG1396 Predicted transcriptional regulators - Term 43371 - 43428 4.3 36 20 Tu 1 . - CDS 43471 - 44100 549 ## SE2408 hypothetical protein - Prom 44129 - 44188 12.0 + Prom 44113 - 44172 8.5 37 21 Op 1 24/0.000 + CDS 44338 - 45456 1415 ## COG0845 Membrane-fusion protein 38 21 Op 2 36/0.000 + CDS 45453 - 46139 326 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 39 21 Op 3 . + CDS 46207 - 47328 1279 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Term 47483 - 47521 4.0 + Prom 48130 - 48189 7.1 40 22 Tu 1 . + CDS 48324 - 50369 2330 ## COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold + Term 50392 - 50446 8.2 - Term 50391 - 50427 7.5 41 23 Op 1 . - CDS 50449 - 50640 262 ## SERP0019 hypothetical protein 42 23 Op 2 36/0.000 - CDS 50685 - 52565 1675 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 43 23 Op 3 . - CDS 52555 - 53313 302 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) + Prom 53524 - 53583 8.3 44 24 Op 1 . + CDS 53607 - 53987 505 ## SE2399 hypothetical protein 45 24 Op 2 . + CDS 54003 - 54647 543 ## SE2398 hypothetical protein 46 24 Op 3 . + CDS 54713 - 55291 576 ## COG0681 Signal peptidase I + Term 55303 - 55355 4.1 - Term 55292 - 55339 1.0 47 25 Tu 1 . - CDS 55354 - 56718 980 ## COG0477 Permeases of the major facilitator superfamily + Prom 57954 - 58013 6.0 48 26 Tu 1 . + CDS 58064 - 58579 391 ## PROTEIN SUPPORTED gi|228004629|ref|ZP_04051602.1| acetyltransferase, ribosomal protein N-acetylase + Term 58653 - 58702 5.5 - Term 58648 - 58685 4.6 49 27 Tu 1 . - CDS 58701 - 59165 638 ## SE2391 hypothetical protein - Prom 59203 - 59262 4.1 50 28 Tu 1 . - CDS 59644 - 59874 274 ## SE2390 hypothetical protein - Prom 59911 - 59970 9.8 - Term 59962 - 60022 10.1 51 29 Op 1 . - CDS 60026 - 60664 402 ## SE2389 hypothetical protein 52 29 Op 2 . - CDS 60664 - 61506 997 ## COG1131 ABC-type multidrug transport system, ATPase component 53 29 Op 3 . - CDS 61534 - 62268 182 ## SERP0028 hypothetical protein 54 29 Op 4 . - CDS 62265 - 62468 145 ## COG1476 Predicted transcriptional regulators - Prom 62540 - 62599 9.2 + Prom 62666 - 62725 9.9 55 30 Tu 1 . + CDS 62772 - 62954 176 ## SERP0030 hypothetical protein + Term 62963 - 63030 2.1 + Prom 63421 - 63480 3.2 56 31 Op 1 . + CDS 63573 - 63785 148 ## gi|242243287|ref|ZP_04797732.1| hypothetical protein HMPREF0791_1813 57 31 Op 2 . + CDS 63801 - 64985 1765 ## COG0183 Acetyl-CoA acetyltransferase + Term 65027 - 65090 15.2 58 32 Op 1 9/0.000 - CDS 65959 - 68205 2600 ## COG0620 Methionine synthase II (cobalamin-independent) 59 32 Op 2 5/0.091 - CDS 68241 - 70040 1622 ## COG0685 5,10-methylenetetrahydrofolate reductase 60 32 Op 3 5/0.091 - CDS 69994 - 71169 1203 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 61 32 Op 4 . - CDS 71166 - 72269 951 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases - Prom 72429 - 72488 5.1 62 33 Tu 1 . + CDS 72997 - 73839 858 ## COG1475 Predicted transcriptional regulators + Prom 73901 - 73960 6.8 63 34 Op 1 2/0.182 + CDS 73995 - 74870 1032 ## COG0668 Small-conductance mechanosensitive channel 64 34 Op 2 4/0.091 + CDS 74891 - 75106 254 ## COG4481 Uncharacterized protein conserved in bacteria 65 34 Op 3 . + CDS 75106 - 76203 1653 ## COG0012 Predicted GTPase, probable translation factor + Term 76232 - 76280 11.1 66 35 Op 1 . - CDS 76397 - 76588 260 ## SERP0042 hypothetical protein 67 35 Op 2 . - CDS 76662 - 77471 859 ## SE2373 1,4-beta-N-acetylmuramidase - Prom 77524 - 77583 7.7 + Prom 77715 - 77774 6.7 68 36 Op 1 24/0.000 + CDS 77856 - 78152 502 ## PROTEIN SUPPORTED gi|27469290|ref|NP_765927.1| 30S ribosomal protein S6 69 36 Op 2 21/0.000 + CDS 78175 - 78684 627 ## COG0629 Single-stranded DNA-binding protein 70 36 Op 3 . + CDS 78705 - 78971 452 ## PROTEIN SUPPORTED gi|242243301|ref|ZP_04797746.1| 30S ribosomal protein S18 + Term 78991 - 79028 6.2 + Prom 79711 - 79770 6.8 71 37 Op 1 . + CDS 79805 - 80050 176 ## gi|242243303|ref|ZP_04797748.1| hypothetical protein HMPREF0791_1829 72 37 Op 2 . + CDS 80076 - 80666 576 ## COG0693 Putative intracellular protease/amidase + Term 80873 - 80903 -0.3 + Prom 81417 - 81476 7.7 73 38 Tu 1 . + CDS 81502 - 81846 327 ## SSP2361 hypothetical protein + Term 81857 - 81904 6.8 + Prom 81885 - 81944 6.3 74 39 Op 1 . + CDS 82112 - 82504 467 ## COG1846 Transcriptional regulators 75 39 Op 2 . + CDS 82497 - 82856 446 ## SLGD_02042 hypothetical protein + Term 82901 - 82930 -0.3 + Prom 82942 - 83001 8.2 76 40 Op 1 . + CDS 83129 - 83329 126 ## + Prom 83341 - 83400 9.1 77 40 Op 2 . + CDS 83425 - 83841 253 ## SH2076 hypothetical protein 78 41 Tu 1 . - CDS 84687 - 84947 251 ## SERP0048 hypothetical protein - Prom 85025 - 85084 10.1 + Prom 85079 - 85138 11.3 79 42 Tu 1 . + CDS 85169 - 85423 450 ## COG2261 Predicted membrane protein + Term 85525 - 85584 3.9 80 43 Op 1 . + CDS 85896 - 86528 525 ## COG1280 Putative threonine efflux protein 81 43 Op 2 . + CDS 86549 - 87139 337 ## COG0406 Fructose-2,6-bisphosphatase + Term 87276 - 87318 7.9 - Term 87418 - 87447 2.1 82 44 Tu 1 . - CDS 87495 - 87872 370 ## SE2362 hypothetical protein - Prom 87897 - 87956 11.6 - Term 88004 - 88052 15.1 83 45 Tu 1 . - CDS 88089 - 88712 620 ## SE2360 hypothetical protein - Prom 88882 - 88941 7.9 - Term 88889 - 88924 3.4 84 46 Op 1 11/0.000 - CDS 88963 - 90486 422 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 85 46 Op 2 . - CDS 90501 - 91070 685 ## COG0450 Peroxiredoxin - Prom 91207 - 91266 11.7 - Term 91289 - 91336 1.0 86 47 Tu 1 . - CDS 91515 - 92294 807 ## COG3971 2-keto-4-pentenoate hydratase - Prom 92326 - 92385 6.8 + Prom 92344 - 92403 7.8 87 48 Tu 1 . + CDS 92432 - 93187 768 ## COG0778 Nitroreductase + Term 93222 - 93272 7.2 - Term 93182 - 93219 3.0 88 49 Tu 1 . - CDS 93308 - 94696 1339 ## COG1823 Predicted Na+/dicarboxylate symporter - Prom 94856 - 94915 8.1 - Term 94903 - 94953 3.3 89 50 Op 1 . - CDS 95006 - 95908 1080 ## SERP0064 hypothetical protein - Prom 95932 - 95991 2.0 90 50 Op 2 . - CDS 96034 - 96699 651 ## SERP0065 hypothetical protein - Prom 96744 - 96803 7.1 - Term 96752 - 96797 9.1 91 51 Tu 1 . - CDS 96827 - 97234 654 ## SERP0066 hypothetical protein - Prom 97303 - 97362 8.3 92 52 Op 1 7/0.000 + CDS 97831 - 98409 632 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 93 52 Op 2 1/0.545 + CDS 98406 - 99677 402 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 94 52 Op 3 13/0.000 + CDS 99715 - 101181 1904 ## COG0516 IMP dehydrogenase/GMP reductase + Prom 101212 - 101271 6.8 95 52 Op 4 . + CDS 101348 - 102889 2033 ## COG0519 GMP synthase, PP-ATPase domain/subunit + Term 102892 - 102955 7.2 + Prom 102891 - 102950 4.7 96 53 Tu 1 . + CDS 103032 - 103367 306 ## COG3728 Phage terminase, small subunit + Term 103373 - 103410 5.1 + Prom 103653 - 103712 7.5 97 54 Op 1 3/0.182 + CDS 103829 - 104446 711 ## COG4300 Predicted permease, cadmium resistance protein 98 54 Op 2 . + CDS 104465 - 104812 294 ## COG0640 Predicted transcriptional regulators + Term 104999 - 105033 1.3 + Prom 106410 - 106469 7.0 99 55 Tu 1 . + CDS 106572 - 106778 71 ## gi|242243334|ref|ZP_04797779.1| hypothetical protein HMPREF0791_1860 + Term 107008 - 107051 6.2 100 56 Tu 1 . - CDS 106965 - 107153 96 ## gi|242243335|ref|ZP_04797780.1| hypothetical protein HMPREF0791_1861 - Prom 107236 - 107295 7.3 + Prom 107241 - 107300 10.2 101 57 Tu 1 . + CDS 107368 - 108396 1360 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Prom 108617 - 108676 7.0 102 58 Tu 1 . + CDS 108911 - 109294 397 ## SERP0079 hypothetical protein + Term 109314 - 109360 5.0 + Prom 109303 - 109362 7.0 103 59 Tu 1 . + CDS 109465 - 110667 1547 ## COG0523 Putative GTPases (G3E family) - Term 110731 - 110776 8.1 104 60 Tu 1 . - CDS 110906 - 111094 125 ## - Prom 111244 - 111303 5.7 + Prom 112150 - 112209 7.7 105 61 Op 1 3/0.182 + CDS 112236 - 113732 1193 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 106 61 Op 2 1/0.545 + CDS 113750 - 116317 2968 ## COG3002 Uncharacterized protein conserved in bacteria + Term 116332 - 116395 3.0 + Prom 116345 - 116404 6.3 107 62 Tu 1 . + CDS 116430 - 116798 332 ## COG5609 Uncharacterized conserved protein + Term 116811 - 116851 5.0 108 63 Tu 1 . - CDS 116840 - 117088 67 ## SERP0088 hypothetical protein 109 64 Tu 1 . + CDS 117394 - 118014 283 ## COG0671 Membrane-associated phospholipid phosphatase + Term 118048 - 118088 2.3 + Prom 118028 - 118087 2.7 110 65 Op 1 . + CDS 118117 - 118845 721 ## COG1647 Esterase/lipase 111 65 Op 2 . + CDS 118860 - 119102 421 ## SERP0091 hypothetical protein + Prom 119146 - 119205 5.1 112 66 Tu 1 . + CDS 119247 - 120575 1195 ## COG0733 Na+-dependent transporters of the SNF family + Term 120610 - 120653 10.1 - Term 120597 - 120641 4.0 113 67 Tu 1 . - CDS 120754 - 121293 346 ## SERP0093 hypothetical protein - Prom 121405 - 121464 12.6 + Prom 121457 - 121516 10.8 114 68 Op 1 8/0.000 + CDS 121601 - 122509 491 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 115 68 Op 2 1/0.545 + CDS 122502 - 123647 1404 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases + Term 123661 - 123715 10.2 + Prom 123726 - 123785 6.2 116 69 Op 1 32/0.000 + CDS 123894 - 124919 753 ## COG1135 ABC-type metal ion transport system, ATPase component 117 69 Op 2 22/0.000 + CDS 124922 - 125581 617 ## COG2011 ABC-type metal ion transport system, permease component 118 69 Op 3 1/0.545 + CDS 125625 - 126470 1065 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Prom 126824 - 126883 8.5 119 70 Tu 1 . + CDS 126994 - 127968 695 ## COG1388 FOG: LysM repeat + Term 127992 - 128061 18.1 - Term 127989 - 128042 10.3 120 71 Tu 1 . - CDS 128095 - 129600 1050 ## COG0438 Glycosyltransferase - Prom 129657 - 129716 12.6 - Term 129862 - 129905 -0.6 121 72 Tu 1 . - CDS 129974 - 130252 411 ## SERP0102 hypothetical protein - Prom 130372 - 130431 8.1 + Prom 130262 - 130321 6.2 122 73 Tu 1 . + CDS 130440 - 130826 502 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 123 74 Op 1 3/0.182 - CDS 131338 - 132123 557 ## COG5438 Predicted multitransmembrane protein 124 74 Op 2 1/0.545 - CDS 132120 - 133121 809 ## COG5438 Predicted multitransmembrane protein - Prom 133270 - 133329 7.1 - Term 133142 - 133180 -0.3 125 75 Tu 1 . - CDS 133369 - 134250 680 ## COG0583 Transcriptional regulator - Prom 134345 - 134404 10.0 + Prom 134328 - 134387 8.9 126 76 Op 1 21/0.000 + CDS 134442 - 138938 4527 ## COG0069 Glutamate synthase domain 2 127 76 Op 2 . + CDS 138956 - 140419 1541 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases + Term 140524 - 140590 30.0 + TRNA 140482 - 140574 74.1 # Ser TGA 0 0 + Prom 141620 - 141679 10.7 128 77 Op 1 1/0.545 + CDS 141713 - 142267 595 ## COG3153 Predicted acetyltransferase 129 77 Op 2 30/0.000 + CDS 142359 - 144041 1425 ## COG2812 DNA polymerase III, gamma/tau subunits + Prom 144046 - 144105 4.3 130 77 Op 3 23/0.000 + CDS 144130 - 144447 191 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 131 77 Op 4 . + CDS 144454 - 145050 579 ## COG0353 Recombinational DNA repair protein (RecF pathway) + Term 145070 - 145110 3.0 Predicted protein(s) >gi|224999867|gb|ACJC01000133.1| GENE 1 2 - 212 130 70 aa, chain - ## HITS:1 COG:no KEGG:SACOL0027 NR:ns ## KEGG: SACOL0027 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_COL # Pathway: not_defined # 1 70 1 70 79 101 100.0 7e-21 MSDNLSLFIDYINDNIIYGSEIKREKLENLFNQFAIKNVEKNIVYDELKSLDITIIESQD SYKNKLKRLF >gi|224999867|gb|ACJC01000133.1| GENE 2 627 - 1883 1224 418 aa, chain - ## HITS:1 COG:no KEGG:USA300HOU_0025 NR:ns ## KEGG: USA300HOU_0025 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 418 14 431 431 732 100.0 0 MIDNFMQVLKLIKEKRTNNVVKKSDWDKGDLYKTLVHDKLPKQLKVHIKEDKYSVVGKVA TGNYSKVPWISIYDENITKETKDGYYLVYLFHPEGEGIYLSLNQGWSKISDMFPRDKNAA KQRALTLSSELNKYITSNEFNTGRFYYAENKDSSYDLKNDYPSGYSHGSIRFKYYDLNEG FTEEDMLEDLKKFLELFNELASKVTKTSYDSLVNSIDEIQEDSEIEEIRTAQKDKTLKEV EAPKGIIPKYKKGVSKTTKNDSEIEKSNKENKLTGKVGEKLALNYFNELIDNKIDEDKKE QFRNILNDNPGSQHGHGYDLVAFDPTNTDKAVEKFIEIKTSTSSSIEEPFFMSLNEMFAM KEYKQKYLILRIFNVSGKEPQFYFIDPYANYSEFKDVDDLIDKVFNVEAIQYKVFGEK >gi|224999867|gb|ACJC01000133.1| GENE 3 2205 - 2684 413 159 aa, chain - ## HITS:1 COG:SA0023 KEGG:ns NR:ns ## COG: SA0023 COG1576 # Protein_GI_number: 15925729 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 159 1 159 159 262 90.0 2e-70 MKITILSVGKLKEKYWKQAIAEYEKRLGPYTKIELIEVPDEKAPENMSDKEIEQVKEKEG QRLLNKIKSQSTVITLEIKGKMLSSEGLAKELQTRMTQGQSDFTFVIGGSNGLHQDVLQR SNYALSFSNMTFPHQMMRVILIEQIYRAFKIMRGEAYHK >gi|224999867|gb|ACJC01000133.1| GENE 4 3735 - 4517 650 260 aa, chain - ## HITS:1 COG:SA0021 KEGG:ns NR:ns ## COG: SA0021 COG1235 # Protein_GI_number: 15925727 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Staphylococcus aureus N315 # 1 260 7 266 266 491 92.0 1e-139 MSVLASGSTGNATYVESEKGSLLVDVGLTGKKMEELFSQIDRNIKDLNGILVTHEHIDHI KGLGVLARKYKLPIYANENTWKAIEKKDSRIPMDQKFIFNPYETKSLAGFDIESFNVSHD AIDPQFYIFHNNYKKFTMITDTGYVSDRMKGMIQGSDVFMFESNHDVDMLRMCRYPWKTK QRILSDMGHVSNEDAGLAMSDVITGNTKRIYLSHLSQDNNMKDLARMSVGQVLNEHDIDT EKEVLLCDTDKAQATPIYTL >gi|224999867|gb|ACJC01000133.1| GENE 5 5147 - 5938 670 263 aa, chain - ## HITS:1 COG:SA0020 KEGG:ns NR:ns ## COG: SA0020 COG4853 # Protein_GI_number: 15925726 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 263 1 262 262 298 64.0 9e-81 MNWKLTKTLFIFVFILVNIFLVIVYIDKVNKSQVNDSEKVNEVNFQQEEIDVPKDVLNQN VKDTELEQITARSKNFSSYAKDHSSMQTSDSDKTLEGDIDKGVQVSDKNLQDIKEYIAKK IFNGKEYQLSDLTKDKVTYEQTYKDYPIMNNSKARLTFNLSDGKATSYKQTAMDDIQVAK GSNSTKKQVITPRKAIEALYYNRYLKQNDQVLDARLGYYSVVKETNVQLLQPNWEIKVKH KGKDEVQTYYVEATNHNPKVIDY >gi|224999867|gb|ACJC01000133.1| GENE 6 5939 - 7276 1038 445 aa, chain - ## HITS:1 COG:SA0019 KEGG:ns NR:ns ## COG: SA0019 COG4863 # Protein_GI_number: 15925725 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 445 10 453 453 610 70.0 1e-174 MNNKEHTKSIILVLLVLMSIVLTYMVWNFSPDLSNIDNTDNSKSDKPKPLTKPMTAEMEG TITPFQIVHSRDEKSQGTVASGAVLDKMIQPLKNQEVKSVSHLKREHNLVIPELSNDFIV LDFTYDLPLSTYLSQVLDIDAKVPNNFNFDRLLIDQDHNNHVVLYAISKDRHEVVKLKTT MKGNNVDKAFKSIEPDMQPYTEIITNKDTIDKATHVFAPSKPKDLKTYRMVFNTISVERM NSILFDDSTIVRSSQSGTTTYNNNTGVANYNDKDEMYHYKNLSEDAKSSSNMQETIPGTY EFINSHGGFLNEDYRLFKTDNRTGKLTYQRFLNGHPTFNKHNFNEIQVTWGDKGVYDYQR SLLKTDVTLNSEESKSVPTVESVRSALANHPDIDFEKVTNIAIGYDMDDKANNEDIEVQR NCELIPRWFVEYDGNWYAYKDGRLE >gi|224999867|gb|ACJC01000133.1| GENE 7 7269 - 9101 1822 610 aa, chain - ## HITS:1 COG:SA0018 KEGG:ns NR:ns ## COG: SA0018 COG5002 # Protein_GI_number: 15925724 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 610 1 608 608 1054 91.0 0 MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNSLEKELLDNFKKNITQYAKQLDVNI EKVYKDKDKGSVNAQKDIQDLLNEYANRQEIGEIRFIDKDQIIMATTKQSNRGLINQKVN DGSVQKALSLGQTNDHMVLKDYGSGKERVWVYNIPVKVDKQTIGDIYIESKINDVYNQLN NINQIFIVGTAISLFITVILGFFIARTITKPITDMRNQTVEMSKGNYTQRVKIYGNDEIG ELALAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGILATDRRGRVRIANDMALKMLGL AKEDVIGYYMLGVLNLENEFSLEEIQENSDSFLLDINEEEGIIARVNFSTIVQETGFVTG YIAVLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWQDKELAPSFLSV TREETERMIRLVNDLLQLSKMDNESDQITKEIIDFNMFINKIINRHEMAAKDTTFVREIP QQTIFAEIDPDKMTQVFDNVITNAMKYSRGEKRVEFHVKQNALYNRMTIRIKDNGIGIPI NKVDKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPC EIIEDGDWDE >gi|224999867|gb|ACJC01000133.1| GENE 8 9114 - 9815 846 233 aa, chain - ## HITS:1 COG:SA0017 KEGG:ns NR:ns ## COG: SA0017 COG0745 # Protein_GI_number: 15925723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 233 3 235 235 437 97.0 1e-122 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD GMEVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH YSQPAQEVSGATNEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTRE HLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHD >gi|224999867|gb|ACJC01000133.1| GENE 9 10862 - 12145 1581 427 aa, chain - ## HITS:1 COG:SA0016 KEGG:ns NR:ns ## COG: SA0016 COG0104 # Protein_GI_number: 15925722 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Staphylococcus aureus N315 # 1 427 1 427 427 819 92.0 0 MSSIVVVGTQWGDEGKGKITDFLAEQADVIARFSGGNNAGHTIQFGGETYKLHLVPSGIF YKDKLAVIGNGVVVDPVALLKELDGLNERGISTDNLRISNRAQVILPYHLAQDEYEERRR GDNKIGTTKKGIGPAYVDKAQRIGIRMADLLEKETFERRLKENIEYKNAYFKGMFNETCP TFDEIFDEYYAAGQRLKDYVTDTAKILDDANVADEKVLFEGAQGVMLDIDHGTYPFVTSS NPVAGNVTVGTGVGPTSVSKVIGVCKSYTSRVGDGPFPTELFDEDGHHIREVGREYGTTT GRPRRVGWFDSVVLRHSRRVSGITDLSINSIDVLTGLDTVKICTAYELDGEKITEYPANL DQLRRCKPIFEELPGWTEDITGCRSLDELPKNARNYLERISELCGVHISIFSVGPDREQT NLLEQLW >gi|224999867|gb|ACJC01000133.1| GENE 10 12424 - 13824 1632 466 aa, chain - ## HITS:1 COG:SA0015 KEGG:ns NR:ns ## COG: SA0015 COG0305 # Protein_GI_number: 15925721 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Staphylococcus aureus N315 # 1 465 1 465 466 840 96.0 0 MDGMYEQNQMPHSNEAEQSVLGAIIIDPELINTTQEVLLPESFYRGAHQHIFRAMMHLNE DNKEIDVVTLMDQLSSEGSLNEAGGPQYLAELSTSVPTTRNVQYYTDIVFKHALKRKLIQ TADSIANDGYNDELELDTILSDAERRILELSSTRESDGFKDIRDVLGQVYETAEELDQNS GQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDMYTVGIFS LEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWSRFTIAVGKLSRTKIFIDDTPGIRIN DLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRFSDNRQQEVSEISRTLKAIARELECPVI ALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGEGDEDDDDAGFEP QTNDDNGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMS >gi|224999867|gb|ACJC01000133.1| GENE 11 13995 - 14441 749 148 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|242243241|ref|ZP_04797686.1| 50S ribosomal protein L9 [Staphylococcus epidermidis W23144] # 1 148 1 148 148 293 100 4e-78 MKVIFTQDVKGKGKKGEVKDVPVGYANNFLLKNKYAVEATPGNLKQLEQQNKRAAADRQQ EIDDAKALKEQLKDIEVEVSAKTGEGGKLFGSISTKQIAEALKKQHDIKIDKRKMDLPHG IHALGYTNVPVKLDKEVEGTIRVHTVEQ >gi|224999867|gb|ACJC01000133.1| GENE 12 14438 - 16405 902 655 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|162447066|ref|YP_001620198.1| bipartite protein: signaling protein and ribosomal protein L9 [Acholeplasma laidlawii PG-8A] # 10 645 8 659 818 352 31 1e-122 MNRQSTKKALLIPFIIMVFTAIALVAVWFIFNQLVAGIATAILIVMIIISGVLLRKAFLK MDNYVDDLSGHISASSNKAIKHLPIGMIVLDEDNHIEWMNQFMTDHIETNVISENVNEVF PNILKQLEKVQEVEIENNNYYYHVRYSENEHCLYFFDMTETERTNELYEDSKPIIATIFL DNYDEITQNMNDTQRSEINSMVTRVISRWAQDYNIYFKRYNSDQFVAYFNQKILAELEDS NFEILSQLREKSAGYRAQLTLSIGVGEGTENLIDLGELSQSGLDLALGRGGDQVAIKNMN GNVRFYGGKTDPMEKRTRVRARVISHALKDILTEGDKVIVMGHKRPDLDAIGAAIGVSRF ASMNNLEAFIVLNDSDIDPTLRRVMDEIDKKPELKERFVTSDEAWDMMTSKTTVVVVDTH KPEMVLDENVLNKANRKVVIDHHRRGESFISNPLLVYMEPYASSTAELVTELLEYQPTEQ RLTRLESTVMYAGIIVDTRNFTLRTGSRTFDAASYLRAHGADTILTQHFLKDDVDTYINR SELIRTVKIQDQGVAIAHGSDDKIYHPVTVAQAADELLSLEGIEASYVVAKREDNLIGIS ARSLGSINVQLTMEALGGGGHLTNAATQIKGATIDEAIEQLQQAITEQMSRSEDA >gi|224999867|gb|ACJC01000133.1| GENE 13 16434 - 17360 804 308 aa, chain - ## HITS:1 COG:SA0012 KEGG:ns NR:ns ## COG: SA0012 COG4241 # Protein_GI_number: 15925718 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 307 20 326 331 330 69.0 2e-90 MGVAYVFSKIQPKATILAIISLLVVALVTHVLPVLGLILCLFATIPGIVLWNRSIQSFGI SALVTVVLTTLLGNTFVLSMMVLILLLSAIIGQLLKERTSKERILYISTASLSLVTLIGW MLLQTFDKIPTAAVLIKPFKNAMHEAFLTSGIDSNYRQILEESFRQMTVQLPSFLIIVIF IFVLINLIITFPILRKFKVATPIFKPLFAWQMSRNLLWFYLIVLICVMVASEPSTFQSIV LNFDVVLSLVMYIQGLSVIHFFGKAKRWPNFATILVMVVGTLLTPATHIVGLLGVIDLCI NLKKIIKK >gi|224999867|gb|ACJC01000133.1| GENE 14 17588 - 18556 1082 322 aa, chain - ## HITS:1 COG:SA0011 KEGG:ns NR:ns ## COG: SA0011 COG2021 # Protein_GI_number: 15925717 # Func_class: E Amino acid transport and metabolism # Function: Homoserine acetyltransferase # Organism: Staphylococcus aureus N315 # 1 322 8 329 329 577 86.0 1e-165 MTNYTVNTLELGEFKTESGETIDHLRLRYEHVGLPGQPLVVVCHALTGNHLTYGTDAQPG WWREIIDGGYIPVHDYQFLTFNVIGSPFGSSSKLNDDNFPEHLTLRDIVRAIELGIQALE FKKINILIGGSLGGMQAMELLYNRQFEVEKAIILAATDKTSSYSRAFNEIARQAIHIGGK EGLSIARQLGFLTYRSSKSYDQRFTPDEVVSYQQHQGDKFKEYFDLNCYLTLLDVLDSHH LDRGRDDVDEVFQSLETKVLTMGFIDDLLYPDDQVRALGERFKYHRHFFVPDNVGHDGFL LNFNDWAPNLYHFLNLKQFRRK >gi|224999867|gb|ACJC01000133.1| GENE 15 18846 - 19175 440 109 aa, chain - ## HITS:1 COG:SAS001 KEGG:ns NR:ns ## COG: SAS001 COG4392 # Protein_GI_number: 15925716 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 109 1 109 109 88 64.0 3e-18 MTTDLHTLVLIVLCGVVTLLVRVIPFVMISRVNLPAIVIKWLSFIPITLFTALIIDGVIQ QHDHTFGYTLNLPYIIAIVPTVMLAIFTRSLTVTILGGIFVIACLRLIF >gi|224999867|gb|ACJC01000133.1| GENE 16 19172 - 19864 558 230 aa, chain - ## HITS:1 COG:SA0010 KEGG:ns NR:ns ## COG: SA0010 COG1296 # Protein_GI_number: 15925715 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Staphylococcus aureus N315 # 2 230 3 231 231 333 81.0 2e-91 MTHLTFKQGVKECIPTLLGYAGVGLSFGIVAASQNFSVLEIILLCLIIYAGAAQFIICTL VIAGTPISAIVLTTLIVNSRMFLLSMTLAPNYKQYGFWNRVGLGTLLTDETFGVAITPYV KGEKINDRWLHGLNITAYLFWTVSCVIGAIFGEYISNPDALGLDFAITAMFIFLCISQFE GIKKSRLRIYIVLIVCVIVMMLLLSSILPSYVAILIAAIVAALLGVVMEK >gi|224999867|gb|ACJC01000133.1| GENE 17 20229 - 21233 1177 334 aa, chain + ## HITS:1 COG:no KEGG:SERP2544 NR:ns ## KEGG: SERP2544 # Name: hlb # Def: beta-hemolysin # Organism: S.epidermidis_RP62A # Pathway: Inositol phosphate metabolism [PATH:ser00562]; Glycerophospholipid metabolism [PATH:ser00564]; Metabolic pathways [PATH:ser01100] # 1 334 1 334 334 617 98.0 1e-175 MKRGVTILNWQRKCILTTLLVLSSLFLVFSTITYASERDYKDSLKITTHNVYFLPTAIYP NWGQSQRADLISKADYIQNQDVVILNELFDKKASKRLLARLHSQYPYQTPIVGKGTEGWQ NTSGTYRKIKKVSGGVGIVSKWPIVQQEQHIYKKGCGADMAGNKGFAYIKINKNGKYHHI IGTHLQAEDSTCFKGKDKDIRQSQMSEIKQFIKDKNIPKNEPVYIGGDLNVIKDSDEYEQ MANNLNVSLPTQFDGNAYSWDTSSNSIAKYNYPKLEPQHLDYILLDRDHAQPSSWHNDTH RVKSPEWSVKSWGKTYKYNDYSDHYPLSGYASNE >gi|224999867|gb|ACJC01000133.1| GENE 18 21762 - 23048 1812 428 aa, chain - ## HITS:1 COG:SA0009 KEGG:ns NR:ns ## COG: SA0009 COG0172 # Protein_GI_number: 15925714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 428 1 428 428 760 88.0 0 MLDIRLFRNEPEKVKSKIELRGDDPKVVDQVLELDEQRRELISKTEEMKAKRNKVSEEIA QKKRNKEDADDVIAEMRHLGDEIKDIDNQLNEVDNKIRDILIRIPNLINEDVPQGASDEE NVEVKKWGTPRDFEFEPKAHWDLVEELKMADFERAAKVSGARFVYLTKDGALLERALMNY MLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFY RDEIIQPGVLPELFTAQTACFRSEAGSAGRDTRGLIRLHQFDKVEMVRIVQPEDSWNALE EMTQNAEAILEELGLPYRRVILCTGDIGFSASKTYDLEVWLPSYNDYKEISSCSNCTDFQ ARRANIRFKRDAASKPELVHTLNGSGLAVGRTFAAIVENYQNEDGTLTIPEALVPFMGGK TKIEKPIK >gi|224999867|gb|ACJC01000133.1| GENE 19 23876 - 24709 301 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225093729|ref|YP_002662469.1| ribosomal protein S15 [gamma proteobacterium HTCC5015] # 1 251 220 472 497 120 30 4e-26 MGGYVVMKTLDSVNIPIRKDETHKGDYGKILLIGGSANMGGAIMLAARACVYSGSGLITV ATHPNNHAALHSRCPEAMVIDINDTKMLTKMIEATDSILIGPGLGVDFKGNNAITFLLQN IQPHQNLIVDGDAITIFSKLKPQIPTCRVIFTPHQKEWERLSGIPIEEQTYERNLEAVER IGATVVLKQHGTEIYFCNDDVYKLPIGTPAMATGGMGDTLAGMITSFVGQFDNFKEAVTS ATYMHSFIGEKLSDTMYVVPPSRLISEIPYVMKQLEG >gi|224999867|gb|ACJC01000133.1| GENE 20 25107 - 27788 3523 893 aa, chain - ## HITS:1 COG:SA0006 KEGG:ns NR:ns ## COG: SA0006 COG0188 # Protein_GI_number: 15925711 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Staphylococcus aureus N315 # 1 890 1 889 889 1457 87.0 0 MAELPQSRINERNITSEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTP DKPYKKSARIVGDVMGKYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAA MRYTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMA TNIPPHNLTEVIDGVLSLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGS IQMRSRAEIEERGGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRT GVRVVIDVRKDANASVILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQK TVVRRRTEYNLKKARDRAHILEGLRIALDHIDEIITTIRESDTDKIAMASLQERFKLTER QAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILADEEVLLQLVRDELTEIKERF GDERRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNT LDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETIS TMIAVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNGKIAINFKEDDELIAVRLTTGN EDILIGTAHASLIRFSESTLRPLGRTAAGVKGISLREGDTVVGLDVADSESEDEVLVVTE NGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNAGVIIRLDV HDISQNGRAAQGVRLMKLGDGQFVSTVAKVKEEDDNEENVDEAQQTTSAEKADVEEVVDD QTPGNAIHTEGDAETESVESPENDDRIDIRQDFMDRVNEDIESASDNEEDSDE >gi|224999867|gb|ACJC01000133.1| GENE 21 27825 - 29756 2083 643 aa, chain - ## HITS:1 COG:SA0005 KEGG:ns NR:ns ## COG: SA0005 COG0187 # Protein_GI_number: 15925710 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Staphylococcus aureus N315 # 1 643 1 644 644 1145 93.0 0 MVNTLSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEAL AGYASHIEVIIEKDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVS GGLHGVGSSVVNALSQDLEVYVHRNGTIYHQAYKQGVPQFDLKEIGDTDKTGTAIRFKAD KEIFTETTVYNYETLQKRIRELAFLNKGIQITLKDEREEEVREDSYHYEGGIKSYVDLLN ENKEPLHDEPIYIHQSKDDIEVEIALQYNSGYATNLLTYANNIHTYEGGTHEDGFKRALT RVLNSYGTQSKIIKEDKDRLSGEDTREGLTAVVSIKHGDPQFEGQTKTKLGNSEVRQVVD RLFSEHFERFLYENPSVGRIIVEKGIMASRARVAAKKAREVTRRKSALDVSSLPGKLADC SSKNPEESEIFLVEGDSAGGSTKSGRDSRTQAILPLRGKILNVEKARLDRILNNNEIRQM ITAFGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQ PPLYKLTQGKQKYYVFNDRELDKLKQELNPSPKWSIARYKGLGEMNADQLWETTMNPEHR SMLQVRLEDAIDADQTFEMLMGDVVENRRQFIEDNAVYANLDF >gi|224999867|gb|ACJC01000133.1| GENE 22 29767 - 30882 935 371 aa, chain - ## HITS:1 COG:SA0004 KEGG:ns NR:ns ## COG: SA0004 COG1195 # Protein_GI_number: 15925709 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 371 1 370 370 613 87.0 1e-175 MKLNTLQLENYRNYEQVTLDCHPEVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL IRFNSDYAKIEGELSYRHGTMPLTMFITKKGKQVKVNHLEQSRLTQYIGHLNVVLFAPED LNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQIGQKTDTTMLEV LNQQFAEYALKVTLRREHFIKELETLAQPIHAGITNHRETLTLDYVPSLKLSNYEANQSE LIEEVLALLNDNLQREKERGVCLYGPHRDDLSFNVNGMDAQTYGSQGQQRTTALSIKLAE IELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVEGIDHEIMNNAK LYRISQGEILK >gi|224999867|gb|ACJC01000133.1| GENE 23 30879 - 31115 213 78 aa, chain - ## HITS:1 COG:SA0003 KEGG:ns NR:ns ## COG: SA0003 COG2501 # Protein_GI_number: 15925708 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 78 4 81 81 122 87.0 2e-28 MVQEVVVEGNITLGQFLKTEGIIESGGQAKWFLQDFEVLINGQRETRRGKKLEHNDRIDI TDIPEDTGSFLIIHQGEQ >gi|224999867|gb|ACJC01000133.1| GENE 24 31549 - 32682 1318 377 aa, chain - ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 377 1 377 377 663 93.0 0 MMEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPK QVDGEEIVEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNEQFQTLITSGHSEFNLSGLD PDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNELICTAT DSHRLAVRKLQLEDESENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRVGNINF ISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTGNELVE LSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILK PKDDDSVTQLILPIRTY >gi|224999867|gb|ACJC01000133.1| GENE 25 32991 - 34346 1443 451 aa, chain - ## HITS:1 COG:SA0001 KEGG:ns NR:ns ## COG: SA0001 COG0593 # Protein_GI_number: 15925706 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Staphylococcus aureus N315 # 1 450 1 452 453 733 84.0 0 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI MQAIIYDVIGYEVKPHFISEDELASYNNVNTQEVQEPQIQNSSIDDKTWGKEQFNMHNTF DTFVIGPGNRFPHAASLAVAEAPAEAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKV IYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQNKEQTQEEFFHTFNELH QNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLDIP PEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQSPKSKKITIQ DIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTV IHAHEKIANDIKSDPTFKQEVENLEKEIRNQ >gi|224999867|gb|ACJC01000133.1| GENE 26 35080 - 35232 259 50 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27316887|gb|AAO06062.1|AE016752_95 50S ribosomal protein L34 [Staphylococcus epidermidis ATCC 12228] # 1 50 1 50 50 104 100 3e-21 MEVFCMVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA >gi|224999867|gb|ACJC01000133.1| GENE 27 35391 - 35738 281 115 aa, chain + ## HITS:1 COG:SA2502 KEGG:ns NR:ns ## COG: SA2502 COG0594 # Protein_GI_number: 15928298 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Staphylococcus aureus N315 # 1 115 1 115 115 150 83.0 6e-37 MEKAYRIKRNSDFQAIYKNGKSVANRQFVVYTYKNRDLKHFRLGISVSKKLGNAVTRNRI KRAIRENFKVHKQNIIAKDIIVIARQPAKDMNTLEIQSSLEHVLKIAKVFNKKIK >gi|224999867|gb|ACJC01000133.1| GENE 28 35884 - 37263 1804 459 aa, chain + ## HITS:1 COG:SA2501 KEGG:ns NR:ns ## COG: SA2501 COG0486 # Protein_GI_number: 15928297 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Staphylococcus aureus N315 # 1 459 1 459 459 749 90.0 0 MDFDTITSISTPMGEGAIGIVRLSGPQAIEIGDILYKGKKKLSEVETHTINYGHIIDPET NETVEEVMVSVLRAPKTFTREDIIEINCHGGILTINRILELTMTYGARMAEPGEYTKRAF LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKKQRQSILEILAQVEVNIDY PEYDDVEDATTDFLLEQSKRIKEEINRLLETGAQGKIMREGLSTVIVGRPNVGKSSMLNN LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE ADLILFVLNNNEPLTEDDQTLFEVIKNEDVIVIINKTDLEQRLDVSELREMIGDMPLIQT SMLKQEGIDELEIQIKDLFFGGEVQNQDMTYVSNSRHISLLKQARQSIQDAIDAAESGIP MDMVQIDLTRTWEILGEIIGESASDELIDQLFSQFCLGK >gi|224999867|gb|ACJC01000133.1| GENE 29 37336 - 39213 2338 625 aa, chain + ## HITS:1 COG:SA2500 KEGG:ns NR:ns ## COG: SA2500 COG0445 # Protein_GI_number: 15928296 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Staphylococcus aureus N315 # 1 623 1 623 625 1153 93.0 0 MVQEYDVVVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE IDALGGQMAKTIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVLENEDNLDIMQ GMVDELIIEDNEVKGVRTNIGTEYRSKAVIITTGTFLRGEIILGNLKYSSGPNHQLPSVT LADNLRKLGFDIVRFKTGTPPRVNARTIDYSKTEIQPGDDIGRAFSFETTEFILDQLPCW LTYTNGDTHQVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN TNEVYVQGLSTSLPEHVQRQMLETIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKAIK NLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTN EPYRLLTSRAEYRLLLRHDNADLRLTDMGYELGLISEERYAKFNEKRQQIKDEIQRLTDV RIKPNEHTQAIIEAKGGSRLKDGILAIDLLRRPEMNYETILEILEESHQLPEAVEEQVEI QTKYEGYINKSLQQVEKVKRMEAKKIPEDLDYSKVDSLASEAREKLAEVKPLNIAQASRI SGVNPADISILLVYLEQGKLQRVKQ >gi|224999867|gb|ACJC01000133.1| GENE 30 39213 - 39932 704 239 aa, chain + ## HITS:1 COG:SA2499 KEGG:ns NR:ns ## COG: SA2499 COG0357 # Protein_GI_number: 15928295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Staphylococcus aureus N315 # 1 238 1 238 239 410 80.0 1e-114 MNIEWLSEKLSEQGIELSNTQKEQFQKYYQLLVEWNKKMNLTSITDEHDVYLKHFYDSIA PSFYYDFNGQLSLCDIGAGAGFPSIPLKIVYPELKVTIVDSLNKRIQFLNHLAAELGLED VSFVHDRAETYGKGVYRESYDIVTARAVARLTVLSELCLPLVKKGGQFLALKSSKGKEEL QEATFAINILGGNVKDTYTFELPENAGERQMIIIDKRRQTSKKYPRKPGTPNKSPLVES >gi|224999867|gb|ACJC01000133.1| GENE 31 39976 - 40815 1044 279 aa, chain + ## HITS:1 COG:SA2498 KEGG:ns NR:ns ## COG: SA2498 COG1475 # Protein_GI_number: 15928294 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 279 1 279 279 390 85.0 1e-108 MKKPFSKLFGLKNKDDIIGYTEEERNNNVESIHIERIVPNRYQPRQVFEPNKIKELAESI EEHGLLQPIVVRPIEEDMFEIIAGERRFRALQSLHKPQVDVIVRDMDDEETAVVALIENI QRENLSVVEEAEAYKKLLEIGETTQNELAKSLGKSQSFIANKLRLLKLAPNVIKRLREGK ITERHARAVLVLPDETQEELIEQVISQKLNVKQTEDRVRQKTGPEKVKAQTFQFSQDVTQ AKEELGKSIETIEKSGIRVEQKDKEHEDYYEIKIKIYKK >gi|224999867|gb|ACJC01000133.1| GENE 32 41201 - 41575 388 124 aa, chain + ## HITS:1 COG:no KEGG:SERP0009 NR:ns ## KEGG: SERP0009 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 6 124 1 119 119 164 99.0 8e-40 MRRVIVFGISISSAILHFVIGGFAVALASIMADKVGGKLGGIIATMPAVYLAAIIALAID HKGQQLIQMSIHLSTGAIVGIVSCIVTVFFTSIFIGKKNYRSGTVFAILCWFVISVAIFL VRHI >gi|224999867|gb|ACJC01000133.1| GENE 33 41591 - 41986 354 131 aa, chain + ## HITS:1 COG:no KEGG:SERP0010 NR:ns ## KEGG: SERP0010 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 131 1 131 131 231 100.0 8e-60 MKLAIIKFSVGGLAVLISYIVSVVLPWKEFGGIFATFPAVFLVSMCITGMQFGNEVAMHV SRGAVFGMIGVLCSILATWGLLQATHMWLLSIIGGFVAWFVSALIIFEIVEFIAHKRRDK HGWKTKRSNNQ >gi|224999867|gb|ACJC01000133.1| GENE 34 41952 - 42491 635 179 aa, chain + ## HITS:1 COG:BS_ydeS KEGG:ns NR:ns ## COG: BS_ydeS COG1309 # Protein_GI_number: 16077599 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus subtilis # 3 176 6 187 198 78 26.0 6e-15 MAGRPKDPTINKKIYTEIQRLLETTHFRDITIDQISENTGISKATIYRRWKDKSSIIMSA FIEQSQYIVIHNQDNLYDDLFQFLVKIKDIYKTKLGSAVIEILISHQQMEARETFMTNYF NHNRKVLKEIVRKHIKEEEQDLFIDLIFSPIYFNILIKPETLDENYIKKMLNQVLRIYH >gi|224999867|gb|ACJC01000133.1| GENE 35 42711 - 43280 341 189 aa, chain + ## HITS:1 COG:SA2495 KEGG:ns NR:ns ## COG: SA2495 COG1396 # Protein_GI_number: 15928290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 189 1 189 189 187 51.0 9e-48 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE LVEDDLKNVQIKNIKKELDFWTWMMIIPMVLGSVLIGPMIHYFHWLGIGITYLVFLIGII ASTKLEKIKIKNDIETYDRILAFINGKDPKEVQKSKFRYIWTSLISFIFFVGVIIGISYL SIILTDYFL >gi|224999867|gb|ACJC01000133.1| GENE 36 43471 - 44100 549 209 aa, chain - ## HITS:1 COG:no KEGG:SE2408 NR:ns ## KEGG: SE2408 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 208 1 208 209 311 97.0 1e-83 MSTQELKENDIQNSSIPFVNHFNKLRHQPKWILKSIIMIVLAIISAFITYNTSNDLLDNQ SIANSQMDENMFRMTTTIGAFIGTIFSVVVVFLIFLVISKIFKSDAKASSLFSAALSYSI IILGFTTIISLIQIVFGLKITDYKLDSLNIFSKDNKTLMAFSLTNLLKAFLTGVVYYSTS RLSKKTSMILGIVALIILIGSGMIGGMNS >gi|224999867|gb|ACJC01000133.1| GENE 37 44338 - 45456 1415 372 aa, chain + ## HITS:1 COG:SA0191 KEGG:ns NR:ns ## COG: SA0191 COG0845 # Protein_GI_number: 15925901 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane-fusion protein # Organism: Staphylococcus aureus N315 # 1 372 1 370 370 290 48.0 2e-78 MNKKLLWSIIGIVIIVVLIIAAFILKQVNGSGSKDSKAYDTYTVRKETPISLEGKASPES VKTYNNNQSVGNFLSVSVQDGQTVKQGERIINYDTNGNKRQQLVNKVNQAQSQVNDDYQK VNQSPNNHQLQVKLTQDQSALNEAQQSLSQYDRQLNDSMNASFDGKINIKNDSDVGEGQP ILQLISSNPQINATITEFDINKIKEGDEVDVTVNSTGKKGKGKILKIDELPTSYDTSDDS AASSAQSGAQGDSEEGTEMTASNPTINQPTGGKSGETSKYKVIIGDLDIPVRSGFSMDAK IPLKTKKLPNNVLTKDNNVFVVDKNNKVHKREIKIERNNGEIIVKKGLKSGDKVIKKPKG NLNDGEKVEVSS >gi|224999867|gb|ACJC01000133.1| GENE 38 45453 - 46139 326 228 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 222 1 220 245 130 36 4e-29 MIELRKINRHFKNGNESNHILKDIDIHIDEGEFIAIMGPSGSGKSTLINILGFIDRGYEG EYFFNNENYQKSSDNKLAEIRNHTVGFVFQNFKLIQNNTILENVSIPLIYNGLSNKARKS KVLDGLHDVGLKGKENLLPNKLSGGQQQRVAIARAIINDPKFIIADEPTGALDSKTSQDI MELFVKLNKEQNTTIIMVTHDREVAEKADRIIHILDGRVQEEEVLTRE >gi|224999867|gb|ACJC01000133.1| GENE 39 46207 - 47328 1279 373 aa, chain + ## HITS:1 COG:SA0193 KEGG:ns NR:ns ## COG: SA0193 COG0577 # Protein_GI_number: 15925903 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 15 373 40 392 392 371 56.0 1e-102 MIGIIIGIASVITIMSLGNGFKKSTTEQFNNAGAGKNQASISYMTENMDAPKNNPFKQED MSVVEQVNGVKSAKVKEDKDSTYSVKITNTHGSSDASLKKVDKLTDVDEGKGFTNDDNEV LEKVAVIDKKIAKKVFNNHAMGQSIYVNGEGFKVVGVSDSSEVDESGMPIESLIQIPTKT FNKYMGNLTQGMPQLLVTVEKGSDKKDVGKKVEKALNKKGTGVSEGQYSYEDNEAVMKTI GSVLDTITYFVAAVAGISLFIAGIGVMNVMYISVTERTEEIAIRRAFGAKGRDIEIQFLV ESVVLCLIGGIIGLILGIIIATLIDLVTPEMVKSSVSLGSVILAVGVSTLIGIIFGWIPA RSASKKELIDIIK >gi|224999867|gb|ACJC01000133.1| GENE 40 48324 - 50369 2330 681 aa, chain + ## HITS:1 COG:SA0309_2 KEGG:ns NR:ns ## COG: SA0309_2 COG1075 # Protein_GI_number: 15926022 # Func_class: R General function prediction only # Function: Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 323 676 1 354 363 460 61.0 1e-129 MKNNNRIKRFSIRKYAVGVVSIITGVTIFIGGQQAQAAEISVQHADAHPEDSQTTQQLKN DKVEETLKASKQGTADSQQVQRIDQSKTNQNNQHSVAESAQLKSDETANQPKVEEESSVK QDIQPSKNVNQQDVATQSNERENNDIKGEDQTSKASNQHTQSSNSHNQSIGTKDSDSEEI DQPLVKLQKPSNDSTYQTQSKAKQDSSKQLPQEKTAKHQIQTTENEQTTNVNSKKANDTQ DARQHTQEPKNDTSRLQKNHHKVATKEQSNRSTTRETQKQSANSNRNHQSTHQAQFKNQY PVVFVHGFLGFAGDNQFSLAPKYWGGTKYNIDRNLTNEGYNVHEANIGAFSSNYDRAVEL YYYVKGGRVDYGAAHAAKYGHHRYGRTYKGIMRDWEPGKKIHFIGHSMGGQTIRQMEEFL RNGNQEEIEYQRQHGGTISDLFTGGKDNMVASITTLGTPHNGTPAADKIGTRKLVKETIN RIGRLSGGKDVDIDLGFSQWGLKQQPNESYIDYAERVSKSKIWNTEDQAVNDLTTQGAEK INQQTSLNPNIVYTTYTGSATHTEPLGNELPNSSEILLLNLTSRIIGKDANKEIRPNDGV VPVISSQHPSNQAFKKVDDHTPATDKGVWQVRPVQHDWDHLDLVGMDAFDLTHTGRELGQ FYLGIMDNIMRIEEADGITNK >gi|224999867|gb|ACJC01000133.1| GENE 41 50449 - 50640 262 63 aa, chain - ## HITS:1 COG:no KEGG:SERP0019 NR:ns ## KEGG: SERP0019 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 63 1 63 63 107 98.0 1e-22 MKFKELIKQSYEDLKNLTINWFNVLSLTVIIFILSNIVTPLIGIPVGLLGGAYVLKRREE KNK >gi|224999867|gb|ACJC01000133.1| GENE 42 50685 - 52565 1675 626 aa, chain - ## HITS:1 COG:SA2493 KEGG:ns NR:ns ## COG: SA2493 COG0577 # Protein_GI_number: 15928287 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 626 1 626 626 650 57.0 0 MTFNQLILKNLRKNIKHYGMFLFSLLISIILYFSFSTLKYSHSINNSDSSTIIKNGATIG ATILFIIIVVFLMYANHLFIKRRTKEFALYQLIGLTRRNILRMLNIEQLVFFIVTGILGT LIGIFGSKLLLVIASKLMKLNTHISIGFEPQAILITIVMLAVAFLLIMIQNYIFLKKHSI LALMKDNYTPEATQKRITTFEAISGVLGIIMIVFGYYMSTEMFGVFKALTTALITPFSIL FLTIIGAFLFFRSSVSLIFKTLKHIKHGRVNITDVVFTSSIMHRMKKNAMSLTVIAIISA FTVSILCFAAITQSNTNITLEMTSPDDFNISQNKIATQFKHKLDQGNLKYHQRTYEVINP KTLSDHVMKSKNGSDMSTNTTSLMMNSHLKGHEAKITNIQSSTGLIDIHLNHKITVKGKS KQSIIVKDKDDSKIYPSQLSFGAPIVEVSPEVYNTLKTDNIVNKMYGFNFNTHKDVKKAE KIASKVNRNIVSHDEYKKFINQSNGILIFVTSFLGIAFLMAAGCIIYIKQMDETEDELDN FKILRRIGFTYTDMSKGLLLKIAFNFGLPLLIALLHALFAALAFMKLLGNVSMSPIFIVM IIYTVVYFIFAMISFIHSSRMIKHSI >gi|224999867|gb|ACJC01000133.1| GENE 43 52555 - 53313 302 252 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 221 4 220 223 120 30 3e-26 MAILTANQLSKVYGHKQKYRALNNISFSVEKGEFVAVMGPSGSGKTTLLNVLSSIDTISG GTVEVEGKEINKLNHKEVANFRKQHLGFIFQDYSVLPTLTVKENIMLPLSVQKFHKYEME QNYKEVAEALGIYNLGNKYPSEISGGQQQRTAAARAFVHKPTIIFADEPTGALDSKSAQD LLHRLEDMNKQFNSTIMMVTHDPSAASYAERVIMLKDGDIHSEIYQGNDSKQTFYQEIMK LQTALGGVTHDI >gi|224999867|gb|ACJC01000133.1| GENE 44 53607 - 53987 505 126 aa, chain + ## HITS:1 COG:no KEGG:SE2399 NR:ns ## KEGG: SE2399 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 126 8 133 133 206 98.0 2e-52 MKKVFMIISILTITVTLSACGGSGKQKEPSKESQKSDKYDYVYYEILNDGDSETPNVEIK YKDKKGKSHIEKADLDHVYEHILDDGNKKPYIVKDGKKIHVYRPPYMIYGDDDVEGKAIS KDEVTK >gi|224999867|gb|ACJC01000133.1| GENE 45 54003 - 54647 543 214 aa, chain + ## HITS:1 COG:no KEGG:SE2398 NR:ns ## KEGG: SE2398 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 214 1 214 214 228 97.0 1e-58 MKQLLYKTSCVMMVFLTSSLSIVSTYSHATTSGGTSSSSSASSSSSSSAASASRGSTSSS TSMSRSSAINASRNAQQSSQRAAQQATKSSRVTATKNKGQQSVSSQKAQSRSLMPSQRPY DSSAPYSSQYIATTYYNNWLFYYIFAYSFLNQHEKKNSVDAQFNMLKQQMKPHEKLYTVT VKTKQGKRVVVVPKKQYDKIEKGKHIKVKNGVVQ >gi|224999867|gb|ACJC01000133.1| GENE 46 54713 - 55291 576 192 aa, chain + ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 192 1 191 191 194 53.0 9e-50 MKKEIIEWIVAIIVAIVIVTLVQKFLFASYTVKGASMHPTFENREKVIVSRIAKTLDHID TGDVVIFHANAKQDYIKRLIGKPGDSVEYKKDQLYLNGKKVDEPYLSENKKHKVGEYLTE NFNSKDLKGTNGNMKIPNGKYLVLGDNRQNSIDSRMDEVGLLDKNQVVGKVVLRYWPFNR WGGSFNPGTFPN >gi|224999867|gb|ACJC01000133.1| GENE 47 55354 - 56718 980 454 aa, chain - ## HITS:1 COG:STM0079 KEGG:ns NR:ns ## COG: STM0079 COG0477 # Protein_GI_number: 16763469 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Salmonella typhimurium LT2 # 12 448 5 426 446 147 25.0 6e-35 MNFVKSKTDLFRLIDDEAQTSTSKVVLFLILGTIFLDAYDITILGTMTDQLTQQFHLSPA TLSIVMTSLPIGALFGALLGGTLAYQFGRKRILSIALLTLTVTSLGAAFAPNVIILIICR CVMGFAIGMDSPVAFTFIAEISNLKHKGRNVNYWQVVWYVAIVTSALVVIAFFMLGAGAH LWRYAVGFGAFIAFVLYILRIKYLHESPTWAINHYSLEKATEFIRKYYHKDIHLEGTLDD DLSSDVTSPQNSWTDLFKPRYIKRIILATAISTLQGMQYYGVGLYIPIIATYLISKEKIG VLLGTAIVNIAGILGAYLGAQLTYKLGTRKLTMIGFTLVLISMVCVGLFYHHLPMLLNTF LIGLFLFGHSGGPGTQGKTIGALSFPTHLRSQATGFVESVSRTGSIIGTFVFPIILAAVG LTNTMLILSIVPLLGIIITVSIKWEAVGKHIEVE >gi|224999867|gb|ACJC01000133.1| GENE 48 58064 - 58579 391 171 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228004629|ref|ZP_04051602.1| acetyltransferase, ribosomal protein N-acetylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] # 1 166 12 177 184 155 44 1e-36 IKILEEREAEQLFKLVDSNRDYLAEFLPFVEHTKKVEDSKHFIHSALQQFIDGNGFHCGI WNNKELIGVIGLHYLDLVNKTTSIGYYLAEDFQKKGIMTKCTKTLIRYVYEEYDINRIEI RMSTKNKKSRAIPIRLGFTQEGILRSNERLQGEFSDSYVFSLLREECTYTR >gi|224999867|gb|ACJC01000133.1| GENE 49 58701 - 59165 638 154 aa, chain - ## HITS:1 COG:no KEGG:SE2391 NR:ns ## KEGG: SE2391 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 154 1 154 154 299 100.0 3e-80 MSNITVYNVIELGVNNLLADYDNWNVEEVLDKETQHFPNTLHWQYGHVLTIFEQALSLGN QHVVDVEKYNKLFGYGSNPRDWKGQDVPAINEIKQHIQTLPERAKKLTHEQLAQKLDQPI AGCNTLDELLMLNAIHVPLHTGKIEEMTRVLREK >gi|224999867|gb|ACJC01000133.1| GENE 50 59644 - 59874 274 76 aa, chain - ## HITS:1 COG:no KEGG:SE2390 NR:ns ## KEGG: SE2390 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 65 1 65 76 110 98.0 2e-23 MTLLTKVLDILTGICVALLFTKYFVNYANDMFDWHLRWYFLENVPHLALILFILVFIFAV PSEMIKDKNKKKHNDS >gi|224999867|gb|ACJC01000133.1| GENE 51 60026 - 60664 402 212 aa, chain - ## HITS:1 COG:no KEGG:SE2389 NR:ns ## KEGG: SE2389 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 212 1 212 212 292 99.0 6e-78 MKGLTLSIFYTAKKSFFIYLVVGIIAAVVFSFLNPTMNSFLAIIFLISPITDNFKREKDS RWMNYISTLPVRRADYVKSYYTIFLLCALVGILAGVPSVGLITQSLSMVFISLCVAIGGA GTFSIMFPLTFKFGSENSNVIVMTTTFAVIIIYFLFYIASMILSNQTGSGSMITMLSNTQ SYVVYSIYGILGLISMIISYILSIKIFNKQEL >gi|224999867|gb|ACJC01000133.1| GENE 52 60664 - 61506 997 280 aa, chain - ## HITS:1 COG:SA0339 KEGG:ns NR:ns ## COG: SA0339 COG1131 # Protein_GI_number: 15926052 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 280 1 280 280 337 63.0 2e-92 MENLLEVQQLNKSYKNSEFQLTDITFSVKPGEVVGLIGKNGSGKSTLINTLVGNRHKDNG SLKFFDKEVTENDFKYKEHLGVVFDDLRVPDKLTLQSINKVFTEIYDAWNSDTFFSLIKA FELPTNNQIKTFSRGMRMKAALTIALSHDAKLLILDEATAGMDVSGREHVLEILEDYLGD DRAILISSHISEDIEQLATQLVFMRDGQIILKESKEILLSQYGIIDQPVEHFNISNEYLI ATRRRNDRQISLVNNYQKVPDAQPLKTIDDATKIIMRGEV >gi|224999867|gb|ACJC01000133.1| GENE 53 61534 - 62268 182 244 aa, chain - ## HITS:1 COG:no KEGG:SERP0028 NR:ns ## KEGG: SERP0028 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 244 1 244 244 322 97.0 9e-87 MKIKRYALLCLLGGLVGGIIGYIIGAINWEKLFNYAQFANFKVVLYTTIVASLINVILTV YLFIVQNASLHYKAKIDANISDDLADTYENKSYTKSLKVRFIYTMQLIVAFIAILIPVIG NASENHIALIMIPFIITIISSIMIGIFYRKFDARYPKLGEKHYTEKAFNIMDEGERYITL VSLYKVHQQNIVLLFIGIMMLGIFSITTGMNQSLGIILFIILFTYNSLGYLLKVSNFYKS EQKS >gi|224999867|gb|ACJC01000133.1| GENE 54 62265 - 62468 145 67 aa, chain - ## HITS:1 COG:SA0337 KEGG:ns NR:ns ## COG: SA0337 COG1476 # Protein_GI_number: 15926050 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 66 1 66 67 92 77.0 1e-19 MRNRLKELRARDGYNQTELAKKAGISRQTVSLIERNDFTPSILTAIKIARIFGEPVEDIF IMEEEDF >gi|224999867|gb|ACJC01000133.1| GENE 55 62772 - 62954 176 60 aa, chain + ## HITS:1 COG:no KEGG:SERP0030 NR:ns ## KEGG: SERP0030 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 60 7 66 66 107 100.0 2e-22 MKNFEGEKSHFGDLFEGMKDINFPENITTPREIMEKFQHWLQEPSLHDTIQDAIKQYQNK >gi|224999867|gb|ACJC01000133.1| GENE 56 63573 - 63785 148 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243287|ref|ZP_04797732.1| ## NR: gi|242243287|ref|ZP_04797732.1| hypothetical protein HMPREF0791_1813 [Staphylococcus epidermidis W23144] # 1 70 1 70 70 129 100.0 7e-29 MTIDHNGIFLCKFGNIMWNVFTTIKVCNTHLNTMKVRDKLLNNRFEYPNIMTIRKEGLLL PSFLEKYKLY >gi|224999867|gb|ACJC01000133.1| GENE 57 63801 - 64985 1765 394 aa, chain + ## HITS:1 COG:SA0342 KEGG:ns NR:ns ## COG: SA0342 COG0183 # Protein_GI_number: 15926055 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Staphylococcus aureus N315 # 1 392 1 392 393 573 73.0 1e-163 MSRIVLAEAYRTPIGVFGGAFKDIPAYELGATVIRQILEHSQIDPNEINEVILGNVLQAG QGQNPARIAAIHGGVPEAVPSFTVNKVCGSGLKAIQLAYQSIVAGDNEIVIAGGMESMSQ SPMLLKNSRFGFKMGNQTLEDSMIADGLTDKFNDYHMGITAENLVEQYQISRKEQDQFAF DSQQKASRAQQAGVFDAEIVPVEVPQRKGDPLMISQDEGIRPQTTIDKLAQLRPAFKKDG SVTAGNASGINDGAAAMLVMTEDKAKALGIQPIAVLDSFGASGVAPSIMGIGPVEAIRKA LKRSNKVIDDVDIFELNEAFAAQSIAVNRELQLPQDKVNVNGGAIALGHPIGASGARTLV SLLHQLSDAKPTGVTSLCIGGGQGIATLVSKYGV >gi|224999867|gb|ACJC01000133.1| GENE 58 65959 - 68205 2600 748 aa, chain - ## HITS:1 COG:SA0344 KEGG:ns NR:ns ## COG: SA0344 COG0620 # Protein_GI_number: 15926057 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Staphylococcus aureus N315 # 1 742 1 742 742 1328 88.0 0 MTTIKTSNLGFPRLGRKREWKKAIENYWAHKIDKAELDQTLTDLHKENLLLQKNYHLDSI PVGDFSLYDHILDTSLLFNIIPERFQGREVNDDLLFDIARGNKEHVASALIKWFNTNYHY IVPEWDNVEPKVEKNTLLERFKYAQSINVNAHPIIVGPITFVKLSKGGHQSFEEKVETLL PLYKEVLQSLVDAGAEYIQIDEPILVTDDSESYEDITRKAYDYFANEGLGKYLVIQTYFE RVHLKFLSSLPVGGLGLDLVHDNGYNLKQIEAGDFDQSKALYAGIIDGRNVWAADIEAKK QLIETLQQHTQQLVIQPSSSLLHVPVSLDDETLDESIAEGLSFATEKLDELDALRRLFND DDLSKYEHYKARYERFQSRSFKNLEYDFESVPTHRKSPFAKRKQLQNQRLNLPDLPTTTI GSFPQTREVRKFRADWKNNRITDAEYQEFLQNEIARWIKIQEDIGLDVLVHGEFERNDMV EFFGEKLQGFLVTKFGWVQSYGSRAVKPPVIYGDVKWTAPLTVKETVYAQSLTDKPVKGM LTGPVTILNWSFERVDVPRKVVQDQIALAIDEEVLALEEAGIKVIQVDEPALREGLPLRS EYHEQYLEDAVHSFKLATSSVHDETQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHG DLIQDFEDINYDLGIGLGVYDIHSPRIPTEEEITTAINRSLQQIDRSLFWVNPDCGLKTR KEDEVKDALTVLVNAVKKKRQESESTTA >gi|224999867|gb|ACJC01000133.1| GENE 59 68241 - 70040 1622 599 aa, chain - ## HITS:1 COG:SA0345_2 KEGG:ns NR:ns ## COG: SA0345_2 COG0685 # Protein_GI_number: 15926058 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Staphylococcus aureus N315 # 285 599 1 316 329 521 83.0 1e-147 MSHLLNQLKSNVLVADGAIGTIFYSEGLDTCPEAYNLTHPDKVERIHRSYIEAGADVIQT NTYGANFEKLKSFGLEHKVKEIHQAAVQIAKRAANEDTIILGTVGGFRGVRQEDISLSTI QYHTELQIDTLIDEGVDALLFETYYDLDELTRIVTATRQKYDIPIIAQLTASNTNYLVDG TEINEALKYVVECGANVVGLNCHHGPHHMQRSFSHIELPKHAYLSCYPNASLLDIENSEF KYSDNAQYFGDIAQELINEGVRLIGGCCGTTPEHIRYIKSAVKHLKPVKDKKVIPINKAS SQKQARVLKQNLTSKVKNGPTVIVELDTPKHLDTDTFFDNVGKLDEAGIDAVTLADNSLA TVRVSNIAAASLIKQRYDIEPLVHVTCRDRNLIGLQSHLLGLSLIGVNEILAITGDPSKV GHLPGATNVYDVNSKGLTELALRFNKGINTDGDALKKHTNFNIAGAFDPNVRKLDGAIKR LEKKVASGMSYFITQPVYSKEKIIQVYEETKHLNTPFFIGIMPIASYNNALFLHNEVPGI KMSDDVLNQFKAVKDDKEKTKELSLRLSKELIDTVHEYFNGLYIITPFQKVDYSLELAA >gi|224999867|gb|ACJC01000133.1| GENE 60 69994 - 71169 1203 391 aa, chain - ## HITS:1 COG:SA0346 KEGG:ns NR:ns ## COG: SA0346 COG0626 # Protein_GI_number: 15926059 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Staphylococcus aureus N315 # 1 385 1 385 386 607 78.0 1e-173 MSLSKETEVIFDVRRGKDYDSANPPLYDSSTFHQKVLGGESQYDYARSGNPNRTLLEEKL ARLEGGKYAFAYASGIAAISAVLLTLNAGDHVVLPDDVYGGTFRLTEQILNRFNIEFTTV NATHIDHIAEAIQSNTKLIYVETPSNPLFKITDIHAVATLAKEHKLLLAVDNTFMTPLGQ SPLALGADIVIHSATKFLGGHSDLIAGAAITNNREVANALYLLQNGTGTALSAYDSWALA KHLKTLPVRFKQSVHNAERLVQFLSQREEISEVYYPGNNPTHLKQASTGGAVIGFRLKDE SKAQKFVDSLTLPLVSVSLGGVETILSHPATMSHAAVPEDVRRERGITFGLFRLSVGLEN PEELIADFNYALKEAFNESFTEPIKEQRFSS >gi|224999867|gb|ACJC01000133.1| GENE 61 71166 - 72269 951 367 aa, chain - ## HITS:1 COG:SA0347 KEGG:ns NR:ns ## COG: SA0347 COG0626 # Protein_GI_number: 15926060 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Staphylococcus aureus N315 # 1 366 1 366 367 590 79.0 1e-168 MKDTDLAQIALTQDHTGAIANPIYLSTAYQHPHLGESTGYDYTRTKNPTRTAFEEAFAQL EKGIASFATSSGMAAIQLICNIFKPGDEILVAFDLYGGTFRLFDFYEKQYGLKFKYVDFL NYEEVEKNITPQTRALFIEPISNPQMIEIDVEPYYILSKKHQLLTIIDNTFLTPYLSTPL EEGADIVLHSATKYIGGHNDVLAGVVTVKDAQLAEQLNQFHNMIGATLSPLDSYLLQRGL KTLHLRIERSQENAQKLAQRCRQSDSIDEVLYSGRTGMLSLRLNQAYSVAKFLENLDICI FAESLGGTETFITFPYTQTHVDMPDEEKDKRGIDEYLIRLSVGIEDYNDIEADIIQALEN SKVGVIS >gi|224999867|gb|ACJC01000133.1| GENE 62 72997 - 73839 858 280 aa, chain + ## HITS:1 COG:SA0348 KEGG:ns NR:ns ## COG: SA0348 COG1475 # Protein_GI_number: 15926061 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 277 1 276 278 317 65.0 2e-86 MAYTDDQRLKMNNDDSVQFIALELIRPNPYQPRKTFEEERLNDLASSIQQHGILQPIVLR QTVQGYYIVVGERRFRASKLAGLTEVPAIIKELSDEDMMELAIIENLQREDLNAIEEAES YKKMMTDLNITQQEVARRLGKSRPYIANMLRLLQLPKNVAQMVQHGVLSSAHGRTLLTLK DASKIKKTAKKAAQESWSVRYLEEYVNGLVSKDISMKLDKETKGSKPKMIQQQERFLKKQ YGTKVDISTSKNVGKITFEFKSEAEFKRLIRQLNKDYMEY >gi|224999867|gb|ACJC01000133.1| GENE 63 73995 - 74870 1032 291 aa, chain + ## HITS:1 COG:SA0349 KEGG:ns NR:ns ## COG: SA0349 COG0668 # Protein_GI_number: 15926062 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Staphylococcus aureus N315 # 1 291 1 291 293 396 81.0 1e-110 MNQLKHILSSLFEPLTKVETYENLITKVIMILIYILVAIVVIAILNKIIEQAFKIQNKSK KGNKKRSKTLISLVQNIVKYIVWFVVITTILSKFGISVEGIIASAGVVGIAVGFGAQTIV KDIITGFFIIFENQFDVGDYVKINSSGTTVAEGTVKSIGLRSTRINTISGELTILPNGSM GEITNFSITNGTAIVELPVSVDENIDQVEKKLNRLFVSLRSKYYLFVSDPVVDGIDAIES NKVTIRISAETIPGEGFSGARIIRKETQKMFRQEGIRMPQPVISNYNEGKS >gi|224999867|gb|ACJC01000133.1| GENE 64 74891 - 75106 254 71 aa, chain + ## HITS:1 COG:SA0350 KEGG:ns NR:ns ## COG: SA0350 COG4481 # Protein_GI_number: 15926063 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 66 1 66 67 95 77.0 3e-20 MTSKYGINDIVEMKKPHACGTNRFKIIRMGADIRIKCEHCQRSVMIPRQVFNKKMKKVLE FHQDKESKENE >gi|224999867|gb|ACJC01000133.1| GENE 65 75106 - 76203 1653 365 aa, chain + ## HITS:1 COG:SA0351 KEGG:ns NR:ns ## COG: SA0351 COG0012 # Protein_GI_number: 15926064 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Staphylococcus aureus N315 # 1 365 1 365 365 667 94.0 0 MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQP KKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRVN PLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEMELRILTQIKEALEDGKPVRS IDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDKDNDKVKAIREYAANEDSEVIVISA KIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAWTFKQG MTAPQCAGIIHTDFERGFIRAEVTSYDDYVQHGGENGAKEAGRQRLEGKDYIMQDGDIVH FRFNV >gi|224999867|gb|ACJC01000133.1| GENE 66 76397 - 76588 260 63 aa, chain - ## HITS:1 COG:no KEGG:SERP0042 NR:ns ## KEGG: SERP0042 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 63 1 63 63 129 100.0 4e-29 MRLNLDWNKDFQEFQDILNSGIHPEWLYCAKANLVLEPAYTGEGKQFFSTQDIIKASKII PFF >gi|224999867|gb|ACJC01000133.1| GENE 67 76662 - 77471 859 269 aa, chain - ## HITS:1 COG:no KEGG:SE2373 NR:ns ## KEGG: SE2373 # Name: not_defined # Def: 1,4-beta-N-acetylmuramidase # Organism: S.epidermidis # Pathway: not_defined # 1 269 1 269 269 435 97.0 1e-121 MLKKFSYSIISLSIFATSLNFIDTQAQASSSSVSEKGTMGYGYQQYLKDHPKKQPHKTQN RSTFSAESNITETNNGERVLDISEWQGLLTNEQIKQLKKNYDFIILRAQYGSEYVDKTFE KNAALLEQNKMKYGVYSYSMYESPKDARYEANTLSQRAPKAAFYINDYEEQTVTSGDDET ATQAWANEMRKLAGNKKILFYSYENFMLNHASNAVSSYDGYWLAAYQAKEPNREKVLWQY TDSYYSPELNQNVDANYIDENVNSSWFTS >gi|224999867|gb|ACJC01000133.1| GENE 68 77856 - 78152 502 98 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27469290|ref|NP_765927.1| 30S ribosomal protein S6 [Staphylococcus epidermidis ATCC 12228] # 1 98 1 98 98 197 100 2e-49 MRTYEIMYIVRPNIEEDAKKALVERFNGILASEGSEVLEEKDWGKRRLAYEINDFKEGFY NIVRIKTDNNKSTDEFQRLAKINDDIIRYIVIREDQDK >gi|224999867|gb|ACJC01000133.1| GENE 69 78175 - 78684 627 169 aa, chain + ## HITS:1 COG:SA0353 KEGG:ns NR:ns ## COG: SA0353 COG0629 # Protein_GI_number: 15926067 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 169 1 167 167 222 84.0 2e-58 MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAEN VNNYLSKGSLAGVDGRIQSRSYENQEGRRIFVTEVVCDSVQFLEPKNAQQGGQRSQNNNF QDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPIDISDDDLPF >gi|224999867|gb|ACJC01000133.1| GENE 70 78705 - 78971 452 88 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243301|ref|ZP_04797746.1| 30S ribosomal protein S18 [Staphylococcus epidermidis W23144] # 1 88 1 88 88 178 100 1e-43 MSQRRQLTMAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKILPRRVTGT SAKYQRMLTTAIKRARHMALLPYVKEEQ >gi|224999867|gb|ACJC01000133.1| GENE 71 79805 - 80050 176 81 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243303|ref|ZP_04797748.1| ## NR: gi|242243303|ref|ZP_04797748.1| hypothetical protein HMPREF0791_1829 [Staphylococcus epidermidis W23144] # 1 81 1 81 81 112 100.0 5e-24 MLNKNVKYPHAKILFDIVGIISSISILLLIAFNLYLKFESSGNVEIGVKWNESSLYIGLT LLVFIILCAIISYVLKFIKRN >gi|224999867|gb|ACJC01000133.1| GENE 72 80076 - 80666 576 196 aa, chain + ## HITS:1 COG:BS_ydeA KEGG:ns NR:ns ## COG: BS_ydeA COG0693 # Protein_GI_number: 16077578 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Bacillus subtilis # 1 196 1 196 197 262 62.0 2e-70 MKKALFLLLDEFADWEGAHLSSTLNQDDSWSVSTVSIEKNVSSLGGFSVLVDYIIGDEPK DYDLLVMVGSNSWDNDSEKLLDFVEEAFNKKIVIGAICGAVDYLARNGFLNKYKHTGNSV YIWQNYKKYKPENKFLEKQSVSDNLLITANGTAPLEFTESVLREIDFDVDENIEKTMFMK RFGFYKYCEKYGNPYL >gi|224999867|gb|ACJC01000133.1| GENE 73 81502 - 81846 327 114 aa, chain + ## HITS:1 COG:no KEGG:SSP2361 NR:ns ## KEGG: SSP2361 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 114 1 114 114 131 65.0 6e-30 MSNLIRLENACVFIAVVSVYFIFDFSLWIFLLFLLVPDISMVGYAVNKDIGSKVYNLGHT YVLPIIVTLLYLVTNEETILQISLIWLAHISMDRTIGYGLKYALGFDKTTIQKV >gi|224999867|gb|ACJC01000133.1| GENE 74 82112 - 82504 467 130 aa, chain + ## HITS:1 COG:BS_yetL KEGG:ns NR:ns ## COG: BS_yetL COG1846 # Protein_GI_number: 16077789 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 119 40 158 167 82 36.0 2e-16 MKNNYDSFIEDYGLTEAKFSILMLLLYEENLTLSPSELSKKIGNKKSTITGIIKGLEKQG LVRRVNISNDKRTSYVQMTELGYSKLNEFLPYNYDFVSNVFSDFDEQEKEMFFHLMNKLR NNIERDGEDE >gi|224999867|gb|ACJC01000133.1| GENE 75 82497 - 82856 446 119 aa, chain + ## HITS:1 COG:no KEGG:SLGD_02042 NR:ns ## KEGG: SLGD_02042 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 119 1 119 119 204 87.0 1e-51 MNKIEFLETFLSFYINHHVVLEDMEKGTNKYTVIDVRNAPKKVKKDKIKGSIEIPAKELH EYLSELSKDKVYVVYDWTGGTILGKQALLELYQNGFEAYELAGALEGWKGMSLPLENVE >gi|224999867|gb|ACJC01000133.1| GENE 76 83129 - 83329 126 66 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKYFTSLKLGLYLLILIVLQPIVFNILNLERSKTISIIGHLIFILIGILLIYLHSRYNK DRNDNI >gi|224999867|gb|ACJC01000133.1| GENE 77 83425 - 83841 253 138 aa, chain + ## HITS:1 COG:no KEGG:SH2076 NR:ns ## KEGG: SH2076 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 138 1 138 138 174 92.0 1e-42 MSRLLEELKYCGFNFILLLFGYLTFYRPANESREFFQKEYGDKIKLSHFFNDSYRNVGME HINLYIYAIIIFIIAIVIAIIILKLTNQVLYSPFIQILISISLIVMSLYSMVNTYIASIL LAAAFIVLVIWAFVNDSR >gi|224999867|gb|ACJC01000133.1| GENE 78 84687 - 84947 251 86 aa, chain - ## HITS:1 COG:no KEGG:SERP0048 NR:ns ## KEGG: SERP0048 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 86 1 86 86 119 97.0 3e-26 MQHKNKFQRINQIIQIIGFLSFLAILTIITLNFFIKGHLQGHFEIGFNIQSNQVYVVTTL IIITIICTILSAILNMLSNKKQNYKH >gi|224999867|gb|ACJC01000133.1| GENE 79 85169 - 85423 450 84 aa, chain + ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 83 1 83 83 79 72.0 1e-15 MFGLIGMIIVGGIIGWIAGLILGKDVPGGILGNIIAGIVGSWVGTMILGEWGPQLGKIHI FPALLGSIILIFIISLILKALRKK >gi|224999867|gb|ACJC01000133.1| GENE 80 85896 - 86528 525 210 aa, chain + ## HITS:1 COG:BS_yrhP KEGG:ns NR:ns ## COG: BS_yrhP COG1280 # Protein_GI_number: 16079764 # Func_class: E Amino acid transport and metabolism # Function: Putative threonine efflux protein # Organism: Bacillus subtilis # 1 207 1 210 210 117 39.0 2e-26 MDSLITFIIITLLIIIVPGPDFIIVMKNTINSSKMNGFMAAFGITTGHILYSSLAIFGII YILTSLHFVFLTIKILGACYLIYLGIKSILSAHSSVDFSKQALADVRNVSYITSFRQGFL STSLNPKALLFYVSIFPQFLSNGNIHMKSEIALFAFSVVVVTCLWFLFCVFIFQYIKLLF SRPRFKAIFDYIVGFVLIGLSINLLLSKSS >gi|224999867|gb|ACJC01000133.1| GENE 81 86549 - 87139 337 196 aa, chain + ## HITS:1 COG:SA0361 KEGG:ns NR:ns ## COG: SA0361 COG0406 # Protein_GI_number: 15926077 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Staphylococcus aureus N315 # 1 191 9 201 201 224 60.0 6e-59 MEIYLVRHGESQSNYDNKHGYLYFCGQLDIPLTERGIKSARELSAYFKNKYIDTVYVSDL KRTRQTYDELFPYDLPTIYTKTLRERSLGVFEGKNKKEVCKDKRFEKYFHDPNYKYFRHS FSQKAPQGESYQDVYDRVVTFIENELNQRQRRVVIVAHQVVIRCFFVYFKMITKEEALST EILNCYPYLIKKEMKS >gi|224999867|gb|ACJC01000133.1| GENE 82 87495 - 87872 370 125 aa, chain - ## HITS:1 COG:no KEGG:SE2362 NR:ns ## KEGG: SE2362 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 125 1 125 125 127 96.0 1e-28 MKIRLTFIILAILSTIGLVLVLAKYPTGPHTINYNEPYTVLIAITTIVIMALPALILGIF NHLACRIISAILQISALMIWGFLVIISLMMGQIVITLMASLTILALLVSSIVTLSVHPST SDRIN >gi|224999867|gb|ACJC01000133.1| GENE 83 88089 - 88712 620 207 aa, chain - ## HITS:1 COG:no KEGG:SE2360 NR:ns ## KEGG: SE2360 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 207 1 207 207 306 99.0 3e-82 MKKRVITYLILALSLTLAACSNTNDNNNQEHHSNAHAPKNAKTLKEKDIFSSNKKGQKIS EKEMKQALEKYLQANNDVLDNKYVMQHKLDKQSDSNPKITESQADRLSKLSNLAVKNDLH FKKFIKNNHIPEEYKNPTDRIINYFHALNSTISNVDEDIEKLNYQPQNSINVVDVPTKYS GDVNKKQQDKITTFLKKKGIDTEVFNK >gi|224999867|gb|ACJC01000133.1| GENE 84 88963 - 90486 422 507 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 206 504 2 303 306 167 32 3e-40 MLNADLKQQLQQILELMEGDVEFVASLGSDDKSNELKELLNEIAEMSAHITITEKSLKRT PSFSVNRPGEETGITFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKGLEGPFHFE TFVSLTCQKCPDVVQALNLMSVINPNITHTMIDGAVFREESENIMAVPAVFLDGQEFGNG RMTVQDILTKLGSTQDASEFNDKDSYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGG QVNDTAGIENFITVKETTGSEFSSNLAEHIAQYDIDTMTGIRATNIEKTDSAIRVTLEND AVLESKTAIISTGASWRKLNIPGEDRLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEA AIDLAGIVKHVTLFEYASELKADSVLQERLRSLPNVDIKTSAKTTEVIGDDYVTGISYED MTTGESQVVNLDGIFVQIGLVPNTSWLQNAVELNERGEVMINRDNATNVPGIFAAGDVTD QKNKQIIISMGAGANAALNAFDYIIRN >gi|224999867|gb|ACJC01000133.1| GENE 85 90501 - 91070 685 189 aa, chain - ## HITS:1 COG:SA0366 KEGG:ns NR:ns ## COG: SA0366 COG0450 # Protein_GI_number: 15926082 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Staphylococcus aureus N315 # 1 189 1 189 189 356 89.0 1e-98 MSLINKEILPFTAQAYDPKKDEFKEVTQEDLKGSWNVVCFYPADFSFVCPTELEDLQNQY AKLQELGVNVYSVSTDTHFVHKAWHDHSDAISKLEYSMIGDPSQTITRNFDVLDEESGLA QRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQ PGLDLVGKI >gi|224999867|gb|ACJC01000133.1| GENE 86 91515 - 92294 807 259 aa, chain - ## HITS:1 COG:DRA0122 KEGG:ns NR:ns ## COG: DRA0122 COG3971 # Protein_GI_number: 15807791 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase # Organism: Deinococcus radiodurans # 6 259 8 268 268 119 30.0 8e-27 MTPTNKEVAKVLFKAYRYKKPIDFISENYQLNEEEAYHVQEELIDQLTFKDRSTVTGYKV SMTSKATQAIANTNEPAYGTLLSNQIVNDGASVSLSELFSPLLEPEIIFIVQEDLPYDAD LETIRYHTRIAPGIEIPDARYKNWFPNFTLSDLISDNTATGLVVVGDSVDGLDNDAFANV HLNLYKDDKCIATGESSEVLGNPLNAIHWLIKKLHTHGKQLKKGDIISSGTFISPLKLEY GTYRAEYSGIGKVSFSVNK >gi|224999867|gb|ACJC01000133.1| GENE 87 92432 - 93187 768 251 aa, chain + ## HITS:1 COG:SA0367 KEGG:ns NR:ns ## COG: SA0367 COG0778 # Protein_GI_number: 15926083 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Staphylococcus aureus N315 # 1 251 1 251 251 363 70.0 1e-100 MSDYVYELMKQHHSVRKFKDQPLSSETVEKLVEAGQSASTSSYLQTYSIIGVEDPSIKAR LKEVSGQPYVLDNGYLFVFVLDYYRHHLVDEVAASNMETSYGSAEGLLVGTIDVALVAQN MAVAAEDMGYGIVYLGSLRNDVARVREILNLPDYTFPLFGMAVGEPSDEENGSPKPRLPF KHIFHKDQYDANHHQQRKELEAYDQVVSEYYKERTHGVRTENWSQQIETFLGRKTRLDML DELKKAGFIQR >gi|224999867|gb|ACJC01000133.1| GENE 88 93308 - 94696 1339 462 aa, chain - ## HITS:1 COG:SA0368 KEGG:ns NR:ns ## COG: SA0368 COG1823 # Protein_GI_number: 15926084 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Staphylococcus aureus N315 # 1 462 1 462 462 635 82.0 0 MEILFTVINVIVLLVFLIMLNIMARKHVSFPKRVFTALGIGIVFGIVLHLIYGAESKTLE QSTDWFSIVGDGYVALLQMIVMPLIFISIVAAFSKIQIGEKFAKIGSYIFMFLIGTVAIA AIVGIFYALIFGLDASSIDLGSAEHSRGTEISKQAKDLTANTLPQQILEVFPSNPFLDFT GQRTTSTIAVVIFATFVGFAYLRVARKQPEHGSLLKRGIEAIYSIVMAIVTFVLRLTPYG ILAIMASTLATSDFSAIWTLGKFLIASYAALITMYIIHLIILSVLGINPVKYVKKTIEVL IFAFTSRSSAGALPLNVQTQTKRLGVPEGIANFSATFGLSIGQNGCAGIYPAMLAVMVAP VANVEIDFQFVVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISIEPLI DMGRTALNVNDSMLAGTGTARLTNHWDKKTFDSNDYGDLSAN >gi|224999867|gb|ACJC01000133.1| GENE 89 95006 - 95908 1080 300 aa, chain - ## HITS:1 COG:no KEGG:SERP0064 NR:ns ## KEGG: SERP0064 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 300 1 300 300 291 98.0 2e-77 MLTKEFAQRVELSEKQVRKIVQHLEERGYHLSKTEYRGREATDFKEDDIELFTDIANKVK QTNSYDLAFEELEKEKDFLQVIVKDEDSQLPTDQNVAQLVEDLRSEIQKMREERQMLGQM INQVHHQQQELKELQTDITTKLESNAQSLKSIQNSQEAIQSAQEQQSKDIAKANELKDSE LRSHFDSMSNSASISQSNIASQSTTASLSQSESVNDSMSSSLSESNSITSESNTNSKSEI ESKSTSTSEFLSESGSVSNSEKSESISHSQSTSATPSSQSTYQQQPKEEKKGFFARLFNL >gi|224999867|gb|ACJC01000133.1| GENE 90 96034 - 96699 651 221 aa, chain - ## HITS:1 COG:no KEGG:SERP0065 NR:ns ## KEGG: SERP0065 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 221 1 221 221 381 98.0 1e-104 MEFKVIESAKDPLFSEALKLYDNKLDIGLDEDSKIFKRSLENNKTENDYAFIVGIENQTV VSLATAHYEATTNSAFLIYLIAKESPNHDERMSLTLEAIEKQLNLLSQEVHNRDINFIML EVPKEPSTVDIDDKLRNALEHRRQFLFENQFEKQDDIDYIHPNQNQKETPQKVDLFIKAN IELTKDIYGTSVKSNYILKYVFANGISREIIYPLLKEMNLR >gi|224999867|gb|ACJC01000133.1| GENE 91 96827 - 97234 654 135 aa, chain - ## HITS:1 COG:no KEGG:SERP0066 NR:ns ## KEGG: SERP0066 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 135 1 135 135 212 98.0 3e-54 MAKITVVNNQDELYKVINQKKSEGYLETELAVISKSKLHLDDLHNSQISLMSTSGSFSDR MSRLLTGEDGEEAVLSRYDLTDNELEGYKQDILNDKMLVVANSDRSSHDEVEDNNAAYKE VDITHYAAESEGPKA >gi|224999867|gb|ACJC01000133.1| GENE 92 97831 - 98409 632 192 aa, chain + ## HITS:1 COG:SA0373 KEGG:ns NR:ns ## COG: SA0373 COG0503 # Protein_GI_number: 15926089 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Staphylococcus aureus N315 # 1 191 1 191 192 311 85.0 4e-85 MESLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNDVGKTFYESFKDAGITKILTIEAS GIAPAIMASFHFDVPCLFAKKAKPSTLKDGFYSTDIHSFTKNKTSTVIVSEEFLGPDDKV LIIDDFLANGDASLGLNDIVKQANATTVGVGIVVEKSFQNGRQRLEDAGLYVSSLCKVAS LKGNKVTLLGEA >gi|224999867|gb|ACJC01000133.1| GENE 93 98406 - 99677 402 423 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 1 420 13 426 447 159 28 7e-38 VMKNFILSVQHLLAMYAGAILVPIIVGTSLKFSAEEIAYLVTVDIFMCGVATFLQANKVT GTGLPIVLGCTFTAVAPMILIGQTKGLDVLYGSLLISGILVVLIAPFFSYLVKFFPPVVT GSVVTIIGINLMPVAMNYLAGGEGAKNYGDTKNLMLGGITLLIILILQRFTKGFLKSIAI LIGLAIGTALAGIFGMVDIKQVGDAHWFGFPVPFRFSGFGFDVSSILVFFIVAVVSLIES TGVYHALSEITGRKLERKDFRKGYTAEGLAIILGSIFNAFPYTAYSQNVGLVSLSGAKKN NVIYGMVILLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGNINFQNQNN LLIIAISVGLGAGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEE NVK >gi|224999867|gb|ACJC01000133.1| GENE 94 99715 - 101181 1904 488 aa, chain + ## HITS:1 COG:SA0375_3 KEGG:ns NR:ns ## COG: SA0375_3 COG0516 # Protein_GI_number: 15926091 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 205 488 1 284 284 513 91.0 1e-145 MWENKFAKESLTFDDVLLIPAASDVLPSDVDLSVKLSDKIKLNIPVISAGMDTVTESKMA IAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPDESVYEAEALMGKYRI SGVPIVDNQEDRKLIGILTNRDLRFIEDFSIKISDVMTKDDLITAPVGTTLDEAEAILQK HKIEKLPLVENGRLEGLITIKDIEKVLEFPYAAKDEHGRLLAAAAIGTSKDTEIRAQKLV EAGVDALIIDTAHGHSKGVINQVKHIKETYPEITVVAGNVATAEATRALFEAGADVVKVG IGPGSICTTRVVAGVGVPQITAVYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAV MLGSLLAGTEESPGATEVFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKTPRKFVPEGIE GRTAYKGPLQDTIYQLMGGVRAGMGYTGSENLKKLREEAQFTRMGPAGLAESHPHNVQIT KESPNYSF >gi|224999867|gb|ACJC01000133.1| GENE 95 101348 - 102889 2033 513 aa, chain + ## HITS:1 COG:SA0376_2 KEGG:ns NR:ns ## COG: SA0376_2 COG0519 # Protein_GI_number: 15926092 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Staphylococcus aureus N315 # 199 513 1 315 315 606 95.0 1e-173 MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKRMNPKGIILSGGP NSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKATINAKSDEL FFGLPSEQTVWMSHSDKVIEIPEGFEVIADSPSTNYAAIEDKKRRIYGVQFHPEVRHTEY GNDLLRNFVRRVCNCTGEWTMENFIEIEIEKIRQQVGNRKVLCAMSGGVDSSVVAVLLHK AIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFDMNIIRVNAQERFMSKLKGVSDPERKRK IIGNEFVYVFDDEAAKLTDVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFEL IEPINTLFKDEVRALGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILR EVIREEGLERDIWQYFTVLPGIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEV LQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE >gi|224999867|gb|ACJC01000133.1| GENE 96 103032 - 103367 306 111 aa, chain + ## HITS:1 COG:SA1820 KEGG:ns NR:ns ## COG: SA1820 COG3728 # Protein_GI_number: 15927588 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Staphylococcus aureus N315 # 3 111 83 189 189 131 63.0 3e-31 MVTETKEIVIKHGEYKENPQNGKVQLVYNEYVQLVEGHTKPSDCLKVRDDMLGKYHKLFT ERKEFTGDTPVIVNIGEWYEGDEEDKQRALDKIKENSPNRTIIVDDIPLED >gi|224999867|gb|ACJC01000133.1| GENE 97 103829 - 104446 711 205 aa, chain + ## HITS:1 COG:SAP005 KEGG:ns NR:ns ## COG: SAP005 COG4300 # Protein_GI_number: 16119205 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Staphylococcus aureus N315 # 1 205 1 205 205 302 92.0 2e-82 MIQTIVTAAILYIATAVDLLVILLIFFAKAKTKKEYRDIYIGQYVGSVTLIVVSLFFAFV LNYVPEKWILGLLGLIPIYLGIKVAIYDDCEGEKRAKKELNEKGLSKLVGTVAIVTIASC GADNIGLFVPYFVTLSVTNLFITLFVFLILIFFLVFTAQKLANIPGVGEIVEKFSRWIMA VIYIALGLFIIIENDTIQTILGFIF >gi|224999867|gb|ACJC01000133.1| GENE 98 104465 - 104812 294 115 aa, chain + ## HITS:1 COG:SAP006 KEGG:ns NR:ns ## COG: SAP006 COG0640 # Protein_GI_number: 16119206 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 115 1 115 115 188 97.0 2e-48 MSYENACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVC DISLILKMSVASTSHHLRLLYKNEVLDFYKEGKMAYYFIKDDEIREFFSKNQEGF >gi|224999867|gb|ACJC01000133.1| GENE 99 106572 - 106778 71 68 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243334|ref|ZP_04797779.1| ## NR: gi|242243334|ref|ZP_04797779.1| hypothetical protein HMPREF0791_1860 [Staphylococcus epidermidis W23144] # 1 68 1 68 68 66 100.0 6e-10 MNIYDAILLGILFIIIYSVINTLLYNMNYRRMNRNKNLNRKMIMINLILHGVIALFMVSV AIYLSYFK >gi|224999867|gb|ACJC01000133.1| GENE 100 106965 - 107153 96 62 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243335|ref|ZP_04797780.1| ## NR: gi|242243335|ref|ZP_04797780.1| hypothetical protein HMPREF0791_1861 [Staphylococcus epidermidis W23144] # 1 62 1 62 62 87 100.0 2e-16 MRLNKTLSNRFLNKVDSLIKMFKTKLKYAIINPYHIKKARNTFVLVFLAFKMIILLFPLD DM >gi|224999867|gb|ACJC01000133.1| GENE 101 107368 - 108396 1360 342 aa, chain + ## HITS:1 COG:SA0298 KEGG:ns NR:ns ## COG: SA0298 COG1299 # Protein_GI_number: 15926011 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 338 1 338 343 437 86.0 1e-122 MDLLIGTLFLILVLVIFTLFTYKAPSGMKAMGALANAAIASFLVEAFNKYVGGQVFGIKF LEELGDAAGGLGGVAAAGLTALAIGVSPVYALVIGAACGGMDLLPGFFAGYIVGYMMKYT EKYVPDGIDLIGSIVILAPIARLIATGLTPVVNNTLIKIGDIIQSSTDTNPLIMGIVLGG IITVVGTAPLSSMALTALLGLTGAPMAIGAMAAFSSAFMNSALFHRLKLGDRKSTISVGI EPLSQADIVSANPIPIYVTNFFGGAIAGIIIAWSGMINNATGTATPIAGFLVMFGFNSLT KVIIYGVVMAIIGTIAGIVGSIVFKKYPIITKKQMLERDTMT >gi|224999867|gb|ACJC01000133.1| GENE 102 108911 - 109294 397 127 aa, chain + ## HITS:1 COG:no KEGG:SERP0079 NR:ns ## KEGG: SERP0079 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 127 1 127 127 244 99.0 6e-64 MKNVSPFIYVKDVDKSLCYYKDVFNAQTEILMGKDGRTYHAQLIIGDETFVHFSDTFHKH PVSKNPHLIIECDSLEELERVYKRLIDDGGHAKVKLNKTFFNAYHAEVKDHLNGIIWVFN YFLDEHI >gi|224999867|gb|ACJC01000133.1| GENE 103 109465 - 110667 1547 400 aa, chain + ## HITS:1 COG:SA0410 KEGG:ns NR:ns ## COG: SA0410 COG0523 # Protein_GI_number: 15926128 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Staphylococcus aureus N315 # 1 394 1 394 400 650 83.0 0 