Prediction of potential genes in microbial genomes Time: Sun May 29 08:58:33 2011 Seq name: gi|312979664|gb|ACRM01000001.1| Staphylococcus hominis subsp. hominis C80 cont1.1, whole genome shotgun sequence Length of sequence - 3998 bp Number of predicted genes - 6, with homology - 4 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 273 - 320 14.3 1 1 Tu 1 . - CDS 395 - 1462 1440 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase + Prom 1533 - 1592 7.5 2 2 Tu 1 . + CDS 1723 - 1869 183 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component + Term 2045 - 2085 10.6 - Term 2008 - 2048 -0.2 3 3 Tu 1 . - CDS 2098 - 2199 124 ## - Prom 2439 - 2498 9.3 4 4 Op 1 . - CDS 3029 - 3193 128 ## gi|228475397|ref|ZP_04060116.1| conserved hypothetical protein - Prom 3294 - 3353 7.5 5 4 Op 2 . - CDS 3382 - 3459 72 ## - Prom 3533 - 3592 9.9 6 5 Tu 1 . + CDS 3565 - 3997 391 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979664|gb|ACRM01000001.1| GENE 1 395 - 1462 1440 355 aa, chain - ## HITS:1 COG:BS_yqiT KEGG:ns NR:ns ## COG: BS_yqiT COG0334 # Protein_GI_number: 16079464 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Bacillus subtilis # 2 349 3 348 364 409 59.0 1e-114 MIFETMEQKDYEQIVFCQDKATGLKAIICIHDTTLGPALGGCRVRNDYASEQEAIEDAMN LARGMTYKNAAAGLDLGGGKTVVMGAPSKENEEAFYRALGRYINTLNGRYYTAEDVGTSE YIMNLIYKETPYVCGTSKSFGSAGNPSPMTAYGIYIAMKRTAKEKFDDESLEGKTVAVQG VGHVSYELCRLLSKDGVNLIVTDINKDNAQRAVDDFDAQFVEPDDIFSVEADIFAPCALG GILNDDTIPQLKVKAVCGSANNQLKDEETHSKMLEDKNILYAPDYIVNSGGVINTADELN GYNEDRAKENIEGIDQVLKHIFDISREQNETPLEASQHFAEKRMEQMSRIHDIRK >gi|312979664|gb|ACRM01000001.1| GENE 2 1723 - 1869 183 48 aa, chain + ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 48 209 256 256 57 72.0 6e-09 MMNIMVQIIDKSFKEITKLELHELFIGNIVYIFIFLVLVVFVFRKKNI >gi|312979664|gb|ACRM01000001.1| GENE 3 2098 - 2199 124 33 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVEALVHITTTVISGCIVALFTHWLRTRNNKKK >gi|312979664|gb|ACRM01000001.1| GENE 4 3029 - 3193 128 54 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475397|ref|ZP_04060116.1| ## NR: gi|228475397|ref|ZP_04060116.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 54 1 54 54 65 100.0 1e-09 MKWILFSIQMILAIFLVFFAYKQMNQNYLDSWFGIYVVLFMIFVYWNAKRYHNY >gi|312979664|gb|ACRM01000001.1| GENE 5 3382 - 3459 72 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSIWFFIVIAVLGSIFILWRLMFRG >gi|312979664|gb|ACRM01000001.1| GENE 6 3565 - 3997 391 144 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 144 1 144 224 221 90.0 4e-58 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTIYRWVQEYAPILYQ IWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDTEGHTLDIWLRKQRDNHSAYAFIKRL IKQFGKPQKGSYRSGTFNEAAMAK Prediction of potential genes in microbial genomes Time: Sun May 29 08:58:45 2011 Seq name: gi|312979663|gb|ACRM01000002.1| Staphylococcus hominis subsp. hominis C80 cont1.2, whole genome shotgun sequence Length of sequence - 780 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 57 - 731 520 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979663|gb|ACRM01000002.1| GENE 1 57 - 731 520 224 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 394 97.0 1e-109 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTIYRWVQEYAPILYQ IWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDTEGHTLDIWLRKQRDNHSAYAFIKRL IKQFGKPQKVVTDQAPSTKAAMAKIIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRY QSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS Prediction of potential genes in microbial genomes Time: Sun May 29 08:59:13 2011 Seq name: gi|312979662|gb|ACRM01000003.1| Staphylococcus hominis subsp. hominis C80 cont1.3, whole genome shotgun sequence Length of sequence - 90459 bp Number of predicted genes - 83, with homology - 82 Number of transcription units - 43, operones - 20 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 1 - 350 99.0 # EU373358 [D:1..1518] # 16S ribosomal RNA # Staphylococcus sp. HNL18 # Bacteria; Firmicutes; Bacillales; Staphylococcus. 1 1 Op 1 23/0.000 - CDS 883 - 1479 737 ## COG0353 Recombinational DNA repair protein (RecF pathway) 2 1 Op 2 30/0.000 - CDS 1487 - 1804 195 ## PROTEIN SUPPORTED gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 - Prom 1850 - 1909 9.5 3 1 Op 3 1/0.300 - CDS 1931 - 3640 1985 ## COG2812 DNA polymerase III, gamma/tau subunits 4 1 Op 4 1/0.300 - CDS 3713 - 4231 509 ## COG3153 Predicted acetyltransferase - Prom 4450 - 4509 11.4 5 2 Op 1 3/0.100 - CDS 4910 - 5635 566 ## COG2188 Transcriptional regulators 6 2 Op 2 9/0.000 - CDS 5658 - 7295 1441 ## COG0366 Glycosidases 7 2 Op 3 . - CDS 7374 - 8816 1967 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific - Prom 8842 - 8901 8.6 + Prom 8859 - 8918 7.3 8 3 Tu 1 . + CDS 8992 - 9090 125 ## - TRNA 8993 - 9085 74.1 # Ser TGA 0 0 - Term 8912 - 8956 11.8 9 4 Op 1 21/0.000 - CDS 9144 - 10607 1689 ## COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductases 10 4 Op 2 . - CDS 10626 - 15134 5366 ## COG0069 Glutamate synthase domain 2 - Prom 15179 - 15238 7.6 + Prom 15141 - 15200 8.6 11 5 Tu 1 . + CDS 15286 - 16182 1052 ## COG0583 Transcriptional regulator + Prom 16193 - 16252 8.1 12 6 Op 1 3/0.100 + CDS 16300 - 17421 1064 ## COG5438 Predicted multitransmembrane protein 13 6 Op 2 . + CDS 17418 - 18224 676 ## COG5438 Predicted multitransmembrane protein + Term 18238 - 18285 3.2 - Term 18219 - 18278 5.4 14 7 Tu 1 . - CDS 18291 - 18674 393 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes - Prom 18796 - 18855 9.8 + Prom 18680 - 18739 8.8 15 8 Tu 1 . + CDS 18825 - 19103 383 ## SH2546 hypothetical protein + Term 19112 - 19151 5.2 - Term 19099 - 19139 5.4 16 9 Tu 1 . - CDS 19333 - 20322 1170 ## COG1388 FOG: LysM repeat 17 10 Op 1 22/0.000 - CDS 20800 - 21642 1305 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 18 10 Op 2 32/0.000 - CDS 21684 - 22343 1035 ## COG2011 ABC-type metal ion transport system, permease component 19 10 Op 3 1/0.300 - CDS 22344 - 23366 1249 ## COG1135 ABC-type metal ion transport system, ATPase component - Prom 23404 - 23463 6.5 - Term 23509 - 23565 12.2 20 11 Op 1 8/0.000 - CDS 23586 - 24734 1532 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 21 11 Op 2 . - CDS 24737 - 25633 467 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 + Prom 25735 - 25794 8.2 22 12 Tu 1 . + CDS 25889 - 26419 410 ## SH2550 hypothetical protein + Term 26437 - 26493 13.0 - Term 26429 - 26476 11.4 23 13 Tu 1 . - CDS 26493 - 27821 1679 ## COG0733 Na+-dependent transporters of the SNF family - Prom 27921 - 27980 5.0 24 14 Op 1 . - CDS 27986 - 28234 350 ## SH2554 hypothetical protein 25 14 Op 2 1/0.300 - CDS 28247 - 28978 881 ## COG1647 Esterase/lipase 26 14 Op 3 . - CDS 29024 - 29695 415 ## COG0671 Membrane-associated phospholipid phosphatase 27 14 Op 4 . - CDS 29692 - 29835 67 ## gi|228474204|ref|ZP_04058941.1| hypothetical protein STAHO0001_2109 - Prom 30074 - 30133 7.1 - Term 30104 - 30159 1.6 28 15 Op 1 1/0.300 - CDS 30181 - 30543 355 ## COG5609 Uncharacterized conserved protein - Term 30546 - 30582 -0.4 29 15 Op 2 3/0.100 - CDS 30612 - 33173 2796 ## COG3002 Uncharacterized protein conserved in bacteria 30 15 Op 3 . - CDS 33189 - 34688 1694 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit + Prom 35207 - 35266 14.2 31 16 Tu 1 . + CDS 35423 - 36130 486 ## COG0671 Membrane-associated phospholipid phosphatase + Term 36168 - 36206 5.1 - Term 36148 - 36201 11.8 32 17 Op 1 13/0.000 - CDS 36207 - 37748 2335 ## COG0519 GMP synthase, PP-ATPase domain/subunit - Prom 37776 - 37835 3.7 33 17 Op 2 1/0.300 - CDS 37896 - 39362 2139 ## COG0516 IMP dehydrogenase/GMP reductase 34 17 Op 3 7/0.000 - CDS 39401 - 40669 407 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 35 17 Op 4 . - CDS 40666 - 41247 777 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins - Prom 41383 - 41442 9.7 + Prom 41642 - 41701 11.2 36 18 Tu 1 . + CDS 41772 - 42179 541 ## SH2586 hypothetical protein + Term 42270 - 42326 10.1 + Prom 42314 - 42373 11.3 37 19 Op 1 . + CDS 42395 - 43057 557 ## SH2587 hypothetical protein + Prom 43061 - 43120 2.4 38 19 Op 2 . + CDS 43184 - 43801 910 ## SH2588 hypothetical protein + Term 43835 - 43876 8.3 + Prom 43851 - 43910 6.5 39 20 Tu 1 . + CDS 44017 - 45408 1982 ## COG1823 Predicted Na+/dicarboxylate symporter + Term 45417 - 45461 6.3 - Term 45405 - 45449 10.1 40 21 Tu 1 . - CDS 45466 - 46221 1050 ## COG0778 Nitroreductase - Prom 46247 - 46306 13.5 + Prom 46287 - 46346 7.8 41 22 Tu 1 . + CDS 46377 - 47156 942 ## COG3971 2-keto-4-pentenoate hydratase + Term 47280 - 47325 1.1 + Prom 47305 - 47364 10.0 42 23 Op 1 11/0.000 + CDS 47559 - 48128 735 ## COG0450 Peroxiredoxin 43 23 Op 2 . + CDS 48143 - 49666 422 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 + Term 49734 - 49772 2.4 + Prom 49750 - 49809 7.2 44 24 Tu 1 . + CDS 49902 - 50531 769 ## SH2594 hypothetical protein + Term 50598 - 50635 2.3 - Term 50586 - 50623 2.3 45 25 Tu 1 . - CDS 50629 - 51207 591 ## COG0406 Fructose-2,6-bisphosphatase - Prom 51283 - 51342 9.2 - Term 51435 - 51469 1.1 46 26 Tu 1 . - CDS 51486 - 51734 551 ## COG2261 Predicted membrane protein - Prom 51821 - 51880 9.2 - Term 51956 - 52007 5.3 47 27 Tu 1 . - CDS 52015 - 52959 1220 ## gi|228474195|ref|ZP_04058932.1| conserved hypothetical protein - Prom 53031 - 53090 7.1 - Term 53085 - 53128 8.2 48 28 Op 1 21/0.000 - CDS 53143 - 53385 416 ## PROTEIN SUPPORTED gi|70727625|ref|YP_254541.1| 30S ribosomal protein S18 49 28 Op 2 24/0.000 - CDS 53428 - 53946 721 ## COG0629 Single-stranded DNA-binding protein 50 28 Op 3 . - CDS 53968 - 54264 501 ## PROTEIN SUPPORTED gi|228474158|ref|ZP_04058895.1| ribosomal protein S6 - Prom 54344 - 54403 7.6 + Prom 54368 - 54427 6.4 51 29 Tu 1 . + CDS 54512 - 54703 252 ## SH2630 hypothetical protein + Term 54720 - 54780 12.5 - Term 54706 - 54768 15.4 52 30 Op 1 4/0.000 - CDS 54772 - 55869 1766 ## COG0012 Predicted GTPase, probable translation factor 53 30 Op 2 2/0.100 - CDS 55881 - 56084 170 ## COG4481 Uncharacterized protein conserved in bacteria 54 30 Op 3 1/0.300 - CDS 56105 - 56983 1123 ## COG0668 Small-conductance mechanosensitive channel - Prom 57031 - 57090 11.7 55 31 Tu 1 . - CDS 57114 - 57938 882 ## COG1475 Predicted transcriptional regulators - Prom 58022 - 58081 10.7 + Prom 58388 - 58447 6.2 56 32 Op 1 5/0.000 + CDS 58623 - 59726 1179 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 57 32 Op 2 5/0.000 + CDS 59723 - 60898 1518 ## COG0626 Cystathionine beta-lyases/cystathionine gamma-synthases 58 32 Op 3 9/0.000 + CDS 60852 - 62690 1764 ## COG0685 5,10-methylenetetrahydrofolate reductase 59 32 Op 4 1/0.300 + CDS 62687 - 64933 2972 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 64953 - 64986 2.3 60 33 Tu 1 . + CDS 65012 - 65758 1033 ## COG1878 Predicted metal-dependent hydrolase 61 34 Tu 1 . - CDS 65868 - 66419 435 ## PROTEIN SUPPORTED gi|228004629|ref|ZP_04051602.1| acetyltransferase, ribosomal protein N-acetylase - Prom 66459 - 66518 6.6 + Prom 66510 - 66569 6.7 62 35 Tu 1 . + CDS 66604 - 68178 1923 ## COG1292 Choline-glycine betaine transporter + Term 68183 - 68226 7.9 - Term 68353 - 68395 3.3 63 36 Tu 1 . - CDS 68403 - 68975 688 ## COG0681 Signal peptidase I - Prom 69188 - 69247 5.9 + Prom 68970 - 69029 6.0 64 37 Op 1 . + CDS 69187 - 69588 447 ## SH2663 hypothetical protein 65 37 Op 2 36/0.000 + CDS 69612 - 70370 319 ## PROTEIN SUPPORTED gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) 66 37 Op 3 . + CDS 70360 - 72240 1668 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 67 37 Op 4 . + CDS 72267 - 72458 294 ## SLGD_02529 hypothetical protein + Term 72468 - 72505 4.0 - Term 72449 - 72499 8.1 68 38 Tu 1 . - CDS 72500 - 73075 410 ## COG1396 Predicted transcriptional regulators - Prom 73106 - 73165 7.0 - Term 73402 - 73438 2.5 69 39 Op 1 . - CDS 73491 - 74033 433 ## COG1309 Transcriptional regulator 70 39 Op 2 . - CDS 73999 - 74394 500 ## SH2671 hypothetical protein 71 39 Op 3 . - CDS 74413 - 74775 497 ## SERP0009 hypothetical protein - Prom 74868 - 74927 11.0 - Term 74886 - 74936 2.1 72 40 Op 1 4/0.000 - CDS 74946 - 75785 1146 ## COG1475 Predicted transcriptional regulators 73 40 Op 2 24/0.000 - CDS 75839 - 76561 878 ## COG0357 Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division 74 40 Op 3 11/0.000 - CDS 76561 - 78438 2671 ## COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division 75 40 Op 4 1/0.300 - CDS 78508 - 79887 1782 ## COG0486 Predicted GTPase - Prom 79916 - 79975 8.3 76 41 Op 1 . - CDS 80028 - 80372 236 ## COG0594 RNase P protein component - Prom 80409 - 80468 4.7 - Term 80436 - 80469 3.1 77 41 Op 2 . - CDS 80470 - 80622 259 ## PROTEIN SUPPORTED gi|27316887|gb|AAO06062.1|AE016752_95 50S ribosomal protein L34 - Prom 80664 - 80723 7.9 + Prom 81036 - 81095 6.9 78 42 Op 1 16/0.000 + CDS 81300 - 82652 1732 ## COG0593 ATPase involved in DNA replication initiation + Prom 82717 - 82776 7.8 79 42 Op 2 6/0.000 + CDS 82945 - 84075 1324 ## COG0592 DNA polymerase sliding clamp subunit (PCNA homolog) + Term 84103 - 84148 6.4 + Prom 84243 - 84302 7.6 80 43 Op 1 9/0.000 + CDS 84444 - 84677 393 ## COG2501 Uncharacterized conserved protein 81 43 Op 2 9/0.000 + CDS 84674 - 85789 1164 ## COG1195 Recombinational DNA repair ATPase (RecF pathway) 82 43 Op 3 24/0.000 + CDS 85811 - 87733 2341 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit 83 43 Op 4 . + CDS 87775 - 90429 3897 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit Predicted protein(s) >gi|312979662|gb|ACRM01000003.1| GENE 1 883 - 1479 737 198 aa, chain - ## HITS:1 COG:SA0438 KEGG:ns NR:ns ## COG: SA0438 COG0353 # Protein_GI_number: 15926157 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 198 1 198 198 373 93.0 1e-103 MHYPEPISKLIDSFMKLPGIGPKTAQRLAFYTLDMKEDDVVKFAKALVDVKRELTYCNIC GHITEKDPCYICEDKQRDRSIICVVEDDKDVIAMEKMKEYKGLYHVLHGSISPMDGIGPE DINIPTLIDRLKDEEVKELILAMNPNLEGESTAMYISRLVKPIGIKVTRLAQGLSVGGDL EYADEVTLSKAIAGRTEM >gi|312979662|gb|ACRM01000003.1| GENE 2 1487 - 1804 195 105 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149916415|ref|ZP_01904934.1| 30S ribosomal protein S21 [Roseobacter sp. AzwK-3b] # 5 103 9 107 114 79 39 5e-14 MRGGGNMQQMMKQMQKMQKKMAQEQEKLKDERIVGTAGGGMVAVTVTGHKEVVDVEIKEE AVDPDDIEMLQDLVLAATNEAMNKADNLTQERLGKHTQGLNIPGM >gi|312979662|gb|ACRM01000003.1| GENE 3 1931 - 3640 1985 569 aa, chain - ## HITS:1 COG:SA0436 KEGG:ns NR:ns ## COG: SA0436 COG2812 # Protein_GI_number: 15926155 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, gamma/tau subunits # Organism: Staphylococcus aureus N315 # 1 569 1 564 565 787 75.0 0 MNYQALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAK AINCLNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYAPSESKY KVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIST EQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDVLDV TGSVDEASLNELFNDIVNGNVKEAFSRYHHFVSEGKEVNRLINDMIYFVRDTIMNKTINE QTSYDALTQFDLETLYYMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEMVKTNPTKVENV ATTPVATEPNNEVLLQRMEQLENELKTLKAQGISQSNNKHTQTNTHSRSKRQSKAAFSMT QIAKVLDEANKEDIQLLKEHWQEVIDYAKSNDKKSLVSLLQNSIPVAASRKRVLIQFDEE IHCEIVNKDEEKRKNIENVVCNIIDKNVEVVGVPSDQWMRVRSEYINHRKQNDHHSSEST KDNTKEETSDIAQKAKDLFGEDTVNIIDE >gi|312979662|gb|ACRM01000003.1| GENE 4 3713 - 4231 509 172 aa, chain - ## HITS:1 COG:SA0435 KEGG:ns NR:ns ## COG: SA0435 COG3153 # Protein_GI_number: 15926154 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Staphylococcus aureus N315 # 1 166 1 165 174 162 48.0 4e-40 MQVYLSTLTEMDYIETLEKLEQHYTNNEGLDGKSHSKIISNLRKQPTYNYELEVIAKKED GDIIGHIMLNEVNLIDNEDTFKVLQLSSLIVATPYRNQGIGKALVQAVEERAKAHHYTAI IVDGCPDYFTTLGYASAAQHHIISKSDDKPLYVKFLWDQLSEYPHGKLEPIS >gi|312979662|gb|ACRM01000003.1| GENE 5 4910 - 5635 566 241 aa, chain - ## HITS:1 COG:SA0434 KEGG:ns NR:ns ## COG: SA0434 COG2188 # Protein_GI_number: 15926153 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 3 241 4 242 242 253 60.0 2e-67 MGQQKFAVIYEKLKKDISEGIYLHGEQLPSERELVETYHSSRETVRKALELLANDGMIQK IKGKGSIVIQQDITEFPFSDLISFKEVKEKLNLTHETHVLVNEIIKASDVPLVKEQLCLR NNDLLCHVVRSRSVDGKVKILDEDYFLTSLVPKISNEIARKSIYDYLEKELHLNISYSNK SITFEPFKDFEYQVFGKVHHPYTATVRSTVFLKDTTRFQYNVSKHLATEFKFNEFSRRQN K >gi|312979662|gb|ACRM01000003.1| GENE 6 5658 - 7295 1441 545 aa, chain - ## HITS:1 COG:SA0433 KEGG:ns NR:ns ## COG: SA0433 COG0366 # Protein_GI_number: 15926152 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Staphylococcus aureus N315 # 5 541 6 542 546 842 75.0 0 MIQNDWRKSVVYQIYPKSFNDTTGNGKGDLNGIIEKLDYIKYLGVDYIWLTPIYESPMND NGYDISDYFKINEEFGTLDDFKKLIYEAHRRDLKVMLDIVINHTSTEHHWFKEAIRSKDN PYRDFYFFKSSADGPPTNWQSKFGGNAWKYDEKSDEYYLHLFDVTQADLNWDNEKVRQAL YEMVNYWIQFGVDGFRFDVINLISKDEFKNSEAIGKEFYTDGPRVHQYLHELNRHTFGNR NMMTVGEMSSTTIDNCIKYTRPERQELNSVFNFHHLKVDYKDGEKWTNEKYDFLKLKKIL MEWQVGIHNGGGWNAIFWCNHDQPRVVSRFGDDTNELNRQASAKMLAIALHMLQGTPYIY QGEEIGMTDPHYTSIQKYRDVESLNAYTHLKEEGIPEEEILTILSQKSRDNSRTPIQWNQ NENAGFTSGTPWIDLPNNIDAINVEDAISNKDSVLHVYRQLIKLRHHYDIITYGDIEPLY MDHPQLFIYRRNYKNDSWLIIANFSNETVRIPDDLDIVGDIIIQSGTILDNKISPYGAIV ISKSY >gi|312979662|gb|ACRM01000003.1| GENE 7 7374 - 8816 1967 480 aa, chain - ## HITS:1 COG:SA0432_2 KEGG:ns NR:ns ## COG: SA0432_2 COG1263 # Protein_GI_number: 15926151 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 104 475 1 372 372 563 81.0 1e-160 MSVKRKDVQDIVQAIGGKENVDTATHCVTRLRLVLKDDNKVDKEALSNNTLVKGQFKADN QYQIVIGPGTVDEVYKQFVNETGVETASKDEAKTAAAKKGNPLQRLVKLLGDIFIPILPA LVTAGLLMGINNLLTMEHLFGPKALVEQHHQLGDISNIINVIASTAFIFLPALIGWSSMK VFGGSPILGLVLGLILMHPQLVSQYDIAKGQIPTWNLFGLEIKQLNYQGQVLPVLIAAYV LSLIEKALNKVVHDSIKMLVVGPVALLITGFLSFIIIGPIALGIGTAITGAIQFIFEHAG WLGGAIYGFFYAPLVITGLHHMFLAVDFQLMGSSLKGTYLWPIVAISNICQGSAAFGAWL IYKRRKMAKEEGLALTSGVSAFLGVTEPAMFGVNLPLKVPFFAAICTSGILGAVIGANRV LGNVGVGGVPAFISIQSKYWYIYIPVILLAMILPAVLTVVFSKFTKVKAKEMIENPDDRK >gi|312979662|gb|ACRM01000003.1| GENE 8 8992 - 9090 125 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAEEEGFEPPRPVKALSVFKTDPFSRTWVFLQ >gi|312979662|gb|ACRM01000003.1| GENE 9 9144 - 10607 1689 487 aa, chain - ## HITS:1 COG:SA0431 KEGG:ns NR:ns ## COG: SA0431 COG0493 # Protein_GI_number: 15926150 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: NADPH-dependent glutamate synthase beta chain and related oxidoreductases # Organism: Staphylococcus aureus N315 # 1 485 1 485 487 817 78.0 0 MGEFKGFMKYEKQSLAELSLIERLEGHEAFQQRFSREEASVQGARCMDCGTPFCQTGLPF GRETIGCPIGNYIPEWNDLVYHQDFKEAYERLSETNNFPEFTGRICPAPCEQSCVMKINR DSVAIKGIERTIIDEAYDNGWVKPKYPKEHKDQSVAIVGSGPAGLAAAEELNHVGYQVTV FERAAEPGGLLMYGIPNMKLDKTVVRRRIEIMREAGITFKTNTNIGVDITRDELEEQFDA IVLCTGAQKARDLPLEGRMGQGIHFAMDYLTEQMQVLNGEIEEASITAKDKNVIVIGAGD TGADCVATALRENCKSIVQFNKYTKAPEEITFESNTSWPLALPVFKMDYAHKEYEARFGR EPRAYGVQTMRYDVDTMGNIRGVYTQILEETPEGMVVVDGTERHWPADLVLLSIGFEGTE TTVPRSFDIKTKQNKIVANEQDYRTNQEKVFAAGDARRGQSLVVWAIKEGRAVAKSVDQY LKQKVLA >gi|312979662|gb|ACRM01000003.1| GENE 10 10626 - 15134 5366 1502 aa, chain - ## HITS:1 COG:SA0430_2 KEGG:ns NR:ns ## COG: SA0430_2 COG0069 # Protein_GI_number: 15926149 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Staphylococcus aureus N315 # 382 1198 1 813 813 1290 77.0 0 MFKDKLKRGLYDYREEHDACGIGFYANMDNLRSHDIIEKSLEMLRRLDHRGGIGADGITG DGAGIMTEIPFEFFKKHTHFDLPNEGEYAVGLFFSNQKVLDTQHEIVFNQYFNDEGLKVI GYRDVPVDTQALAEHVASTMPYVQQVFVDLNQHETPVKQLYLARKQIEQYAEREHLELYF TSLSHKTIVYKGWLRSDQIKTLYLDLNNEDYQSKLGLVHSRFSTNTFPSWKRAHPNRLLM HNGEINTIKGNVNWMRARQRQLINTLFGHESEKIQNIVDEDGSDSAIVDNALEFLSLAME PEEAAMLLIPEPWLYNKSNDEHVRAFYEFYSYLMEPWDGPTMISFCNGDKIGALTDRNGL RPGRYTITKDNFIVFSSEVGVIDVPEENVAFKGQLNPGKLLLVDFNSNKVIENNELKTHI AHKYPYKDWIDQYKIDLELDEVQYQRQLLDEATLFKVQKQFGYTKEDIHKYMTDLVVGKK DPIGAMGYDAPLAVLNERPESLFNYFKQLFAQVTNPPIDAYREKIVTSELSYLGSEGNLL HPAPNVLDRIQLTKPVLTLNQLDKIEQSKFNVKHLSTLYQDISLEEALNHIGEEAVQATK EGYTILVLDDSALINTTQSLHYAMPMLLAVSHIHQLLIKEDLRMSTSIVALSGETREVHH VACLLGYGANAVIPYLAQQTIAHLTDSHHLEGSISENVETYTNVLSEGVIKVMAKMGIST VQSYQGAQIFEAVGLSQNVIDTYFTGTQSKLSGLSIEQIDEENRKRQSNEEEYLASGSNF QWRQQGQHHVFNPTTIHLLQHACRENDYEQFKTFTNAVHDNRHDHLRDLLEFKSQSSIPI EQVESVESIVRRFNTGAMSYGSISEEAHQTLAKAMNKLGGKSNSGEGGENPKRYVIQEDG SYLSSAIKQVASGRFGVTSEYLQHAKELQIKVAQGAKPGEGGQLPGTKVYPWIAETRGST PGIGLISPPPHHDIYSIEDLAQLIHDLKNANKDADIAVKLVSKTGIGTIASGVAKAFADK IVVSGYDGGTGASPKTSIQHAGLPWELGLAETHQTLKLNDLRSRVRLETDGKLLTGRDVA LACALGAEEFGFATAPLVVLGCIMMRVCHNDTCPVGIATQNKDLRALYRGKADHVVNFMH FIAEELREVLAELGLKTVEELVGRTDLLQRSRHINPKSKAASLDIEKLLHAVDGPNTKEI AQNHHLDIGFDLNYLYKEAKQSIENGETFKGQYTINNTQRNVGVITGSYITKQHGSKGLP EETIIAETMGHAGQSLGAFAPKGLLIHHTGDANDYVGKGLSGGTVVVKAPKHARENEIIA GNVCFYGASSGKAYINGSAGERFCIRNSGVDVVVEGIGDHGLEYMTGGHVVILGDVGKNF GQGMSGGVSYIFPSDIEAFKKANQLSTLAFKRVQHDEEKHLLKSMLEEHYRYTESTKAKD ILNQFENVTEHVIKVIPKDYELMMQKIELQRRHLSEDNEAKLAAFYDHRTSIEKDLQPAV IY >gi|312979662|gb|ACRM01000003.1| GENE 11 15286 - 16182 1052 298 aa, chain + ## HITS:1 COG:SA0429 KEGG:ns NR:ns ## COG: SA0429 COG0583 # Protein_GI_number: 15926148 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 298 1 294 294 257 49.0 2e-68 MEIKQLRYFVEVARREHISEAALELNIAQSAISRQINLLEKELQVPLFDRQGRNIYLTSH GKALLTQATHILEQLDETVALFQQEQLKNAHHINLGFEESYASHMITPIIQTFEREYDSH IIPSLMNHTQIVDYLNSGKIDIAIVENTPELQANSTFSITSLYEETYHLYVPKDDAIALT FNPPLTQLKQFEKNPLYTLHVLPDSIKKRLESVIKVPIYTLGTTSLGQYLLKQRRGHLLL PDYISLDHSSEQVEDISLAHTELKRSFCVVFKKDNKKVDIFNLFHLIQTLLSKVSTYH >gi|312979662|gb|ACRM01000003.1| GENE 12 16300 - 17421 1064 373 aa, chain + ## HITS:1 COG:SA0428 KEGG:ns NR:ns ## COG: SA0428 COG5438 # Protein_GI_number: 15926147 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 23 362 20 359 370 392 64.0 1e-109 MNIKRLHIPKIKNTHRLIIIVTLIMIGLFIFTFFNASFYQIPIGKITNVETSHGQKVTDE HHNTDTTYNQRLTIRILNGKYKNDITTVNNHFVTSQADSEQFSKNEKVLLHIQKSPSDAT ILEKKRDGLTVAIVGVFIVTLLIVGKNVGLQSILSLLFNTAFIIVSIVIHNTFSGTNLFL LMSIAIILSTIITLVLVTGWQKRTWVTIIATLSGTFLCVGMTELLIQFTGGNGIKYETMS FLTLPPKDVFMSSVLIGTLGAVMDVAITISSGMYEILQRTPNISMSRWALAGRHIGQDIM GTMTNILLFSYLSGSLAMVLIYLKNANTFTYTISMNWSLEITRALTGGIGIVLTIPITIG LMVTIFKWKGVSR >gi|312979662|gb|ACRM01000003.1| GENE 13 17418 - 18224 676 268 aa, chain + ## HITS:1 COG:SA0427 KEGG:ns NR:ns ## COG: SA0427 COG5438 # Protein_GI_number: 15926146 # Func_class: S Function unknown # Function: Predicted multitransmembrane protein # Organism: Staphylococcus aureus N315 # 1 258 1 258 260 302 74.0 4e-82 MTTIFLLSLLLFILMILLGGKKGLISYLTLFLNFIILIISIVFILFGMPIYLVAFTFCLV IAACNLFILNSYNIKTQAAFIGTIVTTVLLIIGVYLSVKFGHLQGFATEQQDETYIFSMN IDINMLQFSVFTIMLAVIAAVIDLTITISSPMYELNETNPDLSRKELFQSGIRVGREILA TSANTIYLAYFGGQLTLFFWFFQLHYSFGHILNSKIFAQEFISILLGGIAVALSIPITAW VSARLIKYHQLKQTDDHTTTSSLNEEIE >gi|312979662|gb|ACRM01000003.1| GENE 14 18291 - 18674 393 127 aa, chain - ## HITS:1 COG:SA0425 KEGG:ns NR:ns ## COG: SA0425 COG0494 # Protein_GI_number: 15926144 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 1 125 1 125 131 159 60.0 1e-39 MIKCVCLVEETEDQILLVQVRHREKYYFPGGKIDEGETLLEAIQREIEEELQLHFSQEDF TYIGKVIGEAYPQPNTLTELNGFKVNQRINWNDVQIDNEVTDIRWFNKSDTQYIAPAVIK WIETFSI >gi|312979662|gb|ACRM01000003.1| GENE 15 18825 - 19103 383 92 aa, chain + ## HITS:1 COG:no KEGG:SH2546 NR:ns ## KEGG: SH2546 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 92 1 92 92 129 80.0 4e-29 MAKQSKLSRLSSLVSTAGFIVDGYNGIKYSAKNKNLVYLSLALSTAGTVFDFIVSMRSPR KFRKFTSFISFIVNVTRLASSFRKVKEDYHFE >gi|312979662|gb|ACRM01000003.1| GENE 16 19333 - 20322 1170 329 aa, chain - ## HITS:1 COG:SA0423_1 KEGG:ns NR:ns ## COG: SA0423_1 COG1388 # Protein_GI_number: 15926142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: FOG: LysM repeat # Organism: Staphylococcus aureus N315 # 1 208 1 216 216 182 64.0 1e-45 MNKKVLATAIIGTGALSTIFAHQAEAATTHTVKSGESLWSISNRYGITIAKLKSLNGLTS NLIFPNQVLTVSSSSSSHSYSNNSSSTYTVKSGDSLSSIASRYGTTYRHIMDLNGLHSFL IFPGQTLTVSGTARSSSHTQNSSNSSSSSSYYTVRYGDSLSGIAWKYNTTYQNIMRLNGL NNFFIYPGQKLRVSGTASSSSNTNRTSSSSNYYYHTPIFNHRNLYDWGQCTWHVFNRRAQ IGKGISTYWWNANNWDNAAARDGYRIDYHPTVGSIAQSDAGYYGHVAFVERVNSNGSLLV SEMNFSAGPGVLTYRTIPAYQVRQYKFIH >gi|312979662|gb|ACRM01000003.1| GENE 17 20800 - 21642 1305 280 aa, chain - ## HITS:1 COG:SA0422 KEGG:ns NR:ns ## COG: SA0422 COG1464 # Protein_GI_number: 15926141 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 1 279 1 278 280 355 77.0 5e-98 MKRIIGLLLASIIVLAACSGGGNSKKVTVGVASNDTAAWEKVKELAKKDDIDLEIKHFSD YNVPNKALSDGDIDMNAFQHFAFLNEYKKAHKDAKIEAISTTVLAPLGIYSKKVKDIKDV KDGAQVMIPNDVSNQARALKLLESAGLIKLKDNFGLSGTTKDIKDNPKHLKIKEVDAQQT ARALDDVDISVINNGVATKAGLDAKKDPIYLESSTSDAVKPYINLIAVNSKDKDNKTYKK IVDLYHSKEAQEALKKDTKDGEKAVDLSQKEIKDIEDSLK >gi|312979662|gb|ACRM01000003.1| GENE 18 21684 - 22343 1035 219 aa, chain - ## HITS:1 COG:SA0421 KEGG:ns NR:ns ## COG: SA0421 COG2011 # Protein_GI_number: 15926140 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Staphylococcus aureus N315 # 1 219 1 219 219 256 86.0 3e-68 MFGSSIDSSQLMQALYETLYMVTVSLIIGALIGIPLGILLVVTRKHGIWPNVVIHQILNP IINILRSIPFIILLIAIVPFTKLVAGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDDG IIEAAKAMGASPLQIIRHFLLPEALGSLVLAITTAIIGLIGSTAMAGAVGGGGIGDLALV YGYQRFDTLVIIITVVVLVIIVQIIQSLGNFISRIIRRN >gi|312979662|gb|ACRM01000003.1| GENE 19 22344 - 23366 1249 340 aa, chain - ## HITS:1 COG:SA0420 KEGG:ns NR:ns ## COG: SA0420 COG1135 # Protein_GI_number: 15926139 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 339 1 340 341 466 70.0 1e-131 MIEFQGVNKVFRKKRETIHALKDVSFKIDARDVFGVIGYSGAGKSTLVRLVNQLEQATEG HVIVDGHDINTYSEKELRNVKKDIGMIFQHFNLLNSKTVFKNVAMPLILSHKSNSEIKEK VEEMLEFVGLADKKNQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTSSIL QLLKNVNETFGVTIMMITHEMSVIQKICNRVAVMEHGEVVEIGTVKDVFSHPKTKTAQNF VSTVISTEPSKALRASFERADNHYTDYRLFLDKKQIDYPLMNELINQYGFNVNILFSSMS DIQDETICYLWLRFEHDAQFSRDTVESYFNERHIHYEEVR >gi|312979662|gb|ACRM01000003.1| GENE 20 23586 - 24734 1532 382 aa, chain - ## HITS:1 COG:SA0419 KEGG:ns NR:ns ## COG: SA0419 COG0626 # Protein_GI_number: 15926138 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Staphylococcus aureus N315 # 1 380 1 380 380 639 85.0 0 MKKKTQMIHGGHTTDDFTGAVTTPIYQTSTYLQDDIGDLRQGYEYSRTANPTRTSIESVI ANLENGKHGFAFGSGMAAISAVIMLLDKGDHLILNSDVYGGTYRALTKVFTRFGIDVDFV DTTNIENVKDYIKPETKMLYIETPSNPLLRVTDIRRAAEIATENHLISVVDNTFMTPYYQ NPLDFGIDIVLHSATKYIGGHSDVVAGLVATSNDELGERLAFISNSTGGVLGPQDSYLLI RGIKTLGLRMEQINRNVEGIVKMLQEHPSVQQVFHPSIESHLNHDIHIAQASGHTGVVAF EVKDTEAAKQLIRETQYFTLAESLGAVESLISVPALMTHASIPADVRAKEGITDGLVRLS IGIEDTEDLVQDLKQAIDTLNK >gi|312979662|gb|ACRM01000003.1| GENE 21 24737 - 25633 467 298 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 5 296 9 307 308 184 36 1e-45 MITYDLIGQTPLVLLESFSDEHVQIYAKLEQFNPGGSIKDRLGKYLVETALKEKRIVKGD TIVEATAGNTGIGLAMAANRYHLKCVIFAPEGFSEEKISIMRVLGAEIKRTPKNKGMMGA QKEARHYADKYNAVYMNQFETEHNPKAYTHTLGKEITEALPHIDYFVAGAGSGGTFTGVA KHLQQFNVKNIIVEPEGSVLNGGKAHAHDIEGIGSEKWPVFLEKSIVDDIITVSDNQGFE NVKRLAKQEGLLVGSSSGAALQGALDIKNRIDKGIIVTIFPDGSDRYMSKKIFEYKGE >gi|312979662|gb|ACRM01000003.1| GENE 22 25889 - 26419 410 176 aa, chain + ## HITS:1 COG:no KEGG:SH2550 NR:ns ## KEGG: SH2550 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 176 1 176 176 193 67.0 2e-48 MTSKADLSLSVFTKDDYKNLNYKNSTFRNSMYDEIEVNKSHFKHCDFSEGIFKNVSTISN SKIINCNFDKSIFENVNFFKTLISKSNLTVTSFDENHFNTLTIEHSIFKNSNIRNVKFDN VTFKKVIFENVTMDLCHFENVKIKDCIFKHVTINNSSIPEKLLKELHKQDVTFENM >gi|312979662|gb|ACRM01000003.1| GENE 23 26493 - 27821 1679 442 aa, chain - ## HITS:1 COG:SA0417 KEGG:ns NR:ns ## COG: SA0417 COG0733 # Protein_GI_number: 15926136 # Func_class: R General function prediction only # Function: Na+-dependent transporters of the SNF family # Organism: Staphylococcus aureus N315 # 4 442 6 445 446 608 82.0 1e-174 MSNQSQWKTSTGFILASAGSAIGLGAMWKFPYMAGIYGGGAFLFLFLIFTIFVGLPLLIM EFTVGIMGRTYTTRIYSKLTGKKWLNIIGWNGNLAVFILFGFYSVIGGWIVIYIGNVFLQ LLSVEHTSLTQIKFEKIISNPWLTVLGQGIFILLTMVIVMLGVEKGLEKASKMMMPLLFV FLIIVVAKSLTLDGALEGVRYILQPRIEDISVKGVLFALGQSFFTLSLGTTGMITYASYA PKEMTIKSSAMSIVIMNILVSVLAGLAIFPALKTFGYAPQEGPGLLFKVLPLVFNQMGFG IVFYLIFVILFLFAALTSSISLLELNVSNFTKNDNTKRKAISVIASILVFVISIPATLSF SSLSGIKFGAGTIFDNMDFIVSNILMPLGALGTTLVVGQLLDKQALKESFGKDKFKLFVP WYILIKYIMPVIIILVFIVQLF >gi|312979662|gb|ACRM01000003.1| GENE 24 27986 - 28234 350 82 aa, chain - ## HITS:1 COG:no KEGG:SH2554 NR:ns ## KEGG: SH2554 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 80 1 80 82 112 73.0 5e-24 MKRTFLLIYTTVSGTTYKEFKTFQDGPDYDTCVQRIIDEFDELVYLFLKDDSQVHYINVD HIESLNIQEVNEGQSIIYDFEK >gi|312979662|gb|ACRM01000003.1| GENE 25 28247 - 28978 881 243 aa, chain - ## HITS:1 COG:SA0416 KEGG:ns NR:ns ## COG: SA0416 COG1647 # Protein_GI_number: 15926135 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 242 1 242 244 243 47.0 2e-64 MKIKSPHPIYLEGSRKEAILLLHSFTGTVRDVKPLAKALNEENFTCFAPNYQGHGLPLYQ FTQFTIQDWWNDVLEGYQFLKNKGFDTIFVTGISLGGLFTLKLAELFDVSKIAVMSAPSE KEEKSIAWRMKRYGQRMNQLLKFDETTSKQQLGTIQDYQPHIAEFKAFIEIISNELERIQ VPARILYGGNDDAFYQNSAHYIFNHIDSNNKDLTCHPLSRHLMTYGDGHEDVITQVVTFF KSK >gi|312979662|gb|ACRM01000003.1| GENE 26 29024 - 29695 415 223 aa, chain - ## HITS:1 COG:SA0415 KEGG:ns NR:ns ## COG: SA0415 COG0671 # Protein_GI_number: 15926134 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 1 216 1 216 224 177 43.0 1e-44 MKDKLEVSPTKTISMFVVGLIIFIITATNVIYHTTLVQKLDLNSLHALTNYFGKPRRHYN GPIWHKMMTFCANFGEVKSILYITLFLALILIFKNYKLSLWLLVTIYTGTYINFLIKQII ARPRPYNHLLVDHGYSFPSGHSNASTLFALAILLVVIPLIKNKAIRYSIAIVVVIFWIGV LSCRLYFHAHYLTDVIGGFSLGMIWIALFSMTLPLFNIKLKKK >gi|312979662|gb|ACRM01000003.1| GENE 27 29692 - 29835 67 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474204|ref|ZP_04058941.1| ## NR: gi|228474204|ref|ZP_04058941.1| hypothetical protein STAHO0001_2109 [Staphylococcus hominis SK119] # 1 47 4 50 50 70 97.0 4e-11 MKQLIDNKERLNKWLSSSNFNKYEEQIHHLKAFYKILGSNVVKEKQV >gi|312979662|gb|ACRM01000003.1| GENE 28 30181 - 30543 355 120 aa, chain - ## HITS:1 COG:SA0413 KEGG:ns NR:ns ## COG: SA0413 COG5609 # Protein_GI_number: 15926132 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 120 1 120 120 174 78.0 5e-44 MTKSKGMYEAEISKAITQWEKDFLGRGSLSVKTDILRDMIIVNLQGILTPAEYRVCETQE GLLNIKRTRSELVESGQDDLMQLVFKITGTEVKSFHSDLSTITGERIIVFKLDKNLEKSL >gi|312979662|gb|ACRM01000003.1| GENE 29 30612 - 33173 2796 853 aa, chain - ## HITS:1 COG:SA0412 KEGG:ns NR:ns ## COG: SA0412 COG3002 # Protein_GI_number: 15926131 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 853 5 900 901 969 53.0 0 MTINIEDVVQSARRVITPLSPISIFAARNPWEELEYQTFDQVAQWFKHVRDIDLYPSHAS VMTALENGEIDKHIVEEEVQHAIQSYKTDIPKTHVDTYCKNAMNIKDIPRDLITKEAYLK LEVSKLKKVFENESFAYARSKSANAFNAKGESLMDELNTHIIKWSKLYLDTFQSSWTMPK REEGFYVAWLHLAKYDPMLTKTQRKMIKMLPHNYEDALIMALNHLDIAEDEYEFYLTGHL LSLPGWAGMMYYRAEKHEHEKDLLTQYLAIRLTMECILLDTEKMSRPAVLNVEKRIKELV SKWLYYGEMTIDEWAEMSIENQIEHLKFAHDFNPLYFKKLWLEAWEETHERKLVEMIYDK SVKRDKQPTKVQLAFCIDVRSEPFRRHLENQGPFETIGIAGFFGLPIRKKALDEQFSHDS LPVMVPPAYTIKEYAERHALNTYNQQQHSITSMFYTFKLMKNNVLPSLLLPELSGPFLSL NTLASTLMPKKTGAFIRKFTKNWLKKPNAKLTIDRDHHVHSDLPVGFTEEEQIAFTKQAL QLMDLTTNFAPLVVLGGHGSETNNNPYHASLECGACGGASSGFNAKLLAMMCNLPLVRQG LAAEGILIPDETVFVAAEHKTSIDELEWIYVPSLTSEAKKAFDILEEAMPRVSYHANLER LAQLPRLSDGELKHPMAEAHRFANDWSEIRPEWGLARNAEFIIGQRSITEGSNLEGRAFL HNYDYAKDPDGQLLNTIISGPALVAQWINLQYYASTVAPHFYGSGNKTTQSVTSGVGVMQ GNSSDLLAGLPWQSVMAGDNKIYHAPIRLLVVIQAPDRYIQRLLNDNIKFKQKVDHQWVR LASIDENGSFKDW >gi|312979662|gb|ACRM01000003.1| GENE 30 33189 - 34688 1694 499 aa, chain - ## HITS:1 COG:SA0411 KEGG:ns NR:ns ## COG: SA0411 COG1009 # Protein_GI_number: 15926130 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Staphylococcus aureus N315 # 1 499 1 494 494 531 60.0 1e-151 MLSMSSLLILFFITLIMAALSGLIVLIPSVPVKYIRFHLALLLLPVIVGIVGLVTINERE VIGIFALDKFAWLVGAFVLALGFIIQKFSTRYLLGDHNYRKYFPLYTFTTVFASLGWLSN DLRLMTLCWGLTLCCLTQLIRLNKTWKVPAEAAKVSARSFIIGWLALLIAVILLYIGTGE WTIDPSQNYDYALNHGLKLVIDLLLVVAVIIPAAQYPFQSWLIESVVAPTPVSAIMHAGI VNAGGIILTRFSPIFDNSIALTILLIISSMSVLIGSGISLVHVDYKRQLVGSTMSQMGFM LVQCAMGVYSAAIIHLILHGIFKATLFLQSGSVVRRFNIPTSPNIKKSYGWIILGRALAL IIAIVFFMTSDHSPYILISAFILAWSISVSWNQLVALNKGVMGRFIGITMIVVVAMVYIV THQVFVNILHHVYMAPAHPPLISIIISIAILVLGSIFSIWVARHRTSTAFAKVYLWLIKI GEAKFKSVESHPNYLKKYL >gi|312979662|gb|ACRM01000003.1| GENE 31 35423 - 36130 486 235 aa, chain + ## HITS:1 COG:SA0415 KEGG:ns NR:ns ## COG: SA0415 COG0671 # Protein_GI_number: 15926134 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 12 220 16 223 224 154 39.0 2e-37 MQNKQFTLTISFIISSLIFLITIFSVFTKSLWAHILDLQSFYWFLNTFGEPKMNFKGNWF NDFMTFLASYGDIATFITLTLIIATIVLIKRRFLLAIWLPTTVASAGIIGIALKDIIHRS RPYDHLTIDAGFSFPSGHALTSTIVIFALIFVLISKLGNMWIKCIINTVLIVVWLGILFS RLYFHAHYLTDVVGGIFFSLSWLFMSLMMYQYMLQKVNRRASLQQRRQSFQSKRN >gi|312979662|gb|ACRM01000003.1| GENE 32 36207 - 37748 2335 513 aa, chain - ## HITS:1 COG:SA0376_2 KEGG:ns NR:ns ## COG: SA0376_2 COG0519 # Protein_GI_number: 15926092 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase, PP-ATPase domain/subunit # Organism: Staphylococcus aureus N315 # 199 513 1 315 315 605 95.0 1e-173 MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIDEIKRMNPKGIILSGGP NSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIIKAKSDEL FFGLPEEQTVWMSHSDKVIEIPEGFEVIADSPSTNYAAIEDKKRRIYGVQFHPEVRHTEY GNDLLRNFVRRVCNCTGEWTMENFIEIEIEKIRERVGHRKVLCAMSGGVDSSVVAVLLHK AIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFDMNIIRVNAKERFMEKLKGVSDPEKKRK IIGNEFVYVFDDEAAKLTDVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFEL IEPINTLFKDEVRALGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILR EVIREEGLEREIWQYFTVLPGIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEV LQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE >gi|312979662|gb|ACRM01000003.1| GENE 33 37896 - 39362 2139 488 aa, chain - ## HITS:1 COG:SA0375_3 KEGG:ns NR:ns ## COG: SA0375_3 COG0516 # Protein_GI_number: 15926091 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 205 488 1 284 284 501 90.0 1e-142 MWENKFAKESLTFDDVLLIPAASDVLPSDVDLSVELSDKIKLNIPVISAGMDTVTESKMA IAMARQGGLGVIHKNMGIEEQADEVQKVKRSENGVITNPFFLTPDESVYEAEALMGKYRI SGVPIVKDEESRTLVGIITNRDLRFIEDFSIKISDVMTKENLITAPVGTTLDEAEAILQK HKIEKLPLVEKGRLEGLITIKDIEKVLEFPHAAKDEHGRLLAAAAIGTSKDTEIRAQKLA EAGVDALIIDTAHGHSKGVIEQVKKMKDKYPELTIIAGNVATAEATRALFEAGADVVKVG IGPGSICTTRVVAGVGVPQITAVYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAV MLGSLLAGTEESPGATEVFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKSPRKFVPEGIE GRTAYKGPLQDTIYQLMGGVRAGMGYTGSPNLKALREEAQFTRMGPAGLAESHPHNIQIT KESPNYSF >gi|312979662|gb|ACRM01000003.1| GENE 34 39401 - 40669 407 422 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 1 420 14 429 447 161 27 1e-38 MKNLILSVQHLLAMYAGAILVPIIVGTSLKFSPEEIAYLITVDIFMCGVATFLQANKITG TGLPIVLGCTFTAVAPMILIGQTKGLNVLYGSLFLSGILVVIIAPFFSYLVKFFPPVVTG SVVTIIGINLMPVAMNYLAGGQGAKDYGNPKNLILGGVTLIVILLLQRFTTGFLKSIAIL IGLVIGTILASIFGLVNVSQVGDAHWLGIPRPFRFSGFGFDFGATLVFTIVAIVSLIEST GVYHALSEITGRKLERKDFRKGYTAEGLAIILGSIFNAFPYTAYSQNVGLVSLSGAKKNK IIYGMVVLLLICGFIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGNIDFKNQNNL LIIAVSVGLGTGISAVPQAFKALGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQNDEN VK >gi|312979662|gb|ACRM01000003.1| GENE 35 40666 - 41247 777 193 aa, chain - ## HITS:1 COG:SA0373 KEGG:ns NR:ns ## COG: SA0373 COG0503 # Protein_GI_number: 15926089 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Staphylococcus aureus N315 # 1 192 1 192 192 317 89.0 6e-87 MEALEQKVKEDGVVIDEKILKVDGFLNHQIDAKLMYEVGQTFYKQFKDKGITKILTIEAS GIAPAIMAALHFDVPCLFAKKAKPSTLKDGFYSTDIHSFTKNKTSTVIVSEEFLGPEDKV LIIDDFLANGDASLGLYDIAQQAKAETVGIGIVVEKSFQDGRQRLEEAGLTVSSLCKVAS LAGNKVTLLGEDE >gi|312979662|gb|ACRM01000003.1| GENE 36 41772 - 42179 541 135 aa, chain + ## HITS:1 COG:no KEGG:SH2586 NR:ns ## KEGG: SH2586 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 135 1 135 135 173 77.0 1e-42 MPDITVLDNENQIYNVIEKKKAEGYSENEIFVISESKLHLDDLHNSQVTLIATSGSFSDR MSRLLTGEDGEEAVLNNFKLSDNQAEQYKKDVLDGKFLVITRKDASSHNEVEKNNAAYEE VDITHYANESDGPKS >gi|312979662|gb|ACRM01000003.1| GENE 37 42395 - 43057 557 220 aa, chain + ## HITS:1 COG:no KEGG:SH2587 NR:ns ## KEGG: SH2587 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 217 1 219 222 254 65.0 2e-66 MKFHTIYSLEDAYYQKAVEFYNKQLDVDFFEDSTITKRSLQNNKTENDYVLIVGIEKENI ISLATAHYEATTNSAFLVHLLAVVDSNYNEIISQTLNEVETHLNILSNKVHSRDINFLMI EVPKHDNSILDNQLIKRRHHILLENDFEQQYDIDYLHPNYTFEETPIHTDLFIKSNIELT KDIYPASVKSNYILKYVFANGISRDIIYPLLERMNLRSSL >gi|312979662|gb|ACRM01000003.1| GENE 38 43184 - 43801 910 205 aa, chain + ## HITS:1 COG:no KEGG:SH2588 NR:ns ## KEGG: SH2588 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 205 1 216 216 207 84.0 1e-52 MLTKEFAQRVELSEKQVRKIVQHLEERGYHLSKTEYRGREATDFKEEDIELFQDIAEKVK QTNSYDLAFEELEKEKDFLQVIVKEDQQQLPADQGVTQLVEDLRTEIQKMREERQMLGQM ITQVHQQQNELKELQSQITEKLEANNESLVAIQTAQKEQSDYTKNNLVKEINDNNQQAID TLKEHQTYVSSSNEKKGFLARLFNL >gi|312979662|gb|ACRM01000003.1| GENE 39 44017 - 45408 1982 463 aa, chain + ## HITS:1 COG:SA0368 KEGG:ns NR:ns ## COG: SA0368 COG1823 # Protein_GI_number: 15926084 # Func_class: R General function prediction only # Function: Predicted Na+/dicarboxylate symporter # Organism: Staphylococcus aureus N315 # 22 461 22 461 462 602 80.0 1e-172 MGTLFSIINIVIMLIFIISLFIMAKKHVSFPKRVFTALGLGIVYGIILHLIYGVNSKVLE TTTDWFSIVGDGYVTLLQMIVMPLIFISIVSAFSKIQIGDKFAKIGSYIFMFLIGTVAIA AVVGIFYAIVFGLDASSIDLGSAEHARGNEISSEAKQLTANTLPQQILELLPSNPFLDFT GQRTTSTIAVVIFAIFVGFAYLRVARKQPDNGSLLKRGIDAVYALIMSIVTFVLRLTPYG IIAIMASTIATSDFSAIWTLGKFMIASYAALLTMYVIHLIILAIMGINPIRYVKKTLEVL IFAFTSRSSAGALPLNVQTQTQRLGVPEGIANFSASFGLSIGQNGCAGIYPAMLAIMVAP VAHVDIDIPFILTLIGVVVISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISIEPII DMGRTALNVNDSMLAGTGTARLTGNLDKEKFNSNHYGELSTES >gi|312979662|gb|ACRM01000003.1| GENE 40 45466 - 46221 1050 251 aa, chain - ## HITS:1 COG:SA0367 KEGG:ns NR:ns ## COG: SA0367 COG0778 # Protein_GI_number: 15926083 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Staphylococcus aureus N315 # 1 251 1 251 251 357 70.0 8e-99 MSDYVYELAKKHHSVRRFKDQPLSEGVVRKLVEAGQSASTSSYLQTYSIIGVEDPEIKAQ LKEVSGQQYVVDNGYLFVFVLDYYRHNLINEDVEQHMETSFESAEGLLVGAIDVALVSEN IALAAEDMGYGIVYLGSLRNDVGRVREILDLPEYAFPLFGMAVGEPAEDENGSPKPRLPF EHIFHKNVYNSNKAHQKETLNAYDQMVSKYYQDRTNGVRNETWSQQVAGFLSGKARLDML EQLNKAGLMKR >gi|312979662|gb|ACRM01000003.1| GENE 41 46377 - 47156 942 259 aa, chain + ## HITS:1 COG:DRA0122 KEGG:ns NR:ns ## COG: DRA0122 COG3971 # Protein_GI_number: 15807791 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase # Organism: Deinococcus radiodurans # 6 255 8 264 268 123 32.0 4e-28 MTHANKEVSTALYQAFTSKKPINFISSSFELNELEAYHTQDDLINQLKNKQKSEIKGYKV SMTSAATQAIANTNEPAYGTILSTQVVEGDNSISLSTLFDPLLEPELIFELTADLPENAD VQTILESVKVAPGIEIPDARYKDWFPNFALSDLISDNTATGLIVVGKRVTPLDYKSFADI NLKLFKNDQEIETGHSSDVLGNPIESIKWLNKKLHSHGKRLEKGQFISSGTFISPLQLEK GIYIAEYEKVGSVKVEVKD >gi|312979662|gb|ACRM01000003.1| GENE 42 47559 - 48128 735 189 aa, chain + ## HITS:1 COG:SA0366 KEGG:ns NR:ns ## COG: SA0366 COG0450 # Protein_GI_number: 15926082 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Staphylococcus aureus N315 # 1 189 1 189 189 352 88.0 2e-97 MSLINKEILPFTAQAYDPKNDEFKEVSQDDLKGSWSVVCFYPADFSFVCPTELEDLQNQY SQLQDLGVNVFSVSTDTHFVHKAWHDHSDAISKIQYTMIGDPSQIITRNFDVLDEEAGLA QRGTFIVDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQ PGLDLVGKI >gi|312979662|gb|ACRM01000003.1| GENE 43 48143 - 49666 422 507 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 206 504 2 303 306 167 32 2e-40 MLNADLKQQLQQLLQLMEGDVEFRASIGSDDKSKELKDLLDEIAEMTDHITIVEKELKRT PSFQVSKPEEDTGITFAGIPLGHEFNSLVLAILQVSGRAPKEKQAIIDQIKGLEGNYNFE TYVSLTCQKCPDVVQALNLMSVINPNITHTMIDGAVFREESKDIMAVPAVFLDGEEFGNG RMTISDILSKLGSTQDASEYENKDPYDVLIIGGGPASGSAAIYTARKGLRTGIVADRIGG QVNDTAGIENFITVKQTTGSEFSSNLAAHIEEYDIDAMTGIRATKIEKTDKAIRVTLEND AVLESKTAIISTGASWRKLNIPGEDRLINKGVAFCPHCDGPLFENKNVAVIGGGNSGVEA AIDLAGIVKHVTLFEFAPELKADTVLQERLRSFPNVDIHTNARTAEVLGEDHVTGLSYED MSSGEMKELSLDGIFVQIGLVPNTKWIGDAVELNNRGEVVVDRENNTNVPGIFAAGDVTD QKYKQIIISMGSGANAALSAFDYIIRN >gi|312979662|gb|ACRM01000003.1| GENE 44 49902 - 50531 769 209 aa, chain + ## HITS:1 COG:no KEGG:SH2594 NR:ns ## KEGG: SH2594 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 209 1 208 208 234 77.0 2e-60 MKKSMVISSFLALLLMLSACAPNNDNNEDNHNQSNGVNAPKHAKNLTENDIFTSNKSHQK LTEDEMNKAIKKYLDVNSDILDNKYIMQSKIDRQSSGQTKITDKQAKKLSHLSNIAVKND LHFKKYVENNTLPDGYKDNVNRIIKYFHALNSTIANVDESIEQLNYQPQNTINIVDVPTH YAGDVNGNQQNKIKSFLNKKDIKTNVFDK >gi|312979662|gb|ACRM01000003.1| GENE 45 50629 - 51207 591 192 aa, chain - ## HITS:1 COG:SA0361 KEGG:ns NR:ns ## COG: SA0361 COG0406 # Protein_GI_number: 15926077 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Staphylococcus aureus N315 # 1 191 9 201 201 229 60.0 2e-60 MNLYLIRHGESQSNYDNKYNRAYYCGQLDVPLTEKGVESAKQLKPYFYNIKINDVYVSDL TRTKETYQYIFPYDTPTTVTSLLRERSLGLFEGQFKDKLMKNNMYHRYFHDPNYKDFRHS FIQKAPEGESYNDVYYRVKQFFETIHIQDDYTIVIIAHQVVIRCIMVYFGYINKEEALIK VIENCKPYLIEL >gi|312979662|gb|ACRM01000003.1| GENE 46 51486 - 51734 551 82 aa, chain - ## HITS:1 COG:SA0360 KEGG:ns NR:ns ## COG: SA0360 COG2261 # Protein_GI_number: 15926075 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 82 3 83 83 68 72.0 2e-12 MGFIIMIIVGGLIGWIAGMIMGKDIPGGILGNIIAGLIGSFIGSKLLGTWGPVWGGVPIF PALIGAIILIFIVSLILKAIKK >gi|312979662|gb|ACRM01000003.1| GENE 47 52015 - 52959 1220 314 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474195|ref|ZP_04058932.1| ## NR: gi|228474195|ref|ZP_04058932.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 314 1 308 308 292 96.0 2e-77 MRGKYLLAGIVASTLFLGACDLNIHLPGGNNDSSEDKQKTEKNDNKNKTSNNSNKNNDTN NDKNIDSSDTQQNNNDENTNYNQTEDIQPNDNKSIQSSEQNTQNQSENGINGNNETTTNE SHSTSDNQSNDSSNKELTPKQAEDVVYDWYKNQGFGHRLRNEFNYNPSKSTDEMYYIDYA ASDAYGTGTPYVAIVDKHTGSIVDNYNNMTDEEKAKRKQMNESKLEQSNRQRNNDVQNNE TKNDNETQHTSSNEENQNSAQSETQNDVQTSNQSENNDSTSTDASTQTKEEPTTSQIDRN EQAQPNHQSTNNEE >gi|312979662|gb|ACRM01000003.1| GENE 48 53143 - 53385 416 80 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|70727625|ref|YP_254541.1| 30S ribosomal protein S18 [Staphylococcus haemolyticus JCSC1435] # 1 80 1 80 80 164 100 1e-39 MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKILPRRVTGTSAKYQRML TTAIKRARHMALLPYVKDEN >gi|312979662|gb|ACRM01000003.1| GENE 49 53428 - 53946 721 172 aa, chain - ## HITS:1 COG:SA0353 KEGG:ns NR:ns ## COG: SA0353 COG0629 # Protein_GI_number: 15926067 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 172 1 167 167 209 79.0 2e-54 MINRVVLVGRLTKDPEYRSTPSGVSVATFTLAVNRTFTNAQGEREADFINVVVFRRQAEN VNNYLSKGSLAGVDGRIQSRSYENQEGRRIFVTEVVADSVQFLEPKNAQGGQRNQGNNDF QDYGQGFGGSQSGQNTSYNNNNNNRASNNNQSDNPFANANGPIDISDDDLPF >gi|312979662|gb|ACRM01000003.1| GENE 50 53968 - 54264 501 98 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228474158|ref|ZP_04058895.1| ribosomal protein S6 [Staphylococcus hominis SK119] # 1 98 1 98 98 197 100 2e-49 MRTYEIMYVVRPNIEEDAKKAVVERFNGILASEGSEVLEEKDWGKRRLAYEIEDFKEGFY FIVRIKTDNNRATDEFQRLAKINDDIIRYIVIREDQDK >gi|312979662|gb|ACRM01000003.1| GENE 51 54512 - 54703 252 63 aa, chain + ## HITS:1 COG:no KEGG:SH2630 NR:ns ## KEGG: SH2630 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 63 1 63 63 124 96.0 1e-27 MQLDLDWNKDFQEFQEILNCGINPEWLYCAKANMILEPAYTGEGKQFFSTKDIIKASKVI PFF >gi|312979662|gb|ACRM01000003.1| GENE 52 54772 - 55869 1766 365 aa, chain - ## HITS:1 COG:SA0351 KEGG:ns NR:ns ## COG: SA0351 COG0012 # Protein_GI_number: 15926064 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted GTPase, probable translation factor # Organism: Staphylococcus aureus N315 # 1 365 1 365 365 649 92.0 0 MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDTRLNKLTEMVEP KKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVAGRVN PLDDIEVINMELVLADLESVEKRLPRIEKMARQKDKTAEMEFRILSRIKEALEEGNPVRS LDFNEEDQKYVNQAQLLTSKKMLYIANVGEDEIGDDENDKVKTIREYAAKEDSEVIVISA KIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAWTFRQG MTAPQCAGIIHTDFERGFIRAEVTSYDDYVEHGGEQGAKEAGKQRLEGKDYIMKDGDIVH FRFNV >gi|312979662|gb|ACRM01000003.1| GENE 53 55881 - 56084 170 67 aa, chain - ## HITS:1 COG:SA0350 KEGG:ns NR:ns ## COG: SA0350 COG4481 # Protein_GI_number: 15926063 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 66 1 66 67 102 86.0 1e-22 MTPKYGINDIVEMKKQHACGTNQFKIIRMGADIRIKCENCQRSIMIPRQVFDKKIKKILV SHQDTES >gi|312979662|gb|ACRM01000003.1| GENE 54 56105 - 56983 1123 292 aa, chain - ## HITS:1 COG:SA0349 KEGG:ns NR:ns ## COG: SA0349 COG0668 # Protein_GI_number: 15926062 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Staphylococcus aureus N315 # 1 282 1 282 293 385 77.0 1e-107 MNQLKNVLTSLFQPLTEPEVYTNLATKLAMVIIYILVGLIVIGIINKAIEEAFKFQNKSN RGNKKRSKTLVSLIKNVVRYIVWFIVLTTVLSKFGISVNGIIASAGVVGIAVGFGAQTIV KDIITGFFIIFENQFDVGDYVKINSGGTTVAEGTVKSIGLRSTRINTITGELTILPNGSM GEITNYSITNGTSIVEIPVSVDENIDKVEKKLNKLFAAMRSKYYLFITDPVVLGIDGLDE TKVIIRISAETIPGEGASGSRILRKEIQKMFVQEGIKLPQPMYLRNTDKQNA >gi|312979662|gb|ACRM01000003.1| GENE 55 57114 - 57938 882 274 aa, chain - ## HITS:1 COG:SA0348 KEGG:ns NR:ns ## COG: SA0348 COG1475 # Protein_GI_number: 15926061 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 273 1 273 278 311 63.0 9e-85 MDNIEDQRIQLNNDEHVQYIKISSIKVNPYQPRKTFDEEKLQDLAESITTHGILQPIVLR KTINGYYIVVGERRFRASKLAGLEEVPAIVKSLSDSDMMELAIIENLQREDLNAIEEAES YQRLMNDLGLTQQKVAERLGKSRPYIANMLRLLNLPSDIAKLVRENRMSGAHGRTLLALK DVNTMKCIGKQAIKEGWSVRYLEKVVSEIQDGGQYKKEKLNTPSKPKFIQKQERALKEKF GTHIDISVSKNVGKIVFEFKSEAEFRRIIDKLNE >gi|312979662|gb|ACRM01000003.1| GENE 56 58623 - 59726 1179 367 aa, chain + ## HITS:1 COG:SA0347 KEGG:ns NR:ns ## COG: SA0347 COG0626 # Protein_GI_number: 15926060 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Staphylococcus aureus N315 # 1 366 1 366 367 588 78.0 1e-168 MKDTQLAQISLTKDLTGAIANPIYLSTAYQHPHLGQSTGYDYTRTKNPTRSSFEEAFAKL EGGTVSFATSSGMAAVQLICNLFKPGDEILVAFDLYGGTFRLFDYYEQQYGIHFKYVDFL NYEEVENSINKHTKALFIEPISNPQMIQIDVEPYYILSKKHHLLTIIDNTFLTPYLSTPL EQGADIVLHSATKYIGGHNDVLAGVVTVKDDTLAEQLGQFHNMIGATLSPLDCYLLQRGL KTLHLRIERSQDNARRLARRCETSDSIDEVLYSGKTGMLSLRLNKAYSVAKFLENLEICI FAESLGGTETFITFPYTQTHVDMPDDEKDKRGIDEHLIRLSIGIEDYKDIEADIIQALEN SKVGVIS >gi|312979662|gb|ACRM01000003.1| GENE 57 59723 - 60898 1518 391 aa, chain + ## HITS:1 COG:SA0346 KEGG:ns NR:ns ## COG: SA0346 COG0626 # Protein_GI_number: 15926059 # Func_class: E Amino acid transport and metabolism # Function: Cystathionine beta-lyases/cystathionine gamma-synthases # Organism: Staphylococcus aureus N315 # 1 385 1 385 386 611 79.0 1e-175 MSLSKETEVIFDEHRGVDYDSANPPLYDSSTFHQKVLGGNAKFDYARSGNPNRQLLEEKL AKLEGGQYGFAYASGIAAISAVLLTLQAEDHVILPDDVYGGTFRLTERILNRFNIKFTTV NATHPEEIEQAIQPNTKLIYIETPSNPCFKITDIKAVAHIAKKHDLLLAVDNTFMTPLGQ SPLALGADIVVHSATKFLGGHSDIIAGAAITNRKDVAEALYLLQNGTGIALSAHDSWTLA KHLKTLPVRFRQSTSNAEKLVDFLSQRDEVAEVYYPGNSDLHLSQAKSGGAVIGFRLKDE TKAQAFVDALTLPLVSVSLGGVETILSHPATMSHAAVPEEVRNERGITFGLFRLSVGLEQ PEELIADIDYALKEAFNESIIESFEEQRFSS >gi|312979662|gb|ACRM01000003.1| GENE 58 60852 - 62690 1764 612 aa, chain + ## HITS:1 COG:SA0345_2 KEGG:ns NR:ns ## COG: SA0345_2 COG0685 # Protein_GI_number: 15926058 # Func_class: E Amino acid transport and metabolism # Function: 5,10-methylenetetrahydrofolate reductase # Organism: Staphylococcus aureus N315 # 285 611 1 328 329 529 81.0 1e-150 MSRLLNHLKNNVLVADGAMGTILYSEGLDTCPEAYNLTHPNKVERIHRSYIEAGADVIQT NTYGANFEKLKVFGLEHKVKEIHKAAVQIAKRAANKETFILGTVGGFRGIKQEDLSLSTI QYHTDNQIDTLIEEGVDGLLFETYYDLDELTSVITATRQKYDIPIIAQLTASNTNYLVDG TEINEALKHLIECGANVVGLNCHHGPHHMQRSFSHIELPEHAYLSCYPNASLLDIENSEF KYSNNAKYFGDVAQELINEGVRLIGGCCGTTPEHISYIKESVKHLKPIKTKKVIPIHRTI NTNAKRTLKQNLTSKVKQRPTVIVELDTPKHLDTELFFENIGKLDEANIDAVTLADNSLA TVRVSNIAAASLIKQRYEIEPLVHITCRDRNLIGLQSHLLGLSLIGVSEILAITGDPSKV GHLPGATNVYDVNSKGLTELALRFNQGINVDGDALKKHTNFNIAGAFDPNVRKLDGAVKR LEKKVAAGMSYFITQPVYSKEKIKEVYEATKHLDTPLFIGIMPIASYNNALFLHNEVPGI KMSEDVLNQFKAVKDDKEKTKELSLRLSKELIDTVHEYFNGLYLITPFQRIDYSLELAAY SKAITQNKEAIS >gi|312979662|gb|ACRM01000003.1| GENE 59 62687 - 64933 2972 748 aa, chain + ## HITS:1 COG:SA0344 KEGG:ns NR:ns ## COG: SA0344 COG0620 # Protein_GI_number: 15926057 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Staphylococcus aureus N315 # 1 742 1 742 742 1313 87.0 0 MTTIKTSNLGFPRLGRKREWKKAIESYWAKKIDKTELDQTLTDLHKENLLLQKNYNLDSV PVGDFSLYDHILDTSLLFNIIPERFQGRTVDDDLLFDIARGNKEHVASALIKWFNTNYHY IVPEWDNVEPKVNRNILLDRFNYAKSINVNAHPVIVGPITFVKLSKGGSQSFEEKVQTLL PLYKEVLQSLVDAGAEYIQVDEPVLVTDESENYENITKEAYDYFADAGLGEKLVIQTYFE RVNVKFLSRLPVAGLGLDFVHDHGYNLEQIKAGDFDKSKTLYAGIIDGRNVWAADIEAKK ELIETLQPYAKAIVIQPSSSLLHVPVSLDDETLDTSIEEGLSFATEKLDELDALRRLFNN NDSKKYDELKARYERFQSQSFKNLEYDFDSVPTSRKSAFKDRKKAQDARLHLPDLPTTTI GSFPQTREVRKYRADWKNNRISDEEYNNFLENEIARWIKIQEEIGLDVLVHGEFERNDMV EFFGEKLQGFLVTKFGWVQSYGSRAVKPPVIYGDVKWTAPLTVKETVYAQSLTDKPVKGM LTGPVTILNWSFERVDVPRKVVQDQIALAIDEEVLALEEAGIRVIQVDEPALREGLPLRS EYHEQYLADAVNSFKLATSSVQDETQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHG DLIKDFEDINYDLGIGLGVYDIHSPRIPTEEEIATAIDRSLQQIDRSLFWVNPDCGLKTR KEDEVKDALTVLVNTVRKKREEKNKPVA >gi|312979662|gb|ACRM01000003.1| GENE 60 65012 - 65758 1033 248 aa, chain + ## HITS:1 COG:SA0343 KEGG:ns NR:ns ## COG: SA0343 COG1878 # Protein_GI_number: 15926056 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 1 248 1 248 250 432 83.0 1e-121 MTNYPLWDQLQQLKTAEWVDLTHTFDPDIPRFSEFEKGQVSTLFTVKEHGFYVQRWNIVT QYGTHIDAPIHFVENKRYLEDLDLKELVLPLIVLDYSKEVKNNDDFIVTRQYLEQWEAEN GRIEEGTFVALRTDWSKRWPDIEQFENRDTDGNQHLPGWGLDALKFLIEERGVKSIGHET FDTDASVDTAKNGDIVGERYILGQDTFQLELLTNLDQLPTRGAVIYAISPKPKDAPGFPV RAFAIKPS >gi|312979662|gb|ACRM01000003.1| GENE 61 65868 - 66419 435 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228004629|ref|ZP_04051602.1| acetyltransferase, ribosomal protein N-acetylase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] # 1 178 1 178 184 172 46 7e-42 MFGYQINDHLKLKILEEREAEPLFKLVDSNRNYLAEFLPFVEHTNKVEDSKTFIQSSLQQ FARGDGFHCGIWYDQKLVGVIGLHYLDLVNKRTSIGYYLAEDFQKKGIMTRCTKALIQYV YEEYDINRIEIRMSTKNKKSRAIPIRLGFTQEGILRSDERLQGEFSDSYVYSLLREEYEN EYK >gi|312979662|gb|ACRM01000003.1| GENE 62 66604 - 68178 1923 524 aa, chain + ## HITS:1 COG:SA1183 KEGG:ns NR:ns ## COG: SA1183 COG1292 # Protein_GI_number: 15926929 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Staphylococcus aureus N315 # 6 515 12 524 548 666 65.0 0 MENKSKQFSNVFIFASVIVGLLVIIGAIFPNKFGSISGAIGSFITETFGWYYMLLISIIL IFCITLIFHPIGKLKLGKPDDKPEFNTISWLTMLFSAGMGIGLVFYGSSEPISHYLSPPT ANKETEAALAEAMRSSFLHYGLHPWAVYGIVALALAYTQFRKNDLGLISHTLRPIFGNKV EGPLGTVIDVLAVFATIIGVAVSLGVGAMQINGGLNYLFGVPNNKLIQGVIILIVTVLFL ISAWSGLSKGIQYLSNLNMLLAAMLLIIIIIVGPTILIMNMFTSSIGEYLNTLIFNSFDV APLNSQKHEWLQSWTIYYWGWWMSWSPFVGIFIARISKGRSIREFVIAVLGVPTIISMLW FTAFGITGIEIGKQSKHIFSMPPETQLFGIFNETPMGTILSFIAIILVGSFFITSADSAT FVLGMQTSFGRLNPSGFVKIVWGVMLSAIAYVLLLSGGSTGLDALQSAAIISALPFSFVV ILMMISFFKDANQERKYLGLTLQPDHQRKKDYIKNNTTQQSKIK >gi|312979662|gb|ACRM01000003.1| GENE 63 68403 - 68975 688 190 aa, chain - ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 187 1 186 191 193 52.0 2e-49 MKREIMEWVISIVVGLLVVIVVTKFIGESYTVSGSSMYPTFQDRNKVIISKISKSMNHID NGDVVVFHEDSKRDFIKRVIGTPGDTVEYKGDQLYVNNKKVSEPYLDYNKKHKQGQYLTG SFKSSQIKGSNGEMKLPKDKYLVLGDNRQNSIDSRFDVVGLVDKKQLVGKVVWRYWPFNE WKTNFNPGTF >gi|312979662|gb|ACRM01000003.1| GENE 64 69187 - 69588 447 133 aa, chain + ## HITS:1 COG:no KEGG:SH2663 NR:ns ## KEGG: SH2663 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 20 133 22 135 135 178 86.0 5e-44 MKLLLRIILTILVIIVVIIGGLFGLNAYSDQHPNNRSINDWNKLNPLAPTHKYYVKTQKP SKVEVIDKEKDFYIYHYNQTGYTKDGKAKNIDYTASKKLKQHHYLVVSEKSHTITSYKEV KQSDIPTKAKEKL >gi|312979662|gb|ACRM01000003.1| GENE 65 69612 - 70370 319 252 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|157164682|ref|YP_001467345.1| 50S ribosomal protein L25 (general stress protein Ctc) [Campylobacter concisus 13826] # 3 221 4 220 223 127 30 2e-28 MPILNVNHVSKIYGTKQKFKALHDINFSVDKGEFVAIMGPSGSGKTTLLNVISSIDSISD GTVEISGNEINQLSNKKLAQFRKKELGFIFQDYSVLPTLTVKENIMLPLSVQKMKKDEME KNYQDVTEALGIYDLSDKYPSEISGGQQQRTAAARAFVHRPSIIFADEPTGALDSKSAQD LLHRLEDMNKQFNSTIIMVTHDPSAASFAQRVIMLKDGDIHSDIYQQSKTKSAFYNEIIQ LQSALGGVANDV >gi|312979662|gb|ACRM01000003.1| GENE 66 70360 - 72240 1668 626 aa, chain + ## HITS:1 COG:SA2493 KEGG:ns NR:ns ## COG: SA2493 COG0577 # Protein_GI_number: 15928287 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 626 1 626 626 635 57.0 0 MTFNQITLKNLKSNIKHYVLYLFSLILSIILYFSFVTLQYTHSLNNGSSKIINQGAKVGS VFLFITIIIFLMYANHLFIKRRTREFALFELIGLTRGNILRMLAIEQITLFISTGIIGVI IGILGSKLLLSILIKLMHLHIHASIGFEVAALIQTMIMLMLAFILIMLENAIFLKRRTIL SMMKDSMKTEAVKAKITTPECIAGILGLIMMMLGYYMSTEMFGKFQELTMALLTPFIILF LTVVGAYLFFRSSVSIIFKSLKKSKQGRVSITDVVFTSSIMYRMKKNAMSLTIITVISAV TVTILCFGAISKANADFNIQSSSPQDINFTKVKMAQQFEHQLNQHGIPYTKKTYENANTH IIENDVIKSKTGNAMQNESISIMADPHIKGHHATITNLQGPLSMMFNVQIHKDLKLKGQQ VKTFYVDKKDLNEIIPMDASLGGPVLKISADNYNALKTKNQLTHHYGFNIKHHSELSKAE TLAKKGNQNVVLKSETKKAIDESNGILIFVTSFLGLAFLVAAGCIIYIKQMDETEDEINN YRILRRIGFTNTDMIKGLALKIIFNFGLPLVVSLLHAFFAANAFMILIGNYTLTPIFIVM IIYSLVYLIFAVISFIHSERIIKDAI >gi|312979662|gb|ACRM01000003.1| GENE 67 72267 - 72458 294 63 aa, chain + ## HITS:1 COG:no KEGG:SLGD_02529 NR:ns ## KEGG: SLGD_02529 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 63 1 64 65 83 62.0 3e-15 MTIKEMIQHAYDDLVSLKVNWFNGIMLALIVLVVSSITTPFIGVPVGLLGGGYILKRYEK NNH >gi|312979662|gb|ACRM01000003.1| GENE 68 72500 - 73075 410 191 aa, chain - ## HITS:1 COG:SA2495 KEGG:ns NR:ns ## COG: SA2495 COG1396 # Protein_GI_number: 15928290 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 189 1 189 189 211 55.0 9e-55 MNIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDD LVRGDLNSNKQESIKRKMNIWSLVMIIGFTLSSILIGPLLYYFNSWGFIIIAILFLISFY SGTQIDKIKYKYNLDNYDRIVAFMNGKDPNEVKSSEKRNLFTSILSFIFIVGLFLCMCYL SIYLTEIFLKY >gi|312979662|gb|ACRM01000003.1| GENE 69 73491 - 74033 433 180 aa, chain - ## HITS:1 COG:CAC3481 KEGG:ns NR:ns ## COG: CAC3481 COG1309 # Protein_GI_number: 15896718 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 3 170 6 182 192 71 28.0 9e-13 MAGRPKDPTINEKIFKEIDQLLETTYFRDITIDQISENTGVSKATIYRRWKDKSSIIVDM FVSRIHVFENDYKTMYDELYHFLIRIMNIYQTHLGRAVIEILISYQKSEARDIFMKGYFD SNRKILKTIISKYIDEADQDLFIDLIFSPIYFNILIKPNVLNETYIKKLLKVILDAYNIE >gi|312979662|gb|ACRM01000003.1| GENE 70 73999 - 74394 500 131 aa, chain - ## HITS:1 COG:no KEGG:SH2671 NR:ns ## KEGG: SH2671 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 131 1 131 132 196 85.0 2e-49 MKLTFIKFLVGGLAVMLSYIISVMLPWKELGGVFATLPAVFLVSLFITGMQHGDVVAKHV SRGAVFGMTGVLCSILATWAMLYSTHEWLLSILVGFVVWFMSAVIIFEIVEFISRLRRRK DGWKTERSNNQ >gi|312979662|gb|ACRM01000003.1| GENE 71 74413 - 74775 497 120 aa, chain - ## HITS:1 COG:no KEGG:SERP0009 NR:ns ## KEGG: SERP0009 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 119 1 119 119 139 77.0 3e-32 MFGISISSAILHFVIGGIAVAFASMIAEKVGGKMGGIIATMPAVYLAAIIALAIDHRGEQ LIQMSIHLSSGAIIGIISCIITVLITSLYISKRDYKKGTAFAFICWLVISIAIFAVRHIS >gi|312979662|gb|ACRM01000003.1| GENE 72 74946 - 75785 1146 279 aa, chain - ## HITS:1 COG:SA2498 KEGG:ns NR:ns ## COG: SA2498 COG1475 # Protein_GI_number: 15928294 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 279 1 279 279 377 82.0 1e-105 MKKPFSKLFGLKNKEDIVDYIEENRHSSVESIQIERIVPNRYQPRQVFDSSKITELAESI EEHGLLQPIVVRPIEENMYEIIAGERRFRALQSLHQSKADVIIRHMNDEETAVVALIENI QRENLSAIEEAEAYKKLLEIGQTTQSELAQSLGKSQSFIANKLRLLKLAPKVIVRLREGK ITERHARAVLSLKEADQEQLIEQVIVQKLNVKQTEARVKQKLAPEKVKAKTFQFAKDLTQ ARDEVGKSIQAIEDSGIHVEHRDKDHEDYYEIKIKLYKR >gi|312979662|gb|ACRM01000003.1| GENE 73 75839 - 76561 878 240 aa, chain - ## HITS:1 COG:SA2499 KEGG:ns NR:ns ## COG: SA2499 COG0357 # Protein_GI_number: 15928295 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division # Organism: Staphylococcus aureus N315 # 4 239 3 238 239 404 80.0 1e-113 MSGIEWLTKALSEQGIELTDQQQQQFQTYYRLLVEWNEKMNLTSITDEHEVYLKHFYDSI TAGFYYDFNQPLTLCDVGAGAGFPSIPLKIVFPELKVTIVDSLNKRIQFLNHLAVELGLT QVSFVHDRAETFGKGVNRETYDVVTARAVARLTVLSELCLPLVKKGGQFIALKSAKGEEE LAEAQFGISILGGAFSDSYTFDLPEDAGERQMIIVDKRRQTPKKYPRKPGTPNKAPLLEN >gi|312979662|gb|ACRM01000003.1| GENE 74 76561 - 78438 2671 625 aa, chain - ## HITS:1 COG:SA2500 KEGG:ns NR:ns ## COG: SA2500 COG0445 # Protein_GI_number: 15928296 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: NAD/FAD-utilizing enzyme apparently involved in cell division # Organism: Staphylococcus aureus N315 # 1 625 1 625 625 1159 93.0 0 MVQEYDVIVIGAGHAGIEAGLASARRGAKTLMLTINLDNIAFMPCNPSVGGPAKGIVVRE IDALGGQMAKAIDKTHIQMRMLNTGKGPAVRALRAQADKVLYQQEMKRVIEDEDNLDIMQ GMVDELLIENDEVKGVRTNIGTEYHAKAVVITTGTFLRGEIILGNMKYSSGPNHQLPSIS LADNLRELGFEVVRFKTGTPPRVNSKTIDYSKTEIQPGDDVGRAFSFETTEYILDQLPCW LTYTNDRTHKVIDDNLHLSAMYSGMIKGTGPRYCPSIEDKFVRFNDKPRHQLFLEPEGRN TNEVYVQGLSTSLPEHVQRQMLATIPGLEKADMMRAGYAIEYDAIVPTQLWPTLETKMIK NLYTAGQINGTSGYEEAAGQGIMAGINAAGNVLGTGEKILSRSDAYIGVLIDDLVTKGTN EPYRLLTSRAEYRLLLRHDNADLRLTDIGYDLGMISEERYARFNDKRQQIQDEIDRLSNI RIKPNEHTQSVIEAHGGSRLKDGILAIDLLRRPEMTYNTILEILEETHQLPEAVEEQVEI QTKYEGYINKSLQQVEKVKRMEEKKIPEDLDYSKVDSLATEAREKLSEVKPLNIAQASRI SGVNPADISILLVYLEQGKLQRVKN >gi|312979662|gb|ACRM01000003.1| GENE 75 78508 - 79887 1782 459 aa, chain - ## HITS:1 COG:SA2501 KEGG:ns NR:ns ## COG: SA2501 COG0486 # Protein_GI_number: 15928297 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Staphylococcus aureus N315 # 1 459 1 459 459 751 91.0 0 MNFDTITSISTPMGEGAIGIVRLSGPEAVEIGDKLYKGKKKLKDVPSHTINYGHIIDPET DEVVEEVMISVLRAPKTFTREDIIEINCHGGILTINRILELTMTHGARMAEPGEYTKRAF LNGRIDLSQAEAVMDFIRSKTDRASKVAMNQIEGRLSDLIKQQRQSILEILAQVEVNIDY PEYDDVEDATTEFLLAQSKKIKNEIDQLLETGTQGKIMREGLSTVIVGKPNVGKSSMLNN LIQDNKAIVTEVAGTTRDVLEEYVNVRGVPLRLVDTAGIRDTEDIVEKIGVERSRKALSE ADLILFVLNNNEPLTEEDRTLYEVIKNEDAIVIVNKTDLERRLDIEEVKTMIGDTPLIQT SMLKQEGVDELELQIRDLFFGGEVQNQDMTYVSNSRHISLLKQARQTIQDAIDAAEAGIP MDMVQIDLTRTWELLGEIIGESASDELINQLFSQFCLGK >gi|312979662|gb|ACRM01000003.1| GENE 76 80028 - 80372 236 114 aa, chain - ## HITS:1 COG:SA2502 KEGG:ns NR:ns ## COG: SA2502 COG0594 # Protein_GI_number: 15928298 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RNase P protein component # Organism: Staphylococcus aureus N315 # 1 114 1 115 115 146 81.0 9e-36 MEKAYRIKRNSDFQRIYKKGKSVANRQFVVYTLKNEYEHFRLGISVSKKIGNAVTRNRIK RAIRENFKVHKQDMISKDIIVIARQPAKNMSTLEIQGSLEHVLKIAKVFNKRIK >gi|312979662|gb|ACRM01000003.1| GENE 77 80470 - 80622 259 50 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27316887|gb|AAO06062.1|AE016752_95 50S ribosomal protein L34 [Staphylococcus epidermidis ATCC 12228] # 1 50 1 50 50 104 100 2e-21 MEVFCMVKRTYQPNKRKHSKVHGFRKRMSTKNGRKVLARRRRKGRKVLSA >gi|312979662|gb|ACRM01000003.1| GENE 78 81300 - 82652 1732 450 aa, chain + ## HITS:1 COG:SA0001 KEGG:ns NR:ns ## COG: SA0001 COG0593 # Protein_GI_number: 15925706 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication initiation # Organism: Staphylococcus aureus N315 # 1 448 1 451 453 673 79.0 0 MSEQEIWKKVLEVAESEISKTTFNTFLKDTELKEIRDNVAYIFVIHEFYADWLNSNYKDV IQTIIKDIIGYEVDPKFYTAEQLAELDETSRKQSNTVKKTSAIDDSHDDMDQFNTHNTFD TFVIGPGNRFPHAASLAVAEAPAQAYNPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVL YTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQ NKKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIEEENLEIPA EALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDIIQVPKSKKISIQD IQKVVGHYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVI HAHEKISNDIKADSIFKQEVEDLEKEIRKQ >gi|312979662|gb|ACRM01000003.1| GENE 79 82945 - 84075 1324 376 aa, chain + ## HITS:1 COG:SA0002 KEGG:ns NR:ns ## COG: SA0002 COG0592 # Protein_GI_number: 15925707 # Func_class: L Replication, recombination and repair # Function: DNA polymerase sliding clamp subunit (PCNA homolog) # Organism: Staphylococcus aureus N315 # 1 376 2 377 377 665 93.0 0 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNNVILTGSDSEISIEITIPKQ VDGEDIVDITETGSVVLPGRFFVDIIKKLPGKDVKLSTNEQFQTLITSGHSEFNLSGLDP EQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNELICTATD SHRLAVRKLKLEDESENKNVIIPGKALSELNKIMSDNDEDIDIFFASNQVLFKVGNVNFI SRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTGNEVIEL SSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAIDNEEVEVEFFGTMKPFILKP KADDSVTQLILPIRTY >gi|312979662|gb|ACRM01000003.1| GENE 80 84444 - 84677 393 77 aa, chain + ## HITS:1 COG:SA0003 KEGG:ns NR:ns ## COG: SA0003 COG2501 # Protein_GI_number: 15925708 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 77 4 81 81 108 78.0 2e-24 MVQEVTVEGEITLGQFLKTEGIIESGGQAKWFLQDYDVLLNGERETRRGKKLADQDRIDF PDIPDIDSFIIIHQGEQ >gi|312979662|gb|ACRM01000003.1| GENE 81 84674 - 85789 1164 371 aa, chain + ## HITS:1 COG:SA0004 KEGG:ns NR:ns ## COG: SA0004 COG1195 # Protein_GI_number: 15925709 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair ATPase (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 371 1 370 370 588 85.0 1e-168 MKLKTLQLENYRNYEAVTLNCHPEVNILIGENAQGKTNLLESIYVLALAKSHRTSNDKEL IRFNSEYAKIEGELSYRHGTMPLTMYITKKGKQVKVNHLEQSRLTQYVGHLNVVLFAPED LNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKTDKTMLEV LNQQFAQYALNVTLRREQFIEELEALAQPIHAGITNQRETLSLTYLPSIKLSDTSKNKSE LLDEVITLLNEYQQREMDRAVCLYGPHRDDLGFNVNDMDAQTYGSQGQQRTTALSIKLAE IELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAK LYRINQGEIIK >gi|312979662|gb|ACRM01000003.1| GENE 82 85811 - 87733 2341 640 aa, chain + ## HITS:1 COG:SA0005 KEGG:ns NR:ns ## COG: SA0005 COG0187 # Protein_GI_number: 15925710 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Staphylococcus aureus N315 # 1 640 5 644 644 1129 91.0 0 MSDVNNTDNYGAGQIQVLEGLEAVRKRPGMYIGSTSERGLHHLVWEIVDNSIDEALAGYA NQIEVVIENDNWIKVTDNGRGIPVDIQEKMGRPAVEVILTVLHAGGKFGGGGYKVSGGLH GVGSSVVNALSQDLEVYVHRNETIYHQAYKKGVPQFDLKEVGSTEKTGTVIRFKADSEIF SETTVYNYETLQKRIRELAFLNKGISITLRDEREDKEQREDTYHYEGGIKSYVELLNENK EPIHDEPIYIHQSKDDIEVEIAIQYNSGYATNLLSYANNIHTYEGGTHEDGFKRALTRVL NSYGTQSKIIKDDKERLSGEDTREGLTAVVSVKHGNPQFEGQTKTKLGNSEVRQIVDRLF SEHFERFLYENPNVARIIVEKGIMASRARVAAKKAREVTRRKSALEISSLPGKLADCSSK NPDESEIFLVEGDSAGGSTKEGRDSKTQAILPLRGKILNVEKARLDRILNNNEIRQMITA FGTGIGGEFDISKARYHKIVIMTDADVDGAHIRTLLLTFFYRFMRPLIEAGYVYIAQPPL YKLTQGKQKYYVFNDRELDKLKAELNPTPKWQISRYKGLGEMNADQLWETTMNPENRMML QVKLEDAVEADQTFEMLMGDVVENRRQFIEDNAVYANLDF >gi|312979662|gb|ACRM01000003.1| GENE 83 87775 - 90429 3897 884 aa, chain + ## HITS:1 COG:SA0006 KEGG:ns NR:ns ## COG: SA0006 COG0188 # Protein_GI_number: 15925711 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Staphylococcus aureus N315 # 5 884 4 887 889 1407 85.0 0 MADSLPQSRINERNITNEMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMT PDKPYKKSARIVGDVMGKYHPHGDSSIYDAMVRMAQTFSYRYPLVDGQGNFGSMDGDGAA AMRYTEAKMTKITLELLRDINKDTIDFLDNYDGTEREPEVLPSRFPNLLVNGASGIAVGM ATNIPPHNLTEVIDGVLRLSQNPDVTISELMEDIQGPDFPTSGLILGKSGIRRAYETGRG SIQMRARASIEERGGGRQRIVVTEIPYQVNKARMIEKIAELAREKRIEGITDLRDETSLR TGVRVVIDVRKDANANVILNNLYKHTPLQTSFGVNMIALVNGRPKLINLKEALVEYLEHQ KTVVRRRTEYNLKKAKDRAHILEGLRIALDHIDEIISIIRESDTDKVAMETLQERFKLSE RQAQAILDMRLRRLTGLERDKIENEYNELLSYIAELEEILANEEVLLQLVRDELTEIKER FGDERRTEIQLGGLDHLEDEDLIPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGVQGMN TLEEDFVSQLVTLSTHDNVLFFTNKGRVYKLKGYEVPELSRQSKGIPVINAIELENDEVI STMIAVRDLEDENSFLVFATKKGIVKRSALSNFSHINKNGKIAIGFKEDDELIAVRLTDG KQDILLGTAHASLIRFPENSLRPLGRTASGVRGISLRENDVVVGLDVAYAESEDEVLVVT EKGYGKRTPVSEYRLSNRGGKGIKTAKITERNGNVVCITTVSGQEDLMIVTDGGIIIRLQ VEDISQNGRATQGVRLMKLGDNQAVSTVAKVIDKTEDEAATEAAQQTEHASAQTTESANE QVIDDTTPGNALHTESDEDDERTEVRQDFMDRVNEDIENDSDQN Prediction of potential genes in microbial genomes Time: Sun May 29 09:00:24 2011 Seq name: gi|312979661|gb|ACRM01000004.1| Staphylococcus hominis subsp. hominis C80 cont1.4, whole genome shotgun sequence Length of sequence - 25897 bp Number of predicted genes - 23, with homology - 22 Number of transcription units - 7, operones - 5 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 29 - 841 354 ## PROTEIN SUPPORTED gi|225086616|ref|YP_002657886.1| ribosomal protein S15 - Prom 953 - 1012 7.0 + Prom 1266 - 1325 7.5 2 2 Op 1 1/0.000 + CDS 1390 - 2673 1731 ## COG0172 Seryl-tRNA synthetase + Term 2696 - 2744 11.2 + Prom 2874 - 2933 10.4 3 2 Op 2 9/0.000 + CDS 2962 - 3657 831 ## COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) 4 2 Op 3 1/0.000 + CDS 3654 - 3983 286 ## COG4392 Predicted membrane protein + Term 4182 - 4228 9.4 + Prom 4149 - 4208 6.7 5 3 Op 1 1/0.000 + CDS 4242 - 5210 1099 ## COG2021 Homoserine acetyltransferase + Prom 5212 - 5271 7.0 6 3 Op 2 4/0.000 + CDS 5300 - 6211 889 ## COG4241 Predicted membrane protein 7 3 Op 3 9/0.000 + CDS 6221 - 8206 874 ## PROTEIN SUPPORTED gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 8 3 Op 4 16/0.000 + CDS 8203 - 8649 746 ## PROTEIN SUPPORTED gi|228475531|ref|ZP_04060249.1| ribosomal protein L9 + Prom 8660 - 8719 4.8 9 3 Op 5 3/0.000 + CDS 8761 - 10161 1641 ## COG0305 Replicative DNA helicase + Term 10172 - 10219 8.4 + Prom 10348 - 10407 9.3 10 3 Op 6 . + CDS 10439 - 11722 1733 ## COG0104 Adenylosuccinate synthase + Term 11859 - 11901 7.2 + TRNA 12108 - 12182 76.9 # Glu TTC 0 0 + TRNA 12188 - 12260 75.0 # Asp GTC 0 0 + Prom 12410 - 12469 8.2 11 4 Op 1 . + CDS 12618 - 12701 73 ## 12 4 Op 2 8/0.000 + CDS 12749 - 13450 1039 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 13 4 Op 3 4/0.000 + CDS 13463 - 15289 1798 ## COG5002 Signal transduction histidine kinase 14 4 Op 4 4/0.000 + CDS 15327 - 16610 1010 ## COG4863 Uncharacterized protein conserved in bacteria 15 4 Op 5 4/0.000 + CDS 16611 - 17402 678 ## COG4853 Uncharacterized protein conserved in bacteria + Term 17425 - 17470 6.7 + Prom 17586 - 17645 13.4 16 4 Op 6 . + CDS 17667 - 18458 1049 ## COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I + Term 18475 - 18535 11.1 + Prom 18752 - 18811 9.1 17 5 Op 1 . + CDS 18878 - 19357 390 ## COG1576 Uncharacterized conserved protein 18 5 Op 2 . + CDS 19415 - 21205 1096 ## THEYE_A0519 hypothetical protein 19 5 Op 3 . + CDS 21246 - 22403 736 ## lin1082 hypothetical protein + Term 22550 - 22596 1.5 + Prom 22796 - 22855 9.8 20 6 Op 1 . + CDS 22884 - 23576 469 ## SH0241 hypothetical protein 21 6 Op 2 1/0.000 + CDS 23580 - 24614 839 ## COG3410 Uncharacterized conserved protein 22 6 Op 3 . + CDS 24598 - 24948 331 ## COG1694 Predicted pyrophosphatase 23 7 Tu 1 . - CDS 25178 - 25852 452 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979661|gb|ACRM01000004.1| GENE 1 29 - 841 354 270 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|225086616|ref|YP_002657886.1| ribosomal protein S15 [gamma proteobacterium NOR5-3] # 9 243 238 472 497 140 35 6e-33 METLTNVTIPKRNDETHKGDYGKILLIGGSANLGGAIMLAARACLFSGSGLITVATHPTN HAAIHSRCPEAMVIDINDTKMLTKMIENTDSILIGPGLGVDFKGNNAITFLLQNIQPHQN LIVDGDAITIFCKLKPDIPTCRVIFTPHQKEWERLSGIPIEEQTYERNREAVDKLGATVV LKKHGTEIFFKDKEYKLPIGTPAMATGGMGDTLAGMITSFVGQFNSLQDAVTSATYIHSY IGEKLSEKMYVVPPSKLINQIPYVMKELER >gi|312979661|gb|ACRM01000004.1| GENE 2 1390 - 2673 1731 427 aa, chain + ## HITS:1 COG:SA0009 KEGG:ns NR:ns ## COG: SA0009 COG0172 # Protein_GI_number: 15925714 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Seryl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 426 1 427 428 729 86.0 0 MLDIKQFRDETDKVKSKIELRGDDSKVVDEVLELDNQRRDLIGKTEEMKARRNKVSDQIA EKKRNKEDADDVIKEMRELGDEIKENDAKLNEVDNKIRDILIRIPNLIADDVPQGADDTE NVELKKWGTPREFDFEPKAHWDLVEELKMADFERAAKVSGARFVYLTKDGALLERALMNY MLTKHTTQHGYTEMMTPQLVNADTMFGTGQLPKFEEDLFKVEKEGLYTIPTAEVPLTNFY RNEIIQPDVLPEKFTGQTACFRSEAGSAGRDTRGLIRLHQFDKVEMVRFEKPEDSWDALE DMTQNAEAILEELKLPYRRVNLCTGDIGFSASKTYDLEVWLPSYNDYKEISSCSNCTDFQ ARRANIRFKRDASSKPELVHTLNGSGLAVGRTFAAIVENYQNEDGSITIPEALVPFMGGK TEIRPVN >gi|312979661|gb|ACRM01000004.1| GENE 3 2962 - 3657 831 231 aa, chain + ## HITS:1 COG:SA0010 KEGG:ns NR:ns ## COG: SA0010 COG1296 # Protein_GI_number: 15925715 # Func_class: E Amino acid transport and metabolism # Function: Predicted branched-chain amino acid permease (azaleucine resistance) # Organism: Staphylococcus aureus N315 # 1 231 1 231 231 304 72.0 8e-83 MTSHVTFQQGVKECIPTLLGYIGIGLSFGIVAASQDFSVLEILLLCLLVYAGAAQFIICA LVITGTPISAIVLTTLIVNSRFFLLSMTLSPNYKDYGIWNRVALSSILTDETFGVAITPH LKGETINDRWLHGLNITAYSFWAIACVLGAVFGKYISHPEMLGLDFAITAMFIFLAMAQF ETITRSKVSIYIVLIAFVIVMMFILSWLMPSYVAILVTSICAATLGVVMDR >gi|312979661|gb|ACRM01000004.1| GENE 4 3654 - 3983 286 109 aa, chain + ## HITS:1 COG:SAS001 KEGG:ns NR:ns ## COG: SAS001 COG4392 # Protein_GI_number: 15925716 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 6 109 6 109 109 80 62.0 6e-16 MTITGHMLLLIVLCGLVTLIVRVVPFLMISRIQLSETVIKWLSFIPISLFTALVIDSFIV QHKGMQGFELNIPFIVATIPTVIIAVVTRSLTITIIVGIVFIAGIRWFF >gi|312979661|gb|ACRM01000004.1| GENE 5 4242 - 5210 1099 322 aa, chain + ## HITS:1 COG:SA0011 KEGG:ns NR:ns ## COG: SA0011 COG2021 # Protein_GI_number: 15925717 # Func_class: E Amino acid transport and metabolism # Function: Homoserine acetyltransferase # Organism: Staphylococcus aureus N315 # 1 322 8 329 329 559 82.0 1e-159 MTNYTVDTLYLGAFTTESGETIENLKLRYEHVGYSGQPLVVVCHALTGNHLTYGTDEHPG WWREIIDGGYMPIYDYQFLTFNVIGSPFGSSSPLNDAHFPKTITLRDIVKAIELGIKALG FTKIDILIGGSLGGMQVMELLYNHRFEVDKAVILAATDKTSSYSRAFNEIAREAIHIGGK EGLSIARQLGFLTYRSSKSYDARFTPDEVVNYQRYQGNKFKESYDLSCYLTMLNVLDSHH LDRQRDDVDEVFQSLNTKVLTMGFTDDLLYPDDQVRAVGERFKYHRHFFVPDNVGHDGFL LNFNDWAPNLYHFLKVSKFKRK >gi|312979661|gb|ACRM01000004.1| GENE 6 5300 - 6211 889 303 aa, chain + ## HITS:1 COG:SA0012 KEGG:ns NR:ns ## COG: SA0012 COG4241 # Protein_GI_number: 15925718 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 302 25 326 331 299 63.0 4e-81 MFSKVHPKAMIIGTIVLVAVALVTYVLPIIGLILCLFATIPGIIMWHKSIATFGIGALLT VVITTLLGNTFVLSAMILVLLLSFVIGQLLKERTSKERILYITTIYISIVTLIVFMLLQA FKKIPNTEVLIKPAKEAMNNAIVNSGVESDYKIILEEGFRQMAVQLPSYIIIIVFLLVLM NIIITFPILRKFKVATPMFRPLFAWQMNRTLLWIYMIVLVCVMFAMKPSIFQSIVLNFEV VLSLLMYIQGLSLIHFFGKAKRLPDAVSILLMVVGTVISPFTHIVSLLGVLDLGINLKRM IKK >gi|312979661|gb|ACRM01000004.1| GENE 7 6221 - 8206 874 661 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|194246575|ref|YP_002004214.1| 50S ribosomal protein L9 [Candidatus Phytoplasma mali] # 38 651 50 678 837 341 31 1e-111 MNRGGRMNRQSTKKALLIPYILMVLTAIAIVIVGFISKPLMATFTAIALIIMIVISAVLI KQALSKMDHYVDNLSGHISAGSNKAIKRMPIGLVVIDADDHIEWINQYMSEHLETNVISE PVNEVFPNILKQLERVQEIEIEHGQYHYHVRYSEEEHCLYFFDITEEVHTNELYEESKPI IATLFLDNYDEITQNMNDTQRSEINSMVTRIISRWATEYNIYFKRYSSDQFVAYLNQKIL AEIEDSNFDILSQLREKSVGYRAQLTLSIGVGEGTEDLIELGELSQSGLDLALGRGGDQV AIKNMNGNVRFYGGKTDPMEKRTRVRARVISHALKDILTEGDKVIIMGHKRPDLDAVGAA IGVSRFASMNNLEAYVVLNEEDIDPTLSRVMEEIDKKPELKERFVTSDEAWDMMTSKTTV VVVDTHKPEMVLDENILNKANRKVVIDHHRRGESFISNPLLVYMEPYASSTAELVTELLE YQPTEQRLSRLESTIMYAGIIVDTRNFTLRTGSRTFDAASYLRAHGADTILTQQFLKDDV DTYINRSELIRTVEVQDNGVAIAHGSNDKIYHPVTVAQAADELLSLEGIEASYVVAKRED NLIGISARSLGGINVQLTMEALGGGGHLTNAATQIKGVTIEEAIEQLQQAITEQMSRSED T >gi|312979661|gb|ACRM01000004.1| GENE 8 8203 - 8649 746 148 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228475531|ref|ZP_04060249.1| ribosomal protein L9 [Staphylococcus hominis SK119] # 1 148 1 148 148 291 98 2e-78 MKVIFTQDIKGKGKKGEVKDVPVGYANNFLLKNKYAVEATPGNLKQLEQQNRRAEADRQQ EIDDAKALKAKLEDIEVEVSAKTGEGGKLFGSISTKQIADALKNQHDIKIDKRKMDLPHG IHALGYTNVPVKLDKEVEGTIRVHTVEK >gi|312979661|gb|ACRM01000004.1| GENE 9 8761 - 10161 1641 466 aa, chain + ## HITS:1 COG:SA0015 KEGG:ns NR:ns ## COG: SA0015 COG0305 # Protein_GI_number: 15925721 # Func_class: L Replication, recombination and repair # Function: Replicative DNA helicase # Organism: Staphylococcus aureus N315 # 1 465 1 465 466 803 91.0 0 MDNMYDQRQMPHNNEAEQSVLGAIILDPELIGSTQEVLLPESFYRGAHQHIFRAMMNLNE DAHEIDVVTLMEQLTKEGTLSEAGGPQYLAELSNNVPTTRNIEYYRNIVANLALKRRLIQ TADSIANDGYNNELELDAILSDAEKRILELSANRQSDGFKDIRDVLGQVYETAEELDQNS GQTPGIPTGYRDLDQMTAGFNRNDLIILAARPSVGKTAFALNIAQKVATHEDNYTVGIFS LEMGADQLATRMICSSGNVDSNRLRTGTMTEEDWNRFTIAVGKLSRTKIFIDDTPGIRIT DLRSKCRRLKQEHGLDMIVIDYLQLIQGSGSRFSDNRQQEVSEISRTLKAIARELECPVI ALSQLSRGVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYYNRGDGEEDEDSTQFEP QSNDDNGEIEIIIAKQRNGPTGTVKLHFMKQYNKFTDIDYAHADMS >gi|312979661|gb|ACRM01000004.1| GENE 10 10439 - 11722 1733 427 aa, chain + ## HITS:1 COG:SA0016 KEGG:ns NR:ns ## COG: SA0016 COG0104 # Protein_GI_number: 15925722 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate synthase # Organism: Staphylococcus aureus N315 # 1 427 1 427 427 825 93.0 0 MSSIVVVGTQWGDEGKGKITDFLAEQADVIARFSGGNNAGHTIQFGGETYKLHLVPSGIF YKDKLAVIGNGVVVDPVALLKELDALNERGISTDNLRISNRAQVILPYHLAQDEYEERRR GDNKIGTTKKGIGPAYVDKAQRIGIRMADLLEKDTFERRLKENIEIKNAYFKGMFNETCP HFDEIFDEYYTAGQRLKEFVTDTAKILDDAFVADEKVLFEGAQGVMLDIDHGTYPFVTSS NPVAGNVTVGTGVGPTFVSKVIGVCKSYTSRVGDGPFPTELFDEDGHHIREVGREYGTTT GRPRRVGWFDSVVLRHSRRVSGITDLSINSIDVLTGLDTVKICTAYELDGETITEYPANL DQLRRCKPIFEELPGWTEDITGCRTLEELPENARKYLERISELCGVHISIFSVGPDREQT NLLEKLW >gi|312979661|gb|ACRM01000004.1| GENE 11 12618 - 12701 73 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLNYIVDKRALRRKIAPYNTVNVLLKI >gi|312979661|gb|ACRM01000004.1| GENE 12 12749 - 13450 1039 233 aa, chain + ## HITS:1 COG:SA0017 KEGG:ns NR:ns ## COG: SA0017 COG0745 # Protein_GI_number: 15925723 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 233 3 235 235 428 94.0 1e-120 MARKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD GMEVCREVRKKYDMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH YAQPAQESEGTTNEIAIKDIVVYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTRE HLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQHD >gi|312979661|gb|ACRM01000004.1| GENE 13 13463 - 15289 1798 608 aa, chain + ## HITS:1 COG:SA0018 KEGG:ns NR:ns ## COG: SA0018 COG5002 # Protein_GI_number: 15925724 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 607 1 608 608 1001 87.0 0 MKWLKQLQSLHTKLVIVYVLLIIIGMQIIGLYFTNSLEKELTNNFMKNIKQYATQLEVNI ERIYKDNPSNAQKEVQSLLNEYANRQEIEEIRFIDKDQIIMATAKLSSHSLINQKVNDNS VQKAISLGEANSHNVLKDYGNGKERIWIYNLPVKNGNDVIGNIYIESNINDVYNQLNNIN QIFIIGTAISLFITVILGFFIARTITRPITDMRNQTVEMSKGNYTQRVKIYGNDEIGELA LAFNNLSKRVQEAQANTESEKRRLDSVITHMSDGIIATDRRGRIRIVNDMAIKMLGMAKE DLIGYYMLNVLKIEGDFSLEEIQENNDSILIDMNEEEGIIARVNFSTIVQDTGFVNGYIA VLHDVTEQQQVERERREFVANVSHELRTPLTSMNSYIEALEEGAWKDENLAPSFLSVTRE ETERMIRLVNDLLQLSKMDNETEQITKEIVDFNMFINKIINRHEMAAKDTTFVREIPNET IFTEIDPDKMTQVFDNVITNAMKYSRGDKRVEFHVKQNALYNRMTIRIKDNGIGIPINKV DKIFDRFYRVDKARTRKMGGTGLGLAISKEIVEAHNGRIWANSVEGQGTSIFITLPCEVI DDGDWDEQ >gi|312979661|gb|ACRM01000004.1| GENE 14 15327 - 16610 1010 427 aa, chain + ## HITS:1 COG:SA0019 KEGG:ns NR:ns ## COG: SA0019 COG4863 # Protein_GI_number: 15925725 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 427 26 453 453 474 56.0 1e-133 MMSIVLTYMIWNFTPDLNNLDSADSKKNNTKTIGKPLTAKMDTVISPYQVVSVKGDKVKG LTPSRSQLAQVIDPLKDHEVSKVELMQKGYNLQTPILDHDFVVLDFTYDMPLTTYLGQVL NNSAKIPKHFSFNRILMDKNSKGDLELYALSKHHQQVMKVTIDAKATPFTKTIHHLEKDM ETYSEVITNKTTIDKSTHIFAPKHLKDLHSYRMVYDTISVETMNSILFDDSVIIRSGKSG STTYNNNTGVANYNDDSKKYHYKNLSEDESGSKDMDTSIPSTFEYINNHGGFFNDDFRLF DTDNMSGELTYQLFLNGHPTFNDQQLNEINVTWGEKGIYDYKRALLRSSVPLEGATTSLD NLETVRASLANNHNIDFEKVSNMIVGYKEDDKPDKDDIEVQRNSVFIPTWYVEYDGEWYV YQDGRLE >gi|312979661|gb|ACRM01000004.1| GENE 15 16611 - 17402 678 263 aa, chain + ## HITS:1 COG:SA0020 KEGG:ns NR:ns ## COG: SA0020 COG4853 # Protein_GI_number: 15925726 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 263 1 262 262 284 61.0 1e-76 MNWKLTKTLFIFVFVLVNIFLILIYINKVTKSQINETESDNEVNFQQEEIKVSTDVLNKD VSSTKMQMITATSKNFKSYAENKSSLETSDSGFTLSGEVDNTVNVSDRNLSDLKDYIINH IYNGKVYQLGDMNSNTVTYEQTYDGYPLLNNNKARLRFNIDDGKATTYKQTLMSKIEPAK GDNNPKKQVITPRKAIESLYFNRYLKAGDEVLDARLGYYSVVRETNVQLLQANWEIKVKH KGKEETKKYYVEATSVNPKVIDN >gi|312979661|gb|ACRM01000004.1| GENE 16 17667 - 18458 1049 263 aa, chain + ## HITS:1 COG:SA0021 KEGG:ns NR:ns ## COG: SA0021 COG1235 # Protein_GI_number: 15925727 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily I # Organism: Staphylococcus aureus N315 # 1 263 4 266 266 482 88.0 1e-136 MIRMSVLASGSTGNATYVESEKGSLLVDVGLTGKKMEGLFSQIDRDMKNLNGILVTHEHS DHIKGLGVIARRYGLPVYANEKTWKAIEKKDDKIPMDQKFIFNPYETKSIAGFDIESFNV SHDAIDPQFYIFHNNYKKFTMITDTGYVSDRMKGMIQGSDAFMFESNHDVDMLRMCRYPW KTKQRILSDMGHVSNEDAGHAMADVITGHTKRIYLSHLSRDNNMKDLARMSVGQVLNEHD IDTEREVLLCDTDKAQATPIYTL >gi|312979661|gb|ACRM01000004.1| GENE 17 18878 - 19357 390 159 aa, chain + ## HITS:1 COG:SA0023 KEGG:ns NR:ns ## COG: SA0023 COG1576 # Protein_GI_number: 15925729 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 159 1 159 159 261 91.0 3e-70 MKITILAVGKLKEKYWKQAIAEYEKRLGAYSKIEMIEVPDEKAPETMSDKEIEQVKAKEG QRLLAKIKPQATVITLEIQGKMLSSEGLAKELQQRMTQGQSDFVFVIGGSNGLHQDVLNR SNYALSFSKMTFPHQMMRVVLIEQVYRSFKIMRGEAYHK >gi|312979661|gb|ACRM01000004.1| GENE 18 19415 - 21205 1096 596 aa, chain + ## HITS:1 COG:no KEGG:THEYE_A0519 NR:ns ## KEGG: THEYE_A0519 # Name: not_defined # Def: hypothetical protein # Organism: T.yellowstonii # Pathway: not_defined # 82 566 84 554 585 134 24.0 1e-29 MEKFKEKVNDLEAIKTTRYYTEFVEKFKKIQEWAKNENLKNEVKLAQYEIEIFSLYEKNP ILSKNKSEKRFVATISFDDGREWPDIQKFTNDQIKYYEQRLNETNNLFLKVRYSDFLFEH GNKKTTKTKYEISKCLLSCLVEILTYYSDDFNYTSVLARLVEVSLLMGDREKLKKAIELI YLKMDEFDYNNEYSYVYEISKLIREILKSKHKKIILENHLNKIIIVLEKAIKNNFEDKNY YLHRVFCEELSQYRKFDLISSERRSELKKEIGKSYELEAEYQQGRNNKSLLVKANFLEKA MEKYMEIGEKEKSNEMKILVKRTYEEYENSNEMSLIRIPIEFPKEEIDKIIEGFISSDVQ ISLDKIAYSNDLIPKITVIEDLVDKLSKEFPLQCLISKGLLNDGKKVVETTTEEDNKTIN FNSNYMHHLNINVELLLKAIFDKLISEFEISTEDFMQKFNKWELLDNKNVPFIEHGISRF LEKDYLSALHILVPQFESTVRRMFSKAGYSTTSIRKGNTQQEVTFNEFLLRDDVKSTLGN DIHKLIQIVMVEQSGLNLRNEIAHGLIELSNINYTKCILVIYLFLILTRYSIEKND >gi|312979661|gb|ACRM01000004.1| GENE 19 21246 - 22403 736 385 aa, chain + ## HITS:1 COG:no KEGG:lin1082 NR:ns ## KEGG: lin1082 # Name: not_defined # Def: hypothetical protein # Organism: L.innocua # Pathway: not_defined # 2 337 4 342 387 151 31.0 4e-35 MKLEELLLITQQPLIEYSKNKKLLKGSRLFDFDERMNERKIPKILTNSDKYHVVEIANYD NLIIIDNEVINGNELIQVGQCIDFDSNVMSYLRNLIVNNKYEDDFFKILTNIKKSKQQIS CVPYLIENGNNIHSINKIISYETILSFSIFDRVSEFDFENRNFSRYFNDSEVILDTDDRY YHMMNIQDSNILQFQAIYLLVLMAFFIKNSSKKSAENKIVYLIQTFIKETENKLAYSELE LSVIFDYINNSDNNIFKSTNLNSKNLLSKLKGIAWDLFHIRTSEDQIALRNTNSKEVFLH SIFTADKGLSNVINNYSISRMLAHEEKLYVYRDNNIFKKLSKDKATKIQELLEKDRDSRI SNVREAKYNIQENIDIYEKYINEMI >gi|312979661|gb|ACRM01000004.1| GENE 20 22884 - 23576 469 230 aa, chain + ## HITS:1 COG:no KEGG:SH0241 NR:ns ## KEGG: SH0241 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 230 1 230 576 352 84.0 5e-96 MGNLLKIENINYSLEDLDNSVRKWNISANGKFLLRYPTVYIINDKKSENNFEVYVGETAD IRNRTRQHLNADKKVKSFWEDFSESKKSSMYVIGHELFNKSLTLDIENRLMQYLLSVENI SRVHNSRTNQQNEYYTSEMLDEIFSEIWQSLNKKNKSLFPIESIIKDSAIFKASPFHKLT QEQINAKEEILTKIKESILLNEDGQLIIVEGEAGSGKTVLMSTLLYELGK >gi|312979661|gb|ACRM01000004.1| GENE 21 23580 - 24614 839 344 aa, chain + ## HITS:1 COG:YPL245w_2 KEGG:ns NR:ns ## COG: YPL245w_2 COG3410 # Protein_GI_number: 6325011 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Saccharomyces cerevisiae # 162 334 5 169 175 96 36.0 9e-20 MDLDENLDIHLLVNHNEHVSIYSQIASKLGIANKKNKIVQKPTSFINNNSSDEKVDVVIV DEAHLLLTQGKQSYQGKNHLDDLLARAKVVVIVFDIKQVLTTEQIWEVDKLNEYFDKAKS NSNHVTLRNQMRINSDISTVNWIRNLVDYQVINSIPKDKLGYDIKIFDTPDELEKAIKIK ATHTDSGISRMLATFDWKYGTKPPNHEDFWRVKIGNWSMPWNYQLKANRNQVSLPWVEQD QTIDEIGSTFTIQGLDLNFAGVIIGPSVKYRNGKIIFDKSESANKKATQRRTLKDGSKQY FSEMLLKNELNVLLTRGVNGLYIYAVDDQLREALKIAAKDESNG >gi|312979661|gb|ACRM01000004.1| GENE 22 24598 - 24948 331 116 aa, chain + ## HITS:1 COG:BH3997 KEGG:ns NR:ns ## COG: BH3997 COG1694 # Protein_GI_number: 15616559 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Bacillus halodurans # 4 103 1 100 101 107 55.0 6e-24 MRAMDEINDIVKEINKFRDARNWRQFHNEKDLSLSITLEAAELLELFQWKTSDEVVETNR ERLAEEIADVLIYSYMLADNLNFDINDIIRKKLVKNAEKYPIAKSKDNKIKYNEMS >gi|312979661|gb|ACRM01000004.1| GENE 23 25178 - 25852 452 224 aa, chain - ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 378 95.0 1e-105 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ IWKKKHKKAYYKWRIDETYIKIKGKWNYLYRAIDAEGHTLDIWLRKQRDNHSAYVFIKRL IKQFAKPQKVITDQAPSTKVAMAKVIKTFKLKPDCHCISKYLNNLIEQDHRHIKVRKTRY QSINTSKNILKGIECIYALYKKNLRSLQIYGFSPCHEIRHMLAS Prediction of potential genes in microbial genomes Time: Sun May 29 09:01:15 2011 Seq name: gi|312979660|gb|ACRM01000005.1| Staphylococcus hominis subsp. hominis C80 cont1.5, whole genome shotgun sequence Length of sequence - 112484 bp Number of predicted genes - 118, with homology - 106 Number of transcription units - 79, operones - 25 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 1/0.250 - CDS 3 - 444 375 ## COG3316 Transposase and inactivated derivatives - Prom 514 - 573 4.1 2 2 Op 1 . - CDS 641 - 904 155 ## COG2801 Transposase and inactivated derivatives 3 2 Op 2 . - CDS 889 - 1203 351 ## SAR0066 putative transposase - Prom 1316 - 1375 6.6 + Prom 1120 - 1179 5.4 4 3 Tu 1 . + CDS 1330 - 2193 1004 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 2194 - 2247 0.1 + Prom 2214 - 2273 3.8 5 4 Tu 1 . + CDS 2333 - 2818 477 ## SH0117 hypothetical protein + Prom 2868 - 2927 5.0 6 5 Tu 1 . + CDS 2995 - 3369 285 ## COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases + Term 3433 - 3468 2.2 - Term 3415 - 3459 8.1 7 6 Tu 1 . - CDS 3476 - 5014 2149 ## COG0591 Na+/proline symporter - Prom 5050 - 5109 11.2 + Prom 5981 - 6040 9.3 8 7 Tu 1 . + CDS 6115 - 7131 927 ## COG1253 Hemolysins and related proteins containing CBS domains + Term 7150 - 7199 7.0 - Term 7870 - 7928 6.4 9 8 Op 1 1/0.250 - CDS 7941 - 9269 1544 ## COG0491 Zn-dependent hydrolases, including glyoxylases 10 8 Op 2 . - CDS 9288 - 10355 1210 ## COG2210 Uncharacterized conserved protein - Prom 10381 - 10440 5.9 11 9 Op 1 1/0.250 + CDS 10512 - 10754 306 ## COG1937 Uncharacterized protein conserved in bacteria 12 9 Op 2 . + CDS 10778 - 11509 695 ## COG0730 Predicted permeases + Prom 12035 - 12094 6.8 13 10 Tu 1 . + CDS 12191 - 12394 169 ## SERP2438 cation transporter E1-E2 family ATPase + Prom 12415 - 12474 5.2 14 11 Op 1 . + CDS 12617 - 14050 1129 ## COG2132 Putative multicopper oxidases 15 11 Op 2 . + CDS 14070 - 14552 665 ## USA300HOU_0085 lipoprotein + Term 14590 - 14655 11.8 - Term 14716 - 14750 5.3 16 12 Op 1 3/0.125 - CDS 14758 - 15153 537 ## COG0394 Protein-tyrosine-phosphatase 17 12 Op 2 7/0.062 - CDS 15172 - 16461 1447 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases 18 12 Op 3 . - CDS 16464 - 16778 90 ## COG0640 Predicted transcriptional regulators 19 12 Op 4 . - CDS 16775 - 16903 72 ## 20 12 Op 5 . - CDS 16918 - 18582 1705 ## COG0003 Oxyanion-translocating ATPase 21 12 Op 6 . - CDS 18629 - 18976 534 ## SH0112 hypothetical protein - Prom 19182 - 19241 9.9 + Prom 19135 - 19194 7.9 22 13 Op 1 . + CDS 19257 - 19451 219 ## SH0113 hypothetical protein 23 13 Op 2 4/0.062 + CDS 19497 - 19817 282 ## COG0640 Predicted transcriptional regulators + Prom 19823 - 19882 7.2 24 14 Op 1 . + CDS 19905 - 20789 1000 ## COG0701 Predicted permeases 25 14 Op 2 . + CDS 20803 - 20931 111 ## + Term 20967 - 21019 12.5 + Prom 21485 - 21544 6.3 26 15 Op 1 . + CDS 21641 - 23704 2160 ## COG2217 Cation transport ATPase 27 15 Op 2 . + CDS 23722 - 24267 696 ## USA300HOU_0085 lipoprotein + Term 24336 - 24400 10.1 - Term 24458 - 24495 1.4 28 16 Tu 1 . - CDS 24529 - 24996 726 ## SH2643 hypothetical protein - Prom 25170 - 25229 7.9 - Term 25443 - 25497 9.7 29 17 Tu 1 . - CDS 25546 - 26697 1345 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 26730 - 26789 4.8 - Term 27207 - 27245 -0.4 30 18 Tu 1 . - CDS 27396 - 27935 746 ## gi|228475572|ref|ZP_04060290.1| conserved hypothetical protein - Prom 28008 - 28067 16.6 - Term 28211 - 28255 3.3 31 19 Tu 1 . - CDS 28259 - 29299 1576 ## COG1064 Zn-dependent alcohol dehydrogenases - Prom 29469 - 29528 6.3 + Prom 29316 - 29375 7.9 32 20 Tu 1 . + CDS 29586 - 30227 940 ## COG2910 Putative NADH-flavin reductase + Term 30342 - 30393 6.5 + Prom 30252 - 30311 7.8 33 21 Tu 1 . + CDS 30488 - 30979 626 ## COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) - Term 31065 - 31108 10.1 34 22 Tu 1 . - CDS 31121 - 31321 402 ## COG1278 Cold shock proteins - Prom 31497 - 31556 8.1 - Term 31541 - 31599 2.4 35 23 Tu 1 . - CDS 31625 - 33031 1357 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 33156 - 33215 14.7 + Prom 33161 - 33220 11.1 36 24 Op 1 . + CDS 33272 - 33361 78 ## + Prom 33365 - 33424 2.0 37 24 Op 2 . + CDS 33449 - 34810 1754 ## COG0477 Permeases of the major facilitator superfamily + Term 34844 - 34885 7.0 + Prom 34813 - 34872 10.4 38 25 Tu 1 . + CDS 35100 - 36299 1723 ## COG0523 Putative GTPases (G3E family) - Term 36571 - 36613 8.6 39 26 Tu 1 . - CDS 36620 - 36952 454 ## SE2241 hypothetical protein - Prom 37072 - 37131 9.7 + Prom 37052 - 37111 11.3 40 27 Op 1 . + CDS 37144 - 37608 457 ## gi|228475439|ref|ZP_04060157.1| hypothetical protein STAHO0001_0534 + Prom 37610 - 37669 6.9 41 27 Op 2 . + CDS 37695 - 38207 833 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 42 27 Op 3 . + CDS 38222 - 38296 84 ## 43 27 Op 4 . + CDS 38262 - 38333 73 ## 44 27 Op 5 . + CDS 38388 - 39266 1022 ## COG0668 Small-conductance mechanosensitive channel + Prom 39268 - 39327 11.0 45 28 Tu 1 . + CDS 39461 - 39661 272 ## gi|228475761|ref|ZP_04060479.1| conserved hypothetical protein + Term 39677 - 39732 16.1 - Term 39665 - 39720 16.1 46 29 Op 1 . - CDS 39721 - 39810 69 ## - Prom 39859 - 39918 3.1 47 29 Op 2 . - CDS 39924 - 40067 94 ## COG0394 Protein-tyrosine-phosphatase 48 29 Op 3 . - CDS 40155 - 41702 2260 ## COG0471 Di- and tricarboxylate transporters - Prom 41875 - 41934 12.3 + Prom 41816 - 41875 12.3 49 30 Op 1 . + CDS 41958 - 42965 1010 ## SH2661 hypothetical protein 50 30 Op 2 . + CDS 42965 - 44290 1727 ## COG4640 Predicted membrane protein + Term 44303 - 44361 7.3 + Prom 44513 - 44572 9.0 51 31 Tu 1 . + CDS 44611 - 45678 876 ## COG3936 Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation + Term 45720 - 45765 6.4 + Prom 45684 - 45743 8.4 52 32 Tu 1 . + CDS 45984 - 46976 1307 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 46994 - 47054 2.7 + Prom 47026 - 47085 11.8 53 33 Op 1 . + CDS 47162 - 47386 267 ## SH0153 hypothetical protein + Term 47452 - 47506 1.3 + Prom 47461 - 47520 8.5 54 33 Op 2 . + CDS 47571 - 48959 1735 ## COG1114 Branched-chain amino acid permeases + Term 48975 - 49026 4.5 + Prom 49002 - 49061 12.5 55 34 Op 1 5/0.062 + CDS 49097 - 51217 2413 ## COG1401 GTPase subunit of restriction endonuclease 56 34 Op 2 . + CDS 51214 - 52248 737 ## COG4268 McrBC 5-methylcytosine restriction system component + Prom 52256 - 52315 5.3 57 34 Op 3 . + CDS 52344 - 53645 1428 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Term 53672 - 53707 2.4 58 35 Tu 1 . - CDS 53724 - 55100 1929 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 55211 - 55270 8.4 + Prom 55140 - 55199 10.1 59 36 Op 1 . + CDS 55407 - 56027 825 ## COG0778 Nitroreductase + Prom 56077 - 56136 9.5 60 36 Op 2 . + CDS 56236 - 58245 2551 ## COG0753 Catalase + Term 58257 - 58312 13.8 + Prom 58251 - 58310 4.0 61 37 Tu 1 . + CDS 58493 - 59023 661 ## COG0346 Lactoylglutathione lyase and related lyases + Prom 59025 - 59084 2.6 62 38 Tu 1 . + CDS 59150 - 59443 383 ## SH0167 hypothetical protein - Term 59597 - 59645 -1.0 63 39 Tu 1 . - CDS 59660 - 61927 3199 ## COG1075 Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold - Prom 61955 - 62014 10.0 - Term 62093 - 62133 5.1 64 40 Tu 1 . - CDS 62321 - 63832 1668 ## COG0477 Permeases of the major facilitator superfamily - Prom 63898 - 63957 11.8 + Prom 64191 - 64250 6.8 65 41 Tu 1 . + CDS 64294 - 65166 1176 ## SH0170 hypothetical protein + Term 65181 - 65221 4.3 + Prom 65209 - 65268 7.9 66 42 Tu 1 . + CDS 65288 - 66211 1203 ## SE0149 hypothetical protein + Term 66218 - 66260 7.0 67 43 Tu 1 . - CDS 66238 - 67113 851 ## SH0173 hypothetical protein - Prom 67139 - 67198 4.6 68 44 Tu 1 . - CDS 67232 - 68086 1036 ## COG1893 Ketopantoate reductase - Prom 68114 - 68173 5.9 + Prom 68070 - 68129 8.2 69 45 Op 1 19/0.000 + CDS 68169 - 68996 1356 ## COG0413 Ketopantoate hydroxymethyltransferase 70 45 Op 2 12/0.062 + CDS 68980 - 69831 1138 ## COG0414 Panthothenate synthetase 71 45 Op 3 . + CDS 69837 - 70220 488 ## COG0853 Aspartate 1-decarboxylase + Term 70227 - 70284 4.4 + Prom 70272 - 70331 9.9 72 46 Tu 1 . + CDS 70355 - 71806 1878 ## COG0659 Sulfate permease and related transporters (MFS superfamily) + Term 71810 - 71853 10.0 - Term 71797 - 71841 7.2 73 47 Tu 1 . - CDS 71857 - 72537 973 ## COG1876 D-alanyl-D-alanine carboxypeptidase - Prom 72604 - 72663 9.2 + Prom 72584 - 72643 7.5 74 48 Tu 1 . + CDS 72742 - 73617 1050 ## SH0194 hypothetical protein + Term 73635 - 73683 5.1 + Prom 73641 - 73700 4.6 75 49 Tu 1 . + CDS 73745 - 74206 330 ## COG1055 Na+/H+ antiporter NhaD and related arsenite permeases + Term 74293 - 74334 -0.2 + Prom 74389 - 74448 14.4 76 50 Tu 1 . + CDS 74491 - 75885 1663 ## COG1288 Predicted membrane protein + Prom 76013 - 76072 9.7 77 51 Op 1 10/0.062 + CDS 76187 - 76543 608 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Prom 76545 - 76604 5.1 78 51 Op 2 . + CDS 76763 - 76966 349 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 76999 - 77053 17.0 + Prom 77170 - 77229 9.1 79 52 Tu 1 . + CDS 77396 - 77635 230 ## gi|228475665|ref|ZP_04060383.1| conserved hypothetical protein + Term 77672 - 77714 6.4 + Prom 77704 - 77763 8.0 80 53 Tu 1 . + CDS 77788 - 79131 1930 ## COG0477 Permeases of the major facilitator superfamily + Term 79142 - 79181 6.1 + Prom 79135 - 79194 6.4 81 54 Tu 1 . + CDS 79232 - 80935 2252 ## COG3044 Predicted ATPase of the ABC class + Term 81101 - 81147 11.4 + Prom 81052 - 81111 6.8 82 55 Op 1 . + CDS 81305 - 81745 508 ## COG1846 Transcriptional regulators 83 55 Op 2 . + CDS 81763 - 83106 422 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 83118 - 83153 3.1 + Prom 83120 - 83179 8.5 84 56 Tu 1 . + CDS 83241 - 84098 1272 ## COG4594 ABC-type Fe3+-citrate transport system, periplasmic component + Term 84104 - 84157 11.1 - Term 84097 - 84139 9.1 85 57 Tu 1 . - CDS 84174 - 85169 1183 ## COG2855 Predicted membrane protein - Prom 85201 - 85260 10.8 + Prom 85186 - 85245 10.5 86 58 Tu 1 . + CDS 85283 - 86104 707 ## COG0583 Transcriptional regulator + Term 86120 - 86159 4.4 - Term 86106 - 86149 2.2 87 59 Op 1 1/0.250 - CDS 86175 - 86861 956 ## COG0693 Putative intracellular protease/amidase 88 59 Op 2 . - CDS 86945 - 87370 363 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 87541 - 87600 10.8 + Prom 87344 - 87403 8.4 89 60 Tu 1 . + CDS 87605 - 88117 919 ## COG3247 Uncharacterized conserved protein + Term 88148 - 88185 4.0 + Prom 88200 - 88259 7.0 90 61 Op 1 . + CDS 88295 - 89491 1556 ## COG1168 Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities 91 61 Op 2 . + CDS 89508 - 89915 427 ## COG2128 Uncharacterized conserved protein + Term 89917 - 89963 9.8 - Term 89905 - 89950 3.1 92 62 Tu 1 . - CDS 89961 - 90578 835 ## COG4300 Predicted permease, cadmium resistance protein - Prom 90705 - 90764 12.0 + Prom 90697 - 90756 12.0 93 63 Op 1 5/0.062 + CDS 90838 - 92190 759 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 94 63 Op 2 28/0.000 + CDS 92232 - 93185 1385 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 95 63 Op 3 24/0.000 + CDS 93255 - 94295 1565 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 96 63 Op 4 . + CDS 94310 - 95593 1811 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 95622 - 95660 6.5 + Prom 95661 - 95720 4.7 97 64 Op 1 . + CDS 95747 - 96085 180 ## PROTEIN SUPPORTED gi|18309686|ref|NP_561620.1| 30S ribosomal protein 98 64 Op 2 . + CDS 96075 - 96848 741 ## SH0229 hypothetical protein 99 64 Op 3 . + CDS 96855 - 97070 321 ## COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain + Term 97088 - 97124 4.0 + Prom 97439 - 97498 7.1 100 65 Tu 1 . + CDS 97567 - 99309 2222 ## COG0422 Thiamine biosynthesis protein ThiC + Term 99337 - 99373 3.2 + Prom 99364 - 99423 4.1 101 66 Tu 1 . + CDS 99462 - 100367 1033 ## COG2962 Predicted permeases + Term 100375 - 100420 6.5 - Term 100361 - 100410 13.2 102 67 Op 1 . - CDS 100439 - 100573 255 ## gi|228475534|ref|ZP_04060252.1| hypothetical protein STAHO0001_0468 103 67 Op 2 . - CDS 100598 - 100810 108 ## 104 67 Op 3 . - CDS 100908 - 101081 99 ## - Prom 101112 - 101171 9.7 + Prom 101223 - 101282 10.8 105 68 Tu 1 . + CDS 101328 - 101846 824 ## SE0258 immunodominant antigen B + Term 101861 - 101901 9.0 - Term 101851 - 101886 7.1 106 69 Tu 1 . - CDS 101895 - 102101 223 ## gi|228475562|ref|ZP_04060280.1| conserved hypothetical protein - Prom 102329 - 102388 9.9 107 70 Tu 1 . + CDS 102386 - 102574 152 ## + Prom 102576 - 102635 2.5 108 71 Tu 1 . + CDS 102793 - 103014 138 ## + Prom 103168 - 103227 6.0 109 72 Tu 1 . + CDS 103306 - 103428 72 ## + Term 103437 - 103480 6.3 - Term 103425 - 103468 -0.5 110 73 Tu 1 . - CDS 103669 - 104277 235 ## SLGD_00641 hypothetical protein - Prom 104356 - 104415 7.8 + Prom 104566 - 104625 9.2 111 74 Tu 1 . + CDS 104851 - 107109 2058 ## COG0178 Excinuclease ATPase subunit + Term 107118 - 107168 1.3 112 75 Tu 1 . - CDS 107382 - 107576 281 ## SSP1623 alcohol dehydrogenase 113 76 Tu 1 . + CDS 108054 - 108149 68 ## + Term 108182 - 108230 12.4 114 77 Op 1 . + CDS 108845 - 109237 373 ## COG0789 Predicted transcriptional regulators 115 77 Op 2 . + CDS 109266 - 110906 621 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 110998 - 111053 7.7 - Term 111118 - 111158 7.0 116 78 Op 1 . - CDS 111173 - 111322 78 ## SERP2224 metallothionein 2-related protein 117 78 Op 2 . - CDS 111339 - 111683 207 ## SERP2225 ArsR family transcriptional regulator - Prom 111703 - 111762 6.1 + Prom 111820 - 111879 6.2 118 79 Tu 1 . + CDS 112102 - 112483 237 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979660|gb|ACRM01000005.1| GENE 1 3 - 444 375 147 aa, chain - ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 147 1 147 224 244 97.0 5e-65 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ IWKKKHKKAYYKWRIDETYIKIKGKWNYLYRAIDAEGHTLDIWLRKQRDNHSAYVFIKRL IKQFAKPQKVITDQAPSTKVAMAKVIK >gi|312979660|gb|ACRM01000005.1| GENE 2 641 - 904 155 87 aa, chain - ## HITS:1 COG:SA0063 KEGG:ns NR:ns ## COG: SA0063 COG2801 # Protein_GI_number: 15925770 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 87 1 87 117 151 96.0 2e-37 MVPTVVIDLVDQLKGNYSIKLILEVLNIPKSTYYRWKNKTYKNDAVTQKVIELCEANHYT YGYRKITALINQCYTSPINHKRVQRIM >gi|312979660|gb|ACRM01000005.1| GENE 3 889 - 1203 351 104 aa, chain - ## HITS:1 COG:no KEGG:SAR0066 NR:ns ## KEGG: SAR0066 # Name: not_defined # Def: putative transposase # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 104 1 104 104 142 94.0 4e-33 MKRVSYSVETKYKAVEMKAAGFSTKEIMKELNIRNRTQVKTWWQWYQNGESYRFSQHVGK QYTYGKGLEELSEVEQLKLENKRKDIELDILKKYKVLEKKWYQQ >gi|312979660|gb|ACRM01000005.1| GENE 4 1330 - 2193 1004 287 aa, chain + ## HITS:1 COG:Cgl0894 KEGG:ns NR:ns ## COG: Cgl0894 COG0561 # Protein_GI_number: 19552144 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Corynebacterium glutamicum # 6 266 16 275 277 121 30.0 1e-27 MRDVMFELIVTDMDGTFLNSQGSFNREKFQQLLIKLKNRGIRLAFCTGKQSERVDAIVGD LAKDLFIIGDSASRIKINGMNIYTKTFSNQLGFEVIETIKAIDDNLVIIVCTDGMAYAEK RISEKERNMVLGSYEKVTFVENLNMINQDILKVTIFDSQGECFEHVKGLSKYEDNLYIVA AEEHWIDITHKDVDKGKTIRFLQNLLNISSEQTIVFGDGLNDIPLFENARYKVAMDNAYP ELKSKANLISINNDRDGVIETLNTLLINDDNCSVSDTQKHIINDAVF >gi|312979660|gb|ACRM01000005.1| GENE 5 2333 - 2818 477 161 aa, chain + ## HITS:1 COG:no KEGG:SH0117 NR:ns ## KEGG: SH0117 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 161 1 161 161 291 96.0 7e-78 MGINIQRFEEKDAEEIVKLIHRAMFETNIFDYSKEDLVKDAENITVSSIIERASWTHFYV FRDEETIIATGAIGPYWDSLTESSFFTIFVLPEYQGRGIGKLIINTLEDDEFYKRASRIE IPASITAVPFYQKFGYNFKDGVSNADEEGIVRMEKKLCDLN >gi|312979660|gb|ACRM01000005.1| GENE 6 2995 - 3369 285 124 aa, chain + ## HITS:1 COG:SA0189 KEGG:ns NR:ns ## COG: SA0189 COG0610 # Protein_GI_number: 15925899 # Func_class: V Defense mechanisms # Function: Type I site-specific restriction-modification system, R (restriction) subunit and related helicases # Organism: Staphylococcus aureus N315 # 1 121 1 121 929 156 65.0 7e-39 MAYQSEYALENEVLQQFENLGYERVNIHNVEQLHDNFRTIINERHKDKLNGKPLTDREFE RLMTGINGKSVFDSAMQLRDSYVLKRDDDTDLYLNFMNLKQWCQNKFQVTNQISVKDKYK SLMM >gi|312979660|gb|ACRM01000005.1| GENE 7 3476 - 5014 2149 512 aa, chain - ## HITS:1 COG:SA1718 KEGG:ns NR:ns ## COG: SA1718 COG0591 # Protein_GI_number: 15927476 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Staphylococcus aureus N315 # 1 512 1 512 512 704 73.0 0 MFILATSLSSQVNPDWRTYIMLAVYFFILLIIGYYGYKQATGDLSEYMLGGRNIGPYVTA LSAGASDMSGWMIMGLPGEVYTTGLSAAWLAIGLTIGAYVNYILVAPRLRVYTEKANDSI TLPNYFTHRLNDHSNIIKIISGGIIVVFFTLYTHSGMVSGGKLFNSAFGLDYHTGLIVVS VIVIAYTFFGGYLAVSLTDFFQGVVMLIAMVMVPIVAMMQLGGMDAFSQAADLKPTNLDL FKGTTIVGIISFFAWGLGYFGQPHIIVRFMSIKSVSQLKTARRFGISWMAISLIGAVCVG LIGIAFVQDRGVKLNDPETLFILMGQILFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL TEDFYKLIRGEEAAKKHKKEFLLVGRLSVLIIAIISIIIAWTPNDTILNLVGNAWAGFGA AFGPLVLLSLYWKGLSRTGAISGMISGSVVVIIWIVFVKPLGEYNDFFNLYEIIPGFLTS LIVTYIVSLITKKPNRDVEKELEEVKKLVKEK >gi|312979660|gb|ACRM01000005.1| GENE 8 6115 - 7131 927 338 aa, chain + ## HITS:1 COG:BS_yrkA KEGG:ns NR:ns ## COG: BS_yrkA COG1253 # Protein_GI_number: 16079714 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Bacillus subtilis # 3 338 2 348 434 329 51.0 4e-90 MGTLFSLITFILLLVLTAFFVATEFAIVKVRETRIAQLSNAGEKKAIAAKKVVDHLDEYL AACQLGITITALGIGMVGESTFEFILHPLFSSIGIPEAWIHPFTIGGAFVIATFLHVVVG EMAPKTIAIQKAEYITLLFAKPIIFFYKIMYPFIWLLNGAARLILKMFNMKPAKESEVFH SEEELKQLIQDSHEGGEINDSELHHINQAFKFDNLVAKDIMIDQEHVKTLNLNTRFDDAI QQIKVDAFTRYPAIKDGQIVGFIHSKSLFNVDQPSKLATFVNSIINVKLDTPLKHILEMM KKKKVHIVAVYDDADFKGIITLENILEEIVGDIEDEYN >gi|312979660|gb|ACRM01000005.1| GENE 9 7941 - 9269 1544 442 aa, chain - ## HITS:1 COG:SA0083_1 KEGG:ns NR:ns ## COG: SA0083_1 COG0491 # Protein_GI_number: 15925791 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Staphylococcus aureus N315 # 1 266 1 266 266 441 77.0 1e-123 MFFKQFYDKHLSQASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHAD FASGIRDVAIKLNANIYVSGESDDTLGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTPGHT PESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKQMFKSIE SIKDLPDYIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQTNWAFSENNEATFIDKLISDQP APPHHFAQMKKINQLGMDLYQPYTVYPATSTNRLTFDLRSKEAYHGGHIEGTINIPYDKN FINQIGWYLNYNQEINLIGDYQLVSKATHTLQLIGYDDVAGYQLPQSKVQTRSIHSEDIT GNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETDLPFSKNDVIYVHCQSGIRSSIAIGI LEHKGYHNIINVNEGYKDIHLS >gi|312979660|gb|ACRM01000005.1| GENE 10 9288 - 10355 1210 355 aa, chain - ## HITS:1 COG:SA0044_3 KEGG:ns NR:ns ## COG: SA0044_3 COG2210 # Protein_GI_number: 15925751 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 203 355 1 153 153 264 83.0 2e-70 MSQYKTKHINDFTKKELQELGSKGQLIDVRQPEEFELGHIKNALLHSVENIETFKQNKNK TYYIYCKSGNRSRKASQFLAQRGYDVVNLDGGYIAYEEQHHNDNLSKVKEDREIKDNRKT FNYSNLQCPGPIVNISKEIKNIAIGDQIEVIVTDHGFLNDIKSWVKQTGHTLVRLNDFGN EIRAIIQKEENKNIEVTHTKSGTTIVLFSGELDKAVAAMIIANGAKAAGRDVTIFCTFWG LNALKKIQSQRIKKKGIAKLFDFMLPNSPINMPISKMNMFGLGNLMMRYVMKKKNVDTLP SLIDQAVEQGVKLIACTMSMDVMGITKEELRDDVEYGGVGAYIGYTEQANHNLFI >gi|312979660|gb|ACRM01000005.1| GENE 11 10512 - 10754 306 80 aa, chain + ## HITS:1 COG:SA0045 KEGG:ns NR:ns ## COG: SA0045 COG1937 # Protein_GI_number: 15925752 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 80 7 86 86 97 82.0 4e-21 MINRIHRIQGQLNGVIKMMEEEKNCKDVISQLSASKSSIQRLMGIIISENLVECVKMSEE NSEDSQALINEAVELLIKSK >gi|312979660|gb|ACRM01000005.1| GENE 12 10778 - 11509 695 243 aa, chain + ## HITS:1 COG:SA0080 KEGG:ns NR:ns ## COG: SA0080 COG0730 # Protein_GI_number: 15925788 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 1 243 9 251 251 236 72.0 2e-62 MLVIGILGGFISGLVGIGGAIVIYPALLLLPPLFGLPTYSAYIASGLTSSQVFFSTLSGS LNAYKNKNFSRTLILNMGSGMVIGSMLGAILANLINVQFVNTVYIIIALLALILMFIKVT PSTSHIKFNRLLLITIGGIIGLVSGIVGAGGAFIIIPVLLVIFKLPMNMVVTNSIVIAFI SSIGAFMIKLLQGYIPINSAIPLILGSILFTPLGMKMGQKIPDYIQKTIICILIVVAIIK LIF >gi|312979660|gb|ACRM01000005.1| GENE 13 12191 - 12394 169 67 aa, chain + ## HITS:1 COG:no KEGG:SERP2438 NR:ns ## KEGG: SERP2438 # Name: not_defined # Def: cation transporter E1-E2 family ATPase # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 67 1 68 687 101 92.0 8e-21 MKNNGEAHNHQNHMNHSNQMHHDNHALHHHSGHAHHHGNFKVKFFVSLIFAIPIILLSPL MGVNLPF >gi|312979660|gb|ACRM01000005.1| GENE 14 12617 - 14050 1129 477 aa, chain + ## HITS:1 COG:Cgl0921 KEGG:ns NR:ns ## COG: Cgl0921 COG2132 # Protein_GI_number: 19552171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Putative multicopper oxidases # Organism: Corynebacterium glutamicum # 82 472 62 483 513 256 35.0 8e-68 MYNKVFAILIIIFSIIIIASNDTFAESKNDMMNMKEDKKNTMDMTNMKHHDERKKLNSSQ GKNEIIFPKVAESKKDNNGYKNYTLKAQEGKTEFYKNNFSNTLGYNGNLLGPTLKLKKGD KVKIKLINNLDENTTFHWHGLEVNGKVDGGPSQVIKPGKEKTIKFEVNQDSATLWYHPHP SPNTAKQVYNGLSGLLYIEDSKKNNYPSNYGKNDLPIIIQDKTFVSKKLNYSKTKDEDGT QGDTVLVNGIVNPKLTAKEEKIRLRLLNGSNARDLNLKLSNNQSFEYIASDGGQLKNAKK LKEINLAPSERKEIVIDLSKMKGEKISLVDNDKTVILPISNKEKSSNKSNTPKVGKKIKL EGMNDNVTINGNKFDPNRIDFTQKLNQKEVWEIENVKDKMGGMKHPFHIHGTQFKVLSVD GEKPPKDMRGKKDVISLEPGQKAKIEVVFKNTGTYMFHCHILEHEDNGMMGQVKVTN >gi|312979660|gb|ACRM01000005.1| GENE 15 14070 - 14552 665 160 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_0085 NR:ns ## KEGG: USA300HOU_0085 # Name: not_defined # Def: lipoprotein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 3 160 24 181 181 254 98.0 6e-67 MMKKDKDTNDQKSESHMKHNDESKVPEDMTSTNEGEFKVGDKVTITAGHMPGMKGAEATV KGAYKTYAYVVSYKPTNGNEKVNNHKWVVNEEIKDAPKDGFSKGDTVKLEASHMSGMKGA TANIDNVKKTTVYLVDYKSKDNGKIIKNHKWMTGNELKAR >gi|312979660|gb|ACRM01000005.1| GENE 16 14758 - 15153 537 131 aa, chain - ## HITS:1 COG:SAP018 KEGG:ns NR:ns ## COG: SAP018 COG0394 # Protein_GI_number: 16119218 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 236 87.0 8e-63 MDKKTIYFICTGNSCRSQMAEGWAKNILGDEWQVYSGGIEAHGVNPKAIEAMKEVGIDIS NHTSNLIDNTILNQSDLVVTLCSDADQNCPVLPPNVKKEHWGFDDPAGKPWSEFQRVRDE IKTAIESFKTR >gi|312979660|gb|ACRM01000005.1| GENE 17 15172 - 16461 1447 429 aa, chain - ## HITS:1 COG:SAP017 KEGG:ns NR:ns ## COG: SAP017 COG1055 # Protein_GI_number: 16119217 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Staphylococcus aureus N315 # 1 429 1 429 429 571 85.0 1e-163 MTILAITIFLLTLIFIIWQPKGLDIGITALIGAIIAIITGVVSLSDVIEVTGIVWNATLT FVAVILISLILDEIGFFEWAAIHMVRASNGHGFKMFVYIMLLGAIVAAFFANDGAALILT PIVLAMVRNLGFNQKVIFPFIIASGFIADTTSLPLIVSNLVNIVSADYFHIGFIEYVSRM MIPNLFSLLASIVVLWLYFRKVIPNHFEIKNLKTPNQAIKDPKLFKFSWIVLSILLIGYI VSEFIQIPVSIIACSIAFIFTVLAYQSSVVNTKQVIKGAPWNIVLFSIGMYLVVFGLKNV GITALLANMLSSISNYGLFSSVMGMGFISAFLSAIMNNMPTVLIDAIAIGQSATTGLIKE GMIYANIIGADLGPKITPIGSLATLLWLHVLTQKGVKISWGTYFKTGIVITIPVLFITLV GLYVTLIIF >gi|312979660|gb|ACRM01000005.1| GENE 18 16464 - 16778 90 104 aa, chain - ## HITS:1 COG:SAP016 KEGG:ns NR:ns ## COG: SAP016 COG0640 # Protein_GI_number: 16119216 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 104 1 104 104 130 62.0 7e-31 MNYKEISQYLKVMADSSRLEILDLLSCGELCACDLLEHFSFSQPTLSHHMKVLKDNNLIT SRKDGNKNLYKLNHDVLDNVTSRLTLLSSCTIPCICETVEKGEC >gi|312979660|gb|ACRM01000005.1| GENE 19 16775 - 16903 72 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRPRVYFKPVNNLGVKQVYNLSNDNKNYQRYKRFLVERKKKN >gi|312979660|gb|ACRM01000005.1| GENE 20 16918 - 18582 1705 554 aa, chain - ## HITS:1 COG:pli0037 KEGG:ns NR:ns ## COG: pli0037 COG0003 # Protein_GI_number: 18450319 # Func_class: P Inorganic ion transport and metabolism # Function: Oxyanion-translocating ATPase # Organism: Listeria innocua # 1 553 15 569 580 475 45.0 1e-134 MFFTGKGGVGKTTISSFIALNLAENGKKVALVSTDPASNLQDVFQMELSNKLTKYQPIPN LSIANFDPIAAADDYKAQSIEPYEGILPKDVLSEMKEQLSGSCTVEVAAFNEFTNFLSDK TLEQEFDFIIFDTAPTGHTLRMLELPSAWTDYLNTTSNDASCLGQLSGLNENRVKYNSAL EKLRNQDDTTMMLVARPTHSSIYEIQRAQQELQQLSISKFKVIINNYIEESHGLISSQMK SEQDKNINYFTEWLNNNHAYYVPYKKQKEEGIESLTNLLNDDNLIENDDFIVEDHPQFNK LIDEIENSKVQYLFTMGKGGVGKTTVATQLATTLSNKGYRVLLATTDPTKEINIETTSNL NTAYIDEEQALEKYKKEVLATVNDDTPQDDIDYIMEDLKSPCTEEIAFFKAFSDIMENQD DMDYVIVDTAPTGHTLLLLDSSENHHRELKKKSTQTTSNVETLLPKIQNKNLTQMIIVTL AEKTPYLESKRLVEDLNRANIGHNWWVVNQSLVTLNQRDDLFSNKKEDESFWINKIKNES LNNYFVIPYRISEY >gi|312979660|gb|ACRM01000005.1| GENE 21 18629 - 18976 534 115 aa, chain - ## HITS:1 COG:no KEGG:SH0112 NR:ns ## KEGG: SH0112 # Name: arsD # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 105 1 105 115 181 98.0 5e-45 MLNIEIYEEAMCCSTGVCGPEPDETLIKANQINEYLKQNQIEVQRYNMNNNPNEFIKNQE VIRLIQEKGDEVLPITFIEGGIAKTGAYITQEEADEIITVNQMRNGGCCGGDGCC >gi|312979660|gb|ACRM01000005.1| GENE 22 19257 - 19451 219 64 aa, chain + ## HITS:1 COG:no KEGG:SH0113 NR:ns ## KEGG: SH0113 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 64 1 64 64 101 100.0 7e-21 MRVNHSSTLTVGYFVSYLNLVMLSREINLKEATIYMEKEFFKGNINQYGESTKNNYKQAI QELK >gi|312979660|gb|ACRM01000005.1| GENE 23 19497 - 19817 282 106 aa, chain + ## HITS:1 COG:BS_yqcJ KEGG:ns NR:ns ## COG: BS_yqcJ COG0640 # Protein_GI_number: 16079634 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus subtilis # 9 103 2 94 105 82 44.0 3e-16 MEVIKAKTDMSEDQQFDFYENMFNALADKIRLKILNQISQSFNKSLCVCDLEELLDIKQS KLSYHLKKLVDANVLIAEKHGTWNYYKINEQQIQVVLNEDTCCKIL >gi|312979660|gb|ACRM01000005.1| GENE 24 19905 - 20789 1000 294 aa, chain + ## HITS:1 COG:Cj1560 KEGG:ns NR:ns ## COG: Cj1560 COG0701 # Protein_GI_number: 15792865 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Campylobacter jejuni # 54 293 10 274 274 145 35.0 6e-35 MLDSIMEFIKTFVMLFFELFILFIIVSFIVSIIQQIVSEEKIKYFLSKPNQAINYILGMA FGAMTPFCSCSTIPILAGLLNSKVPFGPAMSFLIASPLMNPLMIFMLWALLGWKVAVVYF IVLAIFSVLTGLVFSKMNLSKSYKGVNVKGDGFFANKNGSRFKQALNDAWAFLYPMIPYL FIGVFIGAFIYGFVPETFITKYASGGGIISVFIASIIGIPMYIRPETMLPIAEALASKGM SLGTVVALIIGGAGASIPEVVLLSKLFKKKFVISFVIAILVVAISTGLMVNIVI >gi|312979660|gb|ACRM01000005.1| GENE 25 20803 - 20931 111 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGVKDVLKKLKPQNQSCCSVEIEEKTEKNEKEQQDNNNCCNN >gi|312979660|gb|ACRM01000005.1| GENE 26 21641 - 23704 2160 687 aa, chain + ## HITS:1 COG:AF0152 KEGG:ns NR:ns ## COG: AF0152 COG2217 # Protein_GI_number: 11497769 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Archaeoglobus fulgidus # 30 685 43 690 690 570 45.0 1e-162 MKNNGEEHNHQNHMNHSNQMHHDNHASHHHHSGHAHHHGNFKVKFFVSLIFAIPIILLSP MMGVNLPFQFTFPGSEWVVLILSTILFFYGGKPFLSGGKDEIATKKPGMMTLVALGISVA YIYSLYAFYMNNFSSATGHTMDFFWELATLILIMLLGHWIEMNAVGNAGDALKKMAELLP NSAIKVMDNGQREEVKISDIMTDDIVEVKAGESIPTDGIIVQGQTSIDESLVTGESKKVQ KNQNDNVIGGSINGSGTIQVKVTAVGEDGYLSQVMGLVNQAQNDKSSAELLSDKVAGYLF YFAVSVGVISFIVWMLIQNDVDFALERLVTVLVIACPHALGLAIPLVTARSTSIGAHNGL IIKNRESVEIAQHIDYVMMDKTGTLTEGNFSVNHYESFKNDLSNDTILSLFASLESQSNH PLAISIVDFAKSKNVSFTNPQDVNNIPGVGLEGLIDNKTYKITNVSYLDKHKLNYDDDLF TKLAQQGNSISYLIEDQQVIGMIAQGDQIKESSKQMVADLLSRHITPVMLTGDNNEVAHA VAKELGISDVHAQLMPEDKESIIKDYQSDGNKVMMVGDGINDAPSLIRADIGIAIGAGTD VAVDSGDIILVKSNPSDIIHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGALAFIGLI LSPAVGAILMSLSTVIVAINAFTLKLK >gi|312979660|gb|ACRM01000005.1| GENE 27 23722 - 24267 696 181 aa, chain + ## HITS:1 COG:no KEGG:USA300HOU_0085 NR:ns ## KEGG: USA300HOU_0085 # Name: not_defined # Def: lipoprotein # Organism: S.aureus_USA300_TCH1516 # Pathway: not_defined # 1 181 1 181 181 302 98.0 4e-81 MVKKLFFMILGSLLILSACSNNDEKDKDTNDQKSESHMKHNDESKVPEDMTSTNEGEFKV GDKVTITAGHMPGMKGAEATVKGAYKTYAYVVSYKPTNGNEKVNNHKWVVNEEIKDAPKD GFSKGDTVKLEANHMSGMKGATANIDNVKKTTVYVVDYKSKDNGKIIKNHKWMTGNELKA R >gi|312979660|gb|ACRM01000005.1| GENE 28 24529 - 24996 726 155 aa, chain - ## HITS:1 COG:no KEGG:SH2643 NR:ns ## KEGG: SH2643 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 153 1 153 155 268 83.0 5e-71 MNDKTVYDVIDIGVNHLLSVYDNWNVEHVLDKENDVFPNTLHWQFGHVLTIFDSALSIGG QNAVDVAKYTKLFGYGSSPANWEGQDVPAIETIKENLKTLPERARKLTDEQLSQELNEPV AGCQTLNELLVLNAFHVPLHAGKIEEMTRVLKHDE >gi|312979660|gb|ACRM01000005.1| GENE 29 25546 - 26697 1345 383 aa, chain - ## HITS:1 COG:BH1829 KEGG:ns NR:ns ## COG: BH1829 COG1063 # Protein_GI_number: 15614392 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Bacillus halodurans # 1 382 1 378 378 455 55.0 1e-128 MKAVTYQGHKNMEVREVNDPTIEESTDAIIKITASGICGSDLHLYHQGDLFMDPGFVIGH EPMGIVEEVGKDVKTLKKGDRVVIPFNIGCGDCFYCNNHMESQCDNSNPSPANWKMDNGG LFGFGAMHGNHWGGQAEYLRVPFADFSSFKVPDSDLKDEQVLFLSDVVPTAYWSVEHAGV KSGDTVIVLGCGPIGLMAQKFAKLKGAERVIAIDNVEHRLNHAKKFNGAEVYNFSKEDNI GKLLRENTRGGADVVIDCVGMDGQVAQDDLEISSNSAQRGNISPIITAAESVRKFGTIQL TGIYATPADNFPIDLIFNRDVQVKSGQAPVIHQMPKLYEMIKNEVFDPTEIITHTMPLEE AKQAYDIFDQKKDNNIKVILKPQ >gi|312979660|gb|ACRM01000005.1| GENE 30 27396 - 27935 746 179 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475572|ref|ZP_04060290.1| ## NR: gi|228475572|ref|ZP_04060290.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 179 1 179 179 278 99.0 1e-73 MNELTQYLKEVAKQLEIQNAYSELNRASQNNENQATDKFNDTLKAIEDKYAYDSSPRVIP NRASLKTLNRVKAIEDKYAKAMKTLERLRKSRLSRNNKDSTQIENLIKQSENGFNDYHTR DDQYNFATSVAQELEKLKNEYIISPKEAKNIFGKYVFHTNEFHLSDHELYKIKFAYGLE >gi|312979660|gb|ACRM01000005.1| GENE 31 28259 - 29299 1576 346 aa, chain - ## HITS:1 COG:BS_adhA KEGG:ns NR:ns ## COG: BS_adhA COG1064 # Protein_GI_number: 16079755 # Func_class: R General function prediction only # Function: Zn-dependent alcohol dehydrogenases # Organism: Bacillus subtilis # 7 346 11 349 349 449 63.0 1e-126 MNVKARAVNGPDSEFFATEIQRRDLDKHDVLIEIKYAGICHSDIHTAREEWGPVDYPLVP GHEIAGIVKEVGPDVTKYKVGDRVGVGCMVDSCGECENCKNDEEQYCLNGNVGTYASTDK YGEKTQGGYSTHIVVQEDFVLRIPDNISLEVAAPLLCAGITTYSPLNHWKAYEGKKNVAI IGMGGLGHMAVQIAHAMGANVTVLSRTLNKKEDGLKFGASAYYATSDESTFKELAGSFDL IINTVSAKLDIDDYLKLLALDGTLVNVGAPAEPVSLQVFNLIGHRRSFAGSAIGGIKETQ DMLDFCSEHHIAPQIELITADDIDEAYEKVLASQVKYRFVIDISTM >gi|312979660|gb|ACRM01000005.1| GENE 32 29586 - 30227 940 213 aa, chain + ## HITS:1 COG:BS_ywnB KEGG:ns NR:ns ## COG: BS_ywnB COG2910 # Protein_GI_number: 16080715 # Func_class: R General function prediction only # Function: Putative NADH-flavin reductase # Organism: Bacillus subtilis # 1 213 1 213 213 250 60.0 2e-66 MNIGIIGATGKLGTKVLDEAQQRGHEVTAIVRNVAKLDADKDVKVIEKDVFDLTSDDIKD LDVVVNAFGAPLGEEEVHVEVGRVLINILKDVDTRAIIVGGAGSLFSDDAHTIHVMDTPD FPEIVKPTAKGSSRNLQDLQHAEGITWTFISPSAEFDFEGKRTGTYTLGKDQLLFNSKGN SYISYADFAIAIVDEAENKAHINERFTVVGEEE >gi|312979660|gb|ACRM01000005.1| GENE 33 30488 - 30979 626 163 aa, chain + ## HITS:1 COG:CAC0262 KEGG:ns NR:ns ## COG: CAC0262 COG3476 # Protein_GI_number: 15893554 # Func_class: T Signal transduction mechanisms # Function: Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) # Organism: Clostridium acetobutylicum # 2 156 11 167 170 79 31.0 3e-15 MINIKKVTRIVLPLAGGMVIGRLTAKAQNDYKHYEKPPFSPPAKVFPIVWPLLYTSMGVA YQLSYAHAAHKREKQSITRAHYAQLGLNYAWTILYFNLKLRKTSLIESYVLLAAGNITAH RFYASNKYAGLLMLPYVIWLSYASYLNGGNLILNEDKPGYTRD >gi|312979660|gb|ACRM01000005.1| GENE 34 31121 - 31321 402 66 aa, chain - ## HITS:1 COG:SA0747 KEGG:ns NR:ns ## COG: SA0747 COG1278 # Protein_GI_number: 15926469 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Staphylococcus aureus N315 # 1 64 1 64 66 102 89.0 2e-22 MNNGTVKWFNAEKGFGFIEREDGDDVFVHFSGIATDGYKTLEEGQKVEFDITEGQRGEQA TNVVPV >gi|312979660|gb|ACRM01000005.1| GENE 35 31625 - 33031 1357 468 aa, chain - ## HITS:1 COG:SA0248 KEGG:ns NR:ns ## COG: SA0248 COG0463 # Protein_GI_number: 15925961 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 14 217 3 201 573 112 35.0 2e-24 MKVIKSKEINHRPKVSVLISTYNKEKFINKTLDSVLKQSMDMRDFELIVVDDCSTDQTVD IVSKKIDSFSNYKFIQLDQNSGTPAKPRNLSIDLSKGKYIMFIDGDDWLPEDALEKLYTL LKTNKTDYATGLTKYVHSDRIARSGVALSKIAYNKVDLKHFRKSFYHLAPAGRMIKASVI KKNHIQFPEMIFGEDLQFFAEVFFNTKRISTTQDVVYCANRYDDNISLVKSEKSTHINRM KWQGEAYRHLMSKYKNNKLMPNLLYRIINKDVLEAKFYKKSFIKNINELLPIFQNIIHMV DEHFDALDYADDDLNRQAIKLIREGNKEDIISFVKFYLKKDDKPLHEKNDIYYYSFKGTH YKKRMHPTLLKISQENDKVFLKILSKNSELKYLEVKHRKNPTQFIVLDIKKHRFKSGEYT VQFTTKNLPNGKLALTVLDKDLNGSVIKSGMRFDFYETVGGNLGYIKK >gi|312979660|gb|ACRM01000005.1| GENE 36 33272 - 33361 78 29 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRLENKMNSDLFIGNASVSKETQKCYNYS >gi|312979660|gb|ACRM01000005.1| GENE 37 33449 - 34810 1754 453 aa, chain + ## HITS:1 COG:NMB0388 KEGG:ns NR:ns ## COG: NMB0388 COG0477 # Protein_GI_number: 15676302 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Neisseria meningitidis MC58 # 8 448 4 444 451 454 55.0 1e-127 MKDTDQIHTKNTEEQGITLPYLKKAVIFSITFGFFGVNMAFALQSAMMGRIFQTLGADPN NLGWFFILPPLAGMIVQPLIGYYSDRTWTRFGRRMPYLLIAGPIGAIVLVLLPNAGSFGF GYASLMALSFGAIMTLLMDLTSNACMQPYKMIIGDMVNEKQRDMAWSWQQIFSNLGGIIA TLLPFLLTMMGMSNVAPKGEVPMTVKIAYYIAAAVLLIASIWTVLSVKEYEPKTYNYYHG ISDDNRNEKLNLWQLLKTAPKQFWQISVVQFFNWFALMYLWTYSTGAIAKNVWNATDPSS AGYQAAGNWYGVLYCIQFLSSVIFGFVIAKSKPSQRKFWYSFGLIFGGLGLISMFFIHNQ WLLIISFIFIGINNLTMNTQPFTLLTEAIDGENSGAYLGLFNTSICLPQIVASVVSFALF PLLGSSMPAMLLFAGIMMLLGAISVKFINAKFE >gi|312979660|gb|ACRM01000005.1| GENE 38 35100 - 36299 1723 399 aa, chain + ## HITS:1 COG:SA0410 KEGG:ns NR:ns ## COG: SA0410 COG0523 # Protein_GI_number: 15926128 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Staphylococcus aureus N315 # 1 397 1 397 400 645 80.0 0 MSKIPVTVLSGYLGSGKTTLLNHILNHREGRRIAVIVNDMSEVNIDKDLVADGGGLSRTD EKLVELSNGCICCTLRDDLLKEVERLVHKGNIDYIVIESTGISEPVPVAQTFSYIDEAMG IDLTSICRLDTMVTVVDANRFVNDIHSEDLLVDRNQGADVTDERSIADLLIDQVEFCDVL VLNKTDLVTNEALDKLEHILRTLQPDAKIIKTTQSQVDINDVLDTGRFDFEKASNSAGWI KELTEGGHETHTPETEEYGMNSFVYSRRLPFHAKRFNDWLEQMPQNIVRSKGIVWLAQYN EVACLLSQAGSSCNISPVTYWVASMSKEKREEILAQRRDVAESWDIEYGDRNTQFVIIGT DLDQEKIEKELDECLVNSSEMNSDWHQLEDPYRWKIRKP >gi|312979660|gb|ACRM01000005.1| GENE 39 36620 - 36952 454 110 aa, chain - ## HITS:1 COG:no KEGG:SE2241 NR:ns ## KEGG: SE2241 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 7 109 15 118 119 106 56.0 2e-22 MPNENYRENDILGGISYLSVFFAPVLFPLIVWIVAQPPASTHARNALFNHIMSWVMVVLG LVTLSISPAFVNSEHGIGWIIAILIAVIFFIWALVLFLKNIIRGIQLMMP >gi|312979660|gb|ACRM01000005.1| GENE 40 37144 - 37608 457 154 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475439|ref|ZP_04060157.1| ## NR: gi|228475439|ref|ZP_04060157.1| hypothetical protein STAHO0001_0534 [Staphylococcus hominis SK119] # 1 154 1 154 154 223 98.0 2e-57 MRDFLKLLGALLTVIITFSISILFSFLIPLMVEGNILNMGKLNQPTFIMLWIIFSVIFNI IILILAFSLIQFSSDFVNKMKLIATLTFFVIITYTCFSHIDMQDLTDHLTLTSSKHAREV SIKLLPFILTISLGCYSAILSYLQHQIDKEERNI >gi|312979660|gb|ACRM01000005.1| GENE 41 37695 - 38207 833 170 aa, chain + ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 1 163 1 164 166 231 70.0 6e-61 MLAYKNILIAVDGSDEAEWAFNKAVDVAKRNDAKLTIVHVIDTRTYTAYEVYASQFDPSK EYSEKLLEGYKELAVKEGVTNVETRLELGPPKLLIPKNLANELNVDLIMCGASGLNAVER FMIGSVSEAIVRHAPCDVLVVRTEEIPEDFESKVATPEFRRRYFESSEHK >gi|312979660|gb|ACRM01000005.1| GENE 42 38222 - 38296 84 24 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTSFSRNSEDEVFYAEYKSSDDFR >gi|312979660|gb|ACRM01000005.1| GENE 43 38262 - 38333 73 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRSINQVMILDKIWYHFYLSVVF >gi|312979660|gb|ACRM01000005.1| GENE 44 38388 - 39266 1022 292 aa, chain + ## HITS:1 COG:SA0349 KEGG:ns NR:ns ## COG: SA0349 COG0668 # Protein_GI_number: 15926062 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Small-conductance mechanosensitive channel # Organism: Staphylococcus aureus N315 # 1 291 1 290 293 257 48.0 2e-68 MNQMKQLFIKFVEPLTKIEFYQNLLANILIIVAYILLGMIVIAISRKVVTKFFKVNEKKK TRYKIKRSETLSTLVQNLISYVVWFIVLTSILSRFGISVSAILAGAGVVGLAVGFGAQTV VKDIITGFFVIFEGQFDVSDYVQINSSGVTIAEGTVQTIGLRSTRIQSDTGEVYTLPNGT ISEIVNYSKTDVSPLIAIPISPNEDYDVIEKELKAFLPTLKDKYDMFVAAPDLLGLDSID GNEMVIKLLAHVKPGMHFPGQRLLRKEIISYFNDVGIHTPKPTLVKLEDEEK >gi|312979660|gb|ACRM01000005.1| GENE 45 39461 - 39661 272 66 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475761|ref|ZP_04060479.1| ## NR: gi|228475761|ref|ZP_04060479.