MAKIPVTVLSGYLGSGKTTLLNHILKNREGRRIAVIVNDMSEVNIDKDLVAQGGGLSRTD EKLVELSNGCICCTLRDDLLREVERLVHKGGIDQIVIESTGISEPVPVAQTFSYIDEELG IDLTSICRLDTMVTVVDANRFVNDIRSEDLLADRDESVDDEDERTIADLLIDQVEFCDVM IINKIDLISDEALEKLENVLRALQPEAKIIKTVNAKVELSDVLNTQLFDFEKASESAGWI KELTAGGHATHTPETEEYGITSFAYTRRLPFHAKRFHQWLEQMPENIVRTKGIVWLAQYN DVACLLSQAGSSCNIHPVTYWVATMSERQQEAILEARQDVAEDWDIEYGDRQTQFVIIGT DLDQEKISRELDACLIRSDEIDEDWRLLDSPYQWTYDQRM >gi|224999867|gb|ACJC01000133.1| GENE 104 110906 - 111094 125 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFTNIYNNTDFNFWYFPGAIIFVISIIINIIAMFKGNKTLNIILFFINFFALLIFTTPFA IV >gi|224999867|gb|ACJC01000133.1| GENE 105 112236 - 113732 1193 498 aa, chain + ## HITS:1 COG:SA0411 KEGG:ns NR:ns ## COG: SA0411 COG1009 # Protein_GI_number: 15926130 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Staphylococcus aureus N315 # 1 498 1 493 494 536 60.0 1e-152 MLSSEFVLFMFFITLVIAILSGLIFLNHQVPIQYIKFHIYLLVLPIIAGLSGLIFFGERV NVGPFVVDHLTWLMMTFILTLGFIIQKFSMRYLIGDMHYRKYFPFLTLITAFASLAWLSG DLRLMTMFWGATLFVLTRLIKVNKLWKVPREAARISAWSFTLAWLSLLIAVILLYIATGD WYIHSNMSDDNAINYGMRLCINLLIVLAVIIPAAQFPFQGWLIESVAAPTPVSAIMHAGI VNAGGVILTRFSPVFNDEIAISLLLIIASISVLLGSGISLVHVDYKRQLVGSTISQMGFM LVQCALGAYSAAIVHLILHGVFKATLFLQSGSVVKRFNIPTPPSVKKSYGWLVFGRLLAI LIAIIFWLNSDRHAYDVLSALILAWSLMVSWNQLVAFSHGLIGRVIGVCMIIVVAIVYII THHYFFTTLSNVDIHIVSPPRISIILSIAIIVFGSMLSIWVARRRESKAFAKLYLWLIKV GEAKTQSIESHPSYLKRF >gi|224999867|gb|ACJC01000133.1| GENE 106 113750 - 116317 2968 855 aa, chain + ## HITS:1 COG:SA0412 KEGG:ns NR:ns ## COG: SA0412 COG3002 # Protein_GI_number: 15926131 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 855 4 900 901 925 52.0 0 MLQSDINELVNQAKRVITPLSPISTFAARNPWEGLEDASFDQVARWLKSVRDIDIYPNAS TIHRAISNKEIDLKVFEERLDENRAHYNNRSLSDSDINTYIQRAKNLKTIEEGYFNTKDN EKLEKWVQTNFKDYKKKEDVIAQSASVFTKEGTRLIDILNAHMIKWSKLYVDDFQSSWTM PKREKGFYHAWQRLVKHDPLFTKKQRLTLAHLPNQATEAIEYAFQELGVKEEQRQSYIES HLLSLPGWAGIMYHRSQTQSNDAYLLTDYVAIRLSIEMVLLNDHHTTLLKKSIYLQKKLE QIRYLLFNIQMNVEQWLNLSSKKQQAYIELGTRFSPFYFKKLWLDAWEETHERRLVDEIY RVPTEDTDQAKAKVQLAFCIDVRSEPFRRHLESEGPFETIGIAGFFGLPIQKEVLDEQFA HPSLPVMVEPAYRIKEYADQHEMKIYNQQQHTLTSMFYNFKLMKNNVLPSLLLPELSGPF LSIATIANTIFPKKAQRIVHRFSQKWLRKPTGKLTIQREQDAYSKLPIGFTLDEQIQFSK KALQLMDLTDDFAPLIVLCGHGSESHNNPYHASLECGACGGASSGFNAKLLAVMCNQENV RHGLVMEGIDIPRHTVFIAAEHQTSVDELEYIYVPPLTTEAQNAFDELKRVMPKVSYKAN LERLASLPNIKKTDQNPKAEAHRHANDWSEVRPEWGLARNAEFIIGKRQITQNSNLEGRA FLHNYDWTKDEDGEILNTIISGPALVAQWINLQYYASTVAPHYYGSGSKTTQTVTSGVGV MQGNASDLMYGLPWQSVMMNDKEAYHAPIRLLIVIQAPDAYIQRLLKHHDHFRQKVDHQW IRLASIDENNSWKDW >gi|224999867|gb|ACJC01000133.1| GENE 107 116430 - 116798 332 122 aa, chain + ## HITS:1 COG:SA0413 KEGG:ns NR:ns ## COG: SA0413 COG5609 # Protein_GI_number: 15926132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 118 1 118 120 176 80.0 1e-44 MKKTKGIYESEISKAITQWEKDFLGRGSLSVKTDILRDMVIVSLQGILTPAEYRVCKTNE GLLNIKRTRSELVESGEEDLSRIIKDLTGLNVKSFHSDLSTITGERVMIFKLEDRFDKAL HE >gi|224999867|gb|ACJC01000133.1| GENE 108 116840 - 117088 67 82 aa, chain - ## HITS:1 COG:no KEGG:SERP0088 NR:ns ## KEGG: SERP0088 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 82 1 82 82 86 98.0 2e-16 MFTKKILIYIALLITLIRFFIPLHPDFDTLLVWLFILYIVPIILCIIGFKSDKLIATMIM IPNLMGIGYRLFIFFNDFLHLK >gi|224999867|gb|ACJC01000133.1| GENE 109 117394 - 118014 283 206 aa, chain + ## HITS:1 COG:SA0415 KEGG:ns NR:ns ## COG: SA0415 COG0671 # Protein_GI_number: 15926134 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 1 197 17 214 224 164 44.0 9e-41 MIILLSFIATHVLAHNQWLGMVDLSVQEWFSKQFGDPNRVFGHGFINNIMTFCATFGDVK TILIVAILIAVLLMFYKKVQQAIWLIITMTSGALINYLIKQTIERSRPENHLSIDTGWSF PSGHSNINTLFFLMIMIIIIPLIRQRAFKFIITILSIVFWISVLISRLYFHAHYFSDVVG GVSLAIIWVSLFILVSPLLNFLGKSK >gi|224999867|gb|ACJC01000133.1| GENE 110 118117 - 118845 721 242 aa, chain + ## HITS:1 COG:SA0416 KEGG:ns NR:ns ## COG: SA0416 COG1647 # Protein_GI_number: 15926135 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 241 1 241 244 259 51.0 3e-69 MKVKSPQSIYLKGHRQQAVLLLHSFTGTVRDVKHLAQQLNEEGFTCYVPSYPGHGLPLKE FTKHNINDWWEQVTSAYQFLRNEGYSRINVTGVSLGGLFTLRLAEHFNLERIAVMSAPHK KRESEIAWRLERYGHRMNEILSLSEEERRHQMETILSYDKEIEVFQGVIDEIMACLANIT VPVNIMYGDEDDPLYAQSAQYIYDNVNSQDKELLKFEKSGHLMTYGDYAYKVEQSIIQFF SK >gi|224999867|gb|ACJC01000133.1| GENE 111 118860 - 119102 421 80 aa, chain + ## HITS:1 COG:no KEGG:SERP0091 NR:ns ## KEGG: SERP0091 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 80 1 80 80 132 100.0 5e-30 MKRTFLLTYTTVSGKTYTEFKTFENGPDYDTCVSRIIDEFDELAYLYIKKDVVHYINVDH IESLDIEEVTEGQHITYDFE >gi|224999867|gb|ACJC01000133.1| GENE 112 119247 - 120575 1195 442 aa, chain + ## HITS:1 COG:SA0417 KEGG:ns NR:ns ## COG: SA0417 COG0733 # Protein_GI_number: 15926136 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Staphylococcus aureus N315 # 4 442 6 445 446 618 82.0 1e-177 MSGHSQWKTSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLLMFLIFTIFVGLPLLIM EFTVGKMGRTYTTQIYKKLTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIIIYIGYVIAQ IAIFKSSTLTNIQFETIISNPWLTVLGQGIFILITMVIVMLGVEKGLEKASKIMMPLLFI FLIIVVAQSLTLEGALEGVRYILQPRVEDMSIQGVLFALGQSFFTLSLGTTGMITYASYA PKNMTIKSSALSIVVMNILISVLAGLAIFPALKTFGYQPQEGPGLLFKVLPLVFSEMTFG TFFYFIFLLLFLFAALTSSISLLELNVSNFTKNDNSKRQKVAIIGSILVFIISIPATLSF SSLSHLRFGAGTIFDNMDFIVSNILMPLGALGTTLVVGQLLDKKLLKESFGKDKFNLFLP WYYLIKFVMPIVIILVFIVQLF >gi|224999867|gb|ACJC01000133.1| GENE 113 120754 - 121293 346 179 aa, chain - ## HITS:1 COG:no KEGG:SERP0093 NR:ns ## KEGG: SERP0093 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 179 1 179 179 271 98.0 5e-72 MTKQDLSLSVFTNENYKNLRYTSSSFRNSMYDELEVNKSRFKNCNFNEGIFKNIEAICNC KFTTCGFNNCIFEDVHFYKNQFKDSTFVNTPFDQSVFNNTLFQNVMFDSNLIRSVKWTDI IFKNVSFKNVEIEGTTFKDVKFKNCEFKNVIITNSTMSQKLMNELQKQDVTLEDIDTSI >gi|224999867|gb|ACJC01000133.1| GENE 114 121601 - 122509 491 302 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 5 296 9 307 308 193 39 3e-48 MIAYDLIGQTPLVLLESFSDENVKIYAKLEQFNPGGSIKDRLGKYLIEKAIDEGRLKEGD TIVEATAGNTGIGLAIASNRHKVKCIIFAPEGFAEEKISIMKALGADVRRTPKVEGMTGA QQEALAYATRYGYLYMNQFETKDNPGAYTQTLAKQLTDELSHIDYFVAGVGSGGTFTGVA QHLKTYDVKNYIVEPEGSVLNGGVSHPHATEGIGSEKWPSFLEKELVDGIFTVADNDAFN NVKLVANKEGLLVGSSSGAALQGALELKKSIQTGVIVTIFPDGSDRYMSKQIFNYKESFN NE >gi|224999867|gb|ACJC01000133.1| GENE 115 122502 - 123647 1404 381 aa, chain + ## HITS:1 COG:SA0419 KEGG:ns NR:ns ## COG: SA0419 COG0626 # Protein_GI_number: 15926138 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Staphylococcus aureus N315 # 1 380 1 380 380 623 82.0 1e-178 MNKKTQMIHGGHTTDNYTGAVTTPIYQTSTYLQDDIGDLRQGYEYSRTANPTRASLESVI ANLEHGKHGFAFGSGMAAISAVIMLLDKGDHLVLNSDVYGGTYRALTKVFTRFGIDVDFV DTTKIENIEQYIKPETKMLYVETPSNPLLRVTDIKASAKIAKKYDLISVVDNTFMTPYYQ NPLDFGIDIVLHSATKYIGGHSDVVAGLVATADDALAERLGFISNSTGGVLGPQDSYLLI RGIKTLGLRMEQINRNVEGIVQMLQKHPKVQQVFHPSIKEHMNYTIHQNQASGHTGVVSF EVKDTEAAKQVIHATNYFTLAESLGAVESLISVPALMTHASIPSDVRAKEGITDGLIRLS IGIEDTEDLVNDLEQALNTLR >gi|224999867|gb|ACJC01000133.1| GENE 116 123894 - 124919 753 341 aa, chain + ## HITS:1 COG:SA0420 KEGG:ns NR:ns ## COG: SA0420 COG1135 # Protein_GI_number: 15926139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 340 1 340 341 459 69.0 1e-129 MIEFKNVNKVFHKKRETIQALKNVSFKIDQHDIFGVIGYSGAGKSTLVRLVNQLETVSDG QVIVDGHEIDTYKEKDLRHIKKDIGMIFQHFNLLNSKSVYKNVAMPLILSKTNKKEIKEK VDEMLEFVGLADKKDQFPDELSGGQKQRVAIARALVTHPKILLCDEATSALDPATTSSIL NLLSNVNRTFGVTIMMITHEMSVIQKICHRVAVMENGEVIEMGTVKDVFSHPQTNTAKNF VSTVINTEPSKELRASFNSRKDSNFTDYKLFLDSEQIQLPILNELINEHHLNVNVLFSSM SEIQDETVCYLWLRFEHDKYFNDFKLTDYLSKRHIRYEEVI >gi|224999867|gb|ACJC01000133.1| GENE 117 124922 - 125581 617 219 aa, chain + ## HITS:1 COG:SA0421 KEGG:ns NR:ns ## COG: SA0421 COG2011 # Protein_GI_number: 15926140 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Staphylococcus aureus N315 # 1 219 1 219 219 253 86.0 1e-67 MFGSSLDSSQLLQALYETLYMVTVSLVIGALIGIPLGILLVVTRKNGIWSNTILHQVLNP IINILRSIPFIILLIAIVPFTKLLVGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDDG IIEAAKAMGASPLQIIRYFLLPEALGSLILAITTAIIGLIGSTAMAGAVGGGGIGDLALV YGYQRFDTIVIVITVIVLIIIVQIIQTLGNFIARVIRRN >gi|224999867|gb|ACJC01000133.1| GENE 118 125625 - 126470 1065 281 aa, chain + ## HITS:1 COG:SA0422 KEGG:ns NR:ns ## COG: SA0422 COG1464 # Protein_GI_number: 15926141 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 1 280 1 280 280 375 81.0 1e-104 MKKILSFLIVAILVLAACGGNNGKKVTIGVASNDTKAWEKVKELAKKDDIDLEIKHFSDY NVPNKALSDGDIDLNAFQHFAFLDQYKKAHKDTNIEALSTTVLAPLGIYSDKVKNIKDVK KGAQVAIPNDVSNQARALKLLESAGLIKLKKNFGLNGTTKDIESNPKDLKIKAVDAQQTA RALSDVDISVINNGVATKAGKDAKKDPIYLEKASSDAVKPYINVVAVNSKDKDNKTYKKI IELYHSKEAQKALKEDTKDGEKPVDLSKKEIEEIENELAKK >gi|224999867|gb|ACJC01000133.1| GENE 119 126994 - 127968 695 324 aa, chain + ## HITS:1 COG:SA0423_1 KEGG:ns NR:ns ## COG: SA0423_1 COG1388 # Protein_GI_number: 15926142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Staphylococcus aureus N315 # 1 203 1 214 216 197 67.0 3e-50 MQKKYITAIIGTTALSALASTHAQAATTHTVKSGESVWSISHKYGISIAKLKSLNGLTSN LIFPNQVLKVSGSSSRATSTNSGTVYTVKAGDSLSSIAAKYGTTYQKIMQLNGLNNYLIF PGQKLKVSGKATSSSRTKASGSSGRTATYTVKYGDSLSAIASKYGTTYQKIMQLNGLTNF FIYPGQKLKVPGGSSSSSSSNNTRSNGGYYSPTFNHQNLYTWGQCTWHVFNRRAEIGKGI STYWWNANNWDNASAADGYTIDYRPTVGSIAQTDAGYYGHVAFVERVNSDGSILVSEMNW SAAPGNMTYRTIPAYQVRNYKFIH >gi|224999867|gb|ACJC01000133.1| GENE 120 128095 - 129600 1050 501 aa, chain - ## HITS:1 COG:SA0523 KEGG:ns NR:ns ## COG: SA0523 COG0438 # Protein_GI_number: 15926243 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 112 471 80 463 496 122 26.0 2e-27 MIYTVTTTLPLSHGGRTQALLRRIKLLDEEFKIPSKILTTNYHGNYPSIYKKYRQENKVT ENIQFENMYEWLSNFKLFKVPKTLITRNPKYIKTPRKIKGLIDRRGKKSGLIHYYNNECH VRSRKYYGQSNVLEYEDFISPTSGLKYERHQYNLYGQLHRKEYYYDDSSLKHSDELFDTE GSMYCKRYFKTKPNSKINGVEIYRNKKLYKTFKNDKLLAQFYFQNRFKDQDIVFNDARFL DKPLLKQTHRTKNILVLHSSHLSGDQIKKSYRFALNQSKNVYKYIVLTHQQKHDIQQHLP ISDDQFQLVPHFIELDTEVEQDSSNNQNRFIYIGRFSAEKQIDHIIRAYHKFLQSGYQTE LHLFGRDEDNQIPLMNTLISELKLSDKVKIFKYTNQPLQEFKNSKASLLTSQYEGFGLTL MESIEMGCPVLSYNVRYGPSEIIQNGINGYLIEKNDIDSLSKHMINIIEHPLQEVKNKDT LKYNAAVNNYKQLMQSLDLLK >gi|224999867|gb|ACJC01000133.1| GENE 121 129974 - 130252 411 92 aa, chain - ## HITS:1 COG:no KEGG:SERP0102 NR:ns ## KEGG: SERP0102 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 92 1 92 92 156 98.0 2e-37 MAKQANTSRLSRLFNVAGFIVDGYNGIRYNAKNKQLVYLSLGLSALGTIIDFYISIKSAS KLRKLSALGSFAINGVRLFTSFKKVRDEYDYH >gi|224999867|gb|ACJC01000133.1| GENE 122 130440 - 130826 502 128 aa, chain + ## HITS:1 COG:SA0425 KEGG:ns NR:ns ## COG: SA0425 COG0494 # Protein_GI_number: 15926144 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 1 125 1 125 131 157 63.0 3e-39 MIKCVCLVEEKNHQLLLVQVRHRDKYYFPGGKIDEGESLVEALQRELKEELRLELAKDEL EFIGTIVGKAYPQPNMLTELNGFKVNRTIDWSKVETDHEITDMKWFDINDSENIAPAVNT WIKEFIND >gi|224999867|gb|ACJC01000133.1| GENE 123 131338 - 132123 557 261 aa, chain - ## HITS:1 COG:SA0427 KEGG:ns NR:ns ## COG: SA0427 COG5438 # Protein_GI_number: 15926146 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 1 253 1 253 260 299 77.0 3e-81 MSAITILGFLLLLIMVIFGGKKGLISFFTLFLNFIILVISILLIIYGVPIYLVTFIFCFI IAAINLFVLNSYNVKTQAAFLGTLATILILILMIYFSVEMGHLQGFATEQQDETYVYSMN IGINMVQFMVFTIVLAVIAAVIDLAITISSPMYELNETNPNLNQHQLFQSGMRVGREILA TSANTIYLAFFGGQLTLFFWFFKLHYSFGHIINSKIFTQEFIAILLGGIAVAISIPITAW ITAFMIKHVSQKKTLTNQQNK >gi|224999867|gb|ACJC01000133.1| GENE 124 132120 - 133121 809 333 aa, chain - ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 2 333 39 370 370 436 73.0 1e-122 MPIGQITQITDIQSQKVTDEHKNKDIKYKEKLTFKILNGEFKGQTTTIPHQYVKSQADSE SFSKNDKVVLHISKNPKDATIIEKKRDTIVVIITGLFLLTVLVVGKKVGLQSILSLIVNT ITVMGAILIHNQYGTISLFLLMTCAIIISTSFTLLLVTGWHTRTLITIVSTLIGTFLCVG ITEVIIKFTGGNGIKYETITFLTLPPKDVFLASVLIGTLGAVMDVSITIASGMYEILQRS PQISMKRWALAGRHIGQDIMGTMTNILLFSYLSGSLPMFLIYLKNANTITYTISMNWSLE IARALTGGIGIVLTIPITIALMELWLKLRGVNQ >gi|224999867|gb|ACJC01000133.1| GENE 125 133369 - 134250 680 293 aa, chain - ## HITS:1 COG:SA0429 KEGG:ns NR:ns ## COG: SA0429 COG0583 # Protein_GI_number: 15926148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 293 1 293 294 281 50.0 1e-75 MDIKQLRYFVEVARREHISDAALELNIAQSAISRQITQLEKELGVTLFKRSGRNIILTVE GRQLLSQATQILELMDKTIHSFQQHASHNQQTIYIGYEESDASQMILPLIQTFEQQSNST MIPQLTIHDKLLDQILSNQLDIAITEFTPVLERETHLRVMPLFEENYHMYVPKSHPLAMT IHPPLSQFTNQSLYCLEPMTNSIKSKLIEKTKAQVRMISDMKLAQHILSNDKGFIISSQN CLLYNHVNWTKIPLNHTELKRTLCVVMRKDNKKNDINVAWDLIYKLLNKSNIY >gi|224999867|gb|ACJC01000133.1| GENE 126 134442 - 138938 4527 1498 aa, chain + ## HITS:1 COG:SA0430_2 KEGG:ns NR:ns ## COG: SA0430_2 COG0069 # Protein_GI_number: 15926149 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Staphylococcus aureus N315 # 382 1194 1 813 813 1359 81.0 0 MYNEKLKKGLYDYREEHDACGIGFYANMDNKRSHDIIEKSLEMLRRLDHRGGVGADGITG DGAGIMTEIPYQLFEQLTEFKVPGEGYYAVGLFFSKEKVRDSIHEEMFNQYFESEGFKVI GYRDVPVDTRAIAQHVADTMPYIQQVFVDITGVNEVEKRLFLARKQIEKYSETQSIDLYF TSLSHRTIVYKGWLRSDQIKGLYLDLQNEAYQSKLGLVHSRFSTNTFPSWKRAHPNRMLM HNGEINTIKGNVNWMRARQNKLVETLFEDEKDKVHFIVDEDGSDSSIVDNALEFLSLAME PEKAAMLLIPEPWLYNESNDKKVRSFYEFYSYLMEPWDGPTMISFCNGDKIGALTDRNGL RPGRYTITKDNFIVFSSEVGVIDVPEENVAFKGQLNPGKLLLVDFLQNKVVENNELKTNI ANELPYEQWLKDYKNQNDLDNIYYQSSDWDDQTLFRLQKQFAYTKEDINKYMTDLVINKK DPIGAMGYDAPIAVLNDKPESLFNYFKQLFAQVTNPPIDAYREKIVTSELSYLGSEGNLL CPDESVLERIQLKKPVLNEAQLSSIDHSYFNVTYLSTLYTDDLESSLTELGNRAIQAVHE GAKILVLDDTSLTHENSYAMPILLALSHVHQLLIREGLRMETSLIAQSGETREVHHVACL LGYGANAVVPYLAQRTIEQLTRQGQLSGNVAENVATYTNVLSEGVIKVMAKMGISTVQSY QGAQIFEAVGLSNSVIEKYFTGTQSKLSGISIEQIDQENKARQSDDSDYLESGSVFQWRQ QGQHHAFNPRTIFLLQHACRENDYELFKKFSKAVNLKRTDHIRHLLEFKTRQTIDISRVE PASEIVKRFNTGAMSYGSISAEAHETLAQAMNQIGGKSNSGEGGEDSSRYEIQKDGSNKI SAIKQVASGRFGVTSDYLQHAKEIQIKVAQGAKPGEGGQLPGSKVYPWIAETRGSTPGIG LISPPPHHDIYSIEDLAQLIHDLKNANRRADIAVKLVSKTGVGTIASGVAKAFADKIVIS GYDGGTGASPKTSIQHAGLPWEIGLAETHQTLKLNDLRSRVKLETDGKLLTGKDVAYACA LGAEEFGFATAPLVVLGCIMMRVCHNDTCPVGVATQNKDLRALFRGKAQHVVNFMYFIAE ELREILASLGLETVEELVGRTDLLQRSTQLKPNSKAASLQIERLIEQFDGVNTKEISQNH HLDEGFDLNYLYPDARYSIENGHSFTGNYVVNNEQRDVGVITGSAIAKQYGEEGLPEDTI LAYTEGHAGQSLAAYAPRGLTIHHTGDANDYVGKGLSGGTVIVNAPNSQRENEIIAGNVN FYGASRGKAFINGKAGERFCIRNSGADVVVEGVGDHGLEYMTGGHVIILGDVGKNFGQGM SGGVSYIFPSDVETFKKVNALETLEFSSIRFDEEKSLIKDMLEAHFKHTRSNKARQILDQ FDNIEKLAIKVIPKDYKLMMQKIDLKKRQMEREDEATLAAFYDDRETIEQELQPAVIY >gi|224999867|gb|ACJC01000133.1| GENE 127 138956 - 140419 1541 487 aa, chain + ## HITS:1 COG:SA0431 KEGG:ns NR:ns ## COG: SA0431 COG0493 # Protein_GI_number: 15926150 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Staphylococcus aureus N315 # 1 487 1 487 487 858 81.0 0 MGEFKGFMKYDKQSLSELSLVDRLSNHEAFQQRFTKEDASIQGARCMDCGTPFCQTGQSY GRETIGCPIGNYIPEWNDLVYHQDFKAAYERLRETNNFPEFTGRVCPAPCEQSCVMKINR ESVAIKGIERTIIDEAYENKWVHPAYPEERKDQRVAIVGSGPAGLTAAEELNLKGYKVTV YEKAHEPGGLLMYGIPNMKLDKDVIRRRVSLMKDAGILFKTGVEIGVDVSRETLEENYDA IILCTGAQNARDLPLEGRMGSGIHFAMDYLTEQTQYLNGEIESLSITAKDKNVIIIGAGD TGADCVATALRENCKSIVQFNKYTKQPEEITFESNTSWPLAMPVFKMDYAHKEYEAKFGQ EPRAYGVQTMRYDVDELGNVKGLYTQILKETPDGMVMEDGPERFWPADLVLLSIGFVGTE TTVPHAFDIHTERNKIVANDTNYQTSHAKIFAAGDARRGQSLVVWAIKEGREVAQSVDQY LSKKVLV >gi|224999867|gb|ACJC01000133.1| GENE 128 141713 - 142267 595 184 aa, chain + ## HITS:1 COG:SA0435 KEGG:ns NR:ns ## COG: SA0435 COG3153 # Protein_GI_number: 15926154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Staphylococcus aureus N315 # 9 181 1 171 174 155 51.0 5e-38 MAYYNGGYMHIYLSTLTEVDYETSLNSIENNYNLNPESSWQDRARVKNLRKLESYNYELE VIAKNELNEVIGHVVLAEVKLSSKNKKAIALAIGALSVDKSIRNQGLGQALLKAVEERAK EQGYCAIFVNNHPQYFEKSDYEAAHLYNIHIEEKRNDQTLLVKFLKPVQNEWSGMTVYYP EVLD >gi|224999867|gb|ACJC01000133.1| GENE 129 142359 - 144041 1425 560 aa, chain + ## HITS:1 COG:SA0436 KEGG:ns NR:ns ## COG: SA0436 COG2812 # Protein_GI_number: 15926155 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Staphylococcus aureus N315 # 1 560 9 565 565 829 80.0 0 MYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSD NGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEV HMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSDQIIDRLK YVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVTGSVDEAA LNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNESVHFESLI HFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEMIKTQPQTVQNVATASVANE PDNEMLLQRLEQLENELKTLKEQGIKANKVNKQPKKPTRTIQRSKNAFSMQQIAKVLDKA NKDDIKLLKNHWQEVIDHAKSNDKKSLVSLLLNSEPVAASEDHVLVKFDEEIHCEIVNKD DEKRNNIESVVCNIVNKTVKVVGVPADQWLRVRAEYLQNRNTNETHQSEKQSTQQSQQID IAQKAKDLFGEETVHLVDED >gi|224999867|gb|ACJC01000133.1| GENE 130 144130 - 144447 191 105 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 5 103 9 107 114 78 38 2e-13 MRGGGNMQQMMKQMQKMQKKMAQEQEKLKEERVAGTAGGGMVTVTVTGHKEVVDVEIKEE AVDPEDVEMLQDLVLAATNEAMNKADELTQQRLGKHTQGLNIPGM >gi|224999867|gb|ACJC01000133.1| GENE 131 144454 - 145050 579 198 aa, chain + ## HITS:1 COG:SA0438 KEGG:ns NR:ns ## COG: SA0438 COG0353 # Protein_GI_number: 15926157 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 198 1 198 198 385 97.0 1e-107 MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVKFAKALVDVKRELTYCSVC GHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPE DINIPALVERLKNDEVKELILAMNPNLEGESTAMYISRLVKPIGIKVTRLAQGLSVGGDL EYADEVTLSKAIAGRTEM Prediction of potential genes in microbial genomes Time: Sun May 29 07:59:39 2011 Seq name: gi|224999866|gb|ACJC01000134.1| Staphylococcus epidermidis W23144 contig00177, whole genome shotgun sequence Length of sequence - 385 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 385 199 ## COG4485 Predicted membrane protein Predicted protein(s) >gi|224999866|gb|ACJC01000134.1| GENE 1 1 - 385 199 128 aa, chain + ## HITS:1 COG:BS_yfhO KEGG:ns NR:ns ## COG: BS_yfhO COG4485 # Protein_GI_number: 16077927 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus subtilis # 9 128 635 753 819 57 31.0 5e-09 KNIRDKYKDFYLTMNIERGEPDSNYTVSINQYHNHRLYNDSIYRTGISKVLYRCLPDKNG DITIQLSPNGKFNLELLELNGENYDTLKQAHHHANFNMCYKDIKNGVKVNLDHHSKGLAV INIPYRKG Prediction of potential genes in microbial genomes Time: Sun May 29 07:59:39 2011 Seq name: gi|224999865|gb|ACJC01000135.1| Staphylococcus epidermidis W23144 contig00178, whole genome shotgun sequence Length of sequence - 238 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 2 - 77 95.7 # Val TAC 0 0 + 5S_RRNA 8 - 59 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 84 - 159 92.9 # Thr TGT 0 0 + TRNA 166 - 238 89.9 # Lys TTT 0 0 Predicted protein(s) Prediction of potential genes in microbial genomes Time: Sun May 29 07:59:40 2011 Seq name: gi|224999864|gb|ACJC01000136.1| Staphylococcus epidermidis W23144 contig00179, whole genome shotgun sequence Length of sequence - 1918 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 15 - 413 497 ## gi|242243369|ref|ZP_04797814.1| hypothetical protein HMPREF0791_1895 2 1 Op 2 . + CDS 413 - 1786 1018 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins + Term 1869 - 1907 -0.9 - Term 1434 - 1472 2.0 3 2 Tu 1 . - CDS 1663 - 1917 63 ## Predicted protein(s) >gi|224999864|gb|ACJC01000136.1| GENE 1 15 - 413 497 132 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243369|ref|ZP_04797814.1| ## NR: gi|242243369|ref|ZP_04797814.1| hypothetical protein HMPREF0791_1895 [Staphylococcus epidermidis W23144] # 1 132 1 132 132 228 100.0 9e-59 MAMKHLKEFRQFDLDGFLKDKIITVSDIKQSIEYSDGKPTDNIKGTTIVCIIKRDNTKYK GNENKANYEVKTNEDNKFNVKIPSTDIVEIYNRLPKNKPVKLLGVKNANVWGNFQNELSV ECDDVVLIEQKV >gi|224999864|gb|ACJC01000136.1| GENE 2 413 - 1786 1018 457 aa, chain + ## HITS:1 COG:CAC1871 KEGG:ns NR:ns ## COG: CAC1871 COG1674 # Protein_GI_number: 15895146 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Clostridium acetobutylicum # 219 434 178 395 405 99 29.0 2e-20 MVTTKTVSKRINLRRKWIGIFVIFPFSLTFAFFVIRCILIKRFDINLPLLNYILIILCVY HVVSVIISFLTVIFDGGFVKHHNILLSIKYHNLKNKIDVAFLKSGIYNQLKNIADNEKIA ETPKVKILGDTEIHIENLVGQTDKLEKFKPVLSALLDGGLVCETLDLDMTQKFFIAILID LSDENQKIIQNHEEFLNYVKDETSYQLKIMPNFIKDVSKSPHLLIAGETGSGKSYFLYFL IFQLVIKNADVYVIDRKKVITKFKSIIGAENVASEIDSIMQLLEEVYKETKRRESILEKD YPENMDIDFTSVGFNPFYLVIDELGSLIAELNNKQKKAFNDKLQTIAQRGRATGVNIIIA MQHPSHDNLPTSIRSQLTFKTILGNTDDSTRHLLFKADDMANIKFKKGQGYFTNSGTHNK ASILFVPTFKFELNINNLKELIVLNSSRNEHKKNEST >gi|224999864|gb|ACJC01000136.1| GENE 3 1663 - 1917 63 84 aa, chain - ## HITS:0 COG:no KEGG:no NR:no KKGTSKNFRHSPVELRGIAGAISGNSFWRVCKTSQLLNSHFVAIYVDSFFLCSFLLEFNT ISSFKLFIFNSNLKVGTNKIDALL Prediction of potential genes in microbial genomes Time: Sun May 29 07:59:52 2011 Seq name: gi|224999863|gb|ACJC01000137.1| Staphylococcus epidermidis W23144 contig00180, whole genome shotgun sequence Length of sequence - 1265 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 563 - 596 5.4 1 1 Tu 1 . - CDS 604 - 1248 586 ## SGO_2075 plasmid replication protein Predicted protein(s) >gi|224999863|gb|ACJC01000137.1| GENE 1 604 - 1248 586 214 aa, chain - ## HITS:1 COG:no KEGG:SGO_2075 NR:ns ## KEGG: SGO_2075 # Name: not_defined # Def: plasmid replication protein # Organism: S.gordonii # Pathway: not_defined # 29 211 6 187 204 96 34.0 7e-19 MWLWQYKNRKNVFGGNYSMVNKASQDKVRTRNWTFVIYPESVFQNWRDVLDNEYIQWVES PLHDKDTNPDGEIKKAHKHILVMYDGVKSYNQILELTEKINATVPQKCGSAKGLVRYMLH MDNPEKYQYNREDMVAHGGADIAEMLKPTSASRYEMFKEMTSFIVENDIREYEDLWIYAM ENRFDDWFPLLADNGTFAINTFIKSRRHRIKDKD Prediction of potential genes in microbial genomes Time: Sun May 29 07:59:56 2011 Seq name: gi|224999862|gb|ACJC01000138.1| Staphylococcus epidermidis W23144 contig00181, whole genome shotgun sequence Length of sequence - 1742 bp Number of predicted genes - 2, with homology - 1 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 203 - 251 -0.8 1 1 Tu 1 . - CDS 312 - 473 83 ## - Prom 531 - 590 8.8 2 2 Tu 1 . - CDS 879 - 1049 167 ## gi|242243376|ref|ZP_04797821.1| hypothetical protein HMPREF0791_1902 - Prom 1090 - 1149 10.3 Predicted protein(s) >gi|224999862|gb|ACJC01000138.1| GENE 1 312 - 473 83 53 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKELILSVLIFIIVFLVLKFSDYIFLAEIYYLKNVFSTLIITIFIMCIFGRD >gi|224999862|gb|ACJC01000138.1| GENE 2 879 - 1049 167 56 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243376|ref|ZP_04797821.1| ## NR: gi|242243376|ref|ZP_04797821.1| hypothetical protein HMPREF0791_1902 [Staphylococcus epidermidis W23144] # 1 56 1 56 56 68 100.0 1e-10 MNISKGFVKAIWFIICVILVIILGNNYKFVEMFLTVTLGIIGFILIEIFYKKKNGD Prediction of potential genes in microbial genomes Time: Sun May 29 08:00:05 2011 Seq name: gi|224999861|gb|ACJC01000139.1| Staphylococcus epidermidis W23144 contig00182, whole genome shotgun sequence Length of sequence - 3935 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 15 - 74 3.8 1 1 Tu 1 . + CDS 106 - 666 311 ## SAVP033 hypotehtical protein - Term 929 - 974 13.2 2 2 Tu 1 . - CDS 989 - 1702 769 ## SEA0001 replication-associated protein - Prom 1739 - 1798 10.1 + Prom 1841 - 1900 7.7 3 3 Tu 1 . + CDS 2088 - 3044 957 ## SEA0033 replication-associated protein RepA + Term 3056 - 3093 4.0 - Term 3417 - 3472 6.1 4 4 Tu 1 . - CDS 3479 - 3934 376 ## gi|242243382|ref|ZP_04797827.1| hypothetical protein HMPREF0791_1908 Predicted protein(s) >gi|224999861|gb|ACJC01000139.1| GENE 1 106 - 666 311 186 aa, chain + ## HITS:1 COG:no KEGG:SAVP033 NR:ns ## KEGG: SAVP033 # Name: not_defined # Def: hypotehtical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 186 1 186 186 249 100.0 3e-65 MNRADIFKIFDVELNITIFLGALVATFIYFISYMNNVNELITLCLTLAFPAYLLKISRSF EVILLEEKIKNSKIKICDKDRIEREILVKKNLIDELLFPNRVIKKYTLTILIYSIGIIIL LLLCNMLSYGIGENVNFIWRLLACYVTSVTVIIVALIIMIMIFDLIIGLLLNFQIFLKNK KYDDFL >gi|224999861|gb|ACJC01000139.1| GENE 2 989 - 1702 769 237 aa, chain - ## HITS:1 COG:no KEGG:SEA0001 NR:ns ## KEGG: SEA0001 # Name: not_defined # Def: replication-associated protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 237 1 245 245 167 71.0 2e-40 MKSVKQISEELEVSKQTVFNNIKRLNIETIKQDNTSFIKNDVDVEKVIQRVIRNKKKYGF ESTNTSSEKVKIDNTKNESKYDVQIIELLEKQIDTLNKQLEKQEKRHETTIEFYRKELQE RSKLLENQQVLALESNKKIQKLESKLEEEKQLNYSANKRQDIEVQETMDNMDSINSDSDN QKEKIVSQFSDESKDKHEDKQQDSESQKSDKTDGDQKEDIRNENYSKKSFWSRLFGN >gi|224999861|gb|ACJC01000139.1| GENE 3 2088 - 3044 957 318 aa, chain + ## HITS:1 COG:no KEGG:SEA0033 NR:ns ## KEGG: SEA0033 # Name: repA # Def: replication-associated protein RepA # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 318 27 344 344 501 94.0 1e-140 MSRKNIKNQASQNFYMLHKALFVNEKYKKLSDSAKVTYAILNDRVSLSIKNNWIDDNGDI YFIFTNESLQNILDKSKNTITKIKKELQEVGLLEQIRTGFNKPNKLYLHDIETNISVEKS IQSSSTTYNDKESQILGLQNPEIWDSRISKFGTPESQILDPNDTDYIKTDYIKTENNDTD DLNDNKLKYPSNHTNHSNHNNSNFNNEALKFQLLEELPQSIQNYLSNFEVAEIKIIKTVL LKAKTSFNNTIDNYYLLEDMEIEILHVLKRFKAMLIQKNETIEAMQGYLMKSLKSEFAEM HTLNKRRDHLPITSLFNQ >gi|224999861|gb|ACJC01000139.1| GENE 4 3479 - 3934 376 151 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243382|ref|ZP_04797827.1| ## NR: gi|242243382|ref|ZP_04797827.1| hypothetical protein HMPREF0791_1908 [Staphylococcus epidermidis W23144] # 1 151 1 151 151 265 100.0 1e-69 IENFRRHWGYNQEFTNTISSIKNMKIPNIDVLTEIINDNGIVKMGDIKVTSETIITNDNY VERYPDEHQNQSTEIASKEKVEYLTTKLFEPLCNAIVKINESTLPTTSNLTYQLYLHNND WYTFFMMITTIQLIIYVACYEPKKKEDEKIK Prediction of potential genes in microbial genomes Time: Sun May 29 08:00:24 2011 Seq name: gi|224999860|gb|ACJC01000140.1| Staphylococcus epidermidis W23144 contig00183, whole genome shotgun sequence Length of sequence - 2811 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 246 156 ## gi|242243383|ref|ZP_04797828.1| hypothetical protein HMPREF0791_1909 - Prom 410 - 469 13.1 + Prom 230 - 289 10.5 2 2 Tu 1 . + CDS 413 - 2323 1299 ## gi|242243384|ref|ZP_04797829.1| hypothetical protein HMPREF0791_1910 + Term 2339 - 2371 -0.9 Predicted protein(s) >gi|224999860|gb|ACJC01000140.1| GENE 1 3 - 246 156 81 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243383|ref|ZP_04797828.1| ## NR: gi|242243383|ref|ZP_04797828.1| hypothetical protein HMPREF0791_1909 [Staphylococcus epidermidis W23144] # 1 81 1 81 82 103 100.0 3e-21 MTGDDIVNQALINYQKTMAMVKNNTQLQRNVFTTTNYLNSSEYRKLMSNDIFKSTSIELT EKLRKAFKVSNNFNEISQLNT >gi|224999860|gb|ACJC01000140.1| GENE 2 413 - 2323 1299 636 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243384|ref|ZP_04797829.1| ## NR: gi|242243384|ref|ZP_04797829.1| hypothetical protein HMPREF0791_1910 [Staphylococcus epidermidis W23144] # 1 636 1 636 636 1136 100.0 0 MNYTITELSLRNPNYLGISRELFINDKYCNLSFLAKILYSILSKLQFRNGYDEWTLNMRK LESESKLVAEDIEQYLIDLEELDLIFTAGDKIVVLQQRELAKKGIYKMPSFLLKDAFDDL DWYAKILYTIYRNRYLFAIKENMGNSDFYNDEHILYGIYKIKDIVNELMIDEETVEMYNE QLIHAHLLNTSTTTNGYLRFYTYDVSSVPKQSNTKTTHHEKQKLIKYMPSKIAFIFQTMD IEHILKIQHAMRSYIAHYNINNPNRYLRKHADGISKIIQTMALVGDTDNKDVYTKHNLCF YVFNNEMKRYLDNPNHFKTNKSQINYHIDIFNSMMSTILSDLKINKNDSFKIKRLQNTFP EFQKSTISLLRLFTFNDAIFLGNTLRDIIEINNISNIDLTPDNLFSYSDNMSSINIAICE VKGLLILADLEFSHIAPFLNDMLFDRFNTYYDWTTTDIGIDIEKQYAELEKGNNSYSFSE ETSYMVQLLIQLTNCNESEENTQAIQRVLYLFSGFHRSILPLKLEKYMLSLKLSDFIYVF RMFSLGIADYTLSMKYKMNLFHVDLSLLEDRLLRCIDIILHVKNSTKLNDNTNICISIVS GEISKSYQDGHQYEYVKHTETEITNLINEYLEEEKQ Prediction of potential genes in microbial genomes Time: Sun May 29 08:00:49 2011 Seq name: gi|224999859|gb|ACJC01000141.1| Staphylococcus epidermidis W23144 contig00184, whole genome shotgun sequence Length of sequence - 2665 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 1, operones - 1 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . - CDS 3 - 279 177 ## SLGD_00641 hypothetical protein - Prom 301 - 360 2.7 2 1 Op 2 . - CDS 378 - 854 445 ## gi|242243386|ref|ZP_04797831.1| SAP domain protein 3 1 Op 3 . - CDS 838 - 1509 549 ## USA300HOU_2140 SAP domain-containing protein Predicted protein(s) >gi|224999859|gb|ACJC01000141.1| GENE 1 3 - 279 177 92 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00641 NR:ns ## KEGG: SLGD_00641 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 92 1 92 202 87 52.0 2e-16 MFKIQDQNYFKRALKTFILSTALLLVTIPIALIFHPSEEFIKQLGSSSPESVSKTQGLKK VWGFIQNNGFHVPIQMLLLALIPIPFLYTINL >gi|224999859|gb|ACJC01000141.1| GENE 2 378 - 854 445 158 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243386|ref|ZP_04797831.1| ## NR: gi|242243386|ref|ZP_04797831.1| SAP domain protein [Staphylococcus epidermidis W23144] # 1 158 1 158 158 214 100.0 1e-54 MMKEDKSLKYESIKTVVKNYIKYDTFVNTYEILIIDLNYSIDELVSMFKEDISEYENELS NELIYHFISFIVAYTLEENETESVSKLYKWLKNEYPYKHTDEDYEDNYDDGFISIDIQEL MKIKEDINVHINKYDGRIILYLKEERLSTFLSENDHEY >gi|224999859|gb|ACJC01000141.1| GENE 3 838 - 1509 549 223 aa, chain - ## HITS:1 COG:no KEGG:USA300HOU_2140 NR:ns ## KEGG: USA300HOU_2140 # Name: not_defined # Def: SAP domain-containing protein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 222 1 225 378 130 37.0 4e-29 MNLNTDDLITLHTNINRQVGKEIFPSGLRAYGEKSILKSIQKLIEDDKLVIKKDVENSLN YFTVSQLRELLKNNNLPISGTKPKLIQRVKENFGSIQNIELPSYYDATDEGIFLIRDTKY LMHFITSWDHISYKQAFYIAEHYIDNTCEDKILAIYDYKLSKKDNNNDLMAIYRALCDYY LNEKKDLDNSRKYLNLIYYDHLKTLINTLDSDSIYNSYYDERR Prediction of potential genes in microbial genomes Time: Sun May 29 08:01:02 2011 Seq name: gi|224999858|gb|ACJC01000142.1| Staphylococcus epidermidis W23144 contig00185, whole genome shotgun sequence Length of sequence - 793 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 580 208 ## COG4485 Predicted membrane protein - Prom 629 - 688 3.8 Predicted protein(s) >gi|224999858|gb|ACJC01000142.1| GENE 1 1 - 580 208 193 aa, chain - ## HITS:1 COG:SA1085 KEGG:ns NR:ns ## COG: SA1085 COG4485 # Protein_GI_number: 15926825 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 193 1 193 868 211 60.0 6e-55 MIKNIWNKPMKRFTLIVLLSCILSFILYGPFLYQFITKGIVFSGSGDGFRQMMPFQMYLY EHFTSLKGFYDASFGLGGDYVKSLAYYYSLSPLMWINFSMIWILEQTINLNPHDISFWPI NQLIMAYVRTVITFIFSFYLFNYLRLKPAPLFIATILYGMSTVVTYYNFTWSFYGNLLIM LPMSIWAIERFFK Prediction of potential genes in microbial genomes Time: Sun May 29 08:01:03 2011 Seq name: gi|224999857|gb|ACJC01000143.1| Staphylococcus epidermidis W23144 contig00186, whole genome shotgun sequence Length of sequence - 297 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 240 239 ## COG3666 Transposase and inactivated derivatives Predicted protein(s) >gi|224999857|gb|ACJC01000143.1| GENE 1 3 - 240 239 79 aa, chain - ## HITS:1 COG:SAS055 KEGG:ns NR:ns ## COG: SAS055 COG3666 # Protein_GI_number: 15927497 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 14 66 1 57 57 73 75.0 1e-13 MYKDYNMAQLILPMETSVLIPTNDISRHVNDIVEIPKTEFRHHRGATSYYPKMMLKVVQY AYTQSVFSDRKIDVDPVFR Prediction of potential genes in microbial genomes Time: Sun May 29 08:01:04 2011 Seq name: gi|224999856|gb|ACJC01000144.1| Staphylococcus epidermidis W23144 contig00187, whole genome shotgun sequence Length of sequence - 311 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 310 259 ## SH2426 hypothetical protein Predicted protein(s) >gi|224999856|gb|ACJC01000144.1| GENE 1 1 - 310 259 103 aa, chain - ## HITS:1 COG:no KEGG:SH2426 NR:ns ## KEGG: SH2426 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 100 1527 1625 1855 65 54.0 6e-10 QDHVTVPVTTNPEKDVIAPDAPTINQPSVGDKTISGKGEPGSTITVTFPDGSTTTGKVDG NGDWTVTVPDEITLHEGDKITAISTDDSGNKSNPTDTTVVDHD Prediction of potential genes in microbial genomes Time: Sun May 29 08:01:07 2011 Seq name: gi|224999855|gb|ACJC01000145.1| Staphylococcus epidermidis W23144 contig00189, whole genome shotgun sequence Length of sequence - 1780 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 303 - 348 7.0 1 1 Op 1 . - CDS 388 - 1089 657 ## SERP2013 hypothetical protein 2 1 Op 2 . - CDS 1116 - 1778 850 ## COG1929 Glycerate kinase Predicted protein(s) >gi|224999855|gb|ACJC01000145.1| GENE 1 388 - 1089 657 233 aa, chain - ## HITS:1 COG:no KEGG:SERP2013 NR:ns ## KEGG: SERP2013 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 233 1 233 233 231 98.0 1e-59 MKRTDKYRDSYKYDDQYQNHRKRSEEDMYHQHQESQQRANSNRATQSKNEREYENHPERY YNGRDYRREQQLEEENEKSSKTKKWLIAIIVILLIIVAIFITRAIINHNNDKVSNDPNVS QNYKKEVENQNDDINRQVDSAKSDIKNKKDTQSQIDKLQNQIDQLKQNEETNADSKFTKF YQNQIDKLKNANNAQLNNENQSKVNNMLEDINTKFDSIKAKLENILNGSNSGN >gi|224999855|gb|ACJC01000145.1| GENE 2 1116 - 1778 850 220 aa, chain - ## HITS:1 COG:SA2220 KEGG:ns NR:ns ## COG: SA2220 COG1929 # Protein_GI_number: 15928010 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Staphylococcus aureus N315 # 5 216 169 380 380 225 58.0 4e-59 IRDGGLALSQIEYIDITRINPRLKDVNIKVACDVTNPLLGDNGATIVYGPQKGAQQKMIP KLDSALRHYHDKIERELNVNVKDIPGAGAAGGMGTALIAFLNAELRPGIDVVLEETQFKQ RIKDANLVVTGEGKMDKQTIYDKTPIGVAKVAKSYDIPVIAICGSLGKDYEAIYHHGIDS VFSIMERPCHIDEALKEAEIHIKHTTANIARLLQLKIKND Prediction of potential genes in microbial genomes Time: Sun May 29 08:01:11 2011 Seq name: gi|224999854|gb|ACJC01000146.1| Staphylococcus epidermidis W23144 contig00190, whole genome shotgun sequence Length of sequence - 989 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 6 - 869 796 ## COG5527 Protein involved in initiation of plasmid replication - Prom 895 - 954 12.4 Predicted protein(s) >gi|224999854|gb|ACJC01000146.1| GENE 1 6 - 869 796 287 aa, chain - ## HITS:1 COG:SAP027 KEGG:ns NR:ns ## COG: SAP027 COG5527 # Protein_GI_number: 16119227 # Func_class: L Replication, recombination and repair # Function: Protein involved in initiation of plasmid replication # Organism: Staphylococcus aureus N315 # 1 286 1 286 286 378 75.0 1e-105 MSGETVIYKNEMNLVPLRRFTATEINLFFAMCNKLKEQDTNTLHLSFDELKELSNYSPET RNINRFVDDLQRVYDKMLDIRYTIRTETKIKKFVLFYKYEIDISEKYLEIATSPDLKYIL NSITDNFTKFELKEMTHLKSTYSKNMFRLLKQYKHTGYMKIKIEDFRERLDIPESYRMSN INQFVLTPIIKELSPIFSNLNINKIKAKKGRKIEWLEFTFDAEKRIHSKRQPQMANIGKS QQYISREKTPKWLEERTYEKPTQNEYDPQLEKEREAFLKQLQVDWEE Prediction of potential genes in microbial genomes Time: Sun May 29 08:01:14 2011 Seq name: gi|224999853|gb|ACJC01000147.1| Staphylococcus epidermidis W23144 contig00191, whole genome shotgun sequence Length of sequence - 10717 bp Number of predicted genes - 8, with homology - 8 Number of transcription units - 2, operones - 1 average op.length - 7.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 251 315 ## gi|242243396|ref|ZP_04797841.1| hypothetical protein HMPREF0791_1922 + Term 308 - 345 -0.9 + Prom 254 - 313 4.8 2 2 Op 1 . + CDS 386 - 1579 822 ## COG0201 Preprotein translocase subunit SecY 3 2 Op 2 . + CDS 1593 - 3149 1375 ## SH0328 hypothetical protein 4 2 Op 3 . + CDS 3142 - 4686 1212 ## SH0329 hypothetical protein 5 2 Op 4 . + CDS 4688 - 5194 324 ## SH0330 hypothetical protein 6 2 Op 5 2/0.000 + CDS 5216 - 7606 2125 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 7 2 Op 6 . + CDS 7625 - 9136 1373 ## COG0438 Glycosyltransferase 8 2 Op 7 . + CDS 9129 - 10469 855 ## SERP2274 hypothetical protein + Term 10580 - 10626 13.1 Predicted protein(s) >gi|224999853|gb|ACJC01000147.1| GENE 1 3 - 251 315 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243396|ref|ZP_04797841.1| ## NR: gi|242243396|ref|ZP_04797841.1| hypothetical protein HMPREF0791_1922 [Staphylococcus epidermidis W23144] # 1 82 1 82 82 86 100.0 4e-16 TSESNITSNATSNSASNGESTNSSNVAQQSDHKDNSDETKELPETGNRNDTNNTNVLMGA VLSLLAGLDLVKKSRKNKEDKK >gi|224999853|gb|ACJC01000147.1| GENE 2 386 - 1579 822 397 aa, chain + ## HITS:1 COG:SA2446 KEGG:ns NR:ns ## COG: SA2446 COG0201 # Protein_GI_number: 15928239 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Staphylococcus aureus N315 # 1 397 4 402 403 397 54.0 1e-110 MLRNKDFKILHKRIIFTMFVLFIYIFGSNISIIGNESIKTSHDSFFKLAVSNVGGDLSSL NVFSLGLGPWLTAMISIMLFNYRDVDNVIKQTRSEKQIKERLLTLLIATIQAYYVIHTYV QNNIIQNTNILLLVLVLLTGTLLLVWLADQNTTYGIGGPMPIVLMSLIKSLFHQQLSSIN VTATLFIVIGLLVIAVLTLLYIELSEYRLHYKDIMNMSTQTSHSYIAWKLNPAGSISIMI SLSLFLLLNSVINLIGKLLLNKEMNVDIFGFDNPVGITVYIVIQISFGYLLSRFLINTKR KSKEFLKNGNYFVGISPGKETERYLNKKARRICWFGSITVTLILAVPLYCSLLVPELSKE IYFSIQLIMLIYIGISITETLRAYSYFDRYKSILDKY >gi|224999853|gb|ACJC01000147.1| GENE 3 1593 - 3149 1375 518 aa, chain + ## HITS:1 COG:no KEGG:SH0328 NR:ns ## KEGG: SH0328 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 518 1 523 524 446 45.0 1e-123 MRYFIPAWYSGQKLWKDNTLPFYYKPDKTEFDDMISLMSMHKKNGYEYKLLVLNYSPNLR LFLHRHDLFESDYWSVFDVLQSAPNTLPRAIDYLDLNWPKDTEFVYSPFMVETIIGENMY SQITFNQEGYVLHIHEYENGLQQQKMIFDDRGFISSIIKYENDTEVEQIYLNVLGENILT ENLITGEVLVNNPVKDLLDHSKYLNMLEIIEEIVEKFYKDQITQSDDFIAASDERHNQLI TRYFEANQLCFSLFSNRNREITPHLIQSMQPAKSCLVDTKENERECSLIVNNNSIDMKMS RITPFDTEKIPNISSQLYDVHIGFWIDNLSRDVVEPVIDQLYSYIKNKENYRVTILMKDI TSKTPKWLSDIVKEKNELYNEEQRTLSEEMADVLEEEMEFIKIIKIESVLFEEDLIRAMS QLRVVIDLGDEPDLYLQISAISAGVPQINMIETDYVTSNVNGLIIPSSSNMIQALDYFLL SLKNWNYSYASSIKLVDEFSSTKIIREVDRLIKGELYG >gi|224999853|gb|ACJC01000147.1| GENE 4 3142 - 4686 1212 514 aa, chain + ## HITS:1 COG:no KEGG:SH0329 NR:ns ## KEGG: SH0329 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 514 1 514 520 646 58.0 0 MARKFNILQIGGEDLEPIFHDKKNVYNDYLDPILFTFESGYEEAIENLIDDIGSFDLVFI QTTYSQELMKVIEIVGEPYTIYVDENYWDFQFENDSRVKYKFIKPLFYKSTDELHHKLKA GAFTKQYGDKVSPIKGEVNPNFEGEFEYFGNKELVLSGNFGESYTPIVSWNQNLVYDKNM MVQLWPEFFVEGNVDVQYIIRLIPFGSLEHTKDVITLTKDDLKQPLELMPRSYDANISIV VKAKGTGVVHLRAIHKRWSRAEMGQFIMGGQRYNDENGEEYIHYFNPGDLKPPLNVYFSG YRSLEGFEGYFMMNSLDAPFLLIGDPRIEGGSFYLGSETYENSIKKVIKETLEYLNFKED DLILSGLSMGSFGALYYSAQLNPRAVIVGKPLVNIGRIAENMKLKRPNDFGTALDILMSQ EGTFSKENINHLNKRFWEKFKQNEFENTTFAIAYMQNDDYDDIAFDDLMSVLGESKTHIM TRGVPGRHNDDSATITSWFVNFYHIILNNYFGRE >gi|224999853|gb|ACJC01000147.1| GENE 5 4688 - 5194 324 168 aa, chain + ## HITS:1 COG:no KEGG:SH0330 NR:ns ## KEGG: SH0330 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 157 1 159 180 139 42.0 5e-32 MNQNKRFDITWKKVHKSTFMYGSKLKFNNNFVSMDNSLMPSGMVIHEWNMLSSYTTNKQV PSLPLLKKGSNYKIKFDYDVIPEKSVYFKIVLYKKNGEKIKTMIIEDDDSEFEYPKDAYS YKIELMNAGFQHLQFYRIIIEDQHIEKCHSTIPTDISETIDKIRHNIV >gi|224999853|gb|ACJC01000147.1| GENE 6 5216 - 7606 2125 796 aa, chain + ## HITS:1 COG:SA2442 KEGG:ns NR:ns ## COG: SA2442 COG0653 # Protein_GI_number: 15928235 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Staphylococcus aureus N315 # 1 796 1 796 796 1004 64.0 0 MTGKFENTINKMRLKKLKKTLNSINNMSHVFSEYTDEALKAKTQEFKKRIMESKETLDQI LPEAYAVVRESAYRVLGMYPKDVQVLGAIVMHQGNIAEMQTGEGKTLTATMPLYLNALTG KRAFLITTNDYLAKRDCMEMKPLYEWLGLTASLGFIDIPDYEYEAGEKQKLYAHDIIYTT NGRLGFDYLTDNLADHKRTKFLPELQFAILDEVDSIILDAAQTPLVISGAPRLQSNLFDI VKEFIHTLKDGQHFKLNKNKKEIWLKKQGIDKANDYFKVHHLYDESNFDLVRIINLSLRA KYLFDYNLDYFVSNGEIVLIDRITGRMLPGTKLQSGLHQAIEAKEDVELSIDKSVMATIT FQNLFKLFDKFAGMTGTGKQGEKEFFELYSKIVVEIPTDKPIQRQDLEDRVFANMEEKNQ AIIDTVVEKNKKGQPVLLITRTAEAAEYFSTNLFQLDIPNNLLIAQNVSKEAQMIAEAGN RAAVTVATSMAGRGTDIKLAQGVHEIGGLAVIINEHMENSRVDRQLRGRAGRQGDPGVSQ IFVSLDDYIVKKWSQSKLLENDKLNQTSSETLENSKVFQLRVKNIVNKAQTVSEETSIVQ REMANEFEKSISVQRDLIYKERNLILDMVNKNQFDYKQLAKDVFRKDLKIFNINDEKGVI NYVYKNLSFNFETNNEKIDVYNQESIVNFLIQHFMQQFGDNQKKAADPYFILRFIQKSII KAIDIAWIEQVDYLQQLKASVNNRQNGQRNAIYEYHKVALESYEDMTITLKRNIIRNLCL SIITFDKHGDLMIYFP >gi|224999853|gb|ACJC01000147.1| GENE 7 7625 - 9136 1373 503 aa, chain + ## HITS:1 COG:SA2441 KEGG:ns NR:ns ## COG: SA2441 COG0438 # Protein_GI_number: 15928234 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 1 503 1 502 502 655 64.0 0 MTVYNINFGIGWASSGIEYAQAYRAKLLRQLDRNVKFIFLDFISSENIQTLTDNLGFKDD EVIWLYQYFSNIKIAPTTYTLDDLMGEIGNEITQIEDNGKIKRLYFDDDKSSFATCYMKN PDKNYVDRVEFVLEGYLIRKDFFSYTRVFSEYYAPYQNYAKIYMRQFYNEDGTIAYKEYI DDKESVFVFDDAQLYSKAEFVAYFMNKLNLSNRDIVILDRATKIGQAVLQNKGASKLGVV VHAEHFSNNATDGDNILWNNYYEYQFRNAKFVDFFITATDLQNRILSQHFSKYTHDNPLI RTIPVGSLNKLIHPEKKRQPYSMITASRLAKEKHVYWIAKAVVKAKKEIPKLTFDIYGQG GEKDKIEQIVYENNAQDYITLKGHVNLQNVYSKYELFVSASQSEGFGLTLMEAVGSGLGM IGFNVNYGNPTFIRNSENGYLMSENVESADEEEKINELASYIVKYFKNGPKHPESISYEI ASEFLTQKIVEKWDMLIKEVLHD >gi|224999853|gb|ACJC01000147.1| GENE 8 9129 - 10469 855 446 aa, chain + ## HITS:1 COG:no KEGG:SERP2274 NR:ns ## KEGG: SERP2274 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 436 1 436 446 455 50.0 1e-126 MINIFDNYHFNSQLLHRSLKLAGYQHLTICLEDDGFLPDDVTSPYQFFAQNPINPSDKPL FFNEVEVPTYWEITGTNDMGEIKNLGEVRGKIFYQPNFKTRIVSRVEWLDNKQRLRTVDF YNKNGFKFAETIYDLTGKAIMKKYFDRLGKEIIYENYVTGDYVLNWKNETHFFKSHESFI IYYLKQLNVDLSVVIFNSLAMPFIALYRMDTIGKGILVWQENSHGNVPGNMKLMFDEYLK RNYSVMIPDSIEYLTICQRLDDSERDKVYRGGYLYDYRKQNQFSRNILTLTNSDQLSCIE ELVKNNSNYQFHIAAITEMSNKLLELVKFDNIRLYPVADEETIESLYQQCDIYLDNNKGN ELLDAVSRAFENDMVIFATHDEAHNRMFTATENIVMKKDINNLTVILKKMANSSKAYHTR LQLQKDYANEIEHEQFINRINMSLKK Prediction of potential genes in microbial genomes Time: Sun May 29 08:01:40 2011 Seq name: gi|224999852|gb|ACJC01000148.1| Staphylococcus epidermidis W23144 contig00192, whole genome shotgun sequence Length of sequence - 2294 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 21 - 80 9.8 1 1 Op 1 24/0.000 + CDS 213 - 908 191 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 2 1 Op 2 . + CDS 910 - 1680 615 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 1771 - 1810 8.4 Predicted protein(s) >gi|224999852|gb|ACJC01000148.1| GENE 1 213 - 908 191 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 209 5 223 305 78 25 6e-15 MDVLTVEHLTKKIGNKTILEDVSLNLKRGQIIGLVGANGAGKTSLMKVILGYSSYQDGTF RIIENKNKKSNVGALIENPGIYPFMSGYDNLKLLNETKNTHDIDTIVSQLDMDDYIHNKA KTYSLGMKQKLGIAIAFLNQPQLIILDEPMNGLDPKAVRDVRELIVKKAQEGVTFLISSH ILSELVKITNSILIINKGKLVTETTEEELNQYEDNDLENVLLNIIDKEDQS >gi|224999852|gb|ACJC01000148.1| GENE 2 910 - 1680 615 256 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 259 67.0 3e-69 MGTLIKQECFKLCKKKSTFIIPIIIILLMVVQAIISKNYDDVFSPQSSIESAFSGFSWFI FLLIIQASTIISMEFYHGTIKNLLYRKYTRTNIIISKIITLVIFSLLYFIISIVVGFILW AIFFNDINLLESKGDELSLLSKMLLTGLGTYVGTWLVLSVTLLISCAMKSPGVSIAVGIV FYFATSILSGILTIIVDKWEWLKWNPISMMNIMIQIVDKSMKKYTKLELHELFIGNIVYI VIFLILVVFVFKKKNV Prediction of potential genes in microbial genomes Time: Sun May 29 08:02:16 2011 Seq name: gi|224999851|gb|ACJC01000149.1| Staphylococcus epidermidis W23144 contig00193, whole genome shotgun sequence Length of sequence - 123696 bp Number of predicted genes - 106, with homology - 106 Number of transcription units - 51, operones - 23 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 217 - 276 7.2 1 1 Op 1 12/0.000 + CDS 315 - 986 700 ## COG0132 Dethiobiotin synthetase 2 1 Op 2 6/0.000 + CDS 979 - 2334 1007 ## COG0161 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 3 1 Op 3 2/0.071 + CDS 2345 - 3478 845 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes 4 1 Op 4 . + CDS 3471 - 4157 655 ## COG1424 Pimeloyl-CoA synthetase + Term 4173 - 4227 5.6 - Term 4161 - 4215 5.6 5 2 Op 1 . - CDS 4267 - 4644 272 ## SE0183 hypothetical protein 6 2 Op 2 . - CDS 4601 - 5788 1156 ## SERP2390 cysteine protease precursor SspB - Prom 5840 - 5899 5.7 + Prom 6187 - 6246 11.5 7 3 Tu 1 . + CDS 6280 - 8211 2215 ## COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold + Term 8233 - 8281 9.4 + Prom 8289 - 8348 15.8 8 4 Op 1 . + CDS 8428 - 8649 247 ## SE0186 hypothetical protein 9 4 Op 2 . + CDS 8719 - 9213 347 ## SE0142 hypothetical protein + Term 9289 - 9336 12.1 - Term 9272 - 9328 14.5 10 5 Op 1 1/0.214 - CDS 9368 - 10249 809 ## COG0523 Putative GTPases (G3E family) 11 5 Op 2 1/0.214 - CDS 10219 - 11601 526 ## COG0370 Fe2+ transport system protein B 12 5 Op 3 . - CDS 11595 - 12701 757 ## COG0492 Thioredoxin reductase - Prom 12751 - 12810 9.1 + Prom 12872 - 12931 7.9 13 6 Tu 1 . + CDS 12960 - 13955 1163 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 14091 - 14145 8.6 + Prom 14112 - 14171 9.6 14 7 Op 1 . + CDS 14368 - 15273 1029 ## COG1477 Membrane-associated lipoprotein involved in thiamine biosynthesis + Term 15283 - 15315 -0.9 + Prom 15276 - 15335 4.5 15 7 Op 2 . + CDS 15356 - 18373 3607 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family 16 7 Op 3 9/0.000 + CDS 18402 - 19778 1372 ## COG0477 Permeases of the major facilitator superfamily + Prom 19792 - 19851 3.5 17 7 Op 4 . + CDS 19947 - 20720 197 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 20789 - 20820 0.2 - Term 20747 - 20802 2.3 18 8 Op 1 . - CDS 20848 - 21537 212 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 19 8 Op 2 . - CDS 21552 - 22472 672 ## SLGD_00194 hypothetical protein 20 8 Op 3 . - CDS 22469 - 23551 638 ## SLGD_00195 hypothetical protein - Prom 23585 - 23644 7.1 21 9 Op 1 . - CDS 23794 - 25278 1725 ## SLGD_00196 hypothetical protein 22 9 Op 2 . - CDS 25323 - 25895 743 ## SLGD_00197 phage protein - Prom 25930 - 25989 9.4 + Prom 26404 - 26463 10.2 23 10 Op 1 2/0.071 + CDS 26582 - 27310 563 ## COG0253 Diaminopimelate epimerase 24 10 Op 2 4/0.000 + CDS 27307 - 28122 744 ## COG0500 SAM-dependent methyltransferases 25 10 Op 3 2/0.071 + CDS 28115 - 29407 798 ## COG4408 Uncharacterized protein conserved in bacteria 26 10 Op 4 38/0.000 + CDS 29458 - 31056 1880 ## COG0747 ABC-type dipeptide transport system, periplasmic component 27 10 Op 5 49/0.000 + CDS 31069 - 32004 989 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 28 10 Op 6 44/0.000 + CDS 32001 - 32879 718 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 29 10 Op 7 17/0.000 + CDS 32866 - 33681 417 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 30 10 Op 8 2/0.071 + CDS 33674 - 34423 358 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 31 10 Op 9 . + CDS 34435 - 35625 1163 ## COG0477 Permeases of the major facilitator superfamily + Prom 36167 - 36226 5.5 32 11 Op 1 11/0.000 + CDS 36370 - 38616 2894 ## COG1882 Pyruvate-formate lyase 33 11 Op 2 . + CDS 38638 - 39393 775 ## COG1180 Pyruvate-formate lyase-activating enzyme + Term 39417 - 39457 6.1 - Term 39403 - 39444 6.3 34 12 Tu 1 . - CDS 39535 - 40752 1510 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Prom 40850 - 40909 11.6 + Prom 40799 - 40858 9.2 35 13 Tu 1 . + CDS 41100 - 42461 1248 ## COG1114 Branched-chain amino acid permeases + Term 42537 - 42587 0.1 + Prom 42838 - 42897 7.5 36 14 Tu 1 . + CDS 42928 - 43467 554 ## COG1309 Transcriptional regulator + Term 43484 - 43528 5.2 + Prom 43511 - 43570 10.5 37 15 Op 1 3/0.000 + CDS 43605 - 44498 1210 ## COG3246 Uncharacterized conserved protein 38 15 Op 2 1/0.214 + CDS 44498 - 45460 1233 ## COG1250 3-hydroxyacyl-CoA dehydrogenase 39 15 Op 3 . + CDS 45463 - 45948 425 ## COG0824 Predicted thioesterase + Prom 45993 - 46052 4.3 40 16 Op 1 24/0.000 + CDS 46083 - 47270 1482 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 41 16 Op 2 13/0.000 + CDS 47267 - 47902 565 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 42 16 Op 3 13/0.000 + CDS 47921 - 48880 1103 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 43 16 Op 4 . + CDS 48883 - 49530 880 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 44 16 Op 5 . + CDS 49571 - 50338 884 ## COG0627 Predicted esterase + Term 50509 - 50556 11.6 - Term 50500 - 50541 9.1 45 17 Op 1 3/0.000 - CDS 50609 - 52174 1472 ## COG1288 Predicted membrane protein - Prom 52220 - 52279 5.5 46 17 Op 2 8/0.000 - CDS 52339 - 53271 1191 ## COG0549 Carbamate kinase 47 17 Op 3 . - CDS 53294 - 53779 521 ## COG0078 Ornithine carbamoyltransferase 48 17 Op 4 . - CDS 53832 - 54293 546 ## COG0078 Ornithine carbamoyltransferase - Prom 54321 - 54380 8.0 + Prom 54662 - 54721 4.3 49 18 Tu 1 . + CDS 54777 - 55001 315 ## SERP2350 hypothetical protein + Term 55027 - 55062 2.0 + Prom 55025 - 55084 6.3 50 19 Op 1 3/0.000 + CDS 55106 - 55288 176 ## COG0346 Lactoylglutathione lyase and related lyases 51 19 Op 2 . + CDS 55243 - 55533 71 ## COG0346 Lactoylglutathione lyase and related lyases + Term 55549 - 55607 5.1 + Prom 55556 - 55615 12.4 52 20 Tu 1 . + CDS 55643 - 56518 921 ## COG2503 Predicted secreted acid phosphatase + Term 56561 - 56604 6.2 + Prom 56687 - 56746 10.6 53 21 Tu 1 . + CDS 56820 - 57785 1103 ## COG0502 Biotin synthase and related enzymes + Term 58005 - 58060 0.2 + Prom 58007 - 58066 8.1 54 22 Op 1 . + CDS 58090 - 59193 1403 ## COG0371 Glycerol dehydrogenase and related enzymes 55 22 Op 2 10/0.000 + CDS 59209 - 60171 1405 ## COG2376 Dihydroxyacetone kinase 56 22 Op 3 9/0.000 + CDS 60226 - 60801 920 ## COG2376 Dihydroxyacetone kinase 57 22 Op 4 . + CDS 60805 - 61179 551 ## COG3412 Uncharacterized protein conserved in bacteria + Term 61214 - 61265 15.1 58 23 Tu 1 . - CDS 61481 - 62110 488 ## SLGD_00160 hypothetical protein - Prom 62179 - 62238 7.8 - Term 62241 - 62286 4.8 59 24 Tu 1 . - CDS 62350 - 62703 455 ## COG0477 Permeases of the major facilitator superfamily - Prom 62806 - 62865 8.4 + Prom 62810 - 62869 5.1 60 25 Tu 1 . + CDS 62968 - 63213 311 ## SERP2341 hypothetical protein + Term 63434 - 63475 7.3 + Prom 63706 - 63765 5.1 61 26 Tu 1 . + CDS 63785 - 65203 1645 ## COG0477 Permeases of the major facilitator superfamily + Term 65244 - 65287 7.2 + Prom 65568 - 65627 5.9 62 27 Tu 1 . + CDS 65654 - 66964 830 ## COG0477 Permeases of the major facilitator superfamily + Prom 67020 - 67079 9.0 63 28 Op 1 . + CDS 67123 - 74325 6854 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins + Prom 74331 - 74390 4.1 64 28 Op 2 . + CDS 74458 - 74958 345 ## COG2091 Phosphopantetheinyl transferase + Term 74968 - 75031 15.0 + Prom 75112 - 75171 8.8 65 29 Op 1 . + CDS 75329 - 77512 2369 ## COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold + Term 77537 - 77586 4.2 + Prom 77616 - 77675 6.9 66 29 Op 2 . + CDS 77735 - 79138 1853 ## COG0477 Permeases of the major facilitator superfamily + Term 79148 - 79206 15.3 + Prom 79185 - 79244 5.0 67 30 Op 1 . + CDS 79293 - 80996 1929 ## COG3044 Predicted ATPase of the ABC class + Prom 81008 - 81067 2.1 68 30 Op 2 . + CDS 81091 - 81588 418 ## COG4815 Uncharacterized protein conserved in bacteria 69 30 Op 3 . + CDS 81669 - 82625 754 ## COG2962 Predicted permeases 70 31 Tu 1 . - CDS 82733 - 83644 1073 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components - Prom 83855 - 83914 7.6 - Term 83881 - 83919 8.1 71 32 Tu 1 . - CDS 83961 - 85379 1448 ## COG0471 Di- and tricarboxylate transporters - Prom 85454 - 85513 9.1 + Prom 85410 - 85469 11.3 72 33 Op 1 5/0.000 + CDS 85705 - 87057 803 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 73 33 Op 2 28/0.000 + CDS 87099 - 88052 1310 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 74 33 Op 3 24/0.000 + CDS 88123 - 89163 1299 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 75 33 Op 4 . + CDS 89177 - 90454 1716 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 90469 - 90515 7.1 + Prom 90496 - 90555 4.5 76 34 Tu 1 . + CDS 90657 - 91169 654 ## SE0258 immunodominant antigen B 77 35 Tu 1 . - CDS 91333 - 92943 1291 ## COG1292 Choline-glycine betaine transporter - Prom 93138 - 93197 8.0 + Prom 92972 - 93031 8.9 78 36 Tu 1 . + CDS 93106 - 93666 569 ## SE0260 hypothetical protein 79 37 Tu 1 . - CDS 93699 - 94337 605 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 94366 - 94425 8.5 - Term 94470 - 94522 9.1 80 38 Tu 1 . - CDS 94531 - 95493 1017 ## COG1054 Predicted sulfurtransferase - Prom 95565 - 95624 8.9 + Prom 95659 - 95718 9.9 81 39 Tu 1 . + CDS 95776 - 96753 1125 ## COG3386 Gluconolactonase + Term 96916 - 96956 3.5 - Term 96904 - 96944 6.5 82 40 Tu 1 . - CDS 97016 - 97531 698 ## COG2353 Uncharacterized conserved protein - Prom 97762 - 97821 10.7 - Term 98567 - 98613 11.1 83 41 Tu 1 . - CDS 98754 - 100250 1646 ## COG0579 Predicted dehydrogenase - Prom 100310 - 100369 7.0 84 42 Tu 1 . + CDS 100601 - 101119 338 ## COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins - Term 101213 - 101264 3.3 85 43 Op 1 . - CDS 101270 - 101677 505 ## SE0268 hypothetical protein - Prom 101735 - 101794 4.8 86 43 Op 2 . - CDS 101840 - 102250 219 ## COG1522 Transcriptional regulators - Prom 102291 - 102350 9.5 + Prom 102273 - 102332 9.3 87 44 Tu 1 . + CDS 102353 - 102769 412 ## COG2128 Uncharacterized conserved protein + Term 102797 - 102841 6.3 88 45 Op 1 . + CDS 103147 - 103818 650 ## SE0270 ATP phosphoribosyltransferase regulatory subunit 89 45 Op 2 18/0.000 + CDS 103843 - 104457 666 ## COG0040 ATP phosphoribosyltransferase 90 45 Op 3 6/0.000 + CDS 104450 - 105700 1302 ## COG0141 Histidinol dehydrogenase + Prom 105725 - 105784 2.3 91 45 Op 4 18/0.000 + CDS 105810 - 106388 506 ## COG0131 Imidazoleglycerol-phosphate dehydratase 92 45 Op 5 25/0.000 + CDS 106385 - 106963 587 ## COG0118 Glutamine amidotransferase 93 45 Op 6 23/0.000 + CDS 106956 - 107660 659 ## COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase 94 45 Op 7 24/0.000 + CDS 107657 - 108415 711 ## COG0107 Imidazoleglycerol-phosphate synthase 95 45 Op 8 . + CDS 108412 - 109047 622 ## COG0139 Phosphoribosyl-AMP cyclohydrolase + Term 109140 - 109193 0.7 96 46 Tu 1 . - CDS 109156 - 109941 637 ## COG2162 Arylamine N-acetyltransferase - Prom 109975 - 110034 11.8 97 47 Tu 1 . + CDS 110347 - 112413 2457 ## COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold + Term 112557 - 112613 6.1 - TRNA 112683 - 112775 32.8 # Thr CGT 0 0 + Prom 112839 - 112898 8.9 98 48 Op 1 . + CDS 113011 - 113205 69 ## gi|242243511|ref|ZP_04797956.1| hypothetical protein HMPREF0791_2037 + Prom 113264 - 113323 8.3 99 48 Op 2 . + CDS 113366 - 114541 1282 ## COG2814 Arabinose efflux permease + Term 114553 - 114598 3.1 - Term 114539 - 114586 11.1 100 49 Op 1 . - CDS 114641 - 116176 1631 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 101 49 Op 2 . - CDS 116273 - 117823 1676 ## SERP2287 hypothetical protein - Prom 117923 - 117982 14.2 + Prom 117931 - 117990 10.7 102 50 Op 1 15/0.000 + CDS 118058 - 119014 1206 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Term 119058 - 119095 1.5 + Prom 119043 - 119102 2.1 103 50 Op 2 9/0.000 + CDS 119125 - 119901 271 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 104 50 Op 3 8/0.000 + CDS 119951 - 120703 830 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 105 50 Op 4 . + CDS 120700 - 121515 730 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component + Prom 121599 - 121658 11.8 106 51 Tu 1 . + CDS 121791 - 123092 604 ## SE2252 hypothetical protein Predicted protein(s) >gi|224999851|gb|ACJC01000149.1| GENE 1 315 - 986 700 223 aa, chain + ## HITS:1 COG:SA2215 KEGG:ns NR:ns ## COG: SA2215 COG0132 # Protein_GI_number: 15928005 # Func_class: H Coenzyme transport and metabolism # Function: Dethiobiotin synthetase # Organism: Staphylococcus aureus N315 # 1 222 1 222 228 291 65.0 9e-79 MNIFITGTNTDIGKTYVTKYLYKALKTRGYRVCIFKPFQTEEIGGGRYPDLEIYKNECDL DYDVTSLYTFKDPVSPHLAFKIERHQQLNHQTMIDKLESLEAQFDMILIEGAGGIAVPIY EYSDHFYMTTDLIKDTSDFIVSVLPSKLGAINDAIVHQKYIDHHELPPNVLIMNNYTDSA IEQDNLHTIEKLTHKPVYTLGHQATQESFSEAFIQRMIGGSNG >gi|224999851|gb|ACJC01000149.1| GENE 2 979 - 2334 1007 451 aa, chain + ## HITS:1 COG:SA2214 KEGG:ns NR:ns ## COG: SA2214 COG0161 # Protein_GI_number: 15928004 # Func_class: H Coenzyme transport and metabolism # Function: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase # Organism: Staphylococcus aureus N315 # 1 451 1 451 452 725 75.0 0 MANTRELNHKDAQYVWHPFTQMGVYAKNDNIIIEKGRGSYLYDTEGNKYLDGYASLWVNV HGHQHKKLNQAIHKQLDKIAHSTLLGSSNIPSIELAEQLVKLTPDRLQKVFYSDTGSASI EIAIKMAYQYWKNIDAKRYAKKNKFLTLHHGYHGDTIGSVSVGGIDSFHNIFKDLIFENI QIETPCLYKSKYRNEAEMLNSILNQIEDILSEKNDEIVGFILEPLIQGATGLFVHPHGFL KAVEQLCRKYDVLLICDEVAVGFGRTGEMFACNHEDVQPDIMCLGKAITGGYLPLAATLT SQKIYDAFLSQSHGKNTFFHGHTYTGNQLVCSVALENINLFKKKHLIGHIQKTSQTLKRR LEALQPHKNIGNIRGRGLMYGVELVENKSTQTPLDIPTVELIIRRCKENGLMIRNLENVI TFVPILSMSNKEIKKMVKIFDKALHQTLSKK >gi|224999851|gb|ACJC01000149.1| GENE 3 2345 - 3478 845 377 aa, chain + ## HITS:1 COG:SA2212 KEGG:ns NR:ns ## COG: SA2212 COG0156 # Protein_GI_number: 15928002 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Staphylococcus aureus N315 # 1 371 1 371 371 360 53.0 3e-99 MDIKAQLKQIQDKGLYRALQPIKSVEKQYIYINDQSYINFTSNDYLGIGQLEYQPQNFLD FIKTYSIHLSSSRLVSGNSVVYQQLEQAISEHFNFEDALIFNSGYDANLAVFNIFKNNNV VIFSDQQNHASIIDGIKLSGLSKVIYQHLNYDDLESHLARDSHPDVQKVIVSDSVFSTNG AKADINRLVNLKQRYNAILIIDASHSLGLNLFECHADIDIVTSSLSKAWGAHGGLILSSK DVKDLIINKGRSLIYSSSLPSYHLYFIQVSLQHVIEDTYRREKLNALSEYFNHQFMELFP NQPLSNTPIKNIVCDSLVSAQAQYDMLFEHGIFVSYLRYPTVSQPTLRISLSYFHDTDDI DRLFNVMKQYDEGDSYV >gi|224999851|gb|ACJC01000149.1| GENE 4 3471 - 4157 655 228 aa, chain + ## HITS:1 COG:SA2211 KEGG:ns NR:ns ## COG: SA2211 COG1424 # Protein_GI_number: 15928001 # Func_class: H Coenzyme transport and metabolism # Function: Pimeloyl-CoA synthetase # Organism: Staphylococcus aureus N315 # 1 226 1 226 230 275 57.0 7e-74 MYSIKMRASHEDIHISGAETMCEFKDLENYLKKYFNKAFNHENGNIDFLNLKIEKVKAPI QTIPALPVVENLNDTLTQLAKQTDVSEYALNKGLEYIKNDITYTGAIILSAQTGQRLDST EQRGIRVTHLAFKTCKRNGEISERVKDARALATCINAFEGVKAELCVSDDLHYTTGYYAS PKLGYRRIFNIKEKGTRHGGRIIFVDEGINLNAYVSFLETVPKEIIEK >gi|224999851|gb|ACJC01000149.1| GENE 5 4267 - 4644 272 125 aa, chain - ## HITS:1 COG:no KEGG:SE0183 NR:ns ## KEGG: SE0183 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 19 125 1 107 107 189 98.0 3e-47 MAITMNGMHQFMVINIEGVLMHNYNNINIVSDDSKYQEICWFHTLEGIWHPVEVETSPLN ITFNKEITPNYVCTLINEDSRKIILSNVDNPNIIIEMILINSKKLVFNAISKEGLGTSPK ITFTK >gi|224999851|gb|ACJC01000149.1| GENE 6 4601 - 5788 1156 395 aa, chain - ## HITS:1 COG:no KEGG:SERP2390 NR:ns ## KEGG: SERP2390 # Name: sspB # Def: cysteine protease precursor SspB # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 395 1 395 395 712 97.0 0 MKKKLSYMITIMLAFTLSLALGLFFNSAHADSLPQKDGANQKTTKVTVSNKDVPDAVRKL AEEQYLSRVALLDKASNHKATSYTLGEPFKIYKFNKESDGNYYYPVLNKKGDVVYVVTIS PNPSNSKASKQQNNYSINVSPFLSKILNQYKNQKITILTNTKGYFALTEDGEVTLVLKTP RNNEKTYENSTESTKSKDLNDFKQTASVTKPTLEYQSTRNEIHAEYVNQLKNFRIRETQG YNSWCAGYTMSALLNATYSTNRYNAESVMRYLHPNLRGHDFQFTGLTSNEMLRFGRSQGR NTQYLNRMTSYNEVDQLTTNNQGIAVLGKRVESSDGIHAGHAMAVAGNAKVNNGQEVILI WNPWDNGFMTQDAHSNIIPVSNGDHYEWYASIYGY >gi|224999851|gb|ACJC01000149.1| GENE 7 6280 - 8211 2215 643 aa, chain + ## HITS:1 COG:SA0309_2 KEGG:ns NR:ns ## COG: SA0309_2 COG1075 # Protein_GI_number: 15926022 # Func_class: R General function prediction only # Function: Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 285 635 1 351 363 447 60.0 1e-125 MKNNNETRRFSIRKYTVGVVSIITGITIFVSGQHAQAAEMTQSSSDSNEQSQQTEQVEQK EDTTHLSYELNQEGETASQSKTNQENQSDGNVQKKDNQIQQGSTQTSPLNDQKQTSMEQQ SKDNHVSPNSRQDTYPKGQNQDDKGKQQFKDNQHSQTEHQPNTQNQNNDQDSSDKKQHPS DQTQASSSKGTQPKQSQSIEDRDKTVKQPSSKVHKIGNTKTDKTVKTNQNKQTSLTSPRV VKSKQTKHINQLTAQAQYKNQYPVVFVHGFVGLVGEDAFSMYPNYWGGTKYNVKQELTKL GYRVHEANVGAFSSNYDRAVELYYYIKGGRVDYGAAHAAKYGHKRYGRTYEGIMPDWEPG KKIHLVGHSMGGQTIRLMEHFLRNGNQEEIDYQRQYGGTVSDLFKGGQDNMVSTITTLGT PHNGTPAADKLGSTKFIKDTINRIGKIGGTKALDLELGFSQWGFKQQPNESYAEYAKRIA NSKVWETEDQAVNDLTTAGAEKLNQMTTLNPNIVYTSYTGAATHTGPLGNEVPNIRQFPL FDLTSRVIGGDDNKNVRVNDGIVPVSSSLHPSDEAFKKVGMMNLATDKGIWQVRPVQYDW DHLDLVGLDTTDYKRTGEELGQFYMSMINNMLKVEELDGITRK >gi|224999851|gb|ACJC01000149.1| GENE 8 8428 - 8649 247 73 aa, chain + ## HITS:1 COG:no KEGG:SE0186 NR:ns ## KEGG: SE0186 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 73 1 73 132 123 91.0 2e-27 MKYYGKFLCGISFLILTCFIGGCGFMNKENNKEAEIKESFHKTLSMYPIKNLEDLYDKEG YRDEEFEKRDKGT >gi|224999851|gb|ACJC01000149.1| GENE 9 8719 - 9213 347 164 aa, chain + ## HITS:1 COG:no KEGG:SE0142 NR:ns ## KEGG: SE0142 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 160 98 257 261 205 70.0 4e-52 MNRNTRKTTGHFYTSITTEDKKRRVHSKDKEYPVRLKNNKIEPTKPIADETLKKEIKNFQ FFSQYGNFKNLKDYKNGNVSYNPNVPSYSAEYQLSNEDDNVKQLRKRYDIPIKRAPKLIL KGDGDLKGSSIGYKDIEFSFVDNKEESVYFADSLEFNPSEVNNE >gi|224999851|gb|ACJC01000149.1| GENE 10 9368 - 10249 809 293 aa, chain - ## HITS:1 COG:SA2368 KEGG:ns NR:ns ## COG: SA2368 COG0523 # Protein_GI_number: 15928161 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Staphylococcus aureus N315 # 1 288 1 288 296 346 56.0 2e-95 MEIIIVSGFLGSGKTSTLNHLIADALENNLNTAVIMNEFGKLSVDGQLINHPKVPMSEIT EGCICCAMKSDVSQQLHELYLKYQPDIIFIECSGVAEPLAVVDACFTPVLAPFITIRSMV GMIDASMYAQIKSYPRDIVALFYEQLRHCSTLFINKIDKVEVEETARLLRHLERINSDAN IQVGQFGELNLKSLLEPTHINSNACGTLHSNINHQFIENPRLQTKEEMISALDNLPQDVY RVKGFVRFSDQQHVYLVQYAQGNIELSPIQLKTDVPLYLIVIGKHLKQIQFDL >gi|224999851|gb|ACJC01000149.1| GENE 11 10219 - 11601 526 460 aa, chain - ## HITS:1 COG:SA2369 KEGG:ns NR:ns ## COG: SA2369 COG0370 # Protein_GI_number: 15928162 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Staphylococcus aureus N315 # 1 441 1 446 446 434 55.0 1e-121 MLTVTFNLRDGTFTDIPDDAHELIIEGYDKLTSSQQVLLKRYIIKHQLDISLQHGVPSSP LHSLNIIKTLRTFVKESKVYHPRFHNIIYGWCFIILMFALPIYLSYHISDGLQQYVAPWL SKLSQISLFQEDKLQHILFGHYGVISLGTYSFIWALPVVFMISLSTALVDISHLKHHLVW SIEPTMLRLGLHGADIIPLLEGFGCNAAAITQATHQCHQCTKLQCMSLVSFGTACSYQIG ATLSIFNASQKSWLFLPYLCMIFIGGIIHNKLWYSHQTHMTTQSVFQRQPVRWPKPKLLL KAAWKSIQMFIVQALPIFIVICLIVSLLSLTPILTFISKAFIPLLWLLDVPTQLAPGILF SMIRKDGMLLFNTNGGTLIQRLSAFQLLLLVFFSSTFTACSVTMTMLIRRLGSILGIKMI MKQMVSSTLCVIVLVITMLSIAKISDLGVMLWKSLLSVAF >gi|224999851|gb|ACJC01000149.1| GENE 12 11595 - 12701 757 368 aa, chain - ## HITS:1 COG:SA2370 KEGG:ns NR:ns ## COG: SA2370 COG0492 # Protein_GI_number: 15928163 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 1 368 1 368 368 439 60.0 1e-123 MSHHRIIIIGAGAAGLGMAITLQEFNIKDVLIIEKGTIGHSFKHWPLSTKTITPSFTTNG FGMPDMNAIAKDTSPAFTFNEEHLSGKRYAEYLSLVATHYNLNVKTNTNVSRVTYIDGVY HVSTDYGVYTADYIFIATGDYSFPYHPFSYGRHYSEIQTFTQLKGDAFTIIGGNESAFDA AINLSQTGARISIYTSKTGLKKEDADPSIRLSPYTQQRLQNAIQEGALIEMHVGYRAHKV TYQDHSYKIHFDNGHIVHSHTEPIIATGFDVTQNPLIEQLFQIRQSEIQLTELDESTKFP NVFLIGATVRHQNAILCYIYKFRARFAVLARIVSLREGLPEDTSLIQSYRQKNMFLDDYH CCDVNCTC >gi|224999851|gb|ACJC01000149.1| GENE 13 12960 - 13955 1163 331 aa, chain + ## HITS:1 COG:SA2194_1 KEGG:ns NR:ns ## COG: SA2194_1 COG0803 # Protein_GI_number: 15927984 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Staphylococcus aureus N315 # 1 328 1 320 330 283 57.0 4e-76 MYKKGLIIFFVAVLALSLAACGKDGHQQSSDHKGKLDVKTTVYPLKSFAQQIGGKYVNVE SVYPKGVDPHTYDPSQKQMVDIGKSDLFLYTGDNLDPVAKKIAKAINDKDKTLSLESALD KNKDLLKGEEHEHEHGEGHEHGEAHEDEHEHEHHHHGKYDPHIWLDPVVSQKFAKAIKDE LVEKDSKHKSYYEKNYNQLVKELKDLDKDMKHAVKGNEDKTVYISHDSIGYLAERYHFEQ EGIENMNAEEPSQKDLTNIVKQIKEDKVKNILIEENVSHKVADTVRKETNAKTIKFYNMG SHTKQQDDDNNTYQSFMKKNIKAIEKALKNE >gi|224999851|gb|ACJC01000149.1| GENE 14 14368 - 15273 1029 301 aa, chain + ## HITS:1 COG:SP1470 KEGG:ns NR:ns ## COG: SP1470 COG1477 # Protein_GI_number: 15901320 # Func_class: H Coenzyme transport and metabolism # Function: Membrane-associated lipoprotein involved in thiamine biosynthesis # Organism: Streptococcus pneumoniae TIGR4 # 3 295 9 302 307 240 42.0 2e-63 MIKAMGTVIRLSIEHQHPDTLLQEAEIKIRAWESQFSANDPKSDLMNVNQHAGIAPVKVS SEMFNMIRYGYETTLSSNFKMNILIGPLVKLWKIGFKDALKPKEEDIQRALLCMNPENLV LNSKTHEVFLTQSGMEIDLGAIVKGYFADQLQQYFLSHGVSSAIIDLGGNVLTIGRQPET LEKWHVGVRNPFHKDALPLVTLNVEHQSVVTSGIYERYFIQENQLFHHILDSTTGYPVDN DIASVTIISDHGIDGEVWSTICSFGQSQKNIELLNIIDGIEGIIVTRDGSVLMTSKMQKY L >gi|224999851|gb|ACJC01000149.1| GENE 15 15356 - 18373 3607 1005 aa, chain + ## HITS:1 COG:BS_yqiG KEGG:ns NR:ns ## COG: BS_yqiG COG1902 # Protein_GI_number: 16079477 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Bacillus subtilis # 3 361 6 361 372 260 39.0 1e-68 MSKEIFDTFKFKSGAELKNRVLMAPMTIQSGYFDGSVTSEMIDYYQFRAGDASAIIVESC FVENHGRGFPGAIGIDNDDKIPGLKRLAEAIQAKRSKAILQLYHAGRMANPKFNEGEQPI SASPIAALRPDAVPPREMTHAQINQMIDDFGEATRRAIEAGFDGVEIHGANTYLLQQFFS PHSNRRQDSWGGSREKRTRFPIEVLTKVQHVVAEKEASHFIIGYRFSPEEIEEPGIRFED TMFLLNTLAEYEPDYFHISANSYQRTSIVNQEDTEPLINKYLKMQSAQLAKIPLIGVGSI AQRQDAEHALELGYDLLSVGKAYLVEPQWTDKISQNEEVEQFVDIHDQKVLHIPSPLWKV MDFMILDKEEEHRKYERLKALQNKKVKFNKGTYHVYAKGHNGNLPMKVQLSEDKIVSIEV DDSGESEGIANPVFERLPQDIINGQTLNVDVISGATVTSEGIVQGIADAIEQAGEDPDIL RARPKPVVQWSDEVVEETTDVVVIGTGGAGLSAAATVLDEGKEVIMLEKFAAIGGNTIRT GGQVNAAEPKWQNAFPALAGEKETLLQLLNHDENDIDEAYIEDFNTLKRQIKDYLENSSN ENEYLFDSVELHRIQTYLGGKRKDRNNVEISGDYDLVKTLTDNVLESVYWLKDKGVHFDR SFVDMPVGALWRRGHKPMKAQGLEYIENLGDYVKRNHGRIFTETTAEKLIKEGNQVVGIE ARKANGAKVKIHTRHGVVLATGGFGANTKMLQQYNTYWDNIPDDIKTTNSPAITGDGIRL GVQAGADIVGMGFSQMMPISDPKTGALFTGLIVTPSNFVFVNKEGQRFVNEFESRDVLSK AALEQKDGIFYIIADANIKALAMNTTEDKINQELEDGTLVKADTLEALAQKLNIDTTTFV NTIERYNTFVEQGQDEDFNKNAFDLKIEKAPFYATPRKPAIHHTMGGLKINTQAQVIDVE GHIIEGLYAAGEVAGGIHAGNRLGGNALADIFTFGRIAGQSAVTK >gi|224999851|gb|ACJC01000149.1| GENE 16 18402 - 19778 1372 458 aa, chain + ## HITS:1 COG:SA0099 KEGG:ns NR:ns ## COG: SA0099 COG0477 # Protein_GI_number: 15925807 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 455 1 455 462 389 47.0 1e-107 MSEQFNKGKQLIVAIILGILTYWLFAQSFLNIAPHVQRFYHVDMSIVNIAVSLTSLLTGV FIVVAGGLSDKIGRVKITNAGLILSILGSIALIISHAPILLLLGRVLQGLSAACLLPATI ALINSFFQGEERQKVLSYWSFGSYGGTGLASLFAGIIATFIGWRWIFVLSIIFSIIALIL LRGIPESKDESAYNKKFDIVGIIIFVVMMLSINVVITQGDRIGWLNPLILILIAIFIVTL IAFYIFEKRQDEPFIDLSLFSNNVYIGTTLANLMVNMDIGSLALFNIYVQDDKHLTAAQA GLITIPYMLCSLLMIRVGERFMQKRGPQLPLMLGPISITAGIILLAFTSLPNMIYYIVAC IGFIFIGLGLGFFATPALSTAVSNVPAEKAGTASGIIKMTSTLGAAFGIAVVTTIYTALS VNHPAYLAATIAFIVGAGLVFIAFIAAYCLIPKKNVDI >gi|224999851|gb|ACJC01000149.1| GENE 17 19947 - 20720 197 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 252 4 238 242 80 25 4e-14 MSKTAIITGSAGGLGKGIAERLANDGFNVVLQDINEALLLETEKEFKEKGYQAVAFKSDV SKKKEQEELVQFAVTEFGQLDVMVNNAGVDAVTPILEIDEDELSKLFNINVFGTLFGIQA AANQFIKQKSKGKIINACSIAGHESYEVLGTYSATKHSVRSFTQTAAKELADKGITVNAY CPGVAKTEMWDRIDEEMVKLDDSLEIGDAFEAFSSEIKLGRYQEPSDVANLVSFLASNDS DYITGQSILTDGGLVYR >gi|224999851|gb|ACJC01000149.1| GENE 18 20848 - 21537 212 229 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 196 1 209 245 86 26 7e-16 MIDIQNVSKSYKKKHIFDSLDMQFQPHKITILLGENGAGKSTLLRLIAGIENADEGRIQY FNQYISRRRIRHIVGYVPQDIALFEHMTVMENIEFFKSLCENPISDETLHSYLSQLNFTD TKVKVSNLSGGNKRKVNIMIGLLSRPKILILDEPTEGIDLESRYDIHNLLQQMTDQCLII MTTHHLDEVEALADDIKVIGQNPFYPDILENKGWSFKKYANALADNTKS >gi|224999851|gb|ACJC01000149.1| GENE 19 21552 - 22472 672 306 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00194 NR:ns ## KEGG: SLGD_00194 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 306 1 306 306 325 58.0 9e-88 MKPYIQLVIKKQWLQYVFLISTILIALGTLWLGQKLAQQNFKIPIAIQDMDHSSASKKLI KDIEQNQYVTVKHLSHDDFYIDDLVKKKEVIASLEIPKDFSKHLKANDLNKTLPLYSRDD FIGHIAMEIISRSLYEQQIPNIIHEHLDDMKQPQSLDKVKQSYYSHTPQSKIKSVAINKH AHQSISIGIVFVVVIFVSVIQILLHQRLKQNAPLGRLYLVPYSQLKLYLTYISVHVVILM LMLLMISLFMHQPLSILFYLKTLIIVLFYEAGIALLLFKINVLSHRIFMAIIYTVAIGII YLWIQL >gi|224999851|gb|ACJC01000149.1| GENE 20 22469 - 23551 638 360 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00195 NR:ns ## KEGG: SLGD_00195 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 7 360 35 388 388 471 66.0 1e-131 MTLIVTLTTIQHINQNDSKFNIGIVDKDHSKETKLILNTVGKGNNLGKNAALKTYNENQA QHLLKQNQLQGYFVFDRGMTDTFYKDGSLPITVYTYDEQSSNSVVVNQLTRSVYDRLMLS MGGVLSFNQLAKDPSNEDVAMTLIDMLFTGLNRSGSFNFEPIHIYDTSSYYVVTGFLLSI FILCLSLYTVLKMNQETALKERLQMFHFSFEKLTIVRGIIAWFYSLIWAFIGFIWITHAL NAPFEKYNWPTVALQLTYYVTLLVLCLLLIDLITRSWVNFLLKLLLSFVIVIFSGIIIPT IFFKHMLNDVIITQPFSLVTNQMLEITLNNYILDTHPAFYLSFITLLILFIIVLVWRYRR >gi|224999851|gb|ACJC01000149.1| GENE 21 23794 - 25278 1725 494 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00196 NR:ns ## KEGG: SLGD_00196 