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 66 1 66 66 109 100.0 6e-23 MWVKDFYYDGNAYINKNVWEYMCKDNVTFDKAIEALNLNYKDAVANERDIPNLDIERKNI VTSDFW >gi|312979660|gb|ACRM01000005.1| GENE 46 39721 - 39810 69 29 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIPAGKDGSEFQRVRDDIKNAIEQFKYRT >gi|312979660|gb|ACRM01000005.1| GENE 47 39924 - 40067 94 47 aa, chain - ## HITS:1 COG:SAP018 KEGG:ns NR:ns ## COG: SAP018 COG0394 # Protein_GI_number: 16119218 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 37 19 55 131 60 72.0 1e-09 MVEGFGKAILGDEWNVYSVGLETHDVNPKDIKAMKEVVSTFQIIPRI >gi|312979660|gb|ACRM01000005.1| GENE 48 40155 - 41702 2260 515 aa, chain - ## HITS:1 COG:SA0645 KEGG:ns NR:ns ## COG: SA0645 COG0471 # Protein_GI_number: 15926367 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 22 515 24 517 517 698 86.0 0 MTKGNLITDQSKKEKSNKGYKPLWIVISFIVLVIILLLPTSSSLPVMAKAALAILAFAVI MWVTEAVSYPVSATLILGLIILLLGFSPVQHLSEQLGHPKSGNAILKGSELLGTNNALSL AFSGFSTSAVALVTAALFLAVAMQETNLHKRLALYVLSIVGNKTKNIVVGAILVSIVLAF FVPSATARAGAVVPILLGMIAAFKVSKDSKLASLLIITSVQAVSIWNIGIKTAAAQNIVA INFINQNLGYNVSWGEWFLYAAPWSILMSIALYFIMMKVMPPERDAIEGGKELIKHDLNE LGPVSAREWRLIVISILLLIFWSTEKVLHPIDSASVTLIALGMMLMPKIGVITWKGVEKK IPWGTIIVFGVGISLGNVLLKTGAAQWLSDKTFGLMGLKELPIIATIALITLFNILIHLG FASATSLSSALIPVFISLTSTLGLGEHSIGFVLIQQFVISFGFLLPVSAPQNMLAYGTDT FTVKDFLKSGIPLTIIGYILVILFSLTYWKWLGLV >gi|312979660|gb|ACRM01000005.1| GENE 49 41958 - 42965 1010 335 aa, chain + ## HITS:1 COG:no KEGG:SH2661 NR:ns ## KEGG: SH2661 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 324 1 352 357 296 51.0 1e-78 MKCPNCGNSVEPNDAFCGECGQKLERHAQAVNNAEKEISQAQSQDSEPSHRTSRNEQSVA QQTTSKENQHLQNETTQDARTQQHPQIHQTSTYQNNQYQSSSNQQHTQNNQQQFDQFSNH AKEVTQESKGFFKSAFVAPDEVIKSKHAFSFKLLLSLLIAGFLVVAILLAMTIPSDAADI IGGKGSIIMSMIIGMILFLAVIVGATFAITRLVVRQSISFRKVLSDYVLINSVSVALLLI SFVLLTANSYVFSTSVFVLSILLFVISGIYMIAKYSVNSDVRFSSFYGVMIYIIIIFLFI SIFGESFLHQIINQFTQNIGDFLDNDFFNGGGYSY >gi|312979660|gb|ACRM01000005.1| GENE 50 42965 - 44290 1727 441 aa, chain + ## HITS:1 COG:SA2146 KEGG:ns NR:ns ## COG: SA2146 COG4640 # Protein_GI_number: 15927936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 358 1 355 460 133 28.0 6e-31 MKYCSNCGQPLREGVKVCTNCGAPVKATKDQKSNHDNQKNKTQHVHSNHTQKSNKKMWMI IGIIALLFIALIIAFSILKSQFSPEKQASNIAHAIKKDDEKALSKEVTSGDENLNKEEAR AYLDYIKEEDDLNNVANHVEQTAKDVKDKHYKNLSVDANGNNILNISKDGKKFVFFDNYN FNIPQRSISMYPNESGTITYDLNGNKKHISVDEGDSKSLGTFPIGNYNLKATKEMDDQKF NGALVIDMSQNGATATESFKQIRFNVYTEGDYMLDNVKVYANNKEIGEASSSETYGPYDP NEKVIVYAEGTYEGKTFKSDSVNVTSSSDDEDVTDVTVRFDDDAIDNYVDQKLESDSADD SSDDSEEVTRANVIDKVESYEGHTLDTDTYTYKEPEITDDGKWGFSFTDKDGDLAGSYTV DKDDGYVTEYDEHGDEVGSGY >gi|312979660|gb|ACRM01000005.1| GENE 51 44611 - 45678 876 355 aa, chain + ## HITS:1 COG:BS_yfiQ KEGG:ns NR:ns ## COG: BS_yfiQ COG3936 # Protein_GI_number: 16077903 # Func_class: G Carbohydrate transport and metabolism # Function: Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation # Organism: Bacillus subtilis # 8 337 6 345 362 144 30.0 4e-34 MKVYTSIIFWMRAIACLSVVMIHSITTTFYKFDMPNNGYILRLFQLLILYATPMFVFISE FLLAKQYKTQVKEGFVKQKLLTLGIPYILINFGLAYVYGHPDNFMDYLKSVEFMMFHGGT LTYFIVIIFQFYALHILFAKYLVKFNPFKIIIFSLIITTLFWAMRTFITPPDTIYVNWLW HREGWMIFIGWLSYFFLGFYMGYYYEELMRNIRKYTTHIISGTVIATLIVIFNYLSGFLT LVDSKRVDTPIYVTMIILLFFLILSYTKYVPKFFIFISNYSFSIYLVHYFFVHRLGTLHH HPIMNIIFTFTLTIVFSICIAYIVNQWKYGKYIVGGIGRMKYDTFYKSYKNNLVD >gi|312979660|gb|ACRM01000005.1| GENE 52 45984 - 46976 1307 330 aa, chain + ## HITS:1 COG:SA2194_1 KEGG:ns NR:ns ## COG: SA2194_1 COG0803 # Protein_GI_number: 15927984 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Staphylococcus aureus N315 # 1 326 1 320 330 295 59.0 7e-80 MIKKSLMLVFISILTLSLVACGTSNSGSDKDKKSENNEKLEVKTTVYPLKSFAQQIGGKY VHVESVYPNEMDPHTYEPSQKQMVDIGKSDLFVYTGDNLDPVAKKIANAMNDKNKTLSLE SSLNKADLLKGEEDEHEHGEHEEHGEHEEHEHHHGKYDPHVWLDPVLSQQFAKDIKDELV KKDAKHKDDYEKNYKKLVSDLKDLDKDMKRAVKGQEGKTVYISHDSIGYLADRYGFKQEG IENMNAEESSQKDLTTIVKQIKEDKVNYILAEENVSNKVADTVRKETHAKTISFYNMGSH TKQQDNDSNTYQSFMKKNIKAIEKALKNES >gi|312979660|gb|ACRM01000005.1| GENE 53 47162 - 47386 267 74 aa, chain + ## HITS:1 COG:no KEGG:SH0153 NR:ns ## KEGG: SH0153 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 73 1 73 74 76 65.0 3e-13 MNIYRLRYQHHKDIVDDNILTVFVLAKNEEDVRKFAKTVNYKVEDVKHTTYEAYEEAKAK GETYRLEHADTYIS >gi|312979660|gb|ACRM01000005.1| GENE 54 47571 - 48959 1735 462 aa, chain + ## HITS:1 COG:SA0180 KEGG:ns NR:ns ## COG: SA0180 COG1114 # Protein_GI_number: 15925890 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 11 457 1 447 449 541 72.0 1e-154 MTLRGKRGKTMKQKLTFKENLFIGSMLFGLFFGAGNLIFPLHLGQMAGANVLLANLGFLI TAIGLPFLGIIAIGISKTNGVFAISSRVSKIYAYIFTIGLYLVIGPFFALPRLATTSYEI AFSPFVSPSSGKWILPVFSMLFFIVAWFFARKPSKILDYIGKFLNPVFLILLGIVVVLAL IHPMGSISHAPISPDYNKSVLLKGFIDGYNTLDALASLAFGIIIVTTIKKLGITNPNDIA KETVKSGAISIIGMGVIYTLLAVMGTMSLGEFKVSENGGIALAQIAQHYLGDFGIIVLSL IIIVACLKTAIGLITAFSETFTELFPKTNYIVLATMVSVLAFIFANVGLTKIIMYSLPVL MFIYPLAITLILLTLVSHLFNNSSIVYRFTTLFTVIAAFFDGIKASPEPFVKTNFAQSLI GFAENYLPFFDIGMGWIVPALIGFIIGLIVYKVRGNKHEVQA >gi|312979660|gb|ACRM01000005.1| GENE 55 49097 - 51217 2413 706 aa, chain + ## HITS:1 COG:mcrB KEGG:ns NR:ns ## COG: mcrB COG1401 # Protein_GI_number: 16132167 # Func_class: V Defense mechanisms # Function: GTPase subunit of restriction endonuclease # Organism: Escherichia coli K12 # 426 701 174 461 465 284 52.0 4e-76 MDYKIDKTWAIFYKALAHKLLEYQNCRDQLIEKIQELYINTQINMPKLEINNEMIDMDPF TVFGLFNKSSMTKKNRIKIIEEMAKLFDVKADIPQNFDGIPTVMNLRATFYNFKNDREAQ DIENLWSLFEIALLYSADKSEDNENNFKRKFNQVMAQPGIGMGKLTSGLFWIDSDTFANL DSRAIWYIFEESEISTKYINFEVNLKQSLTATTYLMIIEKLKLFLKEDNYLNDFIDLSYE AWRKSKEVKQSSKVKDIDADKDLEVVNYWIYSPKPQDVDFASFIENGEMSIGYNELEDFS KYASKEEINQKLQQLNHNQHHYIHTVNAIWEFSKEMKRGDIVYVKKGQTDIVGWGVVSSN HQYKNDKNIIHLVWKEKGNWKIPIKTLNKTLTKITPYSETIRKFNELFSVEHSDGVVATQ TTYPIYTAEQFLDDVFMNEEDYDTLVQLIRRKKNVILQGPPGVGKTYAAKRLAYSMIGVK DKERVKLVQFHQSYSYEDFVMGYRPTETGFELRTGAFYNFCKQAEEDNEKDHFFIIDEIN RGNLSKIFGELFMLIENDKRGMEIELLYADEKFCVPDNVYIIGMMNTADRSLAMLDYALR RRFAFFDMNPAFETIQFKHYQENLKNPQFDALIDTIQALNVDIRDDDMLGEGFVIGHSYF SNMVDVTESELSNIIEFEMIPLLKEYWFDDPSKVDSWKVRLREAIQ >gi|312979660|gb|ACRM01000005.1| GENE 56 51214 - 52248 737 344 aa, chain + ## HITS:1 COG:mcrC KEGG:ns NR:ns ## COG: mcrC COG4268 # Protein_GI_number: 16132166 # Func_class: V Defense mechanisms # Function: McrBC 5-methylcytosine restriction system component # Organism: Escherichia coli K12 # 1 343 5 348 348 132 27.0 1e-30 MINIHNIYYMLSYAFTVLNKKGYQHIATESFNNVADLYSALLIKGVSSQLKYGLQHDYLE HNDSLNVIRGKINVTASIQQGTMMHKQLNCTYDEFSINTYMNQILKTTMLNVLKLDISRT RKKALKRLLIYFEQVDILDYRHIDWQLRFDRHHETYRMLMAICYLVTQGRIQSERSGSRE TMMFEDEQQMARLYERFVRAYYKKEFPQLKVTASHIPWAIDDDYRHMLPTMRSDVMLTYG KKCLIIDTKYYTSTLQQYFDTRTIHSGNLYQIFAYVKNEAFHLKSKQINVAGMLLYAKTD EQLVPDNTFQMSGNTISVKTLDLNQDFIHIAKQLDDIVYNYFKI >gi|312979660|gb|ACRM01000005.1| GENE 57 52344 - 53645 1428 433 aa, chain + ## HITS:1 COG:Cgl0697 KEGG:ns NR:ns ## COG: Cgl0697 COG2141 # Protein_GI_number: 19551947 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 2 426 4 426 438 343 44.0 3e-94 MKHMHLSVLAYSTGLHPASWRLPHSYVEEVGDIDFQIKLAKLAEKGKLDAFFLGDGQYIS GEETGHISYYFEPLTALAAISRETHSIGLIGTISSSFYEPYLAARMLSSLHQISHGRIGA NIVTSQFDLEAQNYSMQALPHLEKRYERADEFINVMKKLWESFTVEAIVNHKNSGIGLNH QYIHPLHYQGKYFQVAGAINIPTPKYGRPRLFQAGTSIPGRDLAVRHVDAIFSIAWNLQD GQQFRQDIHQRAMEANRQPPLVLPGLTVYVDENEKDAYKLKQQLDDMIPLEKRKKQLSKA IGLDISEWTLDEVVPSLPPYDALEKKVIKSVYEAVQRAVMTEHLTLRDVLDRFGTWVGHK TIVGTPEQVADEMIEWFEKEACDGFMLMSPTYPNAFEKFIDLVIPVLQARGVFRKEYESH MLKDHLNINTEKL >gi|312979660|gb|ACRM01000005.1| GENE 58 53724 - 55100 1929 458 aa, chain - ## HITS:1 COG:SA1519 KEGG:ns NR:ns ## COG: SA1519 COG1113 # Protein_GI_number: 15927274 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 4 453 3 451 453 535 62.0 1e-152 MAEDKLQRELSNRHIQLIAIGGAIGTGLFLGSGESVHLAGPSILLTYVIVGFVLFMFMRA MGEILLSNLGFKSFGDIAHHYIGPIAGFMVGWTYWLTWIISGMAEVTAVAKYVGYWYPTV PNWLTAAFTILVLVALNLFSAKLFGELEFWLSIIKVITIVALIIVGIVMIVLGMKTSYGQ ASVTNLWSRGGFFPNGIQGFLMAFQMAIFSFIGIELIGITAGETKNPHKTIPQAINNVPA RILIFYIGSLAVIMSVVPWDKLNPADSPYVKLFGLIGIPFAAGIINFVVLTAAASSCNSG IFANSRTMYGLAGRKQGPPFLHKTNKHGVPHYAILVTCGLLSISVILNAVFKDATKVFVQ ITIFSTVLNILIWTLIMIAYLNYVKRNPELHKDSKFKMPGGKYMAFAILAFFAFIFIILL INSSTRIGVLFIPVWAIILWIMYQKYKKESDKAKVKME >gi|312979660|gb|ACRM01000005.1| GENE 59 55407 - 56027 825 206 aa, chain + ## HITS:1 COG:L102062_2 KEGG:ns NR:ns ## COG: L102062_2 COG0778 # Protein_GI_number: 15673454 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Lactococcus lactis # 11 206 1 196 196 240 61.0 1e-63 MNDFNEILESRKSVKGFDPNYKIPHEEMNEIIRKATKAPSSVNMQPWRFVVVESDEAKAK LRPLIRFNTSQNDTSSAMIVIFGDLQCYEEGEFIYNKAVEEGHMPQEVKDQMLPFVMDTY KNSSREVMSDIVKVDSSLAAMQLMLVAKQYGYDTNPIGGFEHDKIGEAFGYDLERYVPVL IVAIGKKEKEPHTSYRMPVDKVVDYQ >gi|312979660|gb|ACRM01000005.1| GENE 60 56236 - 58245 2551 669 aa, chain + ## HITS:1 COG:BS_katB KEGG:ns NR:ns ## COG: BS_katB COG0753 # Protein_GI_number: 16080956 # Func_class: P Inorganic ion transport and metabolism # Function: Catalase # Organism: Bacillus subtilis # 5 669 10 685 686 763 56.0 0 MDQSNENKKQQQLDALRKNNDGTAMTTNSGMKVSEDENSLTVGDRGPTLLEDFHFREKMM HFDHERIPERVVHARGFGAHGEFQVYEDLSEYTSADFLTHPEKTTPVFVRFSTVQGSKGS PDTVRDIRGFATKFYTDEGNFDLVGNNAPVFFIQDAIKFPDFVHALKPEPHNEMPQGGSA HDTFWDFIGQNPESMHAVFWAMSDRGIPKNFRQQEGFGVHTFRLVNKEGQSYFVKFHWKP KQGLESLVWDEAQILHGKDIDFHRKDLYESIDKGDYPEWELGLQIIKPEQEFDFDFDILD PTKLWPEDQVPVKIVGKMTLNRNVDNVFAETEQVAFHPAHIVPGIDFSNDPLLQGRLFSY TDTQISRLGGPNFNQIPINRPVADVHNNQRDAMHQSYIHQGQTAYHKNGLNNNDPHTTPK EQGGFEHYHEKVEGYKVRQRSDSFKDYYTQAKLYKNSLTEAEQQHLADAFSFEIGKCKST EVKQNAVNQINKVDRKLAEYVANNVGVEVPAENEEVQSDAKDSQLTLEKFDIPLKGHSVA VLVNGDISAETLKSYAEVFVNNDLNYAFVGQTAKNLNDDEIGITETYSTASSTVFDSVIV LSDGKEMLPTAIDFVEMSYNHKKPVVITEEAKNVLQSNRIDLDAPGVVVSSEPQAILDAF KRYRYFDRK >gi|312979660|gb|ACRM01000005.1| GENE 61 58493 - 59023 661 176 aa, chain + ## HITS:1 COG:mll5435 KEGG:ns NR:ns ## COG: mll5435 COG0346 # Protein_GI_number: 13474533 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Mesorhizobium loti # 3 176 57 226 226 69 29.0 2e-12 MNRGINHIGLTVPSIEEATAFFKQGLDGKIAYDSQTKKDEPRGGEYVEHILGLEKGASII HKRMMVFGCGPNIEMFEFQHAQQQEPQSLQDIGFTHISFYIESDAFEHVLERVKQAGGKP LSEPHSNTKYEDTENNKTVYIRAPWGSLIELQTVPNGFYYPKDSEVKVFIPKSNDE >gi|312979660|gb|ACRM01000005.1| GENE 62 59150 - 59443 383 97 aa, chain + ## HITS:1 COG:no KEGG:SH0167 NR:ns ## KEGG: SH0167 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 77 1 77 95 79 70.0 4e-14 MIDIQIQKCDLIEVIESIINEKVEVDNQDACEYLATEIVNGLESYNSEETQANNLLGLNS ALRHEVKASNHSKKITLSANEEAFSSNDNNVDVRSSN >gi|312979660|gb|ACRM01000005.1| GENE 63 59660 - 61927 3199 755 aa, chain - ## HITS:1 COG:SA2463_2 KEGG:ns NR:ns ## COG: SA2463_2 COG1075 # Protein_GI_number: 15928257 # Func_class: R General function prediction only # Function: Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 378 755 1 379 379 618 82.0 1e-176 MKKSENRYSIRKFSVGASSILVATLLFMGGGAAQAAETHQEVGNPESAVAQSIGDHKKQS DNQETQQDNVQSDEQATSTSQSVTNENEAQRLHNENKASTQVKDSTDQLNTNERTTDNIV THQSTKHSVAETEEASTTKTSSDDPESVSTKEEQPSLETQESTKNTIQKDTLASDKKDNT TETSTTKNQAHSSENVTNESPTEEKTTTQTTTAETNTSSTKDNTSKTTDSHSTKTSQSTP LTESKELTPSKTQQDSNVNQDAIKNNDVEAPSTGKTNDTVDTTETKQTVTAKQPTDPAAP TVNTLNTKDEAISIDGTTNETVGHKDAKDQKNSQAGLETLANNAVATTNNTSQQQGTTET KDQTNKVAKHGQYKNQDPIILVHGFNGFTDDINPNVLSHYWGGDKLNIRQDLEQNGYNAY EASISAFGSNYDRAVELYYYIKGGTVDYGAAHAERYGHERYGKTYEGVYKDWQPGQKVHL VGHSMGGQTVRQLEELLRNGSQEEIEYQKTHGGDISPLLQGGHDNMVSSITTLGTPHNGT HAADELGNEALVRQVVFDLGKRLGNKNSRVDFGLSQWGLKQQPGESYISYLLRVKNSKLW QSKDNGFYDLTRDGATDLNRKTSLNPNIVYKTYTAEATHPTLIGKQKADYNMFLPFTVTG NVIGKATEKEWRENDGLVSVISSQHPFNQAYTEATDTNQKGIWQVTPTKHDWDHVDFVGQ DSTDTKRSREELQQFWYDLADDLVQTEALTSTNEA >gi|312979660|gb|ACRM01000005.1| GENE 64 62321 - 63832 1668 503 aa, chain - ## HITS:1 COG:BS_yubD KEGG:ns NR:ns ## COG: BS_yubD COG0477 # Protein_GI_number: 16080165 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 16 486 8 464 511 149 23.0 1e-35 MDFWSSKKGKMLEISILGILTIFGIGSQYFSNLAYSLNQGILQTSFSIGSQYLIIPSVIA NFAFALGVPLGHTLTHKFGFRRNFLFFVTLFLIGSIIGLFSFDLIILSIAKGLQSLSTGV LFFTLLPKLFLNFPRQYRNVFLLMVIVGLFGANALGGLSGSLSLELDRWHWIFIINIISA ILCLILGSIFLTKEEYQHSEPIHISRPMIISLVLSTIALTLPMGMLTQKGYGSLWVWPIL IIAILFIVNFVVFNHEAKHPFVHFKTLLTKKPFVGATMAISSHLALLCGIAGINVYIIRI LKLPFTISLHFYLFFFIGVIVTGFIKMFIYSAVGAGVLGTLGSSALLYVSVHWMILHDIV NIHLLYIQGFLLGFGASMTLVSGAMATLLDGDLLQAGQRSQTMHTIRNYAAAFLVPVIAY LIKYNIQKGTQSVYTENITNTSIYIKRIKDIAIDADHKVFLLMIIFNSIMLVSSIIQMSL GKGRRITPPRSPKNPELHLNIHK >gi|312979660|gb|ACRM01000005.1| GENE 65 64294 - 65166 1176 290 aa, chain + ## HITS:1 COG:no KEGG:SH0170 NR:ns ## KEGG: SH0170 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 290 1 287 287 394 73.0 1e-108 MLKSKFGKSLVASVIIGASVLGYSAQHQEAKAVETNYYYDGIQRGSYQAYLKAKKISNSS ISIQRYPNASQNNLKAIGRVSNLNGWKKGSRDASVRKQDSMGTGTVIGAHTFVTNAHVID DQYGRAAAPKYIKFQMNRDGSRMPYVFQATEVIKVPQYDIAVVHTKQNMSKYVKPVKIAT DSEIKQLKFNSPLYSLGYPWQYNDNTKAYFNKLRVTQFSTNGTEIQTKDIFRSGASGSPM LNSTFTKMYGLRTYGYNLMGGSTDAYAKQEMSGGESFKGYAGRFVRQHIK >gi|312979660|gb|ACRM01000005.1| GENE 66 65288 - 66211 1203 307 aa, chain + ## HITS:1 COG:no KEGG:SE0149 NR:ns ## KEGG: SE0149 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 307 1 300 300 291 56.0 2e-77 MKKHYLAIGAITATTLLAGCDLGDMIGLNNSSEKSEHTTSQSNQPSNKNTSDNHKNNTQQ DSNKSSNDSNQRENKTNSNIDNLSQAEKVALALNDPSVSDYAITANELRNHSYFANYNGG GEQKSIDTYQLEALDNGVEGAPSNMKFYATQPAKGSFSTLIGVGGDRVTIIATQSPGTYS QFVNSQTGHELDLHTLLEKYGENSNYKEIVNQIVFTNGKTYTDSNNTTSESSSSTEKVTR ANVIDKVEDYEGHQLDTDTYTYKEPEQDENGDWGFSILDKNGDLVGSYIVTSDGVVTKYD EHGDPID >gi|312979660|gb|ACRM01000005.1| GENE 67 66238 - 67113 851 291 aa, chain - ## HITS:1 COG:no KEGG:SH0173 NR:ns ## KEGG: SH0173 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 286 1 286 287 377 69.0 1e-103 MDKATRILNMLTLLLNGHVVTQEDLDRFTNVSKKSIQRDINTINTFFYESHFWRSNHTKI VYNYQLGGYELTHDTTNKQSLGVLSLLIKLQSLTPILHYDIYKFFLNALSSVRIEDKHIL MTMLHQFKVRDDLLPGKLLMDLQKAIVNKHRVRIEVDHNKITIKPLSILYMHYDYWFTYE FQHKIHTVSLKSISSLHVLDTKFSKDFANNAVLFEMSTTIWNQFKQQFSIKEIVSRNEDT ILAWVNCTRFDAYYIAYQLAPLAKIIAPESYIDSFIERLDEIKRTYTENNS >gi|312979660|gb|ACRM01000005.1| GENE 68 67232 - 68086 1036 284 aa, chain - ## HITS:1 COG:SA2393 KEGG:ns NR:ns ## COG: SA2393 COG1893 # Protein_GI_number: 15928186 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Staphylococcus aureus N315 # 1 278 2 283 286 303 57.0 2e-82 MRIAIIGPGAVGTTIAYELQQVLPHITLLGRTNKSIHFQPANQHVMVKDIKSMADPFDVI IVAVKTHQLESLVPDLNRLTHDETTIILAQNGYGLRSTLPFKYVYQAVVYISGQKKDDEV IHFRDYRLHIQHDRRTEQLKRYLEHTKIELILEDHIETTIWYKLLVNLGINSMTALGGNT AQILKISEVYQLCTRLLEEGKQVAMAEGITLPNTIVADIMHIYAGYPDHMGTSMYYDVMN HQPLEVEAIQGFIYRKARTHHLSTPSLDTVYALLRSHHSLSIQY >gi|312979660|gb|ACRM01000005.1| GENE 69 68169 - 68996 1356 275 aa, chain + ## HITS:1 COG:SA2392 KEGG:ns NR:ns ## COG: SA2392 COG0413 # Protein_GI_number: 15928185 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate hydroxymethyltransferase # Organism: Staphylococcus aureus N315 # 1 272 1 272 272 400 76.0 1e-111 MKNLSKLMEMKQNGTKISMVTAYDYPSAKQAQQANIDMILVGDSLGMTVLGYDTTTQVTL DDMIHHGKAVRRGADDTFIVVDLPIGAVGVSAEHDLNHAITLYQQTNANALKAEGAHLTD FIKKSTQIGIPIVAHLGLMPQSVGVMGYKLQGGTKDAAEQLIRDAHAVQEAGAVALVLEA IPSDLAGLISKQLDIPVIGIGAGKDTDGQVLVYHDMLNYGVERYAKFVKQFADLSVGIDG MKQYDKEVKAGAFPAEAHTYKKKVLDEVNKNDTSN >gi|312979660|gb|ACRM01000005.1| GENE 70 68980 - 69831 1138 283 aa, chain + ## HITS:1 COG:SA2391 KEGG:ns NR:ns ## COG: SA2391 COG0414 # Protein_GI_number: 15928184 # Func_class: H Coenzyme transport and metabolism # Function: Panthothenate synthetase # Organism: Staphylococcus aureus N315 # 1 283 1 283 283 398 68.0 1e-111 MTQVINTVKEMQAIAQHIKASGQSIGFIPTMGALHEGHLSMMRRSVEENDVTIISVFVNP LQFGPNEDYDAYPRQIDKDVSLVKVIHVDYVFHPSVEEMYPDELGVTLKVGRLGEVLEGP QRPGHFDGVVTVVNKLFNIVTPNKAYFGKKDAQQLAIIEKMVKDFNHPIEIVGVDIVRED DGLARSSRNVYLTDEERKEAVHLSKSLTLAKDMYEEGERRSHMLVGAIKTYLQEHTSGHI DEVAIYSYPELEVVNEINGQIFIALAVKFSKARLIDNIILGSK >gi|312979660|gb|ACRM01000005.1| GENE 71 69837 - 70220 488 127 aa, chain + ## HITS:1 COG:SA2390 KEGG:ns NR:ns ## COG: SA2390 COG0853 # Protein_GI_number: 15928183 # Func_class: H Coenzyme transport and metabolism # Function: Aspartate 1-decarboxylase # Organism: Staphylococcus aureus N315 # 5 126 1 122 123 182 86.0 1e-46 MIRTMMNSKIHRARVTESNLNYVGSITIDADILDAVDILPNEKVAIVNNNNGARFETYVI AGERGSGKICLNGAASRLVEVDDIVIIMTYVQLDERELIDHAPKVAIMNENNEIIQMIHE KENTIIK >gi|312979660|gb|ACRM01000005.1| GENE 72 70355 - 71806 1878 483 aa, chain + ## HITS:1 COG:BH0414 KEGG:ns NR:ns ## COG: BH0414 COG0659 # Protein_GI_number: 15612977 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Bacillus halodurans # 3 479 4 482 486 462 54.0 1e-129 MTETLKDEWLKNPGKNIMAGIVVALALIPEAIAFSIIAGVDPMVGLYAAFIIATVTAIVG GRPAMISGATAAVALVVTPLVKDYGVQYLFAATILMGLIQLLLGILKVGRLLKFIPRSVM IGFVNALGIMIFLSQVEHIFGISIDTYIYVTITLLIVFILPKFFTIVPAPLIAIVVLTIL YLTMGANIHTVGDLGTIKQALPHFTIPHVPFNLETLKIIFPYSLSMAIVGLVESLLTAKI VDDYTNTYSNKNREARGQGIANIITALFGGMGGCAMIGQSGINVRSGANSRLSTLTAGLF LIFMIMVLGHIVIQIPMPVLAGIMVMVSVGTIDWGSFKYIKHAPKTDVFVMILTVIIVLF THNLALGVVIGIVFSALFFATKISNIKVETRKENNQYFIVFKGPIFFVSIDTMMTQIDFN VQRETIQLDFSDAHIWDDSAVDAIETIVRKLEDKHNEVYVKNLNKDSRKVVSELSQLKEN QLI >gi|312979660|gb|ACRM01000005.1| GENE 73 71857 - 72537 973 226 aa, chain - ## HITS:1 COG:SP0629 KEGG:ns NR:ns ## COG: SP0629 COG1876 # Protein_GI_number: 15900536 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Streptococcus pneumoniae TIGR4 # 18 226 19 232 238 156 44.0 3e-38 MKKFSAILITSALLLSACSHSNDNNGKNENNTKQTSQPNKSDDKQQRHTKVIKNGRTYVD GVLIVNKDIGLPSNYNPGEDPKAQQALQQLFSAAQKDGIQLYKMSGYRSYPTQVQLYNRY VARDGKKAADKYSARPGYSEHQTGLTFDIGGVNSDKNLYASFGKTKEGQWIAKNAHKYGF IVRYPKGKEKITGYQYEPWHLRYLGKDTATKVYQSGKTLEEYVGLK >gi|312979660|gb|ACRM01000005.1| GENE 74 72742 - 73617 1050 291 aa, chain + ## HITS:1 COG:no KEGG:SH0194 NR:ns ## KEGG: SH0194 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 290 1 287 288 295 55.0 1e-78 MKKILFLGSIMMMLLAACSTHESSKEDHKSKSNQNNVQKAKKNESDKKDETSSTNTSKLS TKERLALAFCIDGVDQYTLTKNEILTGIYEYRLPTGKHNYKLVDFTLVKMKQPVKHAPKH MQFFTVYPDKSTYQALIGVNKDTVYVGRMQKGTLDYNDLLDKGKEASLEEVYKHNKDNKA LPELISKMHISNALPDSANDKGNPLASNDLEKSGSVNTRYRNEVYQLISDFDEVELKKSG YLWDDVKMTDHNGNWIVNYRNKKGEILGTYRTKHGKIQKLDEKGNIVKEEK >gi|312979660|gb|ACRM01000005.1| GENE 75 73745 - 74206 330 153 aa, chain + ## HITS:1 COG:SAP017 KEGG:ns NR:ns ## COG: SAP017 COG1055 # Protein_GI_number: 16119217 # Func_class: P Inorganic ion transport and metabolism # Function: Na+/H+ antiporter NhaD and related arsenite permeases # Organism: Staphylococcus aureus N315 # 1 122 284 405 429 149 70.0 2e-36 MIFSIGMYLVVFELKNVGITSMLGQIFSAISNHGLCTSIMVVGFISAILSYMMNNLPTVL IDAIVIRQSQAAHILKEDMIYANMIESGLCPKITPIGSLATLLWLYVLSQKAIKISWGIY FKNRYCHNGSSFIYDFISIIYYITALIKKPKIF >gi|312979660|gb|ACRM01000005.1| GENE 76 74491 - 75885 1663 464 aa, chain + ## HITS:1 COG:BH2308 KEGG:ns NR:ns ## COG: BH2308 COG1288 # Protein_GI_number: 15614871 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Bacillus halodurans # 10 464 17 467 470 280 34.0 4e-75 MEQKKEGKFKLKTPHTYAILMFIILVAWLMTYIIPAGEYVREKKNGQTLVVSGTYHTISS EHINFLNIFRAIPEGLISGGEIVFYVFLVGGAFGIVHKTGAFENGVNKAMRTLGRANFLM IPLTMTAFSILGFTIGLAEETIIFVPIGIIIARTLGYDALTGAAMVILGAASGFSGGMLN PFTVGVAQTVAELPMFSGWGLRTIIYLLILATAITTVMVYANKVKQDKTKSIVYHLEQEE GLIQQDIEYQHFSKKQAGSLIIIMATIIFNVFGIFKFGWGFNEMSANFLLAGILAGFIGG LGFNGTFDALVEGMQNILFGAMIVGFAKGIIVLLENGKIIDTIVHGMTTLLTDVPSSLVI IAMFILQFMLNFFIPSGSGQALTTMPLMVPISDLLHINRQLTVLAFQYGDAISNILFPTS AILMGALAVGKISYTEWVKFVWKPILIWIMICSVAMSIALVIGY >gi|312979660|gb|ACRM01000005.1| GENE 77 76187 - 76543 608 118 aa, chain + ## HITS:1 COG:SA0122 KEGG:ns NR:ns ## COG: SA0122 COG1028 # Protein_GI_number: 15925830 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 3 118 2 117 258 136 63.0 7e-33 MGTSKKVALVTGAAQGIGFKIAERLFNDGFNVAIVDFNEEGAKKAAEALSKEDQEAVAFR ADVSDRENVFDVTRKVVEHFGELNVVVNNAGLGSTTPIHTVTPEQFNQVIGVNVGGVF >gi|312979660|gb|ACRM01000005.1| GENE 78 76763 - 76966 349 67 aa, chain + ## HITS:1 COG:SA0122 KEGG:ns NR:ns ## COG: SA0122 COG1028 # Protein_GI_number: 15925830 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 66 192 257 258 99 69.0 1e-21 MEGIAKKLAKENNQPEEWGWKQFTDQITLKRLSKPEDVANVVGFLASRDSDYITGQTIIV DGGMRLH >gi|312979660|gb|ACRM01000005.1| GENE 79 77396 - 77635 230 79 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475665|ref|ZP_04060383.1| ## NR: gi|228475665|ref|ZP_04060383.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 79 1 79 79 82 97.0 1e-14 MRLSNMNIVSGILCILSFLLAVSITFTDMFWYLPGFFVMLLSVVSSVVGLMSGSQVFNSI TLFLTIIFFLIFSSPLLLA >gi|312979660|gb|ACRM01000005.1| GENE 80 77788 - 79131 1930 447 aa, chain + ## HITS:1 COG:BS_yxcC KEGG:ns NR:ns ## COG: BS_yxcC COG0477 # Protein_GI_number: 16081032 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 5 438 7 441 461 438 54.0 1e-123 MKVNKYLIFILGALGGLLYGYDNGIISGALLYIPKDIPLHNGAIEGLVVSSMLFGAIVGA GGSGPLSDRIGRRRLVLFIALVFIVGSLVLAFSTNIVMLVIGRAIVGLAVGGSMSTVPVY LTEMAPTELRGSLGSLNQLMITIGILAAYLVNYAFADMGAWRWMLGLAVVPSLILLIGVA FMPESPRWLLENRSEKAARDVMKITYNPDAIDAEIKEMKEIASQSESTFSVIKSPWLRPT LIIGCIFAIFQQFIGINAVIFYAPTIFTKAGLGGSASIIGTVGIGVVNVLVTILALFIVD RVDRKKLLVIGNIGMIASLVIMAMLIWSIGIQSSAWVIIICLSLFIVFFGISWGPVLWVM LPELFPTRARGAATGIAALVLNFGTLIVAQLFPILNHNLDTEWVFLIFAAIGVLAMFFVI KYLPETRGRSLAEIEHELRLRTGVKSE >gi|312979660|gb|ACRM01000005.1| GENE 81 79232 - 80935 2252 567 aa, chain + ## HITS:1 COG:VCA0786 KEGG:ns NR:ns ## COG: VCA0786 COG3044 # Protein_GI_number: 15601541 # Func_class: R General function prediction only # Function: Predicted ATPase of the ABC class # Organism: Vibrio cholerae # 11 567 8 548 549 387 40.0 1e-107 MKQSKDLERLLKSLDGQKYGAYKRMKGIYQFDQFRLAIDHVQVDPFAPPSKMRVIIGKHE TEIPNELLDTKDKRIATSDFLTRTVDTQLKHFNRTVKGSGKNGKIFIDHPGQEILERTSV VINDKEIEIRIEVGLPAAGRKILGKAASHTIIQGIPRMVEKAIQYENLNQQALNEQVALK LDQTYIRQQLETEHLVAFVANGSILPRKSGVSDAPMKGAIQFTSPKKFEHTFNLPSGRAV TGMAIPQGITLIVGGGYHGKSTLLEALERSVYDHIQHDGREFVVTQHDAMKIRAEDGRNV ENVDISPFIDNLPGKKDTTHFSTENASGSTSQATNVIEALETESSLLLVDEDTSATNFMI RDGRMQQLIAPEKEPITPFSNKVKSLYEDYSVSTILIVGGSGDYFDVADQVLMMDEYHLK DVTEEAKEIANTDGYKREIDGNQSFGVLSHRIPLTDSFSKKGKEDRFKSKGLHSIMYGHE PINLIGLEQLVDDSQTNAITVMLDYFRRHGINNQNSIIQATNEMYRLIEHEGLEALSHFN GHPGHLALPRKQEFIGTLNRYRGLKVK >gi|312979660|gb|ACRM01000005.1| GENE 82 81305 - 81745 508 146 aa, chain + ## HITS:1 COG:lin2303 KEGG:ns NR:ns ## COG: lin2303 COG1846 # Protein_GI_number: 16801367 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Listeria innocua # 1 140 1 141 150 107 43.0 8e-24 MKKDEMTLANQLCFSAYNVSRLFAQFYEQQLRPFGLTYSQYLVLLALWEEDNRTLHEIGR QLDLSSNTLTPLLKRLEQSGWVIRERSETDKRQLMVTLTEKAHQQQEAVFEAVAECLPSN FDKTKYNQAKDVLEQLEHGLKQLNKK >gi|312979660|gb|ACRM01000005.1| GENE 83 81763 - 83106 422 447 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 440 1 446 458 167 26 3e-40 MKTYDVTFIGSGHAAWHAALTLKHAGKEVAIIEKERIAGTCTNWGCNAKILLENPFEVLE EATHYPGIVESQNLKVNWSNLMDYKHKVIDPMAGQLKSLFEQQGIDVYDGTGVIKNEHTV EVNGESIETENIVVATGQHSNKLPIEGKEYTHDSRDFLSMEDTPKSITFIGGGIISIEFA SIMIKTGADVHVVHHTDEILPGFNRNHVDKLVKKLEDEGVKFYLNENTAAVKKEGDAFTL TTESGLSINTEYVLDATGRVPNVEGIGLENVGINYSKKGIEVDEYLRTNVKNIYASGDVL DKTIPKLTPTATFESNYIAAHILGMVQDEIKYPAIPSVLYSLPRLSQIGVTVEDAKENDQ YTVKHVPFGKQMVFEYKNETEAEMYIVLDEHKHLVGAEIYADAANDLVNLLVFIINQRMT AEDLNQLIFAFPGASSGVIDLLKMNML >gi|312979660|gb|ACRM01000005.1| GENE 84 83241 - 84098 1272 285 aa, chain + ## HITS:1 COG:SA1979 KEGG:ns NR:ns ## COG: SA1979 COG4594 # Protein_GI_number: 15927757 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-citrate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 6 285 43 323 327 211 39.0 2e-54 MGKEFESNGVNVEIPDELESVVALEYSFVEALAKLELNVTGIADDKDKNNLENSIKHLVG NYTSVGSRLEPDAELIKKAEPQLILADKTRHESIFEKLNAAAPTVLLESFDANYDQSIET FKQIAELVSKEDKGRELVVQHNEKVEDLSKDIKLDKDLSTIAAVPTHDGLYVHASHSYVG QFLQKVGFNGSVPKDMENHLPEYMGADYLKVDTDRFASFNPERILIMVDEDNKTDYEKLK ETEDWLNIEAVRNQRVHDVNRERWAKYRGLIASELILEDLTNIEE >gi|312979660|gb|ACRM01000005.1| GENE 85 84174 - 85169 1183 331 aa, chain - ## HITS:1 COG:SA0329 KEGG:ns NR:ns ## COG: SA0329 COG2855 # Protein_GI_number: 15926042 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 330 1 330 331 320 61.0 3e-87 MKSITQPSFMKGIMFTFMIAMISYILAKFPILHTIGALAIAIIFAMLYRQVMGYPEHIRP GITFASKRLLKFAIILYGLKLNMGDILGKGWKLLLIDIIVIIFSISLTLILNQIIKGNQD ISILLGIGTGVCGAAAIAATAPILKSKEKDIAISVGIIALVGTIFALIYTAIEAIFNIPT ITYGAWAGVSLHEIAHVVLAADIGGPEAMTFALLGKLGRVFLLIPLSIGLILYMRYKSHS SQVQQKIDIPYFLIGFIIMAFINTCVPIPSLLMNIINVITTVCMLMAMVALGLNIVLKEV ISKALKPFIVICITSICLSGVTLLVTSIIFK >gi|312979660|gb|ACRM01000005.1| GENE 86 85283 - 86104 707 273 aa, chain + ## HITS:1 COG:PA3398 KEGG:ns NR:ns ## COG: PA3398 COG0583 # Protein_GI_number: 15598594 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Pseudomonas aeruginosa # 5 270 9 288 308 106 27.0 6e-23 MDPYKVLIEVIKTESFTRAAENLYTSQPSVSRDIKRLELKYNVKIFEFKSPYLKLTRDGE KLLQYALQRESIEQELWQNLTSESEIISGTLTIGSSYTYGEYLLSEQLTSLMQQYPKLHI HLRVNNSDSVINDIKHNRVDIGIVEKEIQDNVIKCKKIIEDEMVYIYKKSVQPRMDICFV REKGSGTRFYQEVGLSELKLNPYLIEINNIKIIKQMVEAGNGFAIISKSAIHPEDYEKLM ITTLNVKRHYYLAQHVDKYIDKNIRAVIEMIMK >gi|312979660|gb|ACRM01000005.1| GENE 87 86175 - 86861 956 228 aa, chain - ## HITS:1 COG:BMEII1016 KEGG:ns NR:ns ## COG: BMEII1016 COG0693 # Protein_GI_number: 17989361 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Brucella melitensis # 3 227 4 232 235 201 43.0 1e-51 MSKALVVVTSVSKYPDMNRPTGLWLGEVVHFADVLYKNGYDIDYISPEGGYTAIDPASLQ EDMMSELDWKYYQDKDFMTRLGSTLTPDAVRAEDYDIIYYAGGHGTIWDFKDNKDLQELT RKIYENNGAVSSVCHGAIGLLNVTDSEGNSIINGKTVTGFSNTEEEAVGLADKVPYLTED ELKNRGAHYEKGDNWSQFAVIDGHIITGQNPQSGKAVAEKFLELKNNK >gi|312979660|gb|ACRM01000005.1| GENE 88 86945 - 87370 363 141 aa, chain - ## HITS:1 COG:alr0113 KEGG:ns NR:ns ## COG: alr0113 COG0454 # Protein_GI_number: 17227609 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Nostoc sp. PCC 7120 # 5 118 49 168 183 60 30.0 8e-10 MNIELYSEYNEKYLNDIYQIYNSVGWANHNKNNINEIFNNSTFVTLASYNDKIIGFARAL SDGVFNAAIYDLVVKKEFQSQYIGIQILNHILTQIGSLSCVHLISTTNNVKFYEKAGFRK LKTGMVLYQSESLKMEYTEKT >gi|312979660|gb|ACRM01000005.1| GENE 89 87605 - 88117 919 170 aa, chain + ## HITS:1 COG:SA2491 KEGG:ns NR:ns ## COG: SA2491 COG3247 # Protein_GI_number: 15928285 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 170 1 170 170 142 58.0 4e-34 MAQDSGKLNWSSLIIGTLLLIIAVVIFSNPVQNFYTLTWLIGLLIMIGGVIQLLFRRTAK KLVGVNTKLILINGIIDLIFGILVVFNVGASSVFFVFMFAFWFIFSSVIGLFTLSQQHQL RGLSIIVNLLGIILGIILLFNPMMGMIFVSTLIAFTFAVLGVTYVIDGLA >gi|312979660|gb|ACRM01000005.1| GENE 90 88295 - 89491 1556 398 aa, chain + ## HITS:1 COG:BS_patB KEGG:ns NR:ns ## COG: BS_patB COG1168 # Protein_GI_number: 16080196 # Func_class: E Amino acid transport and metabolism # Function: Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities # Organism: Bacillus subtilis # 4 397 2 386 387 243 35.0 4e-64 MNYNFDEIIDRRYTNAMNVEGYKGYLFSDADTSDLKDNDELIRMWVADMDFGTPEVVLNA IRERLNKKILGYTNVFGSEYYEAFVSWTKKRYGFTFPQEHLVFSHGIVAGLIELVGYICD KDDKALIVTPSYGPFKMACDKNHISTVYSPLINHHGYYEIDFDDVRKKVETENIKLCIFA NPHNPTGRVWSEEELATLGQIMKENDVWLISDEIHCDIKRSGQSHIPFAKAVPDYDKIIT TMSQSKAFNIAGLMFSNIIIQNESLLKTWNTHHFGTENPLSVVATQAAYEKGEGWLQAMN HYLDDNFNYLADFLEKELPHAEFKIPEATYLAWVDLSYYIKEKDIDESMAKFFIKNAGVI IEGAEQFVHNAEGHIRINIAVPREVMKKGLQKIKAALV >gi|312979660|gb|ACRM01000005.1| GENE 91 89508 - 89915 427 135 aa, chain + ## HITS:1 COG:BH0424 KEGG:ns NR:ns ## COG: BH0424 COG2128 # Protein_GI_number: 15612987 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 135 1 135 138 139 47.0 1e-33 MAIIEPSHISHTPFQQLLGHHEDIMKTWTALSDTLENTSALNAELKEEIRRMLAQKNGCQ YCKAKGKPTGSLTDEKSAICIGFTEVYIKLGDQIPTTYTEVLKSHLSDKEIIELITFITF TNAQQQFGAMMKLEP >gi|312979660|gb|ACRM01000005.1| GENE 92 89961 - 90578 835 205 aa, chain - ## HITS:1 COG:SAP005 KEGG:ns NR:ns ## COG: SAP005 COG4300 # Protein_GI_number: 16119205 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Staphylococcus aureus N315 # 1 205 1 205 205 274 80.0 8e-74 MIQTIITAAILYIATAVDLLVILLIFFARAQTKKEYRNIYIGQYVGSVTLIVVSLFFAFV LNYVPEKWILGLLGLIPIYLGLKVAIFDDCEGEKRAKQELDKHGLTKLIGTVALVTIASC GADNIGLFVPYFVTLSVSELIVTLIVFLVLIYVLVFTAQKLASIPEIGETVEKFSRWIMA VVYIGLGLFIIIENHTLQTIWGMLF >gi|312979660|gb|ACRM01000005.1| GENE 93 90838 - 92190 759 450 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5 450 4 458 458 296 37 2e-79 MSESYDLIVIGAGPGGYVSAIRAAQLGKKVAVIEKFNAGGTCLNVGCIPSKTLLEHGEKA HSIQVANDWGMTTKELNIDFPKFVQRKKKVVQTLTGGVKQLLKKNKVAYIEGEASISKDL NVKVNNETYQGKDIILATGSKPFVPPIDGLDNVDYETTDTFFDLKQLPKQLAVIGGGVIA TELASSMADLGVNVTIVEVADDILLTEIDDTRELLKSHLENQDINIITKAKIKTVDQTKI VLDGQDDVSFDTLLVATGRQPNTQVAKDLNLEMDGKFFKVDDHYQTSQKHVYAIGDLVKG YQLAHAASAHGIHVAEILAGEHPPLVRQENITRCIYTRLEAASIGLSEEQAKEAGYDVKV IQSAFQGNAKALIKGENEGIIKLVIDQTYGEILGAFMVGPHATDLIGEVLGVKASEGTIY ELSEIIQPHPALLEAIGEGADAYFGSAIHM >gi|312979660|gb|ACRM01000005.1| GENE 94 92232 - 93185 1385 317 aa, chain + ## HITS:1 COG:BS_acoA KEGG:ns NR:ns ## COG: BS_acoA COG1071 # Protein_GI_number: 16077873 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Bacillus subtilis # 1 316 9 325 333 358 56.0 5e-99 MKMEKEQARWIYKTMNEIRFFEEKVHKIFSDGQIPGFVHLYVGEEAVATGVMSQLTDDDY ITSTHRGHGHAIAKGCDLNGMMAEIMGKRDGLGHGKGGSMHVAEIDKGMLGANGIVGGGF GLAIGASISIINQGKDNVAVCFFGDGAANEGTFHEGLNFASILNLPVIFVCENNQFAEGT THDYASASETIAERASAYNMPGVRVDGMDVLEVYKATQEAVDRAKKGEGPTLIECDTYRK YGHFEGDEQKVKSPDDRNADKNATVEFRKQAIEEGWLTEEEADDIENTAEQAVEDAVKFA DESELPDEDSLYKDVFA >gi|312979660|gb|ACRM01000005.1| GENE 95 93255 - 94295 1565 346 aa, chain + ## HITS:1 COG:BH1823 KEGG:ns NR:ns ## COG: BH1823 COG0022 # Protein_GI_number: 15614386 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Bacillus halodurans # 5 338 3 336 344 397 60.0 1e-110 MSEERKLTFMGAINEAIDQSMEKDENVILIGTDVSGGAKVEHIQDDDTFGGVFGVTKGLA KKYSRKRVIDTPISEHITLSAAVGSAATGLRPIAELMFNDFIGFGLDPILNQGAKMRYMF GGKAKIPLVVRTVHGAGASAAAQHSQSLYNMFATIPGVKVVVPSNPYDAKGLLMSAIQDD NLVVFSEDKTLLGQKSNVPEEPYTIEIGKANVTREGDDLTIVAIGKMVAVAEETADRLEE DNVSVEVIDLRSVSPWDQDTVLESVKKTGRLIVIDESSPQCNIAGDVASVIGDIGFDYLD GPIKKVTAPDTPVPFASNLEAAYIPNADKVLDVASELVDDLKKANA >gi|312979660|gb|ACRM01000005.1| GENE 96 94310 - 95593 1811 427 aa, chain + ## HITS:1 COG:BH1824 KEGG:ns NR:ns ## COG: BH1824 COG0508 # Protein_GI_number: 15614387 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Bacillus halodurans # 1 427 1 410 410 275 40.0 9e-74 MSENIIMPKLGMTMKEGTVEEWFKSEGDTVEEGESIVTISSEKLTNDVEAPTSGTLLKIK VQAGEDAKVKAVLGIIGEEGEDLGSDDDDSEETNQENKDNDTTSENQQASSNEEQSDKKD TEKEAKPEQRERIFISPLARNMAKDKDLDITRIKGTGGNDRITKLDIQRVDSEGYDYEGE ADTSNENASSTPQNFDVSSIGEGLNPMRQRIAQNMRQSLNNTAQLTLHRKVNADRLLDFK ARLSEELKDADQDVKLTVTALLAKAVVLALKEYGAMNARYENGELTEYDDVHLGIATSLE DGLMVPVIDNADTKSIGTLAKEIKTSAEAVREGNTGDVQLSGATFTITNMGASGIEYFTP ILNLGETGILGVGALAKELVLEGDQVKQVSRIPLSLTFDHQILDGAGAADFLKVLAKYIE NPYLLML >gi|312979660|gb|ACRM01000005.1| GENE 97 95747 - 96085 180 112 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|18309686|ref|NP_561620.1| 30S ribosomal protein [Clostridium perfringens str. 13] # 1 102 1 104 110 73 36 3e-12 MTISNQIMKGLLDGAILGLIAKGETYGYEILEKLKEHQFPEISDGSIYPVLLRLDKKGYV HTTMRKSDNGGPNRKYYTISESGLKELQQFKEKWQALNKGMNHIFRSDNDDK >gi|312979660|gb|ACRM01000005.1| GENE 98 96075 - 96848 741 257 aa, chain + ## HITS:1 COG:no KEGG:SH0229 NR:ns ## KEGG: SH0229 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 18 256 1 239 242 240 53.0 3e-62 MISKEKEDYLFKLKAELLFRGKDEHEVNDIIEELRDHFELAEKNHDDVSDILNTPVKDYA DQFSEYIILTRGLFKYLALFSAFMLAIFIIPNFFTEQLNVTIGFIINILFIFCITTILPF FLIRKGLVKYGEQRRIYIYAFIWGAVIFGFILLSTYLTKHYPIYYIITLTESKSVIIGLI LLLIVMILCFVLKQRLFALVIFIVCLPDIIGWVVKMYSRSESQSIIVSLIVATALLLILN IAFFISTFKKRKNKVKE >gi|312979660|gb|ACRM01000005.1| GENE 99 96855 - 97070 321 71 aa, chain + ## HITS:1 COG:BS_ypzCa KEGG:ns NR:ns ## COG: BS_ypzCa COG3478 # Protein_GI_number: 18677780 # Func_class: R General function prediction only # Function: Predicted nucleic-acid-binding protein containing a Zn-ribbon domain # Organism: Bacillus subtilis # 6 71 3 68 68 76 54.0 1e-14 MSENQNQGCIKCGHTEIEEGTLSATGSGLSKFLDVQHNNFKTITCKNCGYTEFYKQDRNR SRDFIDLFFGG >gi|312979660|gb|ACRM01000005.1| GENE 100 97567 - 99309 2222 580 aa, chain + ## HITS:1 COG:BH1933 KEGG:ns NR:ns ## COG: BH1933 COG0422 # Protein_GI_number: 15614496 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis protein ThiC # Organism: Bacillus halodurans # 4 579 9 594 595 850 69.0 0 MKQEKINFKRTFPASKRIFKKGEGNDSDIFVPFREIELSDTQLEQRSFQNEPVVVYDTAG PYHDDSYEVDINHGLPKVRDAWIEAREDVEHYEGRRIQSIDNGFSRESHKNYVAHPFEYQ PRRGSKDTPVTQMYYAKQGIITKEMKFVAIREQVEPEFVREEIARGRAIIPNNINHPESE PMIIGKNFSVKINANIGNSIVSSSIEAEIEKLVWATHWGADTMMDLSTGKNIHTTREYLL RNSPVPVGTVPIYQALEKVNGVAEDLTWEAYRDTLIEQAEQGVDYFTIHAGLRLHYIPLT VDRLTGIVSRGGSIIAQWCLAHHEESFLYTHFDEICEILSKYDVAISLGDGLRPGSIYDA NDESQFAELKTLGELTDIAWKYNVQVMIEGPGHIPMHKIKENQDLADFYCKEAPFYTLGP LVTDIAPAYDHITSAIGAAQIASHGTAMLCYVTPKEHLGLPNKDDVREGVVTYKIAAHAA DLSKGLPGATERDDAISKARFEFRWIDQFNLALDPDRAREFHDETLPAESAKIAHFCSMC GPKFCSMRLSHDIRDSYKEQLEGMKKKAEEFREGGNKIYH >gi|312979660|gb|ACRM01000005.1| GENE 101 99462 - 100367 1033 301 aa, chain + ## HITS:1 COG:SA2487 KEGG:ns NR:ns ## COG: SA2487 COG2962 # Protein_GI_number: 15928281 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 6 298 4 297 302 366 72.0 1e-101 MDNHAEFKKGILFALGAHLLWGILPIYWRFIYGISAFEILAYRIILAMVFMILMIFVLKK SQALKHDINQLVAHPIQLVAIIIAGYVITINWGTFIWAVSNGHVLQTSLGYYINPLVSVL LAFIFLKERFNTFETLAIVSAAIGVIYMTMKIGEFPIISLMLAFSFGIYGLLKKLVRVEA MSGIAIECIVTAPAGLIYIIYLWQAHQSSVGLNMSTFLLLFSGAVTAVPLILFSAGARRI PLSLTGFIQYVSPTIIFLLGIFVFKEKFDIHQFITFIFIWIGIALYSISQYIKMKRSPRP E >gi|312979660|gb|ACRM01000005.1| GENE 102 100439 - 100573 255 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475534|ref|ZP_04060252.1| ## NR: gi|228475534|ref|ZP_04060252.1| hypothetical protein STAHO0001_0468 [Staphylococcus hominis SK119] # 1 44 1 44 44 71 97.0 2e-11 MAGYKSPGRKISEYIGIIAIVAVFAGVFYKNFKNENQTGNGSLG >gi|312979660|gb|ACRM01000005.1| GENE 103 100598 - 100810 108 70 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVSIARNVNNKKYVAWIYADFLDVKEVLSIIKIIGVAMYLVHSTIPLSKLTMDMFFFYKN GNTLLYALTT >gi|312979660|gb|ACRM01000005.1| GENE 104 100908 - 101081 99 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKTIRYFLYFFIVYFIIFYLAQRLLKLDLGIVRCFISSVIFAIMMSYFAYFAKKLNR >gi|312979660|gb|ACRM01000005.1| GENE 105 101328 - 101846 824 172 aa, chain + ## HITS:1 COG:no KEGG:SE0258 NR:ns ## KEGG: SE0258 # Name: not_defined # Def: immunodominant antigen B # Organism: S.epidermidis # Pathway: not_defined # 1 172 1 170 170 179 62.0 3e-44 MKKFAKAMVVGGITLGTVLGFNVTEHNGVSNEAHAQTQTSQGYHYHYQGYTKSGGEFVLN HTFYNALKAGNVTFNGIKVNDQYQNGTSTTTKYDQTFNQVKGNTAAMIDFKVAPKKVSLE QVKDVYGDHYQYQQPLSKKQADKTEGLYGYTVGKGHITFHVTDGYVDHVTVS >gi|312979660|gb|ACRM01000005.1| GENE 106 101895 - 102101 223 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475562|ref|ZP_04060280.1| ## NR: gi|228475562|ref|ZP_04060280.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 15 68 1 54 54 82 100.0 1e-14 MFETKILDVQGDHYMKFISIVLGLLVIISWLFVLREYQHGHEKTEKGKLVIIIACILTFI MTLINTLD >gi|312979660|gb|ACRM01000005.1| GENE 107 102386 - 102574 152 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKDSIFWKKAFIPVYFIVAFLLFLLFKFYIQTDNFSIYILIFIIASFGIASVIYNSKSKY WK >gi|312979660|gb|ACRM01000005.1| GENE 108 102793 - 103014 138 73 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFVITFCWKRKINFEICFIFRIFLCFFFILNLLLDLVIPLLDFDVYPSLISALFFAIFMT LFTYVLKGNKSKK >gi|312979660|gb|ACRM01000005.1| GENE 109 103306 - 103428 72 40 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAPIYSLDNVYLSVGWTILGLINGVYLIVKQRHENTNKRI >gi|312979660|gb|ACRM01000005.1| GENE 110 103669 - 104277 235 202 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00641 NR:ns ## KEGG: SLGD_00641 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 202 1 202 202 216 59.0 3e-55 MLNIKDQNYFKRALNFFILSTILLLMTIPIALFFHPSEEFIKQLGSNSPESVSKSQGLKK VWGFIQNNGFHVPIQMLLLALIPIPFLYTLNLIVSLIIPGILFGFFIHFDTYKGLTNLIA YIPHYTLEIMSFCIFISGLYMLNKSIIRKITNLFRKEKKQNYSFKTSLFNLLKAYLFVCL PLVILAAFTETYVADMFSNLMN >gi|312979660|gb|ACRM01000005.1| GENE 111 104851 - 107109 2058 752 aa, chain + ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 2 750 8 754 755 759 51.0 0 MDFINITGASQNNLKNIDVNIPKHLVTVFTGRSGSGKSSLVFNTIAAESEQLLNESYSSY IQFHLNQQPRPKVKKIKNLPVAMTINQKRFNGNSRSTVGTVSDIYASVRLLWSRIGEPFV GYSDAYSFNSPKGMCKTCEGLGYIEDINLDELLDWDKSLNEGAIDFPSFGPDKERGKAYR DSGLFDNNKKLKDYTKDELELFLYQEPMTLKNPPKEWRKSAKYVGLIPRFSRIFLGDKEF NKKRYAKHLKNVVNNKICPTCKGQRLNSKILSSKIMSKNISDFTQMTIKENLEFLNKLED PTAKYIIDPLKKQLEALEYIGLSYLTLNRVTTTLSGGEAQRLKLIRHLNSSLSDLVYIID EPSVGLHPEDIAKINEILKSLKDKGNTVLIVEHDPDVIKEGDYIIDMGPGSGKNGGEITF EGTYNELLSSNTSTGNALRNKHNLKENIRESNHFYNIGPVTQNNLNNVKTSIPKHVLTVL TGVAGSGKSTLVKAGFENNDHTIFIDQKAVQGSNRSNLLTYLGVFDSVRSFFSKETGLNK AMFSYNSKGACPNCGGKGYIKTELAFMGDFSQTCEVCHGKRYKQEVLDATIDGYSIADVL DLTVDEGIIFFDKKNDIKSKLQSVSKTGLNYMSLGQPLSTLSGGEIQRVKLAQHLDEEIK NSIFIFDEPTTGLHESDIPILMERFDDLIDQNNTVILIEHNLSIMCEADWIIDVGPGPGL DGGKVQFSGTPKNFIDSSETLTSKHLKRYINQ >gi|312979660|gb|ACRM01000005.1| GENE 112 107382 - 107576 281 64 aa, chain - ## HITS:1 COG:no KEGG:SSP1623 NR:ns ## KEGG: SSP1623 # Name: not_defined # Def: alcohol dehydrogenase # Organism: S.saprophyticus # Pathway: Glycolysis / Gluconeogenesis [PATH:ssp00010]; Fatty acid metabolism [PATH:ssp00071]; Tyrosine metabolism [PATH:ssp00350]; 1- and 2-Methylnaphthalene degradation [PATH:ssp00624]; 3-Chloroacrylic acid degradation [PATH:ssp00641]; Methane metabolism [PATH:ssp00680]; Metabolic pathways [PATH:ssp01100] # 16 54 344 382 382 67 82.0 1e-10 MKSIAYQGYKNMEVCEVNGPIEIITHTMPLEDVKEAYNIFDQKKDNTIKVILKPQYHIDK DALL >gi|312979660|gb|ACRM01000005.1| GENE 113 108054 - 108149 68 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFSTLFVTIIAPIIVGVILTLFSHWLNNREK >gi|312979660|gb|ACRM01000005.1| GENE 114 108845 - 109237 373 130 aa, chain + ## HITS:1 COG:PA3689 KEGG:ns NR:ns ## COG: PA3689 COG0789 # Protein_GI_number: 15598885 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Pseudomonas aeruginosa # 4 129 2 127 156 80 34.0 7e-16 MIYRISEFADKCGVNKETIRYYERKNLLQEPHRTEAGYRIYSYDDVKRVGFIKRIQELGF SLSEIYKLLGVVDKDEVRCQDMFEFVSKKQKEVQKQIEDLKRIETMLDDLKKRCPDEKQL HSCPIIETLT >gi|312979660|gb|ACRM01000005.1| GENE 115 109266 - 110906 621 546 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 85 538 4 456 458 243 30 2e-63 MNKFKVNISGMTCTGCEKHVESALEKIGAKNIESSYRRGEAVFELPDDIEVESAIKAIDE ANYQAGEIEEVSSLENVALINEDNYDLLIIGSGAAAFSSAIKAIEYGAKVGMIERGTVGG TCVNIGCVPSKTLLRAGEINHLSKDNPFIGLQTSAGEVDLASLITQKDKLVSELRNQKYM DLIDEYNFDLIKGEAKFVDASTVEVNGAKLSAKRFLIATGASPSLPQISGLEKMDYLTST TLLELKKIPKRLTVIGSGYIGMELGQLFHHLGSEITLMQRSERLLKEYDPEISESVEKAL IEQGINLVKGATFERVEQSGEIKRVYVTVNGSREVIESDQLLVATGRKPNTDSLNLSAAG VETGKNNEILINDFGQTSNEKIYAAGDVTLGPQFVYVAAYEGGIITDNAIGGLNKKIDLS VVPAVTFTNPTVATVGLTEEQAKEKGYDVKTSVLPLDAVPRAIVNRETTGVFKLVADAET LKVLGVHIVSENAGDVIYAASLAVKFGLTIEDLTETLAPYLTMAEGLKLAALTFDKDISK LSCCAG >gi|312979660|gb|ACRM01000005.1| GENE 116 111173 - 111322 78 49 aa, chain - ## HITS:1 COG:no KEGG:SERP2224 NR:ns ## KEGG: SERP2224 # Name: not_defined # Def: metallothionein 2-related protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 49 1 49 49 61 97.0 9e-09 MEKCARPNCNCLLGETKVEEAGKVYCSQECVDNCTDEVCECKDCSCATA >gi|312979660|gb|ACRM01000005.1| GENE 117 111339 - 111683 207 114 aa, chain - ## HITS:1 COG:no KEGG:SERP2225 NR:ns ## KEGG: SERP2225 # Name: not_defined # Def: ArsR family transcriptional regulator # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 114 1 114 114 212 98.0 4e-54 MSENWCTPKPKLTERPLLDTENAEGLSETFKILSNGTRLRILHTLLRTPNASVSEVAEQL EMKPQAISNQLQRLVDKGIVRSIREANFIRYRIVDNCVVSLLDRGWCLTEDLPK >gi|312979660|gb|ACRM01000005.1| GENE 118 112102 - 112483 237 127 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 127 1 127 224 213 98.0 8e-56 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYR IWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQRDNHSAYAFIKRL IKQFGKP Prediction of potential genes in microbial genomes Time: Sun May 29 09:03:44 2011 Seq name: gi|312979659|gb|ACRM01000006.1| Staphylococcus hominis subsp. hominis C80 cont1.6, whole genome shotgun sequence Length of sequence - 6882 bp Number of predicted genes - 6, with homology - 6 Number of transcription units - 5, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 1/0.000 + CDS 1 - 531 326 ## COG3316 Transposase and inactivated derivatives + Prom 548 - 607 10.6 2 1 Op 2 . + CDS 664 - 1065 326 ## COG0640 Predicted transcriptional regulators + Term 1205 - 1254 13.1 + Prom 1142 - 1201 5.2 3 2 Tu 1 . + CDS 1319 - 2086 849 ## COG0428 Predicted divalent heavy-metal cations transporter + Prom 2166 - 2225 7.9 4 3 Tu 1 . + CDS 2343 - 4751 2454 ## COG2217 Cation transport ATPase + Term 4761 - 4795 3.2 + Prom 4796 - 4855 6.8 5 4 Tu 1 . + CDS 4933 - 6354 781 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 6368 - 6410 9.1 6 5 Tu 1 . - CDS 6511 - 6882 318 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979659|gb|ACRM01000006.1| GENE 1 1 - 531 326 176 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 176 49 224 224 309 98.0 2e-84 RWVQEYAPILYRIWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDAEGHTLDIWLRKQR DNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKYLNNLIEQ DHRHIKVRKTRYQSINIAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIMLAS >gi|312979659|gb|ACRM01000006.1| GENE 2 664 - 1065 326 133 aa, chain + ## HITS:1 COG:BH4037 KEGG:ns NR:ns ## COG: BH4037 COG0640 # Protein_GI_number: 15616599 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Bacillus halodurans # 22 127 5 112 122 108 50.0 3e-24 MSITSINKKEHDLDGIKSRGKDACETFIFDPEKVERRQQEVGQTDGLSQLFKVFADDTRL KIVYALTQEDEMCVCDVATIIGSTNATASHHLRMLRNMGLAEYRKKGKMVFYRLVSNHVH HLMQEALQLKEKK >gi|312979659|gb|ACRM01000006.1| GENE 3 1319 - 2086 849 255 aa, chain + ## HITS:1 COG:STM3190 KEGG:ns NR:ns ## COG: STM3190 COG0428 # Protein_GI_number: 16766490 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Salmonella typhimurium LT2 # 9 254 7 256 257 71 24.0 2e-12 MFSWTVVSLVLLTSIANLVGGLIVVRKEWSPKALTYLMAFSAGFLLSIGILDLMPEGLEN SPENGIYILIGFLVLFAFQRILTTHFHFGYETHEDKLSKKTGGLGAFIGMTIHSFFDGVS IVAGFEVSSELGFLVFVAVLLHKIPDGLTISSIVLVVFNDRKKAFIASAVLALATIFGGA LVWLLSDTEFAAEVLGDSFARIALSFSAGVFLYVAATDLLPVVNQSENRKTGLYVLLGVA VFYIASWIIGVVGLE >gi|312979659|gb|ACRM01000006.1| GENE 4 2343 - 4751 2454 802 aa, chain + ## HITS:1 COG:BH4036 KEGG:ns NR:ns ## COG: BH4036 COG2217 # Protein_GI_number: 15616598 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Bacillus halodurans # 80 802 4 706 707 920 65.0 0 MSEATKPLEKKYVYRVDGFSCANCAGKFERNVKKIPGVEDAKVNFGASKISVYGEATVEE LEKAGAFENLKVAPEKPRRQAPQEVKKDKNIYRVEGFSCANCAGKFERNVKKIPSVEDAK VNFGASKISVYGEATIEELEKAGAFENLKVSSEKPVRQATQEINQEKEDEKEEKVPFYKK HSTLLYSTLLIVFGYLSVFVNGDENIVTTLLFVASMLIGGLSLFKVGFQNLLRFEFDMKT LMTVAVIGGAIIGEWAEVSVVVILFAISEALERFSMDKARQSIRSLMDIAPKEALVRRKG QEMMIHVDDIAVGDIMIVKPGQKIAMDGMVVSGYSAVNQAAITGESVPVEKTIDDEVFAG TLNEEGLLEVEITKLVEDTTISKIIHLVEEAQGERAPSQAFVEKFAKYYTPIIIIIAALV AVVPPLFFGASWETWVYQGLAVLVVGCPCALVISTPISIVSAIGNAAKKGVLIKGGVYLE EMGALKAIAFDKTGTLTKGVPVVTDFNVLNKQVDENEMLSIITALEYRSQHPLASAIMKR AEEANISYSDVVVDDFSSITGKGIKGTVDGTTYYIGSPKLFKELSNSSFDKNLEKKVATL QNQGKTAMVVGTAKEILAIIAVADEVRESSKEVIQKLHQLGIKNTIMLTGDNKGTANAIG SHVGVKEVQAELMPQDKLDYIKQLKSEYNNVAMIGDGVNDAPALAASTVGIAMGGAGTDT ALETADVALMGDDLRKLPFTVKLSRKALNTIKANITFAIAIKFIALLLVIPGWLTLWIAI LSDMGATLLVALNSLRLMRVKE >gi|312979659|gb|ACRM01000006.1| GENE 5 4933 - 6354 781 473 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 10 468 5 458 458 305 37 6e-83 MTGEVKKDVDLLVIGAGSGGYVAAIRAAQLGKKVVLVDKAELGGVCLNRGCIPSKALISA SERVKHIKHANTMGLKVSSEVQVDMPEVVKWKDGIVNKLTDGIRTLLKGNGVEVISGEAY LTEAHIAKIKIEDEEQIFSYKDLILAIGSLPVELKSMPFDQKRIISSTEALQLQEVPNHL VVVGGGYIGLELGTAYAKFGAKVTILEGSDTILSGTDPILTKTVKRHLKEIGITVITDAL VQGGENTGDEVNVHVQVDGKEEIIQGDYCLVSIGRKPNTGKIGLENIGVVLDDQGFIKIN NKCQTNIEHVYAIGDCAGGDLLAHKASYEAKIAAEVISGQNSVIDFQAMPFVIFSDPEVA YTGLTEKEAKEKGYETVSSRFPFQANGRALSVSDADGFVQVVAEKNTKRVLGVQMVGPEV SSLIAEAVFAIEAGANAEDLSLTIHAHPTLPEPLMEAAEGVMGHATHMLNKKQ >gi|312979659|gb|ACRM01000006.1| GENE 6 6511 - 6882 318 123 aa, chain - ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 123 102 224 224 235 98.0 1e-62 VWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKAFKLKPDCHCTSKY LNNLIEQDHRHIKVRKTRYQSINTAKNTLKDIECIYALYKKNRRSLQIYGFSPCHEISIM LAS Prediction of potential genes in microbial genomes Time: Sun May 29 09:04:08 2011 Seq name: gi|312979658|gb|ACRM01000007.1| Staphylococcus hominis subsp. hominis C80 cont1.7, whole genome shotgun sequence Length of sequence - 81428 bp Number of predicted genes - 92, with homology - 82 Number of transcription units - 53, operones - 24 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 72 - 371 158 ## COG3316 Transposase and inactivated derivatives - Prom 405 - 464 5.0 + Prom 329 - 388 6.4 2 2 Op 1 . + CDS 415 - 1245 993 ## SAVP003 hypothetical protein 3 2 Op 2 . + CDS 1208 - 1597 358 ## SAVP003 hypothetical protein + Prom 1758 - 1817 7.2 4 3 Op 1 3/0.059 + CDS 1844 - 2461 772 ## COG4300 Predicted permease, cadmium resistance protein 5 3 Op 2 . + CDS 2480 - 2827 274 ## COG0640 Predicted transcriptional regulators + Prom 2887 - 2946 5.6 6 4 Tu 1 . + CDS 2995 - 3096 154 ## + Term 3102 - 3174 9.1 - Term 2936 - 2964 -1.0 7 5 Op 1 . - CDS 3012 - 3278 149 ## - Prom 3307 - 3366 4.8 - Term 3327 - 3371 4.1 8 5 Op 2 1/0.353 - CDS 3374 - 3943 700 ## COG1309 Transcriptional regulator - Prom 4062 - 4121 8.2 - Term 4229 - 4262 -0.7 9 6 Op 1 . - CDS 4292 - 5236 1329 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components 10 6 Op 2 . - CDS 5260 - 7899 3050 ## COG2409 Predicted drug exporters of the RND superfamily - Prom 7967 - 8026 6.6 + Prom 8262 - 8321 9.0 11 7 Tu 1 . + CDS 8540 - 9148 831 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 9268 - 9328 16.1 - Term 9261 - 9309 13.1 12 8 Op 1 . - CDS 9313 - 9915 405 ## ABC1102 lipoprotein 13 8 Op 2 5/0.000 - CDS 9915 - 10481 460 ## COG4709 Predicted membrane protein 14 8 Op 3 . - CDS 10474 - 10716 78 ## COG1695 Predicted transcriptional regulators - Prom 10741 - 10800 8.9 + Prom 11168 - 11227 6.6 15 9 Op 1 . + CDS 11344 - 11757 396 ## COG2314 Predicted membrane protein 16 9 Op 2 . + CDS 11793 - 11954 133 ## + Prom 12266 - 12325 8.6 17 10 Tu 1 . + CDS 12346 - 12537 291 ## SERP2215 hypothetical protein + Term 12553 - 12591 6.2 18 11 Op 1 . - CDS 13160 - 13492 294 ## COG1651 Protein-disulfide isomerase 19 11 Op 2 . - CDS 13550 - 13813 176 ## SAB2547c hypothetical protein 20 11 Op 3 . - CDS 13822 - 14022 238 ## gi|302334289|gb|ADL24482.1| hypothetical protein SAA6159_02568 21 11 Op 4 . - CDS 14000 - 14080 89 ## + Prom 14290 - 14349 11.7 22 12 Op 1 . + CDS 14479 - 14697 282 ## 23 12 Op 2 . + CDS 14726 - 15334 554 ## ABC1102 lipoprotein + Term 15362 - 15415 -0.0 24 13 Tu 1 . - CDS 15420 - 15614 69 ## - Prom 15637 - 15696 5.7 - Term 15874 - 15913 -0.1 25 14 Tu 1 . - CDS 16138 - 16260 76 ## - Prom 16387 - 16446 6.0 - Term 16590 - 16631 6.3 26 15 Tu 1 . - CDS 16650 - 18014 1787 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases - Prom 18055 - 18114 5.7 27 16 Tu 1 . - CDS 18118 - 18291 141 ## + Prom 18041 - 18100 8.1 28 17 Tu 1 . + CDS 18315 - 18587 133 ## 29 18 Tu 1 . - CDS 19105 - 19743 319 ## SLGD_01954 hypothetical protein - Prom 19768 - 19827 2.5 + Prom 20036 - 20095 11.1 30 19 Tu 1 . + CDS 20124 - 20387 368 ## gi|228475553|ref|ZP_04060271.1| hypothetical protein STAHO0001_0443 + Term 20401 - 20429 -0.9 - Term 20552 - 20597 10.1 31 20 Tu 1 . - CDS 20615 - 21526 1094 ## COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components - Prom 21696 - 21755 7.7 + Prom 21730 - 21789 7.3 32 21 Tu 1 . + CDS 22012 - 23055 1677 ## COG1299 Phosphotransferase system, fructose-specific IIC component + Term 23064 - 23106 7.2 + Prom 23091 - 23150 8.2 33 22 Op 1 8/0.000 + CDS 23234 - 24232 1413 ## COG0078 Ornithine carbamoyltransferase 34 22 Op 2 . + CDS 24253 - 25185 1375 ## COG0549 Carbamate kinase + Term 25203 - 25254 13.6 + Prom 25319 - 25378 9.5 35 23 Tu 1 . + CDS 25435 - 26400 1137 ## COG0502 Biotin synthase and related enzymes + Term 26417 - 26463 6.7 - Term 26409 - 26447 2.4 36 24 Tu 1 . - CDS 26517 - 28124 1887 ## COG1292 Choline-glycine betaine transporter - Prom 28157 - 28216 9.9 + Prom 28137 - 28196 6.9 37 25 Op 1 . + CDS 28345 - 29499 1579 ## COG1820 N-acetylglucosamine-6-phosphate deacetylase + Term 29548 - 29586 -0.7 + Prom 29547 - 29606 7.0 38 25 Op 2 . + CDS 29631 - 29873 318 ## gi|228475557|ref|ZP_04060275.1| conserved hypothetical protein + Term 29889 - 29942 13.3 - Term 29886 - 29921 4.3 39 26 Op 1 1/0.353 - CDS 29925 - 30656 1018 ## COG0363 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase 40 26 Op 2 . - CDS 30678 - 31352 922 ## COG3010 Putative N-acetylmannosamine-6-phosphate epimerase - Prom 31434 - 31493 9.6 + Prom 31458 - 31517 7.6 41 27 Tu 1 . + CDS 31553 - 32359 570 ## COG1737 Transcriptional regulators + Term 32364 - 32399 2.3 - Term 32352 - 32386 2.1 42 28 Tu 1 . - CDS 32401 - 33261 845 ## COG1940 Transcriptional regulator/sugar kinase - Prom 33386 - 33445 11.3 + Prom 33302 - 33361 10.9 43 29 Op 1 2/0.118 + CDS 33491 - 34372 1152 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 44 29 Op 2 . + CDS 34419 - 35951 1865 ## COG0591 Na+/proline symporter + Prom 35971 - 36030 6.0 45 30 Op 1 . + CDS 36107 - 36886 382 ## SH0284 hypothetical protein 46 30 Op 2 . + CDS 36959 - 37645 723 ## SLGD_00276 hypothetical protein - Term 37461 - 37512 2.1 47 31 Tu 1 . - CDS 37750 - 38553 1042 ## COG1266 Predicted metal-dependent membrane protease - Prom 38632 - 38691 4.8 - Term 38657 - 38696 6.0 48 32 Op 1 2/0.118 - CDS 38708 - 39334 195 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 49 32 Op 2 13/0.000 - CDS 39321 - 40094 286 ## PROTEIN SUPPORTED gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 50 32 Op 3 49/0.000 - CDS 40061 - 40828 765 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 51 32 Op 4 38/0.000 - CDS 40818 - 41777 987 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 52 32 Op 5 . - CDS 41770 - 43332 1584 ## COG0747 ABC-type dipeptide transport system, periplasmic component - Prom 43367 - 43426 12.5 - Term 43395 - 43435 6.1 53 33 Tu 1 . - CDS 43494 - 44132 790 ## COG2039 Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) - Prom 44256 - 44315 9.6 + Prom 44220 - 44279 9.0 54 34 Op 1 . + CDS 44315 - 44527 387 ## SLGD_00178 2,3-butanediol dehydrogenase, S-alcohol forming, (S)-acetoin-specific (EC:1.1.1.76) 55 34 Op 2 . + CDS 44534 - 45088 676 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 45122 - 45162 7.1 - Term 45110 - 45149 7.3 56 35 Op 1 . - CDS 45174 - 46151 1185 ## COG3049 Penicillin V acylase and related amidases 57 35 Op 2 . - CDS 46171 - 47361 967 ## COG0477 Permeases of the major facilitator superfamily - Prom 47388 - 47447 5.7 - Term 47408 - 47457 8.7 58 36 Tu 1 . - CDS 47464 - 48426 1273 ## COG1054 Predicted sulfurtransferase - Prom 48495 - 48554 11.9 + Prom 48457 - 48516 9.3 59 37 Tu 1 . + CDS 48686 - 49666 1069 ## COG3386 Gluconolactonase + Term 49684 - 49735 6.6 + Prom 49747 - 49806 6.4 60 38 Tu 1 . + CDS 49845 - 51491 1768 ## COG1109 Phosphomannomutase + Term 51520 - 51569 5.4 - Term 51508 - 51557 7.0 61 39 Op 1 9/0.000 - CDS 51573 - 52427 818 ## COG0829 Urease accessory protein UreH 62 39 Op 2 17/0.000 - CDS 52427 - 53041 950 ## COG0378 Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase 63 39 Op 3 16/0.000 - CDS 53054 - 53743 681 ## COG0830 Urease accessory protein UreF 64 39 Op 4 10/0.000 - CDS 53736 - 54188 657 ## COG2371 Urease accessory protein UreE 65 39 Op 5 17/0.000 - CDS 54200 - 55915 2382 ## COG0804 Urea amidohydrolase (urease) alpha subunit 66 39 Op 6 13/0.000 - CDS 55915 - 56322 668 ## COG0832 Urea amidohydrolase (urease) beta subunit 67 39 Op 7 . - CDS 56336 - 56638 469 ## COG0831 Urea amidohydrolase (urease) gamma subunit - Prom 56740 - 56799 7.7 + Prom 56747 - 56806 9.4 68 40 Tu 1 . + CDS 56839 - 57741 1192 ## COG4413 Urea transporter + Term 57753 - 57808 10.0 + Prom 57755 - 57814 9.9 69 41 Op 1 . + CDS 57860 - 58738 1245 ## COG0524 Sugar kinases, ribokinase family + Prom 58798 - 58857 8.5 70 41 Op 2 . + CDS 58878 - 60017 1410 ## SH0302 hypothetical protein + Term 60034 - 60082 4.3 + Prom 60093 - 60152 10.2 71 42 Tu 1 . + CDS 60183 - 61334 1103 ## COG1686 D-alanyl-D-alanine carboxypeptidase - Term 61257 - 61292 -1.0 72 43 Tu 1 . - CDS 61429 - 62013 649 ## COG1309 Transcriptional regulator - Prom 62098 - 62157 7.3 + Prom 62060 - 62119 6.6 73 44 Tu 1 . + CDS 62206 - 63981 1643 ## COG4716 Myosin-crossreactive antigen + Term 63997 - 64049 12.1 - Term 63985 - 64034 8.2 74 45 Op 1 . - CDS 64042 - 64236 255 ## COG0178 Excinuclease ATPase subunit - Prom 64314 - 64373 1.7 75 45 Op 2 . - CDS 64402 - 65187 834 ## COG2162 Arylamine N-acetyltransferase - Term 65220 - 65263 6.3 76 46 Op 1 . - CDS 65268 - 65903 717 ## SH0308 hypothetical protein 77 46 Op 2 . - CDS 65903 - 66748 247 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 78 46 Op 3 . - CDS 66779 - 67501 610 ## SH0310 hypothetical protein 79 46 Op 4 . - CDS 67498 - 67701 257 ## COG1476 Predicted transcriptional regulators - Prom 67727 - 67786 4.4 80 47 Op 1 . - CDS 67828 - 68151 100 ## COG1959 Predicted transcriptional regulator 81 47 Op 2 . - CDS 68175 - 68309 156 ## COG1959 Predicted transcriptional regulator - Prom 68376 - 68435 9.1 + Prom 68332 - 68391 9.4 82 48 Op 1 . + CDS 68445 - 69365 958 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily + Prom 69508 - 69567 8.1 83 48 Op 2 . + CDS 69601 - 70770 1436 ## COG2814 Arabinose efflux permease + Term 70777 - 70822 11.6 - Term 70764 - 70810 11.0 84 49 Op 1 . - CDS 70836 - 72377 1609 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases - Prom 72412 - 72471 3.0 85 49 Op 2 . - CDS 72477 - 74114 2002 ## SLGD_00529 hypothetical protein - Prom 74172 - 74231 12.8 + Prom 74167 - 74226 10.0 86 50 Op 1 15/0.000 + CDS 74365 - 75327 1252 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Prom 75355 - 75414 4.2 87 50 Op 2 9/0.000 + CDS 75466 - 76239 309 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 88 50 Op 3 8/0.000 + CDS 76241 - 77041 1062 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component 89 50 Op 4 . + CDS 77038 - 77865 1242 ## COG3639 ABC-type phosphate/phosphonate transport system, permease component + Term 78083 - 78144 6.6 + Prom 78484 - 78543 6.0 90 51 Tu 1 . + CDS 78607 - 78693 59 ## + Prom 78826 - 78885 7.0 91 52 Tu 1 . + CDS 78928 - 79410 658 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 79595 - 79654 8.5 92 53 Tu 1 . + CDS 79716 - 81426 1805 ## SH0326 hypothetical protein Predicted protein(s) >gi|312979658|gb|ACRM01000007.1| GENE 1 72 - 371 158 99 aa, chain - ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 83 1 83 224 132 97.0 2e-31 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYR IWKKKHKKAYYKWRIDETYIKIKENGAIYIVPLMQRDIH >gi|312979658|gb|ACRM01000007.1| GENE 2 415 - 1245 993 276 aa, chain + ## HITS:1 COG:no KEGG:SAVP003 NR:ns ## KEGG: SAVP003 # Name: traA # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 2 275 248 521 640 347 84.0 3e-94 MQQNRIEYQPVTYYGQKNEQIRQYNRGELSEVYNDKEKEQAQNEIRLLVQNANDQVSKNE HSYSILFNRYQRDVGYIEAKETLKNTFDNASTFGRKIQNDLFKNEIKRRQLEFYADNYDT NYQFRRDIETKGYSQQEFINTVKSNYKELLNEKNKLESREEKRKEIYQSAKDVYLTESEK NNIIVQQMYPKSHKQFSNDEKAFIVDEAQKGNFIKATHVQYQFKQNNNIPNDILLENTYK KASKDIFFSQRYLKNLEKNTFEYNVELQFIKEKEKN >gi|312979658|gb|ACRM01000007.1| GENE 3 1208 - 1597 358 129 aa, chain + ## HITS:1 COG:no KEGG:SAVP003 NR:ns ## KEGG: SAVP003 # Name: traA # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 8 129 519 640 640 160 89.0 2e-38 MSCNLLRKKKKIDSYKEHIDDDLRIDIGDKNFEKIKDQTPNEKVQLLIKLEKYNNVDQKE VIKKHINQVDRNDHDNHNEHENEQSNHIHLPTINASDFLMYYANETEKQNNINHKKKKKK QDRNNQIRR >gi|312979658|gb|ACRM01000007.1| GENE 4 1844 - 2461 772 205 aa, chain + ## HITS:1 COG:SAP005 KEGG:ns NR:ns ## COG: SAP005 COG4300 # Protein_GI_number: 16119205 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted permease, cadmium resistance protein # Organism: Staphylococcus aureus N315 # 1 205 1 205 205 287 87.0 8e-78 MIQTIVTAAILYIVTALDLLVILLMFFARAKTRKEYRDIYIGQYVGSVTLIVISLFFAFV LNYVPEKWILGLLGLIPIYLGIKVAIYGDSDGEERAKKELNEKGLSKLVGTIAIITIASC GADNIGVFVPYFVTLSVTNLLITLFVFLILIFVLVFTAQKLANIPGVGEIVEKFGRWIMA VIYIALGLFIIIENDTIQTILGFIF >gi|312979658|gb|ACRM01000007.1| GENE 5 2480 - 2827 274 115 aa, chain + ## HITS:1 COG:SAP006 KEGG:ns NR:ns ## COG: SAP006 COG0640 # Protein_GI_number: 16119206 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 115 1 115 115 185 95.0 2e-47 MSYENACDVICVHEDKVNNALSFLEDDKSKKLLNILEKICDEKKLKIILSLIKEDELCVC DISLILKMSVASTSHHLRLLYKNDVLDFYKKGKMAYYFIKDDEIREFFSKNQKGF >gi|312979658|gb|ACRM01000007.1| GENE 6 2995 - 3096 154 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLDNFVHIMTTAASGCIVALFAHWLRNRNDKKK >gi|312979658|gb|ACRM01000007.1| GENE 7 3012 - 3278 149 88 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINNARMTIGQIPILIILNMVLLHSSTNQCYNLLNKVIKHNTPIPSLSEVVRGFLGVTIV AYFFLSLRLRSQCANNATIQPLAAVVMM >gi|312979658|gb|ACRM01000007.1| GENE 8 3374 - 3943 700 189 aa, chain - ## HITS:1 COG:BH0719 KEGG:ns NR:ns ## COG: BH0719 COG1309 # Protein_GI_number: 15613282 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Bacillus halodurans # 13 172 16 172 188 64 25.0 9e-11 MPSANQKRMIKHIHETVFILLHDYHFDEITVQKICDIAEINRSTFYRYFQDKYELLYTLP DFIAQQIIAKGDTSADITTSESFEDFIYYICNNKKIFKHLLVSSRQADVFRSLTNVGREM MLNNSTRKRNPLAQKIRESKHPEIVADFYSSGVIEVLRRWVENDYNYTVEEVFVTLNNVL ETSLYYYDK >gi|312979658|gb|ACRM01000007.1| GENE 9 4292 - 5236 1329 314 aa, chain - ## HITS:1 COG:SPy0184_2 KEGG:ns NR:ns ## COG: SPy0184_2 COG2113 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Streptococcus pyogenes M1 GAS # 32 307 9 267 269 123 34.0 4e-28 MLKRRSSKFLGLLATLALAIVLSACGNSGSGSGSSDDSQTSLGNKEIEIPYIASDNSTPR SLVIAEVLKKAGYDVTTTPVTASGPLYTAVSENSDSFHASGIFPTTDKSYYDKFKSKLTI YDDKHLIDNAKVGLAVPKYVQDVDSISDLKNSDFGKSVDWTIQGTDARNGVMQETKDELD SDNLDKYSLKESSDQDQFKKIQSAFKQQEPIVFTSMEPSWFSKELDVKMLKDPDNIYGNN NQHIDLVFNKNFKEAHPAAYTIATRMADDWSKSDEDKLAKKIFVDNKNPEQVAKDYVDDN DNKVDEWLEDIETN >gi|312979658|gb|ACRM01000007.1| GENE 10 5260 - 7899 3050 879 aa, chain - ## HITS:1 COG:SA2339 KEGG:ns NR:ns ## COG: SA2339 COG2409 # Protein_GI_number: 15928131 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Staphylococcus aureus N315 # 1 768 1 766 829 941 62.0 0 MAKLLYKLGKFIAKNKWLSVIGWLVILGVIITPLMINSPKFDSDITMNGLKSLDTNDKIS KEFHQDSEKASMKIVFHSNKNDGLNNKDTKKDIEDALDNIRQNDDYIQNISNPYDSGQVN DEGDTAIANVSYVVPQTGLKDSSKHIIDKELKDVTDNHNVQIEKAQGSSMNAEIGGTSEI VGIVVAFVILLITFGSLIAAGMPIISAIIGLGSSVGIIALLTYIFDIPNFTLTLAVMIGL AVGIDYSLFILFRFKELKKKGVDTVEAIATAVGTAGSAVIFAGLTVMIAVCGLSLVGIDF LSVMGFASAISVLFAVLAALTLLPALISIFHKSIKIKDKPSKSKDPKDHPWAKFIVGKPV IAVIVSLIILILAAIPVSGMRLGIPDDSLKPTDSSEYKAYKLISDNFGEGYNGQIVMLVN TKDGGSKSTIERDLNNMRSDVEDIDNVDTVSKAQLTDNNNYALFTIIPEKGPNSQSTENL VYDLRDYHSQAQEKYDYDTEISGQSVINIDMSEKLNNAIPVFAGVIVVLAFVLLMIVFRS ILVPLKAVLGFILSLMATLGFTTLVIQHGFMGSLFGIENTGPLLAFLPVVTIGLLFGLAI DYELFLMTRVHEEYSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQDDSAIKSM GIALGFGVLFDAFVVRMTLIPALTKLFGKASWYLPKWLGAVLPNIDVEGKALEEDNHHDT SSEKGHVNDKNNEYARQDKDNYVYQNDKRNHNRNYNDEDYNRSVHLDNHHDQHHRQHHYD NQRDDIDYESLYTQDGDHTHHDERNYNDRHYQDNYDRNDDYHDSNFDKTTNLYKELTDSN IDQDVLFKALMLYARENNKGVYDRYNRSSQHRHDDELRD >gi|312979658|gb|ACRM01000007.1| GENE 11 8540 - 9148 831 202 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 199 1 199 199 271 71.0 5e-73 MIIGYARVSSVDQNLERQLDNLKTFGVEKIFTEKQSGKSVENRPVFQEALNFVRMGDRFV VESIDRLGRNYDEVINTVNYLKDKEVQLMITSLPMMNEVIGNPLLDKFMKDLIIQILAMV SEQERNESKRRQAQGIKVAKEKGVYKGRPLLYSPNAKDPQKRIIYHRVVEMLKEGQAISK IAKEVNITRQTVYRIKHDNDLV >gi|312979658|gb|ACRM01000007.1| GENE 12 9313 - 9915 405 200 aa, chain - ## HITS:1 COG:no KEGG:ABC1102 NR:ns ## KEGG: ABC1102 # Name: not_defined # Def: lipoprotein # Organism: B.clausii # Pathway: not_defined # 1 200 1 199 201 109 41.0 5e-23 MKKFFILGLLIFSLVLTGCNNLESKEDSETDKIVQKPIPNKIFDRKIINSRISENELKKS IKIYLDKNEELSEASEYYEDKVDSEEPLNKSEINKLKKINNLIKHNDENFREYIQNNTLP KDYNKETLRISEYISNSNKFNQNLDTKIDQAINKSIDQKKVSTKNIDEIKDDSKKVNGKE QAKIEKFLKDKNIKTKAFKK >gi|312979658|gb|ACRM01000007.1| GENE 13 9915 - 10481 460 188 aa, chain - ## HITS:1 COG:CAC0572 KEGG:ns NR:ns ## COG: CAC0572 COG4709 # Protein_GI_number: 15893862 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Clostridium acetobutylicum # 1 184 1 190 191 77 27.0 1e-14 MNKEQYLEILKKRMKNVDKDEKKDILNEYESHFISGYKDNKDDTEIIKKLGDPVKISKEI NAMTAINKVEKEKNIKNIFIAAFSIMSLSIFNFISITFSFFVLLLLLPLILAYVIAVPIM IVSSIILLVIGVINGFDTISMHDIFEVIKGVILGIILGFMGYFVAKYFLNFVVLYLKWNM AILKKEKL >gi|312979658|gb|ACRM01000007.1| GENE 14 10474 - 10716 78 80 aa, chain - ## HITS:1 COG:lin0608 KEGG:ns NR:ns ## COG: lin0608 COG1695 # Protein_GI_number: 16799683 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Listeria innocua # 5 77 34 106 110 75 50.0 3e-14 MIQIITNKIIISEGTIYPLLRRLVKENYLESYYKPSKEGPSRKYYSITVKGNKRLHELIK EWEYFTEAINSFMKENDIHE >gi|312979658|gb|ACRM01000007.1| GENE 15 11344 - 11757 396 137 aa, chain + ## HITS:1 COG:SA1057 KEGG:ns NR:ns ## COG: SA1057 COG2314 # Protein_GI_number: 15926797 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 70 136 1 67 67 83 49.0 9e-17 METKIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSNPDLKTILEITKLFNVSL NQLIKGVEIMQVNKYVYSALAFFLGGFGAHKFYVKKNKNALLYLLFCWTGIPGVIGMVEG VLTLMRPSDSENNIEIN >gi|312979658|gb|ACRM01000007.1| GENE 16 11793 - 11954 133 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MITAIVGRLIITTLLLIGEKLSKKKKNSNILKNYGMMIHEHIRFRRSLNILLK >gi|312979658|gb|ACRM01000007.1| GENE 17 12346 - 12537 291 63 aa, chain + ## HITS:1 COG:no KEGG:SERP2215 NR:ns ## KEGG: SERP2215 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 61 1 61 61 99 90.0 3e-20 MSVKNVLKQSWEDLKNLELNFKNVSIVVVVTFILSNILTPLAGIPVGLLGSAYWIQNRKR KQS >gi|312979658|gb|ACRM01000007.1| GENE 18 13160 - 13492 294 110 aa, chain - ## HITS:1 COG:SA2197 KEGG:ns NR:ns ## COG: SA2197 COG1651 # Protein_GI_number: 15927987 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Staphylococcus aureus N315 # 12 109 3 109 199 92 43.0 1e-19 MLYICGRKNTKKSNVILIICLVFILVGCSEEKENKIIIYVDYKCPYCKKVETNIVPKLQK DYLDKDKVDYKFVNMTFLGKDAIKGFRAGHAVQNIAPNHYLEFQKLIFSK >gi|312979658|gb|ACRM01000007.1| GENE 19 13550 - 13813 176 87 aa, chain - ## HITS:1 COG:no KEGG:SAB2547c NR:ns ## KEGG: SAB2547c # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_RF122 # Pathway: not_defined # 1 75 1 75 87 77 72.0 1e-13 MKKLIDKYFFTISQATILFIFAIPMTNLVIKSLLLYILLFIILIGSTFFIERDLSKKYSL QEKAKKMCFTLLPINIVVVLIFFIFIL >gi|312979658|gb|ACRM01000007.1| GENE 20 13822 - 14022 238 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|302334289|gb|ADL24482.1| ## NR: gi|302334289|gb|ADL24482.1| hypothetical protein SAA6159_02568 [Staphylococcus aureus subsp. aureus JKD6159] # 2 65 110 171 172 70 75.0 2e-11 MKNNKKNSTSTSNRDACDAITVTGFAHTTATSRAMAALGVSGPVGWGFAAGMGALYTGES IACNHA >gi|312979658|gb|ACRM01000007.1| GENE 21 14000 - 14080 89 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQGKNGKKAKENLVAFKKEVEKQQKK >gi|312979658|gb|ACRM01000007.1| GENE 22 14479 - 14697 282 72 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSERDTFVSSDDTVRKKRKPNRKEPHGRSREKTPNWLNKSRDMREVQSEKYDQDLEYNRK EFLKQLEKDWGE >gi|312979658|gb|ACRM01000007.1| GENE 23 14726 - 15334 554 202 aa, chain + ## HITS:1 COG:no KEGG:ABC1102 NR:ns ## KEGG: ABC1102 # Name: not_defined # Def: lipoprotein # Organism: B.clausii # Pathway: not_defined # 9 201 4 197 201 88 33.0 1e-16 MNIKKFFVLIMISLLFFSLTACGNSTEKSKNQTSNKSELPAIPKQVFSSSKINENISKKE IKKSVSKYLDTNHALIENIKSLSNKDNLNKNELKKLNSLTEMNDKNDSNFSNFIQNNNLP NGYKDGVFKTKDYITTANQYLNKLNTQIQKVNKNSNSDNLSIKDIDKINSINEQYKKDVN GKKQKEVETFLKDKNIKTKAFN >gi|312979658|gb|ACRM01000007.1| GENE 24 15420 - 15614 69 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRKIDKKTFKNTFKTTSVVILILLYSLFSLSDKYSIILLCLLAIILGTIIHFLVEFIGDY LYKK >gi|312979658|gb|ACRM01000007.1| GENE 25 16138 - 16260 76 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNNFLDTVHLYTNLKVSMKSGQPYRLSAIIATETKKHKKT >gi|312979658|gb|ACRM01000007.1| GENE 26 16650 - 18014 1787 454 aa, chain - ## HITS:1 COG:pli0044 KEGG:ns NR:ns ## COG: pli0044 COG0446 # Protein_GI_number: 18450326 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Listeria innocua # 1 454 1 454 454 477 53.0 1e-134 MKYVVVGTSHAGYAVIETLLISDPEAEIEVFESAEAPSFLSCGIQSYLEDVAPSLHSLHY ADAESLKEQDVNLHLQTTVTDLNTQNKTVTIRKDGHTSEVSYDKLFLSPGAVPNELPING INDYNNVLFMRGEEWAGKIKERMQHAKKAIVVGGGYIGIEAAEAFTKAGIDTTLMDDHDR IINTYLDKEFTDILEKNIAEHGLKFKGNASVKALKADDNNNVTAVVTDDGEYKADTVLFA VGVKPATEWLDGKVELGKKGIIKISDRLETSEKDVYASGDATLIPFAPINEDRYIALATN SRRQGYVAARNMAGKDMKMPRVSGTSGLSLFDYKFGQTGVHETEKDSYDGNLGAKYIEVP VRPKFRQDDTTVHLKIMFDEDTHRILGGQIMSTEDLVESINTLSVAINAGWTLEELALVD FFFQPDFNRPWNYLNILAQRALGDDVFPKDKQLF >gi|312979658|gb|ACRM01000007.1| GENE 27 18118 - 18291 141 57 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLTINRGLNVDLIRFHLFSFFSILYIYAVSKINSKYPKTTAIITILLTLPILPYSIE >gi|312979658|gb|ACRM01000007.1| GENE 28 18315 - 18587 133 90 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MITFIYQLILFFIIIGTYALMRGGYMDIEWNFLLSMYGMFVGYLVMFYFSIYTNTDFSRR TIKIISTISIILMTIILVILGHLLFILLTE >gi|312979658|gb|ACRM01000007.1| GENE 29 19105 - 19743 319 212 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01954 NR:ns ## KEGG: SLGD_01954 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 204 1 206 217 124 42.0 2e-27 MEESLNRLRKPAIQVVNIFSLLFIFFSYIQYQFDLTLERTPNYLIITTGFALVINLLGLF QFFEKKIDNPINKAKRYLIVNILSLYVSYLTFYNLYFFVAAEHQYYLDKYWYIGFITLLV CTTMHILSVLLMRFSPKWLKYDKRIVIIILKAIASLIYIQKIIEYITIPNIADSNFVFLI SILYIFACNFLVTIYYLLYGRVYTETKKTKTK >gi|312979658|gb|ACRM01000007.1| GENE 30 20124 - 20387 368 87 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475553|ref|ZP_04060271.1| ## NR: gi|228475553|ref|ZP_04060271.1| hypothetical protein STAHO0001_0443 [Staphylococcus hominis SK119] # 1 87 1 87 87 123 100.0 4e-27 MKQYMLSKVLLSVSIVTESVVAPIVVSNADQIHAADKQDGISNLTQKNKSVLHLSITDSN ITGKINDNEILTLSDGKTTKQIGINVL >gi|312979658|gb|ACRM01000007.1| GENE 31 20615 - 21526 1094 303 aa, chain - ## HITS:1 COG:BMEI1737 KEGG:ns NR:ns ## COG: BMEI1737 COG0715 # Protein_GI_number: 17988020 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components # Organism: Brucella melitensis # 2 290 43 328 341 106 26.0 5e-23 MEKLRVGLEWFLNPDHMPLILGIEKGWFKEQNLEIEMIEPEEHFDALDEIEKGTMDIAIT EPIHLVEDKASNQNVVGFARFLHTNGGIMYKKDKGIKTPKDLIGKRLQYPGAPGLGGIAI AKTMIEADGAQYTDGDIIPVNNSFYHTDALLNDKADAATLIFENFEILEAKSKGLNVDYF ALKDYNVPDFCQLIFITTPDKLHSEEEKIKTFIKVIQKAIQYIKTNLEEAINIYSSYTNT DVSEDLNKSTIQATAKCFTNDLSMSSDFYNDLQLWLKETGKIKKTIEPKEYFTNQLLFSR YAN >gi|312979658|gb|ACRM01000007.1| GENE 32 22012 - 23055 1677 347 aa, chain + ## HITS:1 COG:SA0298 KEGG:ns NR:ns ## COG: SA0298 COG1299 # Protein_GI_number: 15926011 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 340 1 340 343 461 90.0 1e-129 MDLLIGTLFLVLVLVIFTLFTYKAPSGMRAMGALANAAIATFLVEAFNKYVGGEVFGIKF LEQLGDAAGGLGGVAAAGLTALAIGVSPVYALVIGAACGGLDLLPGFFAGYIVGYLMKYT EKYVPDGVDLIGSIVLLAPLARLIATGLTPVVNNTLLKIGDIIKSSTDTNPIIMGIILGG IITVVGTAPLSSMALTALLGLTGVPMAIGAMAAFSSAFMNGTLFHRLKLGDRKSTISVSI EPLSQADIVSANPIPVYVTNFFGGAAAGLIIALSGMINDATGTATPIAGFLVMFGFNSPM KVIIYGVVMAIVGGLAGFLGSLAFKKYPIVTKQDMIDREAKRKVKTA >gi|312979658|gb|ACRM01000007.1| GENE 33 23234 - 24232 1413 332 aa, chain + ## HITS:1 COG:SA1012 KEGG:ns NR:ns ## COG: SA1012 COG0078 # Protein_GI_number: 15926752 # Func_class: E Amino acid transport and metabolism # Function: Ornithine carbamoyltransferase # Organism: Staphylococcus aureus N315 # 1 332 1 332 333 552 79.0 1e-157 MQNLRNRNFLTLLDFSKKEMEFLLNLSEDLKRAKYAGIEQQKLKGKTIALIFEKNSTRTR CAFETAAYDQGAHVTYLGPTGTQMGVKETAKDTARVLGGMYDGIEYRGFSQRTIEEIAEY AGVPVWNGLTNEDHPTQVLADFLTAKEVLKKPYEDIHFTYIGDGRNNMANALMQGAAIMG MTFHLVCPKELRPKDELLETCQSLADKNGGTILVTDNIDQGVKGSDVIATDVWVSMGEPD DIWEERIKLLEPYRVTKELIEKTGNPHTIFEHCLPAFHNTETEIGKQIKEKYGLNEMEVT DEVFESDRSVVFQEAENRAHTIKAVMVATLGE >gi|312979658|gb|ACRM01000007.1| GENE 34 24253 - 25185 1375 310 aa, chain + ## HITS:1 COG:SA1013 KEGG:ns NR:ns ## COG: SA1013 COG0549 # Protein_GI_number: 15926753 # Func_class: E Amino acid transport and metabolism # Function: Carbamate kinase # Organism: Staphylococcus aureus N315 # 1 310 1 310 310 457 74.0 1e-128 MSKIVVALGGNALGESPKEQLELVKGTAQSLVGLINKGYEVVISHGNGPQVGSINLGLNY AAEHEQGPPFPFPECGAMSQAYIGYQMQESLLNELHALGINKEVVTLVTQVEVANDDPAF QHPTKPIGLFYTKEKADKMKQEKEYAFMEDAGRGYRRVVPSPQPINIVELDSIETLIKHG TLVIAAGGGGIPVVKEQSGRYQGVDAVIDKDKTSALLAAHLQSDQLIILTAVDYVYINYG KDNQKGLGDVTVDDMKGYIADNQFAKGSMLPKVEAALQFIEKNPKGSVLITSLSGLDDAL EGKIGTRITK >gi|312979658|gb|ACRM01000007.1| GENE 35 25435 - 26400 1137 321 aa, chain + ## HITS:1 COG:SA2213 KEGG:ns NR:ns ## COG: SA2213 COG0502 # Protein_GI_number: 15928003 # Func_class: H Coenzyme transport and metabolism # Function: Biotin synthase and related enzymes # Organism: Staphylococcus aureus N315 # 3 320 1 318 335 517 76.0 1e-146 MTLNLAERVLNGEALTKEECLSLFQDETIDTFELLNEAYIVRKHYYGKKVKLNMILNAKS GICPEDCGYCGQSVKMKEKQRYALVDQEQIKAGAQVATDHKIGTYCIVMSGRGPSNKEVN HICDTVEDIKAIHPQLKICACLGLVDDEQATQLKEAGVDRYNHNLNTSERYHEEVVTTHT YEDRVNTVEVMKAHHISPCSGVICGMGETDEDIIDMAFALKEIDADSIPVNFLHPIKGTK FGGLDLLSPTKCLRILALFRLINPTKEIRIAGGREVNLRSLQATALQAANSIFVGDYLVT GGQPNELDYQMIEDMGFEIDG >gi|312979658|gb|ACRM01000007.1| GENE 36 26517 - 28124 1887 535 aa, chain - ## HITS:1 COG:BH3895 KEGG:ns NR:ns ## COG: BH3895 COG1292 # Protein_GI_number: 15616457 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Bacillus halodurans # 12 497 11 493 517 447 50.0 1e-125 MNDKRKRNNRLVYIISVSIIIIITAIAGIFPKTFGTHAQTMYDFISNTFGWLFLLIIFIL DIFLISLATSRYGRFKLGDDNEEPEFSFMSWIGMLFSAGLGVGIVFWGVAEPLTHYLHSP FPGKVPDQSPESARLAMGYTFFHWGISQWSIFAMAGLIVAYFQFRKKRNGLISTAMEPVF GEAYKRPFRNIIDILAIIATVMGIATSIGLGIMQISGGLNHVLQVPNNNITKISITVLMM IIFIGSGITGLGRGVKWLSNLNIILGALLLVFMLIFGDLKFIFESYTLAIGDYIRHFVEY SLRIDPYTNNNAWIQQWTVFYWAWVISWSPFIGGFVARVSRGRTIREFIMCVLIVPPLIS FVWICGFGGMAVKFAMGGDKIASLVDKDYTVALFELLSKFPLSDITSGLAILLIFLFIVT SADSTTHIVAGMATGGSENPKIKHKVIWGLLIGAISVAMTIAGGLTSLQTASVVTGLPFS IILLLMTISIMRALRREHTKHFQMSYVKDDKDYSIPLEKREKDSKTLNNDHSEKS >gi|312979658|gb|ACRM01000007.1| GENE 37 28345 - 29499 1579 384 aa, chain + ## HITS:1 COG:SA0656 KEGG:ns NR:ns ## COG: SA0656 COG1820 # Protein_GI_number: 15926378 # Func_class: G Carbohydrate transport and metabolism # Function: N-acetylglucosamine-6-phosphate deacetylase # Organism: Staphylococcus aureus N315 # 1 384 1 392 393 494 65.0 1e-139 MSQYVITNGRIYTEAQVIEKGYLVVENGKISDIQKGDYKGHLNQIDVAGKHVLPGFIDIH IHGGYGEDAMDASYDGLNHLAKQLLSEGTTTFLATTMTQSDENIEKALKNIVACYENQTL GEAAEISGVHLEGPFISEHKVGAQNPKYVQRPTVDKIRHFQEVAKGLIKIITFAPEVEGA HDTLNELRDEIIFSMGHTVATFEEANEAVERGAKHVTHLYNAATPFEHRNPGVFGAAWTN QSLNTEIIGDGIHSHPAAVDIAYKQKGYTHMYLITDAMRAKGMKDGEYDLGGQNVIVKGK EARLENGALAGSILKMNEGLHNLIQFTHDSLDHLWRVASLNQAIALNIDKQKGSLSIGKD ADIVIVDDHIQVDTTIKSGTIHHF >gi|312979658|gb|ACRM01000007.1| GENE 38 29631 - 29873 318 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475557|ref|ZP_04060275.1| ## NR: gi|228475557|ref|ZP_04060275.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 80 1 80 80 97 98.0 3e-19 MQNDLRFPSSKNFFTTLGWLSVIALLAVVVVNALYNSSFKSWSDISVKFTQTDLIFLITF AIIAIVCIIISLLLKLFKHP >gi|312979658|gb|ACRM01000007.1| GENE 39 29925 - 30656 1018 243 aa, chain - ## HITS:1 COG:SA0527 KEGG:ns NR:ns ## COG: SA0527 COG0363 # Protein_GI_number: 15926247 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase # Organism: Staphylococcus aureus N315 # 1 235 1 236 252 257 57.0 1e-68 MKLINLKNKSIASDYVAVELLKLVQSTPTATLGLATGNTMTEIYPRLSELLTANRVNLND IKTFNLDEYVGLNSSHPQSYYTYMHELLFNHNEWNENHIYIPRGDAPDLEDEAHAYEQRL SSIGEPDIQLLGIGENGHIGFNEPGTSFDSQTRVVDLTDSTIKANSIHFDTIDDVPKQAI SMGLQSIMRAKRIILLAFGERKQEAIDRLVNGSKTETLPASILQTHPNVDIIIDDVIFNY LNH >gi|312979658|gb|ACRM01000007.1| GENE 40 30678 - 31352 922 224 aa, chain - ## HITS:1 COG:SA0307 KEGG:ns NR:ns ## COG: SA0307 COG3010 # Protein_GI_number: 15926020 # Func_class: G Carbohydrate transport and metabolism # Function: Putative N-acetylmannosamine-6-phosphate epimerase # Organism: Staphylococcus aureus N315 # 1 222 1 222 222 340 75.0 1e-93 MLPQGLIVSCQALPEEPLHSSFIMSKMALAAYQGGAVGIRANSIEDIVAIRKEINLPVIG IVKRDYTNSSVFITATSKEVNELIESGCEVIALDATKQKRPKEPLEELVKYIREKAPDIE IMADISTIEEAIYADQLGFDYIGTTLRGYTSYTKGHILYENDFEFLKEVLNQVNTKVIAE GNVITPDMYKKVNELGVHCTVVGGAITRPKQITERFVEAVKNHS >gi|312979658|gb|ACRM01000007.1| GENE 41 31553 - 32359 570 268 aa, chain + ## HITS:1 COG:SA0306 KEGG:ns NR:ns ## COG: SA0306 COG1737 # Protein_GI_number: 15926019 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 265 1 265 266 310 61.0 2e-84 MKFENRVQRCRHLLTKTDKRIIEYIQKHPLDDSFSTINSLAYAIETSPATITRFSNKLNY DNFQDMKFSLQHEKSEKSVENAPLVQLIHRYHQNIIQQTGEFISEEKIKRLAHNLKTCRQ VNFAGLGSSGLTASEFYYRAMRMGIKGLVSTDAHQMKISASLLSSNDMFVAISNSGETSE LIDAAKIARNQGAYVVVITNFEGSTITKNADLVLITSAQSNNNDTRFINSQIATHFLLDL VSYILLGDPYMHKLYQQTRQVVLNHGSK >gi|312979658|gb|ACRM01000007.1| GENE 42 32401 - 33261 845 286 aa, chain - ## HITS:1 COG:SA0305 KEGG:ns NR:ns ## COG: SA0305 COG1940 # Protein_GI_number: 15926018 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulator/sugar kinase # Organism: Staphylococcus aureus N315 # 1 286 1 286 286 333 59.0 2e-91 MYKIAVDIGGTNIKLAVINNELNIIDYKTIATPDNIHILITNEIYLIIDAFIKKYQLKNP HIGISSAGVVDSTRGEIVYTGPTIQNFDGTNFLNVFKELSSNITVYNDVDAALLGELSLH NYEENNIFCLTLGTGIGGAFYNKSIGIYQGARHRANEIGYLLYRSSDDKTFEQRASTSAL KDLMLLHHFKYDTNVPKLFELAEENDTVAINILEEWSHSVAEGIAQLQIIYDPELILIGG GISSQKDTLLKYIKPKIHYYLPPHYGIARLQTTRSGNNAALYGAIQ >gi|312979658|gb|ACRM01000007.1| GENE 43 33491 - 34372 1152 293 aa, chain + ## HITS:1 COG:SA0304 KEGG:ns NR:ns ## COG: SA0304 COG0329 # Protein_GI_number: 15926017 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Staphylococcus aureus N315 # 1 293 1 293 293 484 83.0 1e-136 MEEQLKGLYAALLVPFDENGQVKEEGLKQIAKNAIEVEQLDGLYVNGSSGENFLISKEQK KQIFKVVKEAVGNDVKLIAQVGSLDLNEAIELGKYATNLGYDALSAVTPFYYPFSFEEIK QYYFDIIEATQNKMIIYAIPDLTGVNISINQFEELFDNEKIVGVKYTAPNFFLLERIRKA FPDKLILSGFDEMLVQAVISGVDGAIGSTYNVNGRRARQIYDLAREGKVEEAYKIQHDTN NIIETVLSMGIYPTLKEILKTRGIDGGVPKRPFSPFNEANRKELNQLIETYNL >gi|312979658|gb|ACRM01000007.1| GENE 44 34419 - 35951 1865 510 aa, chain + ## HITS:1 COG:SA0303 KEGG:ns NR:ns ## COG: SA0303 COG0591 # Protein_GI_number: 15926016 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Staphylococcus aureus N315 # 1 507 1 507 510 728 79.0 0 MQHIGFGLWNWIAVIVYLVAMLLVGAYFTKRASQDTDSFFKASGRLPSWAIGFSIYATTL SAITFMSTPEKAFLTDWAYIAGNIAIVAIIPILIAFYVPFFKKLHVTSAYEYLEARFGPS IRLIGSLLFIIFHLGRIAIVIYLPTLAITAVSDINPYIVASLVGILCILYTFLGGFEGVV WSDFIQGVILLGGALLIIIIGAFEIKGGFGTIVHDAIANKKILSADNWKLNSAAAAIPII FLGNIFNNLHQYTASQDVVQRYQASESMEETKKSLWTNGVLALISAPIFYGMGTMMYSFY QHQETLPKGFNTSSIVPYFILTEMPPFIGGLLIAAIFAAAQSTISSSLNSISACTSEDIK HRFFGKKDDKSEVKFARLIIVIAGLLSYGISMYLIAADSNNLWDLFLLITGLFGVPLAGI FAVGIFTRRANTFGVIVGLFAGVIIAYLLHGIGGGNSPFYVSIISFLVAFILGYIVSLLV PSKNVKDITGLTIYDKNKASTYISKIAKRN >gi|312979658|gb|ACRM01000007.1| GENE 45 36107 - 36886 382 259 aa, chain + ## HITS:1 COG:no KEGG:SH0284 NR:ns ## KEGG: SH0284 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 251 17 267 272 265 60.0 1e-69 MGISQIISLLFDIIIPFYGIGTILSSITYILLTFLVVRWIITHVFKETLSSYRMTKPVFH PIYLILGIALPCVIYAIYFIFIPGDFKVHHFNSISKTIHDLSYIIFMQAAAGAIVEEMVC RGLLMGYIEKKTNIRIAIIVTSLFFGVIHLLNGALNVTSFFLLLVSGTLVGMMFGIATYR FNTIWASITLHFFWNVFQIVYITTKETDYNVFQYVLRFKNMVLTGGQFGFETSIVSTIGY IVVIIVLLMCRTPYKGSNL >gi|312979658|gb|ACRM01000007.1| GENE 46 36959 - 37645 723 228 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00276 NR:ns ## KEGG: SLGD_00276 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 60 219 37 193 193 100 41.0 5e-20 MKKIVIVTLILILSIGLVGCHRLSKEDSDPSDKANTQEEHSTEENKNSDDQDISLEPDTK IPDHVFEKTSVRHVQISEKTIKKDIKTYSNIDKKINDTMNTYKMKLYSNQKLSNTEANKL KKLVQLENENDTNFAQYIQNNQMPNNDYVIYTDKISRYISTANRIEQKSLEISLKSDDDT SIFNDIEQVNKDQDIVNDQEKQDIANFLEDKNIKTETFNEDSNHIDID >gi|312979658|gb|ACRM01000007.1| GENE 47 37750 - 38553 1042 267 aa, chain - ## HITS:1 COG:SPy1384 KEGG:ns NR:ns ## COG: SPy1384 COG1266 # Protein_GI_number: 15675310 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Streptococcus pyogenes M1 GAS # 115 258 87 224 231 68 31.0 1e-11 MTQQGITETRMHSDSNLDSHYHKKDEHYPKGNRFLNVLIFIGWMLLAQIPIVLILFITNF SAKMDVTSGTLATLLFMLLAAVVIWLVRRYYQRHTYEPIKPFKRKDIMINIGWALLLRVI VIGMSFLMMAITGQAQTENDKALLGNFQGAKPSPDQLGQAFPVIVFALTLTFVAPYLEEL IYRGIFKETLFKRSSFWLPFILSSLIFASQHGISNWVAVLMYIIMGMVFYLAYHRRHNVR DSMMVHMIHNGVTGIVIIVSYFIAMFS >gi|312979658|gb|ACRM01000007.1| GENE 48 38708 - 39334 195 208 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 1 200 278 486 563 79 28 4e-37 MLQIKQLNKAFSNKQIFKNFNYTLETHDHLLISGVSGSGKSTLAQIIAGLDSNYQGTLIY NDLELGHISQHKWMKHIQYVPQYHSSTLDPNKTVHWILKQPLIHFHYPKAIHEDRIKEVM SQCKLESQLLGKKVSTLSGGQFQRLWIAKALLVEPDVLILDEATTNLDMVNEDIILQMLR EFQHLQLIIITHDSYLLKALPGKHLNIG >gi|312979658|gb|ACRM01000007.1| GENE 49 39321 - 40094 286 257 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163765018|ref|ZP_02172066.1| ribosomal protein L9 [Bacillus selenitireducens MLS10] # 33 245 41 262 329 114 31 1e-24 MSNTQSSSPTLDTVLYINDVSVYHKHEPLLKQIHLKIEKGSFHCLIGESGSGKSLLTRTV LNMKEDDLTYRGEIHLDLTQTDAMFQDANRNFFQNVRINRHFDALFDSMSSSLTRDQQKA FVLRQFKHLGLDQPESIYYQYPFELSGGMAQRVALVMAIVREAQFLIADEPTSALDQHNR HSLMALLHHVVTEHDMTVLFVTHDLNLVLNYATHISVMLNGNIVETGRASDILRDPQHAY TKQLIELANRRYQYVTD >gi|312979658|gb|ACRM01000007.1| GENE 50 40061 - 40828 765 255 aa, chain - ## HITS:1 COG:SA1213 KEGG:ns NR:ns ## COG: SA1213 COG1173 # Protein_GI_number: 15926961 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 24 245 32 253 276 141 34.0 1e-33 MKIKHFIWPIAIIILAVLAYALYDKANQIHQSQALRPPSLHHLLGTDDLGRDFLTRLFVG SLITLGLTAFIMIGTIVLGLIIGLISAIVGKWLDSIIMALADMLIALPAIIIALVVLGFI NNSVVGLCLALIIGWLGRYLRYFRNLARDTMTQPFVKFAPLSGMSKFQVTIHHIVPHLIS DIMALVTADFGKLMLSISGLAFIGLGVKPPIPELGAILHDGKSYFYSAPWLFIFPGVLLG GFALICQILNRRHLH >gi|312979658|gb|ACRM01000007.1| GENE 51 40818 - 41777 987 319 aa, chain - ## HITS:1 COG:PAB0092 KEGG:ns NR:ns ## COG: PAB0092 COG0601 # Protein_GI_number: 14520361 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Pyrococcus abyssi # 4 307 6 306 310 130 29.0 4e-30 MISMIKHLLKLILYFIIISFILFVLLEHTTGNPAIQYLHEHGVAQITDERIKMAQDKLGL SQALPIRYLQWLGHAFTGDLGTSFSNGEPVTDRIAKAVAPTLKLIFISAIILFPLGYIIG YLCGNYPKKKWSIFILRASQVVTSLPEYWLAIIFIYYFGVKWHLLPFVGSYSFEYFILPI AILVLVEGSHMVLLSSHLFERTLRNEAYQLASLRQFKLKDRIYVQVKDILAPLLTITINN FIRLFSRVIILEVIFSISGLGKLLIISINLRDYPLILGILMMMITIIMILNFLGDILLEK SDPRLNMSKTLGGRVTYED >gi|312979658|gb|ACRM01000007.1| GENE 52 41770 - 43332 1584 520 aa, chain - ## HITS:1 COG:MA3455 KEGG:ns NR:ns ## COG: MA3455 COG0747 # Protein_GI_number: 20092267 # Func_class: E Amino acid transport and metabolism # Function: ABC-type dipeptide transport system, periplasmic component # Organism: Methanosarcina acetivorans str.C2A # 26 515 50 530 538 262 32.0 1e-69 MRKHLLLSFMMCASLLLTGCTHDHYQHKEVKVSLAREFNPSQLDAQAFDVPMPVYSAIYQ PLVTYGENGKIEPGLAKSWKVSNNGKDYTFHLKHHIKFNDGSNFDAKAVKFSIERAKATD KTNPMETLDKLKSVTIKDNYTVDIHLKMPSNQVLNELSQIRPLRIMSPHAVKDGKTTGKF EKAIGTGPFKVADSTNETVTFKPNPYYHNHHPLDYDLIFQTIEDSDSRHLAMESHSIDIT GGSLGHLTPQQIKESYRNQDLKVKQYPSTETQFMAFNPEVSLLQNKKMREAISKAINTDH LSSNKQLKGLFQDGVEFVNDTNQHTHSYNPTQATRLLEQLGYKKNDRGYFEKNGRDLSLK LALQTDEFPEWKTKAEIMQQDLKNVGIHLDINVLDAQTYYETLTIRKDYDLIFYRSYTNA LMPYNFLNARFKQDGDKPGMFANDVQLTTMLNRFSTITNKDDQQRAFNHISHRINQQYLE VPIAYPNEVFVTSPKIKQFEFSGQTDAPINYDKLKVSHHD >gi|312979658|gb|ACRM01000007.1| GENE 53 43494 - 44132 790 212 aa, chain - ## HITS:1 COG:SA2482 KEGG:ns NR:ns ## COG: SA2482 COG2039 # Protein_GI_number: 15928276 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) # Organism: Staphylococcus aureus N315 # 1 211 1 211 212 265 63.0 3e-71 MNILVTAFDPFGGEKVNPALEAVRQLDPTIGAHTITTLEIPTVFHKSKDVIQHELEHHHY DVVLSIGQAGGRFNITPERVGINIDDARIADNKGNQPIDVAIHPDGAPAYFSNLPIKSMT EAIKKAGVPASLSNTAGTFVCNHVLYQLGYLADKFYPNLLFGFIHVPFIPEQVIDKPNTP SLSLDTITKGITAAINAISDLPDVKVALGETH >gi|312979658|gb|ACRM01000007.1| GENE 54 44315 - 44527 387 70 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00178 NR:ns ## KEGG: SLGD_00178 # Name: not_defined # Def: 2,3-butanediol dehydrogenase, S-alcohol forming, (S)-acetoin-specific (EC:1.1.1.76) # Organism: S.lugdunensis # Pathway: Butanoate metabolism [PATH:slg00650] # 1 70 1 70 257 102 78.0 5e-21 MTKTAVITGSAAGLGKGIAQRLANDGFNIVIQDINQKALEKTEQEFKENGYNVVAFHSDV SKKKEQEELV >gi|312979658|gb|ACRM01000007.1| GENE 55 44534 - 45088 676 184 aa, chain + ## HITS:1 COG:Cgl2619 KEGG:ns NR:ns ## COG: Cgl2619 COG1028 # Protein_GI_number: 19553869 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Corynebacterium glutamicum # 3 183 78 257 258 175 53.0 4e-44 MAEFGQIDVFVNNAGVDAVSPILDITEDELDKLFHINVYGTLFGIQAAAKQFIKQNSKGK IINACSIAGHESYEVLGTYCATKHSVRSLTQTAAKELAEKGITVNAYCPGVAKTEMWDRI DAEMVKLDSNLKPGEAFEQFSSAIKLGRYQEPQDVASLVSFLASSDSDYITGQAILTDGG LVYR >gi|312979658|gb|ACRM01000007.1| GENE 56 45174 - 46151 1185 325 aa, chain - ## HITS:1 COG:SA0264 KEGG:ns NR:ns ## COG: SA0264 COG3049 # Protein_GI_number: 15925977 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Penicillin V acylase and related amidases # Organism: Staphylococcus aureus N315 # 1 325 1 328 330 355 53.0 7e-98 MCTGITFQASNGDVIFGRTMDYDYPLNGFPAVQPRGYSFKSHVDYEGETLYAFAGAGSDM EGFVFGDGVNEHGLAMSNQYDRGYASYATDIREGYINISQTEVLVWALGYNRTIEELIEN AKQVNVVAYSYSDINEVPPLHYHLSDATGRTVEVTFVDGRIVVIDNPIGVLTNNPDLNWH YENLKHFMHVTPYNIDNTFSKQLNLGNTNGTFGLPGGYTSGERFVRAAYLVHHLLPNSDD HPILDAFRILDHVSVPKGAVRPSDNGFYYTLYQTVFNLTTKTLYIKYYDSNTITELQLTD DLINRDDLVVFSRKNKGLYTEKVND >gi|312979658|gb|ACRM01000007.1| GENE 57 46171 - 47361 967 396 aa, chain - ## HITS:1 COG:BS_yjbB KEGG:ns NR:ns ## COG: BS_yjbB COG0477 # Protein_GI_number: 16078213 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Bacillus subtilis # 4 388 2 387 402 92 23.0 1e-18 MKKHSKDYFHLFYSQLFANTGDVLTVVGLISVVYSMTSKTTAASMIPIIFTSGLFVSSFI SNYIYQYFTQKQVLWIFQGLKLVSLSIIASLLIFEESPIFIFILLFINALFDGFTNPIKN AMIPFIEKKEYITSANALMNMMSSMVQLSTWALGGFLMSLIGAKYLFLFALVLEILSYFF IIQLSERHIYNNEKENILNSFKTVLRHNYSNKLSLYLNLSIIFESVATSIWVAAIILTYT RTFLHVDDFWFGLINAAFFSGTIIAGLWMNDKDQFFTKISYPIIIYIPLILAFINASFIL HQSVLLALLMSLLMGIFEDSRYISLNSVVQREVPKEALTSTYILNNLLSSIFFSLGTLGI SLVVDNQGVMWAYVISSVAYVLTFVLGLYFKTAIKN >gi|312979658|gb|ACRM01000007.1| GENE 58 47464 - 48426 1273 320 aa, chain - ## HITS:1 COG:SA2481 KEGG:ns NR:ns ## COG: SA2481 COG1054 # Protein_GI_number: 15928275 # Func_class: R General function prediction only # Function: Predicted sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 317 1 317 318 540 82.0 1e-153 MDYRVLLYYKYTTIDDPDTFATEHLAFCKEHNLKGRILVSTEGINGTLSGTKEDTDQYIE HMHADERFKDMTFKIDEAEGHAFKKMHVRPRKEIVALGLEDDVDPRVTTGKYYSPSEFKA ALEDDDTVILDARNDYEFDLGHFRGAIRPDITRFRDLPDWIRENKEKLDGKNIVTYCTGG IRCEKFSGWLVKEGFENVGQLHGGIATYGKDSETKGEYWDGKMYVFDERISVDVNHVDKT VIGKEHFDGTPCERYINCANPECNKQILVSEKNEAKYLGACSYDCAKHERNRYVAKHHIS DEEWNRRLENFKDVPEHIHA >gi|312979658|gb|ACRM01000007.1| GENE 59 48686 - 49666 1069 326 aa, chain + ## HITS:1 COG:SA2480 KEGG:ns NR:ns ## COG: SA2480 COG3386 # Protein_GI_number: 15928274 # Func_class: G Carbohydrate transport and metabolism # Function: Gluconolactonase # Organism: Staphylococcus aureus N315 # 1 325 2 324 324 544 80.0 1e-154 MLDNKLPKLTYSGKSKSVVPIVSESELQTVTAEPWLEISDEGLQLEGLIFDREHNLFLCE VFGGKIFKVNLPSKDISVAFQSEKQNPAAVKIHKDGRLFTCYLGDFESTGGIFATDEHGE YFEDIISDINTDYCIDDMVFDSKGGFYFTDFRGYSTNPKGGVYYVSPDFKTVTPVIQNIS VANGIALSTDEKVLWVTETTTNRLHRIQLEDDGVTIAPFGATIPYYFTGHEGPDSVCIDS DDNLYVAMYGQGRVLVFNKRGYPIGQILMPGRDEGKMLRSTHPQFIPGTNQLLICTNDIE NNSEGGSMIYTVEGFAKGHESYQFQS >gi|312979658|gb|ACRM01000007.1| GENE 60 49845 - 51491 1768 548 aa, chain + ## HITS:1 COG:SA2279 KEGG:ns NR:ns ## COG: SA2279 COG1109 # Protein_GI_number: 15928070 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Staphylococcus aureus N315 # 2 545 41 583 583 610 57.0 1e-174 MKDNWITHKADSLVGSFYDQQSYQFQQEGFETTLSFGTAGIRGQFGLGPGRLNRYTIQRL ALGIAYYLQDNMAQPSIVIHYDIRHLSAEFADIIAHILASHHIKVYVSDTYQTTPQLSYA VRYLQTSAGIMITASHNPKDYNGIKVYGADGAQLDDVASLEVAKYIEQLDDPLHLDIELN ETLIKENILPLPKDINQYYFAEINQLIGDIPPSNLNVVYTSLHGTGTPIIPKVLSHLHFN KIELVDAQCKIDPDFSSVKSANPEEHEAFDLAIKQAQYSKADLIIATDPDVDRMGFVERD HDGHIHYFNGSEIGALMIKYLVDYRTLPKQPVMIQSIVSGELGKRFAKQHGVTVKEVLIG FKFIAKAIRELREDETFIFAYEESYGYLAGEFVRDKDAIQVVPLVIKYASILKNEGKTLH DALTDIYEEVGYYRDQPTSKIFEGKKGQQEIATLMEHLRQHIPDTLGGLKVIAVEDYQSQ ERINKDDGTTESIALPKSNVIRLIFDEGFVALRPSGTEPKLKFYLSLNVDDFEQVSHDIY QYIFNDNK >gi|312979658|gb|ACRM01000007.1| GENE 61 51573 - 52427 818 284 aa, chain - ## HITS:1 COG:SA2088 KEGG:ns NR:ns ## COG: SA2088 COG0829 # Protein_GI_number: 15927874 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreH # Organism: Staphylococcus aureus N315 # 71 284 1 214 214 264 61.0 2e-70 MVQHQFDSKPSWTGQLDLTVFNNDERSVARNIFFEKALKVIRPVYLNFSKIPTFYIVNVG GGYLDGDRYRMNINVEEEAKVTLTSQGATKIYKTLNDCVKQYQTFNIAKDGYMEYVGDPI IAYERAKFFQHNVFNLDKSASMFYTDILTPGYSEKDTPFTYDYMHLINEIYVDDVLITYD NLRMHPSETKMSSIGYMENYTHLGSAYCIHPNITQKFIEDVYDEIKDYTKQYDCRIGITQ LPTHGFTVRVLSNLTQEIEEVLTRVQAYIADKLYHRQLDFLRKY >gi|312979658|gb|ACRM01000007.1| GENE 62 52427 - 53041 950 204 aa, chain - ## HITS:1 COG:SA2087 KEGG:ns NR:ns ## COG: SA2087 COG0378 # Protein_GI_number: 15927873 # Func_class: O Posttranslational modification, protein turnover, chaperones; K Transcription # Function: Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase # Organism: Staphylococcus aureus N315 # 1 204 1 204 204 362 89.0 1e-100 MANPIKIGVGGPVGAGKTQLIEKLVRRLSKDMSIGVITNDIYTKEDQKILVNTGVLPEDR IIGVETGGCPHTAIREDASMNFAAIDELLDRHEDIELIFIESGGDNLAATFSPELVDFSI YIIDVAQGEKIPRKGGQGMIKSDYFIINKTDLAEFVGASLDQMAEDTKTFRGNRPFTFTN LKTDDGLDNVIEWIERDALLKGLA >gi|312979658|gb|ACRM01000007.1| GENE 63 53054 - 53743 681 229 aa, chain - ## HITS:1 COG:SA2086 KEGG:ns NR:ns ## COG: SA2086 COG0830 # Protein_GI_number: 15927872 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreF # Organism: Staphylococcus aureus N315 # 1 229 1 229 229 390 80.0 1e-108 MIDHSHLRLFQFCDSQFPTGAFSHSFGLETYIQRQAVHDANSFKEWLELFLNEQLTYSDG LAMRLVYNALNNGDTEKVLQLDQLIYVQSLPRETRIGAKQMGTRMVKLAMELYDSPWIKW YHQQMKDKRAKLHPAICFTMLGHYLGVDIETIIDYYLYQNVSSLTQNAVRAIPLGQTIGQ QVVTEMIPYIERTRQHILTLNEEDFGLTAPGLELNQMEHENVNVRIFIS >gi|312979658|gb|ACRM01000007.1| GENE 64 53736 - 54188 657 150 aa, chain - ## HITS:1 COG:SA2085 KEGG:ns NR:ns ## COG: SA2085 COG2371 # Protein_GI_number: 15927871 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Urease accessory protein UreE # Organism: Staphylococcus aureus N315 # 1 150 1 150 150 247 90.0 6e-66 MIVEDIQGNIANLSAEEKQKHVEKVYLENSDLVKRIQRVTTDHGNEIGIRLKQPIDLQYG DILYQDDNNMIVVDVNSEDLLVIKPRNIQEMGDIAHQLGNRHLPAQFTETEMLVQYDYLV EDLLKTLGIPYSHEDRKVNKAFRHIGHSHD >gi|312979658|gb|ACRM01000007.1| GENE 65 54200 - 55915 2382 571 aa, chain - ## HITS:1 COG:SA2084 KEGG:ns NR:ns ## COG: SA2084 COG0804 # Protein_GI_number: 15927870 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) alpha subunit # Organism: Staphylococcus aureus N315 # 1 571 1 571 571 1016 89.0 0 MSFKMTQSQYTSLYGPTVGDAVRLGDTNLFATVEKDYANYGEEATFGGGKSIRDGMAQNP NVTRDDRKVADLVLTNALIIDYDKIVKADIGVKNGYIFAIGKAGNPDIMDNVDIIIGSTT DIISAEGKIVTAGGIDTHVHFINPEQAEVALESGVTTHIGGGTGASEGAKATTVTPGPWY IHRMLEAAEDLPINVGFTGKGQAVNHTALIEQIHAGVIGLKVHEDWGATPSALSHALDVA DEFDVQIALHADTLNEAGFMEDTMAAVKDRVLHMYHTEGAGGGHAPDLIKSASYPNILPS STNPTLPYTHNTVDEHLDMVMITHHLNASIPEDIAFADSRIRKETIAAEDVLQDMGVFSM VSSDSQAMGRVGEVITRTWQVAHRMKEQRGALEGDTDYNDNNRIKRYIAKYTINPAITHG ISDYVGSIEKGKLADLVLWNPAFFGVKPELVVKGGLINSAVNGDANASIPTSEPMKYRKM YGQYGANKQHTAITFVSKTAYENGIYNQLNLERMVRPVHGIRNLTKKDMKNNDATPKLDV DPQTYEVFVDGEKITSEPATELPLAQRYFLF >gi|312979658|gb|ACRM01000007.1| GENE 66 55915 - 56322 668 135 aa, chain - ## HITS:1 COG:SA2083 KEGG:ns NR:ns ## COG: SA2083 COG0832 # Protein_GI_number: 15927869 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) beta subunit # Organism: Staphylococcus aureus N315 # 1 135 1 135 136 188 74.0 2e-48 MKPGEIKIKNTEIEINQGHFETVINVKNTGDRPIQVGSHFHFFEANKGLKFDREKAYGKH LDIPAGAAVRFEPGDEKKVQLVEYAGNRRIYGFRGLVNGEIDEDRVYRPTGKNDEYAAPK GDNGEKNMNKMGGKQ >gi|312979658|gb|ACRM01000007.1| GENE 67 56336 - 56638 469 100 aa, chain - ## HITS:1 COG:SA2082 KEGG:ns NR:ns ## COG: SA2082 COG0831 # Protein_GI_number: 15927868 # Func_class: E Amino acid transport and metabolism # Function: Urea amidohydrolase (urease) gamma subunit # Organism: Staphylococcus aureus N315 # 1 100 1 100 100 172 91.0 1e-43 MHFTQREQDKLMIVVAAEVARRRKARGLKLNYPEALALISDELLEGARDGKTVADLMSYG KQILNKDDVMEGVDSMLTDIEIEATFPDGTKLITIHHPIV >gi|312979658|gb|ACRM01000007.1| GENE 68 56839 - 57741 1192 300 aa, chain + ## HITS:1 COG:SA2081 KEGG:ns NR:ns ## COG: SA2081 COG4413 # Protein_GI_number: 15927867 # Func_class: E Amino acid transport and metabolism # Function: Urea transporter # Organism: Staphylococcus aureus N315 # 1 300 1 301 301 252 47.0 7e-67 MKYVEIFLKNIAQVIFMNNKWSGLCILIGLFIANWKIGLGATVGSLIALILAPHFNYSED EVHDGLAGYNSVLTAIGLALFLEASLVNWIVLIVATTLTLPVGAAIREILKPYGLPMLTF PFVFMTWLILAMGMQFSKMHITIDILPTKIKHPDISHSHVNFISGIITNFSEIFLVTSII GSLLIIIGIFIGSVKGGIYAVVSSILAVICITLLGGDYPTITDGLYGYNSILTGIALGAT FKTKFNPILAVITGLLLTVVMHGALATTLAPIGLPIFTAPFIFATWLVMFAGKEQHEVKS >gi|312979658|gb|ACRM01000007.1| GENE 69 57860 - 58738 1245 292 aa, chain + ## HITS:1 COG:BS_rbsK KEGG:ns NR:ns ## COG: BS_rbsK COG0524 # Protein_GI_number: 16080645 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Bacillus subtilis # 1 290 1 292 293 266 51.0 4e-71 MKRIYVVGSMSMDLVVSTDQVPSKGETVLGNTFFTTPGGKGANQAVAAARLGDHVHMVGC IGDDMLGKQILENLKHNHVNVEYVKKVKGPSGTAHITLADNDNSIIVVPSANHKVTVSLV DSALSKANKGDIVLLQQEIPADVVAHTVHYCYEHELTSILNPAPYRDISDDILEQVTYLT PNETESENMFEGDIDQALERYPDKLIVTQGALGAVFYDGLEQIEIQGIEREVKDTTGAGD TFNGALAVGLQKDDSLAKAIAFANVAASHSVTALGAQGGMPTINDIAQDLDM >gi|312979658|gb|ACRM01000007.1| GENE 70 58878 - 60017 1410 379 aa, chain + ## HITS:1 COG:no KEGG:SH0302 NR:ns ## KEGG: SH0302 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 379 1 379 379 570 75.0 1e-161 MTKTYLLSTLIVLISIVLCACQFSTLSSSKKDTKKDKENIANIYAKKSTQNKKDWQVYQG DIAHVFYHPVITEPKVAFTQEKNQAKGNFDWMITADEFKRSLNELYKHHYILIDPHEAYD LKGKTITRKELKLPKGKKPLILSIDDMNYYEYMRGHGYADRLVLDQKQHVVSETKDKNGK VTTSETNDIVPILNQFVKDHPDFSLNGQKGVVALTGYNGVLGYRTNELNNKDYLKRKKDA EKVVKAMKRDGWTFASHSWGHIDFANSSYDQIVRDTKRWKNEVEPIIGKTDVFIYPHGAQ DRGSKAYQYLVRDEGFKFLAGVGPNNFTDIGNDSVYQDRVAIDGLNLYDFKYKLKPFLDP SKVYSETDRQYFKGDKSYQ >gi|312979658|gb|ACRM01000007.1| GENE 71 60183 - 61334 1103 383 aa, chain + ## HITS:1 COG:SA0598 KEGG:ns NR:ns ## COG: SA0598 COG1686 # Protein_GI_number: 15926319 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanyl-D-alanine carboxypeptidase # Organism: Staphylococcus aureus N315 # 28 372 30 376 431 257 42.0 2e-68 MFLKVTQSIGILSLFTLFGTSISDAAETPVDITNKEGNVAVSSNYEPDGVTLTTQQGQIL YNFQGNKEADPASLSKMMTLYLTLEAVHQGKLKLDDKVKITSAYDQLSKKPNLTSVPLNQ GQIYTIKDLLTQAALPSSNSAAMILGEQVSGNTSTFTDKMNAQAKAFHMKHTHFVNPAGA ANDLLGQQAPKKYRKDIYPKSTSEDIAILSHHLIAKHPKILNITQLSQDTQKGYTFNNTN LSIKHEPLYLKGTDGLKTGTSDKGYNIALTNQQNHLRLNEVVMNVAPYMDNNAKYNRNRI GNAIFKHYRKEYEYKKVLSKGEHKIGGKTYKVDKNLYDTVPKDNKKWDIRINKDGKAYVH YKRDFLPETTYPRVNAKKVWKWF >gi|312979658|gb|ACRM01000007.1| GENE 72 61429 - 62013 649 194 aa, chain - ## HITS:1 COG:CAC3433 KEGG:ns NR:ns ## COG: CAC3433 COG1309 # Protein_GI_number: 15896674 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Clostridium acetobutylicum # 5 172 2 169 185 77 32.0 1e-14 MNNQDLRVQRTKKALITTFSDLLETKSFDNITIQDLCEKANVRRSTFYRHFNDKYDLLNH IVGTLIEYFRTLHLPEIDPKDPRQFFNKFMKDILLFISDNKAMVKSVISINIYSEVYQIL YNQIYAVVKRQIEFDKQIGQFYIDEFIYGEFLAGGILSVILNWIQYGQQSIDDVSSDIVT MICGAREVHLKLLK >gi|312979658|gb|ACRM01000007.1| GENE 73 62206 - 63981 1643 591 aa, chain + ## HITS:1 COG:SA0102 KEGG:ns NR:ns ## COG: SA0102 COG4716 # Protein_GI_number: 15925810 # Func_class: S Function unknown # Function: Myosin-crossreactive antigen # Organism: Staphylococcus aureus N315 # 1 591 1 591 591 1002 78.0 0 MYYSNGNYEAFARPKKPEHVEQKSAYLIGSGLASLAAACFLIRDGQMDGSNIHILEELSK SGGSLDGTELPMKGYVMRGGREMENHFECLWDLFRSIPSLEIEDASVLDEFYWLNKEDPN YSRCRVIEERGQRLPTDGDFTLTKQAMKDILQLCLMKEEDLNDVTISDVLSEDFMNSNFW IYWKTMFAFEPWYSAMEMRRYLMRFVHHIGGLADFSALKFTKYNQYESLVRPMVAYLTSH GVQFEYNVQVLDVKVDVTTKDKVAKTIELKRNGNKETIQLTPDDLVFITNGSITESSTYG DNDTPAPPTKDIGGSWNLWRNLAKQSPEFGNPEKFYKDLPDKSWFVSATVTTNNKTVIEA IERLCKRDPLAGKTVTGGIITVNDSKWQMSFTVNRQQQFKQQPKDEVSVWVYALYSDEKG DYIHKPIVECSGHEICQEWLYHMGLPIDQIECLATQHCNTIPVYMPYICSYFMPRAIGDR PLVVPQHSRNLAFIGNFAETERDTVFTTEYSVRTAMEAVYQLLDIDRGVPEVMATEFDIR VLLDAMYELNDRKDLKTLAEQNKIQQVALHTFLKKIKGTFVEELLKQHKLL >gi|312979658|gb|ACRM01000007.1| GENE 74 64042 - 64236 255 64 aa, chain - ## HITS:1 COG:CAC1464 KEGG:ns NR:ns ## COG: CAC1464 COG0178 # Protein_GI_number: 15894743 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Clostridium acetobutylicum # 1 64 692 755 755 75 48.0 2e-14 MIDEGNTVILIEHNLTMMTEADGFIDIGPFAGKHGGQLLYAGEPKGLLDINNSVTAKHLR RYIE >gi|312979658|gb|ACRM01000007.1| GENE 75 64402 - 65187 834 261 aa, chain - ## HITS:1 COG:SA2490 KEGG:ns NR:ns ## COG: SA2490 COG2162 # Protein_GI_number: 15928284 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Arylamine N-acetyltransferase # Organism: Staphylococcus aureus N315 # 1 261 3 265 266 286 55.0 2e-77 MDIKVIEDYLNIESQRYPQPTLDALNYYMERFMLTVPFENISVQNKEKISVDLDYLFNKF IYQHRGGFCYEMNHFFGSYLEAKGFKVFRMSATVHQPNGNYSPKGSHLSLAVLINNGYYI ADVGFGDLPLQALPITSIEATQIVFEKTGQFRAIFETPTTYLLQKLEETTWVTRYKAEFI SRDIHDFDKMINYNTSHPESIFVKQLMITKPQNFGRATMSYHHLTLTKRYKKEQFAVTRE NYKDFLKTYFNLDVTILPLEK >gi|312979658|gb|ACRM01000007.1| GENE 76 65268 - 65903 717 211 aa, chain - ## HITS:1 COG:no KEGG:SH0308 NR:ns ## KEGG: SH0308 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 211 1 211 211 199 62.0 5e-50 MKGLILSSFYASKKSLITYLIIGIVLSIVFAFFSPMMCCFMLMVMLLSPVSDNLKREKDS KWMYYVSTLPTHRHTYVKAYFAFYGLLILLGLIIGAIICLIVTQDIMVTLFSAFIGIGMA CTYALMFPLTFKFGPENSNVIMLTTAVVAVALFLSMWFFAVMPILIKAGSISKIASNPLV LVATGSYALLGVIIFVISYFSSLSIFKKQEL >gi|312979658|gb|ACRM01000007.1| GENE 77 65903 - 66748 247 281 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 1 239 1 246 305 99 28 4e-20 MTHLLQVQQLNKSYKNSNFELNDISFTLNPGEVIGLIGKNGSGKSTLINTLVGNRFKDSG EISFFNQIISEKDKDYKEHVGVVFDDLRVPNKLTITEIDKVFLNIFKHWNSDQFFNLIQS FELPKNNQISTFSRGMRMKAALAIALSHETKLLILDEATAGMDVSGREEVLEILEDYVSK GHGILLSSHISEDMEQLATKLIFMRDGHILLQEDKHILLTDYGIIETDETSPLDLPQEVI IASRIRHGQRQTLVKQRQHFEQARPLQSIDDATKLIMRGDK >gi|312979658|gb|ACRM01000007.1| GENE 78 66779 - 67501 610 240 aa, chain - ## HITS:1 COG:no KEGG:SH0310 NR:ns ## KEGG: SH0310 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 240 1 238 238 167 44.0 3e-40 MKIGRFIITLLIGGLIGGCIALFIDYNHSFHFFGNYHYATHSNVILISLICVALILVLSM YLIMIQKKAVHYKRLSETHIDEDEADSYDKKANLAYMQNSFIYYLELTISFIALFIIVLG NGNSSASSWALLPFMTTIISSVITGLFYRKFDSRYPKLGEKNYAEKLINILDEGERHIYF NSLFKTFYINLSLIMIGAIFLGFYSLETGHSQTLGIFILIILFIYNGFSHLLKTYKFYHS >gi|312979658|gb|ACRM01000007.1| GENE 79 67498 - 67701 257 67 aa, chain - ## HITS:1 COG:SA0337 KEGG:ns NR:ns ## COG: SA0337 COG1476 # Protein_GI_number: 15926050 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 66 1 66 67 92 80.0 2e-19 MRNRLKELRAREGYNQTQLAKKAGISRQTVSLIERNDFTPSILTAIKIARIFNEPVESIF IIEEEDL >gi|312979658|gb|ACRM01000007.1| GENE 80 67828 - 68151 100 107 aa, chain - ## HITS:1 COG:L153086 KEGG:ns NR:ns ## COG: L153086 COG1959 # Protein_GI_number: 15672540 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Lactococcus lactis # 1 100 54 152 156 106 55.0 1e-23 MVYSTTGKNGGFTLRKKLKDITFYDVFLAIEGRGNIFSSQHLLTNFLGEKEGHKAQQCNI SIALNHIEHTLISTLSNINLDDIYQDIIKLYNLEDIIQWIRLNSKTL >gi|312979658|gb|ACRM01000007.1| GENE 81 68175 - 68309 156 44 aa, chain - ## HITS:1 COG:L153086 KEGG:ns NR:ns ## COG: L153086 COG1959 # Protein_GI_number: 15672540 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Lactococcus lactis # 1 44 1 44 156 60 68.0 9e-10 MKLSTGWEQAIYVLLILNQLPRQSVMTSTALSKRLKVSDSYLKK >gi|312979658|gb|ACRM01000007.1| GENE 82 68445 - 69365 958 306 aa, chain + ## HITS:1 COG:BS_yoaV KEGG:ns NR:ns ## COG: BS_yoaV COG0697 # Protein_GI_number: 16078937 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Bacillus subtilis # 38 296 29 282 292 82 25.0 1e-15 MKKHLNTSITFYMSILFTTIFMGSSFPTGKYLISNEHVPPMLLGGWRFVIAGCMMLILTF MRNGERGILPTSKGNSYKGFILVFVIGFLQTAGTMGLLNFAMAFGVSSSISSILLFTNPL WLAFLAHFILDERLTKIKITSLILGVFGVGLCLGLDETLFGWGTLFALAGSLCWSINTIV TKKVVFDKGPWVLTGWQLLFGGMFMLIMSLVLKEHYTLSSLNHWGWIWFFWLIIPASVGS FGLWFYSLSQRGATTASSFLFLVPLFSTLFSIIGLREPFTLHLILGGLCVVVALMLIQRQ PRKNIL >gi|312979658|gb|ACRM01000007.1| GENE 83 69601 - 70770 1436 389 aa, chain + ## HITS:1 COG:BS_yfhI KEGG:ns NR:ns ## COG: BS_yfhI COG2814 # Protein_GI_number: 16077921 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Bacillus subtilis # 5 385 9 389 397 250 41.0 3e-66 MKDNRMMFFIFMLGTFTVGMAEYVVTGLLTQIASDMKVPISSAGLLISVYAISVALIGPL MRVFTLKVRAQRLLPVLMAIFIISNIIGMLAPNFPILLLSRLLSASMHAPFFGVCMSVAA AVAPRGKKPQAIALVQAGLTIAVMIGVPFGSFLGGFANWRFVFGVMILLAVITMLGMMKF VPHVALSTEASVKKELKVFKNPHILIVMAIIVFGYSGVFTTYTFMEPMIHKYAPFGIVGL TVCLFMFGLGGVVGNLLTGNVPEHKLTQYLFYTFVLLFITIVLFVTAVHSAILAIIICFL FGFGTFGTTPLLNSKVILSAHEAPLLASTLAASVFNIANFLGAIVGSILLSMGFPYLTIT FVSGGIIILGIIINTINHLYEKKYVTFDH >gi|312979658|gb|ACRM01000007.1| GENE 84 70836 - 72377 1609 513 aa, chain - ## HITS:1 COG:SA0140 KEGG:ns NR:ns ## COG: SA0140 COG0737 # Protein_GI_number: 15925849 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 1 511 1 509 511 643 60.0 0 MTQLSFYIVSDIHGYIFPTDFSKRNQNLPMGLLKVNQLIEQERQHDDYSFKIDNGDFLQG SPLCHYLATEEQSSQPLTDIYNRLNFDFGTLGNHEFNYGLPYLQNTLNHLHHPILCANIF DHNNAPLTGQGVNYFKRGDITIGVIGLTIQFIPNWEQPAHIKGLTFNSAVETLKCILPDV RKKSDVVVVSYHGGFEKSLDTNTPTEELTGENEGSDILERFHKDIDVLITGHQHRDIAMI KNDTAIIQPGTRGTEFGKVTLTLDHEHRITDKQSTLVSVPSHLSLTLSNNDHSLLNELED WLDTDITTLSEPMLVTHQFEARTHPHSLINLINYILLEKSGADIASTALFDSAKGFNQQV TMRDIINNYPFPNTFQVLELNGKGIKDALEKSASYFSVNDNNEITVSDTFLSPKPQHFNY DMYGGISYTIHAGAPVGQRVSDIKVGASPLEDTKTYTICVNNYRAVGGGDYKMFAEAPVV KDIQEEGAQVLIDYMTQHDVSYIPQVVNFKVII >gi|312979658|gb|ACRM01000007.1| GENE 85 72477 - 74114 2002 545 aa, chain - ## HITS:1 COG:no KEGG:SLGD_00529 NR:ns ## KEGG: SLGD_00529 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 545 1 507 507 619 60.0 1e-176 MKWIKVLSSTILASAITLSATPISHAAPNQTTTQTVAFDTSHGQTAGAADWVIDGGFSDY ADSMRQQGYTVKQIDGESNITPNTLRGINILVLPEANIPFKKREQQAMLNFVEKGGNIIF ISDHYNADRNLNRFDSSEVMNGYRRGAYQDITKDLTNEEKHSKAMRNVKSSDWLSEHFGV RFRYNALGDLNTQNIVSSSDSFGITEGVHSVSMHAGSTLAITDPTKAKGIIFLPDHLSQK QRWSHAVDQGIYNGGGIAEGPYVAISKVGKGKAAFIGDSSLVEDSTPKYVREDNGRTKKT YDGFKEQDNSKLLKNITTWFGKQDHTPNLKETGIKLDQPTPLLNFEQPQHSTEPEKEPWS QPPTGYKWYDRSTFKLGSYGSTSSQLNSKHRNHGSHNDNNKANSTEDNTTENNHSQEDTN TSQSSQDTTTSNSMISSNNVQFHLPDNVSVNQPFNIQVELTNMAKNTTIDHLKLGIYQDG GRQLARFSQDGQTYDTVGYSQEQSVTTDDQGNATLTFTAKTSEPISGANIRLKQGSKTLA TGSIQ >gi|312979658|gb|ACRM01000007.1| GENE 86 74365 - 75327 1252 320 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 320 1 318 318 454 82.0 1e-127 MKQLKYLLVLALSVIIFAAACGNNSSLDNNKSSNSDGGSGSSKDGYTPKELTVQFVPSQN ADTLEAKAKPLEKLLSKKLGIPVKVSVSTNYNTIVEAMKSKKVDVGFLPPTAYTLAHDQK AADLLLQAQRYGVNEDGSSNKKLVKDYKSEILVKKNSGINSLKDLKGKKIALQDVTSTAG YTFPISTIKKDTGIDATKDMKIVNMKGHDQAVISLLNGDVDAAAVFQDARNIVKKDQPNV FKDTKILKLTKPIPNDTISVRPDMNKDFQDKLKKAFKDISKTKEGHKIISEVYSHEGYTD AKDSDFDIVRKYEKEVQNMK >gi|312979658|gb|ACRM01000007.1| GENE 87 75466 - 76239 309 257 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 4 241 2 228 245 123 34 3e-27 MSQIEFKNVSKIYPNGHVGLKDINLNIEKGDFAVIVGLSGAGKSTLLRSVNRLHDITSGD ITIEGKSITKAKGKELLMMRRNIGMIFQHFNLVKRSTVLRNVLSGRVGYHPTWKMVLGLF PKEDKIKAMDALERVNILDKYDQRSDELSGGQQQRISIARALAQEPAIILADEPVASLDP LTTKQVMDDLKKINEELGITILINLHFVDLALEYGTRIIGLRAGELVYDGPASEANEDVF NEIYGRKLNDDEKLGVE >gi|312979658|gb|ACRM01000007.1| GENE 88 76241 - 77041 1062 266 aa, chain + ## HITS:1 COG:SA0136 KEGG:ns NR:ns ## COG: SA0136 COG3639 # Protein_GI_number: 15925845 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 266 1 266 266 370 78.0 1e-102 MATPTTSKYDQYLNKKFSFKTSLTLFLVIALVVWSFLYTGFSFSDLMVGIPQIGSFFGQM VPPDWSYLSTITKPMLDTIRMAIVGTFLGSIVSIPVALLCASNIVKTKWITVPSRFILNI VRTIPDLLLAAVFVAVFGIGQIPGVLALFILTICVIAKLFYESLETIDPGPMEAMTAVGA NKTKWIMFGVVPQTMSTFLSYVLFAFEINIRASAVLGLVGAGGIGLFYDSTLGLFQYPKT AMIILFTLVIVVIIDYVSSKVREKLA >gi|312979658|gb|ACRM01000007.1| GENE 89 77038 - 77865 1242 275 aa, chain + ## HITS:1 COG:SA0135 KEGG:ns NR:ns ## COG: SA0135 COG3639 # Protein_GI_number: 15925844 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, permease component # Organism: Staphylococcus aureus N315 # 11 275 7 271 271 371 84.0 1e-103 MTREQHQLEKKYPVRSKEHKQRMIKHWLITIVVLAIIVWGFAGMPALELKSKSIEILKSI FNGLFHPDWGYVYIPAGEDLLRGLLETFAIAVIGTFIAAVICIPFAFLGARNLVKVRPVT GITKFILSVIRVFPEIVMALIFIKAVGPGSFSGVLALGIHSVGMLGKLFIEDIESLDFSS AEALKASGANKTKTLVFAVIPQILPSFLSLILYRFELNLRSASILGLIGAGGIGTPLIFA LQTRSWDRVGIILIGLVIMVAIVDFISGAIRKRIV >gi|312979658|gb|ACRM01000007.1| GENE 90 78607 - 78693 59 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MILLINILLGCEKMNEVAISVVPNTYLK >gi|312979658|gb|ACRM01000007.1| GENE 91 78928 - 79410 658 160 aa, chain + ## HITS:1 COG:SA2454 KEGG:ns NR:ns ## COG: SA2454 COG0454 # Protein_GI_number: 15928247 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 160 1 160 166 196 58.0 2e-50 MIFRNVVAGDLESLIQLENEGFTKEEAATTQALKQRIEIIPDTFIVAEENNQIVGYINGP AISNKCITDDLFASIRPNPNMGGYLSVLGLVVAKDFQHQGIAGQLLNNFENIARQHARFG VTLTCRDTLVSFYESHGYINKGLSDSNHANVAWYNLVKEL >gi|312979658|gb|ACRM01000007.1| GENE 92 79716 - 81426 1805 570 aa, chain + ## HITS:1 COG:no KEGG:SH0326 NR:ns ## KEGG: SH0326 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 532 1 511 3608 362 83.0 3e-98 MSKKEKDFKRSFGEEKARVKLYKSGKHWVKAGIRELQLLRSLGLSFFDKDVEKTNDLPKS TQHNLKTQALKTTGLVGGAFTFAMLNDHHAFAASETPMTSEIASNSETVANQNSTTVTNS ETSTTESISSQTSTSQDATSSTNSTEKSTSSSTTDSHTSTDSTSDKSTSNSEKQDSSMSN SDTKASSSSTTDNSTSNNSATSEKDTKASSSSTTDNSTSNNSATSEKDTNSQANTTSTDS QKGSDSTSDNSITSTSTKDNQIRKNSTESNSITSSNSTSDSNSDSTVSTNSTTSQLTSTS ESQISTDLGSTLLVNDSTSTSTSTAPLKLRTFSRLATTTFAAATSTTNTYTGAGTDTNYN IPIYYKLTTVNNGTSMTFTYTVTYDNPATTTVEKPTTLSNSYAIYNTGTSYQTMFTLGNG YGTPSSATNYITDSTGAKISNPVSNTTPMVKQGNGYTWANGYQMNGYQAKQGYGLTTTWT VPINSGGDTSFTFDPYSTSVTGGTDFFNGQKVNVTDPTSTANSQSASTSTANSQSASTST ANSQSASTSTANSQSASTSTANSQSASTST Prediction of potential genes in microbial genomes Time: Sun May 29 09:06:55 2011 Seq name: gi|312979657|gb|ACRM01000008.1| Staphylococcus hominis subsp. hominis C80 cont1.8, whole genome shotgun sequence Length of sequence - 177292 bp Number of predicted genes - 168, with homology - 159 Number of transcription units - 90, operones - 35 average op.length - 3.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 413 268 ## + Prom 415 - 474 4.5 2 2 Op 1 . + CDS 560 - 1855 923 ## COG0201 Preprotein translocase subunit SecY 3 2 Op 2 . + CDS 1865 - 3433 1270 ## SH0328 hypothetical protein 4 2 Op 3 . + CDS 3423 - 4985 1358 ## SH0329 hypothetical protein 5 2 Op 4 . + CDS 4969 - 5520 481 ## SH0330 hypothetical protein 6 2 Op 5 2/0.154 + CDS 5501 - 7891 2646 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) 7 2 Op 6 4/0.000 + CDS 7909 - 9414 1579 ## COG0438 Glycosyltransferase 8 2 Op 7 . + CDS 9411 - 10751 1120 ## COG1442 Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases 9 2 Op 8 . + CDS 10777 - 11253 471 ## COG0225 Peptide methionine sulfoxide reductase + Term 11257 - 11311 -0.8 10 3 Tu 1 . - CDS 11304 - 11657 583 ## SSP0615 hypothetical protein - Prom 11733 - 11792 10.4 - Term 11710 - 11783 22.1 11 4 Tu 1 . - CDS 11795 - 12148 665 ## SH0346 hypothetical protein - Prom 12174 - 12233 12.5 + Prom 12148 - 12207 9.1 12 5 Tu 1 . + CDS 12361 - 13539 1238 ## COG0477 Permeases of the major facilitator superfamily + Term 13557 - 13599 8.0 13 6 Tu 1 . - CDS 13852 - 14412 454 ## SH0350 hypothetical protein - Prom 14492 - 14551 8.0 - Term 14517 - 14564 12.3 14 7 Op 1 . - CDS 14596 - 15537 1217 ## COG2113 ABC-type proline/glycine betaine transport systems, periplasmic components 15 7 Op 2 . - CDS 15537 - 18080 3161 ## COG2409 Predicted drug exporters of the RND superfamily - Prom 18158 - 18217 5.8 - Term 18253 - 18303 6.2 16 8 Tu 1 . - CDS 18322 - 18489 260 ## - Prom 18627 - 18686 12.1 17 9 Tu 1 . - CDS 18743 - 19627 855 ## COG0583 Transcriptional regulator - Prom 19666 - 19725 6.7 + Prom 19602 - 19661 9.1 18 10 Tu 1 . + CDS 19884 - 20495 679 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Term 20540 - 20580 -1.0 + Prom 20528 - 20587 10.0 19 11 Op 1 . + CDS 20614 - 22863 2665 ## SH0356 hypothetical protein + Term 22876 - 22929 12.0 + Prom 22865 - 22924 7.3 20 11 Op 2 . + CDS 23135 - 24712 1905 ## COG1288 Predicted membrane protein + Term 24713 - 24775 21.4 - Term 24701 - 24761 21.0 21 12 Tu 1 . - CDS 24767 - 26968 2535 ## COG1705 Muramidase (flagellum-specific) - Prom 27141 - 27200 7.1 + Prom 26941 - 27000 8.6 22 13 Tu 1 . + CDS 27233 - 30061 3790 ## COG1511 Predicted membrane protein + Term 30071 - 30122 16.2 - Term 30059 - 30110 12.4 23 14 Tu 1 . - CDS 30117 - 30623 689 ## gi|228475744|ref|ZP_04060462.1| hypothetical protein STAHO0001_0368 - Prom 30708 - 30767 7.2 + Prom 30733 - 30792 7.7 24 15 Tu 1 . + CDS 30826 - 31347 612 ## SH0362 hypothetical protein + Term 31359 - 31397 7.1 - Term 31345 - 31385 7.1 25 16 Tu 1 . - CDS 31393 - 31791 551 ## SH0364 hypothetical protein - Prom 31998 - 32057 11.3 26 17 Tu 1 . + CDS 32123 - 32647 610 ## SH0365 hypothetical protein + Term 32651 - 32696 9.1 + Prom 32700 - 32759 9.1 27 18 Op 1 . + CDS 32901 - 34136 1048 ## PROTEIN SUPPORTED gi|149002994|ref|ZP_01827905.1| 50S ribosomal protein L33 + Term 34167 - 34204 6.2 + Prom 34184 - 34243 7.7 28 18 Op 2 . + CDS 34273 - 35034 992 ## COG0627 Predicted esterase + Term 35039 - 35083 12.5 - Term 35027 - 35071 9.3 29 19 Tu 1 . - CDS 35077 - 35205 130 ## - Prom 35358 - 35417 8.7 + Prom 35323 - 35382 10.3 30 20 Tu 1 . + CDS 35454 - 36596 1000 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) + Term 36601 - 36651 7.4 - Term 36589 - 36637 6.1 31 21 Tu 1 . - CDS 36675 - 38315 2097 ## COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes - Prom 38475 - 38534 6.4 + Prom 38376 - 38435 6.4 32 22 Op 1 . + CDS 38463 - 38918 538 ## COG1846 Transcriptional regulators + Term 38927 - 38965 -0.2 33 22 Op 2 . + CDS 38992 - 39129 96 ## + Term 39308 - 39354 1.2 + Prom 39236 - 39295 8.1 34 23 Op 1 . + CDS 39386 - 40003 375 ## COG4330 Predicted membrane protein 35 23 Op 2 . + CDS 40000 - 40278 162 ## SH2202 hypothetical protein + Prom 40317 - 40376 7.8 36 24 Tu 1 . + CDS 40440 - 40541 231 ## + Term 40546 - 40599 15.3 + Prom 40655 - 40714 7.5 37 25 Op 1 5/0.000 + CDS 40907 - 41569 517 ## COG3944 Capsular polysaccharide biosynthesis protein 38 25 Op 2 3/0.000 + CDS 41582 - 42289 631 ## COG0489 ATPases involved in chromosome partitioning 39 25 Op 3 1/0.538 + CDS 42286 - 43053 826 ## COG4464 Capsular polysaccharide biosynthesis protein 40 25 Op 4 . + CDS 43087 - 44895 1456 ## COG1086 Predicted nucleoside-diphosphate sugar epimerases 41 25 Op 5 . + CDS 44972 - 46222 647 ## gi|729020|sp|P39854|CAPE_STAAU RecName: Full=Protein CapE gi|567036|gb|AAA64644.1| type 1 capsule synthesis gene 42 25 Op 6 . + CDS 46227 - 47420 419 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 43 25 Op 7 8/0.000 + CDS 47432 - 47941 305 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 44 25 Op 8 8/0.000 + CDS 47953 - 49011 409 ## COG0438 Glycosyltransferase 45 25 Op 9 8/0.000 + CDS 49025 - 50032 1131 ## COG0451 Nucleoside-diphosphate-sugar epimerases 46 25 Op 10 2/0.154 + CDS 50048 - 51190 1090 ## COG0438 Glycosyltransferase 47 25 Op 11 . + CDS 51204 - 52544 1003 ## COG1541 Coenzyme F390 synthetase 48 25 Op 12 1/0.538 + CDS 52559 - 53830 1677 ## COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase 49 25 Op 13 12/0.000 + CDS 53865 - 54995 1066 ## COG0438 Glycosyltransferase 50 25 Op 14 3/0.000 + CDS 55022 - 55618 792 ## COG2148 Sugar transferases involved in lipopolysaccharide synthesis 51 25 Op 15 9/0.000 + CDS 55615 - 56235 601 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 52 25 Op 16 . + CDS 56242 - 57372 1639 ## COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 53 25 Op 17 . + CDS 57388 - 58332 1061 ## COG1316 Transcriptional regulator + Term 58346 - 58390 7.1 - Term 58384 - 58424 4.1 54 26 Tu 1 . - CDS 58441 - 59916 2053 ## COG1785 Alkaline phosphatase - Prom 60066 - 60125 8.4 + Prom 60051 - 60110 10.1 55 27 Tu 1 . + CDS 60297 - 60470 312 ## SH0402 hypothetical protein + Prom 60483 - 60542 6.3 56 28 Op 1 . + CDS 60639 - 60806 269 ## SH0403 hypothetical protein 57 28 Op 2 40/0.000 + CDS 60819 - 61484 694 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 58 28 Op 3 4/0.000 + CDS 61490 - 62386 481 ## COG0642 Signal transduction histidine kinase + Term 62403 - 62461 1.2 + Prom 62411 - 62470 7.2 59 28 Op 4 36/0.000 + CDS 62518 - 63267 313 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Prom 63281 - 63340 4.7 60 28 Op 5 . + CDS 63461 - 65224 1158 ## COG0577 ABC-type antimicrobial peptide transport system, permease component + Prom 65237 - 65296 4.4 61 28 Op 6 . + CDS 65316 - 66080 1114 ## SH0408 hypothetical protein + Term 66091 - 66147 11.9 - Term 66081 - 66133 10.2 62 29 Op 1 5/0.000 - CDS 66177 - 67469 1486 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases 63 29 Op 2 . - CDS 67533 - 68282 180 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Prom 68566 - 68625 15.1 64 30 Op 1 . + CDS 68793 - 70385 1978 ## COG4146 Predicted symporter + Term 70399 - 70450 10.6 + Prom 70397 - 70456 4.5 65 30 Op 2 . + CDS 70476 - 71678 1371 ## SH0409 hypothetical protein 66 30 Op 3 . + CDS 71675 - 72781 1152 ## SH0410 hypothetical protein + Term 72785 - 72829 8.7 + Prom 72783 - 72842 6.0 67 31 Tu 1 . + CDS 72874 - 72984 131 ## + Term 72986 - 73022 -0.8 + Prom 73062 - 73121 5.7 68 32 Tu 1 . + CDS 73289 - 74020 738 ## COG0175 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes + Prom 74036 - 74095 8.7 69 33 Op 1 11/0.000 + CDS 74165 - 76036 2217 ## COG0369 Sulfite reductase, alpha subunit (flavoprotein) 70 33 Op 2 3/0.000 + CDS 76055 - 77776 2207 ## COG0155 Sulfite reductase, beta subunit (hemoprotein) 71 33 Op 3 2/0.154 + CDS 77812 - 78576 839 ## COG0007 Uroporphyrinogen-III methylase 72 33 Op 4 . + CDS 78610 - 79221 565 ## COG1648 Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) 73 33 Op 5 . + CDS 79243 - 80118 1018 ## COG0730 Predicted permeases 74 33 Op 6 2/0.154 + CDS 80164 - 81342 1646 ## COG2046 ATP sulfurylase (sulfate adenylyltransferase) 75 33 Op 7 . + CDS 81361 - 81960 837 ## COG0529 Adenylylsulfate kinase and related kinases + Term 81973 - 82025 10.6 76 34 Tu 1 . + CDS 82388 - 83173 1037 ## COG3942 Surface antigen + Term 83248 - 83298 7.1 + Prom 83285 - 83344 8.5 77 35 Tu 1 . + CDS 83394 - 83636 323 ## gi|228475538|ref|ZP_04060256.1| conserved hypothetical protein + Term 83648 - 83688 6.1 + Prom 83675 - 83734 10.3 78 36 Tu 1 . + CDS 83802 - 85094 1658 ## COG2704 Anaerobic C4-dicarboxylate transporter + Term 85187 - 85237 9.2 + Prom 85377 - 85436 14.3 79 37 Tu 1 . + CDS 85524 - 87146 1591 ## COG1292 Choline-glycine betaine transporter + Term 87165 - 87232 20.5 - Term 87153 - 87218 17.3 80 38 Tu 1 . - CDS 87240 - 87794 554 ## COG1510 Predicted transcriptional regulators - Prom 87890 - 87949 7.3 + Prom 87939 - 87998 10.4 81 39 Op 1 10/0.000 + CDS 88033 - 89523 2025 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 89545 - 89586 5.0 + Prom 89562 - 89621 3.9 82 39 Op 2 . + CDS 89660 - 91366 2182 ## COG2303 Choline dehydrogenase and related flavoproteins + Term 91389 - 91427 5.0 + Prom 91371 - 91430 6.1 83 40 Tu 1 . + CDS 91541 - 92677 1186 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Prom 92697 - 92756 5.8 84 41 Op 1 . + CDS 92808 - 93014 195 ## SH0434 hypothetical protein 85 41 Op 2 1/0.538 + CDS 93078 - 93572 516 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides + Prom 93584 - 93643 8.3 86 42 Tu 1 . + CDS 93704 - 95296 2124 ## COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases + Term 95309 - 95355 11.6 + Prom 95303 - 95362 6.6 87 43 Op 1 1/0.538 + CDS 95510 - 98134 2918 ## COG0574 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase 88 43 Op 2 . + CDS 98141 - 98971 1029 ## COG1806 Uncharacterized protein conserved in bacteria + Prom 99118 - 99177 10.2 89 44 Tu 1 . + CDS 99292 - 100794 1734 ## COG0579 Predicted dehydrogenase + Term 100804 - 100856 14.4 - Term 100878 - 100914 5.0 90 45 Tu 1 . - CDS 100936 - 101826 1225 ## COG3588 Fructose-1,6-bisphosphate aldolase - Prom 101921 - 101980 11.1 + Prom 101885 - 101944 10.3 91 46 Op 1 . + CDS 102003 - 102494 342 ## COG0563 Adenylate kinase and related kinases + Prom 102619 - 102678 7.8 92 46 Op 2 . + CDS 102710 - 104044 1606 ## COG1306 Uncharacterized conserved protein + Term 104110 - 104170 15.8 - Term 104102 - 104154 12.2 93 47 Op 1 . - CDS 104167 - 104805 637 ## SH0456 hypothetical protein - Prom 104869 - 104928 10.1 - Term 104915 - 104955 -0.1 94 47 Op 2 . - CDS 104972 - 105397 317 ## SH0457 hypothetical protein - Prom 105493 - 105552 5.2 + Prom 105678 - 105737 7.1 95 48 Tu 1 . + CDS 105760 - 106575 1152 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen + Term 106577 - 106621 13.4 + Prom 106643 - 106702 6.3 96 49 Tu 1 . + CDS 106777 - 108114 1497 ## COG0160 4-aminobutyrate aminotransferase and related aminotransferases + Term 108129 - 108175 11.4 - Term 108115 - 108163 8.0 97 50 Tu 1 . - CDS 108243 - 109694 2230 ## COG0531 Amino acid transporters - Prom 109920 - 109979 9.8 + Prom 110348 - 110407 5.4 98 51 Op 1 3/0.000 + CDS 110434 - 112098 2443 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 99 51 Op 2 . + CDS 112127 - 112831 1087 ## COG3527 Alpha-acetolactate decarboxylase + Term 112845 - 112884 7.0 + Prom 112871 - 112930 14.9 100 52 Op 1 . + CDS 112958 - 113131 194 ## gi|228475498|ref|ZP_04060216.1| conserved hypothetical protein 101 52 Op 2 . + CDS 113140 - 113352 111 ## gi|228475599|ref|ZP_04060317.1| hypothetical protein STAHO0001_0301 + Prom 113374 - 113433 7.6 102 53 Tu 1 . + CDS 113455 - 114171 720 ## COG1636 Uncharacterized protein conserved in bacteria + Term 114175 - 114228 3.0 - Term 114162 - 114213 9.4 103 54 Op 1 . - CDS 114225 - 114500 420 ## SH0470 hypothetical protein 104 54 Op 2 . - CDS 114574 - 115644 1265 ## COG0167 Dihydroorotate dehydrogenase + Prom 115783 - 115842 5.8 105 55 Tu 1 . + CDS 115870 - 116724 1170 ## COG3001 Fructosamine-3-kinase + Term 116727 - 116776 13.3 + Prom 116743 - 116802 6.2 106 56 Tu 1 . + CDS 116831 - 116950 173 ## SH0477 hypothetical protein + Term 116986 - 117033 3.2 - Term 116972 - 117023 1.1 107 57 Op 1 . - CDS 117042 - 117911 641 ## LSEI_0105 DMT family permease 108 57 Op 2 . - CDS 117904 - 118329 513 ## LC705_00109 ADP-ribose pyrophosphatase 109 57 Op 3 . - CDS 118298 - 119065 582 ## COG0500 SAM-dependent methyltransferases - Prom 119089 - 119148 15.7 - Term 119391 - 119434 10.1 110 58 Op 1 . - CDS 119457 - 119693 419 ## COG4224 Uncharacterized protein conserved in bacteria 111 58 Op 2 1/0.538 - CDS 119706 - 120650 1068 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 120709 - 120768 6.1 - Term 120755 - 120795 6.1 112 59 Tu 1 . - CDS 120808 - 121374 358 ## COG1309 Transcriptional regulator - Prom 121465 - 121524 8.3 + Prom 121560 - 121619 7.1 113 60 Tu 1 . + CDS 121664 - 122722 1489 ## COG3641 Predicted membrane protein, putative toxin regulator + Term 122732 - 122771 5.0 + Prom 122747 - 122806 4.5 114 61 Tu 1 . + CDS 122834 - 124258 1548 ## COG2326 Uncharacterized conserved protein + Prom 124389 - 124448 10.4 115 62 Tu 1 . + CDS 124684 - 125412 999 ## SH0486 hypothetical protein + Term 125446 - 125500 14.1 + Prom 125516 - 125575 10.0 116 63 Op 1 . + CDS 125602 - 126099 277 ## SH0487 hypothetical protein 117 63 Op 2 1/0.538 + CDS 126089 - 127597 1466 ## COG1233 Phytoene dehydrogenase and related proteins 118 63 Op 3 1/0.538 + CDS 127612 - 128733 886 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 119 63 Op 4 4/0.000 + CDS 128763 - 129629 809 ## COG1562 Phytoene/squalene synthetase 120 63 Op 5 1/0.538 + CDS 129641 - 131146 1508 ## COG1233 Phytoene dehydrogenase and related proteins + Term 131338 - 131385 10.3 + Prom 131302 - 131361 3.1 121 64 Op 1 1/0.538 + CDS 131393 - 132562 1469 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase 122 64 Op 2 . + CDS 132590 - 133588 1251 ## COG1052 Lactate dehydrogenase and related dehydrogenases + Term 133591 - 133637 8.4 - Term 133577 - 133625 7.2 123 65 Op 1 15/0.000 - CDS 133626 - 133835 396 ## COG2608 Copper chaperone - Prom 133858 - 133917 7.5 124 65 Op 2 . - CDS 133924 - 136311 3089 ## COG2217 Cation transport ATPase - Prom 136383 - 136442 7.7 125 66 Tu 1 . - CDS 136446 - 136652 310 ## SH0497 hypothetical protein - Prom 136867 - 136926 6.9 + Prom 136651 - 136710 10.2 126 67 Op 1 1/0.538 + CDS 136849 - 137718 191 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 137745 - 137789 6.2 + Prom 137734 - 137793 2.7 127 67 Op 2 . + CDS 137813 - 138406 741 ## COG0110 Acetyltransferase (isoleucine patch superfamily) + Term 138416 - 138463 9.5 + Prom 138451 - 138510 10.8 128 68 Tu 1 . + CDS 138632 - 141139 2069 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC + Term 141147 - 141186 0.1 - Term 141128 - 141182 -0.5 129 69 Tu 1 . - CDS 141183 - 142133 870 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 142171 - 142230 16.6 + Prom 142261 - 142320 7.5 130 70 Tu 1 . + CDS 142403 - 143947 1918 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 143966 - 144015 13.1 + Prom 144062 - 144121 13.1 131 71 Op 1 22/0.000 + CDS 144163 - 144390 334 ## COG1918 Fe2+ transport system protein A 132 71 Op 2 . + CDS 144395 - 146389 2161 ## COG0370 Fe2+ transport system protein B 133 71 Op 3 . + CDS 146401 - 146589 178 ## SERP2125 hypothetical protein + Term 146597 - 146637 8.1 - Term 146578 - 146632 17.2 134 72 Tu 1 . - CDS 146655 - 147206 595 ## COG1309 Transcriptional regulator - Prom 147290 - 147349 12.4 + Prom 147414 - 147473 11.1 135 73 Op 1 . + CDS 147533 - 147997 669 ## SH0504 hypothetical protein + Prom 148062 - 148121 5.1 136 73 Op 2 . + CDS 148150 - 148671 648 ## COG0350 Methylated DNA-protein cysteine methyltransferase + Term 148680 - 148721 7.2 - Term 148668 - 148709 7.2 137 74 Tu 1 . - CDS 148792 - 149958 1357 ## COG3425 3-hydroxy-3-methylglutaryl CoA synthase - Prom 150002 - 150061 6.9 138 75 Op 1 1/0.538 + CDS 150071 - 151225 1513 ## COG0183 Acetyl-CoA acetyltransferase 139 75 Op 2 . + CDS 151227 - 152504 1656 ## COG1257 Hydroxymethylglutaryl-CoA reductase + Term 152512 - 152573 17.0 - Term 152498 - 152559 17.0 140 76 Op 1 . - CDS 152578 - 153012 565 ## COG3942 Surface antigen - Prom 153044 - 153103 8.7 - Term 153153 - 153181 1.4 141 76 Op 2 . - CDS 153230 - 153427 154 ## SERP2119 hypothetical protein - Prom 153623 - 153682 10.1 + Prom 153586 - 153645 12.5 142 77 Op 1 3/0.000 + CDS 153670 - 154554 300 ## PROTEIN SUPPORTED gi|30995401|ref|NP_438934.2| transcriptional regulator + Prom 154623 - 154682 10.6 143 77 Op 2 23/0.000 + CDS 154757 - 155146 390 ## COG1380 Putative effector of murein hydrolase LrgA 144 77 Op 3 1/0.538 + CDS 155149 - 155835 679 ## COG1346 Putative effector of murein hydrolase 145 77 Op 4 . + CDS 155886 - 157625 2479 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] + Term 157637 - 157684 9.8 + Prom 157699 - 157758 11.8 146 78 Op 1 . + CDS 157831 - 157902 62 ## 147 78 Op 2 . + CDS 157895 - 159922 2551 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 159931 - 159969 6.0 - Term 159919 - 159957 1.4 148 79 Tu 1 . - CDS 160087 - 161139 1063 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 161173 - 161232 10.9 + Prom 161151 - 161210 8.8 149 80 Tu 1 . + CDS 161346 - 161672 375 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 161675 - 161736 14.3 - Term 161669 - 161716 3.1 150 81 Tu 1 . - CDS 161725 - 162687 1257 ## COG0039 Malate/lactate dehydrogenases - Prom 162723 - 162782 7.4 + Prom 162692 - 162751 14.8 151 82 Tu 1 . + CDS 162849 - 163826 1348 ## COG0657 Esterase/lipase + Term 163951 - 164011 1.3 152 83 Op 1 . - CDS 163907 - 164071 61 ## 153 83 Op 2 . - CDS 164043 - 164186 95 ## gi|228475510|ref|ZP_04060228.1| conserved hypothetical protein 154 83 Op 3 . - CDS 164252 - 164569 289 ## SH0530 hypothetical protein - Prom 164623 - 164682 6.5 + Prom 164718 - 164777 11.7 155 84 Op 1 . + CDS 164908 - 166065 1111 ## SH0531 poly-gamma-glutamate synthesis protein PgsB 156 84 Op 2 . + CDS 166067 - 166519 620 ## SLGD_00463 poly-gamma-glutamate synthase subunit PgsC/CapC 157 84 Op 3 . + CDS 166543 - 167613 1106 ## COG2843 Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) 158 84 Op 4 . + CDS 167603 - 167764 279 ## SH0534 hypothetical protein 159 84 Op 5 . + CDS 167766 - 169364 2089 ## COG0405 Gamma-glutamyltransferase + Term 169365 - 169417 10.4 + Prom 169398 - 169457 13.1 160 85 Op 1 . + CDS 169555 - 171036 1460 ## COG1070 Sugar (pentulose and hexulose) kinases + Term 171089 - 171131 1.2 + Prom 171153 - 171212 10.8 161 85 Op 2 . + CDS 171281 - 171574 177 ## + Term 171739 - 171783 8.4 + Prom 171786 - 171845 12.3 162 86 Op 1 1/0.538 + CDS 171962 - 173005 1395 ## COG1299 Phosphotransferase system, fructose-specific IIC component 163 86 Op 2 9/0.000 + CDS 173008 - 173694 932 ## COG1760 L-serine deaminase 164 86 Op 3 . + CDS 173708 - 174610 1426 ## COG1760 L-serine deaminase + Term 174627 - 174671 8.1 + Prom 174655 - 174714 6.0 165 87 Tu 1 . + CDS 174749 - 174952 151 ## SH0541 hypothetical protein 166 88 Tu 1 . - CDS 175007 - 175513 606 ## COG1247 Sortase and related acyltransferases - Prom 175579 - 175638 10.3 + Prom 175562 - 175621 8.3 167 89 Tu 1 . + CDS 175653 - 176258 702 ## COG3764 Sortase (surface protein transpeptidase) + Term 176270 - 176311 4.7 + Prom 176299 - 176358 4.4 168 90 Tu 1 . + CDS 176436 - 177245 875 ## COG0561 Predicted hydrolases of the HAD superfamily Predicted protein(s) >gi|312979657|gb|ACRM01000008.1| GENE 1 3 - 413 268 136 aa, chain + ## HITS:0 COG:no KEGG:no NR:no DLASASTSLSESASTSVSDSNSASTSLSGSTSTSVSDSTSASTSSSESTSTSVSDSNSAS TSLSGSTSTSSSEMQHSMHHAHSHSQLPKHHEDLPETGEENSNSSILVSAVATMLAGLGM IRRSRKNKKDNDRQRR >gi|312979657|gb|ACRM01000008.1| GENE 2 560 - 1855 923 431 aa, chain + ## HITS:1 COG:SA2446 KEGG:ns NR:ns ## COG: SA2446 COG0201 # Protein_GI_number: 15928239 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecY # Organism: Staphylococcus aureus N315 # 33 431 4 403 403 407 57.0 1e-113 MVNSFNLNTEIFYVFSLFDIIKQTLFKNLGGIMFKEQEYKVLYKRIIFTCFILVIYIFGS HISIVSSNSFHSGNDSFFKLAISNVGGDLTNLNIFSLGLGPWLTSLILIMLLNYRNIDKI TKQTRAEKHYKERILTLLFAGFQSYYVINTYINNNFIKDNNIILLMLTLITGAMLLVWLA DQNITYGIAGPMPIVLISLIKSLFNNQHFESIHINSLLIILTIIALIIALLLLLFIELTE YRLSYRDIMNNANKKSPTYLAWKLNPAGSISIMMSLSVFVLLNNLIHLIGAIFGKHLNLY FLSFSNPIGITSYFVIQIILNYVLSRFLINTKRKADEFLKNGNYFDTIYPGKDTERFLNR KARKVCWIGAIIVALILAFPMYLTLLAPGFSKEIYFSVQLIILVYISINIGETIRTYLYF DRYKEILNKYW >gi|312979657|gb|ACRM01000008.1| GENE 3 1865 - 3433 1270 522 aa, chain + ## HITS:1 COG:no KEGG:SH0328 NR:ns ## KEGG: SH0328 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 522 1 524 524 575 58.0 1e-162 MKQFIPAWYDSKNWWNSTTQPFYIKRKVTEFDDMISLISMHQKNNSQFNTIILNYQPMLR LFLHRHGLYEMSYWSLFDDIQGVAQMSPQAIDYRDLEWPEDTEFIYTPFQVIAITSETTY SKMNFSQEGYLFEIETYKEKSLQVKYLFDDRGFISSIEKFQNNGQPSYKEYLDINGHTIM IQSLITQKVEISRDFYSQFEKIEYSSIEEIIYEKLSQYYFKYIEHHDNVIVAADQHHNDM INKIFDLKNLCFSVFTQRNRTLEESILQSIIQAQYCIVDTLENEQLIKDFVKKHDIANHF SLMRITPFDVQTLPNMSSQLYETNIGVWIDSLNEVRLKELIDILIQYSVERENIRLHLLT RKDDTDIPEWLTYKIKNTNEQLNKNEEQLSLEVRDILETEIEEIEYIKLIFVPFEEHLLK EMSHLRVMIDLGNEPDLYLQISSISVGIPQINQLKTNYVDHKLNGLIINDTSELIMALDF YLLNLKNWNYSFAHSIKLSEEFSSSKIITQLNHLIEGENNGT >gi|312979657|gb|ACRM01000008.1| GENE 4 3423 - 4985 1358 520 aa, chain + ## HITS:1 COG:no KEGG:SH0329 NR:ns ## KEGG: SH0329 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 520 1 520 520 771 68.0 0 MGRKFRVLQIGGHDLGSLFKEKEDVEWDYLDDAVFHFESGYIDAVQEILKVYGEFNLVFV QSPYSQSLMKLLHLVSVPHNTVIDFHVWSDLYENDSLVRSKLIKPLYYENEEMLQHKLFS VTFAKQYGDRVSPIKVMVNSSFKGEYHYQGNKALVLEGDFGTEFTPLLTWTQNLVNDANI VNEIWPEYTIEGDIDLEYTLRIFPFGSTDIPEMTFHYHQKDLLNPIQLPRLSYQANISVS LKAKGKGKISVGAVHKRWSRLEMGQFIMGGQRFSDSSRDEFIYYFNPGDMKPPLNVYFSG YRPAEGFEGFYMMTKMNAPFMLISDPRLEGGAFYLGSEEYEQKIIKVIKEALRFLNFKDN DLILSGLSMGSFGALYYATVLEPAAVIIGKPLINIGTIANNMKLLRPNEFGTANDVLLTN EGGVSKQDIDNMDQRFWNKLKHSHLSDTIFAIAYMEHDDYDAMAFHNISPILSKQRAHVM SRGVPGRHNDDSPTITNWFINFYNMILEDRFGRDSHASTK >gi|312979657|gb|ACRM01000008.1| GENE 5 4969 - 5520 481 183 aa, chain + ## HITS:1 COG:no KEGG:SH0330 NR:ns ## KEGG: SH0330 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 166 1 167 180 169 50.0 5e-41 MQALNNYRIEWRYIHPSTFMYGTTLQFKKEGALFKNPLMPSGTVIHAWHMLARFDMDKAV PSLPILRKGHHYEIKLNFEVQPPRAAYVKVTFYRKNDSELSYVIIEKKDEITEFKFPQEA YAYKIELINSGLNFLLFHNIIISEAENKHLKNDTTTDKIEIINKIIHQTNTTNGGISYGK SIE >gi|312979657|gb|ACRM01000008.1| GENE 6 5501 - 7891 2646 796 aa, chain + ## HITS:1 COG:SA2442 KEGG:ns NR:ns ## COG: SA2442 COG0653 # Protein_GI_number: 15928235 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Staphylococcus aureus N315 # 1 796 1 796 796 1011 64.0 0 MANRLNDMINHIRLKRIDKLLSEVNRYSQLFATYSDEALQAKTIEFKQRLKDQKLSLNQL LPEAYATIREASKRVLHMYPKDVQIMGAIVMHQGNIAEMQTGEGKTLTATMPLYLNALSG KTAYLITTNDYLANRDLQEMKPLYEWLGLTASLGFVDIPDYEYDEGEKKKLYNHDIVYTT NGRLGFDYLFDNLADHINAKYLPELNFAIIDEIDSIILDAAQTPLVISGAPRVQSNLFHI VKLFIETLEEDEHFKVNLNKKEVWLTKEGIEKANHYFKIDNMYKIKYFDLVRVINLSLRA KYLFQDNLDYFIYNGEVVLIDRITGRMLPGTKLQSGLHQALEVKENVELSQDFSVMATIT FQNLFKLFNKFSGMTGTGKLGEKEFFELYSKIVIQIPTHHPIIREDKEDRVYMKSEDKNK AILEKIIHIHQTKQPVLLITRTAEAAEFFSAQLFEQNIPNNLLIAQNVAKEAQMIAEAGQ QEAVTVSTSMAGRGTDIKLGNGVHELGGLAVIINEHMENSRVDRQLRGRAGRQGDPGLSQ IYVSLDDYIVKRWSNTKWANNDKIQKIDYQKLQYSPFFRNKVRNIVKKAQRVSEETAMVN REMANEFEKSIGIQREHIYKERDRILATDDFKEFDFEQLARDVFEYDIKTKYIVTENDVV HYIYNHLSFNFKDETMTQHLESRESIINFLLQQFNKQLEKNLNTVNDAYLKLRFLQKAIL KAIDVEWINQVDQLQQLKASVNNRQNGQRNAIFEYHRVALETYEHMTMNIKREMIRNLCL SILTFDKKQDLVIHFP >gi|312979657|gb|ACRM01000008.1| GENE 7 7909 - 9414 1579 501 aa, chain + ## HITS:1 COG:SA2441 KEGG:ns NR:ns ## COG: SA2441 COG0438 # Protein_GI_number: 15928234 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 1 501 1 501 502 681 64.0 0 MTIYNINFGIGWASSGVEYAQAYRAKLLRQINQSAKFIFLDFISSENIQTLTHNIGFKDD EVIWLYQYFSDIKIAPTTYTIDQLIQDLGNPVTARIQTGKVLRLYIGNDQSYVSCYLKEE DKEVVDRAEFVVNGMLIRKDYYSYVRTFSEYYAPKDNRAKVYMRQFYNEDGSVVYREYID GNSSIYVFDDARLYSKQHFVAYFMQQLHLTSDDIVIIDRSTKVGQAILENKGPSKVGIVV HAEHYSENSTDDTHILWNNFYEYVFSKAPFIDFYITATDLQNKILSEQFKKYTSYQPRIR TIPVGSLQQLKYPKEHRQPYSMLTASRLASEKHVDWIVKAAIKAKKEVPKLRFDIYGHGG EKSNIENIIKENHAEDYIQLKGHVNLEDIYANYELFVSASTSEGFGLTLMEAVGSGLGMI GFAVNYGNPTFIEEGKNGYLIPIEKDNQNIENITDRMAKKIIQYFNKGLTRPHDMSYKIA KPYETTNITQKWQNLINEVLQ >gi|312979657|gb|ACRM01000008.1| GENE 8 9411 - 10751 1120 446 aa, chain + ## HITS:1 COG:SP1767 KEGG:ns NR:ns ## COG: SP1767 COG1442 # Protein_GI_number: 15901598 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases # Organism: Streptococcus pneumoniae TIGR4 # 287 383 278 374 814 78 42.0 3e-14 MINLFETFNDASQKLQQSLYLADYRHPTIVMDDNGFLPDDVISPYKFFANYKQFKDDTPT FFNEVNIPPLWEIAGNQNIAEVIDNGKVRGRIFYREHFKNRIVNFVEWFDEKDRLRSVDH YTKEGVKFAQTVYDLEKNPILKTYVNREGKEIIYENFVTRDIVLDWKGQSYFFASKHDFI IFFLNQLDIDISKIIINSLATPFFVLYYSDFVKQAVLFWQENSESRVPGNMKLLLDKEQC QSSVIIPDKQEYERIISHIEANYIDSIQSAGYLYNYQRNNKYTKRILNLTNSDDIPYIEE LIKLHPEFEFHIGAITEMSSKLLNLEQYSNVVLYPTVTPKTVDRLFKKCDIYLDVNHGGE ILNALERAMLNNQLILGYKETIHRPSFVADDNIISMQHYHDLSNILNIIVKNKEQFKERL KQQKLHNNQIDKRQFKKTLKQILGSI >gi|312979657|gb|ACRM01000008.1| GENE 9 10777 - 11253 471 158 aa, chain + ## HITS:1 COG:SA2453 KEGG:ns NR:ns ## COG: SA2453 COG0225 # Protein_GI_number: 15928246 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 1 157 1 157 158 214 63.0 4e-56 METVYLAGGCLWGVQAFIKTLPGVIATEAGRANGTTQRLDDEYDGYVECVKTVFNPDITS IHDLMHYLFEIIDPYSLNKQGVDKGPKYRTGVYSENENHLKEAQQFIQQRSDRDKIVVEV RPLESYIKSADEHQDRLDKHPEDISLCHISKSILNKYN >gi|312979657|gb|ACRM01000008.1| GENE 10 11304 - 11657 583 117 aa, chain - ## HITS:1 COG:no KEGG:SSP0615 NR:ns ## KEGG: SSP0615 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 117 1 117 119 113 56.0 2e-24 MILRYATNLKLAKDLYAASKRKLTGNPYTKQLFTQDFKLSERAMKLAGVIEFIASGLFAT SVLHKNISRLGSLVTFSVLSVAVYKRLEAGHGKVGAQHALDLLGLAALSLIDTFSKK >gi|312979657|gb|ACRM01000008.1| GENE 11 11795 - 12148 665 117 aa, chain - ## HITS:1 COG:no KEGG:SH0346 NR:ns ## KEGG: SH0346 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 114 1 114 119 156 88.0 3e-37 MILRYAANLKLAKELYDSSKPKLQGSQEMIDTFKNVFGLPEKSVKLAGTVEATAAALFAA SFLNKNISRLGSIATFGVLGVAAYKHFEAGHGKEGAQHALDLLGLAALSFADTFGKN >gi|312979657|gb|ACRM01000008.1| GENE 12 12361 - 13539 1238 392 aa, chain + ## HITS:1 COG:CAC3506 KEGG:ns NR:ns ## COG: CAC3506 COG0477 # Protein_GI_number: 15896743 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Clostridium acetobutylicum # 5 384 12 388 392 150 28.0 3e-36 METSMNYNRMTTIFFISGIIVMASLYTALPLTSVFAKDFGISNAVASLNGVIFSITYSLS CLFYGTISEKFGRIRTILFGLIGLVIICLLIGFIHSFTLLIILRAIQGICAAAFSPVSIT YVTEMYSPVKRVTAISFISTSFMLSGVIGQNLSEIVVRYSNWHMVYFILTLLYILIAILI YKFVPESPVKNPQLKLVGFFKNFKDFKDNKVVILCYLISLSLLTMFISMYTIFNHYITSD IVGGSEATAINAKLFGIIGMLLSLLAGRMSERIGVKQVIVGALIVSIVSLILMGFTTNVI LLVIWSVIFVGGIAFAIPSTISKVGMIVNRNQGFFLSVNTFILFLGTAIAPLLMILIQPL SNFTLQFIIIAAIGIIALIVALLLPRRKNVIR >gi|312979657|gb|ACRM01000008.1| GENE 13 13852 - 14412 454 186 aa, chain - ## HITS:1 COG:no KEGG:SH0350 NR:ns ## KEGG: SH0350 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 185 1 186 189 250 69.0 2e-65 MPTANQKRMIKHINATVFKLLNDYHFDEITIQKICDNAEINRSTFYRYFQDKYDLLFSLP DYIATQFHHEDTRPFLSTEESFQQFIYFIGEHKKVFKHLLTSSRQADVFRNLTHVSRELM LDSVKSQNDPLALKIKHSHHPEIIADFYSSGMIEVLRRWVENDYNYSVDEIFATLHDILD ISLNCK >gi|312979657|gb|ACRM01000008.1| GENE 14 14596 - 15537 1217 313 aa, chain - ## HITS:1 COG:SPy0184_2 KEGG:ns NR:ns ## COG: SPy0184_2 COG2113 # Protein_GI_number: 15674389 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, periplasmic components # Organism: Streptococcus pyogenes M1 GAS # 43 308 16 269 269 117 31.0 4e-26 MLKSRVSKFLVLLATLTLAIVLSACGNSQSNSSTQSKTELGDKTIEIPYIASDNSTARSL VIAEVLKKAGYDVTTTPVPASGPLYATVSASDDAFHASGIFPETDKRYYDKFKDTLTLYD DKHLIDHVNVGLAVPKYVQNIDSIKDLKDDKDFGKSVDWTIQGTDNRNGVMQQTNDELDR DDLSKYSLDKSSDQEQFKKIQKAYQQQQPILFTSMEPNWFSKELDVKMLKDPDKIYGNNK QHIDLVFNHNFKEKHPAAYDIATRMAKDWDQKDEERLAKNIFVKSKNPEQVAKDYVDNHD HNVDDWLKDIDTK >gi|312979657|gb|ACRM01000008.1| GENE 15 15537 - 18080 3161 847 aa, chain - ## HITS:1 COG:SA2339 KEGG:ns NR:ns ## COG: SA2339 COG2409 # Protein_GI_number: 15928131 # Func_class: R General function prediction only # Function: Predicted drug exporters of the RND superfamily # Organism: Staphylococcus aureus N315 # 1 822 1 796 829 944 58.0 0 MANLLYKLGTFIAKHKWLSIIIWLVVLGVVIAPLLVTSPKFDSDIKMNGLKSIDTNDKIS KEFHQDSEKASMKIVFHSNKEDGLKDKTTKKDIEDALDNIKQDDDYIQNISNPYESGQVN SEGDTAIANISYVVPQTSMQDSSKKIVNKALQDIKDNHNIQIEKTTGMSMGSEPGSVSEI VGIVVAFIILLITFGSLIAAGMPIISAILGLATSVGMISLLTFMFDIPNFTLTLAVMIGL AVGIDYSLFILFRYKEIKKSGTATVEAIGKAVGTAGSAVIFAGITVMMAVCGLSLVGIDF LAIMGFASAISVLFAVLAALTLLPALISIFHKSIKIKNKPTKNKDPKHHPWAKFVVGKPV LATIISLVILILAIIPITGMRLGIPDDSLKPNDSSEHKAYQLISDNFGEGYNGQIVMLVN TKDGGSKTSIENDLSNMRRDIEDLDNVDTVSKAQLNGNNHYAIFTIIPNEGPNAKSTTDL VYELRDYHKDAEDKYHYDTEISGQSVINIDMSEKLNDAIPVFASVIVILAFILLMIVFRS ILVPLKAVLGFVLSLMATLGFTTLVMQDGVMSGLFGVDNTGPLLAFLPVITIGLLFGLAI DYELFLMTRVHEEYSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFIFQDDTAIKSM GLSLAFGVLFDAFIVRMTLIPALTKLFGNASWYLPKWLGIILPKIDVEGKALEEHHESST SNYKHSEAPRYREFVDTQDVSYQHQNRSYATHSNNYNAYDDVDYEALYTEEGTPETVHSK RQEQHDTTTYFDKTTHLYKDLTDNNTEQDVLFKALMLYAREHNQHVYDKYQTSHTDNRKD DQGGERY >gi|312979657|gb|ACRM01000008.1| GENE 16 18322 - 18489 260 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLILSIILLVVGIILISISSFVVYRQDIDLREKIYLPGVLFVLIGAICLIGYFVA >gi|312979657|gb|ACRM01000008.1| GENE 17 18743 - 19627 855 294 aa, chain - ## HITS:1 COG:sll1594 KEGG:ns NR:ns ## COG: sll1594 COG0583 # Protein_GI_number: 16330516 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Synechocystis # 5 245 7 246 316 113 30.0 5e-25 MNTKQMMIFKNFVELQNENAVAEKLGITQPTVTFHLKNLNNELGIPLYFKKGKCFNLTDA GDLLYRNSNKMLNLIDETTHMIEEFKQSKRGTLRVGASHAPIYSILPTTLKKYMHDYPNI DMNLIVDTAPMILKKIKDREIDIGVISEKGFNEKELKVKRLQENPLVIAMDKRHPLASKT DISLEDLNAYRFIIHSSGSTRESIDDWRKNNFIDLNVHMESNSISSILTIIKDSNYLSLV SQSTLFHHPNIIGKSLKEGPPSSYISIVYRADHHLTTLIQNFMTLIYSLKNESI >gi|312979657|gb|ACRM01000008.1| GENE 18 19884 - 20495 679 203 aa, chain + ## HITS:1 COG:alr4370 KEGG:ns NR:ns ## COG: alr4370 COG0639 # Protein_GI_number: 17231862 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Nostoc sp. PCC 7120 # 2 190 5 220 251 74 28.0 1e-13 MSERLLVISDIHGHRKALSILLKRAKYNPKKDQLVLMGDYVNNGPDSFGTLKLVKRLKRR GALALAGNHEMRWLNSKDKKIKRWHPFLRELSAVEVIGNYIFAHAGIDTNKPLNKQIKEY TTGHYSHSLNRQIPKNKYLVHGHVPNNRYGLKKDEIYKNKNELSIDTGAGHNKFLSLIDL TGQYQYSVEVTNIRKMNIKRLKI >gi|312979657|gb|ACRM01000008.1| GENE 19 20614 - 22863 2665 749 aa, chain + ## HITS:1 COG:no KEGG:SH0356 NR:ns ## KEGG: SH0356 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 33 747 1 668 670 412 46.0 1e-113 MNKNTQNKNRKMSKLSSYLKVSCSALILSSSLVGYGFTKDAFAATQDAETATSETTTHVQ KDLQDAMNKAKKDIKQLKHLSAVELKSYKEDIESAKNQNEIKDIIKEAKKENKVTAQENT TDVSNKDNSTESSSTQDASTEEEEKATTSNDTSADNTSNISNELDNIVSDLDTLSNKVDS GQQKDATTSNESSSSESNTSENTTDEVTKEEPTTEESPKEVPTTEKPSNQTTSSKSETSI VDKLDSIKNDIDSAKKDIESSKENDSNQLPSDENSTEEETTESSSIQDAPTTENTTHSNS NHHILDGLAKLNDTHKDQDLDTDARHHQFDKVNHQLSETEKINQAIAKIENSKDDASHLY INRKLDQLSDLRDNIQHQADLAKKDKQAIDNDIETVRKNIENNRDIILNRLQQVSDKQRA AEDVLNSVFSKNEAQHILKNIKTKGQSDKQIADQIMKQIDGLTSTTSDDILKSMLEQATN KEDLLKTILSTRLGQNEAATIAKRLANDHLTNSQIVDRLKQAFNQHGLVSSDDILNDILD KTSNRKQAIETMLATKLNQAKANALADIISRVQSDKANALDLVKSTINGKANDLLQLQNS LGQAKNRLNYILDPIVNRPSLLDRITGNTSGSNLGSNLLGNGLDLLGGLTGSHLLGNLPS GSSLLDGLTNGNSLLDGISDIPNPTQGLSLGHLGDDGLLSGLFNSDGNLSLPATGEAIKK NWIPIAAVIAITGGALVWFSRRKHHQSNN >gi|312979657|gb|ACRM01000008.1| GENE 20 23135 - 24712 1905 525 aa, chain + ## HITS:1 COG:SA1014 KEGG:ns NR:ns ## COG: SA1014 COG1288 # Protein_GI_number: 15926754 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 7 525 1 518 518 775 76.0 0 MEHGEGVSHTVSDNKEKKRFRLKMPGAFTILFILTIIAVLATWIVPAGAYSKLSYHAGAH EFKIVDAHHKTTTVPGTQDQLDKLGVKIDVNQFKSGAINKPISIPGTYERLKQKPAGPDQ ITTSMVNGTIEAVDVMVFILVLGGLIGVVQTSGAFESGLLALTKKTKGHEFLLVFMVSIL MILGGTLCGIEEEAVAFYPVLVPIFIAMGYDSIICVGSIFLASSIGSTFSTVNPFSVVIA SNAAGTTFVDGLYWRIAGLIVATIFTIGYLYWYAKRIKKNPKRSYTYDDKVKFERQWSVI KNNSEDSIFTLREKIILILFILPFPIMVWGVMTQGWWFPIMASMFLAFTIVIMLIVALGK NGLGEKKVVDAFVNGASSLVGVSLIIGLARGINRIMNDGLISDTVLNFSSSLVKHANGPL FILVLLIIFFFLGFIIPSSSGLAVLAMPIFAPLADTVGIPRFVIVTAYQFGQYAMLFLAP TGLIMATLQMLDMKYSHWFKFVWPIVVFVFIFGGGLLVAQVLVYS >gi|312979657|gb|ACRM01000008.1| GENE 21 24767 - 26968 2535 733 aa, chain - ## HITS:1 COG:SA2437_1 KEGG:ns NR:ns ## COG: SA2437_1 COG1705 # Protein_GI_number: 15928230 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Muramidase (flagellum-specific) # Organism: Staphylococcus aureus N315 # 235 613 143 499 502 223 50.0 8e-58 MSKQKFMIYLLTTTLVLPTFTSSVAQAEETTKQTKTSESNNEDSTSTSETTRTESNETPS SEDSTSDSSDNNKKQDSQSKESQSDTVSNEDAASHSKPSSTHSKNNRSSHTKDEDTYHTP LSVFNMNGSNHSFSSNFLDPSHFENGFSLTSLISSLFHFDDDISKYEHVESDSSSSNTND DKNATNTTSSDEDRTESSHQHTTIDPSPQDSSDKSNSPTTPSNQSEVLTENNQSDQSSES SFKYSNSNDNHSTDDSSVSKALDSLNQLASDLNDSNTNESSTSENSNQSTSQQTTKNTTS QTSQEEQATPNKDRQQSEDVLDALLDKYSDKATQTHKDYTSSKKDSTSQASQNEDSKKDT STTQDQLDTNKDNPQLPTEIQLKHKQEAPQSFENDFKQSNTRAISLFQDVPQLDGNNVTN GDIAVVENKATREFITSIAKDAHKIGQDNDIYASVMIAQAILESSSGNSALAQAPNYNLF GMKGSYKGASVNFNTLEASSNNNIFSINASFRKYPNLKASLKDYADLIKHGIDGNPTIYK SSWKNIAPSYRSATRHLSQTYATDPNYATKLNSLIEHYSLTDFDKKHMPDLDKYSTSTGS SGTDVSGSAFKPFSILDVASPYPYGQCTWYVYERVQQFDKHVGGHWGDAHNWDNSAEDAG YNVSTTPKNHTAVVFEAGQSGASALYGHVAFVEKVNDDGSIIISESNVKGLGIVSYRQID ADTASSLHYIQPK >gi|312979657|gb|ACRM01000008.1| GENE 22 27233 - 30061 3790 942 aa, chain + ## HITS:1 COG:SA2436 KEGG:ns NR:ns ## COG: SA2436 COG1511 # Protein_GI_number: 15928229 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 942 1 993 993 1154 61.0 0 MKNAFKLFLTDLKRVAKTPAAWVILGGLAILPSFYAWFNLWAMWDPYSNTGHIKVAVVNE DQGDKIRGKKINVGNTLEDTLKNNDKFDWQFVSREKADHEIRMGKYYAGIYIPKKFTHQI TGTLRKHPEKADITYKVNQKINAVAPKMTDTGSTIIVDEANKQFNTTVTKALLKEANKVG LQIEDEVPTIDKIKNAVYAAHQSLPKLNKIADRIVYLNDHQDQLDQYANQFRDLDNYKDD ILNAQQKLNDVNAAIPSLNQKAKLILALNEYMPNIQKLVNVAADDIPQTFPKINRGVEIA SQGLDLANQQLNDAQDYLGMAKQRVGDYQEATRRAQAVNGNVNNNLRQQSATTNDNGMPQ YTIQKLSNSSNNDQLPNGQILSNEDVKSMNSGLAEALLALSSNADKQAKASQSDVKALRD ITYGVIASNRPTEYNDMLRNIKGRLENTSKYNQQLIDVLKELQQREHVNLAPQIKRIEST NNRINDTLRSTNQLIDALSSGGKGSAESINVLRSLPALNSGLGSYRDYIKDNLNHRLLVV SNDITKQLSEGQVVLSDVQSKLNTINQVIQAGQHIVGDGQTRIATLQSELPSLEAGYIEA TQTAKNYFPTVRKNVAKAADFVRNDLPDLEQRLANATATVNANLPTLFDKYDNAVDLLDE NQPKAKEALANLANFAQTKLPGIERDLNKANDIFNQLDDDDAVDKLVNSLKNDLKKQADV IANPINKKTVDVFPVRDYGSGMTPFYTALSIWVGALLLVSLLTVHNKHEELADQLTKRQE YLGKGMFFILMGVLQTLIVTTGDLFLLHAQVESPLLFVLVALFGAIVFNTIVYTCVSILG NPGKAVAIILLVLQIAGGGGTFPVVTLPKFFQNISPYLPFTYLIDCLREVVGGIVPEILI TKLIIFGLFGLGFFLIGFIAKPFLDPIMTKIAKRVEESKVTE >gi|312979657|gb|ACRM01000008.1| GENE 23 30117 - 30623 689 168 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475744|ref|ZP_04060462.1| ## NR: gi|228475744|ref|ZP_04060462.1| hypothetical protein STAHO0001_0368 [Staphylococcus hominis SK119] # 1 168 1 168 168 144 100.0 2e-33 MKKILATIVIILLVVALGCSVFFAATHSNQSDPNQTQSTKKKDKKETTSESHTVQSNETS QSDNGTTAQSESTSQSIQEQQQTTQRPSTVQTTQPKTSESSTTSQSQHRSESNTSKQPTS QSTEDKPSSEQTSTEQPSTEEKPSSQQSTKSSTESHTNRSSESNNKSN >gi|312979657|gb|ACRM01000008.1| GENE 24 30826 - 31347 612 173 aa, chain + ## HITS:1 COG:no KEGG:SH0362 NR:ns ## KEGG: SH0362 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 173 1 176 176 189 65.0 4e-47 MNKIVKSIASVTLAFGTMLGVSTTVLPIEDTAHAATKPYYVYNGYVDKDAKFVTNKQFIK AVKYGNVTMNGIKFEKVHSNKKLEKYNQTFTGVSKDGKKANKVQFSVKGDLTYDQLKKAY GSDFKKVKGTPSDKKSGIFEYQPKKDGLIVSFVITHGRTVEVDIGYEGVTTSK >gi|312979657|gb|ACRM01000008.1| GENE 25 31393 - 31791 551 132 aa, chain - ## HITS:1 COG:no KEGG:SH0364 NR:ns ## KEGG: SH0364 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 3 132 8 137 137 194 73.0 6e-49 MIPDQYKHETDYRNIPREYLDTNIPQGRGMIKWAPFAVMPEQYERINAFIENQNKITMPS LSDDQFNILNRRLIEKYTTHQLAMISYFRNGTIHSIAAYIKRIDTLKRYITISNENGSQT MQLKFAVLCYIE >gi|312979657|gb|ACRM01000008.1| GENE 26 32123 - 32647 610 174 aa, chain + ## HITS:1 COG:no KEGG:SH0365 NR:ns ## KEGG: SH0365 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 36 173 24 161 165 183 74.0 2e-45 MKKITKVCVATTIAFSTLLGASVTGALVQQPTAHAATSSYYNYDGYAGQNASFVLDKHFK NAIKAENVKFNGIKIKSTTSNKSVLKYDQYFRNVSKDGKTASLLDMEVKGQLSLTQLKKV YSKELQKIDNDNNNTTGIYYYQPKQNGMTVWFDVNKGKVDRVVLGYSTVQQAMN >gi|312979657|gb|ACRM01000008.1| GENE 27 32901 - 34136 1048 411 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149002994|ref|ZP_01827905.1| 50S ribosomal protein L33 [Streptococcus pneumoniae SP14-BS69] # 1 411 1 409 409 408 51 1e-112 MTKGPIQVNNEIGTLKTVLLKRPGKELENLVPDHLSGLLFDDIPYLKVAQEEHDQFAETL RSEGVEVVYLEQLAAEAIENEDVRQQLIDDILSESQKTILGHEKEIKTYLSTLSNQALIE TMMSGIRKEDIQLETTHLVEYLDDRYPFYLDPMPNLYFTRDPQASIGRGMSINRMYWRAR RRESIFMTYILKYHPRFKDADIPVWLDRTSPFNIEGGDELVLSKDVLAIGISERTSAEAI ERLARNIFKDDYTTFKKVLAIEIPNSRTFMHLDTVFTMIDYNKFTVHAAIFKEENHMNIF IIEQDEMKEDIKITHSRQLRETLANALGVDNVEFIPTGNGDVIDGAREQWNDGSNTLCIR PGVVVTYDRNYVSNQLLRDKGIKVIEIKGSELVRGRGGPRCMSQPLFREDI >gi|312979657|gb|ACRM01000008.1| GENE 28 34273 - 35034 992 253 aa, chain + ## HITS:1 COG:SA2422 KEGG:ns NR:ns ## COG: SA2422 COG0627 # Protein_GI_number: 15928215 # Func_class: R General function prediction only # Function: Predicted esterase # Organism: Staphylococcus aureus N315 # 1 251 1 251 253 345 64.0 6e-95 MAFMTINYKSPTIGMNQSFTAIVPEDDSFFKQHEPVKPLKMLLLLHGLSSDATSYMRLTS IERYAEAHQLAVIMPNADHSGYANMAFGHSYYDYILEIYNYAHQVLPVSKKREDNFIAGH SMGGYGTIKFALTQSHLFSKAAPLSAVCDVQSLLDIEWNDFDPKAIAGEALKVKGTELDT YHLVDEAVDKDATLPELFIQCGTEDFLYEDNQRFMTYLDEKGINYKYEEGPGEHDYAFWD KAIARTIEWLVEK >gi|312979657|gb|ACRM01000008.1| GENE 29 35077 - 35205 130 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MFIGYLTLFVVGIAGFIYTILAILAMNKGEDFVVPFTIEIIK >gi|312979657|gb|ACRM01000008.1| GENE 30 35454 - 36596 1000 380 aa, chain + ## HITS:1 COG:SPy0818 KEGG:ns NR:ns ## COG: SPy0818 COG2843 # Protein_GI_number: 15674859 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Streptococcus pyogenes M1 GAS # 6 279 48 332 430 148 32.0 1e-35 MYRYYITSVVIFLVFSLICGMALVEDNSTKVSVVAVGDNLIHPVVYHDAQHSDGTFNFKP MYSNIKKDIAKPDLAFVNQESPLGGDDIPFSGFKRFNTPSQVAGDIVVTGFDVINGANNH SLDQGDQGITNHIQTWEKFDNNVLFTGIYNSKKEANRVHTISKNGVKISVLSYTYGTNDM VSNYPYTVKMFDEATIKHDIRKAKQQSDVVMVSAHWGNENHHTPNKTQKKYAQLFANEGV DVVIGTHPHVIQPVKWVKAKNHHHKTLVAYSLGNFLNGQYSGDENNQLLGRINFDVVKEP KGVHLENVKWTSMVNHYEQARPTNKQTRQHFSIYNLDDYTPQLAHKHGLQSDSDSEWNIK HLQDITKDVIDRTFLNEKSL >gi|312979657|gb|ACRM01000008.1| GENE 31 36675 - 38315 2097 546 aa, chain - ## HITS:1 COG:SA0182 KEGG:ns NR:ns ## COG: SA0182 COG3961 # Protein_GI_number: 15925892 # Func_class: G Carbohydrate transport and metabolism; H Coenzyme transport and metabolism; R General function prediction only # Function: Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes # Organism: Staphylococcus aureus N315 # 1 546 1 546 546 798 70.0 0 MKQRVGQYLMDAVHEAGVNKIFGIPGDFNLAFLDDIVSHEGVEWVGTTNELNGAYTADGY ARMNGLGVLVTTFGVGELSAVNGIAGSYAERVPVIAITGAPTRAVEKAGKYVHHSLGEGR FDSYRHMFEPITTAQAYITPENATTEIPRVINAALQERRPVHIHLPIDVAMSDIEVEQPF KVENAPQQDVTQYVDMVADKLRSAQQPLIIAGHEINSFHLHDELEQFVNKTNIPVVQLSL GKGAFNEENPHYMGMYDGEIAKDDIKDYVDHSDAILNIGAKLTDSATAGFSYQFDINEVV MINHRLFKLNDTIDTEIALPEFLEALNTIDYTNKSSFPFYQQPESNDYELTDDTLTQDTY FKMMQDFIGGNDVLIAEQGSSFFGAYSLALPKNMSFIGQPLWGSIGYTLPATLGSQIANP HRRHILLIGDGSFQLTVQELSTMIRQDIKPVMFLINNDGYTVERLIHGMEEPYNDINMWD YKALPNVFGGDSVKVHDVKTSKDLKTVFDEINEDQEHMHFTEVTMKWDDAPQTLRDISKA FANQNK >gi|312979657|gb|ACRM01000008.1| GENE 32 38463 - 38918 538 151 aa, chain + ## HITS:1 COG:SA2421 KEGG:ns NR:ns ## COG: SA2421 COG1846 # Protein_GI_number: 15928214 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 151 7 157 157 207 74.0 4e-54 MDRNKNDYEHMLFYFAYKTFVTTADEIIEKYGMSRQHHRFLFFINKLPGITIKQLLNTLE ISKQGSHATLKKLKEEALIIEQQSEEDRRVKQLFPTPKGSKLVEKLNKAQDKLMQQTFQK VGKDWYAIMEELSNYREGFQDIKHLKDEKES >gi|312979657|gb|ACRM01000008.1| GENE 33 38992 - 39129 96 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MINNNEKLIQLISKELNIFTFNVQRTIGYLTVIKPNNMVDYNIKC >gi|312979657|gb|ACRM01000008.1| GENE 34 39386 - 40003 375 205 aa, chain + ## HITS:1 COG:SA0648 KEGG:ns NR:ns ## COG: SA0648 COG4330 # Protein_GI_number: 15926370 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 205 2 206 206 174 59.0 7e-44 MAPRYIARIYFIVLFIISLFVPRILNFMTLNLFLAYIPLELCLLLKLFKPKETKEWPLFI VFALIFILLVPNTFYMITDLIHLNNFKFDFLVNLNLIEWFAFAYLLAGVFFAIYCMIFIF ISLEHFTSNIWLNRCLVLSLMFLNGIGIYVGRFLRFHTVYLITRPLTITHQVFDAIDLKS VIFIMLMVLLQAILILFVKGVRLIK >gi|312979657|gb|ACRM01000008.1| GENE 35 40000 - 40278 162 92 aa, chain + ## HITS:1 COG:no KEGG:SH2202 NR:ns ## KEGG: SH2202 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 20 91 21 92 92 65 54.0 5e-10 MIRILLLLVIVIILQVIIKHFLSDIELDSKYKNMITYVPLGLGLFFVQNVYYERQYPHWE VPLKEKLNLKYIYLFTFLEFVAIYICLFVMKN >gi|312979657|gb|ACRM01000008.1| GENE 36 40440 - 40541 231 33 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKLLVTTIIGFVGYIAFKKYQNKVNEMPNIEY >gi|312979657|gb|ACRM01000008.1| GENE 37 40907 - 41569 517 220 aa, chain + ## HITS:1 COG:SA2457 KEGG:ns NR:ns ## COG: SA2457 COG3944 # Protein_GI_number: 15928250 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Staphylococcus aureus N315 # 1 219 1 220 220 199 53.0 3e-51 MENTIEFSRIIQLIKKNLWLIVLLPIIFLLVSAILSFFLIQPKYQASTQVLVNQKKEEKN VAVQEVQGNIQLVNTYSEILKSPRILDKVSKDDNKYSSEELNEMVNVKTQANSQILNINV TSHDKKESEKIANKIANVFKNDMPEIMNVDNVSILSKANGTSEKISPKISMNLIIGLIAG LALAILIVALKEILDKRIKSEEDVERELEVPVLGSIPKLK >gi|312979657|gb|ACRM01000008.1| GENE 38 41582 - 42289 631 235 aa, chain + ## HITS:1 COG:SA0145 KEGG:ns NR:ns ## COG: SA0145 COG0489 # Protein_GI_number: 15925854 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Staphylococcus aureus N315 # 8 232 3 228 228 264 59.0 1e-70 MAKRKEEKRKALNTPLYVEDKPKSIVSEKLRGIRSNIMFSNAEEIKSVLITSEKPAAGKS IVSANIAITYAQAGYKTLIIDGDMRKPTQHYHFQESNYDGLSNLIIGNSDYDKSIRSTRV KNLDLLTSGPIPPNPSELIASERFKKIFEHLQKEYDFILIDTPPIISVTDAQVFLQYVPN CVLIIDAQKNNRNEVKKAKQLVEQADGHVIGAILNKTAQEKSSNYYYYYGEDSKS >gi|312979657|gb|ACRM01000008.1| GENE 39 42286 - 43053 826 255 aa, chain + ## HITS:1 COG:SA0146 KEGG:ns NR:ns ## COG: SA0146 COG4464 # Protein_GI_number: 15925855 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Capsular polysaccharide biosynthesis protein # Organism: Staphylococcus aureus N315 # 1 254 1 254 254 282 55.0 6e-76 MIDIHNHILIGLDDGSQSKEETLALLKQAKDEGVTDIIATPHHLSPQFDNYYEDIVPKMD EVLSIDEFKDIGINIYPGQEVRISDQILPQLENNQIIGLNHSKYVLIELPSGHVPHYTGR LFFELQSKGYVPIIAHPERNKEISANLDVLYELINAGALSQLTTASLMGHHGKKTQKKCI DMIENNLTHFVASDAHHVEKRPFIMNRLFEERKLKKYHEDIHNLMNNAKFIIDNEDLPKK QPTQEYTQKKFFNLF >gi|312979657|gb|ACRM01000008.1| GENE 40 43087 - 44895 1456 602 aa, chain + ## HITS:1 COG:SA0147 KEGG:ns NR:ns ## COG: SA0147 COG1086 # Protein_GI_number: 15925856 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate sugar epimerases # Organism: Staphylococcus aureus N315 # 1 600 1 600 607 843 71.0 0 MDKLSARGRLLTLIIIDSIIVTLSVFICYSILEPYFEGYSKKILIFTSIILLISHHVFAY IFNLYHRAWEYASVNELLIIVEAVTCSIVTTIIIVPLFTGRPPFFRLYLITWMMHLILIG GSRISWRIARGFLVGKQKKKKPTLIVGAGRGGSLLIRQMLRSPDMGLEPVLAVDDDLQKR NLTITSGVKVQGTIKDIPNLVEKYRIKRIIIAIPTLSPARLKEITDLCNSTGVDIFKMPS IESVLSGELEVNQLKRVEVEDLLGREPVELDMAMISKELTHKTILVTGAGGSIGSEICRQ VCKFEPERMILLGHGENSIYLIHQELTKLYKDKIEIIPVIADVQDGERIQDIVDKYHPYA IYHAAAHKHVPLMEYNPTEAFKNNVLGTRNVATAAKKAGVRKFVMVSTDKAVNPPNVMGA SKRMAEMVVQSLNDENSKTDFVAVRFGNVLGSRGSVIPLFKKQIAAGGPVTVTHPDMTRY FMTIPEASRLVLQAGALAQGGEVFVLDMGEPVKIVDLARNLIRLSGKTEDEIKIEFSGIR PGEKLYEELLNEDEIHPEQVYEKIYRGRVKHHSKEQVDEIVEDLNHHFSQQKIINIANGK GC >gi|312979657|gb|ACRM01000008.1| GENE 41 44972 - 46222 647 416 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|729020|sp|P39854|CAPE_STAAU ## NR: gi|729020|sp|P39854|CAPE_STAAU RecName: Full=Protein CapE # 6 416 29 436 440 387 59.0 1e-105 MYFHYNLISFKILVISLTLTIASSIFILYKNKIGFLMIYLFYLYLTNYGIYLTNCFIENP FLEYYGDLTWYYKNFKPLLEIVSFGLLLFSLLSIIITIFNIKSQKENYKKISINNSGDAT YFYTGIFFIILFTFQFLYYILTGKLSINTYGNYVDSIQKLPMYTYGIFIFSLGIAFAFSN VKRTNLKYLIILITPQCVLFLATGNRGEVFYPILTALGVLIIRGVKLKWGAVILFIFTFF FLIPLIKINRQVQNFSFSEININWFSSLVEIGYTLRPFGYVYDWISNGETLSLGYSYLAP IQNIFSKFIPGLLPVDYKTEGFGFRYRLEGMGFNVMAEAYYNGAIIGLIIIIIILVFVLA KFSHFGKFTTLSIGAAVTSVLINNIRNAFSFVPGYILIILLISFILYIIKNFIEKE >gi|312979657|gb|ACRM01000008.1| GENE 42 46227 - 47420 419 397 aa, chain + ## HITS:1 COG:PH0421 KEGG:ns NR:ns ## COG: PH0421 COG2244 # Protein_GI_number: 14590338 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Pyrococcus horikoshii # 2 395 9 408 432 67 21.0 5e-11 MKKFNYIFLANLFSALCKFLVLIVLARLGSPVEVGKYNYALVISAPIFLFLSLKIRSVIV TNDNYRPSNHYSTILTINSIAIIFLSIIALIIDSSNFKVLLLVSLIKIIENLKEIAYGIY QKDSEMKYLSMSMISYNFFSFLCFSITFYLTKSLESSLILWLIIAIVSFYIIDKTLLKKE YNIKLKYGKDYQIMKEISLLTFPLSLSTAIGSLNTGIPRILIKSFHGEYYLGVFSAIAYL LVVGNLFANSISQIFLPQLRNFYRLKNYEDYRKTTKKMMFLGFIVGIVGVFLSSIIGKTI LKIVFGNEYANNSIILVILSFGLLFILSGVFLGTSIIATGNYKVNYKISLITLVSTIILS IIFIPRFELIGTAITISFSQLITLIAYYYFYKKVDRS >gi|312979657|gb|ACRM01000008.1| GENE 43 47432 - 47941 305 169 aa, chain + ## HITS:1 COG:mll2311 KEGG:ns NR:ns ## COG: mll2311 COG0110 # Protein_GI_number: 13472117 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Mesorhizobium loti # 82 147 98 165 196 74 51.0 7e-14 MLKKIKNLIFSKNINSKQISKLGVNYGENCRFLGVTKSTFGSEPYLIDIGNHVTITNGVK FITHDGGVWVLRNEHPTIDLFGKIKIGNNVFIGTNSIILPNVSIGNNVVIGAGSIVTKNI PDNCVYAGNPARFIKYTDDYKTKVLTLADNTKNMKKSEKKSYLLAKYVE >gi|312979657|gb|ACRM01000008.1| GENE 44 47953 - 49011 409 352 aa, chain + ## HITS:1 COG:SP0353 KEGG:ns NR:ns ## COG: SP0353 COG0438 # Protein_GI_number: 15900282 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Streptococcus pneumoniae TIGR4 # 1 328 1 341 372 84 26.0 4e-16 MKKILHVFGRMNRGGAELRTKDVIENLNDKYEFHICVLSGKVGILDEKLKKNNVEIHYLP LKSPFFIIRFLKLLKRNKFDIVHSHVLYVSGFIQVLAFLAGVKGRISHFRTSRDLKEINN PLRKFRNNFLGIVLQFFSTKIVYVSEVAKENLIKRKIFKNKHIVIYNGLKKPSNIDLEEK ENIFTNVSRFKDSKNQLFLLDVIEVLKKYYSIDIKIQFLGNYNNEYGREFIKETKKRNLK DNVYLVGEVSNPYPFLCKSKYFLFPSQLEGLPGALIEAHLSKCIAVTSNIKENIEVNEYF PNSSFTIELEKEAWAREIYNLLNNKYEIKFNNLHSFDLETCVNHFEKLYSIY >gi|312979657|gb|ACRM01000008.1| GENE 45 49025 - 50032 1131 335 aa, chain + ## HITS:1 COG:BH3709 KEGG:ns NR:ns ## COG: BH3709 COG0451 # Protein_GI_number: 15616271 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Bacillus halodurans # 1 335 1 336 343 436 61.0 1e-122 MKVLITGVAGFIGSTLAKKLINQGYEVIGIDNINDYYSVELKEDRLKSIGKDHFTFYKTD LEDYEKVNQIFEDEKPEVVVNLAAQAGVRYSLENPKAYIDSNIVGFMNILEGCRHHEVKH LIYASSSSVYGANTNKPFKTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRFFT VYGPWGRPDMALFKFTKAVVDDETIDVYNHGNMMRDFTYIDDIVEAISRLIQKPAQPNPE WSGANPDPSSSYAPYKIYNIGNNSPVRLMEFVEAIENKLGKTAKKNYMDLQPGDVPETYA NVDDLFKNIDFKPQTSIQDGVNKFIDWYLDYYKLK >gi|312979657|gb|ACRM01000008.1| GENE 46 50048 - 51190 1090 380 aa, chain + ## HITS:1 COG:MA1183 KEGG:ns NR:ns ## COG: MA1183 COG0438 # Protein_GI_number: 20090049 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Methanosarcina acetivorans str.C2A # 190 363 195 368 379 63 26.0 5e-10 MKLLFVHDFPAEFYKGDYYSMGFPYSIWERYLSIFDEMIISSRFKSSKDIIEKKQSSGKK VEFRPITSYKSPKSLLNNHKDIIEKITLAIKESDGVLIRVPSVLGFIAAKICKQLNKKYM VEVVGSAYDAFWYHGSIFGKLLASPMELLQKQAVKNATVAIYVTQNYLSNKYPCNGNEFP GISNVQGIAISSKDLSIDKKVNVGLIGSTFVDYKGHETAIKAASLLKNKGIPIQLEFVGE GPSPKFANMAKKFNLENDVIFKGKIYGKEKLNKWFNHLDIYIQPSLTEGHCRAIVEAIGN GVPTLASNAGGNSDSVNKEFLFDAKNYKKLASLIEVLYKDENIRKNNVKQNQNKISVYEN ERLQSQREEALTYYKNNIII >gi|312979657|gb|ACRM01000008.1| GENE 47 51204 - 52544 1003 446 aa, chain + ## HITS:1 COG:VC0924 KEGG:ns NR:ns ## COG: VC0924 COG1541 # Protein_GI_number: 15640940 # Func_class: H Coenzyme transport and metabolism # Function: Coenzyme F390 synthetase # Organism: Vibrio cholerae # 5 446 6 443 446 150 27.0 4e-36 MLQFIYNHTPIFFQNIMVSVQGKIFENQRYTKYYYNELNELRNCKNPFDLQKKRMKEFYN FIENNSKYYQETLKEFSEEIDLNKLSNYPILTKEIVRTNIKNIVTKNSKDLIPLSTGGST GKSLKIYSSPYDMSRRIAYLDYFKEQHGVFKGMRRASIGGKKIIPPRQKRKIFWRYNKQL NQLLFSAYHADGSNLKYYVKQLNDFKPETIDGFPTIIHRIAKFILKNDITLTFSPIAIFP NAEALTDEMKEDIEKAFGCPVRNQYASSEGAPFITENIDGELEINPMSGYFELQKIEGKI YELIVTGFYTTTTPLFRYKIGDSLELYEELPENYTQKDIKIKRIIGRNNDFLRSNERGIV TNVHLSTSLKVLGDKVIDSQFVQNKLDTVEVKLVVDNKADKIKVKRDLEKELALTFGSKT NYDIDFVDSIELTQGGKKRFTINNLK >gi|312979657|gb|ACRM01000008.1| GENE 48 52559 - 53830 1677 423 aa, chain + ## HITS:1 COG:PM1003 KEGG:ns NR:ns ## COG: PM1003 COG0677 # Protein_GI_number: 15602868 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetyl-D-mannosaminuronate dehydrogenase # Organism: Pasteurella multocida # 4 414 7 419 424 457 55.0 1e-128 MDRKIAVVGLGYVGLPVAVTFGKKHEVIGFDINENRIKELKENHDRTNEVTSEDLKATHI NFTSNSEDLKKADFIIVAVPTPIDKNNKPDLTPLLKASETVGKVLTPDTIIVYESTVYPG ATEEDCVPVLERESGLTCGKDFFVGYSPERINPGDKVHTFETITKVVSGQTPEVLDIVAD VYGSVVTAGVHKASSIKVAEAAKVIENTQRDVNIALMNELALIFDKLDIDTNEVLRASGT KWNFLNFKPGLVGGHCIGVDPYYLTHKAQEVGHHPEVILAGRRINDNMSKFIASNVIKGL LKQGLEVQGATVNVLGLTFKENCPDLRNTKVIHIIEELKEYGLDVHVNDVEADKEEAKKF YNIDLEDKQNLPKADAIIFALAHKDYVENKKDYLDLVKDNGVVLDIKGIIEDDEIGNKGL WRL >gi|312979657|gb|ACRM01000008.1| GENE 49 53865 - 54995 1066 376 aa, chain + ## HITS:1 COG:Cgl0349 KEGG:ns NR:ns ## COG: Cgl0349 COG0438 # Protein_GI_number: 19551599 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Corynebacterium glutamicum # 87 360 5 279 294 160 36.0 5e-39 MSNKKIFQLVTVSKSIPLMKGQIEYLRDKGLDVHVVSSEGPEQNTYSSDITHVVNMEREI SLKNDLKSLMNMIRLFKKEKPHIVNSGTPKAGLIGTLAAFITRRPVRIYTVRGLRLETVT GLKYKILYAMEKLAMFCATDIIAISESLKDKIVELGLEKKEHIKVLGHGSSNGINLDNFT KDKTIIPYELKEKLADHFVIGYVGRIVKDKGIHEIIEAFKIIQKNYNKVKLLIVGPIEKD DSISEEDYQYLQNNLNIIMTGHVNDTVNYYNHMDVLVFPTYREGFGNVSIEAQAVEVPVI VNNVTGAKDTLINHVTGYLVEKGNYNQIAQKLEFLINNPAIRKQLGINGRENVKSKFRNE IIWKHLETIYKNNLPI >gi|312979657|gb|ACRM01000008.1| GENE 50 55022 - 55618 792 198 aa, chain + ## HITS:1 COG:PM1011 KEGG:ns NR:ns ## COG: PM1011 COG2148 # Protein_GI_number: 15602876 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sugar transferases involved in lipopolysaccharide synthesis # Organism: Pasteurella multocida # 1 196 1 196 200 256 62.0 2e-68 MLKRLFDIAVSATGLIISAPITLTTAVVISKKLGKPVLFRQVRPGQDGKPFKIYKFRTMS DERDENGELLPDDQRMTPVGTFIRKSSIDELPQLINVLKGDISLVGPRPLLMEYLPLYND EQKKRHNVKPGITGWAQVNGRNAISWDQKFKLDVWYAENQSFKLDMYIIYKTIINILQRK DINAPDHVTAEKFNGNEV >gi|312979657|gb|ACRM01000008.1| GENE 51 55615 - 56235 601 206 aa, chain + ## HITS:1 COG:BS_yvfD KEGG:ns NR:ns ## COG: BS_yvfD COG0110 # Protein_GI_number: 16080477 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Bacillus subtilis # 5 204 4 206 216 159 42.0 2e-39 MSHPIVLIGKGGHSKVIKDIIEEDKQYYVAGYLDHAINEYYMDKEVFYDNLDNIEKYKDK CFFVIAIGNNYVRQKLFKSLDIPVNQYAILVHPSAIVSSSAKVGYGTVVMPYAVINADTT IGKHVIINTGAIIEHDNNIADYVHVSPNATLAGGVTVGEASHIAINAGVLPLVEVGNNCI VGAGATVINHVKSESTVIGTPAKIKE >gi|312979657|gb|ACRM01000008.1| GENE 52 56242 - 57372 1639 376 aa, chain + ## HITS:1 COG:BS_yvfE KEGG:ns NR:ns ## COG: BS_yvfE COG0399 # Protein_GI_number: 16080476 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis # Organism: Bacillus subtilis # 4 275 3 274 301 359 62.0 4e-99 MEEERIFLSRPHMGGTELNYINDAFDKNWIAPLGENVTEFENSMKDYVGVDAAVAVGSGT SAIHLALIESGVQKDDVVFCSSLTFSASANPIIYQGATPVFIDSEMSSWNMSPDALRKAF EVYSEKGITPKAVVAVNLYGQSARMDEIKDICAQYGATLVEDAAESLGAEYHGQKSGTFG KFGIFSFNGNKIITTSGGGMLISNDKKHIEHALFLATQARDKALHYQHSQLGFNYRLSNI SAGIGRGQMEVLDQRIERRREIFDRYNQEFGDIDGFDFQPELPDSKSNRWLTALTIDENK TGFTALDLIDALQKNNIEARPVWKPMHLQPFFESYDYFKENEDNSAYLFEHGVCLPSGSD MTDEQQTRVIEIIKSL >gi|312979657|gb|ACRM01000008.1| GENE 53 57388 - 58332 1061 314 aa, chain + ## HITS:1 COG:SA2103 KEGG:ns NR:ns ## COG: SA2103 COG1316 # Protein_GI_number: 15927890 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 2 312 6 315 315 285 49.0 8e-77 MKKKKSTTFKIIITILILLLVLIIGLVIFAFAKFHSLNNSINEPLDRDHSQLRHKNLKDG DPMTVVLYGIDDDAQRHQENLGQRSDSIVLMSINPKDNKTVMVSVPRDTRTEIVGHNSTE KINHAYAYGGPKMAVNSLEKLMDVPVDHYIAINMDGVKTVVDEIGGVDITSDATFTTKST TPFHFEKGKQYHMDGKQALAYMRARKEEGAGGDGGRQLRQQQVITAVAKEAFSMNSVTKL NGIFKAAQDNLRTDLSFIELNKFKSDYNKADNNVERLTMNGQDDKGEDGLYYFYPNKDSL NKVKQKLKDNLELK >gi|312979657|gb|ACRM01000008.1| GENE 54 58441 - 59916 2053 491 aa, chain - ## HITS:1 COG:SA2420 KEGG:ns NR:ns ## COG: SA2420 COG1785 # Protein_GI_number: 15928213 # Func_class: P Inorganic ion transport and metabolism # Function: Alkaline phosphatase # Organism: Staphylococcus aureus N315 # 1 480 1 473 474 537 65.0 1e-152 MSFINKFGKTTVATSILAASVLGTTHVSFASGAGQGAQDQQGQNGDYMAIGNTKNPKNVI FMVGDGMGPSYNSAYRYYADNPNTKELDQTAFDKYLKGTNRTNPNDPKENVTDSAAGGTA FATGHKTYNGSISVDNDKKPLKSVLEYAKEQGKSTGLVTTAEVTDATPAVYAAHVDSRDK KDEIAQQFYNDKINGQHKVDVILGGGSKYFGKENGHLTEKFQKDGYDYVTNKTDLANSKS DQVLGLFAEKNMPLQIDAPQQNPLLADMEESALSKLEKNDKGFFLMVEGASIDKSGHPND ITGVMSEMSGFDKAFQNAIDYAKNHKDTLVVATADHSTGGLSIAKGKDYVWNPDAIHKMK HSGSYMTEQIAKGKDPETVINEGYGVDFPKKQLEKVKDAAKELKDVKDKAKNDDDPKIAE ATTTLQDAIQKPINDASHTGWTTYGHTGEDVNTYAYGPGSSKFRGNIDNTDSAKNIFDFF SQDVTSNQNQQ >gi|312979657|gb|ACRM01000008.1| GENE 55 60297 - 60470 312 57 aa, chain + ## HITS:1 COG:no KEGG:SH0402 NR:ns ## KEGG: SH0402 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 56 1 56 56 62 58.0 4e-09 MTTLQELFKELDDWEQHSPKSWAGSMGRTAKINDIQRQIKEAITIEDIRKYILNKED >gi|312979657|gb|ACRM01000008.1| GENE 56 60639 - 60806 269 55 aa, chain + ## HITS:1 COG:no KEGG:SH0403 NR:ns ## KEGG: SH0403 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 54 1 54 54 62 75.0 5e-09 MIFVMLSPLLIIVFIALSIMEERKRKKETKHKENKFEQEKNKMSNPNDNNDHDAK >gi|312979657|gb|ACRM01000008.1| GENE 57 60819 - 61484 694 221 aa, chain + ## HITS:1 COG:SA2418 KEGG:ns NR:ns ## COG: SA2418 COG0745 # Protein_GI_number: 15928211 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 221 1 221 221 331 77.0 7e-91 MKVLIVEDDVVIAESLGNELSHWNYEVSIAKQFDNILEEFKTAEPELVLLDINLPTFNGY HWCQEIRKVSNVPIIFISSRTDNMDQIMAIQMGGDDFIEKPFNLSLTIAKIQALLRRTYD LTVSNNEMTVKGCKLVVDEATLYYNNDSVQLSFTELQILNKLFQNEGKYVNRTAIIEKCW ESENFIDDNTLAVNMTRLRKKLQSIGIVDFIETKKNVGYKV >gi|312979657|gb|ACRM01000008.1| GENE 58 61490 - 62386 481 298 aa, chain + ## HITS:1 COG:SA2417 KEGG:ns NR:ns ## COG: SA2417 COG0642 # Protein_GI_number: 15928210 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 5 296 3 294 295 340 59.0 2e-93 MLKAFIKSIRHQMMIVALFLLLFLMIFFLFNLPFNAFFLGMAIILFIMIIFWLIQLSGFQ EAVSLKEEVADLEDELQRVKNEQAAYQVNVENYFLTWVHQMKTPITASKLLLERNEDNVV NRVRQEIIQIDNYTSLALSYLKLMNQETDMSFSKVTINDLVKPLIMKYSIQFIDQKTNIH YTRCEDEVLTDVQWCTIMIEQILNNALKYARGKDIWITFNNENHVLSIRDNGVGISKADL PKIFDKGYSGYNGRLHQHSSGIGLFIVKHISAHLHHKVEVSSTLHEGTTFDIHFPENN >gi|312979657|gb|ACRM01000008.1| GENE 59 62518 - 63267 313 249 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 2 222 1 220 245 125 33 2e-27 MLLDVNNVKKIFGRSLNATTALNGMSFNVDRGEFVAIMGESGSGKSTLLNLIATYDKATE GTITIDAQNIRQLRNKEIAYFRRDHLGFVFQDFNILPTMTNKDNILMPLVLANRSHQTMR HRLYRLSYQLHIEPLLNKYPFEISGGEQQRVAICRALINEPDLLLADEPTGALDSKTSKT IMELFRDINKNEQTILMVTHSAVDASYAKRILFIKDGRLYHEIYRGEELQSEFQKRIADS LAMLHERGD >gi|312979657|gb|ACRM01000008.1| GENE 60 63461 - 65224 1158 587 aa, chain + ## HITS:1 COG:SA2415 KEGG:ns NR:ns ## COG: SA2415 COG0577 # Protein_GI_number: 15928208 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 587 65 663 666 334 33.0 2e-91 MCLFGLLFILYANRFIMRRRQKELAMNMILGMEKKHFRLMLFIEGIYQYIIIGCLSMIGG YLFGALTYMSLNRILGYTHVSLKKYPFDISAMKYTLLMLAIMMLFLFIVNNIKITFQSPI KLIQQQHPTEKQWSKLLLYILLIVGIITVVDSYMIALKDTLILVSLRNIFIALILVTIGT YCLFISLSVLVIDWLQKIPSVYYRPKYFFTISGLRSRMNSNSIGLASLTMLCTFLIVTLG MSVATYRSVDQRANHLMATQYRIELSGDVHHSTTSKHKVRQLENEIKRHADVDAFREYTS GSVAVTYKKGTFVKRDNENSPLDLNSVYLIIMNQKDYNTINHTHLRLKHNEMGILTNHFM FQKLDHIKLMNQTFKTNQLKGDHFSFPVPGAVTLVTHNVNQQRQLIHYYQTTANINSYIA FNLKTKETQSIDHIKSKLMKQYDIQIDNKDELNKDMFDIYGGLIFVGTIVSLVLMIGTFT MMYYKNIAEGYEDRNNYRIMRQVGLEEERIRSVINDQVVIIFTLPIIVSMIHVLCASKMI YTLLGILDVNDIKLFLTTYIGVLVFVMIIYALMYVMTSRVYYRLIHR >gi|312979657|gb|ACRM01000008.1| GENE 61 65316 - 66080 1114 254 aa, chain + ## HITS:1 COG:no KEGG:SH0408 NR:ns ## KEGG: SH0408 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 248 1 255 397 171 48.0 3e-41 MAKQYDDATNRNSNNNIKRTGEHVLTWIGVAIQALVAIMFLMIKPFIGNADFKEQIINET QKQGNEVSITEINNGMDALGGLFNFFTWGAFIPLILAIIGGILINKKPKLAGILLIIAGI LAIATNWISLILWLIAGIMLLVRKPKHDMYDNADYNDHYKRDHHDVNANNNAFILNEEKE RQQQRYIKDNYSNKDQAADNNNEKEHDTHVNDSNDDDYRDQRYSNHKTNQQSNDFIQDEA RKLQEEKNNDPYKY >gi|312979657|gb|ACRM01000008.1| GENE 62 66177 - 67469 1486 430 aa, chain - ## HITS:1 COG:Cgl0697 KEGG:ns NR:ns ## COG: Cgl0697 COG2141 # Protein_GI_number: 19551947 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Corynebacterium glutamicum # 6 427 5 426 438 442 54.0 1e-124 MTHQHQLHLGVLIYGCGHHQAAWQLPNSSIERLGDIHYYQELAQLSEKGLLDVVFFADNQ SFIPSYTSMPSFWFDPLINLTAISQVTQHIGLVPTISSTFSNPFTAARQLLSLDHISGGR VGWNLVTSMTDAEAQNHSMDHLPNHDERYKKAEEFAQVMNGLFDSWHTEDFKPNRHHHTM INRNIKPLHHNGKYFQVHGPLTTPSSIQGKPVAMQAGASKQGIALATKYADAVYSVSWNM KQAKRYRERLDSEMAQRDHKRYIKVFPGLVTYVGHTHEEALKKKAALDQRLPIKAALKQL SFFIQQDCSQWELDAPVPKLPSLEEFNGPAGRYETILEIIQDKQPTVRELLSYLNAGGGH LTLIGTPKEIVDEMERWFNAGVADGFNLMPPSLPDSLDDVVTLIVPELQRRGLYRHQYKG STLREHLDLI >gi|312979657|gb|ACRM01000008.1| GENE 63 67533 - 68282 180 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 3 244 4 238 242 73 25 4e-12 MTRTVLVTGSSRGLGAVIVKTLATQGFEVIINYNQSREAAEALAKELGDKAIAIQADVTQ RAEVDRLVNEATHHFGKIDVVVNNALVNFKFDPNAQKAFKDLAWEDYQQQIDGTLKGAFN VTQSVIPQFIERGSGAIVSIGTNLYQHPVVPYHEYTTAKAGLIGFTRNVAAELGQYGITA NVVSGGLLKTTDASAVTTPDVFDLIAQTTPLRKVTTPQDVANMVAYLSSEAADGMTGQNI TVDGGLTMN >gi|312979657|gb|ACRM01000008.1| GENE 64 68793 - 70385 1978 530 aa, chain + ## HITS:1 COG:BH2222 KEGG:ns NR:ns ## COG: BH2222 COG4146 # Protein_GI_number: 15614785 # Func_class: R General function prediction only # Function: Predicted symporter # Organism: Bacillus halodurans # 1 530 1 529 580 399 44.0 1e-111 MNWLAIILFLAVVMGVSLYAFWRSRKIKTDSADGYFMGGNSLTGFTIASTIIMTNLSTEQ IVGQNGQSYGKGMEVMAWEVTAAVAVVLLAWIFLPKYLRYGVDTISELLEMRYGTFTKRF VSILFIFTYVVSFLPVVLYSGSLVFNKMFNIGKYLGVSDATATIIIAFVIGAVGVIYLFI GGLSLSAFSDSIYGVGLIIGGLIITILGLHHLGDGNFVKGFDHMIQRTPEKLNAFGAIDS DVVPWPTLFFGMFFNNLFFWCANQMIVQKALAGKNLKEAQKGAIYLSLFKVFGPIFTVIP GVIAYNYFNGGITSNDNAYPALIQAILPDWGYGLFGAVIFGAILSSFVGSLNSTTTLFTL DFYKPIFGKRASDQHIARVGHIATVVIGIIVVGISPLIALFPSGLYAIVQQFNGVYSMPV LALVLVAFYSKHTSKLGAKVALVTHIVLYAAISFMVPQLNYLYTFSFMFFIDLAIILVFN KFKPSNTFDLNTNQAKVDLTPWKYRYVTGGIVLGLVVLAYIIFSPLVLAK >gi|312979657|gb|ACRM01000008.1| GENE 65 70476 - 71678 1371 400 aa, chain + ## HITS:1 COG:no KEGG:SH0409 NR:ns ## KEGG: SH0409 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 2 400 3 398 398 566 71.0 1e-160 MHKIGFIPSPGVSHKHVEAVIPDIKEQLNQRVNDQQEWVFQLHVDLMIGSAEDVHESIDK AAKMKDQHDWDFVVCITDLPSISGNKVVISDFNNDKQVAMLSLPSLGWIDLRRKLRDSLT SIIEQLYYSTSRVAPKIHPLIHPKAVEPNEDETPKQRYIHRWFILSWIQLILGLTRANEP WKNIFNFKKIISVAFATGTYVSIFSMPWELSIQYSIVRFIILMLIAILGMTGWLLYAHQL IERKTAKSQRVYRYIYNFTTIFTLFIITLLNYIILYLLLAISVSLFVPPSLFNQWTSAHP HFTFINYVKLVWFVSSLGLLAGAMGSTVENEEKIRQITYSYRQYHRYKEAEQEKKEKEQA QSSSHDASNQQVEESASNKQNNDNQQDEHKKQDHREEETT >gi|312979657|gb|ACRM01000008.1| GENE 66 71675 - 72781 1152 368 aa, chain + ## HITS:1 COG:no KEGG:SH0410 NR:ns ## KEGG: SH0410 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 368 1 368 372 586 77.0 1e-166 MSEEKIIGLVVAPGVTEKLAQSLINDIPNILSEQDNHQRDWKVDLVVDPLTGFAESVEEI FKKVQDYHNKREWDYVVGITDLPMFYHQNVLALDINKKNGAAIFSYPAFGWRPVKNRFKH AIVTIINELHYSERAHVGYDDNNRVKKEINKQFPFSRIEKTEVHLKETGNNHLRYLSNSR SLGMIRLVSGMTFANNPLNMMASLSNIVAIAFTTGAFGLIFSTMWNMGLDFSVWRLFGIS IMAILGMLVWIMVSHGLWESTKKAKHKRIVMLYNLTTIMTLLIAIVIYYMILYLLFLIAE LVLLPPGFLGQQVGLKGPASVQLYLSIPWFATSISTVAGAIGAGLLNDQLIKESTYGYRQ KVRYEKNN >gi|312979657|gb|ACRM01000008.1| GENE 67 72874 - 72984 131 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKYKREWIYGFSSMTEKEVKKIVGKYKIHIRVYRL >gi|312979657|gb|ACRM01000008.1| GENE 68 73289 - 74020 738 243 aa, chain + ## HITS:1 COG:BS_cysH KEGG:ns NR:ns ## COG: BS_cysH COG0175 # Protein_GI_number: 16078621 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes # Organism: Bacillus subtilis # 6 238 2 232 233 310 60.0 1e-84 MSVSKITYESFDGDPFIDSISTDDATKGAYEILKWAYTTYGEDIVYSCSFGAESMVLIHL IYQIKPDAQIVFLDTDLHFQETYDLIDRVKERFPKLRIEMKKPELTLEEQAEKYNPALWK NNPNQCCYIRKIKPLEEVLGGAIAWISGLRRDQSPTRAKTNFINKDERFKSIKVCPLIYW TEDDVWDYIKQHDLPYNELHDQHYPSIGCIPCTAPVFNSDDSRAGRWSSFEKTECGLHVA DKP >gi|312979657|gb|ACRM01000008.1| GENE 69 74165 - 76036 2217 623 aa, chain + ## HITS:1 COG:SA2413 KEGG:ns NR:ns ## COG: SA2413 COG0369 # Protein_GI_number: 15928206 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, alpha subunit (flavoprotein) # Organism: Staphylococcus aureus N315 # 7 623 1 626 626 801 65.0 0 MIEVDELNLSVTNSPFTEGQATQINELLQTLTPEQKVWLSGYLVANQQLTSGTSETQGSQ IGAISKDTETMLQQNEPTIQPEKRAITLLYGSETGNAQGLAEIFEERLSNIGHNVTLKAM DEFKPKNLKNVEDLFIITSTQGEGDPPDNAAELHEFIHGRKAPKLEGVRFSVLALGDQTY EFFCQTGRDFDKKLEELGAERLYERVDCDVDYEEDAEKWMANVINTIDSASEGTQSEQVV SESIKSAKEKKYSKSNPYQAEVLENINLNGRGSNKETRHIEFLLDNFGEEYEVGDCLVVL PQNDPALVELLMSTLGWDPEDQIQISEDGDTISLEEALTSYFEITKLTKPLLQNAAAYFD NEALEDKVQDSEWIQNYIEGRDFIDLLNDFPPEELEPEDLYQILRKLPPREYSISSSYQS LPDEVHITVGAVRYNTHGRERSGVCSVQFAERIQPGDTVPIYLKRNPNFKFPKDGETPVI MIGPGTGIAPFRAHMQEREEYGYKGNTWLFFGDQHFTTDFLYQTEWQEWLKDGVLEKMNV AFSRDTDQKVYVQHRIAEHSKEFNEWLEKGASIYICGDEKNMAKDVHQAIRNVLVKEQNL TEEDAESYLKQMKKDKRYQRDVY >gi|312979657|gb|ACRM01000008.1| GENE 70 76055 - 77776 2207 573 aa, chain + ## HITS:1 COG:BH0610 KEGG:ns NR:ns ## COG: BH0610 COG0155 # Protein_GI_number: 15613173 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfite reductase, beta subunit (hemoprotein) # Organism: Bacillus halodurans # 19 572 16 571 572 789 65.0 0 MAKTIKQIADELNENLDALEHLKTESNYLRGTIEEGLADPLTGAISDDDTKLLKFHGSYQ QDDRDVRDERRKQKLEPAYAFMIRVRLPGGKATPEQWIAMDDISNNYANHTLKLTTRQTF QFHGILKRNLKASMKKINESVLDTIAACGDVNRNTMCNPNPYQSNINKEILDYATAISDH LLPKTNAYHEIWLDGEKVLDSKEEVEPMYGEKYLPRKFKIGIAVPPSNDIDVFSQDIGLI AIVENDELVGFNVAIGGGMGMTHGNPDTYPQVGRIAGFIPKDKVIDVCESLLTIQRDLGN RSNRKNARFKYTVDRFGVDNIVKELNTRLGWEISEAREFKFEHNGDRLGWIEGEKGVWNY TLFIQNGRVKDTEDYKLKTALREIAETHTGDFRLSPNQNLIIANVTEEKKADIQSLIDKY GLTDGKNYSGLRRNSMACVAFPTCGLAMAESERYLPTLLSKIEDLLDEAGVSEEEITIRM TGCPNGCARPALAEIAFIGKAPGKYNMYLGGSFNGDRLNKLYKENIDEKEILESLRPILM DYGKSRLEGEHFGDFVIRSGVVAKVHDGRDFHS >gi|312979657|gb|ACRM01000008.1| GENE 71 77812 - 78576 839 254 aa, chain + ## HITS:1 COG:BS_ylnD KEGG:ns NR:ns ## COG: BS_ylnD COG0007 # Protein_GI_number: 16078625 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Bacillus subtilis # 1 252 1 254 257 277 55.0 1e-74 MGKVYLVGAGPGDPDLITVKGMKAIQVSDVILYDRLVNKDILDFAKPNTKFFYCGKNPNK HSLPQEETNRMLVNLAKKGHTITRLKGGDPFVFGRGGEEAEILANNQIPFEIVPGITSGI AAPAYAGIPVTHRDYSSSVAFVTAVNKPGMTKEAYWEHLAHGPETLCIYMGVKRLPEICE LLVRHGKSVDTPVALVHLGTTVSQKTVTGTLGSIVQCASEIKNPAMIVIGDVVNMRQKIS WFKEQVSDVEMTLP >gi|312979657|gb|ACRM01000008.1| GENE 72 78610 - 79221 565 203 aa, chain + ## HITS:1 COG:SA2412 KEGG:ns NR:ns ## COG: SA2412 COG1648 # Protein_GI_number: 15928205 # Func_class: H Coenzyme transport and metabolism # Function: Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) # Organism: Staphylococcus aureus N315 # 3 202 2 201 201 171 49.0 6e-43 MNHMPLMIDLSQKSIVIVGGGKVATKRASTLIEYCDDVHIVSPIISTTLKELLDNEMITW SQKEFEPQDVEHADLVVIATNNNAVNTKVLESVPHYALCNHASKAQVGNVTIPSILKRGK LSISVSTNGASPKLNKKIVSRISDMYDESYEMYIDFLYESRQLIKRLSIEPSRKQDLLQH ILSDEYLDEVKQREFTRWLHLQV >gi|312979657|gb|ACRM01000008.1| GENE 73 79243 - 80118 1018 291 aa, chain + ## HITS:1 COG:BS_ytnM KEGG:ns NR:ns ## COG: BS_ytnM COG0730 # Protein_GI_number: 16079980 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Bacillus subtilis # 1 286 1 288 300 241 46.0 1e-63 MRKLFIFALAGFLAQLVDGSLGMGFGASSSSILLTYGIAPAIVSATVHFSEIATTAASGT SHWKFENVHKPTMLKLAIPGSISGFIGAALLTQIHGDYIKPYIALFLLSMGFYILYQFLF KRHKDFHTHVGTLSSVKLVPQGAVAGFLDAIGGGGWGPVNTPLLLASHKIQPRYAIGTVS ASEFFVTLSTSLSFIIFLGFTQINWWFVIALSIGGMIAAPISAYLTKILPINILAICVGG LIIFTNSNALMTYFIKDTTVINVIRFAIICAIIVLVIITIIRNKKLSFSYK >gi|312979657|gb|ACRM01000008.1| GENE 74 80164 - 81342 1646 392 aa, chain + ## HITS:1 COG:BH1487 KEGG:ns NR:ns ## COG: BH1487 COG2046 # Protein_GI_number: 15614050 # Func_class: P Inorganic ion transport and metabolism # Function: ATP sulfurylase (sulfate adenylyltransferase) # Organism: Bacillus halodurans # 13 392 5 378 381 489 63.0 1e-138 MTTNEDIINYTIKPHGGELINRVVEGKEREALIEKANTFKSLTLNPWSISDLELIAIGGF SPLTGFMGEADYKKVVEDTHLENGLVWSIPITLPVTETQASEFNIGDDIALYGEDGVLYG TLKLEEKYTYDKEKEAQNVYGTTEEAHPGVKKVYEKGNVYLAGPIQLVNRPKHDEFSDYH LDPAETRQLFKDLGWKTVVGFQTRNPVHRAHEYIQKSALEIVDGLLLNPLVGETKADDIP ADVRMESYQAILKNYFPKDRARLVIYPAAMRYAGPREAILHATVRKNYGCTHFIVGRDHA GVGDYYGTYEAQELISQFEDELDIHILKFEHAFYCKKCSNMATAKTCPHDASDHVHLSGT KVREKLRNGESLPKEFSRPEVAEVLIKGLRQK >gi|312979657|gb|ACRM01000008.1| GENE 75 81361 - 81960 837 199 aa, chain + ## HITS:1 COG:BH1489 KEGG:ns NR:ns ## COG: BH1489 COG0529 # Protein_GI_number: 15614052 # Func_class: P Inorganic ion transport and metabolism # Function: Adenylylsulfate kinase and related kinases # Organism: Bacillus halodurans # 2 193 4 195 202 261 66.0 5e-70 MSQSTNITWHDSEVTKEDRQHQNGHKSAVIWFTGLSGSGKSTISVALEKALFEKGKHSYR LDGDNVRHGLNKNLGFSPEDRKENIRRIGEVSKLLVDAGTIAITAFISPYREDRDEVRDI LEDGEFIEVYTECSVEECEKRDPKGLYEKARSGKIKEFTGISAPYEAPKHPEITINTETH SIDESVEHILNYLKEHKYI >gi|312979657|gb|ACRM01000008.1| GENE 76 82388 - 83173 1037 261 aa, chain + ## HITS:1 COG:SA2093 KEGG:ns NR:ns ## COG: SA2093 COG3942 # Protein_GI_number: 15927879 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 1 260 1 266 267 155 60.0 6e-38 MKKIATVTIATAGIATVGFAHHDAHAAENNGYNPNDPTSYSYSYTIDQQGNYHYTWKGNW SPDRLNHTNDSNHSQSNYNHNYNNNSYNYNSNYSYTTNNNQTSTNNNQSYTTNNTTGGLG ANTASTSNSNVKVTTQSAPRTQSTASTQAFSGKTNSGANYYTWGQCTYYVYDKVGGSIGN TWGNANNWANAAAQSGYTVNNTPKAGAVMQTTQGGYGHVAYVENVNSDGSVTVSEMNYQG VGVVSTRTISASQASSYNYIS >gi|312979657|gb|ACRM01000008.1| GENE 77 83394 - 83636 323 80 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475538|ref|ZP_04060256.1| ## NR: gi|228475538|ref|ZP_04060256.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 80 1 80 80 145 100.0 7e-34 MALGVLQWILVIAIVVITIGVIFGLIWGSLFEERFYRSRSKKEEEARIEKNLKMAKGHTD DDVAYDEEGRASLNEDDKKQ >gi|312979657|gb|ACRM01000008.1| GENE 78 83802 - 85094 1658 430 aa, chain + ## HITS:1 COG:ECs5119 KEGG:ns NR:ns ## COG: ECs5119 COG2704 # Protein_GI_number: 15834373 # Func_class: R General function prediction only # Function: Anaerobic C4-dicarboxylate transporter # Organism: Escherichia coli O157:H7 # 3 424 1 428 433 176 29.0 1e-43 MLLFIVEIIIMIVAIMLGLRTAGALGCGIFAIVAQLIMIFGFQLPPGSAPVTAVLIILAI GIAGGTLQATGGIDYLVYLASKIIERFPKSIIFIAPMIVFVFVFGVGTANIALSLEPIIA QTAVKAKIQPKRPLIASVLTANLALLCSPAASATAYVISVLAGHDISMGQYLSIVLPTSL ITMFMLSIFCTFVGRKNTITESEIAHTPDVEVNHAFSTRVKIGVLAFILCVFGILTFGIF PQFMPSFNVNGKDVTVSMTEIVQFFMYLSAAINLLMLKVNTSDILSSNITQSAIGALFAV LGPGWLGATVFNAPHNLHIIQNDVGKTIQHMPWLVIILVAVVAMIVISQTATASIMVPIV MSMGIPPMYFVAMVQTLNVNFVIPAQPTLLFAVNLDETGRTRPTSFIIPGFFAIGVSVIV GFIIKIILGY >gi|312979657|gb|ACRM01000008.1| GENE 79 85524 - 87146 1591 540 aa, chain + ## HITS:1 COG:SA2408 KEGG:ns NR:ns ## COG: SA2408 COG1292 # Protein_GI_number: 15928201 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Staphylococcus aureus N315 # 1 540 1 540 540 926 87.0 0 MKKEKIMDWPTFIGTVIVLLAAVIPMMVFPSASEKVITDINSAISNSIGSVYLFIGLAVL SFVLYIAFGRYGNVTLGKASDKPEFNNFSWAAMLFCAGIGSDILYWGVIEWAFYYQVPPN GAKGMTDEALTYATQYGMFHWGPIAWAIYVLPALPIGYLVFVKKQPVYKISQACRPVLKG QTDKFLGKLVDILFIFGLLGGAATSLALGVPLISSGIERLTGIDGDNMVIRSIILFTITV IFAISSYTGLKKGIQKLSDINVWLSFLLLAFVFIVGPTIFIMETTLTGFGNMMRDFFHMA TWMEPFGGIRNRKETNFPQDWTIFYWSWWLVYAPFIGLFIARISKGRRLKEVILGTIAYG TLGCVLFFGIFGNYAVYLQISGQFNVVDFLNKHSTEATIIEVMHQLPMGSLIIVLFLISA FLFLATTFDSGSYILAAASQKKVIGEPLKANRLFWAFALCLLPFSLMLVGGERALEVLKT ASLLASVPLLFIFTFMMISFIITLNKDRIKLETRADKLKEVERRSLRIVQVKSDPEDDNL >gi|312979657|gb|ACRM01000008.1| GENE 80 87240 - 87794 554 184 aa, chain - ## HITS:1 COG:SA2407 KEGG:ns NR:ns ## COG: SA2407 COG1510 # Protein_GI_number: 15928200 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 181 2 182 188 218 69.0 4e-57 MSNSYNINQKIEEAKDLVINSIGETMDLYGTNRSVGNLYGTMVFEGSMTLDEMREHLQMS KPSMSAGVKKLQEYDIVKQQFTRGSRKQHFIAEKDFFNFFRNFFTQKWEREIDTNLEATK KAENILQNIIQTNNLSEEEKEKIDSIQSQLNHTKLYYKWLENLISAIESGDIFEHYPIPK EEDL >gi|312979657|gb|ACRM01000008.1| GENE 81 88033 - 89523 2025 496 aa, chain + ## HITS:1 COG:SA2406 KEGG:ns NR:ns ## COG: SA2406 COG1012 # Protein_GI_number: 15928199 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 496 1 496 496 893 89.0 0 MELVKALSNRQYINGEWVESANKNTRDIINPYNQEVIFTVTEGTKEDAEQAILAARRSFE NGEWSQETSEVRGKKVRAIADKITENRDELAKLETLDTGKTLEESYADMDDIANVFNYFA GLADKDGGEIIDSPIPNTESKLVKEPVGVVTQITPWNYPLLQASWKIAPALATGCSLVMK PSEITPLTTIRVFELMEEVGFPKGVINLILSSGEEVGDTLSGHKEVDLVSFTGGIETGKH IMKNAANHVTNIALELGGKNPNIIFDDADFELAVDQALNGGYFHAGQVCSAGSRILVHND IKDKFEKALIERVGKIKLGNGFDSDTEMGPVISPEHRDKIEKYMKVAKDDGATIAIGGKR PNDEDLKDGLFFEPTVITNCDTHMRIVQEEVFGPVVTVEGFDNEEEAIALANDSIYGLAG AVFSKDIGKAQRVANKLKLGTVWINDFHPYFAQAPWGGYKQSGIGRELGKEGLEEYLISK HILTNRNPEPVNFFSK >gi|312979657|gb|ACRM01000008.1| GENE 82 89660 - 91366 2182 568 aa, chain + ## HITS:1 COG:SA2405 KEGG:ns NR:ns ## COG: SA2405 COG2303 # Protein_GI_number: 15928198 # Func_class: E Amino acid transport and metabolism # Function: Choline dehydrogenase and related flavoproteins # Organism: Staphylococcus aureus N315 # 2 567 3 569 569 1063 90.0 0 MSKNQSYDYVIIGGGSAGSVLGNRLSEDKNKEVLVLEAGRSDYPWDLFIQMPAALMFPSG NPFYDWRYQTEEEPHMGRKVDHARGKVLGGSSSINGMIYQRGNPMDYEGWAEPEGMETWD FAHCLPYFKKLEKTFGAAPYDKYRGHDGPIKLKRGPATNPLFKSFFDAGVEAGYHKTNDV NGYRQEGFGPFDSQVHNGRRVSASRAYLRPAMKRKNLTVKTRAFVTKIHFEGKKATGVTF KRNGKLHTVNAGEVILSGGAFNTPQLLQLSGIGDSEFLKSKGIEPRMHLPGVGENFEDHL EVYIQHKCKQPVSLQPSLDVKRMPWIGLQWIFARKGAAASNHFEGGAFVRSNNQVAYPNL MFHFLPIAVRYDGQKAPVAHGYQVHVGPMYSNSRGSLKIKSKDPFEKPSIVFNYLSTKED KQEWVEAIRVARNILSQPAMDPYNGGEISPGPSVQTDEEILDWVRKDGETALHPSCSAKM GPASDPMAVVDPLTMKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIRGKKPL EPQYVDYYKHGVSDENAGAMEFDPYYKH >gi|312979657|gb|ACRM01000008.1| GENE 83 91541 - 92677 1186 378 aa, chain + ## HITS:1 COG:SA0098 KEGG:ns NR:ns ## COG: SA0098 COG1473 # Protein_GI_number: 15925806 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 1 375 16 388 392 563 73.0 1e-160 MIEVRRHLHEYPELSFHETETPKYIANFYKDKDCKVETNIGQHGVKVTIDSGKPGKTIAI RADFDALPIQEDTGLSFVSKNEGVMHACGHDAHTAYMLILAETLIEMKSQFSGKVIVIHQ PAEEMPPGGAKGMIENGVLDGVDHVLGTHVMTNMAPGKVYYHKGNVQTGRSYFKLIVKGE GGHGSSPHTANDAIVAGAHFVTTAQTVVSRRLNPFETGVVTIGSFDGKGQFNVIKDKVTI EGDVRALTDATRDRIETALKQMVHGLEETFGVNCEFTFSKDYPALYNDPDFTEYVAETIK QSKLADVKGVEICEPQPPSEDFAFYAKTLPSTFIYSGAKPRKGKAYPHHHPKFTIDESSM LVAAEAVGAVVLNYLTIE >gi|312979657|gb|ACRM01000008.1| GENE 84 92808 - 93014 195 68 aa, chain + ## HITS:1 COG:no KEGG:SH0434 NR:ns ## KEGG: SH0434 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 66 1 66 70 97 71.0 1e-19 MSFYDFMQGFIDDKTPLGELASWINQDQDFPKHEYLAENILDYFSKMSMLDHECLEIVKR SLSLYEGR >gi|312979657|gb|ACRM01000008.1| GENE 85 93078 - 93572 516 164 aa, chain + ## HITS:1 COG:SA2403 KEGG:ns NR:ns ## COG: SA2403 COG2329 # Protein_GI_number: 15928196 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Staphylococcus aureus N315 # 1 147 1 146 147 182 61.0 2e-46 MTLTDSYKTYVIEEKEDQTMSIEKNNDVQLYTVLESINELTNDSMCVLNHLFVNEGNEPQ FESKFLKRTKYLQDVPGFKALRFLRPQTKHRHYIILTLWKDRQSFYDWQSSDAYGKTHKK RGTKQGVDNKIVNRDLSYNVRIELANLETSIDIDNMFNIQRLSF >gi|312979657|gb|ACRM01000008.1| GENE 86 93704 - 95296 2124 530 aa, chain + ## HITS:1 COG:SA2402 KEGG:ns NR:ns ## COG: SA2402 COG0365 # Protein_GI_number: 15928195 # Func_class: I Lipid transport and metabolism # Function: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases # Organism: Staphylococcus aureus N315 # 1 523 8 530 539 828 75.0 0 MNHLNLLAPETYNIVSEIEKHASNQNKQAIIYENGVEEPISVTYSELIKNANKVGHVLLN HGLKKGDKVLIMMPRAIITYELYIAALKLGIAIIPSSEMLRTKDLQYRITHGEINAVIAL ADFIEEFRDIKEYHELTKFVINGNEENWISIEEEKVKQSDELDTANTTRDDVAILSYTSG TTGNPKAVTHSHGWGYAHMKMAPEHWLAIKEDDLVWATAAPGWQKWVWSPFLSIMGSGAT AFVYNGKFNPSRYLSLLQKFKINVLCCTPTEYRMMAKLDNLDKYNLDHLHSAVSAGEPLN REVVEQFRKHFNLTVRDGYGQTESTLLIGFLKDTEQRPGSMGKAIPGSRVAVVDDEGNKV DTNVKGNIALPLDFPGLFKGYFKDEKRTKDAHAGDYYITGDLAHIDEDGYFWFEGRRDDI IISSGYTIGPFEVEDALTNHEAVKECAVVASPHPIRGNIVKAFIILKEGYKPSDDLVKEL QTFSKKVVAPYKYPRAIEFVEDLPKTNSGKIRRVELREAERTKHNNAQNK >gi|312979657|gb|ACRM01000008.1| GENE 87 95510 - 98134 2918 874 aa, chain + ## HITS:1 COG:lin1981 KEGG:ns NR:ns ## COG: lin1981 COG0574 # Protein_GI_number: 16801047 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate synthase/pyruvate phosphate dikinase # Organism: Listeria innocua # 1 859 1 859 879 958 55.0 0 MTKYIYAFDEGQKSMRDLLGGKGANLSEMKRLGLPVPDGFTITTTACIEYLKQGKSLSTE IKTELIDHLASFSERTGKIFSSDTNLLLVSVRSGAKISMPGMMDTILNLGLNDENVEKLA EKTGDKRFAYDCYRRLLQMFGEVVYSVPMQAFDTYFEQYKKQHHFENDAAISADGLKEIC KRFKEIYVEEVHQPFPQEPLKQLEEAIEAVFKSWDNDRARIYRDLNDIPHDIGTAVNIQE MVFGNSGDNSGTGVAFTRNPVTGENKLFGEYLLNAQGEDVVAGIRTPKDISTLHDQMPEV HQEFVDVTKQLEKHYKDMQDIEFTIENGQLYLLQTRNGKRTARAAIQIAVDLVNEDIITK KEAMKKVEVKSIDQLLHPNFDESSLKEATVVSKMGLPASPGAATGQIVFTAEEAKAQSEQ GKKVILMRPETSPEDIEGMIASEAIVTTHGGMTSHAAVVARGMGKCCVTGCSDLEINTSA KTVYYGDQTLHEGDMVSVDGSEGDIYLGEIKTVNAEHSESFNQFMEWSEKTARLKVRMNA ETPQDIKVGYQFGAKGIGLVRTEHMFFGAERLVEMRRFILSSSREDRLEALNHIKQYQVE DFKEIFKLSGEHPTIVRLLDPPLHEFLPHSEEDIANVAKQLNIPKETLDKRIVDLNEVNP MLGHRGCRLAITYPELYEMQVEAIIESVFKLKEEGIQCKPEIMIPLVSTVEEFTTLKENL VKTITQLEKQHQKSVDYLMGTMIETPRACLISDELAKHCDFFSFGTNDLTQLSFGFSRDD AGKFINVYTERNILKLDPFQTLDKDGVGKLIEVAVKQAKKVNENIKIGVCGELGGDAKSI HYFNHLSIDYVSCSPFRIPGAILATAQSQVEESE >gi|312979657|gb|ACRM01000008.1| GENE 88 98141 - 98971 1029 276 aa, chain + ## HITS:1 COG:BH1373 KEGG:ns NR:ns ## COG: BH1373 COG1806 # Protein_GI_number: 15613936 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus halodurans # 13 273 10 269 270 211 42.0 2e-54 MNEVESQAHNLKLFIVSDSIGETAQRMIHATLTQFPDLNNVEIKKFPYIKDEEEFLNILN LAKEHNAIVATTLVSESFNALGHEFAREHDIPYVDYMSDLISIVEHVTGEKPLMESGALR KLNEAYFKRIEAIEYSVKYDDGKHFSDIGEADALIVGVSRTSKTPLSMYLANKGYKIANI PLVPEVSIPDSVFKQKGLQVFGLTASPQYIANIRKSRAETLGLSKASQYNNLNRIKEELS YAEEVFKKLNATVINTEYKSIEESAFYIEKFLQNNK >gi|312979657|gb|ACRM01000008.1| GENE 89 99292 - 100794 1734 500 aa, chain + ## HITS:1 COG:SA2400 KEGG:ns NR:ns ## COG: SA2400 COG0579 # Protein_GI_number: 15928193 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Staphylococcus aureus N315 # 2 496 4 498 498 807 77.0 0 MTESKDMIIVGAGVISTTVASMFNELVPNWNIDLYERLDRPGIESSNERNNAGTGHAALC ELNYTVRQPDGTIDIEKAKEINEQFEISKQFWGHLVESGQIKDPRDFIHPLPHISFVRGK NNVQFLKERYEKMKDFPMFDDIEYTEDIEVMRKWIPLMMQGRFDDGLMAASKIDEGTDVN YGELTRKMAHNLQNDDSNVNVNYNHEVQDFKRLSNGKWQVKIKDLANNKVFTKEADHVFI GAGGGSIPLLQKTGIEEGKHIGGFPIIGQFIACTNPEVIEQHDAKVYGKEPPGTPPMTVP HLDTRYIDGERTLLFGPFANVGPKFLIHGSNLDLFKSVKPHNITTLLAAAVKNMSLLKYS FDQIIMTKEGCMNHLRTFYPEARDEDWQVYTAGTRVQVIKDDEKEGKGFIQFGTEVVDSK DHSIIALLGESPGASTSVSVALEVIERNFEQYLDEWKPKIKKMIPSYGESLIHDVDLMRK TRRLTSKQLELGFYENTNAK >gi|312979657|gb|ACRM01000008.1| GENE 90 100936 - 101826 1225 296 aa, chain - ## HITS:1 COG:SA2399 KEGG:ns NR:ns ## COG: SA2399 COG3588 # Protein_GI_number: 15928192 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 1 296 1 296 296 489 92.0 1e-138 MNKEQLEKVSHGKGFIAALDQSGGSTPKALKEYGINEDQYSNDDEMFQLVHDMRTRVVTS PSFTSDKILGAILFEQTMDREVEGKYTGDYLADKGVVPFLKVDKGLAEEQNGVQLMKPID NLDETLDRAVERHIFGTKMRSNILELNEQGIKDVVEQQFEIAKKIIAKGLVPIIEPEVNI NAKDKAEIEEVLKAELKKGLDSLNDDQLVMLKLTIPTKANLYKELADHPNVVRVVVLSGG YSRDEANKLLKDNDELIASFSRALASDLRAGQSKEEFDKALGDAVDSIYDASVNKN >gi|312979657|gb|ACRM01000008.1| GENE 91 102003 - 102494 342 163 aa, chain + ## HITS:1 COG:CAC2481 KEGG:ns NR:ns ## COG: CAC2481 COG0563 # Protein_GI_number: 15895746 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Clostridium acetobutylicum # 1 132 1 137 177 100 43.0 1e-21 MKQRILIIGSPGSGKSTLAYQLHLKYQLPLYHIDQIQWLNNKNVITFEELKQKLESIVVK EEWIIDGNYSSTLSMRLKYATKVIWIKEPKVKCIFRVIKRYIYSLFKREHIGGNPKTLSF EFIKYIWDFPKNNEQFIMQQMKRSIPNVQWIIDDSKALSLRFL >gi|312979657|gb|ACRM01000008.1| GENE 92 102710 - 104044 1606 444 aa, chain + ## HITS:1 COG:FN0456 KEGG:ns NR:ns ## COG: FN0456 COG1306 # Protein_GI_number: 19703791 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Fusobacterium nucleatum # 47 399 27 376 380 211 39.0 3e-54 MKKNKIFAVLTTSALLLAACSNGDNASDSGQKDGNQKNEQSSNKSGNSQSDALKKNNDKN TNENKVDYPKDGVKGIYVTSNSTQGKKMDELVKFIKDSNLNTMVIDVKDDTGNITMKLNT GNKQVDKNTLDIVDGKKLLKKLHDNNIYPIARIVIFKDTKLANEHPEWTFKNSDGSVWTN GKGDSFVNPFMKEVWKYDIDVAKAAAKAGFQDIQFDYVRFPEGFENQADSLTYNKGEYKN SQMSSGDQRVDTITKFLEYANKELKPMGVNVSADVFGYSALVENAPGIGQSFPKISKNVD AISSMIYPSHWSNGDFGLQAPDTEPYKTVNRYIQKENSLLDTLGKDKPISRPWIQDFTAS YLGAGNYIDYDTRAISEEVQALKDNGVNEFLLWNAGNDYTEGVNYNPKKGNAKEQDPEGV EQTNDKEDQHSDSQDNEQADNKNK >gi|312979657|gb|ACRM01000008.1| GENE 93 104167 - 104805 637 212 aa, chain - ## HITS:1 COG:no KEGG:SH0456 NR:ns ## KEGG: SH0456 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 201 1 205 209 186 53.0 4e-46 MKKVSFVASTLLTSTMLLTTTQSVEAHTTNLVTKENAKQIATDALSNSGGNPNLQRLGRT VDKGDYFEIISHNRLNEGNGMYKVHKNGEVEYKNGRYSDFNQLQDTRIHAESGIAKAAKT TSSNHKQVNSVDCARELNRYYVGTVASSEVPSSKSLKDTQTSQSSVKTLPSTGDDTQQHS IQLLASLLLVMGTSLLLKQKHHSHSYLSTEHF >gi|312979657|gb|ACRM01000008.1| GENE 94 104972 - 105397 317 141 aa, chain - ## HITS:1 COG:no KEGG:SH0457 NR:ns ## KEGG: SH0457 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 141 1 141 141 107 67.0 1e-22 MIRYFYHCLSALVISIILLITMTIMDGIVQSTHLTLLLINIDFLIDPSKTPLLLELAIHV FIGWLIYFIFLLIYHVFKPLYKISYVLLMIVFASLYPSLVVMAKRSFFHFSWNEYGLWMI AHIIFMILMACSIPYFSKKKY >gi|312979657|gb|ACRM01000008.1| GENE 95 105760 - 106575 1152 271 aa, chain + ## HITS:1 COG:SA0771 KEGG:ns NR:ns ## COG: SA0771 COG1464 # Protein_GI_number: 15926499 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 1 267 1 271 273 301 60.0 7e-82 MKKLIGMISILLVTITLAACGNQKEDNKKITVAASPAPHGDVLKKAKEEMKKKGYDLEVK EVNDYKVPNKLLDKGDVDANFFQHVPYLNAEKKSHGYKIEELGKVFTTPMGVYSKKYKNL KDIPDGSTIYVSNNPAEEGRFLSFFVNEGLIKLKKGVKIENAKFEDIAENKKHLKFNHQQ GAEFLPKTYKNGEGAAVIINSNYALDNGLKPSKDAIVMEGKSSPFANTIAVQEGHKNDEK FQTLLKVMQSKEIKAYIKKEYGDDVIPYENK >gi|312979657|gb|ACRM01000008.1| GENE 96 106777 - 108114 1497 445 aa, chain + ## HITS:1 COG:SA2397 KEGG:ns NR:ns ## COG: SA2397 COG0160 # Protein_GI_number: 15928190 # Func_class: E Amino acid transport and metabolism # Function: 4-aminobutyrate aminotransferase and related aminotransferases # Organism: Staphylococcus aureus N315 # 1 445 13 457 457 792 83.0 0 MSKAEDMIKEDSKYFATSGRIKYYPLVIDHGYGATLVDIDGKEYIDLLASASSQNVGHAP KQVTEAIKKQVDKFIHYTPAYMYHEPLVKLSKKLCDIAPGDYEKRVTFGLSGSDANDGII KFARAYTGRPYIISFTNAYHGSTFGALSMSAISLNMRKHYGPLLNGFYHIPFPDKYRGMF EQSKSNTVEEYLAPLKEMFVKYVPAEEVACIVLETIQGDGGLLEPVEGYFEALEALCREY GILIAVDDIQQGLGRTGSWSSVDHFNFTPDLITFGKSLAGGLPMSAIVGRKEIIESLEAP AHLFTTGANPVSCEAALATIEMIENDDLLTVSSKKGNYVRQRMNQWVDQYDYVGDVRGIG LSIGIDIVKDKQSKERAAEEALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDKAL DVIEEALQALQDGDLNEYSIEGQGW >gi|312979657|gb|ACRM01000008.1| GENE 97 108243 - 109694 2230 483 aa, chain - ## HITS:1 COG:SA2396 KEGG:ns NR:ns ## COG: SA2396 COG0531 # Protein_GI_number: 15928189 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 482 1 482 482 768 87.0 0 MASFFKNFTRKEDPTIYQSKDGHLKRTLRVKDFLALGVGTIVSTSIFTLPGVVAAEHAGP AVALSFLLAAIVAGLVAFSYAEMAAAMPFAGSAYSWINVLFGEFFGWVAGWALLAEYFIA VAFVASGFSANLRGLVYPLGITLPKSLSNPFGANGGIIDLVAAIVIILTALLLSRGMSEA ARIENILVILKVLAIVLFVIVGLTAIQASNYVPFIPEHKVTATGDFGGWQGIYAGVSMIF LAYIGFDSIAANSAEAINPQKTMPRGILGSLIIAIVLFVAVALVLVGMFHYSKYAGNAEP VGWALRQSGHGVVAAVVQSISVIGMFTALIGMMLAGSRLLYSFGRDGLLPSWLAKLNDKH LPNRALVILTIIGVLIGSMFPFAFLAQLISAGTLIAFMFVSIAMYSLRKREGKDLPVPAF KVPFFPVLPVITFLLVLLVFWGLSFEAKLYTLIWFLVGIVIYVFYGIKHSKKNDEDDYVV PKD >gi|312979657|gb|ACRM01000008.1| GENE 98 110434 - 112098 2443 554 aa, chain + ## HITS:1 COG:SA2008 KEGG:ns NR:ns ## COG: SA2008 COG0028 # Protein_GI_number: 15927787 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 1 554 1 554 554 926 85.0 0 MTKENYSAADMVIDTLKNNNVDYVFGIPGAKIDYLFNALEDDGPELIVTRHEQNAAMMAQ GIGRLTGKPGVALVTSGPGVSNLTTGLLTATSEGDPVLAIGGQVKRNDLLRLTHQAIDNA ALLKSSTKYSAEVQDPESLSEVMTNAIRTATSGKNGASFISIPQDVISSQVQNKAIDLPE KPHLGVPADEEVNEVLQAIKDAKFPVLLAGMRSSSEKETEAIRKFVEKTSLPVVETFQGA GVISRELEDHFFGRVGLFRNQVGDELLRKADLVVAIGYDPIEYEASNWNKELDTEIISID EVHAEITNYLRPKKEIVGNIAGTIQMMSEKVSEPIIDQKHLDDLEELRANIIEATGIKYE HEDGILHPVEIINTMQKTLTDDTTVTVDVGSHYIWMARKFRSYNPRHLLFSNGMQTLGVA LPWAIAAALVRPNTQVVSVAGDGGFLFSGQDLETAVRKKLNIIQLIWNDGKYNMVEFQEE MKYKRAAGVAFGPVDYVKYAESFGAKGIRVTSPEELEAAIKEGYETEGPVLIDIPVNYKD NIKLSTNMLPDSLN >gi|312979657|gb|ACRM01000008.1| GENE 99 112127 - 112831 1087 234 aa, chain + ## HITS:1 COG:SA2007 KEGG:ns NR:ns ## COG: SA2007 COG3527 # Protein_GI_number: 15927786 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Alpha-acetolactate decarboxylase # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 360 78.0 1e-99 MGHVLYQHGTLGTLMAGLLEGTATIDELLKHGDSGLATLTGSDGEVIFINGEAYHANEKK EFVKLKGDELTPFATITKFEADESYETSNKDSETVLNEVKEHMLSDNLFSAVKITGKFKK MHVRMMPKQEPPYTRLIDSARRQPEETQEDVNGTVIGFFTPELFHGIGSGGFHIHFANDD RNFGGHILDFEVDDVKVEIQNFETFEQHFPIDNKTFTNTEIDYADIDAEIREAE >gi|312979657|gb|ACRM01000008.1| GENE 100 112958 - 113131 194 57 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475498|ref|ZP_04060216.1| ## NR: gi|228475498|ref|ZP_04060216.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 57 1 57 57 86 100.0 4e-16 MQCPNCGQLYQQGDLFCGECGTKLDQITLSTTATSESLNLDSHVNKSINHSTSNSVN >gi|312979657|gb|ACRM01000008.1| GENE 101 113140 - 113352 111 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475599|ref|ZP_04060317.1| ## NR: gi|228475599|ref|ZP_04060317.1| hypothetical protein STAHO0001_0301 [Staphylococcus hominis SK119] # 15 70 1 56 56 97 98.0 3e-19 MILEYYVDYLEVVLVTYCKHCGSKFVPVQNVCTQYGTCVINEFKQSPSLRNNIKNTDNNK NFQRNRRICY >gi|312979657|gb|ACRM01000008.1| GENE 102 113455 - 114171 720 238 aa, chain + ## HITS:1 COG:SA2377 KEGG:ns NR:ns ## COG: SA2377 COG1636 # Protein_GI_number: 15928170 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 238 1 238 240 400 80.0 1e-111 MLNAEPMIKKMKNQKINYDRVLKKLISQWEREGVRPKILLHSCCAPCSTYTLEYLSQYAD IAIYFANPNIHPKNEYLRRAKVQAQFVKDFNEKTGHSVKYIEADYQPYEFMKMAKSRGLT DEPEGGKRCTACFEMRLELVAEAAVKYGYDYFGSALTLSPKKNAQLINELGMEVQRLYNT YYLPSDFKKNKGYERSIEMCNDYNIFRQCYCGCVFAAMEQGIDFKKINREAKTFLEQF >gi|312979657|gb|ACRM01000008.1| GENE 103 114225 - 114500 420 91 aa, chain - ## HITS:1 COG:no KEGG:SH0470 NR:ns ## KEGG: SH0470 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 2 91 8 97 97 98 66.0 8e-20 MTIENKQTESQTKDKHNIEDTKSSQEYDNSIGYNGEKKTALDLEIERELLEMMENKDPEP EKEKKGIKIAGLLSALVIAILAIVRFIHRML >gi|312979657|gb|ACRM01000008.1| GENE 104 114574 - 115644 1265 356 aa, chain - ## HITS:1 COG:SA2375 KEGG:ns NR:ns ## COG: SA2375 COG0167 # Protein_GI_number: 15928168 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 354 1 354 354 580 77.0 1e-165 MYKLIKPLLFKIEPEKAHGLTVDALKFTQKNAFLLPFVNKLFTYEHPSLSQNIKGITFKN PVGLAAGFDKSCEVPKALENAGFGALELGGITPKPQDGNPKPRMYRLLEDDALINRMGFN NIGMNKALWNLRRHAYAIPVGLNVGVNKTTPYEERYQDYIKVIDAFKADVSFFTVNISSP NTENLQSFHDKDEFSMLCHALTDYKAQHEVNIPIFLKLTSDLELEGFKTILPQITETFDG MILANTTRQRGGLSSPNKVEDGGLSGRPLFKRNLELVKWAYQQTNGEFLIIGTGGIFSAQ DTIQMMRNGASLVQIYSSLVIEGPGLTKKINRDIAKYLKANHYSNISEIIGLDARR >gi|312979657|gb|ACRM01000008.1| GENE 105 115870 - 116724 1170 284 aa, chain + ## HITS:1 COG:SA2374 KEGG:ns NR:ns ## COG: SA2374 COG3001 # Protein_GI_number: 15928167 # Func_class: G Carbohydrate transport and metabolism # Function: Fructosamine-3-kinase # Organism: Staphylococcus aureus N315 # 1 283 1 283 288 424 70.0 1e-118 MKSEWKNQLPLEGIQDISPVSGGDVNEAFKITTNDDIYFLLVQRNRKSSFYAAEIAGLEA FEKADITAPRVIENGEINGDAYLLLSYLEEGSKGSQKELGQLVAKMHSHQQSEGKFGFEL PYEGADVSFDNTWSESWSEIFVERRMDHLRDELLRKNLWNEEDNKVYEQVRSVMINELEN HNSKPSLLHGDLWGGNYMFLKDGRPALFDPAPLYGDREFDLGITTVFGGFTQEFYNEYEK HYPLGKGAEKRLEFYRLYLFMVHLVKFGGMYASSVNRSMDQILA >gi|312979657|gb|ACRM01000008.1| GENE 106 116831 - 116950 173 39 aa, chain + ## HITS:1 COG:no KEGG:SH0477 NR:ns ## KEGG: SH0477 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 39 87 125 125 77 87.0 2e-13 MHKVEALGGKVIDEPKTSQGYYGATFADPDGHKYNFLVC >gi|312979657|gb|ACRM01000008.1| GENE 107 117042 - 117911 641 289 aa, chain - ## HITS:1 COG:no KEGG:LSEI_0105 NR:ns ## KEGG: LSEI_0105 # Name: not_defined # Def: DMT family permease # Organism: L.casei # Pathway: not_defined # 1 281 1 280 288 245 51.0 1e-63 MNKVKKGYLFSIISVAIMSLTPILNKFSLTDLSPIQASFFNALFSTLILLITVLLDKSKI KIYHNKFIWLLGITNTIGILLQYVSLSLLDPVSVGLLGRFYIIFALFLSVLFLNETLCKN DTLPIIFAVIGSFLITHFSGDFNSILGVIATLSYTFFFALTNMLAKKTVKDIDSKTILLY NQATSTLLLGIILIVTNHLHTIHISIGLFSILLSALCSGVIGLLLFYEGLKYISFREANI IRTLNPIFVFIFSFPFFPLPLTPKFITGAILIIISIIYMNLYKDKKTSS >gi|312979657|gb|ACRM01000008.1| GENE 108 117904 - 118329 513 141 aa, chain - ## HITS:1 COG:no KEGG:LC705_00109 NR:ns ## KEGG: LC705_00109 # Name: not_defined # Def: ADP-ribose pyrophosphatase # Organism: L.rhamnosus_Lc705 # Pathway: not_defined # 6 141 2 137 137 126 45.0 3e-28 MIINHIKLQFNETVTKYDSVLIVLTYQGHLVFVKNKKRAWELTGGKVNHNETMNETAIRE AYEESGAVINESDIDYLGYYILPNGHTTTITKAEVSYFKDIPKYSETTERILTKEPLDKN LLSFQDGLYEEIFKYLGAYHE >gi|312979657|gb|ACRM01000008.1| GENE 109 118298 - 119065 582 255 aa, chain - ## HITS:1 COG:CAC3419 KEGG:ns NR:ns ## COG: CAC3419 COG0500 # Protein_GI_number: 15896660 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Clostridium acetobutylicum # 53 195 51 188 207 62 31.0 1e-09 MNKVSSKHHWENVWKFSNNKESYNFPPSRIERAKDKLKTFIYNEYYFSPCDKVLGAGCRD RAILFKLIKKYKIEGHGIDISENAKSIATEYMIKTGIKFKYVIGDVQNLPYPQNTFDTVI SLGVIEHFLNPDKVMNEMYRVLKTNGHLILMTPNKYSFGILDKKIKILLKVWKFGYQTEY SVNDLEKIANKYGFKVVSRKTELRKTFKNDSISFKLISSIDQILNVFNKNFGFYSYIYLI KEVDKNDYKSYQTSI >gi|312979657|gb|ACRM01000008.1| GENE 110 119457 - 119693 419 78 aa, chain - ## HITS:1 COG:SA2360 KEGG:ns NR:ns ## COG: SA2360 COG4224 # Protein_GI_number: 15928152 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 3 76 2 75 76 101 75.0 4e-22 MRELLERINQLANKEKVESLSVEEKQEQHQLRQEYLGMIRGQVLHTFSTMKVVDPLGQDV TPDKVYALREEYGNIQEN >gi|312979657|gb|ACRM01000008.1| GENE 111 119706 - 120650 1068 314 aa, chain - ## HITS:1 COG:RSp0908 KEGG:ns NR:ns ## COG: RSp0908 COG2141 # Protein_GI_number: 17549129 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Ralstonia solanacearum # 2 311 5 318 319 202 34.0 9e-52 MSKIENHEGFKRTFKNHKLTLGLSLPFDSKNKEHIDFNEQVKFAQQAERLGFTSLFVRDN PLYSPHLGPVTENYDPFVFLTYLSAFTSKIALGTSSIVATLRHPIHLAKSAASLDLISNQ RLLLGMATGDRAFEFPSFKVDESALTERYQTTVQSLRALWQSHSPQISNSIFELYEDSGL QVLPKHRTIPMFGTGYSRQSISWLQQHMDGWLFYAQPFQDQKKLVETWHSGTDRFKPFMN ILMIDLSQNPNETVKPIKGGFRTGRKNLLQILKAYESINTNHIILRFTNDDRDIEALIEE VGTYITPHFPAHTI >gi|312979657|gb|ACRM01000008.1| GENE 112 120808 - 121374 358 188 aa, chain - ## HITS:1 COG:SA2358 KEGG:ns NR:ns ## COG: SA2358 COG1309 # Protein_GI_number: 15928150 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 188 2 189 189 228 59.0 6e-60 MPSNKVDPRVIRTKQLLVEAFLNVSQEKEMTQITVKNITDRATVNRATFYAHFNDKYEIL DYSLSMTILKDIKETLSISETLNGQIISKLFVSIAYYLENVQNACKLNRETFCNHAHKCI NNELEAMFTLMLQHKYPEHDSSIIENSASFLAAGLCGLARHWLDTSELSAEQFIDQNLPF LLHHITNL >gi|312979657|gb|ACRM01000008.1| GENE 113 121664 - 122722 1489 352 aa, chain + ## HITS:1 COG:SA2357 KEGG:ns NR:ns ## COG: SA2357 COG3641 # Protein_GI_number: 15928149 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Staphylococcus aureus N315 # 3 352 2 351 351 395 76.0 1e-110 MTTELRKISVGDFIFRVLSGVAIGIVVGLVPNAILGEIFKALMHHHPIFATLLHVVQALQ FTVPALVGALIAIKFNMTPLAIAVVSSAAYVGSGAAQFKNGAWIIAGIGDLINTMITAAI AVLFILLIEKRVGSMALIVYPTIVGGLSATIGVLILPYVHTINIAIGNMINSFTELQPVL MCMLISMVFSFIIISPLSTVAIAIAIGITGLAAGSASIGISATEAVLLIGTSQVNRVAVP ISIFFGGVKMMMPNMVKYPIIMLPILITAAISGVVGSLIGIAGTKESAGFGFIGMIGPIS AFKFLHVDSAVMSILLIIIGFFVVPLVTAFILDVILRRVLKLFTNDIYKFMG >gi|312979657|gb|ACRM01000008.1| GENE 114 122834 - 124258 1548 474 aa, chain + ## HITS:1 COG:MA2391 KEGG:ns NR:ns ## COG: MA2391 COG2326 # Protein_GI_number: 20091222 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Methanosarcina acetivorans str.C2A # 5 468 86 567 569 311 40.0 1e-84 MAKKIEALALKTAELTRRTHELGIPVMILFEGVPASGKTRLSNELLLNLDAKYTQFIATQ SPKQDDLRYQFLQKYWNTLPKKGDINIYFRSWYSHYLDYRENKIKHDKYKNYDVLKQQIS SFENMLKQDHYEIIKFFIEINEEKRQEHIQQTKDNPLTRWKVQEYSNVLPTDIYLKDMRQ FIKNDKAWEIIDYTEREKAIETMYEHIIKRLETAIEKHEQKEEQRDGKFHSNFKTHLFDR KVDKVKKDEYKQLIEELQNRMREIQFALYDRKIPLILVFEGMDAAGKGGNIKRIREKLDP TGYRVNGISAPTDVELKHHYLWRFAKEMPRTGHIELFDRSWYGRVLVERVEGFATIDEWQ RAYDEINAFEKMWTDEGAIILKFFLTLDKEEQLKRFKVRQENVNKQWKITDEDWRNREKW DLYVESSHDMVEKTNTSYAPWLVVPADHKKTSRIEILKYIIRNCEKVLWGVKDY >gi|312979657|gb|ACRM01000008.1| GENE 115 124684 - 125412 999 242 aa, chain + ## HITS:1 COG:no KEGG:SH0486 NR:ns ## KEGG: SH0486 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 242 1 238 238 234 72.0 2e-60 MKKTVIASSLAVTLGLTGYALTNDHSAHASEQTTNYSHLADLAQNNPSELNAHPVQAGAY NISFVQDGFKYTFTSNGNTWSWNYTYTGGADTAQSTTDYTDSYNQASTQSVSANNQASTS NVKAVSAPVQKTSSYSNYSARTTSYSAPKTTSYSTASTGGSVKAQFLANGGTEAAWNAIV MPESGGNPNAVNPIGYRGLGQTKEAWGTGSVATQTQGMVNYAKSRYGSWDAAIAFRQGHG WW >gi|312979657|gb|ACRM01000008.1| GENE 116 125602 - 126099 277 165 aa, chain + ## HITS:1 COG:no KEGG:SH0487 NR:ns ## KEGG: SH0487 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: Carotenoid biosynthesis [PATH:sha00906] # 1 159 1 159 171 173 53.0 2e-42 MSINKIVKLGLYHSVYWSVTQMSLSHLFTKVPSSFFDTYHHWFKTFPFEQGGQLWNRLFL INRWKGYIPEGECLNKNVYNKHVLKPLTQESVYKMIIEMRRAELVHWLSILPVIVFVKAP KCIKTINILYALLANVPIILTQRYNRPRLERYYQLKYKRGIDDGE >gi|312979657|gb|ACRM01000008.1| GENE 117 126089 - 127597 1466 502 aa, chain + ## HITS:1 COG:SA2351 KEGG:ns NR:ns ## COG: SA2351 COG1233 # Protein_GI_number: 15928143 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phytoene dehydrogenase and related proteins # Organism: Staphylococcus aureus N315 # 17 493 16 492 497 694 71.0 0 MANKTIVVIGGGLGGISAAIRLAQSGYHVDLFEKNTHIGGKVNRLETEGFGFDLGPSILT MPHIFENLFYHSNKEMADYVTIERLPLQWRSFFTNGKVIDLYEDLEQTENKNSHLTDYDI QQLSHFLNYAEKIHRFTEDGYFALGLDTVTDILKYQGPFKSLKGVDYFSTMQQAINRYIN KPELQDMLGYFIKYVGSSSYDAPAVLTMLVHMQYEQGLWYVKGGIHHLANALERLAEEAG VQIHKGIDVTSIDTYFNQVIGVRLDNGQHIHADYIVSNREVIPTYRDLLHFSDKKLEKLE KTFEPASSGYVMHLGVNTSYPQLAHHNFLFSNNSKQNYHEVFHEKVLPQDPTIYLVNSNK TDKAQAPKGYENLKVLPHIPYIQDQPFTKEQYDEFRERVLDKLEHMGLTNLREHIIYEDV WTPHDIESNYASNRGAIYGVVADKKKNKGFKFPKQSQYFDNLFFVGGSVNPGGGMPMVTL SGQQVADKINAIEETKLLKYQP >gi|312979657|gb|ACRM01000008.1| GENE 118 127612 - 128733 886 373 aa, chain + ## HITS:1 COG:SA2350 KEGG:ns NR:ns ## COG: SA2350 COG0463 # Protein_GI_number: 15928142 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 1 373 1 372 375 338 49.0 8e-93 MKRLAKLLYPLLGASIASGYFMYNRQRLLQYNKKTTKKNYPSISIIIPARDEEVRLPRLL TSLNQQSISPEIIVMNDGSKDNTRVVALSYGAKVIDVVEGDDARWYGKSFACYQGVQYAT SDIFIFIDADVQLLDSHALESILQAYEKQSYRGLLSIQPYHLVKKAYEQFSALFNLMTVV GMNQFSSLSHHKQTLAFGPVTVMKKEDYVLTQGHKNAECHIIEGFALAQAFSKYNLPVSC YEGKGFVGFRMYEEGAKSLIQGWTKHFATGASGTEGTIMLMIMTWMMGITFSHTLLLLSF ITKTVSKKWGGLSYFLYLIQFIRLHKRVGSFSILFLIMNPLLFVVFVFVFINSYCQTHFT KNVRWKGRTFKIN >gi|312979657|gb|ACRM01000008.1| GENE 119 128763 - 129629 809 288 aa, chain + ## HITS:1 COG:SA2349 KEGG:ns NR:ns ## COG: SA2349 COG1562 # Protein_GI_number: 15928141 # Func_class: I Lipid transport and metabolism # Function: Phytoene/squalene synthetase # Organism: Staphylococcus aureus N315 # 1 284 1 284 287 283 52.0 3e-76 MSFVEESYQYCHKIMKDYSKSFSFAFDLLPERQRRAIWAIYSVCRIIDDSIDIHQDVDYL YKIKQDVKRIERQSDIQKSFESDQHIMTAFADTAQTFPMNYDALYELIDTVMNDQSFTMF DTDDALMEYCYGVAGTVGVLLIPVLSTSPTKETYENGKQLGEALQLTNILRDVGEDYHNG RVYLSIERLEQCGVSMDDEMNSGPSERYKKLWEYYATIAENDYEAVLNHLDVYDKEARFI IELAARVYKSILDETRKANYTFSQRVYVSKWKKNHIYRELKKEYKVKE >gi|312979657|gb|ACRM01000008.1| GENE 120 129641 - 131146 1508 501 aa, chain + ## HITS:1 COG:SA2348 KEGG:ns NR:ns ## COG: SA2348 COG1233 # Protein_GI_number: 15928140 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Phytoene dehydrogenase and related proteins # Organism: Staphylococcus aureus N315 # 1 498 1 499 502 739 69.0 0 MDIAVIGAGITGLASAARLASQGHHVTIFEKNGKVGGRMNQLKKDGFTFDLGPTIVMVPD VYKAIFEECGKHFENYIDMHQLSHIFDIYFSDKDKVSVSTDLPQLSQTLEAIEPGSTHGF MSFLTDVYKRYDIARKYFLERTFRKPSEFYNPIALYRGMKLRTLGKANHLIDSYVKNEKI RKLLAFQTLYIGIDPKQGPSIYSIIPMIEMMHGVYYIKGGMYSFAKGLHRLTQDLGVSIE LNSDVQEIIIDPKFKRADGLRVNGDIRRFDKVLCTADFPYAAQHLMPSHSPLKKYTPAKI DKMDYSCSAFLIYAGINRDLKDKVHLHNVIFAEDFRGNIDDIFEGRLPKDPSIYLYFPSV EDEKLAPEGKTSMYILMPVPELKTGQIDWNNPAIIEQVKNEIYKKTETIESLKGLRNDIV SETIFTPLDFETHYNAKFGTAFGLMPTLAQSNYYRPPNVSRDYKDLYFAGASTHPGAGVP IVLTSAKITAEAMLEDIKNMK >gi|312979657|gb|ACRM01000008.1| GENE 121 131393 - 132562 1469 389 aa, chain + ## HITS:1 COG:SA2347 KEGG:ns NR:ns ## COG: SA2347 COG0436 # Protein_GI_number: 15928139 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Staphylococcus aureus N315 # 2 385 1 384 384 657 81.0 0 MVISKRLAAIPDSYFGKTMGRRVEHGPLPLINMAVGIPDGETPEGIIEHFSEAIRIPENQ KYGAFHGKESFKEAIVNFYQRQYNVTLDKEDEVCILYGTKNGLVALPTCVVNPGENVLLP DPGYTDYLAGVMLADANPVPLNLDPPDYLPNWDNVDKRVLDNTTLVYLTYPNNPTGSTAT KEVFDEAIERFKGTKTKIVHDFAYSAFGFDAKNPSILASEHGKDVAIEIFSLSKGYNMSG FRVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAATYALNHYDEFLEEQNETFKRRRDKF EAKLSEAHLPFVHSKGGIYSWLRTPPDYDSETFEQYLLKEKSILVAPGIPFGENGKHYVR ISLALDDKWLEEAASRLMDLADMYKAKHS >gi|312979657|gb|ACRM01000008.1| GENE 122 132590 - 133588 1251 332 aa, chain + ## HITS:1 COG:SA2346 KEGG:ns NR:ns ## COG: SA2346 COG1052 # Protein_GI_number: 15928138 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 332 1 332 332 477 71.0 1e-134 MTKIKIMSVRDEDIPYINEWAKQNNVDVDLTKEMLTETTVDTVKGFDGLSLSQQHPISEE VFAKLKQYGIKQIAQRSAGFDTYDLDLATKYDIIISNVPSYSPSSIAEFAVTQAINIVRY QKRIQHKVRNYDFRWEPSILSQSIRDLTVAVIGTGRIGSIVAEIFGKGYNSKVVAYDPFP NTALAKFVDYKDTLEAAIKEADIVTVHIPATKYNHHLFNNVVFSNFKKGAVFVNAARGSI VDTQALLSVIDSGRIKGAALDTYEYERGLFPGDYRGKEIDDVLLKQLIKREDIILTPHIA FYTEAAVKNLIVDALDATMDVLTSGTTKLRVN >gi|312979657|gb|ACRM01000008.1| GENE 123 133626 - 133835 396 69 aa, chain - ## HITS:1 COG:SA2345 KEGG:ns NR:ns ## COG: SA2345 COG2608 # Protein_GI_number: 15928137 # Func_class: P Inorganic ion transport and metabolism # Function: Copper chaperone # Organism: Staphylococcus aureus N315 # 1 67 1 67 68 62 49.0 2e-10 MINKVIKVDGMSCDHCKNTIESALAKINGVRTAEVDLDKNEVRVDYNDELVSTKDLHDTI EDQGYDVKE >gi|312979657|gb|ACRM01000008.1| GENE 124 133924 - 136311 3089 795 aa, chain - ## HITS:1 COG:SA2344 KEGG:ns NR:ns ## COG: SA2344 COG2217 # Protein_GI_number: 15928136 # Func_class: P Inorganic ion transport and metabolism # Function: Cation transport ATPase # Organism: Staphylococcus aureus N315 # 1 795 1 795 802 1103 70.0 0 MTQNHQITLNIIGMTCAACSNRIEKRLNKIDGVHAQVNLATEKATIDYPNDQYEVSDFIK TIQKLGYDVETDKSELDVIGMTCAACSNRIEKVLNKTTGVKQATVNLTTEQATIDYYPGQ TDVDTLIGRIQHLGYDAKPKQSKKEQASRKVQELKRKRNKLIISAILAFPLLLTMLVHLF NVPLPEIFMNPWFQFILATPIQFIIGWQFYVGAYKNLRNGGANMDVLVALGTSAAYFYSI YEMSKWLLDSNAQPHLYFETSAVLITLILFGKYLEARAKSQTTHALNQLLNLQAKEARLI KDDGTETMVPLQNVQVGDTLLVKPGEKIPVDAKVIKGTTTVDESMLTGESMPIDKTVDNE VIGATLNKNGVITVQATKVGQDTALSNIIKVVEEAQSSKAPIQRLADMISGYFVPIVIGI AVLVFIIWIIFVHPGQFEDALVAMISVLVIACPCALGLATPTSIMVGTGRAAEEGILFKG GEYVERTHQIDTVVFDKTGTLTHGTPEVTYFKGDDTLLRYVASAENNSEHPLATAIVKYA KTKQLTLTNIEHYETLPGHGIKAIINNKTLFIGNRSLMSNHHIDTTSLLDEITQIEQKGQ TVMLIAYDQILRGYIAVADTVKSEAKVAVQELKDMNLRTVMITGDNHSTAQAIANEVGID HVIANVLPEDKAKHVAHFQDKGENVAMVGDGINDAPALVQADIGIAMGTGTEVAIEAADI TILGGDIALVPKAIHTSHKTIRNIKQNLFWAFGYNAAGIPIAAMGLLAPWIAGAAMALSS VSVVTNALRLKRMKL >gi|312979657|gb|ACRM01000008.1| GENE 125 136446 - 136652 310 68 aa, chain - ## HITS:1 COG:no KEGG:SH0497 NR:ns ## KEGG: SH0497 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 68 1 68 68 95 70.0 5e-19 MKGILKGIITILIILGIVKTVQDHDLMNEANQYYNEAKSGELVRSITHPNFNNFKDLDLS HFKPSDFF >gi|312979657|gb|ACRM01000008.1| GENE 126 136849 - 137718 191 289 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 42 287 1 242 242 78 30 2e-13 MDLLDFHKKIKGYTQEKQPGSEKDMDPRPIAEMEEYKAGGKLKGKVALITGGDSGIGRSV AILYAKEGADVAIGYYNEHEDAEDTINRLKEIGVKAKAYSHDLKDADQSKKLVETVVNDF GGLNILVNNGGVQFPNEDFLDIKPEHFNETFKTNIFGMFFLTQAAVPHLSKGDAIVNTTS VTAYRGSGHLIDYSATKGAIVSFTRSIATSLMEKGIRVNGVAPGPIYTPLIPSTFDEDKV ENQGGDTPMGRRGQPAELAPAYVFLASYADSSYITGQIIHVNGGDYITS >gi|312979657|gb|ACRM01000008.1| GENE 127 137813 - 138406 741 197 aa, chain + ## HITS:1 COG:SA2342 KEGG:ns NR:ns ## COG: SA2342 COG0110 # Protein_GI_number: 15928134 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Staphylococcus aureus N315 # 1 187 1 187 199 268 65.0 4e-72 MTEKEKMLAHEWYDANFDKELRMGRQRAKDLCFEYNHTRPSDIEKRQAILKELLGYEAKQ LSISSPFDTDYGWNIKVGENVFINSNSYLMDGGGITIGDNVFIGPSCGLYTAHHPLNYQD RNKGWELAKPIHIGSNIWFGASVTVTPGVSIGDGSVIAAGSVVTNDIPPNSLAAGVPAKV IRTIDQNEMINMPNHFE >gi|312979657|gb|ACRM01000008.1| GENE 128 138632 - 141139 2069 835 aa, chain + ## HITS:1 COG:L146188 KEGG:ns NR:ns ## COG: L146188 COG1887 # Protein_GI_number: 15672903 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Lactococcus lactis # 37 614 10 588 807 412 39.0 1e-114 MTLKTCLTNQLRRKLNFLFKPIQRKNKSAYTSKVMTYAKYYKKNNVKEYQILYQVRDGKS ITDSPYAIFKSLIQQPRYRKYKHIWVVDHHETLLFYKARFKYYKNVEFVIKESREYLKAL TESKYLINNSTFPSYFIKKPKQMYINTWHGTPLKYMGLDIENSLYGSQNIIKNFLSSDYL ISPNHHTTTIFKRAFRLENIYGGEFLEIGYPRIDLTLNSNRKDMISELNHYLHISKEQSI LLYCPTWRGEDVNAPEASLNHIVEEVEKLKHHLDYQVLVKVHPYLYKDALKIKRLKPYLI PDYFDTNEILAIVDLMITDYSSIFFDYLVTNKPIVFYTPDLDEYQSSRGMYIANRDLPGP VVHHIEDVITAIKQKVYDDDSVKKKYQYFKRQYTYLDDGTVTETLINILFEGKRKRPKRK ICAKKRVLIYPGGMKNNGITTSIINLLENVDYEKYDITLFTNKSKNLEVLNNLNRINKNV RIILRVPPLAASLKEMYSIDFVRQRGLKSTLEHLIYPKKVYEREMRKVFGHSQFDYAIDF SGYSMFWANLILATKVKRKLIYLHSDIKADMERKVNGVKIHYQNLKGVRSLYSQFDQLVC VSDASKDQNKQKINDKSLNKKFVTSRNTINLNKINQLKLDDSEKFEKQHQSVLVRINNRD ISSVPFKEDDFKIVTAGRLSPEKGFDLLIDAFSKVHVSHPHTKLYIMGEGPIRVQLEQQI KRLKLEKHVFLLGQRKNPYYIMKQADVFCLTSHYEGQSMVLLEALTLKVHIIASDIIANR YVLGNGKYGTLVSHDIDDITVALEQCIQKRPSQYEVFNAQEYNQLALKEFYKLLK >gi|312979657|gb|ACRM01000008.1| GENE 129 141183 - 142133 870 316 aa, chain - ## HITS:1 COG:SA0123 KEGG:ns NR:ns ## COG: SA0123 COG0451 # Protein_GI_number: 15925832 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 2 312 3 311 323 295 49.0 7e-80 MKVLITGGAGFIGSHVAEYFMKHDTEVHIIDNLSSGFLKNIPFVNNEHIYIKDITDFEFV TQLIQKEQFDFVIHLAAMVSVVETIEKPELSNRINIDATVNILEAIRIYNPNIKKVIFAS SAAIYGHLPDLPKSVEQSKPFPLSPYAIQKYAGEQYTKIYNHLYQIPCTCLRFFNIYGPR QNPTSDYSGVISIMNTKFLNHSTFTFYGDGEQTRDFVYIDDLINALSIVLNTTLTDGFIY NVGTGIQTNLKAVFQSFEHGFDYHIPYQFEAPRLGDIKHSCADITPLKALGYNPKYSIEE GITAYLTYNKHNNITI >gi|312979657|gb|ACRM01000008.1| GENE 130 142403 - 143947 1918 514 aa, chain + ## HITS:1 COG:SA2341 KEGG:ns NR:ns ## COG: SA2341 COG1012 # Protein_GI_number: 15928133 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 514 1 514 514 863 81.0 0 MVVPFKNEPGIDFSVQENVERFQKTLEKVKHSLGQTLPIVIDGEHIIKDDTFDSINPANT SELVAKVSKATKDDVDNAFESSNKAYDAWRKWSHKDRAELMLRVAAIIRRRKEEISAVMV YEAGKPWDEAVGDAAEGIDFIEYYARSMMELADGKPVLDREGEHNQYFYKPIGTGVTIPP WNFPFAIMVGTTLAPVVAGNTVLLKPAEDTVLTAYKLIEILEEAGLPKGVVNFVPGDPKD IGDYLVDSVHTHFVTFTGSRATGTRIYERSAVVQEGQTFLKRVIAEMGGKDAIVVDEGVD TDLAAHSIVTSAFGFSGQKCSACSRAIVHSAVYDEVLEKAIELTKDLTVGNTVDNTFMGP VINKKQFDKIKKYIEIGSKEGKIEIGGEADDSTGYFIHPTIISGLTSSDQVMQEEIFGPV VGFTKFDNFNEAIDIANDTDYGLTGAVITNNREHWIQAVNEFDVGNLYLNRGCTAAVVGY HPFGGFKMSGTDAKTGSPDYLLNFLEQKVVSEMF >gi|312979657|gb|ACRM01000008.1| GENE 131 144163 - 144390 334 75 aa, chain + ## HITS:1 COG:SA2338 KEGG:ns NR:ns ## COG: SA2338 COG1918 # Protein_GI_number: 15928130 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein A # Organism: Staphylococcus aureus N315 # 1 75 1 75 75 78 53.0 3e-15 MINVSTASKDKKYVVKQIDIQNKNMLYRLGAFGLNVGSKISIKQKCLLNGPSVVEINGQC VSIRQRDARLIMLEE >gi|312979657|gb|ACRM01000008.1| GENE 132 144395 - 146389 2161 664 aa, chain + ## HITS:1 COG:SA2337 KEGG:ns NR:ns ## COG: SA2337 COG0370 # Protein_GI_number: 15928129 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+ transport system protein B # Organism: Staphylococcus aureus N315 # 3 664 2 664 664 968 71.0 0 MHESFCILGNPNVGKTSLFNALTGSYEYIGNWSGVTVEKKVGQLKKDIGNLIDLPGIYDL SPISKDETVVTDYLMTNTFTGMINIIDASQLKRNLQLTIQLMELNEPIIIGLNMVDVATQ RGIKIKYEDLMRKLKVPVFPIVARKGKGTEELLNELSFLNPKERRNFKISYGKESEDAIK QMTSIIQAHTEYPSKRLRFIAIQYLLDNPEIERELPSVISEQIEPIKEKLSQHLDVSIRQ HIEIIRNQYIDRLLDGVVEYPNEEQQFLTEKLDKIIMNRYLGIPIFLFIMWLIFQTTFTW IGTPLSDQLDAFFSGPLTDWLKAGMHYIHVAPFLQNLITDGIVAGVGSVLVFVPQIIVLF FFISLLEDSGYMARIAVLMDRTMESIGLSGKSFIPMIIGFGCNVPSIMATRSIENEKERL ITILIAPFMSCSARLPVYAIFVGVFFEKYQSLVVLSLYVLGIVVALIVSTLLNKFILKSE NSVFIVELPTYRVPSIKTLWRSTWEKAKGFVKKAGTFIFGGSVVIWALSYIGPHGVNVQI DESFMHSIGEFFGHLIAPLGFGSWQAGATLIPGFLAKEVIVSSMAILYSSSEGGLVNVIQ QQFTPLSAYAFMIFILLYVPCISTVATIRKETTSWKWTLTALIYPIFTAYILTFAFYQIT KLLI >gi|312979657|gb|ACRM01000008.1| GENE 133 146401 - 146589 178 62 aa, chain + ## HITS:1 COG:no KEGG:SERP2125 NR:ns ## KEGG: SERP2125 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 60 1 60 60 67 55.0 1e-10 MTLLINVIIFVAIFGYAAYTLYKFFNRSTQGKCGGCDTECSCDINASSQLNELKLNNIKN NN >gi|312979657|gb|ACRM01000008.1| GENE 134 146655 - 147206 595 183 aa, chain - ## HITS:1 COG:SA2340 KEGG:ns NR:ns ## COG: SA2340 COG1309 # Protein_GI_number: 15928132 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 179 1 180 182 162 51.0 3e-40 MNDKDLRVIKTKKALTSSLYALLEIEPFSSITVHKICENAGIHRTTFYKHFYDKYELLVY LLEVIGKNYFAIDIKERINRPFQVLSNSLNRETLSRIEHMQEEDNEYNKVRNQFLIDIIK NDVYENMNRIALEETIPKSLVFYVFGSIIGGFLEWQKNEETTLTPKEMDDVFHKLVNIKT INY >gi|312979657|gb|ACRM01000008.1| GENE 135 147533 - 147997 669 154 aa, chain + ## HITS:1 COG:no KEGG:SH0504 NR:ns ## KEGG: SH0504 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 154 1 154 156 233 90.0 1e-60 MKGSKRLNQIKEDNKKQLKKLFKYDKNNALSFSKPDREKVQDKFGVYVIFDKKTPIFVGQ TGGYSTGYQPITKDLFNKMGQYNLKSGVGTTKFKKGLAQQKGLNEDDIKSITAEDYGLKF QYVNVKDEPAFINILEILALEYAKDKGYELYNFN >gi|312979657|gb|ACRM01000008.1| GENE 136 148150 - 148671 648 173 aa, chain + ## HITS:1 COG:SA2335 KEGG:ns NR:ns ## COG: SA2335 COG0350 # Protein_GI_number: 15928126 # Func_class: L Replication, recombination and repair # Function: Methylated DNA-protein cysteine methyltransferase # Organism: Staphylococcus aureus N315 # 1 173 1 173 173 211 59.0 8e-55 MFYSMLYHSPVGNLEIVTDGEVVTQLEYLYQYTHLRFPTNHELYILKKVKRWLDDYFLGN NPEIDFPLQPHGTSFQQEVWAYLNTTPYGELTTYGTIAKHIGQVLNKPKMSAQAVGGAVG KNPISIIIPCHRVVGKDGSLTGYGGTIDNKIKLLEIENVNMSQLYRPLYTTKP >gi|312979657|gb|ACRM01000008.1| GENE 137 148792 - 149958 1357 388 aa, chain - ## HITS:1 COG:SA2334 KEGG:ns NR:ns ## COG: SA2334 COG3425 # Protein_GI_number: 15928125 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxy-3-methylglutaryl CoA synthase # Organism: Staphylococcus aureus N315 # 1 388 1 388 388 602 81.0 1e-172 MNIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTQMAVSPVSQDIVSMGANAAK DIITEDDKKHIGMVIVATESAIDNAKAAAVQIHHLLNIQPFARCFEMKEACYAATPAIQL AKDYLANRPNEKVLVIASDTARYGIESGGEPTQGAGAVAMLISHQPRILQLNNDAVAYTA DVYDFWRPTGYKYPLVAGALSKDAYIESFQESWKEYARREDKSLSDFESLCFHVPFTKMG KKALDSIINDTDETTQSRLTSGYEDAVYYNRHVGNIYTGSLYLSLISLLENRTLTPGQTI GLFSYGSGSVGEFFSATVVEGFEQHLDKKAHQALLNERQEVSVKEYESFFRRFDDLSFNH EIENVENDKHIFYLENIEDDIRYYHSPE >gi|312979657|gb|ACRM01000008.1| GENE 138 150071 - 151225 1513 384 aa, chain + ## HITS:1 COG:lin1453 KEGG:ns NR:ns ## COG: lin1453 COG0183 # Protein_GI_number: 16800521 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Listeria innocua # 1 368 1 375 389 389 56.0 1e-108 MKQIAIVSAKRTPIGKYKGKLRNYSAVELGTTALKGAIESIDIDPSLIEQVIFGNVLQSG IGQNSARQIAIKSGIPDTTPAMTINEVCGSGLKAIILGKQLIQLGEAKVVAVGGVESMTN APKLILKDGEDPVESFMHDGLTDAFHYVPMGVTAENIAEKYHVTREMQDEFANHSHAKAA KAVEEGKFDNEIIKMTDAEGNEMTSDEGIRSNSSVEKLSTLKTIFKENGTVTGGNASSIN DGSSALILMEATFAKEHGFEILGIVGDYAEVGCDPQYMGYAPFYAVKKLLEKTHQHINDI DIIEMTEAFAAQSIPVKDHLKIPDSILNIYGGAIALGHPIGASGARLVTTLVNALEQEHQ HTGIATACIGGGLGIALMIEKGVH >gi|312979657|gb|ACRM01000008.1| GENE 139 151227 - 152504 1656 425 aa, chain + ## HITS:1 COG:SA2333 KEGG:ns NR:ns ## COG: SA2333 COG1257 # Protein_GI_number: 15928124 # Func_class: I Lipid transport and metabolism # Function: Hydroxymethylglutaryl-CoA reductase # Organism: Staphylococcus aureus N315 # 1 424 1 424 425 652 80.0 0 MKSLDKNFRHLSREDKLKQLVDYGWLDKTNYQTLLSNPVIDEEVANSLIENVIGQGTLPV GLLPKIIVDEKEYVVPMMVEEPSVVAAASYGAKLVNQTGGFKTIKSERLMIGQIVFDDVK DTEDLTHRIQKRESQIKRIADEAYPSIIHRGGGYRGIDIDAFPNEQLLSLKVFVDTKDAM GANMLNTILEAVTAYLKNELIDQEILMSILSNHATSSVVRVEGEIDINDLNRGDYSGEEV AKRMERASVLAQVDIHRAATHNKGVMNGIHAVVLATGNDTRGAEASAHAYAARDGQYRGI ATWKYDEARGRLVGTIEVPMTLAIVGGGTKVLPVAKASLNLLNVESARELGHVVAAVGLA QNFSACRALVSEGIQKGHMSLQYKSLAIVVGAKGEEISKVAEQLKQEPKANTEAAERILK SIRQS >gi|312979657|gb|ACRM01000008.1| GENE 140 152578 - 153012 565 144 aa, chain - ## HITS:1 COG:SA2332 KEGG:ns NR:ns ## COG: SA2332 COG3942 # Protein_GI_number: 15928123 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 1 144 1 143 143 159 61.0 1e-39 MKIKTFILRLILATTIIFTGTYTYQNVEHTHTSEAAGYNYYNKYQCTWWAYQRRVQLGKP VSNQWGNAKNWYYRAQRAGYRTGHKPKRYAIMQSTAGYYGHVAIVERVYSNGKILVSEYN YNRPLAYSTRYISASAARNYNYIY >gi|312979657|gb|ACRM01000008.1| GENE 141 153230 - 153427 154 65 aa, chain - ## HITS:1 COG:no KEGG:SERP2119 NR:ns ## KEGG: SERP2119 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 65 7 71 71 104 81.0 8e-22 MQNFIGDDTPLGELVNWINQDNTFPKDVKSQNEILLYFRTNPCLENIPVTSVKRALAVFN QFTDV >gi|312979657|gb|ACRM01000008.1| GENE 142 153670 - 154554 300 294 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|30995401|ref|NP_438934.2| transcriptional regulator [Haemophilus influenzae Rd KW20] # 1 266 2 272 301 120 25 5e-26 MDIKHMKYFMEVVNQGGMTNASKSLYIAQPTISKAIKDIEKELDMPLFDRQKRYLVLTDA GKVFYKKCEEILALYDNIPNEINGLLGLETGHINIGMSAVMDMQQFINILAEFHKLYPNV TYSLNESGGKSIENRLINDQIDIGITTIPIDENTFDYVSLYSEDLRLIVSEEHQLAKRSS VTMADLKNEDFILFNEDFYLNDKIIAAAKNAGFIPNTVSNVSQWNFIEYLVIARLGVSIL PEHIAKMLKDEIKSIKIEDSGMSWELGAIWKKDKLLSYATSKWIKFMTERLENK >gi|312979657|gb|ACRM01000008.1| GENE 143 154757 - 155146 390 129 aa, chain + ## HITS:1 COG:SA2329 KEGG:ns NR:ns ## COG: SA2329 COG1380 # Protein_GI_number: 15928120 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Staphylococcus aureus N315 # 21 125 21 125 131 103 63.0 9e-23 MKKALNIIEIILQIVLVVAISIIGSLLQKWLHIPLAGSIIGMILFYILLHFKIIRVEWVS KGADFLLTTMVFFFIPSVVGIMDIVSNITTSYIIFFLLIIIGTSCVALVSGFIAETMSKK KPHTKKGNH >gi|312979657|gb|ACRM01000008.1| GENE 144 155149 - 155835 679 228 aa, chain + ## HITS:1 COG:SA2328 KEGG:ns NR:ns ## COG: SA2328 COG1346 # Protein_GI_number: 15928119 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Staphylococcus aureus N315 # 2 228 3 229 229 290 73.0 1e-78 MDILKGVLMILLTVVMYKLAQILQRKYNNPLLNPALIGSLGIIIVLLLTRQNYHDYMIGG QWINHLLNATVVCLAYPLYKNKDKIVENIGVIFSSVMAGVILNFVLVFSSLKLLGYSEET IVTILPRSITAAVGIEVSQELGGTDTITVLFIITTGLIGSMMGSMLLKVGQFKTSIARGL TYGNASHAFGTAKALEHDIESGAFSSIGMILTAVISSILIPIMIKLFY >gi|312979657|gb|ACRM01000008.1| GENE 145 155886 - 157625 2479 579 aa, chain + ## HITS:1 COG:SA2327 KEGG:ns NR:ns ## COG: SA2327 COG0028 # Protein_GI_number: 15928118 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 1 579 1 579 579 965 80.0 0 MAKIKANEALVKALQAWDIDHLWGIPGDSVDAVVDNLRTVRDTFKFYHVRHEEVASLSAA AYTKLTGKIGVALSIGGPGIVHLLNGMYDAKMDRVPQLIITGQTNSTLLGTKFFQETNIS KMVDDVAVFHHQVQKGDDLFEITNEAIRTAYEKNGVAVIICPNDLLTQKIKDTTNRPVDT SRPVLPTPSYRSIKKAAKLINKSKKPVMLVGVGAKNASTELQDFIEAAKIPVIHTLPAKT VLPDSHPYSVGNLGKIGTKTSYQTIQDADLLIMAGTNFPYANYLPKKNIKAIQIDTNPNV IGERFDINVGIVGDVKLAFHQLTEAIKPVPHRSFLDKTLKRKAVWDKWMEKDMNNTSAPI RPERLMKAINDYSKDDAVYSIDVGTSTVWGTRYLDLNVNNKFIISAWLGTMGCGLPGALA SNIAYPGRQAIAITGDGAFQMVMQDFATAVQYDLPMTVFVLNNKQLSFIKYEQQAAGELE YAIDFSDMDHAKFAEAAGGKGYVLKDPNRIDEIVEAALNENVPTVVDVHVDPNAAPLPGQ IVNEEAYGYGKWAYRSITEDKEFDFDKVPPISVAAKRFL >gi|312979657|gb|ACRM01000008.1| GENE 146 157831 - 157902 62 23 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGLFGHAFLMRKKDILKGLNQNV >gi|312979657|gb|ACRM01000008.1| GENE 147 157895 - 159922 2551 675 aa, chain + ## HITS:1 COG:SA0183_1 KEGG:ns NR:ns ## COG: SA0183_1 COG1263 # Protein_GI_number: 15925893 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 1 428 1 428 428 733 87.0 0 MFKKLFGQLQRIGKALMLPVAILPAAGLLLAIGTAFQGEALQQYLPFIKNGVIQNIANMM TGAGGIIFDNLPIIFALGVAIELAGGDGVAAIAAFVGFIIMNKTMGAFLNVTPAQLEDPS KGFANVLGIPTLQTGVFGGIIIGALAAWCYNKFYNISLPSYLGFFAGKRFVPIMMATTSF ILAFPMAWIWPSIQNGLNAFSTGLLDSNTGLAVFLFGFIKRLLIPFGLHHIFHAPFWFEF GSWKNAAGEIIRGDQRIFIEQIREGVHLTSGKFMQGEFPVMMFGLPAAALAIYQTAKPEN KKVVGGLMLSAALTSFLTGITEPLEFSFLFVAPLLFFIHAVLDGLSFLTLYLLHLHLGYT FSGGFIDFVLLGILPNKTPWWLVIPVGLVYAVIYYVVFRFLIVKFNFKTPGREDKQASVA NTSASKLPFDVLDAMGGKENIKHLDACITRLRVEVNDKSKVDVEGLKALGASGVLEVGNN MQAIFGPKSDQIKHDMARIMNGDITKPSETTVTEDTSDEPVQLEEVKETDIYAPGTGHII PLSEVPDKVFSEKMMGDGIGFVPEKGEIVAPFDGTVKTIFPTKHAIGLESDTGIEVLIHI GIDTVKLNGEGFESLVDVNEPVTQGQPLMKINLAYLKEHAPSVVTPVIITNQGDKTLTFD DVDSVDAGKRIMTIK >gi|312979657|gb|ACRM01000008.1| GENE 148 160087 - 161139 1063 350 aa, chain - ## HITS:1 COG:SP2055 KEGG:ns NR:ns ## COG: SP2055 COG1063 # Protein_GI_number: 15901875 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Streptococcus pneumoniae TIGR4 # 1 350 1 351 352 522 71.0 1e-148 MKAYIYEKPGVAKLVDKEKPVVTESTDAIIRMVKTTICGTDLHIIKGDTPEVPQYTTLGH EGIGIVESVGSNVNNFKVGDKVIVSCISSCGKCYYCKKGIYAHCENGGGWILGHLVDGTQ AEYVKVPFADNSLYHAPTSLSDEALVMLSDILPTGYEIGVLKGKVKPGSTVAIVGAGPVG LASLLTAQFYSPSKIIMIDLDDHRLATAKKFGATHTINSSHVNEVIQQIKDINHRGVDVA IEAVGIPATFDLCQKLIGVDGTIANVGVHGLPVQFDIEKLWIKNINITTGLVSANTTEEL LEALKSKIIQPEQLVTHYSKLSDIENAYDLFRNATDHKAIKLLIENDITE >gi|312979657|gb|ACRM01000008.1| GENE 149 161346 - 161672 375 108 aa, chain + ## HITS:1 COG:SA2324 KEGG:ns NR:ns ## COG: SA2324 COG0526 # Protein_GI_number: 15928115 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 108 1 108 118 135 66.0 2e-32 MTKNIESIEQFHQFIQTHRLVVIHVMRNHCSVCHAVLPQIEDIVNDYSKVHFAVINQSNV EAIAGELSIFTVPVDLIFLDGKEMHRQARFIDMQDFEHQLSLMHESLN >gi|312979657|gb|ACRM01000008.1| GENE 150 161725 - 162687 1257 320 aa, chain - ## HITS:1 COG:BS_lctE KEGG:ns NR:ns ## COG: BS_lctE COG0039 # Protein_GI_number: 16077374 # Func_class: C Energy production and conversion # Function: Malate/lactate dehydrogenases # Organism: Bacillus subtilis # 4 303 7 307 321 298 47.0 1e-80 MKRNKIVLIGSGFVGSAFAHAVVDKGLVDELAIIDINEDKAKADVWDLNHATPFGDKFVD VHLGSYSDCSDADIVVICASAKLDKGDTRLKLLEDNVNIFVPMIQKVIAHGFDGYFVLPS NPVDIMSYVIKRVSQFPKNKIIGSGTSLDTARFEFFLSRTFDVAPQNVYAPVIGEHGDSQ VAVWSHAQIAGEPVLDLLNKGVDQTAFKQSIASQTTQVGYDIYVRKGTTNFGISLSLVRI VEAILFNKNVIMNVSSYLEGEYGLNDLYIGTPTVINGNGADRVIELKLEEDELTRFKQSS HIILEHQQRADAIIESILNK >gi|312979657|gb|ACRM01000008.1| GENE 151 162849 - 163826 1348 325 aa, chain + ## HITS:1 COG:SA2323 KEGG:ns NR:ns ## COG: SA2323 COG0657 # Protein_GI_number: 15928114 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 322 1 321 322 374 55.0 1e-103 MKKRLLTVATSAILGTLAYIKVKEKRSYQSFITEKYIRMSGMKKTFENVNDAKKALEEVK PLTAGKYDGTDYEFKHRAHTRSINGSVTYIVNDKREPHQDVVLYIHGGAWFQDPLDNHFD FIDQLAGELDARVIMPVYPKVPHRDYRTTFELLKNIYQKEILEVENPQHMTIMGDSAGGQ IALSFAQYLKKETPLPQPGHIVMLSPVLDATFSNPEAKKYEKIDPMLGIEGSKYFIQLWS GDTPIEDYKISPINGDLEGLGRISIFIGTKETLYPDALKLSKMLNDKGIEHDFTPGYNLF HIYPIFPLPERQKFFIQLKNIMGKD >gi|312979657|gb|ACRM01000008.1| GENE 152 163907 - 164071 61 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRMGMLLTARLLISNMLLLNFDKISQPKHSIFIVFQMLRMILILLIILLLPFKK >gi|312979657|gb|ACRM01000008.1| GENE 153 164043 - 164186 95 47 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475510|ref|ZP_04060228.1| ## NR: gi|228475510|ref|ZP_04060228.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 47 1 47 47 83 97.0 5e-15 MDTTHKRTREILFTTIGAIVIMGLSGTVSDLLFNQRHIHADGYVTYC >gi|312979657|gb|ACRM01000008.1| GENE 154 164252 - 164569 289 105 aa, chain - ## HITS:1 COG:no KEGG:SH0530 NR:ns ## KEGG: SH0530 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 85 1 85 99 82 54.0 3e-15 MDKSMAKPVKIAVGIYLALVLLACSSYLIFILIGSLQGNDMSHSVLDTDPRYINNRSQSS NETINKNESPHSTSNFTEIKKEDALPSHKNTINTQYKETDTNSRE >gi|312979657|gb|ACRM01000008.1| GENE 155 164908 - 166065 1111 385 aa, chain + ## HITS:1 COG:no KEGG:SH0531 NR:ns ## KEGG: SH0531 # Name: pgsB # Def: poly-gamma-glutamate synthesis protein PgsB # Organism: S.haemolyticus # Pathway: not_defined # 15 385 15 385 385 660 86.0 0 MILIIICIALILFLGIREKKRHTHRLNKIPLRININGIRGKSTITRMIYSILREDQYHVI GKTTGTDARMLYWFTEKEYPVLRKPQGANIGEQRDIVQKVVKQKGNALVNECMAVNPDYQ IVFQEDLVKANIGVIVNVMEDHMDVLGPTLQDIAQAFTATIPRNGKLVVMKDEFTDFFAK EAKKRKTELIVVDKNDIPESYLRKFNYLVFPDNVAIALGVAQAVGVEKDVALRGMLNAPP DPGAVEIKYFNANNTKNVFVNAFAANEPQSTKAILNKVESYDYPYTKKVVILNCRSDRVD RTRQFVENFIEDVEFDTLICTGKSTQMVTDIMQRLPEKTYINLENHDFSDIEKAILSESH QALIFCVGNIHGPGGKIAEFIEGIE >gi|312979657|gb|ACRM01000008.1| GENE 156 166067 - 166519 620 150 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00463 NR:ns ## KEGG: SLGD_00463 # Name: not_defined # Def: poly-gamma-glutamate synthase subunit PgsC/CapC # Organism: S.lugdunensis # Pathway: not_defined # 1 150 1 150 150 205 96.0 3e-52 MIGSELYFSLFVGIVLSLIFAEKFGINPAGLVVPGYLALIFDQPIMLLSVLVISCLTYFI VTFGISRWVILYGRRKFAAMILTGMVLKFIFDLIYPLTPFEVVEVSGIGVVIPGIIANTI QKQGVVITLATTMLLTCMTYVILFLYSFIN >gi|312979657|gb|ACRM01000008.1| GENE 157 166543 - 167613 1106 356 aa, chain + ## HITS:1 COG:BS_ywtB KEGG:ns NR:ns ## COG: BS_ywtB COG2843 # Protein_GI_number: 16080641 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) # Organism: Bacillus subtilis # 27 355 25 370 380 110 26.0 3e-24 MKKTKRLSASEWLLKQSKRHKRRNFLYTFIVLVITVVLLIFAIRAVKVEPVETMPHSGNS IRNTYLGNITLNNDIRKVNLNDVFKSLRQPLQQSDFSTASLYVNQFSKNPKENLNKNIEN IMFLKKQNIKSINLINSTIDNVQAQDLSKKVEAQTDYNFLTGNGSNPINSKTVQQKVKNK KVANVSFTDIESYYEDPLKNTTSISLDPKIFVPLIKNLKENNDLVVVNVDWGIPNERNVT DRQKAYAHALVDAGADVIIGHNTVIQSIEKYKHASIFYSLGNLTSADFLSKNQKSIVVQH DWDGQHHQFQITPVRSADGKLTKDHMNSMESQRYYNNIKDKTIHLKEKNGGYSFEY >gi|312979657|gb|ACRM01000008.1| GENE 158 167603 - 167764 279 53 aa, chain + ## HITS:1 COG:no KEGG:SH0534 NR:ns ## KEGG: SH0534 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 52 6 57 58 81 86.0 9e-15 MNIKQNWLPIVTTLIIIAILLMVTFARANEGLDNYEKNELNKATEQYLSKGAK >gi|312979657|gb|ACRM01000008.1| GENE 159 167766 - 169364 2089 532 aa, chain + ## HITS:1 COG:BS_ggt KEGG:ns NR:ns ## COG: BS_ggt COG0405 # Protein_GI_number: 16078902 # Func_class: E Amino acid transport and metabolism # Function: Gamma-glutamyltransferase # Organism: Bacillus subtilis # 58 496 49 542 587 168 28.0 2e-41 MNIYNKVTLSVILVITILISFTFYFFNKEDKPDKDDLYENKIANRKSATSDEQKTYGVAS NNAIATRVGNRIIEDGGNAVDAAEGVAYALAVTEPHSSGLGGGGATLTYDGKNGEEPRMY EYKTTSSFNYKKGDKIGTPGFVRGLHDMHEKEGKMDEKKILNYVIPLAEDGFEVDSELER SLKLFGSDIDRNSPFFKGKRTVREGAIVKQPALANTLKKIRDKGPDYFYNHIGKSVSKQL KNQLTEEDFKQVKTEEKKPISTKYLNNTVYAASNPLGGILMEQGLKIDESVNSANDRTDY ITGIVKSRDIMYRNRDIVNGKESSSNTYLSQDYLLDKINGINFDAQGSDFNTQRIDNTST THFVVIDKNGKLASTTNTLSSFFGTGKYVKEGFYMNNSLTNFSTDPNSPNYGEKHKAPRS YTSPTIIVGPDFYMGIGSPGGNKIPTILNEVIVDYLRGNGTLQESINKPRFYNDGGTIFY ENAMDDNDVNIFKSLGFGVEEKRNDPNFGSVQGAVYNKKDRTVEVGQDVGNR >gi|312979657|gb|ACRM01000008.1| GENE 160 169555 - 171036 1460 493 aa, chain + ## HITS:1 COG:BS_xylB KEGG:ns NR:ns ## COG: BS_xylB COG1070 # Protein_GI_number: 16078824 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Bacillus subtilis # 5 490 4 493 499 534 52.0 1e-151 MKEAVLGIDLGTSAVKIIAVNQTGHVITSTSVPLNLIQSQPGYSEQDPEEWFNAVKTGIY RLNHSDEMKSYKVKGISFSGQMHGLVALDKEGHPVRHAILWNDTRNSEQCKQIRSVYGER LNGNPILEGFTLPKMMWVSTHEPELWKKVDVFVLPKDYVRYCLTGKIHMEYSDAASTLLL SPETHDWSKEVGDTFDIGDVYPSLVKSTDEVGMIQDPLASELGFTSPVKVFAGGGDNACG AIGAGIINDNDTLCSIGTSGVIVNVEKSNQTHYKNNIHFFDHSVPNTYYAMGVTLAAGYS LNWLKRAFFDNDTFDEIVKQASTSSIGANRLLFAPYLAGERTPHGDAFIRGSFIGISGNH SKSDFARAVLEGITFSLYDSIQLMREAGKEITHITSIGGGAKSEFWLQMQADIFNASIRK LKHEEGPSMGAAMIAAYGLQWFDSFDDCVAQFIDVEHIYEPNLQRHQQYESYYNIYKQIY QHTHQLTEALLKT >gi|312979657|gb|ACRM01000008.1| GENE 161 171281 - 171574 177 97 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNDIHFIDQLSHVNMIETLYLNSNDLKPSMNLFLNLLFKRLLLEYYVYIRTIYNKYACLE MPFLSFQLFFNHFHDLFYIMYTLIDTQNITTYSNVLE >gi|312979657|gb|ACRM01000008.1| GENE 162 171962 - 173005 1395 347 aa, chain + ## HITS:1 COG:SA2320 KEGG:ns NR:ns ## COG: SA2320 COG1299 # Protein_GI_number: 15928111 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 1 347 1 347 347 450 80.0 1e-126 MNIILGVGTLVLVLIVMTLFLNFAPYGKQGLQALSGAACATFLPQAFLSYAIGGVFHIHF FQVIGDLAGSLAGVAVGILTCVNLGISPVFAVIVGLVLHDFKLLPAFIAAYVISFGIKFI EKKVPEGLDLITVILIAPAVAFGLATVISPGVMAVLQQIGGAITAVGDSNPYALAVILGL VIPVTGMTPLSSMVLTSLLGLTGVPMAIGALTCTGASFVNYVMFSRLNIGGPSKAFAVFV EPLTQIDLIAKYPLQLYGTNALIGVVNACIVTFSGLVINVKGMATPIAGAIVLFGFNTPM KAVITIIAVAISSIILAFVISTLIKKFNLMDLSIKLPSKQKQPKESV >gi|312979657|gb|ACRM01000008.1| GENE 163 173008 - 173694 932 228 aa, chain + ## HITS:1 COG:SA2319 KEGG:ns NR:ns ## COG: SA2319 COG1760 # Protein_GI_number: 15928110 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 5 227 3 225 226 266 67.0 2e-71 MATKKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNATFNVLGGIKPETLAIHYYESFAK THQGHGTDLAIVGGAMGYSTFDSRIKDSLTIANDLGIHVDIIEEDGESIGEHPNCAYLIA EANGRHIEVIGNSIGGGTIKLRRISVEGIDVNFNHGLPILVMDGSKNKSEVNHFLNDVNE LGVSIDEELVDTDDDNSLVVLPLTKAIKESTLNQIKEKYNHLNISYIK >gi|312979657|gb|ACRM01000008.1| GENE 164 173708 - 174610 1426 300 aa, chain + ## HITS:1 COG:SA2318 KEGG:ns NR:ns ## COG: SA2318 COG1760 # Protein_GI_number: 15928109 # Func_class: E Amino acid transport and metabolism # Function: L-serine deaminase # Organism: Staphylococcus aureus N315 # 1 298 1 298 299 474 89.0 1e-134 MFDSIRETIDYAVENNMSFADIMIQEEMELSGQSRDEVRDLMKENLQVMRDAVVKGTTGD GVESVTGYTGHDAAKIRDYNENHHALSGHEMMEAVKGAVATNEVNAAMGIICATPTAGSS GTIPGVLFKLEKTHGLTEDQMVDFLFVASLFGRVVANNASVAGATGGCQAEVGSASAMAA AAAVSVFGGEPEASGHAMALAISNLLGLVCDPVAGLVEIPCVMRNAIGSGNALISADLAL AGVKSRIPVDEVIEAMDKVGRNLPAQLRETGLGGLAGTPTGEAIKQKIFGNAEDPVNSFS >gi|312979657|gb|ACRM01000008.1| GENE 165 174749 - 174952 151 67 aa, chain + ## HITS:1 COG:no KEGG:SH0541 NR:ns ## KEGG: SH0541 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 67 1 67 86 72 58.0 4e-12 MLRLYILFLAFIINTTLTRVWTIEGTWENLLLQSMSMSIMFVFLFYYVCFMLENRKHNKI DRLRDEE >gi|312979657|gb|ACRM01000008.1| GENE 166 175007 - 175513 606 168 aa, chain - ## HITS:1 COG:SA2317 KEGG:ns NR:ns ## COG: SA2317 COG1247 # Protein_GI_number: 15928108 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase and related acyltransferases # Organism: Staphylococcus aureus N315 # 4 164 1 161 163 213 65.0 2e-55 MLIIIREAERKDLPDIFNIYNDAILNTTAVYTYHPQSLNEREVWFETKVLANEPIFVFEI DNKVAGFATYGQFRHWPAYLYSIEHSIYVNKDYRRRGVASHLLEHLIDDAKHRQYRTIVA GIDTLNEASIKLHETFNFKHAGTIENVGYKFERWLDLAFYQYDLNTDK >gi|312979657|gb|ACRM01000008.1| GENE 167 175653 - 176258 702 201 aa, chain + ## HITS:1 COG:SA2316 KEGG:ns NR:ns ## COG: SA2316 COG3764 # Protein_GI_number: 15928107 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Sortase (surface protein transpeptidase) # Organism: Staphylococcus aureus N315 # 1 201 1 206 206 299 76.0 2e-81 MKNWTNRLMTMIGVILILVAVYLFAKPYIDNYLHQKDNNDKVEQYDKNDKSNTSKERPTI PKDKSKMAGYISVPDAEIKEPVYPGPATLEQLNRGVSFAEGDESLDDQNISIAGHTFTDR PHYQFTNLKAAKKGSKVYFKVGDETREYKMTSIRDVNPEDVQVLDEHEGETNQLTLITCD NYNQQTGVWEKRKIFVAKQIK >gi|312979657|gb|ACRM01000008.1| GENE 168 176436 - 177245 875 269 aa, chain + ## HITS:1 COG:SA2313 KEGG:ns NR:ns ## COG: SA2313 COG0561 # Protein_GI_number: 15928104 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 264 1 264 266 377 72.0 1e-104 MIRAIAVDMDGTFLDTNKEYDKVRFETIYQELKRKHIEFIAASGNQYAKLKSIFGERDMY FISENGAVIYHGNQLYNYCSFDQTIYDKVVNYIHLDQHIDEFIVCGLKSAYILKDTSEAF KKDAHFYYRQLEEIDTFQPLPNDEYVKIALNINRETHPTLDTDLETKFKEKIKLVSSGHD SIDIIMPNMTKGQALKRLLKKWEMSPSELMAFGDANNDKDMLEFAEHSYVMANSHDQSLF DIAKFVASSNDEQGVLQMIEEKVLKSETE Prediction of potential genes in microbial genomes Time: Sun May 29 09:11:09 2011 Seq name: gi|312979656|gb|ACRM01000009.1| Staphylococcus hominis subsp. hominis C80 cont1.9, whole genome shotgun sequence Length of sequence - 201113 bp Number of predicted genes - 193, with homology - 185 Number of transcription units - 113, operones - 49 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 38 - 1030 1280 ## COG1052 Lactate dehydrogenase and related dehydrogenases - Prom 1176 - 1235 10.7 + Prom 1159 - 1218 12.3 2 2 Op 1 . + CDS 1348 - 2016 639 ## COG0778 Nitroreductase + Prom 2035 - 2094 3.9 3 2 Op 2 . + CDS 2144 - 3637 2137 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 3676 - 3718 8.1 4 3 Tu 1 . + CDS 3969 - 4877 985 ## COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component + Term 4883 - 4917 2.0 - Term 4869 - 4905 5.0 5 4 Tu 1 1/0.467 - CDS 4912 - 5718 1089 ## COG2514 Predicted ring-cleavage extradiol dioxygenase - Prom 5749 - 5808 5.1 - Term 5793 - 5833 9.2 6 5 Tu 1 . - CDS 5847 - 6128 538 ## COG2388 Predicted acetyltransferase - Prom 6175 - 6234 11.8 + Prom 6160 - 6219 11.1 7 6 Tu 1 . + CDS 6319 - 7266 1170 ## COG0803 ABC-type metal ion transport system, periplasmic component/surface adhesin + Term 7271 - 7322 9.1 - Term 7260 - 7308 11.4 8 7 Op 1 . - CDS 7326 - 8750 1801 ## COG1012 NAD-dependent aldehyde dehydrogenases 9 7 Op 2 . - CDS 8827 - 9912 1309 ## COG3949 Uncharacterized membrane protein - Prom 9952 - 10011 9.9 + Prom 9931 - 9990 6.5 10 8 Tu 1 . + CDS 10194 - 11978 1621 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters + Term 11979 - 12041 19.6 - Term 11971 - 12020 17.0 11 9 Op 1 . - CDS 12032 - 13996 2171 ## COG3855 Uncharacterized protein conserved in bacteria - Prom 14022 - 14081 4.2 - Term 14062 - 14099 3.1 12 9 Op 2 . - CDS 14142 - 14753 275 ## PROTEIN SUPPORTED gi|154175107|ref|YP_001408238.1| ribosomal protein L22 - Prom 14808 - 14867 6.2 - Term 14786 - 14841 9.0 13 10 Op 1 5/0.067 - CDS 14871 - 15869 1130 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 14 10 Op 2 . - CDS 15869 - 16636 1088 ## COG2022 Uncharacterized enzyme of thiazole biosynthesis 15 10 Op 3 . - CDS 16638 - 16838 288 ## SH0563 hypothetical protein 16 10 Op 4 4/0.067 - CDS 16822 - 17937 1185 ## COG0665 Glycine/D-amino acid oxidases (deaminating) 17 10 Op 5 . - CDS 17930 - 18520 386 ## COG0352 Thiamine monophosphate synthase + Prom 18804 - 18863 9.6 18 11 Op 1 . + CDS 19041 - 20321 1838 ## COG0477 Permeases of the major facilitator superfamily + Term 20350 - 20389 5.0 + Prom 20409 - 20468 9.3 19 11 Op 2 . + CDS 20499 - 20783 453 ## COG1359 Uncharacterized conserved protein + Term 20788 - 20848 10.3 + Prom 20794 - 20853 4.5 20 12 Op 1 1/0.467 + CDS 20895 - 22832 2122 ## COG1289 Predicted membrane protein 21 12 Op 2 1/0.467 + CDS 22905 - 23318 746 ## COG4876 Uncharacterized protein conserved in bacteria + Term 23330 - 23369 6.0 + Prom 23392 - 23451 6.9 22 13 Tu 1 . + CDS 23475 - 24176 970 ## COG2357 Uncharacterized protein conserved in bacteria + Term 24189 - 24234 6.5 + Prom 24206 - 24265 12.7 23 14 Op 1 . + CDS 24300 - 25175 818 ## SH0571 hypothetical protein + Term 25218 - 25252 -0.1 + Prom 25181 - 25240 1.5 24 14 Op 2 2/0.089 + CDS 25267 - 25989 490 ## COG0789 Predicted transcriptional regulators + Term 25994 - 26030 5.7 + Prom 26022 - 26081 5.3 25 15 Op 1 2/0.089 + CDS 26106 - 26786 555 ## COG1802 Transcriptional regulators 26 15 Op 2 2/0.089 + CDS 26809 - 28347 1869 ## COG1070 Sugar (pentulose and hexulose) kinases 27 15 Op 3 . + CDS 28391 - 29746 1929 ## COG2610 H+/gluconate symporter and related permeases + Term 29756 - 29805 2.4 + Prom 29748 - 29807 8.6 28 16 Tu 1 . + CDS 29905 - 30771 1327 ## COG1210 UDP-glucose pyrophosphorylase + Term 30987 - 31020 4.0 + Prom 31128 - 31187 9.5 29 17 Op 1 3/0.089 + CDS 31214 - 31609 422 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 30 17 Op 2 . + CDS 31609 - 34440 2256 ## COG1061 DNA or RNA helicases of superfamily II + Term 34523 - 34580 14.9 + Prom 34683 - 34742 10.2 31 18 Tu 1 . + CDS 34772 - 34963 305 ## SH0583 hypothetical protein + Term 35085 - 35123 -0.8 - Term 35073 - 35111 -0.8 32 19 Tu 1 . - CDS 35120 - 35401 404 ## SH0584 hypothetical protein - Prom 35429 - 35488 8.8 + Prom 35420 - 35479 4.4 33 20 Tu 1 . + CDS 35554 - 36249 189 ## PROTEIN SUPPORTED gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 + Term 36265 - 36307 11.0 + Prom 36281 - 36340 6.5 34 21 Tu 1 . + CDS 36374 - 37606 1560 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases + Term 37615 - 37661 8.0 - Term 37597 - 37654 13.1 35 22 Op 1 . - CDS 37663 - 39828 2317 ## COG0855 Polyphosphate kinase 36 22 Op 2 . - CDS 39931 - 41472 1732 ## COG0248 Exopolyphosphatase - Prom 41581 - 41640 9.2 37 23 Tu 1 . + CDS 41688 - 42506 222 ## PROTEIN SUPPORTED gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 + Term 42535 - 42581 11.1 - Term 42778 - 42823 12.2 38 24 Tu 1 . - CDS 42894 - 43970 1505 ## COG1363 Cellulase M and related proteins - Prom 43997 - 44056 8.5 + Prom 44045 - 44104 8.5 39 25 Tu 1 . + CDS 44132 - 44593 642 ## COG4808 Uncharacterized protein conserved in bacteria + Term 44601 - 44649 8.2 - Term 44589 - 44635 5.4 40 26 Tu 1 . - CDS 44647 - 46227 2196 ## COG0069 Glutamate synthase domain 2 - Prom 46254 - 46313 8.6 + Prom 46259 - 46318 7.7 41 27 Op 1 3/0.089 + CDS 46411 - 47193 684 ## COG1266 Predicted metal-dependent membrane protease 42 27 Op 2 . + CDS 47216 - 48025 751 ## COG1266 Predicted metal-dependent membrane protease + Prom 48051 - 48110 5.4 43 28 Op 1 4/0.067 + CDS 48155 - 48817 865 ## COG4619 ABC-type uncharacterized transport system, ATPase component 44 28 Op 2 1/0.467 + CDS 48810 - 49586 1023 ## COG0390 ABC-type uncharacterized transport system, permease component + Term 49638 - 49693 5.2 + Prom 49615 - 49674 5.4 45 29 Tu 1 . + CDS 49718 - 50893 1276 ## COG2814 Arabinose efflux permease + Term 50894 - 50954 12.4 - Term 50889 - 50933 4.9 46 30 Op 1 . - CDS 50942 - 52291 1306 ## COG2272 Carboxylesterase type B - Prom 52315 - 52374 9.8 - Term 52329 - 52383 -0.2 47 30 Op 2 . - CDS 52393 - 54036 1743 ## COG0531 Amino acid transporters - Prom 54073 - 54132 15.3 - Term 54280 - 54320 9.2 48 31 Tu 1 . - CDS 54334 - 55389 1740 ## COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases - Prom 55619 - 55678 13.7 + Prom 55749 - 55808 3.9 49 32 Op 1 24/0.000 + CDS 55836 - 57134 1523 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components 50 32 Op 2 13/0.000 + CDS 57134 - 57769 910 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component 51 32 Op 3 13/0.000 + CDS 57794 - 58732 1134 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 52 32 Op 4 . + CDS 58735 - 59412 829 ## COG1174 ABC-type proline/glycine betaine transport systems, permease component + Term 59420 - 59481 9.2 - Term 59408 - 59467 10.6 53 33 Op 1 23/0.000 - CDS 59476 - 60177 1072 ## COG1346 Putative effector of murein hydrolase 54 33 Op 2 2/0.089 - CDS 60177 - 60632 642 ## COG1380 Putative effector of murein hydrolase LrgA - Prom 60806 - 60865 5.9 - Term 60795 - 60850 10.4 55 34 Op 1 9/0.022 - CDS 60867 - 61637 934 ## COG3279 Response regulator of the LytR/AlgR family 56 34 Op 2 . - CDS 61638 - 63392 1440 ## COG3275 Putative regulator of cell autolysis - Prom 63422 - 63481 8.0 57 35 Tu 1 . + CDS 63658 - 65058 1660 ## COG0477 Permeases of the major facilitator superfamily + Term 65087 - 65125 4.0 + Prom 65198 - 65257 9.7 58 36 Tu 1 . + CDS 65312 - 66244 1250 ## COG1893 Ketopantoate reductase + Term 66251 - 66299 6.1 + Prom 66263 - 66322 7.2 59 37 Tu 1 . + CDS 66345 - 66818 581 ## COG3477 Predicted periplasmic/secreted protein + Term 66827 - 66865 5.5 - Term 66808 - 66861 10.7 60 38 Op 1 . - CDS 66874 - 67716 758 ## COG0706 Preprotein translocase subunit YidC - Prom 67740 - 67799 2.5 61 38 Op 2 . - CDS 67814 - 69307 1267 ## COG1680 Beta-lactamase class C and other penicillin binding proteins - Prom 69523 - 69582 7.0 + Prom 69435 - 69494 10.4 62 39 Tu 1 . + CDS 69579 - 71405 2077 ## COG0531 Amino acid transporters + Term 71413 - 71466 11.2 - Term 71401 - 71454 10.4 63 40 Op 1 . - CDS 71459 - 73555 1785 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 73582 - 73641 3.9 - Term 73641 - 73674 5.4 64 40 Op 2 . - CDS 73688 - 75088 1783 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 75264 - 75323 10.5 + Prom 75183 - 75242 8.4 65 41 Tu 1 . + CDS 75396 - 76208 867 ## COG1409 Predicted phosphohydrolases + Term 76214 - 76265 6.6 - Term 76201 - 76253 11.1 66 42 Tu 1 . - CDS 76261 - 76872 607 ## COG4990 Uncharacterized protein conserved in bacteria - Term 77127 - 77183 4.0 67 43 Tu 1 . - CDS 77412 - 78077 789 ## COG2846 Regulator of cell morphogenesis and NO signaling - Prom 78203 - 78262 7.0 68 44 Tu 1 . - CDS 78303 - 79499 1128 ## COG0477 Permeases of the major facilitator superfamily - Prom 79525 - 79584 7.0 - Term 79563 - 79612 10.1 69 45 Op 1 . - CDS 79640 - 80359 1066 ## SH0630 hypothetical protein 70 45 Op 2 . - CDS 80375 - 81520 1371 ## COG1929 Glycerate kinase - Prom 81575 - 81634 15.1 + Prom 81490 - 81549 13.2 71 46 Op 1 . + CDS 81671 - 83167 1036 ## SH0632 hypothetical protein 72 46 Op 2 . + CDS 83170 - 83550 300 ## COG2246 Predicted membrane protein + Term 83558 - 83602 8.3 + Prom 83588 - 83647 12.0 73 47 Tu 1 . + CDS 83731 - 84606 1027 ## COG0053 Predicted Co/Zn/Cd cation transporters + Term 84611 - 84644 4.5 - Term 84589 - 84643 6.1 74 48 Tu 1 . - CDS 84647 - 85087 659 ## SH0635 hypothetical protein - Prom 85107 - 85166 4.9 + Prom 85333 - 85392 8.3 75 49 Tu 1 . + CDS 85435 - 86121 1010 ## COG0588 Phosphoglycerate mutase 1 + Term 86167 - 86217 12.4 - Term 86155 - 86205 6.1 76 50 Tu 1 . - CDS 86255 - 86353 181 ## - Prom 86433 - 86492 7.0 + Prom 86323 - 86382 7.0 77 51 Tu 1 . + CDS 86448 - 87887 1692 ## COG0477 Permeases of the major facilitator superfamily + Prom 87909 - 87968 7.8 78 52 Op 1 31/0.000 + CDS 88006 - 88806 1030 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 79 52 Op 2 34/0.000 + CDS 88787 - 89506 842 ## COG0765 ABC-type amino acid transport system, permease component 80 52 Op 3 . + CDS 89503 - 90234 637 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 90239 - 90290 14.0 - Term 90226 - 90277 7.2 81 53 Op 1 . - CDS 90336 - 90758 506 ## COG2030 Acyl dehydratase 82 53 Op 2 . - CDS 90799 - 92046 1294 ## COG2348 Uncharacterized protein involved in methicillin resistance - Prom 92163 - 92222 10.4 + Prom 92142 - 92201 11.0 83 54 Op 1 . + CDS 92314 - 92673 456 ## SH0643 hypothetical protein 84 54 Op 2 . + CDS 92707 - 93294 638 ## COG1651 Protein-disulfide isomerase + Term 93307 - 93356 5.2 + Prom 93457 - 93516 10.9 85 55 Tu 1 . + CDS 93594 - 94109 778 ## COG2353 Uncharacterized conserved protein + Term 94116 - 94167 13.1 + Prom 94131 - 94190 9.9 86 56 Op 1 . + CDS 94221 - 94691 689 ## COG3832 Uncharacterized conserved protein 87 56 Op 2 . + CDS 94763 - 94945 293 ## SH0648 hypothetical protein + Term 94957 - 95005 5.5 + Prom 94985 - 95044 6.7 88 57 Tu 1 . + CDS 95070 - 95888 954 ## COG2116 Formate/nitrite family of transporters + Term 95902 - 95944 6.1 + Prom 95925 - 95984 5.2 89 58 Tu 1 . + CDS 96013 - 96726 915 ## COG2138 Uncharacterized conserved protein + Term 96739 - 96795 11.1 + Prom 96765 - 96824 7.0 90 59 Op 1 14/0.000 + CDS 96937 - 99342 2861 ## COG1251 NAD(P)H-nitrite reductase 91 59 Op 2 2/0.089 + CDS 99354 - 99659 363 ## COG2146 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases 92 59 Op 3 1/0.467 + CDS 99650 - 100600 984 ## COG0007 Uroporphyrinogen-III methylase + Term 100625 - 100674 5.6 + Prom 100681 - 100740 5.0 93 60 Op 1 13/0.000 + CDS 100807 - 104490 4217 ## COG5013 Nitrate reductase alpha subunit 94 60 Op 2 12/0.000 + CDS 104480 - 106039 1668 ## COG1140 Nitrate reductase beta subunit 95 60 Op 3 12/0.000 + CDS 106032 - 106607 733 ## COG2180 Nitrate reductase delta subunit 96 60 Op 4 . + CDS 106600 - 107289 850 ## COG2181 Nitrate reductase gamma subunit 97 60 Op 5 . + CDS 107310 - 107762 500 ## SH0658 hypothetical protein 98 60 Op 6 19/0.000 + CDS 107796 - 108806 1022 ## COG4585 Signal transduction histidine kinase 99 60 Op 7 . + CDS 108832 - 109485 655 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 109529 - 109567 7.0 + Prom 109593 - 109652 9.8 100 61 Tu 1 . + CDS 109735 - 110892 1314 ## COG2223 Nitrate/nitrite transporter + Term 110898 - 110936 5.2 - Term 111047 - 111094 9.4 101 62 Op 1 . - CDS 111130 - 111546 614 ## COG0071 Molecular chaperone (small heat shock protein) - Prom 111598 - 111657 7.5 102 62 Op 2 . - CDS 111780 - 112223 519 ## COG1846 Transcriptional regulators - Prom 112411 - 112470 7.2 + Prom 112303 - 112362 11.9 103 63 Tu 1 . + CDS 112505 - 112864 477 ## SH0664 hypothetical protein + Term 112908 - 112970 6.4 + Prom 113101 - 113160 7.0 104 64 Tu 1 . + CDS 113212 - 114513 1600 ## COG1301 Na+/H+-dicarboxylate symporters + Term 114536 - 114570 4.0 - Term 114564 - 114614 6.7 105 65 Tu 1 . - CDS 114640 - 114993 449 ## SH0667 hypothetical protein - Prom 115015 - 115074 7.5 - Term 115104 - 115156 12.1 106 66 Op 1 1/0.467 - CDS 115169 - 115591 514 ## COG3871 Uncharacterized stress protein (general stress protein 26) 107 66 Op 2 . - CDS 115635 - 117740 1209 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 117802 - 117861 11.9 + Prom 118231 - 118290 8.7 108 67 Tu 1 . + CDS 118534 - 118614 106 ## + Term 118620 - 118661 8.1 - Term 118607 - 118649 2.0 109 68 Op 1 1/0.467 - CDS 118657 - 119598 881 ## COG0598 Mg2+ and Co2+ transporters 110 68 Op 2 . - CDS 119623 - 120246 554 ## COG1309 Transcriptional regulator - Prom 120339 - 120398 7.3 + Prom 120417 - 120476 5.0 111 69 Op 1 . + CDS 120529 - 120756 219 ## COG1511 Predicted membrane protein + Prom 120767 - 120826 3.9 112 69 Op 2 . + CDS 120848 - 120976 105 ## + Term 121033 - 121091 12.1 + Prom 121089 - 121148 10.8 113 70 Op 1 4/0.067 + CDS 121174 - 122421 1310 ## COG2372 Uncharacterized protein, homolog of Cu resistance protein CopC 114 70 Op 2 . + CDS 122438 - 123049 733 ## COG4549 Uncharacterized protein conserved in bacteria + Term 123064 - 123102 5.0 + Prom 123099 - 123158 4.1 115 71 Op 1 . + CDS 123179 - 123595 632 ## SH0680 hypothetical protein + Term 123607 - 123650 6.2 + Prom 123597 - 123656 11.4 116 71 Op 2 . + CDS 123684 - 124085 630 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 124277 - 124336 13.8 117 72 Tu 1 . + CDS 124494 - 132692 9055 ## SERP1011 cell wall associated fibronectin-binding protein + Term 132872 - 132934 10.0 118 73 Op 1 . - CDS 132899 - 133414 323 ## SO_4262 hypothetical protein 119 73 Op 2 . - CDS 133417 - 134115 343 ## Athe_2468 hypothetical protein 120 73 Op 3 . - CDS 134119 - 135336 1093 ## COG0582 Integrase 121 73 Op 4 . - CDS 135357 - 135953 998 ## gi|228474694|ref|ZP_04059425.1| conserved hypothetical protein - Term 135967 - 135994 0.1 122 73 Op 5 . - CDS 135999 - 136400 511 ## SACOL0888 pathogenicity island, lipoprotein, putative - Prom 136420 - 136479 2.3 123 73 Op 6 . - CDS 136484 - 137191 608 ## SLGD_02009 hypothetical protein - Prom 137212 - 137271 3.4 124 74 Op 1 . + CDS 137357 - 137542 254 ## SAB1910c SaPI1 Orf21 125 74 Op 2 . + CDS 137546 - 137818 460 ## SAR0369 hypothetical protein 126 74 Op 3 . + CDS 137835 - 137993 181 ## 127 74 Op 4 . + CDS 137983 - 138315 505 ## SAB1907c hypothetical protein 128 74 Op 5 . + CDS 138383 - 138694 487 ## 129 74 Op 6 . + CDS 138778 - 139485 471 ## gi|284023385|ref|ZP_06377783.1| bacteriophage resistance protein 130 74 Op 7 . + CDS 139521 - 140390 864 ## SAK_0619 bacteriophage resistance protein + Prom 140433 - 140492 9.3 131 75 Op 1 . + CDS 140548 - 141369 687 ## spyM18_1288 hypothetical protein 132 75 Op 2 . + CDS 141344 - 141625 143 ## gi|66395181|ref|YP_239458.1| ORF017 133 75 Op 3 . + CDS 141622 - 142266 468 ## SH2091 hypothetical protein 134 75 Op 4 . + CDS 142266 - 142847 315 ## gi|228474653|ref|ZP_04059384.1| hypothetical protein STAHO0001_1183 + Term 142855 - 142893 6.1 + Prom 143046 - 143105 10.9 135 76 Op 1 . + CDS 143263 - 143595 368 ## SH2089 hypothetical protein 136 76 Op 2 . + CDS 143664 - 144254 590 ## SH2088 hypothetical protein 137 76 Op 3 . + CDS 144254 - 144466 426 ## gi|228474578|ref|ZP_04059309.1| conserved hypothetical protein + Term 144477 - 144509 0.3 138 76 Op 4 . + CDS 144521 - 144958 277 ## COG5577 Spore coat protein 139 76 Op 5 . + CDS 144958 - 145284 358 ## SH2085 hypothetical protein 140 76 Op 6 . + CDS 145295 - 145867 730 ## COG3728 Phage terminase, small subunit + Term 145939 - 145990 7.6 + Prom 146213 - 146272 10.3 141 77 Tu 1 . + CDS 146471 - 146659 266 ## SH2322 hypothetical protein - Term 146702 - 146743 -0.4 142 78 Tu 1 . - CDS 146836 - 147036 129 ## - Prom 147110 - 147169 8.4 143 79 Tu 1 . - CDS 148744 - 149334 269 ## - Prom 149360 - 149419 2.2 + Prom 149439 - 149498 8.8 144 80 Tu 1 . + CDS 149711 - 152101 2914 ## SAV1435 hypothetical protein + Term 152134 - 152182 7.2 145 81 Tu 1 . - CDS 152191 - 153186 1527 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases - Prom 153285 - 153344 11.1 + Prom 153308 - 153367 12.6 146 82 Op 1 9/0.022 + CDS 153506 - 154360 1188 ## COG2822 Predicted periplasmic lipoprotein involved in iron transport 147 82 Op 2 1/0.467 + CDS 154357 - 155583 1308 ## COG2837 Predicted iron-dependent peroxidase 148 82 Op 3 . + CDS 155564 - 157294 1509 ## COG0672 High-affinity Fe2+/Pb2+ permease + Term 157303 - 157359 16.3 - Term 157295 - 157342 11.1 149 83 Op 1 28/0.000 - CDS 157365 - 158120 462 ## COG0805 Sec-independent protein secretion pathway component TatC 150 83 Op 2 . - CDS 158062 - 158286 360 ## COG1826 Sec-independent protein secretion pathway components - Prom 158334 - 158393 12.0 + Prom 158306 - 158365 9.2 151 84 Tu 1 . + CDS 158385 - 158978 655 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 158993 - 159041 17.4 - Term 158971 - 159036 20.0 152 85 Tu 1 . - CDS 159038 - 160720 1509 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 160942 - 161001 12.1 + Prom 160892 - 160951 8.8 153 86 Tu 1 . + CDS 161076 - 162677 2254 ## COG1620 L-lactate permease + Term 162690 - 162734 10.4 - Term 162677 - 162722 9.1 154 87 Tu 1 . - CDS 162727 - 163872 1134 ## COG0438 Glycosyltransferase - Prom 164043 - 164102 14.4 + Prom 164036 - 164095 12.1 155 88 Tu 1 . + CDS 164184 - 165662 1764 ## COG0579 Predicted dehydrogenase + Term 165672 - 165711 4.3 - Term 165651 - 165708 16.1 156 89 Op 1 40/0.000 - CDS 165714 - 167087 1192 ## COG0642 Signal transduction histidine kinase 157 89 Op 2 . - CDS 167080 - 167754 686 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain - Prom 167880 - 167939 8.7 + Prom 167746 - 167805 7.2 158 90 Op 1 36/0.000 + CDS 167884 - 168939 1234 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 159 90 Op 2 . + CDS 168939 - 169604 297 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 169625 - 169683 11.4 - Term 169622 - 169663 6.5 160 91 Tu 1 . - CDS 169674 - 170630 529 ## COG1434 Uncharacterized conserved protein - Prom 170741 - 170800 9.6 + Prom 170566 - 170625 11.0 161 92 Op 1 1/0.467 + CDS 170802 - 171263 519 ## COG1846 Transcriptional regulators 162 92 Op 2 1/0.467 + CDS 171363 - 172727 1290 ## COG4640 Predicted membrane protein 163 92 Op 3 . + CDS 172748 - 173953 1038 ## COG0477 Permeases of the major facilitator superfamily + Term 173961 - 174017 2.4 - Term 173947 - 174005 14.2 164 93 Tu 1 . - CDS 174013 - 174564 300 ## COG1309 Transcriptional regulator - Prom 174744 - 174803 6.1 + Prom 174593 - 174652 12.4 165 94 Op 1 19/0.000 + CDS 174686 - 175333 852 ## COG1566 Multidrug resistance efflux pump 166 94 Op 2 . + CDS 175346 - 177439 2566 ## COG0477 Permeases of the major facilitator superfamily + Term 177444 - 177499 8.1 - Term 177424 - 177496 7.0 167 95 Tu 1 . - CDS 177518 - 178147 548 ## SAS2242 hypothetical protein - Prom 178310 - 178369 9.8 + Prom 178243 - 178302 6.2 168 96 Tu 1 . + CDS 178340 - 179239 784 ## COG0657 Esterase/lipase + Term 179241 - 179301 13.7 - Term 179234 - 179283 6.3 169 97 Op 1 . - CDS 179292 - 179708 484 ## SH0709 hypothetical protein 170 97 Op 2 . - CDS 179708 - 180187 603 ## COG0824 Predicted thioesterase 171 98 Op 1 1/0.467 + CDS 180309 - 181256 778 ## COG0598 Mg2+ and Co2+ transporters 172 98 Op 2 . + CDS 181291 - 182340 1232 ## COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases + Term 182347 - 182393 9.5 - Term 182335 - 182381 10.4 173 99 Tu 1 . - CDS 182401 - 183009 763 ## COG2094 3-methyladenine DNA glycosylase - Prom 183146 - 183205 9.1 + Prom 183217 - 183276 4.2 174 100 Op 1 1/0.467 + CDS 183304 - 183630 466 ## COG1742 Uncharacterized conserved protein 175 100 Op 2 . + CDS 183660 - 184670 331 ## PROTEIN SUPPORTED gi|15900011|ref|NP_344615.1| aldose 1-epimerase + Term 184686 - 184738 5.9 - Term 184678 - 184722 1.6 176 101 Tu 1 . - CDS 184726 - 185382 679 ## COG2258 Uncharacterized protein conserved in bacteria - Prom 185476 - 185535 10.1 + Prom 185377 - 185436 8.5 177 102 Tu 1 . + CDS 185542 - 186231 834 ## COG0120 Ribose 5-phosphate isomerase + Term 186236 - 186274 4.1 - Term 186223 - 186261 4.1 178 103 Tu 1 . - CDS 186265 - 187353 1284 ## SH0722 hypothetical protein - Prom 187495 - 187554 9.4 + Prom 187376 - 187435 9.6 179 104 Tu 1 . + CDS 187585 - 188520 1159 ## COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family + Prom 188553 - 188612 3.8 180 105 Op 1 1/0.467 + CDS 188677 - 189795 1367 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Prom 189799 - 189858 2.2 181 105 Op 2 . + CDS 189884 - 190765 1433 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) + Term 190790 - 190827 7.3 182 106 Op 1 . + CDS 190843 - 191454 786 ## COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family 183 106 Op 2 1/0.467 + CDS 191494 - 192843 1525 ## COG1757 Na+/H+ antiporter + Prom 192866 - 192925 9.1 184 107 Tu 1 . + CDS 192965 - 193483 631 ## COG3832 Uncharacterized conserved protein + Term 193490 - 193551 15.2 - Term 193476 - 193539 8.1 185 108 Tu 1 . - CDS 193544 - 194302 738 ## COG1737 Transcriptional regulators - Prom 194353 - 194412 11.1 + Prom 194370 - 194429 6.2 186 109 Tu 1 . + CDS 194504 - 196111 2014 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 196122 - 196158 8.2 - Term 196104 - 196151 9.3 187 110 Tu 1 . - CDS 196157 - 196687 482 ## SH0733 hypothetical protein - Prom 196872 - 196931 9.1 + Prom 196814 - 196873 9.3 188 111 Op 1 1/0.467 + CDS 196973 - 197887 895 ## COG0385 Predicted Na+-dependent transporter 189 111 Op 2 . + CDS 197937 - 198581 738 ## COG0637 Predicted phosphatase/phosphohexomutase 190 111 Op 3 . + CDS 198587 - 198778 180 ## SH0735 hypothetical protein + Term 198806 - 198838 2.5 - Term 198788 - 198833 7.5 191 112 Op 1 . - CDS 198834 - 199022 273 ## 192 112 Op 2 . - CDS 199029 - 199373 347 ## SH0738 hypothetical protein - Prom 199518 - 199577 9.4 + Prom 199546 - 199605 9.6 193 113 Tu 1 . + CDS 199702 - 201090 1945 ## COG1113 Gamma-aminobutyrate permease and related permeases Predicted protein(s) >gi|312979656|gb|ACRM01000009.1| GENE 1 38 - 1030 1280 330 aa, chain - ## HITS:1 COG:SA2312 KEGG:ns NR:ns ## COG: SA2312 COG1052 # Protein_GI_number: 15928103 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 330 22 351 351 540 82.0 1e-153 MTKIMFFGTRDYEKKDALNWGKEHNVEVVTSEDILSEDTVDQLEGFDGVTTMQFGKLADS VYPKLEKYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRK FPAIEKRVQEHNFKWAAPIMSTPVKNMTVAIIGTGRIGAATGKIYAGFGAKVVGYDAYPN NSLDFLEYKDSVEEAIADADIISLHVPANKESFHLFDADMFSKVKKGAVLVNAARGAVID TPALIDAVNDGTLYGAAIDTYENEADYFTYDWTGKEIEDKTLLELIENENILVTPHIAFF SDEAVRNLVEGGLNAALSVINTGKCDTQLN >gi|312979656|gb|ACRM01000009.1| GENE 2 1348 - 2016 639 222 aa, chain + ## HITS:1 COG:SA2311 KEGG:ns NR:ns ## COG: SA2311 COG0778 # Protein_GI_number: 15928102 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Staphylococcus aureus N315 # 3 221 1 219 223 283 62.0 2e-76 MTINQIQNTIIDAFKFRFATKEFDTTKKISDSEFNTILEAGRLSPSSLGLEPWRFLVIQN ETLREKLIPYSSGAQKQLNSASHFVLILARKNVTPTSDYVQSFIRGIKQYEESTIPMFED KVQGFQTRFHINDNARTILDWASKQTYIALGNMMTAAALMNIDSCPMEGFDLDGVTELLE HEGIIDSNQFAPSVMVAFGYRKENPTKPKTRQPQEDIIKWIN >gi|312979656|gb|ACRM01000009.1| GENE 3 2144 - 3637 2137 497 aa, chain + ## HITS:1 COG:SA0162 KEGG:ns NR:ns ## COG: SA0162 COG1012 # Protein_GI_number: 15925871 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 4 497 3 495 495 689 68.0 0 MAKVNVRDFLDEQYDLFINGEFQPSESGETLTVTNPANGEELAKVAKANEKDVDKAVQSA HEAFDSWSKISKAERADYLLEISRRIEENKEHLATVESLQNGKPYRETSTIDVPQVAEQF KYFAGVLTTDEGSVNQIDHNTMSLVVNEPVGVVGAVVAWNFPILLASWKLGPALAAGNTV VIQPSSSTPLSLIELAKILQDVLPKGVVNVITGKGSESGDAIFKHEGVNKLSFTGSTSVG YGVAKAGAERIVPTTLELGGKSANIIFDDANLDQVIEGVQLGILFNQGEVCSAGSRLLVQ SSLYDKLLPKLKEAFENIKVGDPFAEDTKMGAQTGPEQIEKIESYIKLAEEDDKANILTG GHRITDNGLDKGYFFEPTIIELSDNSHKLAQEEIFGPVIVVEKFEDEEEAINIANDSEYG LAGGVFTTNLLRALNVAKAIRTGRIWVNTYNQIPAGAPFGGYKKSGIGREVYKDAIKNYQ QVKNIFIDTSNETKGLY >gi|312979656|gb|ACRM01000009.1| GENE 4 3969 - 4877 985 302 aa, chain + ## HITS:1 COG:SA0138 KEGG:ns NR:ns ## COG: SA0138 COG3221 # Protein_GI_number: 15925847 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate/phosphonate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 301 1 314 318 286 49.0 3e-77 MKRLKFLVIYLVITIIVSGCSNIDNVKHPKEAYTPKSLTVEFVPSQNAQILNAKVKPLQQ LLSDELEVPVKVHIATNYNTMIEGLKSKKIDIAFISPVSYTLAHDAHAADVLLKSKGYLV DNKGNQTHHLVDYYRSQIVVRKDSNMNHLKDLKDKRVALQDVESTSGYIYPLASLMEKGI KKSDIQIQQVKGHDQGLIALLNHDVEAVATYQDARADLKKEYPNIYQETKVIYRTKKIPN DTISVRNDMSSKWKKKISKAFIDISHTKKGKHVISDIYGHQGYEKAKDSDFDTVRKYRDI VD >gi|312979656|gb|ACRM01000009.1| GENE 5 4912 - 5718 1089 268 aa, chain - ## HITS:1 COG:SA2310 KEGG:ns NR:ns ## COG: SA2310 COG2514 # Protein_GI_number: 15928101 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Staphylococcus aureus N315 # 3 268 2 267 268 350 63.0 1e-96 MTAFHSKEAMQVTNVTLNVKDLNKMNHFYSEVLGFSIKKKTDTQTIFNVGEHGHTLTLHL LNHGRHPEFREAGLFHIAYLLPSRQDLANFLYHMSRLNQPVGGGDHLVSEALYFNDPEGN GIEVYQDRPSSGWEWENGFIKMDTLEVDAQDLISHRTEKGWQGFPSDGKLGHLHLKTHNL MEARQFYIDQLGFEHISNLPQSLFISTQHYHHHIAVNTWQSNQVNPDNKNTYGLTHIDIY QPHAKETNLTSPEGFSVTVHGDVSVVPD >gi|312979656|gb|ACRM01000009.1| GENE 6 5847 - 6128 538 93 aa, chain - ## HITS:1 COG:SA2309 KEGG:ns NR:ns ## COG: SA2309 COG2388 # Protein_GI_number: 15928100 # Func_class: R General function prediction only # Function: Predicted acetyltransferase # Organism: Staphylococcus aureus N315 # 4 93 5 94 94 132 81.0 1e-31 MAEEIKQGNNKFYVGEDENNPKAEITYKQVDNNEIEIDHTGVSDELGGQGLGTKLVDAVV EHARQNNLKIIASCPFAKDVLEKNDSYQDVYLG >gi|312979656|gb|ACRM01000009.1| GENE 7 6319 - 7266 1170 315 aa, chain + ## HITS:1 COG:SA2194_1 KEGG:ns NR:ns ## COG: SA2194_1 COG0803 # Protein_GI_number: 15927984 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface adhesin # Organism: Staphylococcus aureus N315 # 8 314 5 321 330 246 42.0 4e-65 MIAIIGLMGLCLILSACSTNRDITHKQKKVTTENKLKIYTTVFAFESFTKQIGGKYVDVD TIYPPGADMHTYEPSQRDMINIAKSDLFVYSSDHLDPVAAKITKSMNNNDMKLAVANSLN KQILVNEDDDHDEHGHHHEATSYDPHVWLDPILDQQFAKKIKDDLVHKDPAHRRYYEHNY KQLVEDLKQIDHTLSNITTRPKRDKVIISHDSLGYLARRYHFEQEGISGMNNKEPSQKDI LALINQIKDTHEPYILYEQNISSKITDVIRKETQTQPVNFNNLAVLSQSQSEDQTLTFQS IMKKNIQALDKALNK >gi|312979656|gb|ACRM01000009.1| GENE 8 7326 - 8750 1801 474 aa, chain - ## HITS:1 COG:ECs2021 KEGG:ns NR:ns ## COG: ECs2021 COG1012 # Protein_GI_number: 15831275 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Escherichia coli O157:H7 # 5 473 9 478 479 384 41.0 1e-106 MTNQLFINNEFVESKSNETMDVINPATGETIDTITFATEEEVNDAIEKSKHAQLEWEKVP APTRAEHVKLLIPLLEQHKDDIAHLYVKEQGKTMVQAKGEIDKSIEFIDYMASLSMSNKG EVLQNSIVNETIQLTKKPIGVTAGIVPWNAPILVLMRKVIPAIVTGCSVVIKPSEETTLL TLKIAELFRDSTIPAGLIQIVPGTGETVGTQLATHKDIQLVSLTGSMGAGKAVFKNAADS IKKLNLELGGNAPVLVTQHADLDKAVDYIVTARINNAGQVCTCPERIFVHEDVHDDFINK VKDKMDALQVGDPYDENTDYGAIINQKQLDSIDDKVQEAVKHGADLVLGGYKLDREGFFY APTILDHVKTTDSAFKEEIFGPVLAITTYTNFDDVIDMANDTNAGLSSYIFSENLKEIMT ATERLKFGEVYANCEAEEAVNGYHAGWRESGLGGADGIHGFEEYYNTTVSYIRW >gi|312979656|gb|ACRM01000009.1| GENE 9 8827 - 9912 1309 361 aa, chain - ## HITS:1 COG:SA2305 KEGG:ns NR:ns ## COG: SA2305 COG3949 # Protein_GI_number: 15928096 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Staphylococcus aureus N315 # 1 346 1 348 359 390 70.0 1e-108 MKVLKESMIVAFAFVGVVVGAGFATGQEIFQFFTSNGQFSVLGIMITGLIITLGGMFVLN TGYNIKSHNHSESIHYYLHPMIARLFDIVLTLFLFSLAIIMSAGGASTIQESFHLPYWLS SLILVGLILVTLFLKFDRLIAVLGIVTPFLVIVVTIIAIYYLATGHLDFESANQYAQHKS SISLGWWFDGINYASLQIAAAFSFLSVMGGRLHDQRASIWGGLIGGVIITFLLLMINLGL MTKFNDIKSVALPTLLLARHISPILGTIMSIIMTLVIYNTIVGLMYAFASRFTTPFSKQY FVLIIVMTIVTFICTFIGFISLIGKVFPIMGLFGFILLIPILYKGVRHFKYSKKEGSKGE H >gi|312979656|gb|ACRM01000009.1| GENE 10 10194 - 11978 1621 594 aa, chain + ## HITS:1 COG:VC0689_1 KEGG:ns NR:ns ## COG: VC0689_1 COG0025 # Protein_GI_number: 15640708 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Vibrio cholerae # 1 420 1 413 414 230 32.0 5e-60 MLFDLPVMLVIVLFLALGIFSQWLANRIKWPSIVVMSIVGLLVGPILGLANPEQTLGSEI FSPIVSLAVAIILFEGSSNLDFRELKGISKAVIRIITIGATIAWALGAIALHKILGFPIS IAIVMGGLLLITGPTVIQPLLKQAKVRNSVDTVLRWESIILDPLGPILALAAFYVYQIVG QGFGFQLLLIFIFKMLIVALIGFGASFFFNWLIQRDVIPQNLMPSIQLVFILLVFSICDQ ILDESGLLAVTIFGLMMARYKRHDLIYKESDHFIENMSSILVSTVFILITSSLTPSVLMN VLSWKLVIFSLVMIVLVRPIAVLLSTIGTEITKKERALVAMMAPRGIVVLTVAQFFGGLF LNDNIKMASYITPVTFGLVFITVVIYGFSFTPISKMLGLASTEPPGVILVGESEFSYHLG RQLQSHGIPVMVFNLFSNTSDKAEELGFEIFKGNLLSSSDRMYADLIRYNKCLLMTKSFI FNSLAFNELVPEFGLNNVNMMPVSFTDDQARNNLNGPLRNHILFDEKHSPRWFDNVITNQ NIIEVPASSYHDITDKDMIIYHISDDKEATFHRSTKSMDEYDNGTYGILRNVYK >gi|312979656|gb|ACRM01000009.1| GENE 11 12032 - 13996 2171 654 aa, chain - ## HITS:1 COG:SA2304 KEGG:ns NR:ns ## COG: SA2304 COG3855 # Protein_GI_number: 15928095 # Func_class: G Carbohydrate transport and metabolism # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 653 1 653 654 1081 82.0 0 MSQSTESELKKKYLDLLSQQFDSPEKLATEIINLESVLELPKGTEHFVSDLHGEYKSFQH VLRNGSGNVRAKINDIFSGNISQKEIDDLAALVYYPEEKLKLIKNDFNSKRELNEWYILT IERLIDLITYCSSKYTRSKLRKALPSEYTYIIEELLYKNNEFNNKKSYYETLLNQVIELE QSDDLIIGLSYTIQRLVVDHLHVVGDIYDRGPEPDKIMDTLIDYHSVDIQWGNHDVLWIG AYAGSKVCLANLLRICARYDNLDIIEDAYGINLRPLLTLAEKHYDGDNPAFKPKKRPDKK VGLSKHEEAQITKIHQAIAMIQFKLEMPIIKRRPSFEMEDRLVLEKINYDTNEITIYGKT YPLKDTCFSTVDPKDPAKLLPEEEDVVNKLLLSFQQSEKLKRHMAFLMQKGKLYLPYNGN LLIHGCIPVNDNGEMESFEIEGVKHKGRDLLDVFERHVRLAFSDKEKTDDLSTDLVWYLW TGKYSSLFGKRAMTTFERYFIEDKASHKEPKNPYYYLREDVDMIRKMLKDFGLNPDEGRI INGHTPVKEIDGEDPIKANGKMLVIDGGFSKAYQSTTGIAGYTLLYNSFGMQLVAHQFFD SKENVLSDGADELSVRRVVDEELQRKKIRDTNVGKDIMEQIRMLKLLMHDRYLK >gi|312979656|gb|ACRM01000009.1| GENE 12 14142 - 14753 275 203 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|154175107|ref|YP_001408238.1| ribosomal protein L22 [Campylobacter curvus 525.92] # 1 203 1 198 199 110 30 5e-23 MEQIITNFIGQWGYAAIFILILLENVLPVVPSEIILTFAGLMSVKSGLSILVLFIISTIA SFIGLLILYYLCRLIKEESIYRFVDKYGKWFKLKGNDVKRANDWFKRYGAWAVLLCRFIP VLRVLITIPAGINKMNVATFTMLSLLGTTIWNFALILLGRLLSDSFDVLMSGIHTYSYFM YVILIIIILYVLYRLFFKKNNAK >gi|312979656|gb|ACRM01000009.1| GENE 13 14871 - 15869 1130 332 aa, chain - ## HITS:1 COG:BH1419 KEGG:ns NR:ns ## COG: BH1419 COG0476 # Protein_GI_number: 15613982 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Bacillus halodurans # 2 328 7 338 340 209 33.0 6e-54 MQRYNRQMRYHAFGEDGQIALSNATILILGAGALGSHVAELLARMGAHHLAIVDMDIVEL SNLHRQALYTEDDAHHMVPKVHAVKQKIEHINSNVNVQTYYQEIDSTTIEDIFKAVNPDI VIDGMDHFKIRYLINEACHKHHIPWVYGAAVGSKGTVYGIDFKGPCLKCLLKHIPTSAES CAINGVLPPVITQVASYEVTEAIRYLSGHGFSHKLITLDAFNIDYKALNIDVLKDDECDV CGKGHYELLETKQQQNIESLCGKTYLFRYQPTAFDYAEHFPGDIVKSTSFAKLIKDGNYD ITLFKDGRMNVYGVEDDNEAEQLYHQYLKSLK >gi|312979656|gb|ACRM01000009.1| GENE 14 15869 - 16636 1088 255 aa, chain - ## HITS:1 COG:BS_yjbT KEGG:ns NR:ns ## COG: BS_yjbT COG2022 # Protein_GI_number: 16078234 # Func_class: H Coenzyme transport and metabolism # Function: Uncharacterized enzyme of thiazole biosynthesis # Organism: Bacillus subtilis # 1 252 3 254 256 317 64.0 1e-86 MFKIGPLEIKSRLLLGTGKFEDEATQTKAIEAAEANVLTFAVRRMNLYDKNLPNPLANIN LKDFITFPNTAGAKTAEEAIRIAEIAKHAGVCDMIKVEVIGDDETLLPDPFETYEACKVL LEKGYIVCPYISNDVVLAKRLEELGVHAVMPLASPIGTGRGINNQLNLSYIIKHSNVPVI VDAGIGSPKDACHAMELGADAILLNTAVSGAKDPVKMAEAMKLGIHAGRLSYEAGRIPVK YTAQASSPTEGLGFL >gi|312979656|gb|ACRM01000009.1| GENE 15 16638 - 16838 288 66 aa, chain - ## HITS:1 COG:no KEGG:SH0563 NR:ns ## KEGG: SH0563 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 66 1 66 66 105 89.0 4e-22 MKCIINGDAFNFDSEQSITSVLESLELDPKRVIVEHNKTLIKQEDYDQHTVREDDQLELL EFVGGG >gi|312979656|gb|ACRM01000009.1| GENE 16 16822 - 17937 1185 371 aa, chain - ## HITS:1 COG:BS_yjbR KEGG:ns NR:ns ## COG: BS_yjbR COG0665 # Protein_GI_number: 16078232 # Func_class: E Amino acid transport and metabolism # Function: Glycine/D-amino acid oxidases (deaminating) # Organism: Bacillus subtilis # 20 348 23 347 369 144 31.0 3e-34 MHDVLIIGSGVIGMSIARQLSQSHLDIALIDRDVPGKHASYKAGGMLGAQNEFTEDTDLF RLALESRSLFPQLCQDLEAETGIDIQFQNSGLIKVANRPEDVESLEKQYQFLSGLDSSVI VLSDEELTHLTNGTVTSSEMAIYIPQDGQINANHYTKALFTSLKQRQIKRYVNTEVQSVH RQNGYYDIETSQGTLQSKKVIVAAGAWTSKLLTQYSLPRDVVGVKGEVLLIENDHLDLKE TVFMTNGCYIVPKYPNRFLIGATSEFDNYSVGNTDDGISWLHHFANERIPELAHGKVIKQ WSGVRPYTEGEIPIMDRIDEDLYVISGHYRNGILLSPIIGRDIANWILTGVKPHRYESFS ASRRLNHEVYH >gi|312979656|gb|ACRM01000009.1| GENE 17 17930 - 18520 386 196 aa, chain - ## HITS:1 COG:BS_tenI KEGG:ns NR:ns ## COG: BS_tenI COG0352 # Protein_GI_number: 16078231 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Bacillus subtilis # 38 190 38 191 205 60 29.0 3e-09 MFIFIAITKYKDLTNDDVQHFLDISDGIDGLLFRTPMSSSDLSSFLTSLIEKGFPKSKII IHSDVHLLEQLHLSHIHFREMDEDAFSYKSTHPEIEVSMSTHSIESVKAAYEHDLDYVFF GHIFKTPSKPNQLPRSKAEIQRVLEIPIPIYAIGGITEKTILQLPHGFKGICAISFFMNA SLQQIELLRKEWLKDA >gi|312979656|gb|ACRM01000009.1| GENE 18 19041 - 20321 1838 426 aa, chain + ## HITS:1 COG:SA2300 KEGG:ns NR:ns ## COG: SA2300 COG0477 # Protein_GI_number: 15928091 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 4 426 2 424 425 640 79.0 0 MVQRQKKSNVRWYFAIAFFIIGVIAYMDRSNISFIAPQMMEDLHMTKQQFGLLASFFSLG YALMQVPSGMLAEKFGPRKMISIALLWWSAFTILTGMIKHHGLLYLVRFLFGIGEAPMYP SNAVFNSTWFAKDEKGRASSALLAGSYFGPVLAPVITIAIVNAFNWQAVFYIFGAVGIVI AALWAIIAKDLPEQHRMVNDAEKQYIMQHRDLVETTKSVAPWNQFFKRISFYAIAGQYFV VQFVIALFLIWLPTYLTEQYHVQFKDMTISALPWFIMFILILSAGAISDKILHSGQSRFV ARGLIAIVGFIVFAISIFFAVHTQNLYVTIFWLSLGLGGMGISMGMSWAAANDIGRNFAG TVSGWMNLWGNIGALISPFLAGALVSSLGWTMTFQLLIIPAVIAAVLWFFVTPDKPLIKG ESRHIK >gi|312979656|gb|ACRM01000009.1| GENE 19 20499 - 20783 453 94 aa, chain + ## HITS:1 COG:L178303 KEGG:ns NR:ns ## COG: L178303 COG1359 # Protein_GI_number: 15672567 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Lactococcus lactis # 1 94 1 94 94 70 38.0 7e-13 MIIINAKLKIKEDVRNDYLDLMNKLVQSSRQEPGNTFYAHYEDVAEHNTFVVVENYKDQE