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 494 1 497 498 359 47.0 1e-97 MSKKIKIIVPIVLGLIILLGIAWGVYAFVTNTPKNAYLLSEKKTAKNVKSYVDHRFSNEK KFQKKLKDNSYVNTYDLHANASKEYLKDLGLPKTILDSSKITGTIGHDPKSNKGIMSVSP KILDKDIGKFQWTANDSTQFFESPLFKKKYSVKNSELLETAAQIFDEDPSDYKDEGLSNA NFDLNNKLGIVHSQQEDVEKLFKRYTDLVIDQLEDDDFEKGKKEKVKIDGETKNLKPITL NISRDKAKKITVAALKKAKNDKELQRLSSINEKEYKKEIEEQLEDAQDKQTKEFPKIKST IYQQKHQILKRNITVTDSDGEKTTIKGTNVIDDNIEVDYKVTSDGNTHNIKGSSKKDGKH YKDDYKYSGDVDYERLNVHLNNKESVKDSKRKDTGTITIDNAIDHYKVNYEDNLETDAKN NLQKQTLNIGFKLDEEPINIVINANSKLKERIDFNTDNATDFNSLSKKDKDKLSDEIKDK QKDIVKSVFKKLDD >gi|224999851|gb|ACJC01000149.1| GENE 22 25323 - 25895 743 190 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00197 NR:ns ## KEGG: SLGD_00197 # Name: not_defined # Def: phage protein # Organism: S.lugdunensis # Pathway: not_defined # 30 188 39 197 198 119 47.0 6e-26 MKKVLALLFASTLVLGACGDKNDESKNDSSSNSTDSVSVDKNDNEDKTTAKFKNDKLTTD NFDIEILEAKTVKASKYDDDKKPSIAIIYGVKNKKDKDLTASSAFIESFDIYQNSKDVKR SLEIGGGHDTDLKEKYEENMGNKINKDGKVKGVMFFKLKDTKTPVTLEAKDPNHSYNGKV GTKEFKIKEN >gi|224999851|gb|ACJC01000149.1| GENE 23 26582 - 27310 563 242 aa, chain + ## HITS:1 COG:SA2258 KEGG:ns NR:ns ## COG: SA2258 COG0253 # Protein_GI_number: 15928049 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate epimerase # Organism: Staphylococcus aureus N315 # 1 235 38 273 273 272 57.0 5e-73 MATTHVCCEQVGFIESVNYENGDNYHLVMSGNEFCGNATMSYIHYLKERLLIQHQQFQLR VSGCSHPVECKVHSQHYEVTMPKVHQVKERFVKLGDQQFKAFEISYDTYIHYVLMCDGVD LAMKQRVEDFVSAQTWHQQFKTIGVMLFQQDKQFIYPLIHIPKIGSLIWENSCGSGAASI GVLVNYLTDHDIQDYLVNQPGGSIIVSSRKSEQNEYQTTIKGQVSTVATGQAYIEQETMT QI >gi|224999851|gb|ACJC01000149.1| GENE 24 27307 - 28122 744 271 aa, chain + ## HITS:1 COG:SA2257 KEGG:ns NR:ns ## COG: SA2257 COG0500 # Protein_GI_number: 15928048 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Staphylococcus aureus N315 # 2 271 3 272 272 336 63.0 3e-92 MNDHTKIENQLQYYLEQFTYLHQLVLEDSQHIVDLENLIDEYSQWILQPLAEHHYLTWND LETKMSLTKKLQEVSAKCVKQVEVIRAQRLLNGRATTSGYFENIEHCINAEFGRWQIGKN DKLLLIGSGAYPMTLIQVAKETGAAVIGIDIDSEAVDLGQRVVNVLAPNEDIIISNQTVD QLEDIQSVTHIIFSSTIPIKYDILNELYTLTNDEVVVVMRYGDDIKALFNYPSQATDETQ WRCEELQTRPKQIFDIALYRKVASKVGVEHV >gi|224999851|gb|ACJC01000149.1| GENE 25 28115 - 29407 798 430 aa, chain + ## HITS:1 COG:SA2256 KEGG:ns NR:ns ## COG: SA2256 COG4408 # Protein_GI_number: 15928047 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 426 1 426 433 521 61.0 1e-147 MSKILMVGSGPVAIQLARLCYLHGEHIVDMVSRVHASTKSKRVFDAYQRDGFFSVMTQND AHQCFSGKFTVRHFFKDVKDITEYYDVVILACTADAYRPILQQLSKSTLKRIKQIILVSP TLGSHMLVKQLLSDVHCEGEVISFSTYLGDTRVFDKAQPHCVLTTRVKSKLFVGSTQSQS MTLCKLKSLFDYLNIELTTMDTPLHAEIHNSSLYVHPPLFMNQFSLKAVFEGTKLPVYVY KLFPEGPITMTLIHEMRLMWQEMMMILKQLKVPSVNLLKFMVKENYPIRYETMREVDIEN FENLPAIHQEYLLYVRYTAILIDPFSNPDDQGAYFDFSAVPYKHVDTDEQGVIHIPRMPS EDYYRTLIIQAIGRALNVATPMIDTLLLRYENTVKQYCDTHLHQQLSRQFELHHFKQDLA LVTNYLTFYK >gi|224999851|gb|ACJC01000149.1| GENE 26 29458 - 31056 1880 532 aa, chain + ## HITS:1 COG:SA2255 KEGG:ns NR:ns ## COG: SA2255 COG0747 # Protein_GI_number: 15928046 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 532 1 532 532 830 82.0 0 MNKLTKLSTVIFVSGIILAGCGSNKELTEKKENKVLSYTTVKDIGDMNPHVYGGSMSAES MIYEPLVRNTKDGIKPLLAKKWDISPDGKTYTFHLRDDVSFHDGTKFDADAVKKNIDAVQ QNKKLHSWLRLSTLIDDVKVKDKYTIQLHLKEAYQPALAELAMPRPYVFVSPKDFKHGTT KDGVKSFDGTGPFKMGEHKKDISAEFNKNNQYWGEKAKLNKVEAKVKPAGETAFLSMKKG ETNFAYTDDRGTDSLDKDSLKQLKETGSYQVKRSQAMNTKMLVVNSGKKDSAVSDKAVRQ ALGHMVNRDKIAQDILDKQEKPATQLFAKNVTDINFNLPTRTYDKKKAQALLDKAGWVLS KDRQVRQKEGKDLNLKLYYDKGSSSQKEQAEFLEAEFKKLGVQLDINGETSDKVAERRSS GDYDLMFNQTWGLLYDPQSTLAAFKTKTGYESATLGIKNKTQLYKDIDDAFKIQDAKARS KAYQQILKQVDDEGVFIPITHGRMTVVAPKDLQKLSFTQSQYELPFNEMQYK >gi|224999851|gb|ACJC01000149.1| GENE 27 31069 - 32004 989 311 aa, chain + ## HITS:1 COG:SA2254 KEGG:ns NR:ns ## COG: SA2254 COG0601 # Protein_GI_number: 15928045 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 311 1 311 311 467 81.0 1e-131 MVKFIMKRLTLMIPLLIVVTFMTFMMTYLTNEDPAVTILHAQGTPNITEDLIAETKEKYG LNQPIFTQYKNWLVDALQFKFGTSYITGDPVSERMGPAFMNTLKLTLISSVVVMITSVVL GIVSALTSGRFTDRAIRSIAFLLTALPSYWVASILVIYVSVKLNLLPTSGLTGPESYILP VFVITITYAGIYFRNVRRSMLEQLNEDYVLYLKASGVPRLTMLLHVLRNALQVAVSIFCM SIPMIMGGLVVIENVFAWPGLGPLSVKAITEHDFPVIQAYVLIVAVLFILFNTLADIINA ILNPRLREAMK >gi|224999851|gb|ACJC01000149.1| GENE 28 32001 - 32879 718 292 aa, chain + ## HITS:1 COG:SA2253 KEGG:ns NR:ns ## COG: SA2253 COG1173 # Protein_GI_number: 15928044 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 286 1 286 289 413 79.0 1e-115 MIVLRRLFQDRGAIVAIAIITIYVVLGVLAPLITFYEPNHIDTANKFAGISWSHWLGTDH LGRDVLTRIIYAIRPSLLYVFVALIISVVIGAILGFISGYFPGYIDAIIMRICDVMLAFP SYVVTLALITLFGMGVENIIIAFILTRWAWFCRVIRTSVMQYIEADHVKFAKVIGMNDLT IIRKHILPLTFTDIAIIASSSMCSMILQMSGFSFLGLGVKAPTAEWGMMLNEARKVMFTH PGMMMTTGVAIVIIVMAFNFLSDALQMAIDPRMSSKEKRLALKKGVKAHDIA >gi|224999851|gb|ACJC01000149.1| GENE 29 32866 - 33681 417 271 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 3 254 8 262 563 165 37 2e-67 MTLLKVAHLRIKDTWSDETLVDNVNFTVQCGETLGIIGESGSGKSITCKALIGLNAQRLS VSGDIFFKHQNLNTITEKQLRKIRGKDIAMIMQQGTRAFDPSTKVGKQMIETLRAHTTLS KQQIKQELIHYMTYMKLKDPRSLLKAYPYMLSGGMLQRMMIALALALKPKLIIADEPTTA LDTITQYEVINAFKDIKQHFDCAMIFISHDLTVINKIADRVVVMKEGRVIEEGRTNMVLQ QPRHHYTAYLLSTKKTIHDYFQLVLRGDFNA >gi|224999851|gb|ACJC01000149.1| GENE 30 33674 - 34423 358 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 1 243 11 262 329 142 33 8e-33 MLKVQNVIKFYGKKSIFRDKRIPVVKGVSFDCPTGASIAIIGESGSGKSTLSRMILGLEK PDQGQVTLDGQPVHFKKVRRHRIAAVFQDYTSSLHPFHTVKDILFEVMNQCRCTSKENME EYVTALLREVGLKSDCLYCYPHMLSGGEAQRVAIARAICMQPDYILFDEAISSLDMSMQT QILDLLKRLRHSHQLSYIFITHDIQAATYICDDLLIFKNGCIEARTSINELHRQQNGYTR ELIDKQLSI >gi|224999851|gb|ACJC01000149.1| GENE 31 34435 - 35625 1163 396 aa, chain + ## HITS:1 COG:SA2250 KEGG:ns NR:ns ## COG: SA2250 COG0477 # Protein_GI_number: 15928041 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 388 1 388 397 531 78.0 1e-151 MKGAMSWPFLRLYILTLMFFSANAILNVFIPLRGHDLEATNTVIGIVMGAYMLTAMLFRP WAGQIIARVGPIKVLRIILLINAMALVLYGFTGLEGYLVARIMQGVCTAFFSMSLQLGII DALPEKYRSEGVSLYSLFSTIPNLLGPLIAVGIWHVENMTIFAIVMIFIAVTTTLFGYRT TFANTQKEVAPKEEVLPFNAMTVYVQFFKNKALFCSGMIMILSSIVFGAMSTFIPLYTVR EGFANAGIFLTIQAITVVIARFYLRKYVPSDGLWHHRFMMIVLTLLMIASIIVAFGPQIL SIFVYISAIFIGITQALVYPTLTTYLSFVLPKIGRNMLLGLFIACADLGISLGGVLMGPI SDTVGFKWMYILCALLVTIAMILSKIRQGQSVSKAS >gi|224999851|gb|ACJC01000149.1| GENE 32 36370 - 38616 2894 748 aa, chain + ## HITS:1 COG:SA0218 KEGG:ns NR:ns ## COG: SA0218 COG1882 # Protein_GI_number: 15925929 # Func_class: C Energy production and conversion # Function: Pyruvate-formate lyase # Organism: Staphylococcus aureus N315 # 1 748 1 749 749 1433 91.0 0 MLETNNHTNAWQGFKTGRWNKNIDVREFIQLNYSLYEGDDEFLEGPTKATETLWDQVMQL SKEERERGGMWDMDTKVASTITSHDAGYLDKDLEKVVGVQTEKPFKRSMQPFGGIRMAKA ACEAYGYELDPETEKIFTEYRKTHNQGVFDAYSREMLNCRKAGIITGLPDAYGRGRIIGD YRRVALYGVDFLMEQKLKDFNTMSTEMSEDVIRLREELSEQYRSLQDLKELGQKYGFDIS RPATNFKEAVQWLYLAYLAAIKEQNGAAMSLGRTSTFLDIYAERDLQNGDITEQEVQEII DHFIMKLRIVKFARTPEYNELFSGDPTWVTESIGGVGIDGRPMVTKNSFRFLHSLDNLGP APEPNLTVLWSTRLPENFKIYCAKMSIKTSSIQYENDDLMRESYGDDYGIACCVSAMKIG KQMQFFGARANLAKALLYAINGGKDEKSGKQVGPSYEGIKSDVLDYDEVFERYEKMMDWL AGVYINSLNIIHYMHDKYSYERLEMALHDTEIIRTMATGIAGLSVAADSLSAIKYAQVKP IRNEEGLVTDFKIEGDFPKYGNNDSRVDEIAVDLVERFMTKLRSHKTYRNSEHTMSVLTI TSNVVYGKKTGNTPDGRKAGEPFAPGANPMHGRDQKGALSSLSSVAKIPYDCCKDGISNT FSIVPKSLGKEEADQNKNLTSMLDGYAMQHGHHLNINVFNRETLIDAMEHPEEYPQLTIR VSGYAVNFIKLTREQQLDVISRTFHESM >gi|224999851|gb|ACJC01000149.1| GENE 33 38638 - 39393 775 251 aa, chain + ## HITS:1 COG:SA0219 KEGG:ns NR:ns ## COG: SA0219 COG1180 # Protein_GI_number: 15925930 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyruvate-formate lyase-activating enzyme # Organism: Staphylococcus aureus N315 # 1 251 1 251 251 457 90.0 1e-129 MLKGHLHSVESMGTVDGPGLRYILFTQGCLLRCLYCHNPDTWKINEPSREVTVDEMVNEI LPYKPYFEASGGGVTVSGGEPLLQMPFLEQLFKELKANGVHTCIDTSAGCVNDTPAFNRH FDELQKHTDLILLDIKHIDNDKHIKLTGKPNTHILKFARKLSDMKQPVWIRHVLVPGISD DKEDLIKLGEFINSLDNVEKFEILPYHQLGVHKWKNLGIPYQLENVEPPDDEAVKEAYRY VNFNGKIPVTL >gi|224999851|gb|ACJC01000149.1| GENE 34 39535 - 40752 1510 405 aa, chain - ## HITS:1 COG:SA1814 KEGG:ns NR:ns ## COG: SA1814 COG0624 # Protein_GI_number: 15927582 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Staphylococcus aureus N315 # 1 405 1 406 407 504 60.0 1e-143 MTVLSEQDKIRLLADIVKIQTENDHEIKVCEYLKDLLSQYDIDSKIVKVNDSRANLVAEI GSGAPVLAISGHMDVVDAGDHDDWTFPPFELTDKDGKLFGRGTTDMKGGLMAMVIAMIEL KQSNALKQGTIRLLATTGEETEQYGAQLLADEGYLDDVSGLIIGEPTSNIAYYAHKGSMS CVVTAKGKAAHSSMPHLGTNAVDILVDFVNEMKQEYKNIKEHDKVHELDAVPMIEKHLHR KIGEEESHIYSGFVMLNSVFNGGKQVNSVPHKATAKYNVRTVPEYDSTFVKDLFEKVIRH VGEDYLTVDIPSSHDPVASDRDSPLIQNITRIAPNYVHEDIVVSALIGTTDASSFLGTNE NNVDFAVFGPGESIMAHQVDEFIRKDMYLSYIDVYKDVFKAYLEK >gi|224999851|gb|ACJC01000149.1| GENE 35 41100 - 42461 1248 453 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 2 448 1 447 449 530 72.0 1e-150 MMKNKLTLKENLFIGSMLFGLFFGAGNLIFPIHLGQTAGANVWTANLGFLITAIGLPFLG IIAIGVSKTNGVFEISSRISKIYGYLFTIGLYLVIGPFFALPRLATTSFEIAFSPFISSG TAQALLPIFSILFFGVAWLFSRKPSKILDYIGKFLNPVFLILLGIVVVLAFIRPMGGISH APVSADYSNSVLLKGFIDGYNTLDALASLAFGIIIVTTIKKLGITNPNTIAKETLKSGTI SIIAMGVIYTLLALMGTMSLGRFKVSENGGIALAQIAQHYLGDYGIIILSLIIIVACLKT AIGLITAFSETFTELFPKSNYLWLATGVSILACIFANVGLTKIIMYSTPVLMFIYPLAIT LILLALLSPLFKHSKIVYRFTTLFTMVAAFVDGVKASPEFFVNTKFAQTIIGFGENYLPF FNIGMGWIVPALIGFIIGIIVYFMTAKKSSHVQ >gi|224999851|gb|ACJC01000149.1| GENE 36 42928 - 43467 554 179 aa, chain + ## HITS:1 COG:slr0895 KEGG:ns NR:ns ## COG: slr0895 COG1309 # Protein_GI_number: 16331647 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 10 169 17 178 187 121 38.0 6e-28 MPRTSKRQLILESAAAIINEKGADYLTLDAVAQRAGISKGGLFYHFKSKDELIKELVNYA NNLYRDNVNQHIDNEKNKKGQWLNAFIEATRAHRTDNAPITSGMLAAQGTNRSLLSPLKT SYQEWQYQITHDGLDEVDATIIRLAVDGLWLSEIFGISAIDEEMREKVIERLKMQIEKN >gi|224999851|gb|ACJC01000149.1| GENE 37 43605 - 44498 1210 297 aa, chain + ## HITS:1 COG:PA5387 KEGG:ns NR:ns ## COG: PA5387 COG3246 # Protein_GI_number: 15600580 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Pseudomonas aeruginosa # 2 289 3 292 294 273 52.0 3e-73 MQKVVLTAAITGAGDTIQKNENVPVTPQELADSAIKCARAGATVAHIHVRDPETGGVSHD PELYAETVRLIREADEDIVINVTSGGGGDFIPSLEHPETGGEGTWIQTPEERFKPIGDLL PEMCTLDCGSVNMGDAIYLSPASWLRKQAQMVKDAGVKPELECFDTGHVSFAKQMIEEGL IDGDPMFQFCLGIPWGAENDPETIEYLKSRIPENAHWSAFGIGKMQLPTVREVAQRGGNV RVGLEDNIYLRKGVKATNEALVEEAKRILAGLDIEPLTPAEAREKFNLRNPHGKGDK >gi|224999851|gb|ACJC01000149.1| GENE 38 44498 - 45460 1233 320 aa, chain + ## HITS:1 COG:PA5386 KEGG:ns NR:ns ## COG: PA5386 COG1250 # Protein_GI_number: 15600579 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxyacyl-CoA dehydrogenase # Organism: Pseudomonas aeruginosa # 3 297 10 304 321 309 51.0 4e-84 MKFAVVGTGVIGSGWITRMLAHGHEVIATDPSEGAYERMLTQVKQNWPYAEQMGLAENAS IQNLTFTPHLEEAVKDADHIQENVPEVEEIKDAVLKEIDFYAKPEATIGSSTSGIMPSEL QANLSHPERLVVAHPFHPVYILPLVEIVPGKQTSEETTVKAEQIYESIGMDVLHVRHEIE GHIADRLMEALWRESLHIVNDGIATTEEVDKAFTHAAGLRYAQYGPFMTFHLAGGEGGMR HMLKQFGPALKKPWTKLIAPELTDDLYHKVVNGSEASSQGYTMSELDQKRNEFLIKVKEL AEQYWPSDSKAMKKSNGAEL >gi|224999851|gb|ACJC01000149.1| GENE 39 45463 - 45948 425 161 aa, chain + ## HITS:1 COG:SA2138 KEGG:ns NR:ns ## COG: SA2138 COG0824 # Protein_GI_number: 15927928 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Staphylococcus aureus N315 # 1 160 1 161 161 102 36.0 4e-22 MNQQYVFHTKVHRDWVDHNGHLNDAMYNRIFSDTTDDWLGHLGLTIDAIQSYQYTVFTLE NHVMFLNEMKENEDVIVKVHLHDYDSKRLHVLMEMFNADDDLCATYEVMLMGIDTTSGRP SAFPNDILNNIKRYYNIENVETTSQYIGHRIGIKKKSKSKE >gi|224999851|gb|ACJC01000149.1| GENE 40 46083 - 47270 1482 395 aa, chain + ## HITS:1 COG:SA2237 KEGG:ns NR:ns ## COG: SA2237 COG1125 # Protein_GI_number: 15928027 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 383 3 384 410 576 78.0 1e-164 MLSIKNLSKVYAGGKKAVDNMTIDIESGDFIAFIGTSGSGKTTALRMINRMIESTEGEIT IDGKNIKELNPVELRRSIGYVIQQIGLMPHMTVKENIVLVPKLLKWSQEKKDEKAKELIR LVDLPEEYLDRYPSELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLVKK LQQQLGKTFIFVTHDMDEAIKLADKICIMTNGQVVQYDTPDNILRSPANDFVRDFIGQNR LIQDRPNIRTVKDAMIKPVTVHVDRSLNDAVNIMREKRVDTIFVVGNDEHLLGYLDIEDI NEGLRHHKELIDTMQRDIYRVRIDSKLQDSVRTILKRNVRNVPVVDSDNKTLLGLVTRAN LVDIVYDSIWGELESDNNDNHSGIVEPESTGVETP >gi|224999851|gb|ACJC01000149.1| GENE 41 47267 - 47902 565 211 aa, chain + ## HITS:1 COG:SA2236 KEGG:ns NR:ns ## COG: SA2236 COG1174 # Protein_GI_number: 15928026 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Staphylococcus aureus N315 # 1 210 1 210 211 274 78.0 1e-73 MIKFISEHSGMLFTKTFEHLYISIVALVIAIIVAVPLGILLSKKEKLSKVSLTIAGVLQT IPTLAVLALMIPLFGVGKTPAIIALFLYVLLPILNNTIIGIQNIDSNLREAGRSMGMTNF QLMKDVELPLALPLILSGIRLSSVYVISWATLASYVGAGGLGDFIFNGLALFEPSMIITA TILVTAIALIVDYVLSLIEKWVVPKGLKVSR >gi|224999851|gb|ACJC01000149.1| GENE 42 47921 - 48880 1103 319 aa, chain + ## HITS:1 COG:SA2235 KEGG:ns NR:ns ## COG: SA2235 COG1732 # Protein_GI_number: 15928025 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Staphylococcus aureus N315 # 1 319 1 312 313 468 74.0 1e-132 MKNYKKYLIVLVLCLTVLSGCNLPGLKNSHSDDDVRITSLGTSESQIISHMLRLLIEHDT KGEIKPTLINNLGSSTIQHNAVTSGQANMSGTRYTGTDLTGALKEDPIKDPKKAMKATQE GFKKKYNQTFFNSYGFENTYALIVTKETAKKYHLETVSDLEKHAKDLRVGMDSSWMDRKG DGYPAFKKEYGYSFGTVRPMQIGLVYDALSSGKLDVAVGYSTDGRISAYDLKVLKDDRRF FPPYDASPLASDQLLKEKPELKPIVKKLEGKISTEQMQELNYQADGKGKEPATVAEDFLK KHHYFEDDDNKKGKQKGGQ >gi|224999851|gb|ACJC01000149.1| GENE 43 48883 - 49530 880 215 aa, chain + ## HITS:1 COG:SA2234 KEGG:ns NR:ns ## COG: SA2234 COG1174 # Protein_GI_number: 15928024 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Staphylococcus aureus N315 # 1 215 1 215 231 267 84.0 1e-71 MEGNLIQQLVHYYQMNFGYLWELFVNHLLMSVYGVLLACLVGIPLGIIIARFGKLSGVII TIANIIQTVPVIAMLAILMLSMGLGMNTVIFTVFLYALLPIIKNTYTGINEVDPNIKDAG KGMGMTRNQVLTMIELPLSLSVIIGGIRIALVVAIGVVAVGSFIGAPTLGDIVIRGTNAT DGTLFILAGAIPIVIIVILIDVLLRLLEKKLDPAT >gi|224999851|gb|ACJC01000149.1| GENE 44 49571 - 50338 884 255 aa, chain + ## HITS:1 COG:SA2422 KEGG:ns NR:ns ## COG: SA2422 COG0627 # Protein_GI_number: 15928215 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 247 1 247 253 329 64.0 3e-90 MAHITLNYLSKTLGMHQTINVILPEDKSYFDTNENAKPLKTMLLLHGLSSDTSSYMRYTS IERYANTHQLAVVMPNADHSFYSNMAYGHSYYDYILEVYDYVHQIFPLSKKREDNFIAGH SMGGYGAIKFALTQSYRFSKAAMLSAPYDVSMIGQYQWYDFTPEAIVGNTQHVAGTSFDP YYLVEQAIDNGQTLPQLYITCGTEDELYQGNIDFVNYLDEKGIPYQFKKAPGNHDYAFWD KAIEDVIDRFTSSHI >gi|224999851|gb|ACJC01000149.1| GENE 45 50609 - 52174 1472 521 aa, chain - ## HITS:1 COG:SA1014 KEGG:ns NR:ns ## COG: SA1014 COG1288 # Protein_GI_number: 15926754 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 4 521 1 518 518 904 92.0 0 MKPLEQAINDNKKKKRFNFRMPGAFMILFILTVVAVIATWIIPAGAYSKLSYEPSSQELK IVNPHHQVKKVPGTQKELDRLGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGLDQITS SMVKGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTQKTKGHEFMLIAFVSILMII GGTLCGIEEEAVAFYPVLVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNA AGTTFTDGLYWRIGACIIGAIFVISYLFWYCKKIKKDPKSSYSYEDKAAFEKQWSVLHDD GSSEFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLG EKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIV LLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLV MATLQMLNMRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS >gi|224999851|gb|ACJC01000149.1| GENE 46 52339 - 53271 1191 310 aa, chain - ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 1 310 1 310 310 538 89.0 1e-153 MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNY AAEHDQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGIDKQVVTLVTQVEVDEGDPAF NSPSKPIGLFYTKEEAHRIQQEKGYQFVEDAGRGYRRVVPSPQPISIIELKSIKTLIEND TLVIAAGGGGIPVIREQHDSFKGIDAVIDKDKTSALLGADIHCDQLIILTAIDYVYINYH TDKQQALKTTNIDTLKTYIEEEQFAKGSMLPKIESAISFIENNPNGSVLITSLSQLDAAL EGKIGTLITK >gi|224999851|gb|ACJC01000149.1| GENE 47 53294 - 53779 521 161 aa, chain - ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 1 161 173 333 333 308 90.0 3e-84 MQGAAIMGMNFHLVCPKELNPTEELLNRCERIAAENGGNILITDDIDKGVKDSDVIYTDV WVSMGEPDEVWQERLKLLKPYQVNQTLLEKTGNPNVIFEHCLPSFHNAETKIGQQIYEKY GISEMEVTDDVFESKASVVFQEAENRMHTIKAVMVATLGEF >gi|224999851|gb|ACJC01000149.1| GENE 48 53832 - 54293 546 153 aa, chain - ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 1 151 1 151 333 302 98.0 1e-82 MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTR CAFEVAAHDQGAHVTYLGPTGSQMGKKETAKDTARVLGGMYDGIEYRGFSQRTVETLAQY SGVPVWNGLTDEDHPTQVLADFLTAKEVLKKVC >gi|224999851|gb|ACJC01000149.1| GENE 49 54777 - 55001 315 74 aa, chain + ## HITS:1 COG:no KEGG:SERP2350 NR:ns ## KEGG: SERP2350 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 74 1 74 74 103 97.0 3e-21 MKVYKLNYQHHKDIVDNNVLTMFVTADNQDEVEAFAKKLHYKIEHLSPLTKKEFEEEKAK DSHYRLEHVDHYLN >gi|224999851|gb|ACJC01000149.1| GENE 50 55106 - 55288 176 60 aa, chain + ## HITS:1 COG:BS_yndN KEGG:ns NR:ns ## COG: BS_yndN COG0346 # Protein_GI_number: 16078847 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Bacillus subtilis # 1 53 1 53 144 65 54.0 2e-11 MEITSVNHICFSVSDLNTSIQFYKDILQGDLLVSGRTTAYLTIGHTWIALNQEKIYQVMK >gi|224999851|gb|ACJC01000149.1| GENE 51 55243 - 55533 71 96 aa, chain + ## HITS:1 COG:SA2124 KEGG:ns NR:ns ## COG: SA2124 COG0346 # Protein_GI_number: 15927913 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 8 93 53 138 139 117 66.0 4e-27 MDCTESRKNIPSNEINHSYTHVAFSIDEEDFQKWIQWLKENQVNILKGRPRDIKDKKSIY FTDPDGHKIELHTGTLKDRMEYYKSEKTHMQFYDEF >gi|224999851|gb|ACJC01000149.1| GENE 52 55643 - 56518 921 291 aa, chain + ## HITS:1 COG:SA0295 KEGG:ns NR:ns ## COG: SA0295 COG2503 # Protein_GI_number: 15926008 # Func_class: R General function prediction only # Function: Predicted secreted acid phosphatase # Organism: Staphylococcus aureus N315 # 1 291 1 296 296 381 72.0 1e-105 MNKLSKYIAIATLASTVTISAPIHTYACESHTKDNHNHTTQHQNDPNLGEQNVMAVSWYQ NSAEAKALYLQGYNTAKYQLDEHIKKHKGKKKLAIALDLDETVLDNSPYQGYASMHDTSF PEGWHEWVAAAKAKPVYGAKSFLKYADKKGIDIYYISDRDKEKDFKATKENLKNIGLPQA KDNHILLKGKNDKSKASRRQQVEKNHKLVMLFGDNLLDFTDPKKSTAKEREKLVQKHEKD FGTKYIIFPNPMYGSWESTLYHNNYQISKNEKDTLRKASIKQFNPKTGEVK >gi|224999851|gb|ACJC01000149.1| GENE 53 56820 - 57785 1103 321 aa, chain + ## HITS:1 COG:SA2213 KEGG:ns NR:ns ## COG: SA2213 COG0502 # Protein_GI_number: 15928003 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Staphylococcus aureus N315 # 3 320 1 318 335 517 77.0 1e-147 MTLNLAQRVLNQESLSKDEAISIFENAEIDTFDLLNEAYTVRKHYYGKKVKLNMILNAKS GICAEDCGYCGQSVKMKEKQRYALVEQDQIKEGAQVATENQIGTYCIVMSGRGPSNREVD HICETVEDIKKVHPQLKICACLGLTKEEQAKKLKTAGVDRYNHNLNTSERYHDEVVTTHT YEDRVNTVEMMKDNHISPCSGVICGMGESNEDIIDMAFALRAIDADSIPINFLHPIKGTK FGGLDLLSPMKCLRIIAMFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLIT GGQPNEEDYRMIEDLGFEIDS >gi|224999851|gb|ACJC01000149.1| GENE 54 58090 - 59193 1403 367 aa, chain + ## HITS:1 COG:SP0253 KEGG:ns NR:ns ## COG: SP0253 COG0371 # Protein_GI_number: 15900188 # Func_class: C Energy production and conversion # Function: Glycerol dehydrogenase and related enzymes # Organism: Streptococcus pneumoniae TIGR4 # 5 365 3 362 362 331 45.0 2e-90 MSKFIYQSPGRYVQGKGIVSSIAEETERLGSHALIIADEVVWNITEEKIKESFSANNNVD FEYEVFKGESSEEEIQRIAKQYKEKNIDVVIGLGGGKALDTGKAVAFELKASVIDFASTA SMDAPTAAVSVIYNEDGSFSGYEFYPKNPDTVIVDSEIVAQAPVRLFASGMSDGLATLIE VESTLRRQGQNMFHGKPTLASLAIAQKCEEVIFEYGYSAYTSVEKHIVTPQVDAVIEANT LLSGLGFENGGLAGAHAIHNGFTALEGDIHHLTHGEKVAYGILVQLVLENAPTEKFMKYK TFFDNINMPTTLEGLHIENTSYEELVQVGERALTPNDTFANLSDKITADEIADAILTVND LSKSQFN >gi|224999851|gb|ACJC01000149.1| GENE 55 59209 - 60171 1405 320 aa, chain + ## HITS:1 COG:SA0605 KEGG:ns NR:ns ## COG: SA0605 COG2376 # Protein_GI_number: 15926327 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Staphylococcus aureus N315 # 1 320 1 320 321 452 70.0 1e-127 MKKLIQDKNTILKDMLDGITVSNNDVEVVSDTIVVRKHKKQSGVALVSGGGSGHEPAHAG FVAEGMLDAAVCGEIFTSPTPDKILDAIKAVDNGDGVLLVIKNYAGDVMNFEMAQEMAQM EDIKVESVIVRDDIAISDPEKRRGVAGTVFVHKYAGYLAEKGVALDEIKSKVEALLPDIK SIGMALTPPMVPTTGKNGFDIEDNQMEIGIGIHGEKGLHREDVQPINVIVERLLDQLYKE IEKKPLIVMVNGMGGTPLSELNIVTKYLDEQFNQNDIDVKQWFVGDYMTALDMQGFSITV LPFSEEVSEALAAPTASKYF >gi|224999851|gb|ACJC01000149.1| GENE 56 60226 - 60801 920 191 aa, chain + ## HITS:1 COG:SA0606 KEGG:ns NR:ns ## COG: SA0606 COG2376 # Protein_GI_number: 15926328 # Func_class: G Carbohydrate transport and metabolism # Function: Dihydroxyacetone kinase # Organism: Staphylococcus aureus N315 # 1 191 1 191 194 244 68.0 6e-65 MNVADIKARLLDLENTFKEKESELTDLDRAIGDGDHGVNMVRGFEHLKEKIDDQSMQALF KSTGMTLMSNVGGASGPLYGFGFIKMASAVNDEIDHDNLKDVLKAFADGIQQRGKVELNE KTMYDVIERARKAVENDETVDLDKLQSFANETKDMVATKGRASYFNEASKGYIDPGAQSS VYILNAIIGGE >gi|224999851|gb|ACJC01000149.1| GENE 57 60805 - 61179 551 124 aa, chain + ## HITS:1 COG:SA0607 KEGG:ns NR:ns ## COG: SA0607 COG3412 # Protein_GI_number: 15926329 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 121 1 120 120 122 53.0 1e-28 MTSIVVVSHSHKIAEGVKQLINQMTDGGVDLIAVGGLSDDEIGTSFDQIVSVINGLENDA LCFYDIGSAGMNLDTALEMYEGDHKIVKMEAPIVEGSFIASVGIKSNMSMDSVISEVRAK YPEE >gi|224999851|gb|ACJC01000149.1| GENE 58 61481 - 62110 488 209 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00160 NR:ns ## KEGG: SLGD_00160 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 12 209 1 197 199 235 66.0 8e-61 MIIKYLIEVILLSEFLAAIVGGIFTLAGTFIALWFQFRKDDKDKRKDYHNDQVSSLDVTA YKAAKVRNNYLNFETSNFSKENTMEIYQDIETDFKSLDTHVQNLISLMSHHSDQSNTIIQ KLLGSYEPVENQYNKLKVAYKIYHHQYNTPDFDKNGITFSKRKLDIEIDQFIDKLEAFAK TEYANHQLYKPTLNPTVDKSDAIYRNKKY >gi|224999851|gb|ACJC01000149.1| GENE 59 62350 - 62703 455 117 aa, chain - ## HITS:1 COG:L157472 KEGG:ns NR:ns ## COG: L157472 COG0477 # Protein_GI_number: 15672136 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Lactococcus lactis # 1 113 278 390 393 106 50.0 9e-24 MYPVLLSFTFGLIILGFTHTSMILLIAAAFIGFGYGTIVPTAQAIAIQQSPANKMGLATS TFYIFADFGAGMGPFILGIIIPFIGYRHLYMAMGMLVIIALILYYYVHGRMHKNPFN >gi|224999851|gb|ACJC01000149.1| GENE 60 62968 - 63213 311 81 aa, chain + ## HITS:1 COG:no KEGG:SERP2341 NR:ns ## KEGG: SERP2341 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 81 2 82 82 100 92.0 1e-20 MIHLQNILPVIIYAVLLAIHYFLSRTGNKILGLIVPVGVIASLIYMYQADIIHMKLIGVI IIGIVALLFLAEEWQRAQKDK >gi|224999851|gb|ACJC01000149.1| GENE 61 63785 - 65203 1645 472 aa, chain + ## HITS:1 COG:SA1970 KEGG:ns NR:ns ## COG: SA1970 COG0477 # Protein_GI_number: 15927747 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 470 1 471 480 409 52.0 1e-114 MSNISMTTSKRNAIVTVMLISAFVSMLNQTILNTALPAIIKGLNITETTAQWLITGFMLV NGIMIPLTAFLMDKYSTRHLYIFSMAIFLIGSIIAAFSPTFTILMISRIIQAIGAGILLP LMQFTVFTLFPAEQRGFAMGLAGVVVQSAPAIGPTLTGLFVDLFSWRMPFYLVSAIAAVA FILGFFFVENNTKTKDIVLDKISVVYSTFGFGLILFAFSSVSTFGITSLPVIVTFVLGIA IIIIFTTRQLKLKHPLLNMRVFKNKVFTLSAVSSMLVYITMVSPALLIPIYIQTGLGQSA LLSGVVVLPGAVINGLTMVYTGKIFDKHGIKVLVIPGFILLISMTFLYSFLTTGTPYWFV ILVYTIRMIALGLLVMPLNTVGLNALESDDVSHGTAIMNSLRIIAGAMGTAISVTILSIV AKQYTASHATMSKMKLTQEATVHGIDVAFIFTTVLIIIGFILALFIKEEKNH >gi|224999851|gb|ACJC01000149.1| GENE 62 65654 - 66964 830 436 aa, chain + ## HITS:1 COG:SA0172 KEGG:ns NR:ns ## COG: SA0172 COG0477 # Protein_GI_number: 15925882 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 24 427 1 406 416 387 56.0 1e-107 MRLITFFKGLKSIICFNRERRMNVKQLSTTLKVRLICDFFQNIIVTAFLPFIALYLTDMV NQHFAGLFLFALVMINFPISLISGHFIERLPKKTLTLSYQLILSLMLVVMAITISEQAYM IILFCIAYAIFSITIGMQQPIMDTIIMDAITPEVEQYIYKISYWLTNIAVALGALIGGLM YGAHKSILFFIAFAIYIMVFIALFIWLPNDLNQVNQSYTHHANEQQFSVGQILKSYKPAF KDTTYLLLIIGFSILTMGELSVSSYISVRLKQEFDPMILFSLHINGVKMYSLLLMTNTTI VIIFTYFISKIVMKMDVKTALLIGIIFYVIGYSNLTYLNDFTLLIIFMIIATIGEMVYSP ILEENRFKMVPSHKRGTYSAVHALGFNLAELLARFGIILGVFLTSMEMGIYMFVLLLLGG MSLYIAVSRFNNANSQ >gi|224999851|gb|ACJC01000149.1| GENE 63 67123 - 74325 6854 2400 aa, chain + ## HITS:1 COG:SA0173_2 KEGG:ns NR:ns ## COG: SA0173_2 COG1020 # Protein_GI_number: 15925883 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Staphylococcus aureus N315 # 1020 2054 5 1049 1053 1199 57.0 0 MSYFGNEYERRTLMNIEALYFQKYFYFKHLNQSSSEHRVTYWVKLSRDIELHRLMYALLD VVQNQPVLRTQFVTDDFNQLKINLRDFFPFIEIQEVNEMSQSIDLEAFFTRNLNSYHFNQ LPLFNFKIYQFLDEAYLLLDFHATIFNESQLTPFLQQLNIAYTHSLKSEYSISDFYNWIK EMNQKMDQNQAVYPSKHFNVLSADGDNYAYIPVKNTCEKKKMCSLHTELPSLDIDAWIVS IYLAHHFISQSSDVTLGIHFSIDNKNTGNMMVLNTDIVPLNLSISQSDAVKDMVDECSAL LEELQMCGASFVVQPKAVQTDVETMIHIEKVQEQFELNHICHHIHRLYNEASSLADLEFY PHVQGGFDIVYNDNVYDDLTVHTLVKLINGIYMQITQNPSLLIKDIKLSDRSDLAKYNDI NLQNNDINYSEVTYKTVVERFEHQVHQHPDSIALQYEQQSMTYHQLNQCANLLAYKLRLN NQIEPNDMVALIAERSLEMIIGMLGILKAGAGYIPIDPDYPEERINYIIEDAKPKAVLTY RTSFQSDLPQMDIEFIVGSREQEIDNPRGINCSEDIAYVIYTSGTTGKPKGTLVPHRGID RLVHNPNYVELNENTAVLLSGTVAFDAATFEIYGPLLNSGRLVITSKDTLLNPQLLDQAI TENKVNTMWLTSSLFNQIASERIEALESLTYLLIGGEVLNAKWVHLLNSRECHPQIINGY GPTENTTFTTTFAIPQEMPSRIPIGLPISGTTVYVMQGERICGVGVPGELCIGGAGLAKG YLNQPKLTAERFIQSPFNNEMLYRSGDLVRLQEDGNIDYISRIDKQVKIRGFRIELSEIE KALEAIRDINKAVVIVREQDQDKQIVAYYEASQLKSTGQLKDILSGTLPEYMIPVHFMKV DRIPITMNGKLDVRALPEINLKNNRNYVEPRNDIERTVCRIFEEILHVDQVGVKDNFFEL GGHSLRATLVVNRIEERLKKRLKVGDLMKSPTVEQLGQQIEELQNDVYDVIPKANESYQY DLSASQKSMYLLWKVNPKDTVYNIPFLWRLSSELNVMQLQRALSKLIERHEILRTQYVID DNEVKQRIATHVLPDFEEVTTSLTNEQDIIQSFMEPFDLEQPSQMRVKYIHGPQQDYLFM DTHHSINDGMSNTILLSDLNALYQDKSLPELKLQYKDYSEWMVHRDLSKQRHFWLQQFEN QVPILNMPTDYPRPSIKTTNGNMLSFHYNHQIKQQLKSYVEQHQVTDFMFFASAIMVLLH KYTRQDDIAIGSVISARTHRDTENMLGMFANTLVYRGRPHDQKTWDQLMAEMKEMCLGAY EHQEYPFENLVNDLVDERDASHNPLFDVMLVLQNNETNHANFGHSQLTHIPPQSTTAKFD MSFIIEEDQDGYVVNIEYNTDLYKQETIHHIAEQLQMIIKHVISTENLKIQDIDENDDLL IWLDKYVNDCSLDLPKNKSIQQLLHDVMKAKADDVALKMNGQSMTYQELDDYSNSIAQTL IHNGIQKGERVALLTERSFEMVASMIAVLKVGGSYVPIDVTYPDKRIEFIIKDAEVAAVL TYGKTISSHIPVIKIEDIDNTENNKSLNIEYAGNLEDDLYHIYTSGTTGKPKAVSVKQRN ILNLVCAWTKRLNLSDDEVYLQYANYVFDASATDFYCSLLNGYPLVIATSVERTNTDLLE KLISQENITIASIPLQVYNVMHHFYIPKVITGGATSTPAFVQHISKHCDMYVNAYGPSEN TVIASCWIYKKGDAIPSTIPIGKPLANVDIFIMSGGKLCGVGIPGELCIAGESLTSGYLN RPELSAEKFIENPFGPGQLYRSGDLARLMPDGQIEFLGRIDKQVKVHGYRIELGEIENII NSVDTVTDSVVILAKQSEHEVLHAYYVGSQEDENHISQHLNQYLPKYMIPNTLTAISEIP LTGNDKVDESKLPVPNVHKNKFVAPRNNIEREIAQIVSGVLDVSSMSIDDDFFEMGGTSL DAMVVVSKLKSNGIHITMQDVYQFKTVRYIANHTKTRQALPEVVLPDHLPQLQSLVERRY QLKPQHLAQSSLGHVLLTGATGFLGAYLIDEMQDNADQITCIVRGHDINQAKNNLENNLN CYFDMAHVDKLMKHIDIVLADLSELDHLIIDSAIDTIIHAGARTDHFGDDETFFDVNVRS TQALIDLAKDKKAKLIYISTISVGTVFKAHQDDISFSEKDLYKGQLFTSPYTKSKFYSEI KVLEAVNEGLAAQIIRLGNLTSASTGPLNMKNLTTNRFSIVMHDLLKMPFIGESISKAKV EFSFIDVTARHIIKLARSNAIPIIYHVYAPRSITMKQVIDNAKGSEMTVVSDSEFEQKLH ELGMHELIGLNSNGDNQISGVTDSNMTQTVMKELQGEWPHLSCQWLQQWYHLLFEKFDAN >gi|224999851|gb|ACJC01000149.1| GENE 64 74458 - 74958 345 166 aa, chain + ## HITS:1 COG:SA0174 KEGG:ns NR:ns ## COG: SA0174 COG2091 # Protein_GI_number: 15925884 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantetheinyl transferase # Organism: Staphylococcus aureus N315 # 1 166 42 212 214 165 47.0 4e-41 MHQLGDVLIQYAIEQCAGLTPKEWRYHITTMGKVEIRSSCHIYVSLSYSYPYLVCIIDNQ PISIDIEEMKDLDYKYLAKNFTTNEFNQVTTLKDFYEIWTKKESYTKLIGEGLVNGLDRY DVTQNLRFLKKHVQFTSVDYFKRLIQICHMSKHSLNFEVVPLTQLL >gi|224999851|gb|ACJC01000149.1| GENE 65 75329 - 77512 2369 727 aa, chain + ## HITS:1 COG:SA2463_2 KEGG:ns NR:ns ## COG: SA2463_2 COG1075 # Protein_GI_number: 15928257 # Func_class: R General function prediction only # Function: Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 351 727 1 377 379 493 66.0 1e-139 MKNKKNSYSIRKLSVGASSIIVASMLFIGGGSVHAAESNHLENQEQSEVSASHSIELQHK DQEIQQPENKDNKNYHSETIDKNPTIHNNDYSYHETPSTDVKSNEGKQIDSQSNQPQTSM TKNDQQNPKKIGEHATNGINAKKEETRKNENAKSLVKPQQDDKTTSEQTKMKESREQEIT NEQKQLQSKDVKNAQQENQNIEQEKSQEKINLQQSSIEKVQKSSRIDGKLDHQYNKDATQ SNEDTVSENVSEQHITAKDEGVTRNNRGDERLNQEKSTTSDKELKVDDIDKDLSTKESPE NEKDDSRKGIKALTKNSQATTRNTATTEASKELKDQTNKVASQKEYKNQDPIILVHGFNG YASGTGPITGKGNYWGGDRLKIIQDYRAKGYNVMEASVSAFGSNYDRAVELYYYIKGGRV DYGAAHAAKYGHERYGKTYAGAYKDWKPGQKIHLIGHSMGGQTIRYLEELLRHGSPEEVE YQKQHGGDISPLYKGGQDNMISSITTIATPHNGTHAADLLGNEEIIRQVAYDYARSKGNK LSHVDVGLSQWGLKQREDETLVQYIQRVKQSKLWTTKDNGFYDLTTEGTDILNQKTSLNP NIVYKTYQGESTRPGPNGTQKADVNMNIGYTLTANTIGKVKDKAWRENDGLVSVISGQYP LNQAHTSATDQVQKGVWQVTPVKHNWDHGDFVGTDTSEVRISKEELEDFWDNMFEDMVRN EKVTDKQ >gi|224999851|gb|ACJC01000149.1| GENE 66 77735 - 79138 1853 467 aa, chain + ## HITS:1 COG:BS_yxcC KEGG:ns NR:ns ## COG: BS_yxcC COG0477 # Protein_GI_number: 16081032 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 20 458 1 441 461 434 53.0 1e-121 MLKRFHIGIIISLAIEKGMIRMKANKYLIFILGALGGLLYGYDNGVISGALLFIHKDIPL NSTTEGIVVSSMLIGAIVGAGSSGPLADKLGRRRLVMLIAIVFIIGALILAASTNLALLI IGRLIIGLAVGGSMSTVPVYLSEMAPTEYRGSLGSLNQLMITIGILAAYLVNYAFADIEG WRWMLGLAVVPSVILLVGIYFMPESPRWLLENRNEEAARQVMKITYDDSEIDKELKEMKE INAISESTWTVIKSPWLGRILIVGCIFAIFQQFIGINAVIFYSSSIFAKAGLGEAASILG SVGIGTINVLVTIVAIFVVDKIDRKKLLVGGNIGMIASLLIMAILIWTIGIASSAWIIIV CLSLFIVFFGISWGPVLWVMLPELFPMRARGAATGISALVLNIGTLIVSLFFPILSDALS TEWVFLIFAFIGVLAMIFVIKFLPETRGRSLEEIEYELRERTGARTE >gi|224999851|gb|ACJC01000149.1| GENE 67 79293 - 80996 1929 567 aa, chain + ## HITS:1 COG:VCA0786 KEGG:ns NR:ns ## COG: VCA0786 COG3044 # Protein_GI_number: 15601541 # Func_class: R General function prediction only # Function: Predicted ATPase of the ABC class # Organism: Vibrio cholerae # 11 564 8 548 549 404 42.0 1e-112 MKSAQALEQILTSLDGQKYGAYKQIKDLYEFNLFKLRIDHIQADPFAPPSKMSVVIDRQQ AKFPDSLLNSELKQRAVSDYLARVFHKQIQSIVAQDKKVSKIQIDSCGQEILERTAVVIK NHQIEARIEVGLPARGRTILGRIAKHTLINVLPQIVENALCYRNINGSQLQQQVELMMDQ EEIRQQLVKRDLVAFVANGAILPRKSGVSDLPMNNAIEFKSPKQYEIVMKLSNGKVIKGM GIPKGITLIVGGGYHGKSTLLEALERGVYNHIAGDGREYVITNQDAMKIRAEDGRSIQNV NIQPFIDHLPGEKDTTHFSTENASGSTSQAANVMEALESQASLLLIDEDTSATNFMIRDG RMQRLIAPEKEPITPFSNKVKALYDDHNVSTILIVGGSGDYFDVADQVLMMDEYVLKDVT QHAKDIAQSDGYQRKVSSHNQFGHIPSRIPLRASFNQKGKRDRFKAKGLNVVTYGKETIH ISGLEQLVDDSQTQGLAMMLSYVKNELLDDKSTIVELTNCLYQRIEKHGLDVISNHHGHP GHLALPRKQEFIATLNRYRRLKIKQRE >gi|224999851|gb|ACJC01000149.1| GENE 68 81091 - 81588 418 165 aa, chain + ## HITS:1 COG:SA0324 KEGG:ns NR:ns ## COG: SA0324 COG4815 # Protein_GI_number: 15926037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 23 150 21 148 152 117 45.0 7e-27 MKSSVRLLNHIIKIMNLQQSLIIRDEQWNQSYEAYNFNINGYVFKSRLAKKTTKKKGYFL SLWEKDKTKKNRAFDYESFPGKLIVHVIDDSQVGQFIFPKHVLFHKGILRHHESKGKMAF RVYPTWEKDLNRVAQKTQSWQKQYFIDMSQTIDVPSIKRAYFNED >gi|224999851|gb|ACJC01000149.1| GENE 69 81669 - 82625 754 318 aa, chain + ## HITS:1 COG:SA2487 KEGG:ns NR:ns ## COG: SA2487 COG2962 # Protein_GI_number: 15928281 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 22 318 4 300 302 425 83.0 1e-119 MSWNESHFLIAYIEGGLMVSSEYKKGIFLALGAYILWGILPIYWRLIDEIGAFEILAFRI IFSVIFMIFVLIIGKNQRNAFFRDVNQLVSHPVQLIAIIVAGYVITVNWGTFIWAVSNGH VLQSSLGYYINPLVSIVLALIFLKERFNKFEWLAIIFALVGVLYMTIKIGEFPFISLLLA FSFGIYGLLKKIVHIDAISSITIECIVTAPAGLIYVIYLWQQQHITFGLNISSFWLLFSG AITAIPLILFSAGAKRIPLSLTGFIQYVGPTIMFILGIFVFKEPFNTDQLITFIFIWIGI VLYSISQYVQIKKNPVVK >gi|224999851|gb|ACJC01000149.1| GENE 70 82733 - 83644 1073 303 aa, chain - ## HITS:1 COG:AGl3061 KEGG:ns NR:ns ## COG: AGl3061 COG0715 # Protein_GI_number: 15891646 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Agrobacterium tumefaciens strain C58 (Cereon) # 2 256 25 277 316 107 29.0 3e-23 MDKLTVGLEWFLNPDHMPLIIGIEKGWFKEESLEIEMIEPKEHFDALDEIENGSMDIAIT EPIHLVQDRAKEQNVIGFARYLHTNGGIMYNKDKNIARPKDLIGKRLQYPGAPGPGGIAM AKTMIEADGCTYKEGDITPVNHSFYHTDALLTDKADAATLIFENFEILEAKNQGLNVDYF PLKNYNVPDFCQLIFITTPEVLNTSEIKLRKFLKVIQKAIHYINHHLASAIEIYSMYTRT DISNQLNKDTIEATAKCFTNDLSMSSDYYNDLQLWLKEVNDIKDTINPTLYFTNQLLFSR YTK >gi|224999851|gb|ACJC01000149.1| GENE 71 83961 - 85379 1448 472 aa, chain - ## HITS:1 COG:SA2486 KEGG:ns NR:ns ## COG: SA2486 COG0471 # Protein_GI_number: 15928280 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 1 471 1 471 472 688 84.0 0 MGSTVKYRKFILPIVVGLIIWALTPIKPDALNDQAWYMFAIFVSTIIACITQPMTIGAVS IIGFTIMILVGIVDTKTAVQGFGNSSIWLIAMAFFISRGFVKTGLGRRIALQFVKLFGKK TLGLAYSLVGVDLILAPATPSNTARAGGIMFPIIKSLSESFGSSPKDGSERKMGAFLIFT EFQGNLITSAMFLTAMAGNPIAQSLAEKTAHVQMTWMNWFVAAIIPGLISLIVVPFIIYK LYPPTVKETPNAKKWATEQLEKMGHMSIAEKVMVGIFIIALALWVLGSFINVDATLTAFI ALALLLLTGVLAWSDILNETGAWNTLVWFSVLVLMAEQLNKLGFIPWLSKLIAQGLNGFS WPIVLVLLILFYFYSHYLFASATAHVSAMYAALLGVAVASGAPPLFSALMLGFFGNLLAS TTHYSSGPAPILYAAGYVTQKRWWTMNIVLGIVYFIIWIGVGSLWMKLIGMM >gi|224999851|gb|ACJC01000149.1| GENE 72 85705 - 87057 803 450 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 450 1 458 458 313 39 2e-84 MSKSYDLIVIGAGPGGYVAAIRGAQLGKNVAVIEKNNAGGTCLNVGCIPSKTLLEHGEKA HSIRVANDWGITTKDLKIDFTQFVQRKKKVVQTLTGGVKQLLKKNKVAYIEGEARISKNL KVDVNNETYQAKDIILATGSQPFIPPIDGLDQVNYETTDTFFDLEKLPKQLAVIGGGVIA TELASSMADLGVRVTIIEVADDILLTEINETREMLKAHLDNQGIKILTKAKIKQVKESKI ILDGQDDVSFDTLLVATGRQPNTQVAKDLNLEMDGKFFKVNEHYETSQKHIYAIGDLIKG YQLAHAASAHGIHVVETIMNKQPSLVRQEDITRCIYTRLEAASVGLSEAQAKEAGYDVKV TQSAFQGNAKALIKGENEGFIKLVVDKKYGEVLGAFIVGPHATDIIGELLSVKASEGTIH ELSQIIQPHPALLEAIGESADAFFDSAIHM >gi|224999851|gb|ACJC01000149.1| GENE 73 87099 - 88052 1310 317 aa, chain + ## HITS:1 COG:BH1822 KEGG:ns NR:ns ## COG: BH1822 COG1071 # Protein_GI_number: 15614385 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Bacillus halodurans # 3 316 11 327 337 355 58.0 7e-98 MKMEKEQARWIYKTMNEIRFFEEKVHKIFSDGRIPGFVHLYVGEEAVATGVMSQLSDDDY ITSTHRGHGHAIAKGCDLNGMMAEIMGKRDGLGHGKGGSMHVAEIDKGMLGANGIVSGGF GLAIGASISIINQGKDNVAVCFFGDGAANEGNFHEGLNFASILDLPVLFICENNQFAEGT THDYASASETIAERAAAYNMPGVRVDGMDVVEVYKATQEAVERAKKGEGPTLIECDTYRK YGHFEGDEQKVKSPDDRNADKNATVEFRKRAIEENWLTEKEADEIEKAAEQAVEDAVKFA EESELPDEDSLYKDVFA >gi|224999851|gb|ACJC01000149.1| GENE 74 88123 - 89163 1299 346 aa, chain + ## HITS:1 COG:BH1823 KEGG:ns NR:ns ## COG: BH1823 COG0022 # Protein_GI_number: 15614386 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Bacillus halodurans # 5 338 3 336 344 401 61.0 1e-111 MNEERKLTFMGAINEAIDQSMEKDEDVILIGTDVSGGAKVDHIKDDDTFGGVFGVTKGLA KKYSRKRVIDTPIAEHITLSTAVGAAATGLRPIAELMFNDFIGFGLDPILNQGAKMRYMF GGKAKIPLVVRTVHGAGASAAAQHSQSLYNMFAAIPGVKVVVPSNPYDAKGLLMSAIQED NLVVFSEDKTLLGQKGNVPEEPYTIEIGKANVTREGDDLTIVAIGKMVAVAEETAEKLAE DQVSVEVIDLRSVSPWDQETVLDSVKKTGRLIVIDESNPQCNIAGDVASVIGDVGFDYLD GPIKKVTAPDTPVPFAANLEAAYMPNADKVLNIASELIDDLKKANA >gi|224999851|gb|ACJC01000149.1| GENE 75 89177 - 90454 1716 425 aa, chain + ## HITS:1 COG:BH1824 KEGG:ns NR:ns ## COG: BH1824 COG0508 # Protein_GI_number: 15614387 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus halodurans # 1 425 1 410 410 279 42.0 9e-75 MSENIIMPKLGMTMKEGTVEEWFKSEGDTVKQGESIVTISSEKLTNDVEAPASGTLLEIK VQAGEDAEVKAVLGVIGEEGEAIDKDEDDLASEKVKEDNEHEKETQEVKDTSQQSSDNED NSPKSASRERIFISPLARNMAEDKGLDINKIKGTGGNHRITKLDIQRVEANGYDYASDTT SNEDTSRVPTQTVDTSAIGEGLNPMRQRIAQNMRQSLNNTAQLTLHRKVDADRLLDFKDR LATELKQADQDVKLTVTALLAKAVVLALKEYGAMNARYEQGELTEYEDVHLGIATSLDEG LMVPVINHADTKSIGTLAHEIKSSAEAIREGNTGAVQLEGATFTITNMGASGIEYFTPIL NLGETGILGVGALTKEVVLEADNIKQVSKIPLSLTFDHQILDGAGAADFLKVLAKYIENP YLLML >gi|224999851|gb|ACJC01000149.1| GENE 76 90657 - 91169 654 170 aa, chain + ## HITS:1 COG:no KEGG:SE0258 NR:ns ## KEGG: SE0258 # Name: not_defined # Def: immunodominant antigen B # Organism: S.epidermidis # Pathway: not_defined # 1 170 1 170 170 270 98.0 1e-71 MKGFAKAFVVSGITLGAILGLNVTEHNGVSNEAKAQTAHSYWYKYNGYTASGGDFVLSNS FYQGLKAGNVTFNGIKVNQKYESKTATKKIYDQTFQQINGNKANNVQFKIASRTVTLDQI KQKYGKNYNYQPPLSKNKTSKTDGLYGYQVGKGNIVFHVKDGYVTSATLS >gi|224999851|gb|ACJC01000149.1| GENE 77 91333 - 92943 1291 536 aa, chain - ## HITS:1 COG:BH3895 KEGG:ns NR:ns ## COG: BH3895 COG1292 # Protein_GI_number: 15616457 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Bacillus halodurans # 18 506 11 495 517 461 51.0 1e-129 MNKNIKMKNKRKINNTLVYTISVLIIVVITLIAGIFPKAFGMYAQSIYDWITNWFGWLFL IIVFVLDVFLIFLAFSRYGRFKLGSDEEEPEFSMLSWIGMLFSAGLGVGIVFWGVAEPLT HYLHSPFPGKIADHSEESARVAMGYTFFHWGISQWSIFAISGLIVAYFQFRKQRNGLIST AMEPVFGEAYKRPFRNIIDILAIIATVMGIATSIGLGIMQIGGGLNHLFDVPNNNSTKIL ITILMVAIFLGSSLTGLNHGVKWLSNFNIILGAVLLIFILVFGDLKFILESYTLAISDYL QHFIEYSLRVNPYSGDDSWIQQWTVFYWAWVISWSPFIGGFVARVSRGRTIREFVVGVLI IPPLISFTWIAGFGGTAIKLALNHNDKLVHIVDKDYTVALFELLSHFPLSEVTSSLAIVL IFIFIVTSADSTTHIVAGMATGGAINPSLKHKVLWGLLIGAISVAMTIAGGLKSLQTASV ITGLPFSIILLLMIFSLMRALKREPIHHFKMTSIDDEKDYSISLEEREKQDEQENQ >gi|224999851|gb|ACJC01000149.1| GENE 78 93106 - 93666 569 186 aa, chain + ## HITS:1 COG:no KEGG:SE0260 NR:ns ## KEGG: SE0260 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 186 5 190 190 354 97.0 7e-97 MYKYLKRNRFSTQTSIIKNDAQQPVGMISKVYKNFIQKCIGYLTLGLKLNQYEICDVNNN SVAYIKVSRYMEKKHFKVEYRDSKGRQCEALFDKQSNGYEETYGILKIDGIILNIHANEK HHTTIKDIKRDTQIASWKQIGDYAYAEGNDRVFKEHQLLYILIMHAFANTYVSKRQTSLM FPGPPV >gi|224999851|gb|ACJC01000149.1| GENE 79 93699 - 94337 605 212 aa, chain - ## HITS:1 COG:SA2482 KEGG:ns NR:ns ## COG: SA2482 COG2039 # Protein_GI_number: 15928276 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Staphylococcus aureus N315 # 1 212 1 212 212 255 62.0 3e-68 MEILVTAFEPFGDEKINSALEAVSHLETKIGCHKIDRLILPTVFHDSANVIAKVLKSKNY DVALAIGQAGGRSEITPERVGINIDDARIKDNQGHQPIDQVIRHDGAPAYFSNLPIKRMT MAIQKAGLPSRLSNSAGTFVCNHILYQLGYMADHFYPDLLFGFIHVPLIPEQTINHSQQP SLSVEDIVKGLTEAIKAIDFVEDNKIALGEIQ >gi|224999851|gb|ACJC01000149.1| GENE 80 94531 - 95493 1017 320 aa, chain - ## HITS:1 COG:SA2481 KEGG:ns NR:ns ## COG: SA2481 COG1054 # Protein_GI_number: 15928275 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 317 1 317 318 528 78.0 1e-150 MDYRVLLYYKYVTIDDPETFAAEHLKFCKEHHLKGRILVSTEGINGTLSGTKEDTDKYID HMHADSRFADLTFKIDEAESHAFKKMHVRPRREIVALDLEEDINPREITGKYYSPKEFKA ALEDENTVILDARNDYEYDLGHFRGAIRPDITRFRDLPEWVRNNKEQLDGKNIVTYCTGG IRCEKFSGWLVKEGFENVGQLHGGIATYGKDPETKGQYWDGKMYVFDERISVDVNQIDKT VIGKEHFDGTPCERYINCANPECNKQILVSEENEEKYLGACSYDCAKHERNRYVARHHIS NEEWQRRLNNFKDVPEHTHA >gi|224999851|gb|ACJC01000149.1| GENE 81 95776 - 96753 1125 325 aa, chain + ## HITS:1 COG:SA2480 KEGG:ns NR:ns ## COG: SA2480 COG3386 # Protein_GI_number: 15928274 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconolactonase # Organism: Staphylococcus aureus N315 # 1 325 2 324 324 575 83.0 1e-164 MANQKLPTLKYTGKSESAVPIVSESELQTVTAEPWVKISDKGLQLEGLNFNREGQLFLLD VFEGNIFKVNPATKEVTTEFQSVKDNPAAIKVHKDGRLFICYLGDFKTTGGIFATTENGE QIEEIISDLNTEYCIDDMVFDSKGGFYFTDFRGYSTQPLGGVYYVDPDFKKVTPIIQNIS VANGIALSTDEKVLWVTETTTNRLHRITLEDDGVTIAPFGATVPYYFTGHEGPDSCCIDS DDNLYVAMYGQGRVLVFNKRGYPIGQILMPGRDDGKMLRTTHPQFIPGTNQLIICTNDIE NHSEGGAMLYTVNGFAKGYESYQFQ >gi|224999851|gb|ACJC01000149.1| GENE 82 97016 - 97531 698 171 aa, chain - ## HITS:1 COG:SA2479 KEGG:ns NR:ns ## COG: SA2479 COG2353 # Protein_GI_number: 15928273 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 169 1 169 171 228 76.0 6e-60 MTKFNFDQVHSDIQFKIKHLMVSQVKGTFKQFDVQLDGDINDLTSLKATATIIPSSIDTQ NEDRDNHLRSNDFFGTEDNDKMTFVTKEINEDQVVGDLTIKGETHEETFDVEFNGVSKNP MNGQQVTGFIVSGTINREKYGINFNQALETGGVMLGKNVKFEASAEFSIEN >gi|224999851|gb|ACJC01000149.1| GENE 83 98754 - 100250 1646 498 aa, chain - ## HITS:1 COG:SA2400 KEGG:ns NR:ns ## COG: SA2400 COG0579 # Protein_GI_number: 15928193 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Staphylococcus aureus N315 # 1 497 1 498 498 863 83.0 0 MANKESKNVVIIGAGVLSTTFGSMIKELEPNWNIKLYERLDRPGIESSNERNNAGTGHAA LCELNYTVQQPDGSIDIEKAKEINEQFEISKQFWGHLVKSGNISNPRDFINPLPHISFVR GKNNVKFLKNRYEAMRNFPMFDNIEYTEDIEEMRKWMPLMMTGRTGNEIMAASKIDEGTD VNYGELTRKMAKSIEKHPNADVQYNHEVINFNRRKDGIWEVKVKNRNSGDVETVLADYVF IGAGGGAIPLLQKTGIPESKHLGGFPISGQFLICTNPDVINEHDVKVYGKEPPGTPPMTV PHLDTRYIDGERTLLFGPFANIGPKFLRNGSNLDLFKSVKPYNITTLLASAVKNLPLIKY SIDQVLMTKEGCMNHLRTFYPEARDEDWQLYTAGKRVQVIKDTKEHGKGFIQFGTEVVNS KDHSVIALLGESPGASTSVSVALEVLEKNFAEYEKDWTPKLQKMIPSYGKSLIDDVKLMR ATRKQTSKDLELNYYESK >gi|224999851|gb|ACJC01000149.1| GENE 84 100601 - 101119 338 172 aa, chain + ## HITS:1 COG:SA2474 KEGG:ns NR:ns ## COG: SA2474 COG1670 # Protein_GI_number: 15928268 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Acetyltransferases, including N-acetylases of ribosomal proteins # Organism: Staphylococcus aureus N315 # 1 164 1 164 165 142 42.0 2e-34 MLKTHRLKLVKPNLSYTDELYQLHTNKVATKYTPKGIHQNKVATRDFIKGWMRHWDEYQF GYFILMMRDNQKVVGIAGFEYRTIHQQQFLNAYYRIFPSYTGVGLAFESMEEIARHLEKH DTITPKIIRTNQYNTNSIKLAQRLGYNYDANWDDVINKGDRCFFNVQALDNN >gi|224999851|gb|ACJC01000149.1| GENE 85 101270 - 101677 505 135 aa, chain - ## HITS:1 COG:no KEGG:SE0268 NR:ns ## KEGG: SE0268 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 135 1 135 135 173 97.0 1e-42 MKLSIFHDGQFFVGVVEYQEGCIHKYLKVTFGNEPSDETVLRLITFKLIPLLNQTQGKKK PIQKHKKINPKRLQRKIAKEQKETNLTTFAQQAIKEEQELNKLKSKKLQRLEKERHRQYK RMLKRKKAHEKHKGH >gi|224999851|gb|ACJC01000149.1| GENE 86 101840 - 102250 219 136 aa, chain - ## HITS:1 COG:BS_lrpC KEGG:ns NR:ns ## COG: BS_lrpC COG1522 # Protein_GI_number: 16077492 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Bacillus subtilis # 1 134 3 136 144 109 38.0 2e-24 MDLTNQKILHLLEQNSKLSLSEIGKEVNLSTPSVRERIYKLIDSKIIERYTIDINYDALG FDINVLIEVTIKNNLYKDFKAFISVQNNVDFCYRISGDSCFIFKAHFKKMSEVETLINEI QYYGHTKTHFIFSETK >gi|224999851|gb|ACJC01000149.1| GENE 87 102353 - 102769 412 138 aa, chain + ## HITS:1 COG:BH0424 KEGG:ns NR:ns ## COG: BH0424 COG2128 # Protein_GI_number: 15612987 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 135 1 135 138 127 43.0 4e-30 MAIINLSHRGDTSFDKLLGHLPSVQEKWNALEDILKNEGQLSVDLKEKIRKILAQNSGCL YCKSKGKPNKKFTDEKSLVCIGFVDVYVSQKGQVPQSTIQVLTKTLTDLEIVELLAFVSF THCQQEFGAMMNLQPSNN >gi|224999851|gb|ACJC01000149.1| GENE 88 103147 - 103818 650 223 aa, chain + ## HITS:1 COG:no KEGG:SE0270 NR:ns ## KEGG: SE0270 # Name: hisZ # Def: ATP phosphoribosyltransferase regulatory subunit # Organism: S.epidermidis # Pathway: not_defined # 1 223 48 270 270 422 96.0 1e-117 MDERSFWQQNKSIYALRNDFTDQLFRYYSNYPTHFKKVAYAGDIIRDNRVIKQVGIENYE PQFDKITQNFLDFQYFIQNVLHDDIQFVILGHYQLIDALLEKNNQTREVMEMIEERNLSG LIQTLTFNHPIIQILKENTLNQLKILSHYLPEQHPAMGSIQSWAQWFTDHGITEIHLDVT AQAPRSYYKGIFIKCHLKNTTHSVLTGGYYHGSLEGFGLGLTL >gi|224999851|gb|ACJC01000149.1| GENE 89 103843 - 104457 666 204 aa, chain + ## HITS:1 COG:SA2471 KEGG:ns NR:ns ## COG: SA2471 COG0040 # Protein_GI_number: 15928265 # Func_class: E Amino acid transport and metabolism # Function: ATP phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 204 1 204 204 270 67.0 1e-72 MLRVALAKGRLLESFIEYLQQVNQIDIATVLLNRQRQLLLTVDNIEMILVKGSDVPTYVE QGIADVGIVGSDILNGQKYNINKLLDLPFGKCHFALAAKPETSCYKKVATSYVHTATQFF NKEGMDVEVIHLNGSVELSCVVDMVDAIVDIVQTGSTLTANGLVEKNYISEINAKLITNK ESYFKQSSEIERLIKQLGVSISYA >gi|224999851|gb|ACJC01000149.1| GENE 90 104450 - 105700 1302 416 aa, chain + ## HITS:1 COG:SA2470 KEGG:ns NR:ns ## COG: SA2470 COG0141 # Protein_GI_number: 15928264 # Func_class: E Amino acid transport and metabolism # Function: Histidinol dehydrogenase # Organism: Staphylococcus aureus N315 # 1 414 1 415 416 567 70.0 1e-161 MLSAQQFLKEFNNVESLDESLYEIVSQICEEVKLQGDKALKNYNLQFDQVETENLELEQS LLKNAYDMLDNKTRDALEQSYQRIKVYQENIKVKQESSQQTECYERYHPIERVGIYVPGG KASYPSTVLMTATLAQVAGVNEITVVTPPQNNGICQEVLAACYITGVHHVYQVGGAQSIA ALTYGTETIKKVDKIVGPGNQYVAYAKKFVFGQVGIDQIAGPTEIALIIDESADLDAIAY DVFAQAEHDEMACTYVISENEKVLNQLNTIIQEKLQYVERQDIISQSITNHHYLILAQDT EEACLIMNTIAPEHASIQTRAPEMYINKVKYVGALFLGHFSPEVIGDYVAGPSHVLPTNQ TARFTNGLSVNDFMTRHSVIHLSQKTFNEVAESAEHIAHIESLFNHEKSINVRRKG >gi|224999851|gb|ACJC01000149.1| GENE 91 105810 - 106388 506 192 aa, chain + ## HITS:1 COG:SA2468 KEGG:ns NR:ns ## COG: SA2468 COG0131 # Protein_GI_number: 15928262 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate dehydratase # Organism: Staphylococcus aureus N315 # 1 192 1 192 192 290 75.0 2e-78 MNYQIKRNTEETQLNISLANNGTQSHINTGVGFLDHMLTLFTFHSGLTLSIEATGDTYVD DHHITEDIGIVIGQLLLELVKTQQSFTRYGCSYVPMDEALARTVVDISGRPYFSFNSKLS AQKVGTFDTELVEEFFRALVINARLTVHIDLLRGGNTHHEIEAIFKSFARALKISLAQNE DGRIPSSKGVIE >gi|224999851|gb|ACJC01000149.1| GENE 92 106385 - 106963 587 192 aa, chain + ## HITS:1 COG:SA2467 KEGG:ns NR:ns ## COG: SA2467 COG0118 # Protein_GI_number: 15928261 # Func_class: E Amino acid transport and metabolism # Function: Glutamine amidotransferase # Organism: Staphylococcus aureus N315 # 1 192 1 192 192 259 63.0 2e-69 MIAIIDYGLGNISNITRAIQHLGYDVILTCDDKDVQKAEAIVLPGVGHFRDAMHSIEEKG IKDMLKNIHDKPIIGICLGMQLLFQHSAEGDISGLELVPGNIVPIQSSHPIPHLGWNELK STHPLLQSDVYFVHSYQAEMSEYVVAYADYGTKIPGVIQYRNYIGIQFHPEKSGTYGLEI LNQTLKGGFIND >gi|224999851|gb|ACJC01000149.1| GENE 93 106956 - 107660 659 234 aa, chain + ## HITS:1 COG:SA2466 KEGG:ns NR:ns ## COG: SA2466 COG0106 # Protein_GI_number: 15928260 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase # Organism: Staphylococcus aureus N315 # 1 233 1 233 234 360 71.0 1e-99 MIDLWPAIDLINSTSVRLTEGKYDSKEKMEKSVEDSIRFYSQFKCVKRIHIVDLIGAKAK EVKEFDYIRSLRKLTTKPIEVGGGIRSKQTIENYIYSGIDYCIVGTKGIQDIEWLTHMTH QFPNKLYLSVDAFGEKIKINGWEEDAKLNLFDYVDQIEHLPLGGVIYTDISKDGKLSGPN FDLTGRLALYTSLPVIASGGIRHQEDLFRLESLNVHAAIVGKAAHLDEFWEGLS >gi|224999851|gb|ACJC01000149.1| GENE 94 107657 - 108415 711 252 aa, chain + ## HITS:1 COG:SA2465 KEGG:ns NR:ns ## COG: SA2465 COG0107 # Protein_GI_number: 15928259 # Func_class: E Amino acid transport and metabolism # Function: Imidazoleglycerol-phosphate synthase # Organism: Staphylococcus aureus N315 # 1 252 1 252 252 430 82.0 1e-120 MIKKRVIPCLDVKDGRVVKGIQFQSLRDIGNPVDLALFYNEAGADELVFLDISKTEAGHD LMIEVIEATAKQLFIPLTVGGGIQNLDDITQLLNHGADKVSLNSSALKHPELIRQASEKF GRQCICIAIDSFYDKDRKDYFCTTHGGKKLTDVRVYDWVQEVEHLGAGELLITSIHHDGM KQGFDIEHLAKIKQLVNIPIIASGGGGNAQHFVELFQHTDVSAGLAASILHDQETTVAEI KDKMREGGILVR >gi|224999851|gb|ACJC01000149.1| GENE 95 108412 - 109047 622 211 aa, chain + ## HITS:1 COG:SA2464_1 KEGG:ns NR:ns ## COG: SA2464_1 COG0139 # Protein_GI_number: 15928258 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosyl-AMP cyclohydrolase # Organism: Staphylococcus aureus N315 # 5 109 6 108 109 157 70.0 1e-38 MNKPIDFSKGLVPVILQHAQTDSVLMLGYMNEEAYQKTLKEKKVTFFSRSKQRLWTKGET SGHFQHVESIHIDCDQDTILIKVMPQGPTCHTGSLSCFNTEIASRFKIQALAQTIHQSAK ANQSNSYTQYLLKEGIEKISKKFGEEAFEVVIGAIKHNREEVINETADVMYHLFVLLHSL DIPFSEVEQVLAHRHQKRNNFKGERKEVREW >gi|224999851|gb|ACJC01000149.1| GENE 96 109156 - 109941 637 261 aa, chain - ## HITS:1 COG:SA2490 KEGG:ns NR:ns ## COG: SA2490 COG2162 # Protein_GI_number: 15928284 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Staphylococcus aureus N315 # 1 256 3 260 266 274 54.0 1e-73 MDIQKFESYLKIKHSYYSNPSVEALNYYVKRFMITVPFENINVQNKIPISVDINDLYNKI VIQRRGGFCYELNHLFATYLEHKGFHVTRAAATVRTPNGGRSPEGSHMSLYVNIEGTLYI TDVGFGDLPTSIIEIGSKTQFIPTYDKNGVYRAVWINDNQYALQKLRQNKWMTLYEAHLK SQSIKDFEDKISYNEHHPHSIFVRHLLITQPQSFGRATMTYHSLTLSNDSTKHKYDVTTN NYKYFLKKYFNLNVSIIPFEP >gi|224999851|gb|ACJC01000149.1| GENE 97 110347 - 112413 2457 688 aa, chain + ## HITS:1 COG:SA2463_2 KEGG:ns NR:ns ## COG: SA2463_2 COG1075 # Protein_GI_number: 15928257 # Func_class: R General function prediction only # Function: Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 312 688 1 378 379 627 84.0 1e-179 MKTRQNKYSIRKFSVGASSILIAALLFMGGGSAQAAEQQQDKGTVENSTTQSIGDKNEKL SEQQSTQNKNVNEKSNVNSITENENLHNETPKNEDLIQQQKDSQNDNKSESVVEQNKKNE AFVQNHSEEKPQQEQVELEKHASENNQTLHSNAAQSNEDVKTKPSQLDNTTAQQEDSQKE NLSKQDTQSSKNTDLLRTTGQNQSKDSQSTEEVNKEVNNDTQQVTAKKDDDKVETFNLNS KEEPLKVDKQANPTTDKDKSSKNDKGSQDGLANLESNAVATTNKHSKQQVSEKNEDQTNK SAKQKQYKNNDPIILVHGFNGFTDDINPSVLTHYWGGDKMNIRQDLEENGYEAYEASISA FGSNYDRAVELYYYIKGGRVDYGAAHAAKYGHERYGKTYEGVYKDWKPGQKIHLVGHSMG GQTIRQLEELLRHGNPEEVEYQKQHGGEISPLFQGGHDNMVSSITTLGTPHNGTHASDLL GNEAIVRQLVYDVGKMYGNKDTRVDFGLEHWGLKQKPNESYIQYVKRVQNSKLWKSEDSG LHDLTRDGATDLNRKTSLNPNIVYKTYTGESTHKTLAGKQKADLNMFLPFTITGNLIGKA KEKEWRENDGLVSVISSQHPFNQKYVEATDKNQKGVWQVTPTKHDWDHVDFVGQDSTDTK RTRDELQQFWHGLADDLVQSEQLTSTNK >gi|224999851|gb|ACJC01000149.1| GENE 98 113011 - 113205 69 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243511|ref|ZP_04797956.1| ## NR: gi|242243511|ref|ZP_04797956.1| hypothetical protein HMPREF0791_2037 [Staphylococcus epidermidis W23144] # 1 64 1 64 64 87 100.0 3e-16 MNLKIFTVELFKKSFNYNQTGKRKRIIRGFVKKSTLFHEYSILFIKIKSIQSDIFKRMLY IKSS >gi|224999851|gb|ACJC01000149.1| GENE 99 113366 - 114541 1282 391 aa, chain + ## HITS:1 COG:BS_yfhI KEGG:ns NR:ns ## COG: BS_yfhI COG2814 # Protein_GI_number: 16077921 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Bacillus subtilis # 5 385 9 389 397 251 42.0 1e-66 MKDNKMLFIIFMIGTFTVGMAEYVVTGLLTQIADDMKVSVSSAGLLISVYAISVALIGPL MRIITLKVHAHRLLPILVAIFIISNIVGMLAPNFNVLLLSRLMSAAMHAPFFGVCMSVAA TVAPPAKKTQAIALVQAGLTIAVMLGVPFGSFLGGFANWRVVFGFMIVLAIITMLGMIKF VPNVSLSAEANISKELTVFKNPHILIVIAIIVFGYSGVFTTYTFMEPMIRDFSPFKIVGL TVCLFMFGLGGVIGNLITGNVPENKLTKNLYLTFLLLFLTIVLFVTVIQNSILALIICFL FGFGTFGTTPLLNSKIILSAKEAPLLASTLAASIFNVANFLGAIIGSILLSVGLPYIQIT MISGGIIVLGMLLNLVNQLYEKKHVTFNEYS >gi|224999851|gb|ACJC01000149.1| GENE 100 114641 - 116176 1631 511 aa, chain - ## HITS:1 COG:SA0140 KEGG:ns NR:ns ## COG: SA0140 COG0737 # Protein_GI_number: 15925849 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 1 511 1 511 511 681 62.0 0 MSQIAFYILSDVHGFIFPTDFSSRGKDLPMGLLKANHLIEQDCVHYDDSVKIDNGDFLQG SPLCNYLVSKLKSSLPLTSIYNRLGFDFGTVGNHEFNYGLPYLKQAINQLHYPVLCANII ENTQPFTGQGIHYFKVNGLTIGTIGLTTQYIPHWEQPEYIKTLTFNSAVQTLKSELPTLR EKSDIVVVSYHGGFERDLDSGIPTEALTGENEGYDILSQFSDNIDVLITGHQHRDIATIK NQTAIIQPGSKGTKVGKIVIEYTHDKKVLIKECNLMNVHNNTSFKPNDEDIVLRNQLEDW LDTQIAELPYAMRINNSFEARKSPHAFVNLLNYILLEKSGADIACTALFDSANGFDEKVT MRDIINNYPFPNTFKVIELSGKDIKLAIERSASYFDIVNHKITVNKEFLEPKPQHFNYDI FAGIQYTIHVGHPYGERVSDLQINDAPLQSDQIYTICVNNYRAVGGGNYDMYVNKPVIKD IQIEGAQLLIDYLSHNDLSQIPQVIDFNVVK >gi|224999851|gb|ACJC01000149.1| GENE 101 116273 - 117823 1676 516 aa, chain - ## HITS:1 COG:no KEGG:SERP2287 NR:ns ## KEGG: SERP2287 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 516 1 516 516 919 96.0 0 MKIFKTLSSILVTSVLSVTVIPSTFASTESTATNQTQQTVLFDNSHAQTAGAADWVIDGA FSDYADSMRKQGYQVKELEGESNISDQSLQQAHVLVIPEANNPFKENEQKAIINFVKNGG SVIFISDHYNADRNLNRIDSSESMNGYRRGAYQNMTKDMNNEEKNSNVMHNVKSSDWLSQ NFGVRFRYNALGDINTQNIVSNKDSFGITKGVHSVSMHSGSTLAITNPNKAKGIIYMPEH LTHSQKWSHAVDQGIYNGGGINEGPYVAISKIGKGKAAFIGDSSLVEDRSPKYLREDNGK PKKTYDGFKEQDNGKLLNNLTTWLGKKESQSSMKDMGIKLDHKTPLLNFEQPENSIEPQK EPWTNPIEGYKWYDRSTFKKGSYGSDQQGADDGVDDKSSSHQKQNGKVELTLPQNIQPHH PFQFTIKLTGYEPNSTINDVRVGLYKDGGKQIGSFSSNHNQFNTPGYSPSQSIKTNGAGE ASITLTARVTDEIKDANIRVKQGKKILLTQKMNENF >gi|224999851|gb|ACJC01000149.1| GENE 102 118058 - 119014 1206 318 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 318 1 318 318 462 83.0 1e-130 MKNLKFLVVLVLSVVIFAAACGNSSSLNNNKSSDSGSDSKSGSYTPKELTVQFVPSQNAD TLEAKAKPLEKLLSDKLGIPVKVSVSTNYNTIVEAMKSKKVDVGFLPPTAYTLAHDQKAA DLLLKAERYDVNEDGSPSKKLVDDYKSEILVKKDSGINSLKDLKGKKIALQDVTSTAGYT FPLVTLKKEAGIDATKDMKIVNVKGHDQAVISLLNGDVDAAAVFNDARTVVKKDQPNVFK DTKILKLTKPIPNDTISVRPDMDKKFQDKLKKAFKEISKTKKGHKIISEVYSHEGYVDTK DSDFDIVRQYEKAVHDMK >gi|224999851|gb|ACJC01000149.1| GENE 103 119125 - 119901 271 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 258 1 245 305 108 27 9e-23 MMSQIEFKDVSKVYPNGHVGLKDINLNIEKGDFAVIVGLSGAGKSTLLRSVNRLHDISKG EITIEGQSITKARGKKLLEMRRSIGMIFQHFNLVKRSTVLRNVLSGRVGYHPTWKMILGL FPKEDKVKAMNALERVNILDKYDQRSDQLSGGQQQRISIARALCQEPTIILADEPVASLD PLTTKQVMDDLKKINEELGITILINLHFVDLAKEYGSRIIGLRAGELVYDGPASEANDEV FNHIYGRSIKDDEKLGVE >gi|224999851|gb|ACJC01000149.1| GENE 104 119951 - 120703 830 250 aa, chain + ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 250 17 266 266 363 84.0 1e-100 MSLKTSFSIILITGLIIWSFIYTGFSIGDLMIGLPQIGVFFKQMIPPDWGYLDHITQPML DTIRMAIVGTFLGSIVSIPIALLCASNIVQTKWIAIPSRFVLNIVRTIPDLLLAAVFVAI FGIGQIPGVLALFVLTICIIGKLLYESLETIDPGPMEGMTAVGANKVKWIAFGVVPQALS SFMSYVLFAFEINIRASAVLGLVGAGGIGLFYDQTLGLFQYKKTAMIILFTLIIVVIIDY VSSKVRERLA >gi|224999851|gb|ACJC01000149.1| GENE 105 120700 - 121515 730 271 aa, chain + ## HITS:1 COG:SA0135 KEGG:ns NR:ns ## COG: SA0135 COG3639 # Protein_GI_number: 15925844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 6 271 6 271 271 371 83.0 1e-103 MNTLDSKYELKSKKHRQRIIKNWIIVIVVAAIIIWAFAGIPGLELKSKSIEILKSIFYGL FHPDLSYIYIPDGEDLLRGLLETFAIAVIGTFIASIICIPFAFLGAKNMMKLRPVTGISK FILSIIRVFPEIVTALIFIKAVGPGSFSGVLALGIHSVGMLGKLFVEDIESLDFSAVESL KASGANKMKTLMFAVIPQILPSFISLILYRFELNLRSASILGLIGAGGIGTPLIFALQTR SWDRVGMILIGLIAMVALVDLISGAVRKRIV >gi|224999851|gb|ACJC01000149.1| GENE 106 121791 - 123092 604 433 aa, chain + ## HITS:1 COG:no KEGG:SE2252 NR:ns ## KEGG: SE2252 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 433 1 433 433 602 96.0 1e-170 MKQFLNITQRKFIEWLIILSIFMVSIPNKWTLMISIALSLLLLKRGALGVVQLIILYMLR SQIYTPFDTLEMTHYIVSMKYILTYVIGVFFLFKYVKSWIRNEMILRFIKSTMILMLLYI IMSLVVSNDPIESILKLLNFFIPLILIVMYVSLIKKIKNLINWINQFITLMIAFTFLLIV IAPKSYLIDGESLRSVFKDEHSFAIILAMGLVLYMVTKIKQQDYDVFNLLLLNIGMIELY LSNSRHIFISVILCLMLLLPLSHMKKRIKHPIIGAMILMTIAIINQPYIYHLFIKLILKG KNSQEVFMPSDMNIKAIDYALTEHPFLGSGFGIPMIKASSEIQYFNVETSNIIFGMIIFT GIIGLTLCTIYMLHMVLLVTFPMSITILLFLITIFVNMNHIILFDSMGLGILCYIFWGIY LKEGMYQYNNGQW Prediction of potential genes in microbial genomes Time: Sun May 29 08:03:40 2011 Seq name: gi|224999850|gb|ACJC01000150.1| Staphylococcus epidermidis W23144 contig00194, whole genome shotgun sequence Length of sequence - 42823 bp Number of predicted genes - 34, with homology - 34 Number of transcription units - 24, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 2/0.250 + CDS 9 - 1280 1394 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 2 1 Op 2 4/0.000 + CDS 1298 - 2806 1088 ## COG0438 Glycosyltransferase 3 1 Op 3 . + CDS 2799 - 4139 1167 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases + Prom 4160 - 4219 3.5 4 2 Tu 1 . + CDS 4245 - 4592 263 ## SE2241 hypothetical protein + Term 4631 - 4674 5.2 + Prom 4668 - 4727 4.6 5 3 Tu 1 . + CDS 4761 - 5240 290 ## COG0225 Peptide methionine sulfoxide reductase + Term 5245 - 5288 -0.6 - Term 5297 - 5348 3.1 6 4 Tu 1 . - CDS 5387 - 5743 575 ## SE2239 hypothetical protein - Prom 5815 - 5874 8.4 + Prom 5932 - 5991 8.2 7 5 Op 1 4/0.000 + CDS 6084 - 7256 1239 ## COG0477 Permeases of the major facilitator superfamily + Prom 7326 - 7385 4.0 8 5 Op 2 . + CDS 7418 - 8107 810 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family + Term 8236 - 8273 7.1 - Term 8222 - 8259 7.1 9 6 Tu 1 . - CDS 8339 - 8515 165 ## SERP2267 hypothetical protein - Prom 8581 - 8640 8.2 - Term 8726 - 8776 11.0 10 7 Tu 1 . - CDS 8829 - 9257 485 ## COG1764 Predicted redox protein, regulator of disulfide bond formation - Prom 9287 - 9346 7.2 + Prom 9246 - 9305 11.5 11 8 Tu 1 . + CDS 9507 - 11537 2443 ## SERP2264 cell wall surface anchor family protein + Term 11608 - 11643 -0.8 - Term 11813 - 11863 10.6 12 9 Tu 1 . - CDS 11906 - 13873 1844 ## COG1705 Muramidase (flagellum-specific) - Prom 13995 - 14054 8.0 + Prom 13887 - 13946 9.4 13 10 Tu 1 . + CDS 14162 - 17020 2935 ## COG1511 Predicted membrane protein + Term 17119 - 17177 15.1 - Term 17113 - 17158 7.2 14 11 Op 1 . - CDS 17331 - 18017 639 ## COG1482 Phosphomannose isomerase 15 11 Op 2 4/0.000 - CDS 18099 - 18281 213 ## COG1482 Phosphomannose isomerase 16 11 Op 3 2/0.250 - CDS 18297 - 20237 2329 ## COG1299 Phosphotransferase system, fructose-specific IIC component - Prom 20259 - 20318 6.1 17 12 Op 1 . - CDS 20322 - 21908 1162 ## COG3711 Transcriptional antiterminator 18 12 Op 2 . - CDS 21981 - 22193 115 ## COG3711 Transcriptional antiterminator - Prom 22340 - 22399 7.1 - Term 22415 - 22471 17.7 19 13 Tu 1 . - CDS 22512 - 22709 238 ## SE2226 hypothetical protein - Prom 22756 - 22815 8.8 + Prom 22758 - 22817 7.8 20 14 Tu 1 . + CDS 22948 - 23727 203 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 23759 - 23815 16.7 - Term 24114 - 24172 15.1 21 15 Op 1 . - CDS 24173 - 26338 2143 ## SaurJH9_1546 hypothetical protein 22 15 Op 2 . - CDS 26319 - 27233 717 ## SERP2255 hypothetical protein - Prom 27343 - 27402 12.4 - Term 27379 - 27423 4.2 23 16 Tu 1 . - CDS 27436 - 27939 330 ## SE2221 hypothetical protein - Prom 28168 - 28227 8.0 24 17 Tu 1 . + CDS 28245 - 29489 1399 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 29506 - 29558 10.3 + Prom 29689 - 29748 16.1 25 18 Tu 1 . + CDS 29921 - 31444 1998 ## COG3227 Zinc metalloprotease (elastase) + Term 31594 - 31632 4.1 + Prom 31847 - 31906 14.1 26 19 Tu 1 . + CDS 31966 - 32427 432 ## COG1438 Arginine repressor + Term 32459 - 32499 5.5 + Prom 32469 - 32528 7.1 27 20 Op 1 7/0.000 + CDS 32765 - 34000 1072 ## PROTEIN SUPPORTED gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 + Term 34058 - 34091 -0.1 + Prom 34017 - 34076 2.6 28 20 Op 2 3/0.000 + CDS 34105 - 35112 1162 ## COG0078 Ornithine carbamoyltransferase + Prom 35156 - 35215 9.9 29 20 Op 3 1/0.750 + CDS 35372 - 36775 1418 ## COG0531 Amino acid transporters + Prom 36848 - 36907 7.2 30 21 Tu 1 . + CDS 37020 - 37706 631 ## COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases + Term 37733 - 37800 14.0 + Prom 37769 - 37828 10.0 31 22 Op 1 . + CDS 37999 - 38757 773 ## COG0627 Predicted esterase + Prom 38896 - 38955 7.7 32 22 Op 2 . + CDS 39010 - 40176 1269 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) + Term 40183 - 40233 12.1 - Term 40440 - 40492 7.9 33 23 Tu 1 . - CDS 40523 - 42172 1871 ## COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes - Prom 42205 - 42264 7.2 + Prom 42161 - 42220 7.0 34 24 Tu 1 . + CDS 42342 - 42788 523 ## COG1846 Transcriptional regulators Predicted protein(s) >gi|224999850|gb|ACJC01000150.1| GENE 1 9 - 1280 1394 423 aa, chain + ## HITS:1 COG:SA2442 KEGG:ns NR:ns ## COG: SA2442 COG0653 # Protein_GI_number: 15928235 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Staphylococcus aureus N315 # 1 423 374 796 796 505 61.0 1e-143 MTGTGKLGEKEFFDLYSKVVIEIPTHSPIERDDRPDRVFANGDKKNDAILKTVIDIHESQ QPVLLITRTAEAAEYFSAELFKRDIPNNLLIAQNVAKEAQMIAEAGQLSAVTVATSMAGR GTDIKLSKEVHDIGGLAVIINEHMDNSRVDRQLRGRSGRQGDPGYSQIFVSLDDDLVKRW SNSNLAENKNLQTMDASKLESSALFKKRVKSIVNKAQRVSEETAMKNREMANEFEKSISV QRDKIYAERNHILEASDFDDFNFEQLARDVFTKDVKNLGLSSERALVNYIYENLSFIFDE DVSNINMQNDEEIIQFLIQQFTQQFNNRLEIATDSYLKLRFIQKSILKAIDSEWIEQVDN LQQLKASVNNRQNGQRNVIFEYHKVALETYEYMSEDIKRKMVRNLCLSILTFDKDGDMVI HFP >gi|224999850|gb|ACJC01000150.1| GENE 2 1298 - 2806 1088 502 aa, chain + ## HITS:1 COG:SA2441 KEGG:ns NR:ns ## COG: SA2441 COG0438 # Protein_GI_number: 15928234 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 1 502 1 502 502 670 64.0 0 MTIYNINFGIGWASSGVEYAQVYRAKLLRQLPYPTKFIFLDFIQSENIQTLTSNIGFKDD EVIWLYQYFTDVKIAPTTYTVDDLISELGNEVTRKEQNGKVLRLYLNNQQTFVTCYLKNA NEHYVDRAEFVVNGMLIRKDFYSYVRTFSEYYAPFDNKAKIYMRQFYNEDGSIAYREYID EDEHVFVFDDARLYSKQALVAYFIRQLRLDSDDIIIIDRATDVGQAILENKGSSKVGVVV HAEHFSEGATDGTHILWNNYYEYQFENAQYIDFFITATDLQRHTLSEQFKQYKNDCPRIR TIPVGSIESLQYPEKERKPYSIITASRLATEKHVDWIVEAVIKAKHQLPQLSFDIYGQGE EQEKIKNIIIKHRAEDYIQIKGHRNLRTIYQQYELFIAASQSEGFGLTLMEAVGSGLGMI GFDVNYGSPTFIRHHQNGYLISIDFEQASTDDITTQIAHMIIRYFKDGPIRAHEVSYNIA ESFKTSHIVDLWRQLIEEVLYD >gi|224999850|gb|ACJC01000150.1| GENE 3 2799 - 4139 1167 446 aa, chain + ## HITS:1 COG:SP1765 KEGG:ns NR:ns ## COG: SP1765 COG1442 # Protein_GI_number: 15901596 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 279 369 264 354 398 63 38.0 7e-10 MINLFENYNQETQELHHSLKHAGYNHFTIVINDDGFLPDDVTSPYRFFAAYQIYEDDTPA FFNDIDTPPFWEIKGDATMATITDMGELRGKIFYKEHYKTRVVSHVEWLDSKQRLRSVDY YTKEGFKFAETVYDLLGNAILKKYMTREGKEVIYENYVTNDVVVEYEGKSYFFESYTEWI KFYLSEMGVEIKEVIFNTLSTPFLAIYHLPTLKKGILFWQEQSHGYIPGNMKVMLSQNLQ SRFAVIVPNQNEYKLIKEQLSREEQQKVYASGYLYDMYKRNQYSKNVLTLTNSDQIPHVE TLIRLHKDYQFHIGAKTEMSSKLLSLSQYENVKLYPIIKDQTVQTLYQQCDIYLDINEGN EIGNAVRSAYNHQLLIMGYKEVVHNQDFVAIENQFLVNDISQLSNALKEIGNHRGQFETR LALQQRHANAVPVSTFKYALVQALSG >gi|224999850|gb|ACJC01000150.1| GENE 4 4245 - 4592 263 115 aa, chain + ## HITS:1 COG:no KEGG:SE2241 NR:ns ## KEGG: SE2241 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 114 5 118 119 180 97.0 1e-44 MENFDKSYHDKTDDMLGALSYLSVFFAPVLFPLIVWIVGQPPASTYSRNALFNHILSWVC LALGLISFAAGLSLIDSTNGVAVLVIGVIIGGILLIASLVLFIINIVKGIKLLMP >gi|224999850|gb|ACJC01000150.1| GENE 5 4761 - 5240 290 159 aa, chain + ## HITS:1 COG:SA2453 KEGG:ns NR:ns ## COG: SA2453 COG0225 # Protein_GI_number: 15928246 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 225 65.0 3e-59 METVYFAGGCLWGTQAFFNTIPGVIQTEAGRANGTSKCLDAPYDGYAECVKIHFDPAKTS IHMLLDYLFEMINPYSLNQQGQDKGQKYRTGVYSESSKHLNEAKDYIKRREDAKQVMVEV QPLSNYVKSAEEHQNHLEKFPEDYYLCHVPPALLNKYKK >gi|224999850|gb|ACJC01000150.1| GENE 6 5387 - 5743 575 118 aa, chain - ## HITS:1 COG:no KEGG:SE2239 NR:ns ## KEGG: SE2239 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 118 1 118 118 177 97.0 1e-43 MILRYATNLKLAKELYDASKPKLKGDQGMIDTFTNTFGLPENSVKLAGGVEAAAAGLFAA SFLNKNISRLGSLAAISVLGVAAYKHFEAGHGKKGAQHALDLLGLSTLSLLDTFSCKK >gi|224999850|gb|ACJC01000150.1| GENE 7 6084 - 7256 1239 390 aa, chain + ## HITS:1 COG:CAC3506 KEGG:ns NR:ns ## COG: CAC3506 COG0477 # Protein_GI_number: 15896743 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 3 384 10 388 392 152 28.0 7e-37 MEESKNYNLITTIMFISGIIVMASLYTALPLTATFAEDFHVPESIATLNGVLFSLTYSIS CLFYGTISEKYGRIKTILVGMSALVIICLMIGIVHSFTVLLILRALQGVFAASFSPVVMT YTTETYPRVKRVTAISFISTSFMLSGVLGQNMSELVVSYLNWQWVYFILTILYLILVLVI YKNVPESPHKNPDIQLFKFFNNFKDFKDNLKVFYCLFISLTLLIMFISMYDILNEYVTSH QVGGDMSVSSMMKLFGVIGMLLSLFAGRLSSRIGMKRLITIALTTCIVSIILMGVTTNII LITTFSVLFVAGIAFAIPTVISKVGVVVKNNQGFFLSVNTFVLFLGTAIAPILMLFVGEL SNFFLQFLMIAIVGLIALVVSIFMPGDQRS >gi|224999850|gb|ACJC01000150.1| GENE 8 7418 - 8107 810 229 aa, chain + ## HITS:1 COG:SA2448 KEGG:ns NR:ns ## COG: SA2448 COG1853 # Protein_GI_number: 15928241 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Staphylococcus aureus N315 # 1 228 1 228 230 437 93.0 1e-123 MNYSPKQGVKSHGLPHDPFKSSTVPRPIGWISTVSKKGKDNLAPYSQYQNLTWDPPMVMF AANQSVLGDHERKDTVKNAEETGWFVWNMATYDLREAVNLSSKALPPEDDEFDFAGVTKE SCIEAPGSRVKESPVHFECEYVQTVRIPTGDPVSTVDIVIGRVAQVHIDDKVIMDNGKLD IKSIRPIARLGYYDYTVVDEIFEMKAPAASKEELAGLEGRNFDNTNKES >gi|224999850|gb|ACJC01000150.1| GENE 9 8339 - 8515 165 58 aa, chain - ## HITS:1 COG:no KEGG:SERP2267 NR:ns ## KEGG: SERP2267 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 58 1 58 58 77 100.0 2e-13 MFTISIIAMIIGVVLIVLSQIIYHSKPIDAKEKMFIPGVCLFLVGLLSLIGHFVNGYV >gi|224999850|gb|ACJC01000150.1| GENE 10 8829 - 9257 485 142 aa, chain - ## HITS:1 COG:lin2302 KEGG:ns NR:ns ## COG: lin2302 COG1764 # Protein_GI_number: 16801366 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Listeria innocua # 5 139 4 137 138 136 53.0 1e-32 MANSIYSTTMISNGGRDGRVFSPDNTFVQNLATPKEMGGQGGNDTNPEQLFAAGYSACFN SALSLILSQNKISDANPEVEITIELLKDDTDNGFKLGADIKVTLENMSQQDAEKFVEQAH QFCPYSKATRGNIDVQIDVTAQ >gi|224999850|gb|ACJC01000150.1| GENE 11 9507 - 11537 2443 676 aa, chain + ## HITS:1 COG:no KEGG:SERP2264 NR:ns ## KEGG: SERP2264 # Name: not_defined # Def: cell wall surface anchor family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 676 1 676 676 846 96.0 0 MKRTDKIGVYLKLSCSALLLSGSLVGYGFTKDAFADSESTSSNVENTSNSNSIADKIQQA KNDIKDLKELSDADIKSFEERLDKVDNQSSIDRIINDAKDKNNHLESTDSSATSSKTEDD DTSEKDNDDITKDLDKILSDLDSIAKNVDNRQQDEGSVSKPSDSTTDEEDDSNNKVHDTS ASTRNATTDDSEESVIDKLDKIQQDFKSDSNNKPSEQSNQQASSSNKTENNKEESSTTTN QSDSDSKDDKSNDGRRSTLERLASDTDQIRDSKNQHVTDGKQDIQAITRSLQGSDKIEKA LAKVQTDNQSLDSNYINNKLMNLRALDTKVEDNNTLSDDKKQALKKEIDKTKQSIDRQRN IIIDQLNGASNKKQATEDILNSVFSKNEVEDIMKRIKTNGRSNEDIANQIAKQIDGLALT SSDDILKSMLDQSKDKESLIKQLLTTRLGNDEADRIAKKLLSQNLSNSQIVEQLKRHFNS QGTATADDILNGVINDAKDKRQAIETILQTRINKDKAKIIADVIARVQKDKSDIMDLIHS AIEGKANDLLDLEKRAKQAKKDLEYILDPIKNRPSLLDRINKGVGDSNSIFDRPSLLDKL HSRGSILDKLDHSAPENGLSLDNKGGLLSDLFDDDGNISLPATGEVIKQHWMPVAVVLMS LGGALIFMARRKKHQN >gi|224999850|gb|ACJC01000150.1| GENE 12 11906 - 13873 1844 655 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 1 537 1 501 502 320 50.0 7e-87 MKKNKFLVYLLSTALITPTFATQTAFAEDSSNKNTSSEKMEQHHAQKETSKQSEKDEFNN DDSKHDSDDKKSTSDSKDKDSNKSLSADSTHRNYKMKDDNLVDQLYDNFKSQSVDFSKYW EPNKYEDSFSLTSLIQNLFDFDSDITDYEQPQKTNHSSNDEKDQVDQEDQTKQPSQHQNH SQSSAKQDQEPSNDEKEKTTNHQDDSDVSDLLGEMDKEDQEGEDVDTNKNQSSSEQKQTQ ANDDSSERNKKYSSITDSALDSILDEYSQDAKKTEKDYNKSKNTSHTKTSQSDHADKNPQ LPTDDELKHQSKPAQSFEDDIKRSNTRSTSLFQQLPELDNGDLSSDSFNVVDSQDTRDFI QSIAKDAHQIGKDQDIYASVMIAQAILESDSGKSSLAQSPNHNLFGIKGDYKGQSVTFNT LEADSSNHMFSIQAGFRKYPSTKQSLEDYADLIKHGIDGNPSIYKPTWKSEALSYKDATS HLSRSYATDPNYSKKLNSIIKHYHLTSFDKEKMPNMKKYNKSIGTDVSGNDFKPFTETSG TSPYPHGQCTWYVYHRMNQFDSSISGDLGDAHNWNNRAESEGYTVTHTPKNHTAVVFEAG QLGADTQYGHIAFVEKVNDDGSIVISESNVKGLGVISFRTIDAEDAQDLDYIKGK >gi|224999850|gb|ACJC01000150.1| GENE 13 14162 - 17020 2935 952 aa, chain + ## HITS:1 COG:SA2436 KEGG:ns NR:ns ## COG: SA2436 COG1511 # Protein_GI_number: 15928229 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 952 1 993 993 1239 66.0 0 MKNALKLFITDLKRVAKTPGVWVILAGLAILPSFYAWFNLWAMWDPYGHTGHIKVAVVNE DQGEKVRGKNINVGNKMVKTLKKNDSFDWQFVSREKADHEIKMGKYYAGIYIPKKFTHEI TGTLRKHPQKADIDFKVNQKINAVAAKLTDTGSSFVIDKANKQFNKTVATALLSEANKVG LSIEDNVPTINKIKSAVYQANNSLPKINQFADKIIELNKHQDDLDAYANQFRSLGKYKGN VLDAQEKLNAVNSSIPALNERAKLILALDSYMPNIERILNVAANDVPAQFPRINRGVDIA SEGIDAASGQLNDAKGYLTQAKARVGDYQEAAGRAQDVNNQANQNLRNQASTTPQSAIKS SHSEGKSHSNIKTVPVSQSGENQPVYSDNILSNSDVKSMNTALTEALLSLSNQTDQQAQA TQQDIKSLKNIAYGVIASDKPSEFKEPLKNIKSRLENASKYNQQFIDILSELEKSEHVDL SNEIKQVKEANNSINDNLKSTNQLIDALSNGSSGQLEAVNVLRDLPSLNKRLDTLRNYIK KELNRNLLAVSNEITDQLNKGQNTLSTIQSKLNTINQVINAGQDILNSGKKRIDTIQTAL PAIENAYINAMRTAQAYFPTAKKDVAKAADFVRNDLPGLERELANVTQSVNQKIPSLFSR YDNAVDLLNEKQPQAKEALASLADFSENKLPDVEKDLKKANKIFKKLDKDDAVDKLIDTL KNDLKKQADIVANPINKKTTDVFPVKDYGSGMTPFYTALSIWVGGLLMVSLLSVDNKHEH LQPIMTKRQVYLGKSGFFFLLGIIQALIVSIGDLVILKASIESPILFVSVAVFSSLVFNS IIYTSVSLLGNPGKAVAIILLVLQIAGGGGTFPIQTTPEFFQAISPYLPFTYSIDALRET VGGIVPEILITKVIILGLFGIGFMVVGYCLKPVTDPIIRKIAEKADESKVTE >gi|224999850|gb|ACJC01000150.1| GENE 14 17331 - 18017 639 228 aa, chain - ## HITS:1 COG:SA2435 KEGG:ns NR:ns ## COG: SA2435 COG1482 # Protein_GI_number: 15928228 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Staphylococcus aureus N315 # 1 221 89 309 312 302 68.0 3e-82 MSVQVHPDDEYALKHEGEYGKTECWYILDAQPGAEIIYGVNATSKNELEHMIDHHEFDYL FKHVPVKPGDFFYVPAGTVHAIGSGILILETQQSSDTTYRIYDYDRKDKNGHTRELHLNQ SKDVIDITTTEPNTTPKTEMINGNQYTQFVANHFFTVEEWSIKDILDFQKPHTYCLVSMI NGHGQVSINNEVYKIDKGDHFILTSEDQYINFVGNMDIIVSFSKDEAS >gi|224999850|gb|ACJC01000150.1| GENE 15 18099 - 18281 213 60 aa, chain - ## HITS:1 COG:SA2435 KEGG:ns NR:ns ## COG: SA2435 COG1482 # Protein_GI_number: 15928228 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Staphylococcus aureus N315 # 1 60 1 60 312 96 66.0 1e-20 MVLFLQPVFQERLWGGTNLTQFGYDIPNNSTGECWAISAHKNGPNTILNGKHKGKSLKQV >gi|224999850|gb|ACJC01000150.1| GENE 16 18297 - 20237 2329 646 aa, chain - ## HITS:1 COG:SA2434_2 KEGG:ns NR:ns ## COG: SA2434_2 COG1299 # Protein_GI_number: 15928227 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 128 498 1 371 371 554 82.0 1e-157 MKILAVTSCPNGIAHTYMAQEKLEQAAKDMGVDIKVETQGGVGAENVLTSKEIKEADGII IAADRQVDLSRFNGKPLINESVREGIHRPKELIQRVIDQDAQIYHDQNISTNMSRDQEES HKSNIQMVYQHLMNGVSFMVPFIVVGGLLIAIALTLGGHTTPKVLVIPEDSFWKSIENIG SLSFKFMVPILAGYIAVSIADKPGLVPGMIGGAIAADGSLYGSEAGAGFLGGIVAGFLAG YIAKWIKQIKVPKAMASIMPIIIIPILSSLIVGLIFIFVIGAPISNIFGALTSWLKGMQG ANIIILALIIGAMIAFDMGGPVNKVAFLFGSALIAEGNYTVMGMVAVAVCTPPIGLGLAT FVRKHQFNKAEQEMGKASFTMGLFGITEGAIPFAAQDPLRIIPANMIGAMFASVIAAIGG VGDKVAHGGPIVAVLGGISNILWFFVAVIVGSLATMLTILLFKRHTPATTKSSSGNDTSV GTDNVFSDDQSTNHTTQSSHHIVFDKSLIEITKEPMTRDQAIDRLLTKLCHRHYITNIEE VRTAILKREAESTTAIGMNVAIPHAKSHAVKRPIVAVLNHKAGVEWESLDESNPQLIFLI AVPNDNNDTHLKLLQRLSRTLMKDNTRDELIHAQSRDEIFNILKEI >gi|224999850|gb|ACJC01000150.1| GENE 17 20322 - 21908 1162 528 aa, chain - ## HITS:1 COG:SA2433_1 KEGG:ns NR:ns ## COG: SA2433_1 COG3711 # Protein_GI_number: 15928226 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Staphylococcus aureus N315 # 1 380 96 478 484 336 50.0 7e-92 MEKHTFTIKELSSTYHLTKSKVIDYITRIQTWAIKFDIYLSIKKKQGIMIDASTTSISNA VLHINQLTDDDFKVENLILQELPQAHTRKIKQIISKHIDNHQLSTSENKIQQLLVHLILI IKHSQPEEEDWSTDSESLTIAKKCIKDINETLGYQLNNKTSECFSFFISYHYNKFDLGVQ QLFIQSYIDRLVELMEQHIGFPFSQDTILKDNMNVHFSRTYLRLMRHVYLNNPLTSQIKR LYPFVFNTLYDSIRQLSQDTNIQLSEDEIAFLTIHFQSSIECHKSSHIHVVIACYYGLGI STLLAEKIKQLNHAIQIVDTLKLEDINDYHFEGIDLLITTQDFDTSQLLQTPKVIQVSPL FSDDDAKKIEFFIKAMQNPLSKDDILSKIQLSVESNFKLNHSNHILPIFEKSKEILDYHH ATLDGYIESAIDREKQSSTYIGKGIALPHGNPEKVLKSHMIIFKPSQPITWKQHKVKLVF FLAMSKKDLNINRKIIQTIAQLEEDDIHQLCLLDDLQLKNTLYARFKE >gi|224999850|gb|ACJC01000150.1| GENE 18 21981 - 22193 115 70 aa, chain - ## HITS:1 COG:SA2433_1 KEGG:ns NR:ns ## COG: SA2433_1 COG3711 # Protein_GI_number: 15928226 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Staphylococcus aureus N315 # 1 68 1 68 484 65 47.0 2e-11 MIDRQIKLIKLLLNYTDTYISGHDIAKQLNVSNRTIRNDIKTIHTTFLNELILSVQSKGY LLNTWLYTPD >gi|224999850|gb|ACJC01000150.1| GENE 19 22512 - 22709 238 65 aa, chain - ## HITS:1 COG:no KEGG:SE2226 NR:ns ## KEGG: SE2226 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 65 1 64 64 107 96.0 1e-22 MYVKNSYVSVSQTTTREDYIIMSGIVESLHNAVNAGLHVKQDWVDMGFGIADTVAKIVDQ VLKFV >gi|224999850|gb|ACJC01000150.1| GENE 20 22948 - 23727 203 259 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 254 3 238 242 82 28 3e-15 MSNSKKVAVVTGAAQGIGLKIAERLFEDGYSIALVDFNEAVAKESAEKLSKEGQEAVAFK ADVSNRDQVFSVLNQVVEHFGDLNVLVNNAGLGPMTPIESVTPEQFNQVVGVNVGGVFWG IQAAIEQFDKLGHGGKIINATSQAGVEGNAGLSLYSSTKFAVRGLTQVAARDLAEKNITV NAFAPGIVETPMMKGIAEKLAEENNQPMEWGWKQFTDQIALKRLSKPEDVANVVSFLAGS DSDYITGQTIIVDGGMRFH >gi|224999850|gb|ACJC01000150.1| GENE 21 24173 - 26338 2143 721 aa, chain - ## HITS:1 COG:no KEGG:SaurJH9_1546 NR:ns ## KEGG: SaurJH9_1546 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: not_defined # 5 721 3 720 720 713 54.0 0 MTDLKINDRDIAEINGFWAYQNTRNKEFTVNGKTFKVIDSYDDASTSNSQGASDSKTIEL LTKDGKYTGQQLIVHQGTDNNETINPNNPLKGKLADDWLQNIKLMNDKNKSTSLIKQNNQ YLDDYQKKISDAKHLNKDDFYKKYGIKKTFFKDKKLVYGGGNSQGAVGAKLAGVKNPNLK VVTTDPATLPEASWRGTKSKKHNNIINYHSTYDILSWVQDPVFKNNPGKRVDLKTGVPTL EGLADSHLGYKRKFNKIDNTYKDIPVKKIKSVKDTDTKKGKSKPKTINITLDMDDRIPIN VWTGESISRSGNGTLIKLDIEKLENLHNLVTGETSKMLSECVKYLNESFNISQHENNNFS NRKHKLKSDFIDKICLDSLENLCNSIKHKRQSFEEAIDQVHKVIDPIIGLIPSIGLKSLE EYISEIVRNLEKGIEAIHDTLEAKIQKIFQNLDNDFNDGVAEEMMKHLQVVSRNILQVKQ QNDIYGRQIADIKNIMSQQDATIMDGNTNISYSGENMVYGSIESSNYLTRKMSILKDHID KGIKDLAEYVEELYNEYFKPVKDDIDKTVTALTNAKLSIYSIKTMLKNPAIITALKASPF SPSIVISALERLVGEIDKWVSLLNDLKIASPILENHLDDIIENAKPTIVNMIFEPSHYDD MFILNTQAQARLDQMAQQFEVVCNGLNENAGQAIKTMDESASVIRSNMSKVNAQLEKLAV Y >gi|224999850|gb|ACJC01000150.1| GENE 22 26319 - 27233 717 304 aa, chain - ## HITS:1 COG:no KEGG:SERP2255 NR:ns ## KEGG: SERP2255 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 304 1 304 304 523 94.0 1e-147 MRKLIATIIVSSLILGGCSTVNEEKNYASQSIPASQYKGQGFQPVAEKSAIAHAKKHREE YEKLGEQFFKDNFSLNVKATNVVGSGDGVEVYVHCDDHDIVFNASIPFDKESIHEEGSMR SNDNGDTMSDMVGTVLSGFEYRANKEKMDNLEKYLKDKEDKYHYTGFTDEAINKTQNIGY QNNYFYLTTSSTKLRDYRKHFEPLIKESNDDFKKHMEQLKSKKDTYLNTEITTTLFSTLD EYDEKIIRKNTLSMAKEMRKEPSIPHNFTFNLLFSNNKLKINDPNINNNQINEYGVFDHD GFKN >gi|224999850|gb|ACJC01000150.1| GENE 23 27436 - 27939 330 167 aa, chain - ## HITS:1 COG:no KEGG:SE2221 NR:ns ## KEGG: SE2221 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 167 1 166 166 138 91.0 6e-32 MKKFLATIVVIILICALGFSVYAAINHHTNSNKNDKKIEHNRKNKQNNTSNQNRDTHQQQ DQTQPTNGDYNNDNQSGTEQPAQQPNYHQYPNHNQQSGSNKNNSSVNNKQKPNQNKTNQS DHQPAQSIPQQSSQPNHNQSDSQQNGNSNNNSNNQNHGTNDNQKQNR >gi|224999850|gb|ACJC01000150.1| GENE 24 28245 - 29489 1399 414 aa, chain + ## HITS:1 COG:SA1814 KEGG:ns NR:ns ## COG: SA1814 COG0624 # Protein_GI_number: 15927582 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Staphylococcus aureus N315 # 1 412 1 407 407 327 42.0 2e-89 MRVLSNEERVKILSDIVSIKTVNSNELEVAQYLEKLFNQYGIRSHIDTVTDGRANLIATV GSSQPVIGISGHMDVVSEGNHDHWTYDPFTLTEDQGYLYGRGAADMKSGLAALAIALIEI KESGKLKQGTIKFMATVGEEMEQSGSQQLFEKGYADDLDALLIAEPSFPSLVYAHKGSMD FRIKSKGRASHSSLPFLGQNAIKPLLEFIQNIDQEYEKITQSVKGESLDFSNMINNLGSQ LPNHITKEKAQELIQGLVMTNSIVHGGTQVNSVPDFATAEFNVRTIPEYNNNKVKALFNE YIEQANQNGASLTQELYLDLEPVVTTGQNRLVELGFDIAKSHFSNARDLIVTPTVAVTDA SNLLKGKDEKFPFLMFGPGNGPHQINECVEKANYLEFVEYYIEFITSYLNEENE >gi|224999850|gb|ACJC01000150.1| GENE 25 29921 - 31444 1998 507 aa, chain + ## HITS:1 COG:SA2430 KEGG:ns NR:ns ## COG: SA2430 COG3227 # Protein_GI_number: 15928223 # Func_class: E Amino acid transport and metabolism # Function: Zinc metalloprotease (elastase) # Organism: Staphylococcus aureus N315 # 1 507 1 508 509 679 71.0 0 MKNFSKFALTSIAALTVASPLVNTEVDAKDKVSATQNIDAKVTQESQATNALKELPKSEN IKNHYKDYKVTDTEKDNKGFTHYTLQPKVGNTYAPDKEVKVHTNKEGKVVLVNGDTDAKK VQPTNKVSISKENATDKAFEAIKIDRQKAKNLKSDVIKTNKVEIDGEKNKYVYNIEIITT SPKISHWNVKIDAETGQVVDKLNMIKEAATTGTGKGVLGDTKQININSVSGGYALQDLTQ QGTLSAYNYDANTGQAYLMQDKDRNFVDDEQRAGVDANYYAKETYDYYKNTFGRESYDNQ GSPIISLAHVNNFQGQDNRNNAAWIGDKMIYGDGDGRTFTALSGANDVVAHEITHGVTQQ TANLVYRSQSGALNESFSDVFGYFVDDEDFLMGEDVYTPGVGGDALRSLSNPERFGQPSH MNDFVYTNSDNGGVHTNSGIPNKAAYNTIRSIGKQRSEQIYYRALTVYLTSNSDFQDAKA ALQQAAFDLYGDGIAQQVGQAWDSVGV >gi|224999850|gb|ACJC01000150.1| GENE 26 31966 - 32427 432 153 aa, chain + ## HITS:1 COG:SA2429 KEGG:ns NR:ns ## COG: SA2429 COG1438 # Protein_GI_number: 15928222 # Func_class: K Transcription # Function: Arginine repressor # Organism: Staphylococcus aureus N315 # 1 148 1 148 149 156 55.0 1e-38 MKKSKRQDLVTMIVKQNHIYKKADIIDYIDDHFGVRYSMTTIARDLRELHIYRLPVKANQ YEYKLLTQQSQLDSRVKLNDYIETEIINTMIKESYILIKTTPGFAQSINYYIDQLQLKEI IGTISGNDTIMILTHSQSIAEYVYYKIFNHNYS >gi|224999850|gb|ACJC01000150.1| GENE 27 32765 - 34000 1072 411 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149020061|ref|ZP_01835035.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP23-BS72] # 1 411 1 409 409 417 53 1e-116 MTNGPIQVNSEIGKLKTVLLKRPGKELENLVPDYLDGLLFDDIPFLKVAQQEHDRFAQVL QDEGIEVLYLEKLAAQSIEDSNVREQFIDDVLAESRKTILGHETEIKKLFSTLSNQALIN KIMAGVRKEEIQLESTHLVEYMDDKYPFYLDPMPNLYFTRDPQASIGKGMTVNRMFWRAR RRESIFISYILKHHPRFKDENVPLWLDRDCPFNIEGGDELVLSKDVLAIGISERTSAQAI ERLARRIFKDPLSTFKKVVAIEIPTSRTFMHLDTVCTMIDYDKFTTHSAILKSEGNMNIF IIEYDDKAEDIKIQHSSHLKQTLEEVLNVDEITLIPTGNGDIIDGAREQWNDGSNTLCIR PGVVVTYDRNYVSNQLLREHGIKVIEIPGSELVRGRGGPRCMSQPLIREDL >gi|224999850|gb|ACJC01000150.1| GENE 28 34105 - 35112 1162 335 aa, chain + ## HITS:1 COG:SA2427 KEGG:ns NR:ns ## COG: SA2427 COG0078 # Protein_GI_number: 15928220 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 1 335 1 335 336 572 82.0 1e-163 MKNIKKPFDLKGKSLLKEYDLTGEEFEGLIDFAMTLKKYKQQGTPHRYLEGKNIALLFEK TSTRTRAAFTVASIDLGAHPEFLGKNDIQLGKKESVEDTAKVLGRMFDGIEFRGFSQKTV EQLAEFSGVPVWNGLTDDWHPTQMLADYMTIKENFGYLKGINLTYVGNGRNNVAHSLMVA GAMLGVNVRICTPSSLTPRDVYFNIAKDQASNYGGSVKMTDNIHTAVKDADVIYTDVWVS MGEESEFETRIHLLKDYQVNRKMFNLTGKVNTIFLHCLPAFHDTQTEYGQDIFEKYGLTE MEVTDEIFRSEHSRVFDQAENRMHTIKAVMAATLG >gi|224999850|gb|ACJC01000150.1| GENE 29 35372 - 36775 1418 467 aa, chain + ## HITS:1 COG:SA2426 KEGG:ns NR:ns ## COG: SA2426 COG0531 # Protein_GI_number: 15928219 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 467 1 467 476 662 82.0 0 MNDTGDKRLSRTSLIGLVIGSMIGGGAFNIQSDMGGHAGGLAIIIGWLITAIGMISLALV FQNLTNERSDLDGGIYSYAQAGFGDFIGFASAWGYWFSAFLGNVAYATLLMSSIGNFFPI FKGGNTFPSIIVASILLWSVHFLILKGVETAALINSIVTITKLIPILLVIICMIVAFNFN TFRIGFFGMDGYGSLSFHFANTMSQVKSTMLVTVWVFIGIEGAVVFSGRAKNKKDVGIAT VIGLISVLLIYFLLTVLAQGIVIQNHISKLEAPSMAQILAYIVGDWGATFVNIGLIISVL GAWLGWTLLAGELPFIVAKDGLFPKWFAKENKNGAPMNALFITNVLVQIFLISMLFTKSA YHFAFSLAASAILYPYMFSAFYQVKYTIEHKLTATPKQWIIGILASIYAIWLVYASGIDY LLLTMLLYIPGIIVYVVVQKNNQKRLTQFDYIFFSIIVILALIGLLR >gi|224999850|gb|ACJC01000150.1| GENE 30 37020 - 37706 631 228 aa, chain + ## HITS:1 COG:SA2424 KEGG:ns NR:ns ## COG: SA2424 COG0664 # Protein_GI_number: 15928217 # Func_class: T Signal transduction mechanisms # Function: cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases # Organism: Staphylococcus aureus N315 # 1 228 1 228 234 292 60.0 4e-79 MTGNQMFYRENELDESFKQLASYINIPVGVLLPFKSQCFVRHYNKGQIVYYSSDETTHIY LLLKGNIMRENFNLNGDVYRYLNREKVLFPLNNLFQDKVPNEMCTALTDCEMIGIPRDLI EYLCKNHEEIFVKLFSLLSETQCQHIEYNMALTSKLAKERVTKILRYLCQTVGYDHDEFY EIKHFMTIQLLSDMAGISRETTSHIINELREEKILFKNSKNWLVSKDL >gi|224999850|gb|ACJC01000150.1| GENE 31 37999 - 38757 773 252 aa, chain + ## HITS:1 COG:SA2422 KEGG:ns NR:ns ## COG: SA2422 COG0627 # Protein_GI_number: 15928215 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 251 1 251 253 391 75.0 1e-109 MALITMNYNSPTIGMHQNLTIILPEDVTFFDSSRTAKHLKSMLLLHGLSSDETTYIRYTS IERYANEHQLAIIMPNVDHSGYANMVYGHSYYDYILEIYEYVHQILPLSRKREDNFIAGH SMGGYGTIKFALTQSDKFAKAAPLSAVFEAQRLIDLDWIDFSPQAITGRDSQIKGTELDT YYLLDQAIDANVDIPKLFIMCGKEDFLYHDNLQFIETLNEKGVSYKFEDGPGDHDYAYWD RAIKRAIEWFVQ >gi|224999850|gb|ACJC01000150.1| GENE 32 39010 - 40176 1269 388 aa, chain + ## HITS:1 COG:SPy0818 KEGG:ns NR:ns ## COG: SPy0818 COG2843 # Protein_GI_number: 15674859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Streptococcus pyogenes M1 GAS # 8 347 50 397 430 162 30.0 9e-40 MKTVSKYLVYTMILFTFFIVVSGCTINQSFGNKQNANKTIRVVAVGDNLIHPVVYKDAQI TGNSFDFKPMYQPVRKDIQNADISFVNQESPLGGDDRPYSGFKNFNTPSSIAQNLVDTGF NFVNGANNHALDQGEQGVSNHIHTWNKFKYQVLFTGVYESEQAHRQIPIKTIKGVKVALL SYTFGTNDHQPTHDYTVDTFDENKIKQDVKKAKQQSDVVLVSAHWGNEGKHQPNATQKKY AQIFADAGVDVVLGTHPHVIQPVKWVDGREGNRTLVAYSLGNFLNGQSTGNESNDLLGRI DFKISKKDKQFQVQDVKWRSMVNYYELTQHQNQFLKSNFKVMMLDDYNDKDATHHGRNQM DSSSMSPAHLRDITRSVIDKQYLDNRSL >gi|224999850|gb|ACJC01000150.1| GENE 33 40523 - 42172 1871 549 aa, chain - ## HITS:1 COG:SA0182 KEGG:ns NR:ns ## COG: SA0182 COG3961 # Protein_GI_number: 15925892 # Func_class: G Carbohydrate transport and metabolism; H Coenzyme transport and metabolism; R General function prediction only # Function: Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes # Organism: Staphylococcus aureus N315 # 1 547 1 546 546 818 72.0 0 MKQRVGQYLMDAVYSAGADKVFGVPGDFNLAFLDDIIAHNHIKWIGNTNELNASYAADGY ARINGIGAMVTTFGVGELSAVNGIAGSYAERVPVIAITGAPTRAVEQEGKYVHHSLGEGT FDDYRKMFEPITTAQAYITPDNATTEIPRVINAAIQQRRPVHIHLPIDVALTEIEVSKPF KAEVEPQKDVQSYINMVQDKLESATQPVIITGHEINSFHLHKELEQFVDQTQIPVVQLSL GKGAFNEENPYYMGIFDGSIAEQDIQDYVNQSDAILNIGAKLTDSATAGFSYQFDINDVI MLNHNEFKINDTCIEAFSLPNILNGLNKYIHYKNTNDFPQYERPQAHNYELSNQPLTQET YFNMMQDFLQQDDILIAEQGTSFFGAYDLALYKDNTFIGQPLWGSIGYTLPATLGTQIAN PYRRNILLIGDGSLQLTVQSLSTMIRQHLNPVIFVINNDGYTVERMIHGMKEPYNDIRMW DYKSLPSVFGGDNVLVHDVNTSEELMLTFENIKSNSDRMHFVEVKMSVEDAPAKLSNIAK AFASQNKSS >gi|224999850|gb|ACJC01000150.1| GENE 34 42342 - 42788 523 148 aa, chain + ## HITS:1 COG:SA2421 KEGG:ns NR:ns ## COG: SA2421 COG1846 # Protein_GI_number: 15928214 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 148 7 154 157 205 75.0 3e-53 MSKNKNDYEHMLFYFAYKTFITTADEIIEQYGMSRQHHRFLFFINKLPGITIKELLITLE ISKQGSHATLRKLKEEGLIIEQTSKQDRRVKKLFTTEAGDDLIGKLNQAQDELIQQTLQK VGHDWYAMMEELANYREGFKTIEHLKED Prediction of potential genes in microbial genomes Time: Sun May 29 08:04:37 2011 Seq name: gi|224999849|gb|ACJC01000151.1| Staphylococcus epidermidis W23144 contig00195, whole genome shotgun sequence Length of sequence - 81753 bp Number of predicted genes - 78, with homology - 78 Number of transcription units - 33, operones - 19 average op.length - 3.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 3.4 1 1 Op 1 . + CDS 208 - 3258 3025 ## COG1511 Predicted membrane protein 2 1 Op 2 . + CDS 3259 - 3690 450 ## SAOUHSC_00259 hypothetical protein 3 1 Op 3 4/0.000 + CDS 3687 - 3929 278 ## COG5417 Uncharacterized small protein 4 1 Op 4 4/0.000 + CDS 3945 - 5270 1326 ## COG4499 Predicted membrane protein 5 1 Op 5 . + CDS 5292 - 9731 4088 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 6 1 Op 6 . + CDS 9745 - 10137 520 ## SaurJH9_0272 hypothetical protein 7 1 Op 7 . + CDS 10158 - 10472 464 ## SaurJH9_0273 hypothetical protein 8 1 Op 8 . + CDS 10472 - 11149 561 ## SAOUHSC_00266 hypothetical protein 9 1 Op 9 . + CDS 11150 - 11458 472 ## SAOUHSC_00267 hypothetical protein 10 1 Op 10 1/0.500 + CDS 11468 - 13321 1509 ## COG5444 Uncharacterized conserved protein 11 1 Op 11 1/0.500 + CDS 13333 - 13827 494 ## COG5444 Uncharacterized conserved protein + Term 13839 - 13885 5.5 + Prom 13875 - 13934 8.3 12 2 Op 1 1/0.500 + CDS 13975 - 14373 169 ## COG5444 Uncharacterized conserved protein 13 2 Op 2 . + CDS 14385 - 14879 601 ## COG5444 Uncharacterized conserved protein + Term 14891 - 14937 5.5 + Prom 15349 - 15408 5.3 14 3 Op 1 . + CDS 15436 - 15705 184 ## SAR0294 hypothetical protein 15 3 Op 2 . + CDS 15768 - 15929 156 ## gi|242243589|ref|ZP_04798033.1| conserved hypothetical protein + Term 15941 - 15988 11.2 + Prom 16758 - 16817 2.9 16 4 Op 1 . + CDS 16842 - 17255 203 ## gi|242243574|ref|ZP_04798018.1| hypothetical protein HMPREF0791_2099 17 4 Op 2 . + CDS 17269 - 17643 377 ## SLGD_01979 hypothetical protein 18 4 Op 3 . + CDS 17665 - 18054 403 ## SAS0281 hypothetical protein 19 4 Op 4 . + CDS 18056 - 18448 399 ## SLGD_01977 hypothetical protein + Term 18470 - 18506 -1.0 20 4 Op 5 . + CDS 18511 - 19197 326 ## SLGD_01954 hypothetical protein 21 4 Op 6 . + CDS 19197 - 19382 126 ## gi|242243579|ref|ZP_04798023.1| hypothetical protein HMPREF0791_2104 + Term 19463 - 19525 15.6 22 5 Op 1 . + CDS 19726 - 19908 65 ## gi|242243581|ref|ZP_04798025.1| hypothetical protein HMPREF0791_2106 23 5 Op 2 . + CDS 19902 - 20309 360 ## BC3301 putative cytoplasmic protein 24 5 Op 3 . + CDS 20330 - 20527 259 ## gi|242243583|ref|ZP_04798027.1| hypothetical protein HMPREF0791_2108 25 5 Op 4 . + CDS 20505 - 20774 288 ## gi|242243584|ref|ZP_04798028.1| hypothetical protein HMPREF0791_2109 + Prom 20849 - 20908 4.8 26 6 Op 1 1/0.500 + CDS 20956 - 21255 118 ## COG5444 Uncharacterized conserved protein 27 6 Op 2 1/0.500 + CDS 21252 - 21413 109 ## COG5444 Uncharacterized conserved protein 28 6 Op 3 1/0.500 + CDS 21424 - 21918 574 ## COG5444 Uncharacterized conserved protein 29 6 Op 4 1/0.500 + CDS 21944 - 22474 605 ## COG5444 Uncharacterized conserved protein 30 6 Op 5 . + CDS 22501 - 23031 567 ## COG5444 Uncharacterized conserved protein + Term 23043 - 23089 5.5 31 7 Tu 1 . - CDS 23455 - 23739 304 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 23800 - 23859 4.7 - Term 24098 - 24135 -0.9 32 8 Tu 1 . - CDS 24181 - 24957 355 ## gi|242243592|ref|ZP_04798036.1| hypothetical protein HMPREF0791_2117 + Prom 26277 - 26336 8.6 33 9 Tu 1 . + CDS 26362 - 27681 1270 ## COG4195 Phage-related replication protein + Term 27717 - 27763 3.6 + Prom 28250 - 28309 9.4 34 10 Op 1 . + CDS 28387 - 30720 1681 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Term 30754 - 30814 6.6 + Prom 30797 - 30856 5.7 35 10 Op 2 . + CDS 30911 - 32455 1279 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 32510 - 32566 11.6 - Term 32505 - 32546 7.0 36 11 Tu 1 . - CDS 32579 - 34048 1688 ## COG1785 Alkaline phosphatase - Prom 34090 - 34149 10.4 37 12 Op 1 . + CDS 34345 - 34524 233 ## SE2196 hypothetical protein 38 12 Op 2 40/0.000 + CDS 34555 - 35220 423 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 39 12 Op 3 4/0.000 + CDS 35226 - 36122 743 ## COG0642 Signal transduction histidine kinase 40 12 Op 4 36/0.000 + CDS 36173 - 36982 182 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 41 12 Op 5 . + CDS 36984 - 38996 1263 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 39000 - 39059 2.4 42 13 Tu 1 . + CDS 39100 - 39690 718 ## SERP2202 hypothetical protein + Term 39699 - 39747 -0.8 43 14 Op 1 . + CDS 40212 - 40391 192 ## SERP2201 putative symporter YidK 44 14 Op 2 . + CDS 40437 - 41201 785 ## COG4146 Predicted symporter 45 14 Op 3 . + CDS 41241 - 41804 349 ## COG4146 Predicted symporter 46 15 Op 1 . + CDS 41934 - 43118 1000 ## SE2189 hypothetical protein 47 15 Op 2 . + CDS 43115 - 44224 1065 ## SE2188 hypothetical protein + Prom 44268 - 44327 8.3 48 16 Op 1 . + CDS 44368 - 45693 861 ## COG2339 Predicted membrane protein 49 16 Op 2 . + CDS 45699 - 46448 794 ## SERP2197 hypothetical protein + Term 46463 - 46510 10.1 + Prom 46522 - 46581 4.9 50 17 Op 1 . + CDS 46611 - 47108 366 ## COG1846 Transcriptional regulators 51 17 Op 2 1/0.500 + CDS 47125 - 48468 460 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 52 17 Op 3 . + CDS 48481 - 48957 474 ## COG0386 Glutathione peroxidase + Term 49053 - 49102 10.4 + Prom 49042 - 49101 8.7 53 18 Tu 1 . + CDS 49272 - 50003 776 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes + Prom 50174 - 50233 7.1 54 19 Op 1 11/0.000 + CDS 50259 - 52145 1730 ## COG0369 Sulfite reductase, alpha subunit (flavoprotein) 55 19 Op 2 3/0.000 + CDS 52165 - 53883 1812 ## COG0155 Sulfite reductase, beta subunit (hemoprotein) 56 19 Op 3 2/0.250 + CDS 53905 - 54684 771 ## COG0007 Uroporphyrinogen-III methylase + Prom 54686 - 54745 5.0 57 20 Op 1 . + CDS 54772 - 55383 600 ## COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 58 20 Op 2 . + CDS 55404 - 56303 850 ## COG0730 Predicted permeases 59 20 Op 3 2/0.250 + CDS 56327 - 57505 1526 ## COG2046 ATP sulfurylase (sulfate adenylyltransferase) 60 20 Op 4 . + CDS 57521 - 58120 735 ## COG0529 Adenylylsulfate kinase and related kinases + Term 58140 - 58186 5.3 + Prom 58393 - 58452 7.3 61 21 Tu 1 . + CDS 58472 - 58777 500 ## SERP2184 hypothetical protein + Term 58905 - 58955 9.0 + Prom 59007 - 59066 9.7 62 22 Op 1 12/0.000 + CDS 59095 - 60945 1946 ## COG1328 Oxygen-sensitive ribonucleoside-triphosphate reductase 63 22 Op 2 . + CDS 60942 - 61478 402 ## COG0602 Organic radical activating enzymes + Term 61528 - 61576 9.7 + Prom 61710 - 61769 8.5 64 23 Tu 1 . + CDS 61841 - 63139 1234 ## COG2704 Anaerobic C4-dicarboxylate transporter 65 24 Tu 1 . + CDS 63579 - 65183 1484 ## COG1292 Choline-glycine betaine transporter + Term 65190 - 65237 7.2 - Term 65178 - 65223 10.6 66 25 Tu 1 . - CDS 65233 - 65793 554 ## COG1510 Predicted transcriptional regulators + Prom 66180 - 66239 9.7 67 26 Op 1 10/0.000 + CDS 66274 - 67764 2019 ## COG1012 NAD-dependent aldehyde dehydrogenases + Prom 67789 - 67848 2.0 68 26 Op 2 . + CDS 67924 - 69642 1968 ## COG2303 Choline dehydrogenase and related flavoproteins + Term 69719 - 69758 7.7 + Prom 70214 - 70273 6.8 69 27 Op 1 . + CDS 70485 - 70703 133 ## SERP2174 hypothetical protein 70 27 Op 2 1/0.500 + CDS 70731 - 71177 289 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides + Prom 71267 - 71326 7.2 71 28 Tu 1 . + CDS 71519 - 73099 1571 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases + Term 73133 - 73173 4.0 + Prom 73356 - 73415 7.8 72 29 Op 1 1/0.500 + CDS 73462 - 76089 2750 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 73 29 Op 2 . + CDS 76160 - 76909 841 ## COG1806 Uncharacterized protein conserved in bacteria + Prom 76915 - 76974 8.4 74 30 Tu 1 . + CDS 77118 - 78617 1795 ## COG0579 Predicted dehydrogenase + Term 78625 - 78672 -0.9 + Prom 78817 - 78876 12.9 75 31 Op 1 . + CDS 79011 - 79460 474 ## SE2157 hypothetical protein 76 31 Op 2 . + CDS 79451 - 79933 652 ## SERP2167 putative lipoprotein + Term 79968 - 80009 10.2 - Term 79955 - 79996 10.2 77 32 Tu 1 . - CDS 80066 - 80956 1245 ## COG3588 Fructose-1,6-bisphosphate aldolase - Prom 81154 - 81213 8.2 78 33 Tu 1 . - CDS 81270 - 81683 499 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases Predicted protein(s) >gi|224999849|gb|ACJC01000151.1| GENE 1 208 - 3258 3025 1016 aa, chain + ## HITS:1 COG:SA0272 KEGG:ns NR:ns ## COG: SA0272 COG1511 # Protein_GI_number: 15925985 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 1016 1 1009 1009 1041 59.0 0 MTKKNWIYLSSVILIIIVAIVGMIAFVHFKYGNQTEDNTQKEVKNSENIHIAIVNEDQPT KYNGKKIELGEPFIKKLSKESNYKFETVTRSIADSGLKNGKYQVMIVIPKDFTKLAMQLD KKTPSKMSIQYKTAVGQKESIAKETEKVVSNVLNDFNKHLIEIYLTSIIDNLHNAQENVG DIMKREQGVNNNFANYLLNPLNDFPELFTDTLVNSITANKGITTWIQQYNHSLLSSNSNI FNISNDLSASSIVQDQDEWFEGNLSAMEQILEDYQSQRDNVDIEDYINHLKQVDNQLDKQ ADAKDQSKEEYKKTFKDRLSKVKDDVKKQESPFTDEMIEDYRKELTKSMRAQLDDNQDLK DALQQIKDDKQKMQDTMINHLRNDIEKDKIGQDQNYILNMSEQDLDNAGLSLKATREYKS ILNDVQQFKDEYNKAHPQDLIKQQDYNGEITADDTSKLINEGVKFERHETIKSRDINQLT IATDPNFDFDGYVYVNDKKYDIKNQDIKLDTTKKSYDVEIKGTAKLKNDSKYQSEFLKDK TMKLQVLFGQADKKDNANNDTNEEPDRVNVVDLSINHNLEGELISGDLDQQLRSLDKFKS HYDIFKDFNLNSDKPTIDNKAIVDMMVNQVIDDMKNFKNDKSQLLKQIDGLDNSSDKMIE DVMNNQDDIKKNKKDISNLISDLSQAEKTLNEEPKTPKIDKDKGEEFTTLSTNLDDQVSK LSERSTSLLSDVQNSKSNADQISGELNQLDDNVNNLHASGRALGTRANDLNEQMSNNDKK NQLFAKDFEKVLKNSKDGDRQNVALKDFMSNPIQKKNLENVLANNGDKDTMSPTILVLLM YLIAMMTAYVFYSYERAKGSLNLIKDEFSKNNRMWNNVIISSIITLTGLIEGVVIGLIAM NQYHIMPGYKVKFMFMIIMTMMLFVLINTYLFRQLKSIGMFIMMTTLGIYFVAMNYFNTN HTLNKFSPLSYVDTMIYNFLNAEHPVGMALFIMSVIVIIGFVLNMFIKHFKKERLI >gi|224999849|gb|ACJC01000151.1| GENE 2 3259 - 3690 450 143 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_00259 NR:ns ## KEGG: SAOUHSC_00259 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 143 1 143 152 163 66.0 2e-39 MLIEGLITMTLLTADSPRGSLDIQVDQEEKENVNKDLNQYDTTLFDKDSKKVNDALKKQR EKKDNKIKNGMFQNQASKNTRLDETKKVLFSPTNAEKAVESDKSPYIQNKQEKNVVPYIL LSIGAFLTVGFVIFSIRRGRRQK >gi|224999849|gb|ACJC01000151.1| GENE 3 3687 - 3929 278 80 aa, chain + ## HITS:1 COG:SA0274 KEGG:ns NR:ns ## COG: SA0274 COG5417 # Protein_GI_number: 15925987 # Func_class: S Function unknown # Function: Uncharacterized small protein # Organism: Staphylococcus aureus N315 # 1 80 1 80 80 105 75.0 2e-23 MKQHKKVTFDFTNYNYGTYDLAVPIHMSMKALLPLVLESLDIHLSDISNQIKVITKNQLL VENDRLIDYQITDGDILKLL >gi|224999849|gb|ACJC01000151.1| GENE 4 3945 - 5270 1326 441 aa, chain + ## HITS:1 COG:SA0275 KEGG:ns NR:ns ## COG: SA0275 COG4499 # Protein_GI_number: 15925988 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 441 6 444 444 532 72.0 1e-151 MANKKTSELKDLEPLDRQTNDEKHERRDMREIPKTSIKKEQSHLMYLLEQHTSYFLDAEL TELRDNYQVHYHITEHNIPFEKIKSFSKNEKLRYLLNIGKLEELRATRYTFNLSPDELYF TKDGLPLMKTRGLKNIVEPLPLSEDDFLLRYKSLIITAFNQKVNFDALVEGNLELHKGTP FENKIIQSKNLSELKQFLTEQYNKQQSDYTQNFSYVRKRKYNTFKWLGIAMSIIGVLLIA CLAYLYFFVMKNEEQVEKGYQSYVKADYTQVLNDYKDLDGKNLDKEALYIYAKSYIETNK QGLEKDKKENLLNSVTPDANKDYLLYWMQLGQGNLDEALNIATYLDDNDITKLALINKLN EIKNNSDLSNDKRSEQTKKYNDKLQDILDKEKEVKDEEAKEKEEKAEEKDKKVKQQEENE KKQKEQAAKDKKKRQEAERKK >gi|224999849|gb|ACJC01000151.1| GENE 5 5292 - 9731 4088 1479 aa, chain + ## HITS:1 COG:SA0276 KEGG:ns NR:ns ## COG: SA0276 COG1674 # Protein_GI_number: 15925989 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Staphylococcus aureus N315 # 1 1479 1 1479 1479 2243 75.0 0 MHRLIIEYQNQLKMLNLRNQKTYTISGDKSADITLDNFNDVIHLEQNEQGTWQANHSSIF KGQERKTNDGNVSLYLFDTSNIASFAYPNTRDVITIGPNDYDDIKIAELSNVIMIKNYAE IGQTGYVQFVHNDDSKLYINYELSNDKWSRAYIGDHVFINGIWFEVQSDGLKMMSHETMI SDLIRLNQDTPDAQSDDYNDYHRSPRIIHREPTETIKIEKPPQPIQKNNTAIWRSIVPPL VMIALTVVIFLVRPIGVYIIMMIGMSIVTVIFGITTYFSEKKKYKEEVEKREKDYKKYLS DKSSDINNAIKDQRFSLNFHYPTLSEIKDIVENKAPRIYEKTSHHHDFLHYKLGIANIEK SFKLDYQEDEFVQRRDELFDDAKELYEFYQEVEKAPLINDLTHGPIAYIGARHLIIEELE KMTLQLVTFHSYHDVEMLYVIREDERDTFNWARWLPHMTLSALNIRGFVYNQRTRDQILT SVYSMIKERIQTVREKSKSNEKIVFTPHLVFVITDMSLIIDHVILEYVNQDLSEYGISLV FVEDVIESLPEHVETIIDIKSRTEGELIMKEEELVQLKFTPENIDGIDKEYIARRIANLN HIEHMKNAIPDSITFLQMYDVNEVHELDVVNRWQQNETYKTMAVPLGVRGKDDVLSLNLH EKAHGPHGLIAGTTGSGKSEIIQSYILSLAVNFHPHEVAFLLIDYKGGGMANLFKDLKHL VGTITNLDGDEAMRALTSIKAELRKRQRLFGEYDVNHINQYHKLFKEGIATEPMPHLYII SDEFAELKSEQPDFMKELVSTARIGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKVQ DRQDSNEILKTPDAADITLPGRAYLQVGNNEIYELFQSAWSGATYDIEGESLDNEDKTIY MINDYGQLQPINKDLSGLDDEEPTETQTELEAVIDHIEDITERLNIPDIKRPWLPPLPEI VYQSELIETDFNKLWTDQPKEVELTLGLKDVPEDQYQGPMTLKLKQAGHIALIGSPGYGR TNFLHNVIFDVARHYRPDQAHMYLFDFGTNGLMPVSDVPHVADYFTVDQEDKIAKAIKQI HQIISERKKLLSQERVINIDQYNKETGKTVPNVFIIIDNYDTVKESPFVEDYEEMMAKVT REGLALGVYIILTGSRSSAVKSSIFTNIKTRIALYLFENNELTNIIGSYKKGVKDIKGRA AINDDNFTQFQIAQPFEVKEGQTYNSCIKDEIAQMNEHYVGEYPAHIPMMPDTIIYEDYR DSLDFETMINNKVLPIGLDYEKVEVQTIDLTEPAMLSSENPREIENIAKIMLKEIETIKQ HYAVCISDPSGEFSNYSHLADNYASEKEDIKAVYQLMKEDLSQREDEGKFEKDSLYIIND AKSFINYTFIDEETMKKLLTRGPALGFNIIFVGMHKELIDAYDKQLDIARKIINQFSMGI RITDQQFFKFSFIHREPVMKENESYIVKNQTYQRMRWFK >gi|224999849|gb|ACJC01000151.1| GENE 6 9745 - 10137 520 130 aa, chain + ## HITS:1 COG:no KEGG:SaurJH9_0272 NR:ns ## KEGG: SaurJH9_0272 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: not_defined # 1 130 1 130 130 99 56.0 3e-20 MEFGDIESIVKSKFKDIKKHAEEIASEIAERTVYLRKANKYNKLANNLEACVKAVDANLD AMNSAKSSSTKDRVSIKNKAPNTLYIEKRDQMKKQLEILTDSTKDNKDNLKKAKEKAEEK AKEYYNKAFH >gi|224999849|gb|ACJC01000151.1| GENE 7 10158 - 10472 464 104 aa, chain + ## HITS:1 COG:no KEGG:SaurJH9_0273 NR:ns ## KEGG: SaurJH9_0273 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: not_defined # 1 102 1 102 104 114 62.0 8e-25 MGSINGIKADADKVEQAKKLAKQVVDDLEDCQKKTQALAEYIGGSDWDGEFANKVKDVLQ IIAEFQNKLNKPLSDHQTALENLSENLDKYDTLAIKEALEKVEI >gi|224999849|gb|ACJC01000151.1| GENE 8 10472 - 11149 561 225 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_00266 NR:ns ## KEGG: SAOUHSC_00266 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 220 1 220 224 300 69.0 4e-80 MTEYNRIDYFSYEELSLLGGTDLPLINFEMFQPSDFKEAKDSLEEKLLITKDGELTDTGF KIATLVREYISAIVNIRINDMYFAPFSLEENEFILISRFKNNGFQIRIIANDIAWWSIID QYPILMREESSDDWDFRSVDDETLAYLNNQSIDTINRLLEIEIYNHETTQKHYIYNIYEQ NEMLFIRYPLKEQIFNVHVGVINTFILELFGLDKDSLQTNVGGVN >gi|224999849|gb|ACJC01000151.1| GENE 9 11150 - 11458 472 102 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_00267 NR:ns ## KEGG: SAOUHSC_00267 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 102 3 105 105 128 67.0 7e-29 MADKISVKAETIAHVVKEIENINQKYEGMSKTFDKIASLNYYSSNKSADAMSAYEDCSAV IKSLEGPLSTLGGAIMNSAQKFFEADDHWGSEFAKLYYNIEG >gi|224999849|gb|ACJC01000151.1| GENE 10 11468 - 13321 1509 617 aa, chain + ## HITS:1 COG:SA0281 KEGG:ns NR:ns ## COG: SA0281 COG5444 # Protein_GI_number: 15925994 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 616 1 613 614 697 64.0 0 MSKDIHYKTNDYNQESSTIQSINNILKGKDFKDVDKIMEDAQDDINSLDEDGVISLTHAP VGHKGAKLMGYYQDELYEYAKNLDAKMKEIIDTPFVDDLEKAIDGVSNVKLKNILIKNGG GKGNDTYGASGKIAKEGAKKGDSDVYSIDEILKSDKSFQKVIDQNYERMHKENKELKKSD FETYVTKGSSFDYVTNKEKAKIKEQQKTETAVDIAATVGIVALTIVNPVAGAVAAGAYTA YSVANAATGKNVITGRKMSKNERLMEGLLAIPLPGASFLKSTGKSMSKLAFTGSKNLAVK TGMHEGMQNMASRMTPKMTAMKDSVLNQSKNFTQNNRVGQMLSNMRGQASNTVQQGKQWI GHQAQQVKQATNHILEKEIPFTQPRVAVAGVGSVQAGKGVTLKEAGQSIQRTFSSNHQVT HTPKNSMVKSEGKHVSSSQSHGSNSVHYQEDPNLTKVEYGDHYERRFMKPKKLKANIEYT TPHGHVYRTDHKGRIKEVYADDLSLLDGGRNSYAQRTVGREDRLPDDDGGHLIARAFGGS KDIDNLVPQSKYINRSFKENGEWYNMEKEWRKAIDKGKNVKNIKIKVKYEGQSQRPSGFS VLYEIGSARHSRYIHNI >gi|224999849|gb|ACJC01000151.1| GENE 11 13333 - 13827 494 164 aa, chain + ## HITS:1 COG:BS_yeeF KEGG:ns NR:ns ## COG: BS_yeeF COG5444 # Protein_GI_number: 16077749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 6 149 676 819 827 86 32.0 2e-17 MIFEEQVSKFYNEIANEVSGMIPDSWQNIYFKIYINDEGSEAFFFFTKNNDNKIYYSGDI PELYNVSSDIYIDLLIEVQEKFRKLRAIFKKENQEPWTSCEFDFTNKGKLNVSFGYIDWK KSDLGQVARFNYYRYKKFGIPPEFEYEREEIKEIEQFIKEQEEE >gi|224999849|gb|ACJC01000151.1| GENE 12 13975 - 14373 169 132 aa, chain + ## HITS:1 COG:SA0281 KEGG:ns NR:ns ## COG: SA0281 COG5444 # Protein_GI_number: 15925994 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 131 483 613 614 202 78.0 1e-52 MYRTDHKGRIKEVYADDLSLLDGGRNSYAQRTVGREDRLPDDDGGHLIARAFGGSKDIDN LVPQSKYINRSFKEKGDWYKLEKGWQKAIKEGKEVKNIKIEVQYRGDSQRPTQFKVKYEI NNEKDIKSIKNI >gi|224999849|gb|ACJC01000151.1| GENE 13 14385 - 14879 601 164 aa, chain + ## HITS:1 COG:BS_yeeF KEGG:ns NR:ns ## COG: BS_yeeF COG5444 # Protein_GI_number: 16077749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 7 149 677 819 827 99 35.0 2e-21 MGFEENLNKMYQEIANKINEMIPAEWEQVYTKAYIDDEGGEVLFYYTKPGNNDLHYYTNI PRDYNVSEKIFSDLWDDLFGLFDKLRESFKGDNQEPWTSCEFDFNNEGKLNVAFAYIDWK NSEFDPMARKNYYKYKKFGIVPEYEYEREEIKEIEQFIKEQEEK >gi|224999849|gb|ACJC01000151.1| GENE 14 15436 - 15705 184 89 aa, chain + ## HITS:1 COG:no KEGG:SAR0294 NR:ns ## KEGG: SAR0294 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 44 1 44 166 66 75.0 3e-10 MEFEEKLNEMYQQIASKINEMIPVEWERVYTMAYIDDQAGEVFLISSNPTVTTYITILVF QMITMFLKEYLMNYQTNFTKILIDSESYL >gi|224999849|gb|ACJC01000151.1| GENE 15 15768 - 15929 156 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243589|ref|ZP_04798033.1| ## NR: gi|242243589|ref|ZP_04798033.1| conserved hypothetical protein [Staphylococcus epidermidis W23144] # 1 53 124 176 176 71 86.0 2e-11 MSFDYIDWKNSEFGQLARERYYEYKKFGMIPEYEDEREEIKDIEQFIKEQKEK >gi|224999849|gb|ACJC01000151.1| GENE 16 16842 - 17255 203 137 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243574|ref|ZP_04798018.1| ## NR: gi|242243574|ref|ZP_04798018.1| hypothetical protein HMPREF0791_2099 [Staphylococcus epidermidis W23144] # 1 137 21 157 157 238 100.0 8e-62 MSVLLMFAPMIADIMNNRLQYGRDFMDRVALYSYVSIMSVYVITILLEIIFYFKLLKNYQ YDQTNVELANRVKVTKVLSILYMIPGLYAIPFYFRFLHVRSFRKNKKSGQPAYHFWDAFI RPDRKPFELKDFFVKNR >gi|224999849|gb|ACJC01000151.1| GENE 17 17269 - 17643 377 124 aa, chain + ## HITS:1 COG:no KEGG:SLGD_01979 NR:ns ## KEGG: SLGD_01979 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 124 1 139 139 111 50.0 6e-24 MKKLCIGVLIIMMSIINSSCSHDQKENRYQSQINKVMEIQQETHKEMVKKSDQVAPKFNK DKVNTYVFEDGKLIVVSYKLFKDKDQLFYATYEFKDDKIYYKRDIDPKTYVKNHHPDYED IKVK >gi|224999849|gb|ACJC01000151.1| GENE 18 17665 - 18054 403 129 aa, chain + ## HITS:1 COG:no KEGG:SAS0281 NR:ns ## KEGG: SAS0281 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MSSA476 # Pathway: not_defined # 1 129 1 129 132 90 44.0 1e-17 MEKLIKVTSLIGVIIQSFLTLLFLLFLILSATGIIQPDLTTTVNGKETVQSPETAQATFV TVFAIFFVISLVADLLGIFAMKKLFVNNKMSGILHIVGAVISANLLTFIAWLISGISILR YNKTQKEVS >gi|224999849|gb|ACJC01000151.1| GENE 19 18056 - 18448 399 130 aa, chain + ## HITS:1 COG:no KEGG:SLGD_01977 NR:ns ## KEGG: SLGD_01977 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 4 130 138 264 269 125 55.0 4e-28 MKYTWWILLIVAGVLSLISVYGFILSVGSFGMLALNIMWLFVYTPHKNSKALESVSKPTI NLSIIGTYAVIVLMSFLFYFVMKADFMEIGIKLYGETFNVFGLLLFIIGIILFTIGTWFV YQIQQSRLRQ >gi|224999849|gb|ACJC01000151.1| GENE 20 18511 - 19197 326 228 aa, chain + ## HITS:1 COG:no KEGG:SLGD_01954 NR:ns ## KEGG: SLGD_01954 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 14 227 1 216 217 125 38.0 1e-27 MYKKAIRNKGANKLEESLKKLRKPSVQVMNVLSLLMILAGVVQYFYSLTIERTPFYLIIT TLIEIIIIFFGFIQLFEKKDNIELKTARRYLIIGCLTGYSTYLSFYNSYFFMAEEHHIHL TTFWVVGFLFLLICASAHICKLLLMADKLPWLKGNKYVWIMVLSVIASTIYVQKIVEYIL IPNVAESHFVIIVSMLMIFVANSLATQYFLLYGEVYMAIENKSKQESI >gi|224999849|gb|ACJC01000151.1| GENE 21 19197 - 19382 126 61 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243579|ref|ZP_04798023.1| ## NR: gi|242243579|ref|ZP_04798023.1| hypothetical protein HMPREF0791_2104 [Staphylococcus epidermidis W23144] # 1 61 1 61 61 97 100.0 3e-19 MELDVLIMPHIAKMEFSIYPDYWKDEMNRIKAFFISLEVSFVVLSIKNMMKLKALNYYKF Q >gi|224999849|gb|ACJC01000151.1| GENE 22 19726 - 19908 65 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243581|ref|ZP_04798025.1| ## NR: gi|242243581|ref|ZP_04798025.1| hypothetical protein HMPREF0791_2106 [Staphylococcus epidermidis W23144] # 1 60 1 60 60 98 100.0 1e-19 MKQATNHILEKEIPLTQPKVAIAGAGSAQVGKGVTLREASQNIQRTFTPNHQVTHQKIVW >gi|224999849|gb|ACJC01000151.1| GENE 23 19902 - 20309 360 135 aa, chain + ## HITS:1 COG:no KEGG:BC3301 NR:ns ## KEGG: BC3301 # Name: not_defined # Def: putative cytoplasmic protein # Organism: B.cereus # Pathway: not_defined # 28 134 99 209 212 107 53.0 2e-22 MVKSEGNQIKASVNKSKNYSKEKPKNSPNKWLKKGGEIKVDENGTWIYTNKDGIKVAYRN GYPDFKGAGLVEQEVDINSFDNYYTDFKKADKLAERKKRIENTWHHHEDGKTMQEVKKIH REFTHRGGTSLKRKN >gi|224999849|gb|ACJC01000151.1| GENE 24 20330 - 20527 259 65 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243583|ref|ZP_04798027.1| ## NR: gi|242243583|ref|ZP_04798027.1| hypothetical protein HMPREF0791_2108 [Staphylococcus epidermidis W23144] # 1 65 1 65 65 111 100.0 2e-23 MEFKKFGEMSKEKIKWLEQKYRVTFPNDYKQFLLGNNGGFFNIENMNKVPVDELNDNIYE SVIWM >gi|224999849|gb|ACJC01000151.1| GENE 25 20505 - 20774 288 89 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242243584|ref|ZP_04798028.1| ## NR: gi|242243584|ref|ZP_04798028.1| hypothetical protein HMPREF0791_2109 [Staphylococcus epidermidis W23144] # 1 89 1 89 89 156 100.0 5e-37 MKVLYGCDTPYDVTNIEYWMDEYESELIEESIIIGNDLSQGFLVLILLEGYEGVYFWDDG HNFESSNDEENTYFIAETFTNFLKKIQYK >gi|224999849|gb|ACJC01000151.1| GENE 26 20956 - 21255 118 99 aa, chain + ## HITS:1 COG:SA0281 KEGG:ns NR:ns ## COG: SA0281 COG5444 # Protein_GI_number: 15925994 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 92 440 529 614 130 71.0 6e-31 MHRIKIANYQEAPNFTKVKYGDHYERGFINRKKLKANIEYTTPHGHVYRTDHKGRIKEVY AYDLSLLDGGRNSYAQRTVGRDRLPDDDGGHLKRTEIGI >gi|224999849|gb|ACJC01000151.1| GENE 27 21252 - 21413 109 53 aa, chain + ## HITS:1 COG:SA0281 KEGG:ns NR:ns ## COG: SA0281 COG5444 # Protein_GI_number: 15925994 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 52 563 613 614 58 56.0 2e-09 MMESEWQKAIKKGREVKNIKIEVQYRGDSQRPTEFQVIYEINNKKHENYIENI >gi|224999849|gb|ACJC01000151.1| GENE 28 21424 - 21918 574 164 aa, chain + ## HITS:1 COG:BS_yeeF KEGG:ns NR:ns ## COG: BS_yeeF COG5444 # Protein_GI_number: 16077749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 6 145 676 815 827 99 37.0 4e-21 MEFEEKLNEMYQEIANKINEMIPVEWDKVYTKAYIKEESKEVFFYYTLPGSDELHYYTAI PKEHNVSKKLFKELLDELYENFESLRELFIENNQEPWTSCEFDFTKEGKLNVSFDYIDWK NSDFGPLAREYYYEYKKFGILPEKEYAINKVKKVEQYIKEQEKE >gi|224999849|gb|ACJC01000151.1| GENE 29 21944 - 22474 605 176 aa, chain + ## HITS:1 COG:BS_yeeF KEGG:ns NR:ns ## COG: BS_yeeF COG5444 # Protein_GI_number: 16077749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 5 161 667 819 827 97 33.0 1e-20 MRDILGIFRSKKKGFEEKLNEMYQEIANKINEMIPAEWEQVYTKAYIDDEGGEVLFYYTK PGDNDLHYYTNIPRDYNVSEKIFSDLRGDLFGLFDKLRESFKGDNQEPWTSCEFDFTNKG KLNVAFAYIDWKNSEFGPMARKNYYKYKKFGMTPEFEDEREEIKKIEQYIKEQEEE >gi|224999849|gb|ACJC01000151.1| GENE 30 22501 - 23031 567 176 aa, chain + ## HITS:1 COG:BS_yeeF KEGG:ns NR:ns ## COG: BS_yeeF COG5444 # Protein_GI_number: 16077749 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 18 161 676 819 827 99 37.0 2e-21 MRDIFGIFRNKKKGFEEKLNEMYQEIANKINEMIPVEWERVYTMAYIDDQGGEVFFNFIQ PDSNDIHYYTSIPDDYNVSERIFDELSDELYENFDRLRELFIENNQEPWTSCEFDFTNEG KLNVAFAYIDWKNSEFGPLARERYYEYKKFGMIPEYEDEREEIKEIEQFIKEQEEE >gi|224999849|gb|ACJC01000151.1| GENE 31 23455 - 23739 304 94 aa, chain - ## HITS:1 COG:SAP015_2 KEGG:ns NR:ns ## COG: SAP015_2 COG1961 # Protein_GI_number: 16119215 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 77 85 161 165 110 71.0 9e-25 MVSEQERNESKRRQAQCIKVAKDKGLYKGHSLLYSPNCKDSQKRIIYHRVVEMLEEGQAI SKIAKEVNLTRLTVYRITILFWFYKLFFNASQNK >gi|224999849|gb|ACJC01000151.1| GENE 32 24181 - 24957 355 258 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243592|ref|ZP_04798036.1| ## NR: gi|242243592|ref|ZP_04798036.1| hypothetical protein HMPREF0791_2117 [Staphylococcus epidermidis W23144] # 1 258 1 258 258 443 100.0 1e-123 MNIIEGENRIIGILKFISPKYSKDFENDYLYFNSLKTFQKIEHEDIGDELEGVISDKWGD RNSSEDSIEMYFQRLDDPCAQINKVNLKEVIFKNTPNINKDFKICCFSIIRESDLVKMDD GIYRLSQKFINEINRILDNRNIYITIDFEHFKNRLLKYFSENDIFFKGDIVEYFNEKHPL FYKIENKEELTFEDIVKVSFCKSNKYANQKEYRILAYKLKGNKIKINGLYNEFFQLKGLE QLAIKFYTEEEYKDMLSD >gi|224999849|gb|ACJC01000151.1| GENE 33 26362 - 27681 1270 439 aa, chain + ## HITS:1 COG:mlr6307 KEGG:ns NR:ns ## COG: mlr6307 COG4195 # Protein_GI_number: 13475274 # Func_class: R General function prediction only # Function: Phage-related replication protein # Organism: Mesorhizobium loti # 231 393 9 175 206 97 39.0 5e-20 MKVKSISRFFSMKKVTLSFVTVFIGVGTIGSFNQYADASTKTQQTHVTKTSPTQKTTSNF KRSVKDTVVKSRATSTKRAISPKTSSTKKTTIAKKSTTLNKTRTTTKTQPTIRKSSTTST RSKTMPTSVKRTTSHKATTVSPTSKAKISTKTQQSTKSHTTSVKKNTTQLSKTKSPSVST KSKTVQSSTTKAQPTLTTQVSKTTKAKQLSTSPTSKISSSKELVGVAPAERKTDKYQSMT QLEKETTEGVDWRKDTKNTGNQVLIVAPHGGSIEQGTTELTKALADKGNYDYYSFEGIRP KNNSELHVTSTHYDDPTLNQMIKNRTATVSIHGASGTEEIIYLGGPRSDLRNAIEKQLVG RGFTVKVPPEYLGGQNNKNFINREDNNTGVQLELTTALRKVFFKNGDTSTKNRTNKENWT PTMEAFINALYEGINQTYS >gi|224999849|gb|ACJC01000151.1| GENE 34 28387 - 30720 1681 777 aa, chain + ## HITS:1 COG:BS_tagF_2 KEGG:ns NR:ns ## COG: BS_tagF_2 COG1887 # Protein_GI_number: 16080625 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Bacillus subtilis # 400 761 16 384 387 143 29.0 2e-33 MKINIFGYNIFAKGGTSRSNINLVKSLLEIGHEVHYFNYKNYNKSDITKLIIYEGLSTKH LHIHQFNSGKELAHGDLLIITRETFFHYAYLVKKLNSKIKIVGEIHGPLEYINENIDLAL DCIDCVRVSTARIKNEFIAKYDYHRVFNQYVNAQHIDLKSEPINTKRNFLIKARFEDEVK DISYIIKLFNYIIKNQIVDDAQLYLIGYGPSEMLYKNLINYYHLNDYIHINEKEPQSYIY ISSSPYETLGYSILETIAQGNKALVYYGDDNVLKDIYAPYEAIRFLTKDMIKDSKIIKDF LDYKYSHCDRQKDYRQLESTFKCINYGQEFLNHVETFSSSQHVKVKKIHQHLVSEKQIDI ASRLKESRWMNLIRKNKYLFNKCKTYYEKRKHMSYIKNLNQIPVDDDSIFIESFHGKNFS GDPKYIALAIKRQYAHKKIYVSSTNSLVDMEIKRYGFTPVRFGSEKYIKTFRKCKYVFIN GNSWDKVYKSSDQIFIQTWHGFPLKKMVNDLNEQHERQQQLDAFIPRMKKWDYILTSSDI NTTLLESAFMLNKNPNLKVLEYGAPKNEYLINNNNLQERQQLQLKYMYKIDDDKKYILYC PTWRGNQRKEVTQINLKDLLKYLPENYEIIVKLHPNESHLRTRYNQIDNRIHCYFNELVD IQELYILSECMITDYSSTIFDYIHLNKPVFILQEDEQQYKQSVGFYFDLFEVGDFLKASL NERMLAKQICSTDYINYSKVVHRLMKQDSSKSSEKLMTKILGEPEYPRSSICKQQIS >gi|224999849|gb|ACJC01000151.1| GENE 35 30911 - 32455 1279 514 aa, chain + ## HITS:1 COG:VNG2488C KEGG:ns NR:ns ## COG: VNG2488C COG0702 # Protein_GI_number: 15791253 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Halobacterium sp. NRC-1 # 4 298 3 293 300 171 34.0 3e-42 MSKILLTGASGYIGSHLKNKLKKDHEVIAISRKTHNKTDEENVTWKSADLFDLDEITKVM KDVDTAIYLVHSMMPSAKLTQASFEDMDVLLADNFARAAQKQGVKHIVYMSGLIPENDEL SAHLRSRLECEKILGDYGIPVSTLRAGLIIGAKGSSYPILKRLVERLPAMVLPSWAYNKI APVAIDDVIDGLAALVNRTPKDNEAIDITGPEVMNYKTLIQRTANVLDKRLPMLDLPIIP IIVSRYWVQLISNVPKEMVYPLMNSLIHDMVPHRKRVVSNLSVGNITFEDSVRRALREEQ KTSKKKSDSKNSQSFGRMHQEIKDVRAITRFKIPESYSIKDVTKEYAKFINNITLHFVKG TINEREFNMYLPFINKCILKMERDEADSTEDMVVYNIVGGDLAHSNDGGNARFEFRRIRN TNDGIIALQEYEPTLPWVVYKLTQAKAHKTVMNIFKNKMARLAQQKNVKDEKNMSNRVTI GVTVASTFVIGSAVGFQLFKKYQIKKSTMSNAEL >gi|224999849|gb|ACJC01000151.1| GENE 36 32579 - 34048 1688 489 aa, chain - ## HITS:1 COG:SA2420 KEGG:ns NR:ns ## COG: SA2420 COG1785 # Protein_GI_number: 15928213 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Staphylococcus aureus N315 # 1 480 1 473 474 540 66.0 1e-153 MKFMNKMGKTTLASSIVAASVLSTVNVSYASGSSEQGAQTKQTQNEAIAFGNTKNPKNVI FMVGDGMGPSFNTAYRYYKNKPGAKKMTPTAFDKYLKGTNRTYSNDPKENVTDSAAGGTA FSTGHKTYNGAISVDTNKKPIKSVLEQAKEQGKSTGLVTTAELTDATPAVYAAHIDSRDK KDEIAQQFYNDKINGKHKVDVMLGGGAKYFGKENKNLAKKFKKDGYDIVSNKDELNQSQS KQVLGTFSEKDMPLQIDAPQSNPLLVDMQNSALNKLSKNNKGFFLMVEGASIDKAAHPND ITGVMSEMSGFETAFDNAINYAKTHKDTLVVATADHSTGGLSTAKGKDYKWNPEAIHKMK NSGMYMTKQIADGKDPEKVIKDGYGIDFPNKQLDKVKKAADDLHKLQKEGKDDKDEKVVE QTTKLQNAIQKPINDASHTGWTTNGHTGVDVNTYAYGPGSNKFKGNMENTQNAKNIFDFF GNNVTSNQN >gi|224999849|gb|ACJC01000151.1| GENE 37 34345 - 34524 233 59 aa, chain + ## HITS:1 COG:no KEGG:SE2196 NR:ns ## KEGG: SE2196 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 59 1 59 59 73 94.0 2e-12 MIFVMLSPILIILFIVLSVLEEKRRKKNSKEQNSNHVEQQQHDYIDKEQQQNINSDDDK >gi|224999849|gb|ACJC01000151.1| GENE 38 34555 - 35220 423 221 aa, chain + ## HITS:1 COG:SA2418 KEGG:ns NR:ns ## COG: SA2418 COG0745 # Protein_GI_number: 15928211 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 221 1 221 221 331 78.0 6e-91 MKIFIVEDDLVIAESLANELSKWNYEVHVIDNFEKIMEDFRRVEPQLVLLDINLPTLNGF HWCQEIRKVSRVPIMFISSRTDNMDQILAIQMGGDDFIEKPFNLSLTVAKIQALLRRTYD LSIARDEIAVKGCKLIVDEAKLSKDNEHVQLSLTELQILKLLFQNENKYVSRTALIEKCW ESENFIDDNTLAVNMTRLRKKLLSIGVDNLIETKKNVGYRV >gi|224999849|gb|ACJC01000151.1| GENE 39 35226 - 36122 743 298 aa, chain + ## HITS:1 COG:SA2417 KEGG:ns NR:ns ## COG: SA2417 COG0642 # Protein_GI_number: 15928210 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 5 297 3 295 295 333 60.0 2e-91 MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLNFK KNEHLKDKVAYLEHELAHVKNQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVV NRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDLIRPLILKYRIQFIEQKTQIH YEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNHGTVFFIHFTKEK >gi|224999849|gb|ACJC01000151.1| GENE 40 36173 - 36982 182 269 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 21 260 7 249 563 74 25 1e-12 MLLAFFLFYDVVEREKGVCIVLLEVKNVKKVYGRGMNTTMALNQMNLEIDENEFVAIMGE SGSGKSTLLNLIATFDRTTEGLIKLDGLPLNQLKHKDIARFRREMMGFVFQDFNVLNTMS NKDNILMPLVLANERPKIMQKRLTEISEQLGIEDLLEKYPSEISGGQRQRIAIARALIAR PKLLLADEPTGALDSKTSKNLMCLFRKINQKHQTILMVTHSNIDASYANRVIFIKDGRLY HEIYRGEESQTDYQKRIADNLAILNGVGD >gi|224999849|gb|ACJC01000151.1| GENE 41 36984 - 38996 1263 670 aa, chain + ## HITS:1 COG:SA2415 KEGG:ns NR:ns ## COG: SA2415 COG0577 # Protein_GI_number: 15928208 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 667 1 662 666 395 35.0 1e-109 MTFKILWKMIKQNFVNQRHIIVPFISVISILFGIEYILLSLTTNMYFNEHHPELKISAMI GIVFMTMLLFIFLIYANHFVMNRRKKEFALNMVLGMEKKHLRLIILIELLIQFIISAILS IVGGYLFGELFFMLFNKLVNTHQPQLSDYPFDVLSMKITLTMLFSLMIILFVINNFKISF KNSLQLLLKNKSKTHEKSRVLLIIFLILGLIFIGMGYYLAIKPNTAIGSLGIIFFAILST LIGTYLLFVSLGSIVLEMLQKLDHYYYKPNHFFFIAGLKSRVKSSAIGLATISFMCTFLI VTLSMTVSTYRNMDHRFEFAFKNDYAGYYIGDFHKNSKIQRKIENLKKDIRQEVPTGQFK IYARGMVGAELQGGLKHKKLKRQTVSSGLFNFGNKRKFNSFISIYNKSDYNKNNKKIKLN DDEIAISTSVSLFKKMKTLNIFGKTYRVKYIESTNMDNLLYADGITLIVNQQQLMDRIVN EYRNHNDENLIITPNQVQTAVEFNVLKEKDKLNHRIKKIGVQHDIEFQVKKQNLLMWKQV NSSLVFVGSVVSLVLLIGIFLMMYYKQVSEGHEDRDAYITMKQLGLDENLIKKTINKQVI WVFLIPVIVAIIHTLAAFRIIYSVLGIVGQYDLGLYATSYVGVIVVFIIFYSMMYWITSR IYYTMINGKH >gi|224999849|gb|ACJC01000151.1| GENE 42 39100 - 39690 718 196 aa, chain + ## HITS:1 COG:no KEGG:SERP2202 NR:ns ## KEGG: SERP2202 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 196 1 196 196 331 95.0 7e-90 MIQRKGELILSWIGNGLHLLYVFLIGIFFIMTQTSDFKNGMIQGFIEENPGEYDLAYQTY NIMLGLGVVLIIILLILLIVSIVAAILIGKNAKVSGILLVITGIIGLFLSFMAGVLWLIA GIMLLVRKPQTHNDQINSQYSNDIHSHVVPEEKKREQQQYNMNEPHIGQPSTSHHDHALN DQNKRENHNHDNQPYK >gi|224999849|gb|ACJC01000151.1| GENE 43 40212 - 40391 192 59 aa, chain + ## HITS:1 COG:no KEGG:SERP2201 NR:ns ## KEGG: SERP2201 # Name: not_defined # Def: putative symporter YidK # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 59 1 59 530 103 98.0 1e-21 MNWISIILFIMVVGGISFYAYLQSRKIKTNSSDGYFMGGNSLTGFTVASTIIMTNLSTE >gi|224999849|gb|ACJC01000151.1| GENE 44 40437 - 41201 785 254 aa, chain + ## HITS:1 COG:BH2222 KEGG:ns NR:ns ## COG: BH2222 COG4146 # Protein_GI_number: 15614785 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Bacillus halodurans # 1 253 76 327 580 207 49.0 2e-53 MAWEVTAAVAVVLLAWVFLPKYLKYGVNTISEFLELRYDTFTKRFVSILFIFTYVVSFLP VVLYSGFLVFNKMFKVDEYLGVSSSTAVIIISSIIGIIGIIYLFVGGLSLSAFSDSIYGM ALIIGGLAITILGLGQLGDGNFQHGFDKIVQDTPEKLNGFGKVDSDVVPWPTLFFGMFFN NLFFWCANQMIVQKALAAKNLKESQKGAIYLSLFKVFGPLFTVLPGVVAFNYFNGSLDKS DNAYPALVTSVLPE >gi|224999849|gb|ACJC01000151.1| GENE 45 41241 - 41804 349 187 aa, chain + ## HITS:1 COG:BH2222 KEGG:ns NR:ns ## COG: BH2222 COG4146 # Protein_GI_number: 15614785 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Bacillus halodurans # 1 187 343 529 580 126 38.0 2e-29 MSSFVGSLNSTTTLLTLDFYQPIFGKNKSDKHIARVGHIATVVIGVIVVALAPVISLFPS GLYAVVQQFNGVYSMPVLALILVAFFSKRTSKLGAKVTLFTHIILYAIISFVFTEINYLY TFSVLFFVDLIIILIFNKVKPSSEFDLNTHQPKVDMTPWKYRYVAGIIVLALVVVSYIIF SPLVLAK >gi|224999849|gb|ACJC01000151.1| GENE 46 41934 - 43118 1000 394 aa, chain + ## HITS:1 COG:no KEGG:SE2189 NR:ns ## KEGG: SE2189 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 394 1 394 394 710 97.0 0 MQTVGIIPSPGIAHQHAKNIIPNVKQLLSKRTKHNRWNFEIKVDLMIGSAEDVHESVEKA AQIKEAHQWDYVVCLTDLPSISDNKVVVSDFNSDKHVAMLSLPSLGFIDLKRKLVKTMTS LIEQLYYNQPKNKNAPHPFVRVKAVEPDEDATSKQRYINILFIISWIQLIGGLTRANQPW KNIFNFKKIISVAFATGTYVSIFSMPWELSVIYSPLRLIILMVIAILGMAGWLFYAHQLI EKKTAKSQRVYRYIYNSTTLVTLSLITLINYVILYLLLIISITLFVPVELFNSWTSAQAQ FTFSNYMRLIWFVSSLGLLAGAMGSTVENEEKIRRITYSYRQYHRYKKAEQEQKEQETSR DVSQQNVEQQTSSKDGNNEQYEGKKQGHREEDDA >gi|224999849|gb|ACJC01000151.1| GENE 47 43115 - 44224 1065 369 aa, chain + ## HITS:1 COG:no KEGG:SE2188 NR:ns ## KEGG: SE2188 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 369 1 369 369 694 98.0 0 MTNQKTVGLVVAPGVTEHLAENLIQEMPKMLSTHYDYQQEWIFDLVTDPLTGFAESVDEI FEKVADYHDKRQWDYVIAITDLPMFADKQVMALDINMENGAAIFSYPAFGWRPVKKRFKH AIYNIIQELNEAEQESRNYDNNNQIENSVKKQFPLSKIDKETIYMKETDSYHLRYLSSSR SRGMFRLVSGMTFANNPLNMMASLSNIVAIAFTTGAFGLVFTTMWQMAYNFSMWRLFGIS IIAIIGMLIWIMMSHDLWEPVNKSNHKRITWLYNLTTIMTLIFAIIIYYIILYLLFLISE IVLLPSGFLGQQVGLKGPAGIDLYLSIPWFAASISTVAGAIGAGLLNDELIKESTYGYRQ RIRYEEQRR >gi|224999849|gb|ACJC01000151.1| GENE 48 44368 - 45693 861 441 aa, chain + ## HITS:1 COG:SA0228 KEGG:ns NR:ns ## COG: SA0228 COG2339 # Protein_GI_number: 15925939 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 67 441 6 377 380 440 59.0 1e-123 MICSNCGAHLEKDDKFCVNCGQSVFDNPKTKTEHFFSSQERQCPKCHKVVNVDDKFCINC GHFLQQTLSNANDNIGSHTYSNTKPEIENETADRIRLTEEAKHLFNNTTKSIGRLAGNDE SLKLNLRDMFSEVFKSHTKDEADDVFIAGTKRTTPHINEVSEEWGRPWVFSRVFLALGIT FLALWVLTNVFGNANAIPGMIFIGALLVPISGLIFFFESNAFKNISIFDVMRMFFIGGVL SLISTMILYQFVTFSTESQYYGIMTITDAFIVGFVEEVGKATVVILFINYLKTNKILNGL LIGAAVGAGFVVFESAGYIFRFGFNLVDGVNNITEITIQRGWTALGGHLVWAAIVGAAAV IVKETNHFEWANIIDKRFIFFFFVAVTLHGIWDTEITLLSSGYLKYILLIIIAWLFIFIL MKAGLTQVNQLREEYNRLEER >gi|224999849|gb|ACJC01000151.1| GENE 49 45699 - 46448 794 249 aa, chain + ## HITS:1 COG:no KEGG:SERP2197 NR:ns ## KEGG: SERP2197 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 249 1 249 249 441 96.0 1e-122 MKFCPHCGNPVKKEQSFCNKCGKHLQTSTQRKSENQIEHMREQQSYISREERQDHDSTFY KGQKHTGWLIVLSIIFVLLIAALLYGAYYAYNHYISDEQSHQTTQSQQSNESNQNRNQST GPSIDVFSNDFDQGYMKSASTSGYRGVYNGMTREEVEDKFGTSNGSVESLKWSYETYGDL AVAYDDNEVVSVGVAPNHISEDQFLSMYNEPDDRNSSQLIYDSNKDNDFSVLVNVKNGDV TVIENVNQI >gi|224999849|gb|ACJC01000151.1| GENE 50 46611 - 47108 366 165 aa, chain + ## HITS:1 COG:SMc00098 KEGG:ns NR:ns ## COG: SMc00098 COG1846 # Protein_GI_number: 15964714 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Sinorhizobium meliloti # 23 129 14 120 158 110 47.0 1e-24 MCESFYTIINRARLKRGEYVKQEQMRLANQLCFSAYNVSRLFAQFYEKKLKQFGITYSQY LVLLTLWEENPQTLNSIGRHLDLSSNTLTPLLKRLEQSGWVKRERQQSDKRQLIITLTDN GQQQQEAVFEAISSCLPQEFDTTEYDETKYVFEELEKTLKHLIEK >gi|224999849|gb|ACJC01000151.1| GENE 51 47125 - 48468 460 447 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 445 1 451 458 181 28 8e-45 MKQYDVVFLGSGHAAWHAALTLKQSGKQVAIVEKDTIAGTCTNYGCNAKILLEGPYEVLE EAKQYPNIIDSHNLEVNWKNLMRYKEQVINPMSETLTSMFEQQGIDVIMGKGKIVDAHTI EVNNTTLQSDYIVIATGQHSHQLDIEGKEYTHDSREFLSMQSLPNSITFIGAGIISIEFA SIMVKSGVEVNVIHHTNQALEGFNESHVNKLIQKLKDEGVKFYFSENTKSVRPNAQRFIV ETESGKMIETDYVLDATGRKPNVEQIGLEKVGIQFSDRGIEVDDYLRTNVKNIYASGDVI DKMIPKLTPTATFESNYIAAHILGLNTEAIQYPPIPSVLYSLPRLSQIGVTVSEAKKDDT YIIKDIPFGRQMVFEYQNETEAEMSIVLDSQKRLVGAEIYGNDAGDLVNLLVFIINQKLT AHDLNQNIFAFPGASSGVIDLLKLAMM >gi|224999849|gb|ACJC01000151.1| GENE 52 48481 - 48957 474 158 aa, chain + ## HITS:1 COG:SA2414 KEGG:ns NR:ns ## COG: SA2414 COG0386 # Protein_GI_number: 15928207 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Staphylococcus aureus N315 # 2 158 5 161 165 177 52.0 7e-45 MSIYDIAVENYDGSTYLLKKYKGKVLIIVNTATNCTLNDQFNKLEMLYKKYHKYGLEILS FPCNDFNNQEPGLIKDIYRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQPGLFGSQ IKWNFTKFVVDQQGNIVKRFLPCDNPNQMEELIRQLLK >gi|224999849|gb|ACJC01000151.1| GENE 53 49272 - 50003 776 243 aa, chain + ## HITS:1 COG:BS_cysH KEGG:ns NR:ns ## COG: BS_cysH COG0175 # Protein_GI_number: 16078621 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Bacillus subtilis # 6 238 2 232 233 301 59.0 7e-82 MSIERITYDNFQNDPFINELDINDETKGAYEILKWAYQTYENDIVYSCSFGAESMVLIDL ISQIKPDAQIVFLDTDLHFQETYDLIDRVKDKYPQLRIKMKKPELTLEEQGEKYNPALWK NDPNQCCYIRKIKPLEDVLSGAVAWISGLRRAQSPTRAHTNFINKDERFKSIKVCPLIYW TEEEVWSYIRDKDLPYNELHDQNYPSIGCIPCTSPVFDSNDSRAGRWSNSSKTECGLHVA DKP >gi|224999849|gb|ACJC01000151.1| GENE 54 50259 - 52145 1730 628 aa, chain + ## HITS:1 COG:SA2413 KEGG:ns NR:ns ## COG: SA2413 COG0369 # Protein_GI_number: 15928206 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, alpha subunit (flavoprotein) # Organism: Staphylococcus aureus N315 # 15 628 1 626 626 802 64.0 0 MTNIGITKYKRWIRLNLSVTNSPFTEGQAKQINELLHTLSPNQQVWLSGYLMANQQSNTS TDSVEQHNLDDNTEAMLHEKEPSVEPEARSITILYGSESGNAQGLAEIFEQRLSDIGNDV TLKSMDDFKPKNLKKVEDLFIITSTHGEGDPPDNAVELHEYIHGRKAPKLDGVRFSVLAL GDQTYEFFCQTGKDFDNRLAELGAERLYHRTDCDVDYEEDAEKWMANVINTIDSTPAGTE SEQVVSESIKSAKEKKYSKSNPYDAEVLTNINLNGRGSDKETRHIELLLDNFGEEYEPGD CVVVLPQNNPAIVDLLISTLGWSPETQVLINEDGDTLNLEEALTSHFEITKLTKPLIENA AIFFDNEELSEKIQDKEWIQNYVEGRDLIDLLNDFATTELQPENLHQLLRKLPPREYSIS SSYKATPDEVHITVGAVRYQAHGRERSGVCSVQFAERIQEGDTIPIYLKRNPNFKFPQDE STPVIMIGPGTGVAPFRSYMQEREELGFEGNTWLFFGDQHFTTDFLYQTEWQEWLEDGTL SKLDIAFSRDTDKKVYVQHKIAENSEQFNRWIENGATIYVCGDESKMAKDVHQAIKNVLI KEQNLSETDAEEYLKQMKRNKRYQRDVY >gi|224999849|gb|ACJC01000151.1| GENE 55 52165 - 53883 1812 572 aa, chain + ## HITS:1 COG:BS_yvgQ KEGG:ns NR:ns ## COG: BS_yvgQ COG0155 # Protein_GI_number: 16080396 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Bacillus subtilis # 13 571 10 570 571 787 64.0 0 MVNTNNHISEELDKNLDEMEFLKANSDFLRGTIEQSLANPITGSITQDDAKLLKFHGSYM QDDRDLRDERRKQKLEPAYSFMIRVRVPGGKATPEQWIAMDDISNQYANHTIKLTTRQAF QFHGILKRNLKQSMKNINHAVLDSIAACGDVNRNTMCNPNPYQSQVHKEINDYATRISNH LLPRTNAYHEIWLDGEKVLDSSEEKEPIYGNTYLPRKFKIGIAVPPSNDIDVYSQDIGLI AIVEQDELIGFNVTIGGGMGMTHGNTETYPQLGRLIGFIPKEKVVDVCEKILTIQRDYGN RENRKNARFKYTVDRLGETWVTEELNRRLGWEIKAPRDFEFEHNGDRLGWIEGVNNWNFT LFIQNGRVKDTEDYLLKTALREIAEIHTGDFRLSPNQNLVIANVSPEKKEEIQAIINKYK LTDGKNYTGLRRNSMACVAFPTCGLAMAESERYLPSLITKIEDLLDESGLREEEITIRMT GCPNGCARPALAEIAFIGKAPGKYNMYLGGSFKGERLNKIYKENIDENEILESLRPLLLR YSKERLDGEHFGDFVIRAGVIAKVHDGRDFHS >gi|224999849|gb|ACJC01000151.1| GENE 56 53905 - 54684 771 259 aa, chain + ## HITS:1 COG:BS_ylnD KEGG:ns NR:ns ## COG: BS_ylnD COG0007 # Protein_GI_number: 16078625 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Bacillus subtilis # 1 255 1 255 257 271 55.0 7e-73 MGKVYLVGAGPGDPELITLKGLKAIKEADVILYDRLVNKEILNYASPSTKFFYCGKDPHR HSLPQEETNKMMVTLAKKGHTVTRLKGGDPFVFGRGGEEAEELACHNIHFEIIPGITSGI AAPAYAGIPVTHRDYSSSVAFVTAVNKPGMDKGKYWQHLANGPETLCIYMGVKRLSEICE LLIQYGRSSETPVALVHMGTSKQQMTVTGTLDTIQERAHHIQNPAMIIVGEVVKMREKIN WFVEQATVQNETLTEMSST >gi|224999849|gb|ACJC01000151.1| GENE 57 54772 - 55383 600 203 aa, chain + ## HITS:1 COG:SA2412 KEGG:ns NR:ns ## COG: SA2412 COG1648 # Protein_GI_number: 15928205 # Func_class: H Coenzyme transport and metabolism # Function: Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) # Organism: Staphylococcus aureus N315 # 1 198 1 198 201 185 54.0 6e-47 MNMPLMIDLSNKKVVIVGGGKVATRRTTSLLAYTNHIHVVSPTITDTLQKYLETKQITYE KKLFEPQDVENADMVIAATNQSDVNNDVGAALSKNVLFNHAGQADLGNITFPNFLKRDKL TISVSTDGASPKLGQRIIKDLKDTYNEDYSMYIQFLYECRQYIKSLKIEPSDKQALLEQI LSDKYLDEKKQQYFIRWLKSQVK >gi|224999849|gb|ACJC01000151.1| GENE 58 55404 - 56303 850 299 aa, chain + ## HITS:1 COG:BS_ytnM KEGG:ns NR:ns ## COG: BS_ytnM COG0730 # Protein_GI_number: 16079980 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Bacillus subtilis # 1 260 1 260 300 234 48.0 2e-61 MRKVLIFAIAGFLAQLVDGSLGMGFGASSSSILLTYGIAPAVVSATVHFSEIATTAASGT SHWRFDNVHKPTMLKLAIPGSISAFIGAGVLTFIHGDYIKPFIALFLLSMGFYILYQFLF KRAHEHHHHVGDLSSFKVIPQGFVAGFLDAIGGGGWGPVNTPLLLSSKKIQPRYAIGTVS ASEFFVTSSAALSFIIFLGITQINWFAVIALSLGGMVAAPISAYLVKVLPINILAICVGG LIIFTNSNALLSYFVKDSTISNTVRFIIILAIIILLVFQVVRNKKLSFSYKKSRVNKYN >gi|224999849|gb|ACJC01000151.1| GENE 59 56327 - 57505 1526 392 aa, chain + ## HITS:1 COG:BH1487 KEGG:ns NR:ns ## COG: BH1487 COG2046 # Protein_GI_number: 15614050 # Func_class: P Inorganic ion transport and metabolism # Function: ATP sulfurylase (sulfate adenylyltransferase) # Organism: Bacillus halodurans # 13 392 5 378 381 486 62.0 1e-137 MSNNETITNYTIKPHGGELINRVVEGNERERLIEEALKFKPITLNPWGISDLELIGIGGF SPLTGFMNKEDYTKVIEETHLSNGLVWSIPITLPVTESEADKLDIGDDIALYGEDGQLYG TLKLEEKYTYDKEKEARLVYGTTEEAHPGVKKVYEKGNIYLGGPIKLLNRPKHDAFSNYH LDPSETRQLFHDLGWKTVVGFQTRNPVHRAHEYIQKSALEIVDGLLLNPLVGETKSDDIP ADVRMESYEVILKNYYPEDRARLVIYPAAMRYAGPREAILHATVRKNYGCTHFIVGRDHA GVGDYYGTYEAQELITQFEDELGIQILKFEHAFYCEACGNMATAKTCPHDASQHLHLSGT KVREKLRNGESLPTKFSRPEVAEVLIKGLREK >gi|224999849|gb|ACJC01000151.1| GENE 60 57521 - 58120 735 199 aa, chain + ## HITS:1 COG:BH1489 KEGG:ns NR:ns ## COG: BH1489 COG0529 # Protein_GI_number: 15614052 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Bacillus halodurans # 2 197 4 199 202 265 64.0 3e-71 MSESNHITWHDSEVTKKQRQHRNGHKSAVIWFTGLSGSGKSTVSVALEKELFNEGKQTYR LDGDNVRHGLNKNLGFSPEDRSENIRRIGEVAKLMVDAGALTVTAFISPYKEDREGVRAL LEDNEFIEVYTKCSVEECEKRDPKGLYKKARSGEIPEFTGISAPYQAPENPEITIDTEHD TIEQSVEQIIRYLKEHQYI >gi|224999849|gb|ACJC01000151.1| GENE 61 58472 - 58777 500 101 aa, chain + ## HITS:1 COG:no KEGG:SERP2184 NR:ns ## KEGG: SERP2184 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 101 1 101 101 147 92.0 1e-34 MAFNIWMWILLVLFIVGTIAVILILTVGSVLEERSYDRRSEDEKRKNLEKNLEMSKGHTD ELQESSNREEQVAQEHSRHVVRDHQQTHQNINQSTQDNKNN >gi|224999849|gb|ACJC01000151.1| GENE 62 59095 - 60945 1946 616 aa, chain + ## HITS:1 COG:SA2410 KEGG:ns NR:ns ## COG: SA2410 COG1328 # Protein_GI_number: 15928203 # Func_class: F Nucleotide transport and metabolism # Function: Oxygen-sensitive ribonucleoside-triphosphate reductase # Organism: Staphylococcus aureus N315 # 1 615 1 615 616 1078 81.0 0 MTTLETSLTRLITKDPTILNENANKDSNTFSTMRDLTAGTVSKSYALDHLLPKHVAHAHQ SGDIHFHDLDYHPFQPLTNCCLIDAKDMLENGFEIGNANVTTPQSIQTASAQLVQIIANV SSSQYGGCTVDRVDELLSKYAQMNAQHHREVANDFVQPDKIENYVDTQVTKDIGDAIESL EYEINTLYTSNGQTPFVTLGFGLGTDQLSRKIQQAILHTRIKGLGKDKVTAIFPKLVFSI KKGINFGPEDPNYDIKQLALECSTKRMYPDILNYDKLVELLGDFKAPMGCRSFLPSWKND EGQLENNGRCNLGVVTLNVPRIAIEADGDMQQFWDIFEKRMQLLHDALVYRIERLQDAIP DNAPILYKSGAFKNKLTSEDTVESLFTNQRATISMGYIGLYEAATLFYGPNWEHNPAAKT FTLDILREMKRYQVEWTKQYDIWFSIYSTPSESLTDRFCRLDKDKFGSIPDVTDKGYYQN SFHYDVRKDVTPFEKLDFEKDYPYYASGGFIHYCEYPKLNHNLKALEAVWDYAYDKVGYL GTNIPIDHCYRCGYDGDFETTANGYKCPHCGNNDPKTVDVVKRTCGYLGNPVQRPVIEGR QKEICARVKHMKEPRS >gi|224999849|gb|ACJC01000151.1| GENE 63 60942 - 61478 402 178 aa, chain + ## HITS:1 COG:SA2409 KEGG:ns NR:ns ## COG: SA2409 COG0602 # Protein_GI_number: 15928202 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Staphylococcus aureus N315 # 1 176 1 176 178 268 69.0 5e-72 MNILNIKEGQHYIAKIESHSFVDGEGVRCSVYVSGCPFQCKGCYNVQAQNFKYGEPFELE MLEEILDYCAPSYIEGLSILGGEPFCNLSITLQLVEAFRQRFGHTKTIWVWTGFLFEYLK QQNDARKSLLEHIDVLVDGMFIQHLYRPNLPYKGSLNQRVIDVQASLQKEQVIEYLTK >gi|224999849|gb|ACJC01000151.1| GENE 64 61841 - 63139 1234 432 aa, chain + ## HITS:1 COG:ECs5119 KEGG:ns NR:ns ## COG: ECs5119 COG2704 # Protein_GI_number: 15834373 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 3 430 1 432 433 174 29.0 3e-43 MLLFIIEIIIMILAILLGLRTAGALGCGIFAIVAQLIMIFGFQLPPGSAPVTAVLIILSI GIAGGTLQATGGIDYLVYIASRVIERFPKSIIFIAPMIVFVFVFGIGTANIALSLEPIIA KTAQKARIQPKRALTASVLTANLALLCSPAASATAYIISVLAGYEISMGKYLSIVLPTAL ISMLMLSTFCTFVGRKEHVRDESERLVQMPEVEIKNDFSLKVKIGVISFLLCVMGILTFG IFPNLMPQFNVNGDVVKVEMTEIVQFFMYLSATINLLLIKINTSDILSSNITQSAMGALF AVLGPGWLGATIFNAPHNLKILKNDIGSIISEVPWLVIILVSVVAMIVISQTATASIMVS IVMSLGIPPIYFVAMVQTLNVNFVIPAQPTLLFAVELDETGRTRPTSFMIPGFFVITVSV ITGFVIKTILGY >gi|224999849|gb|ACJC01000151.1| GENE 65 63579 - 65183 1484 534 aa, chain + ## HITS:1 COG:SA2408 KEGG:ns NR:ns ## COG: SA2408 COG1292 # Protein_GI_number: 15928201 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Staphylococcus aureus N315 # 1 534 7 540 540 937 90.0 0 MDWTTFIGVVIVLLFAVIPMMVFPKASEIIITDINSAISNSIGSVYLFMGLAIFCFVLYI AFGKYGNVTLGKATDKPEFNNFTWAAMLFCAGIGSDILYWGVIEWAFYYQVPPNGAKSMS DQALQYATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKKPVYKISQACRPILKGHTDKLL GKIVDILFIFGLLGGAATSLALGVPMISAGIERLTGLDGSNMILRSIILLTITVIFAISS YTGLKKGIQKLSDVNVWLSFLLLAFVFIVGPTVFIMETTVTGFGNMIKDFFHMATWMEPF GGIKGRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRTLKEVVLGTICYGTLGCVL FFGIFGNYAVYLQISEQFNVISYLNNHGTEATIIEVMHQLPFSTITIILFLISAFLFLAT TFDSGSYILAAASQKKVIGEPLRANRLFWAFALCLLPFSLMLVGGERALEVLKTASLLAS VPLIVIFTLMMISFLIILGRDRIKLERRADKHKEIERRSLRIVQVKDKPEDDNL >gi|224999849|gb|ACJC01000151.1| GENE 66 65233 - 65793 554 186 aa, chain - ## HITS:1 COG:SA2407 KEGG:ns NR:ns ## COG: SA2407 COG1510 # Protein_GI_number: 15928200 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 181 2 182 188 234 73.0 1e-61 MDYNNNDSQHIEEAKDLVINSIGETMDLYGINRSVGNLYGIMVFEGSMTLDEMRQQLQMS KPSMSTGVKKLQEYDIVKQQFTRGSRKQHFIAEKDFFTFFRNFFTKKWEREIDTNMEAIK DAENIIYPILEKNDIDEEVKNQAINVKAQLDHSKIYYKWLAQLSEALESGEIFNYFPIPD EQHHHD >gi|224999849|gb|ACJC01000151.1| GENE 67 66274 - 67764 2019 496 aa, chain + ## HITS:1 COG:SA2406 KEGG:ns NR:ns ## COG: SA2406 COG1012 # Protein_GI_number: 15928199 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 496 1 496 496 905 89.0 0 MELVDKLSNRQYIDGEWVESSNKNTRDIINPYNQETIFTVAEGTKEDVERAILAARRSFE DGEWSLETSEVRGKKVRAVADKIKKNREELAKLETLDTGKTLEESYADMDDIHNVFMYFA GLADKDGGEMINSPIPNTESKIVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK PSEITPLTTIRVFELMEEVGFPKGTINLVLGAGSEVGDVMSGHEEVDLVSFTGGIETGKH IMKQAANHVTDVALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVHND IKDKFEKALIDRVSKIKLGNGFDQDTEMGPVISTAHRDKIEGYMKVAKKDGATIAIGGKR PEREDLQAGLFFEPTVITDCDTSMRIVQEEVFGPVVTVEGFADEEEAIRLANDSIYGLAG AVFTKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLVSK HILTNTNPEPVDWFSK >gi|224999849|gb|ACJC01000151.1| GENE 68 67924 - 69642 1968 572 aa, chain + ## HITS:1 COG:SA2405 KEGG:ns NR:ns ## COG: SA2405 COG2303 # Protein_GI_number: 15928198 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Staphylococcus aureus N315 # 1 569 1 567 569 1048 88.0 0 MRRKRDSYDYVIIGGGSAGSVLGARLSEDKDKNVLVLEAGRSDYFWDLFIQMPAALMFPS GNRFYDWEYQTDEEPHMGRRVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMDTW DFAHCLPYFKKLETTYGAAPYDKVRGHDGPIKLKRGPATNPLFKSFFNAGVEAGYHKTAD VNGYRQEGFGPFDSQVHHGRRMSASRAYLRPALRRRNLDVETRAFVTKLIFDENNSKKVT GVTFKKNGKEHTVHANEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGENF EDHLEVYIQHKCKQPVSLQPSLDVKRMPFIGLQWIFARKGAAASNHFEGGGFVRSNDDVD YPNLMFHFLPIAVRYDGQKAPVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIVFNYLS TKEDEREWVEAIRVARNILKQKAMDPFNGGEISPGPQVQTDEEILDWVRKDGETALHPSC SAKMGPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRG RKPLEPQYVDYYKHGIDDEKAGAMEDDPFYQY >gi|224999849|gb|ACJC01000151.1| GENE 69 70485 - 70703 133 72 aa, chain + ## HITS:1 COG:no KEGG:SERP2174 NR:ns ## KEGG: SERP2174 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 72 1 72 72 137 98.0 1e-31 MSFYHFIQNFVGDETPLGKLAAWINQDEDFPMEETTAHNILNYFNQLNYFDDDCIETVKR SLSLYEQSKVAL >gi|224999849|gb|ACJC01000151.1| GENE 70 70731 - 71177 289 148 aa, chain + ## HITS:1 COG:SA2403 KEGG:ns NR:ns ## COG: SA2403 COG2329 # Protein_GI_number: 15928196 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Staphylococcus aureus N315 # 1 146 1 146 147 179 60.0 1e-45 MLVSDTNKTYIIEETRNSFIIERNNNQQHYEVLESINSLSNDTFCVLNHLFVNEGNEEVF ESRFLKRNQHLQDVPGFKALRFLRPVVKGRHYIIITLWNSRQAFYDWQNSKAYAQTHKKR GTQKGVDHRIVNKDLSYNIRIELESLNN >gi|224999849|gb|ACJC01000151.1| GENE 71 71519 - 73099 1571 526 aa, chain + ## HITS:1 COG:SA2402 KEGG:ns NR:ns ## COG: SA2402 COG0365 # Protein_GI_number: 15928195 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Staphylococcus aureus N315 # 1 526 8 533 539 872 77.0 0 MNKSNLLAPEKYNIVSEIEKYASEDHKKAIIYKDNEHENISVSYKELISNANKVGNVFLN HGLKKGDKVLIMMPRAIVTYELYIAALKLGIAIVPSSEMLRTKDLQYRITHGEIDAVISF DSLTKEFENVKEYDQLKKFIVAGHKEDWVSIEDEKEKVSDDLKGADTTRDDLAILSYTSG TTGNPKAVTHSHGWGYAHLQMAPKHWLCIQENDLVWATAAPGWQKWVWSPFLSVLGMGAT AFVYNGRFHPETYLELLQNYQINVLCCTPTEYRMMAKLSHLEQYNLEHLHSAVSAGEPLN REVVEQFKRHFNITVRDGYGQTESTLLIGFLKDTEPRMGSMGKGIPGSFVTVIDDDGKEV GPNVKGNIAVPLDLPALFKGYFKDEARTKAASTGDYYVTGDQAHIDNDGYFWFEGRRDDI IISSGYTIGPFEVEDALTNHAAVKECAVVASPHDIRGNIVKAFIILQDDYEASDELIQEL QVFCKNEVAPYKYPRAIEFVENLPKTNSGKIRRVELRDAEIKKYKQ >gi|224999849|gb|ACJC01000151.1| GENE 72 73462 - 76089 2750 875 aa, chain + ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 1 859 1 859 879 941 54.0 0 MTQFVYAFNEGNIAMKDLLGGKGANLSEMKRLGLPVPDGFTITTEACITYLKQNEELPTE VKTQLIDHLAAFSKRTGKAFSSDDNLLLVSVRSGAKISMPGMMDTILNLGLNDDNVKKLV DKTNDARFAYDCYRRLLQMFGEVVYGIPMTAFDTYFNDFKTKHRYQNDAEIPAEGLQTIC ERYKEIYVEEAYKPFPQEPLKQLEEAIEAVFKSWDNDRARVYRDLNDIPHDIGTAVNIQE MVFGNSGANSGTGVAFTRNPVTGENHLFGEYLLNAQGEDVVAGIRTPKDIDTLKQQMPDV HQEFVDVTKQLEKHYKDMQDIEFTIENGKLYLLQTRNGKRTAKAAIKIAVDLVHEQLITR EEAVSKVEVKSIDQLLHPNFNEESLKQATVVSKMGLPASPGAATGKVVFSAEEAKLQAEN GNKVVLMRPETSPEDIEGMVASEAIVTTHGGMTSHAAVVARGMGKCCVTGCSNVEIDTVN KTVYYPEGELHEGDIVSVDGSAGDLYLGAIETVNAEHSEEFDQFMTWSEEIARLQVRMNA ETPQDIKAGYNFGSKGIGLVRTEHMFFGPERLIEMRRFILASNHDERVQALEKIKTYQVE DFETIFRLSQDRPTIVRLLDPPLHEFLPSSEEDINNVSQQLNVSSEFLRKRIVDLNEVNP MLGHRGCRLAVTYPELYEMQVEAIIESVIKLQKEGITCLPEIMIPLVSTVEEFTTLKERL VNTITHLEKESQQDIQYMIGTMIETPRACLIANDLAKHCDFFSFGTNDLTQLTFGFSRDD AGKFINVYTENNILQLDPFQTLDREGVGRLIQLAVEQAKNTNPEIKIGVCGELGGDAKSI RQFNQWGIDYVSCSPFRVPGAILATAQSQAEESER >gi|224999849|gb|ACJC01000151.1| GENE 73 76160 - 76909 841 249 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 1 248 24 270 270 190 40.0 2e-48 MIHATLTQFPDLTQVEIKKFPYIKDEQEFLNVLQLAKEQNAIVATTLVSESFNALGHQFA NEHQIPYVDYMSELISIIKKHTHAKPLMESGALRKLNDEYFKRIEAIEYSVKYDDGKHFT DIGEADALIVGVSRTSKTPLSMYLANKGYKIANIPLVPEVAIPDNVFQQKNLKVFGLTAS PNYIANIRRNRAETLGLSSESNYNSLERIKKELSYAEEVFRKLNATVINTEYKSIEESAF YIEKFLAKR >gi|224999849|gb|ACJC01000151.1| GENE 74 77118 - 78617 1795 499 aa, chain + ## HITS:1 COG:SA2400 KEGG:ns NR:ns ## COG: SA2400 COG0579 # Protein_GI_number: 15928193 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Staphylococcus aureus N315 # 1 495 1 496 498 888 86.0 0 MAMSDKKDVVLIGAGVLSTTFGSMLKTIAPDWDIHLYERLDRPGIESSNERNNAGTGHAA LCELNYTVQQPDGSIDIEKAKEINEQFEISKQFWGHLVKSGEIQNPKEFINPLPHISFVR GKNNVKFLKDRYEAMKQFPMFDNIEYTEDIEEMRKWIPLMMKGREDKGYMAASKIDEGTD VNYGELTRKMAQNLKNSPNVEVQYKHEVVDFERLSNGKWSVKIKNLNNGQVFEHQTDYVF IGAGGGAIPLLQKTGIPESKHLGGFPISGQFIACTNPQVIEQHDAKVYGKEPPGTPPMTV PHLDTRYIDGERTLLFGPFANVGPKFLKHGSNLDLFKSIKPYNITTLLASAVKNLPLIKY SFDQVIMTKEGCMNHLRTFYPEARDEDWQVYTAGKRVQVIKDTEENGKGFIQFGTEVVNS EDHSVIALLGESPGASTSVSVALEVLEKNFPEYAKDWEPKIKKMIPSYGESLIDDVQLMR KIRKQTSKDLELGFYNKAK >gi|224999849|gb|ACJC01000151.1| GENE 75 79011 - 79460 474 149 aa, chain + ## HITS:1 COG:no KEGG:SE2157 NR:ns ## KEGG: SE2157 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 140 1 140 307 186 98.0 3e-46 MKKFLGILLIVMSIALVGCSNSNDSDQSSNEKSSSKSSEKKTDVATEYTKEDEYKELEKE AKDLKQKPVLNEIDALITEKGFTNKTGLQGWEDYKKLMDKVTLADYKYTKESKGSSIEEV NKFFKDKKGVEIKRMKSKEKILSISIICM >gi|224999849|gb|ACJC01000151.1| GENE 76 79451 - 79933 652 160 aa, chain + ## HITS:1 COG:no KEGG:SERP2167 NR:ns ## KEGG: SERP2167 # Name: not_defined # Def: putative lipoprotein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 160 148 307 307 279 98.0 2e-74 MYVDPDGKKTGKNKQPMSYAQILATFKEGKLVATNIQPGFFALDKKKMVKAKDLEEVKTL EDLTRLKNPKATSYGILQTKYKGKPYTQVSILGSDSDEENDISSAILAYYLFSPTELDSD DNHKYVEVASAPFLSAQNDFSSYQLGVFKKIIESSMSFDE >gi|224999849|gb|ACJC01000151.1| GENE 77 80066 - 80956 1245 296 aa, chain - ## HITS:1 COG:SA2399 KEGG:ns NR:ns ## COG: SA2399 COG3588 # Protein_GI_number: 15928192 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 1 296 1 296 296 495 93.0 1e-140 MNKEQLEKMTHGKGFIAALDQSGGSTPKALKEYGVNEDQYSNEDEMFQLVHDMRTRVVTS PSFSPDKILGAILFEQTMDREVEGKYTGDYLADKGVVPFLKVDKGLAEEKNGVQLMKPID DLDETLDRANERHIFGTKMRSNILELNEQGIKDVVEQQFEFAKKIIAKGLVPIIEPEVNI NAKDKSEIEKVLKAEIKKGLDSLNDDQLVMLKLTIPTEANLYKELADHPNVVRVVVLSGG YSRDEANELLKDNDELIASFSRALASDLRASQSQEEFDKALGDAVDSIYDASVNKN >gi|224999849|gb|ACJC01000151.1| GENE 78 81270 - 81683 499 137 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 5 137 322 454 454 159 55.0 1e-39 MTMPRVSGTSGLQLFDYKFGQTGIHGTEIDNYDGNLGQTYVEELIRPQFMQDDTKIHMKI IYDKDTHRILGGQVMSKEDITASINTISVVISAGFTLEQLAVQDFFFQPDYDRPWHYLNV LAQQALGDTFGSDKMLF Prediction of potential genes in microbial genomes Time: Sun May 29 08:06:23 2011 Seq name: gi|224999848|gb|ACJC01000152.1| Staphylococcus epidermidis W23144 contig00196, whole genome shotgun sequence Length of sequence - 18141 bp Number of predicted genes - 17, with homology - 17 Number of transcription units - 11, operones - 4 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 3 - 62 9.2 1 1 Tu 1 . + CDS 112 - 990 944 ## SE2151 hypothetical protein + Term 998 - 1057 20.1 - Term 986 - 1044 8.7 2 2 Tu 1 . - CDS 1094 - 1525 317 ## SE2150 hypothetical protein - Prom 1662 - 1721 5.9 + Prom 1410 - 1469 7.2 3 3 Op 1 . + CDS 1627 - 1833 125 ## SE2149 hypothetical protein 4 3 Op 2 . + CDS 1830 - 3167 1463 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases + Term 3217 - 3279 15.2 5 4 Tu 1 . - CDS 3295 - 4725 1635 ## COG0531 Amino acid transporters - Prom 4858 - 4917 7.3 6 5 Tu 1 1/0.750 + CDS 5291 - 6172 889 ## COG0583 Transcriptional regulator + Term 6405 - 6444 4.3 + Prom 6884 - 6943 5.5 7 6 Op 1 . + CDS 7005 - 7955 1366 ## COG0039 Malate/lactate dehydrogenases 8 6 Op 2 3/0.000 + CDS 8018 - 9682 2034 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 9721 - 9768 4.2 9 6 Op 3 . + CDS 9794 - 10498 1011 ## COG3527 Alpha-acetolactate decarboxylase + Term 10616 - 10670 10.2 - Term 10725 - 10764 0.5 10 7 Tu 1 . - CDS 10896 - 11765 702 ## COG1893 Ketopantoate reductase - Prom 11790 - 11849 5.9 + Prom 11753 - 11812 5.6 11 8 Op 1 19/0.000 + CDS 11868 - 12659 1005 ## COG0413 Ketopantoate hydroxymethyltransferase 12 8 Op 2 12/0.000 + CDS 12652 - 13512 860 ## COG0414 Panthothenate synthetase 13 8 Op 3 . + CDS 13496 - 13891 471 ## COG0853 Aspartate 1-decarboxylase + Term 14010 - 14056 6.0 + Prom 14213 - 14272 12.5 14 9 Op 1 . + CDS 14313 - 15323 990 ## SERP2149 hypothetical protein 15 9 Op 2 . + CDS 15327 - 16661 1487 ## COG4640 Predicted membrane protein + Term 16677 - 16716 5.1 + Prom 16732 - 16791 10.1 16 10 Tu 1 . + CDS 16938 - 17654 681 ## COG1636 Uncharacterized protein conserved in bacteria + Term 17666 - 17701 5.1 - Term 17653 - 17688 5.1 17 11 Tu 1 . - CDS 17698 - 17994 266 ## SE2133 hypothetical protein - Prom 18023 - 18082 4.7 Predicted protein(s) >gi|224999848|gb|ACJC01000152.1| GENE 1 112 - 990 944 292 aa, chain + ## HITS:1 COG:no KEGG:SE2151 NR:ns ## KEGG: SE2151 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 292 18 309 309 465 94.0 1e-129 MKKLAVICAFTVLILAGCGLGDSDNKGSSTINDDQQSGDKNNRDSKSSTSRNQTGGNQQD TQQDTHSNKYYAQVWLTALDSYRGDSDLPFDDLEIVHQNISNKVLDPYHPDESAKLPEGT ELLTASVTAAGSVYYKNNGDGTITIYNVPSHFQGSWRDADYSKRESQRIIDDARTVKLYN ASESEINKISQMMRTQFSVGDNLKDEDDTSESENQSSSSDEVTVTRSNVIDIVEDYEGHQ LDTDTYIYKEPEKDSDGSWGFSFTDKEGHLEGSYIIDKDGEVTKYDEDGEPE >gi|224999848|gb|ACJC01000152.1| GENE 2 1094 - 1525 317 143 aa, chain - ## HITS:1 COG:no KEGG:SE2150 NR:ns ## KEGG: SE2150 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 143 1 143 143 154 89.0 7e-37 MNGLKIFYHLLYATTISVLLLILTILMDVLLQNTHLTQLLLNIDFLINPDEVPTIIEVLI HLSIGILIYITFLIIYHYSKFLYRLAYLPLVLIFALMYPLLVFLAQRSIFFFSWNEFAWW LVAHLFFIILMASCLPIISKKTL >gi|224999848|gb|ACJC01000152.1| GENE 3 1627 - 1833 125 68 aa, chain + ## HITS:1 COG:no KEGG:SE2149 NR:ns ## KEGG: SE2149 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 68 1 68 68 74 91.0 9e-13 MTYISLSQKNRNENIFNYQKIFTNLKIVSILITILLVLIYFKTIAVDSFIASNVDSYIKK SHYWEGTQ >gi|224999848|gb|ACJC01000152.1| GENE 4 1830 - 3167 1463 445 aa, chain + ## HITS:1 COG:SA2397 KEGG:ns NR:ns ## COG: SA2397 COG0160 # Protein_GI_number: 15928190 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Staphylococcus aureus N315 # 1 445 13 457 457 788 82.0 0 MSKVSHLIDEDERYFAHSGRIKYYPLVIDHGYGATLIDIEGKSYIDLLASASSQNVGHAP KPVVEAIKNQTEKFIHYTPAYMYHEPLVRLSKKLCDIAPGNYEKRVTFGLSGSDANDGII KFARAYTGRPYIISFTNAYHGSTFGSLSMSSISLNMRKHYGPLLNGFYHIPFPDKYRGMF DQAKPNTVEEYLAPLKEMFAKYVPAEEVACIVVETIQGDGGLLEPVPGYFEALQELCHAH NILIAVDDIQQGLGRTGKWSSVDHYHFTPDLMTFGKSLAGGLPMSAIVGRKEIMESLEAP AHLFTTGANPVSCEAALATIKMIEDEDLLNASWKKGNYVRKRIDPWIERYQYVGDVRGIG LSIGIDIVSNKIEKTRDSEAALKICNYCFENGVIIIAVAGNVLRFQPPLVITYKQLDKAL DTIEQALEKLERGELNQYDISGQGW >gi|224999848|gb|ACJC01000152.1| GENE 5 3295 - 4725 1635 476 aa, chain - ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 475 8 482 482 776 89.0 0 MTRKENPTIYQNKDGHLKRTLRVRDFLALGVGTIVSTSIFTLPGVVAAEHAGPAVSLSFL LAAIVAGLVAFTYAEMASTMPFAGSAYSWINVLFGELFGWVAGWALLAEYFIAVAFVASG FSANLRGLIAPLGISLPKSLSNPFGSNGGVIDIIAAVVIILTALLLSRGMNEAARMENIL VILKVLAIILFVIVGLTAINFSNYIPFIPEHKVTETGDFGGWQGIYAGVSMIFLAYIGFD SIAANSAEAINPQKTMPRGILGSLIVAIVLFVAVALVLVGMFHYSQYADNAEPVGWALRE SGHGIIAAIVQAISVIGMFTALIGMMLAGSRLLYSFGRDGLLPSWLSQLNHKHLPNRALV LLTIIGVVIGSMFPFAFLAQLISAGTLVAFMFVSLAMYRLRKREGKDLPKPEFKLPLYPI LPAITFILVLLVFWGLSFEAKLYTLIWFIVGIIIYLIYGIRHSKKNDEEAYQVPRE >gi|224999848|gb|ACJC01000152.1| GENE 6 5291 - 6172 889 293 aa, chain + ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 289 4 292 295 289 50.0 4e-78 MEIKQIKYFVEVVRQGGMTQASEHLYIAQSTISKAIKNIENEYDITLFDRSQKQIKLTDI GQTFYDNSLEFLALFEKLSLEMNDIVNVQKGHIKIGLSPMMNVQMFTNALNQFHRLYPNV TYEVIEGGGKIVENLTSNDDVDIGITTLPVDHSEFHSTSLYNEELLLVVSNDHHLAHLNK VDMADLKDEEFVLFHDDYYLKDQIIENCKRLGYYPKTVANISQISFIANMIQQGIGISIV PESLVNLMGNNVTSIQLENVELSWHLGVIWRKDAYLNHVTRKWIEFISEMKPT >gi|224999848|gb|ACJC01000152.1| GENE 7 7005 - 7955 1366 316 aa, chain + ## HITS:1 COG:SA2395 KEGG:ns NR:ns ## COG: SA2395 COG0039 # Protein_GI_number: 15928188 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Staphylococcus aureus N315 # 1 316 1 317 319 484 83.0 1e-136 MKKFGKKVVLVGDGSVGSSYAFAMVTQGIADEFVIIDIAKDKVEADVKDLNHGALYSASP VTVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIMKSIVTSVMDSGFDGFFLI AANPVDILTRYVKEVTGLPAERVIGSGTVLDSARFRYLISKELGVTASSVHASIIGEHGD SELAVWSQANVGGISVYDTLKEETGSDAKANEIYINTRDAAYDIIQAKGSTYYGIALALL RISKALLNNENSILTVSSQLNGQYGFKDVYLGLPTLINQNGAVKIYETPLNDNELQLLEK SVKTLEDTYDSIKHLV >gi|224999848|gb|ACJC01000152.1| GENE 8 8018 - 9682 2034 554 aa, chain + ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 1 554 1 554 554 947 87.0 0 MAEKQYSAAQMVIDTLKNNGVEYVFGIPGAKIDYLFNALEDDDLELVVTRHEQNAAMIAQ GIGRLTGKPGVAITTSGPGVSNLTTGLLTATSEGDPVLAIGGQVKRNDLLRLTHQSIDNA SLLRSSTKYSAEVQDPESLSEVITNAMRTATSGKNGASFISIPQDVISSPVKADAISLCQ KPHLGVPSEQEINEVIEAIKNSKFPVLLAGMRSSSQAETEAIRRLVQKTNLPVVETFQGA GVISRELENHFFGRVGLFRNQVGDELLRKSDLVITIGYDPIEYEASNWNKELDTKIINVD EEHAEITNYMQPVKELIGNIASTIDMISEHVNEPFINQDHLDELEKLRGEIIEATGIKAT HKEGVMHPVEIIETMQKVLTDDTTVTVDVGSHYIWMARKYRSYNPRHLLFSNGMQTLGVA LPWAISAALVRPNTQVVSVAGDGGFLFSGQELETAVRKNLNIIQLIWNDGRYNMVEFQEE MKYKRSAGVEFGPVDYVKYAESFGAKGLRVTNQEELEAALKEGYETDGPVLIDIPVNYAD NVKLSTNMLPNALN >gi|224999848|gb|ACJC01000152.1| GENE 9 9794 - 10498 1011 234 aa, chain + ## HITS:1 COG:SA2007 KEGG:ns NR:ns ## COG: SA2007 COG3527 # Protein_GI_number: 15927786 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 382 81.0 1e-106 MTNVLYQHGTLGTLMAGLLEGTASINDLLEHGDLGIATLTGSDGEVIFVDGKAYHANEHK EFIELTGDEMTPYATVTKFKADSSFKTSNKNQEEVFDEVKKQMTSENMFSAVKISGTFKK MHVRMMPGQEPPYTRLIDSARRQPEETRENIKGSIVGFFTPELFHGIGSAGFHIHFANDD RDFGGHILDFEVDDVTVEIQNFETFEQHFPVDAKSFTDADIDYKDIADEIREAE >gi|224999848|gb|ACJC01000152.1| GENE 10 10896 - 11765 702 289 aa, chain - ## HITS:1 COG:SA2393 KEGG:ns NR:ns ## COG: SA2393 COG1893 # Protein_GI_number: 15928186 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Staphylococcus aureus N315 # 1 282 2 283 286 331 57.0 9e-91 MTIAIIGSGAVGTTLAVELKKVLPDTELIGRQNKLMTYFPENTSNGCHIKVTSFNHINHT FDVIIIAVKTHQLDDVIKQLPKITHDNSLIILAQNGYGQLNKLPYQHVFQAVVYISGQKV NNKVQHFRDYQLCIQDSTLTRQFKQMVRPSKIEVVLQENIEKSIWYKLLVNLGINTITAI GHQPAKILKSPHIESICRRILVDGLKVARAEQINFEDHIIDDILNIYNGYPDEMGTSMYY DVINKHPLEVEAIQGYIYKCAKKHHLETPYLDMAYTFLYAYHLENTQPD >gi|224999848|gb|ACJC01000152.1| GENE 11 11868 - 12659 1005 263 aa, chain + ## HITS:1 COG:SA2392 KEGG:ns NR:ns ## COG: SA2392 COG0413 # Protein_GI_number: 15928185 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Staphylococcus aureus N315 # 1 263 10 272 272 388 77.0 1e-108 MKASQQKISMVTAYDYPSAKQAQQAEIDMILVGDSLGMTVLGYDSTVQVTLNDMIHHGKA VKRGAPDTFIVVDMPIGTVGLSDEEDLKNALKLYQNTNANAVKVEGAHLTSFIQKATKMG IPVVSHLGLTPQSVGVMGYKLQGDTKAAAMQLIKDAKAMETAGAVVLVLEAIPSDLAREI SQQLTIPVIGIGAGKDTDGQVLVYHDMLNYGVDRHAKFVKQFADFSSGIDGLRQYNEEVK AGAFPSEKHTYKKRIMDEVEQHD >gi|224999848|gb|ACJC01000152.1| GENE 12 12652 - 13512 860 286 aa, chain + ## HITS:1 COG:SA2391 KEGG:ns NR:ns ## COG: SA2391 COG0414 # Protein_GI_number: 15928184 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Staphylococcus aureus N315 # 1 281 1 281 283 401 70.0 1e-112 MTKVITKINEMQSIVKQYQREGKTIGFVPTMGALHDGHLTMMKQSVNENDLTVISIFVNP LQFGPNEDFDAYPRQLDDDVDAVKKLNVDYVFHPSVDEMYPEELGVHLKVGHLAQVLEGA QRPGHFEGVVTVVNKLFNIVQPDYAYFGKKDAQQLAIVEKMVKDFNLPVHVIGIDIVREK DGLAKSSRNIYLTSEERREAKHLYQSLRLAKNLYEAGERDSNEIISQIAAYLNKNISGHI DDLGIYSYPNLIQQSEIHGRIFISLAVKFSKARLIDNIIIGDDYID >gi|224999848|gb|ACJC01000152.1| GENE 13 13496 - 13891 471 131 aa, chain + ## HITS:1 COG:SA2390 KEGG:ns NR:ns ## COG: SA2390 COG0853 # Protein_GI_number: 15928183 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Staphylococcus aureus N315 # 9 128 2 121 123 177 88.0 5e-45 MTILIRTFMNSKIHRARVTESNLNYVGSITIDANILDAVDILPNEKVAIVNNNNGARFET YVIAGERGSGKMCLNGAASRLVEVGDVIIIMTYAQLNEDEMVNHSPKVAVLNENNEIIEM INEKENTISNV >gi|224999848|gb|ACJC01000152.1| GENE 14 14313 - 15323 990 336 aa, chain + ## HITS:1 COG:no KEGG:SERP2149 NR:ns ## KEGG: SERP2149 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 336 1 336 336 513 98.0 1e-144 MHCPNCGNPIEDDDLFCGECGHKISRHPQSVRNAESEITKAEKNDEEQNITSNNKENNVA THQNVDSTSHDETRSNENDVADSTLQSKQSHNDIQQSNLSTYHQRPQHREIPQNQHNHNQ QQSQIGQQAKQVTNESKGFFKSAFTAPDKIIQTNHVFSFKLLLSLLVIGFIVLAILLASV IPVEIGIFGTTRGSLVTSIIFGIILFLVVIVGAIFGLTRLVVRQPITFKKVLSDYVLINS VSLAILIISVILTLAESYSFGGSIALLSLLLFIASGIYLIAKYSTGNQTRISSFYGVIIY IIILFLFIRIFGEAFFHQIFGDFIEELGDLFEGGTY >gi|224999848|gb|ACJC01000152.1| GENE 15 15327 - 16661 1487 444 aa, chain + ## HITS:1 COG:SA2146 KEGG:ns NR:ns ## COG: SA2146 COG4640 # Protein_GI_number: 15927936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 353 1 353 460 132 28.0 1e-30 MKYCSHCGQPLREGVKVCTNCGTPVRNDGPNYKHSEQRYSHQQPRSNKSNKKTWLIVTIV LAIIIALVVIFTIAKNQMSPEKQATHIAHAIKKDDAKSLSKQLTSNNHRLSEEEARAYLK YIKAENDLKYVADKVEENTKDIKNNHYNNLSVDANGNNILNISKDGKKYVFFDNYQFNVP QKTITLVSSDSGEITYEFNGDKHHISVEEDDDKELGTFPIGDYNLKASKDMEGKNFKGAI TIDMSESDSIAYESFKQKRFNVDTEGGYILDNVKIYANGKEIGDGFSSETYGPYDPDEEV IVHAEGSYEGKTFKSNSVNVAGASEKDGGVTDVTVKFDEEAIDQYVDKKSGEKYDDDADD ESDNDSSSGEVTRENVIDKVESYEGHTLDTDTYTYKEPEKTGDGKWGFSFLDKDGDLAGS YTVDIDDGYVTEYDEDGEEVGSGY >gi|224999848|gb|ACJC01000152.1| GENE 16 16938 - 17654 681 238 aa, chain + ## HITS:1 COG:SA2377 KEGG:ns NR:ns ## COG: SA2377 COG1636 # Protein_GI_number: 15928170 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 238 1 238 240 414 85.0 1e-116 MIEANQILAKMKNQKINYDKVLRKIISQWERDGERPKILLHSCCAPCSTYTLEFLTQYAD IAIYFANPNIHPKSEYLRRAKVQEQFVNDFNNKTGANVKYIEAEYEPHKFMKMAKDKGLT EEPEGGLRCTACFEMRLEIVAKAALEHGYDYFGSAITLSPKKNAQLINELGMDVQNIYNV KYLPSDFKKNKGYERSIEMCNDYNIFRQCYCGCVFAAMKQGIDFKQINKDAQAFLQQF >gi|224999848|gb|ACJC01000152.1| GENE 17 17698 - 17994 266 98 aa, chain - ## HITS:1 COG:no KEGG:SE2133 NR:ns ## KEGG: SE2133 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 98 1 98 98 145 98.0 4e-34 MLLFIGGPIMDKINKEDTDTKKDSNNNYKHQNDHIDRQGLNGYQKTDLDLEIERELQEMM ENGESNKETKSKHFKILSFVSMIVIAVIAIIRFIQKTI Prediction of potential genes in microbial genomes Time: Sun May 29 08:06:42 2011 Seq name: gi|224999847|gb|ACJC01000153.1| Staphylococcus epidermidis W23144 contig00197, whole genome shotgun sequence Length of sequence - 3561 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 984 921 ## COG0167 Dihydroorotate dehydrogenase - Prom 1160 - 1219 7.0 + Prom 957 - 1016 8.1 2 2 Tu 1 . + CDS 1208 - 2065 917 ## COG3001 Fructosamine-3-kinase + Term 2074 - 2122 7.3 + Prom 2130 - 2189 8.6 3 3 Tu 1 . + CDS 2272 - 3559 1117 ## COG1113 Gamma-aminobutyrate permease and related permeases Predicted protein(s) >gi|224999847|gb|ACJC01000153.1| GENE 1 3 - 984 921 327 aa, chain - ## HITS:1 COG:SA2375 KEGG:ns NR:ns ## COG: SA2375 COG0167 # Protein_GI_number: 15928168 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 327 1 327 354 534 77.0 1e-151 MYKLVKPLLFKLDPERAHGLTINALKCVQKCSPILPIVNKLFSYNNPILTQHIHGISFDN PIGLAAGFDKSCEVPKALENIGFGAIELGGITPMPQPGNPKPRMYRLLEDDALINRMGFN NKGMNKALSNLRNHSCSIPVGLNVGVNKSTSYENRYQDYIKVIDTFKNDVSFFTVNISSP NTENLQNFHDEDEFSMLCDALKTFKAKNNINVPIFLKLTSDMELDGFKKILPSITDTFDG AVLANTTRQRDGLNSKNKIQEGGLSGRPLFERNLQLVKYAYQQTQGNFLIIGTGGIFSSE DAIKMLRNGASLLQIYSSLVIEGPGLT >gi|224999847|gb|ACJC01000153.1| GENE 2 1208 - 2065 917 285 aa, chain + ## HITS:1 COG:SA2374 KEGG:ns NR:ns ## COG: SA2374 COG3001 # Protein_GI_number: 15928167 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Staphylococcus aureus N315 # 1 285 1 284 288 426 70.0 1e-119 MNEQWMSALPLDNVKDISPVSGGDVNEAFKVTTVEEDTFFLLVQRQRSEAFYAAEIAGLN EFENAGITAPRVIASGEINGDAYLLLSFLEEGSQGSQRELARLVARMHSQYQQDNKFGFR LPHEGADISFDNSWTETWKEIFIDRRMDHLQDELLRVGLWKQEDKKMYERVRKVIVDELS NHTSKPSLLHGDLWGGNYMFLTNGQPALFDPAPLYGDREFDIGITTVFGGFTQEFYDEYN QQLPLAKGSQKRIEFYRLYLLMIHLLKFGGMYADSVQRSMKIILE >gi|224999847|gb|ACJC01000153.1| GENE 3 2272 - 3559 1117 429 aa, chain + ## HITS:1 COG:SA1519 KEGG:ns NR:ns ## COG: SA1519 COG1113 # Protein_GI_number: 15927274 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 428 1 427 453 508 64.0 1e-144 MADKLQRELSNRHIQLIAIGGAIGTGLFLGAGQSIHLAGPSILLTYIIVGFVLFMFMRAM GELLLSNLGFKSFGDIAHHHIGSMAGFMVGWTYWLTWIISGMAEVTAVAKYVSFWYPTIP NWLTAAATILVLVALNLFSAKLFGELEFWLSIIKVLTILALIAVGVVMIVFGMKTSYGPA TVTNIWKDGGFFPNGAQGFFMSFQMAIFSFIGIELIGITAGETKDPHKTIPQAINNVPFR ILLFYVGSLAVIMSVVPWQQLNPADSPYVKMFGLVGIPFAAGIINFVVLTAAASSCNSGI FANSRTMFGLAGRKQGPAFLHRTNKHGVPYYAILVTCGLLSISVVLNAIFKDATKVFVQI TTFSTVLNIMIWTIIMIAYLGYLRHDSKQHKESNYKMWGGKYMAYSILGFFAFIFIILLI NSATRYAVL Prediction of potential genes in microbial genomes Time: Sun May 29 08:06:44 2011 Seq name: gi|224999846|gb|ACJC01000154.1| Staphylococcus epidermidis W23144 contig00198, whole genome shotgun sequence Length of sequence - 7228 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 170 - 229 8.7 1 1 Tu 1 . + CDS 391 - 1449 1260 ## COG3641 Predicted membrane protein, putative toxin regulator + Term 1459 - 1499 9.2 + Prom 1452 - 1511 5.0 2 2 Tu 1 . + CDS 1550 - 2974 1357 ## COG2326 Uncharacterized conserved protein + Term 2998 - 3044 1.0 + Prom 3548 - 3607 4.0 3 3 Tu 1 . + CDS 3627 - 4334 884 ## SERP2138 immunodominant antigen A, putative + Term 4463 - 4504 8.0 + Prom 4690 - 4749 6.7 4 4 Tu 1 . + CDS 4838 - 6646 1491 ## COG1835 Predicted acyltransferases + Term 6794 - 6852 14.3 Predicted protein(s) >gi|224999846|gb|ACJC01000154.1| GENE 1 391 - 1449 1260 352 aa, chain + ## HITS:1 COG:SA2357 KEGG:ns NR:ns ## COG: SA2357 COG3641 # Protein_GI_number: 15928149 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Staphylococcus aureus N315 # 1 352 1 351 351 423 79.0 1e-118 MSTIKNIDGPKDFIFRVLSGVAIGIVAGLVPNAILGEIFKYFMQYHPIFKTLLGVVQAIQ FTVPALIGALIAMKFNMTPLAIAVVASASYVGSGAAQFKQGTWVITGIGDLINTMLTASI AVLLILLIEERVGSMALIVFPTVVGGLAATIGVFTLPYVRLITTGIGNMVNSFTELQPVF MSMLISMVFSFIIISPLSTVAIAIAIGLSGIAAGSASIGIAATEAVLLIGTSKVNHVGIP LSIFFGGVKMMMPNMVKYPVIMIPIFLTAAISGIASGIIGISGTKESAGFGFIGMVGPIN AFKFMHVDSAWLSLLLIVIAFFVVPFLVAWILDLILRRFIHLYENDIFKFMG >gi|224999846|gb|ACJC01000154.1| GENE 2 1550 - 2974 1357 474 aa, chain + ## HITS:1 COG:MA2391 KEGG:ns NR:ns ## COG: MA2391 COG2326 # Protein_GI_number: 20091222 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 5 468 86 567 569 315 39.0 2e-85 MSGKLEELQLKLARLSRRTHELGIPIMVLFEGIPASGKTRLSNELLLHLDAKYSQFIATK SPESNDLRYQFLQKYWNTLPQKGNINIYFRSWYSHFLDYKENKIKHDQYKNYDVLVNQIY HFESMLKDDNYEIIKFFIEINEEKRNEHIQQTKDNPLTRWKVQEYENVIPQESYLNQMHQ FINKDKDWKVIDYTEREHAFEKMYLHLIDRLEQVIKKVEQQTTKVNGKFTSSFTTSLFDN NLEKVDKKTYKNLIVELQQRMREIQFALYERKIPLVLVFEGMDAAGKGGNIKRIREKLDP TGYEVNGISAPTDVELNHHYLWRFAKKMPKSGHIEIFDRSWYGRVLVERVEGFASQNEWQ RASDEINQFEKMWTDEGTIILKFFLSLDKDEQLKRFKDRENNPDKQWKITEEDWRNREKW DEYLEASQNMIESTNTSYAPWYIVPADHKKTGRIEVLKTIIRKCEEVLWGVKTY >gi|224999846|gb|ACJC01000154.1| GENE 3 3627 - 4334 884 235 aa, chain + ## HITS:1 COG:no KEGG:SERP2138 NR:ns ## KEGG: SERP2138 # Name: not_defined # Def: immunodominant antigen A, putative # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 235 1 235 235 295 98.0 1e-78 MKKTVIASTLAVSLGIAGYGLSGHEAHASETTNVDKAHLVDLAQHNPEELNAKPVQAGAY DIHFVDNGYQYNFTSNGSEWSWSYTVAGSDADYTESSSNQEVSSNAQSSNTNVQAVSAPT SSESRSYSTSTTSYSAPSHNYSSHSSSVRLSNGNTAGSVGSYAAAQMAARTGVSASTWEH IIARESNGQLHARNASGAAGLFQTMPGWGSTGSVNDQINAAYKAYKAQGLSAWGM >gi|224999846|gb|ACJC01000154.1| GENE 4 4838 - 6646 1491 602 aa, chain + ## HITS:1 COG:SA2354 KEGG:ns NR:ns ## COG: SA2354 COG1835 # Protein_GI_number: 15928146 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Staphylococcus aureus N315 # 1 597 1 596 603 773 64.0 0 MNENNYRRLNKTYKPHYLPGLDGLRAIAVIGIIIYHLNTKWLSGGFLGVDTFFVISGYLI TSLLLSEYYRNNSINLVNFWLRRFKRLIPAMMFVVTVVLIYTLLFKPELIISIKHDAIAA LFYVSNWWYIIQDVDYFNQFAVAPLKHLWSLAIEEQFYLFFPFILLGLLKFFKKRTTMII LLIISLLSLTAMITIHMYTGNNSRVYFGTDTRLQTLLLGCLLAFIWPPFSFRKDISKGAK ASISAIGIVGMAVLIYLFVVVSDQDKWIYSGGFYAISFLTLFVIASVVHPSSVLKKILSF KLFIYIGKRSYSLYLWHYPIIIFMNSYFVQGQIPWFVYICEVILMFVMAEVSYKFIETPI RKNGFKAFTVMPKNLTRFSRTIIVLILLVPSALIVFGAYDSLGKEHDKQQAAKQKSFKTN QKAKPKKPDENNQDKSSQQHFNPKEASPLLLGDSVMVDIGQVFSEKVPHANIDGKVGRQL IEGKDLINQKYQDYTKKGQSVVIELGTNGEFTKDQMNELIDSLGEADIYLIKVRVPRDYE STNNKIMEQVAKKHKNVHIVDWYKASEGHSEYFAYDGIHLEYSGVKALSNEIIKKMKEVN EK Prediction of potential genes in microbial genomes Time: Sun May 29 08:06:54 2011 Seq name: gi|224999845|gb|ACJC01000155.1| Staphylococcus epidermidis W23144 contig00199, whole genome shotgun sequence Length of sequence - 23647 bp Number of predicted genes - 21, with homology - 21 Number of transcription units - 13, operones - 5 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 225 - 284 12.8 1 1 Op 1 1/1.000 + CDS 322 - 1482 1181 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 2 1 Op 2 . + CDS 1495 - 2493 971 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 2497 - 2542 6.5 - Term 2477 - 2537 12.0 3 2 Op 1 15/0.000 - CDS 2547 - 2753 329 ## COG2608 Copper chaperone - Prom 2783 - 2842 8.4 4 2 Op 2 . - CDS 2885 - 5269 2553 ## COG2217 Cation transport ATPase - Prom 5348 - 5407 7.7 5 3 Tu 1 . - CDS 5508 - 5714 168 ## SERP2130 hypothetical protein - Prom 5856 - 5915 6.4 + Prom 5713 - 5772 6.7 6 4 Op 1 7/0.000 + CDS 5917 - 6786 1049 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 6796 - 6851 10.6 + Prom 7130 - 7189 7.5 7 4 Op 2 . + CDS 7293 - 8837 1960 ## COG1012 NAD-dependent aldehyde dehydrogenases + Prom 8975 - 9034 5.7 8 5 Op 1 22/0.000 + CDS 9134 - 9361 300 ## COG1918 Fe2+ transport system protein A 9 5 Op 2 . + CDS 9367 - 11361 1991 ## COG0370 Fe2+ transport system protein B 10 5 Op 3 . + CDS 11376 - 11558 159 ## SERP2125 hypothetical protein + Term 11576 - 11625 11.1 + Prom 11646 - 11705 8.2 11 6 Tu 1 . + CDS 11740 - 12204 627 ## SE2112 hypothetical protein + Term 12260 - 12303 5.2 + Prom 12381 - 12440 7.0 12 7 Tu 1 . + CDS 12509 - 13027 420 ## COG0350 Methylated DNA-protein cysteine methyltransferase + Term 13090 - 13130 2.9 - Term 13165 - 13212 6.4 13 8 Tu 1 . - CDS 13281 - 14447 1228 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Prom 14576 - 14635 7.6 + Prom 14540 - 14599 9.4 14 9 Tu 1 . + CDS 14692 - 15969 1562 ## COG1257 Hydroxymethylglutaryl-CoA reductase + Term 15979 - 16043 7.2 - Term 15967 - 16030 -0.6 15 10 Tu 1 . - CDS 16046 - 16480 445 ## COG3942 Surface antigen - Prom 16515 - 16574 8.0 - Term 16619 - 16669 10.1 16 11 Tu 1 . - CDS 16738 - 16935 149 ## SERP2119 hypothetical protein - Prom 17043 - 17102 10.6 + Prom 16966 - 17025 10.5 17 12 Op 1 3/0.000 + CDS 17156 - 18025 791 ## COG0583 Transcriptional regulator + Prom 18116 - 18175 10.4 18 12 Op 2 23/0.000 + CDS 18339 - 18731 431 ## COG1380 Putative effector of murein hydrolase LrgA 19 12 Op 3 1/1.000 + CDS 18728 - 19417 495 ## COG1346 Putative effector of murein hydrolase 20 12 Op 4 1/1.000 + CDS 19467 - 21206 2207 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 21220 - 21259 6.4 + Prom 21244 - 21303 9.6 21 13 Tu 1 . + CDS 21449 - 23476 2382 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 23513 - 23556 7.1 Predicted protein(s) >gi|224999845|gb|ACJC01000155.1| GENE 1 322 - 1482 1181 386 aa, chain + ## HITS:1 COG:SA2347 KEGG:ns NR:ns ## COG: SA2347 COG0436 # Protein_GI_number: 15928139 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Staphylococcus aureus N315 # 3 385 2 384 384 654 79.0 0 MEMSERLASIPDSYFGKTMGQKVEHGPLPLINMAVGIPDGETPKGIINHFSEALCIPENQ KYGPFHGKDAFKQAIVNFYQRHYDVELDKEDEVCILYGTKNGLVALPTCVVNPGEIVLLP DPGYTDYLAGVMLADAKPLPLKLSPPNYLPNWNTINAKVLEKTKLIYLTYPNNPTGSTAT QDVFDEAIHRFKGTQTKIVHDFAYSAFGFDAKNPSILASNNAKDVAIEIFSLSKGYNMSG FRVGFAVGNKKMIQALKKYQTHTNAGMFGALQDAATYALNHYDEFLEKQNEIFRRRRDNF ESQLQRAHLPFVHSKGGIYIWLHTPPGYDSEAFEQLLLKEKSILVAPGKPFGENGNQYVR ISLALDDKQLEEATNRLAQLRYLYER >gi|224999845|gb|ACJC01000155.1| GENE 2 1495 - 2493 971 332 aa, chain + ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 332 1 332 332 477 68.0 1e-134 MTKIKLMGVRQEDEPYIEMWSQQHEVEVEMSKEQLTEDNVQSIEGFDGLSLSQTLPLSET IYNKLNQLGIRQIAQRSAGFDGYDLELASKYGLIISNVPSYSPRSIAEFTVTQAINIVRH FNHIQRKMRLHDFRWEASILSQSIKDLKVAVIGTGHIGGIVAQIFSEGYLCDVVAYDPFP SEHVKPYVTYKQSINEAIQDADIVTIHMPSTQYNNYLFNENMFQMFKKGAVFVNCARGSL VDTKALLSAIDQGQIKGAALDTYEYEVGVYTTDRSEDGLNDPLLEELITREDIIVTPHIA FYTEAAIQHLIFDALDATMEVLNTGTTQLRVN >gi|224999845|gb|ACJC01000155.1| GENE 3 2547 - 2753 329 68 aa, chain - ## HITS:1 COG:SA2345 KEGG:ns NR:ns ## COG: SA2345 COG2608 # Protein_GI_number: 15928137 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Staphylococcus aureus N315 # 1 67 1 67 68 75 61.0 3e-14 MTQKIIKVEGMSCEHCRNAVESALAKLNGVSSAEVNLDENHVRVEYNDSKVTFDNMKEAI EEQGYDVK >gi|224999845|gb|ACJC01000155.1| GENE 4 2885 - 5269 2553 794 aa, chain - ## HITS:1 COG:SA2344 KEGG:ns NR:ns ## COG: SA2344 COG2217 # Protein_GI_number: 15928136 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Staphylococcus aureus N315 # 1 794 1 795 802 1142 73.0 0 MANTTLTLDIIGMTCAACSNRIEKKLNRMNHVQAKVNLTTEKATIDYESDDYHLKDFVEQ IQSLGYDVAVEQVELNINGMTCAACSNRIEKVLNQTQGVQQATVNLTTEQAHIKYYPSAT NTEALIKRIQNIGYDAETKTSSKAQSNRKKQELKHKRNKLIISAILSLPLLLVMVVHISP ISIPSILVNPWVQLILSTPVQFIIGWQFYVGAYKNLRNGSANMDVLVAVGTSAAYFYSIY EMMMWLTHQTHHPHLYFETSAILITLILLGKYLEARAKSQTTNALSELLNLQAKEARVIK ENKEIMLPLDKVKVGDTLLIKPGEKIPVDGKVTKGDTSIDESMLTGESIPVEKSSGDSVI GSTMNKNGSIMIEATQVGGDTALSHIIKVVEDAQSSKAPIQRLADIISGYFVPIVVSIAV ITFIIWIVFVHPGQLEPALVSAISVLVIACPCALGLATPTSIMVGTGRAAENGILFKGGQ FVERAHYVDTIVLDKTGTITNGQPVVTDYVGDNETLQLLASAENASEHPLADAIVTYAKN KGLNLLDNDTFKSVPGHGIKATIHQQQILVGNRKLMNDYNISISNKLNDQLNHYEYLGQT AMMIAVDNQINGIIAVADTVKNDAKQAIKELRNMNIDVVMLTGDNNRTAQTIAKQVGIEH VIAEVLPEEKAHQISLLQDKGKQVAMVGDGINDAPALVKADIGMAIGTGAEVAIEAADIT ILGGDLLLVPKAIKASKATIKNIRQNLFWAFGYNVAGIPIAACGLLAPWIAGAAMALSSV SVVTNALRLKKMKL >gi|224999845|gb|ACJC01000155.1| GENE 5 5508 - 5714 168 68 aa, chain - ## HITS:1 COG:no KEGG:SERP2130 NR:ns ## KEGG: SERP2130 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 20 68 49 97 97 88 95.0 6e-17 MRKILKGIILSLIIIGLIKTFNEYDVIHCANHYFEQIKSGKMIEDIKIDHFNNYHNINFE NLNPSDFF >gi|224999845|gb|ACJC01000155.1| GENE 6 5917 - 6786 1049 289 aa, chain + ## HITS:1 COG:DRA0364 KEGG:ns NR:ns ## COG: DRA0364 COG1028 # Protein_GI_number: 15808022 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Deinococcus radiodurans # 9 287 111 388 390 323 56.0 3e-88 MDLLKFHNKIKGYTQNRQPGIEADMEPKPIAELEEYKAAGKLENKVALITGGDSGIGRAV AILYAKEGANVAIGYYDEHQDAEDTVNRLQEIGVKAKAYAHDLKDEKQSQKLIKDVINDF GGLNILVNNGGVQFPRDHFEDITPQQVKESFMTNIFGMMFLSQAAVPYLSEGDTIINTTS VTAYRGSGHLIDYSATKGAIVSFTRSLATTLMEKGIRVNAVAPGPIYSPLIPATFDEEKV EHQGGETPMGRRGQPAELAPSYVFLATHADSSYITGQVIHVNGGDFITS >gi|224999845|gb|ACJC01000155.1| GENE 7 7293 - 8837 1960 514 aa, chain + ## HITS:1 COG:SA2341 KEGG:ns NR:ns ## COG: SA2341 COG1012 # Protein_GI_number: 15928133 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 514 1 514 514 901 86.0 0 MVVPFKNEPGIDFSVQANVERFNEELRKVKAQLGQDIPLVINGEKLTKTDTFNSVNPANT SQLIAKVSKATQDDVEKAFESANHAYQSWKKWSHKDRAELLLRVAAIIRRRKEEISAIMV YEAGKPWDEAVGDAAEGIDFIEYYARSMMELADGKPVLDREGEHNRYFYKPIGTGVTIPP WNFPFAIMAGTTLAPVVAGNTVLLKPAEDTVLTAYKLMEILEEAGLPQGVVNFVPGDPKE IGDYLVDHKDTHFVTFTGSRATGTRIYERSAVVQEGQQFLKRVIAEMGGKDAIVVDNNVD TDLAAEAIVTSAFGFSGQKCSACSRAIVHQDVHDEILEKAIQLTQKLTLGNTEQNTFMGP VINQKQFDKIKNYIEIGKKEGKLETGGGTDDSTGYFVEPTIFSGLQSADRIMQEEIFGPV VGFVKVKDFDEAIEVANDTDYGLTGAVITNRREHWIKAVNEFDVGNLYLNRGCTAAVVGY HPFGGFKMSGTDAKTGSPDYLLNFLEQKVVSEMF >gi|224999845|gb|ACJC01000155.1| GENE 8 9134 - 9361 300 75 aa, chain + ## HITS:1 COG:SA2338 KEGG:ns NR:ns ## COG: SA2338 COG1918 # Protein_GI_number: 15928130 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Staphylococcus aureus N315 # 1 75 1 75 75 82 54.0 2e-16 MISVNNGVKNKKYRVKHIGISNKNMLYRLGALGLNIGSEISIKQKCLLNGPSVVEVNGQY LSLRQRDARLITLEE >gi|224999845|gb|ACJC01000155.1| GENE 9 9367 - 11361 1991 664 aa, chain + ## HITS:1 COG:SA2337 KEGG:ns NR:ns ## COG: SA2337 COG0370 # Protein_GI_number: 15928129 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Staphylococcus aureus N315 # 3 664 2 664 664 974 72.0 0 MTQSYCILGNPNVGKTSLFNALTGSYEYIGNWSGVTVEKKVGKLKDNVGDLVDLPGIYDL SPISKDETVVTDYLMSTSFTGMINIIDACQLKRNLNLTIQLMELNKPMIIGLNMIDVATQ RGIKINYQALMRKLKIPVFPIVARKAKGTHNLLGELNYLEPHQRRAFKINYGTEIETAIQ QICSIIKQDNMYPTERLRFIAIQYLIDNVQIYQELDAMTLEQLEPIKRGLSNATEQSTRQ RIEAVRNDYINQLLEDIVEYPEEDKQFFTSKVDRLLLNRYLGIPIFLGIMWLIFQTTFTW IGTPLSDQLDAFISGPLSEWIKSVMNTLHITSFLQDLITDGIIAGVGSVLVFVPQIVVLF FFISLLEDSGYMARIAVLMDKTMESIGLSGKSFIPMIIGFGCNVPSIMAARSIENEKERL ITILVAPFMSCSARLPVYALFVGAFFSAHQSLVVLSLYILGIVVALLVSTLLNKLILKDN QSVFIVELPTYRFPSFKTLWRSTWEKAKGFVKKAGTFIFGGSVVIWTLTYIGPHGVNVPI NQSFMHMIGQGFANLIAPLGFGSWQAGATLIPGFLAKEVIISSMAILYSSSESGLTQVIQ HQFTPLSAYAFMIFILLYVPCISTVATIRKETSSWKWTLLAVVYPIVTAYILTFIFYQVS QLFI >gi|224999845|gb|ACJC01000155.1| GENE 10 11376 - 11558 159 60 aa, chain + ## HITS:1 COG:no KEGG:SERP2125 NR:ns ## KEGG: SERP2125 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 60 1 60 60 108 96.0 7e-23 MFILVNTILFIAIFGYTAMTLVKFFKRSKEGDCGGCKSNCKCDTNPSPHKNKLNIPHIKS >gi|224999845|gb|ACJC01000155.1| GENE 11 11740 - 12204 627 154 aa, chain + ## HITS:1 COG:no KEGG:SE2112 NR:ns ## KEGG: SE2112 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 154 1 154 154 253 94.0 2e-66 MKGSKKLNELLEDNHKKLKKLFKYDHKKALAFTPEDREKVKDKFGVYVIFDQEKPVFVGQ TGGYSSTHQPINSDLYTKLGQYNSHSETGTTKFRKAFAQNKDLNQNHLKDITADNYGFTF QYIKVKDEPAFINVLEILALEYAKNKGYELYNFQ >gi|224999845|gb|ACJC01000155.1| GENE 12 12509 - 13027 420 172 aa, chain + ## HITS:1 COG:SA2335 KEGG:ns NR:ns ## COG: SA2335 COG0350 # Protein_GI_number: 15928126 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Staphylococcus aureus N315 # 2 172 3 173 173 214 60.0 4e-56 MYQSMYDSPVGLLQLITNDGISLSHVLYPNQHLKGIKTKDTLDIFKDTKAWLREYFKGNY PEIKVPLAPKGTDFQQKVWNELQTIRYRELKTYGEIAKTIGRAMNKPAMSAQAVGGAVGS NPISILIPCHRVVGKDGNLTGYGGTLDNKIKLLKLEKIDMTHLYRPKKTTKP >gi|224999845|gb|ACJC01000155.1| GENE 13 13281 - 14447 1228 388 aa, chain - ## HITS:1 COG:SA2334 KEGG:ns NR:ns ## COG: SA2334 COG3425 # Protein_GI_number: 15928125 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Staphylococcus aureus N315 # 1 388 1 388 388 618 82.0 1e-177 MNIGIDKISFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK DIITEEDRKNIGMVIVATESAIDNAKAAAVQIHHLLGIQPFARCFEMKEACYAATPAIQL AKDYLAQRPNEKVLVIASDTARYGIRSGGEPTQGAGAVAMMISHNPSILKLNDDAVAYTE DVYDFWRPTGHQYPLVAGALSKDAYIKSFQESWNEYARRHNKTLADFASLCFHVPFTKMG QKALDSIINHADETTQERLNSSYQNAVDYNRYVGNIYTGSLYLSLISLLETRDLKGGQTI GLFSYGSGSVGEFFSGTLVDGFKEQLDVERHKSLLNNRIEVSVDEYEHFFERFDHLELNH ELEKSNEDRDIFYLKSIDNNIREYHIAE >gi|224999845|gb|ACJC01000155.1| GENE 14 14692 - 15969 1562 425 aa, chain + ## HITS:1 COG:SA2333 KEGG:ns NR:ns ## COG: SA2333 COG1257 # Protein_GI_number: 15928124 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Staphylococcus aureus N315 # 1 424 1 424 425 646 81.0 0 MKSLDKGFRHLTRKDKLKELVEYGWLEDENYEILLNYPLINEEVANSLIENVIGQGALPV GLLPQIIVDGKEYVVPMMVEEPSVVAAASYGAKLVNQSGGFKTISSERLMIGQIVFDDVD DTGSLANSIYQIESQIHQIADEAYPSIKARGGGYQRIEIDTFPDQQLLSLKVFVDTKDAM GANMLNTILEAITAHLKVKFSNQNVLMSILSNHATASVVKVQGEIDIEDLHKGERSGEVV AQRMERASVLAQVDIHRAATHNKGVMNGIHAVVLATGNDTRGVEASAHAYASKDGHYRGI ATWEYDRSRNKLVGTIEVPMTLATVGGGTKVLPIAKASLDLLNVENAQELGQVVAAVGLA QNFSACRALVSEGIQQGHMSLQYKSLAIVVGAKGEEIAQVAEALKYESQANTAKAQEILM NIRES >gi|224999845|gb|ACJC01000155.1| GENE 15 16046 - 16480 445 144 aa, chain - ## HITS:1 COG:SA2332 KEGG:ns NR:ns ## COG: SA2332 COG3942 # Protein_GI_number: 15928123 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 1 144 1 143 143 180 69.0 7e-46 MKFKKLLSRIIIATMITFTGTLSYQAIEPTHISHAASHNYYGKKQCTWWAFKRRAQLGKP VSNRWGNAKNWYSNARQSGYATGHKPRKYAVMQSTRGYYGHVAVVEKVYKNGKIKISEYN YNVPLGYGTRIISKSSARNYNYIY >gi|224999845|gb|ACJC01000155.1| GENE 16 16738 - 16935 149 65 aa, chain - ## HITS:1 COG:no KEGG:SERP2119 NR:ns ## KEGG: SERP2119 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 65 7 71 71 124 95.0 9e-28 MQNFLGDDTPLGELVDWINQDINFPKDVKSQNEILTYFRNHPCPENIPVASIKRALAVFN QFTKV >gi|224999845|gb|ACJC01000155.1| GENE 17 17156 - 18025 791 289 aa, chain + ## HITS:1 COG:SA2330 KEGG:ns NR:ns ## COG: SA2330 COG0583 # Protein_GI_number: 15928121 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 286 9 294 295 417 71.0 1e-116 MKYFVEVVKQGGMTNASKSLYIAQPTISKAIKDIEAEMTVPLFDRSKRSLVLTDAGKIFF KKCQEIIALYDNLPTEINSLYGLETGHITISMSAVMSMRKFIGVLGDFHQLYPNITYNLI ESGGKTTENLILNDEVDIGVTTLPVDHHKFECISLNKEELTVVLNKEHPLAQKSSIKMEE LADENFILFNEDFYLNDKIIENAKNAGFVPNMASQISQWNVIENLVINQLGISILPATIA QLLNDDVKIVRLENAHTTWELGVVWKKDKRLSHATNKWIEFLKERLSEE >gi|224999845|gb|ACJC01000155.1| GENE 18 18339 - 18731 431 130 aa, chain + ## HITS:1 COG:SA2329 KEGG:ns NR:ns ## COG: SA2329 COG1380 # Protein_GI_number: 15928120 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Staphylococcus aureus N315 # 1 128 1 128 131 137 73.0 4e-33 MEKAKFVIKLILQLALIMLITFIGTEVQKLLHIPLAGSIVGLMLFFLLLQFKIIPESWIN VGADFLLKTMVFFFIPSVVGIMDVASNITMNYILFFIVIIIGTCLVALSSGYIAEKMLEK NNTRKGTDHS >gi|224999845|gb|ACJC01000155.1| GENE 19 18728 - 19417 495 229 aa, chain + ## HITS:1 COG:SA2328 KEGG:ns NR:ns ## COG: SA2328 COG1346 # Protein_GI_number: 15928119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Staphylococcus aureus N315 # 1 229 1 229 229 321 82.0 6e-88 MNEYLQAVLMILLTIVLYYISKKIQDKYKNPLLNPALIASIAIIIVLLVCGVSYKGYMKG GTWINHVLNATVVCLAYPLYQNKKKIKKYLTIIFTSVLTGVVLNFVLVFTTLKIFGYSKD TIVTLLPRSITAAVGIEVSQELGGTDTITVLFIITTGLIGSILGSMLLRMGGFKSSIARG LTYGNASHAFGTAKALELDIESGAFSSIGMILTAVISSVLIPVLILLFY >gi|224999845|gb|ACJC01000155.1| GENE 20 19467 - 21206 2207 579 aa, chain + ## HITS:1 COG:SA2327 KEGG:ns NR:ns ## COG: SA2327 COG0028 # Protein_GI_number: 15928118 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 1 579 1 579 579 1012 84.0 0 MAQIKANEALVKALQTWNIDHLYGIPGDSVDAVVDSLRTVRDQFKFYHVRHEEVASLAAA SYTKMTGKIGVALSIGGPGIVHLLNGMYDAKMDNVPQLIIAGQTNSTLLGTKFFQETNIS KMVDDVAVYHHQIQKGDNVFEITNEAIRTAYEKKGVSVIICPNDLLTQKIKDTTNRAVDT TKPKPVSPKFKSIKKAAKLIDKAKKPVMLIGLGTQHAKDELREFIEAAKIPVIHTLPAKT ILPDDHPYSIGNLGKIGTKTSYQTIQDADLLIMAGTNYPYVNYLPKKNIKAIQIDTNEEN IGARFKINVGILGDSKVAFHQLTENIKHVAKRPFLDKTLERKAVWDKWMKQDLNNDNSPL RPERLMKAINANLKDDAIISADVGTSTVWSTRYLNLSVNNKFIISSWLGTMGCGLPGAMA AKIAYPNRQAVAITGDGAFQMVMQDFATAVQYNLPMTIFVLNNKQLSFIKYEQQAAGELE YAIDFSDMDHAKFAEAAGGKGYVVRDVSRLDDIVEEAMAQDVPTIVDVHVDPNAAPLPGK IVNEEAFGYSKWAYRSITEDKNLDFDQIPPISVAAKRFL >gi|224999845|gb|ACJC01000155.1| GENE 21 21449 - 23476 2382 675 aa, chain + ## HITS:1 COG:SA0183_1 KEGG:ns NR:ns ## COG: SA0183_1 COG1263 # Protein_GI_number: 15925893 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 1 428 1 428 428 743 87.0 0 MFKKLFGQMQRIGKALMLPVAILPAAGLLLAIGTAFQGEALQHYLPFIKNDIVQQIANML TGAGGIIFDNLPIIFALGVAIGLAGGDGVAAIAAFVGFIILNKTMGAFLHVTPDKLSDPT NGYANVLGIPTLQTGVFGGIIIGALAAWCYNKFYNITLPSYLGFFAGKRFVPIMMATTSF ILAFPMAIIWPTIQNGLNAFSEGLLDSNTGLAVFLFGFIKRLLIPFGLHHIFHAPFWFEF GSWKNAAGEIIRGDQRIFIEQIREGAHLTSGKFMQGEFPVMMFGLPAAALAIYQTAKPEN KKVVAGLMISAALTSFLTGITEPLEFSFLFVAPFLFVIHAVLDGLSFLTLYLLNVHLGYT FSGGFIDYVLLGILPNKTAWWLVIPVGIIYAVIYYFVFRFLIVKFNYKTPGREDKKSTVT TTSASQLPFDVLKAMGGKENIKHLDACITRLRVEVNEKSKVDVAGLKSLGASGVLEVGNN MQAIFGPKSDQIKHDMAKIISGEITKPSETTIDEEVSDEPVHVEDIVETEIYAPGHGEII PLSEVPDKVFSEKMMGDGIGFVPDSGEIVAPFDGTVKTIFPTKHAIGLESDSGVEVLIHI GIDTVKLNGEGFESLVNTDEPVTQGQPLMKIDLEYLKEHAPSIITPVIITNQEDKTLTIE DVKQVDPVKAIMTIK Prediction of potential genes in microbial genomes Time: Sun May 29 08:07:26 2011 Seq name: gi|224999844|gb|ACJC01000156.1| Staphylococcus epidermidis W23144 contig00200, whole genome shotgun sequence Length of sequence - 82960 bp Number of predicted genes - 74, with homology - 73 Number of transcription units - 48, operones - 14 average op.length - 2.9 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 140 - 188 5.5 1 1 Tu 1 . - CDS 200 - 1252 1061 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 1285 - 1344 7.1 + Prom 1221 - 1280 7.8 2 2 Tu 1 . + CDS 1476 - 1802 378 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 1843 - 1903 5.1 + Prom 1849 - 1908 7.5 3 3 Op 1 . + CDS 1986 - 2834 765 ## COG1284 Uncharacterized conserved protein + Prom 2836 - 2895 4.1 4 3 Op 2 . + CDS 2917 - 3897 1094 ## COG0657 Esterase/lipase + Term 3955 - 4007 4.5 - Term 3862 - 3905 -0.9 5 4 Tu 1 . - CDS 3969 - 4286 337 ## SE2094 hypothetical protein - Prom 4347 - 4406 12.8 + Prom 4647 - 4706 5.9 6 5 Op 1 . + CDS 4735 - 5892 1029 ## SERP2107 CapB protein 7 5 Op 2 . + CDS 5894 - 6346 480 ## SERP2106 CapC protein 8 5 Op 3 . + CDS 6370 - 7443 1018 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) 9 5 Op 4 . + CDS 7418 - 7594 192 ## SH0534 hypothetical protein 10 5 Op 5 . + CDS 7597 - 9201 1713 ## COG0405 Gamma-glutamyltransferase + Term 9223 - 9271 4.1 + Prom 9330 - 9389 10.6 11 6 Op 1 1/0.348 + CDS 9453 - 10334 1039 ## COG4975 Putative glucose uptake permease 12 6 Op 2 6/0.000 + CDS 10356 - 10760 444 ## COG1869 ABC-type ribose transport system, auxiliary component 13 6 Op 3 . + CDS 10814 - 11737 982 ## COG0524 Sugar kinases, ribokinase family 14 6 Op 4 . + CDS 11765 - 11986 75 ## 15 6 Op 5 . + CDS 12028 - 13518 1513 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 13528 - 13571 4.3 + Prom 13552 - 13611 8.4 16 7 Tu 1 . + CDS 13792 - 14577 363 ## SERP2098 hypothetical protein + Prom 15014 - 15073 9.6 17 8 Op 1 1/0.348 + CDS 15230 - 16273 1281 ## COG1299 Phosphotransferase system, fructose-specific IIC component 18 8 Op 2 9/0.000 + CDS 16276 - 16956 938 ## COG1760 L-serine deaminase 19 8 Op 3 . + CDS 16969 - 17868 1152 ## COG1760 L-serine deaminase + Term 17881 - 17927 12.2 20 9 Tu 1 . - CDS 18305 - 18799 532 ## COG1247 Sortase and related acyltransferases - Prom 18983 - 19042 7.3 + Prom 18893 - 18952 8.8 21 10 Tu 1 . + CDS 18972 - 19583 692 ## COG3764 Sortase (surface protein transpeptidase) + Term 19681 - 19727 9.6 + Prom 19719 - 19778 6.5 22 11 Tu 1 . + CDS 19927 - 20736 808 ## COG0561 Predicted hydrolases of the HAD superfamily - Term 20729 - 20766 -0.9 23 12 Tu 1 . - CDS 20921 - 21913 1114 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 21943 - 22002 6.0 + Prom 21942 - 22001 8.7 24 13 Tu 1 . + CDS 22159 - 22821 849 ## COG0778 Nitroreductase + Term 22958 - 23002 2.3 + Prom 22900 - 22959 8.6 25 14 Tu 1 . + CDS 23201 - 24694 1859 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 24712 - 24751 9.1 - Term 25040 - 25074 2.2 26 15 Tu 1 1/0.348 - CDS 25152 - 25949 956 ## COG2514 Predicted ring-cleavage extradiol dioxygenase - Prom 25995 - 26054 8.3 - Term 26037 - 26084 6.2 27 16 Tu 1 . - CDS 26211 - 26492 508 ## COG2388 Predicted acetyltransferase + Prom 26554 - 26613 10.5 28 17 Tu 1 . + CDS 26695 - 27606 767 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 27610 - 27665 8.1 - Term 27598 - 27653 10.6 29 18 Op 1 . - CDS 27677 - 29101 1575 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 29233 - 29292 5.4 - Term 29305 - 29339 5.3 30 18 Op 2 . - CDS 29348 - 30397 871 ## COG3949 Uncharacterized membrane protein - Prom 30447 - 30506 9.5 31 19 Tu 1 . + CDS 30745 - 32532 1499 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 32648 - 32708 12.0 - Term 32644 - 32685 4.9 32 20 Tu 1 . - CDS 32755 - 34719 1984 ## COG3855 Uncharacterized protein conserved in bacteria - Prom 34802 - 34861 8.0 - Term 34838 - 34885 4.2 33 21 Tu 1 . - CDS 34893 - 35507 274 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 35544 - 35603 6.9 34 22 Op 1 5/0.000 - CDS 35615 - 36613 742 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 35 22 Op 2 . - CDS 36615 - 37382 880 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 36 22 Op 3 . - CDS 37384 - 37584 211 ## SERP2072 thiamine biosynthesis protein ThiS 37 22 Op 4 4/0.000 - CDS 37568 - 38686 1064 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 38 22 Op 5 . - CDS 38679 - 39161 406 ## COG0352 Thiamine monophosphate synthase + Prom 39762 - 39821 7.9 39 23 Tu 1 . + CDS 39950 - 41224 1462 ## COG0477 Permeases of the major facilitator superfamily + Term 41231 - 41283 7.6 + Prom 41294 - 41353 9.9 40 24 Tu 1 . + CDS 41377 - 41667 515 ## COG1359 Uncharacterized conserved protein + Term 41744 - 41799 5.1 + Prom 41675 - 41734 3.2 41 25 Op 1 1/0.348 + CDS 41829 - 43742 1678 ## COG1289 Predicted membrane protein 42 25 Op 2 1/0.348 + CDS 43816 - 44229 669 ## COG4876 Uncharacterized protein conserved in bacteria + Term 44253 - 44296 2.0 + Prom 44272 - 44331 9.7 43 26 Tu 1 . + CDS 44493 - 45194 833 ## COG2357 Uncharacterized protein conserved in bacteria + Term 45236 - 45282 4.7 - Term 45224 - 45270 5.5 44 27 Tu 1 . - CDS 45314 - 46231 718 ## COG0671 Membrane-associated phospholipid phosphatase - Prom 46465 - 46524 13.2 + Prom 46449 - 46508 8.0 45 28 Op 1 . + CDS 46538 - 47413 1050 ## SERP2063 esterase, putative + Term 47444 - 47485 0.4 46 28 Op 2 . + CDS 47499 - 48149 396 ## COG0789 Predicted transcriptional regulators + Term 48275 - 48313 6.2 - Term 48324 - 48363 -0.5 47 29 Tu 1 . - CDS 48373 - 49731 1498 ## COG2271 Sugar phosphate permease - Prom 49781 - 49840 12.5 48 30 Op 1 2/0.000 + CDS 50135 - 50779 689 ## COG1802 Transcriptional regulators 49 30 Op 2 2/0.000 + CDS 50802 - 52343 1606 ## COG1070 Sugar (pentulose and hexulose) kinases 50 30 Op 3 . + CDS 52393 - 53751 1740 ## COG2610 H+/gluconate symporter and related permeases + Prom 53811 - 53870 5.4 51 31 Tu 1 . + CDS 54084 - 54866 1066 ## COG1210 UDP-glucose pyrophosphorylase + Term 54880 - 54920 4.4 - Term 54963 - 55003 3.1 52 32 Tu 1 . - CDS 55080 - 56720 1733 ## COG1109 Phosphomannomutase - Prom 56844 - 56903 11.7 + Prom 56783 - 56842 9.8 53 33 Op 1 6/0.000 + CDS 56938 - 58428 1230 ## COG0438 Glycosyltransferase + Term 58452 - 58495 5.4 + Prom 58484 - 58543 10.9 54 33 Op 2 3/0.000 + CDS 58696 - 59094 464 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 55 33 Op 3 . + CDS 59096 - 61954 2023 ## COG1061 DNA or RNA helicases of superfamily II + Term 62008 - 62050 -0.8 + Prom 62003 - 62062 6.1 56 34 Tu 1 . + CDS 62106 - 62297 245 ## SERP2051 hypothetical protein + Term 62400 - 62450 11.2 57 35 Tu 1 . - CDS 62580 - 62879 278 ## SAR2568 hypothetical protein - Prom 62941 - 63000 9.1 + Prom 62917 - 62976 10.6 58 36 Op 1 . + CDS 63092 - 63784 199 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 + Prom 63794 - 63853 5.5 59 36 Op 2 . + CDS 63873 - 65129 1649 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases - Term 65124 - 65165 -1.0 60 37 Op 1 11/0.000 - CDS 65296 - 67461 1803 ## COG0855 Polyphosphate kinase 61 37 Op 2 . - CDS 67524 - 69056 1442 ## COG0248 Exopolyphosphatase - Prom 69184 - 69243 8.6 + Prom 69266 - 69325 4.8 62 38 Tu 1 . + CDS 69373 - 70191 214 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 70204 - 70260 9.2 - Term 70192 - 70247 9.0 63 39 Op 1 . - CDS 70383 - 70571 190 ## SERP2044 hypothetical protein 64 39 Op 2 . - CDS 70588 - 71664 1211 ## COG1363 Cellulase M and related proteins - Prom 71757 - 71816 6.8 + Prom 71747 - 71806 9.1 65 40 Tu 1 . + CDS 71848 - 72315 636 ## COG4808 Uncharacterized protein conserved in bacteria + Term 72319 - 72369 16.5 - Term 72307 - 72356 12.5 66 41 Tu 1 . - CDS 72368 - 73945 1564 ## COG0069 Glutamate synthase domain 2 - Prom 73971 - 74030 5.6 + Prom 74003 - 74062 6.5 67 42 Tu 1 . + CDS 74090 - 74872 627 ## COG1266 Predicted metal-dependent membrane protease + Term 75058 - 75092 -0.8 + Prom 75111 - 75170 9.9 68 43 Tu 1 . + CDS 75191 - 75670 400 ## COG1266 Predicted metal-dependent membrane protease + Term 75808 - 75846 -0.9 + Prom 75744 - 75803 7.0 69 44 Op 1 4/0.000 + CDS 75966 - 76628 231 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 70 44 Op 2 1/0.348 + CDS 76621 - 77397 766 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 77437 - 77490 10.2 + Prom 77437 - 77496 6.2 71 45 Tu 1 . + CDS 77531 - 78709 1074 ## COG2814 Arabinose efflux permease 72 46 Tu 1 . - CDS 78792 - 80147 1013 ## COG2272 Carboxylesterase type B - Prom 80280 - 80339 6.1 - Term 80391 - 80430 3.0 73 47 Tu 1 . - CDS 80469 - 82148 1524 ## COG0531 Amino acid transporters - Prom 82274 - 82333 10.4 + Prom 82240 - 82299 15.6 74 48 Tu 1 . + CDS 82332 - 82928 631 ## COG4430 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|224999844|gb|ACJC01000156.1| GENE 1 200 - 1252 1061 350 aa, chain - ## HITS:1 COG:SP2055 KEGG:ns NR:ns ## COG: SP2055 COG1063 # Protein_GI_number: 15901875 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 1 349 1 350 352 524 72.0 1e-149 MKAYEYLKPGHAQLTDKEKPTITSSTDAIIRIVKTTICGTDLHIIKGDTPEVQSHTTLGH EGIGIIEEIGDNVNNFKVGDKVIISCISSCGKCYYCKKGIYAHCENGGGWILGHLVNGTQ AEYVKVPFADNSLYHAPSNLKDDALVMLSDILPTGYEIGVLKGKVKPGCTVAIVSAGPVG LAALLTAQFYSPSKIIMIDLDDNRLETAKELGATHLINSKETETAIKKVKSLNPRGVDVA IEAVGIPQSFDLCQNLIGVDGTIANVGVHGLPVQLDIDKLWIKNINVTTGLVSGNTTEEL LEALKSKIIQPEQLVTHYSKLSEIESAYDLFRNATDHKAIKLIIENDITI >gi|224999844|gb|ACJC01000156.1| GENE 2 1476 - 1802 378 108 aa, chain + ## HITS:1 COG:SA2324 KEGG:ns NR:ns ## COG: SA2324 COG0526 # Protein_GI_number: 15928115 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 108 1 108 118 135 63.0 2e-32 MYENLQNIEDFYRFINVHDLAVVHIMRDNCTVCHAVLPQIQDLLKDYPKAQLGVINQSNV EEIAGELSIFTVPVDLIFFNGKEMHRQARFIDMQSFEKQLYMMQNAID >gi|224999844|gb|ACJC01000156.1| GENE 3 1986 - 2834 765 282 aa, chain + ## HITS:1 COG:BS_yxkD KEGG:ns NR:ns ## COG: BS_yxkD COG1284 # Protein_GI_number: 16080935 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus subtilis # 7 281 2 276 278 219 42.0 7e-57 MKKQQNKVHMINISLCLIGTLLIAIAVNSFVIPGNLGEGGSIGLSLILNYTLGISPALSS FIINAILIIVGWKFLSRTTAIYTAITITASSIFLDLTHTFGLGIHDNFINSIFAGLMLGI GSGLVITAHSTLGGTSVIARIISKYSEIKTSQALLILDAIIVLSFIVVLPITNVLYTIVM LFIVEKSMSFVVEGFNPKKAVTVISKYNKEISADIYEMTGRGATLLSGKGAYQKSDTEVL YAVVSQNQVGAIKKIVNANDENAFLVIHDVRDVLGNGFINIK >gi|224999844|gb|ACJC01000156.1| GENE 4 2917 - 3897 1094 326 aa, chain + ## HITS:1 COG:SA2323 KEGG:ns NR:ns ## COG: SA2323 COG0657 # Protein_GI_number: 15928114 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 321 1 321 322 378 57.0 1e-105 MFKKIATIIGSTLFGTVLFAKMKEKRSYKSFLQEKMIRMSGMKKTFESVDDAKKALNETK YQTAGKYSGTTYDFKHKVQIRDYYGSLVYVVNDHGLPDQRTVLYVHGGAWFQDPLESHFE YLDLLVDALDARVIMPVYPKIPHRDYRTTFELLTKIYKRLLTKIDKPENLVIIGDSAGGQ IALAFAQMLKKEQLSQPGHIVLISPVLDATFKNPEARKYEKEDPMLGIDGSKYLVELWAG DTPLDDYKMSPMNGDLEGLGHITLTVGTKETLYPDAVKFSHMLNEQNIKHQFIPGYNLFH IYPLFPIPERQRFLEQLKKIIVTKEL >gi|224999844|gb|ACJC01000156.1| GENE 5 3969 - 4286 337 105 aa, chain - ## HITS:1 COG:no KEGG:SE2094 NR:ns ## KEGG: SE2094 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 105 1 105 105 139 98.0 3e-32 MEKSVKLAVGIYLAIILIICSIYLAFILIGSLNGKDMSNSVLDTDHSRINNTSRNSSEDV TSSNNESNNTKAHSFSNSEYKAVNINEAYKNNKHIKKANSSYQYY >gi|224999844|gb|ACJC01000156.1| GENE 6 4735 - 5892 1029 385 aa, chain + ## HITS:1 COG:no KEGG:SERP2107 NR:ns ## KEGG: SERP2107 # Name: capB # Def: CapB protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 385 1 385 385 769 98.0 0 MLLIIACVALILWLGIKEKKRHANRLEKIPLRININGIRGKSTITRMAYSVLREDQYRVI GKTTGTDARMLYWFTEKEYPVIRKPQGANIGEQRDIIRKVVKQKANALVNECMAVNPDYQ ITFQNDLVKANIGVIVNVMEDHMDVLGPTLKDVAQAFTATIPYNGKLVVMKDDYTSFFAK EAKKRNSELIVVNKDVIPESYLRKFDYLVFPDNVAIVLGIAQAVGVDEETALQGMLNAPA DPGAVRIKYFHANRTKNVFVNAFAANEPQSTKAILNKVESYKYPYDKKIIILNCRSDRVD RTQLFVDNFLGEVDYDVLICTGKSTQMVTQFMETMPEKTYINYEGRDFVEIEKGILHEAE NALVFCVGNIHGPGGRIAEFIEGIE >gi|224999844|gb|ACJC01000156.1| GENE 7 5894 - 6346 480 150 aa, chain + ## HITS:1 COG:no KEGG:SERP2106 NR:ns ## KEGG: SERP2106 # Name: capC # Def: CapC protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 150 1 150 150 214 100.0 5e-55 MIGSELYFSLFVGVVLSLIFAEKFGINPAGLVVPGYLALIFDQPIMLLSVLIISCLTYFI VSNGISKWVILYGRRKFAAMILTGMVIKFIFDLLYPLTPFEMVEVSGIGVVIPGIIANTI QKQGVVITLSTTMLLTCITYIILFLYSFIN >gi|224999844|gb|ACJC01000156.1| GENE 8 6370 - 7443 1018 357 aa, chain + ## HITS:1 COG:BS_ywtB KEGG:ns NR:ns ## COG: BS_ywtB COG2843 # Protein_GI_number: 16080641 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Bacillus subtilis # 4 333 2 350 380 109 27.0 8e-24 MTKKKRLSPSEWLLKQSKRHKRKNTLYTAIVLLVALVLLIFAVNSIKVEPVKSDTRDKDS IRLTYLGNVTLNKHIRQTNLNDVFKGIQDTLDHSDFSTGSLIVNDFSKKQKDNINKNIEN IMFLRKHNVKSVNLINESMDNIQATAMMRKIDSQAGYNFLTGNGSNPINSKTVQQDIKGK KIANVSFTDIESNYTNSLKNTTSISLDPDIFYPLIKKLKENNDYVVVNVDWGIPNERNVT TRQKEYAHALANAGADVIIGHNTVIQKVENYKRTPIFYSLGNTTSDNFLSKNQKGMIVQQ DWKGSHNQFHITPIQSKDGKISKDNMNKMDHIRFKNNIKDKSIDLKSDQNGGYTFEY >gi|224999844|gb|ACJC01000156.1| GENE 9 7418 - 7594 192 58 aa, chain + ## HITS:1 COG:no KEGG:SH0534 NR:ns ## KEGG: SH0534 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 58 1 58 58 80 67.0 1e-14 MEDILLNIKKHWLPIVVVILVVVIFLLVTFARANEGLDNYEQHELNNGEQQYLSKGAS >gi|224999844|gb|ACJC01000156.1| GENE 10 7597 - 9201 1713 534 aa, chain + ## HITS:1 COG:ECs4293 KEGG:ns NR:ns ## COG: ECs4293 COG0405 # Protein_GI_number: 15833547 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyltransferase # Organism: Escherichia coli O157:H7 # 50 475 46 517 581 174 30.0 5e-43 MNIYNKVTLSVILVITIIISFLFYFYTTEKKVDKDKLYENKITNHKQAGKPKNYGVASNN KIATKVGNKIIEDGGNAVDAAIGVSYALAVTEPHSSGLGGGGATLTYNGKENETPKAYEY KTMSSYEYKEGDKIGVPGLVRGLHDMHVKEGKMDEKKILDYVIPLAKDGFEVDSELERSL KLYGRDIDHNSPFYKGNKSVREGDIVKQDKLANTLTKIKDKGPDYFYEDIGKSVSKQLDN KLTERDFKEFKTEEKEAVSTDYKNNQVYSAPNPLGGTLMLQGLKIDEKENVDNMDRNNFI TAMIKSRDVMYKNRDIVNGNEPSNEQHLTDDYLLGELNKVNIGENTDNGSDFNQIRTDNT STTHFVIIDKNGKLASTTNTLSSYFGTGDYMKEGFYMNNSLGDFSKDKLSPNHGEPHKAP RSFISPSVIVGPNFYMGIGTPGGNKIPTILNEVIVDYLNSDGSLQESINKPRFYNDGGTI FYENAMTDEDINIFKSLGYGVEEKHNDPNFGSVQGAVYDKDKNTVDVGHDVGNR >gi|224999844|gb|ACJC01000156.1| GENE 11 9453 - 10334 1039 293 aa, chain + ## HITS:1 COG:SA0260 KEGG:ns NR:ns ## COG: SA0260 COG4975 # Protein_GI_number: 15925973 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 293 1 293 293 387 77.0 1e-107 MDFIAILIGLGPLLGWGLFPTIASKFGGRPVNQIFGATVGTLIFAIVLALFKGIGLPGGM ALVFSLISGAGWAFGQIITFKAFELVGSSRAMPITTAFQLLGASLWGVFALGNWPGITNK IIGFLALLVILIGARMTVWTETKQQEYSKNLRSAVLLLLVGEIGYWIYSAAPQATDIGGF KAFLPQAIGMVIVAVIYALMNMSKGNAFKEKVSWQQIISGFFFAFAALTYLISAQPNMNG LATGFVLSQTSVVLATLTGIFFLNQKKTSKELMITIVGLVLILVAASITVFIK >gi|224999844|gb|ACJC01000156.1| GENE 12 10356 - 10760 444 134 aa, chain + ## HITS:1 COG:SA0259 KEGG:ns NR:ns ## COG: SA0259 COG1869 # Protein_GI_number: 15925972 # Func_class: G Carbohydrate transport and metabolism # Function: ABC-type ribose transport system, auxiliary component # Organism: Staphylococcus aureus N315 # 1 134 1 134 134 173 75.0 1e-43 MKKTAVLNSHISSAISTLGHYELLTINDAGMPIPNDDRRIDLAVTKSLPRFIDVLETVLT EMEIQKVYLAEEIKTTNAQQLKAIKKLINDDVEIKFIAHSEMKEMLKSPLNKGNIRTGEI TPFSNIILESNVTF >gi|224999844|gb|ACJC01000156.1| GENE 13 10814 - 11737 982 307 aa, chain + ## HITS:1 COG:SA0258 KEGG:ns NR:ns ## COG: SA0258 COG0524 # Protein_GI_number: 15925971 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 4 302 3 301 304 350 64.0 2e-96 MNKNKVIVIGSTNVDKFLNVKRFPKPGETLHINQAQKEFGGGKGANQAIAASRLAADTTF ISKIGKDGNANFILEDFKKAGIHTQYILTSESEETGQAFITVDEAGQNTILVYGGANMTL SATDVEMSAEAFIGADFVVAQLEVPFEAIEQAFKIARKQNITTVLNPAPAIELPKSLLEL TDIIIPNETEAELLTGISINNESDMKETATYFLDLGISAVLITLGEQGTYCAYQEQYKMI PACNVKAVDTTAAGDTFIGAFLSELNKDLSNLESAIRLANQASSLTVQRKGAQASIPTRK EVEAEYN >gi|224999844|gb|ACJC01000156.1| GENE 14 11765 - 11986 75 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSQTFFTYKEGIFKFYNFLNNIKGSIKRNYRKIEQIKPVARRGRNLTRILLHALILCNGY FLILSFNSQSNYL >gi|224999844|gb|ACJC01000156.1| GENE 15 12028 - 13518 1513 496 aa, chain + ## HITS:1 COG:BH2756 KEGG:ns NR:ns ## COG: BH2756 COG1070 # Protein_GI_number: 15615319 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus halodurans # 6 491 4 493 498 536 52.0 1e-152 MVKEVVLGIDLGTSAIKIIAVDQLGNVIESVSETLKLYQEHPGYSEQDPNEWFEATKKGI KELIQSTEMSDKIVKGISFSGQMHGLVIVDDNGIPLRKAILWNDTRNSIQCRQIENIYGE RLNYNPILEGFTLPKMLWVQQHEPEIWSRVDVFMLPKDYLRYCLTQTIHMEYSDACSTLL FNPENCEWTRDVGDTFNIGDIYPPLVQSHSYVGNVTESLANELGLSSDVAVYAGGGDNAC GAIGAGVIHDKSALCSIGTSGVVLNVEYQRVTSYDSNLHLFNHSVPDTYYAMGVTLAAGY SLNWLKQTFFENESFEEILNLAASSKIGANGLLFTPYLAGERTPHGDAQIRGSFIGISGQ HTKADFARAVIEGITYSLYDSIKIMRRAGHEMNSITSIGGGAKSRFWLQLQADIFNVQIK RLKHEEGPSMGAAILAAYGLGWFKTIESCVEAFIKVDEVFEPNNENHDLYEQYYSVYEAI YKQTKQLTADLLTITN >gi|224999844|gb|ACJC01000156.1| GENE 16 13792 - 14577 363 261 aa, chain + ## HITS:1 COG:no KEGG:SERP2098 NR:ns ## KEGG: SERP2098 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 261 1 261 261 451 98.0 1e-126 MFISKQELYEKLQYVTPRTFAYLNEIDYYNLLMIIEEHQISIPPIHQLRKTLRGSKIMKP KNRVDNCYIHLKDEIPTPINNEQLSFLHFYPRQQIHLILSAYSRMKSLKLRPQLHCLKLK FPLDQHSIRKEITPPQSSDKDNDILICLLQKLINEITKCQVPVSLKNNSFEIKLPNYIIK VDLNYHEQQDHLYPLQYSIHAWHRDFQYLEISNTFMIPSLNDLIFHIQKLFLLIFQLPEH LARQEYSLSQYYFYSQCHTKD >gi|224999844|gb|ACJC01000156.1| GENE 17 15230 - 16273 1281 347 aa, chain + ## HITS:1 COG:SA2320 KEGG:ns NR:ns ## COG: SA2320 COG1299 # Protein_GI_number: 15928111 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 347 1 347 347 456 80.0 1e-128 MDIILGVGTLVLVLIIMTLFLNFAPYGKQGLQALSGAACATFLPQAFLSYAIGGVFHVKF FQEIGDLAGSLSGIAVGILTCLKLEVSPVFAVIVGLVLHDSKLLPAFIAAYVVAFGIKFV EKKVPEGLDLIVVILLAPAVTFGLANLISPGVIAVLKQIGSAITSVGDNNPYALAVILGL VIPVTGMTPLSSMVLTSLLGLTGIPMAIGALTCTGASFVNGILFSKLKIGNKGNAFAVFV EPLTQIDLIAKYPLQLFGANAIIGVVNACIVTYSGLIIDIKGMATPIAGAIVLYGFNDAV RSTITIIAVAIASVILAYVISAIINKFNLMNVGFKLPRRKNQVKESV >gi|224999844|gb|ACJC01000156.1| GENE 18 16276 - 16956 938 226 aa, chain + ## HITS:1 COG:SA2319 KEGG:ns NR:ns ## COG: SA2319 COG1760 # Protein_GI_number: 15928110 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 225 1 225 226 315 78.0 6e-86 MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAVLGDMPKHIEIRYYESFAKTHQ GHGTDVAIVGGAMGYSTFDSRIKSSLDIAKDENITIDIIEDEGESIGQHPNCAYIKANTK DGRYIEVIGISIGGGTIKLKGINVNGLDVELNHGLPMLVIDGNMNKAKINHLINDLSDMN LDLGEELIKTNDNEGLVVFPLNKAISESALNIIKDKHSDLNVSYIK >gi|224999844|gb|ACJC01000156.1| GENE 19 16969 - 17868 1152 299 aa, chain + ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 298 1 298 299 466 88.0 1e-131 MFDSIRETIDYSVENNISFADMMINDEMEREGKSREEVRDLMRQNLNVMREAVEKGTTGD GVESVTGYTGHDAAKLRDYNENNHALSGHEMIDAVKGAVATNEVNAAMGIICATPTAGSS GTIPGVIFKLEKTHNITEDQMIDFLFTSALFGRVVANNASVAGATGGCQAEVGSASAMAA AAAVSIFNGSPEQSGHAMALAISNLLGLVCDPVAGLVEIPCVMRNAIGSGNALISADLAL AGVESQIPVDEVIGAMDRVGRNLPASLRETGLGGLAGTPTGEEIKRKIFGEADNMVKNK >gi|224999844|gb|ACJC01000156.1| GENE 20 18305 - 18799 532 164 aa, chain - ## HITS:1 COG:SA2317 KEGG:ns NR:ns ## COG: SA2317 COG1247 # Protein_GI_number: 15928108 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Staphylococcus aureus N315 # 1 163 1 163 163 224 67.0 7e-59 MIRFARLEDLQDILTIYNDAILNTTAVYTYKPQQLDERLQWYQSKAKINEPIWVYEKKGK VVGFATYGSFRQWPAYLYTIEHSIYVHQQYRGLGIASQLLENLIHYAKEQGYRTIVAGID ASNMDSIALHKKFDFSHAGTIKNVGYKFNRWLDLSFYQYDLSDS >gi|224999844|gb|ACJC01000156.1| GENE 21 18972 - 19583 692 203 aa, chain + ## HITS:1 COG:SA2316 KEGG:ns NR:ns ## COG: SA2316 COG3764 # Protein_GI_number: 15928107 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Staphylococcus aureus N315 # 1 202 1 205 206 285 72.0 5e-77 MKQWMNRLITLIGVLLIILAIYLFSKPYIDNYLHEKDNDHKIENYDKKEKEQTKTSKSTP KIPSDKSKMAGYIEVPDAQIKEPVYPGPATPEQLNRGVSFAEGDESLNQQNISIAGHTFT DRPHYQFTNLKSAKIGSKVYFKTGNQTRKYKITKIRDVKPTEVKVLDEHPNKKNQLTLIT CDDYNEETGVWETRKIFIATQIN >gi|224999844|gb|ACJC01000156.1| GENE 22 19927 - 20736 808 269 aa, chain + ## HITS:1 COG:SA2313 KEGG:ns NR:ns ## COG: SA2313 COG0561 # Protein_GI_number: 15928104 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 264 1 264 266 382 74.0 1e-106 MIKAIAVDMDGTFLDSNKQFDRNRFETIFKELIDKNIKFIAASGNQFAKLKSIFGDREMF FISENGAVIYKGNQLYNYRSFDQYIFQKVVNYLNLNQKINNLIICGVKSAYILKETSEAF KQDARTYYHQLIEIDSLQTLPDDDYVKIAFNINRQTHPDLDEKLALKFKDDIKLVSSGRD SIDVIMPNMTKGQALSRLLKEWQMSASHLMAFGDANNDKDMLELAEHSYVMANSEDQSLF NIASHVAPSNDEQGVLSTIENVVLGYSNK >gi|224999844|gb|ACJC01000156.1| GENE 23 20921 - 21913 1114 330 aa, chain - ## HITS:1 COG:SA2312 KEGG:ns NR:ns ## COG: SA2312 COG1052 # Protein_GI_number: 15928103 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 330 22 351 351 545 81.0 1e-155 MTKIMFFGTRAYEKDMALRWGKENNIDVTTSTELLSVDTVDQLKDYDGVTTMQFGKLEPE VYPKLESYGIKQIAQRTAGFDMYDLELAKKHGIIISNIPSYSPETIAEYSVSIALQLVRK FPTIEKRVQAHNFTWASPIMSRPVKNMTVAIIGTGRIGAATGKIYAGFGAKVVGYDAYPN HSLSFLEYKETIEDAIKDADIISLHVPANKDSFHLFDNNMFKKVKKGAVLVNAARGAVIN TPDLIEAVNNGTLSGAAIDTYENEANYFTFDWSNQTIDDPILLDLIRNENILVTPHIAFF SDEAVQNLVEGGLNAALSVINTGTCDTRLN >gi|224999844|gb|ACJC01000156.1| GENE 24 22159 - 22821 849 220 aa, chain + ## HITS:1 COG:SA2311 KEGG:ns NR:ns ## COG: SA2311 COG0778 # Protein_GI_number: 15928102 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Staphylococcus aureus N315 # 1 219 1 219 223 340 72.0 2e-93 MNQMNQTIVDAFHFRHATKEFDPAKKISDEDFNTILETGRLSPSSLGLEPWHFVVVQNKE LREKLKAYSWGAQKQLDTASHFVLIFARKNVTAHTEYVQHLLRGVKKYEESTIPAVENKF DDFQESFHIADNERTLYDWASKQTYIALANMMTSAALLGIDSCPIEGFDLDKVTEILSDE GVLDTEQFGISVMVGFGYRAQEPKHGKVRQNEDDIISWIE >gi|224999844|gb|ACJC01000156.1| GENE 25 23201 - 24694 1859 497 aa, chain + ## HITS:1 COG:SA0162 KEGG:ns NR:ns ## COG: SA0162 COG1012 # Protein_GI_number: 15925871 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 4 497 3 495 495 702 70.0 0 MTNINVRNYIDESYGLFINNEFQASDSGETLTVSNPANGEDLAKVARAGKKDVDKAVQAA HDAFDSWSKISKEERADYLLEISRRIHEKTEHLATVESLQNGKPYRETSTIDVPQAANQF KYFASVLTTDEGSVNEIDQNTMSLVVNEPVGVVGAVVAWNFPILLASWKLGPALAAGNTV VIQPSSSTPLSLIELAKIFQEVLPKGVVNVLTGKGSESGDAIFHHEGVDKLSFTGSTDVG YGVAQAGAERIVPTTLELGGKSANIIFDDANLEQVIEGVQLGILFNQGEVCSAGSRLLVQ SSIYDELLPKLKEAFENIKVGDPFDEDTKMSAQTGPEQLDKIESYIKIAEEDDKANILTG GHRITDNGLDKGYFFEPTIIEINDNKHQLAQEEIFGPVVVVEKFDDEQEAIEIANDSEYG LAGGIFTTNLNRALNVAKAMRTGRIWINTYNQIPAGAPFGGYKKSGIGREVYKDAIKNYQ QVKNIFIDTSNQTKGLY >gi|224999844|gb|ACJC01000156.1| GENE 26 25152 - 25949 956 265 aa, chain - ## HITS:1 COG:SA2310 KEGG:ns NR:ns ## COG: SA2310 COG2514 # Protein_GI_number: 15928101 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Staphylococcus aureus N315 # 4 262 3 261 268 333 62.0 2e-91 MTNFHSIDATQVTNVTLNVKDLNKLTDFYSNVLGFSIEKQTNQQTVFNIGNLGYTLTLNE LNNGRQPEFREAGLFHVAYLLPTRSDLADFLYHANNHNIAMGGGDHLVSEALYFADPEGN GIEVYHDRPSEDWVWRDGFVKMDTLEVDVNDLMAQRSNEGWQGWPEEGKIGHLHLKTHNL ESAYDFYVEKLGFEHISNFPQALFMSTQKYHHHIATNTWQSNKIRTQNEQTYGLCHFDIY QPNANTTHVTSPEGFDITLHSNETK >gi|224999844|gb|ACJC01000156.1| GENE 27 26211 - 26492 508 93 aa, chain - ## HITS:1 COG:SA2309 KEGG:ns NR:ns ## COG: SA2309 COG2388 # Protein_GI_number: 15928100 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Staphylococcus aureus N315 # 4 93 5 94 94 126 76.0 8e-30 MAAEIKQGDHKFYVGDDENNPKAVITFKEVENNEIDIDHTGVSDELGGQGLGKKLVNRVV EHARENNLKIIASCPFAKNVLEKDDHAQDVYLG >gi|224999844|gb|ACJC01000156.1| GENE 28 26695 - 27606 767 303 aa, chain + ## HITS:1 COG:SA2194_1 KEGG:ns NR:ns ## COG: SA2194_1 COG0803 # Protein_GI_number: 15927984 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Staphylococcus aureus N315 # 2 303 18 322 330 251 46.0 2e-66 MLSGCSSFDHRKRESINDKNKMKVYTTVYAFQSLTQQIGGKYVDAQSIYPAGADLHSYEP TQKDMIDIAKSDLFVYSSHQLDPVAAKITNSMTNNSMKLALAEGLKQSDFIHSKDHDEDH EHHSHHEESNQDPHVWLDPVLNQKFAFMIKEKLIEKDPKHQAYYNKNYKIVNKDIVHIDQ QLQSITKNSKRDKVVISHDSLGYLAHRYGFKQQGVKGMNDEEPSQKEILNIVKDIQHSHA PYVLYEQNITSKITDVIKKETDTKPLSFHNLAVLTKEEQNDDSISYQSLMKKNIHVLNRA LNN >gi|224999844|gb|ACJC01000156.1| GENE 29 27677 - 29101 1575 474 aa, chain - ## HITS:1 COG:ECs2021 KEGG:ns NR:ns ## COG: ECs2021 COG1012 # Protein_GI_number: 15831275 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli O157:H7 # 5 473 9 478 479 362 38.0 1e-100 MTNQLFINNEFIESQSKETMDVINPATGEAFDTITLATEEEVNDAIEKSQQAQLEWERVP QPTRAEHVKLLIPLLEKNRDEIAQLYVKEQGKTLSQAYGEIDKSISFIDYMTSLSMSDKG RVLQNSIANETIQIINKPIGVTAGIVPWNAPILVLMRKVIPAIVTGCSVVIKPSEETTLL TLRLAELFRASTIPAGLIQIVPGTGETVGTQLASHKDIQLISLTGSMRAGKSVYENAAQT VKKVNLELGGNAPVIITSNADLDKAVDYIVTARINNAGQVCTCPERIFVHEDVHDDFLNK VTSKMKNLTVGDPFDENTDYGAIINQKQLDSIHEKVQDAIKNGATLMTGGHQLKRHGFFY APTVLDNVRKDDSVFKDEIFGPVLAITTYRNFEQVIEDANDTNAGLSSYIFSENLTEVMT ATERLKFGEVYANCEAEEVVNGYHAGWRESGLGGADGIHGFEEYYNTTVSYIRY >gi|224999844|gb|ACJC01000156.1| GENE 30 29348 - 30397 871 349 aa, chain - ## HITS:1 COG:SA2305 KEGG:ns NR:ns ## COG: SA2305 COG3949 # Protein_GI_number: 15928096 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Staphylococcus aureus N315 # 1 349 1 351 359 403 72.0 1e-112 MSNVKESIIVAFAFVGVVVGAGFATGQEIFQFFTSHGIYSIGGIFITGLIITLGGIFVLN TGFRLRSQNHSESIRYYLHPTIAKLFDIILTVFLFSLAIIMTAGGASTINESFGLPFWLS SLILVILILLTLFLKFDRLIAVLGGVTPFLVAVVVMIAVYYFITGDLNFSDASQYSNQNK SISPGWWFDAINYASLQIAAAFSFLTVMGGKLRYQSSTIYGGLIGGIIVTLLLLLINFGL VTEFNQIKEVALPSLLLAKQISPSIGIIMSVIMVLVIYNTVVGLMYAFASRFSRPFTKRY YILIVMMAIITFACTFVGFISLIGKVFPIMGLFGFILLIPVIYKGILRK >gi|224999844|gb|ACJC01000156.1| GENE 31 30745 - 32532 1499 595 aa, chain + ## HITS:1 COG:VC0689_1 KEGG:ns NR:ns ## COG: VC0689_1 COG0025 # Protein_GI_number: 15640708 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Vibrio cholerae # 1 421 1 414 414 216 32.0 1e-55 MSLELPVMLTIVLFLALGIFSQWLASRIKWPSIVVMAIVGLLVGPIFGLANPKEALGPEA FSSIVSLAVAIILFEGSSNLDFRELKGISKAVIRIITIGAGIAWILGAIALHITMSFPLS ISFVIGGLFLITGPTVIQPLLKQAKVKRNVDSVLRWESIILDPIGPIIALTAFYVFQIFE EGIGFVVIILFILKLLAAILIGFGAAFLFNWLIGQDKIPQSLMPPIQFVFILLTFSICDE ILSESGLLAVTIFGLMMARKKRHDLIFKESDHFIDNASSILVSTVFILITSSLTKDVLLN VLSWQLILFSLVMIILVRPISVLLSTLGTEITKKERAVVALMAPRGIVVLTVAQFFSSLF MDDKIPMAQYITPVTFGLVFITVVIYGFGFTPLSKLFGVASTEPPGVIIVGESEFSFHLG INLRDHGIPVMMFNLFENTSEKAHEAGFEVFKGNLLSSNDRIYSDLLRYNKCILMTQSFI FNSLAFNELVPEFGLNNVDMMPVSFNDEQARNNLNGPIRNHILFDENHTPRWFNQFITQH NIVEVPAEDYEKITENDMLIYHINEDKEVTFKRSNRDIPEYETGIYGILKNAYLT >gi|224999844|gb|ACJC01000156.1| GENE 32 32755 - 34719 1984 654 aa, chain - ## HITS:1 COG:SA2304 KEGG:ns NR:ns ## COG: SA2304 COG3855 # Protein_GI_number: 15928095 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 653 1 653 654 1127 86.0 0 MTHITESEMKEKYLDLLSQKFDSAEKLATEIINLESILELPKGTEHFVSDLHGEYESFQH VLRNGSGNVRAKINDIFKDKLSQQEINDLAALVYYPEEKLKLVKNNFDSIGTLNIWYITT IEQLIDLITYCSSKYTRSKLRKALPEQYVYIIEELLYKSNEFHNKKPYYETLVNQIIELE QSDDLIIGLSYTVQRLVVDHLHVVGDIYDRGPKPDKIMDTLINYHSVDIQWGNHDVLWIG AYAGSKVCLANLLRICARYDNLDIIEDAYGINLRPLLTLAEKYYDAENPAFKPKKRPDKD VSLTKREESQITKIHQAIAMIQFKLEMPIIKRRPSFEMEERLVLEKIDYDNNEITIYGKT YPLKDTCFQTVDPNNPAELLAEEKEVMDKLLLSFQQSEKLRRHMSFLMRKGKLYLPYNGN LLIHGCIPVNENGEMESFEIEGERLSGRDLLDVFEYHVRRAFDHKESTEDISTDLVWYLW TGKYSSLFGKRAMTTFERYFIEDKASHKEEKNPYYYLREDVDMIRKMLKDFGLNPDEGRI INGHTPVKEIDGEDPIKADGKMLVIDGGFSKAYQSTTGIAGYTLLYNSFGMQLVAHKEFN RKEKVLSMGADELSVKRVVDEELQRKKIRDTNIGKQLQDQIDILKILMHDRYLK >gi|224999844|gb|ACJC01000156.1| GENE 33 34893 - 35507 274 204 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 1 203 1 199 199 110 28 3e-23 MEQIITDFISKWGYTAIFILILLENVLPVVPSEIILTFAGLLSVKSHLSIWTLLIIATIA SFIGLLILYYICRLISEEKLYRFVDRHGKWMKLKSKDLKRANDWFKKYGAWAVFLCRFVP VLRVLITIPAGINRMNVIQFTTLSLIGTTIWNFALILLGRLLSDSFDALMNGIHTYSRIM YIIIIIAVIYFVIRYLMKRRRSVK >gi|224999844|gb|ACJC01000156.1| GENE 34 35615 - 36613 742 332 aa, chain - ## HITS:1 COG:BH1419 KEGG:ns NR:ns ## COG: BH1419 COG0476 # Protein_GI_number: 15613982 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Bacillus halodurans # 3 323 8 333 340 206 34.0 8e-53 MSRYERQTRFAPFGEEGQQKLSTSQILIFGAGALGSHIVDQLARMGAHHIAIVDMDIVEI SNLHRQTLFDEEDAHTLISKVEAIKHKVNQINTNVNLTTYDLEVTSSNIENLIKNVEPDI IIDGMDNFKIRYLINEVCHKHQIPWVYGAAVGSKGSVYGIDYQGPCLKCLLQTIPDTGES CAINGVLPPVISMIASYEVAEAVRYLSGKGFSKQLITIDAFNINYKSMNVDALKNKDCPV CEKHEYTLLESQQERTIEDLCGNAYLFRFPPKAFKHAAHFPGNMVKSTSFAKLIQYQTYE FTLFKDGRMNAYGIHNDEEAHHLYNTLLKSIR >gi|224999844|gb|ACJC01000156.1| GENE 35 36615 - 37382 880 255 aa, chain - ## HITS:1 COG:BS_yjbT KEGG:ns NR:ns ## COG: BS_yjbT COG2022 # Protein_GI_number: 16078234 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Bacillus subtilis # 1 252 3 254 256 322 64.0 5e-88 MFKIGNLELQSRLLLGTGKFENEEVQSKAIEASETNVLTFAVRRMNLYDRNLPNPLANVN LKDFITFPNTAGAKTAQEAIRIAEIASHAGVCDMIKVEVIGDDETLLPDPFETYEACKVL LEKGYIVCPYISNDLVLAQRLEKLGVHAVMPLASPIGTGRGINNPLNLSYIIENASVPVI VDAGIGSPKDACHAMELGADGILLNTAISAAKDPVKMAEAMKLGINAGRLSYEAGRIPVK YTAQASSPSEGLGFL >gi|224999844|gb|ACJC01000156.1| GENE 36 37384 - 37584 211 66 aa, chain - ## HITS:1 COG:no KEGG:SERP2072 NR:ns ## KEGG: SERP2072 # Name: thiS # Def: thiamine biosynthesis protein ThiS # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 66 1 66 66 109 98.0 3e-23 MKCIINGDLFTFDQDQSIQEVLHSLELDPKRVIVELNKELIKQDKYEEYTVREDDRLELL EIVGGG >gi|224999844|gb|ACJC01000156.1| GENE 37 37568 - 38686 1064 372 aa, chain - ## HITS:1 COG:BS_yjbR KEGG:ns NR:ns ## COG: BS_yjbR COG0665 # Protein_GI_number: 16078232 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Bacillus subtilis # 19 350 22 348 369 140 27.0 5e-33 MHDVLIIGSGVIGMSIARHLSATHLDVAVIDRDVPGKHASYKAGGMLGAQNEFTKDSDLF QLAIESRAMFPQLSKSLLDETGIDIQFKNSGLIKIANEHDDISSIRRQYQFLNSQDRSVK QLSDDDLLQLTHGEVKPSYAAIHIPHDGQINAHHYTLALLESLKLREIKRYASTEVTSIE RHNGYYSVKTNQSSTIEAHKVIVAGGAWSSQLLTQYHLQRQVIGVKGEVILLENNDLALT ETLFMTNGCYIVPKQPNRFLIGATSEFNNYSVGTTDEGMDWLLHHAYHRVPQLKDSHILK KWSGVRPYTEKEMPVMDQIDDGLYVISGHYRNGILLSPIIGRDIANWLLSGIKPSRYSSF TVTRRNNHEVYH >gi|224999844|gb|ACJC01000156.1| GENE 38 38679 - 39161 406 160 aa, chain - ## HITS:1 COG:BS_thiC KEGG:ns NR:ns ## COG: BS_thiC COG0352 # Protein_GI_number: 16080880 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Bacillus subtilis # 24 159 77 218 222 60 30.0 1e-09 MNNEENKDMIQSLLQLGFSKDKIIIHSDTTLLEELNLKRIHFKSNDTTAFAYKAAHPDIY VSMSTHDVETVKRCYENNLDYVFLGHIFPTASHPDTPPRSKKTIQQALDVPIPIYAIGGI NEHSIYKMPPGFKGICAISYFNNASLEEIKQLRKEWSTHA >gi|224999844|gb|ACJC01000156.1| GENE 39 39950 - 41224 1462 424 aa, chain + ## HITS:1 COG:SA2300 KEGG:ns NR:ns ## COG: SA2300 COG0477 # Protein_GI_number: 15928091 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 420 1 420 425 669 84.0 0 MKEKRSNVRWYFAIGFFFIGVIAYMDRSNISYIAVPMMKDLGLTKTQFGLLASFFSLGYA LMQVPSGMLAEKFGPRKMITVALVWWSAFTILTGMIKHHGLLYFIRFLFGVGEAPMYPSN AVFNSFWFAKNEKGRASSALLAGSYFGPVLAPIITIAIVNAFNWQAVFYIFGVVGILMAV LWAIIAKDLPEQHKMVNDAEKRFIIQNRDIVATEKSLPPWKRFLSHFSFYAIALQYFVVQ FVIALFLIWLPTYLTEQYHVNFKEMTISALPWLFMFFLILFAGAISDKILNTGQSRFVAR GVIAIAGFVVFSISIFLAVHTDNLYVTIFWLSLCLGGVGISMGMSWAAATDLGRNFSGTV SGWMNLWGNVGALISPLLAGIVVDHLGWSMTLQLLIVPAIIAAILWFFVKPDKPLVVSEE HVNK >gi|224999844|gb|ACJC01000156.1| GENE 40 41377 - 41667 515 96 aa, chain + ## HITS:1 COG:VNG6254C KEGG:ns NR:ns ## COG: VNG6254C COG1359 # Protein_GI_number: 16120179 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Halobacterium sp. NRC-1 # 1 88 1 88 101 67 38.0 6e-12 MIIINAKLKIDANKREDYLKLMKELVKNSRKEDGNLFYHHYEDVTEKNVFVVVENYKDEQ AVQAHNQSDHFKVFSDNISQYLIEEPQIDVSQPIQL >gi|224999844|gb|ACJC01000156.1| GENE 41 41829 - 43742 1678 637 aa, chain + ## HITS:1 COG:SA2299 KEGG:ns NR:ns ## COG: SA2299 COG1289 # Protein_GI_number: 15928090 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 28 631 1 603 607 704 61.0 0 MQQIINSLIHFDRSKIDIAKGIRQEFLMILPALIGYLLGFPMFGILISTGTLAHVYVFSG SPQSMLKTVITCSLSFTICMILGTLTVSQPILFGLLLLIVVTIPYYTFNALKIAGPSSTF FLVTFCLSINLPIAPEEALLRGSAILIGGILATITVILTIIFAKEKAEDRAIHADFKTLH NLLHHFDEPEDFKAYARNAVTEFRNSEKLLITSTSGGNGKLSKRFQKLILLHTSAQGIYS ELLELNENHIRPLPSDLVEMMDHIIKSVQQPKQYRPWSKVVDVAPEFQNLMDHILKIDEM IHANDNQIKYEADIRKPLYSKRIYQNLTFDSIVFRNALQYSVIMAVAIFIALAFNIQKAY WVPLSAHTIMLGNMTTIRTLDRSLARGIGTIIGTIVLSGILAFHIDPIFAIIIMGFSAMM TEAFVASNYAFAVIFITTQVIMLNGLASQNLNIEIAYTRIIDVLIGIAIAVIGIFILARK TASSMLSDAIAELVRKEGILFHYLFSKNKQETNERDRVESLNLNVKISNVTQIYNSANGE LFSNKEAVRYYYPSIFALEEISFMLERAMNNKHRQTINDDLMGEYLVVFENIAKHFQFQA DLNIRDMQPLPQYNYIRASLMNIQRNCAEQRQAITKD >gi|224999844|gb|ACJC01000156.1| GENE 42 43816 - 44229 669 137 aa, chain + ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 136 1 139 150 96 46.0 1e-20 MPWTMEDYPQSWKNFEELERKKAIDIGNAMLKDGYKESDVIPIATNQAEKWYQHASKEEL ETLKNKHITQHQEDESANPKLNEENVHVYYEDQLWKVKSTEAKRASDTFDTKSEAVNRAH HIAENKGTKVVEHRKDE >gi|224999844|gb|ACJC01000156.1| GENE 43 44493 - 45194 833 233 aa, chain + ## HITS:1 COG:SA2297 KEGG:ns NR:ns ## COG: SA2297 COG2357 # Protein_GI_number: 15928088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 229 1 229 230 348 79.0 4e-96 MYVERKPALYIEDLRDEFKNSLKHFKDDDEAFNTLVGFVELDHLYSSALKEISTKLSILD DNFNYQYKHNPIHHMERRVKEMHSLVKKLNRKGFEVSAQSAKENIMDIAGIRVVCNYLDD VYVIEKMLLRQEDVKLLKRKDYITHPKENGYRSLHIVVSIPVFLADSVEVTPVEIQIRTI GMDMWASLEHKIRYKNDTDTEKYKGLLEQCASEITNVESKMQQIHSEISNREK >gi|224999844|gb|ACJC01000156.1| GENE 44 45314 - 46231 718 305 aa, chain - ## HITS:1 COG:L125873 KEGG:ns NR:ns ## COG: L125873 COG0671 # Protein_GI_number: 15674037 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Lactococcus lactis # 5 279 6 284 307 168 40.0 1e-41 MVISKKLSLITIGILISILLISLLIDQPISHYFMNQNSIFGTLFQNYGLFPPTLILIIST VILNYYIFKTFKNKLAKTLTLILSFIFTLIKTNEFVSETAQYMLSTSENIKNHKPMGMAN NEGNAGNALSLGMSFFISLIILIIIAFICYQFWLKHTNNQELNHLFKVSLISFMILFIGL ELVDSLKHLWGRFRPYEITGKAGHFTHWLTINGNTGHSSFPSGHTGNGAFLMFIAFYFKK LRTQKIVFSIGLCYSILMALSRIRIGAHFTSDVTMSLLIMFSLMVIADFIINQVISRHKN KLSKD >gi|224999844|gb|ACJC01000156.1| GENE 45 46538 - 47413 1050 291 aa, chain + ## HITS:1 COG:no KEGG:SERP2063 NR:ns ## KEGG: SERP2063 # Name: not_defined # Def: esterase, putative # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 291 1 291 291 546 98.0 1e-154 MIKQNFTTKVYPLKQFEGEYSEVAYAGDSQADDVIVFIHGALLTYKIMTMFEPYFRDYKL IFINSPSRGKSTDLDRDTHTLDDYAARIYDVLTQIVKEQQIKELSIVGYSMGGMIATRLL KYNTLPVSHLIYLHSAAKITPDASMLARLFTSESKRAVLKDEIKAVKNLPQYILDKTIYA QKENALDLVQFIAPIKTIITDMIYTINTDYLPDIDEIKQFPKILFMSGKEDQIIPYTDSQ ATLEKFKALGGETKEVIYPGIGHIDFPSVLETQSDGQTGVVDEIKAWISKK >gi|224999844|gb|ACJC01000156.1| GENE 46 47499 - 48149 396 216 aa, chain + ## HITS:1 COG:SA2296 KEGG:ns NR:ns ## COG: SA2296 COG0789 # Protein_GI_number: 15928087 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 215 1 215 254 158 42.0 6e-39 MSIYTSGDIAHKCHVSTRTIQYYDKQEILSPNYTSETNRRFYTDKEVEKLELILFLKEIG CTIKEIKVLLQEDSSMKTLYTLLQIKKHEIQQSITVKENKVRKIEQIQRYVHQNSISPIY YLQDIATYMEESHRRKYVRKKLWLSIALIGSLQYGGLITSIVTKRKKPFLSMMPVVAMYS LWLTKKYKKNVSYVCPNCHHVFNPSVIKFVTASHTP >gi|224999844|gb|ACJC01000156.1| GENE 47 48373 - 49731 1498 452 aa, chain - ## HITS:1 COG:SA0325 KEGG:ns NR:ns ## COG: SA0325 COG2271 # Protein_GI_number: 15926038 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar phosphate permease # Organism: Staphylococcus aureus N315 # 3 451 2 450 452 736 86.0 0 MFNFLKPARHIKSLPSEKIDDTYKRLRFQVFLGIFIGYAGYYLLRKNFSLAMPSLIEQGF SKGELGIALSAVSIAYGFSKFVMGTVSDRSNARMFLTLGLVLTAIINLLLGFIPFFTSSI TIMFIMLFLVGWFQGMGWPPSGRVLVHWFSVSERGSKTSIWNVAHNVGGGLMAPIATWGI SMTALYNFGYLKGFEGVFIYPALLAIIIAIFSYILIRDTPQSQGLPPIEQYKNDYATSTK QTIETELTTKEILFKYVLNNKWVWAIAFTNIFVYFVRYGVLDWAPTYLSEEKHFDLSASG WAYFLYEWAGIPGTLLCGYLSDKLFKGRRGPAGFFFMLGVTIFILIYWLNPPGHAWLDNL SLIGIGFLIYGPVMLIGLQALDYVPKKAAGTAAGLTGLFGYLFGAVMANIVLGFVVQHFG WHIGFVLLTVISILAMLCFILTWNKRGQEQID >gi|224999844|gb|ACJC01000156.1| GENE 48 50135 - 50779 689 214 aa, chain + ## HITS:1 COG:SA2295 KEGG:ns NR:ns ## COG: SA2295 COG1802 # Protein_GI_number: 15928086 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 213 13 225 226 289 74.0 2e-78 MTSGQVIAAELRLGIVNGEIESHIQLSENQVAQQFNVSRSPVRDAFKLLQTDQLIQLERM GAQVLPFGDQEKKEMYDLRLMLESFAFSKLSGTDTQHIVKEMKKQLEMMKVAVQFEDAEA FTQHDFEFHEVMIQATNHQYLKVFWNHLKPVMESLILISMRQRMANDPKDFERIHSNHQV FIDAVENDDASILRKAFHLNFDDVGENIEAFWLR >gi|224999844|gb|ACJC01000156.1| GENE 49 50802 - 52343 1606 513 aa, chain + ## HITS:1 COG:SA2294 KEGG:ns NR:ns ## COG: SA2294 COG1070 # Protein_GI_number: 15928085 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Staphylococcus aureus N315 # 1 513 1 513 517 846 76.0 0 MKYMIGVDMGTTSTKAVLYDEKGKFIMKHNIGYDLHTPNVDVSEENPDEIFDAVLMTVKY IVRESGIAKEDIKFISLSAQMHSLIAMNADNQRLTENITWADNRANDYADLIEKSYGGFE LYQRTGTPIHPMSPLSKIFWMRHEEPEIFKQTTMFADLKTYVLFQLYERFVIDYSLGSAT GMMNLEQLDWDHKALELLGIEKNQLPQLVPTTHVLTGMKKRYATLMGIDEQTPVIVGASD GVLSNLGVNSYQKGEVAVTIGTSGAIRTVINQPKTDEKGRIFCYILDKDQYVIGGPVNNG GVVLRWLRDEILASEVETAKRLGVDPYDVLTQIASRVKPGAEGLIFHPYLAGERAPLWNA DARGSFFGLTLSHKKEHMIRAALEGVLYNLYTVYLALIEVMNETPTTIKATGGFAKSEIW RQMMADIFDTDLIVPESYESSCLGACVLGMKALGEIDDFSVIKDMVGTTHAHEPNQETVA IYQQLVTIFINISRSMTENYSDIANFQREHLSD >gi|224999844|gb|ACJC01000156.1| GENE 50 52393 - 53751 1740 452 aa, chain + ## HITS:1 COG:SA2293 KEGG:ns NR:ns ## COG: SA2293 COG2610 # Protein_GI_number: 15928084 