AVQAHNHSDHFKAFSENIGKYVAEEPVIDVAETK >gi|312979656|gb|ACRM01000009.1| GENE 20 20895 - 22832 2122 645 aa, chain + ## HITS:1 COG:SA2299 KEGG:ns NR:ns ## COG: SA2299 COG1289 # Protein_GI_number: 15928090 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 28 626 1 598 607 686 61.0 0 MGHVIASLIRFDKPKINLWKGIRQGLLMIIPTLIGYLLGHFSFGLLVATGTLAHTYVFKG SAQSMLRTVIICTLSFTICMMLGTLTVNQPVLYGVLLLIVTVIPFYVFNVLKIAGPSSTF FLVTFCLSSNLPDAPEQAPIRGLAIFIGGMLATLVVILTIVFQKQKAEDRAITSDFQTIN NLMHHFNDAEKFNDISQDTVTKFKNSEKLLITSTTAMSEKLSSRFEKLLLLHTSAQGIYA ELLELNEKNIRPIPQELIEMMDMITRNAYKLSSKREKWTKKVDVDEPFESLMQHILKIDE IAQLQPEQIESEASIRKPLYSKRIVQNLTLDSIIFRNALTYAVIMGAAIFVSLFFNIQRS YWIPLSAHTVLLGLTTIRMLDRSLARGLGTIVGTLLLSAILFFQPHLIVAVILMGLSAMM TEGFVAANYAFAVIFITTQVILLNGLASGNLSIDIAYTRIVDVLIGIVIAVIGVLIINRK NASTMLPTVIAEVVRKEAVIFQYLFSENKYQDTARDRTESLSLSVKMNNMTQVYNSANGE LFSSKEAIRYYYPSIFALEEISFMLMRAMQDKQRQRISEKQMGEYLVTFENVAKHFELRG SLNEKELTDLPQYNYLKSALMKLQDNCVATRKDVDYTNHQKTVDA >gi|312979656|gb|ACRM01000009.1| GENE 21 22905 - 23318 746 137 aa, chain + ## HITS:1 COG:BS_ydaT KEGG:ns NR:ns ## COG: BS_ydaT COG4876 # Protein_GI_number: 16077505 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 1 136 1 139 150 103 51.0 1e-22 MPWTMNDYPQTWKHLDELERKKAIDIANAMLKDGYKEGDAIPIATKQAEEWYKDASKEEL EELKHKHITQHQKDPSARPELNDEDVHVYYEDHEWKVKTEDAKQASDTFSTKKEAKQRAK EIADNRGTQVIEHQKDE >gi|312979656|gb|ACRM01000009.1| GENE 22 23475 - 24176 970 233 aa, chain + ## HITS:1 COG:SA2297 KEGG:ns NR:ns ## COG: SA2297 COG2357 # Protein_GI_number: 15928088 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 230 1 230 230 348 81.0 6e-96 MYVERKPSLYIEELRSEFKENIDKFKNGDEAFDKLVGFVELDHLYSSALKEISTKLDILD DNFNHIYKHNPIHHMERRVKEMTSLVKKLQRKGLTIDAETAKTNILDIAGIRVVCNYLED IYVIEKLLLKQEDVKLLKRKDYIQHPKENGYRSLHIVVSIPVFLADRVEVTPVEIQIRTI GMDMWASLEHKIRYKNNTNTEDYKDKLKECAVEISDVEAKMQTIHSEIQDKDK >gi|312979656|gb|ACRM01000009.1| GENE 23 24300 - 25175 818 291 aa, chain + ## HITS:1 COG:no KEGG:SH0571 NR:ns ## KEGG: SH0571 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 291 1 291 291 419 67.0 1e-116 MIKQNFKSQRYELKQFKGEHIEVAFAGNMDADKTIVFIHGAMMTYRIMLLFEPYFRENNL IFVNCPSRGRSSNIVREQHTLDDYSERINDVLSQVIETYGIKNLVIIGYSMGGMIGTRLL KFNTLPISHLVYLNSAARITPNQSMLSRLFTSNSKRDHFKDEMIAFQNLPQYILKKSFHN KNNSIRNLFSYIAPIKTIITDIIYSTNADYLPDIEEIEQFPKLLFISGEDDEIIPYTDSQ ETMKVYEKYGGEVNEVIYSGIGHIDFPAVLDNLPNGTIGIIDHIKQWIQEE >gi|312979656|gb|ACRM01000009.1| GENE 24 25267 - 25989 490 240 aa, chain + ## HITS:1 COG:SA2296 KEGG:ns NR:ns ## COG: SA2296 COG0789 # Protein_GI_number: 15928087 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 235 1 235 254 203 47.0 2e-52 MSHYTIGELAKQSKVTIRTLQYYDRRGLLIAYRQTDSNRRYYTDEHVKQLELILVLKQLG CTLDEIKTLLDEDTNMNTLKTLLSLRKDALHSKVEVYSHTLNQIEKVDTYISEQSSASIN HLTDIDDAMKQEYKITYFRKKIWISAGILGIIQYSGLLLSLLGRSTKPLIVIFPILITYA IALTAIYLKKVLYLCPNCQHTFKPTLGAFVKAKHTPKTRQLTCPNCHQTHYCIEVYQNES >gi|312979656|gb|ACRM01000009.1| GENE 25 26106 - 26786 555 226 aa, chain + ## HITS:1 COG:SA2295 KEGG:ns NR:ns ## COG: SA2295 COG1802 # Protein_GI_number: 15928086 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 5 225 5 225 226 287 71.0 1e-77 MEQHYPKQWKNRMTTGESIAAELRFQIVNSTLEPDTLLTENQVAKQFDVSRSPVRDAFKL LQTNQLIHLERMGARVLEFGEQEKKELYDLRLMLESFAFSKLKHMDRKKVIKEMKKHLEM MKVAVQFEDAESFTQHDLQFHEALIHASRHHYLQTFWNHLKPIVEVLVLCSMRERMRTNK EDFDRIHRNHSVFIEAVERYDTDTLREAFHLNFDDVGKDIESFWLQ >gi|312979656|gb|ACRM01000009.1| GENE 26 26809 - 28347 1869 512 aa, chain + ## HITS:1 COG:SA2294 KEGG:ns NR:ns ## COG: SA2294 COG1070 # Protein_GI_number: 15928085 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar (pentulose and hexulose) kinases # Organism: Staphylococcus aureus N315 # 1 511 1 511 517 875 80.0 0 MKYMIGVDIGTTSTKSVLYDEHGQFITKHHIGYPLHTPNVDVSEENPDELFDAVLMTVKH VVRESGVRKEDIKLISFSAQMHSLIALDSQHERLTESIIWADNRANQYADLINEQCGGHD IYKRTGTPIHPMSPLSKIFWMKHEQPDIYQNTAMFADIKTYIFYQLYGEYVMDHSMASAT GLFNLQQLDWDQEALELLGISASQLPQLVPTTHILKGMKKRYATLMGIDENTPVVVGASD GVLSNLGVNSYKKGEVAVTIGTSGAIRTVIDKPRTDYKGRIFCYVLDEEHYVIGGPVNNG GVILRWLRDELLASEVETAKRLGVDPYDVLTKIASRVKPGADGLIFHPYLAGERAPLWNA NARGSFFGLTLSHQKEHMIRAALEGVLYNLYTVYLALVEVMNETPNTIKATGGFAKSEVW RQMMADIFDTDVIVPESYESSCLGACVLGLKALGDIEDYSIIENMVGTTHAHQPNQDTVN VYQQLVTIFINLSRTLEDRYEEIADFQRKHMN >gi|312979656|gb|ACRM01000009.1| GENE 27 28391 - 29746 1929 451 aa, chain + ## HITS:1 COG:SA2293 KEGG:ns NR:ns ## COG: SA2293 COG2610 # Protein_GI_number: 15928084 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism # Function: H+/gluconate symporter and related permeases # Organism: Staphylococcus aureus N315 # 4 451 5 452 452 617 86.0 1e-176 MGTIWTLASVVIGIVLLLTLIIFLKLNTFISLIITSIVTAILLGMPLNKVMETIEAGMGG TLGHIALIFGLGAILGKLLADGGGANRIADTLIDTFGQKHVQWAMLIAAFIVGIALFFEV GLVLLIPLVFTIAKRAKVSPLKLGLPMVTALSVTHGFLPPHPGPVVIAKELKANIGHVLL YGIIIAIPVTLIAGPIFNTFAQKLIPSAYTREGDISALGSQKEFKASEMPSFGLSILTAV LPVILMLLSTVVQLVTGHENAENLFEQIIYFIGTAGTAMLISVIFAIFTMGLHRGRKMDD IMKSVTNAIYPIGMMILIIGGGGTFKQVLIDGGVGDTIAKLFEGSTLSPILLAWIVAAVL RIALGSATVAAISTTGIVLPLLQHSDVNVALVVLAIGAGSVILSHVNDAGFWMFKEYFGL TVKETFLTWSLLETIISVSGIIFILFISLFV >gi|312979656|gb|ACRM01000009.1| GENE 28 29905 - 30771 1327 288 aa, chain + ## HITS:1 COG:SA2288 KEGG:ns NR:ns ## COG: SA2288 COG1210 # Protein_GI_number: 15928079 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-glucose pyrophosphorylase # Organism: Staphylococcus aureus N315 # 1 288 1 288 288 478 87.0 1e-135 MKQIKKAIIPAAGLGTRFLPATKAMPKEMLPILDKPTIQYIVEEAARAGIEDIIIVTGKH KRAIEDHFDNQKELEMVLEEKGKTDLLEKVHYSTDLANIFYVRQKEQKGLGHAIYTARQF IGNEPFAVLLGDDIVESEEPAIKQLMNVYEETGHSVIGVQEVPEHVTHRYGIIDPLEKQG RRYEVKQFVEKPEQGTAPSNLAIMGRYILTPEIFDYLKTQKEGAGNEIQLTDAIERMNSA VPVYAYDFDGNRYDVGEKLGFVKTIIEYALKDPKMKDELITFIKHLGL >gi|312979656|gb|ACRM01000009.1| GENE 29 31214 - 31609 422 131 aa, chain + ## HITS:1 COG:SA2278 KEGG:ns NR:ns ## COG: SA2278 COG0494 # Protein_GI_number: 15928069 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 1 127 1 127 130 179 74.0 1e-45 MKKNINVVGAVIYSENKILCAQRNENMSLPLKWEFPGGKIEKGETEEEALIREINEEMKC DLTVESKIIAAEYEYDFGIVNLTTYKCTLNNEMPTLTEHKEIKWLEPDELTELDWAPADI PTVEIIVKGKN >gi|312979656|gb|ACRM01000009.1| GENE 30 31609 - 34440 2256 943 aa, chain + ## HITS:1 COG:Cgl1126_2 KEGG:ns NR:ns ## COG: Cgl1126_2 COG1061 # Protein_GI_number: 19552376 # Func_class: K Transcription; L Replication, recombination and repair # Function: DNA or RNA helicases of superfamily II # Organism: Corynebacterium glutamicum # 209 941 17 781 789 505 38.0 1e-142 MEDKLILNLKQSLKKGFIDKNLTNESNLTPKLLVNNNNQNVLTSIINELEKCCSFFISVA FITESGLASLKTIFNDLNHKGIKGKLITSNYLGFNTPKMYRELLKLENIEVRLTDVEGFH AKGYIFDHKDYSSMIIGSSNLTSTAMKINYEHNILLSTHKNGELIYNLKNQFEVLWENSI SLNSQWINDYEEIFESKLYKDFLKINREQNRLVNRFKKSNEIQPNIMQEEALMSLKNLRN SGENKGLVISATGTGKTILCALDVRNYNPQKFLFIVHNEGILKKAMKEFKKVLPFNQETD FGFYTGKHKDIEAKYLFATIQTLSNNNNYEVFNKKEFDYIVFDEAHRTDASTYQIIMNYF QPNFMLGMTATPERTDEGNIFELFDNNIAYEIRLPKALESDILCPFHYFGVTDYIHNGVT SDDYTELKDLTSEERIKHIIEKTNYYGYSGSQLKGLIFVSRKEEATEIAEKLSLNNIPSK ALIGSDTQNKRTKVINELVNGKINYIVTVNLFNEGIDIPEVNQIVMLRSTQSSIIFTQQL GRGLRKSSEKEFVTIIDFIGNYENNYLIPIALSDNQSHNKDDYRKFLTEPNKLSGVSTIN FEEIAKKKIFKSIDHANLNSTKIIKEAFESVKERIGRTPMLMDFITQNSIDPKVIISKFN NYYLFLKKYNYIEKDFNKDAVKNLTFLSKELLPGLKQADYKILESIISENNYASIPKDDL ETSLNILSLNYFGKNENERYGSPIIDIKTKRLSKTFSKYLEDEDYQAFVLDILAIAKYYN KKIQDYGNDLILYNQYTRLDFLKLVNWRNHEKNMANNIYGYRILDEHIPLFITYHKSEDI DDSIKYEDHFLNQEEFAWVSRKNVSLKNKEIKQIINHKEDGKTIYIFVKKNDSEGSQHYY LGEAEYVKGSANETTNVTEDKIVTMNFIMKTPIRDDIYRYLVN >gi|312979656|gb|ACRM01000009.1| GENE 31 34772 - 34963 305 63 aa, chain + ## HITS:1 COG:no KEGG:SH0583 NR:ns ## KEGG: SH0583 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 63 1 63 63 97 84.0 1e-19 MRKVIEGVIFSEEGSYDIYLKTGVNQGLISDIKDGYMTIDSMSYLDAERLYFYGLERKTL VTN >gi|312979656|gb|ACRM01000009.1| GENE 32 35120 - 35401 404 93 aa, chain - ## HITS:1 COG:no KEGG:SH0584 NR:ns ## KEGG: SH0584 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 8 93 3 88 88 108 72.0 4e-23 MSVIAKDFSPLVQALRQKVGRTSFSFRFEDLFTKEEWLNMSVKERTRQEREFIARIDHIP NIRMPFASEDGYKFKLYNQEYQYNEVKKNFKSL >gi|312979656|gb|ACRM01000009.1| GENE 33 35554 - 36249 189 231 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163797523|ref|ZP_02191474.1| 50S ribosomal protein L9 [alpha proteobacterium BAL199] # 7 196 5 197 259 77 28 5e-13 MAKLTDTVAIITGASSGIGEATTKRLAEEGAKVVLAGRNDEKLQRVAEHLNEGDYLITPT NVMYRDDVDALVENAIAKFGKIDIFVNCAGINLSSKITDYKVDDWDKMVDTNIKGLLYGL NAVLPHFEEQSSGHIVNMASISGFEVNKTSALYSATKSAVLRIVEALEKELARTGIKSTS ILPGMVDTPMTEGYDFGDRKKLDPENIADAVIYAVTQPAHVNVNEVVVRPV >gi|312979656|gb|ACRM01000009.1| GENE 34 36374 - 37606 1560 410 aa, chain + ## HITS:1 COG:BH2678 KEGG:ns NR:ns ## COG: BH2678 COG0624 # Protein_GI_number: 15615241 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Bacillus halodurans # 2 404 18 421 427 458 56.0 1e-129 MEQRLFELLDVLVKYNTESPPGRNTDPLQDDIEHLLKTLNFDIQREHLYENDSVIVATLK GEDEDAPKLILNGHVDVANVDDDSNWQYPPFQLTEKEGWLYGRGVSDMKGGMASLFYVLE KLHQEGRRPKGDIVVQSVVGEEVGEAGTKRACEIGPHADLALVLDTSENMALGQGGVITG WITVKSKNTIHDGARNQMIHAGGGLFGASAIEKMTKIIQALNELEQHWAVMKHSPGMPPG ANTINPAVIEGGRHPAFIADECCLWITVHYLPNESYEDVTKEIEAYLNRVADADIWLREN PLQFEWGGESMIEDKGEIFPSFTIPLEHPGFKQLQDAHYHVHHSEMKHGMSTTVTDGGWT AHFDIPTILYGPGSLEEAHSVDEKIEAQELQTYSDVLYTFLKHWYEHPEK >gi|312979656|gb|ACRM01000009.1| GENE 35 37663 - 39828 2317 721 aa, chain - ## HITS:1 COG:BH1392 KEGG:ns NR:ns ## COG: BH1392 COG0855 # Protein_GI_number: 15613955 # Func_class: P Inorganic ion transport and metabolism # Function: Polyphosphate kinase # Organism: Bacillus halodurans # 7 687 11 699 705 754 56.0 0 MQTQLGDNDISLPKYYNNRELSWLDFNYRVLQEAYDNNNPLLEKLNFVSIFSSNLDEFFM VRVAGLKDQVKMGFDKPENKTQMTPQEQVDAIQEKAKKYVNMQYERYNELIEELRNYDIV MCKPENLSDSILSKLERDFKLTILPTLTPLGIDAYHPFPKLNNKSLNIFVDIDTDDAINS AIVQIPSLIPRFLTYNEGSKQYVVMVEDVITHFINHLFTGYEVLNTFTFRITRNADLTIH EDGAEDLLIEIERFLKERKSGSAVRLEVDNRTASIEDLGWLTETLEVDEQDVYLLNGPLD LTFIFGLVDHLSHKLKYLTYDKYTPQIPRSLGNNNVYDLALKRDVFFHHPYESFEPIVDF IREAAEDPNTIAIKQTLYRVSKDSPIIKSLKEAAENGKQVTVLVELKARFDEENNVHWAR MLEDAGCHVIYGMTHLKTHSKIALVVKRIGGKLTSFVHLGTGNYNDKTAKLYTDMGVITT DTLIAEDAINFFNYLSGYSVKPEYNKLIVAPFDIRDVFIDRIDKEIASHRQHGNGKIMMK MNSLTDKAIIEKLFEASQAGVTIQLIIRGICCLKPGIPGVSENIEVVSIVGRLLEHSRIY YFYNNGDERIYLSSADVMTRNMIKRVEILFPVEDKEIGKRLVDFMNLQLSDNQKGRYQDQ YGEYHYVQNDLSPLNSQAYLMKEAVKYGKKLKKEATQPSGMPVVSKRRASWVNRLRNTLK K >gi|312979656|gb|ACRM01000009.1| GENE 36 39931 - 41472 1732 513 aa, chain - ## HITS:1 COG:BH1393 KEGG:ns NR:ns ## COG: BH1393 COG0248 # Protein_GI_number: 15613956 # Func_class: F Nucleotide transport and metabolism; P Inorganic ion transport and metabolism # Function: Exopolyphosphatase # Organism: Bacillus halodurans # 3 510 4 511 518 327 35.0 4e-89 MEERIGLIDIGSNTIRLVIFRFSKDAGLNELLNIKTPARLSQYLTKENKMSQEGINVLIE ALRSFKSVSEKFKVKALHPIATAAIRQSENKDDIVKRVKDELDIEISIIPEKEEAYYGYY AITHTTEIENGVSVDIGGGSTEVTLFKDKELFESHSFPFGVVTLKHKFFDGKDHNDKGAI KDMEKFLSQQFSTLDWLKDQEIALVGVGGSARNVARIHQSEHAYPISGVHNYTMSDKDID EVYNMIRKSSRDELNNLDGLSRDRADIILPAVSVFKTLYKKIDAKQFTFSRNGLREGYII KQIRSRYPDVFDKHNVHKEAIYFLAHDYHIEEHSSQGRLKLAQSLLKQLMDLGDLKINDT EQRLFEEATYIYYLGRFIDSDSSSPHTYYIIANSMINGYTHKDRVKLALLASFKNKSLLK FYCKETDWFSNKEIETIQALGGIIKFVNALNISQTSFVQDVTLKETKKSNDDYELTVHYT EGEPIAEKYQALRQKKHIEKILKGSVSIVFTKS >gi|312979656|gb|ACRM01000009.1| GENE 37 41688 - 42506 222 272 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739489|ref|ZP_02146899.1| 50S ribosomal protein L17 [Phaeobacter gallaeciensis BS107] # 4 250 1 238 242 90 27 7e-17 MKRLEDKIAVITGASTGIGQASAKVLAKEGAHVLALDISDELEKTVDDINQEGGKATAYK VDISQDQQVKDFAEKVKQDYGHIDIIFNNAGVDNGAGRIHEYPVEVFDKIMSVDMRGTFL VTKFLLPLMLDNGGSIINTASFSGQAADLYRSGYNAAKGGVINFTKSIAIEYGRENIRAN AIAPGTIETPLVDHLAGTSEDEAGKTFRDNQKWVTPLGRLGQPEEVGKLVAFLASDDSSF ITGETIRIDGGVMAYTWPGEMLSEDKWKHSVE >gi|312979656|gb|ACRM01000009.1| GENE 38 42894 - 43970 1505 358 aa, chain - ## HITS:1 COG:SA2244 KEGG:ns NR:ns ## COG: SA2244 COG1363 # Protein_GI_number: 15928034 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 538 74.0 1e-153 MKESIELLKTLTDVNGIAGYEYQVKEKMRDYLTPISDEIIEDGLGGIFGKKESKTGSKSL MLAGHLDEIGFIVTKIDNNGFIKFQPIGGWWSQVMLSQKVTITTDDGKEIRGIIGSKPPH VLEPDARKKSIDIKDMFIDIGVRSKADAEQYGIEIGNMITPYSEFEQLANGKYLTAKAFD NRYGCALAIDVLNNLKDESIGINLYAGGTVQEEVGLRGAKVAANKINPDLAIAVDVAVAY DTPGMAQYGSDTAIGDGPVIILMDASNVAHQGLRQHIKEVAKKHYITVQWDTTPRGGTDA GSIHVANDGIPTIAIGVALRYMHSNVSVLHTDDYENSVRLITEIVRSLNDQTYNQIKW >gi|312979656|gb|ACRM01000009.1| GENE 39 44132 - 44593 642 153 aa, chain + ## HITS:1 COG:SA2247 KEGG:ns NR:ns ## COG: SA2247 COG4808 # Protein_GI_number: 15928037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 2 153 1 151 151 95 41.0 3e-20 MMKKVLTLFVLLVLSVSILGACTQSRSKTYEGDIEGKHVLTTLTYKNNKVIKQSTVSILK YDDLGMSKQEGKKSFKDYRPLKGKKGVTYTLSSKHQKIVENIDIDYNKANLKDVSRYFAL AHYSKNYKKVTMDGTVKELKKIGFQKKSNMNEE >gi|312979656|gb|ACRM01000009.1| GENE 40 44647 - 46227 2196 526 aa, chain - ## HITS:1 COG:SA2248 KEGG:ns NR:ns ## COG: SA2248 COG0069 # Protein_GI_number: 15928038 # Func_class: E Amino acid transport and metabolism # Function: Glutamate synthase domain 2 # Organism: Staphylococcus aureus N315 # 3 525 2 524 525 807 72.0 0 MTTLLTVMQFIVNILIIMVLLSILMVGLFLLFKDKRQEQHSVLRNFPVLGRVRYFSEKIG PELRQYLFANDTEGKPFSRNQYTDIVLAGKYHSRMTSFGTEKNYEEGFYIRNAMFPLQKS ELQIDNHSMISTFIYSIDNERLFKREEHRENKHIDPYYLSDDHAVIIGEELAHPFKVKRL VGQSGMSYGSLGGRAITALSQGLARAGTWMNTGEGGLSEYHLKGGCDIIYQIGPGLFGVR DKDGGFSEEAFLNVANYKEVKAFEIKLAQGAKTRGGHMEGNKVTEEIAKIRHIEPYQTVN SPNRFDFINNPKELLEFVAKLQKLGQKPVGFKIVVSRVDEVEALVQEMINLAIYPNFITV DGGEGGTGATFQELQDGVGLPLFTALPIVTGVLERYDARKYVKIFASGKLITPDKVAIAL GLGADLCNIARGMMISIGCIMSQQCHLNTCPVGVATTDPKKEKALIVEEKQYRVTNYVTS LHEGLFNVAAAVGVKSPNEITEDHIVIKRKNGHIEDIASYKLKLIQ >gi|312979656|gb|ACRM01000009.1| GENE 41 46411 - 47193 684 260 aa, chain + ## HITS:1 COG:SA2106 KEGG:ns NR:ns ## COG: SA2106 COG1266 # Protein_GI_number: 15927893 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 70 256 56 241 245 88 32.0 1e-17 MKKEKDVITQVVSKNRWSSPKIIKKDFLLIPLFIFFQILTPIIIVFGVLGVTAMVTQQPP PSYLYNVMLSLSFVIAQFIVLGLFFTLHKFYIASVVRRQYRIAIHHYLKFIIIIVMVSVM LYYGFNALAHILPHPFGYVDTQAQRRLEGLFIHPSALIFTFISVVLLRPLIDELLFRHLL IHELGKTFNLLVMMIVSVLIETIVQVYDLISILEAIPYMIISIGAVMVYMKSGKNLVASY LYHSTVQFIIFIITMIDKLV >gi|312979656|gb|ACRM01000009.1| GENE 42 47216 - 48025 751 269 aa, chain + ## HITS:1 COG:SA2106 KEGG:ns NR:ns ## COG: SA2106 COG1266 # Protein_GI_number: 15927893 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 93 266 70 243 245 131 45.0 1e-30 MTSEYNDTYYQTSEQRPIRNEFDSKRIVKRDFWLIPTYLVMNIVFPLILTFIVMAMISGI TGGHISESKFTKYYLGYAQVFTLIGQCLVLLVFYLMHRKTIIPIAISRFKALKKHIPLII IVMVALYVLQGVYGYLVEFLPKQYQFDDTENNKMIIKMFEINWLWPVLFLDIVIITPVVE ELLFRHLLIHELGKKLTYDVMYVVSVLGFAGLHMTSASSPFEVGPYIIMATGFVVAYHLS GRNLAMTITLHMINNFVSFIAIMMSIIWG >gi|312979656|gb|ACRM01000009.1| GENE 43 48155 - 48817 865 220 aa, chain + ## HITS:1 COG:SA2243 KEGG:ns NR:ns ## COG: SA2243 COG4619 # Protein_GI_number: 15928033 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 220 1 220 220 293 67.0 1e-79 MLLEVKHLTYKADQRTILNNINFKLDQGETVAVVGPSGSGKSTFLKQLNNLISPTEGELL FKGKPYDEYSPEELRSKISYMMQQSELFGTTVEDNMAFPALTHHDQFDEDKANDLLNKVG LSNYSLDSKVEHMSGGERQRIAIARQLMYQPEILLLDESTSALDTQNKEKIEDIIFKLAD EGVAILWITHSNDQSMRNFQRRITIKDGQITNEEVLSHNE >gi|312979656|gb|ACRM01000009.1| GENE 44 48810 - 49586 1023 258 aa, chain + ## HITS:1 COG:SA2242 KEGG:ns NR:ns ## COG: SA2242 COG0390 # Protein_GI_number: 15928032 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, permease component # Organism: Staphylococcus aureus N315 # 1 258 1 258 258 364 84.0 1e-101 MSNTALCLTALLLLIPIIISYKEGLHIIKDLVVASIRAVVQLLILGLILEYIFKIDQVWI LLIAVLVIIINASWNTIHRASPVMHHVFWISFVSIFISTAIPLACTVLAGAIDFKANDVI PIGGMLANNGLIAINLAYQNLDRAFVRDIDDIESKLTLAATPKLASKGAIRESIRLAIVP TIDSVKTYGLVSIPGMMTGLIIGGMAPLQAIKFQLLVVFIHTTATIMSALIATYLSYGQF FNARHQLVARTTNIKDNN >gi|312979656|gb|ACRM01000009.1| GENE 45 49718 - 50893 1276 391 aa, chain + ## HITS:1 COG:SA2241 KEGG:ns NR:ns ## COG: SA2241 COG2814 # Protein_GI_number: 15928031 # Func_class: G Carbohydrate transport and metabolism # Function: Arabinose efflux permease # Organism: Staphylococcus aureus N315 # 1 390 1 390 395 460 75.0 1e-129 MSVMRVATFIISVFIVGMVEMMVAGIMNLMSGDLGVSEAIIGQLVTLYALTFAICGPILV KLTNRFAVRPVLLWTLVAFIIGNAMIAMAPNFTILVIGRILSSAAASLIIVKVLALTAML TIPKNRGKMIGVVYTGFSGANVFGVPIGTMIGDAIGWRFTFLFIIIVSVIAGVLMMVYLP STSELNQVQRQWGSTSNKQLNTSKILRPAEVVKYLTITFLILVANSVTFVYINPLILNHG HQMGFVSLALLVNGIAGVIGTSLGGILADKLSSKRWLIIAFSIFIVMMLIMNLILHTVTL LLIGLFIWNIVQWSTNPAIQSGMIEHVEGDTSQVMSWNMSSLNAGIGFGGIIGGLVVSNI SVQAVTIVSAMVGAMGLIIVLSLKNMSYMRN >gi|312979656|gb|ACRM01000009.1| GENE 46 50942 - 52291 1306 449 aa, chain - ## HITS:1 COG:SA2240 KEGG:ns NR:ns ## COG: SA2240 COG2272 # Protein_GI_number: 15928030 # Func_class: I Lipid transport and metabolism # Function: Carboxylesterase type B # Organism: Staphylococcus aureus N315 # 4 449 3 450 450 462 52.0 1e-130 MTLIKTHGGDIKGYTKGKINYFLGIPYADKPINEHRFKHSKCLKTWEKTIEATSFKSIPP QPHNKLETFFSSHAQLFNQSEDCLYLNIWCQNNQYKNKPVIIYFYGGGFVNGHGSQELYT PEHIVAQHDVIVITFNYRLGALGFLDWSYFNSDYNKNNGLSDQINALKWVHTFINYFGGD SNNITLMGQSAGSMSIMALMQRPELDKYYHQVMLLSGTLRLDSHLLGQKKAAHFAYLKDA YFPKKRMTHLTTLDILSLMAYDEASRGKSKGLELIYAPIQESNMSRPLSQFTKPVVIGTT KEEGNIYIRNESRKLSSERFVEVMKLNDIHLHISQAQTGKDQARMVTTHYFETPAISFLN QLDNNPHCWKLRFDWCLSNASPFQSAYHILDLVFWFGKLEILKAHGVNSLEHERHLSKHM IDDLIYFATYHTMPWPSYSPQTPYCYIYK >gi|312979656|gb|ACRM01000009.1| GENE 47 52393 - 54036 1743 547 aa, chain - ## HITS:1 COG:SA2239 KEGG:ns NR:ns ## COG: SA2239 COG0531 # Protein_GI_number: 15928029 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 3 542 5 544 545 810 82.0 0 MGKNKSDNKISLTQLVLLGLGSLIGSGWLFGAWEASSVAGPAAIISWVIGFIVIGTISYN YIEIGTMFPQSGGMSNYAQYTHGSLLGFIAAWANWVSLVTIIPIEAVSAVQYISSWPWDW AKPTQALMNNGSVSTIGLFVVYIIIIVFSLLNYWSVKLLTSFTSLISVFKLGVPLLTIIM LTISGFDAGNYGHSLNTFMPYGSAPIFAATTTSGIIFSFNAFQTIINMGSEIKNPEKNIA RGIGISLTLSAILYIILQSTFITSMPQSMIHSHGWHGINFNSPFADMAILLSINWLAILL YIEAVVSPFGTGVSFVAITGRVLSAMEKNGHIPKFLGKINSKYNIPRVAIAFNALMSIIM VTLFRDWGVLAAVISTATLVAYLTGPTTVIALRKMGPKLHRPFRGKLLKIMAPLSFVLAS LAIYWAMWPTTAEVILIIILGLPIYFFYEYKMNWKNTKKQIGGSLWIIVYLILLAAMSFI GSKEFKGMNWIHYPYDFIAIIVLSLIFYKIGSSSHFNSIYFKRAKKINKKMKDGSPEEAE AAAKGNE >gi|312979656|gb|ACRM01000009.1| GENE 48 54334 - 55389 1740 351 aa, chain - ## HITS:1 COG:BS_ydjL KEGG:ns NR:ns ## COG: BS_ydjL COG1063 # Protein_GI_number: 16077691 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Threonine dehydrogenase and related Zn-dependent dehydrogenases # Organism: Bacillus subtilis # 1 346 1 346 346 248 44.0 2e-65 MKAAVWYGQKDVRVEDREPKELKDNEVKVKVSWAGICGTDLHEYLEGPVFISTDKPDPFL GQKAPVTLGHEFSGIVEEVGKDVTKYKKGDRVVVNPTVSAREKEENLDLYDGYTFIGLGS DGGFAEFTNAPEDNVYHLPENVSAQEGALVEPTAVAVQAVKEGNLLFGDTVAIFGAGPIG LLTVVAAKAAGASKIFVFDLSEERLAKAKEVGATHVVNSGHTDPLEFVNEHTENGVDVTF EVAGVGVTLAQSVKVTRPRGSVVIVSIFAHEVNFDPMLLTNSGVKLTSTIAYTPTTFQQT IDLIANGSLDVKSVVTDKIELADIVESGFNQLVNDKSQAKILVKLNGDQKY >gi|312979656|gb|ACRM01000009.1| GENE 49 55836 - 57134 1523 432 aa, chain + ## HITS:1 COG:SA2237 KEGG:ns NR:ns ## COG: SA2237 COG1125 # Protein_GI_number: 15928027 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 408 2 409 410 591 76.0 1e-168 MTLSIKNLTKIYSGNKKAVDNISLNIEAGEFVAFIGTSGSGKTTALRMINRMIEPTEGSI EMNGKDVRSMNPVELRRSIGYVIQQIGLMPHMTIRENIVLVPKLLKWSKEKKDAKAKELI KLVDLPEDYLDRYPSELSGGQQQRIGVVRALAAEQDIILMDEPFGALDPITRDTLQDLVK DLQKKLGKTFIFVTHDMDEAIKLADKICIMSKGQIVQYDTPDNVLRYPANDFVREFIGQN RLIQDRPNMRTVEDAMIKPITIQADDSLNDAVNIMRNHRIDTIFVVNNKHRLLGFLDIED INQGLRQGKELIDTMQRDVYKVHIDSKLQDSVRTILKRNVRNVPVVDDHHTLIGLITRAN LVDIVYDSIWGEESETSHSSKTYSNEVERENERQNETQQHLTSQGTQRYHEDIMNGTDRE HTHHTDDTGVDR >gi|312979656|gb|ACRM01000009.1| GENE 50 57134 - 57769 910 211 aa, chain + ## HITS:1 COG:SA2236 KEGG:ns NR:ns ## COG: SA2236 COG1174 # Protein_GI_number: 15928026 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Staphylococcus aureus N315 # 1 210 1 210 211 278 80.0 4e-75 MRDFFAQYGDELVSKTIEHFYISIISLLIAIVVAVPIGILLSKTKRTANVVLTIAGVLQT VPTLAILALMIPIFGVGKTPAIVALFIYVLLPILNNTVLGVQNIDKNIIEAGTSMGMTKL QLMKDVELPLALPLIISGIRLASVYVISWATLASYIGAGGLGDLVFNGLTLYEPPMIISA TILVTCLALIVDFLLSLVEKWAVPKGLKVSR >gi|312979656|gb|ACRM01000009.1| GENE 51 57794 - 58732 1134 312 aa, chain + ## HITS:1 COG:SA2235 KEGG:ns NR:ns ## COG: SA2235 COG1732 # Protein_GI_number: 15928025 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Staphylococcus aureus N315 # 1 312 1 312 313 403 62.0 1e-112 MKNIKYIFIVLALSLVVLYGCGLPGLGDSNSKDSVKITATESSETKIVANIEKLMIEHYT NGEIKPIIIGNLGSSIVQHNALMRGDANMSAVRFTGTELTSVLDAPPTRDANKAMDESQR LFKKKYNQKYYHSLGFENTYAFMVTKETADKYHLEKVSDLEKYKDQLRLGMDTQWMNRAG DGYPAFQKEYGFKFKSARPMQIGLVYDALKNKKLDIAVGYSTDGRIAAYNLKILKDDRNF FPPYDGSPLATEKLIKDHPEIDKALTKLENTISTKEMQKLNYEADGKGKEPAVIAEEFIK KHNYFEDKKGGQ >gi|312979656|gb|ACRM01000009.1| GENE 52 58735 - 59412 829 225 aa, chain + ## HITS:1 COG:SA2234 KEGG:ns NR:ns ## COG: SA2234 COG1174 # Protein_GI_number: 15928024 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, permease component # Organism: Staphylococcus aureus N315 # 1 225 1 225 231 265 77.0 5e-71 MKGNLLSSLYEYYTLNFGYLMELFFKHLLMSIYGVLFACIIGIPIGILIARYSKIAWPVI TIANIIQTVPAIAMLAILMLALGLGPSTVVFAVFLYALLPIIKNTYTGITEVDYNIKDAG KGMGMTNNQVMRMIELPLSLSVIIGGIRIALVVAIGIVAIGSFIGAPTLGDIIIRGTNST DGTVFILAGAIPIALIAILIDIGLRLLEKKLDPTHRSSKQVQSLR >gi|312979656|gb|ACRM01000009.1| GENE 53 59476 - 60177 1072 233 aa, chain - ## HITS:1 COG:SA0253 KEGG:ns NR:ns ## COG: SA0253 COG1346 # Protein_GI_number: 15925966 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative effector of murein hydrolase # Organism: Staphylococcus aureus N315 # 1 214 1 214 233 237 67.0 1e-62 MADHLGITTPYFGILVSLIPYIIAQYFYKKTNGFFLLAPLFVAMVAGIVFLKVTGISYDN YKIGGDIINFFLEAATISFAIPLYKKRQVLRKYWLQIFGGIAVGTLVALILIYLVATLFH LGDQISASMLPQAATTAIALPVSDGIGGVKELTSLAVILNAVVISALGGKIVKMFKISNP IARGLALGTSGHTLGVAAAKELGETEESMGSIAVVIVGVIIVVIVPPLASLLF >gi|312979656|gb|ACRM01000009.1| GENE 54 60177 - 60632 642 151 aa, chain - ## HITS:1 COG:SA0252 KEGG:ns NR:ns ## COG: SA0252 COG1380 # Protein_GI_number: 15925965 # Func_class: R General function prediction only # Function: Putative effector of murein hydrolase LrgA # Organism: Staphylococcus aureus N315 # 15 134 5 124 145 132 66.0 2e-31 MAKNNSTTANTQGDKKAGKTYNFFIQVLTIVAVLFVSKIIESFIPFPMPASVIGLVLLFI LLSAGVVKLRQVEGVGTALTNNIGFLFVPAGVSVINSLPLLSQHPILIILLIIISTLLLL VSVGYVSQLFVTKTLFPTEEQNEKTRLKEEN >gi|312979656|gb|ACRM01000009.1| GENE 55 60867 - 61637 934 256 aa, chain - ## HITS:1 COG:SA0251 KEGG:ns NR:ns ## COG: SA0251 COG3279 # Protein_GI_number: 15925964 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 256 1 246 246 267 56.0 2e-71 MRTLIVDDEPLARNELHYLLNEISSFEIIDEAENIEETLEKLLCHTYDLVFLDINLMDEN GIDLAHKIRKMKHPPYIIFATAHDTFAVKAFELDAVDYILKPFELERIEQAVQKVKRLLN AKQQVQTLSDPIHSPQSQTSTSSYNNNQSVLPIEVDERIYVINLDDIVAISVNNGISTIT TLKKTYETTEPLNYYEKKLPKQLFIKIHRATIINKQYIESVEHWFNYTYQVTMTTNVKFQ VSRSFMKSFKQEIGLV >gi|312979656|gb|ACRM01000009.1| GENE 56 61638 - 63392 1440 584 aa, chain - ## HITS:1 COG:SA0250 KEGG:ns NR:ns ## COG: SA0250 COG3275 # Protein_GI_number: 15925963 # Func_class: T Signal transduction mechanisms # Function: Putative regulator of cell autolysis # Organism: Staphylococcus aureus N315 # 1 583 1 584 584 701 59.0 0 MFNLFILLLERVGLIIIIAYILMNINHFKTIMSAREKLRAQIELTILFSLFAIISNFTGI EIEHGKIISSNIYYHLNNEASLANTRVLTIGMSGLIGGPFVAIIVGIISGLSRIIIGGAN AYTYLFSSVIIALISGFYGYRTMRHNRYPTVLIGAMIGLINESIQMACILIFADDVSNAW SLVKFIALPMILINSIGTALFLSIILSTLKQEEQTRAIQTHDVLELANKTLPYFRSGLNE KSARPVAEIILRLMKVSAVAITNKTDILTHVGAGSDHHVAKKEIITNLSKEVIRTGQLKE ANSKEDIGCNNPNCPLREAIVVPLMTHGNVAGTLKFYFTDYSHITTSTKQLARGLADIFS SQLELGLAETQSKLLRDAEIKSLQAQVNPHFFFNAINTISALVRIDSEKARKLLLQLSQF FRSNLQGARNSTITLEKELQQVKAYLSLEQARFPDRFTIKYHIDDAYKQVLIPPFIIQIL VENAMKHAFKHRRKDNIVCVDVQYKEGLLKISVSDNGHGIAPEKLPSLGQISVASDTGTG SALENLNRRLTGLYGSNAKLHFDTSNHGTTVSCMIPYHLIKEER >gi|312979656|gb|ACRM01000009.1| GENE 57 63658 - 65058 1660 466 aa, chain + ## HITS:1 COG:SA2233 KEGG:ns NR:ns ## COG: SA2233 COG0477 # Protein_GI_number: 15928023 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 460 1 460 466 567 68.0 1e-161 MESSKEFKGDNRLLVGIIISVLTFWLFAQSLLNIVPTLQSSFNTDLGTINIAVSLSALFS GLFIVGAGDVADKFGRVKMTYLGLGLNIIGSLLLIITPVPWLLLIGRALQGLSGAFIMPS TLAIINEYYIGKERQRALSFWSIGSWGGSGICSLFGGLIASTIGWQWIFIISIALSILSF FLIKHTPETKNEPDTDTDNSGSKFDVIGLILLVITLLSVNVMVTQASDRGLLSPVILSLF GIFLIAGIFFVLREFKTKNPLVDFSLFKNKGYSGATLSNFMLNGVAGGTLIVVNTYYQSH LGFTSLQAGLISITYLVAVLVMIRVGEKLLQKLGAKKPLLIGSGSTFLGLLLLSLTFLPN LFYIISSIIGYLLFGIGLGMYATPSTDTAVDQAPDDKVGVASGLYKMASSLGNAFGVALS STIYGVCAAKMNLELGGLAGVLFNAIIVLTAFFVIFFLIPSKTKRA >gi|312979656|gb|ACRM01000009.1| GENE 58 65312 - 66244 1250 310 aa, chain + ## HITS:1 COG:SA2232 KEGG:ns NR:ns ## COG: SA2232 COG1893 # Protein_GI_number: 15928022 # Func_class: H Coenzyme transport and metabolism # Function: Ketopantoate reductase # Organism: Staphylococcus aureus N315 # 1 310 1 310 311 410 63.0 1e-114 MKIAIAGSGALGSGFGAMLYRQGNDVTLIDGWEPQATAVKHEGLHIDINGEDYHLNIPMY QDTEIPSDLQFDIVFLFTKAMQLESMLTHIQPHIHDTTIMVCTMNGLKHEDRIVNYVDKS RIVRGVTTWTAGLESPGHTHLMGSGPVEIGSLVPEGQNNVEVIYNLLEQAKLNPHKSEDL QQSIWKKICVNGTANALCTILECRLSTLNESEYARKLVYDITKEIVEVATVDDVHLNADE VYHYLIDLNDKVGPHFPSMYQDLINNNRRTEIDYINGAVARLGSEHHIDAPINQFVANMV HAKEEQRQAK >gi|312979656|gb|ACRM01000009.1| GENE 59 66345 - 66818 581 157 aa, chain + ## HITS:1 COG:SA0175 KEGG:ns NR:ns ## COG: SA0175 COG3477 # Protein_GI_number: 15925885 # Func_class: S Function unknown # Function: Predicted periplasmic/secreted protein # Organism: Staphylococcus aureus N315 # 9 153 10 154 164 135 44.0 4e-32 MKQSTKRVIMTGVIGGLLSGAVKMGWEALIPPRTPQREEEPPPMTLLHKLNLPDNVKHAT YRYNENDIPITVMGIHYGFSIANAIVYGLLAEKCPKVTTLRGTFFGILIHIAFHEYILPK LNLTPQVKDLPKEERISELLGHIVWMNTIDLIRNSHR >gi|312979656|gb|ACRM01000009.1| GENE 60 66874 - 67716 758 280 aa, chain - ## HITS:1 COG:SA1893 KEGG:ns NR:ns ## COG: SA1893 COG0706 # Protein_GI_number: 15927665 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Staphylococcus aureus N315 # 1 255 1 258 290 238 50.0 1e-62 MKKKWFLLPMSLIMLAGCDYSYKEAQHGLFYTVFVKPMDDLLHVLGHAFNENYGLAIIVI VFILRLILMPLMCIQVKNIHVIRGKTEVVKPEINKIQEKIKEAQSPEERRAANKLLMKKY NEYGINPFKNLIGTFPILIQIPILLGLYTSIKYPTSGGITQHPHFLWFNLMHTDIIMTII AAVMYFIQPLVNSIHYPKNERRSYYVMMVLSPLFITYASLHSASALSLYWAISATFLIIQ MHFAHSHYAKVGKIEGEKLRQRIEIKRQTTSETSSDTSNH >gi|312979656|gb|ACRM01000009.1| GENE 61 67814 - 69307 1267 497 aa, chain - ## HITS:1 COG:SA2230 KEGG:ns NR:ns ## COG: SA2230 COG1680 # Protein_GI_number: 15928020 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 5 480 8 482 498 376 43.0 1e-104 MRKKLIMIGMILLVGIIILSIAIKLKSSYLMFSPSSQSDIDNMIVNKMKDDHIPGMSVLI VKNNKTILNKGYGFSNIKKKSKVTPNTRFEIASNTKAFTGYAMMQLVEAHKINLNDKVSQ YIPGFYMKYNHKKVDITVDQLIAQTSGISGDITNDDNITKDTNSLEGLVHSIKGRNLDAK PGKQFEYSNMNYDILGLIVQKASHQSYANYLSTHLFTPLHMTQSTVKESNMKKNNDAQGY VIKKGKAYADSPEFNLGDNPAAYMMTNTKDLASWLKFQLNPPKKVASLVQLTHQPKVKAI DNSQDVHYAAGWFIDDNHSETIVYHPGTLENYSSYIILNPKKDYGIVVLANSYSKNVAEL AQHLNTQMSNGQHIKTLQYLINQWNIVFIIITIILLIAVASVFLIIYRLIFKFKSIYFKT MSGGLLIKISMMMLTFTLILAILHLLPILLLSNSDWRFMMSWLPLQAKITLFSFVLLLTS LWSYFILKMITLSKRSI >gi|312979656|gb|ACRM01000009.1| GENE 62 69579 - 71405 2077 608 aa, chain + ## HITS:1 COG:SA2229 KEGG:ns NR:ns ## COG: SA2229 COG0531 # Protein_GI_number: 15928019 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 608 1 609 609 922 79.0 0 MFTQFKRLIIGKPKKNRDLKNEKISNFKALAILSSDALSSVAYGPEQILITLSVVGAIAS WYTLPVAAAVLVLLAALILSYRQIIYAYPKGGGAYMVSKTNLGEKWGLLAGGSLLVDYIL TVAVSISSGADAFVAAFPGLYHHKVFIACLLVLFILIMNLRGLTESATVLSYPVYLFILG LIVMIVIGTWKVATGQTEPHMHATVGTAVPGVTLFLLLKAFSSGASSLTGVEAISNAVTN FKDPGSKNAVKTLITMGMILAFLLVGIVGLAYWYGIMPQTETTVLSQLAMNILGHNVGYY FVQVTTVMILVLAANTGFTAFPMLAASMSKDKYMPRMFNVRGDRLGYSNSIITLGICAML LIIFFHGKTENLIPLYAVGVFIPFTLAQYGMVLKWVRGREKGWSTKLIANAIGGTITFIV FMIFLITKFSQVWPILIFLPIVVYIFTRINRHYKDIAEQLSTTKIVQDMPVVDKNLAIVP VNTITTALNKSIYYAHMIADDVIAVHVSFGDQTDNLFIEKWNKQYPDIRLVTLHSEYRSV IRPISRFIDKINKKANAQNYVITVVVTEFIPKKPWHNFLHNQTSLRLKMHLFYQKNVILA TVPYKLQK >gi|312979656|gb|ACRM01000009.1| GENE 63 71459 - 73555 1785 698 aa, chain - ## HITS:1 COG:SA2228 KEGG:ns NR:ns ## COG: SA2228 COG0025 # Protein_GI_number: 15928018 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 1 698 1 692 692 878 65.0 0 MELLEAFLLFILAVIISSIIYHRFPNIPTAFIQIALGVALFILPIPLHFKFEPEVFMMAV IAPLLFVEGTHVSREKLLEYRKPVVLMAMGLVFTTVIGVGFFIHWIWPNLPMPAAFAIAA ILCPTDAVAVSAITKGKVLPKGSMAILEGESLLNDAAGIISFKIAVTALVTGSFSAINAI GQFLLSTFLGILVGAIIGALVVSLRVYLTSNKGLKDSNTLTFIQLLTPFVIYFIAEEVHA SGIIAVVVAGLIHGLERDRLIRAQTELQMNYNQIWNTLSYALNGFVFVVLGYIVPEVILE IVRNEPQNLVFLIVIAFLIAFAIYIFRFIWVYVLFKDFYYPKNVEAYLDDEEETQPPKRS RYAFIMTLCGIHGTISLSMALTLPFIINGNQNFDHRNDLLFIASMMVLISLIFAQMILPF ITPSKQHSHFKGMSYQSAKIFMIQHVIRTLKEKAATHKDIDYRPILNQYFNELSFLIDME SDDKNTKELHRLRDIAEEVETETLQQLIKQERITKKDLSDYRKVMEFTQSFREMSFIEKL NRFSKLIILRFKARKDSHHSVNQSSFEQQRYTDRKELRNNFKKVQHIIRIVNRQVTLRLQ EEQNSTNVLEVSLIINQYYALSRTLRQHHNRKHQREENKFMHELNTQQQYDAKLDALYTQ RQILDELISKNKVTNEIATQLRENINYNEIVLANELNH >gi|312979656|gb|ACRM01000009.1| GENE 64 73688 - 75088 1783 466 aa, chain - ## HITS:1 COG:SA1519 KEGG:ns NR:ns ## COG: SA1519 COG1113 # Protein_GI_number: 15927274 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 449 1 448 453 536 65.0 1e-152 MARQLERELSNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLITYLIIGIVLFAFMRAL GELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLSWIVSSMSDLTAMGQYFSFWFPNVP HWLTVLFIVLLLISFNMLGAKLFGELEFWFSIIKIITIIAMIIVGLVMIFFSFKTSYGHA SFSNLVNHGGIFPNGPAGFLMSFQIAVYSFIGIELIGVTAGETKDPRTVIPKAINNVPVR ILLFYVGGLLVIMSVIPWNKINPDASPFVMLFSMIGLPFAAGLVNFVVLTAAASATNSGI YSNSRILFGLSKQGLGPKMLSKTNHHSVPYLSMLVSSGTLLLAALLNFIFPDAIQLFIYV TTLSTVLFIVVWAMIIISYIIYVRKNPEEHKHNKFKLLGGKAMAYVILAFFLFVFVLLFF SADTRVSIFISPIWFIFLFLFYKKYKKNAEYLAEKTRQQPRESINH >gi|312979656|gb|ACRM01000009.1| GENE 65 75396 - 76208 867 270 aa, chain + ## HITS:1 COG:SA2225 KEGG:ns NR:ns ## COG: SA2225 COG1409 # Protein_GI_number: 15928015 # Func_class: R General function prediction only # Function: Predicted phosphohydrolases # Organism: Staphylococcus aureus N315 # 1 264 1 263 268 322 55.0 6e-88 MRIGAISDLHIDRHPKLKSNVYLETLIKVVQHREVDLLLIAGDISNYFRDSYQFIKDLKT ALHIPVLFVPGNHDYWKVEDETTSQDIYDFYRTKPECLLDHPYVINDNWAIVGHTAWYDY SYADKKFEETRLKKGKYYGATWQDKVKIDWNEDDTILSKKAAKHVKQALEQLQDKQIILM THIVTHSKFVVPTPHRIFNFFNAFIGTSDFDQLYQQFPIKYSIMGHVHFRKSLVENNITF LCPCLGYKREWRTADIYSEMNHALMDFVIE >gi|312979656|gb|ACRM01000009.1| GENE 66 76261 - 76872 607 203 aa, chain - ## HITS:1 COG:SA2224 KEGG:ns NR:ns ## COG: SA2224 COG4990 # Protein_GI_number: 15928014 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 203 1 204 218 278 69.0 4e-75 MNKKLLSVTPKSQLFPIPMIMGCEGVSAAMLLQYNHHNIKATDIMKHWPTHPNNPYKGYV GHHLLVKFGHHQTIFPSAYVPYLQTFDSRIVDGTGTNLEELETVIDQGQPVLMYHTSLGQ KPSRKTFKFDNHTRQLVSNIHVTLLIGYDDTHYYYIDPLWSHFLRKVIVPALVPNRFQII KIKKEFMERSFNAPGKKCIYVKP >gi|312979656|gb|ACRM01000009.1| GENE 67 77412 - 78077 789 221 aa, chain - ## HITS:1 COG:SA0249 KEGG:ns NR:ns ## COG: SA0249 COG2846 # Protein_GI_number: 15925962 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Regulator of cell morphogenesis and NO signaling # Organism: Staphylococcus aureus N315 # 1 220 1 222 224 253 56.0 1e-67 MVTKDSIVANVVTDFPLSSDVFRKYGIDFCCGGNISIKNAVKNKKVNVDTIIEEINHLPV HSTGNINVKYLDAPSLIQYIQSRYHETMREEFKNLSPYVTKIAKVHGPHHPHLLQLQELY RQYRDGMLEHMDKEDNHDFPLLIKIARGEQVKNAHQVIESLVEDHTQTGHLLEEMSALTN QYQPPSEACNTWRLVYTRLEHLERETHEHVHLENHVLFNKF >gi|312979656|gb|ACRM01000009.1| GENE 68 78303 - 79499 1128 398 aa, chain - ## HITS:1 COG:SA2222 KEGG:ns NR:ns ## COG: SA2222 COG0477 # Protein_GI_number: 15928012 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 4 397 3 399 403 432 66.0 1e-121 MHNSTHTKLPMLLLIVLGTMTAFGPMIIDMYLPALPAIQQQFNTSTSSIQLTLSFAMIGL ALGQFVFGPLSDVLGRKRIALIILSVFVLASCSAIFITTFPIFLLIRLVQGLTAGGIIVI AKAFAGDYYQGNTLAKFLASLMVVNGIVTILMPLLGGLSLSLGSWRIIFVILTAISMIML GGVTFNMPTTHHSEHVTSNFKHIFSDFGRLLKRPKFIIPMFLQGLTYVMLFSFSSASPFI TQKIYHMTPQQFSVMIAINGIGLIVVSQIVALLVERIHRFKILIYLTFIQLIGVLLIVFT LILQGPLWLLLVAFFLNVCPVTSIGPLGFSMAMEERTGGSGNASSLLGLFQFILGGLVSP LVGLKGQYNVMPYITVIVITAILIVLLQFLYFKKYQRI >gi|312979656|gb|ACRM01000009.1| GENE 69 79640 - 80359 1066 239 aa, chain - ## HITS:1 COG:no KEGG:SH0630 NR:ns ## KEGG: SH0630 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 239 1 261 266 131 57.0 2e-29 MKRTEKYKDSYQYDDQYQQRNQKSREHQQRQQRRQNEENYRRNEPRHEYHQNLGDYDENA NRYYNDRDFRREQLLEEENEKNKKSKRWLIAIIAILLLIIGIFATKSYIDHKNESENKQH TYNATNDVSKNYQQEVQNQSDNIKKQVEDAKNDIKDKIDTESRLRQIQSQIDKLKNNEIT KEDSKLTQFYQDQVNKLKEANNAQQNNANENKVNALLDDVNNKVDDIKKKLNSILGNNN >gi|312979656|gb|ACRM01000009.1| GENE 70 80375 - 81520 1371 381 aa, chain - ## HITS:1 COG:SA2220 KEGG:ns NR:ns ## COG: SA2220 COG1929 # Protein_GI_number: 15928010 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Staphylococcus aureus N315 # 1 379 1 379 380 441 60.0 1e-123 MNIKKIVIAPDSFKESMTAKQAGLAIERGFKNIFGDSLKTEVIPMADGGEGTTEALIEAL DASIHSIKVHDPLFREVTASYARSRDNRVAIIEMAAASGLDLIRTDERNPLITTTFGVGE LIKDALNHHVTKIILGIGGSATNDGGSGMLTALGVKFLNSDNEEIELGGGALAHLTHIDA SNLDYRLNDVTFEVACDVTNPLLGPNGATYIYGPQKGATEKMIPKLDSALANYHDMIEKA YHISVKDIPGAGAAGGLGAGILSFFNASLSNGIDIVLKETQFLERIKDADLVITGEGKID VQTIYGKTPIGVAKASKQFDLPVIAICGSLGKNYQAVYQHGIDSVFSIIETPSELPYLLA HGERFLTQTVENIARLIKLNN >gi|312979656|gb|ACRM01000009.1| GENE 71 81671 - 83167 1036 498 aa, chain + ## HITS:1 COG:no KEGG:SH0632 NR:ns ## KEGG: SH0632 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 489 1 489 490 359 42.0 1e-97 MSNFKQHEFYIWVIGLLLFYGYLGLIIPLHGIDWFFGSPQGISAFYQHFDNLNGRYISNL IELVAVRSVILRMIMYSIISVSIILLILKLIRQTFSIRHLMLATILLLIIPNSVFSESYG SFGYFFSYAFGMICVLYHFCFISKILFTKDELKMYNIILFWISCFSGQLFAESLTFFVNL ALFTTLMAYFMLKRKINFNLLIGFLLSLCGTLIMLINQTYINYLSDIQAMRAHIDGLGYV HKLRVTILNDLPHYMFFNHIVIVSMIAIVIIGLLIKNTRFQTFSKIRQILLMIGILALPI YKIFIFEPFNFNQTTLITSYGLINFLLCFSFFVSISMASFIIVTDSYYRIILIAAFISII LSAIPIFFISEVTSQQFFIVYIMWCVILITLVTELHTLKQSYDNILKICVGCLLFVFIAI FTIVHFKYEARLNNIQTQIQQHRNEIIVKHLPFETYFYEMTPTEETAKENFKEYYQISNN KQLKILPFDINVIEDRGD >gi|312979656|gb|ACRM01000009.1| GENE 72 83170 - 83550 300 126 aa, chain + ## HITS:1 COG:SA2219 KEGG:ns NR:ns ## COG: SA2219 COG2246 # Protein_GI_number: 15928009 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 126 1 126 128 145 72.0 1e-35 MKLKQTHYEIIKFVIVGGINTLDYYLVYLILLKLLHVHYMVSHIIGFIVSFIISYYLNCY FVYRVKPTLKKFLSFPLTQVVNMGMQSLFLYIFVRWFHFPSEIAPFVGLIVTIPITFILS KWILKD >gi|312979656|gb|ACRM01000009.1| GENE 73 83731 - 84606 1027 291 aa, chain + ## HITS:1 COG:SA2205 KEGG:ns NR:ns ## COG: SA2205 COG0053 # Protein_GI_number: 15927995 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted Co/Zn/Cd cation transporters # Organism: Staphylococcus aureus N315 # 1 288 1 288 288 409 73.0 1e-114 MTQSENLKLAQRGAYLSLVVYIVLSVAKYITGYVYDSAAVRADALNNMTDIVVSIAVIVG LKISIKPADKNHPYGHLKSENISTLLVSFIIMFVGIQVVIENAPRMLTNEQHIPNFITII ISMMSGVIMIGVYAINHRLAKQTKSSSLDSASKDNLSDGLVSIGTAIGLLFTQFGLPIID VILATVLGCLIIYTGFGIFKDSIFALSDGFKEQDLEEYRSLVQEVTDVREVKNVKGRYHG SSIFLDVTIVVDASLSLQEAHDICDRVETHLENNGISSVYVHPEPNTLNEK >gi|312979656|gb|ACRM01000009.1| GENE 74 84647 - 85087 659 146 aa, chain - ## HITS:1 COG:no KEGG:SH0635 NR:ns ## KEGG: SH0635 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 146 1 192 192 142 53.0 3e-33 MKKSIFALMTMLSLGAAGVESGQAHAEEVSTSPSQQHQYQYHQSHTSNLNTSSSNTTTFS TSSTQSVYQRFLAARGTEEMWEKIVLPESGGNPNASNGQYHGLGQTNQSWGYGSVETQTK GMIQYAKERYGSIGAAIRFRESNGWW >gi|312979656|gb|ACRM01000009.1| GENE 75 85435 - 86121 1010 228 aa, chain + ## HITS:1 COG:SA2204 KEGG:ns NR:ns ## COG: SA2204 COG0588 # Protein_GI_number: 15927994 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglycerate mutase 1 # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 372 82.0 1e-103 MPKLILCRHGQSEWNAKNLFTGWEDVQLSEQGRNEAITSGKKLKENKIEIDVAYTSLLTR ALETTQYLLAESDQEWIPVHKSWRLNERHYGKLQGLNKDDARKEFGEEQVHQWRRSYDVL PPAQTEEQRQSYLNDRRYRHLDHRMMPYSESLKTTLERVIPIWTDHISQHLLDGDTVLVA AHGNSIRALIKYLEDVSDEDIIGYEIKTGAPLIYELDDDLKVTNHYYL >gi|312979656|gb|ACRM01000009.1| GENE 76 86255 - 86353 181 32 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKPDLQTARRNLKSSNIKTRKRALKMIKQYRR >gi|312979656|gb|ACRM01000009.1| GENE 77 86448 - 87887 1692 479 aa, chain + ## HITS:1 COG:SA2203 KEGG:ns NR:ns ## COG: SA2203 COG0477 # Protein_GI_number: 15927993 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 479 1 479 479 619 72.0 1e-177 MSHSKKLIMIFTMLLGGFFGLLNETLLTTALPRIMKDFHIEYSQVQWLTTAFLLTNGVVI PLSAFIIQRYTTRQVFLTGIIIFFLGTLLGGFSPNFITLLIARIIQALGSGIMMPLMMTT ILDIFEPHERGKYMGMFGLVIGLAPAIGPTLSGYLVEYINWRALFYVVAPISAVTFILAL IFIKNVGVKVKAPIDMLSIILSIIGFGGMLYGVSSISQKGWNDPVVLSTIILGIIFVVLF IWRQERLETPLLSFKVFKNNQFTVGIAIMAVTMISMIGSETVLPMFVQNVLQRTPVDSGL ILLPGAIVMAIMSIISGRLYETFGARVLSMIGMLIVTITTSYFVVMDEHTSTIVLATIYA IRMIGIALGLMPVMTHTMNQLTPELNAHGSSMTNTIQQVAGSIGTAGLVTILSVASQHFK PTLSDYQGMAKTEMMKHIQTDAMIHGYHSGFLFAVIITVVSLLLTFLLKRKKNLNEERH >gi|312979656|gb|ACRM01000009.1| GENE 78 88006 - 88806 1030 266 aa, chain + ## HITS:1 COG:SA2202 KEGG:ns NR:ns ## COG: SA2202 COG0834 # Protein_GI_number: 15927992 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Staphylococcus aureus N315 # 1 266 1 259 259 356 77.0 3e-98 MKRLLFVALTLIFVLAACGNSGSSDKNSDSKSSSSNSDKKTLRVGTEGTYAPFTFHNKKD QLTGYDIDVIKAVAKEEGYKLKFNETSWDSMFAGLDAKRFDVIANQVGINKERKEKYKFS NPYTYSSGVLVVRDDEKNIKSFDDVKGKKLAQTFTSNYGKLAKDKGANITKVDGFNQSID LLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGDAEQNKSAFAFSKSVDDKVVSDFNDG LKKLKENGELAKIGEKWFGENVSEPK >gi|312979656|gb|ACRM01000009.1| GENE 79 88787 - 89506 842 239 aa, chain + ## HITS:1 COG:SA2201 KEGG:ns NR:ns ## COG: SA2201 COG0765 # Protein_GI_number: 15927991 # Func_class: E Amino acid transport and metabolism # Function: ABC-type amino acid transport system, permease component # Organism: Staphylococcus aureus N315 # 76 239 1 164 164 260 89.0 2e-69 MFLSLNSQQQHALDAATQAFGPMLEGLVKYSIPITIVTFILGLIIALFTALMRISSSKVS RGIARVYVSIIRGTPMIVQLFIIFYGIPELGRLITGNADEQWTLSSVVSAIIGLSLNVGA YASEIIRGGIISIPKGQTEAAYSIGMNYRQTIQRIILPQAIRVSVPALGNTFLGLIKDTS LLGFILVAEMFRKAQEVASTTYEYFTIYILVAVMYWVVCFIISVIQGFYESYIERGYKA >gi|312979656|gb|ACRM01000009.1| GENE 80 89503 - 90234 637 243 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 240 1 242 245 249 50 5e-65 MIELSNIHKSFNDKEVIKGIDLNVKKGEVVTLIGRSGSGKTTLLRMINALEIPTEGNVTV NDKTYTAKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLVTVKKMSKSEAKNRALD LLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVI KELANEGMTMVIVTHAMRFAKEVSNKVVFIHDGEIGEEGSPEELFDHPKTDELKRFLNVI NEN >gi|312979656|gb|ACRM01000009.1| GENE 81 90336 - 90758 506 140 aa, chain - ## HITS:1 COG:SA0037 KEGG:ns NR:ns ## COG: SA0037 COG2030 # Protein_GI_number: 15925744 # Func_class: I Lipid transport and metabolism # Function: Acyl dehydratase # Organism: Staphylococcus aureus N315 # 1 139 1 140 142 152 56.0 2e-37 MKYSMFSIGDTFISKHYKITEKEILEFAHQFDPQYMHLDKKKAGQGMYKGIIASGMHTLS LSFKLWIEENKYEEDIIAGTHLNNVTFIKPVYPNDNLYVKVKVLDKKLKKQFGSLTVEIM TFNQYENKVLQFELTVLLSV >gi|312979656|gb|ACRM01000009.1| GENE 82 90799 - 92046 1294 415 aa, chain - ## HITS:1 COG:SA2199 KEGG:ns NR:ns ## COG: SA2199 COG2348 # Protein_GI_number: 15927989 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 415 1 415 416 594 73.0 1e-169 MKFVSLTPEEFEKFTSEHFSHYTQSRIHFDNRNEMKHDVHVVGVKDDSGDVIAATLMTEA RALKFYKYFYTHRGPVMDYSNIKLVHFFFKSLTEYLKKQNCLFVLVDPYILENLRNADGE ILKSYDNRAVIKTLEDLGYKHQGWSVGYSTMSQIRWLSVLDLKDKTEDQLLKEMDYQTRR NIKKTYEMGVKVKTLPMEDTHTFFELFQMAEEKHGFKFRDEPYFYEMQKTYKDHAMLKLA YIDLKDYLSTLQHKHEDLTKQLTEIEEALKESPNSKKNKNKRNQLQQQFDSNERKINQTK DKIAAEGEVLNLAAALYIYNEHEVYYLSSGSNPKYNEYMGAYRLQWEMIKFAKEHNIDRY NFYGITGDFSENAEDYGVQQFKKGFNAGVYEYIGDFIKPIKPVLYHTQQWIKNRR >gi|312979656|gb|ACRM01000009.1| GENE 83 92314 - 92673 456 119 aa, chain + ## HITS:1 COG:no KEGG:SH0643 NR:ns ## KEGG: SH0643 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 119 1 119 119 153 69.0 2e-36 MKRLILSLTVCVILLAGCGNDEYANKIDKAVKLQDKKQERLAKNEQGDVVKHFDKKDANI YVYEKGKYVVLAYRPLSNNDEMHYYTYQFKDKKATYLEHFDTKQYISTHDSDYKEENLN >gi|312979656|gb|ACRM01000009.1| GENE 84 92707 - 93294 638 195 aa, chain + ## HITS:1 COG:SA2197 KEGG:ns NR:ns ## COG: SA2197 COG1651 # Protein_GI_number: 15927987 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Protein-disulfide isomerase # Organism: Staphylococcus aureus N315 # 9 195 10 194 199 191 53.0 5e-49 MIFIGAAIICLIIIVVACSQKKKETTPAHTRNGKILIVEYGDYKCPYCKKIEDNVMPIIK KDYIDTNKVEYQFINASFLGKDSLMGSRAGNAIQAIAPKEYLTFQKNIYAHQQDEKKHWI TETLLDKEIDQLDISQKQKDRIKKEYKTKNSDAWKEAEKQKKLTKENHIQSVPTVFINGK KVKDPYKIKEWKKYL >gi|312979656|gb|ACRM01000009.1| GENE 85 93594 - 94109 778 171 aa, chain + ## HITS:1 COG:SA2479 KEGG:ns NR:ns ## COG: SA2479 COG2353 # Protein_GI_number: 15928273 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 171 1 171 171 154 47.0 7e-38 MANFNLDPVHSGVNFSIQHLVISNVKGRFNDFDADITGDFHDLSSLKGTFTVQANSIDTK VEDRDNHLKSEDFLNVEQYPEIKFEIISVDDHSVTGNVTIKDQTQKETFDLDYKGISLNP LNNKNTAGLVITGELDREKYGVTFNQPLETGGFLLGKILNVEFDLEFPIEE >gi|312979656|gb|ACRM01000009.1| GENE 86 94221 - 94691 689 156 aa, chain + ## HITS:1 COG:SA2193 KEGG:ns NR:ns ## COG: SA2193 COG3832 # Protein_GI_number: 15927983 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 154 1 154 155 178 62.0 3e-45 MSIEVKENKIIFKRTFKAPINDVFDAYTNPSLFERWFHPQGAKTKVYRFNTEEGGESFFA IETSEQTSYTLTEYRKVDRPKYLEYFDYFATPEGEKDTRLPGMHISINFNSDNKQMTTVT STSMFPTKEAAQQAVDMGIEAGMNSTLDQLEALLNE >gi|312979656|gb|ACRM01000009.1| GENE 87 94763 - 94945 293 60 aa, chain + ## HITS:1 COG:no KEGG:SH0648 NR:ns ## KEGG: SH0648 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 57 1 57 60 80 77.0 2e-14 MKERYLKVLGLFSISTLIPTLLINSKCLNNGVIKYILRTALGYGIFASGLRYFSKLKKAH >gi|312979656|gb|ACRM01000009.1| GENE 88 95070 - 95888 954 272 aa, chain + ## HITS:1 COG:SA2191 KEGG:ns NR:ns ## COG: SA2191 COG2116 # Protein_GI_number: 15927981 # Func_class: P Inorganic ion transport and metabolism # Function: Formate/nitrite family of transporters # Organism: Staphylococcus aureus N315 # 1 271 1 272 274 340 69.0 2e-93 MTSNHTTIEDTYTTKDLIKAAVRQVQMKEVMATQTPGRYLLKSMMSGFLLAIVTVFMLAI KTQFAGTNDGLVNLLGAISFSLALVLIVLTNSELLTSNFMYLTIGWYYKVITVKKVLYIF LFCFIGNMIGGFILFLLMKGTHVMTPEMVVSLSKTVHLKTVESTWLNILIKGIFCNFFIN IGIYVSMLFKEGLARAFFIAVGVIVFVFMGYEHVVFNAGLYAGMIFYNSDALSWIDVLKN IVFAFVGNYIGGGIFVGLVYAYLNGKRDSIKA >gi|312979656|gb|ACRM01000009.1| GENE 89 96013 - 96726 915 237 aa, chain + ## HITS:1 COG:SA2189 KEGG:ns NR:ns ## COG: SA2189 COG2138 # Protein_GI_number: 15927979 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 237 1 239 243 248 52.0 5e-66 MVANILVAHGMRKGDQNKALGEFIDSLLQDETYAYELAFIESEEKSVENTIINLIEKGET QFKVVPLLIFSAMHYIVDIPEMLRNIKQAHPNITYEISAPLGTHPYMVDLVEQRINDVDI KEESDVAVVLIAHGSFSYTKAHDELKEFSTKLKQDKPIYCRTLYGDITFKNDLNQLSRQY RHLIVVPMFLYDGRLVNKVKGLISEMDIANELHMTPSINFDPILKSIIRERLKELTV >gi|312979656|gb|ACRM01000009.1| GENE 90 96937 - 99342 2861 801 aa, chain + ## HITS:1 COG:SA2188 KEGG:ns NR:ns ## COG: SA2188 COG1251 # Protein_GI_number: 15927978 # Func_class: C Energy production and conversion # Function: NAD(P)H-nitrite reductase # Organism: Staphylococcus aureus N315 # 1 801 1 801 801 1378 83.0 0 MAKQKLVMIGNGMAGLRTIEEILERSDSQFDITIIGKEPYPNYNRIMLSNILQKKMTVEE TIMNTYDWYKEHHIELIVDDPVEKVDRQSKTVTTSKGITVAYDICIFATGSKAFVLPIPG SELPSVIGWRTIEDTERMIEIAKTKRRAIVIGGGLLGLECARGLMDQGMDVTVLHLAEWL MEMQLDRKAGDMLKADLERQGMHIELQANSKEIIGTDDVEAIKLADGRVIETDLVVMAVG IRPFTEVAREAGLEVNRGIVVNDYLQTSDEHIYAVGECAEHNDKVYGLVAPLYEQGKVLA DYLTGKETEGYKGSTTFTSLKVSGCDLYSAGQIVEDDTVHGIEIFNSVDNIYKKVYLSDG RVVGAVLYGDTDDGSRFYNMMKKHESLEDYTLVSLLHKGGEESGTSIADMPDDETICGCN GVDKGTIVNAITTNGLTTVDEVTKTTKAGNSCGKCKGQIGEILKCTLGDEFVAAKPTGIC ACTDLTRDEIVTQIRAKGLKTSKEVRHVLDFKDKNGCPKCRPAINYYLNMVYPHEHQDEK ASRFANERYHANIQNDGTFSVIPQMRGGVTDADQLIRLGEVAKKYNVPLVKVTGSQRVGL YGLKKDELPKVWKDLGMRSASAYGKKTRSVKSCVGKEFCRFGTQYTTRLGIRLEKTFEYI DTPHKFKMGVSGCPRSCVESGVKDFGVISVENGYQIYIGGNGGTEVTVGQLLTTVETEDQ VVQLCGALMQYYRETGIYAERTAPWLKRLGFDHVKEVLLDEQRQKELFDRIMDAKQALEE EPWEAIVENKEAQKIFDVEKV >gi|312979656|gb|ACRM01000009.1| GENE 91 99354 - 99659 363 101 aa, chain + ## HITS:1 COG:SA2187 KEGG:ns NR:ns ## COG: SA2187 COG2146 # Protein_GI_number: 15927977 # Func_class: P Inorganic ion transport and metabolism; R General function prediction only # Function: Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases # Organism: Staphylococcus aureus N315 # 2 101 5 104 104 160 78.0 7e-40 MEKVKVTTMDELTPLIGKKVIVKDKQIGIFLTENGQVHAINNVCPHKEGPLSEGTVSGEY VYCPLHDQKIDLNTGKVQEPDTGCVETYQVEIQDGDVFICL >gi|312979656|gb|ACRM01000009.1| GENE 92 99650 - 100600 984 316 aa, chain + ## HITS:1 COG:SA2186 KEGG:ns NR:ns ## COG: SA2186 COG0007 # Protein_GI_number: 15927976 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III methylase # Organism: Staphylococcus aureus N315 # 9 314 6 312 325 354 59.0 1e-97 MSLVTNSGFGKVYLIGAGPGNPNLLTKQAERLIRQADVILYDRLVNPLILQYAKPTTEII DVGKKPYTKHIQQEDINLKIVAAAKKYKVVVRLKGGDPAVFGRVTEEIDILKEHQIAYDI VPGVTSASAAVASLDLGLTMRSVAPSVTFSTGHFKDDIDQDMDIRNLANGGTLAIYMGIK RLNYIISQIRRYTKEDYDIAIIFNATCYNETIVVGKLSTIEYQLSKLNIKHDPGICILGH IINYMDDEKIIHSKQTIDETLYVIKGNKELALSKAEDLSQQYLKCLIQYDETYHSSQKYL YESIITQHQNIKYIEV >gi|312979656|gb|ACRM01000009.1| GENE 93 100807 - 104490 4217 1227 aa, chain + ## HITS:1 COG:SA2185 KEGG:ns NR:ns ## COG: SA2185 COG5013 # Protein_GI_number: 15927975 # Func_class: C Energy production and conversion # Function: Nitrate reductase alpha subunit # Organism: Staphylococcus aureus N315 # 1 1227 1 1229 1229 2258 86.0 0 MGKFGLNFFKPTETFNGNWSVLESKSREWEKMYRERWSHDKVVRTTHGVNCTGSCSWKVF VKNGVITWENQQIDYPSCGPDMPEFEPRGCPRGASFSWYEYSPLRVKYPYIRGKLLDLWT EALEDNNGNRIAAWASIVEDEKKAKLYKEARGKGGHVRASWKDVTDIIAAQILYTIKKDG PDRIAGFTPIPAMSMISYASGARFINLLGGEMLSFYDWYADLPPASPQIWGEQTDVPESS DWYNASYIIMWGSNVPLTRTPDAHFMTEVRYKGAKVVSVAPDYAENVKFADNWLAPHPGT DAAVAQAMTHVILQEFYEDEPSDMFVNYAKQYTDMPFVLMLDEDENGYKAGRFLRASDLG IKSENGEWKPVIHDAISHRLVVPNGTMGQRWEEGKQWNLKLETEDGSKIDPALSVAEEDY ELQTIQFPYFDSQGDGIFERPIPTKKVKLADGKEVRIATVYDLMASQYGIKRFGHELEAK SYEDSESKYTPAWQENVTGIKQELVTQVAREFAQNAIDTKGRSMIIMGAGINHWFNSDTI YRAVLNLVLLCGCQGINGGGWAHYVGQEKCRPIEGWNTVAFAKDWQGPPRLQNGTSWFYF ATDQWKYEESNVDKLKSPLANNIKHQHPADYNVTAARLGWLPSYPQFNKNSLLFGEEARD AGDDSNEAILKRAIESVKNKETEFAIEDPDLRKNHPKTLFVWRSNLISSSAKGQEYFMKH LLGTRSGLMAEPNENDKPEEIKWREDTVGKLDLLVSLDFRMTATPLYSDIVLPAATWYEK HDLSSTDIHPFIHPFNPAIDPLWESRSDWDIYKTLSKAISEMAKDYLPGTFKDVVTTPLA HDSKQELGSEYGIVKDWSKGEVEGMPGKTMPNFSIVERDYTKIYDKYVTLGPLLEKGKVG AHGVSFSVKEEYEELKSMIGTWNDDDEHSVRNDRPRIDTARKVADAILNISSATNGKLSQ KSYEDLENQTGMELKDISKERASEKISFLNITAQPREVIPTAVFPGSNKNNRRYSPFTTN IERLVPFRTLTGRQSYYIDHEVFQQFGESLPVYKPTLPPMVFGARDKKVKGGQDALVLRY LTPHGKWNIHSTYQDNERMLTLFRGGPVVWLSNEDAEQHGINDNDWLEVYNRNGVVTARA VTSHRMPKGTMFMYHAQDKHIETPGSEITDTRGGSHNAPTRIHLKPTQLVGGYAQISYHF NYYGPIGNQRDVYVAVRKMKEVNWLED >gi|312979656|gb|ACRM01000009.1| GENE 94 104480 - 106039 1668 519 aa, chain + ## HITS:1 COG:SA2184 KEGG:ns NR:ns ## COG: SA2184 COG1140 # Protein_GI_number: 15927974 # Func_class: C Energy production and conversion # Function: Nitrate reductase beta subunit # Organism: Staphylococcus aureus N315 # 1 519 1 519 519 1013 90.0 0 MKIKAQVAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGVGYPKRWEDQE HYKGGWVLNKKGKLELKSGSKWSKIALGKIFYNPDMPLIKDYYEPWTYNYEHLTTAKEGK HSPVAKAHSLISGDRLNLEWGPNWEDDLAGGHVTGPEDPNIQRIEEDIKFQFDETFMMYL PRLCEHCLNPSCVASCPSGAMYKRDEDGIVLVDQDACRGWRYCMTGCPYKKVYFNWKTNK AEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVHEAASAENEQDLYEKQLDIF LNPFDEEVIEQAEKDGISYEWIQAAQNSPVYKLAIEYKLAFPLHPEFRTMPMVWYCPPLS PIMSYFEGKNSGQNPDMIFPAIEEMRLPIEYLANLFTAGKVEPVKEALQKMAMMRSYMRA QVTNKPFDTSRLERLGLSEIQTKEMYRLLGLAKYEDRFVVPSSHKETYLDTYHAQGSQGY GGEYFGDNCEGCGVPVGSTSGKSSQEIYNENFYGGIFRD >gi|312979656|gb|ACRM01000009.1| GENE 95 106032 - 106607 733 191 aa, chain + ## HITS:1 COG:SA2183 KEGG:ns NR:ns ## COG: SA2183 COG2180 # Protein_GI_number: 15927973 # Func_class: C Energy production and conversion # Function: Nitrate reductase delta subunit # Organism: Staphylococcus aureus N315 # 1 191 1 191 191 291 78.0 6e-79 MINLTQFKYYQESFGYLAQQLNFPEKLTFHPNTFEETIHPSHPGYADLMKYREIMYQFTL SEIKAIYTDTFDFNKTSPLYMTYNKFDTQKERGQMLAKLKVLYEMFGLKMVDNELSDYLP LMLQFLHVASWHNDPRAEGNIELVIMIIEDGTYEMANQLAKENNPYAYVIRALRETLKAC LDIPKEVTHHA >gi|312979656|gb|ACRM01000009.1| GENE 96 106600 - 107289 850 229 aa, chain + ## HITS:1 COG:SA2182 KEGG:ns NR:ns ## COG: SA2182 COG2181 # Protein_GI_number: 15927972 # Func_class: C Energy production and conversion # Function: Nitrate reductase gamma subunit # Organism: Staphylococcus aureus N315 # 1 224 1 224 225 332 73.0 3e-91 MLNQFLWIIYPYLCVAIFIVGHIARYKYDQFSWTAKSSEFLEKKQLKWGSLLFHLGIIPV FFGHVVGLAIPAEWIDGLGISESTYHFGAVYIGSIFGIMTLIGMLLLTARRLTISNVRKL SSASDIFVNFLLILIIFMGCFSTLVTNAVITDFDYRQTISIWFRHLFTFSPNAALMTGVP LSFKIHILLGFTILACWPFTRLVHVWSIPLAYTNRRYIVYRKHKAPRAH >gi|312979656|gb|ACRM01000009.1| GENE 97 107310 - 107762 500 150 aa, chain + ## HITS:1 COG:no KEGG:SH0658 NR:ns ## KEGG: SH0658 # Name: nreA # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: Two-component system [PATH:sha02020] # 1 150 1 149 149 197 63.0 1e-49 MIPEPLFEPVHFQQELDTLRKKENCDFAGVALYENHEPSGPIKWQYVSGNLNNRYKLIVL RKGRGLAGTVMKTGKRMVIENVSKTITPEEKIKYPILMSENLNALVAIPLWHEQHVAGVL LLGQRGSKTLPKVISQLNIKGRLWEFNEEI >gi|312979656|gb|ACRM01000009.1| GENE 98 107796 - 108806 1022 336 aa, chain + ## HITS:1 COG:SA2180 KEGG:ns NR:ns ## COG: SA2180 COG4585 # Protein_GI_number: 15927970 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 336 9 344 344 447 66.0 1e-125 MEDLLKKYYETTNEKIVFVNKEGKIIAMNDAAEEIISKDNNYSAMTNAICDRCEGYSNEF ELQSCKNCYLDTSKPNDINFQVFMKTVDHKVRPFTASYQAIDEDNEIYAFTLQDISPQIE RQEKMYQRQMMRKTISAQENERKRISRELHDSVVQEMLNIDVELRLLKYQKESSELVQQS QRIEGLMSKLIDDIRHLSVELRPSSLDDLGLEAAFKSYFKQFENNYGMQIVYQSNIKDKR YDSEVETVVYRVVQEAVFNALKYAGVSSVDVFVQEVGRLLMAEVIDHGQGFDPNSQPQGT GLGLYGMNERAELVNGKVNVETHLGKGTIITLEVPL >gi|312979656|gb|ACRM01000009.1| GENE 99 108832 - 109485 655 217 aa, chain + ## HITS:1 COG:SA2179 KEGG:ns NR:ns ## COG: SA2179 COG2197 # Protein_GI_number: 15927969 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 217 1 217 217 370 91.0 1e-102 MKIVIADDHAVVRTGFSMILNFQEDMEVVATAADGVEAYQKVMEYKPDVLIMDLSMPPGE SGLIATSKISESFPETKILILTMYDDEEYLFHVLRNGAKGYILKNSPDEQLILAVRTVYK GETYIDMKLTTSLVNEFVNVSNQDEKATNDPFKILSKRELEILPLIAKGYGNKEIAEKLF VSVKTVEAHKTHIMTKLNLKSKPELVEYALKKKLLDF >gi|312979656|gb|ACRM01000009.1| GENE 100 109735 - 110892 1314 385 aa, chain + ## HITS:1 COG:SA2176 KEGG:ns NR:ns ## COG: SA2176 COG2223 # Protein_GI_number: 15927966 # Func_class: P Inorganic ion transport and metabolism # Function: Nitrate/nitrite transporter # Organism: Staphylococcus aureus N315 # 1 384 1 384 389 575 85.0 1e-164 MNKTKGGFQLTLQTLSLVVGFMAWSIISPLMPYISQDIKINPGQLSIILAIPVILGSILR VPFGYLTNIIGAKWVFFCSFIILLFPIFFLGQAQSPGMLMASGFFLGVGGAIFSVGVTSV PKYFSKDKVGLANGIYGMGNIGTAISSFLAPPIAGIVGWQTTVRSYLIIIAIFAILMFFL GDAKEPKVKVPLGAQVKDLSSNYKLYYLSLWYFITFGAFVAFGLFLPNYLVNNFGIDKVD AGIRSGVFIALATFLRPVGGILGDKFNAVKVLMIDFVVMIIGAVILGVSSHIALFTIGCL TISICAGLGNGLIFKLVPSYFAKESGTANGIVSMMGGLGGFFPPLVITYVTSLTGSSHLA FILLAVFGILAFITMGHLYKKEYAK >gi|312979656|gb|ACRM01000009.1| GENE 101 111130 - 111546 614 138 aa, chain - ## HITS:1 COG:SA2175 KEGG:ns NR:ns ## COG: SA2175 COG0071 # Protein_GI_number: 15927965 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone (small heat shock protein) # Organism: Staphylococcus aureus N315 # 1 136 1 135 140 104 44.0 5e-23 MNNREFFDQTIFKNNPRDVFRDLGEQVFNQFSTKSFPTNVYSQKNQYVLEAELPGVKKQD IHLKYEHATLTIKVIKQVSEQTGSVQLSERSSGELVRRFEFEDINKNQIKASYEDGVLVV ILPKNVTEEDEGTTITVE >gi|312979656|gb|ACRM01000009.1| GENE 102 111780 - 112223 519 147 aa, chain - ## HITS:1 COG:SA2174 KEGG:ns NR:ns ## COG: SA2174 COG1846 # Protein_GI_number: 15927964 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 142 1 142 148 182 71.0 1e-46 MYVKDSYLSKQLCFLLYVTSKEVIKKYTHYLKEYDLTYTSFMVLMAIENDEKINIKSLGQ RVFLDSGTLTPLLKKLEKKGYVQRMREKEDERNLQISLTQNGRDIKPVLEQISNQVFNDF DISDDEADGLASSLRHIISENFGSNAE >gi|312979656|gb|ACRM01000009.1| GENE 103 112505 - 112864 477 119 aa, chain + ## HITS:1 COG:no KEGG:SH0664 NR:ns ## KEGG: SH0664 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 119 1 119 119 178 80.0 6e-44 MSKKQKIIRIIIILAISLVLAIAFFFGTKAYQGHKNVQLVDNYIEQKHLKDKIKSEKTLY SAKRGVYYKQVVFKDEPNLTYIIQPIGTRKGILVEGFDTETKKSIKSAKHNYFNQNYKP >gi|312979656|gb|ACRM01000009.1| GENE 104 113212 - 114513 1600 433 aa, chain + ## HITS:1 COG:SA2172 KEGG:ns NR:ns ## COG: SA2172 COG1301 # Protein_GI_number: 15927962 # Func_class: C Energy production and conversion # Function: Na+/H+-dicarboxylate symporters # Organism: Staphylococcus aureus N315 # 9 433 1 425 425 605 83.0 1e-173 MSEEGGFNVTLFKRKVSLPMQVLIALVLGVVIGLLLFGQTGVANYIKPFGDVFLNLIKMI IIPIVFCSLALSISNLGDSKKIGSYGWKSILYFEIITTIAIGLGLIIGNIFKPGIGLDPD KLPKGDITKYQSTASAAEQSTYGNHFIDTIVNIIPTNIFEALTKGELLPIIFFAVFFGLG LAAIGEKAEPVKGFLNGTLEAVFWMINKILKLAPIGVFAFICTTVMTFGASALIPLAKLV LVVVFAMIFFIIVVLGIVARICGISIFSIIKILKDELLLAFSTSSSEAVLPVMMSKMEKF GSPKEVTSFVIPIGYSFNLDGSALYQSIAALFVAQMYGIHLSLSEQIILMVTLMVASKGM AGVPGVSIVVLLTTLGAMGLPAQGLALIIGVDRLLDMVRTCVNVIGNALSTVVISKWEHV YDKEKGKKYLESI >gi|312979656|gb|ACRM01000009.1| GENE 105 114640 - 114993 449 117 aa, chain - ## HITS:1 COG:no KEGG:SH0667 NR:ns ## KEGG: SH0667 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 117 1 117 117 171 82.0 1e-41 MKNKKGLGLGIALIAIMLIVSIILAIVMLNGHQKESYYGYMKDSHTIDKMVNEQTEKVEK NVKLPSNTNVKVKKGDFVFLVKEKGSDSFSRVSKVNHDDVPHGLMMKIHEMHDMKGM >gi|312979656|gb|ACRM01000009.1| GENE 106 115169 - 115591 514 140 aa, chain - ## HITS:1 COG:SA2170 KEGG:ns NR:ns ## COG: SA2170 COG3871 # Protein_GI_number: 15927960 # Func_class: R General function prediction only # Function: Uncharacterized stress protein (general stress protein 26) # Organism: Staphylococcus aureus N315 # 1 140 1 140 140 191 72.0 3e-49 MDKQKVTQAIEKVLNTSKIGVLSTAYNNKPNSRYMVFYNDGLNLYTKTSNKSSKVKEIQS NPEAYILLGYNETTNNSFVEIEASIDIVEDQKVIDWLWETQDKTFFDSKEDPNLCVLKIN PKTITLMNDDDIDTPITIDL >gi|312979656|gb|ACRM01000009.1| GENE 107 115635 - 117740 1209 701 aa, chain - ## HITS:1 COG:SA2169 KEGG:ns NR:ns ## COG: SA2169 COG2207 # Protein_GI_number: 15927959 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 699 1 699 701 632 51.0 0 MSSTLFLHENITSMPRRNINHVLILFSLTNELEMTINGKYHQLSNHIAIINQGDLYQINK GRNLIELKIPMAYFYLEDATFFNCHFDAHLLQSSHFIKSIILNNIEHMYNTSHHDDKVIP KIIRTFYKEAVIRHPHIYIPKIPVEQHILANLLTFIHDHITSNISLQDIAAHALISESYC SNLFVRILNINFKDYYTSLKINHAIRLLICTNDSITSISEQSGFSSHTNFTNQFKNYLNL SPKRFRSQLNHSDPISAIRLKSDIEPKHFELISQFETTEHLSTETTIIDLEQLEALQHTR SSKAFIHFKNINELFQFVFNDYYVIDLSYLPKPAILINDMSDMNQHSINGTLLNRCFEKL FEKNISLAVVIKNKSEFTTFYDLIMTFLENNQDYKWNKKSVRFMLVFDTKSMTIQDIHLS YLKLRNKNRSIKYGVLVEGLLHQYEKLQEVYDTMKRLNFDYYFVDIENIDTKNILIEYQR GFTHANTHFENYIHFIKNSNIPSTQFVYSSLSLRCFKYTNDGKHPLQLADLVCHLTALLK YGGGICYHLFEDDPMFIALFNRHGSLLPIMHLYQFIAAFIDVPIHISNNYLMSQKDGNYH FILFNKINDRYLSDSKQHYQILNKLNENSLIIANTLNKEHGTIHQLMSQDNLPVYIEKSI IRQLDRCNQPKTELFIQEETNHPFNMTLHHDEVKYIYIKSV >gi|312979656|gb|ACRM01000009.1| GENE 108 118534 - 118614 106 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFIAFIIAVIVTLVLSRRKAYKAAAE >gi|312979656|gb|ACRM01000009.1| GENE 109 118657 - 119598 881 313 aa, chain - ## HITS:1 COG:SA2166 KEGG:ns NR:ns ## COG: SA2166 COG0598 # Protein_GI_number: 15927956 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Staphylococcus aureus N315 # 1 313 1 314 314 405 80.0 1e-113 MLTAYKHSTTNEIVETNINQSASWINVVEPDREEIEQLIEQYNLPEDFIRDPLDADESAR IEYDEDTGYSLIIVDLPIVSSTNRHVLSFVTIPLGIVIGNGVIFTICDAENEFLENYSRQ DNVNLKFHSRFALDILLTISNHYNRNLRLLNKSRIRIERDLKNSITNKQLYRLMEVEKSL VYFLAALKGNDTIIKKLFRLPAIKRFEEDEDLLEDLVIENNQAIETTELYTGILESITSS YSSLLSNEMNNIMKTLTLFTVLLTLPTLVFSFFGMNVPLPIDDKSYVSWLVIVGISLILV TIVSIFLWRKQKL >gi|312979656|gb|ACRM01000009.1| GENE 110 119623 - 120246 554 207 aa, chain - ## HITS:1 COG:SA2165 KEGG:ns NR:ns ## COG: SA2165 COG1309 # Protein_GI_number: 15927955 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 205 1 205 207 228 59.0 4e-60 MKEDRRVRKTRSAIKSSFIELLNEKELEKITIQDIADRADINRGTFYLHYEDKYLLLSDM EDEFISQMTFLNHLHNIMGKDPEDTAKNFINIILKNMLQHISDNITFYQTILQLNRKSKL EEKIYSLIGENMQKYISTNHEIEGIPEKYFHSYVAGATISTVKFWVNDPHRLSVEDLTNH IFKIIYNGPLRIMVQHQYKTLNIDTAK >gi|312979656|gb|ACRM01000009.1| GENE 111 120529 - 120756 219 75 aa, chain + ## HITS:1 COG:SA2164 KEGG:ns NR:ns ## COG: SA2164 COG1511 # Protein_GI_number: 15927954 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 75 42 116 425 86 53.0 1e-17 MVNNDKGLDIQGNKVNISKTIEDKLIDSDSDSVKWIKVDKESDIKKGINDHEYYGAAIFN KHFSKNAMSKTQLII >gi|312979656|gb|ACRM01000009.1| GENE 112 120848 - 120976 105 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKRNIILVLFILNALFGLTGVVWSLLIAETLCSLLAMFIVYV >gi|312979656|gb|ACRM01000009.1| GENE 113 121174 - 122421 1310 415 aa, chain + ## HITS:1 COG:mll3323_1 KEGG:ns NR:ns ## COG: mll3323_1 COG2372 # Protein_GI_number: 13472887 # Func_class: R General function prediction only # Function: Uncharacterized protein, homolog of Cu resistance protein CopC # Organism: Mesorhizobium loti # 5 150 7 150 150 65 33.0 1e-10 MVILKRSSKVAIALLMMFLFLFVPSMTKIASAHATLEKTTPAQNGIVSKQPDTIELTFNE PVNAEYSGITIYNDKGKKVADVKPSTIGHSDTLSFSGKQLKEGTQQIKWHTVSADGHEIS DQFEFSVGKKTANGVDTTPVAYETPAFWFGVFRYIAEGATIILVGLYWLNGIARRNNLST FDIFPRHVAVSLIMMMAYIMSLVLYLMTLSSDILDSVLTFNPSVLIQFPYILSAVALIIL SGLFVLRNMERTWYWAISIIMILALSMSGHAWSQSAPVWSIILRTLHLAGISLWLGALIY LFSSVFTKKRDAVDLLREILFKVNGAAVAVIIITGILMSIDETKILSIWSNMQTWTILLI IKIVGTLMMMALGFMQTTRALNKRYRINKVSLIVEVSIGIILILVGVIMSQINIP >gi|312979656|gb|ACRM01000009.1| GENE 114 122438 - 123049 733 203 aa, chain + ## HITS:1 COG:BS_ycnI KEGG:ns NR:ns ## COG: BS_ycnI COG4549 # Protein_GI_number: 16077462 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Bacillus subtilis # 22 201 24 203 204 91 33.0 8e-19 MFKKLFASGLVFFFSLGLFKYADAHVTINPKAVEPGSYEKVDVRVPVEQKDHTEKVELDI PKEVQVSNIQPVEGYKYSLDKDKKGNITKITWKAKDKGIGPNEFIEFPLLVESPKEEGTY SFKAVQTYDNKDKVKWTGKANSEHPAPTLEVEKNANAVTVKEDNAKKDERSQSSSGGSIA LWIISLVAIILSLVALFKHARNK >gi|312979656|gb|ACRM01000009.1| GENE 115 123179 - 123595 632 138 aa, chain + ## HITS:1 COG:no KEGG:SH0680 NR:ns ## KEGG: SH0680 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 138 1 138 138 198 87.0 5e-50 MRRLLYAFLVYMIIGLVSGFYYRELTKAHDFTGDTQLALVHTHTLILGMFMFLLLLPLEK VFKLSSFYLFNWFFIVYNVGVIITVGMMLTKGTYQVTGKSFSPEAFAGFAGIGHTGMLAG LLLLFFLLRQAILKEPRD >gi|312979656|gb|ACRM01000009.1| GENE 116 123684 - 124085 630 133 aa, chain + ## HITS:1 COG:SA2161 KEGG:ns NR:ns ## COG: SA2161 COG0454 # Protein_GI_number: 15927951 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 133 1 133 133 164 58.0 4e-41 MIHYSNHPPNVKDYCELRAKAGMSPKSETAAKKGLPHACFNITIYEESTLIGMGRVIGDG GTAFQIIDIAVHPYYQGQGFGKEILKQVMSFIENHAEKGTYVSLIADYPADQLYKKFGFQ STEPKSGGMFKKY >gi|312979656|gb|ACRM01000009.1| GENE 117 124494 - 132692 9055 2732 aa, chain + ## HITS:1 COG:no KEGG:SERP1011 NR:ns ## KEGG: SERP1011 # Name: ebh # Def: cell wall associated fibronectin-binding protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 2725 55 2754 10203 1709 41.0 0 MNYREKLQKFSIRKYTVGAFSTVIATLIFLGSPQAHASEQLQKDGQVIQAKARDQEQTSN ETSNKQVQSNTEPKASPVSESQKGNNETLNKVQTTDTLTNDLTSFSSQNENKDTSHTTTD LKENNEAKSQLNKLDDINVTEVNEGHNHDNRNRTRYEDREASDDTLVSSTSTTIDGDKLQ AAYDRSYAEYQKIDREQSDNKKLAQIKSTFNKVNHFFSENNNSNQTLINELYKELEQANA LIESLPQRQVRTISTRANREARAVRSSRRPVRGQGGTRPPSNTANTYTPPVVHNSRPKPG SKVKKNSDLYNNAKKEWYVENENDGSGYWSGTFLHATNKSAPYYTTRSHYRNMSPSSVRG IAEISSIRQNDGYLWTINFNKYHIKRNGMVFWFGLPKGQTPTGPVRFTVTDVNGRETASS GAGDGRDQSLSRMWDSAGGITSSAYNFRQGNPLNRSEFYNDSVNHIYNLGDFARGNENQP LTFFEREGVPNKIKVAGDDIYRYLTAQVDHNQGIDHIYAFQARGTDSYTIQFKTSGSSQD RLYYAAGGRGIEFNEINNYNQLYLEPLEQYNDRKTKIVDVIDRVLHIDHVESAYDVPERR IMKKHYLDSDFATHEYAEDVASYLSNPSDHVMGLFPRVPTDRYRGNFGVNPLNSYEIHEM FSEEKLKEAARTGRPIEIFVGFNVSDAYHNGETIKKVNLFVKPKLEQSIGFYSDNATDNK ENSPESQAAHHAVFLQQEGQMLNTVTNGNSKDYHQNIRIQFKSNESANVWEISGYPPSLR IEDAVDRPNTELEKNKVLVGQLPPGRHVMTARIGNETKIFEVIAKPNPPVISTLAAQLGQ KGGKKPTITVTHVPQDERAKVRLVSGGTDGAGPGTSPLGYTVLAEKMANLDGTVTFEESD YTNPLPNNGVIRAITYYEDPVQSNFSNSINVGLDTTPPTFSNVRGLQDKYYRGDNVNISI PVSDNAYGSGVEDASITGNSGLQAVFNRDASGDAGTLVITGTISNDVTWNSDILVQPVAH DRAGNTTNVSPYHLHIGKLSDDKPVQLFSQQELKTVVNPNSISQSERNDIINSLKAKNSS LTSFLSTFNPYMVDNDGRVVLTFKDGSTRIIDPAQVITYRPQRKSIYTEPGSSNTKEAFI TIAKGQEYTIGPDLRKYFSLSNGQDIPNNAFTTINGSSIPSPQAISRLNAGIYTYNVDAL NAYNHSSERLTIKVNVVDVNTLAENQRVYRSTTKNLSNDEITQVRNAFKDANPQLNLNDS DIRIENDEPLSNHPSRVRVTITKGELTKQFISTFDHMDFLKWINLRNDYTVTWTSQKLNG RGTDGGFEWSPDGKTIIYRYDATTGRRITGNDVLSLLRATPKHAGLRNHIEGQEKILAES GSARGFKPVGYSKGNSIYSDGEHPFTYDGQPIQVLDIVDSNTGYSNSVIARSDYRHTSSN STVMSGDIPAMNGAAGFHLDKVLKQNGTGNGIMGAVDKQQLYLTPYGAKSYIERLGQSMS STDNVINIVFVPTDKVTPNIVLDNYNDHVVFSGETFRNTLTLTDNFGIKNVTVPNDSQIP MNVLNHSILSGVAPNVSTPMSKQVKVKVTDGSDNETTAVFNVLIKPLKDKYSVMTTADES HPIRIANISNNASLSETDRQAIFNSLDISKSITNRNYVTDGSNEIRSREISNVHRSGNNA NVEVTITYADNSRTSITVPVKHVIPNIRGIELFTVQGQPFPSGKGTNNNDFFVINNDHPL TDATVTWIGNGPDINSTTVGVPQILRANILFDGETTPIEKEAHYRVVKAKPKRVYQTTIN GNFLSSNEGLSSNVGSFVEGIANYLPSGTNFDWAPGSGQPLSNSPGIFTETINVIYPNGQ VDPVNVLFKVKPTTPSIDTISTKYKADLSGQSIKVNNVPNNAHVKLYTEDGREISNTTMT RNRDGSVSITIPGVLPLGNIKAKSIITVDHLTITEQNNSGSVVNSTRSESIESDLSTSSP VTKQLEAVDGGLKFVKGDNIDLNNPRTYINSNSDIIRVEWEQNANQWKNTIGTTTKRAIV TLSNGETRTVSIPVTIYAPATAKAPQRDVVGHALTYGDDAANYVTFENNYMNGATVTWKN NNAPNNNIAGVQSLTAEVRYNGINHVYNVPVKVYEYKYKFKKSEYSTIVGTSFDGNGNIN NYVALENANGLPTDGFHFVWNQNTTASHNEQWSNLVHPTQAFKKEARFEVLDNQNHVFFT SDTAIFKVTNAAPNPATVTQNDVGDVVISPGVGKNLGVNVENIIVNPDRITVKKGNQVIG TFVKNNTGKWTKASDSINTPGLSVSPDGSEIIYDKMSVPNDTLINTESTTGNGELTSEAA ISATYKVKPATPSNTTFAFKQNGEFEVIPNNANASTTKNPTDKVKISYVEKMGNSTEQSR ELIVTKNNQNQWSMNNQLDYVTLDSRTGKVTFKANSLKPHVLINTESIAGNDDNFSHNTV GVVGPDHHDVVIHEIVKEPGERVSNEELNNAISVDNKDHANVNEGVSLPTNLQSDTTQAV PTRITYRDGSIEIVNVPIRTHADKSSIRNALPKLNAQGDTNGKTPLSVTAYNNEMQHLHD EIEAVRRKANEVLSNDRATNTDVVNVTNNINDVSLKIQHAISLLQNKADNSALVEAKRQL DVATAEQDPTSGMTQVTSDNYRAKKAEAERISSEAQGVINNGDATAEEISDEKAKVEEAL TQLTEAKNALKADKSVLEQKRPGLNHVGVTEG >gi|312979656|gb|ACRM01000009.1| GENE 118 132899 - 133414 323 171 aa, chain - ## HITS:1 COG:no KEGG:SO_4262 NR:ns ## KEGG: SO_4262 # Name: not_defined # Def: hypothetical protein # Organism: S.oneidensis # Pathway: not_defined # 10 168 13 161 165 79 30.0 3e-14 MSNCIVCDSLIEMSEFNHDYHKYINYLYLEVFKKFLYNNKVYFNDKKISLKRFPEECGWE NSFFHLTTVSANKNVPLSEREPDFRRCERLHWIKPAIETDHINVCNFKCFEVFEDNSRRF KRIKMLNEEERYLIVLEDREDYYLLVTAFYIEHDYYLKGLIKEREKAKSAT >gi|312979656|gb|ACRM01000009.1| GENE 119 133417 - 134115 343 232 aa, chain - ## HITS:1 COG:no KEGG:Athe_2468 NR:ns ## KEGG: Athe_2468 # Name: not_defined # Def: hypothetical protein # Organism: A.thermophilum # Pathway: not_defined # 1 225 11 235 241 187 46.0 2e-46 MINIYCDESCHLENDNINIMVLGAIAVPEFAKKTVYQEIKKIKENMNISPFREIKWTKVS NSEIEYYKKLIDYIFENESLKFRAVLLPDKSKLNHKYYSRTHDDFYYIMYYYLLRKYMNT NETLKVYIDIKDTKSNEKVKKLQNILNNNAKKKKLKNIENIQHIRSHENAILQLSDLLIG AIAYENRNLKTSSAKIELIQYIKDKFQTSLRNTSPFSSEKFNLFVLDKLKEK >gi|312979656|gb|ACRM01000009.1| GENE 120 134119 - 135336 1093 405 aa, chain - ## HITS:1 COG:SPy0937 KEGG:ns NR:ns ## COG: SPy0937 COG0582 # Protein_GI_number: 15674956 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Streptococcus pyogenes M1 GAS # 1 397 1 373 379 179 32.0 9e-45 MWHEKFTNKHGETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQKRLNERIEEKQN NKIPTTLKTLTFHAACDEWFENYKLTSGAKQSTIRAKTYRLAHIKERINEDILVDKMNAQ VIQDYINTSMKENNIKHITIKVNVSLIKSVLKFAQKRYNISDISYIDNVSLPKKAVTREE IKAKRENYLEMNEVHKLIDELNHKSSTSNKGYIKRSYMMTAYITEFQVLNGLRIGELLAL QPENIDFKNKKIEIDGTIAWITKDGVRGFKDTTKTEASYRTISITTRSCEILRKVMLENK KSAKWDSNFKERNFIFTNSKGSPMPLSSINANIKNAAKNVGIEKDISTHTMRHSHISLLS QLGVSLRAIMDRVGHKDYKTTLQIYSHVTEQMDKDMMIKLENIGG >gi|312979656|gb|ACRM01000009.1| GENE 121 135357 - 135953 998 198 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474694|ref|ZP_04059425.1| ## NR: gi|228474694|ref|ZP_04059425.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 198 1 202 202 127 91.0 4e-28 MKRLLGTLFAATLVLSACSQDDTKEDENKKSESTTEKKADDKKDKKTKEDKKSKEEKKSQ ENEDNKSTQENNSTEEQDTQETATNEQVQSQEPITQEQQQTQQASNSQQTPQQQQNNQNY NQTQQPNQNVKLPKNTEIDDQYIHGEVAEALQRKTEIERQASEDYENGLISEDEAMERDE QASEILNQAVENQYGSQD >gi|312979656|gb|ACRM01000009.1| GENE 122 135999 - 136400 511 133 aa, chain - ## HITS:1 COG:no KEGG:SACOL0888 NR:ns ## KEGG: SACOL0888 # Name: not_defined # Def: pathogenicity island, lipoprotein, putative # Organism: S.aureus_COL # Pathway: not_defined # 1 132 1 142 143 136 57.0 3e-31 MKKVFILLLSSLLVLAACGKNYEISDITNKFKKEGLSVENLRKMEREDFGMAPMKTENAK IFTVSDGKNARILKFKNEDDLKEMKKYYEELGKSSAAFYSHVYTKDKFLIQMNGDIDDHV FEKYKKAMNEALD >gi|312979656|gb|ACRM01000009.1| GENE 123 136484 - 137191 608 235 aa, chain - ## HITS:1 COG:no KEGG:SLGD_02009 NR:ns ## KEGG: SLGD_02009 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 233 1 233 233 225 66.0 9e-58 MKFGEILKEYRNSLNLSVNKLSKLSNVSVGYISKIENGKRNFPSIRTIFLLLVGFKNSKL SDQTKSIKDIDKEIKDILSEFISAEDSEIDSKELEKIYNDFNTFYEDLNNEESEKIEKNR KVSLFVFEESKNKIQDIKLKEPINDLSFHLDDNLNEKFFNGVLLNEYDKIMIKEIVNSIL TSRIKQEDNYLSEDIEQLQKQFNDFRKEALLNKKQLKMFANHNSLQSLKENNKNN >gi|312979656|gb|ACRM01000009.1| GENE 124 137357 - 137542 254 61 aa, chain + ## HITS:1 COG:no KEGG:SAB1910c NR:ns ## KEGG: SAB1910c # Name: not_defined # Def: SaPI1 Orf21 # Organism: S.aureus_RF122 # Pathway: not_defined # 1 59 3 61 62 87 72.0 1e-16 MGRDRVSALKLSKETGISRTTIYGLYHERTKSPDMQTVMKLCDYFKVTPNEFFGIKEKEE V >gi|312979656|gb|ACRM01000009.1| GENE 125 137546 - 137818 460 90 aa, chain + ## HITS:1 COG:no KEGG:SAR0369 NR:ns ## KEGG: SAR0369 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 90 1 90 90 129 70.0 4e-29 MPHVKLQDLPTKENVVTEPKQVVVKPIMAKPNAIAKLFGISYSSVNRILKEYDKDNKGVE DLYYSLSSTMTVISIDGFKEYLSKRHKGWL >gi|312979656|gb|ACRM01000009.1| GENE 126 137835 - 137993 181 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAKFIVKLMLISVISFISGWLLGIHVAFTIYMLSSVIAALNIEENGGLVNEH >gi|312979656|gb|ACRM01000009.1| GENE 127 137983 - 138315 505 110 aa, chain + ## HITS:1 COG:no KEGG:SAB1907c NR:ns ## KEGG: SAB1907c # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_RF122 # Pathway: not_defined # 19 109 3 93 122 103 67.0 2e-21 MNINQKLNTTNKFREENEKMKKLTNQDFKNIEGKLNYEHMVNGKKHTNKMIKLLQKRHAK NVSVIKSEYPYLSDNEISEILADYREYEDLLSATETFIDFPNIYEDSNIG >gi|312979656|gb|ACRM01000009.1| GENE 128 138383 - 138694 487 103 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKDLKQIKESFEIADISNKIQAVIDYVCDEQEGLEDLRDYYKKSNQVVGEKQTNDNMKS NFIIISTLLSVIRDYESELNDIDTVIKRASSVPSDQTKTDNAE >gi|312979656|gb|ACRM01000009.1| GENE 129 138778 - 139485 471 235 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|284023385|ref|ZP_06377783.1| ## NR: gi|284023385|ref|ZP_06377783.1| bacteriophage resistance protein [Staphylococcus aureus subsp. aureus 132] # 1 232 1 232 537 291 64.0 3e-77 MDEVSLYKKHYQFHSKLDNVDTPNLSRIKEISKRIYFAAITTEKQIFNNKGNIYHQAKDE FAGDYISNLTLDYTIKPREIGAVYGTISVKTTVENGEEKKEAHFKPSKINSYAKFIIDLI TEKVIYSKELDSFIKLKSNQYEIIDNTNFSLEYPVDNKYHINDFLDVMLEVYKEYFINDY QYNIYPYAIAGNDWIYDCKELEFVNKKISNNDYYIIKYDVDKKNINTQLAQNSLT >gi|312979656|gb|ACRM01000009.1| GENE 130 139521 - 140390 864 289 aa, chain + ## HITS:1 COG:no KEGG:SAK_0619 NR:ns ## KEGG: SAK_0619 # Name: not_defined # Def: bacteriophage resistance protein # Organism: S.agalactiae_A909 # Pathway: not_defined # 19 281 255 513 517 113 31.0 8e-24 MVHAYTMYRKMKLIQAEKWFLIKDFGRSGKGLFMETFEKLLNVNKVNFDSLLSSGFEAAN EWLNFYGADIAHANETGEINKGMMRILRKIATGENISGRGIQRNNVKFKNNAVLILDTNE SVDTGEITANRTRTVKIAFKDRPKNETDEERYKVFKPYWDFVKPNGKNSVNASVSFLILS LEYLRQIGREFKFNNVTLKNYYNEDELTDTQILMLKVLSKQDFIFSGDEILQKTIEEDYK SLRYKKSKEDMKKIGVAINQQEWIEGQNTKVHKVKNQELFNMALALIET >gi|312979656|gb|ACRM01000009.1| GENE 131 140548 - 141369 687 273 aa, chain + ## HITS:1 COG:no KEGG:spyM18_1288 NR:ns ## KEGG: spyM18_1288 # Name: not_defined # Def: hypothetical protein # Organism: S.pyogenes_M18 # Pathway: not_defined # 4 271 7 286 293 152 34.0 1e-35 MKMYNAAKYLLSKDVQVVPLNDNKKPTVAFKNVTIDDDFIDNNFLAYANTNVLGVLTRGL WCIDIDINHVNGESGFDSLKDIPYYDEFVSNAQNTLVQTTASGGKHVIFKKRDGVEYAQK IGYLPSVDIKAHDNNYFVLAGSKTAKGLYTSNKKPVIAYDGEFEDRIFSKRGNYLQQTME KFSVKSVLPNHNFNHLQHTGKGGLGKEAYNRVINGESVERNNDVYKAISYALQCNVDIEP LKVIIGDVKANGDEFTLEEWEASYNSARNSLRI >gi|312979656|gb|ACRM01000009.1| GENE 132 141344 - 141625 143 93 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|66395181|ref|YP_239458.1| ## NR: gi|66395181|ref|YP_239458.1| ORF017 [Staphylococcus phage PT1028] # 1 90 1 90 90 98 55.0 1e-19 MQETHYEFNIDDELRKLGLLVGISEEVYYCSISRISTLYLENFGTKWVAWRETYDLQNNK RVSYRTIANGSFELVTARTKNYLNYIKRKQGIK >gi|312979656|gb|ACRM01000009.1| GENE 133 141622 - 142266 468 214 aa, chain + ## HITS:1 COG:no KEGG:SH2091 NR:ns ## KEGG: SH2091 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 214 1 214 214 374 92.0 1e-102 MNVEIIANEFETRAATLLRYFTGLCESSYKLPFAFKIYNDPFNVVYLVSKGKMYAHVLIK NCEVRKSFEIASEKHTEKLIESIEGYYTGYDLHDSTHDTISDMMASFMFDNDYFMYGLET FAESNNSDMFDYMSRDFNIAELEDVQSSNADVIGNMEMLYQLATGINEPAPELVEGLKII TEFIQNEQANEIDSKVLIERLNELKHSYYNGVKS >gi|312979656|gb|ACRM01000009.1| GENE 134 142266 - 142847 315 193 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474653|ref|ZP_04059384.1| ## NR: gi|228474653|ref|ZP_04059384.1| hypothetical protein STAHO0001_1183 [Staphylococcus hominis SK119] # 3 193 4 194 194 297 82.0 2e-79 MFVTKEIKELNITDGAMLEFLKLQEEDYTLCNNGYVLIDRNDNVVGNLLPLISSLDFSYS YVDCEYVDIATITCFDKSVIPTIPYKWDNSKAKYINICLELEQVEKHFEFAAWKLYCVLN GINKNNYDKYKWVLERIKKTPDDMPNVDIPIGRAYEIAQLPKNLIERTYNVNGKSKPIYK MNIKQIRNLKEYV >gi|312979656|gb|ACRM01000009.1| GENE 135 143263 - 143595 368 110 aa, chain + ## HITS:1 COG:no KEGG:SH2089 NR:ns ## KEGG: SH2089 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 110 1 110 110 167 85.0 1e-40 MTITIEKELTQDHIKVLNVLRNTKHNIITKQNIFNQLNMEFTKNNERWLQHTINSLVVDY GYPIGYSYKKDTRGYFWIKSKEQKELALLSIKSHIEGSMKRYEALKKTEI >gi|312979656|gb|ACRM01000009.1| GENE 136 143664 - 144254 590 196 aa, chain + ## HITS:1 COG:no KEGG:SH2088 NR:ns ## KEGG: SH2088 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 196 1 196 196 227 76.0 2e-58 MKTAKYFDEYNEYVIGQRKGINKLEKERQELTQQIKEDKAKYKELIANSQDDEADVLYTT FDSNEKKLKALEKRLSTKKEVFDEARRKKAIELIKHQKEVPQLYKKDKEKLLAKFYPIME EYNKVLKEIDELNVKYENEYLRYAAPYYKENFNKDNEVKRELRNHFRDILYSPFISGMDL PIIDQFNDRLKFRGDK >gi|312979656|gb|ACRM01000009.1| GENE 137 144254 - 144466 426 70 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474578|ref|ZP_04059309.1| ## NR: gi|228474578|ref|ZP_04059309.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 70 1 70 70 70 87.0 4e-11 MTRKHNLDKVSNHIMLETDLSDKDRDKLLDVVEAQINQNNDEQRRKEAKQQSKSSKSLIQ MARENRIIKG >gi|312979656|gb|ACRM01000009.1| GENE 138 144521 - 144958 277 145 aa, chain + ## HITS:1 COG:SA1822 KEGG:ns NR:ns ## COG: SA1822 COG5577 # Protein_GI_number: 15927590 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Staphylococcus aureus N315 # 14 135 16 137 175 109 53.0 2e-24 MNLKRVNYSLSYYETKISEYTLLTEYNPKFINTKIKAITTQIEMMYHLNISHMTTNDVHG VVSISYPLEKLVIDIIGEKEKLKHFKTKSNRNMQQLKQVIKSYTPSEQKEIMYYMQSNGS TIDYSLIERLQRDLYAYKHKVSVVT >gi|312979656|gb|ACRM01000009.1| GENE 139 144958 - 145284 358 108 aa, chain + ## HITS:1 COG:no KEGG:SH2085 NR:ns ## KEGG: SH2085 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 3 108 4 109 109 151 80.0 8e-36 MLDKQVIKQFIMDYHKEKASNVVSYDDTDIDDFFSLSDEVEPFALNENTGNQVFFNELDQ LIYAVGTRREYYIFFLLCEGKSMNEIAKIFNLSRERIRQLLNGLLDKL >gi|312979656|gb|ACRM01000009.1| GENE 140 145295 - 145867 730 190 aa, chain + ## HITS:1 COG:SA1820 KEGG:ns NR:ns ## COG: SA1820 COG3728 # Protein_GI_number: 15927588 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Staphylococcus aureus N315 # 1 190 1 189 189 227 63.0 9e-60 MSDLNPRQEKFISEYLKTLNVTQSAIKAGYSPHTATVQGSRLLKNEKVAKYIDEQRKKVI DEGVLSANELLHILSNAAVGDESEVREVVVKRGEFQRNPDTDKMNLVYNEHVEMVEVPIK PSDRLRARDMLGKYHKLFTDKKELSTDTPIFINIGEWPEDEEEEKRKALDEIHEQHPNRT MIINDIPDED >gi|312979656|gb|ACRM01000009.1| GENE 141 146471 - 146659 266 62 aa, chain + ## HITS:1 COG:no KEGG:SH2322 NR:ns ## KEGG: SH2322 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 62 1 62 62 84 75.0 1e-15 MDKINYFLKALVLAIMLRCTMNYVLPTPEKLSFKLLDGLIFGVLVCLLMNWFIGIFKKSS KK >gi|312979656|gb|ACRM01000009.1| GENE 142 146836 - 147036 129 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIITILLLVLIFNLLEALYLSIKCWELKKRNAADKEYKKMVDKVAPLMWVTLVISIIVLV ISWIIS >gi|312979656|gb|ACRM01000009.1| GENE 143 148744 - 149334 269 196 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGTSKNDKNKDYNWFKKLILRYADISAMSLFISPFVFLGLLKLGEIKTHLSEDWELYLNG LLLVFIIPYTIGIITCLLKINIQRDVSKLYTTLILIFSVVFYGFSYIIIYINRDSKLEGS IFFMLIVFSIINSNFIVYILKSLFFNIKNWVFKLDENKNLELIKFRLSFLNKLIVGFISI IASILGIILTLKNILS >gi|312979656|gb|ACRM01000009.1| GENE 144 149711 - 152101 2914 796 aa, chain + ## HITS:1 COG:no KEGG:SAV1435 NR:ns ## KEGG: SAV1435 # Name: ebhB # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 15 639 2874 3510 3890 181 26.0 1e-43 MRNILIYYGVFEGKKPTSVIAYNNEMAKIHDELEAAKTEADRIINDDNATPAQVTAAIAK IDAVQPKLDNAISLLHDKENNSELIEAKRQLDEATAEQDPTPGMTEVTANNYKAKKVEAE QVSRDAQKVIENDDATSGEIAQAIAKVNEATVALKQAKHDLVPDKTLLNNAKNNLETSIN QVPETKNMTSDSVENYRNKLSQAKDTLANAQKVIDNPTSTVDEINKTIENVKRAKDELEQ AKHDLILDYDAIIKKIKQQTDLTDAQKDKLIEKTKASTTSDELENIKHNTDLLNDAMKQL KENIAEKDKVKASINYTDGDKDKKDTYDDALKEAEKLINDAKNPIIDPSVINQLKDKIID AKNNLNGVEKLQNARNNVKHILESLKHLNNAQKDAFNNKIDNENSRDNLDIIINKAKEVD KAMKHLIDEIADNLDIKHSVNYSEASPDKKSAYDELIKKAEDLINKGIGTNASLEEINKL IQDIKKAKYDLDGKHQVELAKQKALEELENEVNRLKDEIDNNPNLSKEDKEKLKSKLERL LENAKGQINNATTLTDLNKIKDNTQKEIDKLKALIDAKTLAKQEIIDFANKKHQEILNNS NLTDAQKQKVVAEIDKALQKALENIDNANDINEINRKLKEGKDNIAKIVAKEITNALIDN KIKEIKARKDLTDEQKAKLIDYLEKLRRDTLKEIDKSHIDDIGSIIQQLMDKLNMLDIDK IENILSHNNKDNNQNQSNIDGIQSNNSHLSKSHRLPDTGSESTSIQLEIELMTLLVGLGL VLKNRRKKQKNNKNKR >gi|312979656|gb|ACRM01000009.1| GENE 145 152191 - 153186 1527 331 aa, chain - ## HITS:1 COG:SA2160 KEGG:ns NR:ns ## COG: SA2160 COG0604 # Protein_GI_number: 15927950 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 1 329 1 330 334 430 64.0 1e-120 MSVNFKAFMVEKDNDGTVTSDFKDLSINDLPEGEVLIKVQYSGINYKDALATVKDSGVLK SYPMVPGIDLAGTVVESDDPTIEKGEEVIITGYDLGVNHYGGFSEYARVKSDWIVKCPEN LTLEEAMIYGTAGYTAGLAIEKLEKANFMTLEGDKVLVRGASGGVGSLAVMMLNELGYKV VASTGNKKATNKLKELGAREVIDRISEDSNEILGKRTWQAAIDPCGGPGTPYIAKHLTNG GGVALIGMTGGNHFETSVFPFILRGVSVVGLDSVMTPMKLRQRVWRRLATDLKSNKLHEI KNTIAFKDLKHSIETVLNHENAGRIIIDFEA >gi|312979656|gb|ACRM01000009.1| GENE 146 153506 - 154360 1188 284 aa, chain + ## HITS:1 COG:SA0331 KEGG:ns NR:ns ## COG: SA0331 COG2822 # Protein_GI_number: 15926044 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted periplasmic lipoprotein involved in iron transport # Organism: Staphylococcus aureus N315 # 39 284 38 284 284 310 77.0 2e-84 MKKLPTILLTSSLLLTACGHNNHDNANEKTSKKSTNENKVALQKAAKEYRKYTNEQLDQF LKGTEEFVSAIKADDIEKAKSLYPKIRMYYERSEPVAEAFGDLDPKIDARLADMKEEKKE DKWTGYHKIEKSLYQENKIDEMTKKDANQLLKDAKELDAKVDTLDITPKLMLQGSVDLLN EVSTSKITGEEEVYSHTDLYDFKANIEGAQKIYELFKPELEKKDKKLSSTIKDNFNKVNQ LLDKYKNNDGYKDYSAVTKEDRKALSDAVNSLGEPLSKMAVVTE >gi|312979656|gb|ACRM01000009.1| GENE 147 154357 - 155583 1308 408 aa, chain + ## HITS:1 COG:SA0332 KEGG:ns NR:ns ## COG: SA0332 COG2837 # Protein_GI_number: 15926045 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted iron-dependent peroxidase # Organism: Staphylococcus aureus N315 # 38 407 1 370 371 593 74.0 1e-169 MSNINHKNHPQMTRRSFLKLLGIGSAGAVIGASSVGSIFSFKSMFDTPESEENDSYEFYG HIQAGITTPTQKNCNFIALDLKSKDQTLIKDMFKKWTQMSVSMTDGAIIGENSNNTLLPP VDTGESIGLDASKLTLTYGVSKSFLKKIGLSSKIPFDFRDIPHFPNDQLDEEYSDGDIMI QACSNDPQVTFHAIHNLIRPFRDIIKIRWSQHGFISTKKNETPRNLMAFKDGTVNPRNNN DLKKYVFIDNGWAENGTYCIIRRIQIHIETWDRTALEEQEATFGRKRSTGAPLTGKKEFD NIDLKAKNNKGKYIIDENAHTRLAREVKTSIKRRAYNYNDGTNAKTGDLDTGLMFICFQK SIQQFIDIQNNLGHNDKLNEYITHRGSASFLVLPGIQKGGYIGETLFS >gi|312979656|gb|ACRM01000009.1| GENE 148 155564 - 157294 1509 576 aa, chain + ## HITS:1 COG:SA0333 KEGG:ns NR:ns ## COG: SA0333 COG0672 # Protein_GI_number: 15926046 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity Fe2+/Pb2+ permease # Organism: Staphylococcus aureus N315 # 1 571 2 571 571 618 57.0 1e-177 MKHYLVKISIITLLIIITRLFSLTSVSVANDSQLNDAYVAISDAKSTLEHKQLNYNEKQN VLNEVKHKIMSLNIKGNKKGKDVKSKLHMIDQATTTNKQIDSLSELTKSLIVYESSVSTD DIDKDIRNLKKQINAKDNIMQEAVKNKDRSKLQSINNMLNQIWKKHETTIRNYDENKYGQ IEVYLMQLRVAIQKEPLDIKKVDNAWKTFKTSIDTVDKKQSNTEKNQYKVTQLNIELEKA IKGIESHQLKQSDEALTKFIQIWPYVEGKIQTKNSSLYTKIEDKIPYYQSILDSSNKDRN KESLIKINSEIKDTVSEDAYSSIDVMIIFLREGLEVLLIILTLTTMTRKVRDTKGTTSVI GGAILGLILSLALALIFIQVLGNNGLLREGMEAALGIIAVVLMYIVGIWMHRRSSAKRWN DMIQQMYHHAISNRNLALLGTIGLISVLREGVEVIIFYMGMMGSIKTLDFVIGIILAIVI LIIFTLLFKTVIRLIPIYFIFRVLSILIFIMAFKMLGISIQKLQLLGMITQHSIEHIPTL NIIGFYPSIETMSAQLIYILLIAYFTLKHTKTKHHI >gi|312979656|gb|ACRM01000009.1| GENE 149 157365 - 158120 462 251 aa, chain - ## HITS:1 COG:SA0334 KEGG:ns NR:ns ## COG: SA0334 COG0805 # Protein_GI_number: 15926047 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway component TatC # Organism: Staphylococcus aureus N315 # 37 250 1 214 220 195 59.0 8e-50 MRWRKHPVNILNNSETNQTSSTLLEHFEELRRRLINILISFLITLPLVYISSKWWITTFV YHIKRTQVVLHTFSFTEMIQIYILIVSFVTLCLVLPIIFYQLWAFISPGLHQRERFFIYK YSLLCTALFIIGVGFAYTIGFPLIIKFSLTLSKTMYIQPVIGFNAYLHELIRWLFIFGVV FQLPMFCMGLVKMDVIDIKQLHQYRKYIYFTCFIIASILAPPDITLNLFLTLPLIILFEI SILLTKITTRH >gi|312979656|gb|ACRM01000009.1| GENE 150 158062 - 158286 360 74 aa, chain - ## HITS:1 COG:SA0335 KEGG:ns NR:ns ## COG: SA0335 COG1826 # Protein_GI_number: 15926048 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Sec-independent protein secretion pathway components # Organism: Staphylococcus aureus N315 # 1 72 1 71 71 94 70.0 5e-20 MFHELFILGMAGPTSLVIISIVALIIFGPKKLPQFGKAIGSTLREFKSAAEHIDSDEVEE TPSKHSKQQRDKSN >gi|312979656|gb|ACRM01000009.1| GENE 151 158385 - 158978 655 197 aa, chain + ## HITS:1 COG:SA2159 KEGG:ns NR:ns ## COG: SA2159 COG0454 # Protein_GI_number: 15927949 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 31 197 5 171 171 182 58.0 4e-46 MFEMCLIRNKILSGFEKNKYNKKRGNMKEEIEEIKKDNVSELRKIAEKTFYDTFKGSYTD ENFKKFFKENYNETKLLSEIEHHQSFHYFYKVDDEIAGYLKLNINETQTEPKGDQYLEIQ RIYFDKDYQGGGRGSQFIQLAIDKAREYNKSKIWLGVWENNPSAIDFYKKQGFEITGHHD FINGNVIDMDLIMEKEI >gi|312979656|gb|ACRM01000009.1| GENE 152 159038 - 160720 1509 560 aa, chain - ## HITS:1 COG:SA2157 KEGG:ns NR:ns ## COG: SA2157 COG1887 # Protein_GI_number: 15927947 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Staphylococcus aureus N315 # 1 549 1 543 557 462 46.0 1e-130 MIKQINISNMSHLDIQLNKAKSAGYSHFIPYSNEIKINQDMLNAVSLGEHSIAVDYTIHG VYLNDCRYFGNDKLSFLAWMNNINHYPNIIYNIDTALIYLSKYQIQSIMDLAVITILKNE VDIDGHVVFDFIEELQTSSSFWNSLDTREIKIANHFDLNKLAYIHGHSIPFPKYKHPLAD ETLRFADSWLVTTKFKLPKWMYNKIHQRAIQNHKKLSYIYTKDTSKLKNHVVFLGFDYGY RGNSKYLFNYFVKRNPTTEAYYITDDRHGPYFLPIDAEHNKELIETAKIVVIESYMPEAY QPNGTVIQLWHGTPIKELFLDSKEPYQNQNIYNYRARKYNKWKHQSYVLLDSKASEGLFE TAFPNETVQFLPFGYPRVSYLLNYKDNQNQQRKIREKLKLNHTKPVLLYAPTWHKNTESF TPLTMTPELLEKYYVIYKGHIEGDDAIPEGVIEAPIDIETQDLILISDIVLTDYSSIIFD ALTIDKKVCLYTPNHKEYKEERGVYIDVLNSLAKVWYTDEEVLLNHLIHDTIPTIHRHAL INRNNQSLKKTNSTYERYFR >gi|312979656|gb|ACRM01000009.1| GENE 153 161076 - 162677 2254 533 aa, chain + ## HITS:1 COG:SA2156 KEGG:ns NR:ns ## COG: SA2156 COG1620 # Protein_GI_number: 15927946 # Func_class: C Energy production and conversion # Function: L-lactate permease # Organism: Staphylococcus aureus N315 # 1 532 1 532 532 718 83.0 0 MLVHSFNPFGNLALSSLIAAIPIILFLLCLTVFKMKGIYAAITTLVVTLLIALPFFKLPG GIATGGVIEGFYQGIIPIGYIVIMAVLLYKTTQESGQFSTIQDSIMSISQDQRIQLLLIG FAFNGFLEGAAGFGVPIAICALLLAQLGFKPLQAAMLCLIANAASGAFGAIGIPVGIVNT LHLPGHVEAMSVSQVSTLTLAIINFIIPFLLIFIIDGFKGIKETLPQILVASITYTVLQG LITVFVGPELADIIPPLVTMGVLAVFSKKFQPKNIFRIQKDVKPEAVTPHSGKEILYAWS PFIILTVIVMIWSATFFKNLFAPNGPLSALVFNFNLPGTYSDVTHKPIMLTFNFIGQTGT AILLTIIITVLMSKKVSFGDAGRLFVEAFKELWLPILTICFILAISKITTYGGLSAAMGQ GIAKAGGVFPILSPILGWIGVFMTGSVVNNNSLFAPIQASVAQQIGTSAPLLVAANTVGG VAAKLISPQSIAIATAAVKQVGKESELLKMTLKYSIGLLIFICIWTFILSIFM >gi|312979656|gb|ACRM01000009.1| GENE 154 162727 - 163872 1134 381 aa, chain - ## HITS:1 COG:HI1698 KEGG:ns NR:ns ## COG: HI1698 COG0438 # Protein_GI_number: 16273585 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Haemophilus influenzae # 1 380 1 353 353 103 25.0 5e-22 MKSFTFLMHNIYALGGTVKAMTELANTLADKGHNVEIISIFRAKDMPYFKLNSSIKIKSL VDYRLKPQNVISIFMNRLNKYTPLLKPIYLSKHEPGLNQFSKYIEHKLIRAINDIDTDVL IGTRASFNIFISKYYHGHAMTIGMEHMNLNAYPKAYRQEILDAYQHLDALTTLTHTDKNH YESFIETPVYVVPNIIRTKKLNLPKKNIILSAGRLEYEKGYDILIESVQLIKDTLRQKNY KIEIYGEGQEHQNLQETINHYQLNDLITIHPATQHLNEKLAQSRMTVVPSRNEGFGMVIL EAMAQDNIVISFKDTLGPSQLIQHNKNGYLADYANAQSLAKYINLAIQKRTHSENMIKSS HQTLEHYSPDKIYDYFYSIFK >gi|312979656|gb|ACRM01000009.1| GENE 155 164184 - 165662 1764 492 aa, chain + ## HITS:1 COG:SA2155 KEGG:ns NR:ns ## COG: SA2155 COG0579 # Protein_GI_number: 15927945 # Func_class: R General function prediction only # Function: Predicted dehydrogenase # Organism: Staphylococcus aureus N315 # 1 492 20 511 511 772 73.0 0 MSIEHSKTDVILIGGGIMSATLGTLLKDLSPEKEIKIFEKLEQSGEESSNVWNNAGTGHS ALCELNYTKENKDGSIDVTKAIKINEQFQVSKQFWAYLVRTGQLEHPGNFIQSVPHMSFV KGILNIDFLKKRVKALKENILFQKMEITEDRDKIVEWVPLMVEGRTSPVPIALSRDETGT DVNFGALTKKLISNLKEHKVDVTYHQEVQNIERLNNGYWKVTVKDLKSNTIHTFESEFVF IGAGGASLPLLQKTGIKQSKHVGGFPVSGLFLRCKNKDVIERHYAKVYGKADVGAPPMSV PHLDTRFVNGERSLLFGPFAGFSPKFLKTGSNLDLIRSVKPNNIVTMLTAGVKEFNLTKY LVSQLMLSHKDRMNDLRIFLPNARDEDWEVVIAGQRVQVIKDTEDSKGNLQFGTEVITSN DGSLAALLGASPGASTAVDIMLDVLKRCYKNEFDAWIPKIKEMIPSYGLKLNEHEEVYNA VNKEVRKYLNVK >gi|312979656|gb|ACRM01000009.1| GENE 156 165714 - 167087 1192 457 aa, chain - ## HITS:1 COG:SA2152 KEGG:ns NR:ns ## COG: SA2152 COG0642 # Protein_GI_number: 15927942 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 454 1 454 457 512 64.0 1e-145 MFKTLYSRIAIYTITVIIFSALVSFFIANIHYHFNLKENNDTKIMRTLKEARTYEHQLPS KYVKSYFQHLGQMNYQIVTVDKQGQKTFYGEPFRKDTLSSSSINQVMRGHDYHGIKNKPF ELFVTGFFDNETDNTVGIRFYEDHEPIAVFMRPDIGKTFGEFRIFLLVLLIFLLLISISL VIASTYSIIKPIKKLKMATEQLMNENFETPISHTRHDEIGTLQFRFDTMRQSLKQLDDMR QHFVQNVSHEIKTPLTHIERLLTELQFAHSEDERHSLINDIHLEITRLSNLIKELLLLSE LDNANHLSVDDNLELSSLITDIIRHEQYTIDDKSLMLLSDMHKIYFQGNRRLLHQAFSNL IQNAIKYSDINGIIDITLNQENNHIIFAVTNEGQTISKQAIPHLFDRFYKLNASDNSNGL GLAITKSIIDLHHGKICVSSDSKNGTTFKILFPHILF >gi|312979656|gb|ACRM01000009.1| GENE 157 167080 - 167754 686 224 aa, chain - ## HITS:1 COG:SA2151 KEGG:ns NR:ns ## COG: SA2151 COG0745 # Protein_GI_number: 15927941 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 318 68.0 4e-87 MIKCLIVDDDPKLLHYVSKHLEADHIKTVTHSSGEQALKYLNHHRVDIAVVDIMMTGMDG FELCQLLKDRYQLPVIMLTARDALSDKERAFVSGTDDYVTKPFEIKELLFRIRAVLRRYQ INTQNKIEIGNVILNDEFMEVSVASKKMNLPTKEFQLLFLLCTHPRQIYTRESIIEKIWG FDYTGDERTVDVHIKRLRTRLKKLEATIEIQTVRGQGYKVNKDV >gi|312979656|gb|ACRM01000009.1| GENE 158 167884 - 168939 1234 351 aa, chain + ## HITS:1 COG:SA2150 KEGG:ns NR:ns ## COG: SA2150 COG0577 # Protein_GI_number: 15927940 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 351 1 351 351 357 58.0 1e-98 MNLAWKEIKFYKFRYILIMLIIFLLGSMVLFINGLAQGLARENVSFLNNQNAQTYIIEKM KEPKIETSQLDSNQQIKIEDIINQQATHLGPQTLKLKQQDQDILTFSTSKEDRPSLKEGR YPNHSYEVAINDKLTGQDVKKGDMIKFKGHKEAYKVSGIIEDTMYSHSSMVMMNHSDFKA LNKNYSTFYPVKELSKKDKNRINDISNVTTVSEKTLTDNIASYQAEQMPLNLMIISLFVI TAIVLSAFFYVMTIQKISQIGILKAVGIKTRHLLSSLIIEIILTTMVGVILATVLILILS LIMPVTMPFYLGYGTILLMIVIFLIVGFIGALLSFIKVVKVDPIDAIGGME >gi|312979656|gb|ACRM01000009.1| GENE 159 168939 - 169604 297 221 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 220 2 218 245 119 32 1e-25 MTLKLEHISKTFGEGSAKTKVLKDINLEVQPGEFIILNGASGSGKSTLLNILGGLLTPTD GKILYEGHDLYSNYKNSTELRLNDIGFIFQASHLVPYLTVEEQLTVIAKEAGVNKKEAVS NAKYLLTEIGLKDRLNAFPHMLSGGEKQRVAIMRAFTNNPKIILADEPTASLDASRATKV VEMIKERIKSEQMVGIMITHDERLFDYADRVVKLEDGKILN >gi|312979656|gb|ACRM01000009.1| GENE 160 169674 - 170630 529 318 aa, chain - ## HITS:1 COG:SA2148 KEGG:ns NR:ns ## COG: SA2148 COG1434 # Protein_GI_number: 15927938 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 17 305 17 305 322 235 48.0 1e-61 MLAIILLFIVLIIILSVLFNIRHFISLSFFITSVILCFTISLINIMTMTLPTGLFILIII STIGLLVKHSHLFKIKKGTCFLNKMFRRLINGVLFIGIFIYLSTIPLPILNGMFLWIALI LFSACYAFIIYLIFSSAFERAKTHKQYDMILILGAGIFNETVTPMLASRLDRALEIYKVQ SHNCNILVSGGQGPDEPISEALAMKNYLIKCGVSSSSILMESQSSSTYENFLYSKSFINT SFENVPSILCVTSQFHILRALRFAQKLNIKIIGLGSSTPYHFLDKALLRDFLALIYQYKL LLTLYLVGVFIASIWILL >gi|312979656|gb|ACRM01000009.1| GENE 161 170802 - 171263 519 153 aa, chain + ## HITS:1 COG:SA2147 KEGG:ns NR:ns ## COG: SA2147 COG1846 # Protein_GI_number: 15927937 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 149 1 148 151 126 52.0 2e-29 MSRISKNHIEFMKHFIDETNTLTSKLLKDQQVKYGVSTEQSNVLRLLSHHQALSITEITE KQGVNKAAVSRRIKKLIESDFVALQKPNNKIDQRLKYIVLTEKGRQYTEENNEIISQIVN DMVKDLSSKDIEKALSVLYIIDERVKHFNAKVK >gi|312979656|gb|ACRM01000009.1| GENE 162 171363 - 172727 1290 454 aa, chain + ## HITS:1 COG:SA2146 KEGG:ns NR:ns ## COG: SA2146 COG4640 # Protein_GI_number: 15927936 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 441 1 446 460 360 50.0 2e-99 MKQCPYCGQELNKSDRQCSNCRNMIPKEKNKATSSSQSEQSNLKFKKFIPWVIITFIIIL IGIVFILLKNFNSPEAQTKILVNAIDNNDAQKVATLISTKDVPVDDEEASVYIQYIKDEV GMMKFIHDVKHTTDKLNKSNHDSAYIQTKTDKNVLKISKNGTRFLIFNNMSYRPPTKTVI VKPKIDTKYEFKAGGKRRVIHAKANQATSIGKYIPGVYAIDAEKDTEYGHFTGQMKFDFR YAKGNTVEVNENFNEASLKVKLKGKSDLDKNTLKVTINDKEMKYDASKIYGPYPQNKDIS VSATGMVKDKTFTSTSKTIKAKDLGNINSAILDFDEDKISDYVSKKTEEENILRVTLEPF FNQYTYALNHAINQQNFEIISPFLKNKSDAYIDIKNHLSDSKHFEFSQLLSATQSGDIIK AKVQQINQRGEIEYVTYEIEEDKDNGILQIINIK >gi|312979656|gb|ACRM01000009.1| GENE 163 172748 - 173953 1038 401 aa, chain + ## HITS:1 COG:SA2145 KEGG:ns NR:ns ## COG: SA2145 COG0477 # Protein_GI_number: 15927935 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 8 401 8 402 402 440 70.0 1e-123 MEQRHNQDKHSLLFIIILGMLTAIGPLAIDMFLPGLPELKNDFNTTTANAQLTLSFFMIG LGIGNLFVGPISDSVGRKKPLIIVITIFTLASLGIIFVHNIWLMIILRLLQGITGGGAAV ISRAIASDLYKGNELTKFLSLLMLVNGVAPVIAPALGGIILSVAVWRVVFVILTIFGILM IMGSLTKIPESLSLEYRDSSSIKVIFQNFKSLLGTPRFVLPMLIQGVSFILLFSYISASP FLVQKIYGVSPLHFSWMFAGIGITLIISSQLTGKLVDYIHTQTLLRLLTCIQIIGVCIVS LTLIQHGPFIFLVIGFITLVAPVTGVATLGFSIAMEESTTGNGSASSLLGLVQFLFGGIV TPLVNVKGEYNSTPYLTIIISAIVILIILHLINFKVFKTKR >gi|312979656|gb|ACRM01000009.1| GENE 164 174013 - 174564 300 183 aa, chain - ## HITS:1 COG:SA2144 KEGG:ns NR:ns ## COG: SA2144 COG1309 # Protein_GI_number: 15927934 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 182 1 182 184 176 50.0 2e-44 MKLKAKYKIIISMIDLLEDYPFEQISIKMICAKCKINRSTFYDNFQDKYDLLSTIQSYHL NKYEKLLKALSNNFHNIKKEPEKVFKFFHIILKYIYRKKSFFHAIFISNPNRSLVMDYLD ITKKYYDKILTENETLIQNRELFISYTISGQIGVILYWLRSGCQESPKEVANSLLSNTIK LQR >gi|312979656|gb|ACRM01000009.1| GENE 165 174686 - 175333 852 215 aa, chain + ## HITS:1 COG:SA2143 KEGG:ns NR:ns ## COG: SA2143 COG1566 # Protein_GI_number: 15927933 # Func_class: V Defense mechanisms # Function: Multidrug resistance efflux pump # Organism: Staphylococcus aureus N315 # 1 215 1 215 215 285 75.0 5e-77 MKKMVLINIITIVALVIIGVVGFYFYHNATSYVTTDNAKVDGNQIKIASPASGQIKSFDA KQGDKLKKGDTVAEVTAQGQDGQTQDQKIKMPQDGTIAKTDGMEGSIAQAGSPIAYAYNL DDLYITANIDENDLSSIEKGDKVDVTIDGQDSKIDGKIKEIGKATANSFSLMPSSNSDGN YTKVSQVIPVKISLDSQPSKNVVPGMNAEVKIHKD >gi|312979656|gb|ACRM01000009.1| GENE 166 175346 - 177439 2566 697 aa, chain + ## HITS:1 COG:SA2142 KEGG:ns NR:ns ## COG: SA2142 COG0477 # Protein_GI_number: 15927932 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 695 1 640 643 832 66.0 0 MTVTFIIGYIVAAVILVGLINLFVLKSRNKSKLNQSKGQQVNEESKSQNNPSKFKMSDLE QNNDAKNASSSQISEEKKRYFNNDQSHYKEDNDINNDKRKNHFEEEQEQQDSSSEQIHPE QKQTSYSLHYSDDEQHNAHAEDTVNHNDRDVNNQHLSKDSIYEPINPDSQEGRVNERIKD QTQDFVFGAGITRGKILAAMLFGMFIAILNQTLLNVALPRINTEFNISASTGQWLMTGFM LVNGILIPISAFLFNKYSYRKLFLIALLLFTIGSLVCGISTNFPIMMGGRVLQAIGAGIL MPLGSNVIVTIFPPEKRGVAMGTMGIAMILAPAIGPTLSGYIVQNYHWNVMFYMMFILGL LAFLFGLAWFKIYQKTINPKADYRGIVYSTIGFGALLYGFSEAGNKGWGSTEIIIMFIIG VVFIILFAIRELTMKAPMLNLEVLKSPTYTLTTIINMVVMMSLFGGMILLPLYLQNLRGF SALDSGLLLLPGSLLMGVLGPVAGKLLDTIGLKPLALFGIAVMTYGTYELTKLNMDTSYL HIMSIYVIRSLGMAFVMMPLMTAAINALPPRLISHGNAFLNTMRQLAGSIGTAILVTVMT TQSTNHLNAFATELDKTNPVIQDHVREMAAQYGGQQGALQVILTYVNKLASIEGINDAFW IATALSVLAFILSLFLKGKKGAEAEHERLMSKESNKF >gi|312979656|gb|ACRM01000009.1| GENE 167 177518 - 178147 548 209 aa, chain - ## HITS:1 COG:no KEGG:SAS2242 NR:ns ## KEGG: SAS2242 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MSSA476 # Pathway: not_defined # 1 209 1 212 212 189 49.0 5e-47 MQNPNRYQTNRPPYARVNQQAYYGKKKNSWISLIIHIIILILVGITCYSMYKQPILNFVL ANQAIDFSEIKNFQNTTTQIGPLNINISEVANLQGVIDKFILAFNIFFVLCIGSMIISIL TIVFNRTILKVINFIIIAVALMIAFSFSYTIQMLGKQISQNLHHFFLDLPPNQIITEADA IHNALILLSSSLALLFISFFFRNRHPRIK >gi|312979656|gb|ACRM01000009.1| GENE 168 178340 - 179239 784 299 aa, chain + ## HITS:1 COG:SA2140 KEGG:ns NR:ns ## COG: SA2140 COG0657 # Protein_GI_number: 15927930 # Func_class: I Lipid transport and metabolism # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 299 2 300 306 372 59.0 1e-103 MKTRMVNRIVNKYLLHNRSIQFKSKDEFESFMERRKDINRAKHKQPPTLNVKANLDKLSL GDMQVFRFNFRHETKKKILYIHGGYNTLQPSPFHWRLMDKLALNTLYEVVLPIYPKAPEF HLKDTFKAINNVYESLLSEVNNENIVIMGDGTGGALALSYVQQLVENGKPLPYKLCLISP MLDATMTNPQITENLVEKDRFVNIQGLQNIMNVWSDKEPLSNPLISPIYGIKQGLPPIIM FGGGKEIYYPDMQRLAYELETYNQSIQFFEYPKMFHDFALFPIHESHKVIKQINKAIHE >gi|312979656|gb|ACRM01000009.1| GENE 169 179292 - 179708 484 138 aa, chain - ## HITS:1 COG:no KEGG:SH0709 NR:ns ## KEGG: SH0709 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 129 1 127 131 79 41.0 3e-14 MTETISEILENTLFDLSDTLKLHLIELNENRSLFMNGPSQELIQRTFNISFYQGQKQAIE TLDREIKTTTDENDLIANLKRYSQDVEQQLLNVIELHTTTYEPEENLRLAQSLDTYYHCK GQHDIISELLLQINKYSI >gi|312979656|gb|ACRM01000009.1| GENE 170 179708 - 180187 603 159 aa, chain - ## HITS:1 COG:SA2138 KEGG:ns NR:ns ## COG: SA2138 COG0824 # Protein_GI_number: 15927928 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Staphylococcus aureus N315 # 5 157 6 158 161 157 55.0 6e-39 MNYPFIIHKSVVSSQVDFNQHMHDAEYNSIFSEVISEFNHYNGLSLKEREALNYTTFTVE EHTTYLKELHFEESFSVRVRIYDYDEKRVHFFLELFKNDETLAATSEIMMMGINRLTRRP ASFPTHYKSNIQIYYDSQYDQRWPKSLGHQIGIPKKGEA >gi|312979656|gb|ACRM01000009.1| GENE 171 180309 - 181256 778 315 aa, chain + ## HITS:1 COG:SA2137 KEGG:ns NR:ns ## COG: SA2137 COG0598 # Protein_GI_number: 15927927 # Func_class: P Inorganic ion transport and metabolism # Function: Mg2+ and Co2+ transporters # Organism: Staphylococcus aureus N315 # 1 315 1 315 315 398 65.0 1e-111 MTMTIRYQTKNEPLTQVEQISDVPNDATIVWLDFEEATSEENDFLIENYNFNYLELEDAI KGVPRVKYKSYDDYQYMVFHSMHKDNFTPIALNVFLDGKTLITYHQHHFESLMEVVKMNA RKHDPDLDCADIVIHILDMMVDKYFDFVYTIEDEVYNFEDAHVDDTHSKKVMDNVFQLRS NLIKIKRVLFPMQELVNTIKTEGNLIVDYKHSMYIQHIDDHIIKQNNIIRTSQEMTNEIR ENFESYSSFRMNSIMQVLTLVSVIFSPLTFIVGVYGMNFEYMPELKWHYGYFICLTIMLL ISIALILFFKKKKWF >gi|312979656|gb|ACRM01000009.1| GENE 172 181291 - 182340 1232 349 aa, chain + ## HITS:1 COG:SA2136 KEGG:ns NR:ns ## COG: SA2136 COG1304 # Protein_GI_number: 15927926 # Func_class: C Energy production and conversion # Function: L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases # Organism: Staphylococcus aureus N315 # 1 349 1 349 349 547 78.0 1e-155 MRDIQREQRKNEHVEIAMAQQDVPQSDFDRMRFVHHSIPNINVNQVDLTSHTSNFDMTFP LYINAMTGGSDWTKTINEKLAVVARETGLAMAVGSTHAALRNPKMAESFSIVRKTNPEGI IFSNVGADVPVDKAVKAVELLDAQALQVHVNAPQELVMPEGNREFSTWLENVEAIVQRVS VPVIIKEVGFGMSKELLQSLVNIGVTYVDVSGKGGTNFVTIENERRSNKDMDYLSNWGQS TVESLLESISYQNKLNVFASGGLRTPLDAIKSLALGAKAVGMSRPFLNQVEHAGITSTIE YVESFIDHMKSIMTMLDAKDINDLKQSKIVFDSKLMSWIEQRHLKVERG >gi|312979656|gb|ACRM01000009.1| GENE 173 182401 - 183009 763 202 aa, chain - ## HITS:1 COG:SA2134 KEGG:ns NR:ns ## COG: SA2134 COG2094 # Protein_GI_number: 15927924 # Func_class: L Replication, recombination and repair # Function: 3-methyladenine DNA glycosylase # Organism: Staphylococcus aureus N315 # 1 202 1 202 202 328 75.0 4e-90 MDFVNKPTIETAKSLLGVKISYQDHTQTYSGYIVETEAYLGFKDKAAHGFGGKQTPKVTS LYERGGTIYGHVMHTHLLINLVTREEGIPEGVLIRAVEPDDGIEGMKINRNKSGFELTNG PGKWTKAFNIPRAIDGSTINQCRLSIDVKNRKFPREIEESARIGIPNKGEWTEKHLRYTV KGNPYVSRMRKSDCLLPEETWK >gi|312979656|gb|ACRM01000009.1| GENE 174 183304 - 183630 466 108 aa, chain + ## HITS:1 COG:SA2130 KEGG:ns NR:ns ## COG: SA2130 COG1742 # Protein_GI_number: 15927919 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 108 1 108 108 144 76.0 3e-35 MIYSIFIFVLSGLCEIGGGYLIWLWLREGQSSWLGCIGGLVLVLYGVIATFQVFPTFGRV YAAYGGVFIIMSIIWSFVFDKQIPDKYDVLGAVVCIIGVLIMILPNRA >gi|312979656|gb|ACRM01000009.1| GENE 175 183660 - 184670 331 336 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900011|ref|NP_344615.1| aldose 1-epimerase [Streptococcus pneumoniae TIGR4] # 29 336 35 345 345 132 33 2e-29 MIVEVENQNHGIDLIKIDNDDTYIVFTNYGARIVCWKYHDNNIVLGNKVEADEFYPENPY KFGATIGRYAGRIENASFNLNNKYYQLEANEMTNQLHGGSNGLDRRLFDYEIQNNITNIK VIFKLQIQSKEDGYPGDMMIKVIHTYDVEHRWTIEYKATSNEDTLFNPTNHVYFNLNRDN NVIDNHSIISEQLKMYPIDQNHLISSQQPIDLLERFNHRPIQFQDIFNSEDKQIKEQIHF NKGLDHPFDIGHHRLIVENNEFALDVETTMTNIVIFTFNDTSEWKSDFNIYKPHSGVALE TQYLPNDINNEGNKAKSILKANVPFYAKTIYHISEK >gi|312979656|gb|ACRM01000009.1| GENE 176 184726 - 185382 679 218 aa, chain - ## HITS:1 COG:SA2128 KEGG:ns NR:ns ## COG: SA2128 COG2258 # Protein_GI_number: 15927917 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 216 1 216 217 286 65.0 2e-77 MIPVYAISTGKIETLNYDQKRPMHSALNKTMFSGKMWLSYTGFSEDEQAYKDHGGPHKAV CCFSKENYAMYKNDINILPDYAMFGENLTLVDLDENDVYFGNQYQLGEAIVEVSEIREPC WKIQRKYGIKHLVKRMSSSGKTGFYMRVLKEGYVQQQDHLLLLKTAESPTRLSVQNLNDI YYNDRENIDRLNQAINNPYLSPKRIEKLKLLKEKAMNK >gi|312979656|gb|ACRM01000009.1| GENE 177 185542 - 186231 834 229 aa, chain + ## HITS:1 COG:SA2127 KEGG:ns NR:ns ## COG: SA2127 COG0120 # Protein_GI_number: 15927916 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 313 66.0 2e-85 MKDAKELKLMTTDDAVAQIQDNMILGIGTGSTIELLIPKIAERIQQDNLNVTGVCTSNKS EFLAKQYNINVVDINDITYINLAIDGADEIDSDLNLIKGGGGALFREKVIDEMARKFIVL ADESKMVNYLGETFKLPIEVDKFNWLLVSKKIEAYHDISVERRMNEDIPFITDNGNYILD CELKSKIDPYQLHEFLIHLTGVLETGYFLDMTTQAIIGTQEGIKVINKK >gi|312979656|gb|ACRM01000009.1| GENE 178 186265 - 187353 1284 362 aa, chain - ## HITS:1 COG:no KEGG:SH0722 NR:ns ## KEGG: SH0722 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 10 361 1 357 363 488 76.0 1e-136 MVTLMEVTYMKTKRISGFQWALTIFVFFVVTMALSLILRDFQASIGIKRFVFSINNLAPF IAAIICIIAFKNKRTQLAGLNFSIDIRVIERIILALILPLIIFIIGMMSFNRFADSFILL QANDLSVSVFTIIIGHIFMAFFAEFGFRSYLQNIVESKVNTFFASIIVGLMYSIWTINTT YGMQYAGYHFLYTFMFSMIVGELIRATKGRTIYIAMLFHAAMTFAQVFLFSEETGDLFSM KVIALSTTIVGIIFILLSLVIRFILYKTTNQSLDEVEPNNYLDHVNDDTDDSNKTSNSEL DKKETLHQSLQENNVTHTQTNESEVQDGDHHLKSSSKYAEDRRSSVVDDVKEEINDINKS NK >gi|312979656|gb|ACRM01000009.1| GENE 179 187585 - 188520 1159 311 aa, chain + ## HITS:1 COG:SA2125 KEGG:ns NR:ns ## COG: SA2125 COG0010 # Protein_GI_number: 15927914 # Func_class: E Amino acid transport and metabolism # Function: Arginase/agmatinase/formimionoglutamate hydrolase, arginase family # Organism: Staphylococcus aureus N315 # 1 311 1 311 311 424 63.0 1e-118 MYSKSNPKLWKGRVDSQNDPKQFKHFQTVTFANLENIENQFDKVGVGLLGYAVDKGIELN EGRMGAKKGPDEIKKAFAQLPDLSECESLVDYGNVEYTKGSLSEVQEEMGRLAARVIQQH HQSFFIGGGHDIAYAQYLATRHIYPDASIGIINIDSHFETRADVQSNSGTMFRQILEKDD NIDYLVLGLSQGRNTRSLYEYAEEKGIIYVYADEILNDLSPTIKDKIERFIHQHETIMFT ISMDAIDSAFAPGVSEPTVLGLNPHSVFNIGKRVILSGKTSSISIAEVNPNYDIDHRTAQ LAANFIHHFIE >gi|312979656|gb|ACRM01000009.1| GENE 180 188677 - 189795 1367 372 aa, chain + ## HITS:1 COG:SA2120 KEGG:ns NR:ns ## COG: SA2120 COG1473 # Protein_GI_number: 15927909 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 5 371 5 371 373 502 66.0 1e-142 MTSFNDVVKWRRMFHQYPELSKYEYKTTQRIKDILTSYNIKMIDIPMETGLVAEIGQGEK CIAVRTDIDALPIQEQVSQDFTSTNDEVMHACGHDIHMASILAIATKLKEEEEQLNGRVR FLFQPAEELGYGAKVMAKTNALDDVQAIIGFHNYPTLDIGEFAIKSGPITSAVDRFEFKI HGKGAHAAKPEQGNDPVMALGQLITSLQTIISRNLSAFDSAVITIGEVSSGNTWNVIADN AYVQGTVRSSKPDVQDYIEQRMHDIAKGLEQLFNIEIELIYTRLPGAVINDVELTKHAKE AAKKVGYTVIDLEHPYTIGEDFSGLLEHHPGVFAFIGSNSEYDLHHPKYNPDERILEKIP DYFIELIYQLLA >gi|312979656|gb|ACRM01000009.1| GENE 181 189884 - 190765 1433 293 aa, chain + ## HITS:1 COG:SA2119 KEGG:ns NR:ns ## COG: SA2119 COG1028 # Protein_GI_number: 15927908 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 293 1 293 293 457 79.0 1e-128 MGAQDPRTKFKDSDYKKQEQETPGYQYKMSPKPDCGEESYEGHGRLQDYKMLVTGGDSGI GRAAAIAYAKEGADVVLNYLPSEEQDAQEVKKVIEKAGRKAVLIPGDVRNEQFNYDLVKQ AYNELGGLDNITLVAGHQQYHDDIHEFTTEQFAETFETNVYPIFWTAQVATKYLKPGASI TTTSSVQGYKPAAILHDYAASKAAIISLTKSLSEEFGDKGIRVNSVAPGPFWSPLQISGG QPQSAIPEFGQATPLGRAGQPVECVGPYVLFASEDGSYLTGQVHSVTGGIQID >gi|312979656|gb|ACRM01000009.1| GENE 182 190843 - 191454 786 203 aa, chain + ## HITS:1 COG:SA2452 KEGG:ns NR:ns ## COG: SA2452 COG1853 # Protein_GI_number: 15928245 # Func_class: R General function prediction only # Function: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family # Organism: Staphylococcus aureus N315 # 1 202 1 202 203 257 61.0 1e-68 MKEINPNQLSDIQNYKLLSGSVIPRPIAFVTSEDEKGNLNGAPFSFFNVVNNKPPMIAIA AQRSNGKRKDTAINIEKTKEFVVHITDEFNIEDINETAAPLKYEDNELERTSLTLISSSI IQTPAVKEANIRFECKLDQMIQLGTKNDGADLIIGEVVMYHINEDVYFEDSKIDFNQLKP VARLAGNNYSKLGDTFTIERPES >gi|312979656|gb|ACRM01000009.1| GENE 183 191494 - 192843 1525 449 aa, chain + ## HITS:1 COG:SA2117 KEGG:ns NR:ns ## COG: SA2117 COG1757 # Protein_GI_number: 15927906 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Staphylococcus aureus N315 # 25 447 28 450 459 608 81.0 1e-174 MNLVPLNINSISINESRLNMGEGNKGHAWALLPLVLFIALFLGIGIATGDFSNMPLNVAI TITVIVALMMNRKEKFSKKIEIFTQGAGHSNIVLMVFIFILAGAFSTTAEKMGGVTSTVN LGLSLIPQNFIIVGLFIICMFVSISMGTSVGTIAALAPVGFGFSQATDISAMLAMGTVVG GAMFGDNLSMISDTTIAAVRTQKTKMSDKFKVNFWIVLPGAILTIIILFFLTNGVHVDHS KQYDYNLVKVIPYILVLVLAVIGVNVIVVLISGTILSGIIGLIDGSFNWKGLLTAISKGI IGMEDIAIIALLIGGLVGLIQHNGGVEWLLNFVKSKVKSKRGAEFGIASLVSVADIATAN NTISIIMSGPLAKNIADEYEVDPRKSASLLDIFAGCFQGLLPYSPQLIAAAGVAGISPFS MMPYCIYSILLGICGILAIVFRFPRLKTK >gi|312979656|gb|ACRM01000009.1| GENE 184 192965 - 193483 631 172 aa, chain + ## HITS:1 COG:SA2116 KEGG:ns NR:ns ## COG: SA2116 COG3832 # Protein_GI_number: 15927905 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 162 1 163 168 210 71.0 1e-54 MAKYNVENEQVEIHIERLFKYSPELVYSAWTDINLLKQWFMTSQRTNKLFDADIHEGGQY RIVDARNGKQNVIQGKYEELVSDEYIKMTIGMPELSDSQDVIEVEFEERESGGTQMFFYY QSIVEKERRLTALEYKHKKKEYHDSTAHGLELMFDRMNEVLDQYVEDNDMLL >gi|312979656|gb|ACRM01000009.1| GENE 185 193544 - 194302 738 252 aa, chain - ## HITS:1 COG:SA2115 KEGG:ns NR:ns ## COG: SA2115 COG1737 # Protein_GI_number: 15927904 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 245 1 245 254 341 76.0 8e-94 MLLDERVNANFDKLNDNDLHIAHFVNTHIEQCKTLKIQELSQYTHASNATIHRFTRKLGF DGYSDFKSYLKFESQSLHEVPTDSIKQFKQEIETTFTYLERVNFNLITEKIDKATNVYLY GTGRAQKNVAEEAQRILLTMHKNVIVLHDEHEIKMVLNYSNEDDLFFVISLSGETHQLTE ITNLLQLRQRYFISVTTMKDNTLAQKANYNVYVSSHTFYLYNDIDYSSFINYHIFFETLL RKYNERKENGEL >gi|312979656|gb|ACRM01000009.1| GENE 186 194504 - 196111 2014 535 aa, chain + ## HITS:1 COG:SA2114_1 KEGG:ns NR:ns ## COG: SA2114_1 COG1263 # Protein_GI_number: 15927903 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 1 454 1 454 454 761 85.0 0 MNAIKRFGSAMIVPVLMFAFFGIILGFATLFKNPTIMGGLADSHTFWFKFWSVIESGGWV IFNHMEIVFVVGLPISLAKKAPGHAALAALMGYLMFNTFINAILTQWPHTFGANLQKGVE NVTGLKAIAGIPTLDTNILGGIIISAIVTWIHNRYYSKKLPEMLGVFQGLTFVVTISFFV MLLVAAITCVVWPTIQSGIESLQHFIIASGYIGVWLYHFLERVLIPTGLHHFVYAPIEVG PVVAKDGLKAEWFRHLNQFAESSKPLKDQFHYGFMLQGNGKVFGAIGIALAMYSTTPKEN RKKVAALLIPATLTAVVVGITEPLEFTFLFIAPFLFVIHALLAATMDTIMYGFGVVGNMG GGLLDFIATNWIPLGQNHWMTYVAQVIIGLIFSAIYFFVFRYLILKFDIPLPGRRAEEEV KLFSKKDYKEKKGEDSTDTSGFKPSNEYEEKAYYYLEGLGGKENIKDVTNCTTRLRLTVN DESKVEDTAYFTHQQMAHGLVKSGKNVQVVVGMTVPQVREAFEHLVFDEDENDKK >gi|312979656|gb|ACRM01000009.1| GENE 187 196157 - 196687 482 176 aa, chain - ## HITS:1 COG:no KEGG:SH0733 NR:ns ## KEGG: SH0733 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 176 1 176 176 252 73.0 3e-66 MWIDKFETYILNIVGLQSRSTKRQLMKICRNVQFCESFQYNIIKYNNTPALEISLPKQQL PYFISFLSFYQISIYQILSSRNTHILLDSGQHYSSSKRFNLCIDGLQDAFIKDKVIDIMT YFSNQYDLTYTLNNNYASVCCKPEIFSKLIQFIACRNIDILSATYKTRALHNARIS >gi|312979656|gb|ACRM01000009.1| GENE 188 196973 - 197887 895 304 aa, chain + ## HITS:1 COG:SA2112 KEGG:ns NR:ns ## COG: SA2112 COG0385 # Protein_GI_number: 15927901 # Func_class: R General function prediction only # Function: Predicted Na+-dependent transporter # Organism: Staphylococcus aureus N315 # 1 304 1 304 305 397 75.0 1e-110 MLSKVSEFATKTFLLWMFIAAIIGFIFPTQLATIGQFVPWLLGIVMLGMGMTIKPSDFKL VFKEPRSVIIGVILQFTIMPILAYTIAKIFHLPAELAIGVILVGCCPGGTSSNVMSYLAN ANVALSVAITSVSTLLAPFVTPALIYLFAHEWLHVSFLSMLWSVIQVVLLPIIIGFILQL VSKKVTREATKILPIISVVAISLILAAVVGGSKSQILKTGLLIFIVVILHNAVGYLLGYV LAHVFKLDRRDKKAVSIEVGMQNSGLAVSLATVHFNPLAAVPGAVFSFVHNISGPILAKY WSKR >gi|312979656|gb|ACRM01000009.1| GENE 189 197937 - 198581 738 214 aa, chain + ## HITS:1 COG:SA2111 KEGG:ns NR:ns ## COG: SA2111 COG0637 # Protein_GI_number: 15927900 # Func_class: R General function prediction only # Function: Predicted phosphatase/phosphohexomutase # Organism: Staphylococcus aureus N315 # 1 211 1 211 211 294 67.0 8e-80 MYKAIVFDFDGTIVDTEQHLFNIINKHLISHNATPITLDFYRENIGGEAKDLHEYLEQTI GNDNKETIYKEHHQTSNQLEINPTIKQLMKYLKQRHIPMAIATSSYKKDIFPVFKSLGLD EYINIIVGRESVEYVKPEPELYLTAVQQLNYSPTHCLAIEDSVNGATAAFRAGLDVIVNT NYMTQTQDFSTIPYIGKDLNNEEIINRFFEKGHV >gi|312979656|gb|ACRM01000009.1| GENE 190 198587 - 198778 180 63 aa, chain + ## HITS:1 COG:no KEGG:SH0735 NR:ns ## KEGG: SH0735 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 63 1 63 63 71 73.0 1e-11 MSWQLIIFFLAGPIIIGIGNLVLGPIFNKRIPFRVRIRSFMLGSMIYLILAFIAYFFLLQ GKL >gi|312979656|gb|ACRM01000009.1| GENE 191 198834 - 199022 273 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSVTIGIILIIVLLFLSLIPNYNAMKQAKSQGSKSTRFTVMVGIDAILIVLLVFTIILKI II >gi|312979656|gb|ACRM01000009.1| GENE 192 199029 - 199373 347 114 aa, chain - ## HITS:1 COG:no KEGG:SH0738 NR:ns ## KEGG: SH0738 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 113 1 113 116 98 61.0 5e-20 MQHLLKKDIKISIIFAIVFFLLNFFSEQQHMVSSLILRTFLATLAFFLLYLIVFSIFNSD QRKIKFSITLSIAVIIFLIIGIVLSSPKFGVLIGICVGIIAGFIWEWIEKRKGE >gi|312979656|gb|ACRM01000009.1| GENE 193 199702 - 201090 1945 462 aa, chain + ## HITS:1 COG:SA2109 KEGG:ns NR:ns ## COG: SA2109 COG1113 # Protein_GI_number: 15927896 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 1 455 1 455 459 660 82.0 0 MDNNELHRGLSARQIRMIALGGTIGVGLFMGATSTIKWTGPSVIFAYLIAGIFLFLIMRA MGELIYLNPTTGSFATFASEYIHPAAGYMTAWSNIFQWIVVGMSEVIAVGEYMNYWFPHL PQWIPGVIAIVLLLVANLASVKAFGEFEFWFAMIKVVTILLMIIAGLGLIFFGIGNGGHP IGISNLWKHGGFMPNGLVGFFFALSIVIGSYQGVELIGITAGETKNPKENIKSAVNGVIW RILIFYIGAIFVIVSIYPWNQLESIGSPFVATFSKIGITFAAGLINFVVLTAALSGCNSG IFSASRMIYTLAQKGQMPKIFTRVMKNGVPFYPVLTIAIGILIGALLNVILPVFIKGADS IFVYVYSASILPGMIPWFMILISHIRFRKLHPEQIENHPFKMPGGPISSVITIIFLLIVL IGMLFNKDTVISVVIGIIVLAGVTVYYFIRGHHKNDAIKRVK Prediction of potential genes in microbial genomes Time: Sun May 29 09:17:14 2011 Seq name: gi|312979655|gb|ACRM01000010.1| Staphylococcus hominis subsp. hominis C80 cont1.10, whole genome shotgun sequence Length of sequence - 101508 bp Number of predicted genes - 121, with homology - 119 Number of transcription units - 47, operones - 29 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 117 - 159 4.1 1 1 Op 1 . - CDS 167 - 1039 841 ## COG1737 Transcriptional regulators 2 1 Op 2 . - CDS 1048 - 1236 132 ## - Prom 1300 - 1359 9.4 3 2 Op 1 . - CDS 1364 - 1717 213 ## gi|228474737|ref|ZP_04059468.1| conserved hypothetical protein - Prom 1741 - 1800 2.6 4 2 Op 2 . - CDS 1830 - 2525 632 ## COG2378 Predicted transcriptional regulator - Prom 2601 - 2660 11.5 + Prom 2812 - 2871 7.4 5 3 Op 1 . + CDS 2894 - 3673 827 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family + Prom 3708 - 3767 9.6 6 3 Op 2 . + CDS 3789 - 4736 1203 ## COG1316 Transcriptional regulator + Term 4754 - 4805 9.7 + Prom 4773 - 4832 6.4 7 4 Op 1 6/0.053 + CDS 4991 - 7942 3172 ## COG3383 Uncharacterized anaerobic dehydrogenase 8 4 Op 2 . + CDS 7944 - 8411 550 ## COG2427 Uncharacterized conserved protein + Term 8427 - 8476 8.4 + Prom 8459 - 8518 8.9 9 5 Op 1 . + CDS 8577 - 8798 227 ## gi|228474763|ref|ZP_04059494.1| conserved hypothetical protein 10 5 Op 2 1/0.579 + CDS 8822 - 9613 929 ## COG4193 Beta- N-acetylglucosaminidase 11 5 Op 3 . + CDS 9634 - 10758 1223 ## COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases + Term 10759 - 10812 17.1 - Term 10740 - 10805 18.3 12 6 Op 1 . - CDS 10818 - 11777 1328 ## COG1052 Lactate dehydrogenase and related dehydrogenases 13 6 Op 2 12/0.000 - CDS 11857 - 12171 473 ## COG2076 Membrane transporters of cations and cationic drugs 14 6 Op 3 . - CDS 12173 - 12502 394 ## COG2076 Membrane transporters of cations and cationic drugs - Prom 12639 - 12698 8.3 - Term 12578 - 12624 7.1 15 7 Tu 1 . - CDS 12707 - 13657 1180 ## COG3942 Surface antigen - Prom 13689 - 13748 6.0 + Prom 13902 - 13961 10.1 16 8 Op 1 . + CDS 14177 - 15247 1315 ## SH0757 hypothetical protein 17 8 Op 2 . + CDS 15304 - 16689 1423 ## COG1757 Na+/H+ antiporter + Term 16890 - 16941 4.0 - Term 16934 - 16987 12.8 18 9 Tu 1 . - CDS 17001 - 17777 868 ## COG3942 Surface antigen - Prom 17981 - 18040 9.7 + Prom 18146 - 18205 10.1 19 10 Op 1 3/0.105 + CDS 18396 - 19250 911 ## COG2207 AraC-type DNA-binding domain-containing proteins + Prom 19263 - 19322 6.7 20 10 Op 2 1/0.579 + CDS 19428 - 20156 307 ## COG1846 Transcriptional regulators + Term 20170 - 20225 12.3 + Prom 20269 - 20328 17.3 21 11 Op 1 . + CDS 20430 - 20774 471 ## COG1846 Transcriptional regulators + Term 20793 - 20832 7.1 + Prom 20830 - 20889 7.0 22 11 Op 2 . + CDS 20920 - 22065 1356 ## COG1960 Acyl-CoA dehydrogenases + Term 22100 - 22142 8.0 + Prom 22069 - 22128 9.5 23 12 Op 1 1/0.579 + CDS 22158 - 23099 948 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase 24 12 Op 2 1/0.579 + CDS 23174 - 23719 180 ## PROTEIN SUPPORTED gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 25 12 Op 3 . + CDS 23755 - 24519 478 ## COG0456 Acetyltransferases + Term 24530 - 24582 -0.8 26 13 Tu 1 . - CDS 24558 - 25352 946 ## COG1526 Uncharacterized protein required for formate dehydrogenase activity - Prom 25420 - 25479 7.6 + Prom 25426 - 25485 9.3 27 14 Op 1 23/0.000 + CDS 25506 - 26297 1163 ## COG0725 ABC-type molybdate transport system, periplasmic component 28 14 Op 2 13/0.000 + CDS 26309 - 26980 720 ## COG4149 ABC-type molybdate transport system, permease component 29 14 Op 3 1/0.579 + CDS 26981 - 27586 235 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 27590 - 27649 15.3 + Prom 27599 - 27658 7.2 30 15 Op 1 2/0.105 + CDS 27688 - 28692 890 ## COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 31 15 Op 2 . + CDS 28706 - 29212 692 ## COG0521 Molybdopterin biosynthesis enzymes - Term 29205 - 29270 2.2 32 16 Tu 1 . - CDS 29300 - 29794 645 ## COG0315 Molybdenum cofactor biosynthesis enzyme - Prom 29959 - 30018 7.5 + Prom 29797 - 29856 10.3 33 17 Op 1 4/0.105 + CDS 29936 - 31195 1504 ## COG0303 Molybdopterin biosynthesis enzyme 34 17 Op 2 4/0.105 + CDS 31192 - 31665 656 ## COG1763 Molybdopterin-guanine dinucleotide biosynthesis protein 35 17 Op 3 21/0.000 + CDS 31670 - 32119 775 ## COG0314 Molybdopterin converting factor, large subunit 36 17 Op 4 2/0.105 + CDS 32120 - 32353 311 ## COG1977 Molybdopterin converting factor, small subunit 37 17 Op 5 5/0.053 + CDS 32356 - 32961 624 ## COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A 38 17 Op 6 1/0.579 + CDS 32976 - 33998 922 ## COG2896 Molybdenum cofactor biosynthesis enzyme + Term 34003 - 34061 7.2 + Prom 34112 - 34171 15.2 39 18 Tu 1 . + CDS 34231 - 34581 428 ## COG1846 Transcriptional regulators + Term 34593 - 34646 6.2 - Term 34580 - 34632 2.2 40 19 Op 1 18/0.000 - CDS 34656 - 35861 1267 ## COG0477 Permeases of the major facilitator superfamily 41 19 Op 2 . - CDS 35848 - 36291 625 ## COG1846 Transcriptional regulators - Prom 36342 - 36401 9.6 + Prom 36262 - 36321 7.2 42 20 Tu 1 . + CDS 36462 - 37232 614 ## SH0788 hypothetical protein + Term 37397 - 37439 -0.2 43 21 Tu 1 . - CDS 37225 - 37479 270 ## gi|228474681|ref|ZP_04059412.1| conserved hypothetical protein - Prom 37514 - 37573 10.4 + Prom 37558 - 37617 6.9 44 22 Op 1 1/0.579 + CDS 37647 - 38909 1721 ## COG2348 Uncharacterized protein involved in methicillin resistance + Term 38942 - 38983 5.2 + Prom 38934 - 38993 2.6 45 22 Op 2 . + CDS 39016 - 42189 3258 ## COG0841 Cation/multidrug efflux pump + Term 42208 - 42268 13.2 - Term 42195 - 42256 15.2 46 23 Op 1 . - CDS 42257 - 42574 251 ## SH0792 hypothetical protein 47 23 Op 2 . - CDS 42647 - 42814 285 ## - Prom 42844 - 42903 7.0 + Prom 42725 - 42784 5.9 48 24 Tu 1 . + CDS 42947 - 43855 1061 ## COG0679 Predicted permeases + Term 43880 - 43918 4.1 - Term 43858 - 43912 9.7 49 25 Op 1 1/0.579 - CDS 43926 - 44717 1263 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 50 25 Op 2 . - CDS 44739 - 45602 1408 ## COG4975 Putative glucose uptake permease - Prom 45723 - 45782 9.2 + Prom 45664 - 45723 13.4 51 26 Op 1 . + CDS 45889 - 48024 1985 ## COG0550 Topoisomerase IA + Term 48026 - 48084 3.1 + Prom 48051 - 48110 6.0 52 26 Op 2 . + CDS 48137 - 49471 1545 ## COG2252 Permeases + Term 49473 - 49536 7.2 - Term 49461 - 49519 15.2 53 27 Tu 1 . - CDS 49529 - 49918 484 ## SERP1834 hypothetical protein - Prom 50010 - 50069 6.0 54 28 Op 1 40/0.000 + CDS 50302 - 50610 512 ## PROTEIN SUPPORTED gi|15927831|ref|NP_375364.1| 30S ribosomal protein S10 55 28 Op 2 58/0.000 + CDS 50638 - 51300 1135 ## PROTEIN SUPPORTED gi|228474733|ref|ZP_04059464.1| 50S ribosomal protein L3 56 28 Op 3 61/0.000 + CDS 51328 - 51951 1040 ## PROTEIN SUPPORTED gi|228474532|ref|ZP_04059263.1| ribosomal protein L4/L1 family protein 57 28 Op 4 61/0.000 + CDS 51951 - 52226 455 ## PROTEIN SUPPORTED gi|228474611|ref|ZP_04059342.1| ribosomal protein L23 58 28 Op 5 60/0.000 + CDS 52263 - 53096 1439 ## PROTEIN SUPPORTED gi|228474682|ref|ZP_04059413.1| ribosomal protein L2 59 28 Op 6 59/0.000 + CDS 53161 - 53439 489 ## PROTEIN SUPPORTED gi|228474553|ref|ZP_04059284.1| ribosomal protein S19 60 28 Op 7 61/0.000 + CDS 53470 - 53823 569 ## PROTEIN SUPPORTED gi|27468737|ref|NP_765374.1| 50S ribosomal protein L22 61 28 Op 8 50/0.000 + CDS 53847 - 54500 1099 ## PROTEIN SUPPORTED gi|228474735|ref|ZP_04059466.1| ribosomal protein S3 62 28 Op 9 50/0.000 + CDS 54503 - 54937 747 ## PROTEIN SUPPORTED gi|228474581|ref|ZP_04059312.1| ribosomal protein L16 63 28 Op 10 50/0.000 + CDS 54915 - 55136 342 ## PROTEIN SUPPORTED gi|21283890|ref|NP_646978.1| 50S ribosomal protein L29 64 28 Op 11 50/0.000 + CDS 55163 - 55426 430 ## PROTEIN SUPPORTED gi|228474652|ref|ZP_04059383.1| 30S ribosomal protein S17 65 28 Op 12 57/0.000 + CDS 55458 - 55826 612 ## PROTEIN SUPPORTED gi|223042484|ref|ZP_03612533.1| ribosomal protein L14 66 28 Op 13 48/0.000 + CDS 55862 - 56179 536 ## PROTEIN SUPPORTED gi|228474668|ref|ZP_04059399.1| ribosomal protein L24 67 28 Op 14 50/0.000 + CDS 56187 - 56744 910 ## PROTEIN SUPPORTED gi|242243959|ref|ZP_04798402.1| 50S ribosomal protein L5 68 28 Op 15 50/0.000 + CDS 56767 - 56952 327 ## PROTEIN SUPPORTED gi|15925227|ref|NP_372761.1| 30S ribosomal protein S14 69 28 Op 16 55/0.000 + CDS 56984 - 57382 663 ## PROTEIN SUPPORTED gi|228474724|ref|ZP_04059455.1| ribosomal protein S8 70 28 Op 17 46/0.000 + CDS 57407 - 57943 905 ## PROTEIN SUPPORTED gi|228474790|ref|ZP_04059521.1| ribosomal protein L6 71 28 Op 18 56/0.000 + CDS 57975 - 58337 594 ## PROTEIN SUPPORTED gi|228474575|ref|ZP_04059306.1| ribosomal protein L18 72 28 Op 19 50/0.000 + CDS 58358 - 58858 825 ## PROTEIN SUPPORTED gi|228474613|ref|ZP_04059344.1| ribosomal protein S5 73 28 Op 20 48/0.000 + CDS 58875 - 59054 286 ## PROTEIN SUPPORTED gi|228474712|ref|ZP_04059443.1| ribosomal protein L30 74 28 Op 21 53/0.000 + CDS 59074 - 59514 736 ## PROTEIN SUPPORTED gi|228474744|ref|ZP_04059475.1| ribosomal protein L15 75 28 Op 22 28/0.000 + CDS 59514 - 60806 736 ## PROTEIN SUPPORTED gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 76 28 Op 23 6/0.053 + CDS 60825 - 61475 903 ## COG0563 Adenylate kinase and related kinases + Term 61614 - 61656 0.7 + Prom 61533 - 61592 7.2 77 29 Op 1 . + CDS 61675 - 61893 306 ## PROTEIN SUPPORTED gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 78 29 Op 2 . + CDS 61925 - 62038 201 ## PROTEIN SUPPORTED gi|27468718|ref|NP_765355.1| 50S ribosomal protein L36 79 29 Op 3 48/0.000 + CDS 62061 - 62426 604 ## PROTEIN SUPPORTED gi|228474843|ref|ZP_04059574.1| 30S ribosomal protein S13 80 29 Op 4 32/0.000 + CDS 62450 - 62839 653 ## PROTEIN SUPPORTED gi|15925215|ref|NP_372749.1| 30S ribosomal protein S11 + Prom 62841 - 62900 4.9 81 29 Op 5 50/0.000 + CDS 62922 - 63866 1278 ## COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit 82 29 Op 6 6/0.053 + CDS 63888 - 64259 591 ## PROTEIN SUPPORTED gi|228474700|ref|ZP_04059431.1| ribosomal protein L17 + Term 64407 - 64468 0.4 + Prom 64264 - 64323 6.0 83 30 Op 1 15/0.000 + CDS 64561 - 65373 405 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 84 30 Op 2 34/0.000 + CDS 65370 - 66233 346 ## PROTEIN SUPPORTED gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P 85 30 Op 3 8/0.000 + CDS 66223 - 67029 831 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters 86 30 Op 4 7/0.053 + CDS 67034 - 67837 1063 ## COG0101 Pseudouridylate synthase + Prom 67911 - 67970 4.6 87 31 Op 1 59/0.000 + CDS 68088 - 68525 745 ## PROTEIN SUPPORTED gi|228474824|ref|ZP_04059555.1| ribosomal protein L13 88 31 Op 2 . + CDS 68545 - 68937 664 ## PROTEIN SUPPORTED gi|228474549|ref|ZP_04059280.1| ribosomal protein S9 + Term 69022 - 69057 6.0 - Term 69109 - 69144 -1.0 89 32 Tu 1 . - CDS 69157 - 69888 800 ## COG0846 NAD-dependent protein deacetylases, SIR2 family - Prom 70039 - 70098 4.5 + Prom 69857 - 69916 8.6 90 33 Tu 1 . + CDS 70094 - 70849 682 ## COG1349 Transcriptional regulators of sugar metabolism + Term 70856 - 70903 12.2 + Prom 70955 - 71014 8.0 91 34 Op 1 4/0.105 + CDS 71081 - 71509 706 ## COG0698 Ribose 5-phosphate isomerase RpiB 92 34 Op 2 3/0.105 + CDS 71525 - 72040 741 ## COG0698 Ribose 5-phosphate isomerase RpiB 93 34 Op 3 3/0.105 + CDS 72053 - 72985 1097 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 94 34 Op 4 2/0.105 + CDS 72989 - 73966 1253 ## COG3684 Tagatose-1,6-bisphosphate aldolase 95 34 Op 5 13/0.000 + CDS 73986 - 74300 539 ## COG1447 Phosphotransferase system cellobiose-specific component IIA 96 34 Op 6 . + CDS 74306 - 75925 1780 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 97 34 Op 7 8/0.000 + CDS 75879 - 76058 235 ## COG1455 Phosphotransferase system cellobiose-specific component IIC 98 34 Op 8 1/0.579 + CDS 76077 - 77486 1922 ## COG2723 Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase + Term 77499 - 77542 8.6 + Prom 77503 - 77562 5.4 99 35 Tu 1 . + CDS 77591 - 77782 171 ## COG4814 Uncharacterized protein with an alpha/beta hydrolase fold - Term 77862 - 77901 2.6 100 36 Tu 1 . - CDS 78061 - 79062 1233 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 79278 - 79337 8.1 + Prom 79039 - 79098 6.7 101 37 Op 1 1/0.579 + CDS 79202 - 80209 1275 ## COG2130 Putative NADP-dependent oxidoreductases 102 37 Op 2 1/0.579 + CDS 80242 - 81255 1202 ## COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases + Term 81270 - 81315 9.2 + Prom 81271 - 81330 12.3 103 38 Tu 1 . + CDS 81419 - 83008 1652 ## COG1292 Choline-glycine betaine transporter + Prom 83068 - 83127 9.3 104 39 Op 1 . + CDS 83160 - 83696 623 ## SLGD_00835 hypothetical protein 105 39 Op 2 4/0.105 + CDS 83709 - 83945 389 ## COG5547 Small integral membrane protein 106 39 Op 3 . + CDS 84024 - 84572 827 ## COG1302 Uncharacterized protein conserved in bacteria + Term 84579 - 84629 9.7 - Term 84627 - 84673 12.1 107 40 Tu 1 . - CDS 84683 - 86626 2117 ## COG4264 Siderophore synthetase component - Prom 86775 - 86834 11.2 + Prom 86731 - 86790 13.5 108 41 Op 1 1/0.579 + CDS 86840 - 88597 1397 ## COG4264 Siderophore synthetase component 109 41 Op 2 1/0.579 + CDS 88598 - 89659 900 ## COG3457 Predicted amino acid racemase + Term 89671 - 89713 6.4 + Prom 89763 - 89822 14.6 110 42 Op 1 . + CDS 89852 - 90334 491 ## COG4594 ABC-type Fe3+-citrate transport system, periplasmic component + Prom 90379 - 90438 2.2 111 42 Op 2 3/0.105 + CDS 90496 - 90840 443 ## COG4594 ABC-type Fe3+-citrate transport system, periplasmic component 112 42 Op 3 20/0.000 + CDS 90853 - 91884 836 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component 113 42 Op 4 1/0.579 + CDS 91881 - 92846 913 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component + Term 92850 - 92915 14.6 + Prom 92940 - 92999 8.4 114 43 Tu 1 . + CDS 93135 - 94451 1410 ## COG3314 Uncharacterized protein conserved in bacteria + Term 94559 - 94605 7.1 115 44 Tu 1 . - CDS 94511 - 94825 458 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides - Prom 94849 - 94908 10.0 + Prom 94836 - 94895 9.0 116 45 Tu 1 . + CDS 95002 - 95520 383 ## COG1988 Predicted membrane-bound metal-dependent hydrolases + Term 95524 - 95565 -0.8 + Prom 95524 - 95583 7.9 117 46 Op 1 1/0.579 + CDS 95626 - 96813 1300 ## COG4284 UDP-glucose pyrophosphorylase 118 46 Op 2 1/0.579 + CDS 96830 - 97513 697 ## COG1272 Predicted membrane protein, hemolysin III homolog + Prom 97600 - 97659 5.9 119 47 Op 1 . + CDS 97701 - 99041 1115 ## COG0477 Permeases of the major facilitator superfamily 120 47 Op 2 . + CDS 99119 - 99586 391 ## SH0873 hypothetical protein + Prom 99592 - 99651 4.8 121 47 Op 3 . + CDS 99678 - 100742 1391 ## COG0489 ATPases involved in chromosome partitioning + Term 100764 - 100804 4.1 + SSU_RRNA 101200 - 101508 100.0 # EU373358 [D:1..1518] # 16S ribosomal RNA # Staphylococcus sp. HNL18 # Bacteria; Firmicutes; Bacillales; Staphylococcus. Predicted protein(s) >gi|312979655|gb|ACRM01000010.1| GENE 1 167 - 1039 841 290 aa, chain - ## HITS:1 COG:SA2108 KEGG:ns NR:ns ## COG: SA2108 COG1737 # Protein_GI_number: 15927895 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 290 1 290 290 284 50.0 2e-76 MTNILSRIDEVYASSSKSEQKLSRFILNSPHKLVSMSNEAIADELNISISTMNRYSQKLI NQNFKAIRDEIKQWFPKQVTPYNIKLVENESVESLKQKLYFQTKTSLKQSNHFIDHQTID AICETFKQAHTIFLYGYGSSYVCALEFYQKLSRIGLNIQLVQDTHLLTTMLSTHNKNDCV VFITNSGEQSELQAMVKVVKDFNLSMITITSSNNNSIAKDSDLVLTYNEDYKNELCMSAT TALFAQLYTIDIIFYRFIARNYHDSLDYITQSKISLDNYHKYLSKIEFKH >gi|312979655|gb|ACRM01000010.1| GENE 2 1048 - 1236 132 62 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGEYHIISVILLRKPLLNLITLQLFIDICGNLDVIYDVFTCLDRDVFIFIYLFMMKEKLL IN >gi|312979655|gb|ACRM01000010.1| GENE 3 1364 - 1717 213 117 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474737|ref|ZP_04059468.1| ## NR: gi|228474737|ref|ZP_04059468.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 117 1 117 117 166 100.0 4e-40 MHYKTLIYDQHILIQLLILLEKAKYYYFMDIAHLSLGIKDYNNFITHCRAHFKHNQINSI SSHCSDSQMYCFEQYNKLVTHLKQIPLQNFKNGNLIVDLQERQNHIYKVYNQINNYQ >gi|312979655|gb|ACRM01000010.1| GENE 4 1830 - 2525 632 231 aa, chain - ## HITS:1 COG:SA2105 KEGG:ns NR:ns ## COG: SA2105 COG2378 # Protein_GI_number: 15927892 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 225 1 225 230 237 56.0 1e-62 MNKMERQNQMMSLIQQGHKINASDLAKQFNVSTRTITRDINDLESKGVHIYAHKGRHGGY EIQNTDHYFQLKLNESELIALFLTLQESQSHSTLPYTQDIRSIMNKCLKTPNTQMLKILK HISNNIKLEDTRSLTLPHLFSEILIYSNERHVMLVDFSENNEITAENVIFIGLLCRNGQW FAIVYEIGFGRTRELSILNIVDISYSFEKKIQTYDITIHNYKEFLQTKNNE >gi|312979655|gb|ACRM01000010.1| GENE 5 2894 - 3673 827 259 aa, chain + ## HITS:1 COG:SA2104 KEGG:ns NR:ns ## COG: SA2104 COG0483 # Protein_GI_number: 15927891 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Staphylococcus aureus N315 # 1 256 1 256 265 324 62.0 1e-88 MQNQQLQFIDKHITNWFQHLDEIIPNLIKNMVTETKENRFDLVTNVDKQIQNDFEAYLEK YFPTHQLLAEEKNNDGIEPYQGHLWIMDPIDGTANLVKQQEDYCIILAYFENGQPKLSYI YDYAHKIIYKAIEGKGAFMNNVKLESPEVLSLKDTIVSFGSEYVSENLSKALYQSSFSVR YIGACGLDSVRVIKGQFGAHFNTNPKPWDIAAQFLFAKELGLVMTQMDGQHLDFAKGGPF IISNKGCYEEILAIINDEH >gi|312979655|gb|ACRM01000010.1| GENE 6 3789 - 4736 1203 315 aa, chain + ## HITS:1 COG:SA2103 KEGG:ns NR:ns ## COG: SA2103 COG1316 # Protein_GI_number: 15927890 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 314 1 315 315 423 71.0 1e-118 MQRPDKKKHSSSKIMKWVISILVVLAIVAVAVIAATILITGNKIHNPLHRQQSELRSHNV NLRNGDPFTIALFGVDSNAQRKSTNDGERSDTIMILSVNPKKKTTELVSIPRDTQAEIVG RGTTEKINHAYAYGGPTMAVKSLEKLMNVPIDHYATIDMDGLHDMIDSVGGVNITSNDTF TVQGTTFTKGQSTHVDGDTAMAFIRSRKETGAGGDFGRQERQQLVLQAMANKMVSSSAIT HLPSLITQIQKNVTTDLTLGDLNEIRSHYKEANDTVNRHQLEGTGSIQNDGLWYFIPNES SKGQMTEVLNNNLKK >gi|312979655|gb|ACRM01000010.1| GENE 7 4991 - 7942 3172 983 aa, chain + ## HITS:1 COG:SA2102 KEGG:ns NR:ns ## COG: SA2102 COG3383 # Protein_GI_number: 15927889 # Func_class: R General function prediction only # Function: Uncharacterized anaerobic dehydrogenase # Organism: Staphylococcus aureus N315 # 1 983 1 983 984 1797 84.0 0 MQEHLVLTLDDVDYLVEPGTNLLEFIKSRDTFVPSICYNESMGPIQTCDTCMVEIDGKVE RACSTVVDRPMSVNTQNKRVKASQKEALDRILEKHMLYCTVCDYNNGDCEIHNAMDAWGL QEQSYEYKTKPYEKDYGPFYRYDPDQCILCGRCVEACQDVEVNETLSIDWDREHPRVIWD NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGYLTDTEPGSLAAMIDLTKKAEPGDG LLFAVSDSEAEMRKERIKKTKTVCTYCGVGCSFDVWTKDREILKVQPSHDSPANKISTCV KGKFSWGHINSDQRLTKPLVRKNGEFHEVEWEEALDVIEKNFKRIKNKYGGDHLAFIASS KGTNEESYLMQKLSRQVFGSNNIDNCSRYCQAPATKGLFRTVGHGGDSGSIDDLEKAAMT VLIGTNTAEAHPVIASRIKRAQKLFGQRMHVFDIRKHEMAERADEFYQPKPGTDLVWLSA VTKYIIDHHLHDIEFIKKWVDNFDEYYESLTPFSLEFTEEVTGISKARLISFAEECAKAE SVAICWAMGVTQQDIGSDTSTAISNLLLVTGNYRRPGTGAYPLRGHNNVQGASDMGSMPD QFPGYQMIHNDEIRAKFEKEYGVTLNPTPGRDNHQMMDGIHEGQIHSLYLYGEDTGIVDS NINYVQSALEKVEFLVVQDEFLTFTATYADVVLPASPSLEKDGTYTNTERRIQRINQALS PLGDSKPDWVIFQLIAKRMGFDWNYSHPSEIMDEIARLTPSYSGVSYERLEGFNSLQWPV APDGIDQPTLYLDGFNFDNKRAKLFKLTFDNFFKEDEVYDLHVNNGRVLEHFHEGNMTYQ TEMIKYKMPHAFVEISPELAKDRDIHEGAEVKLISDTGEATLVATITDRVKGKEIYIPLN NDAMSNGDIGAINKLTNSDADYATHTPSYKRTHCRLEIITRKGKSPLNPTNFRVDKHRHP QYSVQVQKKWKRKDYIFPGNVVD >gi|312979655|gb|ACRM01000010.1| GENE 8 7944 - 8411 550 155 aa, chain + ## HITS:1 COG:SA2101 KEGG:ns NR:ns ## COG: SA2101 COG2427 # Protein_GI_number: 15927888 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 155 1 156 157 200 78.0 6e-52 MAERITKINRLEKSKEQLKLESLNEVTDAIVENKDSILKAIRIIKNLDDAKLLDAINGGI KGRQVIINKFATELNKDMYTGLITNLAPMVFMLGNLEVKELSQFLNKLNSGLHVANQASP NAKMTIRSLMSVLKDDDMNRSLTYMLNLLKGMSRK >gi|312979655|gb|ACRM01000010.1| GENE 9 8577 - 8798 227 73 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474763|ref|ZP_04059494.1| ## NR: gi|228474763|ref|ZP_04059494.