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Staphylococcus aureus N315 # 1 452 1 452 452 645 88.0 0 MFGEIWPLISVVLGIIILLTLIIGLKLNTFISLIITSMITALLLGMPLNKIMETIENGMG STLGHIALIFGLGAILGKLLADGGGATRIADTLIAKFGQKHVQWAMLIAAFIVGIALFFE VGLVLLIPLVFTVAKRANVSILKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANIGEVL LYGMIIAIPVTLISGPLFNRFAQKMVPTAYTREGDISSLGTQKEFKEEEMPGFGISLLTA MLPVILMLISTIVQLITGHEEATNVFEQIVYFIGTAGTAMLIAVIFAIFTMGTKQQRKME DIMKSVTQAIYPIGMMLLIIGGGGTFKQVLIDGGVGDTIAKMFEGTSMSPILLAWIVAAV LRISLGSATVAAVSTTGIVLPLLEHSDVNVSLVVLAIGAGSVILSHVNDAGFWMFKEYFG LTVKETFLTWSLLETIISVSGILFILFISLFV >gi|224999844|gb|ACJC01000156.1| GENE 51 54084 - 54866 1066 260 aa, chain + ## HITS:1 COG:SA2288 KEGG:ns NR:ns ## COG: SA2288 COG1210 # Protein_GI_number: 15928079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Staphylococcus aureus N315 # 1 260 29 288 288 422 83.0 1e-118 MLPILDKPTIQYIVEEASKAGIEDIIIVTGKHKRAIEDHFDNQKELEMVLENKGKADLLE KVQYSTDLANIFYVRQKEQKGLGHAIHTAKQFIGNEPFAVLLGDDIVESDTPAIKQLMDV YEETGHSVIGVQEVPESDTHRYGVIDPSAKEGSRYEVRQFVEKPKQGTAPSNLAIMGRYV LTPEIFDYLETQQEGAGNEIQLTDAIERMNSKQQVYAYDFEGNRYDVGEKLGFVKTTIEY ALKDPEMSQDLKAFIKQLDI >gi|224999844|gb|ACJC01000156.1| GENE 52 55080 - 56720 1733 546 aa, chain - ## HITS:1 COG:SA2279 KEGG:ns NR:ns ## COG: SA2279 COG1109 # Protein_GI_number: 15928070 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Staphylococcus aureus N315 # 2 545 41 583 583 709 65.0 0 MKNNWIDVLDESLVKDFYNNQTSEEQQEGLNTTLSFGTAGIRGKFGLGEGRLNKFTVSKV ALGFAHYLTSSIAHPVVVIHYDTRHLSPEFAQIIANILASLDIKVYLADTYRTTPDLSFA VRYLQADAGVMITASHNPKDYNGIKVYGEDGAQLSTDDSARLSTYIDKLGHPLHINLPSL TTEQQSLIHSVPSEVREDYFKNVQDLVGTIPQSDLKVVFTSLHGTSVPVVPDILSSLNFN QFELVASQCEPDSDFSSVASANPEDHKAFDQSIELANHIDADLLIGTDPDADRLGIVELD AEGNIHYYNGNQIGALLLNYRIKQTEGLSNRIMFQSIVSGGLAKSLAQYHNVNFKEVLTG FKYIAAEIRHLSPEQNFIFGYEESYGFLARPFVRDKDAIQIVPLMIKYAAELKNKGRMLK DELEDITRNVGNFNDKLFSHTFEGTQGKAKIENIMTQFRSETPSEMCGLKVIAIEDFETG KKTDLQNDEVSDITLPKANVIKIYFNEGFIALRPSGTEPKIKLYVSLSCDHFDVVAQKMN DAIFNS >gi|224999844|gb|ACJC01000156.1| GENE 53 56938 - 58428 1230 496 aa, chain + ## HITS:1 COG:SA0522 KEGG:ns NR:ns ## COG: SA0522 COG0438 # Protein_GI_number: 15926242 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 1 468 1 458 490 136 28.0 1e-31 MIYTVTSTLPLVHGGRTKSLLTRIRFLDKEMGIHNKILTTNYNANYNEVYQKFEENQLIT KNTQIENIYDWLSDFKLLSIPKSRFKKKTLYSEKDRDIEGLTSKAFNDGNVMRYYDQETY VLYRKFYEDTNIIEFEDVMSPISKKKIERREYNHFGQLHRKIYFSSRTYHKILEEYFDTE GSIYCKKFFNSQKANELDFIQIFKNQRIMKAFKNEKDLFKYYFEHRFKQNDIVFNDARLL DKPLLNNCMNTKNVLVFHNSHIDGDNIKSSYKIALENSDKVAQYLLLTHMQKDDIQHAYG ISDEKISIVPHFIKSYGQQDTQDKEDRFVFIGRLGKQKQVDHLIKSYNQFLKYGHQTKLA IYGADEQNQKQVILDLVKEYQIEDKVDLNDFTKHPLEEFKKSKASLLTSEYEGFGLTVME SIEVGCPVIAYDVRYGPGEIIEHGENGYLVEPDNIEAFAAYMDKIIKNPLTKVETKNALK YEQAKNNYQKLFERVK >gi|224999844|gb|ACJC01000156.1| GENE 54 58696 - 59094 464 132 aa, chain + ## HITS:1 COG:SA2278 KEGG:ns NR:ns ## COG: SA2278 COG0494 # Protein_GI_number: 15928069 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 3 131 1 129 130 194 78.0 4e-50 MKLKKEINVVGAIIYSDNKILCAQRSENMSLPLKWEFPGGKIENGETEKDALIREIKEEM KCDLIVGDKVTTTTYEYDFGIVNLTTYKCKLNNKKPTLTEHKEIKWVGKNELDKLEWAPA DVPAVRRIIEEN >gi|224999844|gb|ACJC01000156.1| GENE 55 59096 - 61954 2023 952 aa, chain + ## HITS:1 COG:SA2276 KEGG:ns NR:ns ## COG: SA2276 COG1061 # Protein_GI_number: 15928067 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Staphylococcus aureus N315 # 458 952 1 495 496 604 64.0 1e-172 MSNLIQDIKQSLYKGFIDKDSSHKGNFVPRLLVNNKEENVLSTIIDQLHNCQSFCISVAF ITESGLASLKSHFYDLSKKGVKGRIITSNYLGFNSPKMFEELLKIENVEVKLTNIEGFHA KGYIFEHHNHTSFIIGSSNLTSNALKLNYEHNLFLSTHKNGDLVNNIKYKFDELWDSSFS LTDEWIKEYKQSFEYQSLQKVFDNTAVQNSDIKKFNESKLIKPNLMQEHALKSLESLRNV GEEKGLIISATGTGKTILCALDVRAYSPDKFLFIVHNEGILNRAIEEFKKVFPYEDESNF GLLTGKRKDHDAKFLFATIQTLSKKENYKLFNSNHFDYIVFDEAHRTAASSYQKIFNYFK PNFLLGMTATPERTDELNIFELFNYNIAYEIRLQEALESNILCPFHYFGVTDYIQNEMSQ EDAFNLKYLASNERVEHIIKKTNYYGYSGDALKGLIFVSSREEAYQLANQLSKRGISSVG LTGKDSIAYRTETIQQLKEGSINYIITVDLFNEGIDIPEINQVVMLRPTKSSIIFIQQLG RGLRKSNNKEFVTVIDFIGNYKTNYMIPIALSGNKSQNKDNYRKFLTDTTVLNGVSTINF EEVAKNKIYNSLDSVKLNQPKLIKEAFNNLKDRIGKLPLLMDFINNDSIDPSVIFSRFKN YYEFLIKNKIIENELSINEFKNLTFLSRQLAPGLKKVDIDVLKEVIQNDVTYENLTKKML NINNDISEYDINTSLSILDFTFFKKTIGKTYGLPLIQYKDNLICLGNEFKEALNKSLFNT FVHDLIDLANYNNDKYQNKKNSLILYNKYSREDFVKLLNWDKDESGTINGYRMKHRTLPL FITYDKHENISDNTKYDDEFLSQDELKWYTRSNRKLTSPEVQNILKHEENNTDMYIFVKK RDDEGKYFYYLGKAKYINGTEKQDYMPNGNSVVTMHLSMNTSIRDDIYRYIT >gi|224999844|gb|ACJC01000156.1| GENE 56 62106 - 62297 245 63 aa, chain + ## HITS:1 COG:no KEGG:SERP2051 NR:ns ## KEGG: SERP2051 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 63 1 63 63 107 100.0 1e-22 MRNAIEELIFSDVSSYDIYVNTGVNQGLVGDIKDGYLTIDSIPYIDAERLYYYSLERKAL VTS >gi|224999844|gb|ACJC01000156.1| GENE 57 62580 - 62879 278 99 aa, chain - ## HITS:1 COG:no KEGG:SAR2568 NR:ns ## KEGG: SAR2568 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 90 1 90 93 104 63.0 9e-22 MSFYERVLKLSENNHRTAFEFRFEELFSKEEWCALSLAERQEQEKAFRCEVNKRDDIRIP FSSENDAKNKLYNIVYAYNSVKKNFKQAEHSRNPRGRNV >gi|224999844|gb|ACJC01000156.1| GENE 58 63092 - 63784 199 230 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 10 195 8 197 259 81 28 2e-14 MTKLKEKVAVVTGASSGIGEAIAKKLSQQGASIVLVGRNEQRLNEIAQQLNTPAKVVSAD VTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNIKGTIHVLQ ATLPYLLKQSSGHIINLASVSGFEPTKTNAVYGATKAAIHAITQSLEKELARTGVKVTSI SPGMVDTPMTEGTDFGERKKLEAQNIADAVVYALTQPSRVNVNEVTIRPV >gi|224999844|gb|ACJC01000156.1| GENE 59 63873 - 65129 1649 418 aa, chain + ## HITS:1 COG:BH2678 KEGG:ns NR:ns ## COG: BH2678 COG0624 # Protein_GI_number: 15615241 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Bacillus halodurans # 4 408 13 421 427 463 55.0 1e-130 MGYQLDKRQFEILDMLVKFNTESPPGRNTDPLQDEIETLLKQLDFSIQREQLYDNDSVIV ATLKGHNPQAPKLILNGHVDVASVDDDQYWQYPPFKLTNKDEWLYGRGVSDMKGGMSSLF YVLEQLHQEGLRPEGDIIVQSVVGEEVGEAGTKRACEIGPKGDLALVLDTSENQALGQGG VITGWITVKSKNTIHDGARSQTIHAGGGLFGASAIEKMTKVIQSLNELERHWAVMKKSPG MPPGANTINPAVIEGGRHPAFIADECRLWITVHYLPNESYESVVDEIEKYLNKVAEADVW LRENPLEFEWGGTSMIEDKGEIFPSFTVPTHHPGFKQLEKAHEYIHNKKLEHGMSTTVTD GGWTAHFGIPTILYGPGSLEEAHSVDEKIKARELAQYSDVLYTFLKEWYAHPQSYKSS >gi|224999844|gb|ACJC01000156.1| GENE 60 65296 - 67461 1803 721 aa, chain - ## HITS:1 COG:BH1392 KEGG:ns NR:ns ## COG: BH1392 COG0855 # Protein_GI_number: 15613955 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Bacillus halodurans # 9 689 13 701 705 756 56.0 0 MQTRLGEKDINLPQYYNNRELSWLDFNYRVLQESYDKNNPLLEKLNFISIFSSNLDEFFM VRVAGLKDQVKMGYDKPENKAQMTPQEQLDAIKIKNTDYVNTQYQRYNELIKELANYDIE MVKPEDLSDALIEKLEQEFKLSVLPTLTPLGIDAYHPFPKLNNKSLNIFVDIDTEDAINS AIVQIPSLIPRFLTLNEGTKQYVVMVEDVITYFINYLFTGYEVLNTFTFRITRNADLTIH EDGAEDLLIEIERFLKERKSGSAVRLELDCRTSEKENVEWLINQLEIEDNDIYYLDGPLD LTFLFGLVDHLSHKLKYLTYDKYTPQPPKSLGNKNIYQLSLERDIFFHHPYESFEPIVDF IRQAADDPNTIAIKQTLYRVSKDSPIINSLKEAAENGKQVTVLVELKARFDEENNVHWAR MLEDAGCHVIYGMTHLKTHSKIALVVKRINNELTSFVHLGTGNYNDKTAKLYTDMGIITT NKDIAEDAINFFNYLSGYSTKPEYNKLIVAPYDIRDVFIDRIDKEIRSHLQHGNGKIMMK MNSLTDKTIIEKLFEASQAGVKIQLIIRGICCLKPGIPGISENIEVVSIVGRLLEHSRIY YFHNNGEAHIYLSSADVMTRNMIKRVEILFPVEDKSIGQRLVNYMNLQLSDNQKGRYQEA QGVYHYVENNSSPLNSQSYLMQEAIKYGEELKKQSVQPSGQPVHSRRGGSWMRKLKNTFK R >gi|224999844|gb|ACJC01000156.1| GENE 61 67524 - 69056 1442 510 aa, chain - ## HITS:1 COG:BH1393 KEGG:ns NR:ns ## COG: BH1393 COG0248 # Protein_GI_number: 15613956 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Bacillus halodurans # 3 507 4 511 518 309 34.0 8e-84 MEERIGLIDIGSNTIRLVIFGYNKKTGLNEILNIKTPARLSQYLTKSNEMNDEGIHVLKE TLSSFRKVADKFKVDALYPIATAAIRQSKNREAIIKEIKQDIHIEIQIVPEEDEAFYGYY AITHTTDIENGISVDIGGGSTEVTLFKDKQLKESHSFPFGVVSLKRQFFGDKEHNDKTAI KNMEQFLREQFSQLDWLSNQHIALVGVGGSARNVARIHQSAHAYPIGGVHNYTMTSKDIN NVYDLIRKSSRDELTNLDGLSRDRVDIILPAISVFKTLFKKIDATQFTFSRKGIREGFIM NHISKRYPDEFNKSHVRKDALRHLANEYHIEETSANRRVKLAESLLNQIISERSLNISEI EKELFIEGAYIYYLGSFIDSDSSSPHTYYLIANSMINGFSHKDRVKLALLASFKNKSLLK FYCKETQWFSNKEIDTIQALGGIIKFANTLNISHTSFVEEVKLKAKKDDKYDLIVYYKGS PIAEEYQANRQKKHIEKILKGKVSIIFTKS >gi|224999844|gb|ACJC01000156.1| GENE 62 69373 - 70191 214 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 4 250 1 238 242 87 26 3e-16 MERLENKIAVITGASTGIGKASAVALAKEGAHVLALDISDQLEETVQSINDNGGKATAYR VDISDDKQVKQFSEKIAQDFGHVDVIFNNAGVDNGAGRIHEYPVEVFDKIMAVDMRGTFL VTKFLLPLMMKQGGSIINTASFSGQAADLYRSGYNAAKGGVINFTKSIAIEYGRENIRAN AIAPGTIETPLVDNLAGTSDEEAGQTFRENQKWVTPLGRLGTPDEVGKLVAFLASDDSSF ITGETIRIDGGVMAYTWPGEMLSDESWKNSTK >gi|224999844|gb|ACJC01000156.1| GENE 63 70383 - 70571 190 62 aa, chain - ## HITS:1 COG:no KEGG:SERP2044 NR:ns ## KEGG: SERP2044 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 62 1 62 62 100 98.0 1e-20 MFSTGNKAKKTIFGAMTCSKCGKTLNNDENITIKINTKELKGYTHLSSWADAQYKLCEIC SE >gi|224999844|gb|ACJC01000156.1| GENE 64 70588 - 71664 1211 358 aa, chain - ## HITS:1 COG:SA2244 KEGG:ns NR:ns ## COG: SA2244 COG1363 # Protein_GI_number: 15928034 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 560 78.0 1e-159 MPESKALLKSLTDVNGISGHEMQVKSLMKDYLTPVSDEIVEDRLGGIFGKKNATHGTKSL MISGHLDEIGFIVTQIDEQGYIYFTPIGGWWNQVMLSQKVTITTENGKEIRGIIGSKPPH ALSPEERKKPVDIKNMYIDIGVGSKEEAKEAGIELGNMITPYSEFESLANDKYLTAKAFD NRYGCALAVDVLQQLKDENIDINLYAGATVQEEVGLRGAKVAANLIKPDLAIAVDVGVAY DVPGMTSEKNEGKLGDGPLAILMDATSIAHDGLRKHIKDVAEHHNIPVQWATTPGGGTDA GSIHVANEGIPTITIGVPLRYMHSNVSVLNIDDYTNSVRLITEIVRSLNDDSYQALMW >gi|224999844|gb|ACJC01000156.1| GENE 65 71848 - 72315 636 155 aa, chain + ## HITS:1 COG:SA2247 KEGG:ns NR:ns ## COG: SA2247 COG4808 # Protein_GI_number: 15928037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 153 1 150 151 127 57.0 1e-29 MKKVISLLVVIVISAVSLSACGKERTKTYEGEVNGKQVITSLTYKDDEVLKQSTIATVKY DDLGITKDEAKQMFKNDEQAFKGIEGVTYKADFKDRKAIEHIDIDYKDADIDQLKKNLGF ISSDAKKGDHVSMDRVVKQLKRNGLKDKSKMNEDN >gi|224999844|gb|ACJC01000156.1| GENE 66 72368 - 73945 1564 525 aa, chain - ## HITS:1 COG:SA2248 KEGG:ns NR:ns ## COG: SA2248 COG0069 # Protein_GI_number: 15928038 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Staphylococcus aureus N315 # 1 525 1 525 525 867 78.0 0 MSVLTVMQFIVNIIIMIVLLTIMIFGVIWLFKDKGQNQHSVLRNFPVLGRIRYISEKIGP ELRQYFFANDNEGKPFSRSDYKNIVLAGKYKSRMTSFGTGKDYEEGFYIQNTMFPLQATE LHIDHTEFISTFLYHIENERLFSREEYRKSAQVDPFFLTDEHAVVLGSNLKHPFKIKRLV GQSGMSYGALGKNAITALSMGLAKAGTWMNTGEGGLSEYHLKGNGDIIYQIGPGLFGVRD HDGNFNRDMFINLAKHNNVRAFEIKLAQGAKTRGGHMEGNKVTEEIARIRNVKPYETINS PNRFDFIKNPTDLLNFVNRLQSIGQKPVGCKIVVSKVEEIETLVKTMVEIDIYPSFITVD GGEGGTGATFQELEDGVGLPLFTALPIVSSMLEKYGIRDKVKIFASGKLVTPDKIAIALG LGADLVNIARGMMISVGCIMSQQCHLNTCPVGVATTDPKKEKGLIVDEKQYRVTNYVTSL HEGLFNIAAAVGVHSPTEITSDHIIYRQLDGTTTSIQDYKLKLIS >gi|224999844|gb|ACJC01000156.1| GENE 67 74090 - 74872 627 260 aa, chain + ## HITS:1 COG:SA2106 KEGG:ns NR:ns ## COG: SA2106 COG1266 # Protein_GI_number: 15927893 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 39 235 20 221 245 70 30.0 2e-12 MDIKQSSEKQGRPYHLSDSGTVLKRNFILIPAYILLQSIVPIIVVFGSLGITAMITQQAP PQWLYHFSLSLSFVIAQGLILVIFYKMHQSVINDVMKQQWIVAKNKIIKIVIVAIVVYLL LLIVRVIGTALPNHLSYHLTQYEQRTLGLFKSPYVLLVTFISMVFLRPMVEQIIYRYLII HELGKVWNRQFVIGLSIVIETIVHVYDMASIFEILPYIVIASAATILYIKSRDNLIVAYI FQVILQCILFIEILSKYTNF >gi|224999844|gb|ACJC01000156.1| GENE 68 75191 - 75670 400 159 aa, chain + ## HITS:1 COG:SA2106 KEGG:ns NR:ns ## COG: SA2106 COG1266 # Protein_GI_number: 15927893 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 12 159 89 236 245 106 44.0 2e-23 MITTAMTKIKELKKYIPLLIICALSTEIFTSLWEYSIDFLPEQYQYYETVNEEGIEELFT HTWITPILFIDIVIFTPIIEELLFRHLIIHELGKKLTYGLMYIVSVVGFTYFHCTDAVSP FEAGPYFIAAVVFVIGYHFSHRNLAVPIALHMITNLIAF >gi|224999844|gb|ACJC01000156.1| GENE 69 75966 - 76628 231 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 14 210 17 219 223 93 30 3e-18 MLLKVEHLTYKVDNRTILDDINLNINKGDTIAIVGPSGSGKSTLLKQLNHLISPTSGDLY LNDQSYFDYKPEEIRTRVSYLMQQSELIGYTIEDNMKFPAEARNEAYDRDKAKQLISQVG LGNYQLDAQFEHMSGGEQQRITIARQLMYEPEVLLLDEATSALDTHNKKKIEEIIFKLAD KGIAILWITHSDDQSMRHFKRRITITDGKISSDEELNGNE >gi|224999844|gb|ACJC01000156.1| GENE 70 76621 - 77397 766 258 aa, chain + ## HITS:1 COG:SA2242 KEGG:ns NR:ns ## COG: SA2242 COG0390 # Protein_GI_number: 15928032 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Staphylococcus aureus N315 # 1 258 1 258 258 387 87.0 1e-107 MSNTALCLTALLLLIPIFISYKEGLHIIKDLVIATIRATIQLLILGFLLHYIFEINEKWL LVLCVLVIIINASWNTISRASPVMHHVFWISFVAIFVGTALPLAATVATGAIKFTANEVI PIGGMLANNGLIAINLAYQNLERAFVQDVSDIESKLTLAATPKLASKSSIRESIRLAIVP TIDSVKTYGLVSIPGMMTGLIIGGVDPLQAIKFQLLVVFIHTTATIMSALIATYMSYGQF FNARHQLIARTQRTRQSS >gi|224999844|gb|ACJC01000156.1| GENE 71 77531 - 78709 1074 392 aa, chain + ## HITS:1 COG:SA2241 KEGG:ns NR:ns ## COG: SA2241 COG2814 # Protein_GI_number: 15928031 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Staphylococcus aureus N315 # 1 392 1 392 395 493 76.0 1e-139 MTVARTTTFILSVFIVGMVEMMVAGIMNLMSQDLHVSEAVVGQLVTLYALTFAICGPLLV KLTHRFASRSVLLWALIIFIFGNGLIAIAPHFAIIVVGRILSSAAASLIIVKVLALTAML TSAKNRGKMIGIVYTGFSGANVFGVPIGTVIGDWVGWRFTFLFIIVVSVFVGILMLIYLP KEDELSHPNQTLRSASIESQTGSSVIRPREVIKYLMITFLVLVANSVTFVFINPLILSNG HEMSFVSLALLVNGVAGVIGTSLGGVLSDKFTSKRWLIISISIFIIMMIILNLLLPGTGL LLVGLFMWNLMQWSTNPAIQSGIIEHVEGDTSQVMSWNMSSLNAGIGVGGIVGGLVMTHL SVEYVTYTSALIGLISLIIVLTLKNRHYAKNL >gi|224999844|gb|ACJC01000156.1| GENE 72 78792 - 80147 1013 451 aa, chain - ## HITS:1 COG:SA2240 KEGG:ns NR:ns ## COG: SA2240 COG2272 # Protein_GI_number: 15928030 # Func_class: I Lipid transport and metabolism # Function: Carboxylesterase type B # Organism: Staphylococcus aureus N315 # 11 451 10 450 450 439 51.0 1e-123 MVQVKIGNCTINGLHKKNIDVFLGIPYAKPFNKISRFQHSKLMELTKPMIDATHIQSIPP QPYNSLEDFFSMTDSSFNSFKQNDYCLFLNIWKPSSNQNHLPVVIYFYGGSFLQGHGTAE LYCPEHIVEQENIIVVTFNYRLGALGYLDWSYLNQHLNYNNGISDQINVLKWVHQYIEHF GGDPNNVTLIGQSAGSMSIMTLMQMPELDDYYHKVMLLSGTLTTDTPRNAHTKVQHFSQL MRHYFPNKTLKTLTSDDILYLMESQKIERGRSRGLDLIYQPIKDHHMSRSIKKFSKPTFM SYTHDEGDIYIEDATRTLPSERFIHLMTQYGAHVEKIDVITMKQQRNLITEHCFVRPTYL FLNQMNNCDTWLARFDWHQPHTSYFKSAYHILDLVFWFGHLSILTKNHYSVTQHDMNLSR NMISDLAYFARKGRMPWKCYEPHHQALHIYK >gi|224999844|gb|ACJC01000156.1| GENE 73 80469 - 82148 1524 559 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 3 544 2 544 545 837 85.0 0 MKNKNKSKSNKISLSQLVLLGLGSLIGSGWLFGAWEASSMAGPAAIISWVIGFLVIGTIA YNYIEIGTMFPQSGGMSNYAQYTHGSLLGFIAAWANWVSLVTIIPIEAVSAVQYMSSWPW DWAKPMGSLMKDGSISTYGLIAVYIIIAIFSLLNYWSVKLLTSFTSLISVFKLGVPILTI IMLLVSGFDTGNYGHSIGTFMPYGSAPIFAATTTSGIIFSFNAFQTIINMGSEIKNPEKN IARGIVISLTLSAILYIVLQSTFITSMPSSMLHEHGWSGINFNSPFADMAILLGLNWLAI LLYMEAVVSPFGTGVSFVAVTGRVLRAMEENGHIPKFLGKINKKYNIPRVAIAFNAIISM VMVTLFRDWGTLAAVISTATLVAYLTGPTTVISLRKMAPKMTRPFKANILKFMAPLSFVL ASLAIYWAMWPTTAEVILIIILGLPIYFFYEYKMNWKNTKKQIGGSLWIIIYLIVLAFLS FIGSKEFKGLNWIHYPWDFLVIVIVALIFYQLGTTSYFESIYFKRANKLNKKMGDKLRKT RKKARHKDWKERDRQEQNQ >gi|224999844|gb|ACJC01000156.1| GENE 74 82332 - 82928 631 198 aa, chain + ## HITS:1 COG:SA2238 KEGG:ns NR:ns ## COG: SA2238 COG4430 # Protein_GI_number: 15928028 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 198 4 199 199 249 74.0 2e-66 MNKQKNEQVDQFLAKESQWQDCYKFLRNLIFNETELEENYKWMHPCYTINNKNVVLIHGF KDYVALLFQKGAILEDKYHTLIQQTERVQAARQLRFNSLEEIEKRKDEIKYYLNEAIKTE KAGKNVPMKKNEDYEVPEELQQKFEEFPRLKEAFYQLTPGRQHQYLYYFSQAKRSQTRYN RIDKYINAILQGKGMNDK Prediction of potential genes in microbial genomes Time: Sun May 29 08:08:10 2011 Seq name: gi|224999843|gb|ACJC01000157.1| Staphylococcus epidermidis W23144 contig00201, whole genome shotgun sequence Length of sequence - 21749 bp Number of predicted genes - 18, with homology - 18 Number of transcription units - 10, operones - 4 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 36 - 1088 1475 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 1326 - 1385 10.6 2 2 Op 1 24/0.000 + CDS 1578 - 2834 1514 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 3 2 Op 2 13/0.000 + CDS 2837 - 3472 839 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 4 2 Op 3 13/0.000 + CDS 3489 - 4433 876 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 5 2 Op 4 . + CDS 4433 - 5128 818 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 5169 - 5212 0.3 - Term 5204 - 5251 12.6 6 3 Op 1 23/0.000 - CDS 5310 - 6011 839 ## COG1346 Putative effector of murein hydrolase 7 3 Op 2 2/0.000 - CDS 6015 - 6473 443 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 6544 - 6603 5.1 8 3 Op 3 9/0.000 - CDS 6608 - 7366 895 ## COG3279 Response regulator of the LytR/AlgR family 9 3 Op 4 . - CDS 7347 - 9122 1557 ## COG3275 Putative regulator of cell autolysis - Prom 9170 - 9229 10.2 + Prom 9421 - 9480 8.1 10 4 Op 1 2/0.000 + CDS 9546 - 10946 1426 ## COG0477 Permeases of the major facilitator superfamily + Term 11007 - 11047 9.0 + Prom 11278 - 11337 5.5 11 4 Op 2 . + CDS 11365 - 12297 942 ## COG1893 Ketopantoate reductase + Term 12378 - 12430 16.2 - Term 12366 - 12418 14.3 12 5 Op 1 . - CDS 12423 - 13259 562 ## COG0706 Preprotein translocase subunit YidC - Prom 13290 - 13349 5.9 13 5 Op 2 . - CDS 13400 - 14896 954 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 15088 - 15147 7.9 + Prom 15112 - 15171 5.7 14 6 Tu 1 . + CDS 15221 - 17050 1539 ## COG0531 Amino acid transporters + Term 17071 - 17103 -0.6 - Term 16932 - 16965 1.6 15 7 Tu 1 . - CDS 17199 - 18575 997 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 18687 - 18746 8.6 + Prom 18756 - 18815 7.5 16 8 Tu 1 . + CDS 18893 - 19702 641 ## COG1409 Predicted phosphohydrolases + Term 19715 - 19776 16.2 - Term 19706 - 19761 16.1 17 9 Tu 1 . - CDS 19765 - 20373 468 ## COG4990 Uncharacterized protein conserved in bacteria - Prom 20506 - 20565 8.1 18 10 Tu 1 . - CDS 20680 - 21711 769 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|224999843|gb|ACJC01000157.1| GENE 1 36 - 1088 1475 350 aa, chain - ## HITS:1 COG:BS_ydjL KEGG:ns NR:ns ## COG: BS_ydjL COG1063 # Protein_GI_number: 16077691 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Bacillus subtilis # 1 346 1 346 346 251 45.0 1e-66 MKAAVWYGQKDVRVEDREPKVIKDNEVQVKVSWAGICGTDLHEYLEGPIFISTDQPDPLL GQTAPVTLGHEFSGVVENVGKDVSRFKKGDRVVVNPTVSRREKPENVDLYDGYSFIGLGS DGAFAEFTNAPETNVYHLPDNVSAREGALVEPTAVAVQAVKEGELLFGDTVAVFGAGPIG LLTIVAAKAAGASKIFVFDLSEERLAKAKSVGATHVYNSGNVDPVQTVYEHTDNGVDVSF EVAGVGITLQQSIEVTRPRGTAVIVSIFGHPVEFNPLLQMNKGVKLTTTIAYTPTTFQQT IDLIANGSLNVKDVVTDQIELENIVESGFNQLVNDKSQAKILVRLNGDQK >gi|224999843|gb|ACJC01000157.1| GENE 2 1578 - 2834 1514 418 aa, chain + ## HITS:1 COG:SA2237 KEGG:ns NR:ns ## COG: SA2237 COG1125 # Protein_GI_number: 15928027 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 373 3 375 410 594 84.0 1e-170 MLSIKNLTKIYSGNKKAVDNISLDIQSGEFIAFIGTSGSGKTTALRMINRMIEATDGQIM MNGKDVRNMNPVELRRSIGYVIQQIGLMPHMTIRENIVLVPKLLKWSKEKKDEKAKELIK LVDLPEEYLDRYPAELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLVKE LQQKLGKTFIFVTHDMDEAIKLADKICIMSKGKVVQYDTPDNILRYPANDFVRDFIGQNR LIQDRPNMKSVESAMIKPVTVKADDSLNDAVDIMRTRRVDTIFVVNNQNKLLGFLDIEDI NQGLRARKELIDTMQRDVYKVHINSKLQDSVRTILKRNVRNVPVVDNDEHLIGLITRANL VDIVYDSIWGEEDSDSHESPIESSDENNHDLPQNQTDARTNVNEDVNDYHDAQHRGED >gi|224999843|gb|ACJC01000157.1| GENE 3 2837 - 3472 839 211 aa, chain + ## HITS:1 COG:SA2236 KEGG:ns NR:ns ## COG: SA2236 COG1174 # Protein_GI_number: 15928026 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Staphylococcus aureus N315 # 1 210 1 210 211 275 81.0 4e-74 MKAFLQEYGSQLLSKAVEHFYISMFALLLAIVVAVPLGILLSKTQRIANVVLTVAGVLQT IPTLAVLAIMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVKNIDKNVIQAGQSMGMTKF QLMKDVEMPLALPLIISGIRLSSVYVISWATLASYVGAGGLGDLVFNGLNLYQPPMIISA AIVVTLLALVIDFILSLVEKWVVPKGLKVSR >gi|224999843|gb|ACJC01000157.1| GENE 4 3489 - 4433 876 314 aa, chain + ## HITS:1 COG:SA2235 KEGG:ns NR:ns ## COG: SA2235 COG1732 # Protein_GI_number: 15928025 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Staphylococcus aureus N315 # 3 314 2 313 313 424 67.0 1e-119 MKKYFNYTLILVALSLIVLSGCSLPGLGDGNAKDDVKITTTETSETKIIGHMEKLLIEHE TDGKIKPTLIGNLGSSIIQHNALQRGDANMSAVRYTGTELTSVLAAKPTKDPEKAMSETQ RLFKKKYDEKFYHSLGFANTYAFMVTKETAKKYHLEKVSDLEKYKDELRLGMDTQWMNRA GDGYPAFVKDYGFKFDSARPMQIGLVYDALKNNKLDVAVGYSTDGRIAAYDLKILEDDRK FFPPYDGSPLANEQLIKDNPEIDKALKKLEGKISTEEMQKLNYEADGKGKEPAVIAEEYL KKHHYFEEKKGGHK >gi|224999843|gb|ACJC01000157.1| GENE 5 4433 - 5128 818 231 aa, chain + ## HITS:1 COG:SA2234 KEGG:ns NR:ns ## COG: SA2234 COG1174 # Protein_GI_number: 15928024 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Staphylococcus aureus N315 # 1 220 1 220 231 266 77.0 2e-71 MKGNLLHSIIEYYSLNWAFLLELFFKHLLMSVYGVLFACIIGIPIGIFIAKYRRLSWPVI TIANIIQTVPAIAMLAILMLAMGLGPTTVVVTVFLYSLLPIIKNTYTGIVEVDENIKDAG KGMGMTGNQILRMIELPLSLSVIIGGVRIALVVAIGIVAIGSFIGAPTLGDIIIRGTNST DGTTFILAGAIPIALIAIIIDIGLRYLEKRLDPTRKNKKDSMQKHQVQKLR >gi|224999843|gb|ACJC01000157.1| GENE 6 5310 - 6011 839 233 aa, chain - ## HITS:1 COG:SA0253 KEGG:ns NR:ns ## COG: SA0253 COG1346 # Protein_GI_number: 15925966 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Staphylococcus aureus N315 # 1 214 1 214 233 256 73.0 2e-68 MIEHLGINTPYFGILVSLIPFVIATYFYKKTNGFFLLAPLFVSMVAGIAFLKLTGISYEN YKIGGDIINFFLEPATICFAIPLYRKREVLKRYWLQIFGGIAVGTIIALLLIYLVAITFQ FGNQIIASMLPQAATTAIALPVSDGIGGVKELTSLAVILNAVVISALGAKIVKLFKISNP IARGLALGTSGHTLGVAAAKELGETEESMGSIAVVIVGVIVVAVVPILAPILL >gi|224999843|gb|ACJC01000157.1| GENE 7 6015 - 6473 443 152 aa, chain - ## HITS:1 COG:SA0252 KEGG:ns NR:ns ## COG: SA0252 COG1380 # Protein_GI_number: 15925965 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Staphylococcus aureus N315 # 26 133 14 121 145 130 70.0 8e-31 MVILEQTHLVKNKAVDNKKSMKYSIFQQALTIAVILLISKIIESFIPIPMPASVIGLVLL FIALCTGIVKLGQVETVGTALTNNIGFLFVPAGISVINSLPILKQSPILIILLIIISTLL LLICTGFASQLLVTKSLFPSKEKNEETSHIGG >gi|224999843|gb|ACJC01000157.1| GENE 8 6608 - 7366 895 252 aa, chain - ## HITS:1 COG:SA0251 KEGG:ns NR:ns ## COG: SA0251 COG3279 # Protein_GI_number: 15925964 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 251 1 245 246 260 56.0 2e-69 MKALIVDDEPLARNELQYLLNLNDAIDEIEEAENIEETLEKLLYNTFDLIFLDINLMDES GIDLAQKINKMKQSPHIIFATAHEKFAVKAFELNATDYILKPFEKDRINQAVNKVGMAKD KSKNKDKTITPKYIDYSDDEHAQTHVLPIEVDERIHILNFTDIIALSVNNGITTIDTTKQ SYETTETLNHYEKKLPSSLFIKIHRATIVNKEHIQTIEHWFNYTYQLTLTHEFKYQVSRS YMKTFKQQLGLQ >gi|224999843|gb|ACJC01000157.1| GENE 9 7347 - 9122 1557 591 aa, chain - ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 583 1 584 584 729 62.0 0 MLNLFILLLERVGLIILLAYILMNINHFKTMMSERDKWRSKFQLIIIFGIFSMISNFTGI EIENGHIVSGDIYYHLSKDASMANTRVLTIGVSGLIGGPWVAIIVGIISGLCRLYIGGAD AYTYLISSIVIAIISGYFGHQTIKQNTYPSIKKGAIIGAITEIIQMSCILLFTNNLHHAI TLVSFIALPMIIINSLGTAIFLTIILSTIKQEEQMRAVQTHDVLQLANETLPYFRSGLNE KSAQQAAEIILKLMQVSAVAITNKKDILTHIGAGSDHHVARKEIITDLSKEVIQSGKLKV AHTREGIGCHHPNCPLEGAIVVPLYIHNEIAGTLKFYFTDNNIISTSDQQLAKGLANIFS SQLELGQAEMQGQLLKDAEIKSLQAQVNPHFFFNAINTISALVRIDSEKARRLLIQLSQF FRSNLNGARNNTITLQKELQQVAAYLSLEQARYPNRFNIHYRIDDQCQDALIPPFIIQIL VENSIKHAFKNRKVNNHIDVNVSMKQDYLSISVQDNGQGIPADQLDIIGYTTVTSTTGTG NALVNLNKRLTGLFGTTSALNIQSSQSGTTVSCLIPYKSSKEEHFNESVNR >gi|224999843|gb|ACJC01000157.1| GENE 10 9546 - 10946 1426 466 aa, chain + ## HITS:1 COG:SA2233 KEGG:ns NR:ns ## COG: SA2233 COG0477 # Protein_GI_number: 15928023 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 466 1 466 466 664 80.0 0 MNTSQKFRGDNRLLLGIILGVITFWLFAQSLVNLVVPLQSSYNSDIGTINIAVSLSALFS GLFIVGAGDIADKIGRVKMTYIGLALNIVGSVLIIITPLPSLLIIGRAIQGLSAACIMPA TLAIINEYYIGTARQRALSYWSIGSWGGSGVCTLFGGLMATNLGWRSIFIVSIILTILSM FLIKHTPETKAEPIGDQPTETKKFDVIGLIILVVSMLSINVIITQTSQFGLFSPFILGLI AIFVISLIIFVIYENKIKQPLVDFDIFKNKGYTGATISNFMLNGVAGGTLIVVNTFYQQK LDFNSQETGYISLTYLVAVLIMIRVGEMILQSLGPKRPLLLGSALTVIGLILLSLTFLPN AWYIASSVVGYLLFGTGLGIYATPSTDTAVAQAPDDKVGVASGVYKMASSLGNAFGVAIS STVYSVLAAQLNLTLGGFTGVMFNALIALLAFLSILFLIPKKQSNV >gi|224999843|gb|ACJC01000157.1| GENE 11 11365 - 12297 942 310 aa, chain + ## HITS:1 COG:SA2232 KEGG:ns NR:ns ## COG: SA2232 COG1893 # Protein_GI_number: 15928022 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Staphylococcus aureus N315 # 1 310 1 310 311 424 67.0 1e-119 MKIAIAGSGALGSGFGAKLFQHDYDVTLIDNWEPQVTTIQQDGLHIDINGEAHHFKLPMY RLTEIPKDTSYDIVFLFPKSMQLEEVLSHIQPHLHDNTIVVCTMNGLKHERLIQQYVSID RIVRGVTTWTAGIDQPGHTHLMGQGPVEIGCLVPEGKESVDIIVNLLQNAELKGVKSEHL HQSIWKKICVNGTANSLCTILECNLAALNNSDDAKNLIYKITQEIVHVATVDDVHLNVDE IFDYLIALNDKVGPHYPSMYQDLIKDNRTTEIDYINGAVSKLGKENHIATPVNDFVTNLV HAKENQRGAQ >gi|224999843|gb|ACJC01000157.1| GENE 12 12423 - 13259 562 278 aa, chain - ## HITS:1 COG:SA1893 KEGG:ns NR:ns ## COG: SA1893 COG0706 # Protein_GI_number: 15927665 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Staphylococcus aureus N315 # 3 269 4 271 290 269 53.0 4e-72 MHKRLFITLLGFIILLAGCDYSKEENQTGIFYNVFVKSMDEFLHFLGRVFQDNYGFAIIS IVLIVRFILLPFMLIQVKNMHMMREKTKVVQPELDAIRDKMKHATSQEERNAANQLLLKK YQSYGINPLKNMLGCLPVLIQMPILMGLYMSLKYPSSHGITEYPHFLWFDLTQPDLIMTI IAAIMYFVQPLVNSIHYPKDQRKTYYFMMVFSPIFITYASLHSAAALGLYWSISAAFLIV QMHFAHSHYKKVALHEAKKLKQKFEHHKDNSELLTEES >gi|224999843|gb|ACJC01000157.1| GENE 13 13400 - 14896 954 498 aa, chain - ## HITS:1 COG:SA2230 KEGG:ns NR:ns ## COG: SA2230 COG1680 # Protein_GI_number: 15928020 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 1 480 13 490 498 435 47.0 1e-121 MTILSIISITTREITHSKNETILTHASQKHIDKMVETAMKKGDIPGLAILIIKDNKIFLN KGYGYANIEKKAKVNPHTQFEIASNTKAFTGYAILQLVQEGKINLNDKVSTFIPGFKMKY EDKKIDITIEQLLAQTSGIPGDITEENRYSKQYDSIENIVNFAKGKRLNHAPGETFEYSN MNYDILGLIIQNVTHQSYTSYIQKHVLAPLKMKHTTFKVNNTKANNEALGYIWEDNENKV AQPEFNIGDTPAAYMMSSTSDLAKWVQLQIHPTSKSQAQLIRQSHQVLSNSLNSEPNADS YGSGWFINTDDHLVLHTGVLDNFSSQILLNIRKSYGIVVLANTNSSQVTRLAEHLNTQIM NNRHYTTIEEKVNHTKNMQLIISTLADIFMVIFSILVFSKILKLRDGHIFIRKCLRTSIM FSIILLGFVAMNILFYLLPLIILGDATWGFVLSWLPLYSKYLIVSVYLAITMLLVWLSLL SITYHSDENKKHKTTPKH >gi|224999843|gb|ACJC01000157.1| GENE 14 15221 - 17050 1539 609 aa, chain + ## HITS:1 COG:SA2229 KEGG:ns NR:ns ## COG: SA2229 COG0531 # Protein_GI_number: 15928019 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 609 1 609 609 964 83.0 0 MFIQFKRLLIGRPKRNRDLKNEKISKFKGLAILSSDALSSVAYGPEQILITLSVIGAVAS WYTLPIAGAVLILLTALILSYRQIIYAYPKGGGAYIVSKTNLGEKWGLLAGGSLLVDYIL TVAVSISSGADAFVAAFPHLYHFKVLIACLLVLFILMMNLRGLTESATVLSYPVYLFIIG LIVLIVVGTFRVATGQIAPHIHSTVGSTVPGVTLFLLLKAFSSGASSLTGVEAISNAVTN FKNPAPKNAVKTLVTMGTILAVLLVGIVVLSYIYGIMPQTETTVLSQLASQIFGENVAFY FIQATTVMILVLAANTGFTAFPMLAASMSKDKYMPRMFTVRGDRLGYSNSIIILGVLAII LIILFEGMTENLIPLYAVGVFIPFTLAQFGMVLKWLRERPERWGIKLTINLIGGTITFIV FMILLITKLNQVWPILLFLPFVVFIFIRIHVHYENIACELRSEIDIHDIPVVDRNLAIVP IQSITTVVDKSIYYAKLLANDDVIAVHVTFGDEDEQAFMTKWKKHFPDVRLVILHSEYRS IIRPISRFIDKIRKKANDKNYLITVVVPEFIPKKAWQHLLHNQTSLRLKLHLIYQKNVTL CTIPFKLMK >gi|224999843|gb|ACJC01000157.1| GENE 15 17199 - 18575 997 458 aa, chain - ## HITS:1 COG:SA1519 KEGG:ns NR:ns ## COG: SA1519 COG1113 # Protein_GI_number: 15927274 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 449 1 448 453 534 63.0 1e-151 MAKQLQRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMLIGIVLFAFMRAL GELLLSNSKFNSFVDIANEYLGPFGGFVIGWTYWVCWIVSSMSDLTAMGQYFAYWYPQVP HWLTVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIITMVIVGLVLIFLSFKTEYGHA SFGNLIHHGGMFPHGVAGFLMSFQIAVYSFIGIELIGVTAGETKNPEKTIPKAINNVPIR ILLFYIGGLLVIMSVIPWFKVDPDSSPFVKLFTLIGVPFAAGIVNFVVLTAAASATNSGI YSNSRILFGLAKQGLGPKALTKTNSNGVPYLSMFVSSITLLIAALLNFVFPDAIKLFIYV TTLSTVLFLVVWGMIIVSYIAYVKKNPERHRSSAFKLWGGKIIAYIVLSFFLFIFILLFF SKDTRVAIFISPLWFIFLFFYYKKYKNNAESLAKRQQH >gi|224999843|gb|ACJC01000157.1| GENE 16 18893 - 19702 641 269 aa, chain + ## HITS:1 COG:SA2225 KEGG:ns NR:ns ## COG: SA2225 COG1409 # Protein_GI_number: 15928015 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Staphylococcus aureus N315 # 1 264 1 263 268 312 53.0 4e-85 MKIGTISDLHIDRHPHLNPEIYLEKLCQVIKQRSIELLIIAGDISNDYRISYKFIQSIQE LSGIPTYFVPGNHDLWSDQVDKTSTEILSFFRSKKECLIGNPIIIHDQYAIVGHVGWYDY SYADNRFSQQKIASGKHYGATWQDKVRTDWSLSDPQLSLLAAQEVEKDINNVSPRQIILV THVVTHPQFVVPTPHRIFDFFNAFIGTRDFDTIYKNYPIRFSVMGHVHFRKKLVENNIIY ICPCLGYQRQWMTDDITYEINHALVDFDI >gi|224999843|gb|ACJC01000157.1| GENE 17 19765 - 20373 468 202 aa, chain - ## HITS:1 COG:SA2224 KEGG:ns NR:ns ## COG: SA2224 COG4990 # Protein_GI_number: 15928014 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 4 200 5 202 218 267 70.0 1e-71 MKIILPVKPISQLFPIPFVMGCEGVSAAMLLQFNHYDIKATQIMSHWPKHPTNPYKGYVG HPLLVKFGHHQTIFPDAFAPFLKQYDSRIVDGTGTSLNQLEKFIDKGQPVIIYHTSLGSK PLRRVFHFDNQPTKLVSNIHVTLLIGYDDDYYYYIDPLWSRLTKFVIFPSIIPNSKQIIK IKKRTLENSYNAPGRKCIYIDN >gi|224999843|gb|ACJC01000157.1| GENE 18 20680 - 21711 769 343 aa, chain - ## HITS:1 COG:SA2222 KEGG:ns NR:ns ## COG: SA2222 COG0477 # Protein_GI_number: 15928012 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 342 59 400 403 361 64.0 1e-100 MIGLAIGQFVFGPLSDVLGRKKMALILLIGYLIASLLSVFTVHLTIFLIIRLIQGLAGGG AIVIAKASIGDNYDGDELAKFLTSLMVINGIITIIAPLLGGLALSIASWRMIFIFLTIIT LIVILGILLKMPVGLHQEQSQLKFKAIFKDFGLLLTRPTFVIPMLLQGLTYVMLFSYSSA APFISQKMYHMTPLQYSAMFAINGVGLIVVSQITAIIVEKISRYTMLIYLTIIQMLGVVI LIFTLTLHLPLYVLLIGFFINICPVTSIAPLCFSMAMAERTGGSGNASSLLGLFQFILGG LISPLVGLNGQHDMSPYLIIISATAVLLIALQIIYFKLFMKKT Prediction of potential genes in microbial genomes Time: Sun May 29 08:08:17 2011 Seq name: gi|224999842|gb|ACJC01000158.1| Staphylococcus epidermidis W23144 contig00202, whole genome shotgun sequence Length of sequence - 15852 bp Number of predicted genes - 16, with homology - 16 Number of transcription units - 12, operones - 3 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 490 554 ## COG1929 Glycerate kinase - Prom 597 - 656 11.0 + Prom 545 - 604 9.3 2 2 Op 1 . + CDS 775 - 2238 653 ## SERP2010 hypothetical protein 3 2 Op 2 . + CDS 2259 - 2645 189 ## COG2246 Predicted membrane protein + Term 2737 - 2783 10.2 + Prom 2723 - 2782 11.1 4 3 Tu 1 . + CDS 2935 - 3816 605 ## COG0053 Predicted Co/Zn/Cd cation transporters + Term 3829 - 3875 10.4 + Prom 3899 - 3958 6.3 5 4 Tu 1 . + CDS 4090 - 4776 892 ## COG0588 Phosphoglycerate mutase 1 + Term 4822 - 4869 7.0 + Prom 5186 - 5245 8.3 6 5 Op 1 31/0.000 + CDS 5283 - 6071 1066 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 7 5 Op 2 34/0.000 + CDS 6052 - 6771 682 ## COG0765 ABC-type amino acid transport system, permease component 8 5 Op 3 . + CDS 6768 - 7499 631 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 7520 - 7567 14.2 - Term 7507 - 7555 15.2 9 6 Tu 1 . - CDS 7670 - 8917 1230 ## COG2348 Uncharacterized protein involved in methicillin resistance - Prom 9044 - 9103 10.3 + Prom 9147 - 9206 8.8 10 7 Op 1 . + CDS 9278 - 9640 440 ## SE1988 hypothetical protein 11 7 Op 2 . + CDS 9664 - 10260 381 ## COG1651 Protein-disulfide isomerase + Term 10308 - 10349 5.0 + Prom 10272 - 10331 7.0 12 8 Tu 1 . + CDS 10539 - 11009 480 ## COG3832 Uncharacterized conserved protein + Prom 11097 - 11156 12.5 13 9 Tu 1 . + CDS 11223 - 12065 807 ## COG2116 Formate/nitrite family of transporters + Term 12095 - 12150 4.3 + Prom 12414 - 12473 7.7 14 10 Tu 1 . + CDS 12507 - 13043 679 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 13141 - 13190 4.2 - Term 13209 - 13250 8.0 15 11 Tu 1 . - CDS 13261 - 14736 1519 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 14766 - 14825 8.1 + Prom 14800 - 14859 11.8 16 12 Tu 1 . + CDS 14986 - 15705 806 ## COG2138 Uncharacterized conserved protein + Term 15795 - 15844 13.1 Predicted protein(s) >gi|224999842|gb|ACJC01000158.1| GENE 1 1 - 490 554 163 aa, chain - ## HITS:1 COG:SA2220 KEGG:ns NR:ns ## COG: SA2220 COG1929 # Protein_GI_number: 15928010 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Staphylococcus aureus N315 # 1 161 1 161 380 200 65.0 8e-52 MSPYKVIIAPDSFKESMSAKEAAFAIKEGFQEVFDSSTIYDIIPMADGGEGTTEVLKEAL NATSYCVEVKDPLNRNIMASYARSDEHRTAIIEMAAASGLALLSKDERNPSITTSYGTGQ LINDALNHGVNKIILGIGGSATNDGGVGMLKALGVSFKDKNNQ >gi|224999842|gb|ACJC01000158.1| GENE 2 775 - 2238 653 487 aa, chain + ## HITS:1 COG:no KEGG:SERP2010 NR:ns ## KEGG: SERP2010 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 487 1 490 490 704 93.0 0 MNYLKQYESFFWLIGIFIFYLIMAILTPLSTTDWHAYKVNLSQYLTQENGRYLGHLFEWV AVHNVILRALIYAITSFLVIYIVVYMVQLHTNRIYFILSFVFMVTVPNTIYSETYGWFTG FFSYIPATVLSLFILFTVVKIIESHDTVSEMQLWVFLLVSLFGQFFLENVSIANSLIILI GLVVYFFVKKRLSYFLIVGLMLSCIGNIIMLLNFNYFLIKDGLNTHYSISDSQGMIHKAG VTLFKLVPQYMFINQMIILTVISIVSIVLLKQNKSLKHMRTYIKIPLLLGLIILPVYKIF VYNQFHFELYKSSISIAVLNTTICFIYMMSVIYVVFKTIQQRYIKMIAIGSFIAMASSVL PLLFVTPISYRNFYFIYTLWIVILLCLIQQCDVLFKQLEYIIKIFAIIISIIMMIGFTFI HISSVHRIDVIKEQITQHQKITLERLPFERYTHMTTPKSKVQLQDFKHYYNLPKDITFKI VPYGTKQ >gi|224999842|gb|ACJC01000158.1| GENE 3 2259 - 2645 189 128 aa, chain + ## HITS:1 COG:SA2219 KEGG:ns NR:ns ## COG: SA2219 COG2246 # Protein_GI_number: 15928009 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 126 1 126 128 144 72.0 3e-35 MKLTRIHYEIIKFIIVGGINTFNYYIAYLFLLKVLHVNYMVSHIVGFIVSFIISYYLNCY FVYKVKPTIEKFLRFPITQIVNMGMQTLLLYIFVKWLNIASEIAPFAGLIITIPVTFILS KWLLRDKV >gi|224999842|gb|ACJC01000158.1| GENE 4 2935 - 3816 605 293 aa, chain + ## HITS:1 COG:SA2205 KEGG:ns NR:ns ## COG: SA2205 COG0053 # Protein_GI_number: 15927995 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Staphylococcus aureus N315 # 1 285 1 285 288 427 80.0 1e-119 MTQNENLKLAQRGAYLSLVIYIILSIAKYMTGYVYDSAAVRADALNNMTDILVSVAVIVG LKISIKPADQNHPYGHLKSENISTLLVSFIIMFVGIQVIIENFPRLFTHDTHIPNFITII ISIISGLVMLCVFAINYRLSKRTKSSSLKSAAKDNLSDSLVSIGTAIGLLFTQIGFPIID IILANILGLLIVFTGFGIFKESIFTLSDGFNEQDLEEYRLDILEVEDVIDVNNIKGRYHG SSIFIDVTIVVDPYLSLYEAHQICDKVEIHLHSKGISSVYVHPEPYTTKDEVK >gi|224999842|gb|ACJC01000158.1| GENE 5 4090 - 4776 892 228 aa, chain + ## HITS:1 COG:SA2204 KEGG:ns NR:ns ## COG: SA2204 COG0588 # Protein_GI_number: 15927994 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 369 79.0 1e-102 MPQLILCRHGQSEWNAKNLFTGWADVKLSKQGIEEAKSAGKKIYDNQIEIDIAFTSLLTR ALETTQHILAGSDQQWIPVHKSWRLNERHYGGLQGLNKDDARKKWGEDQVHQWRRSYDVR PPRESEEQREAYLKNRRYQHIDHRMMPYCESLKDTLERVVPFWTDHISQHLLDDKTVLVS AHGNSIRALIKYLEGLSEEDIVGYEIKTGAPLVYELTDDLVVKDKYYL >gi|224999842|gb|ACJC01000158.1| GENE 6 5283 - 6071 1066 262 aa, chain + ## HITS:1 COG:SA2202 KEGG:ns NR:ns ## COG: SA2202 COG0834 # Protein_GI_number: 15927992 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Staphylococcus aureus N315 # 1 260 1 257 259 377 81.0 1e-104 MKRLLLCIVALVFVLAACGNNSSNNKDNQSSSKDKDTLRVGTEGTYAPFTYHNKKDQLTG YDIDVIKAVAKEENLKLKFNETSWDSMFAGLDAGRFDVIANQVGVNKDREKKYKFSEPYT YSSAVLVVRENEKGITSFNDVKGKKLAQTFTSNYGQLAKDKGADITKVDGFNQSMDLLLS KRVDGTFNDSLSYLDYRKQKPNAKIKAIKGHAEQNKSAFAFSKKVDEKTIEKFNKGLEKI RDNGELAKIGKKWFGQDVSKPE >gi|224999842|gb|ACJC01000158.1| GENE 7 6052 - 6771 682 239 aa, chain + ## HITS:1 COG:SA2201 KEGG:ns NR:ns ## COG: SA2201 COG0765 # Protein_GI_number: 15927991 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Staphylococcus aureus N315 # 76 239 1 164 164 275 93.0 5e-74 MFLNLNNEQQHALDAAKQAFGPMLEGLVKYSIPITLVTFILGLIIALFTALMRISTSKLL RGIARVYVSIIRGTPMIVQLFIIFYGIPELGRLVTNNADNQWTLAPVVAAVIGLSLNVGA YASEIIRGGILSIPKGQTEAAYSIGMNYRQTVQRIILPQAIRVSIPALGNTFLSLIKDTS LLGFILVAEMFRKAQEVASTTYEYLTIYLLVALMYWVVCFVISIIQGWYESRIERGYRS >gi|224999842|gb|ACJC01000158.1| GENE 8 6768 - 7499 631 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 240 1 242 245 247 51 3e-65 MIELSHIHKSFNETEVIKGIDLKINQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYV NGMTYTAKDKKSQIKVRQQSGMVFQNYNLFPHKSALENVMEGLITVKKMNKATANEEAMN LLAKVGLVHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVI KELADEGMTMVIVTHEMRFAKEVSNQIAFIHEGVIAEQGTPEDIFNHPKTEELQRFLNVI NEK >gi|224999842|gb|ACJC01000158.1| GENE 9 7670 - 8917 1230 415 aa, chain - ## HITS:1 COG:SA2199 KEGG:ns NR:ns ## COG: SA2199 COG2348 # Protein_GI_number: 15927989 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 415 1 415 416 591 73.0 1e-169 MKFVNLTSEEFEQFTSENFSHYTQSSIHYNNRSKTKGDVHLVGVKDDQEDVIAACLLTEA RSLKFFKYFYTHRGPVMDFNNLVLVRFFFKSLTAYLKKHNCLYVLVDPYVLENLRQPNGE IIESFDNRALIKTMEELGYKHQGYTVGYDTMSQIRWLSVLNLKDKSEDQLLKEMDYQTRR NIKKTYEMGVKVKTLPIEETDTFFELFKMAEEKHGFKFREEPYFVEMQKTYEDHAMLKLA YIDLQDYLDTLQTKHQNLNQQLKDVEKTLEENPNSKKNKTKHTQVKQQFDSNARKIRQTK EKIAEEGQVLHLAAALYIYNDHEVYYLSSGSNPKYNAYMGAYRLQWDMIQFAKEHNIDRY NFYGVTGDFSENAEDAGVQKFKEGFNAKIYEYIGDFIKPIKPLFYKVKQELENRR >gi|224999842|gb|ACJC01000158.1| GENE 10 9278 - 9640 440 120 aa, chain + ## HITS:1 COG:no KEGG:SE1988 NR:ns ## KEGG: SE1988 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 120 3 122 122 182 99.0 2e-45 MLRKLLVGVSVLTLLLAGCMSHEYADKIDKAVKLQEKKQQKIAKNDSGDEVKHFDKKDAN IYVFDKGKYVVLEYKPLSDDAEARYYTYEFKDKKAYYNKDFNAKAYYQSHEPDYKEENMY >gi|224999842|gb|ACJC01000158.1| GENE 11 9664 - 10260 381 198 aa, chain + ## HITS:1 COG:SA2197 KEGG:ns NR:ns ## COG: SA2197 COG1651 # Protein_GI_number: 15927987 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Staphylococcus aureus N315 # 1 197 1 197 199 209 57.0 2e-54 MKKLIGLLMILCMVLLYSCSGPMDSPKHSNNSKPVVVIYGDYKCPYCKKTEDRVMPKLKK KYIDTNKIKYQYVNLAFLGKDSIVGSRAQHAVNHYAPEKSLEFQKLMFNQQKDEHKQWIT TRLVDKQIDELSISDDTKKKIKTDYKTKGSISWKKAKEDQQIAKKNHIKQTPTAFVNDTK VEDPYDFSSYEMLLENEK >gi|224999842|gb|ACJC01000158.1| GENE 12 10539 - 11009 480 156 aa, chain + ## HITS:1 COG:SA2193 KEGG:ns NR:ns ## COG: SA2193 COG3832 # Protein_GI_number: 15927983 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 153 1 154 155 171 65.0 6e-43 MTIEKKKNKIIFTRTFSAPINKVFDAYTKRELFEQWFHPQDASVTVYNFNATKGGSAFYA IQAPQMTSYTIAEYLQVDAPYYIEYLDYFATSKGEKDTSMPGMHITLNFEEVKGKTTVTS TSTFPTEGAAQQAIDMGVEQGMNSTLNQLEKLLNQK >gi|224999842|gb|ACJC01000158.1| GENE 13 11223 - 12065 807 280 aa, chain + ## HITS:1 COG:SA2191 KEGG:ns NR:ns ## COG: SA2191 COG2116 # Protein_GI_number: 15927981 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Staphylococcus aureus N315 # 8 279 1 272 274 385 77.0 1e-107 MWIGCEDMFKNNKSIEDTYATKSIIQNIVGQAQIKQVMAKQTPMRYTLKAIMAGFLLSIV TVFMLAIKTQFASTHNDGLINLMGAIAFSLGLVLVVLTNSELLTSNFMYLTVGWYYRAIS VSKMIWIFIFCFIGNILGGFILFFLMKYAHVMTPEMTDSLTALVHKKTVESTWLNILIKG IFCNFFINIGIFISMQFKEGLAKAFFIACGVIVFVFMGYEHVVFNAGLYAGMMFFNMDGL SWLGVLKNIVFAFLGNYIGGGIFIGLVYAYLNGKRDSLQP >gi|224999842|gb|ACJC01000158.1| GENE 14 12507 - 13043 679 178 aa, chain + ## HITS:1 COG:SA2190 KEGG:ns NR:ns ## COG: SA2190 COG0454 # Protein_GI_number: 15927980 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 178 1 178 178 282 74.0 2e-76 MSNINIRVAHEQDAEELHSIMQVAFTPLRELGIDWPSVHADLEMVRDNLRQNTTFVLENE KEIISTITVCYSWSSVKPISGYPFVWWFATRPTYDGQGYGSQLLKYVEESFLRDTLKAAA VTLGTSARLHPWLLNIYEKRGYEIYAKHENDDGDLGVIMRKILIPEQFNEDILGRPPF >gi|224999842|gb|ACJC01000158.1| GENE 15 13261 - 14736 1519 491 aa, chain - ## HITS:1 COG:SA0229 KEGG:ns NR:ns ## COG: SA0229 COG0747 # Protein_GI_number: 15925940 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 2 488 4 488 491 520 56.0 1e-147 MKKLITLIVMISFVLASCGGTSSTDKDTLNVEIPLKTKSIAPYETDIPVKTGALESLFKM SKNGKVKPLLVKKYHQVSDNQLELTLKDNIKFQNGHHLTGEAVKRSLEEGMKKSDLLKGS LPIKSINAHGQKVTINTKEPYPELKSELASPFAAIYDTKAKNKVTDQPVGTGPYQIDQYK RSQKIVLKQFKDYWQGTPKLKRINVTYHEDGNTRVDHLLAGKSDLTTDVPIERVDDVKKS NKANIQSTSGFRTHLMLYNHDSKKVNKKVREALDMIINRKDIAKNVSKNYADPASGPFNH RLKSLEKEEIQSQDIKRAKELLAKEGYSKSHPLKLNMVTYDGRPELPKIGQVIQSEAKKA NVDIQLRNVDDIEGYLQNKQAWDVSMYSYLSVPRGDTGYFFNTAYLPEGALNKGNYSNPK VTQLIKKLNTTFGDKQRAQVTNEILNESKKDVPNSYITYNSQIDGVNNNVRHFNVTPESI YLIDYKLSKKE >gi|224999842|gb|ACJC01000158.1| GENE 16 14986 - 15705 806 239 aa, chain + ## HITS:1 COG:SA2189 KEGG:ns NR:ns ## COG: SA2189 COG2138 # Protein_GI_number: 15927979 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 239 1 239 243 271 55.0 9e-73 MIGNILVAHGMRKGNQNEALEEFIGTLLKDEQYYYELAFLESETQNLEIIMEKMIKQGIT KFRIVPLLIFSAMHYVSDIPQILKEMKARYPQIDSKMSAPLGTHPYMKTLVENRIADEKV NEFSTQATIVIAHGNGSGRFTKAHDELKAFVKTLDSHHPVYARALYGTLAFKNDLDKISE QYDELVIVPLFLFDGRLVNKVKRLLGEMTLHSQLHITPSINFDPILRLIIRERLEALDI Prediction of potential genes in microbial genomes Time: Sun May 29 08:08:33 2011 Seq name: gi|224999841|gb|ACJC01000159.1| Staphylococcus epidermidis W23144 contig00203, whole genome shotgun sequence Length of sequence - 18244 bp Number of predicted genes - 16, with homology - 15 Number of transcription units - 7, operones - 3 average op.length - 4.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 34 - 210 82 ## - Prom 248 - 307 6.1 + Prom 121 - 180 10.1 2 2 Op 1 14/0.000 + CDS 408 - 2813 2599 ## COG1251 NAD(P)H-nitrite reductase 3 2 Op 2 2/0.000 + CDS 2816 - 3130 424 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 4 2 Op 3 1/0.500 + CDS 3121 - 4056 886 ## COG0007 Uroporphyrinogen-III methylase + Term 4065 - 4107 9.6 + Prom 4068 - 4127 6.4 5 3 Op 1 13/0.000 + CDS 4236 - 7919 3818 ## COG5013 Nitrate reductase alpha subunit 6 3 Op 2 12/0.000 + CDS 7909 - 9462 1415 ## COG1140 Nitrate reductase beta subunit 7 3 Op 3 12/0.000 + CDS 9428 - 10030 549 ## COG2180 Nitrate reductase delta subunit 8 3 Op 4 . + CDS 10023 - 10700 587 ## COG2181 Nitrate reductase gamma subunit 9 3 Op 5 . + CDS 10759 - 11172 385 ## SERP1983 hypothetical protein 10 3 Op 6 19/0.000 + CDS 11182 - 12216 1131 ## COG4585 Signal transduction histidine kinase 11 3 Op 7 . + CDS 12296 - 12901 583 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 12923 - 12964 6.2 + Prom 13014 - 13073 8.2 12 4 Tu 1 . + CDS 13156 - 14319 1173 ## COG2223 Nitrate/nitrite transporter + Term 14328 - 14384 7.0 13 5 Tu 1 . - CDS 15020 - 15466 371 ## COG1846 Transcriptional regulators - Prom 15551 - 15610 5.3 + Prom 15370 - 15429 8.7 14 6 Op 1 . + CDS 15630 - 16259 775 ## COG0778 Nitroreductase + Prom 16295 - 16354 8.8 15 6 Op 2 . + CDS 16383 - 16748 432 ## SERP1977 hypothetical protein + Term 16757 - 16800 7.0 + Prom 16830 - 16889 3.9 16 7 Tu 1 . + CDS 16915 - 18195 1459 ## COG1301 Na+/H+-dicarboxylate symporters Predicted protein(s) >gi|224999841|gb|ACJC01000159.1| GENE 1 34 - 210 82 58 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELRPKLKYIINYFIIYVAIEMTLYTVILNHKLFYNEPHSLSKQYHRALSRLGHKVPR >gi|224999841|gb|ACJC01000159.1| GENE 2 408 - 2813 2599 801 aa, chain + ## HITS:1 COG:SA2188 KEGG:ns NR:ns ## COG: SA2188 COG1251 # Protein_GI_number: 15927978 # Func_class: C Energy production and conversion # Function: NAD(P)H-nitrite reductase # Organism: Staphylococcus aureus N315 # 1 801 1 801 801 1368 83.0 0 MAKQKLVMIGNGMAGLRTIEEILERSQSQFDITIIGKEPYPNYNRIMLSNILQKKMTVED TIMNSYDWYQENNVELINNDPVEKVDKENKIVTTSKGIEVEYDICIFATGSKAFVLPIPG SNLPSVIGWRTIDDTNKMIEIAQTKKRAVVIGGGLLGLECARGLLDQGMEVTVLHLADWL MEMQLDRKAGDMLKADLEKQGMKIELQANSKEIIGDKDVEAIKLADGRVIETDLVVMAVG IRPYTEVAKDSGLDVNRGIVVNDYMQTSDSHIYAVGECAEHDGKVYGLVAPLYEQGKVLA DYLTGKETKGYKGSTTFTSLKVSGCDLYSAGQIVEDEDIHGVEIFNSVDNIYKKVYLSQG QVVGAVLYGDTDDGSRFYNMMKKHETLEDYTLVSLLHKGDEDAGTSIADMSDDETICGCN GVDKGTIVNAITTKGLTSVDEVTKATKAGNSCGKCKGQIGELLQYTLGDDFIAAKPTGIC PCTDLTRDQIVTQIRSKNLKTSKEVRHVLDFKDKDGCPKCRPAINYYLNMVYPFEHRDEK DSRFANERYHANIQNDGTFSVIPQMRGGVTDADQLIRLGEVAKKYNVPLVKVTGSQRVGL YGLKKEELPQVWKDLGMRSASAYGKKTRSVKSCVGKEFCRFGTQYTTRLGIRLEKTFEYI DTPHKFKMGVSGCPRSCVESGVKDFGVISVENGYQIFIGGNGGTDVTVGKLLTTVETEDE VIQLCGALMQYYRETGIYAERTAPWLERMGFENVKNVLLNQEKQKELYLRIMEAKKAVEN EPWEAIVENKEAQKIFEVEKV >gi|224999841|gb|ACJC01000159.1| GENE 3 2816 - 3130 424 104 aa, chain + ## HITS:1 COG:SA2187 KEGG:ns NR:ns ## COG: SA2187 COG2146 # Protein_GI_number: 15927977 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Staphylococcus aureus N315 # 1 104 1 104 104 146 67.0 1e-35 MKAKEKVKVTTMNEMIPQIGKKVVVNEKEIGIFLTDNGDLYAIGNICPHKEGPLSEGTVS GDYVYCPLHDQKIALKTGEVQQPDTGCVETYEVEVINGDIYLCL >gi|224999841|gb|ACJC01000159.1| GENE 4 3121 - 4056 886 311 aa, chain + ## HITS:1 COG:SA2186 KEGG:ns NR:ns ## COG: SA2186 COG0007 # Protein_GI_number: 15927976 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Staphylococcus aureus N315 # 1 304 1 306 325 358 60.0 9e-99 MSITYPGTVYLIGAGPGNPNLLTKKAERLIRAADVILFDRLVNPFILQYASSQTKVINVG KKPYCKHIQQDEINQKIVEAAKQYRCVVRLKGGDPAIFGRITEEVQTLENHHIHYEIVPG VTSASAAVATMNMGLTMRSIAPSVTFSTGHFKDSVKHDTDIRNLINGGTLAIYMGVKRLG QIIKQIESYTNEDYPIAIVFNASCYNEKIVIGHLSTIEEQLASQKLEGHPGICILGNILD DINRTLLNNNEIDKGNLYLIKGDKERAIAKAETLYDEGIQCLIDFDHSYHISQQNVYNEM IKHKSIKKIYV >gi|224999841|gb|ACJC01000159.1| GENE 5 4236 - 7919 3818 1227 aa, chain + ## HITS:1 COG:SA2185 KEGG:ns NR:ns ## COG: SA2185 COG5013 # Protein_GI_number: 15927975 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Staphylococcus aureus N315 # 1 1227 1 1229 1229 2243 86.0 0 MGKFGLNFFKPTEKFNGNWSVLEHKSREWEKMYRERWSHDKVVRTTHGVNCTGSCSWKVF VKNGVITWENQQIDYPSCGPDMPEFEPRGCPRGASFSWYEYSPLRVKYPYIRGKLLDLWT EALEEQNGNRIAAWASIVENEEKAKQYKEARGKGGHVRANWKDVTDIIAAQILYTIKKDG PDRIAGFTPIPAMSMISYASGARFINLLGGEMLSFYDWYADLPPASPQIWGEQTDVPESS DWYNASYIMMWGSNVPLTRTPDAHFMTEVRYKGAKVISVAPDYAENVKFADHWLAPHPGT DAAIAQAMTHVILQEYYENHPNDMFINYAKQYSDMPFVIMLDEDENGYKAGRFLRASDLG MSGENNEWKPVIQDKLSQQLLVPNGTMGQRWEEGKKWNLKLETEDGTPIDPMLSMAESDY HVETIQFPYFDSSGDGIFERPIATRTIQLANGEKVKIATVYDLMTSQYGVQRFEHELEAT SYDDASSKYTPAWQEQITGIKKELVTKVAKEFAQNAIDTGGRSMIIMGAGINHWFNSDTI YRSILNLVLLCGCQGVNGGGWAHYVGQEKCRPIEGWNTIAFAKDWQGPPRLQNGTSWFYF ATDQWKYEESNVDKLKSPLAENIKHQHPADYNVTAARMGWLPSYPQFNKNSLLFGEEAKD EGDDSNEAILQKAIESVKNKDTQFAIEDPDLRKNHPKTLFVWRSNLISSSAKGQEYFMKH LLGARSGLMAEPNEDDKPEEIKWREDTEGKLDLLVSLDFRMTATPLYSDIVLPAATWYEK HDLSSTDMHPFIHPFNPAIDPLWESRSDWDIYKTLSKAVSEMAKDYLPGKFKDVVTTPLG HDSKQEISTEYGIVKDWSKGEIEGVPGKTMPNFSIVERDYTQIYDKFVTVGPKLEKGKIG AHGVSYSVSEEYEELKSMVGTWNDDNTTSVKNDRPRIDTARKVADVILNISSATNGKLSQ KSYEDLENQTGMELKDISKERASEKISFLNITSQPREVIPTAVFPGSNKDGRRYSPFTTN VERLVPFRTLTGRQSYYIDHEVFQQFGESLPVYKPTLLPMVFGARDKKVKGGQDTLVLRY LTPHGKWNIHSTYQDNERMLTLFRGGPVVWISNEDAADHGINDNDWLEVYNRNGVVTARA VTSHRMPRGTMFMYHAQDKHIETPGSEITDTRGGSHNAPTRIHLKPTQLVGGYAQISYHF NYYGPIGNQRDEYVAVRKMKEVNWLED >gi|224999841|gb|ACJC01000159.1| GENE 6 7909 - 9462 1415 517 aa, chain + ## HITS:1 COG:SA2184 KEGG:ns NR:ns ## COG: SA2184 COG1140 # Protein_GI_number: 15927974 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Staphylococcus aureus N315 # 1 517 1 519 519 994 88.0 0 MKIKAQVAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGVGYPKRWEDQG QYKGGWVLNKKGKLELKSGNRWSKIALGKIFYNPDMPLIQDYYEPWTYNYEHLTNAKQGQ HSPVATAHSLISGDRLNLKWGPNWEDDLAGGHITGPEDPNIQKIEEDIKFQFDETFMMYL PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQEACRGWRYCMTGCPYKKVYFNWKTNK AEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVQEAASAKDEKDLYEKQLDLF LDPFDEEVIAQAEKDGINQEWITAAQNSPVYKLAIEYKMAFPLHPEFRTMPMVWYCPPLS PIMSYFEGENAGQNPDMIFPAIEEMRLPIQYLANLLTAGDTEPVKEGLQKMAMMRSYMRS QITNQPFDTSKLERLGLTERQMTEMYRLLGIAKYEDRFVVPSSHKETYLDTYKAQGSQGY GGEYFGSNCEGCGVAVQSGKTGQEIYNENFYGGIFRD >gi|224999841|gb|ACJC01000159.1| GENE 7 9428 - 10030 549 200 aa, chain + ## HITS:1 COG:SA2183 KEGG:ns NR:ns ## COG: SA2183 COG2180 # Protein_GI_number: 15927973 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Staphylococcus aureus N315 # 10 200 1 191 191 280 72.0 1e-75 MKISMEGSSVINLEQLSQYQDSLGYLGQQMNFPEKVTFHPKIFEETISKSHPGYEELLAY REIMMNYTLSEIKAIYTDTFDFSKKHPLYMTFNKFDTQKERGQMLAKLKVLYEMFGLKMV DNELSDFLPLMLQFLQVADFKNDSRAQENLKLVIMIIEDGTYEMANTLAENNNPYAYVVS ALRKTLKACIMPLKEVENHA >gi|224999841|gb|ACJC01000159.1| GENE 8 10023 - 10700 587 225 aa, chain + ## HITS:1 COG:SA2182 KEGG:ns NR:ns ## COG: SA2182 COG2181 # Protein_GI_number: 15927972 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Staphylococcus aureus N315 # 1 225 1 225 225 331 73.0 5e-91 MLNQFVWVIYPYLCLAIFVIGHIARYKYDQFSWTAKSSEMIEKKQLKWGSLLFHLGIIPV FFGHVVGLLIPANWLEAIGVNNHIYHIGAVYIGSVFGIITLIGMLLLTLRRLSIKNVRRL SSFSDIFVNLVLLIILIMGCYSTLVTNAIQPEFDYRQTIAIWFRHLFMFSPNADLMLNVP WSFKLHILLGFTVFACWPFTRLVHVWSVPLSYMNRRYIVYRKNKI >gi|224999841|gb|ACJC01000159.1| GENE 9 10759 - 11172 385 137 aa, chain + ## HITS:1 COG:no KEGG:SERP1983 NR:ns ## KEGG: SERP1983 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: Two-component system [PATH:ser02020] # 1 137 14 150 150 278 100.0 6e-74 MNLDKLRAQEGYDFGGIALYDYHHTSSPIKWQYVSGNTNDRYKLIILRKGRGLAGMVMKT GKRMVIADVDTALSPEEKVKFPIILSESLTAVVAVPLWLENSMYGVLLLGQRNHQPLPQS LDQLNIEKQIGIFTEIN >gi|224999841|gb|ACJC01000159.1| GENE 10 11182 - 12216 1131 344 aa, chain + ## HITS:1 COG:SA2180 KEGG:ns NR:ns ## COG: SA2180 COG4585 # Protein_GI_number: 15927970 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 344 1 344 344 457 69.0 1e-128 MLEQTDLSLEQLLKNYYETTNEKIVFVNRYGKIIAMNDAAKDILTEEDNYNAMTNAICHR CEGYSNEYDVQSCKDCFLETTQLQHSNFQVFMKTKDNEIKPFTAMYQNIDEQRGISAFTL QNVAPQIERQEKMYQQKMLHRSIQAQENERKRISRELHDSVIQDMLNIDVELRLLKYKHK DKVLAETSQRIEGLLSQLIDDIRNMSVELRPSSLDDLGIEAAFKSYFKQFEENYGMHIKY DSNIKGMRFDSEIETVVYRVVQEGLFNALKYAGVNEIEVSTHSDGKQLVAEVVDRGKGFS LDHHPKGSGLGLYGMRERADLVNGHVNIETHINRGTIITLDIPI >gi|224999841|gb|ACJC01000159.1| GENE 11 12296 - 12901 583 201 aa, chain + ## HITS:1 COG:SA2179 KEGG:ns NR:ns ## COG: SA2179 COG2197 # Protein_GI_number: 15927969 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 201 18 217 217 324 87.0 5e-89 MILNYQEDMEVVATAADGVEAYQKVLEHQPDVLILDLSMPPGESGLIATSKISESFPETK ILILTMFDDEEYLFHVLKSGAKGYILKNSPDEQLILAVRTVYQGETYVDMKLTTSLVNEF VNQSQTDEVSPSSDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTK LNLKSKPELVEYALKKKLLEF >gi|224999841|gb|ACJC01000159.1| GENE 12 13156 - 14319 1173 387 aa, chain + ## HITS:1 COG:SA2176 KEGG:ns NR:ns ## COG: SA2176 COG2223 # Protein_GI_number: 15927966 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Staphylococcus aureus N315 # 1 382 1 382 389 544 81.0 1e-154 MNMKKGVSQLTLQTLSLVAGFMAWSIISPLMPFISQDVDISPGQISVILAIPVILGSVLR VPFGYLTNIVGAKWVFFWSFIVLLLPIFLLGQAQSPGMLMLSGFFLGIGGAIFSVGVTSV PKYFSKDKVGLANGIYGVGNIGTAVSSFCAPVLAGAIGWQNTVRSYLIILSIFAILMFLL GDKNEPKVKIPLMAQVKDLSKNYKLYYLSLWYFITFGAFVAFGIFLPNFLVDHFSIDKVD AGIRSGIFIALATFLRPVGGVIGDKFNAVQALIIDFVIMIIGALILSLSSHIVLFTIGCL AISICAGIGNGLIFKLVPSYFSKEAGSANGIVSMMGGLGGFFPPLVITFVTSITGSSHLA FFFLAIFGVIALITMIHLNKKEKAVRI >gi|224999841|gb|ACJC01000159.1| GENE 13 15020 - 15466 371 148 aa, chain - ## HITS:1 COG:SA2174 KEGG:ns NR:ns ## COG: SA2174 COG1846 # Protein_GI_number: 15927964 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 148 1 148 148 198 79.0 2e-51 MYVENSYLSKQLCFLFYVSSKEIIKKYTDYLKEYGLTYTGYIVLMAIEDDEKLNIKKLGE RVFLDSGTLTPLLKKLEKKNYVIRTREEQDERNLQISLTERGKDIQNVLSDISQSVFNEF NITQEETQNLVEDLQNFVTKNFDKTVEK >gi|224999841|gb|ACJC01000159.1| GENE 14 15630 - 16259 775 209 aa, chain + ## HITS:1 COG:lin0151 KEGG:ns NR:ns ## COG: lin0151 COG0778 # Protein_GI_number: 16799228 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Listeria innocua # 5 208 6 209 210 210 50.0 2e-54 MTRINDFNEVLNSRKSVKVFDENYKISREEMDEIITKATQAPSSVNMQPWRIAVVESDEM KEKVKESFGFNSRQLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQQLMTEDIKAQLLDWIL PYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYDSDRYV PVLAIAIGKKAQDAHDSVRLPIDDVREFL >gi|224999841|gb|ACJC01000159.1| GENE 15 16383 - 16748 432 121 aa, chain + ## HITS:1 COG:no KEGG:SERP1977 NR:ns ## KEGG: SERP1977 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 121 1 121 121 173 100.0 2e-42 MSKKQVIFRVIIILIISLILAIAFFFGLKAYQGHKNLELIDSYMSDHHLNDKVKKDKTSY STKKGLYYKEVVFKDEPNVTYVIQPISTSKGIFIEGFDSETKKSIKKAKHSDFDQKYKPS K >gi|224999841|gb|ACJC01000159.1| GENE 16 16915 - 18195 1459 426 aa, chain + ## HITS:1 COG:SA2172 KEGG:ns NR:ns ## COG: SA2172 COG1301 # Protein_GI_number: 15927962 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Staphylococcus aureus N315 # 1 426 1 425 425 600 82.0 1e-171 MALFKKKISLPTQVIIALVLGVIAGLLLYGQDDVANYIKPFGDVFLNLIKMIIIPIVFCS LALSISNLGDSKKVGSYGWKAILYFEIITTIAIGLGLIIGNLFKPGSGLDPDKLPKGDIT KYQSSAHSAEQATTYGNHLIDTLVHIVPTNLFESMAKGELLPIIFFAVFFGLGLAAIGEK AEPVKGFLSGTLEAVFWMINKILKLAPIGVFAFICTTVMTFGASALIPLFKLLVVVVFAM VFFVIVVLGIVARMVGISIFSIMKILKSELLLAFSTSSSEAVLPIMMKKMERFGSPKDVT SFVIPIGYSFNLDGSALYQSIAALFVAQMYNMHLSLTQQLVLMATLMIASKGMAGVPGVS IVVLLTTLSSMNIPAQGLALIIGVDRLLDMVRTCVNVIGNALSTVVIAKWENVYDKEKGR NYLNSI Prediction of potential genes in microbial genomes Time: Sun May 29 08:08:51 2011 Seq name: gi|224999840|gb|ACJC01000160.1| Staphylococcus epidermidis W23144 contig00204, whole genome shotgun sequence Length of sequence - 27150 bp Number of predicted genes - 22, with homology - 22 Number of transcription units - 16, operones - 6 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 96 - 148 11.1 1 1 Tu 1 . - CDS 185 - 535 532 ## SE1963 hypothetical protein - Prom 560 - 619 7.1 - Term 665 - 708 7.0 2 2 Op 1 1/0.556 - CDS 726 - 1148 387 ## COG3871 Uncharacterized stress protein (general stress protein 26) 3 2 Op 2 . - CDS 1221 - 3326 1138 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 3428 - 3487 9.4 - Term 4367 - 4412 1.1 4 3 Tu 1 . - CDS 4512 - 4889 174 ## SERP1969 hypothetical protein - Prom 5040 - 5099 6.0 + Prom 4949 - 5008 5.2 5 4 Tu 1 . + CDS 5043 - 6488 1791 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 6524 - 6589 11.6 - Term 6517 - 6570 10.2 6 5 Tu 1 . - CDS 6578 - 7525 753 ## COG0598 Mg2+ and Co2+ transporters - Prom 7579 - 7638 6.8 + Prom 8009 - 8068 10.4 7 6 Op 1 4/0.000 + CDS 8150 - 9382 938 ## COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC 8 6 Op 2 . + CDS 9394 - 9981 796 ## COG4549 Uncharacterized protein conserved in bacteria + Term 10054 - 10102 -0.9 + Prom 9995 - 10054 9.0 9 7 Op 1 . + CDS 10204 - 10620 508 ## SERP1964 hypothetical protein 10 7 Op 2 . + CDS 10689 - 11090 432 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 11106 - 11155 6.1 - Term 11094 - 11141 9.5 11 8 Tu 1 . - CDS 11154 - 12146 1186 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 12233 - 12292 9.6 + Prom 12238 - 12297 8.4 12 9 Op 1 . + CDS 12389 - 12919 428 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 12958 - 13013 1.6 + Prom 13074 - 13133 8.0 13 9 Op 2 . + CDS 13200 - 15365 1947 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Term 15394 - 15441 10.2 + Prom 15372 - 15431 8.8 14 10 Tu 1 . + CDS 15494 - 16141 641 ## SE1947 TpgX protein - Term 16182 - 16241 7.7 15 11 Tu 1 . - CDS 16273 - 17925 1396 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 17986 - 18045 9.1 16 12 Tu 1 . + CDS 18302 - 19903 1787 ## COG1620 L-lactate permease + Term 19940 - 19987 9.0 - Term 20047 - 20103 10.6 17 13 Tu 1 . - CDS 20107 - 21252 1244 ## COG0438 Glycosyltransferase - Prom 21392 - 21451 13.0 + Prom 21362 - 21421 10.1 18 14 Tu 1 . + CDS 21584 - 23062 1428 ## COG0579 Predicted dehydrogenase + Term 23075 - 23128 11.0 - Term 23054 - 23121 12.3 19 15 Op 1 40/0.000 - CDS 23207 - 24562 1196 ## COG0642 Signal transduction histidine kinase 20 15 Op 2 . - CDS 24555 - 25229 678 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 25250 - 25309 5.7 + Prom 25212 - 25271 8.4 21 16 Op 1 36/0.000 + CDS 25361 - 26413 967 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 22 16 Op 2 . + CDS 26413 - 27081 208 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) Predicted protein(s) >gi|224999840|gb|ACJC01000160.1| GENE 1 185 - 535 532 116 aa, chain - ## HITS:1 COG:no KEGG:SE1963 NR:ns ## KEGG: SE1963 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 116 1 116 116 176 96.0 2e-43 MKNKKGLGIGLIAVMVIVCIVLVIMMFVGGKKDSYYGIMKDSTTIDKMINTKNEKIEKNV ELPKDANVSVNKEDFVMLFKDEKTGKITKVKKVDHDDVPHGLMSKIHDMGNMNHGM >gi|224999840|gb|ACJC01000160.1| GENE 2 726 - 1148 387 140 aa, chain - ## HITS:1 COG:SA2170 KEGG:ns NR:ns ## COG: SA2170 COG3871 # Protein_GI_number: 15927960 # Func_class: R General function prediction only # Function: Uncharacterized stress protein (general stress protein 26) # Organism: Staphylococcus aureus N315 # 1 140 1 140 140 195 73.0 2e-50 MNKQQVTRAIEKVLSSSKIGVLSTAHHNKPNSRYMVFYNDDLNLYTKTNINSLKVEEIEN NPDAHILLGYNETTNNSFVEIDATIEVVKDQKVIDWLWETQDKTFFNSKEDPELCVLKVI PRSIKLMNDDELDTPATIEL >gi|224999840|gb|ACJC01000160.1| GENE 3 1221 - 3326 1138 701 aa, chain - ## HITS:1 COG:SA2169 KEGG:ns NR:ns ## COG: SA2169 COG2207 # Protein_GI_number: 15927959 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 701 1 701 701 753 57.0 0 MTCFLNIYKEYHSPPERNINRIILMFSLTNDLKITINGETKDLGNHIAIINQSDIYFINS ASNLVLLSIPVIYFYSKDNKFFKCYFDRHLLQSSSFVKTIILQAIQHLIKGENQDEQSIS KIIQTLLKEAVIRYKKKYIPQIAVNHSVFTEGLTFIHSKVSQSLSLREVAQHCNISESYC SNLFARYLNMNFKDYFTSLKVIDSIKRLLSSEDSINAISEQSGFSSHTNFTNQFKNYLGC SPKQYRTINSKLDPLPSISFSDTDFSQYIELINQFEFSDHLATETTERDINEFYPQDQTK NSKAFIRFQNFNELFQFVFNEYYNIDLTSMPQAVIFINDITDISTREVNFNLLNRCFEKL FEKNIGLAMRLTSTNEFESIKEIILLFLNSHQDYKMNKKMVKFMLVFETENMSVNDIHLC HLKIKNKNKAIRYSITVEGLLHQNSSIDRTYDMMKRLNFDYYFIDIENLETKNSLITKRK SYLHSSTHFENYKQFILDSGIPSTKFVYNNLSLKCFKYTNNGTYPLQLSDLVCHLVALMR YGGGVSYQLIEDESPFIALFNRYGSPLPLMHLYKLIESFLNEPLEIANNFLMSRKDGNYH FLLFNKINDRYLSDSQQRYVFKNTLSTNSLIIIKTLNHEHGAIHNLLPQTKQQFYIERSI LDELDKSNQPKTELAIQHDHHLPFQVTLKHDEVKYICFKPS >gi|224999840|gb|ACJC01000160.1| GENE 4 4512 - 4889 174 125 aa, chain - ## HITS:1 COG:no KEGG:SERP1969 NR:ns ## KEGG: SERP1969 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 125 1 125 125 215 96.0 3e-55 MKERGKIEKLWREEKYRVLFHDQNAYHSIRTLLKSPTTLDEVEEHIAHALTITPTKGSVI NAFEHMWGYFKKQCTQYEKQHSRELKELYIENQIDYFELLSFLKNLADKYAVEYLQQSTI LNITK >gi|224999840|gb|ACJC01000160.1| GENE 5 5043 - 6488 1791 481 aa, chain + ## HITS:1 COG:SA2167_2 KEGG:ns NR:ns ## COG: SA2167_2 COG1263 # Protein_GI_number: 15927957 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 96 480 1 385 385 647 88.0 0 MSYKKSAEEILKAIGGEENLDAMAHCATRLRLVLNDESKVDEDTLSNMDVVKGTFSTGGQ YQIIIGSGTVNKVFNELEKITGKEASTTSEVKDKSSKHMNPFQKFVKMLSDIFVPIIPAI VAGGLLMGLNNIFTAEDLFYDGKSIIDVHSQFSGLADMINIFANAPFTLLPILIGFSAAK RFGGNPYLGAALGMILVHPGLMSAYDFPKALEAGKVIPHWDVFGLHINEVGYQGQVLPML VATYILATIEKWLRKVIPTVLDNLLTPLLSIFITAFITFLFVGPVTRQLGYWLSDGLTWL YEFGGAIGGLIFGLLYAPIVITGMHHSFIAVETTLIADATKTGGSFIFPIATMSNIAQGG AALAAFFIIKQNKKLKGVASAAGISALLGITEPAMFGVNLKLRYPFIGAVAGSGIGAAYI SFFKVKAIALGTAGLPGFISINPTHAGWLHYLIGMIIAFLVSVVVTLVLSRRKANKTAVE S >gi|224999840|gb|ACJC01000160.1| GENE 6 6578 - 7525 753 315 aa, chain - ## HITS:1 COG:SA2166 KEGG:ns NR:ns ## COG: SA2166 COG0598 # Protein_GI_number: 15927956 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Staphylococcus aureus N315 # 1 315 1 314 314 442 89.0 1e-124 MITAYKHALHHPSQIIETEINHSASWINVVEPDREEIEGLMEFYNIPEDFIRDPLDSEES ARIEYDEDTGYSLIIIDLPIVNSTNRRVLSFVTIPLGIIIGNGIVMTVCDAENEFLENFA KQEDINLKFHSRFALEILTTIANHYNRNLRLLNKSRIRIERELKNNITNKQLFKLMEVEK SLVYFLAALKGNDTIIKKLFRLPAIKRFEEDEELLEDLVIENNQAIETTELHQRILESIT SSYASLLSNDMNNIMKTLTLFTVLLTLPTLVFSFFGMNVPLPIDDHSYVSWIIVVGISLI LVAIVSIFLWKKQKL >gi|224999840|gb|ACJC01000160.1| GENE 7 8150 - 9382 938 410 aa, chain + ## HITS:1 COG:lin2168_1 KEGG:ns NR:ns ## COG: lin2168_1 COG2372 # Protein_GI_number: 16801234 # Func_class: R General function prediction only # Function: Uncharacterized protein, homolog of Cu resistance protein CopC # Organism: Listeria innocua # 8 134 10 136 150 60 29.0 6e-09 MSKFSATLVIMFLITLSPIFQYQASAHATLEKSIPQQQGIIKHKPEVIKLEFNEPVNTKY SSVTLFDDKGKKIKDLKPITTGWSQTVVFSSDQIVNGTNTIEWHTVSADGHEVGDTFEFS VGKVTAKDVDTSSPFYEQSKFWFGLLRYVTEGATFLLIGLFWLNGIAKKRGLRQFNVLPK QSGIAWIMAMSVLVSLVVYMMTLTSDILEDILSFKLEVIMQFPYILSSISLIILFILFVL KDMEKIWYWLISIIMIAVISMSGHVWSQQVPLWSIIIRTIHLIGLTLWLGSLVYLICYAI KVKTDQLTNVRRMLLKVNIIAVIMLVFTGILMAIDETNILTLWNNIKAWSIYLIIKIVGT MTMMLLGLYQTMRALKQRQQVNRYALIFELLIGIILIFAGIMMSQMNIPS >gi|224999840|gb|ACJC01000160.1| GENE 8 9394 - 9981 796 195 aa, chain + ## HITS:1 COG:lin2167 KEGG:ns NR:ns ## COG: lin2167 COG4549 # Protein_GI_number: 16801233 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Listeria innocua # 9 192 7 205 205 109 33.0 3e-24 MLRKLLPLTLIVFFGLGFFKFADAHVTLNPNESEPESYDKYDVRVPVEQNDHTVKVELDV PKGLNVESVKPVQGFEHHFSKDKKGNIIKVTWTATGKGIGPHEFIEFPIVVANPKEEGKF KWNAIQTYDNGDVVKWTGKEDSEHPAPTTTVKKGANPNDTHSDSSQGDSIALWIVAIVAI VISLIALFKQARSKK >gi|224999840|gb|ACJC01000160.1| GENE 9 10204 - 10620 508 138 aa, chain + ## HITS:1 COG:no KEGG:SERP1964 NR:ns ## KEGG: SERP1964 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 138 1 138 138 187 99.0 7e-47 MRRLLYSFLFYMIIGLLSGFYYRELTKAHDFVGDTQLSLVHTHTLILGMFMFLLLLPLEK VFKLSSYYLFNWFFFVYHLGVLITISMMTVKGTFQVIGKKFSPEMFAGFAGIGHTGMLAG LLLLFFLLRQAILTEPKK >gi|224999840|gb|ACJC01000160.1| GENE 10 10689 - 11090 432 133 aa, chain + ## HITS:1 COG:SA2161 KEGG:ns NR:ns ## COG: SA2161 COG0454 # Protein_GI_number: 15927951 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 133 1 133 133 177 68.0 3e-45 MTKIHFEAPSPEDYCNLRVNAGMSSKSIEAAIKGLPHACFNVTLYENDMLIGMGRVIGDG GTVFQIVDIAVKDTYQGLGHGMTIMHEIMKYIESVAEEGTYVSLIADYPADQLYEKFGFK STEPYSKGMYIKY >gi|224999840|gb|ACJC01000160.1| GENE 11 11154 - 12146 1186 330 aa, chain - ## HITS:1 COG:SA2160 KEGG:ns NR:ns ## COG: SA2160 COG0604 # Protein_GI_number: 15927950 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 1 330 1 332 334 482 70.0 1e-136 MVEKFKAFVVDQDDNGIVSNSYKELTKDDLPDGDVLIKVHYSGINYKDALATQDHNKIVK QYPMVPGIDLAGTIEETNAPGFEVGDKVIVTSYDLGVSHYGGFSEYARVKSEWVIELPED LTLEEAMIYGTAGYTAGLAIEQLEKSGMSIEGKEVLVRGATGGVGTISLLMLNNLGYDVI ASTGRDDAEEKLKKLGAKEVIGRLPEDNSKPLEKRTWQAAIDPVGGENLPYIVKRLDNNG SVALIGMTGGNNFETTVFPFILRGTSIIGIDSVFTPIKLRKRVWRRLAKDLKPQQLHDIK HVISFDEIPKAIDQVINHHNTGRIVIDFNV >gi|224999840|gb|ACJC01000160.1| GENE 12 12389 - 12919 428 176 aa, chain + ## HITS:1 COG:SA2159 KEGG:ns NR:ns ## COG: SA2159 COG0454 # Protein_GI_number: 15927949 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 168 1 168 171 163 50.0 1e-40 MGERIRSVQITEVEQLQLIAKRTFFTTFRESYSDEDFKKFFNDAYDIDMLRKELEQSNSF HYFYEVDQNIVGFLKLNINDAQTENKGQAYLEIQRIYFDEAFQGSGRGQLFINLAIDQAI KFGKSKIWLGVWEHNPKALSFYKNRGFRVTGSHQFYTGSVVDNDLIMELDVPTNYK >gi|224999840|gb|ACJC01000160.1| GENE 13 13200 - 15365 1947 721 aa, chain + ## HITS:1 COG:SA0244 KEGG:ns NR:ns ## COG: SA0244 COG1887 # Protein_GI_number: 15925957 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Staphylococcus aureus N315 # 355 716 30 389 389 355 50.0 2e-97 MNKLTIIVTYYNAEEYITGCLESIKQQRTQDFNLIIVNDGSTDQSKKLMDEAIKDYDKNI RFIDLDENSGHAHARNIALEEVETPYFMFLDADDELASYAITFYLEKFNDTDGLIAPIHS FTTQRPQFVDLDRVRVEYFNAKGNINSFLRKQSACNIIFRTAIVKAHHIRFNENLNTYVD WSFVLEYMKYVNKFVRIFNFPFYFRGEVYDPFETLTLSEQNFDILFKDYVNSFYDAIKRA TNPKVREFIVTKMGNKIANEFEPTRYDINERYQTHKDTLVELSKFLHVHLVKNQKLINKI ETILLMNNETDKAFKVNQFRKTLRHVKNIVLRRKNKERSLYDLTDKEDNVKPKTIVFESF GGKNYSDSPKYIYEYMQKYYPNYRYIWSFKNPDKNVVPGSAEKVKRNSAEYYQAYSEASH WVSNARTPLYLNKKENQTYIQTWHGTPLKRLANDMKVVRMPGTTTPKYKRNFNRETSRWD YLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLNEIRTHLNLPSDKKV IMYAPTWRDDEFVSKGKYLFELKIDLDNLYKELGDDYVILLRMHYLISNALDLSGYENFA IDVSNYNDVSELFLISDCLITDYSSVMFDYGILKRPQFFFAYDIDKYDKGLRGFYMNYMK DLPGPIYTEPYGLAKELKNLDKVQQQYQEKIDAFYDRFCSVDNGKASQYIGDLIHKDIKE Q >gi|224999840|gb|ACJC01000160.1| GENE 14 15494 - 16141 641 215 aa, chain + ## HITS:1 COG:no KEGG:SE1947 NR:ns ## KEGG: SE1947 # Name: not_defined # Def: TpgX protein # Organism: S.epidermidis # Pathway: not_defined # 1 215 1 215 215 249 96.0 6e-65 MKKVLASATILSLMLVGCSNGGNDESSHKDDSSKTEQKDKSSSQHDSKKDSKRNDTINKQ DNQENNNNKERTSNQNPNVGEQRTSERPTTNSNGNSSDNQNKQQQSVQDNQNKYVAPYQS ENATRVARYLSPFEGDRSQALQQLPNFETALSIAKNEANMYGSENKSYNDYSIEQTEDGF RYVFSFKDPSKSNTYSIVTLNRQGQPTVVDPNFQP >gi|224999840|gb|ACJC01000160.1| GENE 15 16273 - 17925 1396 550 aa, chain - ## HITS:1 COG:SA2157 KEGG:ns NR:ns ## COG: SA2157 COG1887 # Protein_GI_number: 15927947 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Staphylococcus aureus N315 # 1 549 10 553 557 462 44.0 1e-130 MDKLKEQMERALSDGYTHVIPYSNEIQIHQSMIKAITLPKTSFLVDYTINNYYLNDCKYF GLDFVDFEDWVKNINLYPNVIYEINSTLELIDKFEVENIFDLALLTILKGHIAVEGHVVL DFKEPLKTSKGFWRSFDRNDLTYRDKFFLNTIAYAHKQRIPFTRVPFNDHDSIRYYDSVL LSTKFKAPRWLVTPIKNYSVRKHKEISYIYKKDSSKLKNHVVFLGFDFGYRGNSKYLFNY FVKHNPMIESYFITDERTGPHFISTNDENVKNLIETATFVITESYIPDDIHPNGKIIQLW HGTPIKKLFLDSKEPHQNLNIYNYRARKYNKWTQQDYLVVDSEESKTYFESAFPSQKIDI LPVGYPRNNYLLNRINDVGLHKRIFSEINIDPTKRVLLYAPTWKTNSSDDDVFPINEQLL KHYNVIYKGHVESQNDLVPEGVIIPPNNIETQDLIIISDVVLTDYSSIIFDALTVDKKGC LYTPNHSQYVEERGVYQDVIDTLKPVWYTDAELLMNDLITDSIPQLNNKYTNKNNQSFEY ISKLISNQLK >gi|224999840|gb|ACJC01000160.1| GENE 16 18302 - 19903 1787 533 aa, chain + ## HITS:1 COG:SA2156 KEGG:ns NR:ns ## COG: SA2156 COG1620 # Protein_GI_number: 15927946 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Staphylococcus aureus N315 # 1 532 1 532 532 715 82.0 0 MLVESFNPFGNLLLSSLIAAIPIILFLLCLTVFKMKGIYAAITTLVVTLLIAIPFFKLPV GIASGAVVEGFFQGIFPIGYIVIMAVLLYKITLKSGQFATIQDSITSISQDQRIQLLLIG FSFNAFLEGAAGFGVPIAICALLLAQLGFRPLQAAMLCLVANAASGAFGAIGIPVGVVDT LNLPGHVEAMGVSQTSTLTLAIINFFIPFLLIFIVDGFKGIKETLPSILVVSVTYTVLQG LLTVFNGPELADIIPSLASMLALALFSKKFQPKNIFRVQKDVKPEAPKKLKGKEVLFAWS PFIILTVIVMIWSAPSFKALFAPKGKLSALVANFDLPGTFSNISHKPITLSLNLIGQTGT AILITIIITVLMAKKVNFGDAGRLFVEAFKELWLPIITICFILAISKITTYGGLSNAMGQ GISKAGSIFPILSPILGWIGVFMTGSVVNNNSLFAPIQASVAQQIGTSGSLLVASNTAGG VAAKLISPQSIAIATAAVKEVGKESELLKMTLRYSIGLLVFVCIWTFILSFIL >gi|224999840|gb|ACJC01000160.1| GENE 17 20107 - 21252 1244 381 aa, chain - ## HITS:1 COG:HI1698 KEGG:ns NR:ns ## COG: HI1698 COG0438 # Protein_GI_number: 16273585 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Haemophilus influenzae # 1 345 1 318 353 100 25.0 5e-21 MKSFTFFMHNIYAMGGTVKSVTQLANTLAEKGHPVTIISVFRGTDSPYFELHSAIKVKVL VDYRLKLKNTRAITANRIKKYTPFLNTKVISQFEPGKSQFSSYVEKKMIKAIKHIKTDVL VGTRASFNILISKYAKAEIVTIAMEHMNFDAHPDQYQKEIIAAYRNINKITTLTVADQQK YQSQLKTPVYVIPNMVTEKRIAAPKKNRIISAGRLEYEKGYDLLLESIRLIQEDLRQLNY DVHIYGSGSKKTLLVDFINQYHLNDLIKIYEPTQELNNKLAQSKIVVVPSRNEGFGMIIL EAMVQDNIVISFEGNVGPDSIINNGDNGYLVNYENVSELAKRIDLTTQHYNELDHIVENS KDTLKQFSPDHIYQLFMSMFK >gi|224999840|gb|ACJC01000160.1| GENE 18 21584 - 23062 1428 492 aa, chain + ## HITS:1 COG:SA2155 KEGG:ns NR:ns ## COG: SA2155 COG0579 # Protein_GI_number: 15927945 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Staphylococcus aureus N315 # 1 492 20 511 511 819 79.0 0 MNTQHSKTDVILIGGGIMSATLGTLLKELTPEKDILLFERLSQPGEESSNVWNNAGTGHS ALCELNYTKEGQDGSVDITKAIHINEQFQLSKQFWAYLIREGHIESPDKFIQSVPHMSFV KGEENVKFLKSRVASLQKNVLFEKMKISQDPEKINSWVPLMMEGRQSDEAIAITYDETGT DVNFGALTKKLIANLQQKNVGINYKHEVLDIKKLNNGNWQVVVKDLNTSNVMNYESKFVF IGAGGASLPLLQKTKIKESKHIGGFPVSGLFLRCKNPDVIHRHHAKVYGKAEVGAPPMSV PHLDTRFVNGEKSLLFGPFAGFSPKFLKNGSYLDLVKSVKPNNMITMLSAGVKEFNLTKY LVSQLMLSNEERINDLRVFLPEAKDEDWEVITAGQRVQVIKDTDKSKGQLQFGTEVITSE DGSLAALLGASPGASTAVDIMFDVLQRCYKSEFKSWEPKIKEMVPSFGLKLSDHEDMYHS INEEVKKYLNVK >gi|224999840|gb|ACJC01000160.1| GENE 19 23207 - 24562 1196 451 aa, chain - ## HITS:1 COG:SA2152 KEGG:ns NR:ns ## COG: SA2152 COG0642 # Protein_GI_number: 15927942 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 449 1 452 457 513 65.0 1e-145 MFKTLYSRIAIYAITVILFSALMSFLFTNIYYHFHLKASNDAKIMRTLKEAREYERTQKP KPLDTYLKHLGQMNYQIMTVNEHGTKHFYGETFRKNTISQSAIKKVLNGEDYHGIKNKPY AFFVTGFFDNETDNTVGIQFKTDDGALAVFMRPDIGETFSEFRIFLAVLITLLLIISISL VIASTYSIIKPVTALKNATTRIMKGDFSTPIKQTRHDEIGTLQSRFNTMRQNLGQVDQMR QHFVQNVSHEIKTPLTHLQRLLTQLELTQNEEEKQLYINEMFEITNQVSELTKELLLLSE LDNASHLTFNDNVHLNTLIKDIIRHEQFRTDEKDLVLFTELEDLYFRGNERLLHQAFNNL IINAMKYAPQNSMINVTLTSTNHLIIFNIENDGTIAEEDAKHIFDRFYKLSDESSSNGLG LAITQSIIHLHHGNITLTSDDKTQFIVKLFI >gi|224999840|gb|ACJC01000160.1| GENE 20 24555 - 25229 678 224 aa, chain - ## HITS:1 COG:SA2151 KEGG:ns NR:ns ## COG: SA2151 COG0745 # Protein_GI_number: 15927941 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 329 70.0 2e-90 MINCLIVDDDEKLLQYVSSHLERESIQTHTFTSGEASLDFLENKNVDIAIVDIMMSGMDG FELCQTLKDDYHIPVIMLTARDALSDKERAFLSGTDDYVTKPFEVKELLFRIKAVLRRYQ INADNELQLGNLILNQSYMEITVGSKTMNLPNKEFQLLFLLASNPKHIFTRDDIIEKIWG FDYEGDDRTVDVHIKRLRQRLSKLKSSVSIQTVRGQGYRVDQNV >gi|224999840|gb|ACJC01000160.1| GENE 21 25361 - 26413 967 350 aa, chain + ## HITS:1 COG:SA2150 KEGG:ns NR:ns ## COG: SA2150 COG0577 # Protein_GI_number: 15927940 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 350 1 351 351 323 53.0 3e-88 MNLAWKEIKFYKFRFILIMFIIFLMAIMVLFISGLAQGLARENISIFDQIKGNQFVVQKM KEPQLEKSILSQSKQDNISKIIDEKPFKMAGKTFKINGNEENVMAINSVKNHQPNLKSGH YPKNENQIAINEKLTAEGLYLDDKVKVKGDDTTYKVVGILKNTMYSHSNIVMMDQSKIEQ SSNVATFYVTNQLSKSDKNKINHIKGVQTATTDDITSNIASYKAEQTPLNMMIISLYVIT AIVLSAFFYVMTIQKTSEIGILKAIGITTKHLLASLIIQISMITFIGVAIAEVVILLISK ILPVSMPFHIDMHNIIIVLVVFMIVGLIGTSLSFIKLIKIDPIEAIGGGQ >gi|224999840|gb|ACJC01000160.1| GENE 22 26413 - 27081 208 222 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 21 200 20 199 223 84 27 6e-16 MGLVVKDISKTFGEKSSKTEVLKDINFEVKDGEFIILNGASGSGKTTLLTILGGLLSQTS GDVVYEGKSLFERHTNKAHLRLNDIGFIFQASHLVPYLKVLDQLTLVGKEAGMSRKEAQA RAKALLTKIGLEEQLNSYPHMLSGGQQQRVAIMRALMNHPKIVLADEPTASLDASRAQEV VEMIRKQIKDNQMIGIMITHDESLFKYADRIIELYDGKIKNS Prediction of potential genes in microbial genomes Time: Sun May 29 08:09:12 2011 Seq name: gi|224999839|gb|ACJC01000161.1| Staphylococcus epidermidis W23144 contig00205, whole genome shotgun sequence Length of sequence - 30982 bp Number of predicted genes - 29, with homology - 29 Number of transcription units - 21, operones - 7 average op.length - 2.