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 73 1 73 73 65 100.0 1e-09 MTIISNIFVILGIIFLIMMKLMLAIAMFAVSLAISLVIFNVLFRDRTGMKIIINISFAIV VIAIIVAYSMLSK >gi|312979655|gb|ACRM01000010.1| GENE 10 8822 - 9613 929 263 aa, chain + ## HITS:1 COG:SA2100 KEGG:ns NR:ns ## COG: SA2100 COG4193 # Protein_GI_number: 15927887 # Func_class: G Carbohydrate transport and metabolism # Function: Beta- N-acetylglucosaminidase # Organism: Staphylococcus aureus N315 # 9 259 7 257 258 290 56.0 2e-78 MKYRNSNHLRLSIILFMFVLIILIVLLCINHKDILRNDRRYSFQEAFQKQTQSNQLNTID KNNQFVLANNNEVKRAMSISKKDNDLKYMDLSKTVPMNEDEVKHILKNKGILTDQAQTFL KAQDKYQVNIIYLMNHAIIETANGQSELANGIKENNHKYYNFFGIGAFDQDAIATGHSYA KEHDWTTPSKAIMGGAAFIRHQYFENEQITLYQMRWNPKNPGSHQYASDIEWADKIADNM KKDYERLGIKKDKIRRNYYISNK >gi|312979655|gb|ACRM01000010.1| GENE 11 9634 - 10758 1223 374 aa, chain + ## HITS:1 COG:SA2099 KEGG:ns NR:ns ## COG: SA2099 COG0654 # Protein_GI_number: 15927886 # Func_class: H Coenzyme transport and metabolism; C Energy production and conversion # Function: 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 13 374 13 374 374 515 68.0 1e-146 MKVAVIGAGIGGLTVAALLQEQGHDVKVFERKTDIKEVGAGIGIGDNVLKKLGNHDLAKG IKNAGQNLKSLNIYSDKGDLLTSAKLKEGTLNVTLSRQSLIELIYSYVKPNTVFTDYEVT KVDVQSELPMLHFSKHASQTFDLCIGADGIHSAVRKALFPDSKVIYQGYTCFRGMIDEVD IMNQYTADEYWGRRGRVGIVPLINNQAYWFITINANEKDPKYVSFEKPHLQAYFNHYPNQ VRALLDKQSETGIIKNDLYDLKPLTSFVHHRTVLLGDAAHAMTPNMGQGAGQAMEDAIVL ANCIASYDLKKALQRYNKLRVKHTKKVIKRSRKIGHIAQKDNKLVVALRNSIMKHMPKRF FSGQTKFLYKTKDK >gi|312979655|gb|ACRM01000010.1| GENE 12 10818 - 11777 1328 319 aa, chain - ## HITS:1 COG:SA2098 KEGG:ns NR:ns ## COG: SA2098 COG1052 # Protein_GI_number: 15927885 # Func_class: C Energy production and conversion; H Coenzyme transport and metabolism; R General function prediction only # Function: Lactate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 317 1 317 317 481 79.0 1e-136 MEKVYIAGKIPEAGLNLLKEHFEVDMYEGEDIIDKETLKKGVKDASALISILSTNVDKEV IDSGENLKIIANYGAGFNNVDVDYAREKNIDVTNTPKASTAATAELTFGLVLAIARRIVE GDKLSRTKGFDGWAPLFFRGREVSGKTLGIIGFGEIGSAVAKRAKGFDMDILYTGPHQKK EKEREIGAKYVDLDTLLEHSDFITINAAYNPDIHHMIDSEQFKKMKSTAYLVNAGRGPIV NEQALVDALKHKDIEGAALDVYEFEPDITEGLKSLDNVVITPHIGNATFEAREMMSKIVA NDTIKKLNGEEPQFVVNKK >gi|312979655|gb|ACRM01000010.1| GENE 13 11857 - 12171 473 104 aa, chain - ## HITS:1 COG:BS_ykkD KEGG:ns NR:ns ## COG: BS_ykkD COG2076 # Protein_GI_number: 16078375 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus subtilis # 1 103 2 104 105 88 49.0 2e-18 MAWLYLLVAGCFEILGVVFLNELNRTHKKIYILLGALTFIFSFSTLKLSMQTISMGTAYA IWTGIGTAGGTIVGMIFYNESKKFIRIFCIALILISVIALKIIQ >gi|312979655|gb|ACRM01000010.1| GENE 14 12173 - 12502 394 109 aa, chain - ## HITS:1 COG:BH0686 KEGG:ns NR:ns ## COG: BH0686 COG2076 # Protein_GI_number: 15613249 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane transporters of cations and cationic drugs # Organism: Bacillus halodurans # 2 105 4 107 114 81 50.0 4e-16 MQWLKVILSGLIEVVWVTCLNYAHNTFTWLITLLFIALSFYLMLSATKQLPVGTVYAVFV GIGAAGTVIVDMLFINHVISPMKLLFIILLIIGIIGLKISTDDQSEGGL >gi|312979655|gb|ACRM01000010.1| GENE 15 12707 - 13657 1180 316 aa, chain - ## HITS:1 COG:SA2097 KEGG:ns NR:ns ## COG: SA2097 COG3942 # Protein_GI_number: 15927884 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 204 315 55 166 166 111 69.0 2e-24 MKKLITLSTLTAGIGVSAFGLNIHHADAAELTQNQATQQVNQQKQHNNSEQQQNLNHQQN QNQLQKQGYNHQQTSQSNIAHQARQINHSNLNNQRYHFGQSNYNAQNQPTQHLNQQKQNQ NVIHYNEAKSKKIVTNKQAPSHFTNTIYSNNHTNPNLHLASHTTEDVASATSTMNKLNSV SHTTSSSSSSTSNSSSVTSTSTKTTSSTKNNLYTAGQCTWYVYDKVNGAIGSTWGNANNW ANAAKAAGYTVNHHAKAGSILQTTAGSLGHVAYVESVNSDGSITISEMNYTGGAYVTDTR TISASEVSSYNYIHLS >gi|312979655|gb|ACRM01000010.1| GENE 16 14177 - 15247 1315 356 aa, chain + ## HITS:1 COG:no KEGG:SH0757 NR:ns ## KEGG: SH0757 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 356 1 356 356 631 86.0 1e-179 MKIAIVGSGNGAVTAAVDMVNQGHEVKLYCRNSSIHKFDRALEKGGFDFNNEGHETFVPF TNISDDIEYVLKDAEVIQVVIPSSYIEYYAKVMSHYITAEQIIFFNIAAAMGSIRFMNVL EERHINIQPKYAEANTLTYGTRVDFEEARVDLSLNVRKVFFSTYNKRELNECFDKVSQLY PQLVKEESLWKTNLENGNPEVHPAPTLLNVGRIDYADTFALYKEGITKHTVRLLHAVELE RLTLGRKLGFELLTAKEARIQRGYLERKDEDEPLNRLFNTSPVFSQIPGPNSVENRYLTE DIAYGLVLWSSLGREIGVDTPNIDAIITIASTILERDFFNEGLTVEELGLDKLGLK >gi|312979655|gb|ACRM01000010.1| GENE 17 15304 - 16689 1423 461 aa, chain + ## HITS:1 COG:SA2094 KEGG:ns NR:ns ## COG: SA2094 COG1757 # Protein_GI_number: 15927881 # Func_class: C Energy production and conversion # Function: Na+/H+ antiporter # Organism: Staphylococcus aureus N315 # 1 461 2 462 466 597 75.0 1e-170 MKRKPTFLEAISTIIVMVIVVTIGFVKFNIPIQVLLLIASTYAAFIAMRVGLKWKDLEEG ITHRLTTAMPAIFIILAVGIIVGSWMYAGTVPALIYYGLKFLNPSYFLISAFIISAICSL ATGTAWGSASTAGIALISIGSQLGINQGMAAGAIIAGAVFGDKMSPLSDTTNLAALVTKV NIFSHIRAMMWTTIPASIIGLIVWFFAGLNSQGNVNTKQIKELLNELASIYNINFFVWIP LIVIIICLILKISTVPSMLVSALSAILIGKFNNGFKFVDGFKATFDGFTSSMTGHSHVTE NAKTLIEQGGMMSMTQIIVTIFCGYAFAGIVEKSGCLDVMLQTVAKGVKSVGTLVLITVL SSLMLVFAAGVASIVIIMVGVLMKDMFEDMNLDRSNLSRTLEDSSTMVLPLIPWGTSGIY YAQQLGVSVDQFFIWAVPCYLCAILAIIYGFTGIGIRKKIN >gi|312979655|gb|ACRM01000010.1| GENE 18 17001 - 17777 868 258 aa, chain - ## HITS:1 COG:SA2093 KEGG:ns NR:ns ## COG: SA2093 COG3942 # Protein_GI_number: 15927879 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 1 258 1 267 267 190 67.0 2e-48 MKKIATATIATAGVAAIAIAGQGHEAHAAEQGYNPNDPTSYSYSYTIDQQGNYHYTWKGN WSPDRLNHSNYNYNYNYNTYNNYSNTNSTYSYNNYNTNNSNQVASNPTQSYTTSNQQTGG LGAASTSNNNVKVTTVTAPSSTGVSISNSVSSGRNYYTSGQCTYYVYDRVGGKIGSTWGN ANNWANAAASAGYTVNNRPSAGAIMQSTAGAYGHVAYVENVNSNGSITVSEMNYGHGVGV VTSRTLSSSEAASYNFIH >gi|312979655|gb|ACRM01000010.1| GENE 19 18396 - 19250 911 284 aa, chain + ## HITS:1 COG:SA2092 KEGG:ns NR:ns ## COG: SA2092 COG2207 # Protein_GI_number: 15927878 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 251 1 245 651 172 39.0 5e-43 MIDNFSVKLLKNTRILKQKESNIKLIYWLKGSGKINLDLDTYNMKKRDLVFIMLNDLYSI EGETNSVIAIIEISFTDYLRFADDYIRQKGYKFSSIERKQLESFIINLLEFESRKPRLPH IRDKLVKHLCVELGYIQRKHRQNYKLNNPLVDEVHEYIIEHHHEKINKQALANSLDMSNK ELSQVIKFHTPYHNIAQYINDIRLKLCLLDILDSSEFIQDIAYKHGFNHFPRFIALFSKK YGMTPGQARKKQFAPIYKATETVEISLDYEAQLLIAEAKSNYHT >gi|312979655|gb|ACRM01000010.1| GENE 20 19428 - 20156 307 242 aa, chain + ## HITS:1 COG:SA2091 KEGG:ns NR:ns ## COG: SA2091 COG1846 # Protein_GI_number: 15927877 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 238 1 238 247 74 24.0 1e-13 MTKNDMDVLLFYLLFYKAVDELLKYSKNLNIEHLNVLYAIIDYHKTNHQGMDIETLMKKT YLSKRTLFHLVSHLYHENWIFKSYDANDQRRLRILPVEVYERKMNHLLLEIGELLENNYL KTSIKNMNYCKLTYLITIYKVLNKIEKSIKHYQLSLNDLLVLGIIWSNQNDISLKSINYF SRCQSININLVIKRLQQSGYILKERDVIDERRVCIKLNMSKKEEIHYILRHCSKMIKKEL IL >gi|312979655|gb|ACRM01000010.1| GENE 21 20430 - 20774 471 114 aa, chain + ## HITS:1 COG:SA2089 KEGG:ns NR:ns ## COG: SA2089 COG1846 # Protein_GI_number: 15927875 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 114 1 114 115 115 77.0 2e-26 MGQIKDINDLVNATFQVKKFFKDTKKKYNLNYEEIYILNYIVKSKKDEITSKEIATYSEF KPYYLTKALQKLKDLQLLSKKRSIQDERTVIVYVTKEQRERINALIAELEKYIQ >gi|312979655|gb|ACRM01000010.1| GENE 22 20920 - 22065 1356 381 aa, chain + ## HITS:1 COG:SA2080 KEGG:ns NR:ns ## COG: SA2080 COG1960 # Protein_GI_number: 15927865 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA dehydrogenases # Organism: Staphylococcus aureus N315 # 1 379 4 382 384 602 74.0 1e-172 MLDSFLISSDIQRKWIKKFKTIEDTFKQRAAEEDIDSKFPFDNIKWLVEEGYSVLTLPKS YGGEGATIEDMVVLQSYLGAIDGATALSIGWHLSVVGQLYQQHMWSQTMLDQFAIEVKNG ALVNRAVSEADTGSPTRGGRPATHAIKTKDGYKLNGVKTFTSMSKALTHYIVAAFVEDIQ EVGFFLIPRETKGLEIADNWNMLGMRATESHDLVLNDVIVPFENFVETKHKPQPNGWILH IPSVYLGIAQAARDYAIEFAKTHSPNSIEGTIATLPTVQQNIGKMESLLLSARHFLWSTA RGYNQYNETLNIWNETSASKILVMNQGLEVVDLAMRIVGAKSLEMDRPLQRYYRNMRAGL HNPPMEDAAYTNIAKSILDLM >gi|312979655|gb|ACRM01000010.1| GENE 23 22158 - 23099 948 313 aa, chain + ## HITS:1 COG:SA2078 KEGG:ns NR:ns ## COG: SA2078 COG1957 # Protein_GI_number: 15927863 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Staphylococcus aureus N315 # 3 312 4 313 313 483 74.0 1e-136 MTKIYFNHDGGVDDLISLFLLLQMDNIELVGVSTIGADCYLEPSLSASCKIINRFSNLSI DVAPSYERGVNPFPKDWRMHAFFMDALPILNEEWIDKRSITSTFEAYEDIINVLNNSKEK VTLLFTGPLTDLAKAIKYDKAIVNNIEKLVWMGGTFLEKGNVEEPEHDGTAEWNAFWDPE AVKTIFDTSIKIEMVALESTNQVPLTPAIRQMWANQRQFIGVDFLGISYAAVPPLTHFVT NSTYFLWDVLTTAQIGKENLTDSIELKVDVCTKGPSQGRTYESDDGRMVRVVNHVNHDEF FNYITSLAKKVSH >gi|312979655|gb|ACRM01000010.1| GENE 24 23174 - 23719 180 181 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163764517|ref|ZP_02171573.1| ribosomal protein L32 [Bacillus selenitireducens MLS10] # 3 180 5 182 190 73 31 3e-12 MSTKNLVYTALMTAVICILGLVPGIPLPFMPVPIVLQNIGIFLAGVILGRKYGALSVIIF LLLAATGLPLLSGGRGGIGVFAGPSAGFLFLYPVVAYLIGLVRDRFKNHINFLTLFIGIL VFGVLLLDIVGTIIMGFIIHMPISKAFLLSFTFIPGDIIKAIIASLIGTTLLNHSRFKNL I >gi|312979655|gb|ACRM01000010.1| GENE 25 23755 - 24519 478 254 aa, chain + ## HITS:1 COG:SA2076 KEGG:ns NR:ns ## COG: SA2076 COG0456 # Protein_GI_number: 15927861 # Func_class: R General function prediction only # Function: Acetyltransferases # Organism: Staphylococcus aureus N315 # 1 252 1 253 256 226 46.0 4e-59 MTYITMKQIKENGKIYLEDELNIIYLTPSDPMTYHMNKWQYKTLPSINQWYSDMEKQRIL HKKQHSSHLSFTFPENQLLHSTWLEAIRNEGFQLGLLELYAIDSVTLKQFESNIQVDIEP VTSFNMEDYLSVYNEFSKPYGEAFVKESEERTREAILNQIDDVTRIVAYYLHKPVGILDV IVTDETVEIDGFGVLEDYRHKGIGTTMQSYVGHLAGSRPVILVADGDDTAKDMYIKQGYI FQSFQYQIVKEDAI >gi|312979655|gb|ACRM01000010.1| GENE 26 24558 - 25352 946 264 aa, chain - ## HITS:1 COG:SA2075 KEGG:ns NR:ns ## COG: SA2075 COG1526 # Protein_GI_number: 15927860 # Func_class: C Energy production and conversion # Function: Uncharacterized protein required for formate dehydrogenase activity # Organism: Staphylococcus aureus N315 # 1 260 1 260 265 421 79.0 1e-118 MDKDAVQNQPIIRYEDEQLIETEDSYVTEFPLTIMVNGKEFATVICSPTHLEELVIGFLA SEGAIYKKGEIKYLQIDNSKGFAHVELTKSLSDRFEYSTKRMVASCCGKSREFYFQNDAA IAKTSMSNIVLTPRQILNMMTGLQSASTLFKQTGGLHNAAISDGEAFFEHRQDIGRHNAL DKLYGFCLTHQIPVRNKVLIFSGRISSEILLKAAKIGVGVILSKSAPTTLAVTLAHDLNI TAIGFIRGNSFNIYSHPERVKGVK >gi|312979655|gb|ACRM01000010.1| GENE 27 25506 - 26297 1163 263 aa, chain + ## HITS:1 COG:SA2074 KEGG:ns NR:ns ## COG: SA2074 COG0725 # Protein_GI_number: 15927859 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 261 1 258 260 296 68.0 2e-80 MTVKRLLAVLGTFIIIMAGCSNSKDNENSKHSSKSNNSNNPKTELKVSAAASLSDVSKAL KKEFEKTHKNVNVTFNYGGSGALRQQIEKGAPTDVFMSANTKDVDMLKKHNQAHNTYKYA HNQLVLIGDKNSDQASVKDLKDNEKLAIGEVKTVPAGKYAKQYLDDQHLYSDVKDKIVYA KDVKQVLNYVEKGNAQMGFVYETDLYTNNERTDKVNEIKKADLKKPITYEAGATSDNKFA KEWMEFLKSKKAKNILKEYHFKV >gi|312979655|gb|ACRM01000010.1| GENE 28 26309 - 26980 720 223 aa, chain + ## HITS:1 COG:SA2073 KEGG:ns NR:ns ## COG: SA2073 COG4149 # Protein_GI_number: 15927858 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type molybdate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 223 1 223 223 323 78.0 2e-88 MPDLTPLWISIKVGFISTIIVSILGIFICRTLYKRKGHATQFLESLILLPIVLPPTVLGF ILIIVFSPRTFVGQFFQNILHLPVVFTMTGAVIASVIVSFPLMYQHTIQGFRSINPKMLN TARTMGASERKIFYRLILPLSKRSIIAGIMMSFARAIGEFGATLMVAGYIPNTTNTLPLE IYFLVEQGKENQAWLWVLVLVAFSITVISMLNFANRDKAQEVD >gi|312979655|gb|ACRM01000010.1| GENE 29 26981 - 27586 235 201 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 12 198 15 210 245 95 31 1e-18 MLQVKLQHQLKQTLIHINIEDTKAKIYAIQGPSGIGKTTILNIIAGLRQPDEAYINVNNQ LLVDTENHINVKIQQRQIGYLFQDYQLFPNMTVLQNITFMTKQSKHIDELIQRLNISHLM NQFPPTLSGGEAQRVALARTLSTKPNLILLDEPFSSLDDISRDEGIHLVKQIHEEWCIPI IFVTHSNYEAEVLADEMIQIK >gi|312979655|gb|ACRM01000010.1| GENE 30 27688 - 28692 890 334 aa, chain + ## HITS:1 COG:SA2071 KEGG:ns NR:ns ## COG: SA2071 COG0476 # Protein_GI_number: 15927856 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 # Organism: Staphylococcus aureus N315 # 1 334 1 334 334 491 69.0 1e-139 MTQERYSRQILFKDIGEHGQQTINQKHVLIVGMGALGTHVAEGLVRAGIRELTIVDRDYI EYSNLQRQTLFTESDADRMLPKVVAAQDHLKHIRSDIKVNIYIEHVDAQFLEQYATSVDL IIDATDNFETRQLINDFSYRYRIPWIYGGVVQSTYVETAFIPGQTPCFNCLMPQLPVINL TCDTAGVIQPAVTMTTSFQLRDALKILIGKQIPTKLTYGDIWENTHFSFGYSKMRRDDCP TCGKNASFPYLYTHSTSYATLCGRDTVQYENKDITKKVLVDFLIALDIRYHENQYMLVFE FKKHRIVYFEGGRMLIHGTTKKSEAIQLINQLFG >gi|312979655|gb|ACRM01000010.1| GENE 31 28706 - 29212 692 168 aa, chain + ## HITS:1 COG:SA2070 KEGG:ns NR:ns ## COG: SA2070 COG0521 # Protein_GI_number: 15927855 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzymes # Organism: Staphylococcus aureus N315 # 1 168 1 168 168 222 68.0 3e-58 MHEHENKEVKKTIQCAVLTISDTRNKETDKGGQLVQKCLKELNIEVTEEHYNIIKDDKED IQSQIDEWLASDIDVIITTGGTGIAQRDVTIEAVKPLLDKEIEGFGELFRYLSYTEDVGT KALLSRALAGTVMSKLIFTLPGSTGAVKLAMTKLIIPELNHMVYELNK >gi|312979655|gb|ACRM01000010.1| GENE 32 29300 - 29794 645 164 aa, chain - ## HITS:1 COG:SA2069 KEGG:ns NR:ns ## COG: SA2069 COG0315 # Protein_GI_number: 15927854 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 162 1 161 164 207 79.0 1e-53 MSNFTHINHQGNAKMVDVSNKSITKRIAKAHSSITVNEAIYHQIIDNTNKKGNVLNTAQI AGIMAAKNTSTIIPMCHPLPLTGIDIEFSWNQANTQRHYQLSITATVSTTGKTGVEMEAL TAASVTALTVYDMTKAADKGMIIGDTYLESKSGGKSGDYHRQLD >gi|312979655|gb|ACRM01000010.1| GENE 33 29936 - 31195 1504 419 aa, chain + ## HITS:1 COG:SA2068 KEGG:ns NR:ns ## COG: SA2068 COG0303 # Protein_GI_number: 15927853 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 419 1 419 419 626 76.0 1e-179 MVVEKRKPIPIKEAIERIVKQDIYTPQSNISLEDSLGYVLAEDIVATYDIPRFNKSPYDG FAIRSEDSAGAFSKNRKTFKVIDHIGAGTVSHKTVGENEAVRIMTGAQIPEGADAVVMFE QTVENGDTFTIRKPFEENENVSLKGEETKTGDIVLKKGQVINPGAIAVLATYGYTEVPVF LKPSIAVIATGSELLNVDEELQPGKIRNSNGPMIQALADKMGLTIESYSIQQDDLESSIQ VITKAMKDHDIVITTGGVSVGDYDFLPKIYKAIQAEVLFNKIAMRPGSVTTVAVANNKYL FGLSGNPSACFTGFELFVKPAVQHMMQAKAVYPQVVKATLMEDFAKANPFTRFIRATASF THNCATVVPSGFNKSGAVVAIAHSNAMIMLPGGTRGFKAGHTVDVILTESNVFEEELSL >gi|312979655|gb|ACRM01000010.1| GENE 34 31192 - 31665 656 157 aa, chain + ## HITS:1 COG:SA2067 KEGG:ns NR:ns ## COG: SA2067 COG1763 # Protein_GI_number: 15927852 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein # Organism: Staphylococcus aureus N315 # 1 153 1 153 161 158 56.0 4e-39 MILQIVGFKDSGKTTLLQQSITFLKSQGYHIVTIKHHGHDKDDITLQSSNVDHMKHFEAG ADQSIVQGSAYQQTVTRRNQPSLEELIKESVTIRYDVILVEGFKHENYDKIVVYQTQEEL EKLRLLTHVQYFYNYNNENALNNYEQWLLKWMKQKDE >gi|312979655|gb|ACRM01000010.1| GENE 35 31670 - 32119 775 149 aa, chain + ## HITS:1 COG:SA2066 KEGG:ns NR:ns ## COG: SA2066 COG0314 # Protein_GI_number: 15927851 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, large subunit # Organism: Staphylococcus aureus N315 # 1 146 1 146 148 233 82.0 1e-61 MKQFEIVTNPIEPEQYRTFTLNEHQGAVVVFTGHVREWTKGVKTEYLEYEAYVPMAQKKL EQIGEEITQRWPGTITTIVHRIGPLHISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVP IWKKEIWEDGAEWQGHQRGDHSQATKGGA >gi|312979655|gb|ACRM01000010.1| GENE 36 32120 - 32353 311 77 aa, chain + ## HITS:1 COG:SA2065 KEGG:ns NR:ns ## COG: SA2065 COG1977 # Protein_GI_number: 15927850 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin converting factor, small subunit # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 89 64.0 1e-18 MRVLYFAEIKEILEMNSEDIDLIEDITVETFKELLFERHPSIRDKKFQVAVNEEFVQLND IVKQDDIVALIPPVSGG >gi|312979655|gb|ACRM01000010.1| GENE 37 32356 - 32961 624 201 aa, chain + ## HITS:1 COG:SA2064 KEGG:ns NR:ns ## COG: SA2064 COG0746 # Protein_GI_number: 15927849 # Func_class: H Coenzyme transport and metabolism # Function: Molybdopterin-guanine dinucleotide biosynthesis protein A # Organism: Staphylococcus aureus N315 # 1 199 1 199 199 225 55.0 5e-59 MKAIILAGGHSKRFGSPKAFACIHGEMFYKRIINTLTETNLFDDIIISTNKQLKNEFEYK QIMIDEETHADKGPLSGIYTVMKHYNNEELFFVVSVDTPMITKEAISQLYQFTISQRMEH QADIIAYSDNDKPIPTIAFYSRGVISNIEKALNSNDYSLRHVYKNVITCFLDTKEVQPLK NWSKNINYQDDLNTLLHQIND >gi|312979655|gb|ACRM01000010.1| GENE 38 32976 - 33998 922 340 aa, chain + ## HITS:1 COG:SA2063 KEGG:ns NR:ns ## COG: SA2063 COG2896 # Protein_GI_number: 15927848 # Func_class: H Coenzyme transport and metabolism # Function: Molybdenum cofactor biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 340 1 340 340 585 82.0 1e-167 MTIQIKDKLGRPIRDLRISVTDRCNFRCDYCMPKEIFGDDFVFLPKEELLTFDEITTIAK VYAELGVKKLRITGGEPLLRRDLYKLIEKLNRIEGIEDIGLTTNGLLLKKHGQKLYDAGL RRINVSLDAIDDEVFQAINNRNIKASTILQQIDYAVSIGFHVKVNVVIQKGINDDQILPM IEYFKDKHIQIRFIEFMDVGNDNGWDFSKVVTKEEMLSTIEEKFDIEPLPPRYFGEVATY YRHKDNGAQFGLITSVSASFCSTCTRARLSSDGKFYGCLFSVIDGFDIKSLLRSGATHQK LKDTLISLWQARDDRYSDERTEQTVKNRQRKKINMNYIGG >gi|312979655|gb|ACRM01000010.1| GENE 39 34231 - 34581 428 116 aa, chain + ## HITS:1 COG:SA2062 KEGG:ns NR:ns ## COG: SA2062 COG1846 # Protein_GI_number: 15927847 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 116 1 116 116 156 83.0 7e-39 MNNKVNRFIEAEKELSQLKHWLKMTYKISIEEFVVLFKVYEGKKISGKELRDTLHFEMLW DTSKIDVIIRKIYKKELISKLRSETDERQVFYFFNASQQKVLDKMKNEIEAISIAN >gi|312979655|gb|ACRM01000010.1| GENE 40 34656 - 35861 1267 401 aa, chain - ## HITS:1 COG:SA2061 KEGG:ns NR:ns ## COG: SA2061 COG0477 # Protein_GI_number: 15927846 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 2 399 3 400 403 436 65.0 1e-122 MNQTSTIKQPIFTRSFTINFIINFFVYLCMYLLLVIIADYSKTSYHVSDSISGLVVGLFI IGSLIGRFGTGKYVNRFGPKKILIVGLIFLIITQLLYFISGSITILMFVRLLNGIATAIA TTATGTIAAHVTPVERKSEGISLFSLSLVLGSAIGPFFGILLLKSFSINLLFLICLILGI ASLIVSLFIKIDFNSTKNAVDRKVAQASGFNIHNFIAKEAVPVAIVMMIIGLNYASILTF LKPFAEQRHLLEASSYFFIFYAVASLITRPIAGRMIDAKNENVVVYPAFLALIITFVLLV FSYNGWVLLLAGVFLGIGYGNLSSSMQAIAIKVSPSSKYGIATSTYFIGLDIGIGFGPSL LGLFTDSITYTQVYLIMAIVAALCTVLYLIVHGRKVHGNTY >gi|312979655|gb|ACRM01000010.1| GENE 41 35848 - 36291 625 147 aa, chain - ## HITS:1 COG:SA2060 KEGG:ns NR:ns ## COG: SA2060 COG1846 # Protein_GI_number: 15927845 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 140 1 141 146 129 47.0 1e-30 MLTNEFFNSFIGIYRPYIKRTQPILDQFGLHTGQWLVLKDIATYDQTTLVQISKRRFIEK PTARKIIKVLFEKDLLLVTPGTDKREKLLSLSEKGQQLFEDMNACITPIQEDLIHQSNIS NDDLDHVIAIMKKLHTTLSKGDTHESD >gi|312979655|gb|ACRM01000010.1| GENE 42 36462 - 37232 614 256 aa, chain + ## HITS:1 COG:no KEGG:SH0788 NR:ns ## KEGG: SH0788 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 251 1 251 253 354 71.0 2e-96 MKLKFDHMIHYVDQLKGFKYPGELLKIHSGGKHHQYGTFNRLTYINGNYIELLDVENVEK LKKEAKTEKGRVAFATKIVQDNFKQGFKTMAFRTEDIERVKQSLNERHIDTIGPINMDRE NKKGEKIRWKLLYIADPDYMVRPPFFIEWNKNKVDHMQNLDSFFQKQFKIDKIIIDSSKR SKTLTKWQSWFNMDIIEENENYTDLKLEGDTIVYRIQDAAQSGYNTIVFKDNETMTPYSI IIKGAKYRFEPNEGTN >gi|312979655|gb|ACRM01000010.1| GENE 43 37225 - 37479 270 84 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474681|ref|ZP_04059412.1| ## NR: gi|228474681|ref|ZP_04059412.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 84 1 84 84 77 98.0 2e-13 MRNIILLIFIVCNAIAIIYTMAHPLTINFFSLRVMFVALSLVLTILFILLKTNRFSLILS LISLVLIFIHIAFIAHSTYTYLFN >gi|312979655|gb|ACRM01000010.1| GENE 44 37647 - 38909 1721 420 aa, chain + ## HITS:1 COG:SA2057 KEGG:ns NR:ns ## COG: SA2057 COG2348 # Protein_GI_number: 15927842 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 420 1 421 421 645 77.0 0 MEKMNITNQEHDEFVKTHPNGDLLQLTKWAETKRLTGWYSKRVAVGENGEIKGVGQLLFK KIPKLPFTLCYVSRGFVADYNDRDVLRALLNETKKIAKEEKAYAIKIDPDVEVEHGTETL KNLRMLGFKHKGFKEGLSKDYIQPRMTMITPIDKTDDEIIQNFERRNRSKVRLALKRGTK VEHSNREGLKTFAKLMQITGERDGFLTRDISYFENIYDSLHEDGDAELFLVKLEPQQVLD ETNKDLEAQEAEKAKLEAKSEARPNDKKTANKLNDIKNKISKTTELKEDLERLNQEHPEG VYLSGALLMFAGKKSYYLYGASSNDYRDFLPNHHMQYEMMKYARDHGATTYDFGGTDNNP SKDSEHYGLWAFKRVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKLSRKLKRK >gi|312979655|gb|ACRM01000010.1| GENE 45 39016 - 42189 3258 1057 aa, chain + ## HITS:1 COG:SA2056 KEGG:ns NR:ns ## COG: SA2056 COG0841 # Protein_GI_number: 15927841 # Func_class: V Defense mechanisms # Function: Cation/multidrug efflux pump # Organism: Staphylococcus aureus N315 # 1 1057 1 1055 1055 1383 73.0 0 MIKKMLQFSLGNKFAIFLMVLLVIIGGIYSSAKLKLELLPDVENPIISVQTTMSGATPQT TQGEISSKIDKQVRSLAYVKSVETQSISNASIVKVEYNNGTDMDKAEEVLKKEIDKIDFK DGVSEPELIRNSIDAFPIVAYSFTNESNDLRTTTKEINEQLIPKLQTVDGVQSAQLNGQT TRQVTLKFKQKELDKVGLSADDVENYIKTATRETPLGLFQFGNNEKSLVVDGQFKSVSAL KDLKIPLSIAGQGQSSDSNDNSISSTGQEGSQSSSSSQSQANSSLKETNGQMPSVPLKDL AKITVGDERDSISKTNGKDAVNVQVMKAQDANTVQVARATQKKIDEFVKNNSDIKATKTM DTAKPIEDSLYTMIEKAALGTIAAIIVILLFLRNIKTTAISIVSIPLSILIALIALKLSN VSLNILTLGALTIAIGRVIDDSIVVVENIYRRLSDPGEQLKGNNLVISATREVFKPILSS TIVTIIVFLPLAFVSGSVGEMFRPFALAITFSLLASLLVSITVVPALASTFFKNGIKING NVNEENKLGRISKEYKRVLGWSLNHKWLVLIISIVILIASIGIGAAKLGTSYISTGEDKF LALTYTPKPGETEEAVLKHAEKAQKYLQSKDKVKTVQFSVGGPSPADPTGSTNSMAIMVE YDSDTPHFEEEPDKVVTHLSKLKDPGEWKNLDLGTGAGNNSVDVTVKGPSTDAIRSTVTK VENKMKSIKGVADVNSDLSQTYDQYEIKVDQNKATDKGISAAQLALNLNENLPEKTITTV KENGNNIDVKVKQNKQTNWSQNKLENIDLHAPSGETVKLKDIARLNKTTTPSKLVQKDGD YATTVSGKITASDVGGTSSKVMREINTIDKPNNVKFNVGGATDDINTAMSQLAFAMLIAI VIVYLVLVITFKGGLAPFTILFSLPFTAIGIVFALLITRETISVPSLIGMLMLIGIVVTN AIVLIDRVISNEHQGMLMKEALIEAGGTRIRPILMTAVATIGALLPLLFGQNSSILISKG MAATVIGGLVSSTLLTLIVVPVIYEILFTLKNKLTRK >gi|312979655|gb|ACRM01000010.1| GENE 46 42257 - 42574 251 105 aa, chain - ## HITS:1 COG:no KEGG:SH0792 NR:ns ## KEGG: SH0792 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 105 1 105 105 79 77.0 3e-14 MKIYLILLPILYLIVSYISIFKMKSMFVHILRIIMGILLLFVVAITTIQFPSENWWVFVV LLLLVGNVEVTAFKALKNDHKGVSILNIISIIIFVIYIILTFTMY >gi|312979655|gb|ACRM01000010.1| GENE 47 42647 - 42814 285 55 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELESQLAELKYDYIRLQNDLEKKESLNQQIDPLVKQLEEIEKEISDIRSKLRQK >gi|312979655|gb|ACRM01000010.1| GENE 48 42947 - 43855 1061 302 aa, chain + ## HITS:1 COG:SA2054 KEGG:ns NR:ns ## COG: SA2054 COG0679 # Protein_GI_number: 15927838 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 1 302 1 302 302 383 74.0 1e-106 MTEQFIIIILLIALGYLLKRINFIKSADSQVLSTLVLNVTLPSLVIVNLNSANLDLSFSI LPIMMLIYGILAKVIMVALFRKYDNHVKGSVGMMAASLNIGLFAYPLVETIWPKNGMIYF GMADIGGAIIMFGVTYFVGSYFSEGSDQFNFKFLGKKLISSVPLVTYIVMFILNMANIHL PKASIDFFTIISKANMPLSMILLGIMLSFRIEKQFLPIAVKYLIVHYGLGCIAGLLVHFF LPTSDDMIKTTLLITWLLPVGVAIIPYSIQFKYKTLPLVGMVTNISIVISIIIIYIYQAI FV >gi|312979655|gb|ACRM01000010.1| GENE 49 43926 - 44717 1263 263 aa, chain - ## HITS:1 COG:BS_gdh KEGG:ns NR:ns ## COG: BS_gdh COG1028 # Protein_GI_number: 16077461 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Bacillus subtilis # 1 263 1 261 261 295 56.0 8e-80 MFSELENKVVVITGSGSGIGKAMAEVFGKEKAKVVLNYRSENHMEELDALQETIKKSGGD SITVQADVSVEEDVKRLVETAVKEFGTVDIMINNAGFEKATPSHEMSMAEWQKVLDINLT GAFIGSREAVKQFLKEDKKGIIINTSSVHDTIPWPNYVNYAASKGGLKLMMETMSMEYAQ HGIRINNISPGAVVTEHTKEKFSDPKTRAETLEMIPAREIGDAKDVANGALFLASNLASY VHGTTLYVDGGMMNYPAFMGGKG >gi|312979655|gb|ACRM01000010.1| GENE 50 44739 - 45602 1408 287 aa, chain - ## HITS:1 COG:SA2053 KEGG:ns NR:ns ## COG: SA2053 COG4975 # Protein_GI_number: 15927836 # Func_class: G Carbohydrate transport and metabolism # Function: Putative glucose uptake permease # Organism: Staphylococcus aureus N315 # 1 287 1 287 287 357 78.0 1e-98 MQIINILIALLPALFWGSLVLINVFVGGGPYNQIRGTTLGTLVIGLILLLTGHAQFDNPT VIIVGLISGAMWAFGQGTQLQSVNLVGVSKTMPISTGLQLVGTTLFSAIFLGEWSTGLQV TLGLIAMVLLVTGIALTSLKGKNERSTKDPNFSKAMVILVVGTLGYVGYVVIGNIFGVNG TDALFFQSVGMAIGGFLLSMRHETNIKSTALNIIPGIVWGIGNLFMFYSQPKVGVATSFS LSQLLVIVSTLGGIFLLGEKKDRRQMIGIWSGIALIIIAAIILGNLK >gi|312979655|gb|ACRM01000010.1| GENE 51 45889 - 48024 1985 711 aa, chain + ## HITS:1 COG:SA2051_1 KEGG:ns NR:ns ## COG: SA2051_1 COG0550 # Protein_GI_number: 15927834 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Staphylococcus aureus N315 # 1 596 1 596 596 800 70.0 0 MKSLILAEKPSVARDIAEALNIKEKHHGYIANQRYIVTWALGHLVTNAQPEHYDKTYKEW KLEDLPILPKQMHTVVIGKTSKQFKIVKSLILNKDVKNIIIATDAGREGELVARLILDKV KNKKPIKRLWISSVTKKAIQQGFKHLKDGHEYNHLYQAALARSEADWIVGINATRALTTK YDAQLSLGRVQTPTIQLVYHRQQEINHFKPQKYYTLSLNVNDATFDIQTNKRFTNKEEIQ KLSEKIEGQSGQIEDVSIKQKKSYAKPLYNLTDLQQASYQRFKIGPKETLNILQSLYERH KLLTYPRTDSNYLSNDMTDTIQERLQALLATDYKSHARQLMTKSFTTKMHIFNNQKVSDH HAIIPTEIRPNFDTLTNRETKIYLMVVQRFLETLMDPYQYEATQVILKVGEYQFKHAENV TRKLGFKTLSNNDSTSNKTITFSKNETYRVQQVKVSEHETTPPEYFNEGSLLKAMENPQN YIQLNDKKYANTLHKTGGIGTVATRADIIEKLFKLNAIESKDGKLKVTSKGKQILELSPK ALTSPLMTAEWEEKLLSIEKGKYNAKQFINEMKDFTKKIVGEIKHSDQKYKHDNLTSTEC PNCGKFMIKVKTKNGQMLVCQDPTCHTKKNIQRKTNARCPNCKKKMTLFGRGKEAVYRCV CGHTETQAQMDQRLKNKNNGKVSKKDMKKYMNNHDELDNNPFKDALKNLKL >gi|312979655|gb|ACRM01000010.1| GENE 52 48137 - 49471 1545 444 aa, chain + ## HITS:1 COG:SA2050 KEGG:ns NR:ns ## COG: SA2050 COG2252 # Protein_GI_number: 15927833 # Func_class: R General function prediction only # Function: Permeases # Organism: Staphylococcus aureus N315 # 1 444 1 444 444 657 91.0 0 MKKYFQFDEYGTNYKREIIGGITTFLSMAYILAVNPQVLSLAGVKGISGDMKMDQGAIFV ATALAAFVGSLFMGLIARYPIALAPGMGLNAFFAFTVVLTMGIPWQIGLTGVLFSGIFFA ILTATGLREIIINAIPYEMKMAVSAGIGLFITFVGLQSAGIIVKNDSTLVTLGHLTKPSV LLAIFGIAITIILYARKVPGSIFIGMIITAIVGMITGQIHTPSGIVGKIPSITPTFGAAF EAFKDPGQLFTIQFLIVILTFFFIDFFDTAGTLVAVATQAGIMKDNKLPRAGRALFADSL ATIVGAIFGTTTTTSYIESTSGVAVGARTGFASIITGFCFLLALFFSPLIEVVTSAVTTP ALVVVGILMAANFAEINWKKFEVAVPAFITIIMMPLSYSIATGIACGFIFYPITMLITKK HKEVHPIMYVLMVLFILYFVFVHG >gi|312979655|gb|ACRM01000010.1| GENE 53 49529 - 49918 484 129 aa, chain - ## HITS:1 COG:no KEGG:SERP1834 NR:ns ## KEGG: SERP1834 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 124 1 124 132 152 76.0 4e-36 MKRNVKLTLSIISIFLIASEFFYGIPFLGGTVILSFGWQPLLLNALLYLILGIILLVDSQ NTIKPMAMIPFIGLIGSFVAFLPIIGMFTHWVLFFLMVFFIFVVLNAPTYIPNKDSKVIY TQYKDDKNN >gi|312979655|gb|ACRM01000010.1| GENE 54 50302 - 50610 512 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15927831|ref|NP_375364.1| 30S ribosomal protein S10 [Staphylococcus aureus subsp. aureus N315] # 1 102 1 102 102 201 100 9e-51 MAKQKIRIRLKAYDHRVIDQSAEKIVETAKRSGADVSGPIPLPTEKSVYTIIRAVHKYKD SREQFEQRTHKRLIDIVNPTPKTVDALMGLNLPSGVDIEIKL >gi|312979655|gb|ACRM01000010.1| GENE 55 50638 - 51300 1135 220 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474733|ref|ZP_04059464.1| 50S ribosomal protein L3 [Staphylococcus hominis SK119] # 1 220 1 220 220 441 100 1e-123 MTKGILGRKIGMTQVFGENGELIPVTVVEANQNVVLQKKTEEVDGYNAIQVGFADKQAYK KDAKSNKYANKPAEGHAKKAGAAPKRFIREFRNVNVDEYEVGQEVTVDTFEAGDIIDVTG TSKGKGFQGAIKRHGQGRGPMAHGSHFHRAPGSVGMASDASRVFKGQKMPGRMGGNTVTV QNLEVVQVDTDNNVILVKGNVPGPKKGFVEIKSSIKKGNK >gi|312979655|gb|ACRM01000010.1| GENE 56 51328 - 51951 1040 207 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474532|ref|ZP_04059263.1| ribosomal protein L4/L1 family protein [Staphylococcus hominis SK119] # 1 207 1 207 207 405 100 1e-112 MANYDVLKVDGSKSGSVELSDSVFAIEPNNSVLFEAINLQRASLRQGTHAVKNRSAVRGG GRKPWRQKGTGRARQGTIRAPQWRGGGIVFGPTPRSYSYKMPKKMRRLALRSALSFKVQE NNFTIVDTFGFDAPKTKEFKNVLTTLEQPKKVLVVTENEDVNVELSARNIPGVQVSTAQG LNVLDITSADSVIITESAAKKVEEVLG >gi|312979655|gb|ACRM01000010.1| GENE 57 51951 - 52226 455 91 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474611|ref|ZP_04059342.1| ribosomal protein L23 [Staphylococcus hominis SK119] # 1 91 1 91 91 179 100 4e-44 MEARDVLKRPVITEKSSEAMAEDKYTFDVDTRANKTQVKIAVEEIFDVKVESVNIINYKP KKKRMGRYQGYTNKRRKAIVKLKEGSIDLFN >gi|312979655|gb|ACRM01000010.1| GENE 58 52263 - 53096 1439 277 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474682|ref|ZP_04059413.1| ribosomal protein L2 [Staphylococcus hominis SK119] # 1 277 1 277 277 558 100 1e-158 MALKKYKPITNGRRNMTTLDFAEITKTTPEKSLLQPLPKKAGRNNQGKLTVRHHGGGHKR QYRVIDFKRNKDGITAKVDSIQYDPNRSANIALLVYADGEKRYIIAPKGLQVGQTVESGA EADIKVGNALPLQNIPVGTVIHNIELKPGKGGQIARSAGASSQVLGKEGKYVLIRLRSGE VRMILSTCRATIGQVGNLQHELVNAGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAP IGRPSPMSPWGKPTLGKKTRRGKKSSDKLIVRGRKRK >gi|312979655|gb|ACRM01000010.1| GENE 59 53161 - 53439 489 92 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474553|ref|ZP_04059284.1| ribosomal protein S19 [Staphylococcus hominis SK119] # 1 92 1 92 92 192 100 4e-48 MARSIKKGPFVDDHLMKKVEAQDGSEKKQVIKTWSRRSTIFPNFIGHTFAVYDGRKHVPV YVTEDMVGHKLGEFAPTRTFKGHAADDKKTSR >gi|312979655|gb|ACRM01000010.1| GENE 60 53470 - 53823 569 117 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468737|ref|NP_765374.1| 50S ribosomal protein L22 [Staphylococcus epidermidis ATCC 12228] # 1 117 1 117 117 223 100 2e-57 MEAKAVARTIRIAPRKVRLVLDLIRGKNAGEAIAILKLTNKASSPVIEKVLMSALANAEH NYDMNTDELVVKEAYANEGPTLKRFRPRAQGRASAINKRTSHITIVVSDGKEEAKEA >gi|312979655|gb|ACRM01000010.1| GENE 61 53847 - 54500 1099 217 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474735|ref|ZP_04059466.1| ribosomal protein S3 [Staphylococcus hominis SK119] # 1 217 1 217 217 427 99 1e-119 MGQKINPIGLRVGVIRDWEAKWYAEKDFASLLHEDLRIRKFIDNELKEASVSHVDIERAA NRINIAIHTGKPGMVIGKGGSEIEKLRNKLNNLTDKKVHINVVEIKKVDIDARLVAENIA RQLENRASFRRVQKQAITRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRAD IDYAHAEADTTYGKLGVKVWIYRGEVLPTKNTSEGGK >gi|312979655|gb|ACRM01000010.1| GENE 62 54503 - 54937 747 144 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474581|ref|ZP_04059312.1| ribosomal protein L16 [Staphylococcus hominis SK119] # 1 144 1 144 144 292 100 5e-78 MLLPKRVKYRRQHRPKTTGRSKGGNFVTFGEYGLQATTTSWITSRQIESARIAMTRYMKR GGKVWIKIFPHTPYTKKPLEVRMGAGKGAVEGWIAVVKPGRILFEIAGVSEDVAREALRL ASHKLPVKTKFVKREELGGETNES >gi|312979655|gb|ACRM01000010.1| GENE 63 54915 - 55136 342 73 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|21283890|ref|NP_646978.1| 50S ribosomal protein L29 [Staphylococcus aureus subsp. aureus MW2] # 1 73 1 73 73 136 98 5e-31 MVKQMKAKEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTV AREREIEQSKANQ >gi|312979655|gb|ACRM01000010.1| GENE 64 55163 - 55426 430 87 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474652|ref|ZP_04059383.1| 30S ribosomal protein S17 [Staphylococcus hominis SK119] # 1 87 1 87 87 170 98 3e-41 MSERNDRKVYVGKVVSDKMDKTITVLVETYKTHKLYGKRVKYSKKYKTHDENNSAKLGDI VRIQETRPLSASKRFRLVEIVEESVII >gi|312979655|gb|ACRM01000010.1| GENE 65 55458 - 55826 612 122 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|223042484|ref|ZP_03612533.1| ribosomal protein L14 [Staphylococcus capitis SK14] # 1 122 1 122 122 240 100 2e-62 MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDIIVCTVKNATPGGVVKKGDVVKA VVVRTKSGVRRNDGSYIKFDENACVIIRDDKGPRGTRIFGPVARELREGNFMKIVSLAPE VL >gi|312979655|gb|ACRM01000010.1| GENE 66 55862 - 56179 536 105 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474668|ref|ZP_04059399.1| ribosomal protein L24 [Staphylococcus hominis SK119] # 1 105 1 105 105 211 100 1e-53 MHIKKGDNVKVIAGKDKGKEGKVIATEPKKDRVVVEGVNVIKKHQKPTQLNPEGGILETE AAIHVSNVQLLDPKTNEPTRVGYKFVDGKKVRIAKKSGEEIKSNN >gi|312979655|gb|ACRM01000010.1| GENE 67 56187 - 56744 910 185 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|242243959|ref|ZP_04798402.1| 50S ribosomal protein L5 [Staphylococcus epidermidis W23144] # 1 185 1 185 185 355 96 6e-97 MKGGSTLNRLKERYNTEVTQNLVKKFNYSSVMEVPKIEKIVVNMGVGDAVQNSKVLDNAV EELELITGQKPLITKAKKSVATFRLREGMPIGAKVTLRGERMYEFLDKLIAVSLPRVRDF QGVSKTAFDGRGNYTLGIKEQLIFPEIDYDKVSKVRGMDIVIVTTANTDEEARELLTNFG MPFRK >gi|312979655|gb|ACRM01000010.1| GENE 68 56767 - 56952 327 61 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15925227|ref|NP_372761.1| 30S ribosomal protein S14 [Staphylococcus aureus subsp. aureus Mu50] # 1 61 1 61 61 130 98 3e-29 MAKTSMVAKQQKKQKYAVREYTRCERCGRPHSVYRKFKLCRICFRELAYKGQIPGVRKAS W >gi|312979655|gb|ACRM01000010.1| GENE 69 56984 - 57382 663 132 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474724|ref|ZP_04059455.1| ribosomal protein S8 [Staphylococcus hominis SK119] # 1 132 1 132 132 259 100 3e-68 MTMTDPIADMLTRVRNANMVRHEKLELPASNIKKQIAEILKNEGFIKNVEYVEDDKQGVI RLFLKYGQNNERVITGLKRISKPGLRVYAKANEVPKVLNGLGIALVSTSEGVITDKEARK RNVGGEIIAYVW >gi|312979655|gb|ACRM01000010.1| GENE 70 57407 - 57943 905 178 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474790|ref|ZP_04059521.1| ribosomal protein L6 [Staphylococcus hominis SK119] # 1 178 1 178 178 353 99 2e-96 MSRVGKKIIDIPSDVTVTFDGQTATVKGPKGELTRTFDERMTFKQDENTLEVVRPTDSKE DRTVHGTTRALLNNMVQGVSQGFVKTLELVGVGYRAQMQGNDLILNVGYSHPVEIKAEDG ITFAVEKNTTVTVSGVSKEQVGAIASNIRSVRPPEPYKGKGIRYQGEYVRRKEGKTGK >gi|312979655|gb|ACRM01000010.1| GENE 71 57975 - 58337 594 120 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474575|ref|ZP_04059306.1| ribosomal protein L18 [Staphylococcus hominis SK119] # 1 120 1 120 120 233 100 3e-60 MISKIDKNKVRLKRHARVRTKLSGTAEKPRLNVYRSNKHIYAQIIDDAKGETLVQASSQD KDIASDSTSKVDLSTKVGEVIAKKASDKGIKEIVFDRGGYLYHGRVKALAEAARENGLEF >gi|312979655|gb|ACRM01000010.1| GENE 72 58358 - 58858 825 166 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474613|ref|ZP_04059344.1| ribosomal protein S5 [Staphylococcus hominis SK119] # 1 166 1 166 166 322 100 5e-87 MARREEETKEFEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGRVGFGTGKAQEVPEAI KKAVEAAKKDLVVVPRVEGTTPHTITGRYGSGSVFMKPAAPGTGVIAGGPVRAVLELAGI TDILSKSLGSNTPINMVRATLNGLQNLKNAEDVAKLRGKSVEELYN >gi|312979655|gb|ACRM01000010.1| GENE 73 58875 - 59054 286 59 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474712|ref|ZP_04059443.1| ribosomal protein L30 [Staphylococcus hominis SK119] # 1 59 1 59 59 114 100 1e-24 MAKLQITLTRSVIGRPETQRKTVEALGLKKTNSSVVVEDNPAIRGQINKVKHLLTVEEK >gi|312979655|gb|ACRM01000010.1| GENE 74 59074 - 59514 736 146 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474744|ref|ZP_04059475.1| ribosomal protein L15 [Staphylococcus hominis SK119] # 1 146 1 146 146 288 100 1e-76 MKLHELKSAEGSRRVRNRVGRGAGSGNGKTSARGQKGQKARSGGSVRPGFEGGQLPLFRR LPKRGFTNINRKEYAIVNLDQLNQFEDGTEVTPALLVETGVVKNEKSGIKVLGNGSLDKK LTVKAHKFSASAVEAIDAKGGAHEVI >gi|312979655|gb|ACRM01000010.1| GENE 75 59514 - 60806 736 430 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163796899|ref|ZP_02190856.1| 30S ribosomal protein S11 [alpha proteobacterium BAL199] # 5 426 14 435 447 288 37 1e-76 MFQTFMSFFKTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPEPFEQQGSDQGVAALLNTF GGGALKNFSIFAMGIMPYITASIVMQLLQMDIVPKFTEWAKQGEVGKRKLSNVTRYFAII LAFIQSIGMAFQFNNYLGGKLIIHQSVMSYLLIAVVLTTGTAFLIWLGDQITQFGVGNGI SIIIFAGILSTLPSSIIQFVQQAFVGNDDTTLAWLKVIGLIVGLILLTIGAIYVLEAKRK IPIQYAKKQSAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFFPKADWAQNIA EYANPSNTYGMIVYVILIIAFAYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT KVLYRLTFVGSIFLAVIAILPIIATKFMNLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS QKEYKGFGGR >gi|312979655|gb|ACRM01000010.1| GENE 76 60825 - 61475 903 216 aa, chain + ## HITS:1 COG:SA2027 KEGG:ns NR:ns ## COG: SA2027 COG0563 # Protein_GI_number: 15927809 # Func_class: F Nucleotide transport and metabolism # Function: Adenylate kinase and related kinases # Organism: Staphylococcus aureus N315 # 1 215 1 215 215 385 93.0 1e-107 MNIILMGLPGAGKGTQASEIVKKFPIPHISTGDMFRKAIKDETDLGKEAKSYMDRGELVP DEVTVGIVKERISEDDAKKGFLLDGFPRTIEQAEALNNIMSELDRNIDAVINIEVPEEEL MNRLTGRRICEKCGTTYHLVFNPPKVDGVCDIDGGKLYQRKDDNPETVSNRLSVNVKQSK PILEYYDEKGVLKNIDGAKDIDEVTKDVIDILDQLK >gi|312979655|gb|ACRM01000010.1| GENE 77 61675 - 61893 306 72 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900168|ref|NP_344772.1| translation initiation factor IF-1 [Streptococcus pneumoniae TIGR4] # 1 72 1 72 72 122 81 7e-27 MAKQDVIELEGTVLDTLPNAMFKVELENGHEILAHVSGKIRMNYIRILPGDKVTVEMSPY DLSRGRITYRYK >gi|312979655|gb|ACRM01000010.1| GENE 78 61925 - 62038 201 37 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|27468718|ref|NP_765355.1| 50S ribosomal protein L36 [Staphylococcus epidermidis ATCC 12228] # 1 37 1 37 37 82 100 1e-14 MKVRPSVKPICEKCKVIKRKGKVMVICDNPKHKQRQG >gi|312979655|gb|ACRM01000010.1| GENE 79 62061 - 62426 604 121 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474843|ref|ZP_04059574.1| 30S ribosomal protein S13 [Staphylococcus hominis SK119] # 1 121 1 121 121 237 100 2e-61 MARIAGVDIPREKRVVISLTYVYGIGTSTAKKIVEEANVSADTRVKDLTDDELGRIREVV DGYKVEGDLRREQNLNIKRLMEISSYRGIRHRRGLPVRGQKTKNNARTRKGPVKTVANKK K >gi|312979655|gb|ACRM01000010.1| GENE 80 62450 - 62839 653 129 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15925215|ref|NP_372749.1| 30S ribosomal protein S11 [Staphylococcus aureus subsp. aureus Mu50] # 1 129 1 129 129 256 100 4e-67 MARKQVSRKRRVKKNIENGVAHIRSTFNNTIVTITDEFGNALSWSSAGALGFKGSKKSTP FAAQMASETASKSAMEHGLKTVEVTVKGPGPGRESAIRALQSAGLEVTAIRDVTPVPHNG CRPPKRRRV >gi|312979655|gb|ACRM01000010.1| GENE 81 62922 - 63866 1278 314 aa, chain + ## HITS:1 COG:SA2023 KEGG:ns NR:ns ## COG: SA2023 COG0202 # Protein_GI_number: 15927804 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, alpha subunit/40 kD subunit # Organism: Staphylococcus aureus N315 # 1 314 1 314 314 551 99.0 1e-157 MIEIEKPRIETIEISEDAKFGKFVVEPLERGYGTTLGNSLRRILLSSLPGAAVKYIEIEG VLHEFSAIDNVVEDVSTIIMNIKKLALKIYSEEDKTLEIDVRDEGEVTASDITHDSDVEV LNPELKIATVSKGGHLKIRLVANKGRGYALAEQNNTSDLPIGVIPVDSLYSPVERVNYTV ENTRVGQSSDFDKLTLDVWTNGSITPQESVSLAAKIMTEHLNIFVGLTDEAQNAEIMIEK EEDQKEKVLEMSIEELDLSVRSYNCLKRAGINSVQELADKSEADMMKVRNLGRKSLEEVK YKLEDLGLGLRKED >gi|312979655|gb|ACRM01000010.1| GENE 82 63888 - 64259 591 123 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474700|ref|ZP_04059431.1| ribosomal protein L17 [Staphylococcus hominis SK119] # 1 123 1 123 123 232 99 6e-60 MGYRKLGRTSDQRKAMLRDLATSLIVSERIETTEARAKEVRSVVEKLITLGKKGDLASRR NAAKILRNVEILNEDETTQTALQKLFGEIAERYAERQGGYTRILKVGPRRGDGAESVIIE LVD >gi|312979655|gb|ACRM01000010.1| GENE 83 64561 - 65373 405 270 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 12 254 133 375 398 160 34 2e-38 MKTDNNNIIELKHVHFQYQNDAAFTLEDVSFNIPKHQWTSIVGHNGSGKSTIAKLIVGIE QATEGEIFYNNHLVTPDYLREVRRHIGIVFQNPENQFVGSIVEYDVAFGLENHAVSHDKM KAIVIQSLDNVDMKEYMEYEPHSLSGGQKQRVAIAGVLALSPDVIILDEATSMLDPQGKQ SLLSLIKQVKQEKNLTIISITHDLSEALESDHVVIMNKGKVYKEGKPNFIFLNTQYLVEI GLDLPFAMKMNQKLGFKDEFTTYEGLVDKL >gi|312979655|gb|ACRM01000010.1| GENE 84 65370 - 66233 346 287 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229849245|ref|ZP_04469311.1| LSU ribosomal protein L17P [Thermanaerovibrio acidaminovorans DSM 6589] # 5 260 132 378 398 137 30 2e-31 MTIQFNHVSYIYQKGTPYEYQALNDINLKIEQGKYYAIVGQTGSGKSTLIQHFNGLLKPT KGSITFDNKEITHKTKDKHLRELRQQVGLVFQFPESQLFEDSVEREVAFGPKNFKMNVEQ VKSYAYQLLLDLGFDHHIMEQSPFEMSGGQMRKIALVSILAMKPNIIILDEPTAGLDPKS RQQVMELIKSIQVNHHKTVILVSHDMNDVARYAEEIIVMRQGKVIEQCSPKSLFRQHKKL KDWHIALPDVVQLQYDFEDKYQTMFNDIALNEDEFVTLYQEWQEHEK >gi|312979655|gb|ACRM01000010.1| GENE 85 66223 - 67029 831 268 aa, chain + ## HITS:1 COG:SA2019 KEGG:ns NR:ns ## COG: SA2019 COG0619 # Protein_GI_number: 15927800 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 1 268 1 268 268 349 76.0 4e-96 MKNKLIIGRYLPNNSVIHRLDPRAKLIFVFVFIIFIFFAHSFATFAWVILLILCFMKMAK IQFWFLIKGLTPIFFFLIFTFVMHIFFTHGGTTLLEIGFIKIDSTGVLEGVFISLRLITI VMVATIMTLSTSPIDLTDAFEKLMAPLKLFKIPVHQLSMIMSIALRFIPTLMDELDKIIL AQKSRGSEISSGSLMTRIKAFIPLMIPLFISAFQRADELAIAMEVRGYDANVQRTSYRKL SWHKRDTLSLFSLIPIGMILFILKYMGV >gi|312979655|gb|ACRM01000010.1| GENE 86 67034 - 67837 1063 267 aa, chain + ## HITS:1 COG:SA2018 KEGG:ns NR:ns ## COG: SA2018 COG0101 # Protein_GI_number: 15927799 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthase # Organism: Staphylococcus aureus N315 # 1 267 1 267 267 439 80.0 1e-123 MRILVNIAYQGHGFLGFQIQQQGRTVQQQFEKILKRMHRRHVRIHPSSRTDRGVHAYEQY FHFDTELNIEPKQWIYAMNSALPEDIYVNSVKQVDDTFHCRYDCVGKRYRYKVYQAEHRN PFESGLKTFIKDDLDLDKMNEAAKHFIGTHDFTGFCSQKTEVESKERTLYQSEVVKTDEG FDYIVTGSGFLYNMVRVLVAFLVEVGKGKRQPNEVPELLKAKNRDNVPFTAPAEGLYLEK IYLDPEALKNDFGEDVKIHYKKSLQND >gi|312979655|gb|ACRM01000010.1| GENE 87 68088 - 68525 745 145 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474824|ref|ZP_04059555.1| ribosomal protein L13 [Staphylococcus hominis SK119] # 1 145 1 145 145 291 99 9e-78 MRQTFMANESNIERKWYVIDAEGQTLGRLSSEVASILRGKNKVTYTPHDDTGDYVIIINA EKIELTGKKEQDKVYYRHSNHPGGIKSVTAGELKRNNPARLLETSIKGMLPSSRLGEKQG KKLFVYSGAEHPHAAQQPENYELRG >gi|312979655|gb|ACRM01000010.1| GENE 88 68545 - 68937 664 130 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474549|ref|ZP_04059280.1| ribosomal protein S9 [Staphylococcus hominis SK119] # 1 130 1 130 130 260 99 2e-68 MAQVEYRGTGRRKNSVARVRLVPGEGNITVNDRDVREYLPFESLILDLNQPFDVTETKGN YDVLVNVYGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKK ARRSPQFSKR >gi|312979655|gb|ACRM01000010.1| GENE 89 69157 - 69888 800 243 aa, chain - ## HITS:1 COG:SA1999 KEGG:ns NR:ns ## COG: SA1999 COG0846 # Protein_GI_number: 15927777 # Func_class: K Transcription # Function: NAD-dependent protein deacetylases, SIR2 family # Organism: Staphylococcus aureus N315 # 1 243 1 243 243 364 70.0 1e-101 MSNKIEKLKEIVDKSNKIVFFTGAGVSVASGIPDFRSMGGLFDEISKEGYSPEYLLSIDH LNDNKESFIDFYHKRLLVADKKPNIVHEWIAELEKEGKSLGVITQNIDGLHEDAGSEHID EIHGTLNRFYCINCGKEYTKSYVMGHKLRYCENCGDVIRPDIVLYGEMLDQPTVFRALDK IQKADTVIVLGSSLVVQPAAGFISNFTGDNLVIINRDATPYDRKANLVIHSDMTEVVEEV MKK >gi|312979655|gb|ACRM01000010.1| GENE 90 70094 - 70849 682 251 aa, chain + ## HITS:1 COG:SA1998 KEGG:ns NR:ns ## COG: SA1998 COG1349 # Protein_GI_number: 15927776 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Staphylococcus aureus N315 # 1 250 1 250 251 317 66.0 2e-86 MNKYDRLEEITKLVNQKGTVRTNEIVEELNVSDMTVRRDLAELEEKGLLTKIHGGARSNS AFQIKEKSHQEKHTENIEEKRAVARKAVNLIEENDTIFLGPGTTIELLAQLIERESLTVI TNCFPVFQILFEKRSLNFKVYLLGGEMRELTESFVGEMTNTLLKTKRFSKMFFSCNGIKD ADVLTSTIDEAYTQQLALHRSLEKYLLIDTSKIGKEDFTQLCHLEDLTAVVVDKNDEDNV QKLKAYTEVIH >gi|312979655|gb|ACRM01000010.1| GENE 91 71081 - 71509 706 142 aa, chain + ## HITS:1 COG:SA1997 KEGG:ns NR:ns ## COG: SA1997 COG0698 # Protein_GI_number: 15927775 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 142 1 142 142 204 76.0 4e-53 MTIFIGSDVAGQRLKDVIKTFLKENNHDVVDVTEGKELDFVDSTLAVVHEVQKNDDNLGI AVDAYGAGSFIVATKVKGMIAAEVSDERSAYMTRSHNNARMITMGSEIVGDTLAKNIAKE FVNGHYDGGRHQIRVDMLNKMC >gi|312979655|gb|ACRM01000010.1| GENE 92 71525 - 72040 741 171 aa, chain + ## HITS:1 COG:SA1996 KEGG:ns NR:ns ## COG: SA1996 COG0698 # Protein_GI_number: 15927774 # Func_class: G Carbohydrate transport and metabolism # Function: Ribose 5-phosphate isomerase RpiB # Organism: Staphylococcus aureus N315 # 1 171 1 171 171 294 81.0 7e-80 MKIAIGCDHIVTDTKMEVSQHLKAQGHEVIDVGTYDFTRTHYPIFGKKVGEKVASGEADL GVCICGTGVGISNAANKVPGVRTALVRDMTSALYSKEELNANVVSFGGKVAGELFIFDIV DAFIEAEYKPTEENKKLIAKINHLEAHNDNQANPHFFDEFLEKWDKGEYHD >gi|312979655|gb|ACRM01000010.1| GENE 93 72053 - 72985 1097 310 aa, chain + ## HITS:1 COG:SA1995 KEGG:ns NR:ns ## COG: SA1995 COG1105 # Protein_GI_number: 15927773 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 310 1 310 310 394 63.0 1e-109 MILTLTLNPSVDISYPLEQFHLDTVNRVKKTSKTAGGKGLNVTRVLSEFGENVLASGFLG GALGQFIEEQLTDAQIEQSFFKIKGETRNCIAILHEGQQTEILEQGPTIGKEEAESYKTH LLELFKRANVIAMSGSLPKGLNTNYYADIVKLANEQGLPTILDSSGQSLMDVLLSENKPS VIKPNIDELSQLLHTTVTTDIDSLKEAVTQPIFKGIEWIIVSLGGDGAFAKHHQTFYKVN IPKIEVVNPVGSGDSTVAGIASGLVHQQSDEDLLKKANAFGMLNAMEHQTGHINVDKFKE LFKQIEVIEV >gi|312979655|gb|ACRM01000010.1| GENE 94 72989 - 73966 1253 325 aa, chain + ## HITS:1 COG:SA1994 KEGG:ns NR:ns ## COG: SA1994 COG3684 # Protein_GI_number: 15927772 # Func_class: G Carbohydrate transport and metabolism # Function: Tagatose-1,6-bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 1 325 1 325 326 585 91.0 1e-167 MTKSQQKLASIEQLSNQDGIISALAFDQRGALKRMMAEHQTEPPTVEQIEQLKVLVSEEL TQYASSILLDPEYGLPASDARNKECGLLLAYEKTGYDVNAKGRLPDCLVEWSAKRLKEQG ANAVKFLLYYDVDDSEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNKSAEFA KVKPRKVNEAMKLFSEDRFNVDVLKVEVPVNMNFVEGFTEGEVVYTKEEAAQHFRDQEAA THLPYIYLSAGVSAELFQDTLTFAHDAGAHFNGVLCGRATWSGAVKVYIEQGEQAAREWL RTTGYKNIDDLNKVLKTTATSWKAK >gi|312979655|gb|ACRM01000010.1| GENE 95 73986 - 74300 539 104 aa, chain + ## HITS:1 COG:SA1993 KEGG:ns NR:ns ## COG: SA1993 COG1447 # Protein_GI_number: 15927771 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIA # Organism: Staphylococcus aureus N315 # 1 103 1 103 103 148 78.0 2e-36 MNREEVQLLGFEIVAYAGDARSKLLEALNAANEGDFDKAEQLTEEANECIANAHKAQTNL LAQEAQGDDIAFSITMIHGQDHLMTTLLLKDLMKHLIELYKKGS >gi|312979655|gb|ACRM01000010.1| GENE 96 74306 - 75925 1780 539 aa, chain + ## HITS:1 COG:SA1992 KEGG:ns NR:ns ## COG: SA1992 COG1455 # Protein_GI_number: 15927770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Staphylococcus aureus N315 # 1 515 2 502 570 794 78.0 0 MNKLIAWIEKGKPFFEKISRNIYLRAIRDGFIAAIPIILFSSIFILITYVPNVFGFTWSK TMEGILMKPYNYTMGIVGLIVAGTTAKSLTDSYNRKLDKTNQINFISTMMAAMSGFLFLA ADPIKEGGFLSAFMGTKGLLTAFISAFITVIVYNFFIKRNITIKMPKEVPPNISQVFKDI FPLSAVIIIIYALDLLSRTFIHTNVANAVLKIFEPLFTAADGWIGVTLIFGAFAFFWFVG IHGPSIVEPAIAAITYANLETNLNLIQAGEHADKIITPGTQMFVATMGGTGATLVVPFMF MWLTKSKRNKAIGRASVVPTFFGVNEPILFGAPLVLNPVFFIPFIFAPIANVWIFKFFVD VLKMNSFSIFLPWTTPGPLGIVMGTGFAFWSFVLAIILIVVDVMIYYPFLKVYDEQILEE ERGNKEVNNELKEKVSANFDTKKADAILATAGANEATTTEPAPSDEEVSAKESPNSINEQ TNVLVLCAGGGTSGLLANALNKAAEEYQVPVKSGSWWLWCTYGYYERLSINYFSASSCF >gi|312979655|gb|ACRM01000010.1| GENE 97 75879 - 76058 235 59 aa, chain + ## HITS:1 COG:SA1992 KEGG:ns NR:ns ## COG: SA1992 COG1455 # Protein_GI_number: 15927770 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system cellobiose-specific component IIC # Organism: Staphylococcus aureus N315 # 1 58 512 569 570 116 93.0 1e-26 MKDYQLIILAPQVASNYEDIKQDTDRLGIKLAKTQGVEYINLTRDGKAALDFVQQQFEK >gi|312979655|gb|ACRM01000010.1| GENE 98 76077 - 77486 1922 469 aa, chain + ## HITS:1 COG:SA1991 KEGG:ns NR:ns ## COG: SA1991 COG2723 # Protein_GI_number: 15927769 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase # Organism: Staphylococcus aureus N315 # 2 469 3 470 470 863 91.0 0 MKKLPEDFIFGGATAAYQAEGATQTDGKGRVAWDTYLEENYWYTAEPASDFYHKYPVDLE LSEKFGVNGIRISIAWSRIFPTGYGEVNQKGVEFYHNLFNECHKRHVEPFVTLHHFDTPE TLHSDGDFLNRKTIDYFVDYAKFCFEEFTEVNYWTTFNEIGPIGDGQYLVGKFPPGIKYD FAKVFQSHHNMMVAHAKAVKLFKDNGYNGEIGVVHALPTKYPYDSSNPEDVRAAELEDII HNKFILDATYLGKYSRETMEGVQHILSVNGGKLDITDEDYATLDAAKDLNDFLGINYYMS DWMRGYEGESEITHNATGDKGGSKYQLKGVGQREFDIDVPRTDWDWMIYPQGLYDQIMRV IKDYPNYHKIYVTENGLGYKDEFDEERKTVDDDARIDYVKKHLEVIADAIRDGANVKGYF LWSLMDVFSWSNGYEKRYGLFYVDFDTQERYPKKSAYWYKALAESKEIK >gi|312979655|gb|ACRM01000010.1| GENE 99 77591 - 77782 171 63 aa, chain + ## HITS:1 COG:SA1990 KEGG:ns NR:ns ## COG: SA1990 COG4814 # Protein_GI_number: 15927768 # Func_class: R General function prediction only # Function: Uncharacterized protein with an alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 59 145 202 289 64 55.0 5e-11 MGNLSFTYFMKSDGNHPPFPTLNKKEVNMARTYNGVLNLNEKVNEIQVDQNGKPNKMSED DKK >gi|312979655|gb|ACRM01000010.1| GENE 100 78061 - 79062 1233 333 aa, chain - ## HITS:1 COG:BH0875 KEGG:ns NR:ns ## COG: BH0875 COG2141 # Protein_GI_number: 15613438 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Bacillus halodurans # 1 327 1 327 335 228 39.0 2e-59 MKLSILDYVPLFEGDTPQEALNHSIELAQLSEKLGYARYWVAEHHQVPSVVSSAPEIVMA MLLEHTHSIHIGSGGVMLPHYSAYKVAEQFKIMEVKHPGRIDMGIGRSPSFKNVNEALNE FKTQKPKLSQQVDDLNKYFTNDTIHSHRFKTLEATPYTEHSPEMFILGMSEQSAELAAKK GLPFVIAHMGQSNANLTHVIRHYKSRFTEYHGHSHSPYIILATFVVTAENELTIKQLLDA LNLWLIRINYLKQPKVYPSIETAQQRHYSERDQEKIEKNKRRMISGLPHEVAQQLIQLQN EFEVDEIMILPNVYGHTHRTKLIELIAHACLDN >gi|312979655|gb|ACRM01000010.1| GENE 101 79202 - 80209 1275 335 aa, chain + ## HITS:1 COG:SA1989 KEGG:ns NR:ns ## COG: SA1989 COG2130 # Protein_GI_number: 15927767 # Func_class: R General function prediction only # Function: Putative NADP-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 1 333 1 333 333 483 69.0 1e-136 MNNEQVLLAKYPKGMPQDDTFKYENIDIVDPKENEIQIESLYISVDPYMRGRMTQADSYV EPFKIGEPIQSHIVGKIIKSNSEKFNEDDIIVGMLPWKRINTVNEEKISKISNTDVPLYL YLSTLGMTGQTAYHGLLEIGQPKEGDTVVVSAASGAVGAVVGQIAKIKGARVVGIAGGDK KVNYLTEELGFDAGIDYKKDDFAEALAKAVPNGVDVYFENVGGTIADEVMKHLNRHARIP VCGTISNYNNTEQEKGPRVQSTLIKHQALMRGFLVAEFADDFEHASKELATWIQEGKIKT KVSIEEGFEYLPKAFRNLFTGENFGKQIVKVSENV >gi|312979655|gb|ACRM01000010.1| GENE 102 80242 - 81255 1202 337 aa, chain + ## HITS:1 COG:SA1988 KEGG:ns NR:ns ## COG: SA1988 COG0604 # Protein_GI_number: 15927766 # Func_class: C Energy production and conversion; R General function prediction only # Function: NADPH:quinone reductase and related Zn-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 1 335 1 335 335 444 64.0 1e-124 MKAIGFKQPFKLEEGNVFETFELDMSQPSSRELLVKIQSISVNPVDTKQRLTEVKSSPRI LGFDAVGTVQKTGTEVTMFKEGDIVFYSGAPNQHGSNQEYQLIDERLVAKAPKNLSAEQA ASLPLTGITASETLFDVFKISEDPNQNKGKSLLIINGAGGVGSITTQIAKAYGLKVITTA SRQETIDWSKKMGADIVLNHKEDLKSQLEQQHIEAVDFVFCTFDTDMYYETMIDIVKPRG HVATIVAFKGSQDLNLLKTKSVSFTHEFMFTRPIFQTEDMIKHHYYLEDIAKKIENSTYQ NTTTKVINGLTTEHLYEAHQILESNSMIGKLVINVEE >gi|312979655|gb|ACRM01000010.1| GENE 103 81419 - 83008 1652 529 aa, chain + ## HITS:1 COG:SA1987 KEGG:ns NR:ns ## COG: SA1987 COG1292 # Protein_GI_number: 15927765 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Staphylococcus aureus N315 # 1 516 1 517 520 726 80.0 0 MRKKSISIVFWIALAICTLFVVYGAILPKQLEAITQNITSFIAVNFSWYYLLLVLIIFFI CVYLLFSRYASITLGVEGEEPEFSLLSWFAMLFSAGMGIGLVFWTTAEPVSHAYKATPIH KIGTQAAINDAFQFAFFHWGIHAWAVYGIVALVFAYFNFHKGYPGLVSATLVPIFGEKRM RGPIGSAIDVLAVIATVTGVAATLGFGALQINEGLHYLFKVPSHFGTQVIIIIIATILFS WSAWSGIDKGIKTLSNINMILAFIVLIGLFLVGPTLYILNTFTNGLGNYIFNFFSMSLRI PMDGGAKFQWVQNWTIFYWAWWVSWAPFVGIFIARVSRGRTIKEFILGVLFVPALVSFFF FAVFGGAAVYLQHSGIANIAKEATETATFATLEHFPLGFVLSIVSLIVIMIFFVTSADSA TYVLGMLSSKGNINPSSFVKVSWGIIMALFAMIMIYTGGTQAIQNLLIIAALPFSVVIIL MIWSLFKTLSLDHPRVSKKNVLMKKDNLQYNKTNNIKTKIIMKNRFLLC >gi|312979655|gb|ACRM01000010.1| GENE 104 83160 - 83696 623 178 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00835 NR:ns ## KEGG: SLGD_00835 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 178 1 178 178 281 78.0 5e-75 MHRFKNFILGLLIVAIVGFLLFMYIDDSRIKRYQDYFLQFNWFQPLLIGLSALLVLIGII LVFSIFKPTYRKPGLYKDYNDGHIYVSRKAVEKSAYDTLTKYDEIRQPNVVTKLYNKKNN SYIDIKADFLVPNDVQVKSLTESIRSDIKHNVEHFTEMPVRKLEINVRDQKSAGQRVL >gi|312979655|gb|ACRM01000010.1| GENE 105 83709 - 83945 389 78 aa, chain + ## HITS:1 COG:SA1985 KEGG:ns NR:ns ## COG: SA1985 COG5547 # Protein_GI_number: 15927763 # Func_class: S Function unknown # Function: Small integral membrane protein # Organism: Staphylococcus aureus N315 # 1 78 1 79 79 118 82.0 2e-27 MADNNQNSQDSTQQIIDFLKSYKWRIIGFFAFLIIAILFLTLGFWKTILIIVLCLIGIGV GYMKDRTQDFMNFLNRWS >gi|312979655|gb|ACRM01000010.1| GENE 106 84024 - 84572 827 182 aa, chain + ## HITS:1 COG:SA1984 KEGG:ns NR:ns ## COG: SA1984 COG1302 # Protein_GI_number: 15927762 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 160 1 154 169 199 83.0 2e-51 MAVDNNKAKQAYNNQTGVNEKEREERQEQAQQYREERQNNQQHFENKLTFSDEVIEKIAG IAAREVRGILDMKGGFTDSISSAFSSGNNVTQGVSVEVGEKQAAVDLKVILEYGESAPKI FRKVTDLVKEQVKYITGLDVVEVNMQVDDVMTKKEWAQKNQKNNNNNNNNNNNNNFERSD LQ >gi|312979655|gb|ACRM01000010.1| GENE 107 84683 - 86626 2117 647 aa, chain - ## HITS:1 COG:SA1983 KEGG:ns NR:ns ## COG: SA1983 COG4264 # Protein_GI_number: 15927761 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Staphylococcus aureus N315 # 1 647 1 654 658 691 56.0 0 MNQNTTINNHNLQLTNEEYDVYTYLNEFYPDLIDHFKQYILIGRDKISQRLITSLYRENL IHAKDNSQIIRPTKLTVSMFSKDKDVLCIHFPKSNIDIYSQIKGRYAFDRVDVEGPFYIL KHRNHEYERIQHPNDILDLILAEAPKLDNAASEQFREDLNNSAANMILALSYQAKHMHSN YESLWELIAKSDDSYLRSEQSVIEGHPLHPGAKLRKGMSAKENIHYSSEYGQEIQLKCVF IHNSIANVQSLSSTYNDTLHQSFHKLFTHLLNNYNNIRIEDYHLMVVHPWQFEHILLSQY QQELDEQLIIPIDMTLPYYAGLSFRTLMPKYPKLFPHIKLSTNVHITGEIRTLSEQTTHN GPLVTKIVNDILKNDPDFQPYRIETLDEIAGIHFYNSKDHSTIQTERSEQLGTLFRENIY TLIEEDTIPVIPSSLVAYYPNNTEPPIESLIKRYQLTRQFKSFEKAAYAWIQDYATQLLG IVMPLYVKYGIALEAHLQNSIATFNQDGSLSKIYIRDFEGLRIDETQLNKMGYKTSHFHK KSRILTQSTTSVFNKVFYSTVQNHLAELILTITEKVENMDFEKIMWHHISHIIQDILAKL TDVDTGRIQKITHTLFAATIDYKCVTTMRLEDEAHHYTYIKVNNPLH >gi|312979655|gb|ACRM01000010.1| GENE 108 86840 - 88597 1397 585 aa, chain + ## HITS:1 COG:SA1981 KEGG:ns NR:ns ## COG: SA1981 COG4264 # Protein_GI_number: 15927759 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Siderophore synthetase component # Organism: Staphylococcus aureus N315 # 4 584 5 585 585 609 54.0 1e-174 MLNEWKHADRNMQYRVLNALIKENIRTHSTTIFKENHYITIEFEQVLLNVHYKYESALSR YEFDGPIIYMNHQHKESVDSLEKLLDILVTDFHIDIPFHLKSELIHSRDSFIEVYKAFDT RHEYLQRHDKYINASERLNFFTWLEKLKKDNDIDDVLYSESLIFEGHPTHPLTKTKLPLS MKEVRTYSPEFEKIINLKVMLIHNEYVNVTTIFDHSQFILNEVIPEYIDELHTFMNDRER LLKDYKVILVHPWQYEHTIRNKYKEWLQDYILISTPFQVPSKATSSFRTMSLINHPYHVK LPVNVQATSAVRTVSPETTIDGPKLSQALHRELNQYTQLDVALEPYGLFAKTDSDDARQL ACIIREKPFTKDDGILLVTGALVNKNVVDNEITVDSYLKWINDDINQHTIRQFMRNYTRQ LVTPLLALIQDYGIALEAHMQNTLVHLGPKYQIQFIVRDLGGSRIDIKTLSQKLKHIEVE NKSLLADSIEEVIMKFQHAVVQNQLTELIFHFKKYDFIKEEELFNIIQEEIEVAINDTKP HADTLRKVLFGPTITVKALLKMRMKKKVKKYLNISLDNPIKREVN >gi|312979655|gb|ACRM01000010.1| GENE 109 88598 - 89659 900 353 aa, chain + ## HITS:1 COG:SA1980 KEGG:ns NR:ns ## COG: SA1980 COG3457 # Protein_GI_number: 15927758 # Func_class: E Amino acid transport and metabolism # Function: Predicted amino acid racemase # Organism: Staphylococcus aureus N315 # 1 345 1 346 356 357 54.0 2e-98 MSRIVINLSKIEYNGHVLKMLFDSKNIAIIPVIKSIAGDEHIIKRLMKVGFNYFAESRLE NIPQQFTKDCQFLLLRSPLKRQYEDLIKESYVSIQTEMVTIRQLNHIATEMSNQHQVILM VDWKDQREGVLPYHIVEYINEIKRMNNIKLLGLAFNFMCFKSKAPTLNDIDEINQFVHHV QYETGVSFEVISGGNSSMLPLLKQYDLGCINELRIGETLFRGVDTTTNENIPELFQNAIL LEAEIIEIKPRYTKTKESYLQAIVDVGYIDTVIEKIKPLNHRIEIMGASSDHLMIDLKEE INYKVGDCIPFSLEYEALSQLMYHQRMEKYYSEELAISQRINNLNQSKHTNNI >gi|312979655|gb|ACRM01000010.1| GENE 110 89852 - 90334 491 160 aa, chain + ## HITS:1 COG:SA1979 KEGG:ns NR:ns ## COG: SA1979 COG4594 # Protein_GI_number: 15927757 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-citrate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 158 1 154 327 194 67.0 5e-50 MKRTTIFGIISILLTLILITACGKVSNNGSKSSNHTSSSKDTIEIKHDLGTTKVSKGAKR IVALEFSFVDALAALNVKPVGIADDNKKNRMIKPLRDKIGNYTSVGTRKQPNLEEISKLK PDLIIADSNRHKGIYKELSKIAPTIELKSFDGDYNENIEV >gi|312979655|gb|ACRM01000010.1| GENE 111 90496 - 90840 443 114 aa, chain + ## HITS:1 COG:SA1979 KEGG:ns NR:ns ## COG: SA1979 COG4594 # Protein_GI_number: 15927757 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-citrate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 112 215 326 327 144 63.0 5e-35 MGQLLGELGFKEALNKDVTKGLSKYLQGPYLQLNSETLSEINPERMFIMTNGASSNESSY QELKKDPIWNKLDAVKNHKIDVVDRDTWARARGLISSEEMAKEIVEISKKDRNK >gi|312979655|gb|ACRM01000010.1| GENE 112 90853 - 91884 836 343 aa, chain + ## HITS:1 COG:SA1978 KEGG:ns NR:ns ## COG: SA1978 COG0609 # Protein_GI_number: 15927756 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 1 343 1 343 343 370 65.0 1e-102 MAIQKSNRLSTNKRSIKKRMTLTFSVSVCLLFIFAYLNLATGTLNIQTKDMYHYFFTSIE NKQTFIIQNVRMPRMIVGILVGGALALAGLLMQSITRNPLASPQIFGVNAGASFIIVLVT VLMPTMGNYATYLAFIGAFIGGLTVYLLSGSTKKITPVKLALAGMAVHLFFSSLTQGIIL LNEDSNSTVMFWLVGSLNGMKWKDVMIICPWILMGLIILIGFARQLTIMELGDTLAKSLG QKTEVIRIIIGLLVIIFAGTSVSIVGPIGFIGLIVPHIVKRYAPHNYFILIPLTFIVGAN LLLLSDTLSRLITYPYESPVGIVTSFIGAFYFLFITLRRVKRI >gi|312979655|gb|ACRM01000010.1| GENE 113 91881 - 92846 913 321 aa, chain + ## HITS:1 COG:SA1977 KEGG:ns NR:ns ## COG: SA1977 COG0609 # Protein_GI_number: 15927755 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 9 321 9 321 322 362 73.0 1e-100 MTHHSLAIRYALVVTILIISIFISLCVGATMYHPIKVINSLLIQDDFILNEYRIPRTLLG LIVGSSLAISGTIIQGVVKNPLASPDVIGMTKGASLAAIIIIMVFPNAPLIILPIGSFVG ALIISLILSFLISQFNIKGSTLALIGLAIGAICTAIVQFLLIRNPMDANNALIWLTGSLY GHTIENVYSILPWFIITIPIVIALSHQLDILNLGDSIAIALGTRIKRIKMILLILSVMLA GSSISIVGGISFLGLIAPHIARKIVGYRHVHVIMMSGLIGAILILFSDGLARGIHPPLDI PVGIVIAIVGVPYFLLLLRRI >gi|312979655|gb|ACRM01000010.1| GENE 114 93135 - 94451 1410 438 aa, chain + ## HITS:1 COG:SA1976 KEGG:ns NR:ns ## COG: SA1976 COG3314 # Protein_GI_number: 15927754 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 438 19 456 456 578 78.0 1e-165 MSIIGIILFLIPVPIVQDGEKQTTLPVAFLANWLKDLLGPAMSILIITIITLSTILTILF STILKNKVKPGGLIANAFQVGPVWMILRVLAVVFVWMTYFKIGSKVIYSEDTGGLVFNDL LPTLVAVFLFAALFLPLLMEYGLLEFLGPLFRPIMRPLFTLPGRSAVDNLASFIGDGTVG VLITSRQYEKGIYSKRESIVISTTFSVVSITFAIVIAQTIGLQQKFFVFYLTVIVSCLVA AIIMPRIWPLNQIPDDFTKEVSESTRLEKLPEGKTALAHGFDEATIVGLKAPGVKEFFKT GIKTVIDMWFVILPVVMSIGTIATIIANYTPVFEIIGKPFIPILQLLQIPEAAKASETLL IGFADMFLPSILIATVHSELTRFVIGALSISQLIYLSEVGGVILGSKIPVSLGKLFMIFL IRTAITLPIIALMAHLLL >gi|312979655|gb|ACRM01000010.1| GENE 115 94511 - 94825 458 104 aa, chain - ## HITS:1 COG:SA0160 KEGG:ns NR:ns ## COG: SA0160 COG2329 # Protein_GI_number: 15925869 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Staphylococcus aureus N315 # 1 99 1 102 108 70 38.0 9e-13 MFVVTNRITVKKGFAEKMAPRFTKGGKIEQLEGFRKIEVWQIDNTNDTENMYVNTWWDGE ENFKAWTQSDAFKEAHKNTGKSSTEDSPVVTSEIVKANVLSTLE >gi|312979655|gb|ACRM01000010.1| GENE 116 95002 - 95520 383 172 aa, chain + ## HITS:1 COG:SA1975 KEGG:ns NR:ns ## COG: SA1975 COG1988 # Protein_GI_number: 15927752 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Staphylococcus aureus N315 # 1 163 1 163 171 192 61.0 2e-49 MTGKTHVAAGLLVGAITVDHYHTDLFSTVTVICLAISGSLLPDICHTRSKIGRQFKILSL LVSTIFGHRTFTHSLLFLGMIGFLLILIQTPTYYLVTIIGAMASHVILDMLTPRGVKLLY PIPLSIKFPFTFKTGGFLDASLSTAFSIGAIYIIFQEFINEILKYVSHSLSG >gi|312979655|gb|ACRM01000010.1| GENE 117 95626 - 96813 1300 395 aa, chain + ## HITS:1 COG:SA1974 KEGG:ns NR:ns ## COG: SA1974 COG4284 # Protein_GI_number: 15927751 # Func_class: G Carbohydrate transport and metabolism # Function: UDP-glucose pyrophosphorylase # Organism: Staphylococcus aureus N315 # 1 395 1 395 395 550 71.0 1e-156 MLDQSKLEKYNQEHLIEYEKMMSSNEKEQLDEKVNSLDLEFIQELYQSLYVNRKTITDVT AVSEVDYKIKEAFTEQDREYYEHKGIEAIRNGEFAVVLMAGGQGTRLGYKGPKGSFEIEG ISLFELQARQLLHLKNETGHCINWYIMTSDINHEETLRYFENHDYFGYNPERIHFFKQDN IVALSENGRLIFNEKGYIMETPNGNGGIFKSLEHYGYLDKMEKDGVKFIFLNNIDNVLVK VLDPVFVGFTVVNDKDITSKSIQPKKGESVGRLVSKDNKDTVLEYSELDENVANTFDNAN IGIHAFKLSFINQVVNNDLPYHLAIKKLKQLDDDFGLIEKTSLKFELFYFDIFRYANSFI TLQVPRKEEFSPLKNKEGKDSVETATDDLKRMNVI >gi|312979655|gb|ACRM01000010.1| GENE 118 96830 - 97513 697 227 aa, chain + ## HITS:1 COG:SA1973 KEGG:ns NR:ns ## COG: SA1973 COG1272 # Protein_GI_number: 15927750 # Func_class: R General function prediction only # Function: Predicted membrane protein, hemolysin III homolog # Organism: Staphylococcus aureus N315 # 1 227 2 228 228 295 80.0 4e-80 MSKSSQHTKDNVIESFKDIIPLSFGEEIGNATSHGVAALMTLFLLPYVAVHSYNEYGTLS SISVSIFVISIFMMFISSTVYHSMKNNTSHKYILRIIDHSMIYVAISGTYTPVLLTVVGG WLGWLVFLLLWGTTIWGILYKSISTHVNPKLSLIVYLVMGWVGIIFLPVIIIRTSWLFIL FIVLGGLSYTSGAWFYAQKNRPYFHMIWHIFIVIASLFHFIGIVYFM >gi|312979655|gb|ACRM01000010.1| GENE 119 97701 - 99041 1115 446 aa, chain + ## HITS:1 COG:SA1972 KEGG:ns NR:ns ## COG: SA1972 COG0477 # Protein_GI_number: 15927749 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 446 1 446 447 482 68.0 1e-136 MKLKSIGIVVTLVLTMFMAAIESSIISLALPTIRKDLNAGTAVPLVFTVYFIALVVANPI VGELLTRFKILYITVVGILLFGIGSFMSGMSETFTMLIISRVIQGLGAGVMMSLTQIVPK LAFEIPLRYKIMGIVGSVWGISSILGPLLGGGILEVATWHWLFYINIPIALIAIVLAFLT FHFPEEAEVQHIHFDAKGLSLFYIFIGLLMFSLLNKTGVTFNIIAFILAIVILFVLFKYE NKKNMPFLPISEFNKSISLVFITDLLIAICLMGYNLYIPVYLQDYLKLSPIQSGLVIFPL SVAWLALNFNLAKVESKFSRKKLYIGAFISLILSNMILVFGLHIPLIIAGAVILAGLSFG FVYTKDSVIVQEETSPKYMKKMMSFYALTKNLGSSIGSTLMGSLYALQFGLLGGNFYNIL TVITIVALILILMWVFLFKENKESIK >gi|312979655|gb|ACRM01000010.1| GENE 120 99119 - 99586 391 155 aa, chain + ## HITS:1 COG:no KEGG:SH0873 NR:ns ## KEGG: SH0873 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 155 1 155 155 170 76.0 1e-41 MKFSNQKFNGIFPALLILIIFILSGCIFLIFLGFGLFGLSRILIFLKLGFFTYNRDLFSN LVYYGSYIVFGYFLLFAIEHLMDYFRKQLPNNPYFNGTLFHLISYVITTILFYFVIHIHY VYIKIEFWVIALIIGILYLCKMIFYPDSEDLNDKK >gi|312979655|gb|ACRM01000010.1| GENE 121 99678 - 100742 1391 354 aa, chain + ## HITS:1 COG:SA1969 KEGG:ns NR:ns ## COG: SA1969 COG0489 # Protein_GI_number: 15927746 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Staphylococcus aureus N315 # 1 354 1 354 354 571 86.0 1e-163 MLTVEQVEKIVGNLKDPIINVPLKETKGIVEVKIKEEIQHVSVKVAMAQLGGQPQLDLQM SVVKALKENGANTVGIRFEELPAEVVEKYTGKEKEKPKTIEGLLSQNNPVEFIAIASGKG GVGKSTIAVNLAVALAREGKRVGLIDADIYGFSVPDMMGIDEKPGVQGKEIIPVERHGVK VISMAFFVEENAPVIWRGPMLGKMLTNFFVEVKWGELDYLLLDLPPGTGDVALDVHSMLP SSKEIIVTTPHPTAAFVAARAGAMAKHTEHSILGVIENMSYFESKETGKKEYVFGKGGGR KLADELNTQLLGELPLEQPSWNPNDFSPSIYQEEDRLGKIYKIIAQKVIAATIK Prediction of potential genes in microbial genomes Time: Sun May 29 09:18:13 2011 Seq name: gi|312979654|gb|ACRM01000011.1| Staphylococcus hominis subsp. hominis C80 cont1.11, whole genome shotgun sequence Length of sequence - 1875 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 175 - 1716 99.0 # AB177642 [D:1..1542] # 16S ribosomal RNA # Staphylococcus sp. H292 # Bacteria; Firmicutes; Bacillales; Staphylococcus. Prediction of potential genes in microbial genomes Time: Sun May 29 09:18:15 2011 Seq name: gi|312979653|gb|ACRM01000012.1| Staphylococcus hominis subsp. hominis C80 cont1.12, whole genome shotgun sequence Length of sequence - 4151 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + SSU_RRNA 2 - 332 100.0 # X66101 [D:1..1544] # 16S ribosomal RNA # Staphylococcus hominis # Bacteria; Firmicutes; Bacillales; Staphylococcus. + LSU_RRNA 631 - 3463 99.0 # AP006716 [D:881725..884557] # 23S RIBOSOMAL RNA # Staphylococcus haemolyticus JCSC1435 # Bacteria; Firmicutes; Bacillales; Staphylococcus. + 5S_RRNA 3620 - 3734 99.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. - 5S_RRNA 3978 - 4151 91.0 # AE017194 [D:4654188..4655695] # 5S ribosomal RNA # Bacillus cereus ATCC 10987 # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group. Prediction of potential genes in microbial genomes Time: Sun May 29 09:18:42 2011 Seq name: gi|312979652|gb|ACRM01000013.1| Staphylococcus hominis subsp. hominis C80 cont1.13, whole genome shotgun sequence Length of sequence - 81277 bp Number of predicted genes - 87, with homology - 86 Number of transcription units - 39, operones - 21 average op.length - 3.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 1 - 142 95.0 # AF142677 [R:48033..48709] # 5S ribosomal RNA # Bacillus megaterium # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. + 5S_RRNA 316 - 430 99.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. + TRNA 442 - 516 88.3 # Asn GTT 0 0 + TRNA 518 - 589 68.6 # Glu TTC 0 0 + TRNA 597 - 672 95.7 # Val TAC 0 0 + 5S_RRNA 603 - 654 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 683 - 766 77.6 # Tyr GTA 0 0 + TRNA 773 - 847 76.6 # Gln TTG 0 0 + TRNA 851 - 923 89.9 # Lys TTT 0 0 + Prom 899 - 958 30.7 1 1 Op 1 7/0.000 + CDS 1013 - 1882 858 ## COG1624 Uncharacterized conserved protein 2 1 Op 2 6/0.000 + CDS 1884 - 2816 948 ## COG4856 Uncharacterized protein conserved in bacteria 3 1 Op 3 5/0.000 + CDS 2845 - 4197 1901 ## COG1109 Phosphomannomutase + Term 4224 - 4281 1.1 + Prom 4650 - 4709 5.5 4 1 Op 4 1/0.900 + CDS 4737 - 6542 2529 ## COG0449 Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains + Term 6544 - 6595 10.3 + Prom 6556 - 6615 7.0 5 2 Op 1 1/0.900 + CDS 6641 - 7423 227 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 6 2 Op 2 . + CDS 7487 - 8347 928 ## COG0561 Predicted hydrolases of the HAD superfamily + Term 8353 - 8397 8.4 - Term 8341 - 8385 5.4 7 3 Tu 1 . - CDS 8405 - 9466 1234 ## SH0886 hypothetical protein - Prom 9490 - 9549 6.0 + Prom 9510 - 9569 6.2 8 4 Tu 1 . + CDS 9598 - 10329 983 ## COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases + Term 10330 - 10392 6.1 - Term 10327 - 10371 -1.0 9 5 Op 1 2/0.000 - CDS 10414 - 11367 1067 ## COG1230 Co/Zn/Cd efflux system component 10 5 Op 2 . - CDS 11371 - 11697 543 ## COG0640 Predicted transcriptional regulators - Prom 11736 - 11795 8.3 + Prom 11690 - 11749 8.1 11 6 Tu 1 . + CDS 11853 - 12509 1118 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 12551 - 12600 11.5 + Prom 12590 - 12649 13.6 12 7 Tu 1 . + CDS 12851 - 13783 923 ## COG1482 Phosphomannose isomerase + Term 13811 - 13849 -0.7 + Prom 14102 - 14161 11.8 13 8 Tu 1 . + CDS 14181 - 15554 1653 ## SH0893 hypothetical protein + Term 15593 - 15655 14.1 + Prom 15595 - 15654 6.6 14 9 Op 1 . + CDS 15705 - 16100 455 ## COG3011 Uncharacterized protein conserved in bacteria + Prom 16102 - 16161 9.5 15 9 Op 2 . + CDS 16303 - 16743 650 ## COG0783 DNA-binding ferritin-like protein (oxidative damage protectant) + Term 16754 - 16816 17.1 - Term 16748 - 16796 4.3 16 10 Tu 1 . - CDS 16829 - 17539 1009 ## COG0813 Purine-nucleoside phosphorylase - Prom 17701 - 17760 6.2 + Prom 17562 - 17621 9.6 17 11 Op 1 7/0.000 + CDS 17686 - 18348 989 ## COG0274 Deoxyribose-phosphate aldolase 18 11 Op 2 4/0.000 + CDS 18405 - 19706 1625 ## COG0213 Thymidine phosphorylase 19 11 Op 3 . + CDS 19718 - 20902 1528 ## COG1015 Phosphopentomutase 20 11 Op 4 . + CDS 20905 - 21255 473 ## COG4270 Predicted membrane protein + Term 21262 - 21326 26.3 - Term 21250 - 21314 26.3 21 12 Tu 1 . - CDS 21322 - 21792 690 ## COG1854 LuxS protein involved in autoinducer AI2 synthesis - Prom 21882 - 21941 8.3 + Prom 21900 - 21959 11.0 22 13 Op 1 . + CDS 22052 - 23227 1528 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase 23 13 Op 2 . + CDS 23232 - 24428 1371 ## SH0903 hypothetical protein + Term 24466 - 24517 -0.7 + Prom 24449 - 24508 6.2 24 14 Tu 1 . + CDS 24533 - 25198 945 ## SERP1738 hypothetical protein + Term 25205 - 25253 13.1 - Term 25193 - 25240 9.1 25 15 Tu 1 . - CDS 25268 - 26068 1053 ## COG5146 Pantothenate kinase, acetyl-CoA regulated - Prom 26137 - 26196 8.5 + Prom 26061 - 26120 11.2 26 16 Tu 1 1/0.900 + CDS 26249 - 27109 868 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 27113 - 27172 5.8 27 17 Op 1 5/0.000 + CDS 27219 - 27749 828 ## COG3343 DNA-directed RNA polymerase, delta subunit + Term 27769 - 27814 0.1 + Prom 27843 - 27902 8.1 28 17 Op 2 . + CDS 27947 - 29554 2026 ## COG0504 CTP synthase (UTP-ammonia lyase) + Term 29567 - 29617 8.2 - Term 29554 - 29605 12.2 29 18 Tu 1 . - CDS 29672 - 30193 655 ## SH0909 hypothetical protein - Prom 30288 - 30347 7.6 + Prom 30259 - 30318 8.5 30 19 Tu 1 . + CDS 30355 - 31212 1321 ## COG0191 Fructose/tagatose bisphosphate aldolase + Term 31246 - 31287 8.1 + Prom 31509 - 31568 12.3 31 20 Op 1 1/0.900 + CDS 31609 - 32880 1729 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 32 20 Op 2 1/0.900 + CDS 32956 - 33291 349 ## COG1733 Predicted transcriptional regulators + Term 33292 - 33349 14.6 + Prom 33316 - 33375 5.4 33 21 Tu 1 . + CDS 33401 - 34828 1945 ## COG1012 NAD-dependent aldehyde dehydrogenases + Term 34854 - 34909 11.2 + Prom 34877 - 34936 10.3 34 22 Op 1 9/0.000 + CDS 35068 - 36384 1579 ## COG1158 Transcription termination factor + Term 36390 - 36432 0.0 + Prom 36397 - 36456 4.6 35 22 Op 2 3/0.000 + CDS 36500 - 36757 455 ## PROTEIN SUPPORTED gi|228474890|ref|ZP_04059619.1| ribosomal protein L31 + Prom 36775 - 36834 9.8 36 23 Op 1 3/0.000 + CDS 36932 - 37531 641 ## COG1435 Thymidine kinase 37 23 Op 2 32/0.000 + CDS 37531 - 38607 1541 ## COG0216 Protein chain release factor A 38 23 Op 3 10/0.000 + CDS 38594 - 39430 363 ## PROTEIN SUPPORTED gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase + Term 39435 - 39484 2.1 + Prom 39432 - 39491 3.5 39 23 Op 4 3/0.000 + CDS 39515 - 40555 1075 ## COG0009 Putative translation factor (SUA5) 40 23 Op 5 1/0.900 + CDS 40552 - 40968 437 ## COG0394 Protein-tyrosine-phosphatase + Term 41018 - 41067 3.4 + Prom 40970 - 41029 6.4 41 24 Op 1 3/0.000 + CDS 41078 - 41602 472 ## COG4475 Uncharacterized protein conserved in bacteria 42 24 Op 2 5/0.000 + CDS 41627 - 42865 1513 ## COG0112 Glycine/serine hydroxymethyltransferase 43 24 Op 3 2/0.000 + CDS 42890 - 43519 1016 ## COG0035 Uracil phosphoribosyltransferase 44 24 Op 4 . + CDS 43539 - 44684 1086 ## COG0381 UDP-N-acetylglucosamine 2-epimerase + Prom 44721 - 44780 5.4 45 25 Op 1 . + CDS 44892 - 45179 240 ## SH0925 hypothetical protein 46 25 Op 2 40/0.000 + CDS 45208 - 45933 741 ## COG0356 F0F1-type ATP synthase, subunit a 47 25 Op 3 37/0.000 + CDS 45966 - 46178 468 ## COG0636 F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K + Term 46190 - 46226 2.6 + Prom 46185 - 46244 2.9 48 25 Op 4 38/0.000 + CDS 46265 - 46795 822 ## COG0711 F0F1-type ATP synthase, subunit b 49 25 Op 5 41/0.000 + CDS 46795 - 47334 677 ## COG0712 F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) 50 25 Op 6 42/0.000 + CDS 47353 - 48861 2069 ## COG0056 F0F1-type ATP synthase, alpha subunit 51 25 Op 7 42/0.000 + CDS 48893 - 49759 1056 ## COG0224 F0F1-type ATP synthase, gamma subunit 52 25 Op 8 42/0.000 + CDS 49781 - 51193 2183 ## COG0055 F0F1-type ATP synthase, beta subunit 53 25 Op 9 2/0.000 + CDS 51215 - 51616 586 ## COG0355 F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) + Term 51629 - 51675 5.2 + Prom 51769 - 51828 10.9 54 26 Op 1 2/0.000 + CDS 51925 - 52155 208 ## COG4836 Predicted membrane protein + Prom 52166 - 52225 6.7 55 26 Op 2 1/0.900 + CDS 52262 - 53527 1750 ## COG0766 UDP-N-acetylglucosamine enolpyruvyl transferase 56 26 Op 3 . + CDS 53555 - 53992 587 ## COG0764 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases + Term 53995 - 54058 18.1 - Term 53987 - 54038 11.2 57 27 Tu 1 . - CDS 54042 - 54482 343 ## SH0937 hypothetical protein - Prom 54608 - 54667 9.3 + Prom 54586 - 54645 7.1 58 28 Tu 1 . + CDS 54676 - 55071 365 ## COG0629 Single-stranded DNA-binding protein + Term 55145 - 55192 4.2 + Prom 55315 - 55374 11.5 59 29 Tu 1 . + CDS 55476 - 56240 988 ## SH0939 hypothetical protein + Term 56263 - 56304 8.1 + Prom 56548 - 56607 10.5 60 30 Op 1 1/0.900 + CDS 56631 - 57320 892 ## COG0819 Putative transcription activator 61 30 Op 2 12/0.000 + CDS 57313 - 58134 1076 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase 62 30 Op 3 6/0.000 + CDS 58127 - 58915 1010 ## COG2145 Hydroxyethylthiazole kinase, sugar kinase family 63 30 Op 4 1/0.900 + CDS 58918 - 59556 751 ## COG0352 Thiamine monophosphate synthase + Prom 59558 - 59617 7.3 64 30 Op 5 . + CDS 59645 - 60514 1001 ## COG0706 Preprotein translocase subunit YidC + Term 60529 - 60588 14.1 - Term 60524 - 60566 8.1 65 31 Op 1 1/0.900 - CDS 60572 - 61219 632 ## COG1418 Predicted HD superfamily hydrolase 66 31 Op 2 . - CDS 61254 - 62738 1344 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes - Prom 62797 - 62856 7.4 + Prom 62794 - 62853 9.1 67 32 Op 1 . + CDS 62904 - 63197 253 ## COG1937 Uncharacterized protein conserved in bacteria 68 32 Op 2 . + CDS 63213 - 63422 301 ## SAR2174 hypothetical protein + Prom 63425 - 63484 5.1 69 33 Tu 1 . + CDS 63535 - 63672 119 ## + Term 63691 - 63726 3.1 - Term 63677 - 63716 4.3 70 34 Tu 1 . - CDS 63833 - 65017 1231 ## COG0772 Bacterial cell division membrane protein - Prom 65123 - 65182 12.1 + Prom 65254 - 65313 9.7 71 35 Op 1 6/0.000 + CDS 65391 - 66461 1411 ## COG1181 D-alanine-D-alanine ligase and related ATP-grasp enzymes 72 35 Op 2 2/0.000 + CDS 66477 - 67832 1568 ## COG0770 UDP-N-acetylmuramyl pentapeptide synthase + Term 67850 - 67896 5.1 + Prom 67968 - 68027 6.2 73 35 Op 3 . + CDS 68064 - 69575 1906 ## COG0513 Superfamily II DNA and RNA helicases + Term 69607 - 69651 12.1 + Prom 69740 - 69799 6.6 74 36 Op 1 . + CDS 69824 - 70303 247 ## SH0957 hypothetical protein 75 36 Op 2 7/0.000 + CDS 70293 - 71795 1154 ## COG3428 Predicted membrane protein 76 36 Op 3 1/0.900 + CDS 71788 - 72267 248 ## COG3402 Uncharacterized conserved protein 77 36 Op 4 5/0.000 + CDS 72292 - 72645 420 ## COG0736 Phosphopantetheinyl transferase (holo-ACP synthase) 78 36 Op 5 . + CDS 72688 - 73833 1203 ## COG0787 Alanine racemase + Prom 73835 - 73894 6.6 79 37 Op 1 . + CDS 73919 - 74089 203 ## SH0962 hypothetical protein 80 37 Op 2 1/0.900 + CDS 74086 - 74448 404 ## COG2337 Growth inhibitor + Term 74648 - 74702 10.2 + Prom 74667 - 74726 8.0 81 38 Op 1 9/0.000 + CDS 74820 - 75821 1245 ## COG2208 Serine phosphatase RsbU, regulator of sigma subunit + Prom 75825 - 75884 9.1 82 38 Op 2 8/0.000 + CDS 75907 - 76233 507 ## COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 83 38 Op 3 6/0.000 + CDS 76235 - 76714 595 ## COG2172 Anti-sigma regulatory factor (Ser/Thr protein kinase) 84 38 Op 4 1/0.900 + CDS 76689 - 77459 885 ## COG1191 DNA-directed RNA polymerase specialized sigma subunit + Prom 77499 - 77558 7.3 85 39 Op 1 6/0.000 + CDS 77586 - 79733 952 ## PROTEIN SUPPORTED gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein + Prom 77499 - 77558 7.3 86 39 Op 2 6/0.000 + CDS 77586 - 79733 197 ## PROTEIN SUPPORTED gi|227411819|ref|ZP_03895019.1| SSU ribosomal protein S1P 87 39 Op 3 . + CDS 79738 - 80178 199 ## COG3091 Uncharacterized protein conserved in bacteria + Term 80223 - 80271 3.3 + TRNA 80450 - 80535 64.7 # Leu GAG 0 0 + TRNA 80560 - 80633 75.7 # Gly TCC 0 0 + SSU_RRNA 80759 - 81277 99.0 # EU373358 [D:1..1518] # 16S ribosomal RNA # Staphylococcus sp. HNL18 # Bacteria; Firmicutes; Bacillales; Staphylococcus. Predicted protein(s) >gi|312979652|gb|ACRM01000013.1| GENE 1 1013 - 1882 858 289 aa, chain + ## HITS:1 COG:SA1967 KEGG:ns NR:ns ## COG: SA1967 COG1624 # Protein_GI_number: 15927744 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 22 289 1 269 269 453 90.0 1e-127 MTVTPFIGIIMSMKVIDGGEIMDFSNFFNNLSTLKIITSILDILIVWYVLYLLITVFKGT KAIQLLKGILFIVIGQQVSKLLNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRG SLFKRYTNTYSHDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGISMNSAIS QELLINVFIPNTPLHDGAMIIQNTKIASAACYLPLSDSNKISKSLGTRHRAAVGISEVSD SFTVVVSEETGSISVTFDGKLRRDVSDEVFEELLAEHWFGARAQKKGVK >gi|312979652|gb|ACRM01000013.1| GENE 2 1884 - 2816 948 310 aa, chain + ## HITS:1 COG:SA1966 KEGG:ns NR:ns ## COG: SA1966 COG4856 # Protein_GI_number: 15927743 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 310 1 310 310 302 60.0 6e-82 MLESKWGLRFFALILAIFFYLSVNNVFGNIFNNDNLSQNSSKTIEDVPVEILYNTKNLHV TKSPDTVDVTISGPQSKLLKIESSDDIKVTVNLSNAKSGNYKEDYIVKGLSNDISYNVKP KHAYITLEDKDTKTMHVQPDIAQNNINSNYKVSEAFLNKNTVQVTGGKKQLDKIAYLKAT FKNATNISEDTTDVAEITAFDKQLNKLNVQIKPNNVKMSVKLEPYSKKVKIKTVKKGSLP DDESLDNIKLNENEVEIYGNKDDLKDINDIEADVNLDDITESTNKTLELKIPKQVKKSEF NEVTAHVNLK >gi|312979652|gb|ACRM01000013.1| GENE 3 2845 - 4197 1901 450 aa, chain + ## HITS:1 COG:SA1965 KEGG:ns NR:ns ## COG: SA1965 COG1109 # Protein_GI_number: 15927742 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannomutase # Organism: Staphylococcus aureus N315 # 1 450 1 450 451 763 86.0 0 MGKYFGTDGVRGVANKELTPELAFKLGRYGGYVLAHNEGEKHPRVLVGRDTRVSGEMLES ALIAGLASIGAEVMRLGVISTPGVAYLTREMGAQLGIMISASHNPVADNGIKFFGADGFK LSDKQEEEIEQLLDQEQPDLPRPAGKDILHFSDYYEGAQKYLSYLKSTIDINLDGLKITL DGANGSTSSLAPFLFGDLEATTVTIGCNPDGYNINDECGSTHPEHLAEKVVETESDFGLA FDGDGDRLIAVDEKGNIIDGDQIMFIIGQDMHKNHELNNNMIVSTVMSNLGFYKALETEG IQSNKTKVGDRYVVEEMRRGHYNLGGEQSGHIVMMDYNTTGDGLLTGVQLAAIIKSSGKT LSELAAQMKKYPQSLINVKVTDKHHVSENEDVKAVMDEVENEMNGEGRILVRPSGTEPLV RVMVEAATNEDAERYAQTIANKVKEKMGLN >gi|312979652|gb|ACRM01000013.1| GENE 4 4737 - 6542 2529 601 aa, chain + ## HITS:1 COG:SA1959 KEGG:ns NR:ns ## COG: SA1959 COG0449 # Protein_GI_number: 15927735 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains # Organism: Staphylococcus aureus N315 # 1 601 1 601 601 976 86.0 0 MCGIVGYIGFDNAKELLLSGLEKLEYRGYDSAGIAVVNDEGTTVFKEKGRIAELRKVADS NDIDGHIGIGHTRWATHGVPSTVNSHPHQSNNGRFTLVHNGVIENYEELKSEYLSDVTFK SETDTEVIVQLVEYFSNKGLETEDAFTKAVSLLDGSYALGMLDSEDEDTIYVAKNKSPLL VGIGDDFNVIASDALAMIKVTNQYKEIHDHEIVIVKKESVTIKDKDGNIQHRPTYTAQID ASDAEKGIYDHYMLKEINEQPAVMRRIIQEYEDENGDLNIDSEIIKDVSNADRIYIIAAG TSYHAGLVGKEYLEKLSGVPTEVHVASEFVYNMPLLSEKPLFIYISQSGETADSRAVLVE TNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQVVAKA HGRDNGIDLLRELAKVTTAIETIVDDAPVMEKITKEFLETTRNAFFIGRAMDYNVSLEGA LKLKEISYIQAEGFAGGELKHGTIALIEDDTPVIALATQENVNLSIRGNVKEVVARGAKP CIISMEGLEKDGDTYVIPHVHELLTPLVSVVALQLIAYYAALHRGLDVDKPRNLAKSVTV E >gi|312979652|gb|ACRM01000013.1| GENE 5 6641 - 7423 227 260 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 241 1 240 245 92 28 9e-18 MINLKHIYKQKHGKTILNDLNWHIETGDNWILYGVNGAGKTTLLNIMNAYESVSQVEIEM FEMVPGKKGYSAENVRQHIGFVSHSLLEKFQDGEKVIDVVLSGIFKSIGLYKEYSDEHIK EAEKLLNLVGMLSYKDQYLGYLSTGQKQKVMIARALIHQPDVLILDEPASGLDFLAREQL LYLLENLNKTYAHLTMIYVTHVIEEIIPLFSKIFLLKEGSCFDKGITKDILTDSIMSKFF NNQIEVIQYRNRYHLYIKYN >gi|312979652|gb|ACRM01000013.1| GENE 6 7487 - 8347 928 286 aa, chain + ## HITS:1 COG:SA1957 KEGG:ns NR:ns ## COG: SA1957 COG0561 # Protein_GI_number: 15927733 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 4 285 2 283 285 381 68.0 1e-106 MIFENIKAIFLDMDGTLLHEDNKATVKTKEVIDQLREKNYKVFLATGRSYSEIHNLVPKG FKVDGVISSNGTRGDIEDKLLFKHSLTIDSVKKIVQLAQQQHIYYEVFPFEGDRISLIED QSWMEDMIDSEHPQNEVSESEWKSRRDAMNGKINWRKDIPNDAYSKIYLFNKKLNKIKTF RDELIQNKVLLNISVSNSSRFNAETMAYQVDKGTGIKEMIDHFDIKQEETLVIGDSDNDR AMFEFGGYTVSMKNARPEIQSITDHTTQYTNEEDGAALYLEHHLLN >gi|312979652|gb|ACRM01000013.1| GENE 7 8405 - 9466 1234 353 aa, chain - ## HITS:1 COG:no KEGG:SH0886 NR:ns ## KEGG: SH0886 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 352 1 352 372 301 63.0 4e-80 MFKFHSLAFKNAKSQLIKTILFSLVSFIIVFVAFVIARTFFIQNFMQMQLAAQFQQSSGA SLVMIILVLVLGLLFFILAGYQLLAGAFNIMAKAIEKEAVQFSDLFFAFKKGKYVKSLLL ALITIILYAVLYLITLGLNFLFNKALTPLFTSIQQSVSTSDHAIGILLTVQIILIIIMGF ILSIVYWFFFILMINYTVSFARKNDLSAIGHFKDGFKGIKNGRKTWFKFFLAILLINLLI IIITQPLGTVLTVLTGNMSQNVAQVILIIAQTLIIIVRLILYFVIIMGIVQYFLRRGENV KRPVKEKKKSKRKEKKEINHEKEALKNDPSSFNDTKNHVKEDLGHQKNLNNDK >gi|312979652|gb|ACRM01000013.1| GENE 8 9598 - 10329 983 243 aa, chain + ## HITS:1 COG:TM1876 KEGG:ns NR:ns ## COG: TM1876 COG0639 # Protein_GI_number: 15644619 # Func_class: T Signal transduction mechanisms # Function: Diadenosine tetraphosphatase and related serine/threonine protein phosphatases # Organism: Thermotoga maritima # 1 219 1 214 254 75 28.0 7e-14 MKFAILTDVHGNFDALQTVLDDIDNREDIDQIFNLGDNIGIGHETNKVLDMIFDRDDMEI IAGNHDEAIMSIVNGTPYPEDLKNKFYEHHQWIESRMDEDYYDVLNTLPRYLEKTICGKK CLFIHYEIENQRLEEGIDKQPFEPIVDNQKEEIVKLFEDKDADFIAFGHNHQLHLYDDNN KTYFNPGSVGLNNGKYAVYGIVTINENEFSVERVKLPYDNEEFLQGFDEKHVPGKQFIFD YFI >gi|312979652|gb|ACRM01000013.1| GENE 9 10414 - 11367 1067 317 aa, chain - ## HITS:1 COG:SA1948 KEGG:ns NR:ns ## COG: SA1948 COG1230 # Protein_GI_number: 15927720 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Staphylococcus aureus N315 # 15 309 14 308 325 382 73.0 1e-106 MSNHTHHHNHTHNHVHTNNKKVLTISFIIIGLFMIVEILGGFIANSLALLSDGLHMFSDT VSLGVALIAFIYAEKNATSTKTFGYKRFEVLAALFNGITLLIISGVIIIEAIRRFFNPIK VQSTEMFIISVIGLIVNIIVAIIMFKSGDTSHNLNMRGAFIHVLGDLLGSLGAIIASILI YVFNFTIADPIASILVSIIILKSAIGISRSSLNILMEGTPSDVNLDKIISTIINHNEIYN VHDYHVWTISNDMNALSCHAVVSETMSVQDCEGLLKKIEHELLHLNIQHMTIQLETAQHD HDTSVLCSGLHKEHAHH >gi|312979652|gb|ACRM01000013.1| GENE 10 11371 - 11697 543 108 aa, chain - ## HITS:1 COG:SA1947 KEGG:ns NR:ns ## COG: SA1947 COG0640 # Protein_GI_number: 15927719 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 12 106 8 102 106 103 66.0 6e-23 MSNTNKDRDIFIDEYMLNRLTETFKALSDYNRLRILELLYKGEASVGHITHTLKLTQSNV SHQLKSLKQEGLVKSSRHGQSMIYSIDDQHVSTLLKQAIQHAHHQRGE >gi|312979652|gb|ACRM01000013.1| GENE 11 11853 - 12509 1118 218 aa, chain + ## HITS:1 COG:SA1946 KEGG:ns NR:ns ## COG: SA1946 COG0702 # Protein_GI_number: 15927718 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 218 1 217 221 284 70.0 9e-77 MSILVIGANGGVGSKLVNQLKEDQVDFTAGVRKEEQESALKDQGVNAILIDVEKDSIDDL TEKFKGFDKVIFSVGSGGSTGADKTIIVDLDGAVKTIEASKKANVKHYVMVSTYDSRREA FDASGDLKPYTIAKHYADNHLRNSGLTYTIVHPGGLEDKSGTGEIKADLYFDEGSTIPRE DVASVLKHVATSENKFENKEFQILSGHQSIQEALSRFE >gi|312979652|gb|ACRM01000013.1| GENE 12 12851 - 13783 923 310 aa, chain + ## HITS:1 COG:SA1945 KEGG:ns NR:ns ## COG: SA1945 COG1482 # Protein_GI_number: 15927717 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphomannose isomerase # Organism: Staphylococcus aureus N315 # 1 310 1 312 312 460 68.0 1e-129 MPLFLKPIFFEKIWGGNKLNQFNYDIPSEQTGECWGISAHPNGKNMIENGQYAGQTLDQV WNEHRELFGDFPSKDFPLLCKIVDARHPLSIHVHPDDSYAYEFENGQYGKSECWYIIDAE EDAEIILGTSADSKETFENKIKEEAVLDVVERLKVKPGEFYFIPAGMLHSIGSGVLVYET MQSSDISYRVYDYERNRTDGSSLEVKKALDVIQFTANAPAIVPETTIVENHKRSQIVSND FFTMVKWEISGTLNYMKPREFCLISVLEGHGQVITDGEIFKLEKGSNFILTSEDLDSVFE GEFTLIISYI >gi|312979652|gb|ACRM01000013.1| GENE 13 14181 - 15554 1653 457 aa, chain + ## HITS:1 COG:no KEGG:SH0893 NR:ns ## KEGG: SH0893 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 456 1 457 457 800 88.0 0 MAEEVNYFWLNCGYTRWNHNEPLVGQITLFESGAQFNPTQGFRAFKKAKIGDQVIFYQVQ TDTGLLGIGEIISVQTGAQNKIRVEFKFNEELKPLTTDYLKRSEVLDYRMNNMRETLINQ LTKEEFQLIVELGKGNIQLPRYFFLSETEKFEPDTHYTIFTHTYNGIKRNGYHFYNQLEV GDNLIFYDKNSNQSVVGIGEVSRHIHEKSPIPGRTNSTAIEIYYEKNITPVTLGALNKHP KLKNLYFLQENAKQAIASMSQAQYDAIIEMSENDGIRTPFETIKKPGFNTDHDETIKPFI LLVVDKREEGLKAANNLLQKTNANPVITSGHPDFSEDMLYGRYLPNETGALYYREGFITQ LMPKNDKSYLVIDNFNRLDPDIFQTYINVLEGYEVTLPRYNKDGNMITWSREKDSFYHFN PNWHIIGVTYEKLEDIKNKYSQQFLKYTRIVKVNHDA >gi|312979652|gb|ACRM01000013.1| GENE 14 15705 - 16100 455 131 aa, chain + ## HITS:1 COG:SA1942 KEGG:ns NR:ns ## COG: SA1942 COG3011 # Protein_GI_number: 15927714 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 129 1 130 137 197 68.0 3e-51 MPIVYYDGNCVYCYNYCIWLIQHGLPKNYEFATLKGKAGQHLFEQHPEAKNKNSVILQEG DHLYYETTAVAKLITTLSSEKWLGILLRVTPLPIRNLGYRLFANNRDKMWKTHWHKPNAY EKSFFIDDDRQ >gi|312979652|gb|ACRM01000013.1| GENE 15 16303 - 16743 650 146 aa, chain + ## HITS:1 COG:SA1941 KEGG:ns NR:ns ## COG: SA1941 COG0783 # Protein_GI_number: 15927713 # Func_class: P Inorganic ion transport and metabolism # Function: DNA-binding ferritin-like protein (oxidative damage protectant) # Organism: Staphylococcus aureus N315 # 3 145 4 146 147 229 83.0 1e-60 MTQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHEKFEELYNEASQYVDDLAER TLAIGGNPVATLKESLELSIVKEADTHYTAEEMVKAFSKDLTQISKQLGKAIEVAGEAGD DVSEDMFIGMQTSVDKHNWMFKSYLV >gi|312979652|gb|ACRM01000013.1| GENE 16 16829 - 17539 1009 236 aa, chain - ## HITS:1 COG:SA1940 KEGG:ns NR:ns ## COG: SA1940 COG0813 # Protein_GI_number: 15927712 # Func_class: F Nucleotide transport and metabolism # Function: Purine-nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 1 236 1 236 236 440 92.0 1e-124 MTNGTPHIQPNGAKIAKTVLMPGDPLRAKYIADNFLENVEQFNEVRNMFGYTGTYKGKEI SVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVD QFNIPGHFAPIADFELITKAKQVADDIGAVTHVGNILSSDTFYNADKHFNDSWKNMGILG IEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATSAEERQTSFTQMMEIALEIAE >gi|312979652|gb|ACRM01000013.1| GENE 17 17686 - 18348 989 220 aa, chain + ## HITS:1 COG:SA0133 KEGG:ns NR:ns ## COG: SA0133 COG0274 # Protein_GI_number: 15925842 # Func_class: F Nucleotide transport and metabolism # Function: Deoxyribose-phosphate aldolase # Organism: Staphylococcus aureus N315 # 1 220 1 220 220 326 81.0 2e-89 MEYSKYIDHTLLKPESTRQQIDKIISEAKAYHFKSICVNPTHVKYASEQLVNSDVLVCTV IGFPLGATTTATKIFETEDAIKNGASEIDMVINIGALKDGRYEDVQKDIEGVVGAANGKI VKVIIETILLTDDEKVKASELAKAAGADFVKTSTGFAGGGATPEDVKLMKDTVGDELEVK ASGGVRNLEDFHKMLNAGATRIGASAGVQIIKGLESNSDY >gi|312979652|gb|ACRM01000013.1| GENE 18 18405 - 19706 1625 433 aa, chain + ## HITS:1 COG:SA1938 KEGG:ns NR:ns ## COG: SA1938 COG0213 # Protein_GI_number: 15927710 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine phosphorylase # Organism: Staphylococcus aureus N315 # 1 433 14 446 446 659 83.0 0 MRMVDIIEKKRDGQILTKEEIEFFIEGYTNGDTPDYQASSLAMAIFFQDMNEEERAALTM AMVNSGDVIDLSKINGIKVDKHSTGGVGDTTTLVLAPLVAAVGVPVAKMSGRGLGHTGGT IDKLESIDGFHVEISEADFIKLVNENQVAVIGQTGNLTPADKKLYALRDVTGTVNSIPLI ASSIMSKKIAAGADAIVLDVKTGNGAFMKTLEDAEALAHAMVSIGNNVGRNTMAIISDMS QPLGRAIGNALELKEAIDTLNGQGPEDLTELVLTLGSQMVVLAERANTLEEARQLLNEAI ENGSALDKFKTFLENQGGDASVVNLPELLPTAEYQIDYKAKSSGVVSELIANEIGVASMM LGAGRQTKDDDIDLSVGIVLNKKVGDKVNVGESLLTIHSNRENVDDVIKKLDESIEIKAQ AKTPTLIHKIITE >gi|312979652|gb|ACRM01000013.1| GENE 19 19718 - 20902 1528 394 aa, chain + ## HITS:1 COG:SA0134 KEGG:ns NR:ns ## COG: SA0134 COG1015 # Protein_GI_number: 15925843 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphopentomutase # Organism: Staphylococcus aureus N315 # 1 391 1 391 392 689 87.0 0 MTTPFKRVHLIVMDSVGIGEAPDAAAFNDEGSHTLKHTLEGFNQSLPNLEKLGLGNIEDL PVVNKVEQPGAFFTKLSEASVGKDTMTGHWEIMGLNIMQPFKVYPNGFPDELIQEIEEMT GRKVVANKPASGTAIIDELGEHQMKTGDLIVYTSADPVLQIAAHEDIIPLEELYDICEKV RELTKDPKYLIGRVIARPYVGEPGNFTRTSNRHDYALKPFGKTVMNTLKDHDYDVIAIGK INDIYDGEGVTEAIRTKNNMDGMDQLINVVKKDFNGISFLNLVDFDALYGHRRDKDGYAQ AIKDFDERLPELIDHLQEDDLVIITADHGNDPIAEGTDHTREYIPVLMFSPKIDAYHELS GDTTFSSIGATIADNFNVELPKYGKSYLKEMGVE >gi|312979652|gb|ACRM01000013.1| GENE 20 20905 - 21255 473 116 aa, chain + ## HITS:1 COG:SA1937 KEGG:ns NR:ns ## COG: SA1937 COG4270 # Protein_GI_number: 15927709 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 116 1 116 116 143 66.0 9e-35 MKIMRYLLGLAFGSAGILHFTNERQFRSIVPEYLPLRKTAVLVTGVFEMFFGVMLLAKRP ADWLKKGINAFLLAVLPANIYMARKQLPLGNKSVPKWALYLRLPLQFILIAIVKKL >gi|312979652|gb|ACRM01000013.1| GENE 21 21322 - 21792 690 156 aa, chain - ## HITS:1 COG:SA1936 KEGG:ns NR:ns ## COG: SA1936 COG1854 # Protein_GI_number: 15927708 # Func_class: T Signal transduction mechanisms # Function: LuxS protein involved in autoinducer AI2 synthesis # Organism: Staphylococcus aureus N315 # 1 156 1 156 156 287 87.0 5e-78 MTKMNVESFNLDHTKVVAPYIRLAGTMEGINGDVIKKYDLRFKQPNKAHMDMPALHSLEH LMAEHVRNHSDKVVDLSPMGCQTGFYVSFIDHDDYEDVLNIVEKTLNDVLEATEVPACNE VQCGWAASHSLEGAKALAKEFLDKRNQWNDVFGEGK >gi|312979652|gb|ACRM01000013.1| GENE 22 22052 - 23227 1528 391 aa, chain + ## HITS:1 COG:SA1935 KEGG:ns NR:ns ## COG: SA1935 COG1473 # Protein_GI_number: 15927707 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 1 391 1 391 394 664 85.0 0 MSSKQEILDYIENKKYDYVEISHRIHERPELGNEEIFASRTLIDQLRANEFEIETDIAGH ATGFIATYQSEKEGPTIGYLAEYDALPGLGHACGHNIIGTASVLAGVALKQVIDHIGGKV VVLGCPAEEGGENGSAKASYVKAGVIDDIDIALMIHPGNETYPTINTLAVDVLDIKFYGK SAHASENADEALNALDAMISYFNGVAQLRQQIKKSHRVHGVILDGGKAANIIPDYTHARF YTRATTRKELDILTERVNQIARGAAIQTGCDYEFGPIQNGVNEFIKTPKLDELFEKYAIE VGEEVSYDDFGFGSTDTGNVSHIVPTIHPHVKIGSRNLVGHTHRFREAAASVHGDQALIR GAKIIALMGLELIENKKLFDEVVEQHSQIKG >gi|312979652|gb|ACRM01000013.1| GENE 23 23232 - 24428 1371 398 aa, chain + ## HITS:1 COG:no KEGG:SH0903 NR:ns ## KEGG: SH0903 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 9 395 9 395 397 629 77.0 1e-179 MKNEYSVPKLTLSDLYDENIVYNSRPSYALNPWLTTEEHQSNFLTGREMIIAKDMPIVVH EASITDKLQQLFDLIGKKIPEHLYTFRNRETYERLLQEIINKEGKKIYFQYIENNDIVED EAYAIDKDVFVALNNKSRIPEWTNHKYLPDREIVSIRDFKGRIKDWDYPFVIKPGDELPT AGGYGVMICYNDEDLEKATKRIFEAAHATDNLIIEQKIEAVKNYCVQFAYSKEIGITYLG TAHQITDKYGLYAGNENVHDVPEKVIQAGREIMQNGVNLGFIGVAGFDLLLDENDNVFAI DLNFRQNGSTSMLLLQDELNPNYQKFYSYFSRGDNTRFFNVILKYVKQGVLYPLSYYDGD WFGKDEVKSRFGCIWNADSKEEVEQLEQAFISELDDTN >gi|312979652|gb|ACRM01000013.1| GENE 24 24533 - 25198 945 221 aa, chain + ## HITS:1 COG:no KEGG:SERP1738 NR:ns ## KEGG: SERP1738 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 221 1 221 221 271 65.0 1e-71 MEYKHNDYFKEILINEVIILASKNKKLIRIHHEDGDYTGMWTNEDIAKEYLNHSDIQFDR LLNIDIDTFVTYDMDELFDESDKILINTSIKEEGHIVKVVDMMDELMSELDKIRLKEFAK DISKENHVFGLTRKGEKRFILISDKENQKPNIMPVWSIKNRARKVRDKDFEECDLIEIEG SVFSEWLDKLRDNDQAVAVDLKPGVVGTIVSPQKVSNELSF >gi|312979652|gb|ACRM01000013.1| GENE 25 25268 - 26068 1053 266 aa, chain - ## HITS:1 COG:SA1932 KEGG:ns NR:ns ## COG: SA1932 COG5146 # Protein_GI_number: 15927704 # Func_class: H Coenzyme transport and metabolism # Function: Pantothenate kinase, acetyl-CoA regulated # Organism: Staphylococcus aureus N315 # 1 265 1 265 267 370 72.0 1e-102 MRVGIDAGGTLIKIAMEDDTHRTLSTELTTDINKVIQWLNQNEFEKINLTGGNAGVIAEN IKQSSQIFVEFDAASRGLGILLKEQGHHINQYIFANIGTGTSLHYYNGHHQERVGGIGTG GGMIRGLGYLLTEISDYETLTDLAQFGNRDIIDLKVKHIYKDSEPPIPGELTAANFGNVL NNMNEHVTNSDKLASVVGVVGEVITTMAITVAREYQTKNIVYIGSSFNNNPLLRKVIEDY TVLRGCHPFYIENGAFSGAIGVLHLS >gi|312979652|gb|ACRM01000013.1| GENE 26 26249 - 27109 868 286 aa, chain + ## HITS:1 COG:SA1931 KEGG:ns NR:ns ## COG: SA1931 COG0454 # Protein_GI_number: 15927703 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 7 286 7 286 286 383 67.0 1e-106 MSIVKQFENIIIQEFEEQYRDDVLNFELSERQQIYSSLPKSVLEDALNDENRVANIAINE NGDVVGFFVLHQYYQHEGYDTPEHVVYVRSLSINEKFQGQGYGTTMMMYLPQYVQALFPD FNHLYLVVDTENEGAWNVYERAGFMHTATKEEGPIGKERLYYLDLDSKHVSSLKLVENKD SNIAMYQIIDLLKDDQKVGFIALEHLDTHLKIAAIEVYKDQRKEGIAGSALRQLPTYVRK HFKEIRSIGITLFGENNELKPLCISSGFVETDQSDDLVIFKKYINY >gi|312979652|gb|ACRM01000013.1| GENE 27 27219 - 27749 828 176 aa, chain + ## HITS:1 COG:SA1930 KEGG:ns NR:ns ## COG: SA1930 COG3343 # Protein_GI_number: 15927702 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, delta subunit # Organism: Staphylococcus aureus N315 # 1 152 1 154 176 163 85.0 2e-40 MKIQDYTKEMVDEKSFIDMAYTLLHDKGSTMNLYDIIDEFKSLGNYEYDEIENRIVQFYT DLNTDGRFLNVGENQWGLRDWYSVDDIEEKIAPTIQKFDILDDDDEEDENLKLLGDDEMD DDDDIPAQTDDQETLDDSDDNEEDIDGSDIVIEEDDDDDIAEGEEEAFEDAEDFND >gi|312979652|gb|ACRM01000013.1| GENE 28 27947 - 29554 2026 535 aa, chain + ## HITS:1 COG:SA1929 KEGG:ns NR:ns ## COG: SA1929 COG0504 # Protein_GI_number: 15927701 # Func_class: F Nucleotide transport and metabolism # Function: CTP synthase (UTP-ammonia lyase) # Organism: Staphylococcus aureus N315 # 1 535 1 535 536 1004 90.0 0 MTKFIFVTGGVVSSLGKGITAASLGRLLKDRGLKVTIQKFDPYLNVDPGTMSPYQHGEVF VTDDGAETDLDLGHYERFIDINLNKYSNVTAGKVYSHVLKKERRGDYLGGTVQVIPHITN EIKERLLLAGESTNADVVITEIGGTTGDIESLPFIEAIRQIRSDLGRENVMYVHCTLLPY IKAAGEMKTKPTQHSVKELRGLGIQPDLIVVRTEYEMTQDLKDKIALFCDIDKESVIECR DASSLYEIPLQLSAQNMDDIVIKRLDLDAKYDTQLDEWQYLLDTVNSLDGTITIGLVGKY VSLQDAYLSVVESLKHAGYPLKKDVVVKWIDSSEVTDENVESYLSDVDGILVPGGFGFRA SEGKISAIKYARENNIPYFGICLGMQLATVEFARNVVGLKDAHSAELDPNTPYPIIDLLP EQKDIEDLGGTLRLGLYPCTIKDHTLAHDIYNETNIEERHRHRYEFNNTYREQLEDKGMV FSGTSPDGRLVEMVEIPENDFFIACQFHPEFLSRPNRPQPIFKAFVEAAYKHQQN >gi|312979652|gb|ACRM01000013.1| GENE 29 29672 - 30193 655 173 aa, chain - ## HITS:1 COG:no KEGG:SH0909 NR:ns ## KEGG: SH0909 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 173 1 173 173 274 78.0 9e-73 MSKILQTQLTGVFNRLEDQALDIQMAAQCLIQAIGGEGYVYINGYGDLKFFETFILDSDE KLNSSKKLSELNSLNDLDTTDRVFLFSPFYTKEVAQDVQQLIDKDIDFVLVCNRPKQEDF PEHLMHFVNLSTPRPIVYTEDYDKIVQPHTMAFNYIYYDIYTQMIEMTRDLEL >gi|312979652|gb|ACRM01000013.1| GENE 30 30355 - 31212 1321 285 aa, chain + ## HITS:1 COG:SA1927 KEGG:ns NR:ns ## COG: SA1927 COG0191 # Protein_GI_number: 15927699 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose/tagatose bisphosphate aldolase # Organism: Staphylococcus aureus N315 # 1 285 1 286 286 518 94.0 1e-147 MPLVSMKEMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAARYMSGF YTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDASHSPFEENIEIT SKVVEYAHQHGVSVEAELGTVGGQEDDVVGGIIYADPKECQELVERTGIDTLAPALGSVH GPYKGEPKLGFKEMEEIGASTGLPLVLHGGTGIPTKDIQKAIPYGTAKINVNTENQIASA KAVRDVLNNDKEVYDPRKYLGPAREAIKETVKGKIREFGTSNRAK >gi|312979652|gb|ACRM01000013.1| GENE 31 31609 - 32880 1729 423 aa, chain + ## HITS:1 COG:SA1926 KEGG:ns NR:ns ## COG: SA1926 COG0766 # Protein_GI_number: 15927698 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Staphylococcus aureus N315 # 1 423 1 419 419 686 83.0 0 MSQEVIKIRGGQPLKGEVTISGAKNSAVAIIPATLLAQGQVKIDGLPQISDVETLVSLLE DLNIKTNLNGKTLEVDTAEIKNAPLPNNKVESLRASYYMMGAMLGRFKKCVIGLPGGCPL GPRPIDQHIKGFKALGAEIDESSDTSMKIEAKELHGANIFLDMVSVGATINIMLAAVHAK GQTTIENAAKEPEVVDVANFLNSLGANIKGAGTSTLKISGVEELHGAEYQVIPDRIEAGT YMCIAAACGEEVTIKNIVPKHLEALTVKLNELGVDIDIDDDKEQIVIKGKSSYKNVDIKT LVYPGFATDLQQPITPLLFMTDGPSFVTETIYPARFRHVEELKNMGASIEADTSTGTATI KPSKLQGAEVYASDLRAGACLIIAGLLAEGVTTIYNVKHIYRGYTDIVKHLKELGADIWT EQV >gi|312979652|gb|ACRM01000013.1| GENE 32 32956 - 33291 349 111 aa, chain + ## HITS:1 COG:SA1925 KEGG:ns NR:ns ## COG: SA1925 COG1733 # Protein_GI_number: 15927697 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 111 2 112 112 174 74.0 3e-44 MEICPYLEETFKIVGRSWNGLIINYLSRCADYTAHFSDMKRDLKTITPRALSIKLTELGE WGLVDKKVISTRPVSIVYELTDKGKALAEALRPIEAWARDYVTLEHNDSVK >gi|312979652|gb|ACRM01000013.1| GENE 33 33401 - 34828 1945 475 aa, chain + ## HITS:1 COG:SA1924 KEGG:ns NR:ns ## COG: SA1924 COG1012 # Protein_GI_number: 15927696 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 475 1 475 475 784 84.0 0 MRNYTQQYINGEWIDSESNETIDVINPATEEVIGKVAKGNEKDVEKAVQAAHDVYLEFRH SSVEERKQLLDRIVEEYKNRKQDIIEAITAELGAPLTVSENVHYQMGLQHFSEARRALDS FEFEERRGDDLVTKEAIGVSGLVTPWNFPTNQTSLKLAAAFAAGSPVVLKPSEETPFAAI ILAEIFEKAGVPKGAFNLVNGDGEGVGNPLSEHPKVRMMSFTGSGATGSKIMEKAAKDIK KVSLELGGKSPYIVLDDVDIKEAAKATTGKVVNNTGQVCTAGTRILVPESIKQEFLTALK EEFSNVKVGDPLDKNTQVGPIISKKQFDTVQSYIDKGIEEGAELLYGGPGKPEGLDTGYF ARPTIFINVKNDMTIAQEEIFGPVVSVITYNDLDEAIEIANDTKYGLAGYVIGKDKETLQ KVARSIEAGRIQINESPNEPYLPFGGYKQSGIGREWGDYGIEEFLEVKSIAGYFK >gi|312979652|gb|ACRM01000013.1| GENE 34 35068 - 36384 1579 438 aa, chain + ## HITS:1 COG:SA1923 KEGG:ns NR:ns ## COG: SA1923 COG1158 # Protein_GI_number: 15927695 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Staphylococcus aureus N315 # 1 438 1 438 438 792 94.0 0 MPERERTSPQYESFHELYKNYTTKELTQKAKSLKLTNYSKLNKSELVLAIMEAQMEKDGN YYMEGVLDDIQPDGYGFLRTVNYSKGEKDIYISASQIRRFEIKRGDKVTGKVRKPKDNEK YYGLLQVDFVNDENAEVVKKRPHFQALTPLYPEERIILETEPRNYSTRIMDLVTPIGLGQ RGLIVAPPKAGKTSLLKEIANAISTNKPDAKLFILLVGERPEEVTDIERSVESAEVVHST FDEPPQHHVKVAELLLERAKRLVEIGQDVIILMDSITRLARAYNLVIPPSGRTLSGGLDP ASLHKPKAFFGAARNIEAGGSLTILATALVDTGSRMDDMIYEEFKGTGNMELHLDRKLSE RRIFPAIDIGRSSTRKEELLISKSELESLWQLRNMFTDSTDFTERFIRKLKRSENNKEFF EQLQKAAAESTKTGKPII >gi|312979652|gb|ACRM01000013.1| GENE 35 36500 - 36757 455 85 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474890|ref|ZP_04059619.1| ribosomal protein L31 [Staphylococcus hominis SK119] # 1 85 1 85 85 179 100 3e-44 MKQGIHPDYHKVIFLDTTTNFKFLSGSTKTSSETMEWEDGNEYPVIRLDVSSDSHPFYTG RQKFAAADGRVERFNKKFGLKSNNN >gi|312979652|gb|ACRM01000013.1| GENE 36 36932 - 37531 641 199 aa, chain + ## HITS:1 COG:SA1921 KEGG:ns NR:ns ## COG: SA1921 COG1435 # Protein_GI_number: 15927693 # Func_class: F Nucleotide transport and metabolism # Function: Thymidine kinase # Organism: Staphylococcus aureus N315 # 1 199 1 199 199 360 86.0 1e-100 MYETYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVIVFKPAIDDRYHKEKVVSHDG NELEAINISTAREILLQNLSQFDVIGIDEIQFFDNEIVHIVEKLAEDGHRVVVAGLDMDF RGEPFDPMPQIMAVSEQVTKLQAVCAICGSSSSRTQRLINGQPARIDDPIILVGANESYE PRCRAHHIVAPSINDKEEI >gi|312979652|gb|ACRM01000013.1| GENE 37 37531 - 38607 1541 358 aa, chain + ## HITS:1 COG:SA1920 KEGG:ns NR:ns ## COG: SA1920 COG0216 # Protein_GI_number: 15927692 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor A # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 556 89.0 1e-158 MFDQLDIVEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAE IDEMLTETDDKEEIEMLKEEASGLKGELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGG DEAAIFAGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGA HRVQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDS AVRITHIPTGIIATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDR SERVRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIIDALTLSEQTEKLKELNNGEL >gi|312979652|gb|ACRM01000013.1| GENE 38 38594 - 39430 363 278 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|225874212|ref|YP_002755671.1| ribosomal protein L11 methyltransferase [Acidobacterium capsulatum ATCC 51196] # 1 274 16 286 294 144 34 1e-33 MASFKDTLQEAIELTKEKGFEQSRAEWLMLDLFEWSRTDYLMHMYDEMSQAEEAIFSLAL DRMLLGEPIQYIVGFQSFYGYQLQVNSHCLIPRPETEEVMLHFLEHCKDGSTIADIGTGS GAIAIVLKKLNPTLNVIATDLIEDTLEVASDNAHQLKADIRFLKGNALKPLIKENIKLDG LISNPPYIDQTEMKDMEDTVVKYEPHIALFAEDEGYEIYEMILDDLPKVLNKGAYVTFEI GYNQGEILKARIINKYPHVNVNLLKDINGLNRMISFKW >gi|312979652|gb|ACRM01000013.1| GENE 39 39515 - 40555 1075 346 aa, chain + ## HITS:1 COG:SA1918 KEGG:ns NR:ns ## COG: SA1918 COG0009 # Protein_GI_number: 15927690 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation factor (SUA5) # Organism: Staphylococcus aureus N315 # 1 346 1 348 348 438 58.0 1e-123 MKTKIWNMKDYSQDSQTFSQLAEIKTIYENGGLIAIPTETVYGLGANAKNEQAVENIYKA KGRPSDNPLIVHIYKQSQMDAFVSTIPKEAQKLMNAFWPGPISFILPLKQGYLCEKVTGG LNSIAVRMPSHPIGRAILEYVDLPIAAPSANISGRPSPTTFQHVYNDLNGKIDGIVNGDQ SEEGLESTVLDCTQFPFRIARPGSITQTMLNHVVPHSVIQYDYNQLERPIAPGMKYKHYA PKTPVYMLTEFTQPISELNESGLAFVLPSSMKKYVPKDCTFISLCENQRDVKGANHNLYK ILHDIDDDERIQKAFIYTFDNIEGSEAVMNRMMKATGNQIVKGREL >gi|312979652|gb|ACRM01000013.1| GENE 40 40552 - 40968 437 138 aa, chain + ## HITS:1 COG:SA1917 KEGG:ns NR:ns ## COG: SA1917 COG0394 # Protein_GI_number: 15927689 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 135 1 135 139 141 48.0 3e-34 MKIIFVCTGNTCRSPIAESIATVLLPNDSIQSRGLFAMNGQSITPEALEVILENNLPEPS VSQIFSQDDLKSDLILTMTDNHKRQLISQYGTEYPIYTLCEYVSETGEIGDPFGGSIDTY RHTFNQLYALINKLKHEE >gi|312979652|gb|ACRM01000013.1| GENE 41 41078 - 41602 472 174 aa, chain + ## HITS:1 COG:SA1916 KEGG:ns NR:ns ## COG: SA1916 COG4475 # Protein_GI_number: 15927688 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 174 1 174 174 282 79.0 3e-76 MQELTTLLDELKSQSFFKKDEMCVIGCSTSEVIGEKIGSVGSMEVAETIFNELERIKRET GVSFAFQGCEHINRAIIIEREDYNPFTMEEVTVVPDVHAGGSLATYAYQHMNDPIVIEYI KVPKGIDIGQTLIGMHINHVCVPLRTSVKKVGEAIVTIATSRPKKIGGERAKYE >gi|312979652|gb|ACRM01000013.1| GENE 42 41627 - 42865 1513 412 aa, chain + ## HITS:1 COG:SA1915 KEGG:ns NR:ns ## COG: SA1915 COG0112 # Protein_GI_number: 15927687 # Func_class: E Amino acid transport and metabolism # Function: Glycine/serine hydroxymethyltransferase # Organism: Staphylococcus aureus N315 # 1 412 1 412 412 704 84.0 0 MSYIKEQDHIIYEAIQNEYNRQNNNIELIASENFVSEAVMEAQGSVMTNKYAEGYPGRRY YGGCEYVDVTETIAIERIKALFGAEHANVQPHSGSQANMAVYLVALEMGDTVLGMNLSHG GHLTHGASVNFSGKFYNFIDYGVDKETERINYDEIRELALKHKPKLIVAGTSAYSRQLDF KKFKEIADEVGAKLMVDMAHIAGLVATGLHPNPVEYADFVTSTTHKTLRGPRGGLILCKE KYKKEIDKTIFPGIQGGPLEHVIAAKAVAFGEALEPDFKVYQEQVIKNAKTLAETLQDEG FRIVSGGTDNHLVSVDVKQSVNLTGKQAEETLDSIGITCNKNTIPFDQEKPFVTSGIRLG TPAATTRGFDEVAFKEVALIISTALKNSNDQAKLKEASDRVKQLTQQYPLYE >gi|312979652|gb|ACRM01000013.1| GENE 43 42890 - 43519 1016 209 aa, chain + ## HITS:1 COG:SA1914 KEGG:ns NR:ns ## COG: SA1914 COG0035 # Protein_GI_number: 15927686 # Func_class: F Nucleotide transport and metabolism # Function: Uracil phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 209 1 209 209 378 93.0 1e-105 MSKVHVFDHPLIQHKLSYIRDKNTGTKEFRELVDEVGMLMAYEVTRDLQLQDVEIETPVT TMTAKRLAGKKLAIVPILRAGLGMTDGVLNLVPAARVGHIGLYRDPKTLKAVEYFAKLPQ DIDEREIIVVDPMLATGASAIEAINSLKNRGAKNIRFMCLIAAPEGVEKMQEAHKDVDIY IAALDEKLNEKAYITPGLGDAGDRLFGTK >gi|312979652|gb|ACRM01000013.1| GENE 44 43539 - 44684 1086 381 aa, chain + ## HITS:1 COG:SA1913 KEGG:ns NR:ns ## COG: SA1913 COG0381 # Protein_GI_number: 15927685 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine 2-epimerase # Organism: Staphylococcus aureus N315 # 1 375 2 376 376 505 66.0 1e-143 MRKIMTVFGTRPEAIKMAPLVKALEKDSMLEPIIVVTAQHREMLDSVLKTFNITPHYDLN IMKKGQTLSEITARSIIQLEQIMKKECPDMVLVHGDTTTTFSGALAAFYNHTSVGHIEAG LRSGNKYAPFPEEINRQMVSNIADLHFAPTIGAKHNLIQENKDKTSIVITGNTAIDTLNF TINKNYTSELIEKHKNKKIVLLTVHRRENIGKPMEHIFKAVRDIVEDIEDVVVVFPLHMN PEVRKLSYAYLEKHPRVELIEPLDVVDFHNFANHAYLILTDSGGIQEEAPSLNKPVLVLR DVTERPEGVEAGTLKVIGTEYTHVYQEIRKLLMNKQVYNNMAYAQNPYGDGKASERICES IKYYLGLTEEIPKEFEKLKNC >gi|312979652|gb|ACRM01000013.1| GENE 45 44892 - 45179 240 95 aa, chain + ## HITS:1 COG:no KEGG:SH0925 NR:ns ## KEGG: SH0925 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 95 21 115 116 106 74.0 2e-22 MLSILYFIKSNSFLLGLIIGTLGSLINTYIFEIYLSRTKQPDNIHISTGNVWRYLVAIIA CIVWVVFKENVNIIGIMIGLMISYVLIILRPLLLK >gi|312979652|gb|ACRM01000013.1| GENE 46 45208 - 45933 741 241 aa, chain + ## HITS:1 COG:SA1911 KEGG:ns NR:ns ## COG: SA1911 COG0356 # Protein_GI_number: 15927683 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit a # Organism: Staphylococcus aureus N315 # 1 241 1 242 242 381 83.0 1e-106 MDHKSPLVSWNVFGFDIVFNLASIMMLIITAIIVFIIAIVCTRNLKKRPSGKQNFIEWIF DFVRGIIESNMAWKKGGQFHFLAVTLILFIFVANMLGLPFAIVTHDHYLWWKSPTADATV TLTLSTMMILLTHYYGVKMRGTKAYVGNYFKPFWPLAIINVFEEFSSTLTLGLRLYGNIF AGELLLSLLAGLFFQNGWGWIISIPGLIIWQGFSIFVGTIQAYIFIMLSMVYMSHKVADA H >gi|312979652|gb|ACRM01000013.1| GENE 47 45966 - 46178 468 70 aa, chain + ## HITS:1 COG:SA1910 KEGG:ns NR:ns ## COG: SA1910 COG0636 # Protein_GI_number: 15927682 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K # Organism: Staphylococcus aureus N315 # 1 68 1 68 70 79 92.0 2e-15 MGLIAAAIAIGLSALGAGIGNGLIVSRTVEGVARQPEARGQLMSIMFIGIGLVEALPIIG VVISFMTLFR >gi|312979652|gb|ACRM01000013.1| GENE 48 46265 - 46795 822 176 aa, chain + ## HITS:1 COG:SA1909 KEGG:ns NR:ns ## COG: SA1909 COG0711 # Protein_GI_number: 15927681 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, subunit b # Organism: Staphylococcus aureus N315 # 8 176 6 173 173 217 82.0 7e-57 MPVNALTNSFVLGAAAGGVEWGTTIVTIITFIILLALLKKFAWGPLKEVMDKRERDINRD IDEAEEAKLNAQKLEEENKKTLKETQDEVHHILEDARIQARKQHEEIIKDAHERANGMIE TAQSEIKSEKERALADINNQVSELSVLIASKVLQKEISEQDQKGLVDKYLKEAGDK >gi|312979652|gb|ACRM01000013.1| GENE 49 46795 - 47334 677 179 aa, chain + ## HITS:1 COG:SA1908 KEGG:ns NR:ns ## COG: SA1908 COG0712 # Protein_GI_number: 15927680 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) # Organism: Staphylococcus aureus N315 # 1 179 1 179 179 187 55.0 7e-48 MADVAKKYAKALSDVSIDKDRLDLMYEELKEVSNATLNYIDDLKAIDSNPNQPASERRKF AGIVFGDANYYLKNMLMILANNRHLALIHSIFKEFKHLYDHHYNQGDALVESVYQLNEEE LSHIERVILNKTKLSKVHITTKINPNLIGGFRAKVGTTVLDGSIKNDLEQIERKFKRVN >gi|312979652|gb|ACRM01000013.1| GENE 50 47353 - 48861 2069 502 aa, chain + ## HITS:1 COG:SA1907 KEGG:ns NR:ns ## COG: SA1907 COG0056 # Protein_GI_number: 15927679 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, alpha subunit # Organism: Staphylococcus aureus N315 # 1 502 1 502 502 901 93.0 0 MAIKAEEISALLRSQIENYESEMSVDDVGTVLQIGDGIALIHGLNDCMAGELVEFSNGVL GLAQNLEESNVGVVILGPYSEIREGDEVKRTGRIMEVPVGEELIGRVVNPLGQPIDGQGP INSTKTRPVEQKATGVMDRKSVDEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTTIGI DTILNQKGLDTICIYVAIGQKDSTVRANVEKLRQAGALDYTIVVSASAAEPAPLLYIAPY SGVTMGEEFMFNGKNVLVVYDDLTKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLER AAKLNDALGGGSITALPIIETQAGDISAYVPTNVISITDGQIFLQSDLFFSGVRPAINAG QSVSRVGGSAQIKAMKKVAGTLRLDLASYRELESFAQFGSDLDEYTARKLERGKRTVEVL KQDQNKPLPVENQVLIIYALTKGYLDDIPVEDITRFEDELNSWSKSNASELLGEIRETGN LPDDAKFESAINEFKKSFSKSE >gi|312979652|gb|ACRM01000013.1| GENE 51 48893 - 49759 1056 288 aa, chain + ## HITS:1 COG:SA1906 KEGG:ns NR:ns ## COG: SA1906 COG0224 # Protein_GI_number: 15927678 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, gamma subunit # Organism: Staphylococcus aureus N315 # 1 288 1 288 288 449 85.0 1e-126 MASLKEIDSRIKSTKKMKQITKAMNMVSSSKLRRAEKNTKQFEPYMEKMQDAITAIAGAS KNSNHPMLRPRHIQRSGYLVITSDKGLAGAYSSNVLKRLVNDIKEKHTNSDEYSIIVLGQ SGVDFLKNRGYEVESSLVDVPDQPSFKSIQAIAKHAIDLFSEEHIDELKIYYSHYVSVLE NKPSVKQVLPLSQEDSSQGQGQMSSYEFEPDKDSILRVILPQYVESLIYGTILDAKASEH AARMTAMKNASDNATELIDDLSLQYNRARQAEITQQITEIVGGSAALE >gi|312979652|gb|ACRM01000013.1| GENE 52 49781 - 51193 2183 470 aa, chain + ## HITS:1 COG:SA1905 KEGG:ns NR:ns ## COG: SA1905 COG0055 # Protein_GI_number: 15927677 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, beta subunit # Organism: Staphylococcus aureus N315 # 1 470 1 470 470 847 93.0 0 MGNGRVTQVMGPVIDVRFEHNEVPEINNALIIEVPKNDGTFKLTLEVALQLGDDVVRTIA MDSTDGVQRGMQVVNTGKDISVPVGEETLGRVFNVLGETIDLNEKIDSSVRRDPIHRRQP NFDELSTEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELINNIAQEHGGIS VFAGVGERTREGNDLYYEMSDSGVINKTAMVFGQMNEPPGARMRVALSALTMAEYFRDEQ GQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITSTNKGSVTSI QAVFVPADDYTDPAPATAFAHLDATTNLERKLTEMGIYPAVDPLASTSRALEPSIVGQEH YEVAREVQSTLQKYRELQDIIAILGMDELSEEDKLTVERARRIQFFLSQNFHVAEQFTGQ KGSYVPVKTTVANFKDILNGKYDHIPEDAFRLVGSMDDVIAKAKDMGVEV >gi|312979652|gb|ACRM01000013.1| GENE 53 51215 - 51616 586 133 aa, chain + ## HITS:1 COG:SA1904 KEGG:ns NR:ns ## COG: SA1904 COG0355 # Protein_GI_number: 15927676 # Func_class: C Energy production and conversion # Function: F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) # Organism: Staphylococcus aureus N315 # 1 133 1 134 134 184 78.0 3e-47 MNTVNLDIVTPNGSVYEKDDVELVVFQTTAGEIGIMSGHIPTVAALKIGHIKVKFKNGTE YIAVSGGFVEIRQHKVSVIVQTAETASEIDVERAKLARQRAQSHLDEEDNSDINRAKRAL ARAENRLRVAELK >gi|312979652|gb|ACRM01000013.1| GENE 54 51925 - 52155 208 76 aa, chain + ## HITS:1 COG:SA1903 KEGG:ns NR:ns ## COG: SA1903 COG4836 # Protein_GI_number: 15927675 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 75 1 75 77 109 82.0 1e-24 MEYVGQFAIIHLFLHVICICIAYWALHSLRLDQFFKKGYSTRLQVCMIFLAILMGTAVSN FIVDLLQYSTQIKYLF >gi|312979652|gb|ACRM01000013.1| GENE 55 52262 - 53527 1750 421 aa, chain + ## HITS:1 COG:SA1902 KEGG:ns NR:ns ## COG: SA1902 COG0766 # Protein_GI_number: 15927674 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine enolpyruvyl transferase # Organism: Staphylococcus aureus N315 # 1 421 1 421 421 645 83.0 0 MDKIIINGGNRLTGEVQVEGAKNAVLPILTASLLASEGKSKLTNVPDLSDVVTINNVLST LNAKVDYDKENGSVTVDASATLNEEAPYEYVSKMRASVLVMGPLLARLGHAIVALPGGCA IGARPIEQHIKGFEALGAEIHLENGNIYASTKEGLKGANIHLDFPSVGATQNIIMGASLA QGKTVIENVAKEPEIVDLANYINEMGGNVIGAGTDTITIHGVEKLTGVKHAIIPDRIEAG TFIIAAAITRGDVFVKGAVKEHMTSLIYKLEEMGVNLDFNEEGVHVTTNGELQPVDIKTL PHPGFPTDMQSQMMVLLLTAEGHKVVTETVFENRFMHVAEFRRMNANINVEGRSAKIEGK SQLQGAQVKATDLRAAAALILAGLVAEGTTQVTELKHLDRGYVNFHEKLKSLGADIKRVN D >gi|312979652|gb|ACRM01000013.1| GENE 56 53555 - 53992 587 145 aa, chain + ## HITS:1 COG:SA1901 KEGG:ns NR:ns ## COG: SA1901 COG0764 # Protein_GI_number: 15927673 # Func_class: I Lipid transport and metabolism # Function: 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases # Organism: Staphylococcus aureus N315 # 1 144 1 144 146 271 90.0 4e-73 METIFDYNEIKKIIPHRQPFLLIDRIVEYEEGKRCVGLKQVSGNEPFFQGHFPDYAVMPG VLITEALAQTGAVAMLNSEENKGKIALFAGIDKCRFKKQVTPGDTLMLEVEITKIKGPIG KGTAKATVDGQLACSCELTFAIQDA >gi|312979652|gb|ACRM01000013.1| GENE 57 54042 - 54482 343 146 aa, chain - ## HITS:1 COG:no KEGG:SH0937 NR:ns ## KEGG: SH0937 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 146 1 146 147 230 80.0 1e-59 MKTFKAVRFQIVSDGNRISEFELYDGVIINKESSGTGWLLEIVISDTHYDIMQKYYESQT ILDIRVVITRPSNDPALFDATIKNISLFAGKMSIIFECHIYTHRQVYAETLLEQLIDEGL SGEELKITFNRMMQSKPKLKEEKFKK >gi|312979652|gb|ACRM01000013.1| GENE 58 54676 - 55071 365 131 aa, chain + ## HITS:1 COG:SA1899 KEGG:ns NR:ns ## COG: SA1899 COG0629 # Protein_GI_number: 15927671 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-binding protein # Organism: Staphylococcus aureus N315 # 1 130 1 131 131 179 73.0 2e-45 MLNKIVIVGRMTKDAKIYNNEEVKIATFSVATERNYKDENDEIACDYILCKAFGKMASNI EKYTSQGSLVGITGQMRSRKYEKEKQTHFVTELYVETIKFMSPKLNNEKLSDNSLNTDTY PFDHLELMNIK >gi|312979652|gb|ACRM01000013.1| GENE 59 55476 - 56240 988 254 aa, chain + ## HITS:1 COG:no KEGG:SH0939 NR:ns ## KEGG: SH0939 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 254 1 235 235 176 55.0 8e-43 MKKTIIASSLAVGLGLVAGNVSHADASENQINKEKLAQLAESNDQSLNQHPIQEGAYNYQ FNLNGKTYHFWSDGTYFKWEYYPSNGSTVNSANQNVASTQTAQNVSYQNNNYKNINQSAS TSNVSQHYANEAQTQQAPKTTQTKQATQTQQATQTQQAPANATTNQPKQSTSGSSVNVNS HLQQIAQRESGGDIHAINPSSGAAGKYQFLQSTWDSVAPAQYKGVSPAQAPESVQDAAAV KLYNTAGPSQWVTA >gi|312979652|gb|ACRM01000013.1| GENE 60 56631 - 57320 892 229 aa, chain + ## HITS:1 COG:SA1897 KEGG:ns NR:ns ## COG: SA1897 COG0819 # Protein_GI_number: 15927669 # Func_class: K Transcription # Function: Putative transcription activator # Organism: Staphylococcus aureus N315 # 1 225 1 225 229 282 62.0 4e-76 MSFSDELKQASKPIIEEIYNDGFIQDLLKGKLSKQAVRQYLRADASYLKEFTNLYALLIP KAPTMKEVKFLVEQIEFMLDGEVEAHEILADYINEPYEEIVKEKVWPPSGDHYIKHMYYH AYTHENAAYTIAAMAPCPYVYEVIAKWGLEDSNLNRDALTAKWFDFYSTEMAPLIEVFDR LLNELTEHCTEQEKREIKEAFLQSTVHERHFFNMAYIDEEWDFGGANHE >gi|312979652|gb|ACRM01000013.1| GENE 61 57313 - 58134 1076 273 aa, chain + ## HITS:1 COG:SA1896 KEGG:ns NR:ns ## COG: SA1896 COG0351 # Protein_GI_number: 15927668 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Staphylococcus aureus N315 # 1 273 1 273 276 423 77.0 1e-118 MNKPKIALTIAGTDPSGGAGVMADLKSFHACGVYGMAAITSIVAQNTKGVQHIHNLETSW VKEQLDSVFDDELPHAIKTGMIATHETMELIQTYLKNHSDIPYVIDPVMLAKSGDSLMDD ETKKHLQKTLLPLADVVTPNIPEAEEITGLKIDTEDNIRKAGHIFINEIGSKGVVIKGGH SADLNNAKDFLFTKDDVYTFEEKRFNTPHTHGTGCTFSAVITAELAKGKTIYEAVKKAKK FISLSIEHTPEIGQGRGPVNHFAYMKKVGLDDE >gi|312979652|gb|ACRM01000013.1| GENE 62 58127 - 58915 1010 262 aa, chain + ## HITS:1 COG:SA1895 KEGG:ns NR:ns ## COG: SA1895 COG2145 # Protein_GI_number: 15927667 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxyethylthiazole kinase, sugar kinase family # Organism: Staphylococcus aureus N315 # 1 262 1 262 263 351 69.0 9e-97 MNSLEKIRQENPLVVCYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAGALLINI GTLTKANEKDILEIGKIANQQGTPIVFDPVAVGASTYRKQFCESFLSEINVSVIKGNASE ILTLVDSNTTMKGTDGETDLDVVTIAKKAYEKYQTAIVITGREDVIIQDNQIVKLSNGSP LLAKITGAGCLLGSLVAGFLFRNTHPSLQVLEESVSYYNIAAEIAEKSEKVNGPGTFLSQ LLDEMYQLNYDTYKQFVKRKEV >gi|312979652|gb|ACRM01000013.1| GENE 63 58918 - 59556 751 212 aa, chain + ## HITS:1 COG:SA1894 KEGG:ns NR:ns ## COG: SA1894 COG0352 # Protein_GI_number: 15927666 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine monophosphate synthase # Organism: Staphylococcus aureus N315 # 1 211 1 211 213 259 60.0 2e-69 MFDSKSLQVYFICGTQDIIGDQNIKDVLKAALESGITLFQFREKGPNALVGDEKEALAKE LKTLCHEYKVPFLINDDVDLAEKIDADGIHVGQDDEIIASFANRFKNKIIGLSVGNVKEY QQSDLEHVDYIGVGPMYETSSKSDASAPVGPEMIATLKNINPSLPMVAIGGITEDNCELI AKEGADGVSVISVITHSQNIDKTVNKLKHYFK >gi|312979652|gb|ACRM01000013.1| GENE 64 59645 - 60514 1001 289 aa, chain + ## HITS:1 COG:SA1893 KEGG:ns NR:ns ## COG: SA1893 COG0706 # Protein_GI_number: 15927665 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YidC # Organism: Staphylococcus aureus N315 # 1 287 1 290 290 420 76.0 1e-117 MKKKALLPLLLGVMVFLAGCDYSKSSNRNGFFYNTFVEPMAKILHWLGHSVFHDDYGIAI IVLVLVIRIILLPFMLSNYKNSHMMREKMKIAKPEVEGVQEKVKRARTQEEKMAANQEMM EVYKKYDINPMKSALGCLPVLIQMPIVMGLYFVLRYRIGGGITEHPHFLWFNLVHPDIWI TIIAGVLYFIQAWVSSKQMPEEQRQMTYMMMIVSPIMIIWISLSSASALGLYWSVSAAFL IIQTFFANKHYEKVAKQEIGPMVEAHKENNSNKKGKNTQVVSKNNKKKK >gi|312979652|gb|ACRM01000013.1| GENE 65 60572 - 61219 632 215 aa, chain - ## HITS:1 COG:SA1892 KEGG:ns NR:ns ## COG: SA1892 COG1418 # Protein_GI_number: 15927664 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Staphylococcus aureus N315 # 1 215 1 215 215 218 54.0 1e-56 MNQAEQILLAKEYMYQFHKNDYSGHDIAHIERVTLLAKYIAKQEHQGDFLTIVLSALLHD VIDDKLTDKHHALSELHQFFKKIELDDTVQKNIIFIIKHLSYRNGRNNDVTLPIEGQIVR DADRLDAIGAIGIARTFQFSGHFNEPMWTESPYHSIPSEKDMVDLPPSAIRHFYDKLLKL KKLMHTQTGFQLAEERHQFMKLFLSQFYSEWHLEE >gi|312979652|gb|ACRM01000013.1| GENE 66 61254 - 62738 1344 494 aa, chain - ## HITS:1 COG:SA1891 KEGG:ns NR:ns ## COG: SA1891 COG1502 # Protein_GI_number: 15927663 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Staphylococcus aureus N315 # 1 494 1 494 494 764 77.0 0 MVEIVQLSFSHSSLIINIILITAFILNLIFAFIIIFMERRSAGSIWAWLLVLVFLPIVGF ILYLLLGRQIQRKHIFKLKKEDRKGLAMIVDEQLNALEKDDFSKGNHQIVKFKEMVHMLL YNNAAFLTTDNSIKIFTDGHAKFDALIEDIQNAKDYIHIQYYIFKSDDLGRRILKALEDR LEDGIEVKMLYDDMGSRTLRKKDLKQFKDKGGHAEAFFPSKLPLINLRMNNRNHRKIVII DGKIGYVGGVNVGDEYLGKDKKFGYWRDTHLRLEGDSVNALELRFILDWNSQSTRDNIRY EDRYFPDVDSGGEIGVQIASSGPDEDWEQIKYGYLKMIMSAKHSIYIQSPYFIPDQAFID AIKIAALGGVEVNLMIPCKPDHPFVYWATLKNAASLLDAGVKIYQYNNGFLHSKTLIVDD EIATVGTANMDNRSFSLNFEVNAFIYDEDISLQLKKAFIKDMKVSYELTKELYNQRSTWI KFKEGISQLLSPIL >gi|312979652|gb|ACRM01000013.1| GENE 67 62904 - 63197 253 97 aa, chain + ## HITS:1 COG:SA1890 KEGG:ns NR:ns ## COG: SA1890 COG1937 # Protein_GI_number: 15927662 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 97 1 97 97 134 84.0 6e-32 MENQNHAHHSEQVKLNLKSRLNRIEGQVKAINRMIDEDVYCDDVLTQIRATRSALNSVAT KLLEHHMKSCIMEKINQGTEEEAMEELLVTFQKLVKD >gi|312979652|gb|ACRM01000013.1| GENE 68 63213 - 63422 301 69 aa, chain + ## HITS:1 COG:no KEGG:SAR2174 NR:ns ## KEGG: SAR2174 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_MRSA252 # Pathway: not_defined # 1 68 1 68 69 67 55.0 2e-10 MLNSNIVFIDNIETEEQAQMLNERLLNMIGVHTVSIDIERNKINVEYETPTNLNSIEKEI YDAGFKVLS >gi|312979652|gb|ACRM01000013.1| GENE 69 63535 - 63672 119 45 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNKSDKLQNVVKLLSSLGVNIKKTKSRFDIINTLPTTKTVTQELK >gi|312979652|gb|ACRM01000013.1| GENE 70 63833 - 65017 1231 394 aa, chain - ## HITS:1 COG:SA1888 KEGG:ns NR:ns ## COG: SA1888 COG0772 # Protein_GI_number: 15927659 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Staphylococcus aureus N315 # 1 387 1 387 400 518 77.0 1e-147 MKYSSRQQPTTHWLRKIDWILIALIMILAIISVTTISSAMGGGQYSANFGIRQIIYYILG AILALIVMIFSPKKIKNNTYIWYIFFCILLLGLLIIPETPITPIINGAKSWYAFGPISIQ PSEFMKIILILALAKIVSNHNRFTFNKSFRTDLILFFKIIGISLVPMILILLQNDLGTTL VLCAIIVGIMLVSSITWRILAPIFITVAILGSSIILAIIYKPSLIEKTLHIKMYQMGRIN SWLNPYAYSNGDGYHLTESLKAIGSGQLFGKGYNHGEVYIPENHTDFIFSVIGEEIGFIG AVILLLIFLALIFHLIRLAIKTTSSFNKVFLIGYISLLVFHILQNIGMTIQLLPITGIPL PFISYGGSALWSLMLGIGVILSIYYHQKPASKDA >gi|312979652|gb|ACRM01000013.1| GENE 71 65391 - 66461 1411 356 aa, chain + ## HITS:1 COG:SA1887 KEGG:ns NR:ns ## COG: SA1887 COG1181 # Protein_GI_number: 15927658 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: D-alanine-D-alanine ligase and related ATP-grasp enzymes # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 610 84.0 1e-174 MVKENICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIK TIEELHLEDISPGEITLLLKENGEGNKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNG VLAASSSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPAN LGSSVGISKCNNEDELKKGIEEAFQFDRKLVIEQGVIAREVEVAVLGNDYPETTWPGEVI KDVQFYDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTEDN QIYINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLAKERYEDKKKNKYTID >gi|312979652|gb|ACRM01000013.1| GENE 72 66477 - 67832 1568 451 aa, chain + ## HITS:1 COG:SA1886 KEGG:ns NR:ns ## COG: SA1886 COG0770 # Protein_GI_number: 15927657 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide synthase # Organism: Staphylococcus aureus N315 # 1 451 1 451 452 639 71.0 0 MIEVSLKQIQKWISCDIDEAYLEHQIKGVTIDSRHVEKEMLFVPFKGENVDGHRFVEQAL KSGAGASFYEKGQDISDSIQGPIIWVDDTLTALQQLAKAYLKHVNPKVIGVTGSNGKTTT KDMIESVLHTEFRVKKTQGNYNNEIGLPLTILQLDKDTEISILEMGMSGFHEIELLSKIA EPDIAVITNIGESHMQDLGSREGIAKAKSEITIGLKSDGTFIYDGDEPLLKPHVENVKNA KLVSVGLNHENTLVCKVENSKNDGIAFMINNKEHYELPILGIHNMKNATIAIAIGHELGL DYNTIQKNISNVQLTGMRMERHVTDNQITVINDAYNASPTSMKAAIDTLSHMNGRKIIVL ADSLELGENSQRMHEDVGTYLDNKGIHTLLTYGNDAKFISRTGGQFVEDVAYFSDKNELT HYLKSILQPDDKVLIKGSRGNKLEEVVNALI >gi|312979652|gb|ACRM01000013.1| GENE 73 68064 - 69575 1906 503 aa, chain + ## HITS:1 COG:SA1885 KEGG:ns NR:ns ## COG: SA1885 COG0513 # Protein_GI_number: 15927656 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 1 503 1 506 506 779 84.0 0 MQNFKELGISDKTVKTLEEMGFKEPTPIQKESIPYTLEGKDILGQAQTGTGKTGAFGIPL IEKVVGKSGVQALILAPTRELAMQVAEQLREFSRGQNIQVVTVFGGMPIDRQIKALKRGP QIVVGTPGRVIDHLNRRTLKTNDIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTML FSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDEYYTIVKELEKFDTFTNFLDVHQP ELAIVFGRTKRRVDELTSALLTKGYKAEGLHGDITQAKRLEVLKKFKNDQIDILVATDVA ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEEVND RRMKALRPPHRKEVLKAREEDIKDKVKNWMSRESEDRLKRISSELLEEYDSTELVASLLQ ELVEANDEVEVQLTFEKPLARKSRNNKGNQSRRGGKRNNKFNNKNKRSKGNFNKKKGKKQ DRRDRQDKRKTSIKGRTFADLQK >gi|312979652|gb|ACRM01000013.1| GENE 74 69824 - 70303 247 159 aa, chain + ## HITS:1 COG:no KEGG:SH0957 NR:ns ## KEGG: SH0957 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 159 1 159 159 132 50.0 4e-30 MQLHHSFHKSPKSAFLYHWLVSGVTLLIELIILGGGLYCWKAFHWPHFIFYILLVLTICS FIRFILQPINRYSYRFYNIENNNIEILNTFIFKSYKTTKIERLQLLKVKTNPLLKKFNLK RVIVVTAGHELTTPFVSNKEAERLILHILSQMRGSNDDI >gi|312979652|gb|ACRM01000013.1| GENE 75 70293 - 71795 1154 500 aa, chain + ## HITS:1 COG:SA1877 KEGG:ns NR:ns ## COG: SA1877 COG3428 # Protein_GI_number: 15927648 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 4 500 3 525 527 389 43.0 1e-108 MIFKPQKLHPISYFTGLIDVIKQNIFVIIVFIGFNIWNFDFTNIRHYIGPGIFLLIILFS MINQFQKVRLTRYWIENDQFIVTSGWLNKKRKELNLNRIQSLDTTQGLLNQLVGGVRLQI KTPSDGIELETISKQQSELIERTIKKRQLQLDSQEIEPDNKPNNSEQELISEDSSNNEVI FKMSNKLLIFMALTSGVIGVAFATISPIIGAFEDVIPWEKWTSRLFQWIQSVTFLVTIII LTVLIFCYVIGTLIVVLRYYNYTITQRDNELKITYGLLNVKNITVPIERLQAVVEKQSFI RKLFGYTSIYFIITSDLEVKSNEDVSENGKIMILPFINKKEAYSIIRKLIPEMQFNAITE NVPKRGYHRHFFIPSIILILGATIGAYYWSVWSYMIAIIIIIFMAIYAYVYISASGLCNR KNEIALRQVSMMHINSYYFKKNKIIGMNVNQNPLLEKSHLAHLHFIIAKGAVNEDIKLKY ASEKQVQLNIETYLGGSKIE >gi|312979652|gb|ACRM01000013.1| GENE 76 71788 - 72267 248 159 aa, chain + ## HITS:1 COG:SA1876 KEGG:ns NR:ns ## COG: SA1876 COG3402 # Protein_GI_number: 15927647 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 154 1 155 163 92 36.0 2e-19 MSEHSFMNTSGLKVMRITSLIGLIIITAFLFLLNMIDVYFTHISKLSINIIVSIVIILLY IILCIIVIPLLRYHYFSYYYDENEIHIRKGIIIVETDIIPFYRIQNIEVIEGFIMRKYKL AHLHLSTAGGECNIELIAKKEAIYLKQMIQNRKHELYEL >gi|312979652|gb|ACRM01000013.1| GENE 77 72292 - 72645 420 117 aa, chain + ## HITS:1 COG:SA1875 KEGG:ns NR:ns ## COG: SA1875 COG0736 # Protein_GI_number: 15927646 # Func_class: I Lipid transport and metabolism # Function: Phosphopantetheinyl transferase (holo-ACP synthase) # Organism: Staphylococcus aureus N315 # 1 117 1 116 119 177 77.0 4e-45 MIHGIGIDLIEIDRIKDVYIKQSDKLIHRILTDQEQQKFNSFKNDKRKLEFLAGRFATKE AFSKALGTGLGKTVAFNDIDCYNDEKGKPCIEYPGFIVHVSITHTQHYAMSEVILEK >gi|312979652|gb|ACRM01000013.1| GENE 78 72688 - 73833 1203 381 aa, chain + ## HITS:1 COG:SA1874 KEGG:ns NR:ns ## COG: SA1874 COG0787 # Protein_GI_number: 15927645 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Staphylococcus aureus N315 # 1 380 1 381 382 486 62.0 1e-137 MSDVAYRPTYLNVDLDAILYNYNIFKTLQSDKLVIPVIKANGYGLGSVKIAEILENNGAQ FFAVATLDEAIELRLHNINAKLLVLGAISPKDINKAIQYDITLTVPSQFWLERAIHYIED NSDHVYLHVKLDTGMGRLGIKTLEEYQLVINLIKEHPTLIFDGVFTHFANADEPGDSMKQ QYAFFEELVTKAERPKYIHAQNSAGALLANCKLCNALRLGISLYGYYPSEYVRNEVDVQL KPSAKLMTQVVQTKYLNPGDSVSYGSTFTATEKMKIAVLPIGYADGFLRAMQGFAVNVNQ HQCEIIGRVCMDQMIISVPDDVKEGDEVILIDNNLNSSQAVEALAIKQNTINYEVLCNLG RRLPRIYYLNKKFEVTNELLN >gi|312979652|gb|ACRM01000013.1| GENE 79 73919 - 74089 203 56 aa, chain + ## HITS:1 COG:no KEGG:SH0962 NR:ns ## KEGG: SH0962 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 56 1 56 56 84 92.0 1e-15 MLTFNQNRSHSLEQSLKEGYVQMADLNLSLATEAFPLECEACDCNESYLTSNYKSE >gi|312979652|gb|ACRM01000013.1| GENE 80 74086 - 74448 404 120 aa, chain + ## HITS:1 COG:SA1873 KEGG:ns NR:ns ## COG: SA1873 COG2337 # Protein_GI_number: 15927643 # Func_class: T Signal transduction mechanisms # Function: Growth inhibitor # Organism: Staphylococcus aureus N315 # 1 120 1 120 120 196 93.0 7e-51 MIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVE IEKKKYRLDKDSVILLEQIRTLDKKRLKEKLTYLSEDKMKEVDDALDISLGLHDVCPQKN >gi|312979652|gb|ACRM01000013.1| GENE 81 74820 - 75821 1245 333 aa, chain + ## HITS:1 COG:SA1872 KEGG:ns NR:ns ## COG: SA1872 COG2208 # Protein_GI_number: 15927642 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Serine phosphatase RsbU, regulator of sigma subunit # Organism: Staphylococcus aureus N315 # 1 333 1 333 333 533 81.0 1e-151 MEEFKKNYKQLIDESLVTKNKEQFLKKCDEFTEEVIKKDILPEDVVDLHKTYIASLNLKT SQILDTLDVLEEVVKGFGYSYRDYQNLVDKMQFHDKEIDLASRLQQTMLKTDIPQFDSIQ IGVISVAAQKVSGDYFNLIDHRDGTMSFAVADVIGKGIPAALAMSMIKFGMDSYGHSQLP SDGLKRLNRVVEKNVNQNMFVTMFYGLYEEMNHLLYCSSAGHEPGYIYRAETETFEEIEV RGRVLGVSQHTRYSQQEIPIYLDDLIIIFTDGVTEARNKKGEFIAKDTVLNLIRKYKHMH PQDIVQILYEAILKIQNTQKRDDMTILIIKRVN >gi|312979652|gb|ACRM01000013.1| GENE 82 75907 - 76233 507 108 aa, chain + ## HITS:1 COG:SA1871 KEGG:ns NR:ns ## COG: SA1871 COG1366 # Protein_GI_number: 15927641 # Func_class: T Signal transduction mechanisms # Function: Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) # Organism: Staphylococcus aureus N315 # 1 108 1 108 108 169 87.0 9e-43 MNLNIETITHDDYYEVIVGGELDVYTVPELEEVLVPMRQEGNHDIHVNLANVSYMDSTGL GLFVGTLKALNQNDKELYILGVTDRISRLFDITGLKDLMHVNEGTEVE >gi|312979652|gb|ACRM01000013.1| GENE 83 76235 - 76714 595 159 aa, chain + ## HITS:1 COG:SA1870 KEGG:ns NR:ns ## COG: SA1870 COG2172 # Protein_GI_number: 15927640 # Func_class: T Signal transduction mechanisms # Function: Anti-sigma regulatory factor (Ser/Thr protein kinase) # Organism: Staphylococcus aureus N315 # 1 159 1 159 159 230 79.0 1e-60 MSLKNDYIEMKLPASAEYVSLIRLTLSGVFTRAGASYDDIEDSKIAVSEAVTNAVKHAYK HSEQNGMINICFELFDDKIKIIISDQGESFDYESTKSKLGPYQENENIDFLREGGLGLFL IESLMDEVKVSKESGVTISMIKYIKKEQVPNNDERVEIS >gi|312979652|gb|ACRM01000013.1| GENE 84 76689 - 77459 885 256 aa, chain + ## HITS:1 COG:SA1869 KEGG:ns NR:ns ## COG: SA1869 COG1191 # Protein_GI_number: 15927639 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 413 91.0 1e-115 MTKESKSVNEISPEQINQWIKEHQDNINPHAQDKLVKHYRKLIESLAYKYSKGQSHHEDL VQVGMVGLIGAINRFDISFDRKFEAFLVPTVIGEIKRYLRDKTWSVHVPRRIKEIGPRIK KVGDELTNELGRSPSILEIANRLEVNEEEVLEAMEMGQSYNALSVDHSIEADKDGSTVTL LDIMGQQDDNYDLTEKRMILERILPILSDREREIIQCTFIEGLSQKETGERIGLSQMHVS RLQRTAIRKLQQAARQ >gi|312979652|gb|ACRM01000013.1| GENE 85 77586 - 79733 952 715 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|87310993|ref|ZP_01093118.1| ribosomal protein S1-like RNA-binding domain protein [Blastopirellula marina DSM 3645] # 191 638 312 769 1043 371 42 1e-102 MEKTLINDIVKKYQFLEKQVIAVLNLLEENNTVPFIARYRKEATGGLDEVQIKQISDEYQ YVAHLQKRKEEVIHNIEQQGLLTNELKQDILQQTKLQRVEDLYRPFKQKKKTRATEAKRK GLAPLAHFLIEGQSMNVHEEARKYLSEEVKTVDEAIQGAQDIIAERISDNPKYRQRLLKD VYYQGKIVTTKKKQANDEKEIFSMYYNYSEPIKRIANHRILAMNRGEKEKVLSIKIEFDT TSIETFIQSQEVKKAHQLVEYIESAIKDSLKRLIMPSIEREIRNDLTEKAEHHAIEVFSE NLKHLLLQPPMKGKQILGIDPAFRTGCKLAVINPFGTFIAKSVIYPHPPKSKIELAEKEL VRMITENNVELIAIGNGTASRETEQFVANVIKKYQLNAQFIIVNEAGASVYSASEIARNE FPEFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKELEQALTFVVETAVN QVGVDVNTASKSLLQYVSGLSSTIAQNIIDYREENGSIKHHSEISKVKRLGSKTFEQSIG FLRIVNGKEPLDNTSIHPESYQATYQFLESLQLSIDDLGSDKLKQTLSDINIEEKSNEIG IGKPTLEDIVKSLKTPNRDPRDSYETPQLKSDILSIEDLSKGMKLSGTVRNVVDFGAFVD IGVKQDGLVHISKLSKKYVKNPMDIISVGDIVDVWILNIDKNKEKVALTMINPNE >gi|312979652|gb|ACRM01000013.1| GENE 86 77586 - 79733 197 715 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|227411819|ref|ZP_03895019.1| SSU ribosomal protein S1P [Eggerthella lenta DSM 2243] # 639 715 204 279 405 80 50 3e-14 MEKTLINDIVKKYQFLEKQVIAVLNLLEENNTVPFIARYRKEATGGLDEVQIKQISDEYQ YVAHLQKRKEEVIHNIEQQGLLTNELKQDILQQTKLQRVEDLYRPFKQKKKTRATEAKRK GLAPLAHFLIEGQSMNVHEEARKYLSEEVKTVDEAIQGAQDIIAERISDNPKYRQRLLKD VYYQGKIVTTKKKQANDEKEIFSMYYNYSEPIKRIANHRILAMNRGEKEKVLSIKIEFDT TSIETFIQSQEVKKAHQLVEYIESAIKDSLKRLIMPSIEREIRNDLTEKAEHHAIEVFSE NLKHLLLQPPMKGKQILGIDPAFRTGCKLAVINPFGTFIAKSVIYPHPPKSKIELAEKEL VRMITENNVELIAIGNGTASRETEQFVANVIKKYQLNAQFIIVNEAGASVYSASEIARNE FPEFQVEERSAVSIGRRVQDPLSELVKIDPKSIGVGQYQHDVNQKELEQALTFVVETAVN QVGVDVNTASKSLLQYVSGLSSTIAQNIIDYREENGSIKHHSEISKVKRLGSKTFEQSIG FLRIVNGKEPLDNTSIHPESYQATYQFLESLQLSIDDLGSDKLKQTLSDINIEEKSNEIG IGKPTLEDIVKSLKTPNRDPRDSYETPQLKSDILSIEDLSKGMKLSGTVRNVVDFGAFVD IGVKQDGLVHISKLSKKYVKNPMDIISVGDIVDVWILNIDKNKEKVALTMINPNE >gi|312979652|gb|ACRM01000013.1| GENE 87 79738 - 80178 199 146 aa, chain + ## HITS:1 COG:SA1867 KEGG:ns NR:ns ## COG: SA1867 COG3091 # Protein_GI_number: 15927637 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 2 146 6 150 151 177 62.0 4e-45 MLQKLVETTSLDHFNQPFKHKAYFNSRLRTTGGRYVLSTHHIEINPKQFSCFGKDALINI IKHELCHYHLHISGKGYQHKDHDFKMLSNKVQAPRFCQPIQSYEERANYIYQCCKCKTTY LRIRKVNIDKMRCGKCGSKLKLKMYL Prediction of potential genes in microbial genomes Time: Sun May 29 09:19:37 2011 Seq name: gi|312979651|gb|ACRM01000014.1| Staphylococcus hominis subsp. hominis C80 cont1.14, whole genome shotgun sequence Length of sequence - 28632 bp Number of predicted genes - 28, with homology - 27 Number of transcription units - 12, operones - 5 average op.length - 4.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) + 5S_RRNA 2 - 62 100.0 # AF142677 [R:48033..48709] # 5S ribosomal RNA # Bacillus megaterium # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. + 5S_RRNA 236 - 350 99.