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 58 - 112 12.2 1 1 Tu 1 . - CDS 139 - 1095 528 ## COG1434 Uncharacterized conserved protein - Prom 1137 - 1196 11.5 + Prom 1199 - 1258 11.7 2 2 Tu 1 . + CDS 1283 - 1738 524 ## COG1846 Transcriptional regulators + Term 1838 - 1883 -0.8 + Prom 1893 - 1952 7.9 3 3 Op 1 1/0.636 + CDS 2018 - 3406 1184 ## COG4640 Predicted membrane protein 4 3 Op 2 . + CDS 3472 - 4674 701 ## COG0477 Permeases of the major facilitator superfamily + Term 4820 - 4869 7.4 - Term 4648 - 4706 6.6 5 4 Tu 1 . - CDS 4710 - 5261 378 ## COG1309 Transcriptional regulator - Prom 5350 - 5409 9.4 + Prom 5309 - 5368 8.5 6 5 Op 1 19/0.000 + CDS 5402 - 6049 806 ## COG1566 Multidrug resistance efflux pump 7 5 Op 2 . + CDS 6062 - 8038 2305 ## COG0477 Permeases of the major facilitator superfamily + Term 8053 - 8100 11.7 - Term 8169 - 8216 -0.8 8 6 Tu 1 . - CDS 8218 - 8850 488 ## SERP1942 hypothetical protein - Prom 8971 - 9030 6.8 + Prom 8862 - 8921 8.5 9 7 Tu 1 . + CDS 9068 - 9967 531 ## COG0657 Esterase/lipase 10 8 Op 1 . - CDS 10106 - 10492 378 ## SERP1940 hypothetical protein 11 8 Op 2 . - CDS 10495 - 10971 587 ## COG0824 Predicted thioesterase - Prom 10992 - 11051 5.8 + Prom 10994 - 11053 7.4 12 9 Op 1 1/0.636 + CDS 11078 - 12025 587 ## COG0598 Mg2+ and Co2+ transporters 13 9 Op 2 . + CDS 12069 - 13118 1144 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 13163 - 13209 -0.4 - Term 13149 - 13197 5.1 14 10 Tu 1 . - CDS 13274 - 14482 1125 ## COG0786 Na+/glutamate symporter - Prom 14532 - 14591 9.1 + Prom 14595 - 14654 10.8 15 11 Op 1 5/0.182 + CDS 14801 - 15121 266 ## COG1695 Predicted transcriptional regulators 16 11 Op 2 . + CDS 15118 - 15678 439 ## COG4709 Predicted membrane protein 17 11 Op 3 . + CDS 15675 - 16478 805 ## SE1920 hypothetical protein + Term 16541 - 16572 -0.5 - Term 16585 - 16628 1.3 18 12 Tu 1 . - CDS 16633 - 17250 692 ## COG2094 3-methyladenine DNA glycosylase - Prom 17290 - 17349 11.8 + Prom 17279 - 17338 12.6 19 13 Tu 1 . + CDS 17449 - 18021 389 ## COG3152 Predicted membrane protein + Term 18038 - 18080 11.3 20 14 Tu 1 . - CDS 18529 - 20139 1493 ## COG1069 Ribulose kinase - Prom 20242 - 20301 8.3 + Prom 20554 - 20613 5.5 21 15 Tu 1 . + CDS 20730 - 21740 301 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 21783 - 21821 5.1 22 16 Tu 1 . - CDS 21818 - 22498 656 ## COG2258 Uncharacterized protein conserved in bacteria - Prom 22590 - 22649 7.6 + Prom 22584 - 22643 4.4 23 17 Tu 1 . + CDS 22664 - 23356 739 ## COG0120 Ribose 5-phosphate isomerase + Term 23535 - 23579 -0.1 - Term 24183 - 24238 11.4 24 18 Tu 1 . - CDS 24319 - 25467 924 ## SERP1920 abortive infection family protein - Prom 25508 - 25567 14.8 + Prom 25622 - 25681 11.7 25 19 Tu 1 . + CDS 25715 - 26650 1116 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family + Term 26700 - 26754 11.2 + Prom 26984 - 27043 6.1 26 20 Op 1 1/0.636 + CDS 27122 - 28240 1222 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Prom 28242 - 28301 3.9 27 20 Op 2 . + CDS 28326 - 29207 1212 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 29322 - 29360 4.1 + Prom 29399 - 29458 7.8 28 21 Op 1 . + CDS 29489 - 30100 488 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 29 21 Op 2 . + CDS 30144 - 30743 336 ## SERP1915 hypothetical protein + Term 30922 - 30965 5.8 Predicted protein(s) >gi|224999839|gb|ACJC01000161.1| GENE 1 139 - 1095 528 318 aa, chain - ## HITS:1 COG:SA2148 KEGG:ns NR:ns ## COG: SA2148 COG1434 # Protein_GI_number: 15927938 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 22 305 22 305 322 243 50.0 4e-64 MLLFLCFLIELLLIVSLYTKQSFTLNLFSFILYTIIGFVMMTYHVVTVSIPYEMFIIVIV AMILLLIKYRYIFKLQTGRFFILKLSHHFYTMGLFAVSCLYISTIPLIIINSLALWVATI AFSTIYSFIGYLSWSTAFENHQYHKHVKLIMVLGAGIFSEEVTTLLAARLDKALSVYHSQ RTKPIIIVSGGQGPDEPISEALAMKRYLIAHNVPENYIFMENQSTNTRTNFLYSKSIIHS MMPTSSQMLCVTSQFHVLRALKFAKKAHLSFDGIGSRTPYHFLAQSMIIDFLGLMYQYKT ILTIYFAMLFWLAILQTI >gi|224999839|gb|ACJC01000161.1| GENE 2 1283 - 1738 524 151 aa, chain + ## HITS:1 COG:SA2147 KEGG:ns NR:ns ## COG: SA2147 COG1846 # Protein_GI_number: 15927937 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 149 1 149 151 166 63.0 2e-41 MVRRIEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVGQITEK QGVNKAAVSRRVKKLLNAELVKLEKPHSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASD MTSDFDSKEIEKVRQVLEIIDYRIQSYTSKL >gi|224999839|gb|ACJC01000161.1| GENE 3 2018 - 3406 1184 462 aa, chain + ## HITS:1 COG:SA2146 KEGG:ns NR:ns ## COG: SA2146 COG4640 # Protein_GI_number: 15927936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 460 1 456 460 442 57.0 1e-124 MSQCPNCGHQVKDDTSQCPNCGQLLTKKKKRKIKDQSSQSSNENSTNIRLRKIVPIGISV FILILIIVLFFLLRNYNSPNAQAKILVNAVDNNDAQKVATLLSTKNKKVDDVEAQQYINY VKKEVGIKKYIRDINNTVDKLNKSNSSVASYIQTKSGQDVLKISKNGTKYLIFDNMSFTA PTKKPIIKPKVETKYEFRTSGKKKTVIAEANKNTPLGEFIPGTYHLPSKKITENGTFNGH LNFDFRESHSEIVDVAEDYDQSFINIKFKGASKLSDKSEKVQINDRTFTYSHSKEFGPYP KTKDITISATGKAKGKTFSSETKTISADDLKDNTKVTLEFDSDKINSYVEKKEKEENSLK NKLTEFFTGYATAMNSAFNMNDFNFISSYFKKNSSIYTSMKSNFQNRTNVTMISPQVLSV HRSGHTVRTTIQHIDHIGNYINKDYELEIDNDDSNMQLVKEL >gi|224999839|gb|ACJC01000161.1| GENE 4 3472 - 4674 701 400 aa, chain + ## HITS:1 COG:SA2145 KEGG:ns NR:ns ## COG: SA2145 COG0477 # Protein_GI_number: 15927935 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 7 395 10 399 402 418 70.0 1e-116 MYQSENQSFLFIVILGSLTAFGPLAIDMFLPGLPNISHDFDISASTTQLTISFFMIGLAL GNFLAGPISDITGRKKPLIFSLIIFTIASLGIIFVTNIWIMIILRFIQGLTGGAGAVISR AIASDMYSGNALTKFLSLLMLVNGIAPIIAPALGGIILNYGPWRIVFVILTMFGIVMLIG TLFKVPESLEKSLRVNSNIGTMLINFKELFKTPRFVLPMLIQGVSFVLLFTYISASPFIV QTIYGLTPLNFSIMFAFIGVTLIISSQLTGKLVDYIDRLLLLRIMSTIQVIGVIIVSLTL LNHWTFWILSCGFVILVAPVTGIATLGFSIAMDESKGAKGSSSSLLGLFQTLLGGIISPL VGIKGESNAIPYIIVIVITAIILMILQLVNVKIFKKAKIH >gi|224999839|gb|ACJC01000161.1| GENE 5 4710 - 5261 378 183 aa, chain - ## HITS:1 COG:SA2144 KEGG:ns NR:ns ## COG: SA2144 COG1309 # Protein_GI_number: 15927934 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 182 1 182 184 194 53.0 1e-49 MKQRAKYKIIKSLIELLEYYPFDEITIKMICAYSGVNRSTFYDHFQDKYQLLDKIQNYHL NKYMSLLQSFYNDFHHIKTDQKKLYKFFLLIAKYIKRKEAFYRATLVTYPNKDIALDYIN ATKTCYEKVMDRYETSINNKRMFIIYSVGGQAGVFIDWLRNGCLEAPQEVAQVLLANTIK LQR >gi|224999839|gb|ACJC01000161.1| GENE 6 5402 - 6049 806 215 aa, chain + ## HITS:1 COG:SA2143 KEGG:ns NR:ns ## COG: SA2143 COG1566 # Protein_GI_number: 15927933 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Staphylococcus aureus N315 # 1 215 1 215 215 315 82.0 3e-86 MKKMILINVITIIVLVVIGVLGFWFWHNTTSYVTTDNAKVDGDQIKISSPASGQIKSLNV KQGDKLDKGDKVAEVLAQGQDGQSKDMNIKMPQKGTIVKTDGIEGSMTQAGNPIAYAYNL DDLYITANVDEKDISDVEKGNDVDVDIDGQKASIKGKVEEVGQATAASFSLMPSSNSDGN YTKVSQVVPVKISLDSNPSKNVVPGMNAEVKIHKN >gi|224999839|gb|ACJC01000161.1| GENE 7 6062 - 8038 2305 658 aa, chain + ## HITS:1 COG:SA2142 KEGG:ns NR:ns ## COG: SA2142 COG0477 # Protein_GI_number: 15927932 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 649 1 636 643 885 73.0 0 MTATFIIIYIVVALILIGFINFFLIKRKRKNKDKRVEQRSTIDSKRESNQSKFKASDLEQ TTKSNTDSTQSIDIEDEKRKNHFDSEIDNASQSINTDSKEDRNALSHKNQEEDDASSDVL NPIDPNSTEGRVNERIKNQESNFIFGKGITRGKILAAMLFGMFIAILNQTLLNVALPKIN TEFNISASTGQWLMTGFMLVNGILIPISAFLFNKYSYRKLFIIGLALFTLGSLVCAISFN FPIMMSGRVLQAIGAGILMPLGSNVIVTIFPPEKRGVAMGTMGIAMILAPAIGPTLSGYI VQNYHWNVMFYGMFFIGIIAIVIGLFWFKLYQNTTNPKADIPGIIYSTIGFGSLLYGFSE AGNKGWGSTEIVTMFIVGTVFIIFFILRELRMKAPMLNLEVLKYPTYTLTTIINMIVMMS LYGGMILLPLYLQNLRGFSALDSGLLLLPGALVMGALGPVAGKLLDTIGIKPLAIFGIGI MTYATWELSKLNMDTTYLHIMWIYIVRSFGMAFIMMPIMTAGMNALPPRLISHGNAFVNT MRQLAGSIGTAILVTVMTTQQTNHLSAFSEELDKTNPVIQDHMRELAQQYGGESAAMKVL LEHVNKLASVEGVNDAFIVATIISAIALILSLFLQGKKKAQLSAEKANAEDYPSQQDK >gi|224999839|gb|ACJC01000161.1| GENE 8 8218 - 8850 488 210 aa, chain - ## HITS:1 COG:no KEGG:SERP1942 NR:ns ## KEGG: SERP1942 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 210 1 210 210 338 98.0 5e-92 MSETLQNQKQFNSQFEHQEIHRGKRYGKKKRSWVSLIIQVFVLVLTAITGYSMLKQPIFK ISFVNETINFHQLRNFQDTVTQIGNLNLGNIDQLQQSVDNLIIIFNIFFVLCLISLFVTV ITIIFNRTALKVVNILLLSIMLVITLYFSYIIHTIAQKISESLKQYYLTVSPEQVLTEAD AIHNALILIGCSIALLIVSLFFRNRLPRIK >gi|224999839|gb|ACJC01000161.1| GENE 9 9068 - 9967 531 299 aa, chain + ## HITS:1 COG:SA2140 KEGG:ns NR:ns ## COG: SA2140 COG0657 # Protein_GI_number: 15927930 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 299 2 300 306 407 64.0 1e-114 MKNRMMNRVVNKYILHNRSIFFSSHDEVKKFLEKRSIENSKKHQQPATLNVKSNLDKLTL NDMQVFRFNFRHEKNQKILYLHGGYNTLQPSPFHWRLLDKLTLNTLHEVVLPIYPKSPDY HYLETFKAIRDVYNQLVEEVGADNIVMMGDGSGGGLALSFVQSLINDNQEVPRKLFLLSP LLDATLTNPNITQTLEENDILVSRFGVHQLMKSWANDLPLSDARISPLYGTLKGLPPIYM YGGGREILSPDMHVFTHALEECGNDVEFKEYPKMVHDFPIYPIRQSHKVLKHITKSILE >gi|224999839|gb|ACJC01000161.1| GENE 10 10106 - 10492 378 128 aa, chain - ## HITS:1 COG:no KEGG:SERP1940 NR:ns ## KEGG: SERP1940 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 128 1 128 129 195 91.0 3e-49 MSIREKLVIELMNLKDTVKYELSELNEQQYLFMNGPAPQLMKRAMKMSYILGQKEAIDYL LLLIDTSHENVLLDHCHDYQKQIQRKQFSLQEDIIHQINQSKDFESFLSTYYVNKGKYDI ISKIQTFL >gi|224999839|gb|ACJC01000161.1| GENE 11 10495 - 10971 587 158 aa, chain - ## HITS:1 COG:SA2138 KEGG:ns NR:ns ## COG: SA2138 COG0824 # Protein_GI_number: 15927928 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Staphylococcus aureus N315 # 1 157 2 158 161 159 52.0 3e-39 MNKTFTVTRTVTEDAIDDNNHMHDAYYNIIFSEVINKFNEVHGLSLPERDRLQYTVFTVE THTTFLHELTLGQEFNIELFLYNYDDKRTHFFLRMLIDNQEVVATNEVMMLGIDRTQRRV APFPKHYLNAIQDYAHKQEKIEWTPQLGHSIGIPHKGE >gi|224999839|gb|ACJC01000161.1| GENE 12 11078 - 12025 587 315 aa, chain + ## HITS:1 COG:SA2137 KEGG:ns NR:ns ## COG: SA2137 COG0598 # Protein_GI_number: 15927927 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Staphylococcus aureus N315 # 1 315 1 315 315 417 65.0 1e-116 MTVTVRFQSLSQPLTLVSNVKEIPKDATIIWYDFENATDEENEYLKNHFDFNYLEIDDAI NGDPRVKYKEYDAYQYMIFHSIINDDYSPISLSVFLEGNVLVTYHHKHFPSLKRVAQYNS ENHDSELDCADIVIHILDCMVDKYFNFVYGIEDKVYNFEAKHVDDRYSKSVMENVFQLRS DLIKIKRVLFPMQEVVDTMKQEGNIIKDAKHRMYIQHIDDHLIKQRSVIRTSQEMTNEIR ENYESFTSFRMNSIMQILTLVSVIFSPLTFIAGVYGMNFEFMPELKWHYAYFVCLTLMLI ITIILIIFFKKKKWF >gi|224999839|gb|ACJC01000161.1| GENE 13 12069 - 13118 1144 349 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 1 348 1 348 349 534 76.0 1e-151 MSDSQREQRKNEHVEIAMSQKDALVSDFDKVRFVHHSIPSIDVSQVDMTSHTTKFDLAYP IYINAMTGGSDWTKQINEKLAIVARETGIAMAVGSTHAALRNPNMIETFSIVRKTNPKGT IFSNVGADVPVDKALQAVELLDAQALQIHVNSPQELVMPEGNREFASWMSNIESIVKRVD VPVIIKEVGFGMSKETLQALHDIGVNYVDVSGRGGTNFVDIENERRSNKDMNYLSQWGQS TVESLLESTEFQDRLNIFASGGLRTPLDAVKCLALGAKAIGMSRPFLNQVEQSGITNTID YVESFIQHMKKIMTMLDAPNIECLRQADIVMSPELISWINQRGLHLNRK >gi|224999839|gb|ACJC01000161.1| GENE 14 13274 - 14482 1125 402 aa, chain - ## HITS:1 COG:SA2135 KEGG:ns NR:ns ## COG: SA2135 COG0786 # Protein_GI_number: 15927925 # Func_class: E Amino acid transport and metabolism # Function: Na+/glutamate symporter # Organism: Staphylococcus aureus N315 # 1 402 1 402 402 531 77.0 1e-151 MIEFDAITTLCLACVLYLIGQTIINHVSILRRICIPAPVIGGLLFAILVAILDSFNIVKI KLDSAFIQNFFMLAFFTTIGLGASLKLFKIGGKVMLIYFTFCGIMAICQNIIGVSLAKLL NIKPLLGLTAGSMSMEGGHGNAAAYGKTLQDMGVDSAVAAALAAATLGLVFGGLIGGPIV KYLIKRYDLKPEHRDDSFKNYGIVEYNQSLHTKYKPIQVFFIQFSILVFCMALGTYIGNT FTDLTGVNIPMYVGSMFVAVIIRNATDFIGWDIVDLKMSEQIGDISLGIFLSLALMSIQL TQIYSLAIPLIIIVLVQVVFMVLFSIFILFKGLGKDYDAAVMVGGFIGHGLGATPNAMAN LDVITKKFGNSPKAYLVVPIVGAFLIDLIGVIIVMSFIQLFS >gi|224999839|gb|ACJC01000161.1| GENE 15 14801 - 15121 266 106 aa, chain + ## HITS:1 COG:lin0608 KEGG:ns NR:ns ## COG: lin0608 COG1695 # Protein_GI_number: 16799683 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 1 104 3 106 110 103 51.0 5e-23 MNAQFKKGALELIVLLIIKKEDQYGYSLVQNISRYMTIAEGTVYPLLRRLVKSGELSTYY QPSTEGPSRKYYQLTQQGAARVDQLEEEWKLFTEAVEHFIEESENE >gi|224999839|gb|ACJC01000161.1| GENE 16 15118 - 15678 439 186 aa, chain + ## HITS:1 COG:CAC0572 KEGG:ns NR:ns ## COG: CAC0572 COG4709 # Protein_GI_number: 15893862 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 182 1 191 191 93 31.0 2e-19 MNKNDYLKELKKHLKHMNKEEKEDILNEYDTHFYSGQQEGKSESEVCKELGNPKVIGKEL TATFSVENAHQKVSLMNISSAIVAVMGLSLLNFFIVTIPAFLSILLVLTFIIFTLASLVA PLMLLIKGIMDGFHSIILYDIFMTGLMFGVGLVLAVVTYYLIKWLFYLTMKYLKWNISIV KGSVQS >gi|224999839|gb|ACJC01000161.1| GENE 17 15675 - 16478 805 267 aa, chain + ## HITS:1 COG:no KEGG:SE1920 NR:ns ## KEGG: SE1920 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 267 1 267 267 395 92.0 1e-108 MKKISAIILLIGLSLIIICSVGVYAQNKKLSKDKQYNDQTTNLMKNYDDNTVKSIYVDGK VSDITVKKGEHFSVKSKGNDKNLNVTSKVNNQHWVITERQTRPHINFRIQGHVSNHITIT VPKYIKNIDIKTNDGDLNVVGVNSDTGRFDTESGDIKVQNGRYKKVTLHNEDGDIHTKDI HFNHADIQNDNGDIQMKQLPPDIPLRIKNEEGDINLNYKKELHHTQIITRNEEGQTDIDH RVLNNSKVNNGNNKVKLINENGDITVK >gi|224999839|gb|ACJC01000161.1| GENE 18 16633 - 17250 692 205 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 4 205 1 202 202 335 79.0 2e-92 MIYLDFINQQTTQTAKALLGVKIIYQDDYQTYTGYIVETEAYLGIQDKAAHGFGGKITPK VTSLYKKGGTIYAHVMHTHLLINFVTRTEGIPEGVLIRAIEPDEGIGAMNVNRGKSGYEL TNGPGKWTKAFNIPRSIDGSTLNDCKLSIDTNHRKYPKTIVESGRIGIPNKGEWTNKPLR FTVKGNPYVSRMRKSDFQNPDDTWK >gi|224999839|gb|ACJC01000161.1| GENE 19 17449 - 18021 389 190 aa, chain + ## HITS:1 COG:SA2133 KEGG:ns NR:ns ## COG: SA2133 COG3152 # Protein_GI_number: 15927922 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 4 173 6 182 206 125 42.0 5e-29 MREKVRFTQAFKLFWTNYFNFKGRSRRSEYWFAMLWHLIFMIPAIIGYAFGFIFLISSET FKSEGFILLGVGILIFSLIYIFIYSLVTLIPNVAILSRRFHDRSMTMTLPIIFYVFTIIV SAFNYILNIDNSAVLIFMGIICLIYWIGSILILVLTCLDSKTESNKYGPSPKYNCNETNF HGDNANPVDK >gi|224999839|gb|ACJC01000161.1| GENE 20 18529 - 20139 1493 536 aa, chain - ## HITS:1 COG:SA0510 KEGG:ns NR:ns ## COG: SA0510 COG1069 # Protein_GI_number: 15926230 # Func_class: C Energy production and conversion # Function: Ribulose kinase # Organism: Staphylococcus aureus N315 # 1 526 1 528 545 593 53.0 1e-169 MSYSIGIDFGTASGRVILADTSNGHIISRYEEDYANGTYMNSLYDKPLPENYFLQNADDY LQILEQGVQFVLEDSKVNKNDVVGIGVDFTSSTIIFLDEQFEPLHRHEDLKTNPHAYVKL WKHHGAQDEANHMIQMSKNKNWLDYYGSSVNSEWMIPKIMEVKHEAPEILRRARYIMEAG DYITSILTNSNVRSNCGIGFKGFWDNDAGFNYEFFHSVDPDLPKIVKEKCEAPIISIGKS AGRLCKDYQQIWGLSQDVQVSPFIIDAHSGVLGVGAIEAGEFTAVIGTSTCHLMLDSKQV PISSITGSVKNAIIPGLYAYEAGQPAVGDLFEYSKNQAPKHIVDKANEHHMPVLNYLEEL ASHIKIEEQHVVVLDWLNGNRSILSNSHLTGSIFGLTLQTPYEMIHRAYIEATAFGTKLI IKQFEDNHIPVHTVYASGGIPQKSKLLVEIYANVLNKKVVVLDSSNASALGAAMLGATVG NAYSTLKEAALSMKQPIAYIQEPEFQKVQAYEPLYHKYCELHDLLGRQYPELSYLI >gi|224999839|gb|ACJC01000161.1| GENE 21 20730 - 21740 301 336 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 29 333 35 342 345 120 30 1e-26 MISKVEHQRHGLDLIKIDNDDTKIVFTNYGARIVSWKYHDNNIVLGNVVEADEFYFEEPF NFGATVGRYAGRIENASFKLDDDTFQLESNDGQHHLHGGSHGLNRRIFDYEIVDDIGQVK IIFTTTIKEEEDNYPGNMMVKVIHTYDANHRWSVQYEAKSTKKTVFNPSNHVYFNLNRDN NVVYNHCINSSELKMYMLNDKHIVKEEQSLDLHRLLDTNKVYLKDIFESDNETLQQQINH YNGIDHPFEFGGNELTIDNSEFELIIKTDMPHFVMFTFNDPQVWNNDFNIYKAHSGFSIE TQFMPNDINMYGAKAQSILEADTLFTSKTSFQIHEK >gi|224999839|gb|ACJC01000161.1| GENE 22 21818 - 22498 656 226 aa, chain - ## HITS:1 COG:SA2128 KEGG:ns NR:ns ## COG: SA2128 COG2258 # Protein_GI_number: 15927917 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 214 1 214 217 271 60.0 1e-72 MIKVNAISIGKIETLSYGNYKPMQSALNKIPFKGQMWLNRLGFVDDEQAYHKHGGIHKAI CCFSKSNYQLFKDDLHQLPEYAMFGENLTVEHLDEADVYFGNQYQLGDTIIEVSDIREPC WKIQAKYTIPNLVQKMSQSGKTGFYFRVIKEGYVHQSDNLKLIKKAESNTRLSVKNLNHL FYNERDNLRLIYYALRNPYLSPDRKEKLQKMKTRAENRKFINPDDE >gi|224999839|gb|ACJC01000161.1| GENE 23 22664 - 23356 739 230 aa, chain + ## HITS:1 COG:SA2127 KEGG:ns NR:ns ## COG: SA2127 COG0120 # Protein_GI_number: 15927916 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 336 75.0 2e-92 MKDAKELKLMTLEDVLGQIENGMTLGIGTGSTIELLIPQIAELIQKKNYTITGVCTSNKT AFLAKELAMNIVDVNDVEKIDLAIDGADEVDSALNLIKGGGGALFREKVIDEMADRFVVV VDESKLVNYLGETFALPVEVDKFNWYQVAKKIECTYDIHVNRRINEDVPFITDNGNYILD CSLQNRISAYELHEFLIHLTGVLETGYFLDIADQVIVGTQEGVKILNKET >gi|224999839|gb|ACJC01000161.1| GENE 24 24319 - 25467 924 382 aa, chain - ## HITS:1 COG:no KEGG:SERP1920 NR:ns ## KEGG: SERP1920 # Name: not_defined # Def: abortive infection family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 382 1 382 382 615 96.0 1e-175 MKNSRFSGFQWAMMVFVFFVITMALSVILRDFQATIGVKRFVFSIKDLAPFIAAIVCILI FKHRKEQLAGLKFSISLKVIERLLLALILPLIILMIGLFSFNTYADSFILLQTSDLSVSL LTILIGHILMAFVVEFGFRSYLQNILETRMNTFFASIVVGLIYSVFTANTTYGVEYAGYH FLYTFMFSMIIGELIRATNGRTIYIATAFHASMTFALVFLFSEETGDLFSMKVIALSTTI VGVSFIILSLIIRAIVYKTTKQSLDEVDPNNYLSHIQDEEPSQEDTSSTSDHDVSSKDET KQQEIDNDKYQSKKPNKSDDAIATSDYKEDASSVNKETDTNHNDKLRDHSTYTEDRHSSV VNDVKDEIHEVEDHKADTDKSQ >gi|224999839|gb|ACJC01000161.1| GENE 25 25715 - 26650 1116 311 aa, chain + ## HITS:1 COG:SA2125 KEGG:ns NR:ns ## COG: SA2125 COG0010 # Protein_GI_number: 15927914 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Staphylococcus aureus N315 # 1 310 1 310 311 510 78.0 1e-144 MYQLAQSNLWTGRLDSETDPTQFRHFQTVKFGDLSQLDFSEKHKGVGLLGYAIDKGVELN KGRVGAKEGPNAIKRAFAGLPDLNQCEEIIDYGNVEHNHELLIDTQREFADLAAKSMKRH KQTFLLGGGHDIAYAQYLATRKVFPESSIGVINIDAHFDTRDEDYSTSGTSFRQILEEDD NADYLVLGVSQGGNTQALFNYAKEKDIQFVYADELLHQVSPPIKDMIERFIHNHDTVMFT ICMDVVDSAFAPGVSAPAVLGIYPHTVFELAKRVIPSEKVKSISIAEMNPTYDSDQRTAK LVANLVHHCLI >gi|224999839|gb|ACJC01000161.1| GENE 26 27122 - 28240 1222 372 aa, chain + ## HITS:1 COG:SA2120 KEGG:ns NR:ns ## COG: SA2120 COG1473 # Protein_GI_number: 15927909 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 8 371 8 371 373 523 68.0 1e-148 MTNYSTYVNWRRTFHQYPELSDEEYETTETLRKILKSYGIRILDAPLKTGLVAEIGQGEE MIAVRTDIDALPIEEQVKHEFTSKHHGAMHACGHDIHMASILATGTQLKEIEDELNGRVR LIFQPAEELGHGAFEIINTGILKGAKAVLGFHNYPTLKVGEFAIKSGAITSAVDRFEFNV KGKGAHAAKPEQGNDPVIVVGQLINSLQTIVSRNLSAFDSAVVTIGEISCGNTWNVIADK AYIQGTVRSFDEDKRHYIENRMKNIADGLSRVFNVDIDLTYSRLPGAVVNDAHLTQEAIE VAKNVGYHVSMLDEPVTIGEDFSGYTEEYPGVFAFIGSDSKFDLHHPNYHPDERILEKVP QYFVQLVQRLLT >gi|224999839|gb|ACJC01000161.1| GENE 27 28326 - 29207 1212 293 aa, chain + ## HITS:1 COG:SA2119 KEGG:ns NR:ns ## COG: SA2119 COG1028 # Protein_GI_number: 15927908 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 293 1 293 293 478 82.0 1e-135 MSAQDPRNKFKTDNYEKQEQEVPGIQAKMSPQPDCGEDSYHGHHRLDGFKILVTGGDSAI GRAAAIAYAKEGADVAINYLPSEQQDADDVKQIIENVGQKAILIPGDIRDEQFNYDMVEE AYQQLGGLDNVTLVAGHQLYQDELSEFKTQDFTETFETNVYPVFWTVQKALEYLQPGGSI TTTSSVQGYNPSPILHDYAATKAAIISLTKSFSAELGPKGIRVNCVAPGPFWSPLQIVGG QPQSAIPTFGQNTPLGRAGQPVECAGTYVLLASDDASYITGQVYGVTGGTQID >gi|224999839|gb|ACJC01000161.1| GENE 28 29489 - 30100 488 203 aa, chain + ## HITS:1 COG:SA2452 KEGG:ns NR:ns ## COG: SA2452 COG1853 # Protein_GI_number: 15928245 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Staphylococcus aureus N315 # 1 201 1 201 203 248 61.0 4e-66 MKKIKAETLSDMQNYKLLSGSIIPRPIAFVTTQNLKGDVNAAPFSFFNVVNHTPPMIAIA VQRTNGNRKDTSINIEQSGEFAVHITDEAIVNDVNETAAPLEYGVNELKRTSLSMIDSDL INVPAIKEAKVRFECKLHQIVQLGNKDNGSDLIIGEIVMYHIDEEVYFEDSKIDANQLNP VARLAGNDYSLLGQTFTVNRPTS >gi|224999839|gb|ACJC01000161.1| GENE 29 30144 - 30743 336 199 aa, chain + ## HITS:1 COG:no KEGG:SERP1915 NR:ns ## KEGG: SERP1915 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 191 1 191 195 237 90.0 2e-61 MKAYLYKFMPLLILVIGLIILYVINDYPTLLHVIVIIVFITSGLKNVYFVNNNIRNHIIW MSPKLDRILGMLSGILYSGIYWVSFIKQQPLWIVILILVLTVGTAVLLETKLHITSLQLE ERLSSERIKRKVISRHKAQRLKNIFFTVIVVVIISMLISLYLKLMVIFGIALAIFILASI SVAIFEKYFTIYWKYVNYY Prediction of potential genes in microbial genomes Time: Sun May 29 08:09:33 2011 Seq name: gi|224999838|gb|ACJC01000162.1| Staphylococcus epidermidis W23144 contig00206, whole genome shotgun sequence Length of sequence - 3588 bp Number of predicted genes - 4, with homology - 4 Number of transcription units - 4, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 1/1.000 + CDS 56 - 1357 1437 ## COG1757 Na+/H+ antiporter + Term 1380 - 1423 9.4 + Prom 1572 - 1631 7.7 2 2 Tu 1 . + CDS 1655 - 2167 591 ## COG3832 Uncharacterized conserved protein + Term 2170 - 2226 17.1 - Term 2157 - 2212 16.1 3 3 Tu 1 . - CDS 2312 - 3073 588 ## COG1737 Transcriptional regulators - Prom 3117 - 3176 13.6 4 4 Tu 1 . + CDS 3271 - 3586 415 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific Predicted protein(s) >gi|224999838|gb|ACJC01000162.1| GENE 1 56 - 1357 1437 433 aa, chain + ## HITS:1 COG:SA2117 KEGG:ns NR:ns ## COG: SA2117 COG1757 # Protein_GI_number: 15927906 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Staphylococcus aureus N315 # 1 433 23 455 459 642 86.0 0 MKEMKNGNAWALIPLLLFVLLFLGVGIISGDFTTMPLNVAITITVIVALLMNRKETFAKK VEVFTKGAGHSNIILMMLIFILAGAFSTTAEKMGGVSSTVNLGLSLIPQNLIIVGLFIIC MFVSISMGTSVGTVAAIAPVGFGFAQATDVPAALAMATVVGGAMFGDNLSMISDTTIAAV RTQKTKMSDKFKVNFKIVLPGAIITIIILFFLTNGISIDHTKNYDYNLIKVIPYLLVLIL ALVGINVIIVLIGGTVLAGIIGLIDGSFGWNGLLNAISKGIIGMEDIAMIALLIGGLVGI IQHNGGIDWLLNFVRSKVKSKRGAELGIASLVSAADISTANNTISIIMAGPLAKNIADEY DVDPRKSASILDIFGGCFQGLLPYSPQVISAAGVAGISPFLMLQYSIYPILLGVCGLVAI ILRVPRLNQSSKK >gi|224999838|gb|ACJC01000162.1| GENE 2 1655 - 2167 591 170 aa, chain + ## HITS:1 COG:SA2116 KEGG:ns NR:ns ## COG: SA2116 COG3832 # Protein_GI_number: 15927905 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 167 1 168 168 213 70.0 2e-55 MAKYNVENEYVEIDIERLLKYTPEVVYEAWTKTDILKKWFMTTQRTNKSFDADIQEGGKY RIIDSRNGKQNIIEGTYEELVLDEYIKMTIGMPGLSEEEDVIEVEFFERENGETQMFFYY RSFIEKERRLTTLEYKQKKKEYHDSTAHGFELMIDQMQNVIDEIEEQRHN >gi|224999838|gb|ACJC01000162.1| GENE 3 2312 - 3073 588 253 aa, chain - ## HITS:1 COG:SA2115 KEGG:ns NR:ns ## COG: SA2115 COG1737 # Protein_GI_number: 15927904 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 253 1 253 254 357 78.0 2e-98 MILDERVNSNFDQLNDNDIQIAHYVNTHIDVCKNMKIQDLASQTHASNATIHRFTRKLGF DGYSDFKSFLKFEDSKNHQLPSDSMEQFKQEIENTFNYLERIDYRLLTHKMHHATTIYLY GTGRAQMNVAEEAQRILLTMHKNIILLHDVHELKMVLNKTIPEDLFFIISLSGETHQLKE VTQLLQLRQKYFISVTTMKDNTLAQQADYNVYVSSNTFYLNDGTDYSSFISYHIFFETLL RKYNEYKENHELT >gi|224999838|gb|ACJC01000162.1| GENE 4 3271 - 3586 415 105 aa, chain + ## HITS:1 COG:SA2114_1 KEGG:ns NR:ns ## COG: SA2114_1 COG1263 # Protein_GI_number: 15927903 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 1 105 1 105 454 190 97.0 4e-49 MNAIKRFGSAMIVPVLMFAFFGIVLGFATLFKNPTIMGGLAEQHTFWFKFWSVIESGGWV IFTHMEIVFVVGLPLSLAKKAPGHAALAALMGYLMFNTFINAILT Prediction of potential genes in microbial genomes Time: Sun May 29 08:09:42 2011 Seq name: gi|224999837|gb|ACJC01000163.1| Staphylococcus epidermidis W23144 contig00207, whole genome shotgun sequence Length of sequence - 27855 bp Number of predicted genes - 29, with homology - 28 Number of transcription units - 19, operones - 7 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 1272 1380 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 1284 - 1333 9.2 - Term 1272 - 1319 9.5 2 2 Tu 1 . - CDS 1377 - 1907 332 ## SERP1908 hypothetical protein - Prom 2144 - 2203 8.7 + Prom 1961 - 2020 9.7 3 3 Op 1 . + CDS 2209 - 2844 637 ## COG0637 Predicted phosphatase/phosphohexomutase 4 3 Op 2 . + CDS 2862 - 3050 210 ## SERP1906 hypothetical protein + Term 3291 - 3352 4.5 - Term 3288 - 3330 2.0 5 4 Op 1 . - CDS 3367 - 3552 151 ## 6 4 Op 2 . - CDS 3549 - 3905 406 ## SERP1904 hypothetical protein + Prom 4200 - 4259 5.9 7 5 Tu 1 . + CDS 4303 - 5679 1384 ## COG1113 Gamma-aminobutyrate permease and related permeases + Term 5743 - 5802 14.5 - Term 5731 - 5790 12.0 8 6 Op 1 3/0.000 - CDS 5802 - 6569 651 ## COG1737 Transcriptional regulators - Prom 6615 - 6674 2.5 9 6 Op 2 9/0.000 - CDS 6688 - 8112 1925 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific 10 6 Op 3 2/0.000 - CDS 8125 - 9012 915 ## COG2103 Predicted sugar phosphate isomerase 11 6 Op 4 . - CDS 9009 - 10061 895 ## COG3589 Uncharacterized conserved protein - Prom 10152 - 10211 14.3 12 7 Tu 1 . - CDS 10241 - 10588 188 ## SE1887 hypothetical protein - Prom 10825 - 10884 10.4 + Prom 10541 - 10600 6.2 13 8 Tu 1 . + CDS 10625 - 11374 518 ## COG1266 Predicted metal-dependent membrane protease + Term 11518 - 11557 2.0 14 9 Tu 1 . - CDS 11556 - 12245 596 ## COG2378 Predicted transcriptional regulator - Prom 12276 - 12335 10.9 + Prom 12590 - 12649 3.8 15 10 Tu 1 1/1.000 + CDS 12672 - 13487 682 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Prom 13571 - 13630 8.0 16 11 Tu 1 1/1.000 + CDS 13676 - 14626 1057 ## COG1316 Transcriptional regulator + Term 14676 - 14708 3.3 + Prom 14906 - 14965 9.5 17 12 Op 1 6/0.000 + CDS 15105 - 18056 2632 ## COG3383 Uncharacterized anaerobic dehydrogenase 18 12 Op 2 . + CDS 18059 - 18529 540 ## COG2427 Uncharacterized conserved protein + Prom 18564 - 18623 6.0 19 13 Op 1 . + CDS 18655 - 18930 181 ## SERP1892 hypothetical protein 20 13 Op 2 . + CDS 18952 - 19728 572 ## COG4193 Beta- N-acetylglucosaminidase + Term 19851 - 19888 1.4 21 14 Tu 1 . - CDS 19832 - 19996 61 ## gi|242243894|ref|ZP_04798337.1| hypothetical protein HMPREF0791_2418 - Prom 20201 - 20260 5.8 + Prom 19910 - 19969 8.2 22 15 Tu 1 . + CDS 20108 - 21232 1015 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases + Term 21301 - 21354 10.5 - Term 21289 - 21342 10.5 23 16 Op 1 . - CDS 21373 - 22326 1250 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Term 22366 - 22401 0.1 24 16 Op 2 12/0.000 - CDS 22404 - 22721 455 ## COG2076 Membrane transporters of cations and cationic drugs 25 16 Op 3 . - CDS 22727 - 23053 358 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 23134 - 23193 5.8 - Term 23137 - 23180 10.5 26 17 Tu 1 1/1.000 - CDS 23206 - 23679 544 ## COG3942 Surface antigen - Prom 23844 - 23903 10.6 - Term 23851 - 23896 4.2 27 18 Tu 1 . - CDS 24003 - 24515 398 ## COG3296 Uncharacterized protein conserved in bacteria - Prom 24538 - 24597 10.4 + Prom 24795 - 24854 5.1 28 19 Op 1 . + CDS 24878 - 25948 1116 ## SERP1882 NAD/NADP octopine/nopaline dehydrogenase family protein 29 19 Op 2 . + CDS 26013 - 27410 1127 ## COG1757 Na+/H+ antiporter + Term 27654 - 27703 11.3 Predicted protein(s) >gi|224999837|gb|ACJC01000163.1| GENE 1 1 - 1272 1380 423 aa, chain + ## HITS:1 COG:SA2114_1 KEGG:ns NR:ns ## COG: SA2114_1 COG1263 # Protein_GI_number: 15927903 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 1 346 107 454 454 597 86.0 1e-170 WPHTFGANLKKGVENTTGLKSIAGIETLDTNILGAIIISGIITWIHNRYYSKRLPEMLGV FQGLTFVVTISFFVMLPVAAITCVVWPTIQHGIASIQYFIVASGYIGVWLYHFLERVLIP TGLHHFIYAPIEVGPVVVNHGLKAEWLQHLNQFAESNKPLKEQFPYGFMLQGNGKVFGCL GIALAMYATTPKENRKKVAALLIPATLTAVVAGITEPLEFTFLFIAPFLFVLHALLAATM DTLMYGFGVVGNMGGGVLDFIATNWIPLGKAHWMTYVFQVVIGLIFVAIYYFLFKYLILK FDIPLPGRKKGEEEVKLFSKQDYNDKKGDSTRNHSPNSEYEEKAMYYLEGLGGKENIKDV TNCTTRLRLTVKDESKVQESAYFTHNQMSHGLVKSGKSVQIVVGMSVPQVREAFENIVND DLS >gi|224999837|gb|ACJC01000163.1| GENE 2 1377 - 1907 332 176 aa, chain - ## HITS:1 COG:no KEGG:SERP1908 NR:ns ## KEGG: SERP1908 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 176 1 176 176 320 97.0 1e-86 MLIDKFETYIINVAGLKSRSTRKKLIHLCKEITFCESFQYSIIKQNDVFALEVSLPKQQL PYLISFLSFHNYAIYQILLPSRVNELLDSEQLYQSIKRFDLAIDGLQDAFIKDKVIDIMN MFVNHHNVNYTLNNNCASVTCPPDIFTKLLQTIATRNIDILSASYRAKMLHKARIS >gi|224999837|gb|ACJC01000163.1| GENE 3 2209 - 2844 637 211 aa, chain + ## HITS:1 COG:SA2111 KEGG:ns NR:ns ## COG: SA2111 COG0637 # Protein_GI_number: 15927900 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Staphylococcus aureus N315 # 1 204 1 204 211 251 61.0 5e-67 MYKAVVFDFDGTVIDTEKHLFDLINTHLKIHQEAPISLEFYKQFIGGETTGLHTYLEDAI GFKNKEKIYDQYYQTIIQLPVNPTIIQLMQYLKKRHIPMAIATSSYKKNIYPIFKQLGLD TYIDVVVDRENVESVQPNPEIYLKAVQELNYNPTTCLAIEDSVNGATAAMLAGLDVVVNT NIITKDQDFSTVQYVGQDMEFEDIENFLFKE >gi|224999837|gb|ACJC01000163.1| GENE 4 2862 - 3050 210 62 aa, chain + ## HITS:1 COG:no KEGG:SERP1906 NR:ns ## KEGG: SERP1906 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 62 1 62 62 85 96.0 5e-16 MGYIILFFIAGPVIIGVGNLILGPIFNKRTPLHVQFRSFIIGSLVYLILATVCYFLLLQG KL >gi|224999837|gb|ACJC01000163.1| GENE 5 3367 - 3552 151 61 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTIIIGLIVIILLIISLLPNYKAMVLAKQQGQKPTRYTIMVGIDLLLIILILVTLVLKLI M >gi|224999837|gb|ACJC01000163.1| GENE 6 3549 - 3905 406 118 aa, chain - ## HITS:1 COG:no KEGG:SERP1904 NR:ns ## KEGG: SERP1904 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 118 1 118 118 135 94.0 4e-31 MNKALVIRAIKFSLIFMTAFLILNLLTMKEASISSIIVRTVIAAIVFFVIYIIVFTILSS SERKIIYGTTLPIALFICLIFGSIFFTPRIGIIVGLILGVIAGVIWEFLNRKNGGHTS >gi|224999837|gb|ACJC01000163.1| GENE 7 4303 - 5679 1384 458 aa, chain + ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 453 1 453 459 693 86.0 0 MENNELQRGLNARQMQMIALGGTIGVGLFMGATSTIKWTGPSVILAYLIAGIFLFLIMRA MGEMIYINPTTGSFATFASDYIHPAAGYMTAWSNVFQWVVVGMSEVIAVGEYMNYWFPSL PNWIPGVIAVLFLMAANLVSVKAFGEFEFWFALIKVVTIVLMIIAGLGLILFGIGNGGNP IGISNLWSHGGFMPNGFIGFFFALSIVIGSYQGVELIGISAGETKNPQKNIVKAVNGVIW RILIFYIGAIFVIVSVYPWNQLGNIGSPFVATFAKVGITFAAGLINFVVLTAALSGCNSG IFSASRMIYTLAKKGQMPKVFTKVMKNGVPFYTVFAVSMGILIGALLNVILPLIIDGADS IFVYVYSASILPGMIPWFMILFSHLRFRRLHPEKVHNHPFKMPGGAIANYLTIMFLLLVL VGMLLNKETVVSVVIGIVFLTAVTLYYFIRYHKKERQI >gi|224999837|gb|ACJC01000163.1| GENE 8 5802 - 6569 651 255 aa, chain - ## HITS:1 COG:SA2108 KEGG:ns NR:ns ## COG: SA2108 COG1737 # Protein_GI_number: 15927895 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 255 36 290 290 342 72.0 5e-94 MTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSKFLPKEVTQYNVELVDNESTISL KNKLHSRSKAALSNANETINAAIIDEICDLIKKSETIFIYGYGASFVVATDLYQKLSRIG LNIQLVHETHIFTTMLATRNSNDCVIFISNNGTQSEMQSIAKVIADYHIPIATISSTSDN PVAKQSNIVLTYGQTDENEMRMGATTSLFAQMFTIDILYYRYIALNYQSSLDFITQSKIA LDNYRKHLSNIDFKH >gi|224999837|gb|ACJC01000163.1| GENE 9 6688 - 8112 1925 474 aa, chain - ## HITS:1 COG:SA0186_2 KEGG:ns NR:ns ## COG: SA0186_2 COG1263 # Protein_GI_number: 15925896 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 124 474 1 351 355 491 82.0 1e-138 MSKEERLAKDITHALGGSQNISNIIHCMTRVRIKVHNDAKVNYDELKSINGVLGVVEDER IQVVVGPGIVNKVAKHMADQSGATLAEETTKNQSYKSQAEKRAYEHKQQFQSQRKQSKWN KVLKSIANIFIPLIPAFIGAGLIGGIAAILSNLLTAGSISGQWIQQIVTVLNVIKDGMLF YLAIFTGINSAKVFGATPGLGGVIGGTTLLTGITDENPIKNIFTGEHLAAGQGGIIGVIF AVWLLSMVEKRLHKIIPNSIDIIVTPTITLLLIGLLTIFIIMPLAGFVSDGLVYVINWII GVGGIFSGFIIGAFFLPLVMLGLHHIFTPIHIELINQTGSTYLLPIAAMAGAGQVGAAIA LWVRCGKNKELRNTLKGALPVGFLGIGEPLIYGVTLPLGRPFFTACIGGGVGGAVIGGIG HIGATAVGPSGISLLPLIANNMYLGYIVGLLAAYAGGFIFTYFFGTTKEMRNPE >gi|224999837|gb|ACJC01000163.1| GENE 10 8125 - 9012 915 295 aa, chain - ## HITS:1 COG:SA0185 KEGG:ns NR:ns ## COG: SA0185 COG2103 # Protein_GI_number: 15925895 # Func_class: R General function prediction only # Function: Predicted sugar phosphate isomerase # Organism: Staphylococcus aureus N315 # 1 293 2 294 299 357 61.0 1e-98 MNHLTTETRNIQTMHLDEMNLKDALKTMNQEDQFVPKAIEPVIPNLTKVIESAIQRFNNG GRIIYIGAGTSGRLGVLDAAECVPTFNVSPNDIIGIIAGGQKAMTVAIEGAEDDAEQGAQ DLKNIHLQSKDIVVGISASGRTPYVKGALDYANKLNAETVALSCNVHSDISKNSNHVLEI NVGPEVLTGSTRLKSGTAQKLVLNMISTMTMIGVGKVYDNLMVDLRPTNQKLIHRSIRII QDVCDLNHQEAIELYEKSDHNIKIAIVMHLCSTTQQDARLRLKQNNGVIKQAINT >gi|224999837|gb|ACJC01000163.1| GENE 11 9009 - 10061 895 350 aa, chain - ## HITS:1 COG:SA0184 KEGG:ns NR:ns ## COG: SA0184 COG3589 # Protein_GI_number: 15925894 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 350 1 351 351 294 42.0 2e-79 MLGFSVYLGQNLDRDYILNMADLGYDVVFTSLQIPEEDKKNQMAYLGDLCQLLSAYQITY IIDVTPSLLNQTIYSYLNQLPHGDFYIRIDNQLNIDLIKDIISQGFKCCLNASTLTDSML AHIYRTEFNNQLLYCHNYYPRPDTGLSISFIEEKNQLIRKYDAHAKICAFIPGTQKRGPL FKGLPTVEKHRFEHPLIAAQDLQLTGISNIIISDTLLSHIYAEQLSNMWLYRHFILHLDQ LDSSFTSQVLKIHTSRLDSPEHLIRSQYSRTDNQQTVPMIGSAHRDQGDITIDNHLNGRY EGEIQVIKAPMPGHSHINCIGHVCDKDVPLLSLIQPGDTFKFVYTKENNK >gi|224999837|gb|ACJC01000163.1| GENE 12 10241 - 10588 188 115 aa, chain - ## HITS:1 COG:no KEGG:SE1887 NR:ns ## KEGG: SE1887 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 115 1 115 115 189 99.0 4e-47 MGGFMNYLEISLHIEQQLVKLLSLSESAKYYALIHHNKFESFIDDFNLTVNQEMKWAMSH QLLLNSNDTLVSYCQLIRRLNDSPLLTLNQGHIIYYINTQQTLIHRQLLKHKQAL >gi|224999837|gb|ACJC01000163.1| GENE 13 10625 - 11374 518 249 aa, chain + ## HITS:1 COG:SA2106 KEGG:ns NR:ns ## COG: SA2106 COG1266 # Protein_GI_number: 15927893 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 5 248 2 245 245 203 49.0 2e-52 MMKKDKKRQSYRFKDIVWRDFSLIAIGFLCIFIFSFIGLTIAAIAFQNINELQLTMIGTL GQFMSYILVILAFYFLHINSFVDRVKSGFDYLKKHWLFIIIVMCASFIISNVYDKLIELL PKYLQYSETQNELELNELFKSGIFIPFAFVLIVIVGPIVEELVFRHLLIGELGKKFNFIV MGVISALSFTYIHVSDAKSPFEFGAYLILAIALVYVYLKSNRNLASSISLHMLNNFISFI WTIIVVFSK >gi|224999837|gb|ACJC01000163.1| GENE 14 11556 - 12245 596 229 aa, chain - ## HITS:1 COG:SA2105 KEGG:ns NR:ns ## COG: SA2105 COG2378 # Protein_GI_number: 15927892 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 227 1 227 230 301 70.0 5e-82 MNKLERQNRIIQTIQSSDNITASQLAKQFKVSKRTILRDIDELEDQGVKVYARHGKLGGY QIKDAHAKITLSLTEQQLSALFLTLNESQSYSTLPYQNEIRAIIKQCLNLPQTRLRKLLK KMDYYIKFEDSNHVTLPHLFSDILIYCTERNVMLVDLNEDGQTQAENVIFIGLICKNAVW HAVVFEIGRGYTRELSIMNIQDISYSFEKTIQTQDISIENYRQFLAPSE >gi|224999837|gb|ACJC01000163.1| GENE 15 12672 - 13487 682 271 aa, chain + ## HITS:1 COG:SA2104 KEGG:ns NR:ns ## COG: SA2104 COG0483 # Protein_GI_number: 15927891 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Staphylococcus aureus N315 # 1 263 1 263 265 327 59.0 1e-89 MTELYLKKLDEYICQWIRGLDNIIPRLVEKMETSTKKDRFDLVTNVDKQIQNHFQNFLQE HYPTHQLLAEEKDNSDITPYEGHLWIMDPIDGTSNLVKQQEDYCIILGYFIDGEPKLSYI YDYPHQRLYRAIAGVGAYENNQLMTLPKRIGLRDAIISFKPQVLKEETIQSLFQSAFDFR IIGSCGLDSIRVIKGQFGAHINTNPKPWDISAQFLFARELGLIMTQINGEPLDFSTAGPF IISNPGCYDDMIRILNEGEAYSKSNHHIEHG >gi|224999837|gb|ACJC01000163.1| GENE 16 13676 - 14626 1057 316 aa, chain + ## HITS:1 COG:SA2103 KEGG:ns NR:ns ## COG: SA2103 COG1316 # Protein_GI_number: 15927890 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 314 1 314 315 464 76.0 1e-131 MQRSDKRKMSLPMKILLWVVGILFLLAIIAVIYVSAKIFITGDKIHNPLNRNHSELRSGK VNLKNGDPFTIALFGVDSDEKRKQQGGGERSDTIMVLSINPKEKKTELVSIPRDTKAEIA GRGTEEKINHAYAYGGPNMAVKTIEKLMNVPIDHYATIDMDGLHDMIDTLGGVDVVSNST FTMGANHFVKGEKTHVDGDAAMDFIRSRKEDGAGGDFGRQERQQLILEAMADKMTSASSI THFNTLMNQIQKNVKTDLKLGDLNTIRTKYKDANDQVNRHQLEGEGGIQNDGLYYFIPSD ASKNENTQLLRDNLNL >gi|224999837|gb|ACJC01000163.1| GENE 17 15105 - 18056 2632 983 aa, chain + ## HITS:1 COG:SA2102 KEGG:ns NR:ns ## COG: SA2102 COG3383 # Protein_GI_number: 15927889 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Staphylococcus aureus N315 # 1 983 1 983 984 1792 84.0 0 MSKEIKINLDGKDYLVEAGTNLLEFIRSRNTFVPAICYNESMGPIQTCDTCMVEINGDIA RACGTSIESSMTVNTYNHHVKTSQKEALDRILEKHMLYCTVCDYNNGDCEIHNTMDKWGI QHQTYKYKRKPYEKDYGPFYRYDPNQCILCGRCVEACQDVEVNETIRIDWERDHPRVIWD NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNVGYLTDTEPGSLASMIDIIKKSEPGYG TLLAVSDSEAEMRKERVNKTKTVCTYCGVGCSFEVWTKDREILKVQPSHDSPANKIATCV KGKFSWGHINSDQRLTKPLVRKEGMFHEVEWEEALQVIANNFERIKEQYGADSLSFISSS KATNEESYLMQKLSRQVIGTNNVDNCSRYCQAPATKGLVRTVGIGGDAGGIVDLEKASMT VLIGTNTAEAHPVIASRMKRAQKLFGQKSYVFDIRKHEMAERADAFYQPKPGTDLAWLSA VTKYIIDNNLHDKSFIEKWVDHFDTYYQSLEPFSMVFAEEVTGIPQERLIQFAHEVAKAD SVAICWAMGITQQDIGSDSSTAISNLLLITGNYRKPGAGAYPLRGHNNVQGCSDMGSMPD QFPGYQLISDDKIRAKFEKEYGVKLNDKPGRDNHQMIEGIHNGDIHSLYLYGEDTGIVDS NINFVQAAFEKLDFMVVQDEFLTFTATFADVVLPASPSLEKDGTFTNTERRIQRLYKALD SLGDSKPDWEIFQLIANRLGANWEYQHPSEIMDEIARVTPSYAGVSYDRLEGFNSLQWPV NKDGKDTPILYIDGFNFENKKAKLYPLTFDNYFKEDEVYDLHVNNGRLLEHFHEGNMTYQ TEMIKYKVPRAFVEISPELAQSRDIHEGAEIKLISETGEASLLAHITDRVKGKEIYIPLN NDALENGDLGAINALTNSDVDPYTDTPSYKRTHARMEVVTKRGKSPLNPTNFRVNKQRQP QYSVQVQKKWERSDYVFPGKMSD >gi|224999837|gb|ACJC01000163.1| GENE 18 18059 - 18529 540 156 aa, chain + ## HITS:1 COG:SA2101 KEGG:ns NR:ns ## COG: SA2101 COG2427 # Protein_GI_number: 15927888 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 153 1 154 157 179 68.0 2e-45 MAERITEIKRLKKSYEQIKQESLNDVIDAIVENKDSILKAIRLIGILDEAKILDALNGGL KARQVIINKFAVELNKDIYSGVLTNMAQLVFLLGELDVKDLSELLSRLNRGIHAANLKKP GDKTTIKSLVGFLRDDDLNRSMTYMLNLLRGMSSNN >gi|224999837|gb|ACJC01000163.1| GENE 19 18655 - 18930 181 91 aa, chain + ## HITS:1 COG:no KEGG:SERP1892 NR:ns ## KEGG: SERP1892 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 91 1 91 91 91 97.0 9e-18 MLLKIIEGVTHINPKVLKALAITSNVLLVIGIICLIMLKLMLAIAFFVVSLTISLVIFNV MFRHRTGMKIAINVSFFIVMIAIVVAYFVLS >gi|224999837|gb|ACJC01000163.1| GENE 20 18952 - 19728 572 258 aa, chain + ## HITS:1 COG:SA2100 KEGG:ns NR:ns ## COG: SA2100 COG4193 # Protein_GI_number: 15927887 # Func_class: G Carbohydrate transport and metabolism # Function: Beta- N-acetylglucosaminidase # Organism: Staphylococcus aureus N315 # 1 258 1 258 258 335 63.0 6e-92 MLKNTRLRMTTLFIISILAILAILFLIFDTNLFKNDVKHTFKEAVSLQTSEGNIHTKEVN GKFIYASKQDIEKAMQIKHSDNNLKYMDISEKVPMSEKEVNHILKGKGILENKGSTFIKA QDKYEVNIIYLISHALVETGNGQSDLSNGIKEGDHHYYNFFGIGAFDEDAIKTGKSFAKQ KKWTTPEKAIMGGAWFVRFHYFKNNQLNLYQMRWNPQNPGQHQYASDIQWANNIADLMEK YYDKYGIKKDHIRKKYYK >gi|224999837|gb|ACJC01000163.1| GENE 21 19832 - 19996 61 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|242243894|ref|ZP_04798337.1| ## NR: gi|242243894|ref|ZP_04798337.1| hypothetical protein HMPREF0791_2418 [Staphylococcus epidermidis W23144] # 1 54 1 54 54 73 100.0 4e-12 MNISIRSIVNAQFKFSLYCKKIFKYSTWVYASEYSFKAKKPETSFIVPSFLSYS >gi|224999837|gb|ACJC01000163.1| GENE 22 20108 - 21232 1015 374 aa, chain + ## HITS:1 COG:SA2099 KEGG:ns NR:ns ## COG: SA2099 COG0654 # Protein_GI_number: 15927886 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 13 374 13 374 374 523 69.0 1e-148 MKIAIVGAGIGGLTAAALLEEQGHQVKVFEKNNSINELSAGIGIGDNVLKKLGHHDLAKG IKNAGQNLTAMNIYDEQGTPLMCAKLKTHSLNVALSRQTLIEIIQSYVKESSIHTGFKVT KIEQTSCKVTLHFIKQESESFDLCIGADGIHSVVRESVGARTKIRYNGYTCFRGMVEDVQ FNDQHVANEYWGVKGRVGIVPLINQRAYWFITVHAKEGDPKYQSFGKPHLQAYFNHFPDE VRKVLEKQSETGILLHDIYDLKPLKTFVYGRTILMGDAAHATTPNMGQGASQAMEDAIVL VNCLEKYDFNKAIERYDKLRVKHTAKVIRRSKKIGKMAQKHHKLTVKLRNTAMKLIPNAL ASAQTKFLYKSKEK >gi|224999837|gb|ACJC01000163.1| GENE 23 21373 - 22326 1250 317 aa, chain - ## HITS:1 COG:SA2098 KEGG:ns NR:ns ## COG: SA2098 COG1052 # Protein_GI_number: 15927885 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 317 1 317 317 490 81.0 1e-138 MTKVYIAGAIPEVGLNLLKEHFEVDMYDGEGLIDKETLKKGVEHADALVSLLSTSVDKDI IDSANNLKIIANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVE GDHLSRTTGFDGWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKE EKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLINAGRGPIV NEQALVEALDNKAIEGAALDVYEFEPEITDALKSFKNIVLTPHIGNATFEARDMMAKIVA NDTIKKLNGDEPQFIVN >gi|224999837|gb|ACJC01000163.1| GENE 24 22404 - 22721 455 105 aa, chain - ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 104 2 105 105 86 48.0 9e-18 MAWLFLMIAGSFEILGVVLLNELSRTKNKIYVIFLGLAFILSFSTLKFAMVSIPMGTAYA IWTGIGTAGGTLIGMIFYGESTRISRILCILLIIISVVGLRLISY >gi|224999837|gb|ACJC01000163.1| GENE 25 22727 - 23053 358 108 aa, chain - ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 2 101 4 103 114 77 46.0 6e-15 MQWLKVILAGFIEIIWVTGLDQAHSLFTWIFTLFFIALSFFLVIDASKHLPVGTVYAFFV GIGAVGTVLVDMIFFNQPFTFTKIFLIMTLILGIIGLKLTTDATKEGR >gi|224999837|gb|ACJC01000163.1| GENE 26 23206 - 23679 544 157 aa, chain - ## HITS:1 COG:SA2097 KEGG:ns NR:ns ## COG: SA2097 COG3942 # Protein_GI_number: 15927884 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 1 156 1 166 166 147 64.0 1e-35 MKKIKTISTLVAGLGIAFLGHTTHADAAENNNQQQSTYNYSTTDVSFSKSGNLYTSGQCT WYVYDKTGGKIGSTWGNANSWASAAQAAGFTVNNTPEEGAIMQSSEGAFGHVAFVESVNN DGSITVSEMNYDGGPFSISTRTISASEASSYNYIHLN >gi|224999837|gb|ACJC01000163.1| GENE 27 24003 - 24515 398 170 aa, chain - ## HITS:1 COG:SA2096 KEGG:ns NR:ns ## COG: SA2096 COG3296 # Protein_GI_number: 15927883 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 44 169 14 140 140 105 55.0 4e-23 MEAKPIMDKETNYNELESKNVSNQASTDNLSNDNTIHHQSTIQNEESQDNRLMAMLIYLL SLFTGIIGPLIIWLLKRKESRLVDVSGKTYLNYFISYTIYSTVGVICMFMIVPLMNISES LAILLLILLLVVVFILLALLIMSFVCTIIACVKYMSGKTYTIPLTIPFIK >gi|224999837|gb|ACJC01000163.1| GENE 28 24878 - 25948 1116 356 aa, chain + ## HITS:1 COG:no KEGG:SERP1882 NR:ns ## KEGG: SERP1882 # Name: not_defined # Def: NAD/NADP octopine/nopaline dehydrogenase family protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 356 1 356 356 691 99.0 0 MKIAIVGSGNGAVTAAVDMVDKGHDVRLYCRNESISKFDAALEKGGFDFNNEGEEKFIEF TDISDDMEYVLDGADIVQVIIPSSFIEYYAKVMSKFVTNDHLIFFNIAASMGSIRFMNVL EDRHIDVHPHFAEANTLTYGTRVDFNNAKVDLSLNVRRVFFSTFDRSELNESYEKVSKIY DYLVKEESLLKTNLENGNPEVHPGPTLLNVGRIDYSDEFSLYKEGITKHTVRLLHAIEIE RLNLGRKLGFELSTAKESRIQRGYLERKDEDEPLNRLFNTSPVFSQIPGPNHVENRYLTE DIAYGLVLWSSLGRVIDVPTPNIDAVIMIASTILERDFFEEGLTIEKLGLDKLGLE >gi|224999837|gb|ACJC01000163.1| GENE 29 26013 - 27410 1127 465 aa, chain + ## HITS:1 COG:SA2094 KEGG:ns NR:ns ## COG: SA2094 COG1757 # Protein_GI_number: 15927881 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Staphylococcus aureus N315 # 6 463 4 461 466 630 78.0 1e-180 MTQKYRYPTFLESISTILVMVVVVVIGFVFFDVPIQVLLLISSAYAALIAHRVGLKWKDL EEGITHRLSTAMPALFIILAVGIIVGSWMYSGTVPALIYYGLKFLNPSYLLVSAFIISAM TSIATGTAWGSASTAGIALISIANQLGVPAGMAAGAIIAGAVFGDKMSPLSDTTNLAALV TKVNIFAHIKSMMWTTIPASIIGLAIWFIVGLQFKGDANTQQIQKLLKELSTIYNLNFWV WIPLIIIILCLIFRISTVPSMLISSISALVIGTFNHQFNMKDGFKASFDGFNHTMLHQSH ISDNAKTLIEQGGMMSMTQIIVTIFCGYAFAGIVEKAGCLDVILETIAKGVKSVGTLILI TVVCSIMLVFAAGVASIVIIMVGVLMKDMFEKMNVSKAVLSRTLEDSSTMVLPLIPWGTS GIYYAQQLNVSVDQFFIWAIPCYLCAFIAIIYGFTGIGIKKISRK Prediction of potential genes in microbial genomes Time: Sun May 29 08:12:35 2011 Seq name: gi|224999836|gb|ACJC01000164.1| Staphylococcus epidermidis W23144 contig00208, whole genome shotgun sequence Length of sequence - 95467 bp Number of predicted genes - 113, with homology - 112 Number of transcription units - 47, operones - 21 average op.length - 4.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 407 - 466 10.6 1 1 Op 1 3/0.125 + CDS 557 - 2530 1080 ## COG2207 AraC-type DNA-binding domain-containing proteins 2 1 Op 2 . + CDS 2569 - 3297 491 ## COG1846 Transcriptional regulators 3 1 Op 3 . + CDS 3333 - 3656 448 ## SERP1877 hypothetical protein + Term 3821 - 3882 -0.8 + Prom 3915 - 3974 10.1 4 2 Tu 1 . + CDS 4061 - 4405 379 ## COG1846 Transcriptional regulators - Term 4447 - 4493 12.1 5 3 Op 1 9/0.000 - CDS 4510 - 5346 566 ## COG0829 Urease accessory protein UreH 6 3 Op 2 17/0.000 - CDS 5346 - 5960 832 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 7 3 Op 3 16/0.000 - CDS 5973 - 6662 647 ## COG0830 Urease accessory protein UreF 8 3 Op 4 10/0.000 - CDS 6655 - 7107 630 ## COG2371 Urease accessory protein UreE 9 3 Op 5 17/0.000 - CDS 7121 - 8836 2400 ## COG0804 Urea amidohydrolase (urease) alpha subunit 10 3 Op 6 13/0.000 - CDS 8839 - 9240 548 ## COG0832 Urea amidohydrolase (urease) beta subunit 11 3 Op 7 . - CDS 9254 - 9523 332 ## COG0831 Urea amidohydrolase (urease) gamma subunit - Prom 9610 - 9669 9.9 + Prom 9580 - 9639 10.5 12 4 Tu 1 . + CDS 9824 - 10726 897 ## COG4413 Urea transporter + Term 10921 - 10963 4.3 + Prom 10933 - 10992 10.1 13 5 Tu 1 . + CDS 11160 - 12302 1251 ## COG1960 Acyl-CoA dehydrogenases + Term 12434 - 12473 8.0 + Prom 12518 - 12577 5.8 14 6 Tu 1 . + CDS 12611 - 13552 1000 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Prom 13582 - 13641 7.3 15 7 Op 1 1/0.688 + CDS 13661 - 14209 615 ## COG1268 Uncharacterized conserved protein 16 7 Op 2 . + CDS 14246 - 15001 743 ## COG0456 Acetyltransferases + Term 15027 - 15078 13.9 - Term 15020 - 15061 4.5 17 8 Tu 1 . - CDS 15124 - 15918 518 ## COG1526 Uncharacterized protein required for formate dehydrogenase activity - Prom 16158 - 16217 10.8 + Prom 16046 - 16105 8.4 18 9 Op 1 23/0.000 + CDS 16138 - 16923 880 ## COG0725 ABC-type molybdate transport system, periplasmic component 19 9 Op 2 13/0.000 + CDS 16937 - 17608 535 ## COG4149 ABC-type molybdate transport system, permease component 20 9 Op 3 1/0.688 + CDS 17609 - 18217 214 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 18223 - 18282 4.2 21 10 Op 1 2/0.125 + CDS 18305 - 19306 961 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 22 10 Op 2 . + CDS 19327 - 19857 694 ## COG0521 Molybdopterin biosynthesis enzymes + Term 19927 - 19968 2.1 23 11 Tu 1 . - CDS 19915 - 20406 588 ## COG0315 Molybdenum cofactor biosynthesis enzyme - Prom 20456 - 20515 4.3 + Prom 20288 - 20347 6.5 24 12 Op 1 4/0.125 + CDS 20468 - 21727 1241 ## COG0303 Molybdopterin biosynthesis enzyme 25 12 Op 2 4/0.125 + CDS 21724 - 22200 469 ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein 26 12 Op 3 21/0.000 + CDS 22201 - 22653 681 ## COG0314 Molybdopterin converting factor, large subunit 27 12 Op 4 2/0.125 + CDS 22650 - 22883 196 ## COG1977 Molybdopterin converting factor, small subunit 28 12 Op 5 5/0.062 + CDS 22889 - 23494 502 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A 29 12 Op 6 1/0.688 + CDS 23507 - 24529 876 ## COG2896 Molybdenum cofactor biosynthesis enzyme + Prom 24788 - 24847 8.9 30 13 Tu 1 . + CDS 24944 - 25294 390 ## COG1846 Transcriptional regulators + Term 25340 - 25387 6.1 - Term 25326 - 25374 10.1 31 14 Op 1 18/0.000 - CDS 25495 - 26688 1064 ## COG0477 Permeases of the major facilitator superfamily 32 14 Op 2 . - CDS 26688 - 27128 319 ## COG1846 Transcriptional regulators - Prom 27171 - 27230 7.4 + Prom 27178 - 27237 7.2 33 15 Tu 1 . + CDS 27290 - 28051 531 ## SE1836 hypothetical protein - Term 27932 - 27991 -0.2 34 16 Tu 1 . - CDS 28048 - 28299 149 ## - Prom 28420 - 28479 5.6 + Prom 28362 - 28421 9.2 35 17 Op 1 1/0.688 + CDS 28451 - 29701 1449 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 29714 - 29765 7.4 36 17 Op 2 . + CDS 29778 - 32933 2965 ## COG0841 Cation/multidrug efflux pump + Term 32939 - 32983 10.3 - Term 32917 - 32981 13.6 37 18 Tu 1 . - CDS 32983 - 33300 269 ## SERP1842 hypothetical protein - Prom 33532 - 33591 6.0 38 19 Tu 1 . - CDS 33602 - 33772 183 ## SERP1841 hypothetical protein - Prom 33821 - 33880 7.2 + Prom 33683 - 33742 7.9 39 20 Tu 1 . + CDS 33974 - 34822 697 ## COG0679 Predicted permeases + Term 34858 - 34930 10.0 - Term 34850 - 34914 7.1 40 21 Op 1 1/0.688 - CDS 35021 - 35812 216 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 41 21 Op 2 . - CDS 35840 - 36703 716 ## COG4975 Putative glucose uptake permease - Prom 36913 - 36972 9.0 + Prom 36896 - 36955 7.9 42 22 Op 1 . + CDS 37001 - 39136 2121 ## COG0550 Topoisomerase IA + Term 39145 - 39190 0.6 + Prom 39164 - 39223 5.7 43 22 Op 2 . + CDS 39330 - 40583 1330 ## COG2252 Permeases + Term 40584 - 40635 13.3 - Term 40578 - 40617 2.2 44 23 Tu 1 . - CDS 40640 - 41038 280 ## SERP1834 hypothetical protein - Prom 41113 - 41172 9.5 45 24 Op 1 40/0.000 + CDS 41394 - 41702 512 ## PROTEIN SUPPORTED gi|15927831|ref|NP_375364.1| 30S ribosomal protein S10 46 24 Op 2 58/0.000 + CDS 41730 - 42392 1130 ## PROTEIN SUPPORTED gi|242243947|ref|ZP_04798390.1| 50S ribosomal protein L3 47 24 Op 3 61/0.000 + CDS 42421 - 43044 1038 ## PROTEIN SUPPORTED gi|27468741|ref|NP_765378.1| 50S ribosomal protein L4 48 24 Op 4 61/0.000 + CDS 43044 - 43319 456 ## PROTEIN SUPPORTED gi|27468740|ref|NP_765377.1| 50S ribosomal protein L23 49 24 Op 5 60/0.000 + CDS 43348 - 44181 1439 ## PROTEIN SUPPORTED gi|242243950|ref|ZP_04798393.1| 50S ribosomal protein L2 50 24 Op 6 59/0.000 + CDS 44200 - 44526 576 ## PROTEIN SUPPORTED gi|242243951|ref|ZP_04798394.1| 30S ribosomal protein S19 51 24 Op 7 61/0.000 + CDS 44554 - 44907 569 ## PROTEIN SUPPORTED gi|27468737|ref|NP_765374.1| 50S ribosomal protein L22 52 24 Op 8 50/0.000 + CDS 44931 - 45584 1100 ## PROTEIN SUPPORTED gi|27468736|ref|NP_765373.1| 30S ribosomal protein S3 53 24 Op 9 50/0.000 + CDS 45587 - 46021 749 ## PROTEIN SUPPORTED gi|27468735|ref|NP_765372.1| 50S ribosomal protein L16 54 24 Op 10 50/0.000 + CDS 45999 - 46220 342 ## PROTEIN SUPPORTED gi|21283890|ref|NP_646978.1| 50S ribosomal protein L29 55 24 Op 11 50/0.000 + CDS 46224 - 46508 465 ## PROTEIN SUPPORTED gi|242243956|ref|ZP_04798399.1| 30S ribosomal protein S17 56 25 Tu 1 . - CDS 46532 - 46954 725 ## PROTEIN SUPPORTED gi|27468731|ref|NP_765368.1| 50S ribosomal protein L14 - Prom 47059 - 47118 5.2 57 26 Op 1 57/0.000 + CDS 46539 - 46907 613 ## COG0093 Ribosomal protein L14 58 26 Op 2 48/0.000 + CDS 46949 - 47266 535 ## PROTEIN SUPPORTED gi|27468730|ref|NP_765367.1| 50S ribosomal protein L24 59 26 Op 3 50/0.000 + CDS 47274 - 47831 922 ## PROTEIN SUPPORTED gi|242243959|ref|ZP_04798402.1| 50S ribosomal protein L5 60 26 Op 4 50/0.000 + CDS 47854 - 48039 326 ## PROTEIN SUPPORTED gi|27468728|ref|NP_765365.1| 30S ribosomal protein S14 61 26 Op 5 55/0.000 + CDS 48070 - 48468 661 ## PROTEIN SUPPORTED gi|27468727|ref|NP_765364.1| 30S ribosomal protein S8 62 26 Op 6 46/0.000 + CDS 48493 - 49029 905 ## PROTEIN SUPPORTED gi|27468726|ref|NP_765363.1| 50S ribosomal protein L6 63 26 Op 7 56/0.000 + CDS 49061 - 49423 597 ## PROTEIN SUPPORTED gi|27468725|ref|NP_765362.1| 50S ribosomal protein L18 64 26 Op 8 50/0.000 + CDS 49444 - 49944 825 ## PROTEIN SUPPORTED gi|27468724|ref|NP_765361.1| 30S ribosomal protein S5 65 26 Op 9 48/0.000 + CDS 49961 - 50140 286 ## PROTEIN SUPPORTED gi|27468723|ref|NP_765360.1| 50S ribosomal protein L30 66 26 Op 10 53/0.000 + CDS 50157 - 50597 737 ## PROTEIN SUPPORTED gi|27468722|ref|NP_765359.1| 50S ribosomal protein L15 67 26 Op 11 28/0.000 + CDS 50597 - 51889 762 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 68 26 Op 12 6/0.062 + CDS 51907 - 52554 839 ## COG0563 Adenylate kinase and related kinases + Term 52683 - 52724 0.3 + Prom 52610 - 52669 3.1 69 27 Op 1 . + CDS 52743 - 52961 306 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 70 27 Op 2 . + CDS 52993 - 53106 201 ## PROTEIN SUPPORTED gi|27468718|ref|NP_765355.1| 50S ribosomal protein L36 71 27 Op 3 48/0.000 + CDS 53129 - 53494 605 ## PROTEIN SUPPORTED gi|27468717|ref|NP_765354.1| 30S ribosomal protein S13 72 27 Op 4 32/0.000 + CDS 53517 - 53906 654 ## PROTEIN SUPPORTED gi|27468716|ref|NP_765353.1| 30S ribosomal protein S11 + Term 53915 - 53955 -1.0 73 27 Op 5 50/0.000 + CDS 53983 - 54927 1226 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 74 27 Op 6 6/0.062 + CDS 54944 - 55312 591 ## PROTEIN SUPPORTED gi|242243974|ref|ZP_04798417.1| 50S ribosomal protein L17 + Prom 55493 - 55552 17.2 75 28 Op 1 15/0.000 + CDS 55607 - 56452 450 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 76 28 Op 2 34/0.000 + CDS 56449 - 57309 366 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 77 28 Op 3 8/0.000 + CDS 57299 - 58105 396 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 78 28 Op 4 7/0.062 + CDS 58109 - 58912 610 ## COG0101 Pseudouridylate synthase + Term 58929 - 58971 1.2 + Prom 58942 - 59001 2.6 79 29 Op 1 59/0.000 + CDS 59136 - 59609 817 ## PROTEIN SUPPORTED gi|242243979|ref|ZP_04798422.1| 50S ribosomal protein L13 80 29 Op 2 . + CDS 59629 - 60021 665 ## PROTEIN SUPPORTED gi|27468708|ref|NP_765345.1| 30S ribosomal protein S9 + Term 60042 - 60076 4.5 - Term 60069 - 60106 6.3 81 30 Tu 1 . - CDS 60280 - 61017 706 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 61172 - 61231 13.8 + Prom 61160 - 61219 11.4 82 31 Tu 1 . + CDS 61320 - 62075 752 ## COG1349 Transcriptional regulators of sugar metabolism + Term 62187 - 62240 14.1 + Prom 62161 - 62220 8.9 83 32 Op 1 4/0.125 + CDS 62429 - 62857 678 ## COG0698 Ribose 5-phosphate isomerase RpiB 84 32 Op 2 3/0.125 + CDS 62872 - 63387 774 ## COG0698 Ribose 5-phosphate isomerase RpiB 85 32 Op 3 3/0.125 + CDS 63400 - 64332 1020 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 86 32 Op 4 2/0.125 + CDS 64336 - 65313 1227 ## COG3684 Tagatose-1,6-bisphosphate aldolase 87 32 Op 5 13/0.000 + CDS 65333 - 65647 482 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 88 32 Op 6 8/0.000 + CDS 65653 - 67401 2087 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 89 32 Op 7 1/0.688 + CDS 67417 - 68829 1781 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 68897 - 68944 8.0 + Prom 68986 - 69045 6.8 90 33 Tu 1 . + CDS 69067 - 69933 895 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold + Term 70078 - 70120 -0.5 91 34 Tu 1 . - CDS 70010 - 71035 811 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 71071 - 71130 8.1 + Prom 71034 - 71093 7.3 92 35 Op 1 1/0.688 + CDS 71168 - 72172 1081 ## COG2130 Putative NADP-dependent oxidoreductases + Prom 72188 - 72247 5.9 93 35 Op 2 . + CDS 72271 - 73281 955 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 73423 - 73471 15.1 + Prom 73915 - 73974 5.5 94 36 Op 1 . + CDS 74030 - 74611 516 ## SE1776 hypothetical protein 95 36 Op 2 4/0.125 + CDS 74624 - 74863 281 ## COG5547 Small integral membrane protein 96 36 Op 3 . + CDS 74937 - 75437 772 ## COG1302 Uncharacterized protein conserved in bacteria + Term 75457 - 75506 15.2 - Term 75452 - 75488 8.2 97 37 Tu 1 . - CDS 75498 - 77420 1661 ## COG4264 Siderophore synthetase component - Prom 77479 - 77538 8.7 + Prom 77456 - 77515 13.8 98 38 Op 1 4/0.125 + CDS 77562 - 78743 935 ## COG0477 Permeases of the major facilitator superfamily 99 38 Op 2 1/0.688 + CDS 78733 - 80490 1618 ## COG4264 Siderophore synthetase component 100 38 Op 3 1/0.688 + CDS 80494 - 81555 697 ## COG3457 Predicted amino acid racemase + Term 81594 - 81641 3.1 + Prom 81572 - 81631 7.2 101 39 Op 1 3/0.125 + CDS 81757 - 82752 967 ## COG4594 ABC-type Fe3+-citrate transport system, periplasmic component 102 39 Op 2 20/0.000 + CDS 82764 - 83795 948 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 103 39 Op 3 1/0.688 + CDS 83792 - 84757 884 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component + Term 84786 - 84847 10.6 + Prom 84957 - 85016 8.7 104 40 Tu 1 . + CDS 85056 - 86429 1227 ## COG3314 Uncharacterized protein conserved in bacteria + Term 86663 - 86698 5.3 105 41 Tu 1 . - CDS 86607 - 86921 435 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides - Prom 86948 - 87007 6.9 - Term 86987 - 87033 5.4 106 42 Tu 1 . - CDS 87071 - 87331 452 ## SERP1772 hypothetical protein - Prom 87358 - 87417 7.5 + Prom 87428 - 87487 4.2 107 43 Op 1 1/0.688 + CDS 87507 - 88016 372 ## COG1988 Predicted membrane-bound metal-dependent hydrolases 108 43 Op 2 1/0.688 + CDS 88071 - 89261 1209 ## COG4284 UDP-glucose pyrophosphorylase 109 43 Op 3 1/0.688 + CDS 89276 - 89959 552 ## COG1272 Predicted membrane protein, hemolysin III homolog + Term 90079 - 90118 5.1 + Prom 89975 - 90034 8.6 110 44 Tu 1 . + CDS 90199 - 91536 1007 ## COG0477 Permeases of the major facilitator superfamily + Term 91567 - 91611 4.6 + Prom 91641 - 91700 10.0 111 45 Tu 1 . + CDS 91730 - 92197 390 ## SERP1767 hypothetical protein + Term 92258 - 92313 3.9 + Prom 92384 - 92443 9.2 112 46 Tu 1 . + CDS 92467 - 93906 1257 ## COG0477 Permeases of the major facilitator superfamily + Term 93913 - 93957 9.3 + Prom 93922 - 93981 9.3 113 47 Tu 1 . + CDS 94053 - 95120 1232 ## COG0489 ATPases involved in chromosome partitioning + Term 95149 - 95185 5.2 Predicted protein(s) >gi|224999836|gb|ACJC01000164.1| GENE 1 557 - 2530 1080 657 aa, chain + ## HITS:1 COG:SA2092 KEGG:ns NR:ns ## COG: SA2092 COG2207 # Protein_GI_number: 15927878 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 654 1 647 651 242 27.0 2e-63 MRENYSIRVFNNLAINTEKALSVKVFYCLKGKCEITINVQKHTLKKDDIAFVVMNDTYSL LSNTDTMCCIIDIPIHRYTSQKDTQFLISGTKIDERSRDRIKYWILKILELHCLSYNDVS EIQRLIQFLLIELSYLKKPKLDVNKDFYLSEDIHQYLVDHHDSKINKHELAEAVNLSNQA LTSMFKQTPFQTFNQYLNQLRLKFCLIDILTTHKPIEEIAIDHGFHHYSRFIQLFKNTYG YTPKLIRKDYIATSIFKNTAEEIDLDRHFLMNIHELQDLDSKIISKKYIEMSDKGKKYRS YDIYIEDNRSTILDQEQIIHIKRNLSLSQKSMRYVIELNYTSMIENKELCRYEMLKILRF CSGLNLIPTFKIITDRHDTFTSKEKMALKLTFQMLFIMLREFNQLEIEFIVEDMTLKQVV QLKKMISSYFEYYKLNYRIKNEKNGNVNYQNLEKQVTQIFIPINQLHLYIKEISFEKVIL ETSYLTDLKSEIVEYPWIQHIHTLIKMCGEVRGVLIQPSSDYATTVTYHSNLKPYHILSY VIRMFNQLRGTIVYKDDAIIMTKYKYEYQAIAISLKNTIKENANHQQLIFSDIQSLNHAE YEYIEMIPLLMNENDELDSHIPYPHQYWLAKLKSKESQQAIVDLPKMSIAHLTFLCS >gi|224999836|gb|ACJC01000164.1| GENE 2 2569 - 3297 491 242 aa, chain + ## HITS:1 COG:SA2091 KEGG:ns NR:ns ## COG: SA2091 COG1846 # Protein_GI_number: 15927877 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 240 1 241 247 106 31.0 3e-23 MQQQKIKQFLAHFVLDHVTIEYLKYGYQLTIEQLKLLIFILHFTENHKEELSLNMIIFYK NYQKNKLLKSITHLYEFNWISKKRHPYDQRRLVITLTQNQSSKITQLIEELEHFLEVKST LINEINHSTLLSYYLKCHSQFRVIEQSCTHQHLTLEELYLLGLLIISDNKTTFKSIKVHS LKGIISLGPIIKTLQSKGYLIKSRSRDDERYIVLTLRKEKINVIQSEIEECYNKLEQGIQ HV >gi|224999836|gb|ACJC01000164.1| GENE 3 3333 - 3656 448 107 aa, chain + ## HITS:1 COG:no KEGG:SERP1877 NR:ns ## KEGG: SERP1877 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 107 1 107 107 194 98.0 8e-49 MILDNVNPDDLFPTEKKGPSVLGVIEYNVQGQTKFEGAFIATNERLIMNVDMNGQFYYRN IRYDEINQIHFDGSDIIFEFNIGTVPMREIKTEDVQAFVDYIKQQIQ >gi|224999836|gb|ACJC01000164.1| GENE 4 4061 - 4405 379 114 aa, chain + ## HITS:1 COG:SA2089 KEGG:ns NR:ns ## COG: SA2089 COG1846 # Protein_GI_number: 15927875 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 114 1 114 115 129 84.0 1e-30 MGKIKDINDLVNATFQVKKFFRDTKKQYNLNYEEIYILNHILKSESNEISSKEIATCSEF KPYYLTKALQKLKDLNLLSKKRSVHDERTVIVFVSDEQREKIKKLILELENYIK >gi|224999836|gb|ACJC01000164.1| GENE 5 4510 - 5346 566 278 aa, chain - ## HITS:1 COG:SA2088 KEGG:ns NR:ns ## COG: SA2088 COG0829 # Protein_GI_number: 15927874 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreH # Organism: Staphylococcus aureus N315 # 65 278 1 214 214 280 65.0 2e-75 MGNQSWTGQLDLTVFNNGQSSKARNIYFEKALKVLRPIYLEQSPVPTFYIVNVGGGYLDG DRYRVNVNLEDKAQVVLTSQGATKIYKTPNNHVEQYQTFHLSNQSYMEFVADPIIAYENA KFYQHNTFHLKEDSAMFYTDILTPGYSSKGQDFTYKYMHLINEIYIENQLVVFDNMMLSP EKSKLDGIGYMENYTHLGSAYFIHPDVNQSLIDDIYVAVADFQKQYDCRIGISQLPTHGL AVRILTKRTQIIEEILTRVQSYINQTIYHRQINSLRKY >gi|224999836|gb|ACJC01000164.1| GENE 6 5346 - 5960 832 204 aa, chain - ## HITS:1 COG:SA2087 KEGG:ns NR:ns ## COG: SA2087 COG0378 # Protein_GI_number: 15927873 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Staphylococcus aureus N315 # 1 204 1 204 204 365 91.0 1e-101 MSNPIKIGIGGPVGAGKTQLIEKVVKRLAKEMSIGVITNDIYTKEDEKILVNTGVLPEDR IIGVETGGCPHTAIREDASMNFAAIDELLERNDDIELIFIESGGDNLAATFSPELVDFSI YIIDVAQGEKIPRKGGQGMIKSDFFIINKTDLAPYVGASLDQMAKDTEVFRGNRPFAFTN LKTDEGLEKVIEWIEQDVLLKGLA >gi|224999836|gb|ACJC01000164.1| GENE 7 5973 - 6662 647 229 aa, chain - ## HITS:1 COG:SA2086 KEGG:ns NR:ns ## COG: SA2086 COG0830 # Protein_GI_number: 15927872 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreF # Organism: Staphylococcus aureus N315 # 1 229 1 229 229 358 75.0 4e-99 MIDHQHLRLFQFCDSQFPTGAFSHSFGLETYIQREAVHDTETFIEWLTLFINEQLTYSDG LAMRIVYNALIRNDKDKILDINQKLFVQNLPKETRIGAKQMGTRMVKLALDLYESEWIQW YYDQMKSHKIQLHPAVCFTMLGHDLGVNVESIIDYYLYQNISSLTQNAVRAIPLGQTAGQ QVVTEMISHIEKVRNHILELAESDFGMTAPGLELNQMEHENVHVRIFIS >gi|224999836|gb|ACJC01000164.1| GENE 8 6655 - 7107 630 150 aa, chain - ## HITS:1 COG:SA2085 KEGG:ns NR:ns ## COG: SA2085 COG2371 # Protein_GI_number: 15927871 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreE # Organism: Staphylococcus aureus N315 # 1 150 1 150 150 243 90.0 8e-65 MIIEEIQGNIANLSQDEKQKHVEKVYLENSDLVKRIQRVKTDHGNEIGIRLKQPIDLQYG DILYQDDKNMIIVDVNSEDLLVIKPRSLKEMGDIAHQLGNRHLPAQFTETEMLIQYDYLV EDLLKELGIPYSHEDRKVNQAFRHIGHSHD >gi|224999836|gb|ACJC01000164.1| GENE 9 7121 - 8836 2400 571 aa, chain - ## HITS:1 COG:SA2084 KEGG:ns NR:ns ## COG: SA2084 COG0804 # Protein_GI_number: 15927870 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) alpha subunit # Organism: Staphylococcus aureus N315 # 1 571 1 571 571 1037 90.0 0 MSFKMTQSQYTSLYGPTVGDSVRLGDTNLFAQVEKDYANYGDEATFGGGKSIRDGMAQNP NVTRDDKNVADLVLTNALIIDYDKIVKADIGIKNGYIFKIGKAGNPDIMDNVDIIIGATT DIIAAEGKIVTAGGIDTHVHFINPEQAEVALESGITTHIGGGTGASEGAKATTVTPGPWH IHRMLEAAEEMPINVGFTGKGQAVNHTALIEQIHAGAIGLKVHEDWGATPSALSHALDVA DEFDVQVALHADTLNEAGFMEDTMAAVKDRVLHMYHTEGAGGGHAPDLIKSAAYSNILPS STNPTLPYTHNTVDEHLDMVMITHHLNASIPEDIAFADSRIRKETIAAEDVLQDMGVFSM VSSDSQAMGRVGEVVTRTWQVAHRMKEQRGPLDGDYEYHDNNRIKRYIAKYTINPAITHG ISDYVGSVEAGKLADLVMWEPEFFGAKPDLVVKGGMINSAVNGDANGSIPTSEPLKYRKM YGQFGGNITHTAMTFVSNTAYENGIYRQLNLKRMVRPVKNIRNLTKADMKNNNATPKIDV DPQTYEVFVDGNKITSEAAKELPLTQRYFLF >gi|224999836|gb|ACJC01000164.1| GENE 10 8839 - 9240 548 133 aa, chain - ## HITS:1 COG:SA2083 KEGG:ns NR:ns ## COG: SA2083 COG0832 # Protein_GI_number: 15927869 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) beta subunit # Organism: Staphylococcus aureus N315 # 1 133 1 134 136 193 76.0 7e-50 MIPGEIIVKNTEIEINKHHPETVIEVKNTGDRPIQVGSHFHFFEANKALEFDREKAYGKH LDIPAGAAVRFEPGDEKKVQLVEYSGRRKIYGFRGLVDGDIDEERVFRPNDSNQNAAVKN DAGEDNANKKGGK >gi|224999836|gb|ACJC01000164.1| GENE 11 9254 - 9523 332 89 aa, chain - ## HITS:1 COG:SA2082 KEGG:ns NR:ns ## COG: SA2082 COG0831 # Protein_GI_number: 15927868 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) gamma subunit # Organism: Staphylococcus aureus N315 # 1 89 12 100 100 147 89.0 4e-36 MIVVAAEVARRRKARGLKLNHPEALALISDELLEGARDGKTVAELMSYGKTILNEDDVME GVANMITELEIEATFPDGTKLITVHHPIV >gi|224999836|gb|ACJC01000164.1| GENE 12 9824 - 10726 897 300 aa, chain + ## HITS:1 COG:SA2081 KEGG:ns NR:ns ## COG: SA2081 COG4413 # Protein_GI_number: 15927867 # Func_class: E Amino acid transport and metabolism # Function: Urea transporter # Organism: Staphylococcus aureus N315 # 1 300 1 299 301 285 54.0 6e-77 MKLIKVILSSISQVVLINNLYTGLFILIGLFAVNWKVAISAIIASVMTWILAPHMNYTKD EIESGLAGFNPVLTAIALTLFLDSNWSGILITFVATILTLPIGAALREVLKPHKIAFLTS PFVIMTWITLLIPNQLKTLHTQIDIIPEHIEKVSLNNDHIRVHFFQSVLDGFGQIFLMPS IIGGLLILIGIFIGSKKAGIVSIIANIIGFLIIILLGGDYSSINDGIFGYNVVLSAIALG VTFETAIHSYLAMILGIVLTAFIHLGLSTLLAPLGLPPLTWPFIFATWIMLFAGIKNQSV >gi|224999836|gb|ACJC01000164.1| GENE 13 11160 - 12302 1251 380 aa, chain + ## HITS:1 COG:SA2080 KEGG:ns NR:ns ## COG: SA2080 COG1960 # Protein_GI_number: 15927865 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Staphylococcus aureus N315 # 3 378 7 382 384 594 74.0 1e-170 MESFLIHTDIQKKWIRKFKKIESEFKARAAENDIQSRFPYENIEWLIKEGYTKLTLPVEY GGEGATIEDMVILQSYLGAIDGATALSIGWHLSVIGQLYEQHMWTPSMLDSFAKEVVHGA LINRAVSEAETGSPTRGGRPSTHAVKVENGYVINGVKTFTSMSKALTHYIVGAYVEETKS MGFFLIPRSTKGVSIADNWDMVGMRATESHDLILDNVHVPNENFVESKRESRPNGWFLHI PSCYLGIAQAARDYAVDFAKNYRPNSITGTIDSLPTVQQNLGKMESLLLSARHFLWSTAR GYQSYTEDAQIWNETSASKVVVMNQGIEIVDLAMRIVGAKSLEMNRPLQRYYRDIRAGLH NPPMEDMAYTNIAKSITNKL >gi|224999836|gb|ACJC01000164.1| GENE 14 12611 - 13552 1000 313 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 3 311 4 312 313 488 74.0 1e-138 MTKVYFNHDGGVDDLVSLFLLLQMENIELVGVSTIGADCYLEPSLSASLKIINRFSDVEI NVAPSYERGKNPFPKEWRMHAFFMDALPVLNESCIPKRCKASEDEAYIDIIRKVKRCDEK VTLLFTGPLTDLAKAINYDNSILKNIEKLVWMGGTFLDKGNVEEPEHDGTAEWNAFWDPE AVKVVLDSDMIVDIVALESTNQVPLTMEVRQMWADKRQYLGVDFLGTSYAAVPPLTHFVT NSTYFLWDVLTTAYVGSPNLVESTKLKIDVVSQGPSQGRTFQSENGREVQVITDVNKQAF FKYITDLAKKIES >gi|224999836|gb|ACJC01000164.1| GENE 15 13661 - 14209 615 182 aa, chain + ## HITS:1 COG:SA2077 KEGG:ns NR:ns ## COG: SA2077 COG1268 # Protein_GI_number: 15927862 # Func_class: R General function prediction only # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 181 1 181 184 188 69.0 4e-48 MTTKHLVYTALMTAIICILGLVPSVPLPFMPVPIVLQNIGIFLAGIILGRKLGTTSVIVF LLLVATGLPVLSGGRGGIGVFAGPSTGFLFLYPVVAYFIGIIRDAYLHKINFLVIFIATL VIGVLGLDILGTIIMGFIIHIPISKAFILSFTFMPGDIIKAIIASLIGAAILNHSRFKTL IR >gi|224999836|gb|ACJC01000164.1| GENE 16 14246 - 15001 743 251 aa, chain + ## HITS:1 COG:SA2076 KEGG:ns NR:ns ## COG: SA2076 COG0456 # Protein_GI_number: 15927861 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Staphylococcus aureus N315 # 1 251 1 254 256 256 49.0 2e-68 MSKITFKDIYIDGNKITEDSRKVIYILPSQPLKYASNTWIYKTMPTMNQWLKDIEVQKKT HLNQSSYHLSFSFPANENIDEVLLEKIRDLGFQIGVLELYVIEAKALKELSRKRDVDIQL VTSSNINDYLHVYDAFARPFGDNYTNMVKQHIYSSHNLDDIERLVAYVNQQPVGIVDIIM TDKTIEIDGFGVLKEFQHQGIGSEIQAYVGRMANERPVILVADGEDTAKDMYLRQGYIYQ GFKYHILKENI >gi|224999836|gb|ACJC01000164.1| GENE 17 15124 - 15918 518 264 aa, chain - ## HITS:1 COG:SA2075 KEGG:ns NR:ns ## COG: SA2075 COG1526 # Protein_GI_number: 15927860 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Staphylococcus aureus N315 # 1 262 1 262 265 385 70.0 1e-107 MKKDVTQKQTIIKFENGHLYTASDSCVTEMPLTIKVNDIEFATIICSPNHLEELTLGFLA SEGIFLKRNDLQSIHIDESKGFAHVKLTQSVGQQFEHPTKRVLASCCGKSRAFYFQNDAA IAKTSMTNIQLQPKQVINLMTQLQDASIIFKQTGGLHNAAISDGKDFFEHRHDIGRHNAL DKLYGYCIQRHISVRDKILIFSGRISSEILIKAAKIGVGIILSKSAPTSLAIQLARDLNI TAIGFIRENHFNIYSHPERIINEF >gi|224999836|gb|ACJC01000164.1| GENE 18 16138 - 16923 880 261 aa, chain + ## HITS:1 COG:SA2074 KEGG:ns NR:ns ## COG: SA2074 COG0725 # Protein_GI_number: 15927859 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 260 1 259 260 303 68.0 3e-82 MKIKHIFITILTLSIVLAGCTNERGLNKEQNEKQSPKGDKQELQVSAAASLTEVSKSLGN EFKKDHPNVEIKFNYGGSGALRQQIEAGAPADVMMSANTKDIDLLKKKNKAHDTYNYAKN QLVLIGDKNKSYTSVKDLNQNDKLALGQIKTVPAGKYAKQYLDDQHLYGDVKDKIIFAKD VKQVLNYVEKGNAQEGFVYKTDLYQQKKKVNKVKVIEEIKLSKPITYKAGATSDKKIAKE WINFLKSNKAKQILKEYQFSV >gi|224999836|gb|ACJC01000164.1| GENE 19 16937 - 17608 535 223 aa, chain + ## HITS:1 COG:SA2073 KEGG:ns NR:ns ## COG: SA2073 COG4149 # Protein_GI_number: 15927858 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 223 1 223 223 335 82.0 4e-92 MPDLTSFWISFRVALISTIIVTIFGILISKWLYNKNRYWVKLLESFIILPIVLPPTVLGF ILLIIFSTRSPVGEFFTNILHLPVVFTLTGAVIASVIVSFPLMYQHTVNGFRSIDSKMLN TARTMGASETKIFFKLVLPLSKRSILAGIMMSFARAIGEFGATLMVAGYIPDKTNTLPLE IYFLVEQGKENEAWLWVLVLVAFAVTVIATINLVNRDTFREVD >gi|224999836|gb|ACJC01000164.1| GENE 20 17609 - 18217 214 202 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 198 2 210 245 87 29 3e-16 MLTIKLNGVLNQTEININIDDQLPKIYAIQGPSGIGKTTILNIIAGLKAINYSYIKVGKR VLTDSRHHLNVKVQQRRIGYLFQDYQLFPNMNVYNNITFMTKPSEHINKLIHTLKIEHLL EKYPVTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDKTKKEGIKLILKIFEAWKIPI IFVTHSNYEAQQMAHKIITIED >gi|224999836|gb|ACJC01000164.1| GENE 21 18305 - 19306 961 333 aa, chain + ## HITS:1 COG:SA2071 KEGG:ns NR:ns ## COG: SA2071 COG0476 # Protein_GI_number: 15927856 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Staphylococcus aureus N315 # 2 333 3 334 334 500 69.0 1e-141 MQERYSRQVLFKQIGLKGQSQLEKKHVLIVGMGALGTHLAEGLVRAGINKLTIVDRDYIE FSNLQRQTLFIERDAEDVLPKVIAAQKVLKEIRKDVEIDAYIEHVNYNFLEQHGIDVDII LDATDNFDTRELINDFAYKHQIPWIYGGVVQSTYVQATFIPGQTPCFNCLMPQLPSINLT CDTVGVIQPAVTMTTSLQLSDALKLLTGNKVNTHFTYGDIWEGDHYTFGFSRMQNEDCKT CGHAPTYPHLNQHQQDYATLCGRDTVQYKNADISQEILLSFLERNHIQHRTNLYMTMFRF REYRIVAFSGGRFLIHGTTEPKKAIQLMHQLFG >gi|224999836|gb|ACJC01000164.1| GENE 22 19327 - 19857 694 176 aa, chain + ## HITS:1 COG:SA2070 KEGG:ns NR:ns ## COG: SA2070 COG0521 # Protein_GI_number: 15927855 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzymes # Organism: Staphylococcus aureus N315 # 5 172 3 168 168 221 66.0 4e-58 MHKHQHQNIHLNRPIHVAILTVSDTRDYDSDKGGQLIQSLINQHENHVDINYYRIVKDDI EAITHQLKLWLASPNQLDVIITTGGTGISQRDVTIEAVRPLLTKELEGFGELFRYLSYTE DVGTRALLTRAIAGTCDNTLIFALPGSTGAIKLAIEKLIKPELSHLVFELNKDIRN >gi|224999836|gb|ACJC01000164.1| GENE 23 19915 - 20406 588 163 aa, chain - ## HITS:1 COG:SA2069 KEGG:ns NR:ns ## COG: SA2069 COG0315 # Protein_GI_number: 15927854 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 162 1 162 164 215 80.0 3e-56 MTHFTHINKQGNAKMVDVSNKKITKRVAEAHSSIIVNEKIYRQITQNTNSKGNVLNTAQI AGIMAAKNTSTIIPMCHPLPLTGIDVSFKWGSNNDDSYRLNITAVVSTTGKTGVEMEALT AASVTALTIYDMTKAIDKGMVIGETYLESKSGGKSGDFHRKNL >gi|224999836|gb|ACJC01000164.1| GENE 24 20468 - 21727 1241 419 aa, chain + ## HITS:1 COG:SA2068 KEGG:ns NR:ns ## COG: SA2068 COG0303 # Protein_GI_number: 15927853 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 419 1 419 419 616 74.0 1e-176 MSVEKRTPISVKEAINRIMKQHVEVKNINVNLDESLGHILAEDIVATYDIPRFNKSPYDG FAIRSEDSQGASGENRIEFEVIDHIGAGSVSEKTIDKNQAIRIMTGAQIPSGADAVVMFE QTIESETTFTIRKSFKHLENISLQGEEIKAGDIVLHKGMRINSGVIAVLATYGYTKVRVS RKPTVAVIATGSELLEVEDELEPGKIRNSNGPMIKALAKQFGIQVGMYKVQHDNLEKSIE VVRKALSEHDLVITTGGVSVGDFDYLPEIYKSIQAQILFNKVAQRPGSVTTVAFVDGKYL FGLSGNPSACYTGFELYVKPAVNKLMGAKACYPQIIKATLMEDFNKANPFTRLIRAKATL TKAGMTVIPSGFNKSGAVVAIAHANAMIMLPGGTRGFKAGNIVDVILTESNSFEEELIL >gi|224999836|gb|ACJC01000164.1| GENE 25 21724 - 22200 469 158 aa, chain + ## HITS:1 COG:SA2067 KEGG:ns NR:ns ## COG: SA2067 COG1763 # Protein_GI_number: 15927852 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Staphylococcus aureus N315 # 1 154 1 155 161 161 60.0 4e-40 MILQIVGMKNSGKTTLMNHAISFLKERGYSVATIKHNGHIGEEIELQSSDVDHMKHFAAG ADQSIVQGHHLQQTVTRNKKQSLREIIENSVTIDCSIILVEGFKEENYDKIIVYKNNDEL RTLQRLSHVIGKIETNHPRANNQLEHLLNKLIKDKGMN >gi|224999836|gb|ACJC01000164.1| GENE 26 22201 - 22653 681 150 aa, chain + ## HITS:1 COG:SA2066 KEGG:ns NR:ns ## COG: SA2066 COG0314 # Protein_GI_number: 15927851 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Staphylococcus aureus N315 # 1 146 1 146 148 233 86.0 1e-61 MKQFEIVTQPIETEQYRDFTINELQGAVVVFTGHVREWTKGIRTQHLEYEAYIPMAEKKL AQIGKEIEEKWPGTITTIVHRIGPLQISDIAVLIAVSSPHRKAAYEANEYAIERIKEIVP IWKKEIWDDGAEWQGHQKGTYNEAKKGKAR >gi|224999836|gb|ACJC01000164.1| GENE 27 22650 - 22883 196 77 aa, chain + ## HITS:1 COG:SA2065 KEGG:ns NR:ns ## COG: SA2065 COG1977 # Protein_GI_number: 15927850 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 93 57.0 1e-19 MKILYFAELKELLNRSTETIHLDTTITVQEFESYLLKRHRELKSKKFQIAVNEEFVRQDD MVQPGDTIALIPPVSGG >gi|224999836|gb|ACJC01000164.1| GENE 28 22889 - 23494 502 201 aa, chain + ## HITS:1 COG:SA2064 KEGG:ns NR:ns ## COG: SA2064 COG0746 # Protein_GI_number: 15927849 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Staphylococcus aureus N315 # 1 199 1 199 199 252 61.0 3e-67 MKAIILAGGESSRFGKAKAFAKIDNQYFYQKIVETLKSTNMFNRIIISTNSQLASQFEYE YVIIDDEHHQNKGPLTGIYSVMKQYMDEELFFIVSVDTPMITSKAVNGLYHFMVSNLIES RLDIVAFKEGQICIPTIGFYTLSTFPFIEKALNSNHLSLKHVFKQLSTDWLDVTEIDSPH YWYKNINFQHDLDSLKKQINE >gi|224999836|gb|ACJC01000164.1| GENE 29 23507 - 24529 876 340 aa, chain + ## HITS:1 COG:SA2063 KEGG:ns NR:ns ## COG: SA2063 COG2896 # Protein_GI_number: 15927848 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 340 1 340 340 557 78.0 1e-159 MKTVIQDKLGRPIRDLRISVTDRCNFRCDYCMPKEIFGDDYTFLPKDELLTFEELTRISK IYAQLGVKKIRITGGEPLLRRNLYKLVEQLNLIDGIEDIGLTTNGLLLKKHGKNLYQAGL RRINVSLDAIEDNVFQEINNRNIKASTILEQIDYAVSIGFEVKVNVVIQKGVNDNQIIPM IDYFKNKNIEVRFIEFMDVGNDNGWNFNKVVTKEEMLNMIEQHFEISPVAPKYYGEVAKY FRHKDSDAQFGLITSVSESFCSTCTRARLSSDGKFYGCLFASSEGFDVKALIRNGATDDD LKAQFKRLWSIRNDQYSDKRTMQTIENNRKKKINMNYIGG >gi|224999836|gb|ACJC01000164.1| GENE 30 24944 - 25294 390 116 aa, chain + ## HITS:1 COG:SA2062 KEGG:ns NR:ns ## COG: SA2062 COG1846 # Protein_GI_number: 15927847 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 116 1 116 116 155 84.0 1e-38 MSNKVQRFIESERELSQLKHWLKTTYRISIEEFVVLYKVYADTKISGKELRDTLHFEMLW DTSKIDVIIRKIYKKELISKLRSETDERQVYYFFDAKQKKLLDKMTGEIETISIAN >gi|224999836|gb|ACJC01000164.1| GENE 31 25495 - 26688 1064 397 aa, chain - ## HITS:1 COG:SA2061 KEGG:ns NR:ns ## COG: SA2061 COG0477 # Protein_GI_number: 15927846 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 2 392 3 397 403 444 68.0 1e-124 MNQSTITKDPIFTKSFNINFAINFFVYLCMYLLIVVIASYSKSEYHASDSVAGLVVGLFI VGSLIGRFVTGKYVNRFGPKKILIFGLICLVVTQLLYFIPGSVWFLMIVRLLNGLATAVA TTATGTIAAYITPPTRKSEGISLFSLSLVLGTAIGPFFGMLLMNSFSINILFTICVILGV ISGLLSLLIKINFTTVKENTITHKRFNLAHFVAKEAIPVAFVMLLIGVTYAAILTYLQAF AVERDLVTSASYFFIFYAIASLITRPIAGRLMDDKNENVVVYPAFIFLVLSFLLLMLSFN GWVLLIAGIALGIGYGNLSSSMQAIAIKVSPSNKYGLATSTYFIGLDIGIGFGPSLLGLF THMISYSQLYGIMGILGFATLVIYIIVHGRKVHSTSY >gi|224999836|gb|ACJC01000164.1| GENE 32 26688 - 27128 319 146 aa, chain - ## HITS:1 COG:SA2060 KEGG:ns NR:ns ## COG: SA2060 COG1846 # Protein_GI_number: 15927845 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 4 144 1 142 146 147 52.0 7e-36 MLDILTNEFFNSFIGIYRPYIKLTQPILDQHQIHTGQWLVLRDIANYQPTTLVKISHRRS IEKPTTRKLIKVLLDNGWVMTKTGVDKREKLLSLTDKGQSLFETINKKVTVIQQDIIKKT GLTDEQVFDITNAMSQIHEAMIKEEQ >gi|224999836|gb|ACJC01000164.1| GENE 33 27290 - 28051 531 253 aa, chain + ## HITS:1 COG:no KEGG:SE1836 NR:ns ## KEGG: SE1836 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 253 1 253 253 484 94.0 1e-135 MNLKLDHIIHYLHQLESFKFPGEILELQNGGRHHHLGTFNQIAPIKNSYIELLDVENESK LNNVAKTEEGRVSFATKIVQDHFKQGFKGICFRTKDIDQVKSTLENRGVDVIGPIDMERE NKKGHQLRWRLLYIANPDYRVKPPFFIEWDNSRKQNLSQIHNFNLSEFEIKELIITSTQR ETTVSLWKEWYNMKIVNETATSTDLKLESDEVIYKIEDGKDSGFHTLIMTDIHATAPYSI FIRGAKYRFEPPN >gi|224999836|gb|ACJC01000164.1| GENE 34 28048 - 28299 149 83 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKFILLLFIILNLVAIIITINHPLTISYFSLRVIFVAFIFIISIFFIFLRTTNYELILS ILSTVFAFVHIGLIIHSAYLYLY >gi|224999836|gb|ACJC01000164.1| GENE 35 28451 - 29701 1449 416 aa, chain + ## HITS:1 COG:SA2057 KEGG:ns NR:ns ## COG: SA2057 COG2348 # Protein_GI_number: 15927842 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 416 1 421 421 656 80.0 0 MEKMNITNQQHDAFVKSHPNGDLLQLSKWADTKKLTGWYSRRIAVGENGQIKGVGQLLFK KIPKLPYTLCYVSRGFVADYNNKEVLEALLSYAKEVARDEKSYAIKIDPDVEVDKGAEAL KNLRELGFKHKGFKEGLSKDYIQPRMTMITPIDKTDDELVQSFERRNRSKVRLALKRGTK VERSNREGLKVFANLMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLEPKPVLD MVNQDLEAQLAEKEKLQSKKQDKKTLNKLNDIENKIKKTNELKSDLTELEKSEPEGIYLS GALLMFAGNKSYYLYGASSNDYRDFLPNHHMQFEMMKYAREHGATTYDFGGTDNDPDKDS EHYGLWAFKRVWGTYLSEKIGEFDYVLNQPLYHLVEKVKPRLTKAKIKISRKLKGK >gi|224999836|gb|ACJC01000164.1| GENE 36 29778 - 32933 2965 1051 aa, chain + ## HITS:1 COG:SA2056 KEGG:ns NR:ns ## COG: SA2056 COG0841 # Protein_GI_number: 15927841 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Staphylococcus aureus N315 # 1 1048 1 1055 1055 1411 75.0 0 MIKKLLQFSLGNKFAIFLMVVLIILGGVYSSAKLKLELLPDVENPVISVQTTMSGATPQS TQDEISSKIDNQVRSLAYVNSVKTESIPNASIVTVEYDNGTDMDKAEEQLKKEIDKIKFK DGVGEPELTRNSMDAFPIVAYSFSSNNQKLKDVTNKLNQQLVPKLQTIDGVQNAQLNGQT NREVSLKFKQKNLDEKGLTANDVENYIKTATRETPLGLFQFNKSNKSIIVDGQFKSVDAF KNLKIPLSISGQAGQNDSDSDNDSLMPTDNNRTSNSSTHMAQKGQMPSVPLKDLADISVG DERTSISKTNGKDAVNLQIMKSQDANTVQVAREVQKKVDEFVRNESGMKSIKTMDTAKPI EDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIALIALKLSNVSLNIL TLGALTVAIGRVIDDSIVVVENIFRRLSDPNEKLKGENLIISATREVFKPIMSSTLVTIV VFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITLVPSLGATFFKNGVKNREQKGGLG VVGRAYRSALNWSLNHKWIVLIVSIFILVGSVVIGARNLGTSYISTGDNKFLALTYTPKP GETQKSITQHAEKVQNYLDKKDKVETVQYSIGGPTPQDPTGSTNSMAIMIKYQSDTPNFD EEPDKVLKHIETFKQPGEWKNQDLGTGAGNNSVEVTVKGPNTSAMKDTVNRVEKMMTDIK GITNVKSDLSQTYDQYEIKVDQNKAADNGISAAQLAMNLNENLPEKTISTVNEKGKSIDV KVKQNKQTDWSSQKIKNIKLNKPTGGTIKLSEIASLKKSYTPSKLTQEDGDYATTVTGKV TDKDVGGKSQQVMAKVKDLEKPSHIKINVGGATDDIDKAISQLAMAMIAAIIIVYLILVI TFRGGLAPFTILFSLPFTVIGVVLALIITGETISVPSLIGMLMLIGIVVTNAIVLIDRVI NNEKQGMQMKSALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGMAATVIGGL ISSTLLTLFVVPVMYEILFTLKNKLTKKFNM >gi|224999836|gb|ACJC01000164.1| GENE 37 32983 - 33300 269 105 aa, chain - ## HITS:1 COG:no KEGG:SERP1842 NR:ns ## KEGG: SERP1842 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 83 1 83 105 88 100.0 7e-17 MKLYLILLPVLYLIVSYISIFKMHSVITRILRIVMGILLLFVVALTTLQFPKENWWVFVV LLLLVGNVEVTGFKELKDDKKGVSILNILSLLLFVIFIILIFILY >gi|224999836|gb|ACJC01000164.1| GENE 38 33602 - 33772 183 56 aa, chain - ## HITS:1 COG:no KEGG:SERP1841 NR:ns ## KEGG: SERP1841 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 56 1 56 56 68 94.0 9e-11 MDLNSKLSELKYDYTRLQNDLEKRESLHQDIDPLLKQLENIEQEIAYVRSKLNQQS >gi|224999836|gb|ACJC01000164.1| GENE 39 33974 - 34822 697 282 aa, chain + ## HITS:1 COG:SA2054 KEGG:ns NR:ns ## COG: SA2054 COG0679 # Protein_GI_number: 15927838 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 1 282 21 302 302 389 80.0 1e-108 MNYLKATDSQVLSTLVLNVTLPSLVIVNLNSAKLDVSFSILPIMMIIYGIVAKIIVIWFF RKYDNHMRGSVGMMTGSMNIGLFAYPLVEAIWPSKGMIYFGMVDIGGAIIMFGITYFVGS YYSEGSDQFNFKFLGKKLVQSVPLVTYMIMFGLNMSHIHIWQPAIDFFSVLSKANMPLSM ILLGVMLNFSIEREYLPVTIKYLCLHYGLGVLAGTLVHFLLPVSDDMIKTTLLITWLLPV GVAIIPYSIQFKYKTLPFVGMVTNLTIIISIIILYIYQAAFV >gi|224999836|gb|ACJC01000164.1| GENE 40 35021 - 35812 216 263 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 5 250 1 238 242 87 27 2e-16 MFEELENKVVLVTGAATGIGKSIAENFGKAKAKVVINYRSDRHHDEIEEIKQTVAKFGGQ TLVVQGDVSIEEDIKRMIETTINHFGTLDIIINNAGFENSIPTHEMSIDDWQKVIDINLT GAFVGSREAINQFLKENKKGTIINISSVHDTIPWPNYVHYAASKGGLKLMMETMSMEYAQ YGIRINNISPGAIFTEHTEEKFSDPTTREETIKMIPAREIGNAQDIANAVLFLSSDLASY IHGTTLYVDGGMMNYPAFMGGKG >gi|224999836|gb|ACJC01000164.1| GENE 41 35840 - 36703 716 287 aa, chain - ## HITS:1 COG:SA2053 KEGG:ns NR:ns ## COG: SA2053 COG4975 # Protein_GI_number: 15927836 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 287 1 287 287 374 83.0 1e-104 MQIVDFLIALLPALFWGSVVIINVFVGGGPYNQIRGTTLGTLFIGFSLLATGHAAFDNLT VIIVGLVSGALWAFGQGNQLKSVHLIGVSKTMPISTGMQLVGTTLFSAIFLGEWSTIVQV VLGLIAMILLVVGISLTSLKAKSEGKSDNPEFKKAMGILLLSTIGYVGYVVLGDIFGVSG TDALFFQSIGMAIGGLVLSMNHNTSIKSTALNLIPGVIWGIGNLFMFYSQPKVGVATSFS LSQLLVIVSTLGGIFILGEKKDRRQMIGIWSGIIVIVIASIILGNLK >gi|224999836|gb|ACJC01000164.1| GENE 42 37001 - 39136 2121 711 aa, chain + ## HITS:1 COG:SA2051_1 KEGG:ns NR:ns ## COG: SA2051_1 COG0550 # Protein_GI_number: 15927834 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Staphylococcus aureus N315 # 1 596 1 596 596 796 70.0 0 MKSLILAEKPSVGRDIANALNLQQKSNGYIEGKQYIVTWALGHLVTNATPEQYNPSYKEW NLEDLPIIPKKMKTVVISKTNRQFKVVKSLILDKNVKEIIIATDAGREGELVARLILDKV GNKKPIKRLWISSVTKKAIQEGFKQLKNGNAYQNLYKAALARSEADWIVGINATRALTTK YDAQLSLGRVQTPTIQLVKSRQDEINYFKSEKYYTLSINVDGYDLNLNQQKRYKDKKELE LIEHEIKHQEGKILEVKGKNKKSYAQPLFNLTDLQQEAYKRYKMGPKETLNTLQHLYERH KLVTYPRTDSNYLTHDMVDTIQERLRAILATDYKSHVRDLISETFSSKMHIFNNQKVSDH HAIIPTEVRPSIEQLSQREFKIYMLIAERFLENLMNPYLYEVLTIHAQLKGYHFVLKEKI PKQLGYKALKDNPSSNTLTHSFKEGQLFNVHRIDIHEHETKAPEYFNEGSLLKAMENPQN HIDLNDKKYAKTLKHTGGIGTVATRADIIEKLFNMNALESRDGKIKVTSKGKQILELSPS ELTSPILTAQWEEKLMLIEKGKYNSQKFIQEMKNFTFKVVNKIKSSEQKYKHDNLTTTEC PTCGKFMIKVKTKNGQMLVCQDPKCKTKKNIQRKTNARCPNCKKKMTLFGKGKEAVYRCV CGHTETQSQMDKRMREKTNGKVSRKEMKKYINKKEEIDNNPFKDALKNLKL >gi|224999836|gb|ACJC01000164.1| GENE 43 39330 - 40583 1330 417 aa, chain + ## HITS:1 COG:SA2050 KEGG:ns NR:ns ## COG: SA2050 COG2252 # Protein_GI_number: 15927833 # Func_class: R General function prediction only # Function: Permeases # Organism: Staphylococcus aureus N315 # 1 416 28 443 444 603 89.0 1e-172 MAYILAVNPQILSLAGVKGATSDMKMDQGAIFVATALAAFVGSLFMGLIAKYPIALAPGM GLNAFFAFTVVLTMGIPWQVGLTGVLFSGIFFALLTVTGLREVIINAIPHQMKLAVSAGI GLFITFVGLQSSGIIIKSDSTLVKLGHLTEAPVLLAIFGIIVTVILYAMKVPGSIFVGMI VTAVAGMLTGQIHPPSGIIGEVPSIKPTFGAAFESFKDPGQLFTIQFLIVILTFLFIDFF DTAGTLVAVATQAGLMKDNKLPRAGRALFSDSLATIVGSVFGTTTTTSYIESTSGVAVGA RTGFASIVTGVCFLLALFFSPLIEVVTSAVTTPALVVVGVLMAANFADINWKQFEVAVPA FITIIMMPLSYSIATGIACGFIFYPITMIITKKYKEVHPIMYFLMALFILYFIFVHK >gi|224999836|gb|ACJC01000164.1| GENE 44 40640 - 41038 280 132 aa, chain - ## HITS:1 COG:no KEGG:SERP1834 NR:ns ## KEGG: SERP1834 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 132 1 132 132 186 96.0 2e-46 MKNGVKMSLAIIGVFLIVCEFFYGIPFLGGSVILSFGWQPLLFNALLYLVLIIILLVDSQ NSIKPMFVIPFLGLIGSFIAFLPVIGMVIHWILFFLMIFFVFIVLVAPTYIPNKNARVVY TQYKERIKEDND >gi|224999836|gb|ACJC01000164.1| GENE 45 41394 - 41702 512 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15927831|ref|NP_375364.1| 30S ribosomal protein S10 [Staphylococcus aureus subsp. aureus N315] # 1 102 1 102 102 201 100 9e-51 MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKD SREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL >gi|224999836|gb|ACJC01000164.1| GENE 46 41730 - 42392 1130 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243947|ref|ZP_04798390.1| 50S ribosomal protein L3 [Staphylococcus epidermidis W23144] # 1 220 1 220 220 439 100 1e-122 MTKGILGRKIGMTQVFGENGELIPVTVVEASQNVVLQKKTEEVDGYNAIQVGFEDKQAYK KGSKSNKYANKPAEGHAKKADTAPKRFIREFRNVNVDEYEVGQEVSVDTFETGDIIDVTG VSKGKGFQGAIKRHGQGRGPMAHGSHFHRAPGSVGMASDASKVFKGQKMPGRMGGNTVTV QNLEVVQIDTENSVILVKGNVPGPKKGLVEITTSIKKGNK >gi|224999836|gb|ACJC01000164.1| GENE 47 42421 - 43044 1038 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468741|ref|NP_765378.1| 50S ribosomal protein L4 [Staphylococcus epidermidis ATCC 12228] # 1 207 1 207 207 404 100 1e-112 MANYDVLKVDGSKSGSVELNDAVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG GRKPWRQKGTGRARQGTIRAPQWRGGGVVFGPTPRSYAYKMPKKMRRLALRSALSFKVQE NSFTIVDTFGFEAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVTTAQG LNVLDLTSADSVIITEAAAKKVEEVLA >gi|224999836|gb|ACJC01000164.1| GENE 48 43044 - 43319 456 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468740|ref|NP_765377.1| 50S ribosomal protein L23 [Staphylococcus epidermidis ATCC 12228] # 1 91 1 91 91 180 100 3e-44 MEARDVLKRPVITEKSSEAMAEDKYTFDVDTRANKTQVKIAVEEIFDVKVDSVNIINYKP KKKRMGRYQGYTNKRRKAIVKLKEGSIDLFN >gi|224999836|gb|ACJC01000164.1| GENE 49 43348 - 44181 1439 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243950|ref|ZP_04798393.1| 50S ribosomal protein L2 [Staphylococcus epidermidis W23144] # 1 277 1 277 277 558 100 1e-158 MALKKYKPITNGRRNMTTLDFAEITKTTPEKSLLQPLPKRAGRNNQGKLTVRHHGGGHKR QYRVIDFKRNKDGITAKVDSIQYDPNRSANIALLVYADGEKRYIIAPKGLQVGQTVESGA EADIKVGNALPLQNIPVGTVIHNIELKPGKGGQLARSAGASSQVLGKEGKYVLIRLRSGE VRMILSTCRATIGQVGNLQHELVNVGKAGRSRWKGVRPTVRGSVMNPNDHPHGGGEGRAP IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKKK >gi|224999836|gb|ACJC01000164.1| GENE 50 44200 - 44526 576 108 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243951|ref|ZP_04798394.1| 30S ribosomal protein S19 [Staphylococcus epidermidis W23144] # 1 108 1 108 108 226 99 3e-58 MCGVKLHAHNKKGGAQMARSIKKGPFVDDHLMKKVEAQDGSEKKQVIKTWSRRSTIFPNF IGHTFAVYDGRKHVPVYVTEDMVGHKLGEFAPTRTFKGHAADDKKTRR >gi|224999836|gb|ACJC01000164.1| GENE 51 44554 - 44907 569 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468737|ref|NP_765374.1| 50S ribosomal protein L22 [Staphylococcus epidermidis ATCC 12228] # 1 117 1 117 117 223 100 2e-57 MEAKAVARTIRIAPRKVRLVLDLIRGKNAGEAIAILKLTNKASSPVIEKVLMSALANAEH NYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSHITIVVSDGKEEAKEA >gi|224999836|gb|ACJC01000164.1| GENE 52 44931 - 45584 1100 217 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468736|ref|NP_765373.1| 30S ribosomal protein S3 [Staphylococcus epidermidis ATCC 12228] # 1 217 1 217 217 428 99 1e-119 MGQKINPIGLRVGVIRDWEAKWYAEKDFASLLHEDLKIRKFIDNELKEASVSHVDIERAA NRINIAIHTGKPGMVIGKGGSEIEKLRNKLNTLTDKKVHINVIEIKKIDIDARLVAENIA RQLENRASFRRVQKQAITRAMKNGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRAD IDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSEGGK >gi|224999836|gb|ACJC01000164.1| GENE 53 45587 - 46021 749 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468735|ref|NP_765372.1| 50S ribosomal protein L16 [Staphylococcus epidermidis ATCC 12228] # 1 144 1 144 144 293 100 3e-78 MLLPKRVKYRRQHRPKTTGRSKGGNYVTFGEYGLQATTTSWITSRQIESARIAMTRYMKR GGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEVAGVPEEVAREALRL ASHKLPVKSKFVKREELGGETNES >gi|224999836|gb|ACJC01000164.1| GENE 54 45999 - 46220 342 73 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|21283890|ref|NP_646978.1| 50S ribosomal protein L29 [Staphylococcus aureus subsp. aureus MW2] # 1 73 1 73 73 136 98 5e-31 MVKQMKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTV AREREIEQSKANQ >gi|224999836|gb|ACJC01000164.1| GENE 55 46224 - 46508 465 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243956|ref|ZP_04798399.1| 30S ribosomal protein S17 [Staphylococcus epidermidis W23144] # 1 94 1 94 94 183 98 3e-45 MKEEVTKVSERNDRKVYVGRVVSDKMDKTITVLVETYKTHKLYGKRVKYSKKYKTHDENN SAKLGDIVKIQETRPLSATKRFRLVEIVEESVII >gi|224999836|gb|ACJC01000164.1| GENE 56 46532 - 46954 725 140 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27468731|ref|NP_765368.1| 50S ribosomal protein L14 [Staphylococcus epidermidis ATCC 12228] # 1 139 1 139 140 283 99 2e-75 MHVGTSLNYVNLFDWYYSTSGASDTIFMKFPSRNSRATGPKIRVPRGPLSSRMITHAFSS NLIYEPSSRRTPDFVRTTTAFTTSPFLTTPPGVAFLTVHTMISPMFAVLRPDPPNTLIVR TSRAPELSATFKRVSCWIIR >gi|224999836|gb|ACJC01000164.1| GENE 57 46539 - 46907 613 122 aa, chain + ## HITS:1 COG:SA2037 KEGG:ns NR:ns ## COG: SA2037 COG0093 # Protein_GI_number: 15927820 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosomal protein L14 # Organism: Staphylococcus aureus N315 # 1 122 1 122 122 209 97.0 7e-55 MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDIIVCTVKNATPGGVVKKGDVVKA VVVRTKSGVRREDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPE VL >gi|224999836|gb|ACJC01000164.1| GENE 58 46949 - 47266 535 105 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468730|ref|NP_765367.1| 50S ribosomal protein L24 [Staphylococcus epidermidis ATCC 12228] # 1 105 1 105 105 210 100 2e-53 MHIKKGDNVKVIAGKDKGKEGKVVATEPKKDRVVVEGVNVIKKHQKPTQLNPEGGILETE AAIHVSNVQLLDPKTNEPTRVGYKTVDGKKVRIAKKSGEEIKANN >gi|224999836|gb|ACJC01000164.1| GENE 59 47274 - 47831 922 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243959|ref|ZP_04798402.1| 50S ribosomal protein L5 [Staphylococcus epidermidis W23144] # 1 185 1 185 185 359 99 3e-98 MKGGSTLNRLKERFNTEVTENLVKKFNYSSVMEVPKIEKIVVNMGVGDAVQNSKVLDNAV EELELITGQKPLVTKAKKSVATFRLREGMPIGAKVTLRGERMYEFLDKLIAVSLPRVRDF QGVSKTAFDGRGNYTLGVKEQLIFPEIDYDKVTKVRGMDIVIVTTANTDEEARELLTNFG MPFRK >gi|224999836|gb|ACJC01000164.1| GENE 60 47854 - 48039 326 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468728|ref|NP_765365.1| 30S ribosomal protein S14 [Staphylococcus epidermidis ATCC 12228] # 1 61 1 61 61 130 98 3e-29 MAKTSMVAKQQKKQKFAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKAS W >gi|224999836|gb|ACJC01000164.1| GENE 61 48070 - 48468 661 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468727|ref|NP_765364.1| 30S ribosomal protein S8 [Staphylococcus epidermidis ATCC 12228] # 1 132 1 132 132 259 100 5e-68 MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKEIAEILKSEGFIKNVEYVEDDKQGVI RLFLKYGQNNERVITGLKRISKPGLRVYAKANEVPKVLNGLGIALVSTSEGVITDKEARK RNVGGEIIAYVW >gi|224999836|gb|ACJC01000164.1| GENE 62 48493 - 49029 905 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468726|ref|NP_765363.1| 50S ribosomal protein L6 [Staphylococcus epidermidis ATCC 12228] # 1 178 1 178 178 353 100 2e-96 MSRVGKKIIDIPSDVTVTFDGSHVTVKGPKGELERTLNERMTFKQEENTVEVVRPSDSKE DRTDHGTTRALLNNMVLGVSQGYEKTLELVGVGYRAQMQGKDLVLNVGYSHPVEIKAEEG ITFAVEKNTTVKVSGVSKEQVGAIASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK >gi|224999836|gb|ACJC01000164.1| GENE 63 49061 - 49423 597 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468725|ref|NP_765362.1| 50S ribosomal protein L18 [Staphylococcus epidermidis ATCC 12228] # 1 120 1 120 120 234 100 1e-60 MISKIDKNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDVKGVTLAQASSQD KDIANTSASKVDLATTVGQEIAKKANDKGIKEIVFDRGGYLYHGRVKALADAARENGLEF >gi|224999836|gb|ACJC01000164.1| GENE 64 49444 - 49944 825 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468724|ref|NP_765361.1| 30S ribosomal protein S5 [Staphylococcus epidermidis ATCC 12228] # 1 166 1 166 166 322 100 5e-87 MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAI KKAVEAAKKDLVVVPRVEGTTPHTITGQYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGI TDILSKSLGSNTPINMVRATINGLQNLKNAEDVAKLRGKSVEELYN >gi|224999836|gb|ACJC01000164.1| GENE 65 49961 - 50140 286 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468723|ref|NP_765360.1| 50S ribosomal protein L30 [Staphylococcus epidermidis ATCC 12228] # 1 59 1 59 59 114 100 1e-24 MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLLTIEEK >gi|224999836|gb|ACJC01000164.1| GENE 66 50157 - 50597 737 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468722|ref|NP_765359.1| 50S ribosomal protein L15 [Staphylococcus epidermidis ATCC 12228] # 1 146 1 146 146 288 100 7e-77 MKLHELKAAEGSRRVRNRVGRGAATGNGKTSGRGQKGQKARSGGKVRPGFEGGQLPLFRR LPKRGFTNINRKEYAIVNLDQLNKFEDGTEVTPALLVESGVVKNEKSGIKVLGNGSLDKK LTVKAHKFSASAAEAIDAKGGAHEVI >gi|224999836|gb|ACJC01000164.1| GENE 67 50597 - 51889 762 430 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 5 426 14 435 447 298 39 9e-80 MFQTFVRFFTTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPEAFNHPQGSQGATELLNTF GGGALKRFSIFAMGIMPYITASIVMQLLQMDIVPKFTEWAKQGEMGRRKINNVTRYFAII LAFIQSIGMAFQFNNYLKGQLIIEQSVMSYLLIAVVLTAGTAFLIWLGDQITQFGVGNGI SLIIFAGILSTLPSSLEQFAQSVFVGQDDTSLAWLKILGLIVALILLTVGAIFVLEAKRK IPIQYAKKQSAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFFPKAEWAQNIA DTANPSSNIGMIIYVVLIIAFAYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT RVLYRLTFVGSIFLAAIAILPIIATKFMGLPQSIQIGGTSLLIVIGVAIETMKTLEAQVT QKEYKGFGGR >gi|224999836|gb|ACJC01000164.1| GENE 68 51907 - 52554 839 215 aa, chain + ## HITS:1 COG:SA2027 KEGG:ns NR:ns ## COG: SA2027 COG0563 # Protein_GI_number: 15927809 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Staphylococcus aureus N315 # 1 215 1 215 215 381 92.0 1e-106 MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKDETDLGKEAKSYMDRGELVP DEVTVGIVKERISEDDAKKGFLLDGFPRTIDQAESLSQIMSELDREIDAVINIEVPEEEL MNRLTGRRICEKCGTTYHLVFNPPKVDGICDIDGGKLYQREDDNPETVSNRLSVNVKQSK PILEYYNNKGVLKNIDGSKDIDEVTKDVIDILDHL >gi|224999836|gb|ACJC01000164.1| GENE 69 52743 - 52961 306 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 122 81 7e-27 MAKQDVIELEGTVLDTLPNAMFKVELENGHEILAHVSGKIRMNYIRILPGDKVTVEMSPY DLSRGRITYRYK >gi|224999836|gb|ACJC01000164.1| GENE 70 52993 - 53106 201 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468718|ref|NP_765355.1| 50S ribosomal protein L36 [Staphylococcus epidermidis ATCC 12228] # 1 37 1 37 37 82 100 1e-14 MKVRPSVKPICEKCKVIKRKGKVMVICDNPKHKQRQG >gi|224999836|gb|ACJC01000164.1| GENE 71 53129 - 53494 605 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468717|ref|NP_765354.1| 30S ribosomal protein S13 [Staphylococcus epidermidis ATCC 12228] # 1 121 1 121 121 237 100 1e-61 MARIAGVDIPREKRIVISLTYVYGIGTSTANKIVEEANVSADTRVKDLTDDELGRIREVV DGYKVEGDLRREQNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKK K >gi|224999836|gb|ACJC01000164.1| GENE 72 53517 - 53906 654 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468716|ref|NP_765353.1| 30S ribosomal protein S11 [Staphylococcus epidermidis ATCC 12228] # 1 129 1 129 129 256 100 3e-67 MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTP FAAQMASETASKTAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNG CRPPKRRRV >gi|224999836|gb|ACJC01000164.1| GENE 73 53983 - 54927 1226 314 aa, chain + ## HITS:1 COG:SA2023 KEGG:ns NR:ns ## COG: SA2023 COG0202 # Protein_GI_number: 15927804 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Staphylococcus aureus N315 # 1 314 1 314 314 546 98.0 1e-155 MIEIEKPRIETIEVSEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG VLHEFSAVDNVVEDVSTIIMNIKKLALKIYSEEDKTLEIDVKDEGEVTASDITHDSDVEI LNPELKIATVSKGGHLKVRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVSLTDEAQNAEIMIEK EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK YKLEDLGLGLRKED >gi|224999836|gb|ACJC01000164.1| GENE 74 54944 - 55312 591 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243974|ref|ZP_04798417.1| 50S ribosomal protein L17 [Staphylococcus epidermidis W23144] # 1 122 1 122 122 232 100 6e-60 MGYRKLGRTSDQRKAMLRDLATSLIVSERIETTEARAKEVRSLVEKLITLGKKGDLASRR NAAKTLRNVEILNEDDSTQTALQKLFGEIAERYSERQGGYTRILKVGPRRGDGAESVIIE LV >gi|224999836|gb|ACJC01000164.1| GENE 75 55607 - 56452 450 281 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 22 256 132 366 398 177 38 1e-43 MFSDIKILGVINVNESNPIIEFKDVSFQYQSDAAFTLNRVSFSIPAGQWTSIVGHNGSGK STIAKLMVGIEEPSEGQILFQNLPIDSQNKREVRKHIGIVFQNPDNQFVGSIVKFDVAFG LENQLVPYKVMVSKVNQVLTEVDMINKADDEPHSLSGGQKQRVAIAGVLALNPDVLILDE ATTMLDPHGKSSLLNLVNEVKVNNNVTIISITHDLDEAMHADQIIVLNKGTVFKQGTPQD IFKYEEALISVGLDLPFPLKMNRLLGFDSTYVTYEGLIKKL >gi|224999836|gb|ACJC01000164.1| GENE 76 56449 - 57309 366 286 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 257 132 375 398 145 32 8e-34 MSIQFNQVSYIYQQGTPYEFEAIKDISLTLEQGKYYAIIGQTGSGKSTLIQHLNALLKPT TGSVNINGLEVTSKTKDKHLRYIRKEVGVVFQFPESQLFEDSVEKEIEFGPKNFNMNLKN VKDKAFQLLLELGFSRNVMSSSPFQMSGGQMRKIAIVSILAMDPQVIILDEPTAGLDPNS KHQVMSLIKKIQIEENKTIILVSHDMDDVARYSDEVVVMNKGTIVEKSNPRNLFNQKSRL LKWHIDLPKVVKLQKDIEKKYNILFPQLALNEEEFVKLYKEWHHEK >gi|224999836|gb|ACJC01000164.1| GENE 77 57299 - 58105 396 268 aa, chain + ## HITS:1 COG:SA2019 KEGG:ns NR:ns ## COG: SA2019 COG0619 # Protein_GI_number: 15927800 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 1 268 1 268 268 342 74.0 3e-94 MKNKLIIGRYLPLQSIVHQLDPRAKLIFVFFFIILIFFCHSLGTYAWLFLFLILFIKLAR IPFWFLIKGLTPIFFFLIFTFSMHVLFTNGGIILFQWKFITIESNGFMEGIYISLRLIFI VMIATIMTLSTSPIDLTDAFEKLFAPLKVIKVPVHQLSMMMSIALRFIPTLMDELEKIIL AQKSRGSEISSGGLITRIRAFIPIMIPLFISAFQRAEELAIAMEVRGYDINIKRTSYRLL HWQYKDTITVLLLIPIATILFILKFSGV >gi|224999836|gb|ACJC01000164.1| GENE 78 58109 - 58912 610 267 aa, chain + ## HITS:1 COG:SA2018 KEGG:ns NR:ns ## COG: SA2018 COG0101 # Protein_GI_number: 15927799 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Staphylococcus aureus N315 # 1 265 1 265 267 430 80.0 1e-120 MRILVEIAYQGNQFLGFQIQQQGRTVQQQFEKILKRMHKHHVRIHPSSRTDRGVHAYQQF FHFDTELNIDNKQWQYAMNRALPDDIYVKNVRNVDEYFHCRYDCVGKRYRYKVYQGNHRN PFKSGTETFVYETLDYDKMNKAAQEFIGTHDFTGFCSQKTEVESKVRTLYQSKIVATKEG FDYVVTGSGFLYNMVRVLVAFLIEVGKGKREPNDVPKLLEDRNRNNVPLTAPPDGLYLEK IYLSPEELIQEYGKDIKIHYKKSLEKH >gi|224999836|gb|ACJC01000164.1| GENE 79 59136 - 59609 817 157 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243979|ref|ZP_04798422.1| 50S ribosomal protein L13 [Staphylococcus epidermidis W23144] # 1 157 1 157 157 319 100 4e-86 MNEAFIFRRTIIMRQTFMANESNIERKWYVIDAEGQTLGRLSSEVAAILRGKNKVTYTPH VDTGDYVIIINASKIEFTGNKEQDKMYHRHSNHPGGLKSISAGELKRTNPERLLETSIKG MLPSTRLGEKQGKKLFVYGGAEHPHAAQQPENYELRG >gi|224999836|gb|ACJC01000164.1| GENE 80 59629 - 60021 665 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468708|ref|NP_765345.1| 30S ribosomal protein S9 [Staphylococcus epidermidis ATCC 12228] # 1 130 1 130 130 260 99 2e-68 MAQVEYKGTGRRKNSVARVRLVPGEGNITVNERDVRDYLPFESLILDLNQPFDVTETKGN YDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKK ARRSPQFSKR >gi|224999836|gb|ACJC01000164.1| GENE 81 60280 - 61017 706 245 aa, chain - ## HITS:1 COG:SA1999 KEGG:ns NR:ns ## COG: SA1999 COG0846 # Protein_GI_number: 15927777 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Staphylococcus aureus N315 # 3 242 2 241 243 353 69.0 1e-97 MKKTDIQQLKDIVNSSNQIVFFTGAGISVASGIPDFRSMGGLYDEISKDGQSPEYLLSID HLHDNKESFINFYHERLLIADKKPNIVHQWIAQLENQQKSLGVITQNIDGLHEDAGSHNI DELHGSLNRFYCINCYEEYSKSYVMTHHLKYCEKCGNVIRPDIVLYGEMLNQKTVFKALD KIQHADTLIVLGSSLVVQPAAGFVSEFKGDNLVIINRDATPYDHTASLVIHDDMTSVIEE IVIVK >gi|224999836|gb|ACJC01000164.1| GENE 82 61320 - 62075 752 251 aa, chain + ## HITS:1 COG:SA1998 KEGG:ns NR:ns ## COG: SA1998 COG1349 # Protein_GI_number: 15927776 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Staphylococcus aureus N315 # 1 250 1 250 251 354 72.0 8e-98 MNKYDRLDEIAKLVNKRGSVRTNEIVEDLNVSDMTVRRDLAELEEKGVLTKIHGGARSNS AFQYKEMSHQEKHTRFIEEKRFIAKNAVDLIEDGDTIFLGPGTTVQKLAEEINHYSLTII TNCLPVFNILMKKQTLHFRVYLLGGEMRDLTEAFVGEMTNQLLSQLRFSKMFFSSNGVKD GLAMTSSIEEAYTQQIALSHSLEKYLLIDSSKIGKDDFSSFCELRELNAVLTDNNDLEKK EKIESYVEVIS >gi|224999836|gb|ACJC01000164.1| GENE 83 62429 - 62857 678 142 aa, chain + ## HITS:1 COG:SA1997 KEGG:ns NR:ns ## COG: SA1997 COG0698 # Protein_GI_number: 15927775 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 142 1 142 142 206 78.0 1e-53 MTIIIGSDVDGKRLKELIKAYLEDNDYDVLDVTEGKDLDFVDSTVSVAKEVQKSDDNLGI AIDAYGAGSFIVATKIKGMIAAEVSDERSAYMTRSHNNARMITMGAEIVGDTLAKNVAKE FVNGHYDGGRHQIRVDMLNKMC >gi|224999836|gb|ACJC01000164.1| GENE 84 62872 - 63387 774 171 aa, chain + ## HITS:1 COG:SA1996 KEGG:ns NR:ns ## COG: SA1996 COG0698 # Protein_GI_number: 15927774 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 171 1 171 171 294 81.0 5e-80 MKIAIGCDHIVTDTKMEVSQHLKSQGHEVIDVGTYDFTRTHYPIYGKKVGEKVASGEADL GVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFIFDIV DAFIEAEYKPTEENKKLIAKINHLEAHNNDQTDPHFFDEFLEKWNKGEYHD >gi|224999836|gb|ACJC01000164.1| GENE 85 63400 - 64332 1020 310 aa, chain + ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 310 1 310 310 386 62.0 1e-107 MILTLTLNPSVDISYPLDQFNLDTVNRVSQTSKTAGGKGLNVTRVLSEFGEDVIASGFLG GALGQYIEEQIETTRIKQAFFKIKGETRNCIAILHEGQQTEILEKGPTIELKESEEFKSH LLKLFKETDVAVMSGSLPKGLNTDYYTDIVRLAKEQGILTILDSSGQSLEEVLISNVKPT VIKPNIDELSQLLKYKVTSDIKELKTAVSQPIFNDIEWIIVSLGSEGAFAKHNHKFYKVN IPNIKVVNPVGSGDSTVAGIASALIHQQTDEELLKKANAFGMLNAMEQQTGHINTDKFDE IFKQIEVIEV >gi|224999836|gb|ACJC01000164.1| GENE 86 64336 - 65313 1227 325 aa, chain + ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 1 325 1 325 326 579 89.0 1e-165 MTKSQQKVSSIEKLSNQEGIISALAFDQRGALKRMMAEHQSETPTVEQIEQLKVLVSEEL TQYASSILLDPEYGLPASDARNNDCGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQG ANAVKFLLYYDVDDTEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNKSAEFA KVKPHKVNEAMKLFSEDRFNVDVLKVEVPVNMNFVEGFSEGEVVYTKEEAAQHFRDQDEA THLPYIYLSAGVSAELFQDTLKFAHDSGAQFNGVLCGRATWSGAVKVYIEEGEQAAREWL RTVGFKNIDDLNTVLKTTATSWKNK >gi|224999836|gb|ACJC01000164.1| GENE 87 65333 - 65647 482 104 aa, chain + ## HITS:1 COG:SA1993 KEGG:ns NR:ns ## COG: SA1993 COG1447 # Protein_GI_number: 15927771 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Staphylococcus aureus N315 # 1 103 1 103 103 143 74.0 7e-35 MNRDEVQLLGFEIVAYAGDARSKLLEALNAAKDSEFDKAEQLVEEANECIANAHKAQTNL LAQEAKGEDIAYSITMIHGQDHLMTTLLLKDLMKHLIELYKKGS >gi|224999836|gb|ACJC01000164.1| GENE 88 65653 - 67401 2087 582 aa, chain + ## HITS:1 COG:SA1992 KEGG:ns NR:ns ## COG: SA1992 COG1455 # Protein_GI_number: 15927770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Staphylococcus aureus N315 # 1 582 2 570 570 929 80.0 0 MNKLIAWIEKGKPFFEKISRNIYLRAIRDGFIAAIPIILFSSIFILITYVPNVFGFTWSK TMEGILMKPYNYTMGIVGLLVAGTTAKSLTDSYNRKLDKTNQINFISTMMAAICGFLFLA ADPVKDGGFSSAFMGTKGLLTAFISAFITVIVYNFFVKRNITIKMPKEVPPNISQVFKDI FPLSAVILILYALDLLSRAIVHTNVANAVLKVFEPLFTAADGWIGVTLIFGAFAFFWFVG IHGPSIVEPAIAAITYANLETNLHLIQAGEHADKVITPGTQMFVATMGGTGATLVVPFMF MWLTKSKRNKAIGRASVVPTFFGVNEPILFGAPLVLNPVFFIPFIFAPIVNIWIFKFFVD VLNMNSFSIFLPWTTPGPLGIVMGTGFAFWSFVLAILLIVVDVIIYYPFLKVYDEQVLEE ELGNKEANNELKEKVSANFDTKKADAILATAGASEADTDDTSSVDETTSTSSTDTISEQT NVLVLCAGGGTSGLLANALNKAAEEYEVPVKAAAGGYGAHMDIMKDYQLIILAPQVASNY EDIKQDTDRLGIKLAKTEGAQYIKLTRDGEAALEFVKQQFNN >gi|224999836|gb|ACJC01000164.1| GENE 89 67417 - 68829 1781 470 aa, chain + ## HITS:1 COG:SA1991 KEGG:ns NR:ns ## COG: SA1991 COG2723 # Protein_GI_number: 15927769 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Staphylococcus aureus N315 # 1 470 1 470 470 889 94.0 0 MTKKLPDDFIFGGATAAYQAEGATQTDGKGRVAWDTYLEENYWYTAEPASDFYNRYPVDL ELSERFGVNGIRISIAWSRIFPKGYGEVNQKGVEYYHNLFKECHKRHVEPFVTLHHFDTP EVLHKDGDFLNRKTIDYFVDYAEFCFKEFPEVKYWTTFNEIGPIGDGQYLVGKFPPGIKY DFEKVFQSHHNMMVAHARAVKLFKDKNYKGEIGVVHALPTKYPYDPSNPEDVRAAELEDI IHNKFILDATYLGKYSRETMEGVQHILSVNGGQLEISDEDYKILDEAKDLNDFLGINYYM SDWMRGYEGESEITHNATGDKGGSKYQLKGVGQREFDVDVPRTDWDWMIYPQGLYDQIMR VVKDYPNYHKIYITENGLGYKDVFDEKEKTVHDDARIDYIKQHLNVIADAIADGANVKGY FLWSLMDVFSWSNGYEKRYGLFYVDFETQERFPKKSAYWYKELAESKEIK >gi|224999836|gb|ACJC01000164.1| GENE 90 69067 - 69933 895 288 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 4 286 3 287 289 307 56.0 2e-83 MKSKFTILLFTIFSTTVLVLVIIYNKTQSQSYISTQYSNNKLKTTATIFLHGYGGSERSE TFMVKQALNKNVTNEVITARVSREGKVYFDKKLSKDAANPIVKVEFKDNKNGNFKENAFW IKEVLSQLKSQFGIQQFNFVGHSMGNMSFAFYMKNYGDDLHLPQLKKEVNIAGVYNGILN MNEEVNEIIVDKQGKPSRMNPAYRQLLSLHKIYSGKEIEVLNIYGDLQDGSHSDGRVSNS SSQSLQYLLRGSAKSYQEMKFKGAKAQHSQLHENKDVANKIIQFLWGT >gi|224999836|gb|ACJC01000164.1| GENE 91 70010 - 71035 811 341 aa, chain - ## HITS:1 COG:BH0875 KEGG:ns NR:ns ## COG: BH0875 COG2141 # Protein_GI_number: 15613438 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus halodurans # 1 331 1 329 335 218 35.0 1e-56 MRLSLLDYVPLFEGRTPNDALKHSIKLAQHAEKLGYLRYWVAEHHQVYSVVSSAPEIIMM SILEHTQHIRVGSGGVMLPHYSPYKVAEQFKIMEARHPQRIDMAIGRSPSFKNVNAALNE NKNEKLPFNTQITDLLKYFNNDTTQDHRFKSLLATPMVTSFPQLYILGMSNRSAKLAAQR GLPFVIARMGQSETDLHEAISTYRKYFKAYHGEINNAKPYVILATFVVTASNLSRVKQLL HALQLWLMRINYLNQPKSYPSIETAQNKHYSQRELEKLEKMKSKIIYGMPNDVAEQLTLL HQQFKVDEILILPHVFGEDARMESIELIANELIPSCSRDEF >gi|224999836|gb|ACJC01000164.1| GENE 92 71168 - 72172 1081 334 aa, chain + ## HITS:1 COG:SA1989 KEGG:ns NR:ns ## COG: SA1989 COG2130 # Protein_GI_number: 15927767 # Func_class: R General function prediction only # Function: Putative NADP-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 1 331 1 331 333 500 72.0 1e-141 MNNEQIVFNKVPDGMPQDDTFKYEDIDVIEPSENELQLKTLYISVDPYMRGRMTNADSYV DPFKQGEPFNGHTVSKVLKSKDSNFDEGDIVVGMLPWKKINTVKSEYVNKVPSSDVPLHL YLSVLGMPGQTAYHGLLDIGQPKEGETVVISAASGAVGSVVGQIAKLKGCRVVGIAGGDE KVNYLKNELHFDAGIDYKKDNFPEALKEAVPNGIDVYFENVGGYIGDEVFKHLNTHARIP VCGAISSYNHPEKDIGPRIQQTLIKNQAMMRGFLVAEFADSFKEASEQLAQWVQENKIKT QVSVEDGFDKVPQAFRNLLTGDNFGKQVIKVASE >gi|224999836|gb|ACJC01000164.1| GENE 93 72271 - 73281 955 336 aa, chain + ## HITS:1 COG:SA1988 KEGG:ns NR:ns ## COG: SA1988 COG0604 # Protein_GI_number: 15927766 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 1 335 1 335 335 453 65.0 1e-127 MKAIGFKSPFQLDEGNCFEEFNFDIPHPSGHELLVKVQSISVNPVDTKQRTMPVDKAPRV LGFDAVSVIEKIGDQVSMFQEGDVVFYSGSPNQNGSNEEYQLIEEYLVAKAPKNLKSEQA TSLPLTGLTAYETLFDVFGISKNPSENKGKSLLIINGAGGVGSIATQIAKFYGLKVITTA SREDTIKWSINMGADIVLNHRKDLRQQFKDNHIEGVDYIFCTFDTDKYYEMMVNLVKPRG HIATIVAFNSQQDLNLLKSKSVTFTHEFMFSRPLHHTDDVIKHHEYLKDIAEKVEQGYYQ PTTTRVINGLSVDSLYEAHQILESHSMIGKLVINLK >gi|224999836|gb|ACJC01000164.1| GENE 94 74030 - 74611 516 193 aa, chain + ## HITS:1 COG:no KEGG:SE1776 NR:ns ## KEGG: SE1776 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 193 1 193 193 324 98.0 1e-87 MYNLKLTFAKEVTCEVKRLKNFILGLLIVAIVGFLLFMYIDDSRIQSYQDYFLQFNWFQP LLIGLAGLLILIGLILVLSIFKPTHRKPGLYKDFDDGHIYVSRKAVEKTIYDTIAKYDQV RQPNVVSKLYNKKNKSFIDIKTDFFVPNHVQVKSLTESIRADIKSNVEHFTEIPVRKLEV NVRDQKTSGPRVL >gi|224999836|gb|ACJC01000164.1| GENE 95 74624 - 74863 281 79 aa, chain + ## HITS:1 COG:SA1985 KEGG:ns NR:ns ## COG: SA1985 COG5547 # Protein_GI_number: 15927763 # Func_class: S Function unknown # Function: Small integral membrane protein # Organism: Staphylococcus aureus N315 # 1 79 1 79 79 120 83.0 7e-28 MADNNNQNGQDATQQFINILKSFKWRIIGFLAFLIIAILFLTLGFWKTILIIVLCLIGIG IGYIKDRTQDFLNFLNRWS >gi|224999836|gb|ACJC01000164.1| GENE 96 74937 - 75437 772 166 aa, chain + ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 152 1 154 169 204 88.0 7e-53 MAVDNNKAKQAYDNQTGVNEQERKEQQQAQNNQPQFENKLTFSDEVVEKIAGIAAREVKG ILDMKGGFTDSFTNAFSSGNNVTTGVSVEVGEKQAAVDLKVILEYGESAPKIFRKVTDLV KEQVKYITGLEVVEVNMQVDDVMTKKEWQQKNEKDNKENNEREGLK >gi|224999836|gb|ACJC01000164.1| GENE 97 75498 - 77420 1661 640 aa, chain - ## HITS:1 COG:SA1983 KEGG:ns NR:ns ## COG: SA1983 COG4264 # Protein_GI_number: 15927761 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Staphylococcus aureus N315 # 3 639 16 658 658 754 61.0 0 MTEDEHNVHDFLKHHDSKWSSNYIDHLLDGRDKVSQRLITSLHRENLVKSRDHSRVLNRR HFAGYGVNVIAILEIYFPTSNIYLYAPITGMHAFDRLDVEGPFYFKNLSKEDDFERVLHP NQILDWILIEDENLNNEASVQFRNDLNNSAANMTFALSFQHHTMRNDRAPLYHLIKNAND SYLRSEQSVIEGHPLHPGAKLRKGMNAKENFMYSSEFGNVIHLKAVFIHKSISRIQSLNV DYNDAVKQMFPDLIKTLEKEFGEDFNLQNYHLMMVHPWQVKHILQSDYQDELNEKLILIS NHSVPYYAGLSFRTLVPKQPDLSPHIKLSTNVHITGEIRTLSEQTTYNGPLVTQILREIM SKDEDFSRYQSTYIDENAGIHFYNRNDNETIQTDRSEQLGTLFRNNLYQFISNETVPVIP SSLVATYPYNTEAPICTLIKTYQNTHQYKNFEEAAKQWIKDYSKALLGLVIPLYSKYGIS LEAHLQNSVATFNKDGALDMIYIRDFEGLRIDNEQLNNAGFTTQHFHEKSRILTNSKTSV FNKMFYSTVQNHLGELVITIAKYSDSKVLEQEIWQIIAQTVEDIFNHMTHISKQHLNNIK RIIFASEIDYKCVTTMRLEDQAHEYTYIKVNNPLHRKNDL >gi|224999836|gb|ACJC01000164.1| GENE 98 77562 - 78743 935 393 aa, chain + ## HITS:1 COG:SA1982 KEGG:ns NR:ns ## COG: SA1982 COG0477 # Protein_GI_number: 15927760 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 391 1 394 397 529 74.0 1e-150 MAKYFFSSSFLLFLGNWIGQVGLNWFVLTTYHNAVYLGLVNFCRLIPILLLSVWAGSIAD KYDKGLLLRITISSSFIITALLCLLTYSLNTIPIFIILLYATFRGILSAVETPVRQAVLP DLSSKISTTQAVSFHSFIINICRSIGPAIAGGLIAVYHTPTTFLAQAVCYFIAAVLCIPI HFEVIVSQKEGKALPLKVVLNYFKSNLEGSQIFITSIIIMATGFSYTTVLPVLTNHIFPG QSQVFGIAMTFCAIGGIVATIVLPSILKHLSTVKMYYLSSILFGMALLGIIIHHLVVMFI CITLIGLFSQWARTTNRVYFQHSVKDCDRGKVLSIVMMDRGMIPLGSLIMSFFADMFGIL TTFTIMGISTISISLIFYIIQRISNMEESNNES >gi|224999836|gb|ACJC01000164.1| GENE 99 78733 - 80490 1618 585 aa, chain + ## HITS:1 COG:SA1981 KEGG:ns NR:ns ## COG: SA1981 COG4264 # Protein_GI_number: 15927759 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Staphylococcus aureus N315 # 1 585 1 585 585 706 63.0 0 MNHKEWLLADKNIQYRTINAMIKEHIVFEGMCIKEGTRKVEILLNEHLLSLKVARKSALK RYVFTGDIVLENKKLSQSVESLEELLQILTEIFHINISKRLYDELIHSRDSLYETYKHFY NRQTLIHQSMKFSKLPNSINFIAWLQHLQDSGMTDDLSYSESLVIEGHPTHPLTKTKLPL STNELKLYAPEFEKVIPLNIMLIEKNHVVTTAINDDQNFILNQVIPEYRDRLKCYLEPLR LNLNNYRVMLIHPWQYNHTIGEQFEEWIAKKILLPTPFTIESKATLSFRTMDLIHKPYHV KLPVNVQATSAIRTVSSVTTVDGPKLSNALQGLLQEFPELQVAMEPFGAYAHTASDLSKQ LALIIRQKPTIYDYGCTVVTASLVNPNPIDNHAVVDSYLKWIENEITLDHIKHFIAVYTQ TLVTPLIAYIQNYGIALEAHMQNTIVNLGPNYKMKFIVRDLGGSRIDLNTLKQKVPQIDV TNESLIADTIEEVIAKFQHAVIQNQLAELIHHFNQYDEVIEEELFEIVREEIEMAIDNDK PHAEKLKKLLFGSTITVKALLSMRMENKVKKYLNTKLDNPIKKEV >gi|224999836|gb|ACJC01000164.1| GENE 100 80494 - 81555 697 353 aa, chain + ## HITS:1 COG:SA1980 KEGG:ns NR:ns ## COG: SA1980 COG3457 # Protein_GI_number: 15927758 # Func_class: E Amino acid transport and metabolism # Function: Predicted amino acid racemase # Organism: Staphylococcus aureus N315 # 1 347 1 347 356 439 63.0 1e-123 MANVRVNLSKIKYNAKVLQSLLECKQIHFTPVIKCVAGDKHIVSSIKSLGITHFAESRLD NIEQLKDLGITFTLLRPTVKADLEKMISRVEMSIQTELTTIKKLNTLAKSLDIKHQIMLM VDWKDGREGVLTYDVVRYVQEILKLSHIQLVGLAFNFMCFKSEAPNEKDVRMINKFIHDV ESETHFKFRIISGGNSSMLPQTLYNHLDKINDLRIGEALLRGIDTTTNHSINSLYQNAIV LEAEIIEIKPRIYQKNNQSYLQAIVDIGYLDTFIEGIKPLGDDIRILGASSDHLMIDLNN QDHYQIGDKLQFSLNYEALSQSMYMKNLTKLYSSDSKIESLVQNFDMPIYSHC >gi|224999836|gb|ACJC01000164.1| GENE 101 81757 - 82752 967 331 aa, chain + ## HITS:1 COG:SA1979 KEGG:ns NR:ns ## COG: SA1979 COG4594 # Protein_GI_number: 15927757 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-citrate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 327 1 327 327 426 71.0 1e-119 MRGLKILSVIGLLFVLIATAACGNNNSSNSSKESSKDGVEIKHEEGTTKVPKHPKRVVVL EYSFVDALVALDVKPVGIADDNKKNRIIKPLRDKIGKYTSVGTRKQPNLEEISKLKPDLI IADNNRHKGIYKDLNKIAPTIELKSFDGDYNENIDAFKTISKALDKEEEGKKRLEEHDKK IEEYKKEITMDKNLKVLPAVAAKSGLLAHPSNSYVGQFLSQLGFKEALSDDVTKGLSKYL KGPYLQMNTETLSQVNPERMFIMTNKASSNEPSLKELEKDPVWKKLNAVKNQRVDILDRD LWARSRGLISSEEMAKELVELSKKDSKKDNK >gi|224999836|gb|ACJC01000164.1| GENE 102 82764 - 83795 948 343 aa, chain + ## HITS:1 COG:SA1978 KEGG:ns NR:ns ## COG: SA1978 COG0609 # Protein_GI_number: 15927756 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 1 343 1 343 343 420 72.0 1e-117 MTIVNKDSQSAIEQKKKKRTTLTFIVGVCLLFISVYLNLAIGSSKIQLNDILSYVTGHTN TKATFLIHNVRMPRMLASLIIGGALAIAGLLMQAITKNPLASPQIFGVNAGASFVIVLIT VLIPSLGSYSTILAIIGAFLGGFTVYTLSGSTKSLTPIKLALAGMAIHLFFSSMTQGIII LNEDSNDTVMFWLVGSLAGIKWQQIIFILPFLLLAIFVTIFMGRQLTILELGDDIARGLG QRTEIVRMIVGILVVVLAGVSVSIAGPIGFVGLIVPHIVKRYINKNYILMIPLTFIFGAT LLLISDVLCRLITYPFESPVGIVTSFVGAFYFLFITVRGVNRI >gi|224999836|gb|ACJC01000164.1| GENE 103 83792 - 84757 884 321 aa, chain + ## HITS:1 COG:SA1977 KEGG:ns NR:ns ## COG: SA1977 COG0609 # Protein_GI_number: 15927755 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 1 321 1 321 322 379 76.0 1e-105 MIKQNLKMRYTIVLLLLIFSTIFSLCIGSVMINPIHAVTGFFLHNDFILNEYRIPRTLLG ILIGSSLAISGSVIQGVIRNPLASPDVIGITKGASLAAVIIIMIFPSAPLFVLPLGSFIG ALTISIILSVLISKFDVKGSKLALIGLAIGAICTAIVQFLLIRNPLDANNALLWLTGSLY GHNIASFYSLLPWFIITVPIVLLLGYQLDILNLGDHVAIALGARVKILKMTLLVLAVMLA GASIAVVGGISFLGLIAPHIARQLVGHKNIHVIIMSGLVGAILLTFGDGLARGIQPPLDI PVGVVIAIIGAPYFLFLLRKM >gi|224999836|gb|ACJC01000164.1| GENE 104 85056 - 86429 1227 457 aa, chain + ## HITS:1 COG:SA1976 KEGG:ns NR:ns ## COG: SA1976 COG3314 # Protein_GI_number: 15927754 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 456 1 456 456 646 80.0 0 MNEYKKVDIVRGRIKFITMSLLGIILFLIPIPVVQDGQQQTTLPIAFLAGLLKDWLGGIM PILIVTIITVSGILTILCSTIFKNKLNPQGLMSSAFNVKIGWLVLRVLAVFFSWLTFLNI GPEMIKSEDTGGLVFSSLLPTLVAVFLFAAIFLPLLMEYGLLELLGPIFRPIMRPLFTLP GRSTVDNLASFIGDGTVGVLITSRQYGEGYYSRREATVISTTFSVVSITFAIVIAETIRM QDQFFYFYLTVVISCLIAAMIMPRIWPLKNIPDEYAKEVSEEARKEQLPEGKTALKYGFD LATEVGIKSPGFKEFLISGFKTVVDMWFVILPVVMSIGTIATIIANYTPVFEIIGKPFVP VLELLQIPEAHEASQTILIGFADMFLPSILIEGVQNDVTRFVIGALSISQLVYLSEVGGV ILGSKIPVSISKLFMIFLIRTIITLPIIALLAHLFIG >gi|224999836|gb|ACJC01000164.1| GENE 105 86607 - 86921 435 104 aa, chain - ## HITS:1 COG:SA0160 KEGG:ns NR:ns ## COG: SA0160 COG2329 # Protein_GI_number: 15925869 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Staphylococcus aureus N315 # 1 97 1 102 108 60 33.0 6e-10 MFVVTNRITVKKGYAKQMAPNFTKGGPIESLKGFEGIEVWQIDKDDYSEDMYVNSWWETE EDFKNWVNSDVFKQAHKNTGKSEDLPVIKSEIVKSNVLSSLNRR >gi|224999836|gb|ACJC01000164.1| GENE 106 87071 - 87331 452 86 aa, chain - ## HITS:1 COG:no KEGG:SERP1772 NR:ns ## KEGG: SERP1772 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 86 1 86 86 141 100.0 7e-33 MAMTVKKNDNEVRIQWRVADIKIPNNEIKNVTQDQDIHAVPEENGKEISRIGSTFGKTNR VLIDTDQHLYIIYTQNDQKVYNELTK >gi|224999836|gb|ACJC01000164.1| GENE 107 87507 - 88016 372 169 aa, chain + ## HITS:1 COG:SA1975 KEGG:ns NR:ns ## COG: SA1975 COG1988 # Protein_GI_number: 15927752 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Staphylococcus aureus N315 # 1 169 1 169 171 222 71.0 3e-58 MTGKTHASCGFLVGAITTQYFHTDIFTSISVIVLSVISSILPDICHTQSKIGRRFRLTSF FVRILFGHRTFTHSLLFIIGISFLLYFIQTPMYYMVAIVIGMFSHVILDILTPRGVKLLY PLPFNIVSPIHFKTGGLVDVSLATALSVGAIYTLFQPYLNTMMHYWLIK >gi|224999836|gb|ACJC01000164.1| GENE 108 88071 - 89261 1209 396 aa, chain + ## HITS:1 COG:SA1974 KEGG:ns NR:ns ## COG: SA1974 COG4284 # Protein_GI_number: 15927751 # Func_class: G Carbohydrate transport and metabolism # Function: UDP-glucose pyrophosphorylase # Organism: Staphylococcus aureus N315 # 1 395 1 395 395 591 77.0 1e-169 MLDKNQLEKYNQEHLYEYEKLMSSNEKNALDEKLNQLNLAEIQDLYQDLYVNRKTIDDVS SVSEVKYEVKSRLNEEQRHTYEQKGYEAIRNGEFAVLLMAGGQGTRLGYKGPKGSFEIEG TSLFELQARQLIRLKEETGHTINWYIMTSDINHKDTIEYFKQHKYFNYDANHIHFFKQDN IVALSEEGKLVLNRDGHIMETPNGNGGVFKSLKKAGYLDKMQQDHVKYIFLNNIDNVLVK VLDPLFAGFTVTQSKDITSKTIQPKDSESVGRLVNVDCKDTVLEYSELDTDIANQFNNAN IGIHAFKLGFITSAVDRELPYHLAIKQLKQLDENFGVVERPTLKFELFYFDIFRYGTSFV TLQVPREEEFSPLKNKEGKDSVHTAIEDLKRMDLIN >gi|224999836|gb|ACJC01000164.1| GENE 109 89276 - 89959 552 227 aa, chain + ## HITS:1 COG:SA1973 KEGG:ns NR:ns ## COG: SA1973 COG1272 # Protein_GI_number: 15927750 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Staphylococcus aureus N315 # 1 227 2 228 228 306 83.0 2e-83 MSQSSKRKNDSVVETFKDIIPLTFGEEIGNAASHGAAALLTLFILPYAAVHSFNNGGTLE SISVSIYVISIFMMFISSTIYHSMQNNTSHKYILRIIDHSMIYVAISGTYTPVLLSVVGG WLGWLVTILLWGTTLWGILYKSIATKVNHRLSLIVYLVMGWVGIIFLPIIIMRTSWWFIF FIFLGGLSYTIGAWFYAQKNKPYFHMIWHIFIVLASLLHMIGIFYFM >gi|224999836|gb|ACJC01000164.1| GENE 110 90199 - 91536 1007 445 aa, chain + ## HITS:1 COG:SA1972 KEGG:ns NR:ns ## COG: SA1972 COG0477 # Protein_GI_number: 15927749 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 445 1 445 447 502 73.0 1e-142 MNLKSIITVMALILIMFMAAIETSIISLALPTIKNSLNAGNLVSLVFTVYFIALVIANPI VGELMSRFKIINIAVLGVSLFALGSLMSGLSQTFTFLIISRIVQGFGAGVMMSLSQIVPK LAFEIPLRYKIMGIVGSVWGISSIIGPLLGGAILEFASWHWLFYINIPIAILAIILVFMT FHFPDETQVQQSRFDIKGLIIFYIFIALLMFGLLNQHHIIFNIFSIILALVVLWMLFKVE NSFEQPFLPTKEFNISIVLVFITDLLIAITLMGYNLYIPVYLQEKLGLSPLQSGFVIFPL SVAWITLNFNLAKIEAHFTRKTLYICSFFVLLVCSLMIIFGLKLPLLIAFAVIFAGLSFG YIYTKDSVIVQEETSPKNMKKMMSFYALTKNLGSSVGSTIMGYMYALNVGLFGSNLHNVL GLVSIISVCLIVMWMTLFKSNPIQS >gi|224999836|gb|ACJC01000164.1| GENE 111 91730 - 92197 390 155 aa, chain + ## HITS:1 COG:no KEGG:SERP1767 NR:ns ## KEGG: SERP1767 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 155 2 156 156 219 98.0 3e-56 MKFLKNKSYHLLVTLIVLTIFIISGAIFLTFLGFGLYGLSRILIYLHLGDFSYNKGFYDN LIYYGSYIVLGYFTLFSIEHLMDYFKKNLPKNPYFQGINFHLISYIVTTIMFYFIVHIHY VHVNIHFWVIMIIIGFLFGCKEVFYPESKNLNNKK >gi|224999836|gb|ACJC01000164.1| GENE 112 92467 - 93906 1257 479 aa, chain + ## HITS:1 COG:SA1970 KEGG:ns NR:ns ## COG: SA1970 COG0477 # Protein_GI_number: 15927747 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 478 1 479 480 608 76.0 1e-174 MASYELSKTKRNLIVSVMLISAFVAILNQTLLNTALPHIMRELNINENTSQWLITGFMLV NGVMIPLTAYLMDKVKTRPLYLGAMGTFLIGSIVAAIAPNFGVLMFARVIQAVGAGILMP LMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTFTGLIIDNASWRVPFIVIVGIALVT FIFGFVSISSYNTTKETKLDKKSVIYSTLGFGLMLYAFSSAGNLGFSNPIALCSLLISLI IIGIFVKRQITISNPLLNLKIFNNKIFCFSTITSMIIMLSMVGPALLIPLYVQNALGLSA LLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIFTGFILLISCTFLLCFLKVDTSYTYL IIIYAIRMFAVSLLMMPINTTGINALKTENISHGTAIMNFGRVMAGSLGTALMVTFMSIG AQWVVSSSNHASKEMIQRQSVAAGVDVSFALVTVFVIIAFVLALFIKEPNHSTHNSRKV >gi|224999836|gb|ACJC01000164.1| GENE 113 94053 - 95120 1232 355 aa, chain + ## HITS:1 COG:SA1969 KEGG:ns NR:ns ## COG: SA1969 COG0489 # Protein_GI_number: 15927746 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Staphylococcus aureus N315 # 1 354 1 354 354 565 84.0 1e-161 MLTVNQVKEIVGALKDPIIDVPLKESEGIVDVSIKDNINHVSVKVAMAQLGGQPQLDLQM AIVKALKENGANTVGIRFEELPGEVVERYIGKGSEKPKTIEELLSQNNPVEFISIASGKG GVGKSTVAVNLAVALAREGKKVGLVDADIYGFSVPDMMGIDERPGIDGKEIIPVERHGVK VISMAFFVEENAPVIWRGPMLGKMLTNFFTEVQWGELDYLLLDLPPGTGDVALDVHSMLP SSKEIIVTTPHPTAAFVAARAGAMAKHTEHTILGVIENMSYFESKETGKKEYVFGKGGGK KLSDELETQLFAELPLEQPTWNPNDFSPSIYQSDDRLGELYNSIARKVIASTQKQ Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:08 2011 Seq name: gi|224999835|gb|ACJC01000165.1| Staphylococcus epidermidis W23144 contig00209, whole genome shotgun sequence Length of sequence - 306 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:08 2011 Seq name: gi|224999834|gb|ACJC01000166.1| Staphylococcus epidermidis W23144 contig00212, whole genome shotgun sequence Length of sequence - 791 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 775 701 ## COG3942 Surface antigen Predicted protein(s) >gi|224999834|gb|ACJC01000166.1| GENE 1 2 - 775 701 257 aa, chain - ## HITS:1 COG:SA2093 KEGG:ns NR:ns ## COG: SA2093 COG3942 # Protein_GI_number: 15927879 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 1 257 1 267 267 199 68.0 3e-51 MKKIATATIATAGIATFAFAHHDAQAAEQNNNGYNPNDPYSYSYTYTIDAEGNYHYTWKG NWSPDRVNTSYNYNSYNNYNNYGYNNYSNYNNYSNYNNYNNYQSNNTQSQRTTQPTGGLG ASYSTSSSNVHVTTTSAPSSNGVSLSNARSASGNLYTSGQCTYYVFDRVGGKIGSTWGNA NNWANAAARSGYTVNNSPAKGAILQTSQGAYGHVAYVEGVNSNGSIRVSEMNYGHGAGVV TSRTISASQAASYNYIH Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:09 2011 Seq name: gi|224999833|gb|ACJC01000167.1| Staphylococcus epidermidis W23144 contig00214, whole genome shotgun sequence Length of sequence - 701 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:09 2011 Seq name: gi|224999832|gb|ACJC01000168.1| Staphylococcus epidermidis W23144 contig00215, whole genome shotgun sequence Length of sequence - 447 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 437 396 ## COG2367 Beta-lactamase class A Predicted protein(s) >gi|224999832|gb|ACJC01000168.1| GENE 1 3 - 437 396 144 aa, chain + ## HITS:1 COG:SAP010 KEGG:ns NR:ns ## COG: SAP010 COG2367 # Protein_GI_number: 16119210 # Func_class: V Defense mechanisms # Function: Beta-lactamase class A # Organism: Staphylococcus aureus N315 # 1 144 138 281 281 232 95.0 2e-61 KVKQRLKELGDKVTNPVRYEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGKLSKENKKF LLDLMLNNKSGDTLIKDGVSKDCKVADKSGQAITYASRNDVAFVYPKGQSEPIVLVIFTN KDNKSDKPNDKLISETAKSVMKEF Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:10 2011 Seq name: gi|224999831|gb|ACJC01000169.1| Staphylococcus epidermidis W23144 contig00217, whole genome shotgun sequence Length of sequence - 387 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 25 - 84 1.7 1 1 Tu 1 . + CDS 106 - 354 377 ## COG4495 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|224999831|gb|ACJC01000169.1| GENE 1 106 - 354 377 82 aa, chain + ## HITS:1 COG:SA2371 KEGG:ns NR:ns ## COG: SA2371 COG4495 # Protein_GI_number: 15928164 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 78 18 95 98 115 76.0 3e-26 MIINRGPIVDIDNQKYIFDYSACNYPVGVVEDQIYYFNEENIDKVVFEGYSDQDETRFQE LFKEMMGNLDEDIKRGTVQQKR Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:10 2011 Seq name: gi|224999830|gb|ACJC01000170.1| Staphylococcus epidermidis W23144 contig00218, whole genome shotgun sequence Length of sequence - 587 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 69 - 585 199 ## COG2801 Transposase and inactivated derivatives Predicted protein(s) >gi|224999830|gb|ACJC01000170.1| GENE 1 69 - 585 199 172 aa, chain + ## HITS:1 COG:SA0062 KEGG:ns NR:ns ## COG: SA0062 COG2801 # Protein_GI_number: 15925769 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 71 172 1 102 125 181 94.0 4e-46 MMQKHHLNCRVRPKKTTRIGKPYYKTDNLLQRQFKASCPMEVLTTDITYLPFGHSMLYLS SIMDIYNGEIVAYKIDDKQDQSLVNDTLNQIDIPEGCILHSDQGSVYTSYAYYQLCEEKG IIRSMSRKGTPADNAPIESFHSSLKSETFYINNELNRSNHIVIDIVEKYIKN Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:11 2011 Seq name: gi|224999829|gb|ACJC01000171.1| Staphylococcus epidermidis W23144 contig00220, whole genome shotgun sequence Length of sequence - 1186 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1125 936 ## COG3666 Transposase and inactivated derivatives Predicted protein(s) >gi|224999829|gb|ACJC01000171.1| GENE 1 3 - 1125 936 374 aa, chain - ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 374 58 430 522 377 53.0 1e-104 MLKVILYAYTQSVFSGRKIEKMLNDSIRMMWLSQNQKPSYKTINRFRVNPKVDALLESLF IQFYSQCVKQNLIDDKAIFIDGTKIEANANRYTFVWKKSIQNHESKMNEDSKALYHELVT NKIIPEIKKDHDNELTKEEIDLIGSHLDKEIEDLNQHINNEKCTKTRKQIRLKRTKIKKY KKQINDYFERKYRYEFQKSILKDRNSYSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATN SQFVLSYNVYQNPTDTRTMIPFLNSIQETYGHLPEYIVADAGYGSESNYKAIIDDFNRTP LITYGMFIKDKTKKYKSDIFNTQNWNYDEINDEFICPNNKRLGFKRYAYRHDKYGYKRDF KLYECDDCSECPLK Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:12 2011 Seq name: gi|224999828|gb|ACJC01000172.1| Staphylococcus epidermidis W23144 contig00221, whole genome shotgun sequence Length of sequence - 1272 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 309 - 368 7.7 1 1 Tu 1 . + CDS 395 - 1271 1152 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases Predicted protein(s) >gi|224999828|gb|ACJC01000172.1| GENE 1 395 - 1271 1152 292 aa, chain + ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 291 1 291 454 315 55.0 6e-86 MKYIVVGTSHSGYEVIQTLLKEDENADIQVFESADQPSFLSCGIQSYLEDISSSLDDLHY ASVDSYKAQGVNIHTNSTVTNLDTDNKTVTVEHQGQTSTYSYDKLFLSPGGKPVTPPVDG IEKYKHVLFMRGRDWANQIKERMKDAKKAVVVGGGYIGIEAAEAFAKAGIDTTIVDVADR ILNTYLDKEFTDVLETNAQQHGLHFKGGETVQSLSGNQNSEVTTVVTDKNEYDADTVLFA VGVEPATEWLKDKIDLGKKGIININHQQQTSAKDVYAGGDATLVPFAPVSEN Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:13 2011 Seq name: gi|224999827|gb|ACJC01000173.1| Staphylococcus epidermidis W23144 contig00222, whole genome shotgun sequence Length of sequence - 595 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 462 380 ## COG1943 Transposase and inactivated derivatives - Prom 505 - 564 4.7 Predicted protein(s) >gi|224999827|gb|ACJC01000173.1| GENE 1 3 - 462 380 153 aa, chain - ## HITS:1 COG:CAC3531 KEGG:ns NR:ns ## COG: CAC3531 COG1943 # Protein_GI_number: 15896768 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Clostridium acetobutylicum # 4 152 2 150 157 266 82.0 1e-71 MSSDTNSLAHTKWNCKYHIVFAPKYRRQVIYGKIKRDIGVILRQLCERKGVEIIEAEACK DHIHMLVSIPPKLGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRKFWCKGFYVDTVGRNK KVIENYIRNQLQEDIVADQISMEEYLDPFTGEE Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:13 2011 Seq name: gi|224999826|gb|ACJC01000174.1| Staphylococcus epidermidis W23144 contig00223, whole genome shotgun sequence Length of sequence - 1216 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 1, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 518 - 577 7.8 1 1 Op 1 . + CDS 605 - 991 288 ## SLGD_00550 hypothetical protein 2 1 Op 2 . + CDS 998 - 1214 114 ## SERP0591 hypothetical protein Predicted protein(s) >gi|224999826|gb|ACJC01000174.1| GENE 1 605 - 991 288 128 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00550 NR:ns ## KEGG: SLGD_00550 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 2 128 377 485 485 80 38.0 1e-14 MATTALLSSNPIDWAILGGIAAGTLITAVSDLAYQNNWFGTKDGVDWAGHQIDKRIDKYI DFKTKEITLEAKGALYMKNKLQHGSQEVVERVENGANYFSNKAQKVEKKVGEAVNNVKKV VNPMKWSW >gi|224999826|gb|ACJC01000174.1| GENE 2 998 - 1214 114 72 aa, chain + ## HITS:1 COG:no KEGG:SERP0591 NR:ns ## KEGG: SERP0591 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 72 1 72 207 132 90.0 3e-30 MNNIYMIYKNPRYKIIQKDNRYLMVDLEQNWYSYLCPMLNWFIPIKFTELTYQEFNNINI FHNGGQKSQGML Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:18 2011 Seq name: gi|224999825|gb|ACJC01000175.1| Staphylococcus epidermidis W23144 contig00224, whole genome shotgun sequence Length of sequence - 341 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:19 2011 Seq name: gi|224999824|gb|ACJC01000176.1| Staphylococcus epidermidis W23144 contig00225, whole genome shotgun sequence Length of sequence - 2010 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 16 - 786 1012 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - Prom 857 - 916 7.4 - Term 1032 - 1077 -0.0 2 2 Tu 1 . - CDS 1150 - 1947 768 ## COG0477 Permeases of the major facilitator superfamily Predicted protein(s) >gi|224999824|gb|ACJC01000176.1| GENE 1 16 - 786 1012 256 aa, chain - ## HITS:1 COG:SA0869 KEGG:ns NR:ns ## COG: SA0869 COG0623 # Protein_GI_number: 15926599 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 447 91.0 1e-126 MINLENKTFVIMGIANKRSIGFGVAKVLDQLGAKLVFTYRKDRSRKELEKLLEQLNQEEP KLYQIDVQKDEDVVNGFAKIGEEVGNIDGVYHSIAFANIEDLRGRFSETSREGFLLAQDI SSYSLTIVAHEAKKIMPNGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLAYDLGP DNIRVNAISAGPIRTLSAKGVGGCNTILKEIEERAPLRRNVDQEEVGKTAAYLLSDFSSG VTGENIHVDSGFHAIK >gi|224999824|gb|ACJC01000176.1| GENE 2 1150 - 1947 768 265 aa, chain - ## HITS:1 COG:PA1282 KEGG:ns NR:ns ## COG: PA1282 COG0477 # Protein_GI_number: 15596479 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Pseudomonas aeruginosa # 2 188 238 424 501 100 34.0 3e-21 MIVIFVKRNLSSSDPMLDVRLFKKRSFSAGTIAAFMTMFAMASVLLLASQWLQVVEELSP FKAGLYLLPMAIGDMVFAPIAPGLAARFGPKIVLPSGIGIAAIGMFIMYFFGHPLSYSTM ALALILVGAGMASLAVASALIMLETPTSKAGNAAAVEESMYDLGNVFGVAVLGSLSSMLY RVFLDISSFSSKGIVGDLAHVAEESVVGAVEVAKATGIKQLANEAVTSFNDAFVATALVG GIIMIIISIVVYLLIPKSLDITKQK Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:20 2011 Seq name: gi|224999823|gb|ACJC01000177.1| Staphylococcus epidermidis W23144 contig00226, whole genome shotgun sequence Length of sequence - 1757 bp Number of predicted genes - 2, with homology - 2 Number of transcription units - 2, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 96 - 155 8.0 1 1 Tu 1 . + CDS 227 - 793 291 ## SAVP031 transcriptional regulator + Term 876 - 925 9.0 - Term 870 - 903 5.4 2 2 Tu 1 . - CDS 998 - 1606 832 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 1693 - 1752 6.7 Predicted protein(s) >gi|224999823|gb|ACJC01000177.1| GENE 1 227 - 793 291 188 aa, chain + ## HITS:1 COG:no KEGG:SAVP031 NR:ns ## KEGG: SAVP031 # Name: qacR # Def: transcriptional regulator # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 188 1 188 188 310 99.0 2e-83 MNLKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESK WQEQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFCTEYYKTNSINEKMNKLE NKYIDAYHVIFKEGNLNGEWCINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQ IFLNGLSK >gi|224999823|gb|ACJC01000177.1| GENE 2 998 - 1606 832 202 aa, chain - ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 197 1 197 199 270 71.0 1e-72 MIIGYARVSSVDQNLERQLDNLKTFGVEKIFTEKQSGKSVENRPVFQEALNFVRMGDRFV VESIDRLGRNYDEVINTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIVQILAMV SEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQKRIIYHRVVEMLEEGKAISK IAKEVNITRQTVYRIKNGKGLS Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:23 2011 Seq name: gi|224999822|gb|ACJC01000178.1| Staphylococcus epidermidis W23144 contig00227, whole genome shotgun sequence Length of sequence - 411 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 39 - 359 256 ## COG3666 Transposase and inactivated derivatives Predicted protein(s) >gi|224999822|gb|ACJC01000178.1| GENE 1 39 - 359 256 106 aa, chain - ## HITS:1 COG:SA1603 KEGG:ns NR:ns ## COG: SA1603 COG3666 # Protein_GI_number: 15927359 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 25 102 1 78 116 119 75.0 1e-27 MYKDYNMTQLTLLKETSVLIPTHDMLQYVNDIVETIPKTEFDEFRHHRGATPYHLKMMLK VVLYAYTQFVFSGRKIENLLNVSIRMMWLSQNQKFSFKTINRCKNK Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:24 2011 Seq name: gi|224999821|gb|ACJC01000179.1| Staphylococcus epidermidis W23144 contig00230, whole genome shotgun sequence Length of sequence - 615 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 615 500 ## USA300HOU_0076 transposase Predicted protein(s) >gi|224999821|gb|ACJC01000179.1| GENE 1 3 - 615 500 204 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_0076 NR:ns ## KEGG: USA300HOU_0076 # Name: not_defined # Def: transposase # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 27 204 1 178 337 347 98.0 1e-94 NYLLKYLNDLDHPQLIFESTGIYSRGMERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQ ADAHKLACLGPTLKQTGSLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPG LERLFSSRYSIIALNIAEIFTHPDMVLDIDKDVLITHIFNSTNKGMSMDKATKYALQLRV IAQESYPNVDRHSFLVEKLRLLIQ Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:27 2011 Seq name: gi|224999820|gb|ACJC01000180.1| Staphylococcus epidermidis W23144 contig00231, whole genome shotgun sequence Length of sequence - 314 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:28 2011 Seq name: gi|224999819|gb|ACJC01000181.1| Staphylococcus epidermidis W23144 contig00233, whole genome shotgun sequence Length of sequence - 259 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 258 240 ## SE0162 transposase Predicted protein(s) >gi|224999819|gb|ACJC01000181.1| GENE 1 3 - 258 240 85 aa, chain - ## HITS:1 COG:no KEGG:SE0162 NR:ns ## KEGG: SE0162 # Name: not_defined # Def: transposase # Organism: S.epidermidis # Pathway: not_defined # 1 85 11 95 104 122 100.0 6e-27 KYKAVEMKAAGFSTKEIMKELNIRNRTQVKTWWRWYRNGESYRFSQQVGKQYTYGKGLEE LSEVEQLKLENKRKDIELDILKKYK Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:30 2011 Seq name: gi|224999818|gb|ACJC01000182.1| Staphylococcus epidermidis W23144 contig00235, whole genome shotgun sequence Length of sequence - 1604 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 85 - 1470 1666 ## COG0114 Fumarase - Prom 1500 - 1559 4.9 Predicted protein(s) >gi|224999818|gb|ACJC01000182.1| GENE 1 85 - 1470 1666 461 aa, chain - ## HITS:1 COG:SA1669 KEGG:ns NR:ns ## COG: SA1669 COG0114 # Protein_GI_number: 15927425 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Staphylococcus aureus N315 # 1 461 1 461 461 834 88.0 0 MSVRIEHDTFGEIEVPEDKYWGAQTERSKRNFPVGKEHMPIEVIYGFAQLKRGAALANHE LGKLSDEKKNAIVYACDRILNGELDDHFPLVVWQTGSGTQSNMNVNEVVSYVANEYLKKH GSKEAIHPNDDVNKSQSSNDTFPTAMHVALFHEVETKLEPALNHLRQTFKEKEDQYQSII KIGRTHLQDATPIKLGQEISGWRYMLEKCEQLLSESKKHILNLAIGGTAVGTGINAHPEF GHKVAKYISKNTGYAFVSSENKFHALTSHDEIVQLHGTLKALATDLMKIANDIRWLASGP RAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVMGNDTTVGIASSQGNFELNVFK PVIMHNTLQSIYLLADGMNTFNKNCAIGIQPIEENINNYLNQSLMLVTALNPHIGYEKAA QIAKKAHKEGLTLKESAIESGYVTESQFEEWIKPEDMVDPH Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:31 2011 Seq name: gi|224999817|gb|ACJC01000183.1| Staphylococcus epidermidis W23144 contig00236, whole genome shotgun sequence Length of sequence - 1048 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 137 - 192 -0.1 1 1 Tu 1 . - CDS 254 - 844 556 ## SE2152 hypothetical protein - Prom 950 - 1009 6.5 Predicted protein(s) >gi|224999817|gb|ACJC01000183.1| GENE 1 254 - 844 556 196 aa, chain - ## HITS:1 COG:no KEGG:SE2152 NR:ns ## KEGG: SE2152 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 196 1 196 196 337 96.0 2e-91 MKKISLIATTVLTGLLLFPSVNDTTTHAAEVTSQDAQAVAIQAMKNSGGNPDLQNFKKVK DKGDYFTIDINNKSGAGVGTYKVYKNGVVLYKSGDYGEYSQLNTPQCYVAQDIATTSSQV KQHSTQQTQAVDSTRELNSYYVGQVQSSDLPQQSSSDMLPNTGMKDKNFNTNGIISLFLL TAGFIALYHQPLRKMT Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:34 2011 Seq name: gi|224999816|gb|ACJC01000184.1| Staphylococcus epidermidis W23144 contig00237, whole genome shotgun sequence Length of sequence - 566 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 554 485 ## COG4716 Myosin-crossreactive antigen Predicted protein(s) >gi|224999816|gb|ACJC01000184.1| GENE 1 2 - 554 485 184 aa, chain - ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 184 70 253 591 332 82.0 2e-91 MEHHGFVVRGGREMENHFECLWDLFRSIPSLEQPDASVLDEFYWLNKEDPNYSKCRAINS GGKRIDTDGDFTLSKKAIKEILSLCMKKEEDLEDVKISEVFTEDFLNSNFWLYWKTMFAF EPWHSAMEMRRYLMRFVHHIGGLADFSALKFTKYNQYESLVLPMVEYLKSHGVHFEYGVQ VDNI Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:35 2011 Seq name: gi|224999815|gb|ACJC01000185.1| Staphylococcus epidermidis W23144 contig00238, whole genome shotgun sequence Length of sequence - 356 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 88 - 355 164 ## SLGD_00645 hypothetical protein Predicted protein(s) >gi|224999815|gb|ACJC01000185.1| GENE 1 88 - 355 164 89 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00645 NR:ns ## KEGG: SLGD_00645 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 89 103 191 211 111 77.0 7e-24 MFLIGFVAVITLRLSIRKKLNHPAFNKKSKQKVRLIPVFKNMIIVVFNYFILIYLITGLF DMMVIENIQNIWIYICCLGIVLAFLFMNI Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:37 2011 Seq name: gi|224999814|gb|ACJC01000186.1| Staphylococcus epidermidis W23144 contig00239, whole genome shotgun sequence Length of sequence - 437 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 102 - 347 157 ## COG3666 Transposase and inactivated derivatives - Prom 375 - 434 7.4 Predicted protein(s) >gi|224999814|gb|ACJC01000186.1| GENE 1 102 - 347 157 81 aa, chain - ## HITS:1 COG:SA1605 KEGG:ns NR:ns ## COG: SA1605 COG3666 # Protein_GI_number: 15927361 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 35 78 100 143 259 78 72.0 3e-15 MHKDYNMTQLTLPLETSVLIPTNDIVETIPETEFDDFICPNNQRPGFKRYAYRHDKYGFK RDFKINKCDDCSECPLKHTNV Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:38 2011 Seq name: gi|224999813|gb|ACJC01000187.1| Staphylococcus epidermidis W23144 contig00241, whole genome shotgun sequence Length of sequence - 376 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:38 2011 Seq name: gi|224999812|gb|ACJC01000188.1| Staphylococcus epidermidis W23144 contig00242, whole genome shotgun sequence Length of sequence - 377 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:38 2011 Seq name: gi|224999811|gb|ACJC01000189.1| Staphylococcus epidermidis W23144 contig00245, whole genome shotgun sequence Length of sequence - 479 bp Number of predicted genes - 0 Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:40 2011 Seq name: gi|224999810|gb|ACJC01000190.1| Staphylococcus epidermidis W23144 contig00248, whole genome shotgun sequence Length of sequence - 3054 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - LSU_RRNA 95 - 2927 99.0 # AE015929 [R:1594723..1597555] # 23S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:44 2011 Seq name: gi|224999809|gb|ACJC01000191.1| Staphylococcus epidermidis W23144 contig00249, whole genome shotgun sequence Length of sequence - 1692 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 35 - 1588 99.0 # CP000029 [D:105734..107287] # 16S ribosomal RNA # Staphylococcus epidermidis RP62A # Bacteria; Firmicutes; Bacillales; Staphylococcus. Prediction of potential genes in microbial genomes Time: Sun May 29 08:13:44 2011 Seq name: gi|224999808|gb|ACJC01000192.1| Staphylococcus epidermidis W23144 contig00250, whole genome shotgun sequence Length of sequence - 550 bp Number of predicted genes - 0