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. - Term 464 - 512 9.1 1 1 Op 1 2/0.333 - CDS 521 - 1789 1508 ## COG1171 Threonine dehydratase 2 1 Op 2 30/0.000 - CDS 1802 - 2371 767 ## COG0066 3-isopropylmalate dehydratase small subunit 3 1 Op 3 10/0.000 - CDS 2375 - 3745 1814 ## COG0065 3-isopropylmalate dehydratase large subunit 4 1 Op 4 11/0.000 - CDS 3763 - 4806 1168 ## COG0473 Isocitrate/isopropylmalate dehydrogenase 5 1 Op 5 5/0.000 - CDS 4806 - 6338 1716 ## COG0119 Isopropylmalate/homocitrate/citramalate synthases 6 1 Op 6 15/0.000 - CDS 6359 - 7363 1492 ## COG0059 Ketol-acid reductoisomerase - Prom 7384 - 7443 4.2 7 1 Op 7 32/0.000 - CDS 7489 - 7728 234 ## COG0440 Acetolactate synthase, small (regulatory) subunit 8 1 Op 8 6/0.000 - CDS 7725 - 9443 2184 ## COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 9 1 Op 9 . - CDS 9462 - 11150 1887 ## COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase - Prom 11175 - 11234 8.1 - Term 11174 - 11220 4.5 10 2 Tu 1 . - CDS 11270 - 11347 94 ## - Prom 11407 - 11466 14.1 11 3 Op 1 12/0.000 + CDS 11593 - 12054 422 ## COG0802 Predicted ATPase or kinase 12 3 Op 2 20/0.000 + CDS 12035 - 12700 714 ## COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone 13 3 Op 3 9/0.000 + CDS 12673 - 13137 364 ## PROTEIN SUPPORTED gi|126651456|ref|ZP_01723660.1| ribosomal protein (S18)-alanine acetyltransferase 14 3 Op 4 . + CDS 13130 - 14155 742 ## PROTEIN SUPPORTED gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase + Term 14161 - 14220 8.3 - Term 14433 - 14481 9.7 15 4 Tu 1 . - CDS 14491 - 16428 2182 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 16490 - 16549 9.7 + Prom 16441 - 16500 7.9 16 5 Tu 1 1/1.000 + CDS 16675 - 17313 718 ## COG2344 AT-rich DNA-binding protein + Term 17333 - 17370 1.0 + Prom 17316 - 17375 11.7 17 6 Op 1 10/0.000 + CDS 17454 - 18545 1463 ## COG2391 Predicted transporter component 18 6 Op 2 1/1.000 + CDS 18563 - 18787 383 ## COG0425 Predicted redox protein, regulator of disulfide bond formation + Prom 18820 - 18879 5.2 19 7 Tu 1 . + CDS 18904 - 20142 1354 ## COG0004 Ammonia permease + Term 20197 - 20235 -0.1 + Prom 20158 - 20217 7.1 20 8 Op 1 4/0.333 + CDS 20397 - 21884 1713 ## COG1621 Beta-fructosidases (levanase/invertase) 21 8 Op 2 . + CDS 21885 - 22856 1104 ## COG0524 Sugar kinases, ribokinase family + Term 22861 - 22898 2.2 - Term 22841 - 22892 4.4 22 9 Op 1 9/0.000 - CDS 22895 - 23611 447 ## COG3279 Response regulator of the LytR/AlgR family 23 9 Op 2 . - CDS 23624 - 24913 833 ## COG2972 Predicted signal transduction protein with a C-terminal ATPase domain 24 9 Op 3 . - CDS 24935 - 25075 299 ## gi|228474467|ref|ZP_04059201.1| conserved hypothetical protein 25 9 Op 4 . - CDS 25078 - 25644 583 ## COG4512 Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide - Prom 25751 - 25810 7.4 - Term 26302 - 26340 4.3 26 10 Tu 1 1/1.000 - CDS 26346 - 27131 857 ## COG0388 Predicted amidohydrolase - Prom 27157 - 27216 5.5 - Term 27183 - 27243 14.6 27 11 Tu 1 . - CDS 27262 - 27885 854 ## COG3560 Predicted oxidoreductase related to nitroreductase - Prom 27905 - 27964 5.0 + Prom 27979 - 28038 11.6 28 12 Tu 1 . + CDS 28063 - 28593 756 ## gi|228474464|ref|ZP_04059198.1| conserved hypothetical protein Predicted protein(s) >gi|312979651|gb|ACRM01000014.1| GENE 1 521 - 1789 1508 422 aa, chain - ## HITS:1 COG:SA1866 KEGG:ns NR:ns ## COG: SA1866 COG1171 # Protein_GI_number: 15927636 # Func_class: E Amino acid transport and metabolism # Function: Threonine dehydratase # Organism: Staphylococcus aureus N315 # 1 422 1 422 422 682 83.0 0 MVLKTTVTATDVDEAYLRIKDVVKETPLQYDHYLSQKYNCNVYLKREDLQWVRSFKLRGA YNAISVLDTQAKSKGITCASAGNHAQGVAYTAKALNLKAVIFMPVTTPLQKVNQVKFFGA ENVEIVLTGDTFDDCLKEALVYTDEHHMTFIDPFNNIYTIAGQGTLAKEILLEAKKEMIQ FDYLFAAIGGGGLISGVSTYMHEHSPHTQIIGVEPAGASSMYESVVVQNKVVTLEHIDKF VDGASVARVGDITFNIVKQYVNDYLQIDEGAVCSTILDMYSKQAIVAEPAGALSVSALEF YKDNIIGKTVVCVVSGGNNDINRMKEIEERSLLYEEMKHYFILNFPQRPGALKEFVNDVL GPQDDITKFEYLKKASQNTGTVIIGIQLNNHQDLEQLKHNVDEFDPSNIYINENKMLYSL LI >gi|312979651|gb|ACRM01000014.1| GENE 2 1802 - 2371 767 189 aa, chain - ## HITS:1 COG:SA1865 KEGG:ns NR:ns ## COG: SA1865 COG0066 # Protein_GI_number: 15927635 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase small subunit # Organism: Staphylococcus aureus N315 # 3 189 4 190 190 325 80.0 3e-89 MDIQPITQYTGKVVPLFNDNIDTDQIIPKVHLKRITKTGFGPFAFDEWRYLPDGSDNPDF NLNKPKYKGASILITGDNFGCGSSREHAAWALKDFGFNIIIAGGFSDIFYMNCTKNGMLP IVLNEQSRKYLANQNNITVDLPNQTVSANNQSFHFDIDETWKDKLINGLDDIAITLKYEE LIEKYEKTM >gi|312979651|gb|ACRM01000014.1| GENE 3 2375 - 3745 1814 456 aa, chain - ## HITS:1 COG:SA1864 KEGG:ns NR:ns ## COG: SA1864 COG0065 # Protein_GI_number: 15927634 # Func_class: E Amino acid transport and metabolism # Function: 3-isopropylmalate dehydratase large subunit # Organism: Staphylococcus aureus N315 # 1 456 1 456 456 850 88.0 0 MAQTLFDKVWNKHVLTGKEGEPQLLYIDLHLIHEVTSPQAFEGLRLQKRQLRRPDLTFAT LDHNVPTIDIFNIRDEIANKQITTLQKNAKDFGVHIFDMGSDEQGIVHMVGPETGLTQPG KTIVCGDSHTATHGAFGAIAFGIGTSEVEHVFATQTLWQTKPKNLKIEVSGKLQPGVYAK DIILHLINQYGVDFGTGYALEFTGETIQSLSMEGRMTICNMAIEGGAKYGIIQPDETTFE YIKGRPYAQNFNQSIGEWQKLYSDENAHFDKVITLDVTNLEPQVTWGTNPEMGVNFSSPF PEIQNINDERAYNYMGLKPGQKAEDIDLGYVFLGSCTNARLSDLIEASHIVKGKKVHPKI TAIVVPGSRTVKKEAESLGLDKVFKEAGFEWREPGCSMCLGMNPDQVPEGVHCASTSNRN FEGRQGKGARTHLVSPAMAAAAAINGKFVDVRKVVV >gi|312979651|gb|ACRM01000014.1| GENE 4 3763 - 4806 1168 347 aa, chain - ## HITS:1 COG:SA1863 KEGG:ns NR:ns ## COG: SA1863 COG0473 # Protein_GI_number: 15927633 # Func_class: C Energy production and conversion; E Amino acid transport and metabolism # Function: Isocitrate/isopropylmalate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 344 1 344 348 531 75.0 1e-151 MTYKIVALPGDGIGPEILNGSLELLEIISKKYNFTYNLKSYEFGGAAIDTHGTPLPNETL SACQEADAILLGAVGGPKWTDPNNRPEQGLLALRKKLGLFANIRPTKVTEGTSQFSPLKE ARVKHTDLVIVRELTSGIYFGEPRHINHSEALDSLIYTKAEIERIAKVAFELARTRNKKV TSVDKENVLASSKLWRKTVTEVSKSYPDIELNHLLVDACSMHLITHPSQFDVIVTENLFG DILSDEASVIPGSLGLSPSASFSEHGTRLYEPIHGSAPDIANQNLANPFGMVLSLAMCLR ESLNQSVAAEELEDAVYHLIKIGKTTKDLGGHYKTSEIFELLKKSYQ >gi|312979651|gb|ACRM01000014.1| GENE 5 4806 - 6338 1716 510 aa, chain - ## HITS:1 COG:SA1862 KEGG:ns NR:ns ## COG: SA1862 COG0119 # Protein_GI_number: 15927632 # Func_class: E Amino acid transport and metabolism # Function: Isopropylmalate/homocitrate/citramalate synthases # Organism: Staphylococcus aureus N315 # 1 509 1 509 509 818 83.0 0 MESHIQIFDTTLRDGEQTPGVNFSFDERLSIAKQLEKWGVDVIEAGFPASSTGSFKSVEA ISKALTTTAVCGLARCKKSDIDAVYEATKCATKPRVHVFIATSPIHLEHKLKMTQEEVLE SIKEHVSYAKSLFDVVQFSPEDASRTDQAFLIKSVQTAVDAGATIINIPDTVGYSYPSEY GAIFKSLITNVKSEKEIIYSAHCHDDLGMAVANSLAAIENGAKRIEGTVNGIGERAGNTA LEEIALALYVRKDHYGIETKLKLEQTKLTSELISRYAGIRVPRNKAIVGQNAFSHESGIH QDGVLKNPETYEIMTPQLVGISKNELPLGKLSGKHAFAEKLKTLGYDIEPKQQIELFKQF KAVADKKKSVSDRDIHAMIQGSEHEQNAIYQVETLQLQYVSNGLQSAVVVIKDKKGHIYQ DSSIGTGSIVAIYNAVDRIFKKDSELIDYRIDSVTEGTDAQAEVHVELVIENQHVNGIGI DHDILQASCKAYVEAHAKYIAQDLEKVGNK >gi|312979651|gb|ACRM01000014.1| GENE 6 6359 - 7363 1492 334 aa, chain - ## HITS:1 COG:SA1861 KEGG:ns NR:ns ## COG: SA1861 COG0059 # Protein_GI_number: 15927631 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Ketol-acid reductoisomerase # Organism: Staphylococcus aureus N315 # 1 334 1 334 334 572 88.0 1e-163 MTKVYYDQSVEKDALQGKKIAIIGYGSQGHAHAQNLKDNGYDVRVGIRPGNSFNKAKEDG LDVYPVAEAVKQADVIMVLLPDEIQGNVYKNEIAPNLEAGNALAFAHGFNIHFNVIEPPK DVDVFLVAPKGPGHLVRRTFVEGSAVPALFGVQQDATGHARDIALSYAKGIGATRAGVIE TTFKEETETDLFGEQAVLCGGIHKLIQSGFETLVEAGYQKELAYFEVLHEMKLIVDLMYE GGMENVRYSISNTAEFGDYVSGPRVITPDVKDNMKEVLKDIQNGNFANRFVKDNENGFKE FYELREQQHGHEIEAVGRELRKMMPFIKSKSIQK >gi|312979651|gb|ACRM01000014.1| GENE 7 7489 - 7728 234 79 aa, chain - ## HITS:1 COG:SA1860 KEGG:ns NR:ns ## COG: SA1860 COG0440 # Protein_GI_number: 15927630 # Func_class: E Amino acid transport and metabolism # Function: Acetolactate synthase, small (regulatory) subunit # Organism: Staphylococcus aureus N315 # 1 75 1 75 84 76 61.0 9e-15 MNRTLKLKVADQVSTLNRITSAFVRLQYNINELYVKPASEDGISDMTIKVHIEDEDVYRI LITKLKKQVSVINIEDVND >gi|312979651|gb|ACRM01000014.1| GENE 8 7725 - 9443 2184 572 aa, chain - ## HITS:1 COG:SA1859 KEGG:ns NR:ns ## COG: SA1859 COG0028 # Protein_GI_number: 15927629 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] # Organism: Staphylococcus aureus N315 # 17 571 35 589 589 912 78.0 0 MSKTKESNKQTETLTTRSGSDLLVEALVHEDVDFIFGYPGGAVLPLYDTFYDEKIKHILA RHEQGATHAAEGYARVSGKPGVVVVTSGPGATNAITGITDAYCDSLPLVVFTGQVATPGI GKDAFQEADLLSMTTPITKANYQVKHVDDIPRIVHEAFYLANTGRKGPVVIDFPKDMGVL TSSAPLEEEVHLPSYQVTENPNKEDIQQLSQYLNHAKKPVVLAGAGINHSKSNALLTEFV TQHQIPVVTTLLGLGAISYENPLFLGMGGMHGSYASNMALTECDLLINLGSRFDDRLASN PNEFAPNAKVVHIDIDESEINKVIPTTLGIVADCKKVLEALVTEHHSHATYKEWVDHCLD NKSKHPFKYKEANDTFCRPQEAIEYIGKITNGEAIVTTDVGQHQMWSAQFYPFKHHSQWV TSGGLGTMGFGIPSAIGAQLAAPDKTVVCFVGDGGFQMTNQEMALLPEYHLNVKIVLINN GTLGMVKQWQDKFFNQRFSHSVFNDQPDFIKMAEAYGVKSFLIDHPNKLKAQLDEAFNYE GPALIEVRISPAEPVNPMIPSGKANHEMEGLE >gi|312979651|gb|ACRM01000014.1| GENE 9 9462 - 11150 1887 562 aa, chain - ## HITS:1 COG:SA1858 KEGG:ns NR:ns ## COG: SA1858 COG0129 # Protein_GI_number: 15927628 # Func_class: E Amino acid transport and metabolism; G Carbohydrate transport and metabolism # Function: Dihydroxyacid dehydratase/phosphogluconate dehydratase # Organism: Staphylococcus aureus N315 # 1 562 1 562 562 1058 93.0 0 MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYIDIVPGHVHLRELADIAK EAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPN CDKITPGMLLAAVRTNVPAIFCSGGPMKAGLSAQGKALTLSSMFEAVGAFKEGSITKEEF LDMEQNACPTCGSCAGMFTANSMNCLMEVLGLALPYNGTALAVSDQRREMIRQAAFQLVE NIKNDIKPRDIVTKEAIDDAFALDMAMGGSTNTVLHTLAIANEAGIEYDLERINEIAKKT PYLSKIAPSSSYSMHDVHEAGGCPAIINELMKKEGTLHPDRLTVTGKTLRENNQGKEIKN FDVSHSLDAPYDKEGGLSVLFGNIAPKGAVIKVGGVDPSIKVFKGKAICFDSHDAAVEAI DNKTVREGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAV GHISPEAASGGPIGLIRDGDEITIDLVNRTLDVNQPQEELYKRKEELEPFKAKVKTGYLA RYTALVTSANTGGIMQVPENLI >gi|312979651|gb|ACRM01000014.1| GENE 10 11270 - 11347 94 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQSFTYSLSPLENLIILLYSSGLEL >gi|312979651|gb|ACRM01000014.1| GENE 11 11593 - 12054 422 153 aa, chain + ## HITS:1 COG:SA1857 KEGG:ns NR:ns ## COG: SA1857 COG0802 # Protein_GI_number: 15927627 # Func_class: R General function prediction only # Function: Predicted ATPase or kinase # Organism: Staphylococcus aureus N315 # 1 153 1 153 153 211 69.0 3e-55 MIPIKNLDEMEHFAKILMKHVGSKDVILLNGDLGAGKTTLTQFIGKYLGVKRNINSPTFN IIKSYKGKELKLHHMDCYRLEDSDEDLGFNEYFEDDAVTIIEWSQFIQEFLPEEYLVINI TTINENQRQINIAAKGYHYTKIKEEIDNELTVN >gi|312979651|gb|ACRM01000014.1| GENE 12 12035 - 12700 714 221 aa, chain + ## HITS:1 COG:SA1856 KEGG:ns NR:ns ## COG: SA1856 COG1214 # Protein_GI_number: 15927626 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Inactive homolog of metal-dependent proteases, putative molecular chaperone # Organism: Staphylococcus aureus N315 # 1 221 10 229 229 284 65.0 1e-76 MNLLLIDTSNQPMSIALMNDDEVLAIKTTNSKKDHSSQLMPSIQSLFNESNLKKQELDGI VIAKGPGSYTGVRIGVTVAKTLAYALNTKLYGVSSLKALAATIDTNDKRIIVPIFDARRE AVYTGLYQYENNQLNTIEKDQYISLEALHKKLNDLNQPYVFVGEDTEKLSELLHGDIEAK LPNATVMKHLIHQPENIHTFVPNYIKLSEAERNWLNQQKNS >gi|312979651|gb|ACRM01000014.1| GENE 13 12673 - 13137 364 154 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|126651456|ref|ZP_01723660.1| ribosomal protein (S18)-alanine acetyltransferase [Bacillus sp. B14905] # 14 152 1 141 141 144 53 5e-34 MVKPTEEQLTIRAMQVDDVPSVFDIERESFNDSSWTIDAFYHELNENNFAKYFVVIFQEE IIGYLGLWIVIDQAQITTIAIKESFRDYGLGQLLLNYVMDYARHTCDVMSLEVRITNVIA QHVYKKLGFQYGGKRKNYYGEGEDALVMWVNLNE >gi|312979651|gb|ACRM01000014.1| GENE 14 13130 - 14155 742 341 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229232313|ref|ZP_04356740.1| (SSU ribosomal protein S18P)-alanine acetyltransferase [Cryptobacterium curtum DSM 15641] # 6 337 518 858 860 290 44 9e-92 MNRDILILAVETSCDETSVSVIKNGNTILSNIVLSQIESHKRFGGVVPEVASRHHVEGIT TTIDEALSSANVTMEDIDAIAVTQGPGLIGTLLIGINAAKALAFAYNKPVIPVHHIAGHI YANHLEEPLVFPLIALIVSGGHTELVYMKSHLNFEVIGETRDDAVGEAYDKVARTIGLSY PGGPAIDALALEGKDTYHFPRVWLEKDSYDFSFSGLKSAVINKLHNQRQKNEDIKKEDVA TSFQNSVVDVLSTKAINACKAYHVEHLIVAGGVASNKGLRERLNHLCKENNIKLSIPNSK LCTDNAAMIGAAGYYYYKAGVTSSLDLNGKNNIDIEDVTVE >gi|312979651|gb|ACRM01000014.1| GENE 15 14491 - 16428 2182 645 aa, chain - ## HITS:1 COG:SA1852 KEGG:ns NR:ns ## COG: SA1852 COG0488 # Protein_GI_number: 15927622 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Staphylococcus aureus N315 # 1 645 1 642 642 951 80.0 0 MILLQLNDISKSFDGEDIFNHVNFEVKTGERIGVVGRNGAGKSTLMKIIAGVEDYDSGHI SKIKNLRIGYLTQQMTLDSSLTVIEEMSKPFEHIKHMETLINDETDWLAAHVDSYDSEDY KQHMERYESLSNQFEQLEGYQYESKIKTVLHGLNFTEEEFDKPINDFSGGQKTRLSLAQM LLSEPDLLLLDEPTNHLDLETTKWLEDYLKYFKGAIIIISHDRYFLDKIVTQIYDVALGD VKRYVGNYEQFITQRDKYYELRMQEYEKQQEEIKRLETFVEKNITRASTSGMAKSRRKTL EKMERIDKPMMDAKSANIQFGFDRNTGNDVMHIRNLEVGYQSPITAPINIEVTKGDHIAI IGPNGVGKTTLIKTIANRQKALGGEITYGANLNIGYYDQKQAEFKSNKTILDYVWDQYPM MNEKDVRAVLGRFLFVQDDVKKVINDLSGGEKARLQLALLMLQRDNVLILDEPTNHLDID SKEMLEQALKDFEGTILFVSHDRYFINQLANKVFDLNKDGGQLYLGDYQYFIEKTEEASA LKEFEAENNKDETLDLEDTDSSTTNTYASQKQYKRELRKIERQIEQCEEQIEKYEEHITQ IDQQLTQPDIFNDPIKANELAEQKLSIEQQLENVMAEWEELQEKI >gi|312979651|gb|ACRM01000014.1| GENE 16 16675 - 17313 718 212 aa, chain + ## HITS:1 COG:SA1851 KEGG:ns NR:ns ## COG: SA1851 COG2344 # Protein_GI_number: 15927621 # Func_class: R General function prediction only # Function: AT-rich DNA-binding protein # Organism: Staphylococcus aureus N315 # 4 211 3 210 211 297 73.0 1e-80 MPQNQSKIPRATLKRLPLYYRFVNSLKIKGIDRVSSKTISEALDIESATIRRDFSYFGEL GKKGYGYNVESLLEFFKTEISDSNNIHIAIVGVGNLGRALLTYNFSIHDEMTITAAFDID KDIVGTTVGKVTVKHIDDISSELQKQNINVVILTTPGSVAQSVSDRLIKADVKGILNFTP ARIDVPNDVQVHHIDLGIELQSLLFFMKNSSN >gi|312979651|gb|ACRM01000014.1| GENE 17 17454 - 18545 1463 363 aa, chain + ## HITS:1 COG:SA1850 KEGG:ns NR:ns ## COG: SA1850 COG2391 # Protein_GI_number: 15927620 # Func_class: R General function prediction only # Function: Predicted transporter component # Organism: Staphylococcus aureus N315 # 2 361 1 357 359 542 78.0 1e-154 MIWMIISGLIVGLLLGFVMQRTRFCLTGGFRDMYVQKNNKMFYALLVAITVQSIGLLVLT GFDVLTVSYQTFPVIGTIIGSFVFGIGIVLAGGCATGTWYRAGEGLIGSWVALIMYALSA TITKAGILLPLMNKINKPTNVNASMSQTTGIPSWILVIILTGVTLFLVIRTLRKPKPKIA VPKLKQRYSGIRHYLFEKRYHPFVAGIIVGLIALLAWPMSYSTGREDGLGITTPSAHIVQ FLMSGDLKFIDWGVFLVLGIFIGSYIAARGAKEFKWRLPDKITIRNSAIGGICMGFGASV AGGCSIGNGLVATATLSWQGWIALASMILGTWFMSYFIFVRPMKQIQKQTAQSTQISKQT QTT >gi|312979651|gb|ACRM01000014.1| GENE 18 18563 - 18787 383 74 aa, chain + ## HITS:1 COG:SA1849 KEGG:ns NR:ns ## COG: SA1849 COG0425 # Protein_GI_number: 15927619 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 1 73 1 73 74 133 86.0 8e-32 MLYELGTVGMVCPFPLIEAQKKMETLKNGDELKIDFDCTQATEAIPNWAAEQGYPVTNYE QLDDASWTITVQKA >gi|312979651|gb|ACRM01000014.1| GENE 19 18904 - 20142 1354 412 aa, chain + ## HITS:1 COG:SA1848 KEGG:ns NR:ns ## COG: SA1848 COG0004 # Protein_GI_number: 15927618 # Func_class: P Inorganic ion transport and metabolism # Function: Ammonia permease # Organism: Staphylococcus aureus N315 # 1 410 3 412 416 479 67.0 1e-135 MDDTIFLFLCILLVWLMTPGLSLFYGGLVQPKNVLNTVMQSMAAIIIVTFTWVVIGFSLS FGHGNDWIGNFDFIGLQHVGFNTNVQFSPHIPFALFMLFQMMFCTIAVSILSGSIAERMR FIPFTIFIFIWVIMIYSPVAHWVWGGGWIQQLEALDYAGGTVVHITSGVSGLVLAIMIGH GKKVEKLQPNNLLITLIGGIFVWIGWYGFNTGSAFTLNDIAVISFVNTIIAASGGAFSWL ILEYFSNKKLSLLGLLSGVLSGLVTITPAAGFVNYLSAYIISMIGGIACYFVVNSIKEKL RYNDTLDAFGIHGVGGVIGAILTGVFQSHKVNKDILDGLIYTGHLHTIWIQCIAVVVVVV YSIIITFIIGKTLSIFMSLATTVEEDMTGLDQLVHGEKAYFYGELNKLHKRY >gi|312979651|gb|ACRM01000014.1| GENE 20 20397 - 21884 1713 495 aa, chain + ## HITS:1 COG:SA1846 KEGG:ns NR:ns ## COG: SA1846 COG1621 # Protein_GI_number: 15927616 # Func_class: G Carbohydrate transport and metabolism # Function: Beta-fructosidases (levanase/invertase) # Organism: Staphylococcus aureus N315 # 1 491 1 489 494 737 71.0 0 MTEWSREQRYRRIEDVNKDELEALKHRIEQSRYRQHFHIQPETGLLNDPNGLMFYNGTYY VSHQWFPLGAVHGLKYWFNYTSKDLVTFEPNGPILKPDTIYDSHGVYSGSAFEFEGNLYY MYTGNHRDEEWKRYSSQMIAKVKQDGSIEKLNKPVIAHQPEGYTSHFRDPKVFKHHEEYY AILGVQTQQELGRLLLYKMIHRQIDQWEYIGEITTELEDFGYMWECPDYFSLNGQDVIIF SPQGIDAKDEKYRNIYQSGYLIGNLNFDTLEFKHDTFIELDNGFDFYAPQTFIDEYGKRI LIGWMGLPDTHYPTDEEDWAHCLTIPRELTIEEGRLRQRPLKALETLRQNKETALGYANK YNTTLHPYEGTQYELIINILENEATEIYFELRASKLNSTLISYNTREQKITLDRSESGAL PSNVEGVTRSTYLDSPLKQLHIFVDTSSIEIFCNDGERVLTSRIFPDENATAIRTSTETG QVYLKFTKYDLGRDK >gi|312979651|gb|ACRM01000014.1| GENE 21 21885 - 22856 1104 323 aa, chain + ## HITS:1 COG:SA1845 KEGG:ns NR:ns ## COG: SA1845 COG0524 # Protein_GI_number: 15927615 # Func_class: G Carbohydrate transport and metabolism # Function: Sugar kinases, ribokinase family # Organism: Staphylococcus aureus N315 # 1 315 1 315 319 403 63.0 1e-112 MRKLYAIGEALIDFIPNRTNIELKDVTQFSRQVGGAPANVASVAKKLGSRTEMVTQLGND AFGDIIVETLEKIGVGTTYIKRTHAANTALAFVSLKENGERDFSFYRKPSADMLYHASNL DEINISNQDVLHFCSVDLIECDRKNAHLAMIEKFEAAHGMIVFDPNVRLPLWDSAEACKA TIQSFLPKANIIKISDEEIEFVTEISDEHKAIQSLFKGNVEVVIYTQGDKGATAYLKDGT IIHHQGYKVEAVDTTGAGDAFIGAVINRILNTELTDITSLFKEKGEEILKFSNLVAAKVT TKYGAIESIPSLEEVIEELKKRN >gi|312979651|gb|ACRM01000014.1| GENE 22 22895 - 23611 447 238 aa, chain - ## HITS:1 COG:SA1844 KEGG:ns NR:ns ## COG: SA1844 COG3279 # Protein_GI_number: 15927614 # Func_class: K Transcription; T Signal transduction mechanisms # Function: Response regulator of the LytR/AlgR family # Organism: Staphylococcus aureus N315 # 1 238 1 238 238 410 87.0 1e-115 MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDI QLEADINGIKLGSEIRKYDPIGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRI IDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVMFFESSTKSHRLIAHLDNRQI EFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI >gi|312979651|gb|ACRM01000014.1| GENE 23 23624 - 24913 833 429 aa, chain - ## HITS:1 COG:SA1843 KEGG:ns NR:ns ## COG: SA1843 COG2972 # Protein_GI_number: 15927613 # Func_class: T Signal transduction mechanisms # Function: Predicted signal transduction protein with a C-terminal ATPase domain # Organism: Staphylococcus aureus N315 # 65 427 9 371 371 391 62.0 1e-108 MDLLSNVPLALFQGFLLFLISKIILDIKYTLRDYLIILTIIIPSAFFYYYLGSISVLYLL IGCGIFLYCKVKWYSIITVLSSAILMFLSNFIAFILVIIFQKFINNNTYLDLSYISIFTL VSILISFTFKSLLKKLKMSYLSINKTYLTIISIVLILSFIILYIYSQVPKVNNASLKIYG LIFIGIIIFFITLIIIISRYTLRELRYRRNMEEIETYYEYTLQIESINNEMRKFRHDYVN ILTTMSEYIRENDMDGLKTYFNDNIVPMKDNLQMNSIKINGTDNLKVRAIKGLITTKILQ TQEKNIPISIEVPELIDHIEMNTVDLSRIIGIIIDNAIEASEELEDALIRIAFINVETSV MFIVMNKCKEDMPKIHELFQDSFSTKGDNRGLGLTTLKEITDTTENVLLDTTIENGYFVQ KVEIINNMP >gi|312979651|gb|ACRM01000014.1| GENE 24 24935 - 25075 299 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474467|ref|ZP_04059201.1| ## NR: gi|228474467|ref|ZP_04059201.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 46 1 46 46 75 89.0 8e-13 MTFITDLFIKLFSLILETVGTLASYNVCGGYFDEPEVPKELTDLNR >gi|312979651|gb|ACRM01000014.1| GENE 25 25078 - 25644 583 188 aa, chain - ## HITS:1 COG:SA1842 KEGG:ns NR:ns ## COG: SA1842 COG4512 # Protein_GI_number: 15927611 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; K Transcription # Function: Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide # Organism: Staphylococcus aureus N315 # 1 187 1 187 187 176 54.0 2e-44 MKAIDDKIEHFASYLQKKNNLDHIQFLKVRLGMQVVVSNIAKTIVTYGAALIFHTFLYTL ITHISYFLIRHNAHGAHAKSTLLCHIQNLILFVGLPWLIAYYHINMGIMYSVSGLALLLI IIYAPAATKKQPIPERLKPRKKIKSIILVVVLIIISIIVPEPYKQLILLGMILESTTLLP FFFPKEDY >gi|312979651|gb|ACRM01000014.1| GENE 26 26346 - 27131 857 261 aa, chain - ## HITS:1 COG:SA1841 KEGG:ns NR:ns ## COG: SA1841 COG0388 # Protein_GI_number: 15927609 # Func_class: R General function prediction only # Function: Predicted amidohydrolase # Organism: Staphylococcus aureus N315 # 1 261 1 261 261 345 61.0 5e-95 MKIQIFQFHVEYGNVEKNEQKISEWFNTQLDDDTEVVVLPEMWNNGYALEELNEKADQAL SRSFPFISNLAQTYQVDIVAGSVSNKQNNKVYNTAFTVSKKGRRINKYDKVHLVPMLNEP EFLEDGKTVPEPFALSSGALATQIICYDLRFPELLRYPSREGAQIAFYVAEWPTSRLNHW RNLLQARAIENDIFIVACNGTGHDGNTEYAGHSMVINPNGDILVELNREEDTISVDINIQ EVSRQRDAIPIFRNLKPHLYK >gi|312979651|gb|ACRM01000014.1| GENE 27 27262 - 27885 854 207 aa, chain - ## HITS:1 COG:SA1840 KEGG:ns NR:ns ## COG: SA1840 COG3560 # Protein_GI_number: 15927608 # Func_class: R General function prediction only # Function: Predicted oxidoreductase related to nitroreductase # Organism: Staphylococcus aureus N315 # 1 207 1 208 208 280 65.0 1e-75 MELFDKENTKPFLTEIENRRTIYKTKTSISISDEELEEMIEHIVKYMPSAFNSQSTRIVL LLNDQHIKFWENAKTVLKDVMGPDRDFEPTNQRINGFEHAYGTILYFEDEDVIKSLQEQM PSYADNFANWAVQTNAMHQYAIWTALSSKGIGASLQHYNPLVDQVTTQTFDIPASWKLVA QMPFGDIEEQAGEKEIHPTDQRFIIKK >gi|312979651|gb|ACRM01000014.1| GENE 28 28063 - 28593 756 176 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474464|ref|ZP_04059198.1| ## NR: gi|228474464|ref|ZP_04059198.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 91 1 91 91 90 94.0 4e-17 MIKQKVIRTSLIFAISATIFSHYSYAETSSNIESEGVDQKVNSQINSDTQQSKIKLSKEN IKKFNYTSDETSNTEEPKIENIHQESDETNSKEKSAAEESQQESDETNSKEKSTVEESQQ ESNETNSKEKSAVEESQQESDETNSKEKSTVEESRKESDETNSTEKSAAEESPTRK Prediction of potential genes in microbial genomes Time: Sun May 29 09:20:16 2011 Seq name: gi|312979650|gb|ACRM01000015.1| Staphylococcus hominis subsp. hominis C80 cont1.15, whole genome shotgun sequence Length of sequence - 70995 bp Number of predicted genes - 74, with homology - 73 Number of transcription units - 44, operones - 17 average op.length - 2.8 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1109 892 ## SH0999 hypothetical protein + Term 1112 - 1151 1.0 - Term 1094 - 1143 13.1 2 2 Tu 1 . - CDS 1165 - 1905 748 ## COG1266 Predicted metal-dependent membrane protease - Prom 2005 - 2064 7.1 + Prom 1991 - 2050 4.9 3 3 Op 1 41/0.000 + CDS 2080 - 2367 529 ## COG0234 Co-chaperonin GroES (HSP10) 4 3 Op 2 . + CDS 2424 - 4043 1605 ## PROTEIN SUPPORTED gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 + Term 4051 - 4091 2.2 + Prom 4388 - 4447 11.1 5 4 Tu 1 . + CDS 4611 - 4760 137 ## gi|228476306|ref|ZP_04061007.1| conserved hypothetical protein + Term 4771 - 4817 4.1 + Prom 4842 - 4901 10.4 6 5 Tu 1 . + CDS 4943 - 5614 731 ## COG0518 GMP synthase - Glutamine amidotransferase domain + Term 5619 - 5663 5.7 - Term 5605 - 5651 5.2 7 6 Tu 1 . - CDS 5665 - 6951 1629 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase - Prom 6976 - 7035 13.1 + Prom 7325 - 7384 11.0 8 7 Tu 1 . + CDS 7417 - 7596 225 ## SH1020 hypothetical protein + Term 7601 - 7661 9.4 + Prom 7692 - 7751 10.8 9 8 Op 1 8/0.000 + CDS 7784 - 8164 476 ## COG1725 Predicted transcriptional regulators 10 8 Op 2 . + CDS 8161 - 9060 807 ## COG1131 ABC-type multidrug transport system, ATPase component 11 8 Op 3 . + CDS 9057 - 9719 555 ## SH1023 hypothetical protein 12 8 Op 4 . + CDS 9737 - 10609 964 ## COG1131 ABC-type multidrug transport system, ATPase component 13 8 Op 5 . + CDS 10610 - 11338 808 ## SH1025 hypothetical protein + Term 11355 - 11408 8.2 + Prom 11392 - 11451 8.4 14 9 Op 1 . + CDS 11475 - 11969 506 ## SH1027 hypothetical protein 15 9 Op 2 . + CDS 12017 - 12571 477 ## COG4709 Predicted membrane protein 16 9 Op 3 . + CDS 12571 - 13413 500 ## SH1029 hypothetical protein - Term 13411 - 13470 7.1 17 10 Tu 1 . - CDS 13479 - 14519 1182 ## COG4927 Predicted choloylglycine hydrolase - Prom 14721 - 14780 9.6 + Prom 14700 - 14759 13.4 18 11 Tu 1 . + CDS 14799 - 14972 311 ## SLGD_01005 hypothetical protein + Term 14992 - 15031 6.1 + Prom 14981 - 15040 8.5 19 12 Tu 1 . + CDS 15095 - 16141 1274 ## COG2706 3-carboxymuconate cyclase - Term 16051 - 16096 0.2 20 13 Tu 1 1/0.765 - CDS 16199 - 17581 1572 ## COG1012 NAD-dependent aldehyde dehydrogenases - Prom 17653 - 17712 7.7 - Term 17691 - 17734 1.2 21 14 Op 1 1/0.765 - CDS 17761 - 18690 1314 ## COG1227 Inorganic pyrophosphatase/exopolyphosphatase 22 14 Op 2 . - CDS 18739 - 19299 678 ## COG1335 Amidases related to nicotinamidase - Prom 19361 - 19420 9.1 + Prom 19300 - 19359 6.2 23 15 Tu 1 . + CDS 19436 - 20515 864 ## COG5434 Endopolygalacturonase + Term 20563 - 20601 6.5 + Prom 20531 - 20590 8.4 24 16 Tu 1 . + CDS 20756 - 22315 2062 ## COG0471 Di- and tricarboxylate transporters + Term 22388 - 22437 10.4 25 17 Op 1 1/0.765 - CDS 22496 - 23296 645 ## COG0077 Prephenate dehydratase 26 17 Op 2 . - CDS 23327 - 24394 1062 ## COG4362 Nitric oxide synthase, oxygenase domain - Prom 24479 - 24538 8.9 + Prom 24444 - 24503 6.0 27 18 Op 1 5/0.000 + CDS 24573 - 26042 1473 ## COG1488 Nicotinic acid phosphoribosyltransferase 28 18 Op 2 1/0.765 + CDS 26035 - 26871 1131 ## COG0171 NAD synthase + Term 26911 - 26956 -0.8 + Prom 26893 - 26952 8.2 29 19 Op 1 . + CDS 26982 - 27587 814 ## COG4843 Uncharacterized protein conserved in bacteria 30 19 Op 2 . + CDS 27568 - 27750 221 ## SH1042 hypothetical protein + Term 27767 - 27807 4.1 + Prom 27804 - 27863 9.6 31 20 Op 1 . + CDS 27973 - 29268 1714 ## COG0015 Adenylosuccinate lyase + Prom 29283 - 29342 8.4 32 20 Op 2 . + CDS 29373 - 29675 433 ## COG4496 Uncharacterized protein conserved in bacteria + Term 29681 - 29731 8.0 + Prom 29750 - 29809 5.5 33 21 Op 1 4/0.000 + CDS 29835 - 30527 872 ## COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold 34 21 Op 2 5/0.000 + CDS 30527 - 32719 2468 ## COG0210 Superfamily I DNA and RNA helicases 35 21 Op 3 4/0.000 + CDS 32723 - 34726 2306 ## COG0272 NAD-dependent DNA ligase (contains BRCT domain type II) 36 21 Op 4 . + CDS 34738 - 35298 575 ## COG4851 Protein involved in sex pheromone biosynthesis 37 21 Op 5 . + CDS 35313 - 35936 614 ## COG4851 Protein involved in sex pheromone biosynthesis + Term 35937 - 35992 17.1 - Term 35925 - 35979 11.2 38 22 Tu 1 . - CDS 35996 - 37534 1936 ## COG0591 Na+/proline symporter - Prom 37623 - 37682 11.7 + Prom 37673 - 37732 10.5 39 23 Op 1 31/0.000 + CDS 37960 - 38262 618 ## COG0721 Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit 40 23 Op 2 21/0.000 + CDS 38264 - 39721 443 ## PROTEIN SUPPORTED gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 41 23 Op 3 2/0.235 + CDS 39734 - 41161 1965 ## COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) + Prom 41175 - 41234 6.1 42 24 Tu 1 . + CDS 41476 - 42393 1065 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 42453 - 42507 0.4 + Prom 42409 - 42468 3.7 43 25 Tu 1 . + CDS 42525 - 43889 1120 ## COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase + Prom 43904 - 43963 5.2 44 26 Tu 1 . + CDS 44026 - 44574 248 ## SH1057 hypothetical protein + Prom 44592 - 44651 5.2 45 27 Tu 1 . + CDS 44683 - 45753 1041 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair 46 28 Tu 1 . - CDS 45781 - 46338 371 ## COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases - Prom 46394 - 46453 8.0 + Prom 46377 - 46436 11.2 47 29 Op 1 10/0.000 + CDS 46580 - 47890 1456 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase 48 29 Op 2 . + CDS 47893 - 48609 855 ## COG3442 Predicted glutamine amidotransferase + Term 48616 - 48661 12.5 - Term 48604 - 48649 12.5 49 30 Tu 1 . - CDS 48654 - 49643 660 ## COG4129 Predicted membrane protein - Prom 49748 - 49807 6.9 + Prom 49729 - 49788 5.4 50 31 Tu 1 . + CDS 49817 - 50569 1144 ## COG0024 Methionine aminopeptidase + Term 50577 - 50625 13.5 - Term 50567 - 50611 11.0 51 32 Tu 1 . - CDS 50618 - 51628 1020 ## COG3376 High-affinity nickel permease - Prom 51866 - 51925 11.4 52 33 Op 1 . + CDS 51856 - 52242 311 ## SH1068 hypothetical protein 53 33 Op 2 7/0.000 + CDS 52263 - 52964 553 ## COG4758 Predicted membrane protein 54 33 Op 3 19/0.000 + CDS 52961 - 53995 1280 ## COG4585 Signal transduction histidine kinase 55 33 Op 4 . + CDS 53997 - 54626 882 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 56 34 Tu 1 . - CDS 54706 - 55914 1272 ## COG1295 Predicted membrane protein - Prom 55934 - 55993 5.8 - Term 55932 - 55984 9.3 57 35 Op 1 . - CDS 56006 - 56287 427 ## SH1074 hypothetical protein 58 35 Op 2 . - CDS 56293 - 56757 518 ## COG0394 Protein-tyrosine-phosphatase - Prom 56819 - 56878 8.8 + Prom 56768 - 56827 8.5 59 36 Op 1 1/0.765 + CDS 56899 - 57105 337 ## COG4840 Uncharacterized protein conserved in bacteria 60 36 Op 2 1/0.765 + CDS 57117 - 58364 1573 ## COG2309 Leucyl aminopeptidase (aminopeptidase T) 61 36 Op 3 . + CDS 58397 - 58930 585 ## COG1607 Acyl-CoA hydrolase + Term 59162 - 59210 10.6 - Term 59150 - 59198 14.4 62 37 Tu 1 . - CDS 59236 - 60381 1338 ## COG0535 Predicted Fe-S oxidoreductases - Prom 60426 - 60485 6.6 + Prom 60372 - 60431 6.4 63 38 Op 1 . + CDS 60525 - 60686 337 ## SAOUHSC_02014 hypothetical protein + Prom 60707 - 60766 4.4 64 38 Op 2 . + CDS 60796 - 61314 807 ## COG0693 Putative intracellular protease/amidase + Term 61346 - 61387 7.1 65 39 Tu 1 . - CDS 61591 - 61713 69 ## - Prom 61742 - 61801 4.6 + Prom 61674 - 61733 8.9 66 40 Tu 1 . + CDS 61766 - 62578 852 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) + Term 62615 - 62663 1.5 + Prom 62629 - 62688 8.7 67 41 Op 1 . + CDS 62747 - 63550 967 ## COG2137 Uncharacterized protein conserved in bacteria 68 41 Op 2 . + CDS 63543 - 63857 327 ## SH1088 hypothetical protein 69 41 Op 3 . + CDS 63873 - 65390 1478 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component 70 41 Op 4 . + CDS 65369 - 66163 435 ## SH1090 hypothetical protein + Term 66215 - 66265 8.3 - Term 66206 - 66250 9.1 71 42 Tu 1 . - CDS 66280 - 67257 939 ## COG1988 Predicted membrane-bound metal-dependent hydrolases - Prom 67302 - 67361 9.8 + Prom 67247 - 67306 8.3 72 43 Op 1 1/0.765 + CDS 67393 - 68439 465 ## PROTEIN SUPPORTED gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase + Prom 68444 - 68503 7.1 73 43 Op 2 2/0.235 + CDS 68532 - 69074 622 ## COG3557 Uncharacterized domain/protein associated with RNAses G and E + Term 69171 - 69207 -0.8 + Prom 69147 - 69206 4.9 74 44 Tu 1 . + CDS 69228 - 70964 239 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 Predicted protein(s) >gi|312979650|gb|ACRM01000015.1| GENE 1 3 - 1109 892 368 aa, chain + ## HITS:1 COG:no KEGG:SH0999 NR:ns ## KEGG: SH0999 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 207 364 399 561 562 115 49.0 3e-24 EESQQESDETNSKEKSTVEESQQESDETNSTEKSTAEESRKESDETNSLEELKKEKVNDK NQQKSGIEHIHKNNTSSSKEKNHTKYKTAQKSKNYKNDDSTIFKQEEHQNVRSKSMKSKQ NQIIQPYNDNTSSNVYSKTTYQKDKSQNSISKTMFNQLVSRQLVENNHNNFEPTHLKQNN LYFQSDRGKESTYRNAYQIESRFSENILNRFNQYAKGAYKYNPYIINKINHLDDNGKKIT NKDFNRLIKKQKFDNQNLNILQEDSQYFRFQYFNPLNAKEYYKNLDEQVLSLITSDIGSM PDLKKPKTIHKDEVEEEQHKKVITSSHKKTESKSYIKTLNMILIPTLILISSTVMIIYVY QNLKTKKK >gi|312979650|gb|ACRM01000015.1| GENE 2 1165 - 1905 748 246 aa, chain - ## HITS:1 COG:SA1838 KEGG:ns NR:ns ## COG: SA1838 COG1266 # Protein_GI_number: 15927606 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 1 244 1 244 247 239 55.0 3e-63 MARIWVAILTLIIYALAQFLPLVLAQTPIFSRLSGMALARAGVYTQVILFILAAILIIFF HFKIKNPTNLEQEHKESKRYIIPWAILGFFIVMLYQVIVGVINIWIFGQPQQSPNTQRIM AVAKQLPIFIILISVVGPILEEYVFRKVFFGELYDRIKGNRIIAFLIASTVSSLLFALAH NDIKFILIYFGMGMILSLAYTLTKRISVPILIHIFQNGFVVVMQFFLGDSFNHLKQQTQF IIHLCN >gi|312979650|gb|ACRM01000015.1| GENE 3 2080 - 2367 529 95 aa, chain + ## HITS:1 COG:SA1837 KEGG:ns NR:ns ## COG: SA1837 COG0234 # Protein_GI_number: 15927605 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Co-chaperonin GroES (HSP10) # Organism: Staphylococcus aureus N315 # 1 94 1 94 94 128 79.0 3e-30 MLKPLGNRVIIERKEQEQTTKSGIVLTDSAKEKSNEGVVVAVGSGRLLDNGETVAPEVKE GDSVVFQEYAGSEIKRGEESYLILNVEDILAIIEK >gi|312979650|gb|ACRM01000015.1| GENE 4 2424 - 4043 1605 539 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167855908|ref|ZP_02478658.1| 50S ribosomal protein L28 [Haemophilus parasuis 29755] # 2 538 3 543 547 622 58 1e-177 MAKDLKFSEDARQAMLRGVDKLANAVKVTIGPKGRNVVLDKEYVAPLITNDGVTIAKEIE LEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLREGID KAVRVAVEALHDISQKVENKNEIAQVGAISAADEEIGKYISEAMDKVGNDGVITIEESNG LDTELEVVEGMQFDRGYQSPYMVTDSEKMIAELERPYILVTDKKISSFQDILPLLEQVVQ SSRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGATVIT DDLGLELKDASIDMLGTANKVEVTKDNTTVVDGDGDDNSIDARVSQIKAQIEETDSDFDR EKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNI YNKVEEIEAEGDVATGVNIVLKALSAPVRQIAENAGLEGSVIVERLKHADAGVGFNAATN EWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVANIPEPESNDNAAMGGMPGMM >gi|312979650|gb|ACRM01000015.1| GENE 5 4611 - 4760 137 49 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228476306|ref|ZP_04061007.1| ## NR: gi|228476306|ref|ZP_04061007.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 49 1 49 49 89 97.0 5e-17 MNIELASSFERGASNEKLKKHGGTLIYIRWKDRMNPIKYYSDLIENRKV >gi|312979650|gb|ACRM01000015.1| GENE 6 4943 - 5614 731 223 aa, chain + ## HITS:1 COG:lin0511 KEGG:ns NR:ns ## COG: lin0511 COG0518 # Protein_GI_number: 16799586 # Func_class: F Nucleotide transport and metabolism # Function: GMP synthase - Glutamine amidotransferase domain # Organism: Listeria innocua # 1 220 1 220 226 178 40.0 6e-45 MRINILQHTPNEGPGVIRDWATEHHHELYIYHPYFNSGILPNVKETDLLIILGGPMSPNN EDKWIFEERELIRNLIQQNKPIFGICFGAQQITKALGYTVGKSPVKEVGWNKVYRESSII PNIPKELMALHWHEETFYIPKNAQLLFSSQYLKNQGFILNNNIIGLQFHFEPGAHDIKEI VMNDAPYVFDSILKQTPDQILNQEVPRENKEVMFKLLDFITSH >gi|312979650|gb|ACRM01000015.1| GENE 7 5665 - 6951 1629 428 aa, chain - ## HITS:1 COG:SA1749 KEGG:ns NR:ns ## COG: SA1749 COG0436 # Protein_GI_number: 15927510 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Staphylococcus aureus N315 # 1 428 1 428 428 652 74.0 0 MNPLAQHLNDQLGDDRPEILSMLSTLGQSMFYPKGILSQSAEAKSTKYNATIGMATNDKG KMYADTLFDVYNHLSPDEIFPYAPPQGIETLRDLWQQKMLKENPSLKASSISRPIVTNAL THGLSLVADLFVNDEDTILLPTHNWGNYKLIFNTRHKANIETYAIFDQDGHYTTNSLVST LDNFKQDKAIIILNYPNNPTGYTPTKEEVRTIVSAIERLAEKGTKVITVVDDAYYGLFYE DVYTQSIFTAITQLDSKNILPIRLDGATKEFFAWGLRVGFLTFGLSNQKAKDVLEAKVKG LIRSNISSGAMPSQSAIKYILENHEQFDKEIQANVKTLQERYEVTKEVVYDEKYKQHWQA YDFNSGYFMALKVIGVNPEKLRVHLIDNYSIGIIALNDTDIRIAFSCVEKNDIPHVFDSI AKAIDDLK >gi|312979650|gb|ACRM01000015.1| GENE 8 7417 - 7596 225 59 aa, chain + ## HITS:1 COG:no KEGG:SH1020 NR:ns ## KEGG: SH1020 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 59 1 59 59 94 86.0 1e-18 MMKHLTKIFVGLAIVLFVIGYYLQATGHESQGIKLLLAAIMFMICAFINRSNDRRKNKK >gi|312979650|gb|ACRM01000015.1| GENE 9 7784 - 8164 476 126 aa, chain + ## HITS:1 COG:SA1748 KEGG:ns NR:ns ## COG: SA1748 COG1725 # Protein_GI_number: 15927508 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 124 1 124 126 161 77.0 3e-40 MKVILKNTSEQPIYEQIKQQIKENILKGYVEAGSHLPSMRELAKDLQVSLITTKRAYEDL EKEGFVTTIRGKGTFVKEQDSSILKEKQFFVIEHLARSMVKEAKTIGMPLKELNEVLALI YEEEDE >gi|312979650|gb|ACRM01000015.1| GENE 10 8161 - 9060 807 299 aa, chain + ## HITS:1 COG:SA1747 KEGG:ns NR:ns ## COG: SA1747 COG1131 # Protein_GI_number: 15927507 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 284 1 284 298 345 59.0 5e-95 MKAIEVKHVSYNTKTFQIKDLSFSIPQGFVTGFIGSNGAGKTTMIRLMMDLLEPNTGEIK ILGRQMKESAKWIKNKIGFVYSEIYFNQQWNIKKLENMISPFYSKWDSHIFHQYLEQFNI PSHLKIKHFSSGMKMKLSLAIALSHHAELFILDEPTAGLDPIVRNEVLEILQQELIDENK TVFISTHIISDLEKIADYLVYIKTGNLVLEGYCDDIKEEYFIVKGDNKDLDDELNQLLLY KEEKHTGYVGFTKHGQAFKELFGKQVEIKHPTIEELMIYLEKMKETNDVETPNRNGLMA >gi|312979650|gb|ACRM01000015.1| GENE 11 9057 - 9719 555 220 aa, chain + ## HITS:1 COG:no KEGG:SH1023 NR:ns ## KEGG: SH1023 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 220 1 220 227 226 58.0 3e-58 MKQLIIRNFKLRRWTLIIYLVLIVINPIYTLFFSKTSYGFVVYIPLAITLMIISILDSGQ LFRVHRRLGGKESYLFYESLPITKKELLNANYLTCIILTILGTLIIGLYNFQSTNIQVNE LRYSTALSFLSVNLFSIPIAFSKSTERKREYISYTVYIILMVLAIPMAIAFIFLTINLFI FHNALDPNVFNKYLSIGLVIISVIWLVINYFIQIARVNRR >gi|312979650|gb|ACRM01000015.1| GENE 12 9737 - 10609 964 290 aa, chain + ## HITS:1 COG:SA1745 KEGG:ns NR:ns ## COG: SA1745 COG1131 # Protein_GI_number: 15927505 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 289 1 289 290 428 76.0 1e-120 MKLENITKTYGNNNVLDNIDFDFGDSKIVGLIGKNGVGKTTLMKVMNGNIINYKGKVNLK DDENIGYLIEHPKLYDNKTGLYNLRLFAQVLGQGFDKAYSDKIIDAFGMRPYIKKKVKKY SMGMKQKLAIAVSLMNKPKYLILDEPTNGMDPDGSIDVLETIQSLVNELNMKILISSHKL EDIELICDRAVFLRDGHFVQDVNMKDGSAEESTSITLDNDDFDQALNYLQEHFNVIHSYK QNGEILIKAERDYRTLLKALAHINVYPKYIETRKNSLRDTYFNINQRGDH >gi|312979650|gb|ACRM01000015.1| GENE 13 10610 - 11338 808 242 aa, chain + ## HITS:1 COG:no KEGG:SH1025 NR:ns ## KEGG: SH1025 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 242 1 242 242 300 81.0 2e-80 MKSLQLVKYDILSFLKSYLTYIALICIWGIITAMTVLLAKNTDKVDYSMILPMANWMFLF FGLLVVIKTITRDYSQGTIQLYMNKVKNRVGYVIAKTISIIIFSFIFTLITYVTLLVIQT FTDGKNLNGDKFLTNIWFYLIFLLFFGLLLFLITLIVQKPAVIFTLGIFLVFIVPFLQPF LGLIPEWGDNIQKSLKYIPFSYLTEKSSSGSIEFTNWQWFISIASIVILFIADVLYAAKR DI >gi|312979650|gb|ACRM01000015.1| GENE 14 11475 - 11969 506 164 aa, chain + ## HITS:1 COG:no KEGG:SH1027 NR:ns ## KEGG: SH1027 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 4 164 1 161 161 179 62.0 4e-44 MVLLHIQNRWVISILFIVISLLVVLGLTIYKNEKTVDLSDVEINHLKLNETFDNSEYSLN KHVKLDRYVFYNHNKYKNLTIKVKKRHHKIKGIILVKDTFVNTNFDVHIGDQIDAVIDNL GYNYDKDKVGKGYDALVYLDKDHHMKLSILYKDNIVKRIEFFSR >gi|312979650|gb|ACRM01000015.1| GENE 15 12017 - 12571 477 184 aa, chain + ## HITS:1 COG:SA1741 KEGG:ns NR:ns ## COG: SA1741 COG4709 # Protein_GI_number: 15927501 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 184 1 184 185 153 46.0 2e-37 MDKITFLNELETELDDLPRKEKDKVMNEYEDIFYNQETKGKTDAQILDDLKNPYTIGKEI KAKEAISHAKVTPNFRNIVKAIMASLSLGVISFFLIVIPIIIFLIFLAFVFVISIVLICL PILLIIISILKGTPDSFSNFLYSISYAGIGILVFVAIIKIVQNLYKLVLKYLSWYIKIIK GRIQ >gi|312979650|gb|ACRM01000015.1| GENE 16 12571 - 13413 500 280 aa, chain + ## HITS:1 COG:no KEGG:SH1029 NR:ns ## KEGG: SH1029 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 280 1 280 280 241 51.0 2e-62 MKKLTISGLVIFVVFFLAATLVWFVHDKDIYKRLKYNETFHQSSISKLNIDSYSSDITIT QGSSFRVKYYGDNSIKVNTQKDSLNVKESRSSKRGYSFNLNPFKRSKFNIHITIPPDKLK QLNIDAKLGKLNINNIDIKKARIRKDGENLNIKEAKLDHIDYYSDHGTINIKNSDIKNSQ FKVINSNIVVNHCTLKNGLFITNEGKLDFKNMPSQIDMKSSSKKGDINIEYKTKPKDTLL KLHPGMGDNNIKNPYFKDSKVGNSYNIIECYNVKGDINIK >gi|312979650|gb|ACRM01000015.1| GENE 17 13479 - 14519 1182 346 aa, chain - ## HITS:1 COG:SA1739 KEGG:ns NR:ns ## COG: SA1739 COG4927 # Protein_GI_number: 15927499 # Func_class: R General function prediction only # Function: Predicted choloylglycine hydrolase # Organism: Staphylococcus aureus N315 # 1 344 1 344 346 603 80.0 1e-172 MQEVKSDIMTFRGSHFDLGIKTAQWLKQTPLLENREREWKKRMPRFDIDVNETYSIFQTY APKIWEELLGMQEILNLPTKQMILNFGHYRFTDLNESGCTVFQGKDYMVRNYDYHPATYD GRYLLYQPNDGGLAQIGPTSRVTGRMDGMNEAGLVMGYNFMHRKHPANGFVCYMVGRLVL EYCKDVKEAIQFLKELPHRSSFSYILMDKHLNHAIVEITPRSFDVRYDKVCTNHFEILTH ENRNYTKESKERLARTISQTSEDIDKYTAFKLFNDPKYDIYSKLFKSWSGTIHTSMYEPK HLKAWMTLGENRPPLSIDFQSWLEGHELDLIEFTGKLDTDLTFATY >gi|312979650|gb|ACRM01000015.1| GENE 18 14799 - 14972 311 57 aa, chain + ## HITS:1 COG:no KEGG:SLGD_01005 NR:ns ## KEGG: SLGD_01005 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 57 1 57 57 68 71.0 7e-11 MWDFIKGLFKFLLSFTAITALVVGVVVVVFGFIFKKDFEDIERKTKEIVSDIESNNA >gi|312979650|gb|ACRM01000015.1| GENE 19 15095 - 16141 1274 348 aa, chain + ## HITS:1 COG:SA1737 KEGG:ns NR:ns ## COG: SA1737 COG2706 # Protein_GI_number: 15927495 # Func_class: G Carbohydrate transport and metabolism # Function: 3-carboxymuconate cyclase # Organism: Staphylococcus aureus N315 # 3 343 2 342 342 430 62.0 1e-120 MTTKGYVGSYTKKEGKGIYIFELNEDNGEIQSVDTGYDIEASTYLAQTEQFLYAITKENE ACGVAAFKKGENGQLTLINKCLASENGTGCYISVSSDHNFLFEAVYTAGIARIYQLNPDT GEVVKLIEELEHSYPTGTHERQDHNHVHFIRETPDHKYVAVTDLGADKIVTYTFGVEGFK EHAVSEFHAEDGPRHIEFHNNGKYAYVVHELSNRVSVVQYHDGKFEEIERHLTIPEDFTG ETKLAAVRLSHDEQNLYISNRGHDSIAIFTVVDDGKGINPVEIVKSGGEFPRDFNITESD EYLVCAHQEGNYALTVFRRDTNSGMLIATDNQYTAPEGVFVDFLISSL >gi|312979650|gb|ACRM01000015.1| GENE 20 16199 - 17581 1572 460 aa, chain - ## HITS:1 COG:SA1736 KEGG:ns NR:ns ## COG: SA1736 COG1012 # Protein_GI_number: 15927494 # Func_class: C Energy production and conversion # Function: NAD-dependent aldehyde dehydrogenases # Organism: Staphylococcus aureus N315 # 1 459 1 459 459 685 72.0 0 MNLIEKQFQESKQFFKTHQTKDIKFRKQQLKLLSKSIKDHETELLESLKIDLGKGSVEAY ATEIGILLKSIKTARKELKNWAKTKQVDTPLFMFPSKSYIKPEPYGTILIIGPFNYPVQL LFEPLIGAIAAGNNAIIKPSELTPHVAQVVRKVIEDVFASDFVAVVEGGVEETQTLINLP FDYIFFTGSENVGRIVYEAASKNLVPVTLELGGKSPVIVDETANIKVASDRISFGKFTNA GQTCVAPDYILVNRKVKNELIQAFKQSIEEFYGKNIQNSPDFGRIVNTKHFNRLSELLAI HRNEVIFGGHTDENEQYIEPTILDGITPQSKIMEEEIFGPLLPIIVYDDFNEAIDIIQSK SKPLSLYLFSEDENTTNCVLEELSFGGGAINDTLMHLANPNLPFGGVGASGIGEYHGKYS FDTFSHMKSYIFKSTRLDSSIIYPPYKGKFKYIRTFFKNL >gi|312979650|gb|ACRM01000015.1| GENE 21 17761 - 18690 1314 309 aa, chain - ## HITS:1 COG:SA1735 KEGG:ns NR:ns ## COG: SA1735 COG1227 # Protein_GI_number: 15927493 # Func_class: C Energy production and conversion # Function: Inorganic pyrophosphatase/exopolyphosphatase # Organism: Staphylococcus aureus N315 # 1 309 1 309 309 476 81.0 1e-134 MAKTYIFGHQNPDTDAISSAIIMADFEQQTGNSEATPYRLGEVSAETKYALDHFKVDAPT LLNDDLEGQDVILVDHNEFQQSAETIAKANIVNVVDHHRIANFETAGPLYYRAEPVGCTA TILFKMYKERNFKIKPEIAGLMISAIISDSLLFKSPTCTEEDVNAAKALKDIANVDLDEY GLEMLKAGASTTDKSAEELLNMDAKSFNMGDYVTRIAQVNTVDIDEVLNRKDELEKAMLE TSANEKYDLFVLVVTDIINSDSKILVVGAEKDKVGQAFNVQLDDGMAFLSGVVSRKKQVV PQITEILTK >gi|312979650|gb|ACRM01000015.1| GENE 22 18739 - 19299 678 186 aa, chain - ## HITS:1 COG:SA1734 KEGG:ns NR:ns ## COG: SA1734 COG1335 # Protein_GI_number: 15927492 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Amidases related to nicotinamidase # Organism: Staphylococcus aureus N315 # 1 183 1 183 186 270 70.0 1e-72 MTNKALIVVDYSYDFIADDGRLTCGKPGQDIEQFIVERLNQYQHQHDNIFFMMDLHFEED PYHPETKLFPPHNIEGTSGRQLYGKVKSFFDKYKNEDTVHYLDKRRYDSFYGTALDSLLR ERHIDTVEIVGVCTDICVLHTAISAYNLGYHIIIPEQGVASFNEEGHQFALAHFKNSLGA KVEVIN >gi|312979650|gb|ACRM01000015.1| GENE 23 19436 - 20515 864 359 aa, chain + ## HITS:1 COG:SP1833 KEGG:ns NR:ns ## COG: SP1833 COG5434 # Protein_GI_number: 15901662 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Endopolygalacturonase # Organism: Streptococcus pneumoniae TIGR4 # 2 329 141 464 708 60 25.0 4e-09 MINAQDFGLKGKHKRRDTKAIQKALNAARYGEHTVYIPSGTYYISKALVIYDHTTLILED DTILQRHSRDALLKNGKKFGFYHGYQGNGHIKIKGGIFDMNGSKYPYNNTAMSIGHAEDI ELIDITVLDVVGGHALDACGINGLYIKDCKFKGFFDVNGDRSFSEAIQLDIQVPGSFPKF GTTDGTITKNVVIEDCYFGNSNQYKMQAWNRAIGSHASRYNRFYENIHIRNNVFNGMNEY ALTPLKSKTMFISNNTFINCNGGIRFLGVKDGKNAADVSTGQVQKTQAGDNLTVTGNHFE GEMKRDAIHVRSYNNVKHTNVFIAGNSFNHSTQRLHLEDISNLTFNQNDKVKVKKINID >gi|312979650|gb|ACRM01000015.1| GENE 24 20756 - 22315 2062 519 aa, chain + ## HITS:1 COG:SA1732 KEGG:ns NR:ns ## COG: SA1732 COG0471 # Protein_GI_number: 15927490 # Func_class: P Inorganic ion transport and metabolism # Function: Di- and tricarboxylate transporters # Organism: Staphylococcus aureus N315 # 50 519 51 520 520 691 83.0 0 MTKQSGFRRNAQYLTFFSKKDHTNQSYSMGQLLGLILGPLLFVLILSFFHPVELPFKGVY VLGITVWIAIWWITEAIPIAATSFLPLILLPLGHVLSPEQVSSEYGNDIIFLFLGGFILA IAMERWNLHTRVALTIIRYIGASTSKILLGFMIATGFLSMFVSNTAAVMIMIPIGLAIIK EANELKDDDVKSDSISKFEKSLVLAIGYSGTIGGLGTLIGTPPLIILKGQFEQHFGQEIS FAKWMIVGIPTVIILIALAWAYLRFIAFRHDLKYLPGGQTLIEDKLNRLGKMSYEEKVVQ AIFILASLLWITREFILKNFSITSEVADGTIAIFISILLFIFPAKSKEKHKRIIDWEVAK ELPWGVLILFGGGLALAKGISESGLAKWLGEQLKMLDGVHPLVIVIVITIFVLFLTEVTS NTATATMILPILAALSVAVGVHPMLLMVPAAMAANCAYMLPVGTPPNAIIFGSGKLSIKE MAKVGVWVNLISAVIIIVVVYFLMPYILGFDISDTLNLK >gi|312979650|gb|ACRM01000015.1| GENE 25 22496 - 23296 645 266 aa, chain - ## HITS:1 COG:SA1731 KEGG:ns NR:ns ## COG: SA1731 COG0077 # Protein_GI_number: 15927489 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydratase # Organism: Staphylococcus aureus N315 # 1 264 1 264 264 370 70.0 1e-102 MHLYYLGPEGTFSYLAAKKYFSKDNFNFIPKSNLYEVIKAVNSDAQSVAIVPIENSIEGT INIVADALAQQHVFAHGEIHLDINFGLYATRDSKIENIKKVYSIAPAISQTSQYIHKHQF SYDYVDSTIQGLEKISSDVAAIVPVGSGEMYGYTAIESNIQDYPHNVTRFLVIKNDNNFE SKTNNTMLLITPKYDKAGLLASILTTFALFDINLSWIESRPLKTQLGMYRFFVQADTGLS DNLNKVISILETLDFSVKIIGAFHRQ >gi|312979650|gb|ACRM01000015.1| GENE 26 23327 - 24394 1062 355 aa, chain - ## HITS:1 COG:SA1730 KEGG:ns NR:ns ## COG: SA1730 COG4362 # Protein_GI_number: 15927488 # Func_class: P Inorganic ion transport and metabolism; E Amino acid transport and metabolism # Function: Nitric oxide synthase, oxygenase domain # Organism: Staphylococcus aureus N315 # 1 355 1 357 358 536 72.0 1e-152 MLLEEATNFIQTMYGELNYSNHTISKRITEIEKEINRTGTYTHTYEELNYGAKMAWRNSN RCVGRLFWESLNVVDARDSYTEQHFLDALHNHLNKATNGGKIKPYITIFSSTDAPKIYNN QLIRYAGYEDKGDPSEREITQLANHLGWKGKGSDFDVLPLIYQLPNSPIKYHEFPASLIK EVDIEHDQFPKLKDLHLKWYGVPIISNMDLKIGGITYPTAPFNGWYMVTEIAVRNFTDTY RYNLLEKVAETFEFGTLKNNSFNKDRTLVELNYAVYHSFKSQGVSIVDHLTAAKQFELFE EKEEQHHRDVTGKWSWLAPPLSPTLTANYHHGYKNIIKDPNFHYKKATPMKCPFH >gi|312979650|gb|ACRM01000015.1| GENE 27 24573 - 26042 1473 489 aa, chain + ## HITS:1 COG:SA1729 KEGG:ns NR:ns ## COG: SA1729 COG1488 # Protein_GI_number: 15927487 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 489 1 489 489 858 84.0 0 MYRYEDDSLMLHNDLYQINMAESYWNDGIHERNAVFDLYFRNMPFGSGYAVFNGLKRMIQ FIENFHFSDSDIEYLQSIGYKNDFLKYLKNLKFTGNIRAMQEGELCFGNEPLLRVEAPLI QAQLIETILLNIVNFHTLITTKASRIRQVAPQDTLMEFGTRRAQEIDAAVWGARAAYIGG FDSTSNVRAGKLFGIPVSGTHAHALVQTYGDEYKAFKIYAERHKNCVFLVDTFHTLKSGV PTAIKVAKELGDSINFIGIRLDSGDIAYLSKKARRMLDDAGFKDAKIIASNDLDEQTITS LKAQGAKVDSWGIGTKLITGYDQPALGAVYKLVAVENNEGEYVDRIKLSNNAEKVTTPGK KKVYRIINTKTGKAEGDYITLEHENPNKEKPLKMFHPVHTYKMKHVKHFEAIDLHHSIFE NGKLVYDLPSEKETQDYLKQSLSQLWEENKRYLNPQEYPVDLSTSCWNNKQKRILEVTEH VKEMEEDND >gi|312979650|gb|ACRM01000015.1| GENE 28 26035 - 26871 1131 278 aa, chain + ## HITS:1 COG:SA1728 KEGG:ns NR:ns ## COG: SA1728 COG0171 # Protein_GI_number: 15927486 # Func_class: H Coenzyme transport and metabolism # Function: NAD synthase # Organism: Staphylococcus aureus N315 # 1 272 1 272 273 427 80.0 1e-119 MTNLQDIVVKEMKVKKHIDSQQEIREIIQFIKNYVQSHTFIESLVLGISGGQDSTLTGKL AQLAVEELRKEGRECQFIAVKLPYGKQKDADEVEDALHFIQPDEVITVNIKPAVDQSVAS LKEAGIELTDFQRGNEKARERMKVQFSIASNRSGIVIGTDHSAENITGFYTKYGDGAADI APIFGLDKRQGRQLLEYLEAPTHLYEKVPTADLEDDKPQLPDEEALGVTYNQIDDYLEGK EVPSDAKTTIENHYVKNAHKRELAYTRYTWPKHSHTKE >gi|312979650|gb|ACRM01000015.1| GENE 29 26982 - 27587 814 201 aa, chain + ## HITS:1 COG:SA1727 KEGG:ns NR:ns ## COG: SA1727 COG4843 # Protein_GI_number: 15927485 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 201 1 200 200 327 83.0 1e-89 MSVITSNPWIMILAIFIINVFYVTFLTMRTILTLKGYRYMAAVVSFLEVLIYVVGLGLVM SSLDQIQNIIAYAFGFSIGIIVGMKIEEKLALGYTVVNVTSAEYELDLPKELRNLGYGVT HYEAHGRDGSRMVMQILTPRRYERKLMETVRSLDEKAFIIAYEPRAIHGGFWTKGVRTKK VKAYEVEEIESVVEHSEVQGK >gi|312979650|gb|ACRM01000015.1| GENE 30 27568 - 27750 221 60 aa, chain + ## HITS:1 COG:no KEGG:SH1042 NR:ns ## KEGG: SH1042 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 56 1 56 56 82 76.0 5e-15 MKFKVNENETISDCIARMRKEGYMPVRRIEKPVYFEDKQGNIKILRQDIQFVGKKIENDI >gi|312979650|gb|ACRM01000015.1| GENE 31 27973 - 29268 1714 431 aa, chain + ## HITS:1 COG:SA1724 KEGG:ns NR:ns ## COG: SA1724 COG0015 # Protein_GI_number: 15927482 # Func_class: F Nucleotide transport and metabolism # Function: Adenylosuccinate lyase # Organism: Staphylococcus aureus N315 # 1 430 1 430 431 786 93.0 0 MIERYSREEMSSIWTDQNRYEAWLEVEILACEAWSELGYIPKDDVKKIRENAKVDVNRAK EIEQETRHDVVAFTRQVSETLGEERKWVHYGLTSTDVVDTALSYVIKQANEIIEKDIERF IKVLEEKAKKYKYTLMMGRTHGVHAEPTTFGVKMALWYTEMKRNLKRFKEVRKEIEVGKM SGAVGTFANIPPEIESYVCKHLGIDTAPVSTQTLQRDRHAYYIATLALIATSLEKFAVEV RNLQKTETREVEEAFAKGQKGSSAMPHKRNPIGSENITGISRVIRGYITTAYENVPLWHE RDISHSSAERIMLPDVTIALDYALNRFTNIIDRLTVFEDNMRNNINKTFGLIFSQRVLLA LINKGMVREEAYDKVQPKAMKSWETKTPFRELIEQDSTITNVLSKEELDECFDPKHHLNQ VDTIFKRANLE >gi|312979650|gb|ACRM01000015.1| GENE 32 29373 - 29675 433 100 aa, chain + ## HITS:1 COG:SA1723 KEGG:ns NR:ns ## COG: SA1723 COG4496 # Protein_GI_number: 15927481 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 100 1 100 100 169 92.0 2e-42 MQIEKLRGEALDELFDAILTLKDREECYQFFDDLCTVNEIQSLSQRLQVAKMIKQGFTYA TIEQKSGASTATISRVKRSLQWGNDAYTMILDRLNVETKE >gi|312979650|gb|ACRM01000015.1| GENE 33 29835 - 30527 872 230 aa, chain + ## HITS:1 COG:SA1722 KEGG:ns NR:ns ## COG: SA1722 COG1646 # Protein_GI_number: 15927480 # Func_class: R General function prediction only # Function: Predicted phosphate-binding enzymes, TIM-barrel fold # Organism: Staphylococcus aureus N315 # 1 230 1 230 230 340 72.0 2e-93 MYDIRKWQHVFKLDPAKEISDENLEALCMSDTDAIMIGGTDDVTEDNVIHLMSRVRRYPL PLVLEVSNLDSVMPGFDFYFIPSILNSNDVTYHNGLLHKALKQYGHMINFEEVMLEGYVV LNPDSKVAKLTQSNTQLDVEDIEAYAQLVEEMYKLPILYLEYSGTYGDKDIVKATSQMLT HTQLFYGGGISSLTEAKEMKNYADTIIVGNIIYSDIKKALKTVKIKKESK >gi|312979650|gb|ACRM01000015.1| GENE 34 30527 - 32719 2468 730 aa, chain + ## HITS:1 COG:SA1721 KEGG:ns NR:ns ## COG: SA1721 COG0210 # Protein_GI_number: 15927479 # Func_class: L Replication, recombination and repair # Function: Superfamily I DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 1 730 1 730 730 1251 87.0 0 MNALVSNMNKEQSEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNILAITF TNKAAKEMKERVEHLVGEEAQVIWMSTFHSMCVKILRRDADRIGIERNFTIIDPTDQKSV IKDVLKNENIDSKRFEPRMFVGAISNLKNELKTPEDAMKEANDFHSQMVATVYSGYQRQL SRNEALDFDDLIMKTIRLFERVPDALEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFK NLCVVGDSDQSIYGWRGADIQNILSFEEDYPEAKTIFLEQNYRSTKTILTAANEVIKHNT ERKPKGLWTANNGGEKIKYYEAMTERDEAEYVVREIIKHRKSGKDYNDMAILYRTNAQSR VLEETFMKSNIPYTMVGGQKFYDRKEIKDLLSYLRIVANSNDDISLQRIINVPKRGIGPS SVDKIQRYALDNNISMFDALGEVDFIGLSKKVTQECIQFYEMVQNLIKEQEFLEISEIVE EILEKSGYRQMLEREQTIESRSRLENIDEFMSVPKDYEKDTPLEEQSLINFLTDLSLVAD IDEAQIDSGVTLMTMHSAKGLEFPIVFLMGMEESLFPHIRAIKSDDDHEMEEERRICYVA ITRAEEVLYITHATSRMLFGRSQANLPSRFLKEIPEELLETPAKSKRQTITSKSTTPSKR GFSKRTTSTKKQVSASDWKVGDKVTHKSWGEGMVSNVSEKNGSVELDIIFKSEGPKRLLA QFAPIEKKED >gi|312979650|gb|ACRM01000015.1| GENE 35 32723 - 34726 2306 667 aa, chain + ## HITS:1 COG:SA1720 KEGG:ns NR:ns ## COG: SA1720 COG0272 # Protein_GI_number: 15927478 # Func_class: L Replication, recombination and repair # Function: NAD-dependent DNA ligase (contains BRCT domain type II) # Organism: Staphylococcus aureus N315 # 1 665 1 665 667 1105 83.0 0 MDNIQNRVNELHDLLNQYSYEYYVKDNPSVPDSEYDKLLRELIDIENAHPELKTDDSPTV RVGGEAQSSFEKVNHETPMLSLGNAFNEEELRRFDERIREHIGNVEYMCELKIDGLAVSL KYEDGRFVQGLTRGDGTTGEDITENLRTIHAIPLKIKEPLNVEVRGEAYMPRRSFMRLND EREKNEEQPFANPRNAAAGSLRQLDPKLAAKRKLSVFLYSVNDFTDFSATTQSDALDELD RLGFKTNHERARVEDIEGVLEYIKKWTKQREQLSYDIDGIVIKVNDLDQQDEMGFTQKSP RWAIAYKFPAEEVVTELKDIELSIGRTGVVTPTAILEPIRVAGTTVSRASLHNEDLIKER DIRIGDSVIVKKAGDIIPEVVRSIIDRRPNDAKPYHMPTHCPSCGHELVRIEGEVALRCI NPKCQAQLVEGLIHFVSRQAMNIDGLGNKIIQQLYHHQLIKDVGDIFYLTKEDLLPLERM GTKKVENLLSAIEHAKQNSLEHLLFGLGIRHLGAKASQILAEKFETMDRLLKVTEEELVA IHDIGDKLAQSVVTYLDNEDIKALIEKLKDKNVNMTYKGVKSSEIEGHPEFQNKTIVLTG KLQQMTRKEATTWLEMQGAKVTSSVTKSTDLVIAGEDAGSKLSKAEQFGTEIWSESQFIE KQNEIAE >gi|312979650|gb|ACRM01000015.1| GENE 36 34738 - 35298 575 186 aa, chain + ## HITS:1 COG:SA1719 KEGG:ns NR:ns ## COG: SA1719 COG4851 # Protein_GI_number: 15927477 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Staphylococcus aureus N315 # 1 186 1 186 399 237 70.0 1e-62 MKRLLLLVITSLMILTACGNGNDKNSQSNNKQQEQNSNNVKTVATDQEVQGDNYRTILPF KESQARGVLQDNMANSYNGEDFENGLLHLSKSVFPTDNFLYQDGQYLDKNTVNAYLNPKY SKDEIDHMSESEKESKKATENLGLNPSHDGETKPEKIAESSPAYLSNILEQDFYDTNDTK GKKLKA >gi|312979650|gb|ACRM01000015.1| GENE 37 35313 - 35936 614 207 aa, chain + ## HITS:1 COG:SA1719 KEGG:ns NR:ns ## COG: SA1719 COG4851 # Protein_GI_number: 15927477 # Func_class: R General function prediction only # Function: Protein involved in sex pheromone biosynthesis # Organism: Staphylococcus aureus N315 # 1 207 193 399 399 287 76.0 8e-78 MNSVYYYQKEKDGETYSKSLDNKEIEKQGKAMAQELLTRLRANKDLKNIPIHFAIYVQSS QDAIAPGHFIANTIVDDKQTKINKWNKIDEISALLPSTEAEKYDKNLNNNFKQFNDDLQS YFSNFTQAIGKVKFVDKKPNRLVIDLPIDYYGQAETIGITQYVTEQAKKYFDNIDSYEIR IKDGNNSRALISKTKDDKDPQVHIYSN >gi|312979650|gb|ACRM01000015.1| GENE 38 35996 - 37534 1936 512 aa, chain - ## HITS:1 COG:SA1718 KEGG:ns NR:ns ## COG: SA1718 COG0591 # Protein_GI_number: 15927476 # Func_class: E Amino acid transport and metabolism; R General function prediction only # Function: Na+/proline symporter # Organism: Staphylococcus aureus N315 # 1 512 1 512 512 769 81.0 0 MFVLGANLGTHANTSWQTYIMIAIYFIILLVIGYYGYKQATGNLSEYMLGGRNIGPYITA LSAGASDMSGWMIMGLPGSVYSTGLSTIWITIGLTIGAYVNYLVVAPRLRVYTEVAGDAI TLPDFFKNRLNDKHSIIKIISGLIIVIFFTLYTHSGFVSGGKLFESAFGLNYHLGLISVA IIVILYTFFGGYLAVSITDFFQGVIMLIAMVMVPIVALIQLSGWDTFHQVAEMKPTNMDL FRGTTFLGMISLFAWGLGYFGQPHIIVRFMSIKSHKLLPKARRLGISWMTVGLLGAVGVG LTGIAFISKNHIKMDDPETLFIIMSQVLFHPLVGGFLLAAILAAIMSTISSQLLVTSSSL TEDFYKLIRGEEHAQSHQKEFVLVGRLSVLAVAIVALAIAWSPNDTILNLVGNAWAGFGA AFSPLVLFSLYWKKLTREGAISGMIAGALVVIIWIVWVKPLANINELFGMYEIIPGFISS VIVTYLVSIFTYKSDYSIEQQLNQVKTIVREK >gi|312979650|gb|ACRM01000015.1| GENE 39 37960 - 38262 618 100 aa, chain + ## HITS:1 COG:SA1717 KEGG:ns NR:ns ## COG: SA1717 COG0721 # Protein_GI_number: 15927475 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit # Organism: Staphylococcus aureus N315 # 1 100 1 100 100 146 96.0 9e-36 MTKVTREEVEHIAHLARLQISPEETEEMANTLESILDFAKQNDSADTEGVEPTYHVLDLQ NVLRDDKAIEGIPQELALKNAKETEDGQFKVPAIMNEEDA >gi|312979650|gb|ACRM01000015.1| GENE 40 38264 - 39721 443 485 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163737840|ref|ZP_02145257.1| 30S ribosomal protein S4 [Phaeobacter gallaeciensis BS107] # 5 477 6 456 468 175 30 7e-43 MSIRYESVETLSEMIKNKEIKPSEVVKDIYDAIEETDPTIKSFLALDKENAIKKAKELDE LQAKDQFEGKLFGIPMGIKDNIITKDVETTCASKMLEGFVPIYESTVMNKLHQENAVLIG KLNMDEFAMGGSTETSYFKKTVNPFDHQAVPGGSSGGSAAAVAAGLVPFSLGSDTGGSIR QPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPITRNVKDNAMVLEAIAGADKNDSTS APVEDVDFTSEIGKDIKGLKIALPKEYLEEGVNEEVKTSVKQAVETLKSLGAEVDEVSLP NTKYGIPSYYVIASSEASANLARFDGIRYGYHSKEAQTLEELYKMSRSEGFGDEVKRRIF LGTFALSSGYYDAFYNKSQKVRTLIKNDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLT MYANDLLTTPVNLAGLPGISVPCGQSNGRPIGLQFIGKPFDEKTLYRVAYQYETQFNLHD AYEKL >gi|312979650|gb|ACRM01000015.1| GENE 41 39734 - 41161 1965 475 aa, chain + ## HITS:1 COG:SA1715 KEGG:ns NR:ns ## COG: SA1715 COG0064 # Protein_GI_number: 15927473 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) # Organism: Staphylococcus aureus N315 # 1 475 1 475 475 859 94.0 0 MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNRRAVDWAM RASMALNMDIATNSKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITR LHMEEDAGKSTHKDGYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVS DCKMEEGSLRCDANISLRPHGQKEFGTKTELKNLNSFNYVRKGLEYEEKRQEEELLNGGT IGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYVDDEWKERVRQTIPELPDERK AKYVNELGLPEYDAHVLTLTKEMSDFFEGAIEHGADVKLTSNWLMGGVNEYLNKNQVDLE DTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAENGGEAKQIMEDKGLVQISDEATLLK FVNEALDNNPQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQKVNQLLKQELDKR >gi|312979650|gb|ACRM01000015.1| GENE 42 41476 - 42393 1065 305 aa, chain + ## HITS:1 COG:SA1714 KEGG:ns NR:ns ## COG: SA1714 COG1597 # Protein_GI_number: 15927472 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Staphylococcus aureus N315 # 1 302 1 302 315 546 88.0 1e-155 MRKRARIIYNPTSGKELFKRTLPDVLIKLERAGYETSAYATEREGDATLEAERALEQNYD IIIAAGGDGTLNEVVNGIAEQPNRPKLGIIPMGTVNDFGRALHLPNDIMGAVDVIIKGHT TKVDIGKMNNRYFINLAAGGKLTQVSYETPSRLKSIVGPFAYYIKGFEMLPQMKAVDLRI EYDNEVFQGEALLFLLGLTNSMAGFEKLVPDAKLDDGYYTLIIVEKANLAELGHIMTLAS RGEHTKHPKVIYKKAKSINISSFTDMQLNVDGEYGGKLPANFLNLKQHIEVCTPKDIYND ELSEK >gi|312979650|gb|ACRM01000015.1| GENE 43 42525 - 43889 1120 454 aa, chain + ## HITS:1 COG:SA1713 KEGG:ns NR:ns ## COG: SA1713 COG2265 # Protein_GI_number: 15927471 # Func_class: J Translation, ribosomal structure and biogenesis # Function: SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase # Organism: Staphylococcus aureus N315 # 3 452 4 453 453 664 69.0 0 MMINKNDVIKGKVIDLTHEGHGVIKLDRYPIFVPNVLIDEEVEFKVIKVKKNFAIGKLIK VLKQSEQRVIPPCIYYEKCGGCQLQHMSYESQLKMKKQQVVNLFHKKAKLEETVIHDTIG MDHPWRYRNKSQLPVGKDKNNKTIMGYYRQRSHDIIDMDSCLIQDEKQQELMNDIKQWLN ELNVSIYNEKNKKGLLRHVVIRTSHYTNEVMIIFVTNCSKFKEAETLVHRLTEVYPNITS IKQNINNSHSNVIMGKQSMTLYGKDKITDQLSETIFEISDQSFYQINSVQTEKLYQKAID YAQLSGNEIVLDTYCGIGTIGLYMAPVAKHVYGVEIVPSAIQDAKQNALINHFDNTTFEC GKAEEVIIEWKQKGIEPDVIMVDPPRKGCDQVFIETLLELAPKRIIYISCNPSTQQRDAQ LLANLYYLKEITPVDMFPHTTHIETVALFERKTL >gi|312979650|gb|ACRM01000015.1| GENE 44 44026 - 44574 248 182 aa, chain + ## HITS:1 COG:no KEGG:SH1057 NR:ns ## KEGG: SH1057 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 182 1 182 182 187 57.0 2e-46 MHKIDLSHNRIKISKLLTIQVVMMLFAILVTYKWAINYVDIIEQRFLTNVIYGILGFIGV LIIHELIHKCLFFIFSKGQKPQLKYKNGILFIYLSSKYFNKWQFCAVMLAPLVIITIGLM ISFYHFAYSSIIFISSIHIGYCLIDIYLTAITIINKFKYIRSTDEGIFMYHHLPISINND YE >gi|312979650|gb|ACRM01000015.1| GENE 45 44683 - 45753 1041 356 aa, chain + ## HITS:1 COG:SA1711 KEGG:ns NR:ns ## COG: SA1711 COG0389 # Protein_GI_number: 15927469 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 558 77.0 1e-159 MTERRIVHIDMDCFYAQVEMRDNPKLQGKPVIVGGKASHRGVVSTASYEARKYGVHSAMP MSQAHKLCPNGYYVRARFDVYREVSSKIMEIFKQYTEIVEPLALDEAYLDITHLVKPHRS ASKIASNIRKDIFNKTGLTSSAGVSYNKYLAKLASGMNKPNGMMVIHYENVHDILMNLDI GDFPGVGKASKKIMHEHDIYTGKDLYSKSEFELIRWFGKKGRGLYQKVRGIDDSEVKASR IRKSVGTERTFSTDINDDEAILQKIWELSGKTSERLTQLQKSGTTVTVKIKTHRFETYSK QRSLREAVSKDIDIYNIAYDLYHELKDPDVPIRLIGVTVGHLEQSTYQNMTIYDFI >gi|312979650|gb|ACRM01000015.1| GENE 46 45781 - 46338 371 185 aa, chain - ## HITS:1 COG:SA1710 KEGG:ns NR:ns ## COG: SA1710 COG0847 # Protein_GI_number: 15927468 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, epsilon subunit and related 3'-5' exonucleases # Organism: Staphylococcus aureus N315 # 1 183 1 183 184 268 69.0 5e-72 MVKNSFIALDFETANKKRTSICSVGMVKVVDNEIVETFYTLVNPHDYFSETHIHVHGIHP KDVKDAPDFKEVFPYMLQFINQLPVVAHNAAFDMGVLHQSLKHLNIAVPSLTYFCSYQLA RRTIKAYRYGLKHLMNHYNLNFHGHHDALNDAKACAMITYRLLKHYDSLQSVLQFHGKNL KDRNR >gi|312979650|gb|ACRM01000015.1| GENE 47 46580 - 47890 1456 436 aa, chain + ## HITS:1 COG:SA1708 KEGG:ns NR:ns ## COG: SA1708 COG0769 # Protein_GI_number: 15927466 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Staphylococcus aureus N315 # 1 436 1 436 437 749 83.0 0 MRQWTATHLAKLARKISIAAGKKGTDLPGQIARKVDQNILRKLASQVDDIVFISGTNGKT TTSNLIGHTLKANNIEIIHNNEGANMAAGITSAFIMKNVKGIKVAVIEIDEGSIPKVLKE VTPSMMVFTNFFRDQMDRFGEIDIMVNNIAKSISNKGIKLILNADDPFVSRLKIASDTIV YYGMKAHAHEFEQSTMNESKYCPNCGRLLTYDYTHYNQLGHYHCECGFKRETPKYEVSQF EVQPFIDMDVNDAHFEMKIAGDFNAFNALAAYSVLKELGLNNDAIRKGFNTYTSNNGRMQ YFKRGQKEAMINLAKNPAGMNVSLSVGDQLKEKKVYVISLNDNAADGRDTSWIYDADFEK LRNQNIEKIIVTGTRAEELQLRLKLAEVDVPIILEKDIYKATALTMNYAGFTVAIPNYTS LSPMLEQLNRSFAGGR >gi|312979650|gb|ACRM01000015.1| GENE 48 47893 - 48609 855 238 aa, chain + ## HITS:1 COG:SA1707 KEGG:ns NR:ns ## COG: SA1707 COG3442 # Protein_GI_number: 15927465 # Func_class: R General function prediction only # Function: Predicted glutamine amidotransferase # Organism: Staphylococcus aureus N315 # 1 238 1 238 243 399 83.0 1e-111 MYELTVFHFMSDKLNLYSDIGNIIALKQRAKKRNINLKVIEINETEGVTLENCDIFFIGG GSDREQSIATKELSKIKTILKDAIEDGMPGLTICGGYQFLGTKYITPDGTELEGLGILDF YTKSKTDRLTGDIVIKSDTFGTIVGFENHGGRTYHNFDTLGHVVTGYGNNDDDKKEGIHY KNLLGTYLHGPILPKNHELTDYLLEKACERKGIPFTPKQLDNTEEEAAKYVIIERSEK >gi|312979650|gb|ACRM01000015.1| GENE 49 48654 - 49643 660 329 aa, chain - ## HITS:1 COG:SA1705 KEGG:ns NR:ns ## COG: SA1705 COG4129 # Protein_GI_number: 15927463 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 326 3 327 328 419 64.0 1e-117 MNQWYKHIIGARTIKTGLATFLTTLFCLLLNLTPIFAILTAIVSIEPTAKASLRKGYRRL PATVIGALFAVIFTYIFGDQSPFTYTFSAIFTILACTKLNLQVGTTVAVLTSVAMIPGIH EAYLFNFFSRLLTALIGLVTAGLVNFFVLPPKYYHQLEENLIHSENKLYELFASRCHELL LGKFDSDNSNISLATLSDMNKKTDTLMNYQRDELRYHKNNEDKWKQLKNMSNRAYIDRLL ATHLSNIIYLPKNVNICFTTEEKMAIIKISNSINNIPLDGVFKRESKSVSTLKSSVKILE EFDKNQIKSHVIYEILLIYNLLDNRFVKA >gi|312979650|gb|ACRM01000015.1| GENE 50 49817 - 50569 1144 250 aa, chain + ## HITS:1 COG:SA1704 KEGG:ns NR:ns ## COG: SA1704 COG0024 # Protein_GI_number: 15927462 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionine aminopeptidase # Organism: Staphylococcus aureus N315 # 1 250 1 250 252 431 88.0 1e-121 MIVKTDEELQALKEIGYICAKVRDTMQEATKPGITTKELDNIAKELFEEHGAISAPIHDE KFPGQTCISVNEEVAHGIPGKRVIREGDLVNIDVSALKNGYYADTGISFVVGEADNPLKQ KVCDVALEAFDAAMAKVKPGTKLSNIGKAVHATARKNDLTVIKNLTGHGVGQSLHEAPSH VMNYYDPKDKTLLKEGVVIAVEPFISSKATFVTEGKNDWAFETKDKSFVAQIEHTVIVTK DGPILTTKID >gi|312979650|gb|ACRM01000015.1| GENE 51 50618 - 51628 1020 336 aa, chain - ## HITS:1 COG:SA2489 KEGG:ns NR:ns ## COG: SA2489 COG3376 # Protein_GI_number: 15928283 # Func_class: P Inorganic ion transport and metabolism # Function: High-affinity nickel permease # Organism: Staphylococcus aureus N315 # 1 336 1 337 338 488 81.0 1e-138 MNTIKKRDLSWLPYIVIVILLHIIGFSFLFIANTNHLLFGMGILAYTLGLRHAFDADHIA AIDNTVRKLLQQKRNPVGVGFYFSIGHSTVVFLMSVLLGISVKWAKDELPYFQNIGGIIG TLVSGFFLLLIGILNLFILISLIKLFARLRNEHIREEELDALLESRGFITRFIAPYFKLI SRSWHVLPLGFLFGLGFDTASEIALLALSSGASQQSISFLGILSLPILFAAGMSLLDTLD GIIMKSAYNWAFFNPIRKIYYNITITAISVIAALIIGLIELLQIMEDKLHLKGTFWNIIQ SIQFDYLGYILVALFLITWLISTLIWKFGKVEQRWS >gi|312979650|gb|ACRM01000015.1| GENE 52 51856 - 52242 311 128 aa, chain + ## HITS:1 COG:no KEGG:SH1068 NR:ns ## KEGG: SH1068 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 128 1 128 128 144 67.0 1e-33 MNYLDLYLQHFLKIIIKNNINDYRSLLDDKLQNMERYIKYLKNKKAKMNTLIDSLSATLE NKYIDMINMYNIKNAQEVHNYEIDLLKQRLDKFEAYYAKIEANIHRCTKERIATEEQYAM IEQMSYVA >gi|312979650|gb|ACRM01000015.1| GENE 53 52263 - 52964 553 233 aa, chain + ## HITS:1 COG:SA1702 KEGG:ns NR:ns ## COG: SA1702 COG4758 # Protein_GI_number: 15927460 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 233 1 233 233 315 79.0 5e-86 MTRKYISTELLIIFTALMIIANFYYIFFEKIGYLFILLLGCILIYVGYLYFHKVRGLLAF WIGALLIAFTLLSNKYTIIILFIFLVIIIIRYLVFKFKPLKIAASEEEVTSPQFIKQRWL GEQRTPVYVYKWEDVQIQHGVGDIHIDMTKAANIKENNTIVVRHILGKVQLIVPVNYNIN LHMAAFYGTAYINGEAYKVENNHVQVEEKPKEENYSVNIYVSTFIGDVEVIYR >gi|312979650|gb|ACRM01000015.1| GENE 54 52961 - 53995 1280 344 aa, chain + ## HITS:1 COG:SA1701 KEGG:ns NR:ns ## COG: SA1701 COG4585 # Protein_GI_number: 15927459 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 343 1 343 347 545 90.0 1e-155 MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLVIILLC IIVGSVLAYKINQQNDWIKNQIEHAIEGETVGINDKNIELYNETIDIYQMLVPLNQELQR LRIKTQNLTNENYNMNDIKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETELAP PLNQQIPVLEKMIQESQLEMRALLLHLRPLGLKDKSLGEGIKDLVIDLQKKVPMKVIYDI QDFKVPKGIEDHLFRITQEAISNTLRHSNGTKVTVELFNHQDYLLLRIQDNGKGFNVDEK VEQSYGLKNMRERALEIGATFHIVSLPDSGTRIEVKAPLTKEEG >gi|312979650|gb|ACRM01000015.1| GENE 55 53997 - 54626 882 209 aa, chain + ## HITS:1 COG:SA1700 KEGG:ns NR:ns ## COG: SA1700 COG2197 # Protein_GI_number: 15927458 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 209 1 209 209 338 94.0 3e-93 MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGSSGKEAIEKAHTLNPDLILMDLLMND MDGVEATTQIKKDLPHIKVVMLTSFIEDKEVYRALDAGVDSYILKTTSASDIAEAVRKTY RGESVFEPEVLVKMRNRMKKKAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVK THVSNILSKLEVQDRTQAVIYAFQHNLIQ >gi|312979650|gb|ACRM01000015.1| GENE 56 54706 - 55914 1272 402 aa, chain - ## HITS:1 COG:SA1699 KEGG:ns NR:ns ## COG: SA1699 COG1295 # Protein_GI_number: 15927457 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 399 1 405 405 474 70.0 1e-133 MSKKNQSNSKYLNSIKEKETENKEKIKVDRTYVEPQEFQSKKPKKDKQVFFVSRLNKPAK YTKNSNFLSYLIYRIGKDDASGLAAQMTYHFVLALFPMLIFLLTLLPLFQIDPQQIKDLV SQNAPAETADVVTKIFKDITSNSSGSLLSVGLILAIWSASNGMTAIMNSFNVAYDVEDAR NPIVLKLLSILFTIVMAIVLAIALTLPTFGNFIKDHLFGPLGLDQQVAWIFDLVRILLPL IVIIILFLTLYSVAPNVKTKFKSVYPGAIFTSIVWLLGSFAFGWYLSNFGNYSKTYGSLA GIIILLLWIYITCFIIIIGAEINAVIHQRHVIKGSTPEEAALKHDDNNENHYNENTKYEY DSTASSKYEKNYDVDPTPNDKHSEQESFVDKIKDKFDKDNNK >gi|312979650|gb|ACRM01000015.1| GENE 57 56006 - 56287 427 93 aa, chain - ## HITS:1 COG:no KEGG:SH1074 NR:ns ## KEGG: SH1074 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 92 1 92 94 141 89.0 6e-33 MENKFVPGIIIGAIVGGAATLADKSTRNALVQSFKDIKEGNRSRKPSKITSIKNEVLYWK DTIEEIRRNNPELEKSIKDAKDTFVNRKNNRLS >gi|312979650|gb|ACRM01000015.1| GENE 58 56293 - 56757 518 154 aa, chain - ## HITS:1 COG:SA1697 KEGG:ns NR:ns ## COG: SA1697 COG0394 # Protein_GI_number: 15927455 # Func_class: T Signal transduction mechanisms # Function: Protein-tyrosine-phosphatase # Organism: Staphylococcus aureus N315 # 1 154 1 154 154 279 87.0 1e-75 MIDVAFVCLGNICRSTMAEAIMRQRLKERGISDVIVHSRGTGRWNLGEPPHQGTQKILKQ HHIPFDGIVSELFEPDDDFDYIIAMDQSNVDNIKSINPNLKGQLFKLLEFSNMEETDVPD PYYTNNFEGVYDMVQSSCDNLIDFIVKDANLKEG >gi|312979650|gb|ACRM01000015.1| GENE 59 56899 - 57105 337 68 aa, chain + ## HITS:1 COG:SA1696 KEGG:ns NR:ns ## COG: SA1696 COG4840 # Protein_GI_number: 15927454 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 68 1 68 68 73 55.0 7e-14 MAQNNEQMIKNIRKKLNIVNQSLINPEKFKDTDTKDIKDIHDFVMSKDSFSPSEITAIAD ELGNLRHE >gi|312979650|gb|ACRM01000015.1| GENE 60 57117 - 58364 1573 415 aa, chain + ## HITS:1 COG:SA1695 KEGG:ns NR:ns ## COG: SA1695 COG2309 # Protein_GI_number: 15927453 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase (aminopeptidase T) # Organism: Staphylococcus aureus N315 # 5 414 3 412 415 661 79.0 0 MANQDYQDKLKQYAELLVKVGMNVQQNQPVFIRTSVETIDLTRLIVEVAYQEGASDVRVV YTDPILERLKYENEAVDYFENHAVKAYDVEERMDYARRGAANLALISGDPDLLNGIDAEK LKASQFNYGQAFKGYMEGSQKNAFPWVVAAFPSKAWAKRVYPNLPEEEAYSQFIDEVFEI VRVDGNDPITNWEQHVKSLSVHANKLQEKNYKALHYMSEDTDLTVGLPKGHIWEDATSYV NGNQQPFIANIPTEEVFTAPDRNHVDGYVTNKLPLSYNGNIIDGFTLTFKNGEIIDVKAE KGEEVLKDLISTDEGSKRLGEVALVPDDSPISNRNTIFYNTLFDENASCHLAIGSAYGFN IKGGTEMSTEEKIASGLNDSNVHVDFMIGSSDLTIYGILQDGSKELVFENGNWAQ >gi|312979650|gb|ACRM01000015.1| GENE 61 58397 - 58930 585 177 aa, chain + ## HITS:1 COG:SA1694 KEGG:ns NR:ns ## COG: SA1694 COG1607 # Protein_GI_number: 15927452 # Func_class: I Lipid transport and metabolism # Function: Acyl-CoA hydrolase # Organism: Staphylococcus aureus N315 # 1 176 1 176 176 253 72.0 1e-67 MSNSQVNKKSMSESKSIKTRQVFPQDTNHHHTMFGGSLMANIDEIAAITAMKHANAQVVT ASTDSVDFLRPIKTGDITSYEAMVSYAGSSSMEICVQIIIEDVLNKERHLAALSFLTFVA LDENGKPTRIPKVYPETKIEKWFYEGAPKRVQRRKERREDSKRTIEFLSEVQHIENI >gi|312979650|gb|ACRM01000015.1| GENE 62 59236 - 60381 1338 381 aa, chain - ## HITS:1 COG:SA1693_1 KEGG:ns NR:ns ## COG: SA1693_1 COG0535 # Protein_GI_number: 15927451 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductases # Organism: Staphylococcus aureus N315 # 1 220 1 220 220 390 84.0 1e-108 MTTSKIKQAISIYNDPWEAYNDIKQFDQLTLSNVEFTTTNLCNMRCSHCAVGYTLQTKDP DPLPMNLIYQRLDEIPNLRTMSITGGEPMFSKKSINNVVKPLLKYAHQRGIYVQMNSNLT LPQDRYLEIAEYIDVMHISHNWGTIQEFAEVGFGAMKKQPPLKAKLKLYEQMLDNASTLS DQGMFVSAETMLNQNTLPHLENIHKEIVNDMKCSRHEVHPMYPADFASQLNVLSLKDMKQ AIHHLLDIRDKNTWMLFGTLPIYPCINDENDQVLLERLRNEKNVTVRNDPDGRSRLNVNV FSGDVIVTDFGDENGTISNIKNDKLTDVFDAWLSTDLAKSLNCHCEAFQCLGPNVLVKNM YYPNTNFRENEIAMHTEHSFQ >gi|312979650|gb|ACRM01000015.1| GENE 63 60525 - 60686 337 53 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_02014 NR:ns ## KEGG: SAOUHSC_02014 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 53 1 53 53 65 86.0 4e-10 MDEKQTIEQIKTRLSKFLEDIDHVNPDEVSVKDIDEWIGLLDQLEEKVKLVSK >gi|312979650|gb|ACRM01000015.1| GENE 64 60796 - 61314 807 172 aa, chain + ## HITS:1 COG:SA1692 KEGG:ns NR:ns ## COG: SA1692 COG0693 # Protein_GI_number: 15927449 # Func_class: R General function prediction only # Function: Putative intracellular protease/amidase # Organism: Staphylococcus aureus N315 # 1 170 1 170 171 284 90.0 5e-77 MTKKVAIILADEFEDIELTSPKEALEEAGFETEVIGDTANAEVVGKHGEKVTVNVSIADA KPENYDALLIPGGFSPDNLRGDAEGRYGTFAKYFTKNDVPTFAICHGPQVLIDTDDLNGR TLTAVLNVRKDLSNAGANVVDESVVVDNNIVTSRVPDDLDDFNREIVKKLND >gi|312979650|gb|ACRM01000015.1| GENE 65 61591 - 61713 69 40 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLFLSIYTIKNQSQGVSLIFISLKFPSYFKEDREELFKFG >gi|312979650|gb|ACRM01000015.1| GENE 66 61766 - 62578 852 270 aa, chain + ## HITS:1 COG:SA1691 KEGG:ns NR:ns ## COG: SA1691 COG0744 # Protein_GI_number: 15927448 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Staphylococcus aureus N315 # 1 268 1 268 269 295 70.0 8e-80 MKRRQRDNYPKEKTTYDQNEPHYNTYYQPVGSPPKKKKSKRLFLRMLIIFIIIFALFTGL MYFLSSRANVDDLQTIENKSNFVSSDNMPNYVKGAFISMEDERFSKHHGFDIKGTTRALF STIGEHDVQGGSTITQQTVKNYYYNNERSFTRKLKELFVAHKVEQQYSKNQILSFYLNNI YYGNNQYDIESAANYYFGATTNQNNSYYPIITVLQSAMLASKVNAPSVYDINNVSNNFKN RIKVNLEKMRQQNYISDSQYQEALSQLNNY >gi|312979650|gb|ACRM01000015.1| GENE 67 62747 - 63550 967 267 aa, chain + ## HITS:1 COG:SA1690 KEGG:ns NR:ns ## COG: SA1690 COG2137 # Protein_GI_number: 15927447 # Func_class: R General function prediction only # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 266 1 266 272 299 69.0 3e-81 MPKITKIEVQKNNKERFNLFLDEAFEMGIDIDTLVKFNLKKNQMIDAAEMEKIQKYEHYR LGINMAIQYLSYKKRTEKEVSDYLKKNDINEMTVQKVIEYCYKEQYINHEDYAESLKNTM INTTDKGPEVFKQKLYQVGVEPNIIDRYIKRYEEEQPIESIIHVAKKIMKTKKGPVVKVK QKVMHSLIQKGYTIETAQNVLNELDFAQDEEVLDDLLQKDLEKVYNKQRRKHDGNTLKMK TIEALMRKGYNYDKIKIKLAESGILDE >gi|312979650|gb|ACRM01000015.1| GENE 68 63543 - 63857 327 104 aa, chain + ## HITS:1 COG:no KEGG:SH1088 NR:ns ## KEGG: SH1088 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 104 1 104 104 166 86.0 3e-40 MSDKRLSEMSEQELRHEIQLCKEKMRKAEMNGIMNEYDVYESKVIVAESYLVDRSKINIG RMYKLNDGSEQYFKVERLKGVFAWGYRINSTNPEEGLPIALLKI >gi|312979650|gb|ACRM01000015.1| GENE 69 63873 - 65390 1478 505 aa, chain + ## HITS:1 COG:SA1688 KEGG:ns NR:ns ## COG: SA1688 COG1134 # Protein_GI_number: 15927445 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 505 1 505 505 589 56.0 1e-168 MGSSIVLKLLNVTQYYRNQKNRKWYLPFGYGAEDIELNKISLHIYQGEALALIGEPGSSK TLIGRIMAQDIAPDRGKVVQSASIYYGDIKNKHLLNMSVKSYIEETQCLFNYETSSHIVD QIIKYAHLDDKSSIQVNKLSHSEYAQLILSVARVCKTEIIILSHILEYLDEAFLNKAKQL SKDYVSNDLSIIFVDDDISKISQVSNYVTWISHGQVRMEGYLNDVLPVFNDHERDRLSID DEETLKNFDLDWKKSRSRLPEMSYNFKRVERYKHVKVPDFIVKFWTLLVSTLIVLVLLGT LVVNNIGKIEIPINESQKKVQNQDTDPFENKLSYGIVLHDEVTLSNHQDIEMPKYSFVTI TGESASKYRLIVDDDTYEVGKNKIYYFNPAALYETHKFSTLAPYMKSNYSKYVDYFNTQL HKPHNQVKKTLVPEKDQRFVVPITQQPIKMLFNDEDKLTGFVFPIVDKSKLERKFNIKGN VWISKLSNGYLIADMKNSKWIYIEL >gi|312979650|gb|ACRM01000015.1| GENE 70 65369 - 66163 435 264 aa, chain + ## HITS:1 COG:no KEGG:SH1090 NR:ns ## KEGG: SH1090 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: ABC transporters [PATH:sha02010] # 11 256 1 246 253 172 51.0 9e-42 MDLYRIVGVNMIDTLILYFKHFPSLLHLAKAKVKETWKYDVILFLIQLIIISIIIGVMYL FNTEEIEKAQWIYRMIAFYTFVTIAYIIYKSFKLYNYDYLIAKSFQLTPIITPILNALIG AIIICVLSLVTSIFKPVNLETSVISFVYFILMSIIFIVFISITLGLLTLISKKVFKFYVI AIMMLFFLVPIIIIPNNKANMIDQILKINPLYYLIDGLSTSIVFGSVNMYNIVYHIYFIA FLVLIGVINFILTRLVAHKKYEYI >gi|312979650|gb|ACRM01000015.1| GENE 71 66280 - 67257 939 325 aa, chain - ## HITS:1 COG:SA1686 KEGG:ns NR:ns ## COG: SA1686 COG1988 # Protein_GI_number: 15927443 # Func_class: R General function prediction only # Function: Predicted membrane-bound metal-dependent hydrolases # Organism: Staphylococcus aureus N315 # 1 324 1 324 325 496 75.0 1e-140 MDTATHIAIGIGLTALATQDPAMSHSMTATATTLIAGSLIPDGDTVLKLKNNATYISHHR GITHSIPFTILWPILLAFIIYVIFPHVDVTHIWMWAQLAVFLHVFVDIFNSYGTQALRPI SNKWIQLGVINTFDPIIFLILCIGITLWLLGVHPYLVFFPIIGVLIIYYIVRFKMQSIIK SQALKHIHDEHHPVKIFVAPTMKFMKWRVAIQTENYDYVGRAYGRNITFSDKVKRQQFSP DTLLWQIKSNPEIRTFLKFSSIYRWQIRKLDDHTTEIRLIDLRYLNKGHYSFAAIAHLTQ DQKIDHSYIGWVFTEEKLQKKLYSH >gi|312979650|gb|ACRM01000015.1| GENE 72 67393 - 68439 465 348 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|46129221|ref|ZP_00155777.2| COG1194: A/G-specific DNA glycosylase [Haemophilus influenzae R2846] # 7 342 11 344 378 183 32 2e-45 MLNETTFKNNIVTWFEKNQREMPWRETTNPYYIWLSEVMLQQTQVKTVIDYYNKFIHRFP TIEALSEAKEAEVLKYWEGLGYYSRARNFHTAIKEVHHNYNAEVPSSPKVFGELKGVGPY TQAAVMSIAFNRPLATVDGNVFRVWTRLNNDHRDIKLQSTRKSFEKELEPFVQEEAGTFN QSMMELGATICTPKNPLCLFCPVQENCEAFRKGTTLDLPIKTKKQAKKIINQEVFLVRNQ KGQYLIEKRQEKLLNGMWQFPMFESPNGIQKLENKLNHSLTLSENIIFQLKHQFTHKTWN LNVYSVIEDINIDSAQLPDFMEWFDLENRDDYSFPVSMSKIYEFIVGK >gi|312979650|gb|ACRM01000015.1| GENE 73 68532 - 69074 622 180 aa, chain + ## HITS:1 COG:SA1684 KEGG:ns NR:ns ## COG: SA1684 COG3557 # Protein_GI_number: 15927441 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Uncharacterized domain/protein associated with RNAses G and E # Organism: Staphylococcus aureus N315 # 1 180 1 180 180 346 95.0 1e-95 MVKESIPKEGENIKIQSYKHDGNIHRVWSETTILKGTDHVIIGGNDHTLVTESDGRTWIT REPAIVYFHAEYWFNVICMFREDGIYYYCNLSSPFVCDEEALKYIDYDLDIKVYPNGKYH LLDEDEYEQHMKQMNYPHEIDVILRRNVDILQQWIEQKKGPFAPDFIKVWKQRYKKIRNY >gi|312979650|gb|ACRM01000015.1| GENE 74 69228 - 70964 239 578 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 340 562 2 226 245 96 29 3e-19 MIRRYLEFVKPYKYRIFATIIIGIIKFGIPMLIPLLIKYAIDGVINNGTLTTNEKFHHLA IAIGITLFIFLIVRPPIEYLRQYLAQWTSNKILYDIRKQLYDHLQALSARFYANNQVGQV ISRVINDVEQTKDFILTGLMNIWLDCVTIIIALSIMFFLDIKLTLAAIIIFPFYVFTVYF FFGRLRKLTRKRSQALAEVQGFLHERVQGMSVIKSFAIEDNEAKNFDKKNKNFLSRAFQH TSWNAYSFAAINTVTDLGPIIVIGVGSYLAITGSITVGTLAAFVGYLEQLFGPLRRLVSS FTTLTQSFASMDRIFQLIDEDYDIKNKKGAQPIEIKEGHIELKNVSFKYNEDESLVLKNI NLNINKGETVAFVGMSGGGKSTLINLIPRFYNVSEGEILIDSRNIKDYLTGSLRNQIGLV QQDNILFSDTVRENILLGRPDATEEEIIEAAKMANAHDFIMNLPNGYDTEVGERGVKLSG GQKQRLSIARIFLNNPPILILDEATSALDLESEAIIQDALDVLSKDRTTLIVAHRLSTIT HADKIIVMQHGQIVETGTHKELIAKKGEYEHLYSIQDL Prediction of potential genes in microbial genomes Time: Sun May 29 09:21:12 2011 Seq name: gi|312979649|gb|ACRM01000016.1| Staphylococcus hominis subsp. hominis C80 cont1.16, whole genome shotgun sequence Length of sequence - 5884 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 2, operones - 2 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 3/0.000 - CDS 26 - 1120 982 ## COG4129 Predicted membrane protein - Prom 1165 - 1224 7.9 - Term 1208 - 1256 8.1 2 1 Op 2 . - CDS 1275 - 2564 1747 ## COG0001 Glutamate-1-semialdehyde aminotransferase - Prom 2610 - 2669 5.5 + Prom 2560 - 2619 7.2 3 2 Op 1 2/0.000 + CDS 2645 - 3100 308 ## COG1225 Peroxiredoxin 4 2 Op 2 2/0.000 + CDS 3106 - 4056 844 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases + Prom 4064 - 4123 8.1 5 2 Op 3 . + CDS 4152 - 4601 391 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 4607 - 4642 3.1 + SSU_RRNA 5109 - 5884 99.0 # EU373358 [D:1..1518] # 16S ribosomal RNA # Staphylococcus sp. HNL18 # Bacteria; Firmicutes; Bacillales; Staphylococcus. Predicted protein(s) >gi|312979649|gb|ACRM01000016.1| GENE 1 26 - 1120 982 364 aa, chain - ## HITS:1 COG:SA1682 KEGG:ns NR:ns ## COG: SA1682 COG4129 # Protein_GI_number: 15927439 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 364 1 364 364 495 71.0 1e-140 MKLGARILKTGIAIILALFIASFLPDNVGLKSVAGISAIFAMQPNIYRSMKTISEQATGN LIGAILAVIMVTIFGKNIVIMGITVILLIAILYKLNLAHVATLAGVTALIIMGQHTGSFY LVATFRFILVMIGVLSASLVNLVFLPPKFETKIYHNAVNISSDIFIWFKLVINDTSEYHQ IKEDGEQLESRIIKLEQIYDYYHEERTFTRKAAFQQNRKKILFKEVVGTTRQAYEVLNRM ARYQNDLHNTNHHLLFQIKLELDSLTAYHEQILKSLSKKARYNVDDFDNQILNPQKKNLM DAFQYQLIQNPYQVEYSYSNIMQIIAAIEEYRYHLEHLDRLRLSFFTYHRNDTDIEIQDE DFDL >gi|312979649|gb|ACRM01000016.1| GENE 2 1275 - 2564 1747 429 aa, chain - ## HITS:1 COG:SA1681 KEGG:ns NR:ns ## COG: SA1681 COG0001 # Protein_GI_number: 15927438 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Staphylococcus aureus N315 # 1 429 1 429 429 757 91.0 0 MNFTESERLQKLSNEYILGGVNSPSRSYKAVGGGAPVVMREGHGAYLYDVDGNKYIDYLQ AYGPIITGHAHPHITEAIQDQAAKGVLYGTPTELEIDFSKKLRAAIPSLEKIRFVNSGTE AVMTTIRVARAYTKRNKIIKFAGSYHGHSDLVLVAAGSGPSQLGSPDSAGVPESVAREVI TVPFNDIESYKEAMSHWGDEVAAVLVEPIVGNFGMVKPQPGFLEEVNNITHEHGALVIYD EVITAFRFHYGAAQDLLNVYPDLTAFGKIVGGGLPIGGYGGRQDIMEHVAPLGPAYQAGT MAGNPLSMRAGIALLEVLEQDGVYEKLDALGKRLEDGLNKLIEKHHITATINRIYGSLTL YFTDEKVTHYEQVENSDSEAFAKFFKLMLNQGINLAPSKFEAWFLTTEHTEEDIDQTLEA ADYAFSQMK >gi|312979649|gb|ACRM01000016.1| GENE 3 2645 - 3100 308 151 aa, chain + ## HITS:1 COG:SA1680 KEGG:ns NR:ns ## COG: SA1680 COG1225 # Protein_GI_number: 15927437 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Staphylococcus aureus N315 # 1 150 1 150 151 212 70.0 2e-55 MLKIGDLFPKFELENQNGELITNENIMGEKTILYFYPRDNTPTCTTEACDFRDNIQYFND MKVKVYGISGDSRKKHENFIKKHHLNFDLLVDDEFKLSNAVGIYRLKKSFGKENMGIVRT TFVIDEAGYITNIIEKVKVKTQIDELKQILE >gi|312979649|gb|ACRM01000016.1| GENE 4 3106 - 4056 844 316 aa, chain + ## HITS:1 COG:SA1679 KEGG:ns NR:ns ## COG: SA1679 COG0111 # Protein_GI_number: 15927436 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 1 316 1 316 316 376 60.0 1e-104 MKIVSLKRLGNIENELIEKYPDISFSFYDKADNIPDNDKKELEVLIGYDGEINERFIKSC PNLKWIAWYATGVNNLPLEYIKNKGIILTNTRGIQSKQLSEYILTFILNDHKKMETSFIN QQKHIYDSTLTGKRLKDETILFLGTGAIAQDTVKLLTPFELKIIGVSKTGKQKEGFNQTY EINELDKLLGEADIIINTLPETKETYHLLNKHHFQLMKEDTLFINVGRGTIVEEHDLIEI LKEKLIRHAYLDVFENEPLESEHPLYDLDNVTITAHITGNDKENKKEATKIFERNLTRFL NKEEISENVVDLKDGY >gi|312979649|gb|ACRM01000016.1| GENE 5 4152 - 4601 391 149 aa, chain + ## HITS:1 COG:SA1678 KEGG:ns NR:ns ## COG: SA1678 COG0735 # Protein_GI_number: 15927435 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 148 1 148 148 257 84.0 6e-69 MSAEIESIEHELEQAIIALRKSGVRITPQRQAIVRFLISSHTHPTADEIYQALSPDFPNI SVATIYNNLRVFKKIGIVKELTYGDASSRFDFNTHNHYHVICERCGKIVDFHYPQLDEIE QLAQHVTNFDVTHHRMEIYGLCEECKNKE Prediction of potential genes in microbial genomes Time: Sun May 29 09:21:13 2011 Seq name: gi|312979648|gb|ACRM01000017.1| Staphylococcus hominis subsp. hominis C80 cont1.17, whole genome shotgun sequence Length of sequence - 1072 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 1071 1372 ## SH1184 hypothetical protein Predicted protein(s) >gi|312979648|gb|ACRM01000017.1| GENE 1 3 - 1071 1372 356 aa, chain + ## HITS:1 COG:no KEGG:SH1184 NR:ns ## KEGG: SH1184 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 355 9 334 530 209 52.0 1e-52 AFETNNTSNDLHGRGANQQEDVAQSNATKHYDRDAFETNNTGNDLHGRGANQQEDVAQSN ATKHYDRDTFETNNSGNDLHGRGVNQPNGDVYTNATKHYDRDAFETNNSGNDLHGHGVNQ LDQNNFVNTPHYNRDDYESYNHPKFSNQAASDTNQEIDYKTYYNDPRFKSRKHFIVSFIT GAIIGSTIGLLTKNKANQKIEDLKAKEQEVKDNYYSIKQQTEETIDNVRHKIEDLKNRKN TGISSDELAAQRRAIQSETSNHLADESPLAKEIQEAKAETTVKENNYFNNEHNSAEEIVA QQNAIKDELSTNLADESPQAQEIQEAKKEAIAKDEKQEETDALAAQRRAIQSETSS Prediction of potential genes in microbial genomes Time: Sun May 29 09:21:20 2011 Seq name: gi|312979647|gb|ACRM01000018.1| Staphylococcus hominis subsp. hominis C80 cont1.18, whole genome shotgun sequence Length of sequence - 2365 bp Number of predicted genes - 1, with homology - 0 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 112 88 ## + Term 159 - 225 31.6 + 5S_RRNA 11 - 125 97.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. + TRNA 135 - 210 94.8 # Val TAC 0 0 + 5S_RRNA 141 - 195 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. + TRNA 223 - 298 92.9 # Thr TGT 0 0 + TRNA 304 - 376 89.9 # Lys TTT 0 0 + TRNA 386 - 467 70.1 # Leu TAG 0 0 + TRNA 471 - 545 94.9 # Gly GCC 0 0 + TRNA 553 - 638 67.0 # Leu TAA 0 0 + TRNA 652 - 725 72.4 # Arg ACG 0 0 + TRNA 734 - 807 86.8 # Pro TGG 0 0 + TRNA 831 - 906 89.0 # Ala TGC 0 0 + TRNA 933 - 1009 82.2 # Met CAT 0 0 + TRNA 1035 - 1108 88.1 # Met CAT 0 0 + TRNA 1118 - 1207 61.8 # Ser TGA 0 0 + TRNA 1213 - 1288 83.3 # Asp GTC 0 0 + TRNA 1324 - 1416 74.1 # Ser TGA 0 0 + TRNA 1427 - 1500 75.9 # Met CAT 0 0 + TRNA 1509 - 1584 83.3 # Asp GTC 0 0 + TRNA 1606 - 1678 78.7 # Phe GAA 0 0 + TRNA 1685 - 1760 92.9 # Thr TGT 0 0 + TRNA 1768 - 1851 77.6 # Tyr GTA 0 0 + TRNA 1860 - 1933 65.9 # Trp CCA 0 0 + TRNA 1936 - 2008 67.2 # His GTG 0 0 + TRNA 2021 - 2092 68.3 # Gln TTG 0 0 + TRNA 2102 - 2175 79.6 # Cys GCA 0 0 + TRNA 2184 - 2257 32.0 # Gly TCC 0 0 + TRNA 2272 - 2346 25.6 # Pseudo TCC 0 0 Predicted protein(s) >gi|312979647|gb|ACRM01000018.1| GENE 1 2 - 112 88 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no IHLSGDNGKEGTPVPMPNTEVKLLSADGSWTDVPLE Prediction of potential genes in microbial genomes Time: Sun May 29 09:21:49 2011 Seq name: gi|312979646|gb|ACRM01000019.1| Staphylococcus hominis subsp. hominis C80 cont1.19, whole genome shotgun sequence Length of sequence - 84640 bp Number of predicted genes - 80, with homology - 78 Number of transcription units - 46, operones - 23 average op.length - 2.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + TRNA 82 - 156 33.5 # Gly TCC 0 0 + TRNA 198 - 281 58.7 # Leu CAA 0 0 + Prom 208 - 267 80.4 1 1 Op 1 . + CDS 409 - 1479 1123 ## COG3641 Predicted membrane protein, putative toxin regulator + Prom 1520 - 1579 11.5 2 1 Op 2 16/0.000 + CDS 1600 - 3054 1706 ## COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain 3 1 Op 3 1/0.889 + CDS 3047 - 3769 556 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 + Term 3907 - 3953 2.2 + Prom 3942 - 4001 14.0 4 2 Op 1 1/0.889 + CDS 4031 - 5152 1164 ## COG1600 Uncharacterized Fe-S protein 5 2 Op 2 . + CDS 5154 - 5624 553 ## COG0219 Predicted rRNA methylase (SpoU class) + Term 5713 - 5767 1.4 + Prom 5646 - 5705 9.8 6 3 Op 1 . + CDS 5784 - 6383 768 ## SH1108 hypothetical protein 7 3 Op 2 . + CDS 6412 - 6579 336 ## gi|228475920|ref|ZP_04060630.1| conserved hypothetical protein + Term 6589 - 6641 10.1 + Prom 6606 - 6665 10.4 8 4 Op 1 . + CDS 6690 - 7082 438 ## SERP1388 hypothetical protein + Term 7094 - 7140 6.4 + Prom 7136 - 7195 7.7 9 4 Op 2 . + CDS 7221 - 8606 1879 ## COG0114 Fumarase + Term 8627 - 8688 12.2 - Term 8615 - 8674 1.8 10 5 Tu 1 . - CDS 8685 - 9509 407 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit - Prom 9553 - 9612 10.0 + Prom 9503 - 9562 8.0 11 6 Op 1 7/0.000 + CDS 9647 - 10756 1130 ## COG2203 FOG: GAF domain 12 6 Op 2 1/0.889 + CDS 10771 - 11394 724 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain + Term 11430 - 11497 -0.5 + Prom 11414 - 11473 11.6 13 7 Tu 1 . + CDS 11644 - 12108 474 ## COG1476 Predicted transcriptional regulators + Term 12175 - 12223 6.1 + Prom 12159 - 12218 10.1 14 8 Op 1 4/0.167 + CDS 12329 - 13459 1109 ## COG4399 Uncharacterized protein conserved in bacteria 15 8 Op 2 2/0.389 + CDS 13531 - 13875 634 ## COG3679 Uncharacterized conserved protein + Term 13898 - 13940 7.2 + Prom 13924 - 13983 7.2 16 9 Op 1 5/0.111 + CDS 14026 - 15222 1277 ## COG0420 DNA repair exonuclease 17 9 Op 2 3/0.167 + CDS 15212 - 18148 2716 ## COG4717 Uncharacterized conserved protein 18 9 Op 3 . + CDS 18145 - 19086 1094 ## COG3481 Predicted HD-superfamily hydrolase + Term 19097 - 19145 10.2 - Term 19085 - 19133 9.5 19 10 Tu 1 . - CDS 19145 - 20104 1252 ## COG0760 Parvulin-like peptidyl-prolyl isomerase - Prom 20140 - 20199 9.3 - Term 20201 - 20260 6.0 20 11 Tu 1 . - CDS 20328 - 20885 295 ## SH1122 hypothetical protein - Prom 20989 - 21048 8.7 - Term 21010 - 21060 12.1 21 12 Op 1 . - CDS 21085 - 21468 637 ## COG4980 Gas vesicle protein - Prom 21508 - 21567 7.1 22 12 Op 2 . - CDS 21621 - 22046 567 ## COG0537 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases - Prom 22076 - 22135 8.5 + Prom 22094 - 22153 4.1 23 13 Op 1 7/0.000 + CDS 22181 - 22918 260 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 24 13 Op 2 . + CDS 22915 - 24138 1159 ## COG4473 Predicted ABC-type exoprotein transport system, permease component - Term 24133 - 24182 8.1 25 14 Tu 1 . - CDS 24193 - 24693 605 ## COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides + Prom 24736 - 24795 10.0 26 15 Op 1 9/0.000 + CDS 24944 - 25978 1457 ## COG0407 Uroporphyrinogen-III decarboxylase 27 15 Op 2 4/0.167 + CDS 26024 - 26947 1183 ## COG0276 Protoheme ferro-lyase (ferrochelatase) 28 15 Op 3 1/0.889 + CDS 26965 - 28359 1552 ## COG1232 Protoporphyrinogen oxidase + Term 28378 - 28425 0.1 + Prom 28374 - 28433 7.7 29 16 Tu 1 . + CDS 28463 - 29023 644 ## COG3545 Predicted esterase of the alpha/beta hydrolase fold + TRNA 29348 - 29421 75.9 # Met CAT 0 0 + TRNA 29436 - 29511 67.9 # Asp GTC 0 0 + TRNA 29533 - 29605 78.7 # Phe GAA 0 0 + TRNA 29617 - 29692 75.5 # His GTG 0 0 + TRNA 29706 - 29779 75.7 # Gly TCC 0 0 + TRNA 29792 - 29866 88.3 # Asn GTT 0 0 + TRNA 29868 - 29939 68.6 # Glu TTC 0 0 + TRNA 29990 - 30080 52.1 # Ser GGA 0 0 + Prom 30005 - 30064 80.4 30 17 Op 1 . + CDS 30313 - 30444 56 ## 31 17 Op 2 4/0.167 + CDS 30380 - 31774 1426 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 32 17 Op 3 . + CDS 31775 - 32782 1046 ## COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily - Term 32708 - 32745 3.1 33 18 Tu 1 . - CDS 32773 - 33018 230 ## COG0759 Uncharacterized conserved protein - Prom 33047 - 33106 4.9 + Prom 32804 - 32863 5.2 34 19 Op 1 1/0.889 + CDS 33086 - 33559 524 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes 35 19 Op 2 . + CDS 33540 - 34313 792 ## COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases + Term 34315 - 34345 -0.4 - Term 34293 - 34343 8.5 36 20 Tu 1 . - CDS 34360 - 35952 2024 ## COG1866 Phosphoenolpyruvate carboxykinase (ATP) - Prom 36001 - 36060 9.6 37 21 Op 1 . + CDS 36338 - 37534 1778 ## COG0192 S-adenosylmethionine synthetase + Prom 37544 - 37603 5.5 38 21 Op 2 . + CDS 37633 - 38544 1006 ## SH1140 hypothetical protein + Term 38545 - 38598 13.0 + Prom 38563 - 38622 11.9 39 22 Tu 1 . + CDS 38660 - 39493 1098 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase + Term 39513 - 39560 5.2 - Term 39500 - 39547 5.2 40 23 Op 1 11/0.000 - CDS 39554 - 39907 249 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 41 23 Op 2 . - CDS 39904 - 40269 267 ## COG0239 Integral membrane protein possibly involved in chromosome condensation 42 23 Op 3 . - CDS 40309 - 40668 188 ## SLGD_01154 hypothetical protein - Prom 40784 - 40843 9.4 43 24 Tu 1 . + CDS 40858 - 41571 1065 ## COG0176 Transaldolase + Term 41598 - 41644 10.3 + Prom 41683 - 41742 10.7 44 25 Tu 1 . + CDS 41770 - 42234 488 ## SH1146 hypothetical protein 45 26 Tu 1 . - CDS 42209 - 42655 362 ## SH1147 hypothetical protein - Prom 42711 - 42770 2.9 46 27 Tu 1 . + CDS 43336 - 43560 258 ## SH1149 hypothetical protein + Term 43592 - 43639 0.5 + Prom 43636 - 43695 13.0 47 28 Tu 1 . + CDS 43807 - 44655 922 ## COG4193 Beta- N-acetylglucosaminidase + Term 44662 - 44719 8.4 - Term 44656 - 44699 2.4 48 29 Tu 1 . - CDS 44709 - 44786 115 ## - Prom 44806 - 44865 3.8 + Prom 44657 - 44716 10.4 49 30 Tu 1 . + CDS 44953 - 46440 1781 ## COG4529 Uncharacterized protein conserved in bacteria 50 31 Op 1 16/0.000 + CDS 46850 - 47893 859 ## COG1985 Pyrimidine reductase, riboflavin biosynthesis 51 31 Op 2 15/0.000 + CDS 47900 - 48532 775 ## COG0307 Riboflavin synthase alpha chain 52 31 Op 3 18/0.000 + CDS 48544 - 49728 1395 ## COG0807 GTP cyclohydrolase II 53 31 Op 4 . + CDS 49741 - 50199 725 ## COG0054 Riboflavin synthase beta-chain + Term 50200 - 50268 17.3 - Term 50192 - 50248 10.7 54 32 Tu 1 . - CDS 50251 - 51252 1181 ## COG0506 Proline dehydrogenase - Prom 51285 - 51344 7.5 + Prom 51360 - 51419 6.1 55 33 Tu 1 . + CDS 51461 - 52288 907 ## COG2267 Lysophospholipase + Term 52317 - 52357 4.1 + Prom 52411 - 52470 8.9 56 34 Tu 1 . + CDS 52609 - 53010 280 ## COG1846 Transcriptional regulators + Term 53013 - 53079 10.8 - Term 53008 - 53060 10.3 57 35 Op 1 6/0.000 - CDS 53070 - 53630 581 ## COG0500 SAM-dependent methyltransferases 58 35 Op 2 . - CDS 53627 - 54586 1087 ## COG1242 Predicted Fe-S oxidoreductase - Prom 54739 - 54798 7.8 + Prom 54609 - 54668 5.9 59 36 Tu 1 . + CDS 54698 - 55882 1306 ## COG0477 Permeases of the major facilitator superfamily + Prom 56026 - 56085 7.1 60 37 Op 1 2/0.389 + CDS 56187 - 58601 3467 ## COG0495 Leucyl-tRNA synthetase 61 37 Op 2 . + CDS 58620 - 58931 533 ## COG0607 Rhodanese-related sulfurtransferase + Term 58967 - 59004 3.0 + Prom 59006 - 59065 10.6 62 38 Op 1 . + CDS 59177 - 64048 6291 ## SH1166 hypothetical protein + Prom 64055 - 64114 1.5 63 38 Op 2 . + CDS 64163 - 66475 2723 ## SH1165 hypothetical protein + Term 66517 - 66581 19.0 - Term 66505 - 66568 20.5 64 39 Tu 1 . - CDS 66572 - 67828 1368 ## COG2081 Predicted flavoproteins - Prom 68005 - 68064 7.4 + Prom 67893 - 67952 8.5 65 40 Op 1 2/0.389 + CDS 68105 - 69742 1968 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 66 40 Op 2 . + CDS 69739 - 70425 702 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 67 40 Op 3 . + CDS 70452 - 70883 693 ## SH1170 hypothetical protein + Term 70898 - 70935 6.6 + Prom 70885 - 70944 8.8 68 41 Op 1 2/0.389 + CDS 71025 - 72434 2035 ## COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases 69 41 Op 2 1/0.889 + CDS 72438 - 73289 1112 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase + Prom 73378 - 73437 8.9 70 42 Op 1 5/0.111 + CDS 73627 - 74418 772 ## COG0510 Predicted choline kinase involved in LPS biosynthesis 71 42 Op 2 . + CDS 74432 - 75073 752 ## COG0220 Predicted S-adenosylmethionine-dependent methyltransferase + Term 75092 - 75150 19.3 72 43 Tu 1 . - CDS 75442 - 75759 267 ## COG5584 Predicted small secreted protein - Prom 75816 - 75875 8.4 + Prom 75637 - 75696 7.0 73 44 Op 1 1/0.889 + CDS 75852 - 76934 1316 ## COG1363 Cellulase M and related proteins 74 44 Op 2 4/0.167 + CDS 76936 - 77247 467 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Prom 77280 - 77339 5.8 75 45 Op 1 4/0.167 + CDS 77365 - 78219 969 ## COG4848 Uncharacterized protein conserved in bacteria 76 45 Op 2 3/0.167 + CDS 78248 - 78844 745 ## COG0073 EMAP domain 77 45 Op 3 3/0.167 + CDS 78869 - 82426 3736 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins 78 45 Op 4 2/0.389 + CDS 82448 - 83761 1793 ## COG0773 UDP-N-acetylmuramate-alanine ligase + Term 83764 - 83801 -0.9 79 45 Op 5 . + CDS 83839 - 84336 743 ## COG4768 Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain + Term 84352 - 84398 8.1 80 46 Tu 1 . + CDS 84408 - 84639 317 ## SH1184 hypothetical protein Predicted protein(s) >gi|312979646|gb|ACRM01000019.1| GENE 1 409 - 1479 1123 356 aa, chain + ## HITS:1 COG:SA1676 KEGG:ns NR:ns ## COG: SA1676 COG3641 # Protein_GI_number: 15927433 # Func_class: R General function prediction only # Function: Predicted membrane protein, putative toxin regulator # Organism: Staphylococcus aureus N315 # 13 356 10 353 353 412 73.0 1e-115 MEAIMSKTRINLKYFFSNILNAVGAGVVIALLPNALLGELLKLFKDHHPILELVFQLVTI IQSFMAFIIGILAAHQFKFSGAGASMIGVSAMLGSGAIQMNANGIALKGIGDIINVILVI IIACALFLLLQGKFGSLEMIILPVFIPVVSGLVGLTTLPYIQIITKSLGHMINSFTEFNP LIMSILISVTFSLLMVTPISLVAIATAISLNGLGSGAANMGIVAACVTFFFGSLRVNSVG VNLVLFIGAAKMMIPVYLKHLIIAIPLTINGIISGLLTYFIGIKGTPLSAGFGYTGLVGP INAFNRMPGDSTFNIILLALGYFIVPFISAFIIHELCKKFIPSYNDNIYRFEITHQ >gi|312979646|gb|ACRM01000019.1| GENE 2 1600 - 3054 1706 484 aa, chain + ## HITS:1 COG:SA1675_1 KEGG:ns NR:ns ## COG: SA1675_1 COG0834 # Protein_GI_number: 15927432 # Func_class: E Amino acid transport and metabolism; T Signal transduction mechanisms # Function: ABC-type amino acid transport/signal transduction systems, periplasmic component/domain # Organism: Staphylococcus aureus N315 # 44 279 1 236 236 323 72.0 6e-88 MKYMFKTIIIAILISLTFINKEPMAHADQDAKWEKIKESGELRVGLSADYAPFEFEKTVK GKSEYVGIDIDLAKKIAKDNHLKLKIVNMQFDSLLGALKTGKIDVIISGMTSTPERKKEV DFSDSYTKTGNVMLIRKSDKNKFHTLKDFSNKKVAAQKGTEQEKIAQQEIENADISSLNR LPDAILAVKSNKVEGLVIEKPVAEAYVKQNNSLMIANVNFNEEKKDNVIAVPKNSPILLA NVNKSIKEVNDQHLISKYMDKASKDMQDDSSFFDKYGAFFIKGLKNTILISMIGVVLGAV LGALIALAKLSKFKLLSWIASIYIEFLRGTPMLVQVFLVFFGTTAVLGLDVSALVCGTIA LVINSSAYIAEIFRAGINAVDKGQTEAAQCLGLNYSKTMRYIILPQAIKNILPALGNEFV TLIKESSIVSTIGVGEIMFNAQVVQGISFDPFTPLIIAAIMYFILTFTLSRGMSLIEGRM KASD >gi|312979646|gb|ACRM01000019.1| GENE 3 3047 - 3769 556 240 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 239 1 242 245 218 46 6e-56 MIKVQNLNKSFNKNVVLKDINLEVNKGEVVAIIGPSGSGKSTLLRCMNLLETPSNGKVIF EGKELTHKNINLNELRQKMGMVFQNFNLFPHKTVLENVILAPKLLKNVDLKKLEIEGKAL LKKVGLEEKANAYPSQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVYEVLKVMK DLAKEGMTMVVVTHEMGFAKDVGDKVIFMADGYVVESETPDQLFNHPKHERTKNFLAKVL >gi|312979646|gb|ACRM01000019.1| GENE 4 4031 - 5152 1164 373 aa, chain + ## HITS:1 COG:SA1673 KEGG:ns NR:ns ## COG: SA1673 COG1600 # Protein_GI_number: 15927430 # Func_class: C Energy production and conversion # Function: Uncharacterized Fe-S protein # Organism: Staphylococcus aureus N315 # 4 373 5 374 375 682 86.0 0 MNHQLKQEIIDYAYSIGIDSIGFTTADPFDELKQKLVDYHEKGYASGFEESDIALRTEPK LSLSTARSIIAIAVGYPNKLKGAPKSVKGDRRGMFARASWGQDYHSIMKKRLDKLSEFIQ SKVPDVEIKSMVDTGVLSDRAVAERAGLGFVGRNGFVINPKLGTWTYLGEMLVSIPFEPD DPILDSCGECTICVDRCPTGALVGNGQLNSQKCISFLTQTKGYLKDEYRYKIGNRLYGCD TCQQVCPKNRGINTTHEDIILEPEILKPRLVPLLQMSNKEFKNTYGHLAGAWRGKKPIQR NAIIALAHFGEEAAIPELKEVALNDPRPMIRGTAYWAIGQILGNDARTFIYEHYDNEIEE VQVEMRKGLEMRK >gi|312979646|gb|ACRM01000019.1| GENE 5 5154 - 5624 553 156 aa, chain + ## HITS:1 COG:SA1672 KEGG:ns NR:ns ## COG: SA1672 COG0219 # Protein_GI_number: 15927429 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted rRNA methylase (SpoU class) # Organism: Staphylococcus aureus N315 # 1 155 1 155 156 280 87.0 9e-76 MTNHIVLFQPEIPANTGNIARTCAGTNTHLHLIKPLGFSTDDKMLKRAGLDYWEHVNITY HENIESFFEVTNGKYYLLTKFGKQTYSDFDFSNTEIENYFIFGRETTGLPDWVKEKYADT TLRIPMSDHIRSLNLSNTAALLIYEALRQQNFPGLK >gi|312979646|gb|ACRM01000019.1| GENE 6 5784 - 6383 768 199 aa, chain + ## HITS:1 COG:no KEGG:SH1108 NR:ns ## KEGG: SH1108 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 199 1 199 199 303 79.0 2e-81 MAMNFKVFEDKQHAADYAGDIIRKQFNNNPTTIAGFHLNKDSAPVLDELKKSVDRNAVDF SQINILDYDDNHSFYEALGVPSEQVYSISLDDDAESLINDRIKTKENKGKLTLQVVSIDN TGHLDVNIRQGLMKAREIILVVTGAKKSEVIKRLYEENGKSNFLPADLKVHRMVTVVLDR AAADGLPEDVKEYFTARFA >gi|312979646|gb|ACRM01000019.1| GENE 7 6412 - 6579 336 55 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475920|ref|ZP_04060630.1| ## NR: gi|228475920|ref|ZP_04060630.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 55 1 55 55 63 100.0 4e-09 MSKDSKRNYHEDENAMVQNMNDLEALGKEMEQISEENDEDKYNQTHDSEARSDLN >gi|312979646|gb|ACRM01000019.1| GENE 8 6690 - 7082 438 130 aa, chain + ## HITS:1 COG:no KEGG:SERP1388 NR:ns ## KEGG: SERP1388 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 130 1 130 134 146 66.0 2e-34 MLHKYWLPLTIITIIVSLISIKGFPIALGALYLPVLFKVIQLQLNLSKDLIDNATAHPFI KSNQKGIMISVICILIVTGILAYTLNDFYRSLGGGLGILVKISPVTLVISAILYIISAIS VVKAVKYKYE >gi|312979646|gb|ACRM01000019.1| GENE 9 7221 - 8606 1879 461 aa, chain + ## HITS:1 COG:SA1669 KEGG:ns NR:ns ## COG: SA1669 COG0114 # Protein_GI_number: 15927425 # Func_class: C Energy production and conversion # Function: Fumarase # Organism: Staphylococcus aureus N315 # 1 461 1 461 461 841 88.0 0 MSVRIEHDTFGEIEVPSDKYWGAQTERSKRNFPVGKEHMPIEVIYGFAQLKRGAALANHE LGKLSDTKKDAIIYACDLILKGELDGHFPLVVWQTGSGTQSNMNVNEVVSYVANEYLKEH NSEESIHPNDDVNKSQSSNDTFPTAMHVALYHEIETKLEPALKNLRDTFKEKENQYQSII KIGRTHLQDATPIRLGQEISGWRYMLDKCEQLLAESKQHILNLAIGGTAVGTGINAHPEF GDKVAKYISEHTGYAFVSSENKFHALTSHDEVVQLHGTLKALAADLMKIANDIRWLASGP RAGLAEISIPENEPGSSIMPGKVNPTQCEMLTMVAVQVIGNDTTVGIASSQGNFELNVFK PVILHNTLQSIYLLADGMETFNENCAIGIEPIEENINHYLNQSLMLVTALNPHIGYEKAA QIAKKAHKEGLTLKESAINSGYVTEEQFEKWIKPEDMVDPH >gi|312979646|gb|ACRM01000019.1| GENE 10 8685 - 9509 407 274 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 6 274 10 281 285 161 38 1e-38 MKFNVPETFNNYTLREIFQKLKLPKKDLHQLNMSKDITINQQSSKLTDKVVTNDVVYIPT PKEKSNYLPSYRYAQIAYEDNDLAIVVKPKGVKTHPNDLKESNTLMNHVIYTMDSDYVEP IHRLDQETVGLLIVAKNPLMKKILDRMLEENQITRIYRANVKALLPLKPQTIDMPIGKDK FHPNKRRISNTGQRAITHILTSKMIKEGICQLEIKLDTGRTHQIRVHLAEIGHPVIGDPL YGDATLRQLELNSYKIEFTHPLTQELISVSLDDE >gi|312979646|gb|ACRM01000019.1| GENE 11 9647 - 10756 1130 369 aa, chain + ## HITS:1 COG:SA1667_1 KEGG:ns NR:ns ## COG: SA1667_1 COG2203 # Protein_GI_number: 15927423 # Func_class: T Signal transduction mechanisms # Function: FOG: GAF domain # Organism: Staphylococcus aureus N315 # 1 171 1 171 171 233 67.0 4e-61 MEKPTRLALLKEIAEYLNEETELYNMMNKALDYLINGSNFTTGWIFFINKKGEQELVAST DLPHSLKNNNCKYLNNGTCWCVNAYHHKNLTKASNIINCSRINLANQESQKDDYLITHHA TVPLRSGDEQYGLLNVATPHTVVYSQDDLELLESVALQIGSAIKRIYLTDQEKEAARTSE RNRLARDLHDSVNQMLFSLKLTAHAAHDITEDRTAKKAFKLIEDTSQNAVNEMRALIWQL KPIGLEHGLVNAIEHYANMLDLKLNIEVRGLIKLSNLVEENVYRMIQEALNNTKKHAQTN HVSINIQQNEHQLYIKIYDDGKGFNVRDDLNQTTHGLKNIKQRIHSLDGEFNIQSDKLMG TTIYLNIPI >gi|312979646|gb|ACRM01000019.1| GENE 12 10771 - 11394 724 207 aa, chain + ## HITS:1 COG:SA1666 KEGG:ns NR:ns ## COG: SA1666 COG2197 # Protein_GI_number: 15927422 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 207 1 207 207 285 71.0 6e-77 MASIVLIDDHHIVRQGLEFLISTVEGLDIQASFSDGEAFIKYLNENNIPDLVLLDLVMPN MNGIEVTHYIKTYYPYIKVLVLTSYVDDEYVMSAINEGADGYEIKDVEPQKLIATITKVL NNEKIIHPKAKNVIDAMHEKPHFNNKLSKREMEVLKEMVKGKTNKDIAKSLFVSEKTVKT HVSHIFNKLQVSDRTQAAIYAIENKLI >gi|312979646|gb|ACRM01000019.1| GENE 13 11644 - 12108 474 154 aa, chain + ## HITS:1 COG:SA1665 KEGG:ns NR:ns ## COG: SA1665 COG1476 # Protein_GI_number: 15927421 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 154 1 154 154 290 91.0 1e-78 MDRQSFTDLIQTKFKMVRIEAGYTQDTMAQTIGLSKKTLVQIEKERVLPNWTTCVSICAL FRDSDVLNNTFGCDPLEIVQTISRNHCAYPNHSTTSDIYWNTMETRNGFILQSNKVSNIY RVLNPEKQPIFGTSKLREAETYFNRNAKEELMHV >gi|312979646|gb|ACRM01000019.1| GENE 14 12329 - 13459 1109 376 aa, chain + ## HITS:1 COG:SA1664 KEGG:ns NR:ns ## COG: SA1664 COG4399 # Protein_GI_number: 15927420 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 376 1 374 374 410 57.0 1e-114 MQAVLVVIFMIVIGAIIGGVTNVIAIRMLFHPYKAHYIFNMRIPFTPGLIPKRRDEIATK IGQVIEEHLITETLIHNKLNETKTKETINKLVKEQITKLKSDQATIRYFAEKFDIKIDYL VNEKLEDTISHKLLAFYNDHRNEEVIKLLPKETKRMIDKKVEPLGDLLCERARVYLSSDK GARDIYDMLDTFFNEKGKIVGLLQMFMTKESIADRIQHELIRLTNHPKAKRIVNQVIDNE YETLKRQPLKKIIDEAQFSKLSDSVTLLITSYLNLNEKIDKPLNQLSPRLMQYLETTLSD KVTQLIISQASKHLSTIMQKINLRKLVEDQINTFDLDYIEKLIIEIANKELKLITLLGFI LGGIIGLFQGLIAIFV >gi|312979646|gb|ACRM01000019.1| GENE 15 13531 - 13875 634 114 aa, chain + ## HITS:1 COG:SA1663 KEGG:ns NR:ns ## COG: SA1663 COG3679 # Protein_GI_number: 15927419 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 114 1 114 114 108 87.0 4e-24 MAVNLYDHANQLEQALRDSDEYKAIKDAFAKVKENEESKKLFDEFRETQMNFQQKQMQGQ EIPEEELAKAQEQAQAIEKDENISQLMQAEQKMSQVFQEINQIIVKPLDEIYVD >gi|312979646|gb|ACRM01000019.1| GENE 16 14026 - 15222 1277 398 aa, chain + ## HITS:1 COG:SA1662 KEGG:ns NR:ns ## COG: SA1662 COG0420 # Protein_GI_number: 15927418 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Staphylococcus aureus N315 # 1 397 1 397 398 583 72.0 1e-166 MVKFIHCADLHLDSPFKSKQQLSTSIFEDVQKSAYESFKKIVDVALKEDVDFMLIVGDLF DSENRTLRAEIFLKEQFKRLEKEQIFVYICHGNHDPLTTRITDNWPNNVSVFSNRVETYQ AITKAGEQIYIHGFSYQNNTSYENKIDEYPSSQGSNGIHIGMLHGTYSKSKIKQRYTEFM LEDLNHKLYHYWALGHIHQRQELSDMPPIHYSGNIQGRHFGEIGTKGCLLVEGDHLHLET TFIPTQFIRFEEATIKTDKISKQGIYEEIQKFKKQVREQGKAFYRLTINIDNDKILSTQD ILQIREMISEYEENEHDFIVIEDIILNYIQNEETPLINEFSKELINDDKVFEEAMTDLYL NPRASKYLEDYTTFNKAKLIHRAEKILKADMRGEEIDY >gi|312979646|gb|ACRM01000019.1| GENE 17 15212 - 18148 2716 978 aa, chain + ## HITS:1 COG:SA1661 KEGG:ns NR:ns ## COG: SA1661 COG4717 # Protein_GI_number: 15927417 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 978 1 978 978 984 58.0 0 MIIKSLEIYGYGQFVQRKIELNQTFTEIYGENEAGKSTIQSFIHSILFGFPTKKEKEPRL EPRLGNQYGGKLTLILDDKSEIKVERVKGSAQGDVKVYLENGLIRDEAWLKKKLNYISKK TYQGIFSFNVLGLQDIHRNLDEQQLQSYLLEAGALGSSEFTSMGQIVNQKKTTLYKKAGK NPILNQQIEELKQLEAQIRDEETKLDEYQCLIDEKDKSERHLSHLKENLKQLSKMHENKQ KQLGLHAHAQEWKSLEHHLNIEPLKFPEQGIERYETALKYKQSLDRDIGLRDEKIRQLEN EFNLIQMPEDRTVSDMYHLYQQESDIKQSELKAKALKKEIETFERSQQTLKDDIGWNEVY HEADTSETMKDYISEKIKNYNHQLNQKQQVERMIGEHNIEKKEIEKEIKSLESELVSETA LEKKKEYNQQKIELHEKESLYSKLKASFESEKERKQKQYRWLKISFIILALISVGLTIFA FITTSITFSIIFAILTVIFLVGLFFSKNKDIDYSETISEEISDLEQQLKALEDKYDLDFN LDDQYQLRERWNNANNTKTVLSNKLNHQHSILSDIQSSIDALAQDISEVKQDIKVSDKMS DERLVDSLKTMNQLKANDKQLNKLLLENIELNQNLINFYDYAQDVTKDSFDEFNKISLFN DLKRWISQYESKKEKKTQLRNQLTLLSKELKQLESRLDENKTTINELFKYIEVQNEEQYY QHYEAYQRYQQKLSRFNDLSTYLSNHEFSYEDSSVLSEKTTAQLEEEDQMLAQQVDDYND KYLEKQTEVSELSSRIHQMETDKTLSQLRHQYYNLKNRMNDIAKDWASLSYLETLINEHI KQIKDKRLPYVIDEAINIFKTLTDGKYNLITYENDSIKVKHRNGQMYHPLELSQSTKELL YISLRLSLIKVLKPYYPFPIIIDDAFVHFDKQRKSMMLNYLRELSQEHQVLYFTCTKDTT IPSREMLILNKKEEGGKR >gi|312979646|gb|ACRM01000019.1| GENE 18 18145 - 19086 1094 313 aa, chain + ## HITS:1 COG:SA1660 KEGG:ns NR:ns ## COG: SA1660 COG3481 # Protein_GI_number: 15927416 # Func_class: R General function prediction only # Function: Predicted HD-superfamily hydrolase # Organism: Staphylococcus aureus N315 # 1 313 1 313 313 528 79.0 1e-150 MRNVEKLNPGDSVENFFLIHRATQGVTAQGKDYMTLYLQDKSGDIEAKLWTVTKDDMKIL KPEIIVWVKGDVINYRGRKQMKVNQFRLATAEDGVKTQDFVDGAPLSPNEIQDELSHFIL EIENAHLQRITRHLLKKYQDKFFTYPAASSHHHNFAGGLSYHVLTMLKIAKSLCDIYPLL NRSLLYSAIILHDIGKVKELSGPVATTYTVEGNLLGHISIASDEVAEAAKELGIDSEEVM LLRHMILAHHGKMEFGSPKLPHLKEAEILFFIDNIDAKMNMFDKAFKKTEKGQFTERIFG MDNRQFYNPEKLD >gi|312979646|gb|ACRM01000019.1| GENE 19 19145 - 20104 1252 319 aa, chain - ## HITS:1 COG:SA1659 KEGG:ns NR:ns ## COG: SA1659 COG0760 # Protein_GI_number: 15927415 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Parvulin-like peptidyl-prolyl isomerase # Organism: Staphylococcus aureus N315 # 1 318 1 319 320 294 68.0 1e-79 MKIMNKLIVPVTAGVLLLGGCSSDSTDSKDNTLISSKAGNVTVKDVMDKIGKDQIASTSF SIELNKILADKYKDKVDTKRIDDDIKKEEKQYGGKDQFESMLKQQGMTLDDYKEQKRLSA YQKQLLNDKIKVSDKEIKDDTKKASHILIKVKSDSDKEGLSDKKAKAKAEKIQKEVEKNP NKFDELAKKESMDSASAKKGGSLGYVIKGQMVDKFDKALFKLKEGQISDIVKTEYGYHII KANKEDDFNKQKSQLKTKIIEQKVQKNPKLLTNAYKDLLKEYNVDYKDSDIKKSVEDTIL NPEKLKEQQSSGASSGLSS >gi|312979646|gb|ACRM01000019.1| GENE 20 20328 - 20885 295 185 aa, chain - ## HITS:1 COG:no KEGG:SH1122 NR:ns ## KEGG: SH1122 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 183 1 183 185 226 76.0 4e-58 MFLCKRHIDIHARFGVPRIAFLSIVTTIIAFLVSYEIMYYFVKTPLSDKYFLLLILFIIL MYPIHKTIHLFFFLPYIHAFRWHKLNKKKWLPYFNTYVNTPVRKFYFCINLILPFLIITS ILIFLTYHFPSYGHYFMFLLALNLGLSVMDFLYLKIILFSKEGQFVEEHQTGINLLTKVP FHSNI >gi|312979646|gb|ACRM01000019.1| GENE 21 21085 - 21468 637 127 aa, chain - ## HITS:1 COG:SA1657 KEGG:ns NR:ns ## COG: SA1657 COG4980 # Protein_GI_number: 15927413 # Func_class: R General function prediction only # Function: Gas vesicle protein # Organism: Staphylococcus aureus N315 # 1 121 1 121 121 124 54.0 6e-29 MKVTRVLFGIGVGLASGIAVSWMNRDQQRYNANASGQKVPTGARSELEREIETIKRSFYN IIDYSKQVKNDGVQQGSDIANEFKTIIGDFKSDINPNIEKLKSHIENLQNRGEEISNTFS EDKNNNK >gi|312979646|gb|ACRM01000019.1| GENE 22 21621 - 22046 567 141 aa, chain - ## HITS:1 COG:SA1656 KEGG:ns NR:ns ## COG: SA1656 COG0537 # Protein_GI_number: 15927412 # Func_class: F Nucleotide transport and metabolism; G Carbohydrate transport and metabolism; R General function prediction only # Function: Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases # Organism: Staphylococcus aureus N315 # 1 129 1 129 140 221 82.0 5e-58 MSETVFGKILTGEIPSYKVYENDYVYAFLDISQVTKGHTLLIPKKASPNIFETDEETMKH IGVAIPKVANAIKKAFQPDGLNIIQNNGEYADQSVFHLHFHFLPRYKDDIDGFGYQWETH ENEISDEQKKDIAEQIKAQFE >gi|312979646|gb|ACRM01000019.1| GENE 23 22181 - 22918 260 245 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 3 220 2 226 245 104 26 1e-21 MTVKVEHLTGGYGKRPVIENINFELKKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGTLS ISDTNINDDIEIYRRKLSYIPESPVIYEELTLEEHIAMTAMAYQISKEEAMKRARPLLKT FRLENELNVFPSHFSKGMKQKVMIICAFIVNPELYIIDEPFLGLDPLGIQSMLDLMVEKK NEGRTVLMSTHILATAERYCDRFIILDRGKVVAFGNLEELREQTGLKDQTLDDIYIHVTQ GGQAT >gi|312979646|gb|ACRM01000019.1| GENE 24 22915 - 24138 1159 407 aa, chain + ## HITS:1 COG:SA1654 KEGG:ns NR:ns ## COG: SA1654 COG4473 # Protein_GI_number: 15927410 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted ABC-type exoprotein transport system, permease component # Organism: Staphylococcus aureus N315 # 1 407 1 407 407 433 60.0 1e-121 MNNEAIALFKQRYDAIKKEKHYYNKFIFNGHFTVFLVILLGAFILGYGQWLQHIPKNIDY AFLASIVIALTSIFPFRTFLKDADKLFLLPFEKNMEDYIKLGLRYSYFNRIILQIVLLIV LFPLFYKLNQQLVVSYIVMSVLALIHPILGLRLKWQWYSARLSQWILNILIFSLNFITYY LVLGNQLYFAILLTIIFFGMVYLIPKFKSLTLFPWEQLISVEERHHTNYYKFVNMFTDVK HLKENAARRKYLDFLLPTPKGRRFNSHNMYLYLFVRSFVRGKDALSIILRLVIIALVLMI WLSHPLVSIIIGSLFMYIILLQMSQFYTQQAYGLWPQVWPVSDSEVIKGYEKFLYRLMIM IGIIFAIIFIIFYMKYFFFAIVFFIVGWLTIRSTIKKLQYQETLLRD >gi|312979646|gb|ACRM01000019.1| GENE 25 24193 - 24693 605 166 aa, chain - ## HITS:1 COG:BS_yhgC KEGG:ns NR:ns ## COG: BS_yhgC COG2329 # Protein_GI_number: 16078074 # Func_class: R General function prediction only # Function: Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides # Organism: Bacillus subtilis # 1 140 1 140 166 67 25.0 1e-11 MKIYTTYGTYDYLNQIRLNHSENHLFIYSTHDSSVIIEESEDKSILKHPTTYEVINEINE LNNQHFYSAIFIPSSDDHVNQLEKRLSNLNLDFSQFAGFKSYRFLRPEEGTTYKIYIGFA SRQTYEDFKSSDMFNDYFSKEALRHYFGSSSQHSSYFERYLYPIND >gi|312979646|gb|ACRM01000019.1| GENE 26 24944 - 25978 1457 344 aa, chain + ## HITS:1 COG:SA1652 KEGG:ns NR:ns ## COG: SA1652 COG0407 # Protein_GI_number: 15927408 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III decarboxylase # Organism: Staphylococcus aureus N315 # 1 344 2 345 345 622 85.0 1e-178 MHKKNNTILQTIKGELTSHTPVWFMRQAGRSQPEYRKLKEKYSLFDITHQPELCAYVTHL PVDNYNTDAAVLYKDIMTPLKPIGVDVEIQSGIGPVIHNPIKSVKDVEKLTQIDPKRDVP YVLETIKILTEEKLNVPLIGFTGAPFTLASYMIEGGPSKNYTFTKAMMYGDEETWFALMN HLVDVSIKYVTAQVEAGAELIQIFDSWVGALNVQDYRYYIKPFMDRLVCGIKEQHNIPVI LFGVGASHLINEWNDLPIDVLGLDWRTSILQADQLGVNKTLQGNLDPSLLLAPWDVLEQR VKAILDEGMQRGKHIFNLGHGVFPEVQPDTLKKVTQLVHDYTQK >gi|312979646|gb|ACRM01000019.1| GENE 27 26024 - 26947 1183 307 aa, chain + ## HITS:1 COG:SA1651 KEGG:ns NR:ns ## COG: SA1651 COG0276 # Protein_GI_number: 15927407 # Func_class: H Coenzyme transport and metabolism # Function: Protoheme ferro-lyase (ferrochelatase) # Organism: Staphylococcus aureus N315 # 1 307 1 307 307 526 83.0 1e-149 MTKTVGLLVMAYGTPYKESDIEPYYTDIRHGKRPTEEELQDLKNRYEFIGGLSPLAGTTN RQAEALTDALNKTYDDVEFKLYLGLKHISPYIEEAVEKMHNDGITEAVTVVLAPHYSSFS VGSYNKRAKEEADKYGIQLHHVERYYQQPKFIKYWTNKVNETLAKIPEEEHDETILIVSA HSLPKGLIERNNDPYPNEIKDTMDRLEASTNIKHVAQGWQSEGNTGTPWLGPDVQDLTRE LYKEHHYKNFIYTPVGFVCEHLEVLYDNDYECKVVCDDIGANYYRPEMPNTNPLFIGAIV DEIKTVF >gi|312979646|gb|ACRM01000019.1| GENE 28 26965 - 28359 1552 464 aa, chain + ## HITS:1 COG:SA1650 KEGG:ns NR:ns ## COG: SA1650 COG1232 # Protein_GI_number: 15927406 # Func_class: H Coenzyme transport and metabolism # Function: Protoporphyrinogen oxidase # Organism: Staphylococcus aureus N315 # 1 464 1 466 466 743 77.0 0 MSKKVAIIGAGITGLASAYYFKHYNEDIDVTIFEATSRPGGKIQTYRRDGYTIELGPESY LGRKTIMTDLAKDIGLEDDLITNQTGQSYIFAKNQLYPIPGGSIMGIPTDIKPFLKTRLI SPLGKLRAGLDLVIPPIKIENDISVGEFFRKRLGNEMLENLIEPLMGGIYGTDIDQLSLM STFPNFKHKEESYGSLIKGMKYEKRERTRKRQLYPGAPKGQFKQFRHGLSSFIEALAKNV EQKGVHIKYNTPVEDIHIHNDNYEIVTHNSRETFDGLLVTTPHQTFMKWFNHDSAFEYFN TMDSTTVATVVFAFDEKNIENTYNGTGFVIARTSHTDITACTWTTKKWPFTTPKGKVLLR AYVGKPGDTVVDDHTDEEIVNIARRDLSKMMTFKGDPDFTIVNRLPKSMPQYHIGHMTQI RNIQTHVKRQYNGLRITGAPFEAVGLPDCIQQGKNAVEELIDEL >gi|312979646|gb|ACRM01000019.1| GENE 29 28463 - 29023 644 186 aa, chain + ## HITS:1 COG:SA1649 KEGG:ns NR:ns ## COG: SA1649 COG3545 # Protein_GI_number: 15927405 # Func_class: R General function prediction only # Function: Predicted esterase of the alpha/beta hydrolase fold # Organism: Staphylococcus aureus N315 # 1 186 1 184 184 238 63.0 6e-63 MTDVIIVHSQIGNAHNHWYQWLKHNLALEGYNVQLFNLDKEDNKKLDTWIKAMKQQIKIN HPDTYVVTHGYGSIAALKFIEQVDLKRPIEGFFSIAGFKEDAQDIDESVNLDHITIDYDE IKKKVKHFHGLASKDDEHVSYKETEKLLQALGGSIRIVEEGGHFLEEEGFVSFSELQEKM QKYMTQ >gi|312979646|gb|ACRM01000019.1| GENE 30 30313 - 30444 56 43 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MNPVKSFKNRYNIVCITIGGMNSGILVKRAKYKKQKQNCGYRW >gi|312979646|gb|ACRM01000019.1| GENE 31 30380 - 31774 1426 464 aa, chain + ## HITS:1 COG:SA1615 KEGG:ns NR:ns ## COG: SA1615 COG0318 # Protein_GI_number: 15927371 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Staphylococcus aureus N315 # 1 459 1 489 492 627 62.0 1e-179 MEFWLKEQSIKNKNKIAVTDGKYTLTYNQLYSAAYQLSKKLLSLNESRIGLYIGNDIESI ILVHACWLAQIEIAMINTRLTTTEMTNQMNSVNVQLILTTKEFDLHSHQVLSFNQLSDYP DAPNHKQFDIHRIASIMFTSGTTGPQKAVPQTFKNHYASALGCKESLGFDQQTTWLSVLP IYHISGLSVILRATIEGFTVRLLNKYNTEDMLTIIKNEYPTHVSLVPQTLKWLMDAGLNK PYSIEKILLGGAKLSSTLIQQALSYQLPIYNSFGMTETCSQFLTASPDMLAKRYDTVGKP SDNVEVCIKQPNEEGHGELLIKGDNVMNGYLYPKDLDNTFEDGFFKTGDIAEIDSDGFVM VYDRRKDLIISGGENIYPYEIETVAKTFNGIIDAVCVPKEDDTWGQIPVLYYVASETIEV KDLIDFLQEHLAKYKVPKIYQRVNALPYTSTGKLQRNKVGTEDH >gi|312979646|gb|ACRM01000019.1| GENE 32 31775 - 32782 1046 335 aa, chain + ## HITS:1 COG:SA1614 KEGG:ns NR:ns ## COG: SA1614 COG4948 # Protein_GI_number: 15927370 # Func_class: M Cell wall/membrane/envelope biogenesis; R General function prediction only # Function: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily # Organism: Staphylococcus aureus N315 # 1 334 1 333 333 353 52.0 3e-97 MKIIDIQFYYYTAPFHSPITTPKIEMTHRKALIVRFISDEGENYFGECNAFETDWYDTET IETVKIRIQQWSKKILNQSFNTFSDWLPYLDLLDSYPATRCTVVMAVYQMFYSQPCFNVE YGATVSGLSSSQLQTLKDTKPARIKLKWSSHLINDIKKLRNELPFEFNLTLDANETLDMS QFQLLKEIDQHDILYVEEPFKDLNDLSYIDITHYPAIAIDEKATDLQSILKIIHQYPITA VVVKPFRLGGIDRALELIHLLKEKDIKVIVGGMYEYGLSRYFTALLAKEGSYPGDITPDG YYFETDFTQGIGKLKEGLIYFNPPKININALSVYE >gi|312979646|gb|ACRM01000019.1| GENE 33 32773 - 33018 230 81 aa, chain - ## HITS:1 COG:SA1613 KEGG:ns NR:ns ## COG: SA1613 COG0759 # Protein_GI_number: 15927369 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 81 1 80 85 119 75.0 1e-27 MLKKSFLSIIRFYQRFISPMTPPTCRFYPTCSEYTKEAIEVYGAFKGGYMGVKRILKCHP FHEGGFDPVPLKKDKHTHHHS >gi|312979646|gb|ACRM01000019.1| GENE 34 33086 - 33559 524 157 aa, chain + ## HITS:1 COG:SA1612 KEGG:ns NR:ns ## COG: SA1612 COG0494 # Protein_GI_number: 15927368 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 1 156 3 158 159 183 55.0 1e-46 MEFIDQEDRRVTMQYKTDDDIPNGNHVLAIPIFQNQLLFTKHSKRGIEFPGGKVEINETS QQAIARELYEETGGKIEALYYIAQYQVHTFDKSLFKKDVYVIKVKSIEHKHDYLETEGPI LFHLVNEIPEHQKSYLIKDEAILKCLERVKDLGYYEY >gi|312979646|gb|ACRM01000019.1| GENE 35 33540 - 34313 792 257 aa, chain + ## HITS:1 COG:SA1611 KEGG:ns NR:ns ## COG: SA1611 COG1506 # Protein_GI_number: 15927367 # Func_class: E Amino acid transport and metabolism # Function: Dipeptidyl aminopeptidases/acylaminoacyl-peptidases # Organism: Staphylococcus aureus N315 # 1 254 1 253 256 370 71.0 1e-102 MGITNIRTMPVESNTHRFEELTYTVDELRVKALQMVPMYHNVKRIVVYLRGGKGQVGRVR ASRLMQFSDPYTLVIGPYYRGSNGSEGKDEFCNADLHDVTVLIRLLKNKHPQAFVHMIGF SRGGIQGLLSFQDDPVDSYIIWGGVSDIHLMYEERVDLRGMLRRMVGHPKKDKEAYEQRN AIRTLNQNSPPILIVHGGKDWQVGIHQAYFLQEQLELKGVKHDTFYQLDEGHVPRPKALK EVLDYIHQWMNNIEQDL >gi|312979646|gb|ACRM01000019.1| GENE 36 34360 - 35952 2024 530 aa, chain - ## HITS:1 COG:SA1609 KEGG:ns NR:ns ## COG: SA1609 COG1866 # Protein_GI_number: 15927365 # Func_class: C Energy production and conversion # Function: Phosphoenolpyruvate carboxykinase (ATP) # Organism: Staphylococcus aureus N315 # 1 529 1 529 530 909 83.0 0 MSIDTYSETPKIKHLLEKETTLFQLSTTQLYYKILNNNEGQLTELGAINMSTGKYTGRSP KDKFIVNEPSYRDNIDWGDINQPIDEDVFLNLYNKVLDYLDQKEELYVFNGYAGSDKDSQ LKLKIINELAWHNLFAQNMFIRPESIEEASHIKPNFTIVSAPHFKANPDVDGTHSETFII VSFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGT GKTTLSATPNRKLIGDDEHGWNKNGIFNIEGGCYAKAIHLSKEKEPQIYNAIQYGTILEN TIVNERGHVDFDDNTNTENTRAAYPIHHIDNIVLPSKAAHPNTIIFLTADAFGVLPPISK LSKSQAMYHFLSGFTSKLAGTERGVTEPEPSFSTCFGAPFLPLHPTKYANLLGKLIDDHD VDVYLVNTGWTGGKYGVGRRISLHYTRYMVDQAISGKLKQATFTKDEIFGLSIPIEMEDV PKTILNPIHAWNDPEAYRHQANDLKQRFEENFKKFGDEVKDIAKNGGFSH >gi|312979646|gb|ACRM01000019.1| GENE 37 36338 - 37534 1778 398 aa, chain + ## HITS:1 COG:SA1608 KEGG:ns NR:ns ## COG: SA1608 COG0192 # Protein_GI_number: 15927364 # Func_class: H Coenzyme transport and metabolism # Function: S-adenosylmethionine synthetase # Organism: Staphylococcus aureus N315 # 1 397 1 397 398 708 91.0 0 MTYNKRLFTSESVTEGHPDKIADQVSDAILDEILKDDPNARVACETTVTTGMALISGEIS TSTYVDIPKVVRETIKNIGYTRAKYGYDYQTMAVLTAIDEQSPDIAQGVDKALEYRNDIS EEEIEATGAGDQGLMFGYATNETETYMPLPIFLSHQLAKRLSDVRKDGTLDYLRSDGKVQ VTVEYDENDKPKRIDTIVVSSQHAEDIELEQIQKDIKAHVIYPTVPEGLIDDETKFFINP TGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIV AAGLAEQCEVQLAYAIGVAEPVSIAIDTFKTGKVSEGQLVEAVRKHFDLRPAGIIKMLDL KHPIYKQTAAYGHFGRTDVLLPWEKLDKVNVLKDAVQK >gi|312979646|gb|ACRM01000019.1| GENE 38 37633 - 38544 1006 303 aa, chain + ## HITS:1 COG:no KEGG:SH1140 NR:ns ## KEGG: SH1140 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 303 1 302 302 477 83.0 1e-133 MNSFGPIEIGLIVAIIIAIICFILFLVALKSKNNMKHKASEEYSLKEQQLKSSHEEALEK ERIENKKQVTKQKEEFEATVNGKEREIDALKLFSKNKSEYVTDMRLIGIRDRLVKEKRIR REDMHIMANIFLPSNEFNNIQRISHLVLTRTGLYIIDSQLLKGHVYNGISGAQFQELPML KQVFDTLDLNTQAPQTLVLDQHEDNHSKLSFINYSDQLSAIENLATDLQTELGLKYKPTS ILYFNPKHDKDVTISNYSQSSSVKVLVGPEQLDEFFNKFVFHGRIQYNVDELQNIMDKIE SFN >gi|312979646|gb|ACRM01000019.1| GENE 39 38660 - 39493 1098 277 aa, chain + ## HITS:1 COG:SA1606 KEGG:ns NR:ns ## COG: SA1606 COG0656 # Protein_GI_number: 15927362 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Staphylococcus aureus N315 # 1 277 1 277 277 438 74.0 1e-123 MDYIEFYNGNHMPMLGLGTFRVENDDTCKEAVKHAIESGYRSIDTAKVYGNEEQVGQGIK EGLESTGLNREDIFVTSKLFFEDFGRENVAQAYETSIQKLGLDYLDLYLVHWPGTNEAVM IDTWKGMEDLYKDNRVKNIGVSNFNPDHFEALLAQVSIKPVINQVEFHPYFTQEKLRKYL EAQNIYMESWSPFMNAQILNDETLNEIGKEVNKTAAQVIIKWNMQHNVVVIPKSVTSSRI EENIDVFDFELSADQMKRIDDLNKDQRIGPDPDTFEG >gi|312979646|gb|ACRM01000019.1| GENE 40 39554 - 39907 249 117 aa, chain - ## HITS:1 COG:SA1602 KEGG:ns NR:ns ## COG: SA1602 COG0239 # Protein_GI_number: 15927358 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Staphylococcus aureus N315 # 1 117 1 117 117 115 60.0 3e-26 MIQALLIMIGGGFGAVVRAWLTDVTKSKWSTSIPIATLIVNWMGSFLIGLTTGLSIHLNW IHMFFITGFLGGLTTFSTMSYELAQCLTPSFKLFKFMMYSLLQFVIGFIACWIGFII >gi|312979646|gb|ACRM01000019.1| GENE 41 39904 - 40269 267 121 aa, chain - ## HITS:1 COG:SA1601 KEGG:ns NR:ns ## COG: SA1601 COG0239 # Protein_GI_number: 15927357 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Integral membrane protein possibly involved in chromosome condensation # Organism: Staphylococcus aureus N315 # 1 118 27 144 147 124 60.0 4e-29 MQYITVFIGGMLGALLRFLFSFMNQNSIFPIGTLIANLSGAFLMGYLSVVMIKLFKDHPK IKKGITTGFLGALTTFSTFQFELVTLLYSHHIILAVVYAFISYCFGVILCWIGMKLGGLT S >gi|312979646|gb|ACRM01000019.1| GENE 42 40309 - 40668 188 119 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01154 NR:ns ## KEGG: SLGD_01154 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 18 117 1 99 101 99 78.0 5e-20 MKLNVVILFNGINRRYVMSKSKKYLYISIILLIISFYFNTFNPLLSIQFKSIKNLLIACS IVNVVILIASIIFSDKAIKHLNYKNKDWIKTASNILPYVILVVILFHIFASVTTFGIFS >gi|312979646|gb|ACRM01000019.1| GENE 43 40858 - 41571 1065 237 aa, chain + ## HITS:1 COG:SA1599 KEGG:ns NR:ns ## COG: SA1599 COG0176 # Protein_GI_number: 15927355 # Func_class: G Carbohydrate transport and metabolism # Function: Transaldolase # Organism: Staphylococcus aureus N315 # 1 237 1 237 237 388 89.0 1e-108 MTQLNVEVFADGADIEQMKAAYKNKEVDGFTTNPSLMAKAGVTDYKAFAEEAVREIPDAS ISFEVFSDDLDTMEKEAEILKQYGDNVFVKIPIVNSKGESTIELIKKLSADHVRLNVTAV YTIEQVKAITEAVTESVPTYISVFAGRIADTGVDPLPLMKESVKVAHSKHGVKLLWASCR EVFNVIQANEIGADIITCPSDVVKKVNNNLGRDINELPVDTVQGFAKDIKSSGLSIL >gi|312979646|gb|ACRM01000019.1| GENE 44 41770 - 42234 488 154 aa, chain + ## HITS:1 COG:no KEGG:SH1146 NR:ns ## KEGG: SH1146 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 149 1 154 156 122 50.0 5e-27 MEETAFREKVRKQLWFLNKKEKQLLEHTFEQNNASFNNAEQKFMKPTRFANQFLQVHIFR NKHFSNGYLFLLIILFVLAYILLLGWFLAGFIASLAVVNQFINPKAELSLIYRVLILVFA IISLIVSLYLIRFVTALFTKRLLEYKFNEKKSSY >gi|312979646|gb|ACRM01000019.1| GENE 45 42209 - 42655 362 148 aa, chain - ## HITS:1 COG:no KEGG:SH1147 NR:ns ## KEGG: SH1147 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 148 1 148 148 178 64.0 7e-44 MLPHNTFDLLYIQTLEGSTIQTKCCFKTYEMILPFHIKKIVIYYLEQFNKSYTQQLKLAK RLLSINKLVPIYISKDIILFPIKHQRAPIQIYFNAQRIIGLTSSQNKTIIIFDNSVQCIV DEPYILVYKKWQESILLAYLINKTTSFH >gi|312979646|gb|ACRM01000019.1| GENE 46 43336 - 43560 258 74 aa, chain + ## HITS:1 COG:no KEGG:SH1149 NR:ns ## KEGG: SH1149 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 73 1 73 73 106 89.0 3e-22 MDYAHLNLEHFFARHDDLDVIRDRSEFVMINNFTNEMMYRDGDIEGTIDLNQYYYKNRSQ AVSFIMMDYKRNNE >gi|312979646|gb|ACRM01000019.1| GENE 47 43807 - 44655 922 282 aa, chain + ## HITS:1 COG:SA1593 KEGG:ns NR:ns ## COG: SA1593 COG4193 # Protein_GI_number: 15927349 # Func_class: G Carbohydrate transport and metabolism # Function: Beta- N-acetylglucosaminidase # Organism: Staphylococcus aureus N315 # 1 281 1 281 284 441 81.0 1e-123 MTKHRKGSIIGLIGLLIILVAAGFIFFSMISDQIFFKKVNEVEKVQHVNVTLDKAAAKQI DNYTSQQVSNKNNNAWRDASASEIKVAMDSSKFIDDDKQRYQFLDLSKYQGIDKNRIKRM LFDRPTLLKHTDAFVNAAKEKRVNEVYLISHALLETGSVKSELANGVNIDGKKYYNFYGV GALDEDPIKTGAEYAKKHGWDTPEKAIKGGADFIHKHFLSHDDQNTLYSMRWNPMNPGEH QYATDIKWAESNAEIIADFYKEMKTEGKYFKLYVYKDDQKHQ >gi|312979646|gb|ACRM01000019.1| GENE 48 44709 - 44786 115 25 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKFLLKTLIVFIIGFTWASRKNKAE >gi|312979646|gb|ACRM01000019.1| GENE 49 44953 - 46440 1781 495 aa, chain + ## HITS:1 COG:SA1590 KEGG:ns NR:ns ## COG: SA1590 COG4529 # Protein_GI_number: 15927346 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 486 1 486 500 667 67.0 0 MRVAIIGMGTAGVSVLRQLVKHKDFKQLKVDVYDNEFNMGQGVPFQNDSSQLLINLPTKN MSLNLDDDEEFWKWYQTQSDFTFKNPKYLPRFVFGHYMKSYLSNYETLYDNLTVIKQPVQ EVFINSNIDETTLKYYVCTSKDMKHCQVYDYIFLTIGTLSYHDPYHLKGIKGYIQTPYPT YNTLDDVQESDDIAIIGTGLASLDVVRYVAFHHPKLPITMTSRSAQLPSVRGNMKKIEFQ YLTKSKFNDIKDKYFGNVPLEKAFDLFKEECELNGIDLQKLVHRRTGDTIKDLNYDLEHP NEIGIFQTLIENVKENLNWIWNSFSRQDQIEFDKRFTKIIQLNSNPMPPRTAKLIKQLIK DGSLVIRKDLEDVVHKNGIFNLKFKHDEQWYPHHIIINATGSKTHLKDLDEDDQFILNLQ NRQIIQAHPMGGIQSIPETNQVISPRYGTLNNMIAIGQITNGVNKLRNGVKMIVNQAVSA VDYLYEIRKEFDHKA >gi|312979646|gb|ACRM01000019.1| GENE 50 46850 - 47893 859 347 aa, chain + ## HITS:1 COG:SA1589_2 KEGG:ns NR:ns ## COG: SA1589_2 COG1985 # Protein_GI_number: 15927345 # Func_class: H Coenzyme transport and metabolism # Function: Pyrimidine reductase, riboflavin biosynthesis # Organism: Staphylococcus aureus N315 # 142 347 1 206 206 283 66.0 4e-76 MSEFMKYAIQLAQMVEGQTGVNPPVGSVVVKDGRIVGLGAHLKQGEKHAEVQALDMAQDK AKGGTIYISLEPCTHYGSTPPCVNKIIEHGLSKVIYAVKDTTLSSEGDIILEKAGIEVEY QYSEEAFALYEDFFKAKQHKIPEITVKVSTSLDGKQATDSGQSQWITNKAVKQDVYRLRH THDAVLTGNGTIEADNPQYTTRIQEGKHPIRIILSKRGQIDYSKQIFHDQLSEIWIYTEN HELKSPSHHIKIIYLETCNLKSILSDIYQRGVGRLLVEAGPQITSEFLQSNYLDHLIIYY APKIIGGIGKNQFYQTDNVIDLADAPQFEVISTESIQQNIKMTLRKK >gi|312979646|gb|ACRM01000019.1| GENE 51 47900 - 48532 775 210 aa, chain + ## HITS:1 COG:SA1588 KEGG:ns NR:ns ## COG: SA1588 COG0307 # Protein_GI_number: 15927344 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase alpha chain # Organism: Staphylococcus aureus N315 # 1 210 1 210 210 287 72.0 9e-78 MFTGIVEEIGTVKSIRTQQSVRTLDISCQKIIEDMHIGDSISVNGACLTVIDFKQNQFSV QVIKGTENKTYLANIKENDEVNLERAMSGSGRFGGHFVLGHVDAKGTIINIRETPNSRIV SIKASDSVIKQMVKQGSITVDGVSLTIFDLHQHSFDIHLIPETRRSTILSNKKMGDEVHL ETDVLFKYVESIVGKNKSDLSVDKLKAYGF >gi|312979646|gb|ACRM01000019.1| GENE 52 48544 - 49728 1395 394 aa, chain + ## HITS:1 COG:SA1587_2 KEGG:ns NR:ns ## COG: SA1587_2 COG0807 # Protein_GI_number: 15927343 # Func_class: H Coenzyme transport and metabolism # Function: GTP cyclohydrolase II # Organism: Staphylococcus aureus N315 # 206 394 1 189 189 323 80.0 3e-88 MKFDSIEEALEALRNGDSIIVVDDENRENEGDLIAVTQWMKVDTINYMAKEARGLICAPI SSQIAERLNLKTMVDGNTDDYGTNFTVSIDHISTTTGISAFDRTATAKALINPDSKPESF HKPGHLFPLVSKEKGVLVRPGHTEAAVDLAKLTGAAPAGVICEIMNDDGTMAKGNELQQF KERHQLKMITIESLVNYRRKQESEGIELKATVKMPTDIGNFKMYGFQSQYTHEDIVVLGK GEPRTTENVRLHSACLTGDIFHSQRCDCGAQLEASMKYINDHGGLIIYLPQEGRGIGLMN KLKAYELIEQGHDTVTANLALGFDEDLRDYHIAAQILKYFNVQQVNLLSNNPKKFEGLED YGIKVAERTEIIVPETEHNHHYMETKKSKMGHLI >gi|312979646|gb|ACRM01000019.1| GENE 53 49741 - 50199 725 152 aa, chain + ## HITS:1 COG:SA1586 KEGG:ns NR:ns ## COG: SA1586 COG0054 # Protein_GI_number: 15927342 # Func_class: H Coenzyme transport and metabolism # Function: Riboflavin synthase beta-chain # Organism: Staphylococcus aureus N315 # 1 150 1 150 154 251 88.0 3e-67 MNFEGKLVGTNLKVAIVVSRFNDFITNRLLDGAKDTLVRHGVDEDNIDVAYVPGAFEIPL VAKKLAQKNDYDAVITLGCVIRGATSHYDYVCNEVAKGVSKANDVTNTPVIFGVLTTESI EQAVERAGTKAGNKGAEAAVSAIEMANLLKQF >gi|312979646|gb|ACRM01000019.1| GENE 54 50251 - 51252 1181 333 aa, chain - ## HITS:1 COG:SA1585 KEGG:ns NR:ns ## COG: SA1585 COG0506 # Protein_GI_number: 15927341 # Func_class: E Amino acid transport and metabolism # Function: Proline dehydrogenase # Organism: Staphylococcus aureus N315 # 1 333 1 333 333 447 67.0 1e-125 MSLFRDFFITLSNSTYLNEMAKKIGPTMGANRVVAGNTIEQLIDTIECLNAKHIDVTVDN LGEFVNNKAVATQAKNEILEIMEAINKYQVSAHMSVKVSSLGGEFDTELAYQNLREILLK ANTYDDMHINIDMEKYNSLSQTLQILDRLKGEFRNVGTVIQGYLFEAEKLIDKYPELRLR LVKGAYKENDTIAYQSKKDIDKNYINIIEKRLLNAKNFTSIATHDDKIINHVKQFVKDHH IEKNTFEFQMLYGFRNELAEEIARQGYHFTVYVPYGNDWFAYFMRRLAERPQNLSLAYQE FISTEALKKIGLVSGLALGTLTLVSGVVKLLQR >gi|312979646|gb|ACRM01000019.1| GENE 55 51461 - 52288 907 275 aa, chain + ## HITS:1 COG:SA1584 KEGG:ns NR:ns ## COG: SA1584 COG2267 # Protein_GI_number: 15927340 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Staphylococcus aureus N315 # 1 275 1 275 275 387 71.0 1e-107 MWKWETEHDAKGVIIIVHNMLEHTGRYAYVITMLRRNGYHVIMGDLPGQGQTSRANRGQL QRFEIYHEQLVEWIKIANEYKLPTFVMGVGLGGLIILNLLEKTELPIEGILLLSPMLELK KNYKTRKNMFISNIGKSSKDTQFKLGIDYEDLTRNSEVIDETNHDGLMLKKVSYKWFNII NETMRDTSQHIKDIKPLPTLLMYGTEDKILETSSIDILKQQFLADEFYFKAWKGFYHEIH NEPERDQVMRYILTFLNNSVNTMGFIVQEEDIEEI >gi|312979646|gb|ACRM01000019.1| GENE 56 52609 - 53010 280 133 aa, chain + ## HITS:1 COG:SA1583 KEGG:ns NR:ns ## COG: SA1583 COG1846 # Protein_GI_number: 15927339 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 133 21 153 153 140 57.0 8e-34 MKLQKKETVSMVLKLEKLLKDIDSIFRIIYEKYHLNKEEVLILLTLWEKGPMTLKEMDQY VNIKSYKRTRTYNNLVQSDWVYKERPIDDERTVIIHFNEEKNKYRNELLDFITTIIKRKY ESLENSLNSLMSV >gi|312979646|gb|ACRM01000019.1| GENE 57 53070 - 53630 581 186 aa, chain - ## HITS:1 COG:SA1582 KEGG:ns NR:ns ## COG: SA1582 COG0500 # Protein_GI_number: 15927338 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Staphylococcus aureus N315 # 1 185 1 185 187 259 71.0 3e-69 MKLERILPFAKTLIKQHIQDDSIVIDATCGNGNDTLFLAEQVPNGKVFGFDIQKEAIEHT KEKIVSFKHVTLIHDGHENILNDIPSDVIGNVDAAIFNLGYLPKGDKTIVTKPETTIQAI ESIFKLLSTEGIIVLVIYHGHKEGQIERDELLKYLENFDQSKAHILKYQFINQVNHAPFI CAIEKR >gi|312979646|gb|ACRM01000019.1| GENE 58 53627 - 54586 1087 319 aa, chain - ## HITS:1 COG:SA1581 KEGG:ns NR:ns ## COG: SA1581 COG1242 # Protein_GI_number: 15927337 # Func_class: R General function prediction only # Function: Predicted Fe-S oxidoreductase # Organism: Staphylococcus aureus N315 # 1 316 1 316 317 599 87.0 1e-171 MGKYFPYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGS GDFAGNRADPIEVQFQQIKERMHEKWSEGKYIAYFQAFTNTHAPVEVLKEKYEPVLKEEG VIGLSIATRPDCLPDDVVEYLAELNQRTYLWVELGLQTVHQKTSDLINRAHDMQTYYEGV AKLRKHNINVCTHIINGLPGENYHMMMETAREVAQMDVQGIKIHLLHLLKGTPMVKQYEK GMLEFMTQEDYTNLVCDQLEILPPDMIIHRITGDGPIDLMVGPMWSVNKWEVLNEIDDEL ARRESYQGKFYTSNNKVNS >gi|312979646|gb|ACRM01000019.1| GENE 59 54698 - 55882 1306 394 aa, chain + ## HITS:1 COG:SA1580 KEGG:ns NR:ns ## COG: SA1580 COG0477 # Protein_GI_number: 15927336 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 383 1 383 393 575 81.0 1e-164 MNIPRSVWWLVIGMALNITGSSFLWPLNTIYMKEELGKSLTVSGIVLMINSFGMVVGNLL GGTLFDKLGGYRTIMIGTITCLLSTTLLNFFHGWPWYAVWLVLLGFGGGMIVPAIYAIAG AVWPNGGRTTFNAIYLAQNIGVAAGAAMGGFVAEFSFNFIFLANLIMYVLFGIVAFTQFN LEYHAKVKSPDSLDIQSKENKKRFIALILLCAMFSICWIGYIQWETTIASFTQQINISMS QYSVLWTVNGIMILVAQPLIRPVIRLLKGNLKYQMFVGILIFMLSFFVTSFAEQFTVFLI GMIILTFGEMFVWPAVPTIANYLAPQGKQGQYQGVVNSASTVGKAFGPLIGGILVDTFNM SAMFIGMIILLLIGMFFLSIFDKGLPKQSQHENR >gi|312979646|gb|ACRM01000019.1| GENE 60 56187 - 58601 3467 804 aa, chain + ## HITS:1 COG:SA1579 KEGG:ns NR:ns ## COG: SA1579 COG0495 # Protein_GI_number: 15927335 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Leucyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 804 1 804 804 1433 88.0 0 MGYNHKEIEKKWQNYWAENKTFKANDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDI ISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKKNVQTFKRQIQELGFSYDW DREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVVDGVSERGGH PVYRRPMKQWVLKITEYADRLLEDLDGLDWPESIKDMQRNWIGRSEGARVSFNVENTNDT IDVFTTRPDTIYGTTFLVLSPEHALVNEITTDDKKEMVKQYQEEASKKSDLERTDLAKDK SGVFTGAYAINPLSGEKLPIWIADYVLSTYGTGAVMAVPGHDERDHEFAKKFDLPIIEVI EGGNVQEEAYTGEGAHINSGELDGLDNKEAISQAITLLEAKGAGEKKVNYKLRDWLFSRQ RYWGEPIPVIHWEDGTMTTVPEEELPLLLPETDQIKPSGTGESPLANIDDFVNVVDEKTG MKGRRETNTMPQWAGSCWYYLRYIDPHNENMLADPEKLKHWLPVDLYIGGVEHAVLHLLY SRFWHKVLYDLGVVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVVNPDDIVASHGADTLR LYEMFMGPLDAAIAWSENGLDGSRRFLDRVWRLFINEDGSLSNKIVENNDNSLDKVYNQT VKKVTEDFDTLNFNTAISQLMVFINDCYKANNIYKPYVEGFVKMLAPIAPHVSEELWQRL GNQETITYQPWPTYNASLLVDDEIEIVVQVNGKVRAKINIPKDLSKEDMQDLALQNENVK LSIEGKEIKKVIAVPQKLVNIVAK >gi|312979646|gb|ACRM01000019.1| GENE 61 58620 - 58931 533 103 aa, chain + ## HITS:1 COG:SA1578 KEGG:ns NR:ns ## COG: SA1578 COG0607 # Protein_GI_number: 15927334 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 103 1 103 103 145 73.0 2e-35 MESITVDQLKEKILGSNPVNIIDVRTDEETAMGTIPGAKTIPMDQIADNLNQFNKNETYY IVCAAGVRSEKVANYLENEGIHAVNVEGGMQAWGDEGIEIDSI >gi|312979646|gb|ACRM01000019.1| GENE 62 59177 - 64048 6291 1623 aa, chain + ## HITS:1 COG:no KEGG:SH1166 NR:ns ## KEGG: SH1166 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 1623 1 1639 2609 1014 50.0 0 MNLFKKQTFSIRKFSVGTFSTLIATLVFLSHPGHAATHDAETNTSAPQTNESATINKQNT NIEQPHSETTSTNISNSNENNRNNESNTSSEHSINREREEGTVNNVINSTENNTNHNEKV TTNDVVSNENNHETTNVNQPHRRGKRSVDNTPSTTNTDPMAVNEQNTGQIINGTFTDNSQ GATIPTKNLESAMNEANTVPGWHVNSNDQTIIPLIWGPKSLPAYNPYIFDKTNNKIGVVL SKYNGNFNQVPGIADPTVGSIYQDVDVTPGSEIQLHYISSSMNNIWGVNGARVYIYDANN PSTLLYKGTPDILQNPIGNFVGVFQVPETVSRLRLRFESALNRSTDSTNGHRLLTGPNNF GGGVLADVTINSGAYLTATVNNTHYFAQSGSINADRVYQEIGFRIENRGHSSSNKTEYTI VLPEDVTYVSTKNATGKFNAATKELTVKIDRLEAGASKNISIGLSLPTDRPIEKEFLGHL TYVTDGINMNRLSDSKDFGRNNGDHYTRYGVHNEFVSVDSAMRQGDIVLDKQTITVKMYK QHLRDKVTEIEDDLANLDQNDNSPEVWEAMQVVLRKAKEVLAETDEMPISELKDQATINS IDLNLDKAHAKLSLDKVARTKRALFMGNDTATIEEKNAVIQQVNQALQSSYTTVDQSMTS NDVSTNKDTGINEITMIDLTPTVKQAAIDELTERANAKKVEFDNNPDATVEEKEAAKATI DNLVSEATTNIMNETTNNGVAQQKTSSIDSVNAATITPTVRSNARTAIDNIASARKVEID KDNNATLEEKNAAKTEIDNLVARAKADINSLNHNNEIEILKENKVNEISQVEAHPVKKNA AAQAIDQAAIAKKQEIDLIEDATIEEKEVAKAKVDKIVTEAKNNINQATTNSSVDDAQNE GITAINAVIPEVVKKSEARDTIDEVARIKKAAIDQTPDATVEEKEAAIAKIDQEVTKAKA QIHQALKNENVDTAKTNGTNFINAIQPEITKKMKARETIDEVARAKKEAIDRTLDATTEE KEAAKAKVDQAVTEAKGHINEAINNSGVDEAKTNGTTTINAIQPEVIKKSEARQAIDDIA RAKKEAIDQTPDATTEEKEAAKAKVDQAVTEAKGHINEAINNSGVDETKTNGTTTINAIQ PEIIKKSEARQAIDDVARAKKEAIDQTPDATTEEKEAAKAHINEAITNSDVDEAKTNGTT TINAIQPDVLKKSEARQAIDNEVINKKTEIDNNVDATIEEKEAAKSKVDEAAVEAKNNIN HTEINQAVDKAKEDGVTTVSHIQPNIVKKIAAKTAIDEVARIKKEAIDQTPGATTEEKEA AKSKVDEAATEARNNINRALSNNDVDQVVHNSTASINNIQPDIVKKEQAKRGIDTQAKIK KAIIDQISDATTEEKEAAKSKVDEEVTKAKHSIDQAVTNSDVDQAKDRGNVAINNIQPEV VKKETAKTSIDQIALTRKNIIDQTPDATTEEKEAAKSKVDEEVTKAKRNINQAVTNNDVN QVEHNSTIAINNIQPNIIKKIAAKTLIDQVARAKKNNIDQTSNATIEEKEAAKQKVDEEV TKAKHSIDQAITNSDVDQAKDRGNVAINNIQPEVVKKETAKNAIDQIALTRKAIIDQTPD ATE >gi|312979646|gb|ACRM01000019.1| GENE 63 64163 - 66475 2723 770 aa, chain + ## HITS:1 COG:no KEGG:SH1165 NR:ns ## KEGG: SH1165 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 2 691 1305 1993 2156 395 51.0 1e-108 MINNIQPTVVKKSEARQAIDDLAKLKKATIDLTQEATEEEKEAAKSKVDQALTEAKTHIN EAENDEGVDEAKTKGINVINTIQLEIIKKVEAKHEIDQSAIAKKKIIDQTPDATEEEKEV AKQKVDEEATKAKDNIDQASTNDAVDQAKTTGNTEINNIQPEVVKKSLARQAIDEVAKVK KEKINQMLDATEEEKEAAKQKVDEEVIKAKNNINQATTNDGVNNAKTTGKNTIENIQPEV VKKAEARKAIDEAATLRKNLIDQDNSTTKEEKDIAKQKIDDEVNKAKRNVDQSINNSNVD HAQINGISAINNINAVALKKTQAKKSIDDEVTAKKAEIDSNHEATNEEKEMTKRKVDEAA TKAKHNVDQSTTNDTVDQSTQIGISIISNIQPETIQKSLARQAIDDEATIKKAEIENNHN ATKEEKDVARQKVDEEVIKAKNNIAQSTTNSDVEIAKESGKHAIDEIQPEIVKKSVAKQT IDELAKQKKAEIDQTPNATKEEKDAAKQKVEEAVMRAKKLLEGANTNSDVDQTTEQGKQS INSIQVEVIKKADALSKLEVELQKLKDKVLSDQTFTIDEKLFIKQKLDESYKKAEEKVNQ AQTNKQVDNIKIHYLQEFNKIVLIDKVKLKAKSQIFDVANKRKAYIKGLTNISEYNRNKA YKQIDVYVMKALNKLAENVTTNDINELTRVTINEIEHVNVKQFENNFGLVNDNKVTFNNF NNKFNVNNNHSKLNTLPYTGENENSLLSLAEFTLLSGLLLLLKRRKKEDK >gi|312979646|gb|ACRM01000019.1| GENE 64 66572 - 67828 1368 418 aa, chain - ## HITS:1 COG:SA1576 KEGG:ns NR:ns ## COG: SA1576 COG2081 # Protein_GI_number: 15927332 # Func_class: R General function prediction only # Function: Predicted flavoproteins # Organism: Staphylococcus aureus N315 # 1 418 1 419 422 625 78.0 1e-179 MYQTIIIGGGPSGLMAAVAASENSSKVLLIEKKKGLGRKLKISGGGRCNVTNRLPYEEII KNIPGNGKFLYSPFSKFDNESIIEFFESRGIKLKEEDHGRMFPVSNKSQDIVDTLVNTIK NNNVEIKEETVVNDISKNDQSFIVKTQDGEFESKTVIIATGGTSVPQTGSTGDGYRFAKN LGHTITELFPTEVPITSSESFIKNKTLKGLSLKNVELSVLKKNGKKRISHQMDMIFTHFG VSGPAALRCSQFVYKEQKNQKKQDIQLQLDVFPEISLQDLENKIKKILSEEPDKYIKNAL RGLIEERYLLFMLEQADINENTTFHHLSNPQLTHLAEHFKQFIFTVNGTLSIERAFVTGG GVSLKEIWPKTMMSKIQPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGSEARQFIYT >gi|312979646|gb|ACRM01000019.1| GENE 65 68105 - 69742 1968 545 aa, chain + ## HITS:1 COG:SA1575 KEGG:ns NR:ns ## COG: SA1575 COG2244 # Protein_GI_number: 15927331 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 1 545 1 553 553 701 71.0 0 MSENKEMVRGTFLITFSILITKILGVLFVIPFYAIMGANAEEKLAPFNYAYVPYNIAIAV ATAGVPLAASKFVAKYNAIGAYRVGQKLYKSSFIVMSISGIIGFLILFYLAPDIAVITLG QKEGKGGWTVPEITWIIRIISIVVVFIPLLATWRGVFQGYQSMGPTAVSEVTEQLARIIF ILIGSYLVLNVFHGTYLQANGVATFAAAVGAIAGLFTLWYYWKKRKPHIQKMVESDRTGL DISYGRMYKEIIAYSIPFVIVSLNFPLFNLVDQFTHNNALDAAGFHANKDYFFTILNFTT NKIVMIPTSLAAGFAVSLIPYITKTYAEGRLTEMHRQIKTSIGVLMYITVPASLGIMALA APLYTVFYQYNPDGNKMLFIYAPVAILISLLSVTASMLQGIDKQKLTVFVILGAVVLKLA LNIPLIMTFHTAGAILSTAIALSFAITANFFILKIYAKYEFTETFVQVAKIFIYSLIMMI SVEIVYLILGHFVPVERKFGAMIILLVGVIVGALVYGSITIKNRLADQFLGELPEKIRRK VGFLR >gi|312979646|gb|ACRM01000019.1| GENE 66 69739 - 70425 702 228 aa, chain + ## HITS:1 COG:SA1574 KEGG:ns NR:ns ## COG: SA1574 COG1187 # Protein_GI_number: 15927330 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Staphylococcus aureus N315 # 1 228 1 228 231 292 69.0 3e-79 MRLDKFLSNMGVGTRTEVKQLLKKNSVKVNDKVEKSPKSQVDPEQDEITVDGKIIEYINH VYIMLNKPKGYVSATYDDINQTVIDLIADYCHLDLFPVGRLDKDTEGLLLITNDGQFNHN LMSPSKHVSKTYKVTSKYPIKNEDIIAFKNGIELSDGKVKPAQLEKLDHNVSLVTIYEGK YHQVKRMFHSIDNEVLELKRLKIANLTLDENLKSGEYRLLTSEELKLL >gi|312979646|gb|ACRM01000019.1| GENE 67 70452 - 70883 693 143 aa, chain + ## HITS:1 COG:no KEGG:SH1170 NR:ns ## KEGG: SH1170 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 142 1 140 141 137 72.0 1e-31 MAKRAGLLRIVAGIGAAAAAVALSRESSRNKLKAEYNKYKENPEGYKQNAKGLVNDISSK ANETIQNVKNDPQGYANRLKNDPKSLLQDEKSKFTNVNTKKNDTHELAEGKFDDEGGATV NNNLRVVTEEDLKNNHNALDDRH >gi|312979646|gb|ACRM01000019.1| GENE 68 71025 - 72434 2035 469 aa, chain + ## HITS:1 COG:SA1572 KEGG:ns NR:ns ## COG: SA1572 COG0624 # Protein_GI_number: 15927328 # Func_class: E Amino acid transport and metabolism # Function: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases # Organism: Staphylococcus aureus N315 # 1 468 1 468 469 786 79.0 0 MWKEKVQEYESQIIEDLNGLLSIKSVRDDNQASEEAPVGPGPREALDYMYKIAQRDGFST HDVDHIAGRIEAGQGEDVLGILCHVDVVPAGDGWDSDPFKPVVTDDAIVARGTLDDKGPT IAAYYAVKILNEMNVDWKKRIHIIIGTDEESDWKCTERYFETEEMPALGFAPDAEFPAIH GEKGITTFDLVQNVSSPHTDHSEATLLSFESGQRYNMVPDHAKAHILVEKNMTDVVQHFE YYLDQQQLEGEAVVDNGELVLTVEGKAVHGMDPSLGMNAGLYLIDFLSTLNLNQTAKEFA EFSNRYLHESHFGEKMGMKFHTDVMGDVTTNVGIITYDKEKGGKFGINLRYPKGFEFETA LERFKNEIKSQGFEIELGKVQQPHFVDKNDPFVQKLVTAYRNQTGDMTEPYTIGGGTYAR NLDKGVAFGAMFEDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEG >gi|312979646|gb|ACRM01000019.1| GENE 69 72438 - 73289 1112 283 aa, chain + ## HITS:1 COG:SA1571 KEGG:ns NR:ns ## COG: SA1571 COG0115 # Protein_GI_number: 15927327 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Staphylococcus aureus N315 # 1 282 1 282 282 450 80.0 1e-126 MTKVFINGEFLNQEDAKVSYEDRGYVFGDGIYEYIRAYNGKLFTVTEHFERFLRSASEIQ IDLGYTVEELTDIVRQLLKINDIQNGGIYIQATRGVAPRNHSFPTPEVKPVIMAFAKSYD RPYDDFENGINTVTVEDIRWLRCDIKSLNLLGNVLAKEYAVKYNATEAIQHREETVTEGA SSNVYAIKDGEIYTHPVNNYILNGITRKVIKWVAEDYNIPFNEETFTVDFLKNADEVIVS STSAEVTPVVKIDGEIVNDGKVGPITKKLQEGFEKYIESKSIN >gi|312979646|gb|ACRM01000019.1| GENE 70 73627 - 74418 772 263 aa, chain + ## HITS:1 COG:SA1570 KEGG:ns NR:ns ## COG: SA1570 COG0510 # Protein_GI_number: 15927326 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted choline kinase involved in LPS biosynthesis # Organism: Staphylococcus aureus N315 # 1 263 1 263 263 477 90.0 1e-135 MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIE TGEVVTAQHWKNGRELTSSEMSQRRVAELLKKIHGSKPLLNMLKRMEMEPITPNIMLKKI NASLSRDVLTHHIIRKALTYLEDHIPNLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEG AMIADPAIDIGMLLYNYVPKQQWSNWFNTYGVKESMDLNKRMKWYTVIQSIGMIQWYEEQ KRFKDMNTWLKFLNEVMNSNLFI >gi|312979646|gb|ACRM01000019.1| GENE 71 74432 - 75073 752 213 aa, chain + ## HITS:1 COG:SA1569 KEGG:ns NR:ns ## COG: SA1569 COG0220 # Protein_GI_number: 15927325 # Func_class: R General function prediction only # Function: Predicted S-adenosylmethionine-dependent methyltransferase # Organism: Staphylococcus aureus N315 # 1 211 1 211 214 358 83.0 3e-99 MRVRYKPWAEDYLKEHPDLVDMDGSHAGKMSDWFDKKQPIYIEIGSGMGQFITTLAEQHP EINFVSLEREKSVMYKVLDKVKDKGLTNLKMICNDAIELNEYFKENEVSRIYLNFSDPWP KKRHAKRRLTYRTFLALYEQILKEDGEIHFKTDNRGLFAYSLESMSQYGMYFTKLNLNLH DEDDEDNILTEYEKKFSDKGSRIYRMEAKFHKN >gi|312979646|gb|ACRM01000019.1| GENE 72 75442 - 75759 267 105 aa, chain - ## HITS:1 COG:SA1567 KEGG:ns NR:ns ## COG: SA1567 COG5584 # Protein_GI_number: 15927323 # Func_class: S Function unknown # Function: Predicted small secreted protein # Organism: Staphylococcus aureus N315 # 31 104 29 102 103 80 58.0 9e-16 MTRQTIKYISIPIVITIGASTAFILYHTLKNKKVKNPDRILEEVKSYFMDIKGSYILHEP LQNKEKYLNRLVYQGGITQNKNNHDIEYTFYADAHTGEILTIEEN >gi|312979646|gb|ACRM01000019.1| GENE 73 75852 - 76934 1316 360 aa, chain + ## HITS:1 COG:SA1566 KEGG:ns NR:ns ## COG: SA1566 COG1363 # Protein_GI_number: 15927322 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Staphylococcus aureus N315 # 6 356 8 358 358 590 79.0 1e-168 MENDKTLLRIKTLTELHGAPGFEEEVRDYMKKEMTPFVDEVITTHMGSVFGIKKSKKQNA KRVMVAAHMDEIGFMITNITQNGMLQFTNLGGVSNDIWQGQRLQVKNRNGEKIVGVVSNI PKHFRTGNEAVPEIKDLMLDIGAESDKEVRSRGIEIGDTIVPFTPFTQLSEHRYSAKAWD NRYGCVLAIEILELLKDVELDVDLYVGANVQEEVGLRGAKASTELIQPDIAFVVDCSPAN DIKGKQQLSGQLGEGTLIRIKDGTMILSPRFRDYLLELVDTFDIRSQYYISPGGTDGGEI HKANKGVPTAVIGVCARYIHSTDAVFDIRDYYAARELLKQAVSHLTNENILTLQFQSEEK >gi|312979646|gb|ACRM01000019.1| GENE 74 76936 - 77247 467 103 aa, chain + ## HITS:1 COG:SA1565 KEGG:ns NR:ns ## COG: SA1565 COG0526 # Protein_GI_number: 15927321 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 103 1 103 103 166 78.0 1e-41 MITLETEKQFEELKNEQTVFEFTAGWCPDCKVIEPDLPKLEKKYSNFKFVSVDRDKFIDL AIENDIMGIPSFLVYKNGELMGSYIGKERKSIEQIDSFLSQYV >gi|312979646|gb|ACRM01000019.1| GENE 75 77365 - 78219 969 284 aa, chain + ## HITS:1 COG:SA1564 KEGG:ns NR:ns ## COG: SA1564 COG4848 # Protein_GI_number: 15927320 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 283 1 283 285 447 83.0 1e-126 MNVFQMRDTLKQRLKHLDVDFKFDREEETLRIYRRDNFKGVTIKLNAIVAKYEEQKEKIV DEIIYYVEEAIAQMDDNGLSKMKDIQVMPVIRSTSFDKKTKEGHQFVIEEHTAETNIYYA LDLGKSYRLIDESMLKTLGLTSQQIKEMSLFNIRKLENKYKTDEVKGNIFYFINSNDGYD ASRILNTKFLNEIEAQCEGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPI TSLSFGYKKEHLEPIFILGKNNKQKRDPNVIQRLEANRKKFNKK >gi|312979646|gb|ACRM01000019.1| GENE 76 78248 - 78844 745 198 aa, chain + ## HITS:1 COG:SA1563 KEGG:ns NR:ns ## COG: SA1563 COG0073 # Protein_GI_number: 15927319 # Func_class: R General function prediction only # Function: EMAP domain # Organism: Staphylococcus aureus N315 # 1 198 1 198 198 258 71.0 3e-69 MNLFYNKEGVGDVAFLQIEPTDGPFEYEIKNNVVAIKHENQIVGFNIFDFSKVYSVNSNG HIKLNETLVEAIQQSITNAGFDYQLEADLSPKFVVGYVETKEKHPNADKLSILKVDVSSE KLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMRELNLPNAPQE KGIMVLSDDYKVGNAFFD >gi|312979646|gb|ACRM01000019.1| GENE 77 78869 - 82426 3736 1185 aa, chain + ## HITS:1 COG:SA1562 KEGG:ns NR:ns ## COG: SA1562 COG1674 # Protein_GI_number: 15927318 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Staphylococcus aureus N315 # 231 1185 340 1274 1274 691 53.0 0 MSWFDELFGNDKHSDEELLRRKNKRRHNSETQKNGEHTLLPENDDIYDRPRGKFRFPIDL GQDAETYDEAVYREVDEDEYMSQKSSKSDKDFGYDAYSYDEIDNNDYPQTYDSATDTRRR RRRQYTNHDDTGVPSIKERPSNKRNKSLNSAQLNENNNRKTTSQYHKYTNNHSHVKLQSE RFKSNYKTTSNSTYHHSSFRTSEVPSAVFGTKKRRPIENGVIPPLKENENDDNHNDDKNN STQDQTAQRVSDNDVKTNISKSKNEPLNQTKYEDTDVSIINDQNSNIYETTSSKSKVPNF SQKDNTVNIENIYASQIVEEIRREREKKAQQKRKFKEALQNKRQQSSDSDNEIQKVIDEM YANQAKQYTGESSLDHEENNDDERTTHTEDSTDKMEDTNENTTDNHVIDEGTQTDSNTSN YDDDDEQYQYEEIDLKSVPNIQTVNDKDVEIREVNDTTSTDEHNDDQLSDNNLNVAPIHS TKDKHHHFNKNEDAHLSKVNKLQEDNYTSKEKVEEAKYHEMNVSSNEDITKQSNHNDDDI DHSIDNAIETDTEYASEQVEHNNDSVHDSSSNTEGEKLEDDDKQIVENEDVSSSIKSSII PGSKPFNVVMTPSDKKRLMDAKKFKKSNKVTVPELKPETKLERKSVSIPSSSPSVKATNN HEEHIKKNINEQSLQDNQEDETSELSNVQNENTQAISMTLNTQNEEQDENEQHESKATIR KGPNIKLPSLELLEDPEIHQIDNSWIEEKKQELNDAFYYFNVPAEVQNVTVGPSVTRFEL AVEKGVKVSRITALQDDLKMALAAKDIRIEAPIPGTSLVGIEVPNQNSSKVSLKSILESP KFKNTESKLTVAMGNRINNEPLLMDIAKTPHALIAGATGSGKSVCINSILMSLLYKNHPE ELRLLLIDPKMVELAPYNDLPHLVSPVITDVKAATQSLKWAVEEMERRYKLFAKYHVRNI TAFNKKASYEQRMPKIVIVIDELADLMMMAPQEVEQSIARIAQKARACGIHMLVATQRPS VNVITGLIKANIPTRIAFMVSSSVDSRTIIDSGGAERLLGYGDMLYLGSGMNKPIRVQGT FVSDEEIDDVVDFIKAQREPEYLFEEKELLKKTQTQARDELFDDVCSFMVKEGHISTSLI QRHFQIGYNRAARIVDQLEQLDYISGANGSKPRDVFITEADLKKD >gi|312979646|gb|ACRM01000019.1| GENE 78 82448 - 83761 1793 437 aa, chain + ## HITS:1 COG:SA1561 KEGG:ns NR:ns ## COG: SA1561 COG0773 # Protein_GI_number: 15927317 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate-alanine ligase # Organism: Staphylococcus aureus N315 # 1 437 1 437 437 723 81.0 0 MTHYHFVGIKGAGMSSLAQIMHDLGHEVQGSDIEKYVFTEGALKNKGIKILPFSVDNIHE GMVVIQGNAFPDTHEEIVRAHELKLDVIRYHDFLGQVINQYTSVAVTGAHGKTSTTGLLS HVMNGDKKTSFLIGDGTGMGLPGSDYFAFEACEYRRHFLSYHPDYAIMTNIDYDHPDYFK NIDDVASAFQEMANNVKKAIIAWGDDEHLRNLKADVPIYYYGLSKNDDVYADNIQITENG TQFDVYINGEYYDQFLTPQYGNHNVQNALAVITISYLEKMDVNNIKEALETFGGVKRRFN ETFVSKQVLVDDYAHHPREISATIETARKKYPNKDVVAVFQPHTFSRTQAFLDEFADALS KADHVFLCEIFGSIRENTGELTIQDLINRIDGSALIDENSIDVLEKFDNAVILFMGAGDI QKIQRAYEEKIGMSKEF >gi|312979646|gb|ACRM01000019.1| GENE 79 83839 - 84336 743 165 aa, chain + ## HITS:1 COG:SA1560 KEGG:ns NR:ns ## COG: SA1560 COG4768 # Protein_GI_number: 15927316 # Func_class: R General function prediction only # Function: Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain # Organism: Staphylococcus aureus N315 # 20 163 20 163 163 228 90.0 5e-60 MHWILPIAGIIAAIAFLILCIGIVVVLISVKKNLDHVAKTLDGVEGQVQGITRETTDLLH KANRLTEDIQGKVERLNSVVDGVKGIGDSVQTLNSSVDRVTNSITHNISQNEDKISQVVQ WSNVAMEIADKWQNRHYRRGSANYRANSVANDANQNYTTNVEKNF >gi|312979646|gb|ACRM01000019.1| GENE 80 84408 - 84639 317 77 aa, chain + ## HITS:1 COG:no KEGG:SH1184 NR:ns ## KEGG: SH1184 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 76 1 76 530 73 75.0 3e-12 MSKKYNRDSFETNNTSNDLHGRGANQQEDVAQSSATKHYDRDTFETNNTGNDLHGRGANQ QEDVAQSNATKHYDRDA Prediction of potential genes in microbial genomes Time: Sun May 29 09:23:08 2011 Seq name: gi|312979645|gb|ACRM01000020.1| Staphylococcus hominis subsp. hominis C80 cont1.20, whole genome shotgun sequence Length of sequence - 26868 bp Number of predicted genes - 24, with homology - 23 Number of transcription units - 17, operones - 5 average op.length - 2.4 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 1 - 624 695 ## SH1184 hypothetical protein + Term 630 - 679 13.5 + Prom 633 - 692 9.1 2 2 Tu 1 . + CDS 846 - 1937 1489 ## COG2876 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase + Term 1983 - 2037 8.1 + Prom 2028 - 2087 9.0 3 3 Op 1 . + CDS 2200 - 3189 1130 ## COG1609 Transcriptional regulators + Term 3195 - 3255 1.1 + Prom 3250 - 3309 9.2 4 3 Op 2 . + CDS 3438 - 5105 2223 ## COG2759 Formyltetrahydrofolate synthetase + Term 5117 - 5169 8.0 - Term 5108 - 5154 5.0 5 4 Op 1 . - CDS 5177 - 5293 75 ## - Prom 5315 - 5374 3.2 6 4 Op 2 . - CDS 5377 - 6264 749 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 7 5 Tu 1 . + CDS 6610 - 7872 724 ## PROTEIN SUPPORTED gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 + Term 7894 - 7950 14.3 - Term 7888 - 7931 10.2 8 6 Tu 1 . - CDS 7939 - 9195 1338 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 9215 - 9274 5.4 + Prom 9245 - 9304 5.5 9 7 Tu 1 . + CDS 9363 - 9980 772 ## COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase + Term 10006 - 10044 5.2 + Prom 10245 - 10304 10.6 10 8 Tu 1 . + CDS 10446 - 11906 1861 ## COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific + Term 11992 - 12035 7.2 + Prom 12011 - 12070 8.6 11 9 Tu 1 . + CDS 12102 - 13229 1276 ## COG0546 Predicted phosphatases + Term 13236 - 13281 7.5 - Term 13224 - 13269 7.5 12 10 Op 1 5/0.143 - CDS 13277 - 14872 1927 ## COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases 13 10 Op 2 1/0.857 - CDS 14862 - 16025 1066 ## COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase - Prom 16051 - 16110 9.7 14 11 Tu 1 . - CDS 16123 - 16572 456 ## COG1764 Predicted redox protein, regulator of disulfide bond formation - Prom 16647 - 16706 4.6 + Prom 16554 - 16613 8.7 15 12 Tu 1 . + CDS 16651 - 17397 675 ## COG0584 Glycerophosphoryl diester phosphodiesterase - Term 17392 - 17432 1.2 16 13 Tu 1 . - CDS 17449 - 18051 1027 ## PROTEIN SUPPORTED gi|228474508|ref|ZP_04059241.1| ribosomal protein S4 - Prom 18192 - 18251 3.4 17 14 Tu 1 . - CDS 18283 - 18750 337 ## PROTEIN SUPPORTED gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 - Prom 18776 - 18835 7.5 + Prom 18802 - 18861 7.9 18 15 Tu 1 . + CDS 18881 - 20575 2194 ## COG4477 Negative regulator of septation ring formation + Term 20592 - 20643 9.1 + Prom 20578 - 20637 9.4 19 16 Op 1 7/0.000 + CDS 20740 - 21876 1038 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 20 16 Op 2 1/0.857 + CDS 21877 - 23100 1347 ## COG0301 Thiamine biosynthesis ATP pyrophosphatase 21 16 Op 3 1/0.857 + CDS 23131 - 23916 881 ## COG0730 Predicted permeases + Prom 23918 - 23977 8.5 22 16 Op 4 3/0.143 + CDS 24010 - 24504 713 ## COG2077 Peroxiredoxin + Term 24547 - 24613 6.2 + Prom 24545 - 24604 7.6 23 17 Op 1 7/0.000 + CDS 24628 - 25575 1190 ## COG0827 Adenine-specific DNA methylase + Prom 25577 - 25636 3.1 24 17 Op 2 . + CDS 25658 - 26854 1527 ## COG0282 Acetate kinase Predicted protein(s) >gi|312979645|gb|ACRM01000020.1| GENE 1 1 - 624 695 207 aa, chain + ## HITS:1 COG:no KEGG:SH1184 NR:ns ## KEGG: SH1184 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 207 326 530 530 68 42.0 2e-10 RRAIQSETSSNLADESPQAQEIQEAKKEAIAKDEKQEETDALAAQRRAVQNESEINQLSN PARSHQTQNSENESQASKIASAARTKQAKLKDNKDVASNTQKLFEEAPITSSKYDKVPNL ITKNHKSFNKDEEITKNKQTHHDAKFEKGVITHQHQPSQSNSNQKNKKHNQKRKNQNQKN QNKNKTPKQQQRAEKANSKIEKRTFND >gi|312979645|gb|ACRM01000020.1| GENE 2 846 - 1937 1489 363 aa, chain + ## HITS:1 COG:SA1558_2 KEGG:ns NR:ns ## COG: SA1558_2 COG2876 # Protein_GI_number: 15927314 # Func_class: E Amino acid transport and metabolism # Function: 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase # Organism: Staphylococcus aureus N315 # 95 363 1 269 269 488 89.0 1e-138 MSTKLEQYREEIISINNQILDLLSKRGELAQKIGEEKIKQGTKVYDPQREKEMINELMDR NNGPFNDNVIKQLFKEIFKASTDLQKSENEKHLYVSRKLKPEDTIVKFDNGGVIGDGNKS FVFGPCSVESQEQVDAVARDLQAKGEKFIRGGAFKPRTSPYDFQGLGIEGLKILKNVKDK FNLNVVSEIVNPADFEIADEYLDVFQIGARNMQNFELLKEAGRTNKPILLKRGLSATIEE FTFAAEYIASQGNKNIILCERGIRTYEKATRNTLDISAVPILKQGTHLPVMVDVTHSTGR KDIMLPTAKAALAVGADGVMAEVHPNPSVALSDSGQQMDLNEFDKFYNELKPLADMYNSK QLK >gi|312979645|gb|ACRM01000020.1| GENE 3 2200 - 3189 1130 329 aa, chain + ## HITS:1 COG:SA1557 KEGG:ns NR:ns ## COG: SA1557 COG1609 # Protein_GI_number: 15927313 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 16 328 1 313 314 485 81.0 1e-137 MTVTIYDVAREARVSMATVSRVVNGNQNVKPETRKKVNDVIQRLNYRPNAVARGLASKRT TTVGVIIPDISNIYYSQLARGIEDIATMYKYHSIISNSDNDPEKEKEIFNNLLSKQVDGI IFLGGTISDEIKDLINHSSVPVVVSATNGKDDNIASVNIDFAKAAREVTEQLIKTGAKDF VLVSGDYSKKAQEDVLSGLKDALNKHQLKLNNTIELSGSESYKDGVNVFEKLKNNLPDAI LSISDEQAIGILHSALDAGIKVPEELQIVSFNNTRLVEMVRPKLSSVIQPLYDIGAVGMR LLTKFMNEEDIAEPNVVLPHRIEYRNTTN >gi|312979645|gb|ACRM01000020.1| GENE 4 3438 - 5105 2223 555 aa, chain + ## HITS:1 COG:SA1553 KEGG:ns NR:ns ## COG: SA1553 COG2759 # Protein_GI_number: 15927309 # Func_class: F Nucleotide transport and metabolism # Function: Formyltetrahydrofolate synthetase # Organism: Staphylococcus aureus N315 # 1 555 1 555 555 935 86.0 0 MAHLSDLDIANQSELKSIGDIAKKAGIPEHALEQYGHYKAKIDINQIQSRDEKGKVVLVT AMSPTPAGEGKSTVTVGLADAFNELNKNVMVALREPALGPTFGIKGGATGGGYAQVLPME DINLHFNGDFHAITTANNALSAFIDNHIHQGNDLAIDVRRVEWKRVLDMNDRALRNVIVG LGGPTNGVPREDGFNITVASEIMAILCLARNINDLKEKISRITVGYTRERKPITVADLKV EGALAMILKDAIKPNLVQTIEGTPALVHGGPFANIAHGCNSILATETARDLADIVVTEAG FGSDLGAEKFIDIKAREAGFEPSAVVLVATVRALKMHGGVAKDNLKEENVEAVKSGIVNL ERHVNNIRKFGVEPVFALNAFVHDTEDETEAVKAWAKENNVRIALTEVWEKGGKGGVDLA NQVLEVIDQPQEFKFLYDLDQSLEEKIETIVKEIYGGSSVTFSKKAKRQLKEFTDNGWGK YPICMAKTQYSFSDDATALGAPTDFDITIRELEAKTGAGFIVALTGAIMTMPGLPKKPAA LNMDVTDEGHAVGLF >gi|312979645|gb|ACRM01000020.1| GENE 5 5177 - 5293 75 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIVITQNIDISFKLPEIRLLIGFVAKLLVFSHAVLPTK >gi|312979645|gb|ACRM01000020.1| GENE 6 5377 - 6264 749 295 aa, chain - ## HITS:1 COG:SA1551 KEGG:ns NR:ns ## COG: SA1551 COG0744 # Protein_GI_number: 15927307 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Staphylococcus aureus N315 # 13 295 17 300 301 338 64.0 6e-93 MKLLFKDIQFKTFEKNYKFIKHIMVGLLSIIVLGSILIVLGTATYFHHLTQEASNISDTE LKHRVLHFSGDEILNHDKNILTEYDHSQNSLIVGPKHVNSNVIKALISSEDTLFFKHDGI LPKALIRAMIQDVLSLNSRSGGSTITQQLIKNQVLTNEKTYSRKANEIILAMRLEKILSK NEIIYTYLNIVPFGRDYNGANITGIASASYSLFNVPPSKLNVAQSAYLVGLLQSPYTYTP YENNGDLKAYNEVKISIDRQHYVLKRMLVEGVITKKTYQQAKQYTIYDHLLTKPQ >gi|312979645|gb|ACRM01000020.1| GENE 7 6610 - 7872 724 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163739624|ref|ZP_02147033.1| 50S ribosomal protein L32 [Phaeobacter gallaeciensis BS107] # 12 379 16 379 418 283 41 8e-76 MSKALLEELQWRGLIYQQTDEQGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFMTLRRF QEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEDQVAKNVEGLSAQMHKLFEFGTDKGAV LVNNRDWLSQISLISFLRDYGKHVGVNYMLGKDSIQSRLENGISYTEFTYTILQAIDFGH LNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTEAYGLTIPLVTKSDGKKFGKSESGAV WLDAEKTTPYEFYQFWINQSDEDVIKFLKYFTFLSKEDINRLEQSRDEAPHLREAQKALA ENVTEFIHGKEALDDAIRISEALFKGDLKSLSIKDIKAGFKEVPQVEVSKATTNIIDVLI ESGIASSKRQAREDVNNGAIYINGEREQSVDYNLTDEDKFDNEFTIIRRGKKKYFMVNYK >gi|312979645|gb|ACRM01000020.1| GENE 8 7939 - 9195 1338 418 aa, chain - ## HITS:1 COG:SA1549 KEGG:ns NR:ns ## COG: SA1549 COG0265 # Protein_GI_number: 15927305 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Staphylococcus aureus N315 # 1 410 1 411 424 518 70.0 1e-147 MTEYNQYFQSSDYQHSRPPKPKFPWFRIIIIALIAGIIGALIVLGVNRLMNGDDSNSGGS QVQQATNDKGGNVLDGKSDKYKSVNAMIKDVSPAIVGVINMQKATSFDDLLQGKSTKAQE AGIGSGVIYQINNNSAYIVTNNHVIDGASQIKVQLHNGKQVEAKLVGTDAVSDIAVLKID SQKGIKAMKFANSSKVQTGDSVFAMGNPLGLEFANSVTSGIISANERTIESNTTSGGTKV NVLQTDAAINPGNSGGALVDVNGNLVGINSMKIAADQVEGIGFAIPSNEVRVTIEQLVKH GKVERPSIGIGLLNLSDIPDSYKKELKTDRDTGVYIAKVSHSSELKVGDIITKVDSKKVD DDTDLRTYLYQNKKPGETVKLTVIRDGKTKDVSVTLKNQKSISSQSYNSEDNNSQFIR >gi|312979645|gb|ACRM01000020.1| GENE 9 9363 - 9980 772 205 aa, chain + ## HITS:1 COG:SA1548 KEGG:ns NR:ns ## COG: SA1548 COG0204 # Protein_GI_number: 15927304 # Func_class: I Lipid transport and metabolism # Function: 1-acyl-sn-glycerol-3-phosphate acyltransferase # Organism: Staphylococcus aureus N315 # 1 205 1 205 205 320 76.0 1e-87 MYKFISKFLELIIVKMARSLHIVGKENIPKDSKYVVTCTHESYNEVILLGLALIPNEIHY MAKKELFSNKWGGKFLRSLNAFPVDRENPGPSTLKQPVKLLKDHKTVGIFPTGHRTSVEG APLKRGAATIAMLGKAPILPAAYVGPTKLHGLVTGQAMIKFGKPIYQSDIPKDLKRNEKI DFLTKEIERRTAQLQHELHLIQERL >gi|312979645|gb|ACRM01000020.1| GENE 10 10446 - 11906 1861 486 aa, chain + ## HITS:1 COG:SA1547_1 KEGG:ns NR:ns ## COG: SA1547_1 COG1263 # Protein_GI_number: 15927303 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific # Organism: Staphylococcus aureus N315 # 1 414 1 417 417 567 74.0 1e-161 MFKFFQNLGRSLMLPVAVLPAGAIITGIGNLLNALHVLPTVAMFFSIVGTAILGQLGLIF AIGVAIGMAKKNDGAVALAGALGYAMVTKVLNPENVATLFNIKEKAVNLGFTKMDNSNVF LGIIIGLIAAYSFNKFSEVELPMALSFFSGKRLVPIMTVFFSTILAVILLFIWPMVFSGI VAFGEWLVGFGSFGAFLYGVFNRLLIPTGLHHALNAVFWFDTAGINDIGKFQTGVDAVKG ITGRYQAGFFPIMMFGIPAAALAMYHSAETKQQKQVWGWFLASAISAFVVGVTEPIEFAF MFVAPVLFIIHALLTGLSLFIASLFQWTAGFSFSAGLIDYVLSLINPVANHPLMLLVQGI VFFILYYVIFRIMIKVLNLNTIGRGDNLLADPIVEETTTIDKSKSGKYHQPATQILEGLG GKSNIDSLTNCATRLRLELKDNTIIDEQKIRNAGAVGVTKNGHHSTQVIIGTHVQQVADE IEKQMK >gi|312979645|gb|ACRM01000020.1| GENE 11 12102 - 13229 1276 375 aa, chain + ## HITS:1 COG:SA1546 KEGG:ns NR:ns ## COG: SA1546 COG0546 # Protein_GI_number: 15927302 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 1 374 1 375 376 419 57.0 1e-117 MKSILFDVDGVFLSEERCFDVSALTVEELLKSDDFLGLDSAQNFNHMNDELIEDIRTQVF LNDQILNQLKSLGLNSNWDMLFVVFSIHFIHLLKQLDSETIRQVTHVETFSVETLRELQS YNYQFKVNYAVPLKFIQNSQSGKENIYLELEDYAKDQLNIENAKLFNLKSPLWNLARAVY QEWYLGTTLYEKVEKLTPLSIPKSGFIYEEKILRPVEEIKTLLNDIKQAGFNIAIATGRP RTETIVPFESFGLKSFFNENHIVTASEVLKAESVFPKEGPLGKPNPFSYIATLYGNNEGD YLHYIQNQKHIVNENDVFIVGDSLADLLCAKKIGATFIGTLTGLSGKEAKEDLEQHGADY IVNHICDIRHILLNK >gi|312979645|gb|ACRM01000020.1| GENE 12 13277 - 14872 1927 531 aa, chain - ## HITS:1 COG:SA1545 KEGG:ns NR:ns ## COG: SA1545 COG0111 # Protein_GI_number: 15927301 # Func_class: H Coenzyme transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoglycerate dehydrogenase and related dehydrogenases # Organism: Staphylococcus aureus N315 # 4 531 5 532 534 660 63.0 0 MTHNILVSDPISEEGLQSLIHHPDFKVDFKSGLTEEELVDIIPNYQGLIVRSQTQVTESI INHASNLKVIARAGVGVDNIDIKSATLNGILVVNAPDGNTISATEHSVAMILAMARNIPQ AYTSLKNKEWNRKAFKGVELYQKVLGVIGAGRIGLGVAERLKSFGMTVLAYDPFLTKEKA EQLGIELATIDEIAQRSDFVTVHTPLTPKTKGIIDAHFFNQAKPTLQIINVARGGIINEN DLLNALNHHQIARAALDVFENEPPLDSPLLDHKNIIVTPHLGASTIEAQEKVAVSVAEEI IDILENGNVTNAVNAPKLNLNHIDEKTQQWLRISQLSGELAIQLLDDAPREIKVTFNGEN AKKESDLITRSIVTSILKQNLGERVNLINAIALLNEQGITHHIENRASQGTFSNYIQINL ISEHEEVKIGATVIDGFGARIVRINDYSVDFKPNTYQFISYHKDLPGMVGLTGQLLGKHD INIASMSLGRSSEGGQAMMILSIDQPITQQVIKELYEIGDFDNIYGTTLSI >gi|312979645|gb|ACRM01000020.1| GENE 13 14862 - 16025 1066 387 aa, chain - ## HITS:1 COG:SA1544 KEGG:ns NR:ns ## COG: SA1544 COG0075 # Protein_GI_number: 15927300 # Func_class: E Amino acid transport and metabolism # Function: Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase # Organism: Staphylococcus aureus N315 # 1 387 1 384 385 559 71.0 1e-159 MYYYEPLLLTPGPTPVPDEITHALNLSMIGHRSSDFEAVSEEAFNHLKPMFGTKNKVMIL TSSGTSVLEASMLNIVNPEDHFVVIVSGAFGNRFKQIAETYYKNVHVYDVEWGKAVDIEA FETYLHSLNYDITAVFTQFCETSTAVLHPIHELGKVIKAFNQDIYFVVDGVSCIGAVDVD LERDNIDVLVSGSQKALMLPPGLSFVAYNHRAQERFKAVKTPRFYLNLNKYFDSIEQNST PFTPNVGLFRAVNAYAALIKKEGFNNTIHRHYLIRDGLRESLKALDLKLLVTKDSYASPT VTSFIPHDKDELTYIKSTLKSRFNITIAGGQGKLKGTILRIGHMGKVSPFDILSVVSALE IILTDYRKVNYIGKATLKFTEVIQHDA >gi|312979645|gb|ACRM01000020.1| GENE 14 16123 - 16572 456 149 aa, chain - ## HITS:1 COG:SA1543 KEGG:ns NR:ns ## COG: SA1543 COG1764 # Protein_GI_number: 15927299 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 1 146 1 146 148 191 64.0 3e-49 MVKHDFVVHTSWRGGREEIGKVKGDVISEQISIPSSLGGNGTGTNPDEMLVAAASSCYII SLAATLERAKFTHIHLEIKSIGSAVFENGKFKMEKITHYPTISLTEEEKTRLNKRLPKLL DIADHHCMISNSIRNNVKIEIQATIQDEN >gi|312979645|gb|ACRM01000020.1| GENE 15 16651 - 17397 675 248 aa, chain + ## HITS:1 COG:SA1542 KEGG:ns NR:ns ## COG: SA1542 COG0584 # Protein_GI_number: 15927298 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Staphylococcus aureus N315 # 1 242 1 242 247 241 50.0 8e-64 MKIQKPNTSFQIVAHRGLSQKYPENTLEGFKAALMQHIDMLEIDVHFTKDKQLVVIHDDS IDRTSNQKGKVKDFTLEELKQFDFGIKHGESFKNTCISTFSEVLSLFKKYSKTLLIEIKK PEQYPGIEKALLEELDKFQIPSHRVVIQSFDVESVKKMSEYTKKYALGVLISKKQYWYKQ PDYENIASFAQFINPNYKLINKKFIKRAHEHHLKVIPYTVNNVKDVKKLIHLGVDGIISD IPDDIFKL >gi|312979645|gb|ACRM01000020.1| GENE 16 17449 - 18051 1027 200 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228474508|ref|ZP_04059241.1| ribosomal protein S4 [Staphylococcus hominis SK119] # 1 200 1 200 200 400 100 1e-111 MARFRGSNWKKSRRLGISLSGTGKELEKRPYAPGQHGPNQRKKLSEYGLQLREKQKLRYL YGMTERQFRNTFDIAGKQHGVHGENFMILLASRLDAVVYSLGLARTRRQARQLVGHGHIE VDGKRVDIPSYALKPGQVISVREKSQNLDIIKESVEINNFVPEYLDFDADSLKGTFVRLP ERSELPAEINEQLIVEYYSR >gi|312979645|gb|ACRM01000020.1| GENE 17 18283 - 18750 337 155 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15902812|ref|NP_358362.1| hypothetical protein spr0768 [Streptococcus pneumoniae R6] # 5 149 6 150 165 134 44 6e-31 MPTIKETNYNLLGKQLASLIEDETNLIAILSNTSALLNDNLDQINWLGFYLIENNELILG PFQGHPACMHISIGKGVCGTAVANNQTQLVDDVNTFPGHIACDANSKSEIVVPIHVNNEI IGVLDVDAPITQRFSKDDQQGLEEIVSILEHQLSK >gi|312979645|gb|ACRM01000020.1| GENE 18 18881 - 20575 2194 564 aa, chain + ## HITS:1 COG:SA1539 KEGG:ns NR:ns ## COG: SA1539 COG4477 # Protein_GI_number: 15927294 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Negative regulator of septation ring formation # Organism: Staphylococcus aureus N315 # 1 563 1 563 564 707 77.0 0 MVLYIILAIIIIILIAVGIMFYLRSNKRKMVEQAEERKLKVQQLPFEDNLEKLSALNLKG ETRTKYDALKQNTLDHTNNYLAPVEEKIHDAELQLDKFQFAGAQTEIDDAHELMDRYEAG YQSQVDEVNEILSLHKDNEAIYEKCKTDYREMKRDVLANRHQFGEAAAPLEKRIEAFEPE LDQYDMLKEEGNYVQAHNHINGLNESINETKEYMDEIPDLIRETKKELPGQFQDLKYGCR DLKVNGYDLDHVKIDGTLQSLKTELNFVEPMISRLELQEANDKLQQINDKLDEMYDLIEH EVKAKNEVEETKEDITNELFKAREMNYTLRTEIDYIRENYFINESDVHSIRQHENEIQNL VVVYDDILKEMSKSAVRYSEVKDNLEYLDEHVKVINEEQEKLQNHLIQLREDEAEAEDNL LKIQSKKEEIYRRLLASNLTSVPERFVIMKNEIDHEVRAVSEQFNERPLHVKQLKDKVSK IVIQMNTFEDEANDILVNAVYAERLIQYGNRYRKDHHTVDKSLNEAERLFKNNRYKRSIE VSEQALESVEPGITKHIENEVIKG >gi|312979645|gb|ACRM01000020.1| GENE 19 20740 - 21876 1038 378 aa, chain + ## HITS:1 COG:SA1538 KEGG:ns NR:ns ## COG: SA1538 COG1104 # Protein_GI_number: 15927293 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Staphylococcus aureus N315 # 1 378 1 379 379 450 62.0 1e-126 MIYLDNAATTKPNQAVLDSFLKVSEKAYYNANSPHQMGLQSEKILLQAKSRVKEMLNLNK NADIIFTSGATESNNIALKGIALRKKQFANVIITSVLEHPSVLEVMRYLETQGFILKYVN VTPNGQIDINHLEQLMTDNVGLVTCMYVNNVMGQIQPIKEIGSLLKQYPKAHFHVDGVQA LGKIPMQLEDVNSISFSGHKFNGLKGQGILIIDNKEKIEPTIFGGGQEYGIRSGTVNLAM NVSLVKAMEIAIQNLNELNHRLSRYNKVIRECLGQYKGMYINSPENSAPHILNIAFPGVK GEVLVNAFSKLDIMVSTTSACSSKREKLNEVLLAMGIKDNRIEGSVRLSMGETTTEKDIE QFKDKLELIYAQIKELLK >gi|312979645|gb|ACRM01000020.1| GENE 20 21877 - 23100 1347 407 aa, chain + ## HITS:1 COG:SA1537 KEGG:ns NR:ns ## COG: SA1537 COG0301 # Protein_GI_number: 15927292 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine biosynthesis ATP pyrophosphatase # Organism: Staphylococcus aureus N315 # 1 407 1 407 407 558 66.0 1e-159 MKYDHILVRYGELTLKGTNRRRFTNVLKENVIQSLRSLEGTQVKCERDRMFISLFEDVNV NEVINRLTKIFGIKSISPVFKTTQNLEDMKQLCISLAKDFANGDTFKVDVKRVDKSFSLD TYQLQRELGGAILKAVDHLKVDVKRPTHNIKVEVRKKGVYIYTKVINGAGGLPTGTGGKT LLQLSGGIDSPVAGMEIMKRGVKIEAIHFHSPPFTSEKAKDKVIELTRILSERVGPIKLH IVPFTALQKQINKSVHPRYTMTSTRRMMLRVTDIILERIGANAIVNGENLGQVASQTLKS MYAINDVTSTPILRPLISLDKEDIIKKAKEIGTFEVSIQPYEDCCTIFTPENPVTEPDFD KVVKYESVFNFDDLVQEAADNVETIEINKDYKTEKDKHTDALIDELF >gi|312979645|gb|ACRM01000020.1| GENE 21 23131 - 23916 881 261 aa, chain + ## HITS:1 COG:SA1536 KEGG:ns NR:ns ## COG: SA1536 COG0730 # Protein_GI_number: 15927291 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 4 259 1 256 256 269 69.0 4e-72 MGVIELSFHIIFIIISFGFLAAFIDAVVGGGGLISIPALLAIGMPPSLALGTNKLASAFG SLTSAIKFLKSGNVDKKIAFRLFPFVFIFAVGGASLATFLPSEVLKPLVIVILTFVLIYT IFKKEWGNVRTFSKFTITKAIAFISLLLLIGFYDGFLGGGTGSFMLFVLLMFGFDFLSAA GNAKVLNFASNVGALTLFIILGQVNITYGLIMAVSMVIGSYTGAHFAIKKGVGYVKIVFI IVTILLILKNTFDYIMQIISN >gi|312979645|gb|ACRM01000020.1| GENE 22 24010 - 24504 713 164 aa, chain + ## HITS:1 COG:SA1535 KEGG:ns NR:ns ## COG: SA1535 COG2077 # Protein_GI_number: 15927290 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peroxiredoxin # Organism: Staphylococcus aureus N315 # 1 164 1 164 164 265 76.0 2e-71 MTEITFKNNPIHLEGTEVSKGDVAPNFKVLDNSLNEVTLDNFKGQKKLISVVPSIDTGVC DQQTRKFNEEASQENGVVLTISADLPFAQKRWCASNGLENVITLSDHKDLSFGEHYGVVM KEMRLLARSVFVLDENNHVVYKELVQEGTDFPNFEAALEAYRNI >gi|312979645|gb|ACRM01000020.1| GENE 23 24628 - 25575 1190 315 aa, chain + ## HITS:1 COG:SA1534 KEGG:ns NR:ns ## COG: SA1534 COG0827 # Protein_GI_number: 15927289 # Func_class: L Replication, recombination and repair # Function: Adenine-specific DNA methylase # Organism: Staphylococcus aureus N315 # 1 315 1 315 315 501 82.0 1e-142 MAEEQTIMERLFRTLDDKAKSLNEENGQSFIENLGLAMEDVYRNQRTLLEQATFQDRRKA FQFAYLSLLQEENIQANHQITPDSIGLILGFLVQKFTENNKELQIVDIASGAGHLSATVN EVLKDSEVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADVVIGDFPIG YYPLDGRSKEMKLGFEEGHSYSHFLLIEQAVYALKQSGYAFLVVPSNIFEDEHVKQLQNF ITTETEMQAFLNLPKTLFKNENARKSILILQKKKANETKLVEVLLANIPDFKNPNQFHGF INELNEWMDANHSQK >gi|312979645|gb|ACRM01000020.1| GENE 24 25658 - 26854 1527 398 aa, chain + ## HITS:1 COG:SA1533 KEGG:ns NR:ns ## COG: SA1533 COG0282 # Protein_GI_number: 15927288 # Func_class: C Energy production and conversion # Function: Acetate kinase # Organism: Staphylococcus aureus N315 # 1 398 1 399 400 654 82.0 0 MSKLVLAINAGSSSLKFQLIRMPEEELVTKGLIERIGIKDSIFTIEVNGEKIKRVKDIKD HEEAINIMLDSFKKHGIINDINDIAGTGHRVVHGGELFPKSALVTDEVEEKIESLSELAP LHNPANLMGVRAFRKLLPNIPHVVVFDTSFHQTMPESSYLYSLPYNYYEDFGIRKYGFHG TSHKYVSRRAADILEKPIEELRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTR SGDIDPALIPFIMEKTGKTADEVLTVLNKESGLLGISGTSSDLRDLLGEAANGDERAELA LDIFASRIHKYIGSYAARMHGVDVIVFTAGVGENSSPIRAKILEGLEFMGVYWDPKKNES THGEEAFINYPHSPVKVIVVPTNEEVMIARDTVKFGEL Prediction of potential genes in microbial genomes Time: Sun May 29 09:23:47 2011 Seq name: gi|312979644|gb|ACRM01000021.1| Staphylococcus hominis subsp. hominis C80 cont1.21, whole genome shotgun sequence Length of sequence - 96920 bp Number of predicted genes - 88, with homology - 85 Number of transcription units - 41, operones - 23 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 74 - 128 15.0 1 1 Tu 1 . - CDS 147 - 644 668 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 790 - 849 7.2 + Prom 653 - 712 8.1 2 2 Tu 1 . + CDS 797 - 1915 1670 ## COG0686 Alanine dehydrogenase + Term 1937 - 1984 9.1 - Term 1912 - 1984 8.3 3 3 Tu 1 . - CDS 2005 - 3060 1388 ## COG0006 Xaa-Pro aminopeptidase - Prom 3087 - 3146 8.0 + Prom 3028 - 3087 6.8 4 4 Tu 1 . + CDS 3190 - 3879 1036 ## COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold + Term 3889 - 3935 6.0 - Term 3882 - 3918 5.0 5 5 Tu 1 . - CDS 3938 - 4351 684 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins - Prom 4419 - 4478 11.3 + Prom 4479 - 4538 10.6 6 6 Op 1 3/0.250 + CDS 4568 - 5866 1512 ## COG4109 Predicted transcriptional regulator containing CBS domains 7 6 Op 2 2/0.333 + CDS 5897 - 6835 618 ## PROTEIN SUPPORTED gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B 8 6 Op 3 1/1.000 + CDS 6856 - 10059 2352 ## COG0587 DNA polymerase III, alpha subunit + Prom 10493 - 10552 6.9 9 7 Op 1 10/0.000 + CDS 10645 - 11511 831 ## COG0777 Acetyl-CoA carboxylase beta subunit 10 7 Op 2 5/0.000 + CDS 11504 - 12448 968 ## COG0825 Acetyl-CoA carboxylase alpha subunit + Term 12453 - 12501 11.3 + Prom 12485 - 12544 13.4 11 8 Op 1 12/0.000 + CDS 12584 - 13588 1154 ## COG0205 6-phosphofructokinase 12 8 Op 2 . + CDS 13606 - 15366 2538 ## COG0469 Pyruvate kinase + Term 15450 - 15509 -0.9 - Term 15615 - 15657 2.0 13 9 Tu 1 . - CDS 15681 - 17033 1617 ## COG1113 Gamma-aminobutyrate permease and related permeases - Prom 17058 - 17117 12.1 + Prom 17200 - 17259 17.8 14 10 Op 1 4/0.000 + CDS 17382 - 18500 1595 ## COG0372 Citrate synthase 15 10 Op 2 1/1.000 + CDS 18536 - 19807 1804 ## COG0538 Isocitrate dehydrogenases + Term 19824 - 19880 9.4 + Prom 19948 - 20007 8.7 16 11 Op 1 40/0.000 + CDS 20039 - 20749 973 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 17 11 Op 2 1/1.000 + CDS 20749 - 22446 1563 ## COG0642 Signal transduction histidine kinase + Prom 22455 - 22514 7.7 18 12 Op 1 4/0.000 + CDS 22627 - 25263 3204 ## COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains 19 12 Op 2 4/0.000 + CDS 25279 - 26151 757 ## COG0266 Formamidopyrimidine-DNA glycosylase 20 12 Op 3 2/0.333 + CDS 26173 - 26775 747 ## COG0237 Dephospho-CoA kinase + Term 26779 - 26838 11.0 + Prom 26804 - 26863 10.7 21 13 Tu 1 . + CDS 26964 - 27989 1222 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase + Term 28107 - 28164 1.1 + Prom 28195 - 28254 8.9 22 14 Op 1 6/0.000 + CDS 28279 - 28749 408 ## COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 23 14 Op 2 8/0.000 + CDS 28750 - 30120 1337 ## COG3611 Replication initiation/membrane attachment protein 24 14 Op 3 2/0.333 + CDS 30121 - 31041 857 ## COG1484 DNA replication protein + Term 31274 - 31314 2.8 + Prom 31259 - 31318 9.2 25 15 Tu 1 . + CDS 31352 - 33289 2566 ## COG0441 Threonyl-tRNA synthetase + Term 33516 - 33572 9.8 + Prom 33532 - 33591 6.9 26 16 Tu 1 . + CDS 33666 - 35159 2056 ## COG0833 Amino acid transporters + Term 35270 - 35309 1.1 27 17 Op 1 36/0.000 + CDS 35328 - 35900 431 ## PROTEIN SUPPORTED gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 28 17 Op 2 46/0.000 + CDS 35928 - 36128 328 ## PROTEIN SUPPORTED gi|70726247|ref|YP_253161.1| 50S ribosomal protein L35 29 17 Op 3 1/1.000 + CDS 36182 - 36538 594 ## PROTEIN SUPPORTED gi|228475205|ref|ZP_04059931.1| ribosomal protein L20 + Term 36552 - 36594 6.3 + Prom 36573 - 36632 8.7 30 18 Op 1 . + CDS 36721 - 37332 841 ## COG4112 Predicted phosphoesterase (MutT family) 31 18 Op 2 . + CDS 37345 - 38262 1014 ## SH1249 hypothetical protein + Prom 38272 - 38331 5.6 32 19 Op 1 4/0.000 + CDS 38417 - 39733 2202 ## COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) + Term 39766 - 39817 9.0 + Prom 39798 - 39857 7.9 33 19 Op 2 4/0.000 + CDS 39891 - 41153 256 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 + Prom 41219 - 41278 11.5 34 19 Op 3 3/0.250 + CDS 41305 - 41895 739 ## COG0218 Predicted GTPase + Prom 41946 - 42005 6.2 35 20 Op 1 3/0.250 + CDS 42032 - 43369 1662 ## COG0373 Glutamyl-tRNA reductase 36 20 Op 2 3/0.250 + CDS 43391 - 44203 617 ## COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component 37 20 Op 3 23/0.000 + CDS 44232 - 45164 1189 ## COG0181 Porphobilinogen deaminase 38 20 Op 4 6/0.000 + CDS 45196 - 45867 708 ## COG1587 Uroporphyrinogen-III synthase 39 20 Op 5 7/0.000 + CDS 45867 - 46841 1302 ## COG0113 Delta-aminolevulinic acid dehydratase 40 20 Op 6 1/1.000 + CDS 46863 - 48146 1741 ## COG0001 Glutamate-1-semialdehyde aminotransferase + Prom 48161 - 48220 7.0 41 21 Tu 1 . + CDS 48294 - 49319 747 ## COG3180 Putative ammonia monooxygenase + Term 49320 - 49370 4.4 - Term 49308 - 49358 4.4 42 22 Tu 1 . - CDS 49368 - 49955 275 ## PROTEIN SUPPORTED gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) 43 23 Op 1 8/0.000 + CDS 50250 - 52880 3339 ## COG0525 Valyl-tRNA synthetase 44 23 Op 2 . + CDS 52892 - 54160 1505 ## COG0285 Folylpolyglutamate synthase + Term 54189 - 54239 8.0 + Prom 54649 - 54708 6.5 45 24 Op 1 . + CDS 54740 - 55099 149 ## gi|228475210|ref|ZP_04059936.1| type IV prepilin peptidase 46 24 Op 2 . + CDS 55123 - 55800 728 ## COG2003 DNA repair proteins 47 24 Op 3 . + CDS 55878 - 56159 214 ## SH1267 hypothetical protein 48 25 Tu 1 . - CDS 56251 - 56430 294 ## - Prom 56465 - 56524 9.1 + Prom 56360 - 56419 8.2 49 26 Op 1 . + CDS 56604 - 57068 499 ## SH1269 hypothetical protein + Prom 57070 - 57129 5.7 50 26 Op 2 . + CDS 57149 - 57277 204 ## + Term 57302 - 57355 6.0 + Prom 57355 - 57414 5.5 51 27 Op 1 19/0.000 + CDS 57448 - 58281 989 ## COG1792 Cell shape-determining protein 52 27 Op 2 1/1.000 + CDS 58281 - 58781 333 ## COG2891 Cell shape-determining protein + Term 58816 - 58874 -0.9 + Prom 58825 - 58884 6.4 53 28 Op 1 14/0.000 + CDS 58934 - 59242 518 ## PROTEIN SUPPORTED gi|228475190|ref|ZP_04059916.1| ribosomal protein L21 54 28 Op 2 14/0.000 + CDS 59245 - 59565 198 ## PROTEIN SUPPORTED gi|212638539|ref|YP_002315059.1| Predicted ribosomal protein 55 28 Op 3 14/0.000 + CDS 59577 - 59861 472 ## PROTEIN SUPPORTED gi|228475232|ref|ZP_04059958.1| ribosomal protein L27 + Term 59870 - 59918 7.1 + Prom 59915 - 59974 7.3 56 29 Op 1 3/0.250 + CDS 60005 - 61297 1768 ## COG0536 Predicted GTPase 57 29 Op 2 1/1.000 + CDS 61310 - 61765 400 ## COG4492 ACT domain-containing protein 58 29 Op 3 29/0.000 + CDS 61777 - 62382 704 ## COG0632 Holliday junction resolvasome, DNA-binding subunit 59 29 Op 4 4/0.000 + CDS 62412 - 63407 1136 ## COG2255 Holliday junction resolvasome, helicase subunit 60 29 Op 5 17/0.000 + CDS 63417 - 64442 1088 ## COG0809 S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) 61 29 Op 6 15/0.000 + CDS 64462 - 65601 1301 ## COG0343 Queuine/archaeosine tRNA-ribosyltransferase 62 29 Op 7 25/0.000 + CDS 65618 - 65878 513 ## COG1862 Preprotein translocase subunit YajC + Term 65883 - 65947 15.1 + Prom 65925 - 65984 6.1 63 30 Tu 1 3/0.250 + CDS 66075 - 68360 2589 ## COG0342 Preprotein translocase subunit SecD + Prom 68405 - 68464 8.8 64 31 Op 1 7/0.000 + CDS 68486 - 70759 2180 ## COG0608 Single-stranded DNA-specific exonuclease 65 31 Op 2 9/0.000 + CDS 70781 - 71299 870 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 66 31 Op 3 7/0.000 + CDS 71635 - 73824 2450 ## COG0317 Guanosine polyphosphate pyrophosphohydrolases/synthetases 67 31 Op 4 1/1.000 + CDS 73840 - 74292 492 ## COG1490 D-Tyr-tRNAtyr deacylase 68 31 Op 5 1/1.000 + CDS 74289 - 75164 900 ## COG0860 N-acetylmuramoyl-L-alanine amidase + Prom 75422 - 75481 4.5 69 32 Op 1 13/0.000 + CDS 75516 - 76793 1406 ## COG0124 Histidyl-tRNA synthetase 70 32 Op 2 . + CDS 76793 - 78559 2406 ## COG0173 Aspartyl-tRNA synthetase + Term 78595 - 78637 8.0 + Prom 78967 - 79026 7.4 71 33 Tu 1 . + CDS 79053 - 79829 753 ## COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 + Term 79830 - 79900 15.3 - Term 79823 - 79879 3.1 72 34 Tu 1 . - CDS 79885 - 81153 1272 ## COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase - Prom 81185 - 81244 7.9 + Prom 81062 - 81121 7.0 73 35 Tu 1 . + CDS 81237 - 81659 504 ## COG1959 Predicted transcriptional regulator + Prom 81669 - 81728 4.0 74 36 Tu 1 . + CDS 81769 - 81912 271 ## + Term 81923 - 81958 4.4 - Term 81950 - 82004 10.2 75 37 Tu 1 . - CDS 82011 - 83015 1512 ## COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases - Prom 83043 - 83102 8.6 + Prom 83075 - 83134 11.6 76 38 Op 1 7/0.000 + CDS 83215 - 84354 1257 ## COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes 77 38 Op 2 2/0.333 + CDS 84358 - 85470 1335 ## COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain + Term 85482 - 85524 3.6 + Prom 85472 - 85531 5.9 78 39 Op 1 4/0.000 + CDS 85557 - 86228 683 ## COG0457 FOG: TPR repeat 79 39 Op 2 1/1.000 + CDS 86230 - 88653 2749 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Term 88860 - 88906 8.8 + Prom 88853 - 88912 9.3 80 40 Op 1 4/0.000 + CDS 88933 - 91563 3097 ## COG0013 Alanyl-tRNA synthetase 81 40 Op 2 6/0.000 + CDS 91628 - 91888 395 ## COG4472 Uncharacterized protein conserved in bacteria 82 40 Op 3 7/0.000 + CDS 91889 - 92317 516 ## COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) 83 40 Op 4 1/1.000 + CDS 92332 - 92640 585 ## COG3906 Uncharacterized protein conserved in bacteria + Term 92656 - 92708 8.7 + Prom 92772 - 92831 6.8 84 41 Op 1 4/0.000 + CDS 92900 - 93535 473 ## COG4122 Predicted O-methyltransferase 85 41 Op 2 13/0.000 + CDS 93538 - 94461 1089 ## COG0826 Collagenase and related proteases 86 41 Op 3 3/0.250 + CDS 94475 - 95743 1379 ## COG0826 Collagenase and related proteases 87 41 Op 4 4/0.000 + CDS 95743 - 96366 627 ## COG0572 Uridine kinase 88 41 Op 5 . + CDS 96423 - 96899 696 ## COG0782 Transcription elongation factor Predicted protein(s) >gi|312979644|gb|ACRM01000021.1| GENE 1 147 - 644 668 165 aa, chain - ## HITS:1 COG:SA1532 KEGG:ns NR:ns ## COG: SA1532 COG0589 # Protein_GI_number: 15927287 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 1 164 1 164 166 271 81.0 3e-73 MLTYKNILIAVDGSHEAEWAFNKALDVAKRNDAQLTIVNIIDSRTYSSYEVYDAQFTEKS KGFSDELLKGYKEVASRAGVTNVETRLEFGSPKAIIPKKLANELGVDLIMCGTSGLNAVE RFIVGSVSEAIVRHAPCDVLVVRTEEIPDDFQPEVATPEFRKQFS >gi|312979644|gb|ACRM01000021.1| GENE 2 797 - 1915 1670 372 aa, chain + ## HITS:1 COG:SA1531 KEGG:ns NR:ns ## COG: SA1531 COG0686 # Protein_GI_number: 15927286 # Func_class: E Amino acid transport and metabolism # Function: Alanine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 371 1 371 372 634 86.0 0 MKIGIPKEIKNNENRVGLSPSGIHALVEQGHTVLVETNAGSGSYFEDEDYKQAGAEIVND AKTTWDVDMVIKVKEPLEEEYKYFREGLILFTYLHLANEEKLTQALVDNKVVSIAYETVQ LPDRSLPLLTPMSEVAGRMSAQIGAEFLQKINGGMGILLGGVPGVPKGKVTIIGGGQAGT NAAKIALGLGADVTILDVNPKRLAELEDLFDGRVNTIMSNPLNIENAVKESDLVIGAVLI PGAKAPSLVTEDMIKQMKDGSVVVDIAIDQGGIFETTDKITTHDDPTYVKHGVVHYAVAN MPGAVPRTSTIALNNATLPYAQLLANKGYKEAFKANEPLSLGLNTYKGYVTNKGVAESFD LTYTSIEDALKE >gi|312979644|gb|ACRM01000021.1| GENE 3 2005 - 3060 1388 351 aa, chain - ## HITS:1 COG:SA1530 KEGG:ns NR:ns ## COG: SA1530 COG0006 # Protein_GI_number: 15927285 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 1 351 8 358 358 558 77.0 1e-159 MIKTDEIIATLKEKNADAAWITTPLNIFYFTGYRSEPHERLFALLITSNGECTLYCPKME VEEVKHSPFNGNIVGYLDTESPFDLALHTFNTLLIESEHLTVKRQRELTNNFNVKAYEDI DLTIKKLRNIKDENEVKNIKKAAELADKCIDIGVSFLSEGVTEREVVNHIENEIKKYGVS EMSFDTMVLFGDHAASPHGTPGDRTLVKNEYVLFDLGVVYNHYCSDMTRTVKFGEPSKEA RTIYDIVLKAEQSAIEAIKPGIPLQNIDKIARDIISEAGYGDFFPHRLGHGLGLEEHEYQ DVSSTNTNLLEAGMVITIEPGIYVPNVAGVRIEDDILVTDTGFEVLTHYNK >gi|312979644|gb|ACRM01000021.1| GENE 4 3190 - 3879 1036 229 aa, chain + ## HITS:1 COG:SA1529 KEGG:ns NR:ns ## COG: SA1529 COG2220 # Protein_GI_number: 15927284 # Func_class: R General function prediction only # Function: Predicted Zn-dependent hydrolases of the beta-lactamase fold # Organism: Staphylococcus aureus N315 # 1 229 1 229 229 362 77.0 1e-100 MKLSFHGQSTIYFESNGKKVIVDPFISGNDKSDLDEQTLDVDYIILTHGHGDHFGDVVEL ANRNHATVIGSAEVQGYLTTYHGIEHAHGMNIGGKYKFDFGTVKFVQAFHSSSYTNEDGI PIYLGMPMGVIIEAEGKTIYHAGDTGLFSDMKLIAERHPVDVCFIPIGDNFTMGIEDASY AINEFIKPKISVPIHYNTFPLIEQDPEKFKEAVSQGEVQILQPGDEVTF >gi|312979644|gb|ACRM01000021.1| GENE 5 3938 - 4351 684 137 aa, chain - ## HITS:1 COG:SA1528 KEGG:ns NR:ns ## COG: SA1528 COG0589 # Protein_GI_number: 15927283 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Staphylococcus aureus N315 # 1 137 1 137 137 193 79.0 7e-50 MYKNILLGVDTQLKNDKALKEISKLAGPDTVVTIMNAIGEQDIQASIKGGTHIEQLTHRR DQGLEHTRHTLDDYGINYDQIIVRGNPKEELVKHANSGKYDIVVLSNRKAEQQKKFVLGS VSHKVAKRATIPVLIVK >gi|312979644|gb|ACRM01000021.1| GENE 6 4568 - 5866 1512 432 aa, chain + ## HITS:1 COG:SA1527 KEGG:ns NR:ns ## COG: SA1527 COG4109 # Protein_GI_number: 15927282 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing CBS domains # Organism: Staphylococcus aureus N315 # 1 432 1 432 432 544 65.0 1e-154 MTKHEQIVSYIESLNIGQKISVRKIAKVMNVSEGTAYRAIKDASQLGFVTTIDRVGTVRI DKKSREQIEHLTFQEIVNIIEGDIISGKSGLNKTVSKFAIGAMELKDVVKYIGNQTLLIV GNRPEVQMEALKRGSGILITGGFSTAQNIIDYANKQELPIISSNYDTFLVANIINRAMYN QMIRKEILIVEDIVKPINDMTVVFDEMGLDDYISRAKVTGHSRFPVVNKDWKLVGIVTSK EVIHMNEDDRMNKVMTRRPINVELTTTVASCAHIMIWEGIEILPVTTRNKKAIGVITRND VLKAMQLIGRQPQIGETIIDQIAKHISINHNETSVKISPVLTNQYGTLSKAICVAIIEET IKHELRKYKKVDVMIESLNIIYIKNVAIESTLDVKYNMLDVGRNFAKLEVTMTCKNEKVA NAMIICQMFEDI >gi|312979644|gb|ACRM01000021.1| GENE 7 5897 - 6835 618 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|149007035|ref|ZP_01830704.1| 50S ribosomal protein L31 type B [Streptococcus pneumoniae SP18-BS74] # 2 312 1 309 311 242 41 5e-63 MVEIFNKIMNEIDKYETVIIHRHVRPDPDAYGSQLGLKYYLQRKFPEKSIYAVGQPQSSL AFIGDLDRVRDDMYQNALVIVCDTANAPRIDDQRFNQGKDLIKIDHHPATDQYGRINYVD TNASSTSEIIFDFITHFNDINIIDESVARVLYLGIVGDTGRFLFSNTTPHTMNVASRLLE FPFNHNDVLNQLGEKDPKLMPFQGYILQNFQLSENHQYCQIKITKDVLNRFQIAPNEASQ FVNTVADIKGLKIWMFGVDEGDQIRCRLRSKGITINDIANQFGGGGHPNASGVSVENWEQ FEILGEALRQKL >gi|312979644|gb|ACRM01000021.1| GENE 8 6856 - 10059 2352 1067 aa, chain + ## HITS:1 COG:SA1525 KEGG:ns NR:ns ## COG: SA1525 COG0587 # Protein_GI_number: 15927280 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit # Organism: Staphylococcus aureus N315 # 1 1067 1 1065 1065 1398 66.0 0 MFVHLNIHSTYDLLYSSLKINDVVSKAKANGYQALAITDTNVLYGFPKFYDACVNEGIKP IFGMTVMVSDEISTIETILFAKNNEGLHALYQLSSAINMKQKTTIPLKWLQKYSYHLAIV FKDANASHQSLIQTLKNNESVFINHTSQLDFSDDKIVFLNNARYLNPEDADTILALKAIK NNTKLDLVNDIKDAHEYFPTSENIKELQLSEKIIANTKALADECNAEIQYHQNLLPNFKT PNQQSAKSYLLEKLKYNLKEFKLDKDQRYIDRLHHEYSIITNMGFEDYFLIVSDLIHFAK THDVMVGPGRGSSAGSLVSYLLGITTIDPIKFDLLFERFLNPERVTMPDIDIDFEDTRRE KVIQYVQEKYGQYHVSGIVTFGHLLARAVARDVGRIIGFDEKTLNEISNLIPHQLGITLE EAYQNEKFKAFVHKSYRHEKWFEISKKLEGLPRHTSTHAAGIIINDKPLYHFAPLTMGDT GILTQWTMTEAERLGLLKIDFLGLRNLSIIHQIITQVKKDLNIDIDIERLPFNDQKVFKL LSLGNTTGIFQLESEGVRKVLMELQPEHFEDIVAVTSLYRPGPMQEIPTYISRRHRQSEI KYLHPDLEPILKKTYGVIIYQEQIMQIASQFANFSYGQADILRRAMSKKNRAILESERQH FIEGAVSNNYDASISERIFELILKFADYGFPRAHAVSYSKIAYIMAYLKVHYPNYFYANI LSNVIGNETKTAIIIEEAKTQSLNILPPDINKSHWFYKATEKNIYLSLGAIKGVGYQSVK SIVDERIENGLYKDFFDFTRRIPKRIKTRKLLEALICVGAFDSFGKTRSTLLSTIDEVID QVSNVEQDEFLFNMLTPKQSYEDKEEFSDQIISAYEKEYLGFYISNHPVEKLFYIKQYLG IFTIKNSLDYQPILVQVNQFKQIRTKTGQHMAFLVLDDGRTTIDGVLFPDKYKQYETMIQ QQNDILVVHGKFEERNQKRQIIIQNMDTINDFENNKLSQAQQIVIRNVNQLEDIKSFLID QTTHNDLEVVLFNEMQQQTQSLGFLQKEMEQVERFIKMFKPSDIRII >gi|312979644|gb|ACRM01000021.1| GENE 9 10645 - 11511 831 288 aa, chain + ## HITS:1 COG:SA1523 KEGG:ns NR:ns ## COG: SA1523 COG0777 # Protein_GI_number: 15927278 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase beta subunit # Organism: Staphylococcus aureus N315 # 1 284 1 283 285 521 88.0 1e-148 MFKDFFNRSSKKKKYLTVPDSKQNDVPAGIMTKCPNCKKIMYTKELTENLNVCFNCDHHI ALPAYKRIEAISDENSFKEFDKEMVSSNPLDFPGYQEKVEKDQKKTGLNEAIVTGTAELD GVKYGIAVMDSRFRMGSMGSVVGEKICRIVDYCTEHRLPFVLFSASGGARMQEGIISLMQ MGKTSVSLKRHSDAGLLYVSYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQT INEKLPEDFQTAEFLLEHGQLDKVVHRKDMKATLSEILKLHQEVKTNA >gi|312979644|gb|ACRM01000021.1| GENE 10 11504 - 12448 968 314 aa, chain + ## HITS:1 COG:SA1522 KEGG:ns NR:ns ## COG: SA1522 COG0825 # Protein_GI_number: 15927277 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA carboxylase alpha subunit # Organism: Staphylococcus aureus N315 # 1 313 1 313 314 486 82.0 1e-137 MLDFEKSLYEIKEKINSLKESQEKNDVDLQDEIDLLEASLERERKKIYTNLKPWDRVQIA RLQERPTTLDYIPYIFDSFIELHGDRNFRDDPAMIGGIGYLNNQPVTIIGQQRGKDTKDN IYRNFGMAHPEGYRKALRLMKQAEKFKRPIFTFIDTKGAYPGKAAEERGQSESIAKNLIE MASLKVPVIGVVIGEGGSGGALGIGITNKLLMLENSTYSVISPEGAAALLWKDSSLAKMA AETMKITAKDLLELNVIDEVITEPQGGAHKDIVFQAKQIKQSFIHQLNELNKLDGQALAN HRFNKFRNIGTFIN >gi|312979644|gb|ACRM01000021.1| GENE 11 12584 - 13588 1154 334 aa, chain + ## HITS:1 COG:SA1521 KEGG:ns NR:ns ## COG: SA1521 COG0205 # Protein_GI_number: 15927276 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphofructokinase # Organism: Staphylococcus aureus N315 # 28 334 1 307 307 488 78.0 1e-138 MKIIIVRKGYVAMKRIAVLTSGGDSPGMNAAVRAVVRKAIYNNIEVFGVYQGYQGLLDDN IHKLELGSVGDTIQRGGTFLYSARCPQFKDESVRQKGIENLHKHGIEGLVVVGGDGSYRG AQRISEETTDIKTIGIPGTIDNDINGTDFTIGFDTALNTIIDCVDKIRDTASSHARTFVV EVMGRDCGDLALWAGLSVGAETILVPEVHTDIKDVAEKIESGIKRGKKHSIVMVAEGCMS GHECAEQLTKYINVDARVSVLGHIQRGGSPSGVDRVLASRLGGYAVELLMQGQTGFGVGI QNNQLTATPFDEIFNNESHKFNTRIYDLAKELSI >gi|312979644|gb|ACRM01000021.1| GENE 12 13606 - 15366 2538 586 aa, chain + ## HITS:1 COG:SA1520_1 KEGG:ns NR:ns ## COG: SA1520_1 COG0469 # Protein_GI_number: 15927275 # Func_class: G Carbohydrate transport and metabolism # Function: Pyruvate kinase # Organism: Staphylococcus aureus N315 # 1 476 1 475 475 771 87.0 0 MRKTKIVCTIGPASESEEMLEKLMNAGMNVARLNFSHGSHEEHKARIDSIRKVSKKLGKT IGILLDTKGPEIRTHDMKDGLIVLEKGKEVIVSMSQVEGTPEKFSVTYEDLINDVQIGSY ILLDDGLVELQVKDIDKDKGEVKCDILNTGELKNKKGVNLPGVKVNLPGITDKDAADIKF GIKEDIDYIAASFVRRPSDVLDIREILEQENNDNITIFPKIENQEGIDNIEEILEVSDGL MVARGDMGVEIPPESVPIVQKDLIRKCNKLGKPVITATQMLDSMQRNPRATRAEASDVAN AIYDGTDAVMLSGETAAGQYPEEAVKTMRNIAISAEAAQDYKKLLSDRTKLVETSLVNAI GVSVAHTALNLNVKAIVAATESGSTAITISKYRPHSDIIAVTPSEHTARQLALVWGAYPV VKKGRKTTDDLLNNAVATAVATEKVGNGDLIIITAGVPTGEKGTTNMMKLHLVGDEIAKG QGVGRGSTTGKTVISKTASDLEGKDLSQSIIVTNSIDESYVPYVEKAAGLITEENGITSP SAIVGLEQGIPTIIGVENATKELKNDLLVTVDANQGRIFEGYANVL >gi|312979644|gb|ACRM01000021.1| GENE 13 15681 - 17033 1617 450 aa, chain - ## HITS:1 COG:SA1519 KEGG:ns NR:ns ## COG: SA1519 COG1113 # Protein_GI_number: 15927274 # Func_class: E Amino acid transport and metabolism # Function: Gamma-aminobutyrate permease and related permeases # Organism: Staphylococcus aureus N315 # 4 449 3 448 453 650 83.0 0 MAEEKLQRGLSNRHVQLIALGGAIGTGLFLGAGQTIAMTGPSILLTYIIIGFMLFMFMRG LGEIIIQNTRFKSFADVTNEYIGPFAGFVTGWTYWLCWIITGMAEVTAVAKYVSFWFPTI PNWITALFCVLILMVFNLLSAKLFGELEFWFAIIKIITIIALIVIGAIMILFAYKTQFGH ASLTNLYKHGIFTNGTSGFFMSFQMALFSFVGIEMIGVTAGETKNPEKTIPKAIDAVPIR ILIFYVGALAVIMSIIPWDKVDPNESPFVRLFSLIGIPFAAGLINFVVLTAAASSCNSGI FSNSRMLFGLSEQKQAPSIFKSTNKQGVPHIAIIVSSALLLVTALLNYIFPNATLVFTYV TTISTVLFIIVWALIIWAYINYHRKNPELHKKAKFKLPGGKYMAYIILAFFLFVFCLLFV NATTRNAIFLTPIWFIILGIMYLRYKKVAK >gi|312979644|gb|ACRM01000021.1| GENE 14 17382 - 18500 1595 372 aa, chain + ## HITS:1 COG:SA1518 KEGG:ns NR:ns ## COG: SA1518 COG0372 # Protein_GI_number: 15927273 # Func_class: C Energy production and conversion # Function: Citrate synthase # Organism: Staphylococcus aureus N315 # 1 372 1 372 373 618 81.0 1e-177 MAELQKGLEGVIAAETKISSIIDSQLTYSGYDIDDLAENAQFEEIMFLLWNYRLPTQEEL EELKEKLKQYMTLNPRVYKHFEEYATDDVHPMTALRTSVSYIAHFDPDAEEETDESRKDR AIRIQAKIASLVTAFSRVREGKEPVKPNSDLSYAANFLYMLKGELPSDTEVEAFNKALIL HADHELNASAFTARCAVSSLSDMYSGIVAAIGSLKGPLHGGANEQVMKMLSEVKSLDEVD NYLDKKLANKEKIMGFGHRVYKEGDPRAKYLKEMSRKITSETRHNELYEISLAIEKRMHD EKGLIPNVDFFSATVYHSMEIPHDIFTPIFAVSRTAGWTAHILEQYRDNRIIRPRAKYVG ETNRKYVPVEER >gi|312979644|gb|ACRM01000021.1| GENE 15 18536 - 19807 1804 423 aa, chain + ## HITS:1 COG:SA1517 KEGG:ns NR:ns ## COG: SA1517 COG0538 # Protein_GI_number: 15927272 # Func_class: C Energy production and conversion # Function: Isocitrate dehydrogenases # Organism: Staphylococcus aureus N315 # 1 423 1 422 422 769 92.0 0 MAAEKITRANDELLNVPNEPIIPFIIGDGIGPDIWKAASRVVDAAVEKAYNDEKRIEWKE VLAGQKAYDETGEWLPQETLDTIKEYLIAIKGPLTTPIGGGIRSLNVALRQELDLFTCLR PVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTEEVKKVIDFLQNEMGATNIR FPETSGIGIKPVSKEGTERLVRSAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLA HNEFSDKVFTWQQYDEIAEKDGKDAANDAQQKAEKDGKIIIKDSIADIFLQQILTRPAEH DVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYANLNKVNPS SELLSSVLMLEHLGWKEAADKITDAIEATIASKIVTYDFARLMDGATEVSTSEFADELIK NLK >gi|312979644|gb|ACRM01000021.1| GENE 16 20039 - 20749 973 236 aa, chain + ## HITS:1 COG:SA1516 KEGG:ns NR:ns ## COG: SA1516 COG0745 # Protein_GI_number: 15927271 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 235 1 232 234 355 83.0 3e-98 MSQKVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVMLPKKD GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR SQIANEVVKDDVDDEDIVIDNIRIRPEFFEVYRDDTLLELTPKEFELLLYLIERQGRVIT REHMLNSVWNYEFAGDSRIVDVHISHLRDKLEENPKQPKLIKTVRGLGYKLERPKA >gi|312979644|gb|ACRM01000021.1| GENE 17 20749 - 22446 1563 565 aa, chain + ## HITS:1 COG:SA1515 KEGG:ns NR:ns ## COG: SA1515 COG0642 # Protein_GI_number: 15927270 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 565 1 554 554 584 58.0 1e-166 MIKFHHRLLLLLCTITIISFIGLGAILHHTIYQILSDTQTRELNHLSENIVNLNNRNKQA DIQRIAQNQNLVVEISENGHVLYQTGNQHQINHTIDNAANPSNIIYHKNKDKVDYTFKNT VSNKTIYISGINTEILDLQKNMWKYLSLIGIIVLIAIYLAVRSINRTYIRPINEVTYATS LIADGYYHVRVPESNVKETKALFVTTNDLARRLQKLNNKQKMQSNRLKTTLENIPSSVLM IDKQGEIVIANHAYYEVFKPDSKVENKDYTVHLDKEIQHLVIESFKTEKPLHEQIELYIN DVHQKYFDVSCIPILSKAKKKLQGMVVVLHDITNLKKLENLRREFVANVSHELKTPITSI KGFAETLIEGAKNDEQSLEVFLNIILKESNRIESLVMDLLDLSHIEQQTEIETTYVNLSD LAHNTIHNLQTQAKYKNIAIKSEIENDVIIEAHEGKLSQVITNLLSNAINYSYENNKVIV RVYREDIKVNLEIQDYGIGIDKKDQKHIFERFYRVDKARSRDSGGTGLGLSITKHIVEAL HGTIMVESELNKGSLFRVSFIDKIE >gi|312979644|gb|ACRM01000021.1| GENE 18 22627 - 25263 3204 878 aa, chain + ## HITS:1 COG:SA1513_2 KEGG:ns NR:ns ## COG: SA1513_2 COG0749 # Protein_GI_number: 15927268 # Func_class: L Replication, recombination and repair # Function: DNA polymerase I - 3'-5' exonuclease and polymerase domains # Organism: Staphylococcus aureus N315 # 327 878 1 552 552 845 79.0 0 MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAILGFAKLLEKIIREEQPTHFLVAFDAG KTTFRHSKYSEYKGGRQKTPPELSEQFPYIRQLLDAYHIKHYELENYEADDIIGTLSKEA DQNDFETIIVTGDRDLTQLATQNVTIYYTKKGVTDVDHYTPEFIAEKYNGLKPIQIIDMK GLMGDSSDNIPGVAGVGEKTAIKLLNQFDSVEGVYENIDKVSGKKLKEKLELSHEDALMS KELATINRYSPIEVTLNDTKLSDINDNHEKIELFKKLEFKQLLADIDNKASEFEQEQKQV SFDILPTFEYVDFNHLDEAVIHFEIDGSNYLKDDILKFGFYDKERYIVVDADNIKDYPEL IKWLENENSKKVVYDAKKTFVIAHRLNINIQNIVFDAMLASYIIDPSRTIDDVYSVVTNY HQTYVKEDVSIYGKGKKRHVPDTEILNTHIASITKSIDAVKPLMEKELESHQQMNLLKDL ELPLARILSKMEEIGIYTDVNDLQHMQQELQEKLELLVQRIHDAAGEEFNINSPKQLGVV LFETLKLPVIKKTKTGYSTAVDVLEQLQNEHPIINDILEYRQLAKLQSTYVEGLQKVISN DKRIHTRFNQTLAQTGRLSSVDPNLQNIPIRLEEGRKIRKAFKPSSEDSVILSADYSQIE LRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYGISD YGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRRRYIPDITS RNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQVQHTSYKAKLLLQVHDELIFEVPK SEVEEFSLFVEDIMEHALDLDVPLKVDSNYGPTWYDAK >gi|312979644|gb|ACRM01000021.1| GENE 19 25279 - 26151 757 290 aa, chain + ## HITS:1 COG:SA1512 KEGG:ns NR:ns ## COG: SA1512 COG0266 # Protein_GI_number: 15927267 # Func_class: L Replication, recombination and repair # Function: Formamidopyrimidine-DNA glycosylase # Organism: Staphylococcus aureus N315 # 1 290 1 290 290 426 69.0 1e-119 MPELPEVEHVKRGIEPFIVNATIKSISFSKKVIEGKSQNKETIIKGMNLDGFRLNCEGYK IIKVERRSKYIVFHIEKHNRKRVLLSHLGMAGGFFIVNHLSEIAIPNYRKHWHVIFHLNN GKKLVFSDIRRFGEIRNLNSFEDYPSFLEIAPEPFDEEALQHFNHYLSQKKVANKPIKQM LLDHKIIAGCGNIYACEALFRAGIHPARKVKDTSHQERQLLFYYVQEVLKEGIDNGGTSI SDYRHADGKTGKMQLHLNVYKQKTCKVCGHDIEQKVIASRNSHFCPYCQK >gi|312979644|gb|ACRM01000021.1| GENE 20 26173 - 26775 747 200 aa, chain + ## HITS:1 COG:SA1511 KEGG:ns NR:ns ## COG: SA1511 COG0237 # Protein_GI_number: 15927266 # Func_class: H Coenzyme transport and metabolism # Function: Dephospho-CoA kinase # Organism: Staphylococcus aureus N315 # 1 200 1 200 207 286 75.0 2e-77 MPKVIGLTGGIATGKSTVSKLLSEYGFKIVDADIASRKAVEKGSTALEQIKETFGDEAIT SDGEMNRQYIGELVFNHPEKRLELNEIIHPIVRTIMEQEKQQYLQQGYDVIMDIPLLFEN DLQDTVDEVWLVYTSESVQIERLMKRNNLDLDQAKARVHSQISIDKKSRMADHVIDNLGS KSELETLLKQLLIEKGYIHE >gi|312979644|gb|ACRM01000021.1| GENE 21 26964 - 27989 1222 341 aa, chain + ## HITS:1 COG:SA1510 KEGG:ns NR:ns ## COG: SA1510 COG0057 # Protein_GI_number: 15927265 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 340 1 340 341 553 82.0 1e-157 MSTNIAINGMGRIGRMVLRIALHNENFNVVAINASYPPETIAHLINYDTTHGRYDKKVEP IEDGIRVDNHNIKLVSDRNPENLPWKDLNIDIVIEATGKFNHGDKAVGHIHAGAKKVLLT GPSKGGEVQMIVKGVNDDKLDVEKYDIFSNASCTTNCIGPIAKVLNDQFGIVNGLMTTVH AITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGLALRVPTKNV SLVDLVVDLEKPVTVDEINNAFRHSDLDGVLEVENAPLVSVDFNTNPHSAIIDAENTIVM DDHKVKVIAWYDNEWGYSNRVVEVAEMIGEQLVEKSTVTAV >gi|312979644|gb|ACRM01000021.1| GENE 22 28279 - 28749 408 156 aa, chain + ## HITS:1 COG:SA1509 KEGG:ns NR:ns ## COG: SA1509 COG1327 # Protein_GI_number: 15927264 # Func_class: K Transcription # Function: Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains # Organism: Staphylococcus aureus N315 # 1 156 1 156 156 270 91.0 8e-73 MKCPKCSATHSRVVDSRHADEANAIRRRRECENCGTRFTTFEHIEVSPLIVVKKDGTREQ FLREKILNGLVRSCEKRPVRYQQLEDITNKVEWQLRDKGHTEISSRDIGEYVMNLLMHVD QVSYVRFASVYKEFKDVDQLLASMQGILDDNKRSDS >gi|312979644|gb|ACRM01000021.1| GENE 23 28750 - 30120 1337 456 aa, chain + ## HITS:1 COG:SA1508 KEGG:ns NR:ns ## COG: SA1508 COG3611 # Protein_GI_number: 15927263 # Func_class: L Replication, recombination and repair # Function: Replication initiation/membrane attachment protein # Organism: Staphylococcus aureus N315 # 1 456 1 463 466 493 59.0 1e-139 MSFKSYEYGLSPHDGFKVYRHFFFNHQQLEILNRLYIPLIGFKAIGVYHFMNQFIDEVED TILTHYTIMNELKINLLEFREYMDLLEGIGLIKTFVKHDSNQSLFIYELIQPPTAYQFFN DPMLSIYLYNEVDNRRYKDLKAYFEKDEPDLKEFQQVTRKFTDVFKVPHKNISIDASTIQ KENHSATIDLDNESFDFDMLRDMLQHHFISGEIITKEAKQLILQLATLYGLTPTSMKRII LNSITQNQTLSFEEMRKQARSHYLIEHQQQLPKLQTKANPSNHLEQSQRPNETTDDIKES DSWFKLLENTSPIDMLASWSESEPTLQQKRMVEELIEREKLSFGVINILLQFVMLKNEMK LPKSYIFEIASNWKKLGIKTAQQAYDYALKTNQQINDSITKKTKRQYKQRDVASIEKTPK WLKDKNQQDEKPNNNDAQFEKDREAFRAQLEQDWED >gi|312979644|gb|ACRM01000021.1| GENE 24 30121 - 31041 857 306 aa, chain + ## HITS:1 COG:SA1507 KEGG:ns NR:ns ## COG: SA1507 COG1484 # Protein_GI_number: 15927262 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Staphylococcus aureus N315 # 1 306 1 306 306 459 72.0 1e-129 MKPFSKLIKNQDNLNKRIAKIKHQVINDSDVKQFLNQHQSELTNEMIDKDLNVLQEYKDQ QKHYDGHDYAHCPNFVKGHIPELYIENERIKVRYRLCPCKIKYDEERLSSQLITAHHMQR DTLNAKVKDIYTNDRSRLEIAMEVNDICKKLVNGERVKGLYIHGPFGTGKSFILGAIANQ LKSKHVPSTIVYLPEYIRILKGGFKDGSYNEKLERIRETNILMLDDIGAEDVTTWVRDEV IGPLLHYRMVHELPTFFSSNLNLEELEHHLSISNKGAEITKAARIIERIKSLANEFYLDG KNLRNN >gi|312979644|gb|ACRM01000021.1| GENE 25 31352 - 33289 2566 645 aa, chain + ## HITS:1 COG:SA1506 KEGG:ns NR:ns ## COG: SA1506 COG0441 # Protein_GI_number: 15927261 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Threonyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 645 1 645 645 1176 89.0 0 MEQINIKFPDGNSKSFDKGTTTEDIAQSISPGLRKKAVAGKFNNQLVDLTRPLEEDGAIE IVTPGSDEALEVLRHSTAHLMAQALKRIYGDVKFGVGPVIEGGFYYDFDMDEKVSSDDFE KIEKTMKQIVNENYKIERKVVSREEAKDFFKDDPYKLELIDAIPEDENVTLYTQGEFTDL CRGVHVPSTSKIKEFKLLSTAGAYWRGDSDNKMLQRIYGTAFFDKKDLKAHLDMLEERRE RDHRRIGKDLELFTNNQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLAN VELYKTSGHWDHYRDDMFPPMKLDETEEMVLRPMNCPHHMMVYNNKPHSYRELPIRIAEL GTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKDEFKRVVHMIQDVYEDFGFEDYTF RLSYRDPEDKEKYMDDDDMWNKAESMLKEAVDEMGLPYVEAIGEAAFYGPKLDVQVKTAM GKEETLSTAQLDFLLPERFDLSYIGSDGENHRPVVIHRGVVSTMERFVAFLTEETKGAFP TWLAPKQVEIIPVNVDLHYDYARNLQDELKSQGVRVEIDDRNEKMGYKIREAQMQKIPYQ IVVGDKEVENNEVNVRKYGSQDQETIERDEFIWNLVDEIRLKRRR >gi|312979644|gb|ACRM01000021.1| GENE 26 33666 - 35159 2056 497 aa, chain + ## HITS:1 COG:SA1505 KEGG:ns NR:ns ## COG: SA1505 COG0833 # Protein_GI_number: 15927260 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 495 1 496 497 780 84.0 0 MSKVENQDSGMKRGLKDRHISMIAMGGCIGTGLFMTSGGAIHDAGALGALIAYAIIGAMV FFLMTSLGEMATYLPVSGSFSTYATRFVDPSLGFALGWNYWFNWVITVAADVTIAAQVIQ YWTPMAGIPAWVWSCIFIVIIFALNSLSVRVYGESEYWFALIKVITVIIFIIIGILTILG IMGGHFVGFETFTKGDGPILGGNLGGSLLSILGVFLVAGFSFQGTELIGITAGESENPER AVPKAIKQVFWRILLFYILAIFVIGMLIPYNSNALMGGDNDVATSPFTLVFKNAGLAFAA SFMNAVILTSVLSAGNSGMYASTRMLYSMSKDKLAFASFGKTNKHGVPYLSLIATGVLVV VIFLVQKLSGNAYEYIVAASGMTGFIAWVGIAVSHYRFRRAFNVQHHRKSELKYKAKWFP FGPIFAGILCVIVIVGQDVDFIKTGHFDLNRFIITYMGIPVFLVFFIYHKLRYKTKKIPL EEVDLSQDVSMNEVKHH >gi|312979644|gb|ACRM01000021.1| GENE 27 35328 - 35900 431 190 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|167856598|ref|ZP_02479300.1| 50S ribosomal protein L35 [Haemophilus parasuis 29755] # 33 186 2 156 159 170 53 2e-41 MSALFAWENFVKFWEVSTIAKNQTQVNEKIRAKELRLIGQNGDQIGVKSKREALEMAERV ELDLVVVAPNAKPPVARIMDYGKYKFEQQKKEKEMKKKQKVINVKEIRLSPTIEEHDFQT KLKNGRKFLTKGDKCKVSIRFRGRAITHKEIGQRVLEKFADECKDIATVEQKPKMEGRQM FIMLAPVNEK >gi|312979644|gb|ACRM01000021.1| GENE 28 35928 - 36128 328 66 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|70726247|ref|YP_253161.1| 50S ribosomal protein L35 [Staphylococcus haemolyticus JCSC1435] # 1 66 1 66 66 130 100 2e-29 MPKMKTHRGAAKRVKRTGSGQLKRSRAFTSHLFANKNTKQKRKLRKAKLVSKSDMKRVKQ LLAYKK >gi|312979644|gb|ACRM01000021.1| GENE 29 36182 - 36538 594 118 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228475205|ref|ZP_04059931.1| ribosomal protein L20 [Staphylococcus hominis SK119] # 1 118 1 118 118 233 100 3e-60 MPRVKGGTVTRARRKKTIKLAKGYFGSKHTLYKVAKQQVMKSGQYAFRDRRQRKRDFRKL WITRINAAARQHDISYSRLMNGLKKADININRKMLSEIAISDDKAFGELVSKAKDALK >gi|312979644|gb|ACRM01000021.1| GENE 30 36721 - 37332 841 203 aa, chain + ## HITS:1 COG:SA1501 KEGG:ns NR:ns ## COG: SA1501 COG4112 # Protein_GI_number: 15927256 # Func_class: R General function prediction only # Function: Predicted phosphoesterase (MutT family) # Organism: Staphylococcus aureus N315 # 1 202 1 202 202 284 76.0 6e-77 MSKFDEQIIVVSRELLFNNEKNAFNGFLSKNDGQGEEIFNTFKNYEVKRRGDMEEDPSYK QLISYCLLENENDEILVYQRLSGGGEERLHGQSSVGVGGHMNNVVGADSINEVLRVNAQR ELNEEVGLSEDRSQNIEYIGFINDDTNAVGKVHIGVVFKIKVKSSDVEVRETDTLKINWV SQDEINDLNHFESWSALILKDLK >gi|312979644|gb|ACRM01000021.1| GENE 31 37345 - 38262 1014 305 aa, chain + ## HITS:1 COG:no KEGG:SH1249 NR:ns ## KEGG: SH1249 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 304 1 304 307 346 61.0 6e-94 MSDIIPFPQSKQKLYHNILNAQQQNKYKEMYQLFDIYEASFELDNQLSLIKCDMLNELGL YLELREEAIIFLKKGIPHYDELIIFYIKALIGLNQNYEAIEVINQIINEVKEHKTRMALF PLKEYAQSKLDEDKKLSSQLLSEFTSLDLNRQTKLMIKLIDNGHYEFRKTVAFLLSNQVE SYNLKSLMLEYLRFSNYDSEIKIEKYGYEVNILPTTLKGLEHTDMKTTVIPKVLDRLENG ALNIQNEAQYVMNNHSIKLYPLDIFSLFNEEDWIIAYDVYFKSMIGIEVSEANQELLALI YQLDN >gi|312979644|gb|ACRM01000021.1| GENE 32 38417 - 39733 2202 438 aa, chain + ## HITS:1 COG:SA1499 KEGG:ns NR:ns ## COG: SA1499 COG0544 # Protein_GI_number: 15927254 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) # Organism: Staphylococcus aureus N315 # 1 433 1 433 433 608 87.0 1e-174 MTATWEKKEGNEGLLKVTVPAEKVNKALDQAFKKVVKQINVPGFRKGKVPRPIFEQRFGV EALYQDAVDILLPEAYGEAIEETKINPVAQPEINVTQIEKGKDFEFEATVTVEPEVKLGD YKGLEIEKQDSELTDKDLQDAIDHSLGHLADMVVKEDGAVEEGDTVNIDFDGYVDGEQFE GGQADGYDLEIGSGSFIPGFEDQLVGVKTGEEKDVVVTFPEEYHAEELAGKEATFKTKVN EIKYKEVPELTDEIANELDSDANSVDEYKENLRKRLSEEKAQDAENVEKEEAINKATENT TIDIPQAMIDTELDRMVQEFGQRIQQQGLDLQTYFQISGQDESQLREQMKDDAEQRVKTN LTLSAIADEENIEVTDEDIDKELEKMSSQFNISVEDIKQTLGNTDIIKNDVRIQKVIDLL RDNAKYVDSAKDDKKEDK >gi|312979644|gb|ACRM01000021.1| GENE 33 39891 - 41153 256 420 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 155 409 258 460 466 103 29 4e-21 MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQATSEEFTE LPTPKEIMDHLNDYVIGQEKAKKSLAVAVYNHYKRIQQLGPNEDDVELQKSNIALIGPTG SGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENILLRLIQAADFDIDKAEKGIIY VDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQELIQIDTTN ILFILGGAFDGIDEVIKRRLGEKVIGFASNEADKYDEEALLAQIRPEDLQAYGLIPEFIG RVPIVANLETLDVEALKNILTQPKNALVKQYTKMLALDNVELEFTEEALAAVSEKAIERK TGARGLRSIIEESLIDIMYDVPSTSDVAKVVVTAQTINDEIEPEMYDSEGNLLNGTKTSA >gi|312979644|gb|ACRM01000021.1| GENE 34 41305 - 41895 739 196 aa, chain + ## HITS:1 COG:SA1497 KEGG:ns NR:ns ## COG: SA1497 COG0218 # Protein_GI_number: 15927252 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Staphylococcus aureus N315 # 1 196 1 196 196 324 86.0 7e-89 MNINPNNIELMISAVKEEQYPETNLTEIALSGRSNVGKSSFINSMIGRKNMARTSQQPGK TQTLNFYNIDEQLIFVDVPGYGYAKVSKSQREKFGKMIEEYLTKRENLGLVIQLVDLRHN PTEDDVLMYNYLKHFDLPTLVICTKEDKIAKGKVQKHIKNIKQKLDLDPNDTIISYSSIQ NSKQQYIWDIIANYIN >gi|312979644|gb|ACRM01000021.1| GENE 35 42032 - 43369 1662 445 aa, chain + ## HITS:1 COG:SA1496 KEGG:ns NR:ns ## COG: SA1496 COG0373 # Protein_GI_number: 15927251 # Func_class: H Coenzyme transport and metabolism # Function: Glutamyl-tRNA reductase # Organism: Staphylococcus aureus N315 # 1 445 1 448 448 637 81.0 0 MHFIAISINHRTADVALREQVAFRDDALRLANEDLFETKAILENVILSTCNRTEVYAVVD QIHTGRYYIQRFLARSFGFKVDDIKAMSEVKVGDEAVEHLLRVTSGLDSIVLGETQILGQ MRDAFFLAQDLKTTGTIFNHLFKQAITFAKKAHNETDIADNAVSVSYAAVELSKKVLGKL KNKHAVIIGAGEMSELSLLNLLGSGINHITIVNRTESKARILAEKHQVSYDKLESLPSLL TSTDIVISSTSSPDYIITKSMINQALSYRKSKLLLLDIAVPRDIEPCHNLSDDVFNYDVD DLKGLVDANLKERQIAAEAISNEIPTEIKAHNDWVNMLGVVPVIRALREKAMTIQAETMD SIDRKLPNLSERERTVISKHTKSIINQMLKDPIKQAKELSNDKKSNEKLELFQNIFDIEA EDPYKAVKERKKEKELSVRHIFSFE >gi|312979644|gb|ACRM01000021.1| GENE 36 43391 - 44203 617 270 aa, chain + ## HITS:1 COG:SA1495 KEGG:ns NR:ns ## COG: SA1495 COG0755 # Protein_GI_number: 15927250 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome c biogenesis, permease component # Organism: Staphylococcus aureus N315 # 1 269 1 269 271 267 69.0 1e-71 MQETLFIRFHEIILIVYLISILCYFIDFVRKSHKIRVLGIYALGIVWFLQTISLSMYITS HSDILFNSIFDVFFFLSWMIISISLVLNIIKVLSFSVFFLNVIGFILLTMNTFRPEHYTN SIQRVQVINELLLVHVGLAVLSYAFFALAFVNALLYIIQYKNLKEKNFNQKYFRIGSVAT LEKIIFFSTLGGLVILILSVILIAQWGIYAVGVAIFKDPKVMLSVIITLLYTGYIVMYLK KKIISINLIYFNIMIFCLCMVNLFFTTHFN >gi|312979644|gb|ACRM01000021.1| GENE 37 44232 - 45164 1189 310 aa, chain + ## HITS:1 COG:SA1494 KEGG:ns NR:ns ## COG: SA1494 COG0181 # Protein_GI_number: 15927249 # Func_class: H Coenzyme transport and metabolism # Function: Porphobilinogen deaminase # Organism: Staphylococcus aureus N315 # 1 307 1 307 308 513 81.0 1e-145 MRKLVVGSRRSKLALTQSKQFIDKLKAIDPSLEIEIKEIVTKGDRIVNQQLSKVGGKGLF VKEIQNELFNNDIDMAIHSLKDVPSIIPEGLTLGCIPDREIPFDAYIAKNHVPLEELPKN SIVGTSSLRRGAQILSKYPHLKIKWIRGNIDTRLNKLETEDYDAIILAAAGLKRMGWSDD VVTTYLDKDTLLPAIGQGALGIECRRNDIELLELLQKVHNNEVANCVTAERTFLAAMDGS CQVPIGGYANYNNNNEIEFTGLIMTPDGKERYEHTEVGTDPVKLGNRVSEILKEQGAYEI IRKLNEEASH >gi|312979644|gb|ACRM01000021.1| GENE 38 45196 - 45867 708 223 aa, chain + ## HITS:1 COG:SA1493 KEGG:ns NR:ns ## COG: SA1493 COG1587 # Protein_GI_number: 15927248 # Func_class: H Coenzyme transport and metabolism # Function: Uroporphyrinogen-III synthase # Organism: Staphylococcus aureus N315 # 1 221 1 221 222 242 58.0 4e-64 MKPVIVMTQTSKVQSDMVEVIHKPFIKIQSLEFDTQLLHDNYDWLIFSSKNAVHLFYKYL EYVNVKHIAVVGAKTAQLCKQLGINIDFIPNDYSQEGLLEGLNLEKSSILIPSSAQARPK LQQTLAEHNNVVKIDLYTPIADRENIIEVINLIQHNQVEALTFSSSSAVRYYFSEAFPKH FKNYYAIGQQTANSIRAYGYEPYIADKQTSEALINTFLESRNK >gi|312979644|gb|ACRM01000021.1| GENE 39 45867 - 46841 1302 324 aa, chain + ## HITS:1 COG:SA1492 KEGG:ns NR:ns ## COG: SA1492 COG0113 # Protein_GI_number: 15927247 # Func_class: H Coenzyme transport and metabolism # Function: Delta-aminolevulinic acid dehydratase # Organism: Staphylococcus aureus N315 # 1 324 1 324 324 599 89.0 1e-171 MKFDRHRRLRSSATMRSLVRENHVRKEDLIYPIFVVEKDNVRSEIKSLPGVYQISLNLLD DEINEAYELGIRAIMFFGVPNEKDDVGSGAYDHNGIVQEATRRAKKLHKDLLIVADTCLC EYTDHGHCGIIDEHTHDVDNDKSLPLLVKTAISQVEAGADIIAPSNMMDGFVTEIRQGLD EAGYYNIPIMSYGIKYASSFFGPFRDAADSAPSFGDRKTYQMDPANRLEALRELESDLKE GADMMIVKPALSYLDIVRDVKNNTNIPVIAYNVSGEYAMTKAASQNGWIDEERVVMEQMV SMKRAGADMIITYFAKDICRYLDK >gi|312979644|gb|ACRM01000021.1| GENE 40 46863 - 48146 1741 427 aa, chain + ## HITS:1 COG:SA1491 KEGG:ns NR:ns ## COG: SA1491 COG0001 # Protein_GI_number: 15927246 # Func_class: H Coenzyme transport and metabolism # Function: Glutamate-1-semialdehyde aminotransferase # Organism: Staphylococcus aureus N315 # 1 427 1 427 428 773 88.0 0 MTYEKSQEAMRIAETLMPGGVNSPVRAFKSVDTPAIFMDHGEGSKIYDIDGNEYIDYVLS WGPLILGHKNKQVISKLHDAVDKGTSFGASTLEENKLAELVIERVPSIEKVRMVSSGTEA TLAALRLARGYTGKNKIVKFEGCYHGHSDSLLIKAGSGVATLGLPDSPGVPEGTAKNTIT VPYNDLDAIKVAFENYGDDIAGVIVEPVAGNMGVVPPKKGFLEGLREVTKEYDSLLIFDE VMTGFRVGYNCAQGYFGVTPDITCLGKVIGGGLPVGAFGGKKEIMDKIAPVGNIYQAGTL SGNPLAMTSGYETLSQLTPESYEYFQKLGDILEKGLKEVFAKHNVPITVNRAGSMIGYFL NKGPVTNFEEANQSDLELFSNMYREMAKEGIFLPPSQFEGTFLSTAHTKEDIEKTIHAFD NALSRIV >gi|312979644|gb|ACRM01000021.1| GENE 41 48294 - 49319 747 341 aa, chain + ## HITS:1 COG:SA1490 KEGG:ns NR:ns ## COG: SA1490 COG3180 # Protein_GI_number: 15927244 # Func_class: R General function prediction only # Function: Putative ammonia monooxygenase # Organism: Staphylococcus aureus N315 # 3 340 18 356 357 335 64.0 7e-92 MIMSLILKLSHMLLPFMFGPIIASIIVVKVLKLNIKWPFWISQIGLILLGVQIGSTFTSQ VINDIKNEWLTIVTVTVLLITLSLLIAYFFKKIARVNTETAILSVIPGALSQMLIMAEED KKANILVVSLTQTSRVIFVVVLVPLISFLFSNSSSSEEMIHKATPLTRALNVPQIALIMI SIAFVYFLMSKINFPTKQLLAPIIVLIVWNLSTHLIFTLDNYILAFAQVIYMIRIGLQIA HLLGDLKGRIAIAIMYQNISLILGSFLMVFMFHLFTHNSLNELFLDGAPGGMSQIVLVAI ATGADVAKISSFHIFRIFFILFLVAPIINYFLKRKKSDNQS >gi|312979644|gb|ACRM01000021.1| GENE 42 49368 - 49955 275 195 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157164512|ref|YP_001467500.1| 50S ribosomal protein L24 (BL23; 12 kDa DNA-binding protein; HPB12) [Campylobacter concisus 13826] # 11 189 1 179 185 110 30 3e-23 MISQSFGGIFMNACAFGTTDPIYLDYHNKVWGQPDFNSLSLFKLLALESQHAGLSWLTIL KKKEAYEKAFHQFDPIKISKMTEKDINALMTFPNIVHNRKKLEAIVSQAKGYLQIEKEYG SFSKFLWSYVDGHPIDLHYKTPSERITVDERAKQLSKDLKTYGFKFLGPVTVFSFMEAAG LYDAHLEGCPSKLNH >gi|312979644|gb|ACRM01000021.1| GENE 43 50250 - 52880 3339 876 aa, chain + ## HITS:1 COG:SA1488 KEGG:ns NR:ns ## COG: SA1488 COG0525 # Protein_GI_number: 15927242 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Valyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 876 1 876 876 1563 86.0 0 MKMESKYNPREVEAGRYEEWVKNEYFKPLEDESREAYTIVIPPPNVTGKLHLGHAWDTTL QDIITRMKRMQGYDTLYLPGMDHAGIATQAKVDAKLKEQGISRHDIGREKFLEHAWSWKE EYASFIRKQWAKLGLGLDYSRERFTLDDGLSKAVRKVFVDLYNKGIIYRGERIINWDPVA RTALSDIEVIHEDVQGHFYHFKYPYADGNGYIEIATTRPETMLGDTAIVVNPNDERYKDV IGKKVILPIIGRELPILADEYVDIEFGSGAMKVTPAHDPNDFEIGQRHHLENIIVMDENG KMNDNASQYAGLDRFECRKKLVEDLKAQDLVIKIEEHMHSVGHSERSGAVVEPYLSTQWF VKMKPLAQQALDNQKTDNRIDFYPPRFENTFNRWMEEIRDWTISRQLWWGHQIPAWYHNE TGEVYVGEEAPADIENWTQDEDVLDTWFSSALWPFSTLGWPNEEAKDYQHYYPTNVLVTG YDIIFFWVARMIFQGLEFTGKRPFNDVLLHGLVRAEDGRKMSKSLGNGVDPMDVIEKYGA DSLRYFLATGSSPGNDLRYSTEKVESVWNFINKIWNGARFSLMNIGEDFKVEDIDLSGNL SLADKWILTRLNETIETVTNLSEKYEFGEVGRALYNFIWDEFCDWYIEMSKIPMNGEDES QKQTTRSVLSYTLDQIMRMLHPFMPFVTEKIWQSLPHEGETIVKAAWPTVKEEFVFDESK QTMEQLVEIIKSVRQSRVEVNTPLSKSIPILIQAKNEEIETILEKNADYIHRFCNPSELT IDTNVDIPEKAMTAVVVSGKVILPLEGLIDMDKEIERLEKELDKLQKELDRADKKLSNEN FVNKAPEKIINEEREKQQKYQEKYNGVKNRIEQLKA >gi|312979644|gb|ACRM01000021.1| GENE 44 52892 - 54160 1505 422 aa, chain + ## HITS:1 COG:SA1487 KEGG:ns NR:ns ## COG: SA1487 COG0285 # Protein_GI_number: 15927241 # Func_class: H Coenzyme transport and metabolism # Function: Folylpolyglutamate synthase # Organism: Staphylococcus aureus N315 # 1 422 1 422 423 662 78.0 0 MNYLDSLYWIHERTKFGIKPGVKRMEWMLNHLNNPQLNIRGIHVGGTNGKGSTVAFLRAA LVENGYEVGTFTSPFIETFNERISLNGYPISNDEIVELVKRVKPVSEALEQETELGSATE FEIITTMMFLYFGDIHPVDFVIVEAGLGIKNDSTNVFTPILSILTSIGLDHTDILGSTYL DIAKDKGAIIKPNVPVIYAVKNEEALKYIRDLAENQNAKPIELDREIIIVSEDDEFTYRY KDYELETIILDMIGDHQKENASLAITALIELNEENIIELDFNKMIDAIESVCWTGRIEQV KEKPLIIIDGAHNNESVEALVSTIKNYYDLEKMDVLFSAIKGKPVNEMLSKLQNLAGTFY FTEFDFHKALSKQELLESIDADNIEYIDDYVDFINHYDGEGLLITGSLYFISEVKSKVEF NS >gi|312979644|gb|ACRM01000021.1| GENE 45 54740 - 55099 149 119 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475210|ref|ZP_04059936.1| ## NR: gi|228475210|ref|ZP_04059936.1| type IV prepilin peptidase [Staphylococcus hominis SK119] # 1 119 111 229 229 122 99.0 6e-27 MSLTDIQTLTINSNLILIFFIVGIYISSLHLISFIFIFFLLHTFYLLNSKSIGYGDILLL SILSIFYTYEFMLHLILLTCAIGLMFYIIMFRFKIRKIPLIPFISISYILLINFSNNIM >gi|312979644|gb|ACRM01000021.1| GENE 46 55123 - 55800 728 225 aa, chain + ## HITS:1 COG:BS_ysxA KEGG:ns NR:ns ## COG: BS_ysxA COG2003 # Protein_GI_number: 16079856 # Func_class: L Replication, recombination and repair # Function: DNA repair proteins # Organism: Bacillus subtilis # 1 224 8 231 231 228 51.0 9e-60 MKIKDMAKSELPKERLIQYGEKSLSNSELLAILINTGRRGVSSIDIANEMINKVNNLKEL KLLSIHDLLKIKGIGLHKAVTLKAAFELGERINKRNSIEKVKIKSPKDVADMMMSKMKDL TQEHLVALFLNTKNIVIKEETIFIGTLNSSVIHPREVFNAAIRASCNAIIVIHNHPSGDV TPSKEDIATTIRLKECGQILGIELLDHIIIGDQKFTSLVEEGYFV >gi|312979644|gb|ACRM01000021.1| GENE 47 55878 - 56159 214 93 aa, chain + ## HITS:1 COG:no KEGG:SH1267 NR:ns ## KEGG: SH1267 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 93 1 93 93 64 46.0 1e-09 MTLFLIIGVLIPIIYIMRLNIKQETIRLKETLNTVLLSIVGITTFSFIGVFVNQTHTQLY ILLISDIVTGTIFGLLLATIYKIYEYLSQSNRK >gi|312979644|gb|ACRM01000021.1| GENE 48 56251 - 56430 294 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNILTIILLILLAVILFKVGFALLRFLISAAFIILGLYLAYQGVLWILENFNVLSAYIR >gi|312979644|gb|ACRM01000021.1| GENE 49 56604 - 57068 499 154 aa, chain + ## HITS:1 COG:no KEGG:SH1269 NR:ns ## KEGG: SH1269 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 3 154 5 158 158 179 67.0 3e-44 MVFSIFKNIVAVIAILSIVYFALKYAPFLREQDWNPMNQPLSNQFELLPSNQTSTPVPTN GKSYTIEENNLLQNIPASQTKNVFKFIDKKEFMEVSGIVRMGYNENYIVGQRDNEFIIYK FGSDTIKVFSTEIEMEQELNRLGQSITLKPQNEY >gi|312979644|gb|ACRM01000021.1| GENE 50 57149 - 57277 204 42 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSEQSKEKQANEQAKAQNLFSKWRKDETLYEEDKKDNSNKKS >gi|312979644|gb|ACRM01000021.1| GENE 51 57448 - 58281 989 277 aa, chain + ## HITS:1 COG:SA1475 KEGG:ns NR:ns ## COG: SA1475 COG1792 # Protein_GI_number: 15927229 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Staphylococcus aureus N315 # 1 269 1 271 280 382 73.0 1e-106 MLNFFKNNKLIVVFCAIIIFIALIGLSIRSQTQSPPEQYVGDSVSFGQRVISYPVNFVTG AIGNFLKSNKSNHNEVNQLKAKNEALEAENKNLKKELDMTDASKYDAISGAIIARNPDQW MNTVIIDKGKKAGVSNNMAVFTSDGLIGRVTRVNQFSSQVDLLSTSTRAGKLSVNIQHHS KNVFGLIDQYDNKTQELIISNINNKDKISKGDKVVTSGLADQLPSDLYIGEVTKVENDEY GLAKEVRVKTGANLSDIQHVYIAKKSNNTDFNERETR >gi|312979644|gb|ACRM01000021.1| GENE 52 58281 - 58781 333 166 aa, chain + ## HITS:1 COG:SA1474 KEGG:ns NR:ns ## COG: SA1474 COG2891 # Protein_GI_number: 15927228 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell shape-determining protein # Organism: Staphylococcus aureus N315 # 1 164 1 164 176 105 48.0 4e-23 MKAFVYIMIGIIVFYLDTLISLVIPFHIGNLTFILVPHLTLMYLLLLSIYRPFMVTLLLS IFLGIITDIYFGSVYGLYLFGYIFLITIFNKFLKIFYRDYIMVYWFSIIGVMILEIFVAI IYSVISYVEFDLLNFILLRIIPTLILNIILLIIFMPIFFKFFKKPI >gi|312979644|gb|ACRM01000021.1| GENE 53 58934 - 59242 518 102 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228475190|ref|ZP_04059916.1| ribosomal protein L21 [Staphylococcus hominis SK119] # 1 102 1 102 102 204 100 2e-51 MFAIIETGGKQIKVEEGQEIFVEKLDVNEGDSFTFDKVLFVGGDSVKVGAPTVEGATVTA TVNKQGRGKKITVFTYKRRKDSKRKKGHRQPYTKLTIDKINA >gi|312979644|gb|ACRM01000021.1| GENE 54 59245 - 59565 198 106 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212638539|ref|YP_002315059.1| Predicted ribosomal protein [Anoxybacillus flavithermus WK1] # 1 106 1 109 111 80 41 2e-14 MITVDISINDEGKVTDVIMDGHANHGDYGYDIVCAGASAVLFGSVNAILSLTSEKPDIDY DDDGGHFHIRSVDTNNEQAQLILQAMLVSLQTIEDEYNENIRLNYK >gi|312979644|gb|ACRM01000021.1| GENE 55 59577 - 59861 472 94 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228475232|ref|ZP_04059958.1| ribosomal protein L27 [Staphylococcus hominis SK119] # 1 94 1 94 94 186 100 4e-46 MLKLNLQFFASKKGVSSTKNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYAGENVG RGGDDTLFAKIDGVVRFERKGRDKKQVSVYAVAE >gi|312979644|gb|ACRM01000021.1| GENE 56 60005 - 61297 1768 430 aa, chain + ## HITS:1 COG:SA1470 KEGG:ns NR:ns ## COG: SA1470 COG0536 # Protein_GI_number: 15927224 # Func_class: R General function prediction only # Function: Predicted GTPase # Organism: Staphylococcus aureus N315 # 1 430 1 430 430 728 90.0 0 MFVDQVKISLKAGDGGNGITAYRREKYVPFGGPAGGDGGKGASVIFEVDEGLRTLLDFRF QRHFKAKKGENGQSSNMHGKNAEDLVLKVPPGTIIKSVETEEVLADLVEEGQRAVIARGG RGGRGNSRFATPRNPAPDFSENGEPGEELDVTLELKLLADVGLVGFPSVGKSTLLSIVSK AKPKIGAYHFTTIKPNLGVVSTPDHRSFVMADLPGLIEGASEGVGLGHQFLRHVERTKVI VHMIDMSGSEGRDPLEDYQIINNELINYKQRLEDRPQIIVANIMDIPEAKDNLELFKKEI DEEVTIVPVSTITRDNIDQLLYTIADKLEEVKDIDFSVEEDEDAGVNRVLYKHTPSQDKF TITRDDDGAYVVSGNAIERMFKMTDFNSDPAVRRFARQMRSMGIDDALRERGCSNGDIVR ILGGEFEFVE >gi|312979644|gb|ACRM01000021.1| GENE 57 61310 - 61765 400 151 aa, chain + ## HITS:1 COG:SA1469 KEGG:ns NR:ns ## COG: SA1469 COG4492 # Protein_GI_number: 15927223 # Func_class: R General function prediction only # Function: ACT domain-containing protein # Organism: Staphylococcus aureus N315 # 1 151 2 152 152 210 81.0 8e-55 MDSKDYKKFYLIREDVLPESVVKTLKIKDALKNDSTLSIYEAVKQFNLSRSAFYKYRDTI FPVDDKIFEHREFTLILYVNDIVGMLAQVLQIISKLALSVLTIHQSVPMEEKATITLSLS AKDQSLSIEKVMGTLRNIQHVYKVELISMSM >gi|312979644|gb|ACRM01000021.1| GENE 58 61777 - 62382 704 201 aa, chain + ## HITS:1 COG:SA1468 KEGG:ns NR:ns ## COG: SA1468 COG0632 # Protein_GI_number: 15927222 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, DNA-binding subunit # Organism: Staphylococcus aureus N315 # 1 201 1 200 200 284 78.0 8e-77 MYAYIKGHLSQLFPTHIVVETSSGIGYEIQTPNSYRFQKYLNQECKVFTSLIVREDAQLL YGFISEEEKEMFLSLIKVTGIGPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKT ARQIVLDLKGKVKITEETSETLLQVEGQVEENDNIIKEALLALAALGYSKRELSKVEKVL NKTSIHSVDEAVKIGLKTLVS >gi|312979644|gb|ACRM01000021.1| GENE 59 62412 - 63407 1136 331 aa, chain + ## HITS:1 COG:SA1467 KEGG:ns NR:ns ## COG: SA1467 COG2255 # Protein_GI_number: 15927221 # Func_class: L Replication, recombination and repair # Function: Holliday junction resolvasome, helicase subunit # Organism: Staphylococcus aureus N315 # 1 331 1 331 334 598 90.0 1e-171 MDDRMVDQSLHNEESSFEFSLRPTKLKQYIGQSSIKNNLEIFIKAAKLRDEPLDHVLLFG PPGLGKTTLSNIIANEMEVNIRTVSGPSLERPGDLAAILSGLQPGDVLFIDEIHRLSSVV EEVLYSAMEDFFLDIIIGKGDEARSIRIDLPPFTLVGATTRAGSLTGPLRDRFGVHLRLE YYSESDLKEIIIRTAEVLGTKIDDESAVELAKRSRGTPRVANRLLKRVRDFQQVNEDEQI YIETTKQALNLLQVDDEGLDYIDHKMMNCIINQYNGGPVGLDTLAVSIGEERITIEDVYE PFLIQKGFIERTPRGRKATPFAYEHFKKTKE >gi|312979644|gb|ACRM01000021.1| GENE 60 63417 - 64442 1088 341 aa, chain + ## HITS:1 COG:SA1466 KEGG:ns NR:ns ## COG: SA1466 COG0809 # Protein_GI_number: 15927220 # Func_class: J Translation, ribosomal structure and biogenesis # Function: S-adenosylmethionine:tRNA-ribosyltransferase-isomerase (queuine synthetase) # Organism: Staphylococcus aureus N315 # 1 341 1 341 341 603 85.0 1e-172 MNVEEFDYHLPESLIAQTPLKNRDQSRLLVLGRKTGNIAHKHFTDIMDYFETGDTLVLND TRVMPARLFGLKEETGAKVEMLMLTRIEDNDWEVLLKPAKRIKVGNTLSFGNGKIIAECI KELEQGGRIMRLHFEGILEERLDELGEMPLPPYIKERLDDPDRYQTVYAKENGSAAAPTA GLHFTDELLQKIKDKGVNIAFITLHVGLGTFRPVSVEDINDHEMHSEYYQMTKETADILN KTKENGHRIISVGTTSTRTLETIRRDHEQFVATSGWTDIFIYPGFEYKAIDGLITNFHLP KSTLVMLVSAFSSREYILNAYKEAVKLKYRFFSFGDAMLII >gi|312979644|gb|ACRM01000021.1| GENE 61 64462 - 65601 1301 379 aa, chain + ## HITS:1 COG:SA1465 KEGG:ns NR:ns ## COG: SA1465 COG0343 # Protein_GI_number: 15927219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Queuine/archaeosine tRNA-ribosyltransferase # Organism: Staphylococcus aureus N315 # 1 379 1 379 379 777 95.0 0 MPAVTYEHIKTCKQSGARLGIIHTPHGSFETPMFMPVGTKATVKTMSPEELRQIEAKIIL GNTYHLWLQPGNDIIKQAGGLHKFMNWDGPILTDSGGFQVFSLSNLRKISEEGVEFRHHT NGSKLFLSPEKSMQIQNDLGSDIMMAFDECPPMPAEYKYVKDSIERTTRWAKRCLEAHQR PEDQALFGIIQGGEYKDLREQSAKELVSLDFPGYAIGGLSVGEPKPVMYDMVEHTVQFMP EDKPRYLMGVGSPDALIECSIRGMDMFDCVLPTRIARNGTCMTSQGRLVIKNAKYADDFS PIDENCDCYTCKNYTRAYIRHLIKAEETFGIRLTTIHNLHFLLKLMEDIRQAIREDRLLD FKEEFFEQYGLNVENPKNF >gi|312979644|gb|ACRM01000021.1| GENE 62 65618 - 65878 513 86 aa, chain + ## HITS:1 COG:SA1464 KEGG:ns NR:ns ## COG: SA1464 COG1862 # Protein_GI_number: 15927218 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit YajC # Organism: Staphylococcus aureus N315 # 1 86 1 86 86 121 74.0 3e-28 MNVSALILPIILIIVFYFFLIRPQQKRAKEHREMISRIEAGQKITTIGGIKGTVKAVDET AVVITVNGHGTEMTFEKPAIKQVDPS >gi|312979644|gb|ACRM01000021.1| GENE 63 66075 - 68360 2589 761 aa, chain + ## HITS:1 COG:SA1463_1 KEGG:ns NR:ns ## COG: SA1463_1 COG0342 # Protein_GI_number: 15927217 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecD # Organism: Staphylococcus aureus N315 # 1 452 1 450 450 660 83.0 0 MKKTSRIIAFILIVALLIVGMGFTYKNVVKNVNLGLDLQGGFEVLYQVKPLSGDGKIDDK ALQSTAQTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKNPDEARKILSSQANLTIRDAD DHVKLTGKDIVQGSAKQEFKQGTNEPAVTFKLKDRAKFKKVTEEISKKQENMMVVWLDYK KGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFQGQQGVERAKQIAELLNAGSL PVDLKEIYSNSVGAQFGQDALDKTIFASMVGVAIIYLFMVGFYRLPGIVAVIALTVYVYL TLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRVGRTLKQAYSKANKSSF LTIFDSNLTTVIAAAVLFFFGQSSVKGFATMLLLGILMIFITAVFLSRGLLSLLVSSNYF KKKYWMFGVNKNNRHDINEGVDVHDLKTAFEKWNFVKLAKPLIGVSILILVIGIIILSIF KLNLGIDFSSGTRVDLDSDTKLSQTKVERTIKDVGLTPDQIQINGNDNKQATVQFKNDLS KDETLKLNKVINDQYGHKPTVNTVSPMIGQELAKNAMKALIYAAIGIIIYVSLRFEWRMG LSAVLALLHDVFIIVALFSLLRLEVDITFIAAILTIVGYSINDTIVTFDRVRENLHKIKV ITEPHQIDDIVNQSIRQTMTRSVNTVLTVVVVVIAILIFGASSLFNFSLALLIGLLSGVF SSIFIAVPLWGIMKKHQLKKSENGKLVVYKEKKSNDEKILV >gi|312979644|gb|ACRM01000021.1| GENE 64 68486 - 70759 2180 757 aa, chain + ## HITS:1 COG:SA1462_1 KEGG:ns NR:ns ## COG: SA1462_1 COG0608 # Protein_GI_number: 15927216 # Func_class: L Replication, recombination and repair # Function: Single-stranded DNA-specific exonuclease # Organism: Staphylococcus aureus N315 # 1 557 1 557 557 780 68.0 0 MIQSKYKWLYEAPKQNISSEIIKEFNLSPIVRKILESKSITQYDEINTLINGTNKKHDSW LMSDMQKAVDRINLAIDKNERILVYGDYDADGVTSTTILVQTLRKLGAEVGWYIPNRFSE GYGPNKYAFQNAYDEGVSLIITVDNGIQGHEEIEMVQVLGVDVIVTDHHEIGRTLPKAYA IIHPMHPEFEYPFKYLCGAGVAYKLSQCLIDHPPEYFIVLATIGTIADLVSLTDENRTIV QEGLKYLNQSCPFQIQSLLNQAGFNDEIDEETIGFIIGPRLNAVGRLEDASLAAELLMAE DSEEANFLAEQVEAFNIERKDIVAQITEEALLMANEKVENGDKFLLLAKEGWHEGVLGIV ASKIVETYALPTLILNIDLEQHHAKGSARSIEQVSMFEILSAHQDLISKFGGHHMAAGMT MEIDNIDALSKGLNEWMVQLSKHTSLEPTKHITTKLSEDDITVSNIHDIKILKPFGTDFE KPLFELDDTEVNDVKAIGKDKNHLKLVTGQAKLQHLFWKNGGLITQIELGQPVNIIGHLQ INEWNGNQTPQMMIQDLATQNEQILDYRSKRKQLNIDTSSKNVAFVIHSKKEKLGENYFH YGETIDSSYNTIVFRDLPTDLDSVKQSLKHLEYSQLYLVLHHQHSIYFEGLPSSHLFKQS YKALFIRKEMNLEKEGLQLCQYLNIKPNTLKFILKVFLDLSFIYEENGIIKINDNPSKQS IESSQVYKSRQSRIEVEKLMLYDDFSHLKNWIKAQKA >gi|312979644|gb|ACRM01000021.1| GENE 65 70781 - 71299 870 172 aa, chain + ## HITS:1 COG:SA1461 KEGG:ns NR:ns ## COG: SA1461 COG0503 # Protein_GI_number: 15927215 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Staphylococcus aureus N315 # 1 172 1 172 172 319 97.0 2e-87 MDLKQYVSEVQGWPKPGVSFKDITTIMDNGEAYGYATDQIVKYAKDRNVDIVVGPEARGF IIGCPVAYSMGIGFAPVRKEGKLPREVIRYEYDLEYGTNVLTMHKDAIKPGQRVLITDDL LATGGTIEAAIKLVEKLGGIVVGIAFIIELKYLNGMEKIKDYDVMSLISYDE >gi|312979644|gb|ACRM01000021.1| GENE 66 71635 - 73824 2450 729 aa, chain + ## HITS:1 COG:SA1460 KEGG:ns NR:ns ## COG: SA1460 COG0317 # Protein_GI_number: 15927214 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Guanosine polyphosphate pyrophosphohydrolases/synthetases # Organism: Staphylococcus aureus N315 # 1 729 1 729 729 1309 89.0 0 MNNEYPYSADEVLNKAKSYLSADDYQYVLKSYHIAYEAHQGQFRKNGLPYIMHPIQVAGI LTEMRLDGPTIVAGFLHDVIEDTPYTFEDVKNMFNEEIARIVDGVTKLKKVKYRSKEEQQ AENHRKLFIAIAKDVRVILVKLADRLHNMRTLKAMAREKQIRISKETLEIYAPLAHRLGI NTIKWELEDIALRYIDSVQYFRIVNLMKKKRSEREAYIQNAMDKIQTEMNKMNIQGEISG RPKHIYSIYRKMVKQKKQFDQIFDLLAIRVIVNSINDCYAILGLVHTLWKPMPGRFKDYI AMPKQNMYQSLHTTVVGPNGDPLEIQIRTFEMHEIAEHGVAAHWAYKEGKTINSKTQDFQ NKLNWLKELAETDHTSSDAQEFMESLKYDLQSDKVYAFTPASDVIELPYGAVPIDFAYAI HSEVGNKMIGAKVNGKIVPIDYILKTGDIIEIRTSKHSYGPSRDWLKIVKSSGAKSKIKS FFKKQDRSSNIEKGKFMVEAEIKEQGYRVDEILTEKNIEVVNEKYHFANDDDLYAAVGFG GVTALQVVNKLTERQRIQDKQKALNEAQEVIKTSPIKEDIITDSGVYVEGLENVLIKLSK CCNPIPGDDIVGYITKGHGIKVHRSDCPNIKNENERLINVEWVKSKDSTQRYQVDLEVNA YDRNGLLNEVIQAVNSTVGSIIKMNARSDIDKNAIITISVMVKNVNDVFRVVEKLKQLSD IYTVSRVWN >gi|312979644|gb|ACRM01000021.1| GENE 67 73840 - 74292 492 150 aa, chain + ## HITS:1 COG:SA1459 KEGG:ns NR:ns ## COG: SA1459 COG1490 # Protein_GI_number: 15927213 # Func_class: J Translation, ribosomal structure and biogenesis # Function: D-Tyr-tRNAtyr deacylase # Organism: Staphylococcus aureus N315 # 1 149 1 149 150 201 70.0 5e-52 MKIVVQRVKRASVTNKSIHNQIEKGYCLLVGVGKNSTEADIEVLAKKIVNARLFEDDNGK LNLNIQQINGAILSISQFTLYAEVKKGNRPGFSQSMRPEDAKILYDKFNFELQKYDIDIQ TGEFGTDMEVEIINDGPVTIIYESQDGKVI >gi|312979644|gb|ACRM01000021.1| GENE 68 74289 - 75164 900 291 aa, chain + ## HITS:1 COG:SA1458 KEGG:ns NR:ns ## COG: SA1458 COG0860 # Protein_GI_number: 15927212 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Staphylococcus aureus N315 # 1 291 1 291 291 375 67.0 1e-104 MNKLDTWLTKHDLKNMLTLVVVLLFILFIILLFMFMNHNDQDSNRLTITEDAEIRTGPNA GYPVIYKVEKGDSFKKLKTTGKWIEVQNAKGDKKGWVAGWHTSLNIKADVNKQENPFKNK TVVLDPGHGGSDQGASSSTALKSLEKNYTLKTALELKRALEKAGAHVKLTRTDDSYVSLD NRKATGDVFISIHNDSLDSHNANGATVYWYQNSQETLAEILNANIQKKSLLSNRGVRQQN YQVLRQTNKPAVLLELGYISNPTDEKMIRNQLHRQVVEEAVVDGLKQYFAS >gi|312979644|gb|ACRM01000021.1| GENE 69 75516 - 76793 1406 425 aa, chain + ## HITS:1 COG:SA1457 KEGG:ns NR:ns ## COG: SA1457 COG0124 # Protein_GI_number: 15927211 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Histidyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 420 1 420 420 706 85.0 0 MIKIPRGTQDILPQESAKWRYIENKLDELMKLYNYKEIRTPIFESTDLFARGVGDSTDVV QKEMYTFKDKGDRSITLRPEGTAAVVRSYIENKMQGEPNQPIKLYYNGPMFRYERKQKGR YRQFNQFGVEAIGAENPSIDAEVLAMVMHIYESFGLKHLKLVINSIGDQASRKEYNEALM KHFEPVIDTFCNDCQSRLHTNPMRILDCKIDRDKEAVKHAPRITDYLNDESKAYYEAVKH HLDQLDINYVEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPK QTGIGFALSIERLLLALEEEDIELNVDEDFDLFVVTMGKKAEQYSVKLLNDLRKHGVKAD KDYLNRKIKGQMKQADRLNAKYTIVIGDQELNNNKIDVKEMSTGETKTIQLDEVVSFFNK EKENK >gi|312979644|gb|ACRM01000021.1| GENE 70 76793 - 78559 2406 588 aa, chain + ## HITS:1 COG:SA1456 KEGG:ns NR:ns ## COG: SA1456 COG0173 # Protein_GI_number: 15927210 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 588 1 588 588 1027 87.0 0 MGKRTTYCGLVTEELLGQKVTLKGWVHNRRDLGGLIFVDLRDREGIVQIVFNPDFSKEAL SIAETVRSEYVVEVEGSVTKRDPETVNPKIKTGQVEVQVSHIHIINKSATPPFSINEENQ SVDENIRLKYRYLDLRRPELAQTFKMRHQTTRSIRQYLDNNGFFDIETPVLTKSTPEGAR DYLVPSRVHEGEFYALPQSPQLFKQLLMISGFDKYYQIVKCFRDEDLRADRQPEFTQVDI EMSFVDQEDIIQMGEEMLSKVVKDVKGIDIQTPFPRMTYDEAMKRYGSDKPDTRFGMELQ DVSQLGKEMDFKVFKDTVEHDGEVKAIVAEGAADNYTRKDMDGLTEFVNIYGAKGLAWVK VVDEGLSGPIARFFEEENVNTLKELTGAKPGDLVMFVADKPNVVAQSLGALRIKIAKELK LIDESKLNFLWVTDWPLLEYDEDAKRYVAAHHPFTSPKDEDIAKLDSEPEKVQANAYDVV LNGYELGGGSIRISDGELQEKMFEVLGFTKEQARDQFGFLLDAFKYGAPPHGGIALGLDR LVMLLTNRTNLRDTIAFPKTASATCLLTDAPSEVSDKQLEELSLRIRH >gi|312979644|gb|ACRM01000021.1| GENE 71 79053 - 79829 753 258 aa, chain + ## HITS:1 COG:SA1455 KEGG:ns NR:ns ## COG: SA1455 COG1179 # Protein_GI_number: 15927208 # Func_class: H Coenzyme transport and metabolism # Function: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 # Organism: Staphylococcus aureus N315 # 1 256 1 256 257 433 88.0 1e-121 MKHQFSRNELAYGQEGLDLLKDKTVAVLGVGGVGSFAAEALARTNIGHIILIDKDDVDIT NVNRQIHALTTTIGQSKVTLMEERIKLINPNCKVTPLHMFYTEETYEDIFNNYNIDYFID ASDTIIYKVHLMKECLDRGIKLISSMGAANKIDPTRFKIADISKTYMDPMAKIIRNKLKK LGIKKGVPVVFSDESPIVIREDVKKTVGDANAINRKGQMPPSSNAFVPSTVGLICASYVV NDILKDIPVRRIKDKGNN >gi|312979644|gb|ACRM01000021.1| GENE 72 79885 - 81153 1272 422 aa, chain - ## HITS:1 COG:SA1454 KEGG:ns NR:ns ## COG: SA1454 COG2256 # Protein_GI_number: 15927207 # Func_class: L Replication, recombination and repair # Function: ATPase related to the helicase subunit of the Holliday junction resolvase # Organism: Staphylococcus aureus N315 # 1 418 1 419 424 722 88.0 0 MNTEPLASRMRPTNINEIISQQHLVGPRGIIRRMIETKKLSSMIFYGPPGIGKTSIAKAI AGSTEYKFRQLNAVTNTKKDMQMVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGK IILIGATTSNPYHAINPAIRSRVQIFELYPLDEKDVYQALTRALNDDQNGLKSYQPKIDE DALKYFSTQSHGDVRSALNALELAVLSAKVSNNQRHVTLEDAKDCLQKGAFISDKDGDMH YDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPSAGQRTLA AIQSAERLGLPEARIPLSQAVIELSLSPKSNSAIKAIDSALSDIRKGKVGQIPNHLRDGH YQGAKDLGRSIGYKYPHDYENGYIKQQYLPDALKNKIYYEPKTTSKSEQQFKIVYDNLNH KN >gi|312979644|gb|ACRM01000021.1| GENE 73 81237 - 81659 504 140 aa, chain + ## HITS:1 COG:SA1453 KEGG:ns NR:ns ## COG: SA1453 COG1959 # Protein_GI_number: 15927206 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 140 1 140 140 249 87.0 1e-66 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENHLSDLYLEQLVGPLRNAGLIRSIRG AKGGYQLRVPSEEISAGDIIRLLEGPITIVESIDSEPPAQKELWLRMRDAVREVLDNTTL KYLADFVESDNDLDGYMFYI >gi|312979644|gb|ACRM01000021.1| GENE 74 81769 - 81912 271 47 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAFMDKAKDAAEKFKNSDNEQVNKVKDKINEYTGGNNDSKDDKKDNK >gi|312979644|gb|ACRM01000021.1| GENE 75 82011 - 83015 1512 334 aa, chain - ## HITS:1 COG:SA1451 KEGG:ns NR:ns ## COG: SA1451 COG2141 # Protein_GI_number: 15927203 # Func_class: C Energy production and conversion # Function: Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases # Organism: Staphylococcus aureus N315 # 4 334 3 333 337 526 77.0 1e-149 MSDIKFSALNLVPIREGQTDKDAINDMVALAQKLDELDYERYWIAEHHNAPNLVSSATSL LIQHTLEHTHNIKVGSGGIMLPNHAPLVVAEQFGTLETIYPNRVDLGLGRAPGTDMMTAS ALRRDQHNGVYAFPEEVEQLQTYFGPGNKQAYVRAYPAVDKNVPLYILGSSTDSAHLAAR KGLPYVFAGHFAPQQMKEAIEIYHDLFEPSEALDKPYMIVCLNAIVTETDKEAEYLASSL AQVFISIARGRMQPVQPPTDDLNGLLTPREYEMAKQRFDDSLIGSEETVKAKLEAFLEEY GDIDEIMAVSYIYDQDRQFESYERFKRVIQKLNK >gi|312979644|gb|ACRM01000021.1| GENE 76 83215 - 84354 1257 379 aa, chain + ## HITS:1 COG:SA1450 KEGG:ns NR:ns ## COG: SA1450 COG1104 # Protein_GI_number: 15927202 # Func_class: E Amino acid transport and metabolism # Function: Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes # Organism: Staphylococcus aureus N315 # 1 379 1 379 380 582 77.0 1e-166 MEVYADYAATTPVKPEVIEAMMDMYQSHYGNPSSIHSVGRDARRYLDESRRNVAQLLGAK PSEIIFTSGATESNNTAIKGLVYANEHLGNHIITTKIEHHSVLHVFEQLEKEGYEVTYLD VDDTGRVDLDQLEESLTDDTILVSIMFVNNEVGTVEPIYDIENIVSNSNALLHVDAVQAI SHLDIKFSEFNIDTMSITAHKFGGPKGVGILLVKNNTPIEYSQLGGEQETKRRAGTESVP QIVGMTKALEIATKNRDQNNIHLMQLKELFLVSLQERAIPFEVNGSMVETTGHILNLYLP FIDVETMLTLLDLANIYVSSGSACTAGSTTPSHVLAAMYEDEDRAKHSVRFSFNEITTEQ DIKYIVAEIHKIYHKFKEE >gi|312979644|gb|ACRM01000021.1| GENE 77 84358 - 85470 1335 370 aa, chain + ## HITS:1 COG:SA1449 KEGG:ns NR:ns ## COG: SA1449 COG0482 # Protein_GI_number: 15927201 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain # Organism: Staphylococcus aureus N315 # 1 370 1 372 372 684 88.0 0 MSNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYNDVIA VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA DYVATGHYARIHRHEDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKKDVRK IAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLPAQSGEMRTLNGKKMGIHSGLMYYTI GQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDASFVNPVDLENGF ECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQAVVFYNGEVCLGGATIDDVY KTTGQLSYVV >gi|312979644|gb|ACRM01000021.1| GENE 78 85557 - 86228 683 223 aa, chain + ## HITS:1 COG:SA1448 KEGG:ns NR:ns ## COG: SA1448 COG0457 # Protein_GI_number: 15927200 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Staphylococcus aureus N315 # 1 222 1 222 222 274 67.0 8e-74 MIEQETIYQWMNNGNYEEAIKALFNNIEENPNIIENYINAGIVLADVGEIEKAERFFQKA ITLDDKNGAVYYNLANLYYEQSRFQEAIKLYQRALKYNMNPVDANYMIGMSFSQLDAQRE ALPFFMTAAELDQTLDTEVQFQYGLTLCHLEMFQEAIKQLNYVLSINSNHVDALYNLGLA TYMETEDADKAIQYFDKAIQIDPKHLLSQHAKQTFKSLKNEEE >gi|312979644|gb|ACRM01000021.1| GENE 79 86230 - 88653 2749 807 aa, chain + ## HITS:1 COG:SA1447 KEGG:ns NR:ns ## COG: SA1447 COG0507 # Protein_GI_number: 15927199 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Staphylococcus aureus N315 # 1 806 1 824 825 1204 77.0 0 MSNPTLFDYSMVKGTVDTILFQNKDNFYTVLKVDSIETNESFDNLPTVVGFFPNIVEGDV YTFKGQIVQHPRYGKQLKAETFEKELPQTKDAIISYLSSDLFKGIGKKTAQNIVNTLGEN AINDILTDPSVLENVPSLAKTKQKQIVEQISANQESEKIMIRLHDLGFGPKLSMAIYQFY QSETLKVLENNPYQLVYDVKGIGFQKADTLARNNGIAYNDSERLKAGLLYTLEEECIKQG HTYLDENAVLEITEDMLSDKHLDETIEQQQLKHVLQTLFEEKKIILENSHVAIPSLYYSE LKSVQNLYRINTYKNHFKIIEQSDLQIHIGELEDQNNVNYAKSQQEALETAMNSKIMLLT GGPGTGKTTVIKGIVELYAEIHGLSLKYSDYQEDDYPIVLAAPTGRASKRLQESTGLEAM TIHRLIGWNQDTQPEDILENEIKAKLIIIDEMSMVDSWLFHQFLSAVPLDAQIILVGDED QLPSVGPGQVFKDLIESKAFPRVNLTEVYRQQDGSSIIDLAHRMKHHESIDITKRYHDRS FIHCNVEQIPTVVEKVVSSAVNKGYDMSDIQVLAPMYKGSAGIKRLNQVLQNILNPKEKD TREIEFGDITFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFWAKENALNKDVLIIDFEGNE ITFTRQDLLELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKQSLVL LGDPKAFDIALNTQGQERHTQLKTLIINYFGMSQVNIDVEENDEQINIDDKDDNNAVEHI TLSEETIYQINPMINMGNVSPYDFVEH >gi|312979644|gb|ACRM01000021.1| GENE 80 88933 - 91563 3097 876 aa, chain + ## HITS:1 COG:SA1446 KEGG:ns NR:ns ## COG: SA1446 COG0013 # Protein_GI_number: 15927198 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Alanyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 876 1 876 876 1465 84.0 0 MKKLKASDIRQKYIDFFVEKGHMVEPSAPLVPIDDDSLLWINSGVATLKKYFDGRETPKK PRIVNSQKAIRTNDIENVGFTARHHTFFEMLGNFSIGDYFKKEAIEFAWEFLTSDKWMGM EPEKLYVTIHPEDVEAYRLWHENIGLEESRIIRIEGNFWDIGEGPSGPNTEIFYDRGEAY GQNDPAEEMYPGGENERYLEVWNLVFSEYNHNKDHTYTPLPNKNIDTGMGLERMTSISQN VRTNYETDLFMPIIEEVEHISGKKYLENNEQDVAFKVIADHIRTISFAISDGALPANEGR GYVLRRLLRRAVRFSQTLGINEPFMYKLVDIVADIMEPYYPNVKEKSDFIKRVIKSEEER FHETLQEGVSILNQLITQAKESTHQINGSDAFKLYDTYGFPIELTEELASQEGITVDMAT FEAEMEQQRTRAREARQSSQSMQVQSDVLKNINTKSQFVGYETTDYQTILTDLIYNGKTV TSAEAGETVYFILKETPFYAVSGGQVADKGTVGNDQFEIAVQEVTKAPNGQNLHQGIVQF GQVSVNSHVDATVNKEERKDIQKNHSATHLLHAALKEILGEHVNQAGSLVESERLRFDFS HFGPMTKEEIDQVERRVNEEIWRGISVHIQEMPIQEAKEMGAMALFGEKYGDIVRVVNMA PFSIELCGGIHVDNTAEIGLFKIVSESGTGAGVRRIEALTGKAAFLYFEDIQNKFNSVKE QLKVKSDKQVYDKVVQIQENEKQLNKQLEQRNKEITSLKMGNIEDQVEMINGFKVLATEV EVSNPKEIRQTMDDFKSKKQDTIIILAGHVGEKVSLIAAVPKELTSQVKAGDIIKNMAPI VGGKGGGRPDMAQGGGTQPENISESLRFIKDYIKNL >gi|312979644|gb|ACRM01000021.1| GENE 81 91628 - 91888 395 86 aa, chain + ## HITS:1 COG:SA1445 KEGG:ns NR:ns ## COG: SA1445 COG4472 # Protein_GI_number: 15927197 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 86 1 86 86 126 82.0 1e-29 MENIDKTMKFDYDEIPKENVQTVLKNVHQTLEERGYNAVNQIVGYLLSGDPAYIPRQNDA RNQIRHIDRDVIMEELVSNYLKENNK >gi|312979644|gb|ACRM01000021.1| GENE 82 91889 - 92317 516 142 aa, chain + ## HITS:1 COG:SA1444 KEGG:ns NR:ns ## COG: SA1444 COG0816 # Protein_GI_number: 15927196 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) # Organism: Staphylococcus aureus N315 # 20 142 1 123 123 201 85.0 5e-52 MLRHKILGLDVGSRTVGIAISDLMGWTAQGLDTLRINEENEEFGIDRLVSIIKDNNVGSV VIGLPKNMNNSIGFRGEASLKYKELLQEALPNIEIIMWDERLSTMAAERSLLEADVSRQK RKKVIDKMAAVFILQGYLDSIQ >gi|312979644|gb|ACRM01000021.1| GENE 83 92332 - 92640 585 102 aa, chain + ## HITS:1 COG:SA1443 KEGG:ns NR:ns ## COG: SA1443 COG3906 # Protein_GI_number: 15927195 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 1 102 102 130 90.0 8e-31 MTEHNHNTELNISNEEELLTLFDENGNEVLYRKMLEFYHPEFKKEYVILAEEGAQSDDDD MIELIPMINEPDESGDGGKLVPIETDEEWDMIEEVVNTNMEE >gi|312979644|gb|ACRM01000021.1| GENE 84 92900 - 93535 473 211 aa, chain + ## HITS:1 COG:SA1442 KEGG:ns NR:ns ## COG: SA1442 COG4122 # Protein_GI_number: 15927194 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Staphylococcus aureus N315 # 4 211 5 212 212 280 71.0 2e-75 MESNQSYLLNLHEQLNNNIEELRFYAEEHAVPIVDKLTLDMIKQLIRIHHSKNILEIGTA IGYSSMQFASVSPDISITTIERNENMIKQAKFNFKKFEYENQIRLIEGDALSQYDKVSNH LYDMIFIDAAKAQSQKFFEYYTPLLKNGGLVITDNVLYHGFVSDIDIVRSRNVKQMVKKV QKYNTWLMKQKNYKTNFLNMDDGLAISIKGE >gi|312979644|gb|ACRM01000021.1| GENE 85 93538 - 94461 1089 307 aa, chain + ## HITS:1 COG:SA1441 KEGG:ns NR:ns ## COG: SA1441 COG0826 # Protein_GI_number: 15927193 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Staphylococcus aureus N315 # 1 307 1 307 307 519 83.0 1e-147 MTELLVTPKSLNHMKTLIELGADAFVIGEQKFGLRLPGEFNRENVRKAVNLAHEHDKKVY VAVNGIFHNYHLNALENYIEFLHEIRVDRIIFGDPAVVMYVKKQNNPIPLNWDAETIVTN YFQCNYWGEKGAKRAVLARELNLDEILNIKKHAKVEIEVQVHGMTCMFQSKRMLLGNYYT FQDRQMKIQRSENEQDLLLYDEERENKYPVFEDYNGTHIMSPNDICLIEELEPFFEANID SFKIDGILHSESYINTVTAQYREAIDLYHEDPEAYEDEKFMLIDPIEEIQPEHRPFDEGF LYKQTVY >gi|312979644|gb|ACRM01000021.1| GENE 86 94475 - 95743 1379 422 aa, chain + ## HITS:1 COG:SA1440 KEGG:ns NR:ns ## COG: SA1440 COG0826 # Protein_GI_number: 15927192 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Collagenase and related proteases # Organism: Staphylococcus aureus N315 # 1 422 1 422 422 783 89.0 0 MKTLNEIEVNAKRKIKKPELLAPAGNLEKLKIAVHYGADAVFLGGQEYGLRSNADNFTME EIKEGVEFANRYGAKIYVTTNIIAHDENIDGLEDYLRQLEATGATGIIVADPLIIETCKK VAPKLEIHLSTQQSLSNYKAVEYWKEEGLDRVVLARETGAMEMKEMKDNVDIEIEAFIHG AMCIAYSGRCTLSNHMTARDSNRGGCCQSCRWDYDLLAVDEEGELDLFYQDGEVVPFAMS PKDLKLIESIPQMMDIGIDSLKIEGRMKSIHYIATVVSVYRKVIDAYAEDPDNFKIKPEW LIELDKCANRDTAPAFFEGTPGYEEQMFGVQQNKKSPYDFCGLVLDYDETTHIATIQQRN HFKPGQEIEFFGPEIESFKQVIDVIYDEEGNHLDAARHPLQIVQIKVNHPIYPNNMMRKE IG >gi|312979644|gb|ACRM01000021.1| GENE 87 95743 - 96366 627 207 aa, chain + ## HITS:1 COG:SA1439 KEGG:ns NR:ns ## COG: SA1439 COG0572 # Protein_GI_number: 15927191 # Func_class: F Nucleotide transport and metabolism # Function: Uridine kinase # Organism: Staphylococcus aureus N315 # 17 207 17 207 207 327 89.0 1e-89 MTQTTIIGIAGGSGSGKTTVTNEIMKNLEGHSVALLAQDYYYKDQSHLTFEERLETNYDH PFAFDNDLLISNLKDLRNGQSVEVPTYDYKNHTRSDETIAFEPKDVIIVEGIFALENKTL CDMMDVKIYVDTDADLRILRRLVRDTKERGRSMESVINQYLNVVRPMHNQFIEPTKKYAD IIIPEGGSNKVAIDIMTTKIQTLVGKH >gi|312979644|gb|ACRM01000021.1| GENE 88 96423 - 96899 696 158 aa, chain + ## HITS:1 COG:SA1438 KEGG:ns NR:ns ## COG: SA1438 COG0782 # Protein_GI_number: 15927190 # Func_class: K Transcription # Function: Transcription elongation factor # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 233 91.0 1e-61 MENQKQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGF IEQDIQRIEHMLRYALIIEDNGDNNVIQIGKTVTFVELPGDEEESYQIVGSAEADAFKGK ISNESPMAKALIGKNLNDEVRVPLPNGGEMKVKIVDIK Prediction of potential genes in microbial genomes Time: Sun May 29 09:25:46 2011 Seq name: gi|312979643|gb|ACRM01000022.1| Staphylococcus hominis subsp. hominis C80 cont1.22, whole genome shotgun sequence Length of sequence - 248183 bp Number of predicted genes - 257, with homology - 249 Number of transcription units - 113, operones - 58 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 12 - 71 12.3 1 1 Op 1 21/0.000 + CDS 318 - 1046 765 ## COG2049 Allophanate hydrolase subunit 1 2 1 Op 2 1/0.914 + CDS 1036 - 2040 1110 ## COG1984 Allophanate hydrolase subunit 2 3 1 Op 3 27/0.000 + CDS 2043 - 2483 506 ## COG0511 Biotin carboxyl carrier protein 4 1 Op 4 1/0.914 + CDS 2497 - 3858 1534 ## COG0439 Biotin carboxylase 5 1 Op 5 7/0.029 + CDS 3858 - 4610 822 ## COG1540 Uncharacterized proteins, homologs of lactam utilization protein B 6 1 Op 6 . + CDS 4623 - 5861 1478 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 5900 - 5940 2.2 + Prom 5865 - 5924 7.7 7 2 Op 1 1/0.914 + CDS 6038 - 6724 827 ## COG0775 Nucleoside phosphorylase 8 2 Op 2 6/0.029 + CDS 6752 - 7279 678 ## COG2179 Predicted hydrolase of the HAD superfamily 9 2 Op 3 4/0.114 + CDS 7280 - 8380 1180 ## COG1161 Predicted GTPases 10 2 Op 4 4/0.114 + CDS 8393 - 9199 1000 ## COG0169 Shikimate 5-dehydrogenase 11 2 Op 5 7/0.029 + CDS 9206 - 9496 297 ## PROTEIN SUPPORTED gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein 12 2 Op 6 9/0.000 + CDS 9501 - 10070 561 ## COG1057 Nicotinic acid mononucleotide adenylyltransferase 13 2 Op 7 6/0.029 + CDS 10060 - 10644 789 ## COG1713 Predicted HD superfamily hydrolase involved in NAD metabolism 14 2 Op 8 6/0.029 + CDS 10645 - 10998 475 ## COG0799 Uncharacterized homolog of plant Iojap protein 15 2 Op 9 2/0.314 + CDS 11000 - 11731 719 ## COG0500 SAM-dependent methyltransferases 16 2 Op 10 4/0.114 + CDS 11784 - 12446 665 ## COG1555 DNA uptake protein and related DNA-binding proteins 17 2 Op 11 4/0.114 + CDS 12513 - 12977 456 ## COG2131 Deoxycytidylate deaminase 18 2 Op 12 4/0.114 + CDS 12971 - 15160 1164 ## COG2333 Predicted hydrolase (metallo-beta-lactamase superfamily) 19 2 Op 13 . + CDS 15231 - 16205 866 ## COG1466 DNA polymerase III, delta subunit + Term 16207 - 16257 3.9 - Term 16203 - 16235 2.5 20 3 Tu 1 . - CDS 16247 - 16498 401 ## PROTEIN SUPPORTED gi|228475953|ref|ZP_04060661.1| ribosomal protein S20 - Prom 16624 - 16683 10.8 + Prom 16617 - 16676 9.0 21 4 Op 1 4/0.114 + CDS 16829 - 18652 2308 ## COG0481 Membrane GTPase LepA + Term 18663 - 18710 3.2 + Prom 18655 - 18714 1.6 22 4 Op 2 5/0.029 + CDS 18735 - 19856 1033 ## COG0635 Coproporphyrinogen III oxidase and related Fe-S oxidoreductases + Prom 19863 - 19922 8.2 23 5 Op 1 21/0.000 + CDS 19959 - 20936 773 ## COG1420 Transcriptional regulator of heat shock gene 24 5 Op 2 29/0.000 + CDS 20968 - 21591 943 ## COG0576 Molecular chaperone GrpE (heat shock protein) 25 5 Op 3 31/0.000 + CDS 21634 - 23475 2570 ## COG0443 Molecular chaperone + Term 23522 - 23578 10.1 + Prom 23521 - 23580 6.8 26 6 Op 1 5/0.029 + CDS 23629 - 24759 1491 ## COG0484 DnaJ-class molecular chaperone with C-terminal Zn finger domain 27 6 Op 2 9/0.000 + CDS 24762 - 25700 1638 ## PROTEIN SUPPORTED gi|228476084|ref|ZP_04060792.1| ribosomal protein L11 methyltransferase 28 6 Op 3 5/0.029 + CDS 25702 - 26454 540 ## COG1385 Uncharacterized protein conserved in bacteria 29 6 Op 4 1/0.914 + CDS 26460 - 27806 1823 ## PROTEIN SUPPORTED gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 + Prom 27809 - 27868 11.2 30 7 Tu 1 1/0.914 + CDS 27939 - 28115 282 ## PROTEIN SUPPORTED gi|228476120|ref|ZP_04060828.1| ribosomal protein S21 + Term 28117 - 28167 -0.5 + Prom 28151 - 28210 13.0 31 8 Op 1 3/0.229 + CDS 28265 - 28972 567 ## COG1030 Membrane-bound serine protease (ClpP class) 32 8 Op 2 . + CDS 28987 - 29973 1457 ## COG4864 Uncharacterized protein conserved in bacteria 33 8 Op 3 . + CDS 29990 - 30685 868 ## SH1344 hypothetical protein + Term 30737 - 30780 7.1 + Prom 30852 - 30911 7.2 34 9 Op 1 17/0.000 + CDS 30960 - 31907 1178 ## COG1702 Phosphate starvation-inducible protein PhoH, predicted ATPase 35 9 Op 2 11/0.000 + CDS 31908 - 32369 774 ## COG0319 Predicted metal-dependent hydrolase + Prom 32419 - 32478 7.0 36 9 Op 3 3/0.229 + CDS 32533 - 32712 95 ## COG0818 Diacylglycerol kinase 37 9 Op 4 6/0.029 + CDS 32725 - 33129 495 ## COG0295 Cytidine deaminase 38 9 Op 5 16/0.000 + CDS 33130 - 34029 1078 ## COG1159 GTPase 39 9 Op 6 . + CDS 34063 - 34812 609 ## COG1381 Recombinational DNA repair protein (RecF pathway) + Term 34838 - 34888 9.2 - Term 34824 - 34876 11.2 40 10 Tu 1 . - CDS 34885 - 36276 1722 ## COG0423 Glycyl-tRNA synthetase (class II) - Prom 36499 - 36558 8.7 + Prom 36641 - 36700 5.3 41 11 Op 1 4/0.114 + CDS 36740 - 37231 517 ## COG0517 FOG: CBS domain 42 11 Op 2 1/0.914 + CDS 37242 - 38054 771 ## COG1806 Uncharacterized protein conserved in bacteria 43 11 Op 3 31/0.000 + CDS 38118 - 39926 1721 ## COG0358 DNA primase (bacterial type) + Term 39987 - 40030 0.7 + Prom 40086 - 40145 8.4 44 11 Op 4 5/0.029 + CDS 40200 - 41306 1447 ## COG0568 DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) + Term 41357 - 41398 4.2 45 12 Op 1 9/0.000 + CDS 41410 - 42099 824 ## COG2384 Predicted SAM-dependent methyltransferase 46 12 Op 2 2/0.314 + CDS 42089 - 43192 1244 ## COG0327 Uncharacterized conserved protein 47 12 Op 3 4/0.114 + CDS 43217 - 44563 1462 ## COG0513 Superfamily II DNA and RNA helicases 48 12 Op 4 1/0.914 + CDS 44573 - 45463 1093 ## COG0648 Endonuclease IV + Term 45470 - 45526 -0.7 + Prom 45505 - 45564 5.5 49 13 Op 1 42/0.000 + CDS 45584 - 46360 261 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 50 13 Op 2 5/0.029 + CDS 46417 - 47262 846 ## COG1108 ABC-type Mn2+/Zn2+ transport systems, permease components 51 13 Op 3 1/0.914 + CDS 47266 - 47688 436 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 47702 - 47737 3.4 + Prom 47722 - 47781 7.4 52 14 Tu 1 2/0.314 + CDS 47920 - 48522 637 ## PROTEIN SUPPORTED gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent + Term 48545 - 48581 5.0 + Prom 48561 - 48620 11.4 53 15 Op 1 . + CDS 48652 - 50697 2118 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 + Prom 50729 - 50788 5.7 54 15 Op 2 . + CDS 50820 - 50969 267 ## PROTEIN SUPPORTED gi|228476134|ref|ZP_04060842.1| ribosomal protein L33 + Term 50978 - 51032 16.0 + Prom 51042 - 51101 11.2 55 16 Op 1 4/0.114 + CDS 51180 - 51731 610 ## COG0212 5-formyltetrahydrofolate cyclo-ligase 56 16 Op 2 3/0.229 + CDS 51731 - 53188 900 ## COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid) 57 16 Op 3 5/0.029 + CDS 53172 - 53375 62 ## COG4483 Uncharacterized protein conserved in bacteria 58 16 Op 4 1/0.914 + CDS 53372 - 54358 638 ## PROTEIN SUPPORTED gi|116517028|ref|YP_816079.1| glucokinase 59 16 Op 5 1/0.914 + CDS 54358 - 54681 539 ## COG0011 Uncharacterized conserved protein 60 16 Op 6 1/0.914 + CDS 54683 - 55309 888 ## COG0491 Zn-dependent hydrolases, including glyoxylases 61 16 Op 7 24/0.000 + CDS 55359 - 56333 780 ## COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 62 16 Op 8 6/0.029 + CDS 56305 - 57369 548 ## COG1459 Type II secretory pathway, component PulF 63 16 Op 9 6/0.029 + CDS 57388 - 57699 302 ## COG4537 Competence protein ComGC 64 16 Op 10 . + CDS 57743 - 58123 221 ## COG2165 Type II secretory pathway, pseudopilin PulG 65 16 Op 11 . + CDS 58089 - 58397 205 ## SH1376 hypothetical protein 66 16 Op 12 . + CDS 58315 - 58812 220 ## SH1377 hypothetical protein 67 16 Op 13 . + CDS 58814 - 58975 59 ## 68 16 Op 14 1/0.914 + CDS 58977 - 59486 462 ## COG0703 Shikimate kinase + Term 59628 - 59662 4.0 + Prom 59596 - 59655 6.4 69 17 Op 1 4/0.114 + CDS 59678 - 60769 1460 ## COG0404 Glycine cleavage system T protein (aminomethyltransferase) 70 17 Op 2 12/0.000 + CDS 60786 - 62138 1652 ## COG0403 Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain 71 17 Op 3 . + CDS 62125 - 63603 1756 ## COG1003 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain + Term 63635 - 63697 14.5 - Term 63633 - 63676 10.5 72 18 Tu 1 . - CDS 63687 - 64019 411 ## COG0607 Rhodanese-related sulfurtransferase - Prom 64098 - 64157 9.4 + Prom 64128 - 64187 8.6 73 19 Tu 1 . + CDS 64224 - 65054 1042 ## COG0095 Lipoate-protein ligase A + Term 65063 - 65114 12.2 - Term 65051 - 65102 12.2 74 20 Op 1 . - CDS 65106 - 65321 80 ## SH1384 hypothetical protein 75 20 Op 2 . - CDS 65338 - 65919 557 ## SH1385 hypothetical protein - Prom 66107 - 66166 9.4 + Prom 65932 - 65991 8.7 76 21 Op 1 10/0.000 + CDS 66020 - 67078 1273 ## COG0006 Xaa-Pro aminopeptidase 77 21 Op 2 8/0.000 + CDS 67106 - 67663 824 ## COG0231 Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) + Term 67692 - 67737 5.4 + Prom 67749 - 67808 9.2 78 22 Op 1 27/0.000 + CDS 67922 - 68398 707 ## COG0511 Biotin carboxyl carrier protein 79 22 Op 2 4/0.114 + CDS 68398 - 69753 1627 ## COG0439 Biotin carboxylase 80 22 Op 3 10/0.000 + CDS 69766 - 70125 397 ## COG1302 Uncharacterized protein conserved in bacteria 81 22 Op 4 1/0.914 + CDS 70158 - 70544 395 ## COG0781 Transcription termination factor 82 22 Op 5 14/0.000 + CDS 70565 - 71902 1253 ## COG1570 Exonuclease VII, large subunit 83 22 Op 6 22/0.000 + CDS 71895 - 72125 322 ## COG1722 Exonuclease VII small subunit 84 22 Op 7 1/0.914 + CDS 72103 - 72984 926 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 73008 - 73066 8.6 + Prom 73080 - 73139 9.6 85 23 Op 1 8/0.000 + CDS 73246 - 73698 440 ## COG1438 Arginine repressor 86 23 Op 2 1/0.914 + CDS 73714 - 75387 1874 ## COG0497 ATPase involved in DNA repair + Prom 75449 - 75508 10.0 87 24 Op 1 5/0.029 + CDS 75530 - 76954 698 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 88 24 Op 2 28/0.000 + CDS 76969 - 77970 1314 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit 89 24 Op 3 24/0.000 + CDS 77963 - 78946 1187 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 90 24 Op 4 . + CDS 78959 - 80236 1443 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Prom 80245 - 80304 8.5 91 25 Op 1 . + CDS 80334 - 80771 619 ## SH1401 hypothetical protein 92 25 Op 2 1/0.914 + CDS 80784 - 81761 1054 ## COG4129 Predicted membrane protein + Term 81787 - 81843 5.3 + Prom 82017 - 82076 12.0 93 26 Op 1 2/0.314 + CDS 82176 - 83300 1516 ## COG2195 Di- and tripeptidases 94 26 Op 2 . + CDS 83378 - 84784 1772 ## COG0362 6-phosphogluconate dehydrogenase + Term 84793 - 84848 7.0 95 27 Tu 1 . + CDS 85147 - 86793 1688 ## COG0366 Glycosidases + Term 86801 - 86854 15.2 - Term 86788 - 86841 15.2 96 28 Op 1 . - CDS 86847 - 87713 825 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 87743 - 87802 13.1 - Term 87825 - 87886 0.6 97 28 Op 2 . - CDS 87925 - 89409 1534 ## COG0364 Glucose-6-phosphate 1-dehydrogenase - Prom 89545 - 89604 10.5 + Prom 89524 - 89583 9.8 98 29 Tu 1 . + CDS 89655 - 90575 964 ## COG1234 Metal-dependent hydrolases of the beta-lactamase superfamily III + Term 90619 - 90669 1.2 - Term 90605 - 90655 -0.8 99 30 Tu 1 . - CDS 90664 - 91479 949 ## COG0345 Pyrroline-5-carboxylate reductase - Prom 91509 - 91568 9.4 + Prom 91348 - 91407 9.5 100 31 Tu 1 . + CDS 91584 - 92342 684 ## COG0300 Short-chain dehydrogenases of various substrate specificities + Term 92358 - 92401 1.2 - Term 92345 - 92388 4.2 101 32 Tu 1 . - CDS 92434 - 93342 1012 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 93374 - 93433 7.7 + Prom 93313 - 93372 7.0 102 33 Tu 1 . + CDS 93424 - 93966 564 ## COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes + Prom 93984 - 94043 10.8 103 34 Op 1 . + CDS 94067 - 94513 488 ## COG0735 Fe2+/Zn2+ uptake regulation proteins + Term 94612 - 94670 7.3 + Prom 94593 - 94652 5.7 104 34 Op 2 . + CDS 94681 - 95568 908 ## COG4974 Site-specific recombinase XerD + Term 95571 - 95624 14.1 - Term 95539 - 95574 -0.6 105 35 Tu 1 . - CDS 95594 - 96097 336 ## COG1547 Uncharacterized conserved protein - Prom 96147 - 96206 7.2 + Prom 96091 - 96150 11.1 106 36 Op 1 21/0.000 + CDS 96196 - 96927 862 ## COG1354 Uncharacterized conserved protein 107 36 Op 2 12/0.000 + CDS 96914 - 97453 599 ## COG1386 Predicted transcriptional regulator containing the HTH domain 108 36 Op 3 2/0.314 + CDS 97455 - 98192 825 ## COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases + Prom 98236 - 98295 8.7 109 37 Op 1 40/0.000 + CDS 98400 - 99125 926 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 110 37 Op 2 . + CDS 99106 - 100875 1888 ## COG0642 Signal transduction histidine kinase + Term 100923 - 100972 9.2 + Prom 101044 - 101103 9.6 111 38 Tu 1 . + CDS 101313 - 101858 579 ## COG3601 Predicted membrane protein + Term 101862 - 101917 15.2 - Term 101848 - 101905 15.2 112 39 Tu 1 . - CDS 101942 - 102190 460 ## COG1141 Ferredoxin - Prom 102316 - 102375 12.2 + Prom 102195 - 102254 7.7 113 40 Op 1 4/0.114 + CDS 102287 - 103252 888 ## COG4955 Uncharacterized protein conserved in bacteria 114 40 Op 2 . + CDS 103233 - 104612 1289 ## COG0514 Superfamily II DNA helicase + Prom 104665 - 104724 4.4 115 41 Tu 1 . + CDS 104759 - 106234 1943 ## SH1431 cell surface elastin binding protein EbpS + Term 106248 - 106295 10.5 + Prom 106303 - 106362 8.9 116 42 Tu 1 . + CDS 106385 - 107371 1238 ## COG0492 Thioredoxin reductase + Term 107384 - 107450 16.7 - Term 107381 - 107429 12.1 117 43 Tu 1 . - CDS 107434 - 108402 961 ## COG0252 L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D - Prom 108435 - 108494 9.1 + Prom 108373 - 108432 7.2 118 44 Tu 1 . + CDS 108478 - 109134 271 ## PROTEIN SUPPORTED gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 + Prom 109169 - 109228 7.5 119 45 Tu 1 . + CDS 109441 - 110622 1968 ## PROTEIN SUPPORTED gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog + Term 110654 - 110708 10.4 + Prom 110690 - 110749 11.1 120 46 Op 1 5/0.029 + CDS 110808 - 112118 1492 ## COG1160 Predicted GTPases 121 46 Op 2 1/0.914 + CDS 112133 - 113131 1195 ## COG0240 Glycerol-3-phosphate dehydrogenase + Prom 113193 - 113252 7.0 122 47 Tu 1 . + CDS 113300 - 113572 180 ## PROTEIN SUPPORTED gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 + Term 113579 - 113617 7.2 + Prom 113595 - 113654 13.5 123 48 Op 1 . + CDS 113760 - 114341 570 ## SH1442 hypothetical protein 124 48 Op 2 3/0.229 + CDS 114341 - 115042 410 ## PROTEIN SUPPORTED gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 125 48 Op 3 4/0.114 + CDS 115072 - 116028 943 ## COG0142 Geranylgeranyl pyrophosphate synthase + Term 116068 - 116113 3.0 + Prom 116059 - 116118 3.5 126 49 Tu 1 . + CDS 116148 - 116600 544 ## COG0105 Nucleoside diphosphate kinase + Term 116659 - 116721 15.2 + Prom 116659 - 116718 9.9 127 50 Op 1 7/0.029 + CDS 116830 - 117996 1568 ## COG0082 Chorismate synthase 128 50 Op 2 3/0.229 + CDS 118032 - 119096 1006 ## COG0337 3-dehydroquinate synthetase 129 50 Op 3 3/0.229 + CDS 119107 - 120405 1328 ## COG0128 5-enolpyruvylshikimate-3-phosphate synthase 130 50 Op 4 4/0.114 + CDS 120412 - 121656 1652 ## COG0457 FOG: TPR repeat 131 50 Op 5 2/0.314 + CDS 121671 - 122210 267 ## COG5582 Uncharacterized conserved protein 132 50 Op 6 2/0.314 + CDS 122236 - 122853 462 ## COG4347 Predicted membrane protein 133 50 Op 7 1/0.914 + CDS 122881 - 123579 875 ## COG2738 Predicted Zn-dependent protease + Term 123650 - 123700 12.1 + Prom 123671 - 123730 10.8 134 51 Op 1 1/0.914 + CDS 123781 - 124098 432 ## COG1694 Predicted pyrophosphatase 135 51 Op 2 3/0.229 + CDS 124121 - 125239 1286 ## COG0438 Glycosyltransferase 136 51 Op 3 4/0.114 + CDS 125254 - 126456 1314 ## COG0617 tRNA nucleotidyltransferase/poly(A) polymerase 137 51 Op 4 1/0.914 + CDS 126443 - 127414 943 ## COG0340 Biotin-(acetyl-CoA carboxylase) ligase 138 51 Op 5 1/0.914 + CDS 127444 - 130161 2399 ## COG1199 Rad3-related DNA helicases + Prom 130163 - 130222 7.3 139 51 Op 6 4/0.114 + CDS 130258 - 131550 1878 ## COG0017 Aspartyl/asparaginyl-tRNA synthetases + Term 131578 - 131629 6.0 + Prom 131552 - 131611 1.7 140 52 Op 1 6/0.029 + CDS 131647 - 132333 752 ## COG3935 Putative primosome component and related proteins 141 52 Op 2 . + CDS 132323 - 132994 186 ## PROTEIN SUPPORTED gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 142 52 Op 3 . + CDS 132987 - 133322 351 ## SH1461 hypothetical protein + Term 133330 - 133372 6.1 - Term 133362 - 133403 8.1 143 53 Op 1 7/0.029 - CDS 133416 - 135809 2395 ## COG0744 Membrane carboxypeptidase (penicillin-binding protein) 144 53 Op 2 . - CDS 135806 - 136435 312 ## COG3331 Penicillin-binding protein-related factor A, putative recombinase - Prom 136513 - 136572 5.6 - Term 136500 - 136540 3.4 145 54 Tu 1 . - CDS 136576 - 136689 116 ## - Prom 136817 - 136876 6.6 + Prom 136604 - 136663 12.8 146 55 Op 1 . + CDS 136694 - 137047 365 ## SLGD_01457 hypothetical protein 147 55 Op 2 6/0.029 + CDS 137044 - 137607 628 ## COG4474 Uncharacterized protein conserved in bacteria 148 55 Op 3 . + CDS 137619 - 137957 411 ## COG3599 Cell division initiation protein + Term 138001 - 138047 -0.9 + Prom 138019 - 138078 8.1 149 56 Tu 1 . + CDS 138133 - 138216 69 ## + Term 138342 - 138386 1.6 + Prom 138502 - 138561 12.1 150 57 Op 1 . + CDS 138598 - 139734 1613 ## COG0116 Predicted N6-adenine-specific DNA methylase + Term 139819 - 139864 1.1 + Prom 139758 - 139817 11.9 151 57 Op 2 . + CDS 139912 - 140550 924 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases + Term 140630 - 140690 -0.6 + Prom 140630 - 140689 12.6 152 58 Op 1 1/0.914 + CDS 140714 - 144157 3614 ## COG0699 Predicted GTPases (dynamin-related) 153 58 Op 2 . + CDS 144174 - 145058 851 ## COG0258 5'-3' exonuclease (including N-terminal domain of PolI) + Term 145063 - 145129 16.0 - Term 145053 - 145118 19.3 154 59 Op 1 2/0.314 - CDS 145122 - 145523 455 ## COG0328 Ribonuclease HI - Prom 145559 - 145618 4.3 - Term 145567 - 145609 8.1 155 59 Op 2 . - CDS 145623 - 146327 916 ## COG1738 Uncharacterized conserved protein - Prom 146482 - 146541 10.5 + Prom 146442 - 146501 10.5 156 60 Op 1 . + CDS 146526 - 146720 112 ## SH1475 hypothetical protein 157 60 Op 2 . + CDS 146732 - 146980 339 ## SERP1007 hypothetical protein 158 60 Op 3 . + CDS 146998 - 148113 1332 ## COG1413 FOG: HEAT repeat 159 60 Op 4 . + CDS 148127 - 148561 652 ## SH1478 hypothetical protein + Prom 148592 - 148651 9.8 160 61 Op 1 16/0.000 + CDS 148679 - 149635 984 ## COG0207 Thymidylate synthase 161 61 Op 2 1/0.914 + CDS 149677 - 150153 696 ## COG0262 Dihydrofolate reductase 162 61 Op 3 1/0.914 + CDS 150175 - 151020 1126 ## COG1307 Uncharacterized protein conserved in bacteria + Prom 151025 - 151084 5.9 163 62 Op 1 5/0.029 + CDS 151123 - 151650 641 ## COG0225 Peptide methionine sulfoxide reductase 164 62 Op 2 1/0.914 + CDS 151643 - 152071 451 ## COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase 165 62 Op 3 1/0.914 + CDS 152084 - 152584 711 ## COG2190 Phosphotransferase system IIA components 166 62 Op 4 1/0.914 + CDS 152584 - 152805 249 ## COG4479 Uncharacterized protein conserved in bacteria + Term 152838 - 152891 16.0 + Prom 152867 - 152926 9.0 167 63 Op 1 1/0.914 + CDS 153006 - 154475 1674 ## COG0793 Periplasmic protease 168 63 Op 2 1/0.914 + CDS 154493 - 154996 650 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases 169 63 Op 3 1/0.914 + CDS 155015 - 156082 1321 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 170 63 Op 4 . + CDS 156100 - 156723 824 ## COG0671 Membrane-associated phospholipid phosphatase + Term 156728 - 156773 11.5 + Prom 156937 - 156996 9.7 171 64 Op 1 40/0.000 + CDS 157049 - 157708 888 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 172 64 Op 2 1/0.914 + CDS 157708 - 159066 1371 ## COG0642 Signal transduction histidine kinase + Prom 159073 - 159132 9.5 173 65 Op 1 21/0.000 + CDS 159236 - 162043 2985 ## COG0567 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes 174 65 Op 2 1/0.914 + CDS 162055 - 163362 1876 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes + Term 163409 - 163470 18.2 + Prom 163747 - 163806 11.2 175 66 Op 1 . + CDS 163956 - 164765 892 ## COG0346 Lactoylglutathione lyase and related lyases 176 66 Op 2 . + CDS 164794 - 165003 312 ## SH1499 hypothetical protein + Prom 165027 - 165086 2.5 177 67 Op 1 4/0.114 + CDS 165122 - 165913 1194 ## COG0714 MoxR-like ATPases 178 67 Op 2 . + CDS 165926 - 167815 1882 ## COG4548 Nitric oxide reductase activation protein 179 68 Tu 1 . - CDS 167812 - 167928 79 ## - Prom 168004 - 168063 2.6 + Prom 167856 - 167915 7.4 180 69 Tu 1 . + CDS 167945 - 169288 1424 ## COG1114 Branched-chain amino acid permeases + Term 169299 - 169345 1.1 - Term 169280 - 169337 -0.8 181 70 Op 1 4/0.114 - CDS 169345 - 170484 1436 ## COG3853 Uncharacterized protein involved in tellurite resistance 182 70 Op 2 1/0.914 - CDS 170523 - 171146 645 ## COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein 183 70 Op 3 . - CDS 171164 - 171367 189 ## COG1254 Acylphosphatases 184 70 Op 4 . - CDS 171324 - 171437 239 ## - Prom 171486 - 171545 3.6 + Prom 171445 - 171504 7.9 185 71 Tu 1 . + CDS 171605 - 171913 407 ## COG4699 Uncharacterized protein conserved in bacteria + Term 172055 - 172093 -0.7 + Prom 171916 - 171975 7.0 186 72 Tu 1 . + CDS 172119 - 172319 329 ## COG1278 Cold shock proteins + Term 172350 - 172383 1.4 - Term 172547 - 172592 9.6 187 73 Op 1 1/0.914 - CDS 172637 - 173902 1756 ## COG0019 Diaminopimelate decarboxylase 188 73 Op 2 1/0.914 - CDS 173904 - 174977 1182 ## COG0787 Alanine racemase 189 73 Op 3 6/0.029 - CDS 174984 - 176135 1220 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase - Prom 176177 - 176236 4.0 - Term 176180 - 176215 3.2 190 74 Op 1 2/0.314 - CDS 176244 - 176963 1112 ## COG2171 Tetrahydrodipicolinate N-succinyltransferase 191 74 Op 2 6/0.029 - CDS 176988 - 177713 994 ## COG0289 Dihydrodipicolinate reductase 192 74 Op 3 3/0.229 - CDS 177716 - 178597 1365 ## COG0329 Dihydrodipicolinate synthase/N-acetylneuraminate lyase 193 74 Op 4 13/0.000 - CDS 178599 - 179588 1276 ## COG0136 Aspartate-semialdehyde dehydrogenase 194 74 Op 5 1/0.914 - CDS 179648 - 180850 1358 ## COG0527 Aspartokinases - Term 181278 - 181321 6.2 195 75 Tu 1 . - CDS 181379 - 182983 1957 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 183016 - 183075 6.0 + Prom 183047 - 183106 8.1 196 76 Tu 1 . + CDS 183132 - 184028 450 ## PROTEIN SUPPORTED gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains + Term 184078 - 184115 5.1 + Prom 184116 - 184175 10.4 197 77 Op 1 39/0.000 + CDS 184263 - 185213 1290 ## COG0226 ABC-type phosphate transport system, periplasmic component + Term 185243 - 185292 10.0 + Prom 185311 - 185370 8.5 198 77 Op 2 38/0.000 + CDS 185396 - 186322 1324 ## COG0573 ABC-type phosphate transport system, permease component 199 77 Op 3 41/0.000 + CDS 186324 - 187244 1323 ## COG0581 ABC-type phosphate transport system, permease component 200 77 Op 4 32/0.000 + CDS 187322 - 188266 1256 ## COG1117 ABC-type phosphate transport system, ATPase component 201 77 Op 5 . + CDS 188273 - 188923 685 ## COG0704 Phosphate uptake regulator + Term 188973 - 189023 18.7 - Term 188961 - 189011 18.7 202 78 Tu 1 . - CDS 189023 - 190831 1968 ## COG1164 Oligoendopeptidase F - Prom 190943 - 191002 10.0 203 79 Tu 1 . + CDS 191000 - 191344 322 ## SH1528 hypothetical protein + Term 191435 - 191480 -0.9 - Term 191340 - 191392 11.5 204 80 Op 1 . - CDS 191423 - 191545 131 ## SH1529 hypothetical protein - Prom 191765 - 191824 8.7 205 80 Op 2 . - CDS 191837 - 191980 141 ## - Prom 192101 - 192160 9.5 - Term 192603 - 192640 6.4 206 81 Op 1 3/0.229 - CDS 192656 - 193915 1192 ## COG2348 Uncharacterized protein involved in methicillin resistance 207 81 Op 2 1/0.914 - CDS 193934 - 195196 1334 ## COG2348 Uncharacterized protein involved in methicillin resistance - Prom 195239 - 195298 8.6 - Term 195389 - 195435 9.0 208 82 Op 1 37/0.000 - CDS 195540 - 196274 356 ## PROTEIN SUPPORTED gi|148984260|ref|ZP_01817555.1| ribosomal protein L11 methyltransferase 209 82 Op 2 23/0.000 - CDS 196267 - 197481 1142 ## COG0133 Tryptophan synthase beta chain 210 82 Op 3 9/0.000 - CDS 197462 - 198112 326 ## COG0135 Phosphoribosylanthranilate isomerase 211 82 Op 4 21/0.000 - CDS 198109 - 198888 809 ## COG0134 Indole-3-glycerol phosphate synthase 212 82 Op 5 13/0.000 - CDS 198891 - 199895 1104 ## COG0547 Anthranilate phosphoribosyltransferase 213 82 Op 6 35/0.000 - CDS 199840 - 200469 491 ## COG0512 Anthranilate/para-aminobenzoate synthases component II 214 82 Op 7 1/0.914 - CDS 200466 - 201875 1194 ## COG0147 Anthranilate/para-aminobenzoate synthases component I - Prom 201960 - 202019 6.8 - Term 202100 - 202158 2.7 215 83 Tu 1 . - CDS 202363 - 203397 1241 ## COG1363 Cellulase M and related proteins - Prom 203420 - 203479 6.9 + Prom 203441 - 203500 5.5 216 84 Tu 1 . + CDS 203533 - 204624 1350 ## COG0287 Prephenate dehydrogenase + Term 204628 - 204682 14.1 - Term 204616 - 204670 10.3 217 85 Tu 1 . - CDS 204676 - 205938 1159 ## COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair - Prom 206058 - 206117 6.9 + Prom 206003 - 206062 6.5 218 86 Tu 1 . + CDS 206087 - 206272 420 ## COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog + Term 206318 - 206375 18.2 - Term 206320 - 206350 4.3 219 87 Tu 1 . - CDS 206351 - 207334 1335 ## COG1316 Transcriptional regulator - Prom 207402 - 207461 5.0 + Prom 207339 - 207398 13.4 220 88 Tu 1 . + CDS 207475 - 207990 544 ## COG0225 Peptide methionine sulfoxide reductase + Term 207991 - 208044 16.1 - Term 207986 - 208023 6.6 221 89 Tu 1 . - CDS 208028 - 210550 2647 ## COG2898 Uncharacterized conserved protein - Prom 210572 - 210631 8.4 - Term 210700 - 210739 5.0 222 90 Op 1 . - CDS 210756 - 211985 1337 ## COG0628 Predicted permease 223 90 Op 2 1/0.914 - CDS 212049 - 212903 968 ## COG3711 Transcriptional antiterminator - Prom 212939 - 212998 5.1 224 91 Tu 1 . - CDS 213033 - 214493 826 ## PROTEIN SUPPORTED gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 - Prom 214637 - 214696 9.9 - Term 214551 - 214597 2.2 225 92 Op 1 24/0.000 - CDS 214703 - 217102 2926 ## COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit 226 92 Op 2 . - CDS 217099 - 219099 2536 ## COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit - Prom 219259 - 219318 6.5 + Prom 219123 - 219182 9.5 227 93 Op 1 2/0.314 + CDS 219301 - 219912 753 ## COG0344 Predicted membrane protein + Term 219953 - 220014 1.3 + Prom 219990 - 220049 7.8 228 93 Op 2 . + CDS 220072 - 220371 450 ## COG4841 Uncharacterized protein conserved in bacteria + Term 220377 - 220425 8.6 - Term 220365 - 220413 5.6 229 94 Tu 1 . - CDS 220420 - 220890 513 ## COG0824 Predicted thioesterase - Prom 220919 - 220978 4.8 - Term 221000 - 221044 8.5 230 95 Tu 1 . - CDS 221086 - 223791 3492 ## COG1048 Aconitase A - Prom 223837 - 223896 10.4 - Term 224112 - 224152 9.1 231 96 Tu 1 . - CDS 224163 - 225809 2198 ## COG1292 Choline-glycine betaine transporter - Prom 225985 - 226044 10.8 + Prom 225826 - 225885 11.2 232 97 Tu 1 . + CDS 226025 - 226381 471 ## COG1970 Large-conductance mechanosensitive channel + Term 226418 - 226480 13.1 233 98 Op 1 . - CDS 226857 - 227234 305 ## COG3666 Transposase and inactivated derivatives 234 98 Op 2 . - CDS 227292 - 227546 134 ## SE0076 putative transposase 235 98 Op 3 2/0.314 - CDS 227595 - 227795 230 ## COG3666 Transposase and inactivated derivatives 236 98 Op 4 . - CDS 227817 - 228053 286 ## COG3666 Transposase and inactivated derivatives - Prom 228085 - 228144 9.4 + Prom 227991 - 228050 8.0 237 99 Tu 1 . + CDS 228116 - 228250 98 ## + Term 228259 - 228308 9.1 - Term 228245 - 228295 13.1 238 100 Op 1 28/0.000 - CDS 228329 - 231364 2943 ## COG0419 ATPase involved in DNA repair 239 100 Op 2 1/0.914 - CDS 231366 - 232490 857 ## COG0420 DNA repair exonuclease - Prom 232582 - 232641 9.4 - Term 232525 - 232575 8.5 240 101 Tu 1 . - CDS 232651 - 233118 362 ## COG4846 Membrane protein involved in cytochrome C biogenesis - Prom 233154 - 233213 4.6 - Term 233195 - 233243 7.1 241 102 Tu 1 . - CDS 233251 - 233493 285 ## COG3763 Uncharacterized protein conserved in bacteria - Prom 233610 - 233669 6.0 - Term 233647 - 233700 13.8 242 103 Op 1 . - CDS 233722 - 235710 2927 ## COG0021 Transketolase - Prom 235743 - 235802 10.9 243 103 Op 2 . - CDS 235812 - 236051 386 ## COG4224 Uncharacterized protein conserved in bacteria - Prom 236132 - 236191 7.8 244 104 Tu 1 . - CDS 236238 - 236471 221 ## SH1567 hypothetical protein - Prom 236645 - 236704 5.8 + Prom 236453 - 236512 4.6 245 105 Tu 1 . + CDS 236615 - 237235 974 ## COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases) + Term 237291 - 237326 4.3 - Term 237279 - 237314 5.1 246 106 Op 1 . - CDS 237317 - 237385 56 ## 247 106 Op 2 1/0.914 - CDS 237439 - 238464 178 ## PROTEIN SUPPORTED gi|163764795|ref|ZP_02171848.1| ribosomal protein L30 248 106 Op 3 1/0.914 - CDS 238479 - 239456 1225 ## COG0516 IMP dehydrogenase/GMP reductase - Prom 239589 - 239648 7.9 249 107 Tu 1 3/0.229 - CDS 239651 - 239920 460 ## PROTEIN SUPPORTED gi|228475335|ref|ZP_04060058.1| ribosomal protein S14p/S29e - Prom 239955 - 240014 10.5 - Term 240001 - 240050 10.0 250 108 Tu 1 . - CDS 240092 - 240241 270 ## PROTEIN SUPPORTED gi|15924325|ref|NP_371859.1| 50S ribosomal protein L33 - Prom 240454 - 240513 6.2 + Prom 240241 - 240300 6.1 251 109 Tu 1 . + CDS 240490 - 241938 1702 ## COG0833 Amino acid transporters + Term 241953 - 241997 8.1 + Prom 241985 - 242044 8.5 252 110 Tu 1 . + CDS 242075 - 242389 406 ## SH1575 hypothetical protein + Term 242497 - 242539 -0.3 - Term 242398 - 242450 -0.9 253 111 Tu 1 1/0.914 - CDS 242471 - 243274 1120 ## COG0561 Predicted hydrolases of the HAD superfamily 254 112 Op 1 19/0.000 - CDS 243325 - 244242 947 ## COG0083 Homoserine kinase 255 112 Op 2 11/0.000 - CDS 244244 - 245305 228 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 256 112 Op 3 . - CDS 245311 - 246588 1497 ## COG0460 Homoserine dehydrogenase - Prom 246713 - 246772 8.9 + Prom 246612 - 246671 5.3 257 113 Tu 1 . + CDS 246788 - 248167 1463 ## COG0527 Aspartokinases Predicted protein(s) >gi|312979643|gb|ACRM01000022.1| GENE 1 318 - 1046 765 242 aa, chain + ## HITS:1 COG:SA1437 KEGG:ns NR:ns ## COG: SA1437 COG2049 # Protein_GI_number: 15927189 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Staphylococcus aureus N315 # 1 238 1 239 244 270 53.0 1e-72 MEIKIINEQSIALYFKEEISESNYRDVESVTKHIHAKRIDGIKDVIPSYRAIMINFDNIK LNFKQLIDILDLKQLNGEHAKDISDKTIIHIPVLYNSEVGPDLPYVAKHNKLTTDEVIRI HTQNEYLVYMLGFMPGFPFLGGLDSRLHTPRRDEPRVKIDAGSVGIANNQTGLYPSDSPG GWQIIGRTPLKVFDINDDEMSLYQAGDYIKFYSIDENTFNDIQSEIAENRFNKEKWVLNH VD >gi|312979643|gb|ACRM01000022.1| GENE 2 1036 - 2040 1110 334 aa, chain + ## HITS:1 COG:SA1436 KEGG:ns NR:ns ## COG: SA1436 COG1984 # Protein_GI_number: 15927188 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Staphylococcus aureus N315 # 1 330 1 332 336 387 56.0 1e-107 MSISIIQPGMFTTVQDEGRFGFQHLGFSSAGAMDLYSYLIGKTLIGNNGPSLEYTIIGPT LQFNKDNTFILTGAHVNAKLNEETVDINTVIYACKGDILKVGAVTAGARGYIFFGHPLDI QPIAESYSTHTRSKIGGYKGRPLSKGDLIYLKENPSFKQNLGKTTVYNAIPEDNIIHIIT GPQIEAFSKESINKLVNMEYKVSEKSDRMGYRLNGEHIPPKTGADIISEPVALGSIQVPN DGNPIILLNDKQTIGGYTKIATVTQLDLNKIAQFKPGDLIRFKWSTIEESAKVQEQYLNH FNHLNAEINTSPTFNMGEMRPTAKKLTKIITEER >gi|312979643|gb|ACRM01000022.1| GENE 3 2043 - 2483 506 146 aa, chain + ## HITS:1 COG:SA1435 KEGG:ns NR:ns ## COG: SA1435 COG0511 # Protein_GI_number: 15927187 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Staphylococcus aureus N315 # 1 146 1 149 149 134 60.0 4e-32 MDIKKIKEVIKLVKSNDVKKFKYKDNKNEIELDFTEQSNNQNNSTPVIQSEGNSQDKSIS ENNPSNDSSKTITSPMVGTFFLQDSKELTDPIIQVGDNIKSGDIIGYVEAMKVMNEVTSD IDGEITDIVVEHGTNVEYDQVLVKVK >gi|312979643|gb|ACRM01000022.1| GENE 4 2497 - 3858 1534 453 aa, chain + ## HITS:1 COG:SA1434 KEGG:ns NR:ns ## COG: SA1434 COG0439 # Protein_GI_number: 15927186 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Staphylococcus aureus N315 # 1 453 1 453 453 749 84.0 0 MYRCLVANRGEIAVRIIRACREMGIETVAVYAKGDEKSLHVSLADQAVCIGEANPLDSYL NIERIIGAAEITGSNAIHPGYGFLSESTTFAQKVEENDIHFIGPNKKTMEMMGDKITARQ TVHSAGVPVIPGSTDAVNSVEEIKELAKDIGYPLVLKAASGGGGKGIRIVKEENQLEKSL KEAKSEGQKYFNDDRVYVEAFIPVAKHIEVQVIGDGKENYVHLGERDCSVQRKNQKLIEE APCAALSEERREKICNDAVKVAKASNYRSAGTIEFLVTEEAHYFIEMNARIQVEHTVTEM RADRDLLQAQLYLLLHNKLPFSQEDIVFNGHVIEARINAENPEKKFQPTPGKVKRLHLPQ GFNIRVDSLLYAGYQVSPYYDSLVAKVIVKDSNRTSAINKLKVALDEMVIDGFTTTADFL YAVLSYPPYAKGNAKEVDIKFLEKHHIVKGVKL >gi|312979643|gb|ACRM01000022.1| GENE 5 3858 - 4610 822 250 aa, chain + ## HITS:1 COG:SA1433 KEGG:ns NR:ns ## COG: SA1433 COG1540 # Protein_GI_number: 15927185 # Func_class: R General function prediction only # Function: Uncharacterized proteins, homologs of lactam utilization protein B # Organism: Staphylococcus aureus N315 # 1 250 1 250 250 402 77.0 1e-112 MKVDLNCDLGEAFGNYSFGGDKDIIPLITSANIACGFHAGDENVMNQTVKLAKENHVSIG AHPGLPDLKGFGRRKMDINPTEVYNLIVYQLGALEGFCKVHQTRINHVKPHGALYNMGAK NKDIAKAIAKAIYDFDSAIMLVGLSNSLLISEAKAIGLKTASEVFADRRYEDNGQLVNRK ESDAVITDTDEALKQVLKMVTENKVISRNGKEIDLETDTICVHGDGKHALEFVEQIRKKL TKEGIDIQSL >gi|312979643|gb|ACRM01000022.1| GENE 6 4623 - 5861 1478 412 aa, chain + ## HITS:1 COG:SA1432 KEGG:ns NR:ns ## COG: SA1432 COG1914 # Protein_GI_number: 15927184 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 1 410 1 409 409 574 85.0 1e-164 MKENLNQTQEKDNFKFTKSHRRLLYGSVFLMATSAIGPAFLTQTAVFTAEFYASFAFAIL ISILIDIGAQINIWRVLVVTGLRGQEASNKVLPGLGTLISILIAFGGLAFNIGNIAGAGL GLNAMFGLDVKWGAAITAIFAILIFVSKSGQKIMDIVSMILGVIMILVVAYVMVVSNPPY GDALIHSVAPEHPIKLILPIITLVGGTVGGYITFAGAHRILDSGMKGKEFLPFVNRSAIA GILTTGIMRTLLFLAVLGVVVTGVTLNADNPPASVFEHAIGPIGKNIFGVVIFAAAMSSV IGSAYTSATFLKTLHKSLFNKNNLIVIVFIVISTIIFLLIGKPISLLIIAGAINGWILPI TLGAILIASRKKSIVGDYKHPTWMLVFGIVAVIVTIITGILSLQDLATLWKG >gi|312979643|gb|ACRM01000022.1| GENE 7 6038 - 6724 827 228 aa, chain + ## HITS:1 COG:SA1427 KEGG:ns NR:ns ## COG: SA1427 COG0775 # Protein_GI_number: 15927179 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside phosphorylase # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 298 73.0 4e-81 MIGIIGAMEEEVAILKHKLVNLNEVEVAHVKFYRGQLNDKDVVLTQSGIGKVNAAISTTL LIEKFKPTLIINTGSAGALDDSLSVGDILISNHVMYHDADATAFGYDIGQIPQMPAQFEA NQQLLQLTEKVVKQQNLTAKIGQIVSGDSFIGSSEQRLKIKRQFSEAMAVEMEATAIAQT CYQFNLPFIVTRAVSDLANGKAEMSFEEFLGKAAQSSSNIVEQLVKEI >gi|312979643|gb|ACRM01000022.1| GENE 8 6752 - 7279 678 175 aa, chain + ## HITS:1 COG:SA1426 KEGG:ns NR:ns ## COG: SA1426 COG2179 # Protein_GI_number: 15927178 # Func_class: R General function prediction only # Function: Predicted hydrolase of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 175 1 175 175 267 72.0 7e-72 MGLIKKYFMPSDYVQSVFQIDIEKLANSGFKGIITDLDNTLVGWDVKTPTKEIQEWFKKA NDLGLTITIVSNNSEKRVSGFSKDLDVDFIFKARKPMGRAFKKAIQHMNIKPEETVVIGD QMLTDVLGGNNNGLYTIMVVPVKKTDGFLTRLNRIIERRLLNYFKRKGYITWEEN >gi|312979643|gb|ACRM01000022.1| GENE 9 7280 - 8380 1180 366 aa, chain + ## HITS:1 COG:SA1425 KEGG:ns NR:ns ## COG: SA1425 COG1161 # Protein_GI_number: 15927177 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 1 366 1 366 366 618 83.0 1e-177 MDETLKCIGCGAPLQSEDKNAPGYVPEHNLFRDDVICQRCFRLKNYNEIQDVGMDSEDFL NLLNGLSDRQGIIVNVIDVFDFEGSFINALKRIVGNKKIILAANKLDLLPRQINQRRVKE WLKRTARKYGLEAEEVVLISAHKGWGIDALLESINRFRNHQDVYIVGTTNVGKSTLINKL IEQSVGEKDVVTTSRFPGTTLDMIDIPLDENTFMYDTPGIIQAHQMTHYVTEKELKVIIP RNEIKQRVFQLNEGQTLFFGGLARIDYVSGGKRPLVCYFSNDLNIHRTKTEKANDLWRNQ IGHLLSPPSNPEKFNISDMKAVRLETGKEKRDIMISGLGFITLEAGAKVIVRVPKSVDVV LRQSIM >gi|312979643|gb|ACRM01000022.1| GENE 10 8393 - 9199 1000 268 aa, chain + ## HITS:1 COG:SA1424 KEGG:ns NR:ns ## COG: SA1424 COG0169 # Protein_GI_number: 15927176 # Func_class: E Amino acid transport and metabolism # Function: Shikimate 5-dehydrogenase # Organism: Staphylococcus aureus N315 # 1 268 1 268 268 397 73.0 1e-111 MKFAVIGDPISHSLSPVMHNTNFKVLGLNDTYEALHIPVQDFDNIKEIITEKNLSGFNIT IPHKERIIPFLDDIDEQAKAVGAVNTVKIEGNKWIGYNTDGLGYVKGLKQVYPDLSNAYI LILGAGGASKGIATALSQCVQPKLTIANRTMSRFDNWKLDINAITLQQAERYLDEFDIII NTTSAGLDNNKESVIRLDQLSPNTLVSDIIYIPYKTSFLQQAEEKGNPIYNGLDMFVYQG AESFKIWTGKDAEIKEMKLAVLNQLKGE >gi|312979643|gb|ACRM01000022.1| GENE 11 9206 - 9496 297 96 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212638657|ref|YP_002315177.1| Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Anoxybacillus flavithermus WK1] # 1 96 1 96 97 119 58 2e-25 MLTGKQKRYLRSLAHNIDPIFQIGKAGINDNMISQIDETLENRELIKIHILQNNFDDKND LAQTLSQATNSEVVQVIGSMIVIYRESQENKEISLP >gi|312979643|gb|ACRM01000022.1| GENE 12 9501 - 10070 561 189 aa, chain + ## HITS:1 COG:SA1422 KEGG:ns NR:ns ## COG: SA1422 COG1057 # Protein_GI_number: 15927174 # Func_class: H Coenzyme transport and metabolism # Function: Nicotinic acid mononucleotide adenylyltransferase # Organism: Staphylococcus aureus N315 # 1 189 1 189 189 252 62.0 2e-67 MKKIVLYGGQFNPIHTAHMLVANEVFHKIKPDVFYFLPSYMAPLKEHNDYLDAHYRIKMI NMVIEQLGFGNICYAELERKGQSYTYDTLKALIDQNPYDKFYFVIGSDQYDQLDKWYKID ELKQMIIFIVVNREKNIQKVDENMISISIPRMDISSSMIRQRVKDKKTIDILVPRNVSKY IREEGFYEH >gi|312979643|gb|ACRM01000022.1| GENE 13 10060 - 10644 789 194 aa, chain + ## HITS:1 COG:SA1421 KEGG:ns NR:ns ## COG: SA1421 COG1713 # Protein_GI_number: 15927173 # Func_class: H Coenzyme transport and metabolism # Function: Predicted HD superfamily hydrolase involved in NAD metabolism # Organism: Staphylococcus aureus N315 # 1 194 1 194 194 303 77.0 1e-82 MNTKEAKKLIENKLPEKRFKHSLRVADTAVKLAEIYDGDKSKAELAGILHDYCKYADLGK MYQVVRQHDLDSNLLSYGSEILHGPVCAALMKADYGIEDEEILLAIKYHTTGRKEMTKTE KLVFIADYIEPGRKTPGVEEIRDIAYNQGSLDKTIYEISKRTVLFLISKDITVYGSTIEC LNYYNYSDQKIKDD >gi|312979643|gb|ACRM01000022.1| GENE 14 10645 - 10998 475 117 aa, chain + ## HITS:1 COG:SA1420 KEGG:ns NR:ns ## COG: SA1420 COG0799 # Protein_GI_number: 15927172 # Func_class: S Function unknown # Function: Uncharacterized homolog of plant Iojap protein # Organism: Staphylococcus aureus N315 # 1 117 1 117 117 171 80.0 3e-43 MNSEELLNIAVTATEDKKAEDIVSLNMQGISDMTDYFVVCHGNNERQVQSIARAVKEKVH ENNIEVKRMEGYQSARWVLIDLADVVVHIFHKDERNYYNIEKLYQDAPIESYNQVAY >gi|312979643|gb|ACRM01000022.1| GENE 15 11000 - 11731 719 243 aa, chain + ## HITS:1 COG:SA1419 KEGG:ns NR:ns ## COG: SA1419 COG0500 # Protein_GI_number: 15927171 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: SAM-dependent methyltransferases # Organism: Staphylococcus aureus N315 # 1 243 1 238 238 284 59.0 1e-76 MMQYTEMSKVYDQLTQDQPYEEWFNIVKYYTRTMSSNDSINILDIGCGTGSLTQLLPSIG TVTGMDLSTDMLSIAANKSNQVTWLEGDMTDFSLNTTYDVVTIFCDSLNYLPDIDDIVNT FNCVFNHLSHLGMFIFDIHTIYKMNTAFNNQCYIDDNDNIFLAWEAIKGEEPYSVYHDMS FFLKQHNGNYHRFNESHYQRTFEKDFYIRLLKQTGFNRIETFVDFDINNHNEKGDRLFFV AYK >gi|312979643|gb|ACRM01000022.1| GENE 16 11784 - 12446 665 220 aa, chain + ## HITS:1 COG:SA1418 KEGG:ns NR:ns ## COG: SA1418 COG1555 # Protein_GI_number: 15927170 # Func_class: L Replication, recombination and repair # Function: DNA uptake protein and related DNA-binding proteins # Organism: Staphylococcus aureus N315 # 1 219 1 224 225 147 40.0 1e-35 MFKYRNEIIQLLTKWKTHIIILIAVVLLFIVILMLMKNNETSEHMTTSNANNSQFNNNEK YNKNKNDNNLSTSSKENSTIYVDVKGAVKLPDVYEMKKNDRVKDVLKKAKVSENADITKI NLSEKLTDQKMIYIPNKNETKINATPTNQSNLNTSESIKVNLNTANERELLNVPGIGPTK VKEIIKYREEKGQFNNVEDLKQVRGIGGKTFEKLKDYFTT >gi|312979643|gb|ACRM01000022.1| GENE 17 12513 - 12977 456 154 aa, chain + ## HITS:1 COG:SA1417 KEGG:ns NR:ns ## COG: SA1417 COG2131 # Protein_GI_number: 15927169 # Func_class: F Nucleotide transport and metabolism # Function: Deoxycytidylate deaminase # Organism: Staphylococcus aureus N315 # 1 152 1 152 153 273 86.0 1e-73 MDRIKWDEYFMAQSHLLALRSTCQRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDVGCLI EDDHCIRTIHAEMNALLQCAKQGVSSDNATIYVTHFPCLNCTKSIIQAGIKKIYYAKDYH NHKYAIKLLNQAGIEYEKIPFSANKIAEFLTKEC >gi|312979643|gb|ACRM01000022.1| GENE 18 12971 - 15160 1164 729 aa, chain + ## HITS:1 COG:SA1416_2 KEGG:ns NR:ns ## COG: SA1416_2 COG2333 # Protein_GI_number: 15927168 # Func_class: R General function prediction only # Function: Predicted hydrolase (metallo-beta-lactamase superfamily) # Organism: Staphylococcus aureus N315 # 472 722 2 252 265 253 52.0 7e-67 MLVVLYALSFLSGILWVHLKLFSILIFTIILIIVYRKSIPLYHYLLILSFFFLALFQVHH TLKTNHLILQNLKVHSNIHSKVTFQNDIKQFNQIIKGQFRYKYNLYHFTFKSPQLRAKDL KNRECKINGNITNSIQNEVYVYINQIDNKYCTKVNHISFIDKHLNYIQNKLYHSSLKYPE RVLALITGDTGAIDTDYLDKVKAIGIYHLLAVSGSHVATIIFIIQYSLVRFNIPKLFIRV FIIIILILFIFYTNFAPSALRAVLTAITFFIIPKAFKISSISVLSLVFLLMTIWNMNFAY DIGFQFSFIISFFILLSKPLFNNQSILKNYIYITIIAQFSSMIISIYHFNQFQWIGFISN VIFVPLYSFIIFPLSIVLFIFYHFFSDLRYINMVANQLFELHDRIMQPFILFRNYQINIA DQSNLSLLYCFILLTLLTTFICYKNYRVFLIIIILFIIFLRFTNQPLATTFTALNVGQGD SFLFQTKNNETVMVDTGGKVVQTKIKDNHNIAKYHIIPTLKSRGISKIDHLILTHPHNDH IGEFPYLAQNIRIKNLYLYIKSYSIEQIKTIHTTCSIYHIKVIDVSETNKIQLKEAKISF LNAFIDSNEDKNAQSIISLIEYKNYKLLLMGDAIEENENLLLKKYHLPLIDVLKVGHHGS KTSSSKHLLEIIQPKISIISSGKNNTFHLPNNETIDKLEKINSHIYNTQTDGDITLNLDN QLISSFNKS >gi|312979643|gb|ACRM01000022.1| GENE 19 15231 - 16205 866 324 aa, chain + ## HITS:1 COG:SA1415 KEGG:ns NR:ns ## COG: SA1415 COG1466 # Protein_GI_number: 15927167 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, delta subunit # Organism: Staphylococcus aureus N315 # 1 324 1 324 324 431 77.0 1e-120 MANNIMAIYGEVPELVEKKSNEIVESYLNEKKDDFNYVKYNLYDTSFNQIMEEALTMPFI SEKKAIVVKNAFIFTGEKVSKDIQPNNEQVNEFLEKYDGENFIIFEVYQNKLDERKKITK TLKKTSKLTKVEQMSEQEIKKWIKNKLHENFKDIKQDALDLFIELTGINFNIVSQELEKI ILFLGERPTINKKDVEEIINRSLEQNVFLLTEYIQKGEKYKAIQLIKDLIVMKEEPIKLL ALITSNYRLYYQCKILSRKGYSGQQIAKTINVHPYRVKLALNQVKHYQLTHLLNIIDQCA ETDYKLKSSYMDKQLILELFILSL >gi|312979643|gb|ACRM01000022.1| GENE 20 16247 - 16498 401 83 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475953|ref|ZP_04060661.1| ribosomal protein S20 [Staphylococcus hominis SK119] # 1 83 1 83 83 159 100 1e-37 MPNIKSAIKRVRTTETAEERNISQKNAMRTAVKNAKSAIENNADNKAELVNFAIKSVDKA AHSNLIHSNKADRIKSQLMSSSK >gi|312979643|gb|ACRM01000022.1| GENE 21 16829 - 18652 2308 607 aa, chain + ## HITS:1 COG:SA1413 KEGG:ns NR:ns ## COG: SA1413 COG0481 # Protein_GI_number: 15927165 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane GTPase LepA # Organism: Staphylococcus aureus N315 # 1 607 1 607 607 1092 91.0 0 MDMQERYNRRDNIRNFSIIAHIDHGKSTLADRILENTKSVETREMQNQLLDSMDLERERG ITIKLNAVRLKYESKDGQTYTFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQ TLANVYLALDNDLELLPVVNKIDLPAAEPERVKQELEDVIGLDKDEVVLASAKSNIGIDE ILEKIVEVVPPPEGDPSAPLKALIFDSEYDPYRGVISSIRVMEGVVKAGDRIKMMATGKE FEVTEVGINTPKQLPIEELTVGDVGYIIASIKNVDDSRVGDTITHVDRPADAPLKGYKKM NPMVYCGLFPIDNKDYNDLREALEKLQLNDASLEFEPESSQALGFGFRTGFLGMLHMEII QERIEREFGIELIATAPSVIYKCEMNDGSEVIVDNPSQMPERDRIKAIYEPYVKATMMVP NDYVGAVMELCQRKRGQFINMDYLDDIRVNIVYEIPLSEVVFDFFDQLKSNTKGYASFDY EFIENKESNLVKMDILLNGDKVDALSFIVHRDFAYERGKALVEKLKTLIPRQQFEVPVQA AIGQKIVARTNIKSMGKNVLSKCYGGDISRKRKLLEKQKAGKAKMKAVGNVEIPQDAFLA VLKMDDE >gi|312979643|gb|ACRM01000022.1| GENE 22 18735 - 19856 1033 373 aa, chain + ## HITS:1 COG:SA1412 KEGG:ns NR:ns ## COG: SA1412 COG0635 # Protein_GI_number: 15927163 # Func_class: H Coenzyme transport and metabolism # Function: Coproporphyrinogen III oxidase and related Fe-S oxidoreductases # Organism: Staphylococcus aureus N315 # 1 373 1 373 374 544 71.0 1e-154 MSIKSAYIHIPFCVRICTYCDFNKYFINKQPVDEYISALIKEMKTSEIRNLETMYVGGGT PTALNLKQLETLLKAIQSTFSIKGEYTFEANPDELTLDKVKLLHSYGVNRISMGVQTFKP ELLKILGRTHKTQDIYNAVDYARKANIESISLDLMYHLPTQTLDDFSDSLNRAIQMDIDH ISSYGLILEPKTQFYNMYRKGKLKLPNEDLGAEMYQYLMNVLGETSFKQYEISNFAKSHH ESRHNKTYWLNEEYYGFGAGASGYVNGERYSNLNPVNHYINAINNHQRPILTSNFPTQSE RMEEEMFLGLRMNKGVDKVKFLSKFGTSMDKVFGETINNLKKKNLLYERDNHISLTNRGK IIGNEVFEAFLLN >gi|312979643|gb|ACRM01000022.1| GENE 23 19959 - 20936 773 325 aa, chain + ## HITS:1 COG:SA1411 KEGG:ns NR:ns ## COG: SA1411 COG1420 # Protein_GI_number: 15927162 # Func_class: K Transcription # Function: Transcriptional regulator of heat shock gene # Organism: Staphylococcus aureus N315 # 1 325 1 325 325 411 70.0 1e-115 MITNRQLSILNAIVEDYVDLGQPIGSKTLIDRHNLNVSPATIRNEMKYLEELNFLEKIHS SSGRAPSEQGFRLYVNQLLKQTSHQKQNKVQRLNQLLIENHYDISSALSYFADELSIKSQ YATLVVRPNHKTDIINNVHLIRANSSIIIMVIIYNSGHVEHLHLSESMEFDDDRLTRISN FLTDNYYKSQFDFNKKLKQFTNSIAEQSFINELTIMLTSHLHKQSNSIFMGGKVKLIDAL NETNVSSIQPILQYLESEKIIELLENISTSEINVKIGHEIDKGLSDISIITSQYHFDDAL KGQIAVIGPTAMHYQNVIQLLNQIW >gi|312979643|gb|ACRM01000022.1| GENE 24 20968 - 21591 943 207 aa, chain + ## HITS:1 COG:SA1410 KEGG:ns NR:ns ## COG: SA1410 COG0576 # Protein_GI_number: 15927161 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone GrpE (heat shock protein) # Organism: Staphylococcus aureus N315 # 1 207 1 208 208 180 68.0 2e-45 MTEKDESVKNNTEHTEENETVKNEASSLNDVENNPSEEELNNESTSEHDNEDKNDQSKDE EIQQLQLKANENEEKYLRLYAEFENYKRRIRNENETNKKYQAQHVLTDILPTIDNIERAL QIEGDDESFKSLKKGVQMIHESLLRALKDNGLEEIESEGQEFDPNFHQAVVQDDNPDFNS GEITQELQKGYKLKDRVLRPSMVKVNQ >gi|312979643|gb|ACRM01000022.1| GENE 25 21634 - 23475 2570 613 aa, chain + ## HITS:1 COG:SA1409 KEGG:ns NR:ns ## COG: SA1409 COG0443 # Protein_GI_number: 15927160 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Molecular chaperone # Organism: Staphylococcus aureus N315 # 1 612 1 610 610 942 91.0 0 MSKVIGIDLGTTNSCVSVLEGDEPKVIQNPEGARTTPSVVAFKNGETQVGEVAKRQAITN PNTVQSIKRHMGTDYKVDIDGKSYTPQELSAMILQNLKNTAESYLGDKVDKAVITVPAYF NDAERQATKDAGKIAGLEVERIINEPTAAALAYGLDKTEQDQKVLVFDLGGGTFDVSILE LGDGVFEVLSTAGDNKLGGDDFDQVIIDYLVSEFKKENGVDLSQDKMALQRLKDAAEKAK KDLSGVSQTQISLPFISAGENGPLHLEINLTRSKFEELADSLIRRTMEPTRQALKDAGLS TSEIDEVILVGGSTRIPAVQEAVKKEIGKEPHKGVNPDEVVAMGAAIQGGVITGDVKDVV LLDVTPLSLGIEIMGGRMNTLIERNTTIPTSKSQVYSTAADNQPAVDIHVLQGERPMASD NKTLGRFQLTDIPPAPRGVPQIEVTFDIDKNGIVNVTAKDLGTNKEQNITIQSSSALSDE EIDRMVKDAEENAEADKKRREEVDLRNEADSLVFQVEKTIKDLGENISEEDKSNAESKKD ALKSALEGQDLDDIKAKKEELEQVIQELSAKVYQQAQQAQQAQQQAQDNSQQSNDSNVED AEFKEVKDDEDKK >gi|312979643|gb|ACRM01000022.1| GENE 26 23629 - 24759 1491 376 aa, chain + ## HITS:1 COG:SA1408 KEGG:ns NR:ns ## COG: SA1408 COG0484 # Protein_GI_number: 15927159 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: DnaJ-class molecular chaperone with C-terminal Zn finger domain # Organism: Staphylococcus aureus N315 # 1 376 1 379 379 590 82.0 1e-168 MAKRDYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDN KRANYDQFGHSGAQGGFGSQGFGGQDFSGFGGGFEDIFSSFFGGSRQRDPNAPRKGDDLQ YTMTLEFDEAVFGTKKEISIRKDVTCHTCHGDGAKPGTSKKTCSYCHGSGHVSVEQNTIL GRVRTEQTCPKCEGSGQEFEEPCPTCHGKGTENKTVKLEVTVPEGVDNEQQIRLAGEGAP GENGGPHGDLYVVFRVKPSDKFRRDGDDLFYELNISFPQASLGDEIKVPTLNSNVMLTIP AGTQNGKQFRLKEKGVKNVHGYGHGDLFVNIKVVTPNKLTDRQKELMREFAEISGENPEE QPANFKDKARKFFRGE >gi|312979643|gb|ACRM01000022.1| GENE 27 24762 - 25700 1638 312 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228476084|ref|ZP_04060792.1| ribosomal protein L11 methyltransferase [Staphylococcus hominis SK119] # 1 312 1 312 312 635 100 0.0 MNWTEFAVTVNHEVESLVTNILENYGSNGVVIEDSNDLINQPTDKFGEIYELKKEDYPEQ GVRLKAYFNELKYNTQFKNKLENEILNLDLIDDSVVEFSAKTIAEVDWANEWKNYFHPFR ASKRFTIVPSWEDYSKESEDELCIELDPGMAFGTGDHPTTSMCLKAIETYVTPDSSVIDV GTGSGILSIASHLIGVKRIKALDIDEMAVGVAKENFRKNHCENDIEAIPGNLLKEENEKF DVVIANILAHIIDEMIEDAYNTLNEDGYFITSGIIEEKHEDILSHMKRVGFNIVSINHDN GWVCIVGQKVSE >gi|312979643|gb|ACRM01000022.1| GENE 28 25702 - 26454 540 250 aa, chain + ## HITS:1 COG:SA1406 KEGG:ns NR:ns ## COG: SA1406 COG1385 # Protein_GI_number: 15927157 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 250 1 250 250 346 70.0 2e-95 MQRYFINQNADSHQRFFITNEEDIHHIKNVMRNTVGNKIIINFNDKKVFISEITNINSNQ IEILPINQLDIDTELPVDVTICSGLIKADKYEWLLQKSTELGANHFISVGMDRSVVKLQE NKVQKKIDRWQKIVKEAAEQSYRLVIPDVKFQSNLKVIYDTINNYDYVLIAYEDEAKHGE KSRFKNILNNFQTNDRVLIIFGPEGGFSDKEIDLFREVSLNVGLGPRILRAETAPLYALS AISFEKELMG >gi|312979643|gb|ACRM01000022.1| GENE 29 26460 - 27806 1823 448 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|16079597|ref|NP_390421.1| hypothetical protein BSU25430 [Bacillus subtilis subsp. subtilis str. 168] # 1 435 1 439 451 706 78 0.0 MATVAFHTLGCKVNHYETEAIWQLFKDANYERVDFETNADVYVINTCTVTNTGDKKSRQV IRRAIRRNPDAVVCVTGCYAQTSSAEIMEIPGVDVVVGTQDRHKLLSYIDQFREERQPIN GVGNIMKNRTYEELDVPYFTDRTRASLKIQEGCNNFCTFCIIPWARGLMRSRDPEKVVEQ ATQLVQSGYKEIVLTGIHTGGYGQDLKNYNLAQLLRDLEEIDGLERIRISSIEASQLTDE VIDVLKNSNKVVRHLHVPLQSGSDTVLKRMRRKYTMEHFSERLTKLHDALPDLAVTSDVI VGFPGETEEEFQETYDFIVKHKFSELHVFPYSQRIGTPAARMGDQIDESIKNERVHKLIA LSDQLAKEYASKFENEVLEVIPEEVGETKNTLVGYADNYMKVEFEGSEDLIGEIVKVKIN KADYPINIGSAVRIVNHATNKTEEGILL >gi|312979643|gb|ACRM01000022.1| GENE 30 27939 - 28115 282 58 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228476120|ref|ZP_04060828.1| ribosomal protein S21 [Staphylococcus hominis SK119] # 1 58 1 58 58 113 100 9e-24 MSKTVVRKNESLEDALRRFKRSVSKSGTIQEVRKREFYEKPSVRRKKKSEAARKRKFK >gi|312979643|gb|ACRM01000022.1| GENE 31 28265 - 28972 567 235 aa, chain + ## HITS:1 COG:SA1403 KEGG:ns NR:ns ## COG: SA1403 COG1030 # Protein_GI_number: 15927154 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane-bound serine protease (ClpP class) # Organism: Staphylococcus aureus N315 # 19 233 20 234 235 240 71.0 1e-63 MISISLIHIENTFASLNHSWLNHMSNIIVNPIVLLILTCIIFLGFLYQLYSKRINILGIL ASLALLILFLGFLISGDVNLISILLFFIGIILLIIELFVVGAVIGIIGIVLIIVSMIMLG DNILVMLFNVIVALIFSIIEWVILVKVFNRKIPFFDKVVLNDSTSTEAGYRSHDDRSYLV GKTAYTTTDLRPAGIITLDDKRIDAVSDGTFILRNKKVKILEVEGSRVVVREIKI >gi|312979643|gb|ACRM01000022.1| GENE 32 28987 - 29973 1457 328 aa, chain + ## HITS:1 COG:SA1402 KEGG:ns NR:ns ## COG: SA1402 COG4864 # Protein_GI_number: 15927153 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 21 327 21 327 329 511 92.0 1e-145 MLNIGIIIIAIIIIVALLLLFSFVPVGLWISAIAAGVKVSIATLVGMRLRRVSPRKVIGP LIKAHKAGLNLTTNQLESHYLAGGNVDRVVDANIAAQRADINLPFERGAAIDLAGRDVLE AVQMSVNPKVIETPFITGVAMNGIEVKAKARITVRANISRLVGGSGEETIIARVGEGIVS TIGSSEHHTQVLENPDNISKTVLSKGLDSGTAFEILSIDIADVDIGKNIGADLQTEQALA DKNIAQAKAEERRAMAVASEQEMKARVQEMRAKVVEAESEVPLAMAEALRKGNIGVKDYY NLKNVEADTGMRNAINKRTEQNDDESPN >gi|312979643|gb|ACRM01000022.1| GENE 33 29990 - 30685 868 231 aa, chain + ## HITS:1 COG:no KEGG:SH1344 NR:ns ## KEGG: SH1344 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 14 231 14 229 229 146 52.0 7e-34 MNIGILIFVISVIVTGISAMRDKSHEQRKNQMPPHKNTQSPTQNTPRKKGIFEQIEEAFN EMASEFDEEEQTKKTSSPKPSSKKETVHSDKNLKKNVTPEHHRGESKRFETKQSHTGKVP SKDRYSTSRERSQSEKNIKKQLEDSLSKELFNVRSEIDREKEKQLSLIEKKAKEIINDKY LSEKTKRYKLNQLLNSKSIEKNMTHQTFQFDNDPIVDGIIWQEILNKPKKL >gi|312979643|gb|ACRM01000022.1| GENE 34 30960 - 31907 1178 315 aa, chain + ## HITS:1 COG:SA1400 KEGG:ns NR:ns ## COG: SA1400 COG1702 # Protein_GI_number: 15927151 # Func_class: T Signal transduction mechanisms # Function: Phosphate starvation-inducible protein PhoH, predicted ATPase # Organism: Staphylococcus aureus N315 # 1 315 1 315 315 535 87.0 1e-152 MPGIIQIDNINHSQALIGNNDEHLKSIEEAFDVIIHARGQEIAVKGQVLEHVEKAELVLK NLLKVIELGHSITLKDVEAAIKMAKNDTIQYLLDLYDEEITKDAFGKTIRAKTMGQRLYI NAMKRNDLVFGIGPAGTGKTFLAVVYAAKQLRKGTVKRIVLTRPAVEAGESLGFLPGDLK EKVDPYLRPLYDGLNTVLGREQTARFIERGTIEIAPLAYMRGRTLDDAFVILDEAQNTTH AQMKMFLTRLGFGSKMVVTGDQTQIDLPKGVKSGLKEAIKNLRGVKGINIMELDQSDVVR HPLVSKIIERYEGDN >gi|312979643|gb|ACRM01000022.1| GENE 35 31908 - 32369 774 153 aa, chain + ## HITS:1 COG:SA1399 KEGG:ns NR:ns ## COG: SA1399 COG0319 # Protein_GI_number: 15927150 # Func_class: R General function prediction only # Function: Predicted metal-dependent hydrolase # Organism: Staphylococcus aureus N315 # 1 153 1 155 155 229 83.0 2e-60 MFTIDFNDHTNLVKDKWYHQIEDLINFAKEKENIHEDAELSVTFVDKDEIQEINKNYRDK DKVTDVISFALEEDEPDIIGLDIPRVLGDIIICTDVAKEQAESYNHSFERELGFLALHGF LHLLGYDHMNEEDEKEMFGRQKEILNAYGLTRD >gi|312979643|gb|ACRM01000022.1| GENE 36 32533 - 32712 95 59 aa, chain + ## HITS:1 COG:SA1398 KEGG:ns NR:ns ## COG: SA1398 COG0818 # Protein_GI_number: 15927149 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Diacylglycerol kinase # Organism: Staphylococcus aureus N315 # 1 56 54 109 114 60 75.0 9e-10 MVLTLEAVNTAIECVVDLVTSDYHELAKQAKDIAAFSVMVVSIFALIIGLIIFIPHIFF >gi|312979643|gb|ACRM01000022.1| GENE 37 32725 - 33129 495 134 aa, chain + ## HITS:1 COG:SA1397 KEGG:ns NR:ns ## COG: SA1397 COG0295 # Protein_GI_number: 15927148 # Func_class: F Nucleotide transport and metabolism # Function: Cytidine deaminase # Organism: Staphylococcus aureus N315 # 1 134 1 134 134 235 84.0 2e-62 MSYQSHYFQEVRKAQQRAYVPYSHFKVGAYLKTKDGRHFYGANVENAAYPATICAERSSL VAAISEGYRPGDFESITVTVDAEHPSSPCGTCRQVLKELCDDDMPVYMTNHKGEMIKSTV AELLPHGFSGKDLE >gi|312979643|gb|ACRM01000022.1| GENE 38 33130 - 34029 1078 299 aa, chain + ## HITS:1 COG:SA1396 KEGG:ns NR:ns ## COG: SA1396 COG1159 # Protein_GI_number: 15927147 # Func_class: R General function prediction only # Function: GTPase # Organism: Staphylococcus aureus N315 # 1 299 1 299 299 546 93.0 1e-155 MTEHKSGFVSIIGRPNVGKSTFMNRVIGHKIAIMSDKAQTTRNKIQGVMTREDAQIIFLD TPGIHKPKHKLGDYMMRVAKNTLSEIDAIMFMVNVNEDIGRGDEYIMEMLKNVKTPVFLV LNKIDLVHPDALMPKIEKYKTYMDFTEIVPISALEGLNVDHFIDVLKDYLPEGPKYYPDD QISDHPEQFVVGEIIREKILHLTSEEIPHAIGVNVDRMIKESEERVRIEATIFVERDSQK GIVIGKGGKKLKEVGKRARRDIEMLLGSKVYLELWVKVQKDWRNKVNFIRQMGYVEDQD >gi|312979643|gb|ACRM01000022.1| GENE 39 34063 - 34812 609 249 aa, chain + ## HITS:1 COG:SA1395 KEGG:ns NR:ns ## COG: SA1395 COG1381 # Protein_GI_number: 15927146 # Func_class: L Replication, recombination and repair # Function: Recombinational DNA repair protein (RecF pathway) # Organism: Staphylococcus aureus N315 # 1 249 1 249 250 340 66.0 1e-93 MLEKQKGIIIKSVDYGESDKIITILNEHGAKIPIMVRRAKKSKTGLQAHTQLFVYGLFIY NKWKGMGTLSSIDVINQYYQLRLDIFDSSYATLCVEAIDRSLEPDEVSLYHYKLLEFVLN KISEGNSAQLMSIIVLLKCMNKFGFDAFFNYCAITGDTDQSKLIAYSFKYDGTISETVLN NDPYALKLSNKTFYLLDILQKLPIDKMNHFNINQTLLDEMSELMIMLYKEYAGMYFKGQK LINQLKRLE >gi|312979643|gb|ACRM01000022.1| GENE 40 34885 - 36276 1722 463 aa, chain - ## HITS:1 COG:SA1394 KEGG:ns NR:ns ## COG: SA1394 COG0423 # Protein_GI_number: 15927145 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glycyl-tRNA synthetase (class II) # Organism: Staphylococcus aureus N315 # 1 463 1 463 463 900 93.0 0 MVKDMDTIVSLAKHRGFVFPGSDIYGGLSNTWDYGPLGVELKNNIKKAWWQKFITQSPYN VGIDAAILMNPKTWEASGHLGNFNDPMIDNKDSKIRYRADKLIEDYMQNEKGDENFIADG LSFEEMKRIIDDEGIVCPVSGTANWTDIRQFNLMFKTFQGVTEGSTNELFLRPETAQGIF VNYKNVQRSMRKKLPFGIGQIGKSFRNEITPGNFIFRTREFEQMELEFFCKPGEEIEWQN YWKTFASQWLKDLNINEENMRLRDHDEEELSHYSNATTDIEYKFPFGWGELWGIASRTDF DLKKHSEHSGEDFRYHDPETNEKYIPYCIEPSLGADRVTLAFLCDAYDEEGVEGSKDART VMHFHPALAPYKAAILPLSKKLSEEAIKIFEQLSSKFSVDFDESQSIGKRYRRQDEIGTP YCITFDFDSLEDNQVTVRDRDSMEQVRMPISELETFLAEKVKF >gi|312979643|gb|ACRM01000022.1| GENE 41 36740 - 37231 517 163 aa, chain + ## HITS:1 COG:SA1393 KEGG:ns NR:ns ## COG: SA1393 COG0517 # Protein_GI_number: 15927144 # Func_class: R General function prediction only # Function: FOG: CBS domain # Organism: Staphylococcus aureus N315 # 1 163 45 207 207 233 69.0 1e-61 MSGFIEARPRVGYYYSGKSKNKLISDHLRQYIIKDHMSLPVIVKEDTTIYDAICTIFLED TGTLFITNQKDELIGVSSRKDLLRASMIGQDIHTMPISIIMSRMPNIVYLKEEDLVIYAA SQMIDKEIDSIPVVRKKENSKYKVVGRISKTTITKLFVSLFKE >gi|312979643|gb|ACRM01000022.1| GENE 42 37242 - 38054 771 270 aa, chain + ## HITS:1 COG:SA1392 KEGG:ns NR:ns ## COG: SA1392 COG1806 # Protein_GI_number: 15927143 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 267 1 267 272 392 77.0 1e-109 MENIKIIIASDSIGDTAELVASACVAQFNPKACKHGFLRYPYIETFKDIDEVIQVAIDKN AIIVYTLVEPEIKAYMKKKVDDFSLKAVDIMGPLMTLLNQTHDEEPYNQPGRVHKLDDAY FKKIDAIEFAVKYDDGKDAKGLPKADIVLIGISRTSKTPLSQYLAHKSYKVMNIPLVPEV TPPDELFKINPTKCIALKISEDKLNLIRKQRLKQLGLGEHARYATEDRIKEEIQYFEKIV EKIGCPVIDVSDKAIEETANDVIQIIESKA >gi|312979643|gb|ACRM01000022.1| GENE 43 38118 - 39926 1721 602 aa, chain + ## HITS:1 COG:SA1391 KEGG:ns NR:ns ## COG: SA1391 COG0358 # Protein_GI_number: 15927142 # Func_class: L Replication, recombination and repair # Function: DNA primase (bacterial type) # Organism: Staphylococcus aureus N315 # 1 602 1 605 605 768 66.0 0 MRIEQSVINEIKEKTDILDLVSEYVKLEKRGRNYIGLCPFHDEKTPSFTVSEDKQICHCF GCKKGGNVFQFIQDIKDISFVEAVQELGERVNIKVDIGHSNPSTTQIASEDLKMIEMHEL INEYYMYALMKSVEGEEALNYLVNRGFTEELIKSRGIGYAPNNAHFCHDFLKQKGYDIEL AYEAGLLSRNEENFSYYDRFRDRIMFPLKNAQGRIVGFSGRTYNNQEPKYLNSPETPIFQ KRRLLYNLDSARKSIRKNDEVMLLEGFMDVIKADYAGLKTVVASMGTALSENHITVLKKL TSNITLMFDGDFAGQEATLKTGEHLLKHGLNVFVVQLPKNMDPDEYIVKFGKEKFIEFIN NEKKSFIIYKVQFYRDEIENNDLAYERHFKEITEDISFVKSSILKNKIVNDVADIFNIDA NTMMSNVHQQPEFISYEEDYIGNTNDNSNSNSQNLNIVFTHLNKSEKAQRALLKHFMMDK DVFLNYNRQLEANDFTNKYFQSIFKALTDYYSENDYYSISDLILYIEDKDIREAIIQLDD YELNREPYDLEIEEYISTLNENKYEDSIEELNHKLKEALRIGDVESQKYYLQMIVDKNKQ RM >gi|312979643|gb|ACRM01000022.1| GENE 44 40200 - 41306 1447 368 aa, chain + ## HITS:1 COG:SA1390 KEGG:ns NR:ns ## COG: SA1390 COG0568 # Protein_GI_number: 15927141 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) # Organism: Staphylococcus aureus N315 # 1 368 1 368 368 636 98.0 0 MSDNQVKIKKQTIDPTLTLEDVKKQLIEKGKKEGHLSHEEIAEKLQNFDMDSDQMDDFFD QLNDNDISLVNEKDSSDTDEKLNPNDLSAPPGVKINDPVRMYLKEIGRVNLLSAQEEIEL AKRIEQGDEVAKSRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDFSKG FKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGRDPAPEEIG EEMDLPPEKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQEAQSPSDHAAYELLKEQL EDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRS KRLKDFMD >gi|312979643|gb|ACRM01000022.1| GENE 45 41410 - 42099 824 229 aa, chain + ## HITS:1 COG:SA1389 KEGG:ns NR:ns ## COG: SA1389 COG2384 # Protein_GI_number: 15927140 # Func_class: R General function prediction only # Function: Predicted SAM-dependent methyltransferase # Organism: Staphylococcus aureus N315 # 1 225 1 225 225 270 66.0 2e-72 MISLNHRLKVVSQYLLSNSLADIGSDHAYLPIYALQHHLCDDAIAGEVIKGPYTAAKKNV AQHQLTQHIDVRLGDGLSILTEKDKVDNITICGMGGPLIAKILDEGKDKLAHHPRLILQS NIQTETLRKTLQHLNYDIIAEEILEEKGHIYEIVVSEWKENLNLLNKKSLKFGPILLNNK NGIFIKKWERELAALEHIRNQLNPIQHRERLEKIEEEISMIREVLYNEN >gi|312979643|gb|ACRM01000022.1| GENE 46 42089 - 43192 1244 367 aa, chain + ## HITS:1 COG:SA1388_1 KEGG:ns NR:ns ## COG: SA1388_1 COG0327 # Protein_GI_number: 15927139 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 172 64.0 1e-42 MKIKELMSIIDQHVPLKTAESWDNVGLLIGDDTKEITGILTALDCTMEVIEEAISKGYNT IIAHHPLIFKGIKSLVNDGYGKLIHMLIQNDIQLIALHTNLDNHIDGVNEMLAKKLNLTN IRFLNEEESFYYKVQTYIPEENLESFKYHINNIGLAKEGNYEYCFFESKGKGQFKPVGEA RPHIGELNRIEYVNEVKLEFMIRKDQLNIAKNAIINYHPYETPVYDFIKMTTSANYGLGK IGELNEPLNLEHFAKYAKAHLNIPSVRYTGPSEALIKTVAIIGGAGIGFETSAFKKGADV FVTGDIKHHDALDAKTNGIHLLDINHYSEYVMKEGLKGLLGQWLFSNESKQFNIEASEIN TDPFNYI >gi|312979643|gb|ACRM01000022.1| GENE 47 43217 - 44563 1462 448 aa, chain + ## HITS:1 COG:SA1387 KEGG:ns NR:ns ## COG: SA1387 COG0513 # Protein_GI_number: 15927138 # Func_class: L Replication, recombination and repair; K Transcription; J Translation, ribosomal structure and biogenesis # Function: Superfamily II DNA and RNA helicases # Organism: Staphylococcus aureus N315 # 1 448 1 448 448 723 82.0 0 MANHPFEIFNLNTNLIDAVKDLNFNKPTEIQNRIIPRIKKGTNLIGQSQTGTGKSHAFLL PLIDLINTDIKEPQSIVVAPTRELAQQLYKVASHLASFQSDIKVSLFIGGTDIEKDKQRT NQQPQLVIGTPTRINDLAQSGHLHIHKASYLIIDEADLLIDLGLIEDVDYIAARLDENAN IAVFSATIPKSLEPFLNKYLSHPEYVVVDNKSQNKKNIEFYLIPTKGTEKVDKTLQLIDI LNPYLCIIFCNSRENANELAQSLNESGIKVGMIHGGLTPRERKQQMKRIRNLDFQYVIAS DLASRGIDIEGVSHVVNFDVPNDIDFFTHRVGRTGRGNYKGVALTLYSPDEEHNISLIED KGYHFDNVDIKNGELKPIKAHNTRHKRERKDDHLTNQVKHKVRSKSKNKVKLGYKKKFKQ EVERMKRQERKQYSKQRSIQQRKNNKKG >gi|312979643|gb|ACRM01000022.1| GENE 48 44573 - 45463 1093 296 aa, chain + ## HITS:1 COG:SA1386 KEGG:ns NR:ns ## COG: SA1386 COG0648 # Protein_GI_number: 15927137 # Func_class: L Replication, recombination and repair # Function: Endonuclease IV # Organism: Staphylococcus aureus N315 # 1 296 1 296 296 500 84.0 1e-141 MLIGSHVSMSGKKMLEGSAEEAHQFGESTFMIYTGAPQNTRRKSINDLNIEKGHKVMEQY GLSNIVVHAPYIINIGNTTKPEVYELGVNFLQNEIERTQALGAKDIVLHPGAHVGAGADK GINQIIKGLNEVLTHDHDVRIALETMAGKGTEIGRSFEELARIIDGVTHNDRLSICFDTC HTHDAGYNIKNDFDGVLNEFDKIIGIDRIKVVHVNDSKNEQGAHKDRHENIGFGYIGFDA LNNVVHHEAFKDIPKILETPYVGEDKKNKKPPYRFEIEMLKSQIFDPKLKEKILNQ >gi|312979643|gb|ACRM01000022.1| GENE 49 45584 - 46360 261 258 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 1 217 7 218 318 105 28 2e-21 MNQPVFELKNIDYYFDNKQVLENINIRINRGDFLAIVGPNGAGKSTLLKVILGLLPLQRG EIYIDGKSYKKNTQSALKISYVSQKANAFTAGFPASVKEVVLSGLTKTKRIFQWFNKNDE QQVDNVLHRLNIHHLKNKNIAELSGGQQQRVLIARALISNPSVLVLDEPTNGIDAKHVNE FYATLQHLKEEGITIILVTHDIGVVVDTATKVACLNKHLHFHGSTEEFKSLDEVEISKIY GHPIKFVDHQHNRSCCEA >gi|312979643|gb|ACRM01000022.1| GENE 50 46417 - 47262 846 281 aa, chain + ## HITS:1 COG:SA1384 KEGG:ns NR:ns ## COG: SA1384 COG1108 # Protein_GI_number: 15927135 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Mn2+/Zn2+ transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 279 1 279 287 319 84.0 4e-87 MIEALLNFDFMRYSLLSGILIGFIAPLIGAFIVVRRLSLIADALSHVTLGGISFGMFIIT LSPVLVFINPMWFGIIFAIVGALLIEKLRTSYSNYQEIAIPIIMSAGIALSAIFISLADG FNQEIVGLLFGSISAVNLSDLVTITIISIVVLLFILLLYKELFILSFDEEYSKVINIPKW IQFLFITIVAMVISASMRVVGILLVSALITLPVAIAMRLTKGFKQLIILSIIIGECSVIL GLTLAFYINISPGGVIVVLLVLILGITMLLQKTKRTAKKEH >gi|312979643|gb|ACRM01000022.1| GENE 51 47266 - 47688 436 140 aa, chain + ## HITS:1 COG:SA1383 KEGG:ns NR:ns ## COG: SA1383 COG0735 # Protein_GI_number: 15927134 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 136 1 136 136 218 80.0 2e-57 MNTNDAIKILKDNGLKYTKKREDMINIFVNEDKYINAKYIQQQLDNDYPGISFDTIYRNL HLFKDLNIVESTELDGEMKFRIACTNHHHHHFICENCGDTKVIDFCPIEQVKQFLPNVDI HTHKLEVYGICETCHNKGIN >gi|312979643|gb|ACRM01000022.1| GENE 52 47920 - 48522 637 200 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15900660|ref|NP_345264.1| superoxide dismutase, manganese-dependent [Streptococcus pneumoniae TIGR4] # 1 198 1 200 201 249 59 6e-65 MAFELPNLPYAADALEPHIDKETMEIHHDKHHNTYVTKLNSAVEGTDLESKSIEEIVANL DSVPENIQTAVRNNGGGHLNHSLFWELLTPNSEEKGTVVDKIKEQWGSLDEFKKEFADKA AARFGSGWAWLVVNNGKLEIVTTPNQDNPITEGKTPILGLDVWEHAYYLKYQNKRPDYIS AFWNVVNWEKVDELYNAATK >gi|312979643|gb|ACRM01000022.1| GENE 53 48652 - 50697 2118 681 aa, chain + ## HITS:1 COG:SA1381 KEGG:ns NR:ns ## COG: SA1381 COG0768 # Protein_GI_number: 15927132 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Staphylococcus aureus N315 # 1 678 1 678 691 1058 78.0 0 MLKRLKEKSNDEKIKHTMNKRIRFIFGAIVLIFVLIVLRLGYLQIAQGAHYSQLVKNDEN ITVNESVPRGRILDRNGKILVDNASKLAITYTRSRKTSQQDMLNTAKKLAKLITMNTDKI TKQDKQDFWIQNHPKEVNKLMKKETTMLNNGSISQEQYDKQLHSKIKNTQLNSLSKHDLQ VLAIYREMSSGSTLDPQMIKNEDVSEKEYAAVSQQLDNLPGVNTSMDWDRKYPYGETLRS IFGSVSTPSEGIPKELTEQYLAKGYSRNDRVGKAYLEYQYEDILRGKKKQLKYTTDKSGK VISSKVINPGSRGNDLQLTIDIDLQKKVESLLENEIKTLRSQGATNMDNALVVVQNPKNG DILAMAGRQIDKNGELLDYDLGNFTGQFAVGSSVKGATLLTGYQNHTIKVGEEMIDEPLH FRGGLTKRSYFNQNGKVLINDKEALMHSSNVYMFKTALRLAGDPYSSGMSLPNNIEEAGQ KLRKGLNQVGLGVKTGIDLPNETIGQIEPLTNNPGNYLDLSIGQYDTYTPIQLSQYISTI ANNGYRVQPHIGLAIHDATNSDQVGPVKDKIKGNILNKVNNSQDEIDEVKQGFKMAFNEK DGTGYASFHKTVVPSAGKTGTAEVYQNGQSRVNSTYIGYAPIKDPKLAFSIVYTNQPVPP PWLNGGDLGRDIINYYFKNEK >gi|312979643|gb|ACRM01000022.1| GENE 54 50820 - 50969 267 49 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228476134|ref|ZP_04060842.1| ribosomal protein L33 [Staphylococcus hominis SK119] # 1 49 1 49 49 107 100 5e-22 MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCSRDNKQTLHRETK >gi|312979643|gb|ACRM01000022.1| GENE 55 51180 - 51731 610 183 aa, chain + ## HITS:1 COG:SA1380 KEGG:ns NR:ns ## COG: SA1380 COG0212 # Protein_GI_number: 15927130 # Func_class: H Coenzyme transport and metabolism # Function: 5-formyltetrahydrofolate cyclo-ligase # Organism: Staphylococcus aureus N315 # 1 175 1 175 179 146 50.0 3e-35 MGKKQIRKNILSQMKDFDKKNKRKADIWLMKQLIENEKFKKAHRIGIFLSMPHEINTYNI ITFALDNGKQIFVPDTDYRSRNMNFKQLLDLSSIATDDKGINYVNEDTSISNDMDLLIVP GIAFQTNGFRIGYGGGYYDKFLNQHDINSISLIYDFQISDFDVEKHDQPVDNLIICNTKF GRN >gi|312979643|gb|ACRM01000022.1| GENE 56 51731 - 53188 900 485 aa, chain + ## HITS:1 COG:SA1379_1 KEGG:ns NR:ns ## COG: SA1379_1 COG0705 # Protein_GI_number: 15927129 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein (homolog of Drosophila rhomboid) # Organism: Staphylococcus aureus N315 # 1 318 1 319 319 371 59.0 1e-102 MNIDKLYWKSIYYWIKYFNYKLEHIDKNTNEIWLSNKKKEELIVFRKEVSSTQEIRFDKS KINDHKENLQKKLGFKIKKVEFFYFLETSMNIDHLDEMHPTKLIYHSITNEKDLENTMPN FILKKRINKKEKKSSLDYKKRVLNTNLVDKYMMMFSPMTYTLIAINVLIWLYMKIYLNHF SDIKLLDVGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNMLSLFIFGKIVETIVGPYKM LGIYLISGLFGNFASLSFNISTISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVV LILIFVSLFMSNINLMAHLGGFIGGFLITLIGYYFHENRNLFWLFLILLLVLFVLLQIRI FSIKEENIYDKLIKDEMISYNYDDALSIVEHTINKGYDDDETYYLKGLITATKSSKAEAM ADWERGLRSHPNSALLNYELSIANRALNDNDKSLKYIKKALKIDGNNQSYKNLEKELKDS NESKN >gi|312979643|gb|ACRM01000022.1| GENE 57 53172 - 53375 62 67 aa, chain + ## HITS:1 COG:SA1378 KEGG:ns NR:ns ## COG: SA1378 COG4483 # Protein_GI_number: 15927128 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 67 1 67 67 82 80.0 1e-16 MNLKINNFYDVLQLLKRYGFIIYFKDKEDMYEMMQQEIHSLYNYDLLSKEEYLKCILIIN QRRNEHK >gi|312979643|gb|ACRM01000022.1| GENE 58 53372 - 54358 638 328 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|116517028|ref|YP_816079.1| glucokinase [Streptococcus pneumoniae D39] # 1 317 1 317 319 250 40 5e-65 MKNIILAADIGGTTCKLGIFDTKLERLHKWSIETDTSDHTGRTLLRQVFDSFKEATESYH FDLQNVIGVGIGVPGPVDFETGIVHGAVNLHWPGNVNVREIFSEFIDCPVYVDNDANVAA LGEKHKGAGQGANDVVAITLGTGLGGGIISNGEIVHGHNGSGAEIGHIRTDFDQRFNCNC GKSGCIETVASATGVVNLVNFYYPKLTFKSSILSLIKENKVTAKVVFDAAKAGDQFCIFI TEKVANHIAYLCSIISATSNPKYIVLGGGMSTAGLILIENIKTEYHNLTFTPAQKDTEIV QAKLGNDAGITGAAGLIKTYIIEKDGVK >gi|312979643|gb|ACRM01000022.1| GENE 59 54358 - 54681 539 107 aa, chain + ## HITS:1 COG:SA1376 KEGG:ns NR:ns ## COG: SA1376 COG0011 # Protein_GI_number: 15927126 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 107 1 107 109 170 84.0 7e-43 MAIVDVVVIPVGTEGPSVSKYIAEIQMKLEEFKKQGKIDYQLTPMNTLIEGDLKDLFEVV QAIHELPFDKGLNRVCTNIRIDDRRDKSRKMNDKLKSVQKHLDKQGE >gi|312979643|gb|ACRM01000022.1| GENE 60 54683 - 55309 888 208 aa, chain + ## HITS:1 COG:SA1375 KEGG:ns NR:ns ## COG: SA1375 COG0491 # Protein_GI_number: 15927125 # Func_class: R General function prediction only # Function: Zn-dependent hydrolases, including glyoxylases # Organism: Staphylococcus aureus N315 # 1 207 1 207 207 327 77.0 1e-89 MRISNLSLGLVDTNAYFIESDNSVLLVDPAGESDKIFKQLNQINKPLKAILLTHAHFDHI GALDDVLSKYDVPVYMHKEEFSFLTDPEKNGSSKFKQYGMPLTTSKAQPMALDEGNFTID EFKFNVIHTPGHSPGSLTYVFDDFAVVGDTLFNNGIGRTDLYRGDYETLVDSIKDKLFEL DGDLPLFPGHGQYTTVDDEQLNPYLDGQ >gi|312979643|gb|ACRM01000022.1| GENE 61 55359 - 56333 780 324 aa, chain + ## HITS:1 COG:SA1374 KEGG:ns NR:ns ## COG: SA1374 COG2804 # Protein_GI_number: 15927124 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB # Organism: Staphylococcus aureus N315 # 1 324 1 324 324 449 69.0 1e-126 MKLLFQEIINKAISKNASDVHFIPSEDKVHIKFRVNDRLETYEIFSNDIYEKLLIYMKFK ANLDVSTHQVAQSGRYTYHAKSIFYLRISTLPLSLGIESCVIRLIPQYFTSKREYKDFND FKPLMNKKQGLILLTGPTGSGKSTLMYQLVLYAFQELNLNVITIENPVEQLLKGITQVSV NHKAGIDYVNSFKAILRCDPDVILIGEIRDAEVAKCVIQASLSGHLVLTTMHSSNCKGTI LRLLEMGISVQEISQAINVISNQRLVTTTLNQRKLVCESITNNQIQYFFEHNHTLPETFN NLKEKLLSLSKEGLICEDVVEKYI >gi|312979643|gb|ACRM01000022.1| GENE 62 56305 - 57369 548 354 aa, chain + ## HITS:1 COG:SA1373 KEGG:ns NR:ns ## COG: SA1373 COG1459 # Protein_GI_number: 15927123 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, component PulF # Organism: Staphylococcus aureus N315 # 1 354 1 356 356 270 45.0 4e-72 MKMWLKNIFNKHSKVLSENQQIILLNNLNNLLKSGFTLLECFNFINLYFNYKNKNIANKI VKIIKTGGECDQILELIGYPKSIITQIQFAQKYGNINEALEEAMNYLKTNLQAKQRILKA IQYPIILIAIFITMLSILNYTVLPQFKHLYSMMDVKLNLSQTIITYLISHLPQIFLFVFS TLLTLSIIIFIFLNKLDISKKLTFISYIPIVRFYYSTIKTYQLANDLALFYKNGISIQQV VDMYIHLQNNSFLNYIGIVIQNELNRGINLPNILIKIPCYQYDLIQFIKQGEKNNKLDIE LKMYCQILIQRLQQTALKQSKMIQPIVFIFLGAFIVSLYLVIMLPMFQLMQNIK >gi|312979643|gb|ACRM01000022.1| GENE 63 57388 - 57699 302 103 aa, chain + ## HITS:1 COG:SA1372 KEGG:ns NR:ns ## COG: SA1372 COG4537 # Protein_GI_number: 15927122 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Competence protein ComGC # Organism: Staphylococcus aureus N315 # 1 102 1 102 103 120 80.0 8e-28 MKKFKHKLKAFTLIEMLLVLLIISVLLILIIPNIAKQMAHIQSTGCEAQVKMVNSQIEAY TLKHNRVPNSIENLITEGFIKQGQSSCKSGETISIKNGEAVAE >gi|312979643|gb|ACRM01000022.1| GENE 64 57743 - 58123 221 126 aa, chain + ## HITS:1 COG:SA1371 KEGG:ns NR:ns ## COG: SA1371 COG2165 # Protein_GI_number: 15927121 # Func_class: N Cell motility; U Intracellular trafficking, secretion, and vesicular transport # Function: Type II secretory pathway, pseudopilin PulG # Organism: Staphylococcus aureus N315 # 1 126 19 144 144 64 35.0 6e-11 MILTILLNATLRVNVFNNISLSDDIKATQFVNQLEYFKSKAMRNHQSITLLISKHSSIIK IIEAHGGRYNYNIEDGKIVEVKNLGKITFNKEGRTNQFGSLILKINQHQYKLIINIEKGR IRYFKI >gi|312979643|gb|ACRM01000022.1| GENE 65 58089 - 58397 205 102 aa, chain + ## HITS:1 COG:no KEGG:SH1376 NR:ns ## KEGG: SH1376 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 10 101 5 96 99 65 39.0 7e-10 MKKEELDILKFKAVLLIDSLFSLYIFTTIVFTLIPLLISLNHTLKREYQIVEIKQTIMSS INHYDKKTISKGINLGDYHIKLYSNKICGLHKETEIESCVKY >gi|312979643|gb|ACRM01000022.1| GENE 66 58315 - 58812 220 165 aa, chain + ## HITS:1 COG:no KEGG:SH1377 NR:ns ## KEGG: SH1377 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 5 165 3 163 163 87 37.0 1e-16 MIIILNFIPIKYVDFTKKLKSNHALNIKLKSFTLIEMLVSLFLTTMMLTFFPQLIKLTHS YLYESYNSYQTEYAFFQTNITQIISKKHHALIIKDKHTIIIDNESSKDYIEFKNNKLFYK INGNGNIVLLNNVINAEFQILPSNIIKLNLKIGDKNDYYEKNLFL >gi|312979643|gb|ACRM01000022.1| GENE 67 58814 - 58975 59 53 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKGYISSYTLFILSIYLIIISTYSAQYSIKLKTIHNIQIYYDSIISDKLKRGD >gi|312979643|gb|ACRM01000022.1| GENE 68 58977 - 59486 462 169 aa, chain + ## HITS:1 COG:SA1368 KEGG:ns NR:ns ## COG: SA1368 COG0703 # Protein_GI_number: 15927118 # Func_class: E Amino acid transport and metabolism # Function: Shikimate kinase # Organism: Staphylococcus aureus N315 # 1 166 1 168 174 179 57.0 1e-45 MTHSYLPLILTGFMGTGKSTIGEYLASKLYYSYIDLDTYIEMKEFKTIPDIFNEIGEKGF RKLEYNYLKDCIGKYDIISTGGGIIENDDSISLLKNKTVIWLDCDIDIIYHRIANDPHRP NAKNKSEKQLKDLYLSRVSRYNEIASTKVDSSKTIECVYKTILNHIPCE >gi|312979643|gb|ACRM01000022.1| GENE 69 59678 - 60769 1460 363 aa, chain + ## HITS:1 COG:SA1367 KEGG:ns NR:ns ## COG: SA1367 COG0404 # Protein_GI_number: 15927117 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system T protein (aminomethyltransferase) # Organism: Staphylococcus aureus N315 # 1 363 1 363 363 576 77.0 1e-164 MTSELKKTPLYETYVNSGAKIVEFGGWAMPVQFTSIKEEHNAVRYKVGMFDVSHMGEILI EGENASKFVQYLLSNDTTNLSETKAQYTALCNDEGGIIDDLVTYKIADNKYLLIVNAANT DKDFEWIQKHQSKFNAAVTNVSEQYGQLAIQGPQARTLVSELVDVDVSEMKPFEFKQNVT IFGKNVILSQSGYTGEDGFEIYCNSNDTVDIWNGFIDKGVVPCGLGARDTLRLEAGLPLH GQDLTESITPYEGGIGFAAKPLIEDEFIGKSVLKNQKENGSKRRTVGLELIDKGIARTGY TVMNLDGKEIGEITSGTQSPSSGKSIAMAIIDRDEFELGKELLVQVRKRQLKAKIVKKNQ IEK >gi|312979643|gb|ACRM01000022.1| GENE 70 60786 - 62138 1652 450 aa, chain + ## HITS:1 COG:SA1366 KEGG:ns NR:ns ## COG: SA1366 COG0403 # Protein_GI_number: 15927116 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain # Organism: Staphylococcus aureus N315 # 1 448 1 448 448 791 86.0 0 MSHRYIPLTDKDKKEMLETIGANSITELFGDIPKDILLNRDLNIDSAEAETSLLRRLNTI ANKNITKETHVSFLGAGVYDHYTPAVVDAMISRSEFYTAYTPYQPEISQGELQAIFEFQT LICELTQMDVANSSMYDGITSFAEACILAFNHTKKNKIVVSKGLHYQALQVLKTYIKVRK EFEIVEVDLNGTITDLEKLEQAIDDDTAAVAVQYPNFYGTIEDLEKIHSYIENKKALFIV YSNPLALGVLTPPGQFGADIVVGDTQPFGIPTQFGGPHCGYFATTKKLMRKVPGRLVGQT QDDEGNRGFVLTLQAREQHIRRDKATSNICSNQALNALASSIAMSALGKQGIYDIAVQNL EHANYAKNQFKNNSFEVLDGTSFNEFVVKFDQPIKNVNKKLAEHGFIGGFDLGEVSSDFD NHMLIAVTELRTKEEIDTFVEKAGELNDSK >gi|312979643|gb|ACRM01000022.1| GENE 71 62125 - 63603 1756 492 aa, chain + ## HITS:1 COG:SA1365 KEGG:ns NR:ns ## COG: SA1365 COG1003 # Protein_GI_number: 15927115 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain # Organism: Staphylococcus aureus N315 # 4 491 3 490 490 867 91.0 0 MTVSKSSPLIFERSREGRYAYSLPQSDIKTDSVERILDDKFIRKNKAEFPEVAELDLVRH YTELSNKNFGVDSGFYPLGSCTMKYNPKINEKVARISGFAESHPLQEEEQIQGSLEIIYS LQEELKEITGMDEVTLQPAAGAHGEWTALMIFKAYHIKNGEGHRNEVIVPDSAHGTNPAS ASFAGFKSVTVKSNERGEVDIEDLKRVVNENTAAIMLTNPNTLGIFEKNIMEIREIVHEA GGLLYYDGANLNAIMDKVRPGDMGFDAVHLNLHKTFTGPHGGGGPGSGPVGVKKELASYL PKPMVIKDGDTFKYDNDIENSIGRVKPFYGNFGIYLRAYTYIRTMGAQGLKEVSEAAVLN ANYIKARLKDRYEIPYEQYCKHEFVLSGSKQKEYGVRTLDMAKRLLDFGVHPPTIYFPLN VEEGMMIEPTETESKETLDYFIDAMLQIADEVESNPDNVLEAPHTTIIDRLDETTAARKP ILKFEDLHQEKL >gi|312979643|gb|ACRM01000022.1| GENE 72 63687 - 64019 411 110 aa, chain - ## HITS:1 COG:SA1364 KEGG:ns NR:ns ## COG: SA1364 COG0607 # Protein_GI_number: 15927114 # Func_class: P Inorganic ion transport and metabolism # Function: Rhodanese-related sulfurtransferase # Organism: Staphylococcus aureus N315 # 1 110 19 128 128 186 86.0 1e-47 MVGNFFLNRRAVTELDQNEFHKGLRKAQVIDVREKVDYDYGHINGARNIPISMFRQRFQG LRKDQPVYLCDANGIASYRAARILKKNGYKDLYMLKGGYKKWTGKIKTKK >gi|312979643|gb|ACRM01000022.1| GENE 73 64224 - 65054 1042 276 aa, chain + ## HITS:1 COG:SA1363 KEGG:ns NR:ns ## COG: SA1363 COG0095 # Protein_GI_number: 15927113 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Staphylococcus aureus N315 # 1 276 1 276 276 489 85.0 1e-138 MTETWNFINTGSHDPYYNMAMDEALLNFVSRGEIDPVVRFYTWDPATLSVGYFQRLKKEI DIDKVKEKGFGLVRRQTGGRGVLHDKELTYSVIVPESHPNMPSTITEAYRVISEGLLEGF KLLGFDAYFAIPRSKEEREKLKQPRSAVCFDAPSWYELVVEGRKIAGSAQTRQKGVILQH GSLLQDVDVDELFDMFIFKNDRLKEKMKKAFVDKAVAINDISDRHISIEEMEKAFEEGFK KGLNIEFKPLSLTENQLAEVKVLEEKYRSEEWLYKK >gi|312979643|gb|ACRM01000022.1| GENE 74 65106 - 65321 80 71 aa, chain - ## HITS:1 COG:no KEGG:SH1384 NR:ns ## KEGG: SH1384 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 71 1 71 71 62 77.0 5e-09 MKNIIFYFVLIIAAIGLLLNLNIFVMTFMKSIFTLIMIALIIYFIYYFFFLTEDQRKYRR AVRKYKKRQRK >gi|312979643|gb|ACRM01000022.1| GENE 75 65338 - 65919 557 193 aa, chain - ## HITS:1 COG:no KEGG:SH1385 NR:ns ## KEGG: SH1385 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 193 1 193 193 169 70.0 5e-41 MKRLLTILGASLFLVGCGSQNLGPLEDKTTNLRDENHNLKLKIQQLNQDINNQKSQLEAL NKDKKNVSKTVDNNNEANFLQASSNYYKDIAKIIDKFNQLDLNKTKKNDKNQNLEKLNSL SNDIDDAYSKYKSDTDKGNISNDNTNKDKNIKQINKNLQSGFKDIKNGYESNNKKKINQG KMKLSQINVSSSS >gi|312979643|gb|ACRM01000022.1| GENE 76 66020 - 67078 1273 352 aa, chain + ## HITS:1 COG:SA1360 KEGG:ns NR:ns ## COG: SA1360 COG0006 # Protein_GI_number: 15927110 # Func_class: E Amino acid transport and metabolism # Function: Xaa-Pro aminopeptidase # Organism: Staphylococcus aureus N315 # 1 352 1 352 353 508 70.0 1e-144 MDKLAKVRHILESENLDALVILSDYNRRYISDFTGTSGALIISNNENKLITDFRYIEQAT NQATHFEIVNRRSGIIDEIKEIIENKQYKTVGFEGHLVSYDTFRELSQIDTNYVSIGNAI EKIREVKSPEEIDKIKYAAKIVDDTYNYILNIAKVGMTERELKALLESKMLELGADGPSF DTIVASGYRGALPHGVASDKVIEKGDMITLDFGAYYRGYCSDITRTFAIGEPDKKLKEIY NIVLQSQIKAIEEIKPGMTTKEADALSRDYIKAHGYGNEFGHSLGHGIGLDIHEGPVLSK NTNDTVQVNNCVTIEPGIYVDGLGGVRIEDDILITENGCEVFTKCTKDLIIL >gi|312979643|gb|ACRM01000022.1| GENE 77 67106 - 67663 824 185 aa, chain + ## HITS:1 COG:SA1359 KEGG:ns NR:ns ## COG: SA1359 COG0231 # Protein_GI_number: 15927109 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) # Organism: Staphylococcus aureus N315 # 1 185 1 185 185 322 91.0 2e-88 MISVNDFKTGLTISVDNGIWKVIDFQHVKPGKGSAFVRSKLRNLRTGAIQEKTFRAGEKV EQAMIENRRMQYLYADGDTHVFMDNETFDQTELSGDYLKDELKYLKANMEVQIQSYEGET IGIELPKTVELEVTETEPGIKGDTATGATKSATVETGYTLNVPLFVNEGDVLVINTSDGS YISRA >gi|312979643|gb|ACRM01000022.1| GENE 78 67922 - 68398 707 158 aa, chain + ## HITS:1 COG:SA1358 KEGG:ns NR:ns ## COG: SA1358 COG0511 # Protein_GI_number: 15927108 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxyl carrier protein # Organism: Staphylococcus aureus N315 # 1 158 1 154 154 171 71.0 3e-43 MNFKEIKELIQILDESSLTEINIEDNKGSVVNLKKQKETEIITPQYSQQPTVMASQPSVQ TPMANEMSQTSEVNQENETSNYETINAPMVGTFYKSPSPEEEAYVQVGDKVTNDSTVCIL EAMKLFNEIQAEVTGEIVEILVEDGQMVEYGQPLFKVK >gi|312979643|gb|ACRM01000022.1| GENE 79 68398 - 69753 1627 451 aa, chain + ## HITS:1 COG:SA1357 KEGG:ns NR:ns ## COG: SA1357 COG0439 # Protein_GI_number: 15927107 # Func_class: I Lipid transport and metabolism # Function: Biotin carboxylase # Organism: Staphylococcus aureus N315 # 1 447 1 447 451 803 87.0 0 MKKVLIANRGEIAVRIIRACHDLGIQTVAIYSEGDKDALHTQIADEAYCVGPTQSKDSYL NIPNILSIATSTGCEAIHPGYGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDVAKA EMIAANVPVVPGSDGLIDSIEDAKKVAKQIGYPVIIKATAGGGGKGIRVARNENDLENGY RMTQQEAQTAFGNGGLYLEKFIENFRHIEIQVIGDQFGNVIHLGERDCTIQRRMQKLVEE SPSPILTDEKRKEMGKAAIRAAKAVNYENAGTIEFIYDLNENKFYFMEMNTRIQVEHPVT EMVTGVDLVKLQLKVAMGEPLPYTQDDITINGHAIEYRINAENPYKNFMPSPGKITQYLA PGGYGVRIESACYTNYTIPPYYDSMVAKLIVHEPTRDEAIMTGIRALSEYLILGIDTTIP FHLKLMNNDIFKSGDYNTNFLEKYNIMAESE >gi|312979643|gb|ACRM01000022.1| GENE 80 69766 - 70125 397 119 aa, chain + ## HITS:1 COG:SA1356 KEGG:ns NR:ns ## COG: SA1356 COG1302 # Protein_GI_number: 15927106 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 119 1 119 120 145 70.0 2e-35 MVNVADYSHANLGKVEIVPEVTSVIASIAVSEVEGVTGHFYELKKSNIEKISRKNLNKNL KVNTKDDGIHIDVYCSIKHGIKIAKVASKIQTSIFNSIKTMTAIEPKEINIHIMHITIE >gi|312979643|gb|ACRM01000022.1| GENE 81 70158 - 70544 395 128 aa, chain + ## HITS:1 COG:SA1355 KEGG:ns NR:ns ## COG: SA1355 COG0781 # Protein_GI_number: 15927105 # Func_class: K Transcription # Function: Transcription termination factor # Organism: Staphylococcus aureus N315 # 1 128 1 128 129 206 84.0 1e-53 MSRKESRKQAFQTLFQLEMKNTDLTINEAINFIKDDYPDLDFEFIHWLVTGVKDHEQVLD QSIEPKLKDWSIQRLLKTDRIILRMATFELLHSDTPPKVIINEAVELTKQFSDEGHYKFI NGVLSNIK >gi|312979643|gb|ACRM01000022.1| GENE 82 70565 - 71902 1253 445 aa, chain + ## HITS:1 COG:SA1354 KEGG:ns NR:ns ## COG: SA1354 COG1570 # Protein_GI_number: 15927104 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII, large subunit # Organism: Staphylococcus aureus N315 # 1 445 1 445 445 606 71.0 1e-173 MSEYLSVSTLTKYIKYKFDQDPHLQSILLKGELSNFKKHSSGHLYFNVKDKNSVISAMMF KGNASKLTFDPKEGDEVLLEARVSVYERRGNYQIYVNKMEIDGIGNLYQKLEQLKEKLNK QGIFNQNHKKAIPRFPKKIAILTADTGAAIRDIHTIIDSRYPLVEKISISTLVQGINAKN DIIEKIKYADTLGVDTIILGRGGGSIEDLWNFNEEEVVRAIYECHTPIISAVGHETDFTL SDFVADMRAATPTQAAVIATPDQYELIQQIHQYRFSLTKSIKQLIEKQHKQLDYLSSYYK FKQPTLLYEQQIQRRDDLEKKLTQRLTLNIEKKRNNITVLRQHFNIRRLNDSIVQYQKMI RNNENRLINLTYNLINHNKANLKNKIEQLNQLSPTNTMLRGYSIINKDNKVITSTHDLNE QDEITLSMKDGNIDAIVKKVRCEDE >gi|312979643|gb|ACRM01000022.1| GENE 83 71895 - 72125 322 76 aa, chain + ## HITS:1 COG:SA1353 KEGG:ns NR:ns ## COG: SA1353 COG1722 # Protein_GI_number: 15927103 # Func_class: L Replication, recombination and repair # Function: Exonuclease VII small subunit # Organism: Staphylococcus aureus N315 # 1 76 1 76 76 63 77.0 8e-11 MSKEQQSFEEMMKELESIVQKLDNETVSLEESLDLYQRGMKLSSACDKTLKDAENKVNQL IKEEAKDEDDVEEINE >gi|312979643|gb|ACRM01000022.1| GENE 84 72103 - 72984 926 293 aa, chain + ## HITS:1 COG:SA1352 KEGG:ns NR:ns ## COG: SA1352 COG0142 # Protein_GI_number: 15927102 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Staphylococcus aureus N315 # 1 293 1 293 293 362 68.0 1e-100 MLKKSMNELIEIINNNLDGIIKSSPLNTKLEESMQYSLDAGGKRIRPVLVLLTLEVLNEN YKKGLQTALALEMIHTYSLIHDDLPAMDNDDFRRGKLTNHKVYGEWKAILAGDALLTKSF ELIANDKNLDAETKVKVISRLAHDSGNLGMVGGQTLDMDSENTPIELHTLEQIHKAKTGA LLKFSILSAADIANVNKEILNTLDCFSEHLGLMFQIKDDLLDVYGDEKKLGKKVGSDVEN HKSTYVSLLGKSGAEEKLKYHKDAAIDTINQLKPQYDVEPLLEIVDLFYSRDH >gi|312979643|gb|ACRM01000022.1| GENE 85 73246 - 73698 440 150 aa, chain + ## HITS:1 COG:SA1351 KEGG:ns NR:ns ## COG: SA1351 COG1438 # Protein_GI_number: 15927101 # Func_class: K Transcription # Function: Arginine repressor # Organism: Staphylococcus aureus N315 # 1 150 1 150 150 264 89.0 4e-71 MAKKSVRHIKIREIISSEQIETQDELVKRLNEYDLNVTQATVSRDIKELQLIKVPASSGQ YVYSLPNDRKYHPLEKLGRYLMDSFVNIEGTGNLLVLKTLPGNAQSIGAILDQIDWDEVL GTICGDDTCLLICRDEEASHTIKTRIFNLL >gi|312979643|gb|ACRM01000022.1| GENE 86 73714 - 75387 1874 557 aa, chain + ## HITS:1 COG:SA1350 KEGG:ns NR:ns ## COG: SA1350 COG0497 # Protein_GI_number: 15927100 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 557 1 557 559 795 83.0 0 MLQTLSIKQFAIIDELEIHFSDGLTVLSGETGSGKSIIIDAIGQLIGMRASSDFVRHGEK KAIIEGIFDIDNSKEAISVLNELDIDIDEDFLLVKREIFSSGKSICRINNQIVTLQDLRK VMQELLDIHGQHETQTLLKQKYHLKLLDDYAENQYSSVKEQYETTFNEYKEKKKELEELQ SADQALLQRLDLMKFQFEELQEASLKEGEITQLESDIKRIQNSEKLSLALNNAHVTLTDE HAITDRLYELSNHLQTIDDIIPGRFKKLKEDIDQFYYTLEDAKHELYDEMSNTEFDEQLL NELESRMNLLNNLKRKYGKNIDELITYQSKLENEIAKIENYEESTSQLKEEIDLLYEKVI KYGQSLSKERRIVARTLREHIVAEIQNLQMKEANLEISFQPLETPTIEGIEFVEFLISPN KGEPLKSLNKIASGGELSRIMLALKSIFVESRGQTAILFDEVDSGVSGQAAQKMAEKMRD IAKYIQVICISHLPQVASMSDHHLLISKMSKNDRTTTQVKELKKEDKIDEIARMISGASV TELTRENAREMIAQNHK >gi|312979643|gb|ACRM01000022.1| GENE 87 75530 - 76954 698 474 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 5 474 3 458 458 273 34 5e-72 MSEKQYDLVVLGGGTAGYVAAIRASQLGKKVAIVEKSLLGGTCLHKGCIPTKALLKSAEV TRTVRQSSEFGIDTKGLHINFEKMMNRKTDIVNQMHNGVQSLMQKNHIDIYNGIGRIMGT SIFSPQSGTISVEYEDGSSELLPNQFVLIATGSRPQTLPFLKINHRNILSSDDILQIDTL PDSIAIVGGGVIGLEFASLLTDLNVNVKVIEAGKRILPSDSKSISTFLKDSLIERGVEFF EDCQLSEENIIHKNDVIQIHINEKTTITVDKILVAVGRVPNTSDIGIQNTKIQLDTHGYI KVNEFQQTSDKHLYAAGDCIGTLQLAHVASKEGITAVEHMFNDHPLPVNYHLMPKCVYTY PEVASIGLNIETAKSQNIKATSYKVPFNAIGKAVIEETKNKRGFCEIILNKDNGEIIGLS MVGPHVTELINEVALLQFMNGSTLELGLTTHAHPSLSEILMELGLKAENRTIHV >gi|312979643|gb|ACRM01000022.1| GENE 88 76969 - 77970 1314 333 aa, chain + ## HITS:1 COG:SA1348 KEGG:ns NR:ns ## COG: SA1348 COG1071 # Protein_GI_number: 15927098 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Staphylococcus aureus N315 # 1 325 1 325 330 533 80.0 1e-151 MIDYKSVGLTDEDLREIYKWMDLGRKLDERLWLLNRAGKIPFVVSGQGQEATQIGMAYAM KEGDISSPYYRDLAFVTYMGISPYDTMLASFGKKDDINSGGKQMPSHFSHREKGILSQSS PVATQIPHSVGAALALKMNQQSNIATATVGEGSSNQGDFHEGLNFAGVHNLPFVCVIINN KYAISVPDSLQYAATHLSDRAIGYGIHGETVDGNDPIAMYKAMKEARERALNGEGATLIE AITTRMTPHSSDDDDTYRSKEERDAFKTSDCNLKFKNELLDLGIIDEDWLNELDNAHKSI IDKATKDAENAQYPDVEETYQYVYDPEGDIFND >gi|312979643|gb|ACRM01000022.1| GENE 89 77963 - 78946 1187 327 aa, chain + ## HITS:1 COG:SA1347 KEGG:ns NR:ns ## COG: SA1347 COG0022 # Protein_GI_number: 15927097 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Staphylococcus aureus N315 # 1 327 1 327 327 589 85.0 1e-168 MTKMSYIEAIQNAQDLAMEKDNNIFILGEDVGRKGGVFGATRGLQEKYGELRVIDTPLAE SNIIGTAIGAAMLGKRPIAEIQFADFILPAVNQIISEAAKMRYRSNNDWQCPLTVRAPFG GGVHGGLYHSQSIESIFASTPGLTIVIPSTPYDAKGLLLSSIESNDPVLFFEHKKAYRFL KEEVPDSYYTIPLGKADVKREGDNITVFTYGLCVNYCIQAADILEADGINVEVVDLRTVY PLDKTTIIERAKRNGKILLVTEDNLEGSVMSEVSAIIAEHCLFELDAPIMRLAGPDVPSM PFSPNLENEVMMNPDKILKKMRELAQF >gi|312979643|gb|ACRM01000022.1| GENE 90 78959 - 80236 1443 425 aa, chain + ## HITS:1 COG:SA1346 KEGG:ns NR:ns ## COG: SA1346 COG0508 # Protein_GI_number: 15927096 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 425 1 424 424 527 69.0 1e-149 MDVKMPKLGESVHEGTIEQWLVSEGDHVDEYEPLCEVVTDKVTAEVPSTISGTITELIAT EGETIEINQIICKIQPDDTSLNSNQDDTNETPSQTQSNSVKSQSKPSNTNQSSTNSINNG RFSPVVFKIASENDIDLSQVPGTGFEGRVTKKDIETYIQENNQQDLNETPTTQITNHSET SSRNNNASSNEPLDDYTVPVKGVRKAIAQNMVTSATEIPHGWMMIEVDATNLVKTRNHYK TVFKKQEGYNLTFFAFFVKAVAEALKSNPLLNSSWDGNEIIIHKDINISIAVADEDKLYV PVIKNADEKSIKGIAREINQLAQKARNQQLTQEDMTGGTFTVNNTGTFGSVSSMGIINHP QAAILQVESIVKKPVVIDDMIAIRNMVNLCISIDHRILDGVQTGRFMSQVKNRIESYSIE TTNIY >gi|312979643|gb|ACRM01000022.1| GENE 91 80334 - 80771 619 145 aa, chain + ## HITS:1 COG:no KEGG:SH1401 NR:ns ## KEGG: SH1401 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 145 1 145 145 272 91.0 2e-72 MDLNFDLYMNGVVEQARNEIESAGYEQLTTSDEVDKVFKQDGTTLVMINSVCGCAGGIAR PVASHALHYDKLPNRLVTVFAGQDKEATQQAREYFEGYAPSSPSFALMKDGKITEMIERH QIEGHDVMDVINQLQKLFDKYCEER >gi|312979643|gb|ACRM01000022.1| GENE 92 80784 - 81761 1054 325 aa, chain + ## HITS:1 COG:SA1344 KEGG:ns NR:ns ## COG: SA1344 COG4129 # Protein_GI_number: 15927094 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 325 1 325 326 426 70.0 1e-119 MLTLNPYRIGFRTLKTAVGITLGVILAKWIGLDNYASSAILIVLCIKHTKVHSLQAIGSR FVSCLLMLFFGSFIFNLLGQNAVVLGLIVLLFIPLTVMLNVQEGVVTSCVILLHVFNAKV IGLHLIINEILLLIIGLGIAFLMNLIMPSLDNTLGNFKKKIENEIKTIFKQYSEACLNIN KQLSISFDTLENNIRKAKSIAFRDVKNHFVRNENSYYHYFDMREEQLEILRRIQTLIHNT SSNDPLIETVAHLMAEIGDNVNSNDYTVLRLHSLYEIRLKLDELPLPESHQSLKSRASMM QILNELEEYLNIKSHFGSLKLHSEI >gi|312979643|gb|ACRM01000022.1| GENE 93 82176 - 83300 1516 374 aa, chain + ## HITS:1 COG:SA1343 KEGG:ns NR:ns ## COG: SA1343 COG2195 # Protein_GI_number: 15927093 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Staphylococcus aureus N315 # 1 374 1 374 377 493 68.0 1e-139 MINSRRLLNTFLELVQINSETGNEETIQPILKKKFIDLGLNVVEDNASKREWLGANNLIC TLPSSEGKEHVSKIYFTSHMDTVVPGINVKPILKEDGYVYSDGTTVLGADDKAGIAALLE MIQTINEQELPHGQIQFIITVGEEAGLKGAKELDQNLIDAEFGYAVDASQAVGTTVVGAP TQMIINTTIYGKTAHASKPNQGISAIHIAAKAINKMHLGQIDQDTTANIGKFYGGSATNI VADKVILEGEARSHNDKSLEYQVNHMKETFETTAKELGGKANVEISKSYPGFRRNDSETV TQYAIKSAKTLGLSGKTVIAGGGSDGSIINTYHIPTVILGVGYEHIHTTSERIPVAALNQ LTSQLIKIVELVAK >gi|312979643|gb|ACRM01000022.1| GENE 94 83378 - 84784 1772 468 aa, chain + ## HITS:1 COG:SA1342 KEGG:ns NR:ns ## COG: SA1342 COG0362 # Protein_GI_number: 15927092 # Func_class: G Carbohydrate transport and metabolism # Function: 6-phosphogluconate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 468 1 468 468 862 90.0 0 MTQQIGVVGLAVMGKNLAWNIESRGYSVSVYNRSSDKTDLMIKESEGKQIHPTYSLEDFV NSLEKPRKILLMVKAGPATDATIDSLLPLLDDDDILIDGGNTNYQDTIRRNKALAESGIN FIGMGVSGGEIGALTGPSLMPGGQQEAYNKVSDILDAIAAKAKDGAACVEYIGPNGAGHY VKMVHNGIEYADMQLIAESYAMMKELLGMSHEEISKTFKEWNAGELESYLIEITGDIFTK LDENNEPLVEKILDTAGQKGTGKWTSINALELGIPLTIITESVFARFISSIKEERVKASK VLSGPKSNFDGNREEFLEKIRQALYMSKICSYAQGFAQMRKASNENEWNLKLGDLAMIWR EGCIIRAQFLQKIKDAYDNNSGLQNLLLDPYFKGIVTEYQDALREVVATGVKNGVPTPGF SASINYYDSYRSEDLPANLIQAQRDYFGAHTYERKDKDGIFHTQWTEE >gi|312979643|gb|ACRM01000022.1| GENE 95 85147 - 86793 1688 548 aa, chain + ## HITS:1 COG:SA1338 KEGG:ns NR:ns ## COG: SA1338 COG0366 # Protein_GI_number: 15927088 # Func_class: G Carbohydrate transport and metabolism # Function: Glycosidases # Organism: Staphylococcus aureus N315 # 1 548 1 548 549 877 79.0 0 MEKNWWKEAVAYQVYPRSFNDSNNDGIGDLPGMVEKLDYLKDLGIDVIWLSPMYKSPNDD NGYDISDYQDIMEEFGTMEDFNHLLSEVHKRGMKLILDLVVNHTSDEHPWFIESRSSKDN PKRDWYIWADPKPDGSEPNNWESIFNGSTWEYDDTTKQYYFHLFSKKQPDLNWSNPDVRE AVFKMMNWWFEKGIDGFRVDAITHIKKTFEAGDLPVPKGKQYAPAFDVDMNQPGIQDWLQ EMKDKSLSHYDIMTVGEANGVNPDNAKEWVGEKEGKFNMIFQFEHLGLWSTGDSKFDVLS YKNVLNRWQKQLEGIGWNALFIENHDQPRRVSTWGDDKKYWFESATSHAVVYFLQQGTPF IYQGQEIGMTNYPFESIETFNDVAVKTEYQIVKSQGGDVNQLLDKYKMENRDNSRTPMQW TNEVNGGFTEGTPWFPANPNYKTINVAQQSEDSDSVLNFYKRLIKIKKSDDIYTYGEFNL IDDANENIFAYTRKLNNKTVLVAGNLTDHVASLNLPFEVEPSQIKLHNYKNDLDITNMRP FEAFVAEL >gi|312979643|gb|ACRM01000022.1| GENE 96 86847 - 87713 825 288 aa, chain - ## HITS:1 COG:SA1337 KEGG:ns NR:ns ## COG: SA1337 COG2207 # Protein_GI_number: 15927087 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 286 1 286 288 446 76.0 1e-125 MDVIKQIQQAIVYIEDHLLEPFNLQDLSDYVGLSPYHLDQSFKMIVGQPPESYAHSRKMT EAAKEMIQSSSRLVDVAKRYNYLSSNDFANDFSDFHGISPIQASTKKEELKMNERLYIKL TTTERAPYPYRLETTKDTPLVGYVKYIEANQLSNPYKVPDFLEDLYLDGKIKELKRYNNI SPYELFVITCPLDEGVELFVGVPSERYPAHLESRLLPGRHYAKFNLQGQVDYTVNEAWYY IESSLQLTLPYEKNSLYVEIYPFDLSFEDPFTKIQLWLPIKQETYDIE >gi|312979643|gb|ACRM01000022.1| GENE 97 87925 - 89409 1534 494 aa, chain - ## HITS:1 COG:SA1336 KEGG:ns NR:ns ## COG: SA1336 COG0364 # Protein_GI_number: 15927086 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate 1-dehydrogenase # Organism: Staphylococcus aureus N315 # 1 494 1 494 494 874 86.0 0 MNTHTKHIPCLITIFGATGDLSHRKLFTSLFHLYQQDNLDDHIAIIGVGRRDYTNDFFRE QVKQSIQTHVKDTDRLDEFIEHVFYFKNDVNEEESYHELLTFSNELDDTFKLEGNRLFYL AMAPQFFGPISDYLKASGLTETKGFKRLVIEKPFGSDFKSAEKLNNQLRQSFKEEEIYRI DHYLGKDMVQNIEVLRFANAMFEPLWNNKYISNIQITSSEILGVEDRGGYYESSGALKDM VQNHMLQMVALLAMEAPISLKSEDIRAEKVKVLKSLRQLKPEEVNQNFVRGQYGEGTIND QRVIAYRDEDRVASDSNTPTFVSGRLTIDNFRWAGVPFYIRTGKRMKSKCIQVVVEFKEV PMNLYYQTDRLLDSNLLVINIQPNEGISLHLNAKKSIQGIETKPVQLSYAMSAQDKMNTV DAYENLLFDCLKGDATNFTHWEELKSTWKFVDAIQEHWTMIDPNFPNYKSGTNGPIESDL LLSRDGNHWWDDIQ >gi|312979643|gb|ACRM01000022.1| GENE 98 89655 - 90575 964 306 aa, chain + ## HITS:1 COG:SA1335 KEGG:ns NR:ns ## COG: SA1335 COG1234 # Protein_GI_number: 15927085 # Func_class: R General function prediction only # Function: Metal-dependent hydrolases of the beta-lactamase superfamily III # Organism: Staphylococcus aureus N315 # 1 305 1 305 306 477 75.0 1e-134 MEVTFFGTSAGLPTKDRNTQAIALNLEPYSNSVWLFDVGEGTQHQILHHSIKLGKVDHIF ITHMHGDHIFGLPGLLTSRSFQGGEDKPLTLIGPTGLQQFIETALKLSESHLNYPITYIE IDNNFTYHHHGFTVSSRLLNHGIPSYGYRIEAPTTPGTIDVTALKAIGLEPGPKYQEVKM FDTFEYNNQIYLSKDFKGPAKPGPIVTIFGDTKPCDNEYILAENADIMIHEATYIEGDKI LANNYHHSHIDDVFRLIHQSNVKKSFITHLSNRYNLEDIEEINRALKEMKDTPNFEFVKD FDTFKF >gi|312979643|gb|ACRM01000022.1| GENE 99 90664 - 91479 949 271 aa, chain - ## HITS:1 COG:SA1334 KEGG:ns NR:ns ## COG: SA1334 COG0345 # Protein_GI_number: 15927084 # Func_class: E Amino acid transport and metabolism # Function: Pyrroline-5-carboxylate reductase # Organism: Staphylococcus aureus N315 # 1 271 1 271 271 416 78.0 1e-116 MKLVFYGAGNMAQAIFKGIIDSKILNHNDIYLTNKSNENTLKLFAKELGVKYSYDDAFLL KDADYVFLGTKPHDFETVASRIKSHIQSDHRFISIMAGLSINYIREKLETNNPVARIMPN TNAQVGHSVTGISFSGNFDPHSKDEVTELISAFGSVIEVDEEYLHQVTAITGSGPAFLYH VFEQYVKAGTSLGLEKKQVEESIKNLIIGTSKMIERSDLSMEQLRKNITSKGGTTQAGLN ELDRHDIESIFKACLDAAVHRSIALSKSEDE >gi|312979643|gb|ACRM01000022.1| GENE 100 91584 - 92342 684 252 aa, chain + ## HITS:1 COG:SA1333 KEGG:ns NR:ns ## COG: SA1333 COG0300 # Protein_GI_number: 15927083 # Func_class: R General function prediction only # Function: Short-chain dehydrogenases of various substrate specificities # Organism: Staphylococcus aureus N315 # 4 251 3 250 251 267 53.0 1e-71 MIVGKHFIVTGGTSGLGLEITKKLLKKGAYITLIVRSTEKFENINFNPYKHRVSMIKCNL QDTSQIDTISKSLCYPIDGIIYSAGLGFFKSIQSHSLEETLETYDVNVLGFITLFKTVKP YLTMNASIVAISSQAAFVTQANAAFYGSSKAALNGVLNALRIEEQGFHVMTVNPGPINTP FHKKADPSLKYANKYASLMIDPKILAEDIVKGIIIRKVEINKPLWMNPLLKLYQLAPRKI EKYFTSLFKNKI >gi|312979643|gb|ACRM01000022.1| GENE 101 92434 - 93342 1012 302 aa, chain - ## HITS:1 COG:SA1331 KEGG:ns NR:ns ## COG: SA1331 COG0667 # Protein_GI_number: 15927081 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 301 1 301 302 469 79.0 1e-132 MQKNILKSGIEISELGLGCMSLGTEYHHAEEIIECAIENGITYFDTADIYDRGVNEDIVG KSLKKYQNRDDIVIGTKVGNRPLNDGSTTWDPSKKYIKESVKSSLKRLGLEQLDLYQLHG GTIDDPLDETISAFDELKKEGVIKAYGISSIRPNVIEYYLKHSQIETIMSQFNLIDNRPE RLLNHIHSHGVKVLARGPVFKGLLTSNSVNVLDQKFSDGIFDYNYHELGETIASVKEVES NLSALSFEYLKSHDALGSIIVGASSVSQLKDNITNFNKTVSLDQIKSARHRVKDLEYTQH LE >gi|312979643|gb|ACRM01000022.1| GENE 102 93424 - 93966 564 180 aa, chain + ## HITS:1 COG:SA1330 KEGG:ns NR:ns ## COG: SA1330 COG0494 # Protein_GI_number: 15927080 # Func_class: L Replication, recombination and repair; R General function prediction only # Function: NTP pyrophosphohydrolases including oxidative damage repair enzymes # Organism: Staphylococcus aureus N315 # 1 180 1 180 180 241 70.0 4e-64 MDFNEKTFDRTVIYNGKIIDLELHDVELPDGKTSKREIIKHNGAVAICAITPEKEVLLVK QYRKPIEKPLLEIPAGKLEEDEEREEAAKRELEEETGYKANHLTFITHMYGSPGFSNEKL IIYFTDNLSEGELNLDDDEFVELHKIHLDDIHALLENHEIEDAKTMIALQYVLLNYNHSK >gi|312979643|gb|ACRM01000022.1| GENE 103 94067 - 94513 488 148 aa, chain + ## HITS:1 COG:SA1329 KEGG:ns NR:ns ## COG: SA1329 COG0735 # Protein_GI_number: 15927079 # Func_class: P Inorganic ion transport and metabolism # Function: Fe2+/Zn2+ uptake regulation proteins # Organism: Staphylococcus aureus N315 # 1 148 1 148 149 254 92.0 3e-68 MEERLNRVKQQLQQSSYKLTPQREATVRVLIENEKDHLSAEDVYLKVKDKAPEIGLATVY RTLELLAELKVVDKINFGDGVARFDLRKEGAKHFHHHLVCMECGKVEEIHEDLLPKVEER VESEYQFKILDHRLTFHGICSECQAKGK >gi|312979643|gb|ACRM01000022.1| GENE 104 94681 - 95568 908 295 aa, chain + ## HITS:1 COG:SA1328 KEGG:ns NR:ns ## COG: SA1328 COG4974 # Protein_GI_number: 15927078 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Staphylococcus aureus N315 # 1 295 1 295 295 501 83.0 1e-142 MNTIIEEFLKFIQIEKGLSDNTIGAYRRDLAKYEEYMKEHKIAHIDFIDRQVIQECLGYL IDQGASAKSMARFISTIRNFHQFALREKYAAKDPTVLIETPKYEKKLPDVLEVEEVLQLL ETPDLNKKNGYRDRTILELLYATGMRVSELIQINIEDINLIMGFVRVFGKGNKERIIPLG DTVIEFLDTYLEKVRPQLLKKTITNVLFLNMHGRPLTRQGIWKMIKQYGLKANINKTLTP HTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRQMYNQFHPRA >gi|312979643|gb|ACRM01000022.1| GENE 105 95594 - 96097 336 167 aa, chain - ## HITS:1 COG:SA1327 KEGG:ns NR:ns ## COG: SA1327 COG1547 # Protein_GI_number: 15927077 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 166 1 166 168 157 50.0 7e-39 MNKALSQFYYQFHTHQHYFLCHDILEELWKSNPNFSKKDAIVSLILFSTAMYHYRRCNKL GALKSFKKALYTFKHAKDKDTLGLKVNEFTLLIQNQIEKVKHDQTFQPIQLPITSSIERE LINLYPNYEYKKQINNDDMIVHCHRLRDRSDIIAARKKALKNKRKKS >gi|312979643|gb|ACRM01000022.1| GENE 106 96196 - 96927 862 243 aa, chain + ## HITS:1 COG:SA1326 KEGG:ns NR:ns ## COG: SA1326 COG1354 # Protein_GI_number: 15927076 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 243 9 251 251 347 75.0 9e-96 MYEVKLDAFNGPLDLLLHLIHKYEIDIYDIPMKALTEQYMQYVHAMKEVEINIASEYLVM ASELLMIKSRLLLPQQETENDLEEDPREDLVGRLIEYQNYKEYSLLLTELKKERELYYTK SPADLSHLEKETHWDKNQTIDLTQLIVAYQRVKNRVALNTPKVVEISKDTFTIQQATEVV AKHLEKQTAFNFFSLFNFNEPVSKVVTHFLAILEMAKAGLINIEQSNNFEDINIIRGVNY AIG >gi|312979643|gb|ACRM01000022.1| GENE 107 96914 - 97453 599 179 aa, chain + ## HITS:1 COG:SA1325 KEGG:ns NR:ns ## COG: SA1325 COG1386 # Protein_GI_number: 15927075 # Func_class: K Transcription # Function: Predicted transcriptional regulator containing the HTH domain # Organism: Staphylococcus aureus N315 # 3 177 1 175 180 205 65.0 4e-53 MRLDNLGIIESLLFTVGDEGLEARQLADILKMDLDELDQLISTYHSKGLEIQRYGSIYML TSKKECAPFIEVLVKQKANMKLSQAAMETLSIIAYNQPLTRSDIEITRGINSDGAVRTLI ARGLIEAKDMENSRSHLLMTTDLFLNVFGMKSIEELPSTEEDNEEIETFFSTLTDQKEK >gi|312979643|gb|ACRM01000022.1| GENE 108 97455 - 98192 825 245 aa, chain + ## HITS:1 COG:SA1324 KEGG:ns NR:ns ## COG: SA1324 COG1187 # Protein_GI_number: 15927074 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases # Organism: Staphylococcus aureus N315 # 1 244 1 244 245 379 86.0 1e-105 MNKDLERLQKRIANSGYTSRRKAETLITEGKVKVNGQVVTELGTKVKSSDTVEVEGIKIE QEDKIYILFYKPTQVITSVSDDRGRTVVTDYFKNLEARIYPVGRLDYDTSGLLLLTNDGE FTNLMTHPRYHIQKKYVAKLKGYLMREEVKALEQGIELEDGFTQPAQVKIKNQNKEKNTT LVEITISEGRNRQVRRMFEHFNHTVDKLIRIEFGNLNLKGLNAGEGRVLTPHEVKILRHM AENGN >gi|312979643|gb|ACRM01000022.1| GENE 109 98400 - 99125 926 241 aa, chain + ## HITS:1 COG:SA1323 KEGG:ns NR:ns ## COG: SA1323 COG0745 # Protein_GI_number: 15927073 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 241 1 241 241 410 90.0 1e-115 MTNEILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMD GIEMSSKLREHKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT QTSKPEQSEPHARDVIEFNHLIIDNDAHRVLADQQQVNLTPKEYELLIYLAKTPNKVFDR EQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSEEAAHMIQTVWGVGYKFEVNTNDESS K >gi|312979643|gb|ACRM01000022.1| GENE 110 99106 - 100875 1888 589 aa, chain + ## HITS:1 COG:SA1322 KEGG:ns NR:ns ## COG: SA1322 COG0642 # Protein_GI_number: 15927072 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 584 6 587 588 724 67.0 0 MMNRLNSVVIKLWLTIIFIVTTVLILLSAALITFIQYYYTQQTENAIREDASRISHLVEK ADNKSLAIQHSQELIDGTGGVIIMSNKNMSAEKSYNLIKKRMLKEIQNNDNFNKVFNTGK SATQNVTISEKGTSHSYILLGYPMQSQDRKHAKFSGVFIYQDLKTIEDTNNAITIIILIT AIVFFIVSTIFAFFLSNRITKPLRKLSTQAINVSNGDYSQKTTVNTKDEIGELSYTFNNM SYKIQEHIEALSTQKNIRDRLFNSMIEGVVGLNDKSEIILSNKMADQILPTIDKSIYSEI KNQINATFHSKGTEFNEYAINSKYYVFIMSYIDRIQQDGRSGIVIIIRDMTNEHNLDQMK KDFIANVSHELRTPISLLQGYTESIVDGIVTEPNEIKESLSIVLDETKRLNRLVNELLNV ARMDAEGLTINKEIQPIMPLLRKIQLKYRQQAQDLELNIDLLPNINEDDLWNYDADRIDQ VLTNLIDNATRYTHPGDSITITANKDSQYQILNINDTGSGIAPEHLDHVFDRFYKVEASR TRGKQGTGLGLFISKMIIQEHGGIISVESTVNKGTTFIIKLPKPSIDSK >gi|312979643|gb|ACRM01000022.1| GENE 111 101313 - 101858 579 181 aa, chain + ## HITS:1 COG:SA1316 KEGG:ns NR:ns ## COG: SA1316 COG3601 # Protein_GI_number: 15927066 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 181 1 179 181 213 77.0 2e-55 MQQNKRLITISMLSAIAFILTFLKFPLPFLPPYLTLDFSDVPTLLATFIFGPLSGLLVAL IKNILNFLFNIGDPVGPVANFLAGASFLLTAYFVSHRKQYSSRRSLIIGLVAGTIAMTIV LSILNYFVLLPLYGMIFNLGDVFTNLKVIILSGIIPFNIIKGCVISIIFILLYRRLKKVL K >gi|312979643|gb|ACRM01000022.1| GENE 112 101942 - 102190 460 82 aa, chain - ## HITS:1 COG:SA1315 KEGG:ns NR:ns ## COG: SA1315 COG1141 # Protein_GI_number: 15927065 # Func_class: C Energy production and conversion # Function: Ferredoxin # Organism: Staphylococcus aureus N315 # 1 82 1 82 82 105 93.0 2e-23 MAKYTIVDMDTCIACGACGAAAPDIYDYDDEGIAFVILDDNQGTAEVPEELYEDMEDALE GCPTDSIKIEEEPFDGDALKFE >gi|312979643|gb|ACRM01000022.1| GENE 113 102287 - 103252 888 321 aa, chain + ## HITS:1 COG:SA1314 KEGG:ns NR:ns ## COG: SA1314 COG4955 # Protein_GI_number: 15927064 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 317 1 316 317 291 56.0 9e-79 MQEMISYVKHHSFNYKTNKSIYNILSGKKSHQTFFDASSQQLLSLYHSLPKLKYQTFERL LNKNDIKELNIKVHPRFTYDSLNNTFKCIQLLIQTISQYLHHQLKFVPMNQQVIIQNKVK KIYGTIIKNDLIKDFENEVTDLFQAISLNNNNKCYLHYYLHGYDEPMYTRQQVSLIENIS ISKLYTLELNNLVTLGSEIENKQRYPILSECIILSSLLNKTSITQQYLHQGLSLNEIAIA QNVKLNTIEDHILELFIKGYEKNYENYVEKKDVFQFTQYYTEHKGERLKIYKQEFDHLSY FEIKLMIVGIERGEINVREQS >gi|312979643|gb|ACRM01000022.1| GENE 114 103233 - 104612 1289 459 aa, chain + ## HITS:1 COG:SA1313 KEGG:ns NR:ns ## COG: SA1313 COG0514 # Protein_GI_number: 15927063 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Staphylococcus aureus N315 # 1 457 1 457 459 662 68.0 0 MLENNLKQWFGHESFHPGQKEVIESVLQGNHTLGVLPTGSGKSLCYQFPTYMQQKPTLII SPLISLMDDQVMQLKSQGERKVVCIHSGMDEQEKKENINLLNQSRFIFLSPEFILQSHHF NLIKNIPFGLVVLDEAHCLSEWGYDFRPHYALIGQITHHFKLATILALTATAPPHLTSDL EHILKVKLNTIQTTMNRKNISLSHFNFKDDDEKIEWLLKFIESSGPTIIYVSSKKICLQL AKLIYQHGYLTGIYHGDLTYQERQTVQNQFINNFIPVIVATSAFGMGVNKKDIRTVIHFH LSSSPSNYLQEIGRAGRDGKQSQAISLYQPDDAYILETLLFNDAIVTEDVETFELGAFLP PNKEEILTVLHQNYTFKELKHIFKTSYIRKQAGYQRIIGYTRIDQCRRKFLLEFFGESPN QPNECCDNDSDLSKIECYNRKKVKRQFTFNEKIKNLFRV >gi|312979643|gb|ACRM01000022.1| GENE 115 104759 - 106234 1943 491 aa, chain + ## HITS:1 COG:no KEGG:SH1431 NR:ns ## KEGG: SH1431 # Name: ebpS # Def: cell surface elastin binding protein EbpS # Organism: S.haemolyticus # Pathway: not_defined # 1 491 1 539 539 123 42.0 2e-26 MSRDNFKDDFEKNRQSIDSNDQFDRVNNETNDEIDNFNNETDQQFPPRNAQRRQRRRNQS SSRNKKFNDQVNDYEEGSLDDRYDEETFDKVHNDNNSHHNHENDENNQRSDVDERYDEHN RHSNHRLEDDSYENDDNSDDRMNSDHRRHRDFDQDNDRHEAHHSKIGKDATIAGGAAATG AVGAKASRNKKRKNNRHDDENYRDNENRSVQHNSEDNNELDNKHHRKKGNKGKKAAAVGA GAAGAGAAGAAASKHKQHDEHNNLNHHDADKHREYEDNDGFQAHNGNKKRGLMGILLPLI ALLLILAALAIFIGMYLNNDHKEKNNNTADNKTEQTENKDNAKDKATNEKDQSNEKVATK EDKSSESDNSTKKDSNESNEVATTENSTSNNNNDKNSTESATSENDNNKSNVYNNSSSSD NNSNSQSTQNSTQSSNSAGQQTHVVSGNDNLYRIAIQYYGEGTVENVNKLKRANGLTSNN IVNGQKLVIPQ >gi|312979643|gb|ACRM01000022.1| GENE 116 106385 - 107371 1238 328 aa, chain + ## HITS:1 COG:SA1311 KEGG:ns NR:ns ## COG: SA1311 COG0492 # Protein_GI_number: 15927061 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin reductase # Organism: Staphylococcus aureus N315 # 1 328 1 328 328 556 83.0 1e-158 MQTIESIIIGGGPCGLSAAIEQKKKGIETLVIEKGNIVDAIYHYPTHQTFFSSSDKLSIG DVPFIVEESKPRRNQALVYYREVVRFHQLNVHPFEEVLTVKKIGNKFTITTTKDVYECKF LTVATGYYGQHNTLDVKGADLSKVKHYFKEAHPYFNQDVVVIGGKNSAVDAALELEKAGA NVTVLYRGDRYSAAIKPWILPNFESLVNHEKIDMEFDANVTEITQHSVTYEKNGETVTIP NDFVFAMIGYHPDYKFLQSIGIDIHTNEFGTAPIYNKETYETNVENCYIAGVIAAGNDNN SIFIENGKYHGGIIAQSILRKKQTPLES >gi|312979643|gb|ACRM01000022.1| GENE 117 107434 - 108402 961 322 aa, chain - ## HITS:1 COG:SA1310 KEGG:ns NR:ns ## COG: SA1310 COG0252 # Protein_GI_number: 15927060 # Func_class: E Amino acid transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D # Organism: Staphylococcus aureus N315 # 1 321 1 321 322 465 69.0 1e-131 MKKILVIHTGGTISMSQNQLNQVVTNDINPISLHKNIIDQYANVYEISPFNVPSPHITLS HVIKLKDIIMKEFSKNHYDGCVITHGTDTLEETAYLLDLTIDISQPIVITGAMRSSNEIG SDGLYNFISAIRVATSLEASDKGVMVVFNDEIHTARNVTKTHTSNINTFQSPNQGPLGIL TKDRVQFYNRPYRQKVFPRIDESLNVPLIKAYMGMTKDVLEFYAQQNVQGIIIEALGQGN LPPSCLKGIESCVKKDIPIVLVSRSFNGIVSPVYDYEGGGFRLAEEGLIFSNGLNGPKAR LKLLIGLSNHMNHKELKEYFET >gi|312979643|gb|ACRM01000022.1| GENE 118 108478 - 109134 271 218 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|15639271|ref|NP_218720.1| bifunctional cytidylate kinase/ribosomal protein S1 [Treponema pallidum subsp. pallidum str. Nichols] # 1 213 32 281 863 108 30 2e-22 MNPINIALDGPAAAGKSTIARQVASKLSMIYVDTGAMYRAITYKYLKQDAPEDFQNLINH TSLELTYNPSKGQRIILDNEDVTDYLRENDVTQHVSYVASKEPVRTYAVQKQKELAIKKG IVMDGRDIGTVVLPDAELKVYMIASVDERAERRQKENELRGIPSTLNQLKKEIEERDHYD MNRDISPLRKAEDAITVDTTSKTIEDVTEEILKLVENL >gi|312979643|gb|ACRM01000022.1| GENE 119 109441 - 110622 1968 393 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228476148|ref|ZP_04060856.1| 30S ribosomal protein S1 homolog [Staphylococcus hominis SK119] # 1 393 1 393 393 762 99 0.0 MMTEEFNESMINDIKEGDKVTGKVQQVEDKQVVVHIDGAKYNGIIPISQLSTHHIENPSE IISEGDEIEAYVTKIEIDEENESGAYILSKRQLETEKSYEYLQEKLDNDEVIEAKVTEVV KGGLVVDVGQRGFVPASLISTDFIEDFSVFEGQTIRLKVEELDPENNRVILSRKAVEQAE NDVKKASLLDSLNEGDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVQSPEDVVSV GQEVDVKVKSVEKDTERISLSIKDTLPTPFENIKGKFHENDVIEGKVIRLANFGAFVEIA PGVQGLVHISEIAHKHIGTPSEVLEPGQQVSVKILGIDEDNERISLSIKATLPNEDVIES DEATTQSYLSNETDEDNPTLGDVFGDKFKNLKF >gi|312979643|gb|ACRM01000022.1| GENE 120 110808 - 112118 1492 436 aa, chain + ## HITS:1 COG:SA1307 KEGG:ns NR:ns ## COG: SA1307 COG1160 # Protein_GI_number: 15927056 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 1 436 1 436 436 769 91.0 0 MTKPIVAIVGRPNVGKSTIFNRVVGERVSIVEDTPGVTRDRIYSSGEWLTHEFNIIDTGG IEIGDAPFQTQIRAQAEIAIDEADVIIFMVNVREGLTQSDEMVAQLLYKSKKPVVLAVNK VDNPEMRSDIFDFYSLGFGDPYPISGSHGLGLGDLLDEVVKHFKEEDSDPYDDDIIRLSI IGRPNVGKSSLVNAILGEERVIVSNVAGTTRDAVDTEYSYDGQDYVLIDTAGMRKKGKVY ESTEKYSVLRALKAIERSNVVLLVIDAEEGIIEQDKRVAGYAHEEGKAMVIVVNKWDAVE KDTNTMKKFADDVRNQFQFLDYAPIAFVSAKERLRLKTLFPYIREASENHKKRVQSSTLN EVVTDAISMNPTPTDKGRRLNVFYTTQVAIEPPTFVVFVNDVELMHFSYKRYLENQIRDA FGFEGTPIHIIPRRRN >gi|312979643|gb|ACRM01000022.1| GENE 121 112133 - 113131 1195 332 aa, chain + ## HITS:1 COG:SA1306 KEGG:ns NR:ns ## COG: SA1306 COG0240 # Protein_GI_number: 15927055 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 332 1 332 332 506 78.0 1e-143 MTKITVFGTGSFGTALANVLAENGHSVLMWGKNENTVDEINQSHQNKRYLKDVTLIETIK ATNQLEQAVNFSDIFLIALPTKAIRDVVTEINQHIKTKKTFIHVAKGIENETFKRVSEMI EDSVSKNHKNGVGVLSGPSHAEEVVIKQPTTVAASSKDERISKLIQDLFMNDYLRVYTNN DLIGVELGGALKNIIAVASGIVAGMGYGDNAKAALMTRGLAEISRLGEKLGADPMTFLGL GGIGDLIVTCTSTHSRNYTLGYKLGKGKTTEEALNEMNMVVEGIYTTNSVYHLAKAQNVD MPITNALYKVLFEDKPVKDSVKDLMGRDKKAE >gi|312979643|gb|ACRM01000022.1| GENE 122 113300 - 113572 180 90 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|148826039|ref|YP_001290792.1| 50S ribosomal protein L35 [Haemophilus influenzae PittEE] # 1 90 4 93 96 73 37 6e-12 MNKTDLINAVAEQADLTKKEAGSAVDAVFESIQNSLSKGEKVQLIGFGNFEVRERAARKG RNPQTGKEIEIPASKVPAFKAGKALKDAVK >gi|312979643|gb|ACRM01000022.1| GENE 123 113760 - 114341 570 193 aa, chain + ## HITS:1 COG:no KEGG:SH1442 NR:ns ## KEGG: SH1442 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 192 1 192 195 216 60.0 4e-55 MERTLSKLNRQITQRLKGINEYEAIHINKGLSDVLDHFNIPENAKLACLTIDTSMKHLDD ISKNKLSKKSILIGDLLSAHFYTLISEIGDVSYQKLMSEAIIKSNELKTSLHHHSLERHD IYKAVLDIETLFPFITISHFTDIEISQYEIFEKLFSGVHQYYPSYLSEYDEDEINQFIKH IKQSDKEKSRGNN >gi|312979643|gb|ACRM01000022.1| GENE 124 114341 - 115042 410 233 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163754278|ref|ZP_02161401.1| 30S ribosomal protein S15 [Kordia algicida OT-1] # 14 233 1 221 221 162 41 1e-38 MTENNAKKEQVHTVFQNISKKYDRLNNIISFEQHKIWRKHVMKDMNVLPGSKALDVCCGT ADWTIALSRAVGPNGEVTGLDFSENMLEVGKEKTKSMPNIHLVHGDAMNLPFEDKTFDYV TIGFGLRNVPDYLATLKELNRVLKPGGMIVCLETSQPTLPVFKQVYKLYFKFVMPIFGKL FAKSREEYEWLQQSTFNFPDKTKLKRLFEQAGFSHVKVRSFTGGVAAMHLGYK >gi|312979643|gb|ACRM01000022.1| GENE 125 115072 - 116028 943 318 aa, chain + ## HITS:1 COG:SA1302 KEGG:ns NR:ns ## COG: SA1302 COG0142 # Protein_GI_number: 15927051 # Func_class: H Coenzyme transport and metabolism # Function: Geranylgeranyl pyrophosphate synthase # Organism: Staphylococcus aureus N315 # 1 318 1 319 319 420 71.0 1e-117 MAKLSMNSEIKNVEKRLKNAIKSNDSVLQEAAFHLLSSGGKRVRPAFVLLSSQFGPKKIT EDTYHVAVALELIHMATLVHDDVIDKSDKRRGKLTIEKKWDITTAILTGNFLLALGLKQL SKIEDHRVHTIISNAIVDVCRGELFQFQDQFNSHQNITNYLRRINRKTALLIQLSTEVGA ITSQADNETIRKLKMIGHYIGMSFQIVDDILDFTSTEKKLGKPVGSDLMNGHITLPVLLE MKKDPVFKKQIVELSHLTNKHQFDPLIDQIKNSNSITQSQEVSDHYLNKALDLIDQLEEP NSQNLFRKLIKRMRSRNT >gi|312979643|gb|ACRM01000022.1| GENE 126 116148 - 116600 544 150 aa, chain + ## HITS:1 COG:SA1301 KEGG:ns NR:ns ## COG: SA1301 COG0105 # Protein_GI_number: 15927050 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside diphosphate kinase # Organism: Staphylococcus aureus N315 # 1 149 1 149 149 232 75.0 1e-61 MERTFLMIKPDAVQRNLIGEIISRIERKGLKIVGGKFIIPTKDTVNIHYAEHTEKPFFHK LVSFLTSGPVFAMVVEGEDAVAVSRHIIGKTNPTEAAPGTIRGDYGLTVGRNIIHGSDSV ESAEREINLWFNDDEIYSYEANRENWLYEE >gi|312979643|gb|ACRM01000022.1| GENE 127 116830 - 117996 1568 388 aa, chain + ## HITS:1 COG:SA1299 KEGG:ns NR:ns ## COG: SA1299 COG0082 # Protein_GI_number: 15927047 # Func_class: E Amino acid transport and metabolism # Function: Chorismate synthase # Organism: Staphylococcus aureus N315 # 1 388 1 388 388 660 87.0 0 MRYLTSGESHGPQLTVIIEGVPANLEMRAEEINKEMFKRQGGYGRGRRMQIEKDAVEIVS GVRNGFTLGSPITIVVKNDDFTHWRNIMGIEPISDEARENMKRTITKPRPGHADLIGGMK YNHRDLRNVLERSSARETAARVAVGAVSKILLSQLDIHMYSRVVEIGGIKDVGLYDTETF KQNIDKNDVRVIDESIAQKMRDKIDEAKKEGDSIGGVVQVMVENMPVAVGSYVHYDRKLD GRIAQGVVSINAFKGVSFGEGFKAAEKPGSEIQDEILYHSERGYYRGSNHLGGFEGGMTN GMPIIVNGVMKPIPTLYKPLNSVDINTKEDFKATIERSDSCAVPAASVVCEHVVAFEVAK ALLEEFQSNHIDQLKEQIEERRKLNIEF >gi|312979643|gb|ACRM01000022.1| GENE 128 118032 - 119096 1006 354 aa, chain + ## HITS:1 COG:SA1298 KEGG:ns NR:ns ## COG: SA1298 COG0337 # Protein_GI_number: 15927046 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate synthetase # Organism: Staphylococcus aureus N315 # 1 350 1 350 354 441 63.0 1e-124 MQLQTTYHSDNYPIIVEHHAFKYLSDYIQDYDKVFLIIDEFVDFNFRDKFEILCHNSNIQ KVIVPAGEKMKTFNHYQSIMEQLLGMNLTRNTCLVAIGGGATGDFTGFLASTLLRGVDFI QVPTTILAHDSSVGGKVGINSSHGKNLIGAFYRPKAVIYDLNFLKTLPYHEILSGYAEVY KHALLTGAVATEDIEKHFSDRKTLESLKDMDQFIFKGIKTKLNIIIKDEKESNVRKYLNL GHTFGHAVEYKYKIPHGHAIMIGMIYQFIVANHLLGTQFDIQHYINYMNQLNYPLDLIQQ IDFEEMYQYMLSDKKNNGEGIQMVLLEKLGKPNVYHVEKNILKQSFKQLQLLVE >gi|312979643|gb|ACRM01000022.1| GENE 129 119107 - 120405 1328 432 aa, chain + ## HITS:1 COG:SA1297 KEGG:ns NR:ns ## COG: SA1297 COG0128 # Protein_GI_number: 15927045 # Func_class: E Amino acid transport and metabolism # Function: 5-enolpyruvylshikimate-3-phosphate synthase # Organism: Staphylococcus aureus N315 # 1 432 1 432 432 634 78.0 0 MTTSQTIDIHGPLKGEIEVPGDKSMTHRAIMLSSLAKGKSIIEQPLLGEDCLRTIEIFKL LGVEIEIEEHRLIVNSPGYQHFNIPHQTLYTGNSGTTTRLLAGLLSGLGIECVLSGDTSI GKRPMDRILKPLKLMNANINGIENNYTPLIIKPSAINGINYQMEVASAQVKSAILFASLF SKEASQITELDISRNHTETMFKHYQIPIQVNQKVITTSPYAISNIQPKNFVVPGDISSAA FFIVAALISPGSDITIHNVGINPTRSGIIDIVEQMNGNIELFNVTESSEPTASIRVQYTN NLKPITIEGDLIPKAIDELPIIALLCTQASGTSMIKDAEELKVKETNRIDTTADMLNLLG FKLQATEDGLIIHPSELTRNAIVDSLTDHRIGMMLAVASILSDSPLTIRQFDAVNVSFPG FLPKLKLLENEG >gi|312979643|gb|ACRM01000022.1| GENE 130 120412 - 121656 1652 414 aa, chain + ## HITS:1 COG:SA1296 KEGG:ns NR:ns ## COG: SA1296 COG0457 # Protein_GI_number: 15927044 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Staphylococcus aureus N315 # 1 412 1 412 414 609 82.0 1e-174 MEDIYKLIDDINLQKLDHLDTRVNEALTSNNDDALFILGETLYNFGLTPQGLEVFRTLYH KYPDESELLIYFIEGLMSENQTDEALEYLNQVELSPEKLMLEADLYQQINMTEVAIDKLT EARELEPNDPIIHFALAELLYFDGQYLRATREYEVVLDTGEYEINGINLFSRMADCALQS GNYSDAIQLFDEISEDEMISDDFFKKAIAYEKNDLTQEAIKIMTTLLSKDPDFIQGYFYL QSLYENEKNYPDAIETGKEGLRLNQFYKELMVSTGSLEIEHGDANEGVELLKKALEVDNG YHKPLLILSDLFRQKEDYEAIISLLFYVDEEDLDPVFMWHLAHAYGEEERDTEAQHFYEL AYPTLKSQSLFLSDYYFYLIEIGQKDKAKVLLNELLIIDPTNETWNEELSRLND >gi|312979643|gb|ACRM01000022.1| GENE 131 121671 - 122210 267 179 aa, chain + ## HITS:1 COG:SA1295 KEGG:ns NR:ns ## COG: SA1295 COG5582 # Protein_GI_number: 15927043 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 175 1 175 191 143 49.0 2e-34 MNDTLVKMKQSYIEYALFHYHFKSRISVWLLNYLKASPPKLNCSHFVNKKIKSHITLEIG LKHSNFAAIKLTKDDQTLINTNEIFNYIASKDICIDIFIHFEYNDKQDGRLNELIIQQLI YSDQYLAYLNNIYHLSLDLNKKYSLIEQLEHHIDVSLQMKDQQRFYQLSQILSVLTHHS >gi|312979643|gb|ACRM01000022.1| GENE 132 122236 - 122853 462 205 aa, chain + ## HITS:1 COG:SA1294 KEGG:ns NR:ns ## COG: SA1294 COG4347 # Protein_GI_number: 15927042 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 196 2 195 195 193 56.0 2e-49 MPTLRQLWELSLYQRSILVILLICNVLGTIYGFIWYGDQLLKTQWHYLIFVPDSPIASLL LCISICLIILNKQNSIIEGLAFVTLFKYGLWAVIMNLIMMVNNNDITIMNVLLIISHGIM VLESIYFYPRFKISILSLFISMIWIFNNDYVDYILKKYPYYDFIQQHVHLVAFIALWLSI MSLILYYSFNKLIKVKLFDKKFDSQ >gi|312979643|gb|ACRM01000022.1| GENE 133 122881 - 123579 875 232 aa, chain + ## HITS:1 COG:SA1293 KEGG:ns NR:ns ## COG: SA1293 COG2738 # Protein_GI_number: 15927041 # Func_class: R General function prediction only # Function: Predicted Zn-dependent protease # Organism: Staphylococcus aureus N315 # 2 231 3 232 232 369 88.0 1e-102 MSIVSYIIYIVIIMLIPMWAQHKVKSNYEKYSQVRSTSGKTGREVAEEILHANGIYDVDV VKGEGFLTDHYDPNKKVVCLSPANFDRPSVAGTAIAAHEVGHAIQHQQGYAFLRFRTALV PLANIGSSLSYIIIMAGIFLTALGSAFGSTALWIGAGLMSLAVLFSIVTLPVEFDASSRA MKQITALNIVNEKEYKHARKVLSAAAMTYVAATATAVAELVRIILLARASDN >gi|312979643|gb|ACRM01000022.1| GENE 134 123781 - 124098 432 105 aa, chain + ## HITS:1 COG:SA1292 KEGG:ns NR:ns ## COG: SA1292 COG1694 # Protein_GI_number: 15927040 # Func_class: R General function prediction only # Function: Predicted pyrophosphatase # Organism: Staphylococcus aureus N315 # 1 105 1 105 105 159 82.0 1e-39 MKSLNQMQKEVDDYISQFKAGYFSPLANLARLTEEVGELAREINHYYGEKQKKPTEEENS VKAELGDNLFVLLCIANSLGIDMTESFNDTMDKFNTRDKNRFERK >gi|312979643|gb|ACRM01000022.1| GENE 135 124121 - 125239 1286 372 aa, chain + ## HITS:1 COG:SA1291 KEGG:ns NR:ns ## COG: SA1291 COG0438 # Protein_GI_number: 15927039 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferase # Organism: Staphylococcus aureus N315 # 1 372 1 372 380 612 81.0 1e-175 MKIGITCYPSMGGSGIIATELGIKMAERGHEVHFITSNIPFRIRKPLPNITIHQVEVNQY AVFQYPPYDITLSTKISEVIKEYDLDILHMHYAVPHAVCGILARQMSGKDIKIMTTLHGT DITVLGYDHSLKGAIKFGIEQSDLVTSVSHSLAKQTQSIIETDKEIIPIYNFVREKEFPT QHENQYKELYDIKPEEKVLIHVSNFRKVKRIDTILETFAKVHKHIPSKLILLGDGPELLD MRKIARSLHIEDDVLFLGKQDQVSKFYQMADLVLLLSEKESFGLTLLEAMTTGVVPIGSN AGGIKEVIKHGETGYIVDVGDSEQASHYALKLLTDEQLYQKLQSNMLKDIKQRFSSELIV DQYEYYYKKMLN >gi|312979643|gb|ACRM01000022.1| GENE 136 125254 - 126456 1314 400 aa, chain + ## HITS:1 COG:SA1290 KEGG:ns NR:ns ## COG: SA1290 COG0617 # Protein_GI_number: 15927038 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA nucleotidyltransferase/poly(A) polymerase # Organism: Staphylococcus aureus N315 # 1 400 1 400 400 464 59.0 1e-130 MGNELFETALPILNQIEKHHFEAYFVGGAVRDYIMHRTIHDIDITTSAMPDEIEDIFEHT IPIGKEHGTINVVFNNENYEVTTFRSEGDYLDHRRPSEVNFVRNLYEDVQRRDFTINAIA MDKNYKIFDYFGGQKDIQSKLIRTVGNPSERFKEDALRIIRGLRFQSQLTFDIHTETFEA MQLTCSDVKYLSIERIVVEFKKLILGSNVKQSYHNLLSLKIFNYIPFFNELDMTCVYINE PLEFEQWLAILLIKNNNLPSLKQLKISNKEKSDIHTYIAIIETLPQITTKDALKLFVYDY SDYYILKVLNIYSVLQNNQIPTASELIINSLSIKQVVQHLQLHERKEMDVNGKDLLAHFN KNGGPWLKNVLREIECAIVTDKIKNNKEEILKWVNENVKI >gi|312979643|gb|ACRM01000022.1| GENE 137 126443 - 127414 943 323 aa, chain + ## HITS:1 COG:SA1289_2 KEGG:ns NR:ns ## COG: SA1289_2 COG0340 # Protein_GI_number: 15927037 # Func_class: H Coenzyme transport and metabolism # Function: Biotin-(acetyl-CoA carboxylase) ligase # Organism: Staphylococcus aureus N315 # 78 322 1 245 246 342 68.0 8e-94 MSKYSQDVVKMLYEHQSEYISGQYIANQLNISRAAVKKVIDQLKADGCDIDSINHKGHKL NASPNRWYRGIINKVLESNHLVSKIEVYDSVESTQTIAKQGLVDNQHTMLILSDEQTKGR GRFNRNWSSSKGKGLWMSVVLRPNVSFAMIPKFNLFIALGIRDAIQAFSRDKVEIKWPND IYINDKKVCGFLTEMVANADAVEAIICGIGINLNHQEEDFSDMIRHRATSIRLHHSEEIN RYQFLKRLIEEIEKRYHQFLNSSFETIRDEYIRTSNIWHRKLTFTENGEQFIGEAIDINN DGFLIVKDEDNQTRRLISADIDI >gi|312979643|gb|ACRM01000022.1| GENE 138 127444 - 130161 2399 905 aa, chain + ## HITS:1 COG:SA1288_2 KEGG:ns NR:ns ## COG: SA1288_2 COG1199 # Protein_GI_number: 15927036 # Func_class: K Transcription; L Replication, recombination and repair # Function: Rad3-related DNA helicases # Organism: Staphylococcus aureus N315 # 247 896 6 655 656 987 79.0 0 MAYTSFAVVDLETTGNQLEHDEIIQIGITFVRDNKISGTYHSMIRTDLEIPPFIQALTSI EETMLEQAPYFHEIADDIYEQLKDCIFVAHNVDFDLNFIKKAFEKSNIHFKPKKVLDTLE LFKIAFPTEKSYQLSELANAHNIPLTNAHRADEDATTTAYLMIKAFKKFESLPIDTLKQL YYLSKHLKYDLFNILFEMVRQHHNHDIDYQYAQFEQIIYKKQQDLKVPQIEFKGSLKDLY LEVTTALELTYRPQQLYLSEIILEQLMHNDKALIEAPLGSGKSLAYLLAALMYNIETGRH VMISTNTKLLQHQLLQKDIPSINRALDFKINAALIKSKTDYISLGLISQILKDDTANYEV NILKMQLLIWILETNTGDIQELNLKGGQKMYFDQKLETYVPVRHDIHYYNYIKRNAQNIQ IGITNHAHLIHSDQENSIYQLFDDCIIDEAHRLPDYALNQVTNELNYSDIKYQLGLIGKN ENEKLLKLVDHLEQQRILERLDIPPIDVFGLKSNISDLHELNETLFNHIFDIVQHSDVHD DDVHRYHYVFDFDSTRILKDLHTIVDKINKTLEFFNGINHKTIKSIRKQLLYINDNYRHI EQSLKQNHTAFISIKNLNQKSTIRLIVKDYEVRDILTKQVLEKFKSLTFISGTLTFNHSF EAFKNWFKEDVEFNTYEVQSSLQNHKSTNIYIPSDVVSYDFKNTEDYVASIVDYIQEYVT ITQSKCLVLFTSYRMMHMVQELLNELPIFDDYVILTQQQNQNYKIVQQFNHFDKAILLGT STFFEGFDYQSNGIKCVMIAKLPFMNKYNTKHWLMDSEFESTFKDYVLPDAVTRFRQGLG RLIRNEDDKGLIVSFDDRLTNSNYKHFFEQSLESYSQKKGDIQQFNKLLYRMQASKLKNR KNSLF >gi|312979643|gb|ACRM01000022.1| GENE 139 130258 - 131550 1878 430 aa, chain + ## HITS:1 COG:SA1287 KEGG:ns NR:ns ## COG: SA1287 COG0017 # Protein_GI_number: 15927035 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Aspartyl/asparaginyl-tRNA synthetases # Organism: Staphylococcus aureus N315 # 1 430 1 430 430 810 90.0 0 MKTTIKQAKQYINQEVTIGAWLTNKRSSGKIAFLQLRDGSGFMQGVVVKSEVDEETFKLA KDITQESSLYVIGTITEDNRSDLGYEMQVKSIEVIHEAHDYPITPKNHGTEFLMDHRHLW LRSKKQHAVMKIRNEIIRATYEFFNENGFTKIDPPILTASAPEGTSELFHTKYFDQDAFL SQSGQLYMEAAAMAHGRVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFTNHEESLQVQEQ YVSHIVKSVLEHCKLELKALDRDTSKLEKVSVPFPRISYDDAIKFLKEEGFDDIEWGEDF GAPHETAIANHYDLPVFITNYPTKIKPFYMQPNPDNEDTVLCADLIAPEGYGEIIGGSER INDLELLEQRIDEHQLDTESYNYYLDLRRYGSVPHSGFGLGLERTVAWISGVEHVRETSP FPRLLNRLYP >gi|312979643|gb|ACRM01000022.1| GENE 140 131647 - 132333 752 228 aa, chain + ## HITS:1 COG:SA1286 KEGG:ns NR:ns ## COG: SA1286 COG3935 # Protein_GI_number: 15927034 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 310 71.0 1e-84 MDTHQLKTRPVVVRRELFDHYNELGLNEKDLVILIKLIYAAEVSNKQPSIEFLQKGSNME PREITSIIQNLIQRDLLALHVSKDEEGKFTEYMNLNRFYEKLSDILTQEKNETTHHQTQQ NFKELFQYIEQLFSRPLSPYEIETLNQWIDVDQHDYTLIRAALDEAYSHDKLSFKYVDRI LLNWKKNNVTTLEESNKVREKFNKPKLTHTVKHIPKFDWLNGENLDGK >gi|312979643|gb|ACRM01000022.1| GENE 141 132323 - 132994 186 223 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|229845805|ref|ZP_04465917.1| 50S ribosomal protein L31 [Haemophilus influenzae 7P49H1] # 83 205 87 213 378 76 32 1e-12 MVSKKKALEMIDVIADMFPDAECELKHDNPFELTIAVLLSAQCTDNLVNKVTRSLFKKYK TPEDYLKVDIEELQNDIKSIGLYRNKAKNIKKLCQSLLDQYGGQVPHTHKDLESLAGVGR KTANVVMSVAFDEPSLAVDTHVERVSKRLGINKWKDNVKQVEERLCDIIPKERWSKSHHQ LIFFGRYHCIARKPKCDICPLLEDCREGQKRMKAMKKEVGTND >gi|312979643|gb|ACRM01000022.1| GENE 142 132987 - 133322 351 111 aa, chain + ## HITS:1 COG:no KEGG:SH1461 NR:ns ## KEGG: SH1461 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 109 1 109 109 127 71.0 1e-28 MINKSQFESLENELDVYAKKRQLNSDLAKQYIDDYFELLLLFFKQINEIESIDLNHLDQY PVVPMNFLERYQYMLKRKYHFMGYSQMKTLKNELIKMNASYQIRRKNQNNN >gi|312979643|gb|ACRM01000022.1| GENE 143 133416 - 135809 2395 797 aa, chain - ## HITS:1 COG:SA1283 KEGG:ns NR:ns ## COG: SA1283 COG0744 # Protein_GI_number: 15927031 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Membrane carboxypeptidase (penicillin-binding protein) # Organism: Staphylococcus aureus N315 # 1 718 1 719 727 966 75.0 0 MTENKGSSQPNKGKNGKSKSKKNKNVKRTIIKIIGFLFIAFIVLLLLGILLFAYYAWKAP AFNESKLQDPKPAEIYDKNGDLVKKLDNGARREHVELKDVPKNMKNAVLATEDNRFYEHG ALDYKRLFGAIGKNLTGGFGSQGASTLTQQVVKRSFLSEKKSIGRKAQEAYLSYRLEQEY SKDDIFQMYLNKIYYSDGVYGVRAAAKYYFNKNLNELNLAEEAYLAGLPQVPNLYNIYDN PKEAENRKETVLYLMHYHHRISDKQWKEAKATSLEDNLVKRTTKERQISNDDSNSEYDSY VNFVKAELIGNKHFKNKNYSDLMQSGIKIYTNMDKNVQKTLQDRIDNGDYYKNDDQQVGS TILDSKTGGIVAISGGRNYRDVVDRNAATDTHLTGSSLKPFLSYGPAIENMQWATNHAMQ DESSYSIDGGTFRNYDGQGHGTVSAYDALRQSFNIPALKAWQQVSSNAGKDAPKDFASKV GLDYEIDLGPSEILGGGASEFSPTQLASAFASIANGGTYNNAHSIRKVVTSDDETIEFDH TSHKAMEDYTAYMLAEMLTGTFKPYGSAYGHGVAGVNMGAKTGTSTYGTEVNNQYNLPDN AAKDIWMNGFTPKYTMSIWMGFSQIKPGGEDSFLGHSEQEYAQYLYKDVMSDITSSNDGD FKKPDSVTGSSASTLSVKDHPDNNTTSGSKYDNKSTSSSDSSSSNDSSNSSSTESSSSNS TSTSDNNSNTTSTTNGNTTTNTGNTTDNSANNSTTNNSANNSTTSTQQNNNNDNTNNNSS LSNIFKANTIFNFRKAS >gi|312979643|gb|ACRM01000022.1| GENE 144 135806 - 136435 312 209 aa, chain - ## HITS:1 COG:SA1282 KEGG:ns NR:ns ## COG: SA1282 COG3331 # Protein_GI_number: 15927030 # Func_class: R General function prediction only # Function: Penicillin-binding protein-related factor A, putative recombinase # Organism: Staphylococcus aureus N315 # 2 209 1 208 208 317 79.0 1e-86 MINYPNGKPFKLNPTKVGSNQSEASSNIKYGGRGMTLEKDIEQSNNYYFKHGVAVIHKKP TPIQIVNVHYPKRSKAVINEAYFRTPSTTDYNGVYRGYYIDFEAKETKNKTSFPLNNIHD HQVEHMKSCFLQKGLVFLLIRFKVLDEVYLLPFSKFEPFWERYKKEIKKSITVEEIKKNS YYIPYQYQPRLNYLKAVDKLILDESEDRV >gi|312979643|gb|ACRM01000022.1| GENE 145 136576 - 136689 116 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPPIFLQFITIIIEYCLDINFTLLQIFKHIVFTVKAR >gi|312979643|gb|ACRM01000022.1| GENE 146 136694 - 137047 365 117 aa, chain + ## HITS:1 COG:no KEGG:SLGD_01457 NR:ns ## KEGG: SLGD_01457 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 102 1 102 113 84 47.0 2e-15 MYTLINELLKELQYMASSYNEIKLTQSEKQFHRDVVPYVKKIDDLTEELSHYHDELIQFP YMNKEKLEMLVKHIKELSVECHYNKTSKKLFNEKLKSVNYDLTNLFKYIKDKEESMH >gi|312979643|gb|ACRM01000022.1| GENE 147 137044 - 137607 628 187 aa, chain + ## HITS:1 COG:SA1280 KEGG:ns NR:ns ## COG: SA1280 COG4474 # Protein_GI_number: 15927028 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 186 2 187 187 262 73.0 3e-70 MKTVYVTGYKSFELNIFKDDMKEVDYLKQFIEHKLLQYIDEGLEWVLIQGQIGIELWAAE VVLKLQDTHPELKLGIITPFYGHTSKWNEHNIAKYESIASNAQFLDSVFHSEYQGPFQFK QTDQFILDHTDMTLLIYDDEQEGSPKYFKRMLVDFMEKTTYNCDIVTFDELTDFINDLQW QQDQSFE >gi|312979643|gb|ACRM01000022.1| GENE 148 137619 - 137957 411 112 aa, chain + ## HITS:1 COG:SA1279 KEGG:ns NR:ns ## COG: SA1279 COG3599 # Protein_GI_number: 15927027 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Staphylococcus aureus N315 # 1 112 1 114 114 139 84.0 1e-33 MADVSLKLSAKDIYEKDFEKTMARGYRREEVDAFLDDIITDYQKMADMNNEVVRLSEENN KLKKEVEELRIRVATSRPSDNKSFASSNSKSANNNVDILKRISNLEKAVFGK >gi|312979643|gb|ACRM01000022.1| GENE 149 138133 - 138216 69 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLTQSEMIVVFVLDETISQGINLTAMK >gi|312979643|gb|ACRM01000022.1| GENE 150 138598 - 139734 1613 378 aa, chain + ## HITS:1 COG:SA1277 KEGG:ns NR:ns ## COG: SA1277 COG0116 # Protein_GI_number: 15927025 # Func_class: L Replication, recombination and repair # Function: Predicted N6-adenine-specific DNA methylase # Organism: Staphylococcus aureus N315 # 1 373 1 373 381 709 91.0 0 MYQLLAVCPMGLEAVVAKEIQELGYDTQVENGRIFFEGDANAIVKCNLWLRTADRLKIVV GRFNAKTFDELFEKTKALPWETIIDKEGQFPVQGRSVKSTLHSVPDCQAITKKAIVERLK KAYNEKGWLNESGAKYPVEVAILKDNVLLTIDTSGSGLNRRGYRIAQGEAPIKETLAASL VRLANWKGDTPFIDPFCGSGTIAIEACLIAQNIAPGFNREFVSEEWNIMPPNIYDVMRDE ADQQADYDKDIQVYASDIDPEMVEIAKRNAEEVGLGDIIQFSVKDVNTLTIDQEGPVALV GNPPYGERIGDRDEVEEMYRYVGKLMKQHPYLSTYILTSNKEFEYLVDRKATKRRKLFNG YIECTYYQYWGKKPNIDK >gi|312979643|gb|ACRM01000022.1| GENE 151 139912 - 140550 924 212 aa, chain + ## HITS:1 COG:XF1747 KEGG:ns NR:ns ## COG: XF1747 COG0702 # Protein_GI_number: 15838348 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Xylella fastidiosa 9a5c # 1 211 1 212 213 170 38.0 2e-42 MQTVLIVGANGKVSIEATKIFLENSSFNVDLFLRNAHRIPDYASNRITVFEGDAKNVEDL EKALDQVDIVFASLSGSLDREAQAIIDAMNKKNVKRLIFVAAPGIYDELPDKFNTFNKEQ FGEKLTKYRKAADLIEASDLDYTIIRPAWLTFKNESDYEITQKGDTFKGTEVSRRSVANL AVRIAKQPELYSRQNIGVNKPNTDGDKPAWFN >gi|312979643|gb|ACRM01000022.1| GENE 152 140714 - 144157 3614 1147 aa, chain + ## HITS:1 COG:SA1274 KEGG:ns NR:ns ## COG: SA1274 COG0699 # Protein_GI_number: 15927022 # Func_class: R General function prediction only # Function: Predicted GTPases (dynamin-related) # Organism: Staphylococcus aureus N315 # 1 1146 1 1145 1146 1226 62.0 0 MQNNEQLDVLYKLKKEIEKSNNEALVHTINQVIKKVYLNQYTLSFVGHFSAGKSTLINLL LEQDILPSSPVPTTSNTAIVSVSKEEEIIANLEYQNYVKLKTYEDVKIMNRLNMDVESIE IKFPSNKFNLGFTLQDTPGVDSNVSAHQSTTEQFLYTSNMIVYTVDYNHVQSALNFQFMK RMNQVGIPIIFVINQIDKHNENEISFDTFKQKVEQSIQDWDIKVDQLFYVSKFDHPNNQL HLFSEFLEEKDKLREPIEDFVTRIIEFIHRTQLSYIQEHMQNILDDLNINESEFEESYKQ FQQNQAISEEAQLLNHSSQLLMYLKEKRKNILDNAYIMTHDMREDIRYYLESMALDFKVG GLLNKKKKTEEERAKRLQNVVDRLQEKVNRHIRQPMREDLSFITRFIHHSEVNQRILNQH YQIEPTLISNLYQVQTSINNTYVLTFSDDVVKAIARVVEKQSDSLFKDIIELTEATELSN IDNNDAHLYEQYLEFKNLKQSLTTENYKHYYIHMNDSLDKLIDRTEIHYELNQSTISSTN DLDEDITSTKATRTHHFDIQKALAIIEPVPLFNKTKQDIKETLQRIDNKIVKIGVFGTFS AGKSSLINGLLGDHYLVSSPNPTTAATTEISYGHDSQITLKTNTQLLNELNQLLEYQNVS FNSLEEFMNSNIESLKQQLEKNQLAFITSVEKHFSMYQDMLKEGITHTISQHEIKQWSAE DEYATFVKTVHIHLPLDWLKDKIIVDSLGLHSNNQRHTNETEQILTSSDLILYVSYFNHS FTDNDKAFIEHMKDINQLNEAQTFKMIINAVDLAETNEDLIAVEQYVKDALSQVNLPSEL FGVSSKRALETKDEGILKLKESINHFVETESKTILEKQMVHQIEQMRDNFNQIIYEFKTN QTRMLERQQQLETYKDKTPLTNQMIHTSEQHTKNEVEEQIYHLNKRLQLQLLDEVKKVYN SQMTQNNDFNDEKKHATKMYLDQVHQRLYLEQTLLVERIKTYFTSQLDQQVAPTIQKLNS VHVLIQPHFKITAPFTDDALLRISLEEMLSVLPKQLSKRKILNANAQRELQEMICSNTLE LLQPSLNALKQQLDYYVSNLTHDANIELNQLNNNVLEQINDLLSKRIDDSLIKQLETVNQ QLDPLLN >gi|312979643|gb|ACRM01000022.1| GENE 153 144174 - 145058 851 294 aa, chain + ## HITS:1 COG:SA1273 KEGG:ns NR:ns ## COG: SA1273 COG0258 # Protein_GI_number: 15927021 # Func_class: L Replication, recombination and repair # Function: 5'-3' exonuclease (including N-terminal domain of PolI) # Organism: Staphylococcus aureus N315 # 1 290 1 290 292 464 75.0 1e-131 MTQRVLLVDGMALLFRHFYATSLHKQFMYNSKGIPTNGIQGFVRHIFTAIKDIKPSHVAI CWDMGQATFRNDMYTSYKQNRPAPPDELIPQFDYVKDISEQFGFVNIGVANYEADDVIGT LAKIYSKDNEVHIVTGDRDILQCINEQVEVWLIRKGFNIYHHYTLNRFNEEYALHPLQLI DIKAFMGDSADGYPGVKGIGEKTAIKLIQSYGSVENVLDNIESLTPNQQKKIAIDKENLI LSKQLAKIYTDVPIDTTALYEEMKYTHSLNHILSICNEHELYVSGKYLASKILM >gi|312979643|gb|ACRM01000022.1| GENE 154 145122 - 145523 455 133 aa, chain - ## HITS:1 COG:SA1266 KEGG:ns NR:ns ## COG: SA1266 COG0328 # Protein_GI_number: 15927014 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HI # Organism: Staphylococcus aureus N315 # 1 133 1 133 133 195 73.0 2e-50 MAKIFFDAATSGNPGRSTCGIVIKENDIKYTYTHDLGELDNHSAEWSAFIHALEHARELN VSNALLHTDSKLIEDSVNQGYVKNARFKPFFENMEILEASFDLLFVKWVPRDKNKEANQL AQQALYKLIKNKQ >gi|312979643|gb|ACRM01000022.1| GENE 155 145623 - 146327 916 234 aa, chain - ## HITS:1 COG:SA1265 KEGG:ns NR:ns ## COG: SA1265 COG1738 # Protein_GI_number: 15927013 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 338 85.0 5e-93 MYNEFFGIATFFVTFIVMVLMYRCFGKQGLIAWVAIGTIIANIQVIKTVDIFGISATLGN VMFASIYLATDILNDIYGRKVAKRAVWLGFSSTLVMIIVMQMSLHFIPAPEDISQKALST IFDLVPRIALGSIIAYIIGQHVDVFIFSMIKKVFQSDKTFIIRAYGSTVLSSIIDTALFV TIAFIGTLPASVVFEIFITTYVLKLVSTIFNVPFGYIAKSFYRNGKIQKLDEGY >gi|312979643|gb|ACRM01000022.1| GENE 156 146526 - 146720 112 64 aa, chain + ## HITS:1 COG:no KEGG:SH1475 NR:ns ## KEGG: SH1475 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 64 1 64 64 101 95.0 7e-21 MKVILTHSEQNAIEKIDELMNTYCDKCLLKTHIRKTEGKTQAHHFCISECSIGKQIKQLG NELQ >gi|312979643|gb|ACRM01000022.1| GENE 157 146732 - 146980 339 82 aa, chain + ## HITS:1 COG:no KEGG:SERP1007 NR:ns ## KEGG: SERP1007 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 82 1 82 86 112 67.0 4e-24 MHIKSIEDTPNYNTIKINLSEKRKDNQSNTYTSAQDGQPDFINRLFDIEGVKSVFYVMDF ISVDKEEYANWDDLVPKIEDTF >gi|312979643|gb|ACRM01000022.1| GENE 158 146998 - 148113 1332 371 aa, chain + ## HITS:1 COG:SA1262_2 KEGG:ns NR:ns ## COG: SA1262_2 COG1413 # Protein_GI_number: 15927010 # Func_class: C Energy production and conversion # Function: FOG: HEAT repeat # Organism: Staphylococcus aureus N315 # 220 368 1 149 151 243 79.0 6e-64 MEILKIEPTPSPNTMKIVLSEKRADNQSNTYTEVKTSQPDFINDLLQIKDVKSIFHVIDF LAIDKYPKANWEEVLPQITASLQKEETISQSSQFDEHYGEVKAEILTFKNIPYQIKLTNA HEEIRKQLPDIFINSMLKAQEDDDNVIFLRKWKEVGLRYGELSLVMEEVYEEIIALYPKS RLEQLVVQALSKQTKSTSHFYQHVSYEEYLNESDWKVRLRMLTEFPTPTLEDIPLLEQAL NENKLPLRRQAIVLFGMIESKEILPYLYKGLNDKHPAIRRTAGDCISDLGYKEALPEMEK ALDDPQKIVRWRAAMFLFEEGGKAQLASLRAHANDNAYEVKLQVEMAISRIENGDEALGS VWKQIANRNKH >gi|312979643|gb|ACRM01000022.1| GENE 159 148127 - 148561 652 144 aa, chain + ## HITS:1 COG:no KEGG:SH1478 NR:ns ## KEGG: SH1478 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 144 1 144 144 254 89.0 9e-67 MNPYEQYMHELAQQMRSELTDNGFTSLESSEDVSNYMNNVKDDETTFVVINSTCGCAAGL ARPAAVAVADQNDKKPTHKVTVFAGQDKEATQTMRDYIQQVPSSPSYALFKGTELKYFIP REHIEGRDIQDICMDIKDAFDENC >gi|312979643|gb|ACRM01000022.1| GENE 160 148679 - 149635 984 318 aa, chain + ## HITS:1 COG:SA1260 KEGG:ns NR:ns ## COG: SA1260 COG0207 # Protein_GI_number: 15927008 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate synthase # Organism: Staphylococcus aureus N315 # 1 318 1 318 318 569 83.0 1e-162 MLNPFDSAYHDLCNDILEIGNQRDDRTHTGTISKFGHQIRFDLTKGFPLLTTKKVSFKLI ATELLWFIKGDTNIKYLLKYNNNIWNEWAFEKYIQSEDYHGPDMTNFGHRSQKDENFNKM YQQEMKKFKEKVLNDDTFAKKYGDLGHVYGKQWRDWVDQYGNHFDQLKTVIQQIKTNPNS RRHIVSAWNPTEIDSMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLT HLIAKECNLEVGEFIHTFGDAHIYSNHIEAIKTQLSRESFAPPTLKINSEQSIFDINYED LELVDYQSHPAIKAPIAV >gi|312979643|gb|ACRM01000022.1| GENE 161 149677 - 150153 696 158 aa, chain + ## HITS:1 COG:SA1259 KEGG:ns NR:ns ## COG: SA1259 COG0262 # Protein_GI_number: 15927007 # Func_class: H Coenzyme transport and metabolism # Function: Dihydrofolate reductase # Organism: Staphylococcus aureus N315 # 1 158 1 158 159 268 82.0 2e-72 MTLSILVAHDQQRVIGYKNALPWNIPNDLKHVKQLSTGHTLVMGRKTFESIGKPLPNRKN VVLTRDNNFKPDGVEVIHTIDDIYNLEGHVFIFGGQTLFEVMIDKVDDMYITVVDGKHQG DTFFPPYTFEDWTVASSEEGQLDEKNTIPHTFLHLVRK >gi|312979643|gb|ACRM01000022.1| GENE 162 150175 - 151020 1126 281 aa, chain + ## HITS:1 COG:SA1258 KEGG:ns NR:ns ## COG: SA1258 COG1307 # Protein_GI_number: 15927006 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 280 1 278 279 353 71.0 3e-97 MTKQVIVTDSTSDLSAEYLNQHNIHVVPLNLTIDKESFVDQVDISSEEYIKRIEENADVK TSQPSIGKFIELYEQLDNDNDDVEIFSIHMSSGLSGTYQTALQASNMVEAKVNVIDSKSI SFGLAYQIQRLVELVNTNLSSIEIIKHISDLQKNIKLFVVIGQLNQLIKGGRISKTKGLI GNIMKIKPIGTLREGYLEIVHNSRTQNSSIQYLKKEIAKFIENHTIQSIGIAHANTIEFV EKVKNQFNEAFGQQSYDVNVTTPVISTHTGQGAIGLVIVRG >gi|312979643|gb|ACRM01000022.1| GENE 163 151123 - 151650 641 175 aa, chain + ## HITS:1 COG:SA1257 KEGG:ns NR:ns ## COG: SA1257 COG0225 # Protein_GI_number: 15927005 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 3 174 5 176 177 293 83.0 1e-79 MAYATLAGGCFWCMVKPFISYPGIEDVVSGYSGGDIENPTYEQVCSNQTGHREAVQITYN PDITSFENILDVYFKIFDPTDNKGQFFDRGESYEPAIFYHDEQQKKAAELKIQQLNEEGI FKKPIITPVLPYKNFYPAEDYHQDYYKKNPMHYEQYQRGSGRKAFIESHWGSQND >gi|312979643|gb|ACRM01000022.1| GENE 164 151643 - 152071 451 142 aa, chain + ## HITS:1 COG:SA1256 KEGG:ns NR:ns ## COG: SA1256 COG0229 # Protein_GI_number: 15927004 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Conserved domain frequently associated with peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 1 142 1 142 142 261 90.0 3e-70 MIKKDKSELNDMEYLVTQENGTEPPFQNEYWNHFDKGIYVDKISGKPLFTSEEKFESDCG WPSFSKALDDDEIVELVDKSFGMIRTEVRSEDANSHLGHVFNDGPKESGGLRYCINSAAI QFIPYEKLEELGYGDLIQHFNK >gi|312979643|gb|ACRM01000022.1| GENE 165 152084 - 152584 711 166 aa, chain + ## HITS:1 COG:SA1255 KEGG:ns NR:ns ## COG: SA1255 COG2190 # Protein_GI_number: 15927003 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system IIA components # Organism: Staphylococcus aureus N315 # 1 166 1 166 166 259 83.0 1e-69 MFKKLFGKDKEVNKETQLYAPLTGEYVKIEDIPDPVFAQKMMGEGFGINPTEGEVVSPVA GKVDNVFPTKHAIGLKTKNGLEILVHIGLDTVQLDGEGFNVLVSSGDTVQVGDPLLKFDL EFIRNNAKSVISPIIITNSDQTESISLDDVKAVIKGETKVVDVTMS >gi|312979643|gb|ACRM01000022.1| GENE 166 152584 - 152805 249 73 aa, chain + ## HITS:1 COG:SA1254 KEGG:ns NR:ns ## COG: SA1254 COG4479 # Protein_GI_number: 15927002 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 73 1 73 73 104 79.0 5e-23 MKDHSFYQFALTVRGRKDDKGELAEDIFNDLSFPKHESDFNILSDYIEMQSDITLPMSVF DDLYEEYTEWLKF >gi|312979643|gb|ACRM01000022.1| GENE 167 153006 - 154475 1674 489 aa, chain + ## HITS:1 COG:SA1253 KEGG:ns NR:ns ## COG: SA1253 COG0793 # Protein_GI_number: 15927001 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic protease # Organism: Staphylococcus aureus N315 # 13 489 20 496 496 589 69.0 1e-168 MNNHSEEHHDGQSDEKRYASTKKKMHLTIWQFILILLSVIIITTIIAVFATIGINHKLSG LTKEERQEMKKIEFAYKTLDTDYYKKQNSSKLSEAAINGMVKELKDPYSEYMTKSETKSF NEDVSGDFVGIGAEMQKKNKDIMITSPMKDSPAEKAGLQPKDIVTKVNGKSVVGKPLDQV VKVVRGKEGSNVKLTIKRGSEEKDINIKRGKIHVKSVEYKKKGNIGVFTITKFQQNTAGE LKSAIIKAHNAGVRNIILDLRNNPGGLLDEAVKMANIFIDKGQTVVQLEKGNDKEAIKTS NDALKGVKDMKVSILVNEGSASASEVFTGAMKDHHKAKVYGSKTFGKGIVQTTRELKDGS LLKYTQMKWLTPDDHYIHGKGIRPDVTIDSPKYQSLSVIPSDKTYSVGDNNKNVKSIKIG LDALGYYNGDESNQFDNQLANTIKLFQSNNQLSETGKFDTKTNEKFTQLLVEKSNNEDTV LDKLLKLIK >gi|312979643|gb|ACRM01000022.1| GENE 168 154493 - 154996 650 167 aa, chain + ## HITS:1 COG:SA1252 KEGG:ns NR:ns ## COG: SA1252 COG0454 # Protein_GI_number: 15927000 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 167 1 167 169 216 63.0 2e-56 MIRLGKHEDINQIEILVSEAKDLMKSFGNNQWDDKYPTPEHFKADIDTKTLYVLEENNTI YGFIVVDQQQSEWYDNLEWPIDRNNAYVIHRLVGSKDYKGAATQLFDFAVKLAEEHHIHV ILTDTFALNKPAQGLFEKFGFQKVGETEIDYHPFNRGAPFYAYYKNI >gi|312979643|gb|ACRM01000022.1| GENE 169 155015 - 156082 1321 355 aa, chain + ## HITS:1 COG:SA1251 KEGG:ns NR:ns ## COG: SA1251 COG0707 # Protein_GI_number: 15926999 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Staphylococcus aureus N315 # 1 355 1 355 356 540 78.0 1e-153 MSKIAFTGGGTVGHVSVNLSLIPTALEKGHQVFYIGSKNGIEREMIESQISNIKYYPISS GKLRRYLSFENAKDVFKVLKGILDARRVLKKEKPDLLFSKGGFVSVPVVIAARSLNIPTI IHESDLTPGLANKISLKFSKKIYTTFEDTLKYLPKDKADFVGATIREDLKEGNQQKGYEI TGFDSDKKVLLVMGGSLGSKKLNDIIRENLEALLHDYQIIHLTGHGLVDESYKQKGYIQY EFVKEELTHLLSITDTVVSRAGSNAIYEFLTLRIPMLLIPLGLDQSRGDQIDNAKYFESK RYGKMIPEDQLTQFKLLEQLKQIESHRNDIIHQMESYKESYTKEDLFNKILNDAL >gi|312979643|gb|ACRM01000022.1| GENE 170 156100 - 156723 824 207 aa, chain + ## HITS:1 COG:SA1250 KEGG:ns NR:ns ## COG: SA1250 COG0671 # Protein_GI_number: 15926998 # Func_class: I Lipid transport and metabolism # Function: Membrane-associated phospholipid phosphatase # Organism: Staphylococcus aureus N315 # 1 199 1 199 204 305 81.0 3e-83 MNRTKRITLLIVFTLIFGIIAFFHESRLGKWIDNEVYEFIYASESFITTSILLGATKIGE VWAMVCLSLMLVAYLMLKRYKIEALFFVITMSLSGILNPLLKNIFDRERPTLLRLIDISG FSFPSGHAMGSTSFFGSAMYIAQRRASGSTKGVIIGLCAALILLISISRVYLGVHYPTDI IAGIIGGAFCIVLSTLVLKGLHEPTIL >gi|312979643|gb|ACRM01000022.1| GENE 171 157049 - 157708 888 219 aa, chain + ## HITS:1 COG:L0131 KEGG:ns NR:ns ## COG: L0131 COG0745 # Protein_GI_number: 15673576 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Lactococcus lactis # 4 219 6 227 230 213 51.0 3e-55 MTNILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNING LEICRRVRQVQSTPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQP HKDIIDINGIRIDIDAFKVTVDGKQLDFTKTEYDLLYLLATNRNHVLQREQILNHVWGYN SEVETNVVDVYIRYLRNKLKPFNKEKVIETVRGVGYVIR >gi|312979643|gb|ACRM01000022.1| GENE 172 157708 - 159066 1371 452 aa, chain + ## HITS:1 COG:SA1246 KEGG:ns NR:ns ## COG: SA1246 COG0642 # Protein_GI_number: 15926994 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 451 1 451 451 530 63.0 1e-150 MKNHTLQYKWMTITTLIMFTTIILFCLIIIFFLKDTLREGEVEEAEHSLSDIVNLIQTRP INNISILDLSASLENYEEVIIYNHIGQRIMKSSNESTIQFIPNNNLQKTDRIQVMRNNGK EYLVITEPLHSPNFKGYSVLIHSLEHYNNLVKSLYIIAVVFGLLATVITACISYFISKNI TKPLVTMSNKMNQIRRDGFQNKLELDTSYKETNNLIETFNEMMYQIEASFNQQRQFVEDA SHELRTPLQIIQGHLNLIKRWGKKDPDILEESLNISLEEMNRITKLVEELLLLTKDKVNM QSLEKEDVDINEEIQSRIKALQQLHPDYLFEIELEQKPLVLQINRHQFEQLILIFIDNAM KYDKERKHICIKTQLRNKQISIEITDHGLGIPKEDQEFIFDRFYRVDKSRARSQGGNGLG LSIAEKIVSQYGGYISVDSELNQFTTFKINFK >gi|312979643|gb|ACRM01000022.1| GENE 173 159236 - 162043 2985 935 aa, chain + ## HITS:1 COG:SA1245 KEGG:ns NR:ns ## COG: SA1245 COG0567 # Protein_GI_number: 15926993 # Func_class: C Energy production and conversion # Function: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 935 1 910 910 1506 78.0 0 MAKDKRDVTEAPVNFGANLGLMLDLYDDYLQDPTSVSDDLQVLFSTIKNGEAQIKAKSTT DGSGTSADDSTIKRVMRLIDNIRQYGHLKADIYPVNAPKRTHVPKLEIEDFNLDKETLEN ISSGIVSDHFSDIYDNAYEALKRMEKRYKGSIAFEYNHINNNKERTWLKRRIETPYKATI NSDEKINLFKTLAHVEGFEKYLHKNFVGAKRFSIEGVDTLVPMLQHTLKRAAQEDIQNIQ IGMAHRGRLNVLTHVLEKPYEMMISEFMHTDPMKFLPEDGSLKLTAGWTGDVKYHLGGVK TTSSYGIEQRISLANNPSHLEIVAPVVIGKTRAAQDDTHHAGGPTTDFHHGMPIIIHGDA AYPGQGINFETMNLSNLDGYSTGGALHIITNNRIGFTTEPIDGRSTTYSSDIAKGYDVPI LHVNADDVEATIEAIDIAMEFRKEFHKDFVIDLVGYRRYGHNEMDEPSITNPTLYHNIRK HDSVEVIYGNKLVDEGILTKEQMSEMIDSVQKEMRTAQDKIDKSDKMNSTAMNKPESLQL PLQSDEKEFSFEHLKEINDAMLNYPEDFHVFRKLNKVLEKRREPFENENGLVDWAQAEQL AFATIVQDGISIRLTGQDSERGTFSHRHAVLHDEDNGNTYTPLHHVPSQKATFEVHNSPL SEAAVVGFEYGYNVENKNSMNIWEAQYGDFSNMAQMMFDNFMSSARAKWGERSGLTLFLP HAFEGQGPEHSSARLERFLQLAAENNSTVVNLSSSSNYFHLLRAQAKSLNTEAMRPLIVM SPKSLLRNKTVAKPISEFTTGGFKPIIVEDAQKAKVTKVILASGKMFIDLKETLAKEPNE NIQLIAVERLYPFPEEDIKKALEELPNLESVAWVQEEPKNQGAWLFVYPYLKSIVGHQYN LSYQGRIQRAAPAEGDGEIHKLVQHKIIENSVKNN >gi|312979643|gb|ACRM01000022.1| GENE 174 162055 - 163362 1876 435 aa, chain + ## HITS:1 COG:SA1244 KEGG:ns NR:ns ## COG: SA1244 COG0508 # Protein_GI_number: 15926992 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 435 1 422 422 570 77.0 1e-162 MAEVKVPELAESITEGTVAEWLKNIGDNVEKGEAILELETDKVNVEVVSEEDGILQEQLA SEGDTVEVGQAIAIVGEGKGSTSSSSESQNNDSNSENENTKTDSAETNYSTPRTSTEAQG SDTSSNDDSESINNKRVNATPSARRHARKNGIDLNEVAGKGSDVIRKEDVDNSQKSSQSN QNSQPNSQQETSKKSTANTPNKPVIREKMSRRKKTAAKKLLEVSNNTAMLTTFNEVDMTN VMELRKRKKEQFIKDHDGTKLGFMSFFTKAAVAALKKYPEVNAEIDGDDMITKQYYDIGI AVSTDDGLLVPFVRDCDKKNFAELEKSIADLAVKARDKKLGLDDMVNGSFTITNGGVFGS MMSTPIINGNQAAILGMHSIITRPIAIDKDTIENRPMMYIALSYDHRIIDGKEAVGFLKT IKELIESPEDLLLES >gi|312979643|gb|ACRM01000022.1| GENE 175 163956 - 164765 892 269 aa, chain + ## HITS:1 COG:SA1243 KEGG:ns NR:ns ## COG: SA1243 COG0346 # Protein_GI_number: 15926991 # Func_class: E Amino acid transport and metabolism # Function: Lactoylglutathione lyase and related lyases # Organism: Staphylococcus aureus N315 # 1 268 1 269 269 276 52.0 4e-74 MSGLRSVTIGTSDLSKTQNLFHNILGLNVATKRQALRFGDAELNPGTRLHFVEVPNPNYR NVHISSVGLRTPSNAGLEEYQQILEKNNIQFSSITELNGNQHFNFKDDNHQIFDIYSNEL NVGVGLGTPTFESAVNPLHQIQGLGPVIIKVNELLVTTSIFKNVFNLTHYAEYESTEFPD QTVQVFKIGDGGLGGEIHLYQSNDQVELKEEGIVEQIEFSTNSTEDFEHAQKELDEIGIP YQILNQGDAQSLRITEGSGISFIYTLEKN >gi|312979643|gb|ACRM01000022.1| GENE 176 164794 - 165003 312 69 aa, chain + ## HITS:1 COG:no KEGG:SH1499 NR:ns ## KEGG: SH1499 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 69 1 69 69 110 86.0 2e-23 MGMLHEDWKSRTPIKQVMVVNTDAKKFTVSDMLTIGKQYDVINETEEYYQIIDNSDLVGG YYKDYFKEV >gi|312979643|gb|ACRM01000022.1| GENE 177 165122 - 165913 1194 263 aa, chain + ## HITS:1 COG:SA1241 KEGG:ns NR:ns ## COG: SA1241 COG0714 # Protein_GI_number: 15926989 # Func_class: R General function prediction only # Function: MoxR-like ATPases # Organism: Staphylococcus aureus N315 # 1 263 1 263 263 438 86.0 1e-123 MPNNHYINSDQSVFNDAKALFNLNKNILLKGPTGSGKTRLAETLSEVVQTPMHQVNCSVD LDAESLLGFKTIKTNEQGQQEIIFIDGPVIKAMREGHILYIDEINMAKPETLPILNGVLD YRRQLTNPFTGEVIKAAPGFNVIAAINEGYVGTLPMNEALKNRFIVIQVDYIGGDILKDV IKQQSQLQDDDIIKKIIKFNEDLRTMSKQGQISEEAASIRVLIDLSDLITVMPIERAIKR TIIDKLEDEREQQAIRNAIELNF >gi|312979643|gb|ACRM01000022.1| GENE 178 165926 - 167815 1882 629 aa, chain + ## HITS:1 COG:SA1240 KEGG:ns NR:ns ## COG: SA1240 COG4548 # Protein_GI_number: 15926988 # Func_class: P Inorganic ion transport and metabolism # Function: Nitric oxide reductase activation protein # Organism: Staphylococcus aureus N315 # 1 616 1 615 628 887 74.0 0 MSDRFIKFNDEQLDAKQVMMLQDLARLLLKNEQTKVKIQKFPYYDPINNTLITSWFWSHR PKDIESAGLKTDVMLAAYGYKMMDEAIVNEVLHDNEFSHPKFYHQLFRLLEDMRVFNFIK VDRPSTAKQIDLRVKTRLSYTESQIKFYKTKTVYTDLLFLYLERAFLSQNFFDIPTIHPQ LDDILNHMFQYLPDFFQNESSEDNMYLAQRIMFQIDEMLSHDMLNEYYHLPRKVYEAIHE MSYEDIKRMDASNVDGQDNTNQETDTTSAEAETNAQDSKSEGGAYLEMELHEGENSDVMS DNDTAREGDSTDDMTDMMTKKGRGSNHSLDRDEGGSIGSNPSFALRGINENVEIEWKVPD IEPEYISSYQQVKNEVQFETKDLIQIIKKTIDREHVDERHNLTKGRLQRDLTNWFIDDQY KLFYKKQDLSKTFDATFTLLIDVSASMFDKMEETIKGVVLFHETLKALNVKHEILAFNED AFDSDDRKQPNIIDEIVHYDRSIIEKSGPRIMSLHPQDDNRDGVAIRIASERLLRRSHQQ RFLIIFSDGEPSAYNYAQDGILDTYEAVEMARKFGIEVFNVFLSQDPITEDIEETIHNIY GQFALFVEGVENLPSHLSPLLKKLLLKSF >gi|312979643|gb|ACRM01000022.1| GENE 179 167812 - 167928 79 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MYMFAIFNILAQKEFTSLCMSQKFEYYKSIYSLIIDYD >gi|312979643|gb|ACRM01000022.1| GENE 180 167945 - 169288 1424 447 aa, chain + ## HITS:1 COG:SA1239 KEGG:ns NR:ns ## COG: SA1239 COG1114 # Protein_GI_number: 15926987 # Func_class: E Amino acid transport and metabolism # Function: Branched-chain amino acid permeases # Organism: Staphylococcus aureus N315 # 1 447 1 447 447 548 72.0 1e-156 MNKHTWIIGFTLFAMFFGAGNLIFPPNLGQESGAYFWPAILAFCLTGIGLPLLGVVVGAL DKQGYIGAFNKLSPRFSVVFLIIIYLTIGPLFAIPRTASTSFEMTITPITHSNSNMSLFI FTLIYFIIVLYLCINPGKIVDRIGSLLTPLLLITILAMIIKGFVDYKGHGSSHGNPETYS SNIESFSHGFIEGYLTMDAIAAIAFSMIVVNAIKATGVKHTNQIFKQTVIAGFIAALALI FIYVSLGYIGNHMGISQNTITTLMAKNQNIGTYLLTTMATNGFGVLGKYLLGIIVALACL TTACGLIVSVSQYFNSIFPKISYKVYVIGFTIISFILANLGLNSVINMSVPVLSIIYPVA ITMIILILLARFIPTKPIAQQIPIIIVSLVSIVSTINTLGLIKLNVINHLPLKQYSLEWL PIAIISIIIGYIVSKFINQSYIVYQKE >gi|312979643|gb|ACRM01000022.1| GENE 181 169345 - 170484 1436 379 aa, chain - ## HITS:1 COG:SA1238 KEGG:ns NR:ns ## COG: SA1238 COG3853 # Protein_GI_number: 15926986 # Func_class: P Inorganic ion transport and metabolism # Function: Uncharacterized protein involved in tellurite resistance # Organism: Staphylococcus aureus N315 # 1 377 1 372 378 389 70.0 1e-108 MNQKDQFINSHPLDDYIEHQPHDVSTQNVKQDFEQQFNEQDFKKIDSISQQIKPLDSEGL LSFGTHLQQNMSQFSHQMLDEVQSKDVGPIGDTLNQLMSKLREVNPDDLNQDNQSKLKRL FRRTKASINEVFSRMQSVSSQVDRITIQLDKHKGNLTKDIQLLDHLYEQNKVYFDDVSLY IAAAQRKKQDINANELPKLRQHAEQSGNQMDIQSVADMEQFVDRLDKKIYDLQLSRQIAI QTAPQIRMIQNVNQALAEKIQSSILTSIPLWKNQMAIALTLMRQKNAVTAQRAVTDTTND LLTRNAAMLKQNAIETATENERGIVDIETLKATQNDIIETIEQTLQIQYNGRQKRQQAER ELSQLENELKEHLLTMKKE >gi|312979643|gb|ACRM01000022.1| GENE 182 170523 - 171146 645 207 aa, chain - ## HITS:1 COG:SA1237 KEGG:ns NR:ns ## COG: SA1237 COG4915 # Protein_GI_number: 15926985 # Func_class: R General function prediction only # Function: 5-bromo-4-chloroindolyl phosphate hydrolysis protein # Organism: Staphylococcus aureus N315 # 1 206 1 206 207 280 69.0 2e-75 MRYNLSRLLGVLVGIPIAIISWVTSVFGFDLSFILDALIGIGMFFVSYFPTQRLTSKKYL NEIGLSRRDYRFVNQQLNQSHNKIRNILKSYINIRTIKDFRQINDIYKISKSIHYAVKQR PSSFFKVESFFYSHIDNALNLIDAYTRLSKMPKKSDKEKQKLEQTRITLDEVKRTLIADL KRLNEDDYERLDIEMELNRLQQKRYKK >gi|312979643|gb|ACRM01000022.1| GENE 183 171164 - 171367 189 67 aa, chain - ## HITS:1 COG:SA1236 KEGG:ns NR:ns ## COG: SA1236 COG1254 # Protein_GI_number: 15926984 # Func_class: C Energy production and conversion # Function: Acylphosphatases # Organism: Staphylococcus aureus N315 # 7 66 30 89 89 68 55.0 2e-12 MQKKLGIFGTVQNVEDYVDIYAQGDEEQIKSFIDKVIAGASPASSVSDYSIEDLDVTNRY SEFKTIY >gi|312979643|gb|ACRM01000022.1| GENE 184 171324 - 171437 239 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MQRKHIQVFGTVQGVGFRHHTELIAKKTWYIWDCSKC >gi|312979643|gb|ACRM01000022.1| GENE 185 171605 - 171913 407 102 aa, chain + ## HITS:1 COG:SA1235 KEGG:ns NR:ns ## COG: SA1235 COG4699 # Protein_GI_number: 15926983 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 102 1 102 102 129 69.0 1e-30 MWTVAKIRADYEGWWLFSDWTEKIVEQHHYSNYEEMLKDYQSIIKKSKKYYNNYVIGKYN IYAFYNNCDLNFCEDCDEDLQIFYSFIVLNNKEVYYNLPKIN >gi|312979643|gb|ACRM01000022.1| GENE 186 172119 - 172319 329 66 aa, chain + ## HITS:1 COG:SA1234 KEGG:ns NR:ns ## COG: SA1234 COG1278 # Protein_GI_number: 15926982 # Func_class: K Transcription # Function: Cold shock proteins # Organism: Staphylococcus aureus N315 # 1 66 1 66 66 109 96.0 1e-24 MKQGTVKWFNAEKGFGFIEVEGENDVFVHFSAINQEGYKSLEEGQSVEFEVVEGDRGPQA ANVVKL >gi|312979643|gb|ACRM01000022.1| GENE 187 172637 - 173902 1756 421 aa, chain - ## HITS:1 COG:SA1232 KEGG:ns NR:ns ## COG: SA1232 COG0019 # Protein_GI_number: 15926980 # Func_class: E Amino acid transport and metabolism # Function: Diaminopimelate decarboxylase # Organism: Staphylococcus aureus N315 # 1 421 1 421 421 702 85.0 0 MSVKYNDYGELTMAGTSLKTLAQSFGTPTIVYNEDEIRNQMRRFHNAFQKSGLKYNISYA SKAFTCIQMVKLVQEENLQLDVVSEGELYTALEAKFDPSRIHFHGNNKTKREIQYALESG VGYFVIDSLEEIELIDRYASDTVNVVIRVNPGVEAHTHEFIQTGQEDSKFGLSIRHGLAI QAVEKVKASKHLHLKGIHFHVGSQIEGTEAMIETAKIVLNWLNEHHIQVELLNLGGGFGI KYVEGDVSFPIEEGIAEITDAIKSESEKLNYDVPEIGIEPGRSIVGEAGITLYEVGTIKD IPEVNKYVSIDGGMSDHIRTALYGAKYQALLVNRHEEADETVTIAGKLCESGDIIIRDAM LPSSVKRGDYLAILSTGAYHYSMASNYNQMQKPPVFFLKDGKAREVIKRQSLRQLIINDT K >gi|312979643|gb|ACRM01000022.1| GENE 188 173904 - 174977 1182 357 aa, chain - ## HITS:1 COG:SA1231 KEGG:ns NR:ns ## COG: SA1231 COG0787 # Protein_GI_number: 15926979 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Alanine racemase # Organism: Staphylococcus aureus N315 # 1 356 1 356 361 534 76.0 1e-151 MTAVWSVDSKIFLRNATKVKNNQSIMAVVKNNAYHYGLEFAVRTFLEAGIHTFSTTSLKE AVRVRKLAPHATIFLMNAVYDFDTVRNNNIQMTLPSLEYYYQYKSELKDINVHLEFENLL HRSGFKNLDEIKEVLHHHENDNGSKMNIVGLWTHFGYADEFDVPEYGIEREAWLNVVNTL LNEGYQFELIHAQNSASYYREGQQLLPYHTHARVGIALYGSRPYSKLDEHEIEQALTVKG NVIQVREVNKGDYCGYSFAFEAMHDHTHLAVVDIGYGDGILKKRATHEALINGKRYPIRA LMMSHMFVEVDDDVHAQDEVILYNNDIRIDEYTFKGVGANSEQLSAMNHDSLIKEFR >gi|312979643|gb|ACRM01000022.1| GENE 189 174984 - 176135 1220 383 aa, chain - ## HITS:1 COG:SA1230 KEGG:ns NR:ns ## COG: SA1230 COG1473 # Protein_GI_number: 15926978 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 1 380 1 380 383 633 81.0 0 MSELEFVTQHRRHLHQHPELSLHEFETTQYITRFLDELNVPYEQPLETGAIAYLEGNSDH TIAFRADIDALPIFEENNVDYRSQTDNVMHACGHDGHTTALMLFVKRCKVMADQHQLPHN VVFIFQPAEETGGGANRLIKAGAFNQYPIEAVFGIHVNPFAEEGQVVIRDEEITASATEY RFFLKGLSSHVADKEQGHSCGEALIHVLNQVGQIQQYHLNGLKRNIVHMGHFNAGEAINT VPSNGYLEGTIRTYDATDLNIVKNQMNKIAKSVKLLFNVDCEVKFEEGYPATMNSPKLRH TVEKSILSANLEVIEKPLPFLFGEDFSFYGQQLAPSYFAFVGTRNEDKGFITGLHTSHLN FDEKVLIDVANYYEQILNHYGKE >gi|312979643|gb|ACRM01000022.1| GENE 190 176244 - 176963 1112 239 aa, chain - ## HITS:1 COG:SA1229 KEGG:ns NR:ns ## COG: SA1229 COG2171 # Protein_GI_number: 15926977 # Func_class: E Amino acid transport and metabolism # Function: Tetrahydrodipicolinate N-succinyltransferase # Organism: Staphylococcus aureus N315 # 1 239 1 239 239 390 88.0 1e-108 MVQHLSAQEIIQYISDAKKSTPLKVYVNGQFNDVTFPNTFKVFGSDDSKVIFCEADDWKT FYETNQSHITDLEIEMDRRNSAIPLKDLTNTNARIEPGSFIREQAIIEDGAVVMMGATIN IGAVVGEGTMIDMNATLGGRATTGKNVHVGAGAVLAGVIEPPSASPVVIEDNVLIGANAV ILEGVRVGEGAIVAAGAIVTQDVPAGAVVAGTPAKVIKQTSEVQDSKREIVAALRKLND >gi|312979643|gb|ACRM01000022.1| GENE 191 176988 - 177713 994 241 aa, chain - ## HITS:1 COG:SA1228 KEGG:ns NR:ns ## COG: SA1228 COG0289 # Protein_GI_number: 15926976 # Func_class: E Amino acid transport and metabolism # Function: Dihydrodipicolinate reductase # Organism: Staphylococcus aureus N315 # 1 241 1 240 240 367 78.0 1e-102 MKILLIGYGTMNQRVARLAEEKGHEIIGTIEPEEHQHSPYKTYHHIAEAQNEADVAIDFS NPNLLLPLLDEGFELPLVIATTGEKEKLIQKLEQLSERMPVFFSANMSYGVHALTKILEA AVPLLHDYDIELTEAHHNKKVDAPSGTLVKLYDVIKELRENVTPVYDRHERTEKREKDEV GIHSVRGGTIVGEHDVLFAGTDETITISHKAQSKDIFANGAITAAEKLNTKSNGFYTFDN L >gi|312979643|gb|ACRM01000022.1| GENE 192 177716 - 178597 1365 293 aa, chain - ## HITS:1 COG:SA1227 KEGG:ns NR:ns ## COG: SA1227 COG0329 # Protein_GI_number: 15926975 # Func_class: E Amino acid transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: Dihydrodipicolinate synthase/N-acetylneuraminate lyase # Organism: Staphylococcus aureus N315 # 1 293 1 293 295 409 73.0 1e-114 MAHIFEGVGVALATPFTNNEVDYKALEQHVQFLLDNNVKAIIVNGTTAESPTLTEEEKET VLQAVIKQVNHQVAIIAGTGTNNTAKSIQASLRAKELGVDGIMLITPYYNKTNQRGLIKH FETIANEVKLPVVLYNVPSRTNMTIDPETVETLSHNDYIVAIKDATNDFNYYEEVKKRIH QDEFALYSGNDDNVVEFYNRGGNGVISVIANVIPKEFQALYDAKQNGKEIEKDFEPIGQL LDALSVDVNPIPIKALTSHLGFGNYELRLPLLPLEKEKANVLVNAYKAFKAEE >gi|312979643|gb|ACRM01000022.1| GENE 193 178599 - 179588 1276 329 aa, chain - ## HITS:1 COG:SA1226 KEGG:ns NR:ns ## COG: SA1226 COG0136 # Protein_GI_number: 15926974 # Func_class: E Amino acid transport and metabolism # Function: Aspartate-semialdehyde dehydrogenase # Organism: Staphylococcus aureus N315 # 1 328 1 328 329 575 86.0 1e-164 MTRLAVVGATGLVGTKMLETIDRKHIQFDELVLFSSARSAGKEIEFQGKTYTVQELTEEA ASEKFDYVLMSAGGETSKEFAPIFEKAGAIVIDNSSQWRMANDVDLIVPEVNQPEFKRGI IANPNCSTIQSVVPLKVLYDAFGLKRVAYTTYQAVSGSGIKGKRDLAEGANGKAPEAYPH PIYNNVLPHIDVFLEDGYTKEEQKMIDETRKILGQPDLRVTATCARVPVQDSHSVEIDVT LDKEATVQEIKDLFENDNRVVLVDNPENNEYPLAINSTGKDEVFVGRIRRDDSLDNTFHV WCTSDNLLKGAALNAVQVLEQVIKLKGAR >gi|312979643|gb|ACRM01000022.1| GENE 194 179648 - 180850 1358 400 aa, chain - ## HITS:1 COG:SA1225 KEGG:ns NR:ns ## COG: SA1225 COG0527 # Protein_GI_number: 15926973 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Staphylococcus aureus N315 # 1 400 2 401 401 618 82.0 1e-177 MKRRVLKFGGSSVADFTKIKNIAEMLKRRVDDGEQLIVVVSAMGKTTDQLMENVSHLTTT PKDEELALLLTTGEQQTVSYLSMVLNDIGVSARAMTGYQAGIKTVGHHLKSRIAEINPET FNKEFKDKDVLVVAGFQGVNDELELTTLGRGGSDTTAVALAASNQIPCEIYTDVDGVYAT DPRILSEAKRLDYVSYEEMMEMSALGAGVLETRSVELAKNYDIPLYLGRTLSNVKGTWIM PRTEILEKKAVTGVALDTHMMHVTISYPLPDNRLLTQLFTALDEDSVNVDMISQIVNVEG LQLSFSIKDSDVQQISSILEELSTTFDALDYKINEAYVKISLIGSGMRDMSGVASKAFIT LINSNIPFYQTTTSEISISYVIDAENGNKAVEVLYDAFDI >gi|312979643|gb|ACRM01000022.1| GENE 195 181379 - 182983 1957 534 aa, chain - ## HITS:1 COG:SA1224 KEGG:ns NR:ns ## COG: SA1224 COG0488 # Protein_GI_number: 15926972 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Staphylococcus aureus N315 # 1 533 1 533 533 974 94.0 0 MLQVTDVSLRFGDRKLFEDVNIKFTEGNCYGLIGANGAGKSTFLKILSGEIDSQTGHVSL GKDERLAVLKQDHFAYEDERVLDVVIKGHERLFEVMKEKDEIYMKPDFSDEDGIRAAELE GEFAEMNGWNAEADAASLLSGLGITSDLHDKQMSELENNQKVKVLLAQSLFGDPDVLLLD EPTNGLDIPAISWLEDFLINFENTVIVVSHDRHFLNNVCTHIADLDFGKIKVYVGNYDFW YQSSQLAQKMAQEQNKKKEEKIKELQDFIARFSANASKSKQATSRKKQLEKIELDDIQPS SRRYPYVKFTPEREIGNDLLVVDGISKTIDGEKVLDNISFTMNPNDKAILIGDSEIAKTT LLKILAGEMEPDEGSFKWGVTTSLSYFPKDNSDFFEGVDMNLVEWLRQYAPEDEQTETFL RGFLGRMLFSGEEVKKKASVLSGGEKVRCMLSKMMLSSANVLLLDEPTNHLDLESITAVN DGLASFKGSIIFTSYDFEFINTIANRVIDLNQPGSLSKELPYEEYLKEIGVLQK >gi|312979643|gb|ACRM01000022.1| GENE 196 183132 - 184028 450 298 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|212640476|ref|YP_002316996.1| Uncharacterized protein conserved in bacteria containing two ribosomal protein S1-like RNA-binding domains [Anoxybacillus flavithermus WK1] # 32 284 25 275 285 177 37 3e-43 MALDKDIVGSIEFLEVLGLEGSTYLLKGPNGEQVKLNQSEINEEDEFEIGEEYSFFIYPN RSGELFATQNMPDITKDKYDFAKVLKTDRDGARVDVGLPREVLIPWEDLPKVKSLWPQSG DYVLVTLRIDRDHQMFARLASETIVEKMFTPVSNDDMQNQVLKARPYRLLRIGTFLLTED GYKVFVHESERKHEPRLGEAVEVRIIGHNEKGELNGSFLPLAHERLDEDGQVIFDLLVEY DGELPFWDKSSPEAIKEVFNMSKGSFKRAIGHLYKRKIINIETGKITLTKKGKTLIQE >gi|312979643|gb|ACRM01000022.1| GENE 197 184263 - 185213 1290 316 aa, chain + ## HITS:1 COG:SA1221 KEGG:ns NR:ns ## COG: SA1221 COG0226 # Protein_GI_number: 15926969 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 310 1 306 327 389 74.0 1e-108 MKKWQLVGTTVLGATVLLGACGGGNSGGSGSGDGKDLEGSAKGEGSSTVAPIVEKLNEKW AKDHPSATISSGQAGTGAGFEKFIAGETDFSQASRPIKDEEKQKLEDKNIKYKEFKIAQD GVTVAVNKDNDFVKELSKDQLKKIYSGEAKTWKDVDSSWPNKEIKAFSPNSSHGTYDFWE EEVMDKQDIKAQKNGDTNVIVQSVEKNKESIGYFGYNFYKQNKDKLKEVKIKGDDGKSVE PTKKTIQDGSYPLSRPLFLYVKEKSLEDNDVMREFLKFTLDDKGKSAEDAGYVASPSKVY KDEIKELDKYKKDSDK >gi|312979643|gb|ACRM01000022.1| GENE 198 185396 - 186322 1324 308 aa, chain + ## HITS:1 COG:SA1220 KEGG:ns NR:ns ## COG: SA1220 COG0573 # Protein_GI_number: 15926968 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Staphylococcus aureus N315 # 1 308 1 308 308 405 80.0 1e-113 MASNTNVREMIAKNNAKKGGFSDKIVPIILGIIAAISILTTIGILFTLITETITFFTRVS ITEFLFTKDWSPTSSDPKYGIWALILGTLKITFIGTLVAVPIGLGAAIYLSEYASDKARR IIKPILEILAGIPTIVFGFFALTFVTPLLRTFIPQLDSFNSISPGIVVGIMIVPIITSMS EDAMASVPNKMREGAFGLGSTKFEVATKVVLPAAASGVIASIVLGISRAIGETMIVSLAA GSSPTSSLTLTSSIQTMTGYIVEIATGDATFGSDIYYSIYAVGFTLFIFTLIMNLISYWI SKRYREEY >gi|312979643|gb|ACRM01000022.1| GENE 199 186324 - 187244 1323 306 aa, chain + ## HITS:1 COG:SA1219 KEGG:ns NR:ns ## COG: SA1219 COG0581 # Protein_GI_number: 15926967 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, permease component # Organism: Staphylococcus aureus N315 # 4 306 3 305 305 395 75.0 1e-110 MTATTDPRAKGLVDKNKVEKNLSSRDKKNSLNKWLFFACIVFALIVLAALLIQTLVKGVG HLTPEFFTSFSSSTPSQAGIKGALAGTLWLMITIIPISIILGVGTAIYLEEYARDNMFTS FVKICISNLAGVPSIVFGLLGLTLFVRGAGIESLSLGNTVIAAALTMSLLILPIIIVSSQ EAIRAVPNSVREASYGLGGNKWQTIRKVVLPAALPGILTGFILSLSRALGETAPLILIGI PTIFLAVPSGLFSMFTALPTQIYTWAKMPQAEFQNVASAGIIVLLVILLLMNGLAIFLRN KFSRKY >gi|312979643|gb|ACRM01000022.1| GENE 200 187322 - 188266 1256 314 aa, chain + ## HITS:1 COG:SA1218 KEGG:ns NR:ns ## COG: SA1218 COG1117 # Protein_GI_number: 15926966 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type phosphate transport system, ATPase component # Organism: Staphylococcus aureus N315 # 35 314 7 283 283 461 84.0 1e-130 MAKINVDEKKKNVEQHTNDVVDQRSNHTHPTNDTQQHNDNQSQKTTIATTNNENKKDIKP DSERKVVYSTQNLDLWYGENHALQNINLDILENNVTAIIGPSGCGKSTYIKTLNRMVELV PSVKTAGKILYREQNIFDSNYSKEKLRTNVGMVFQQPNPFPKSIYDNITYGPKIHGIKDK KLLDEIVEKSLRGAAIWDELKDRLHTNAYGLSGGQQQRVCIARCLAIEPDVILMDEPTSA LDPISTLRVEELVQELKENYSIIMVTHNMQQAARVSDKTAFFLNGYVNEYDDTDKIFSNP SDKQTEDYISGRFG >gi|312979643|gb|ACRM01000022.1| GENE 201 188273 - 188923 685 216 aa, chain + ## HITS:1 COG:SA1217 KEGG:ns NR:ns ## COG: SA1217 COG0704 # Protein_GI_number: 15926965 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate uptake regulator # Organism: Staphylococcus aureus N315 # 1 213 1 213 213 277 70.0 1e-74 MKIIRQKYEGQLDDLIKELRRLGLRVYSNVNNAIESLSEDDRNFARHVIEKDKEINKFDY DINEQVIMLITKQQPIATDLRMMMAALKISTDFERMGDNAANIAHIRLRVKITDHYVLTR LKTMGKLALLMLEDLNTAVKNEDLTLIKEIIERDKDIDDLYVNIVNTTYLIDNDPFVAGQ AHLAARNLERVGDHVRNIAESVYYYFTGEHFDKYDR >gi|312979643|gb|ACRM01000022.1| GENE 202 189023 - 190831 1968 602 aa, chain - ## HITS:1 COG:SA1216 KEGG:ns NR:ns ## COG: SA1216 COG1164 # Protein_GI_number: 15926964 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Staphylococcus aureus N315 # 1 601 1 601 604 868 73.0 0 MNTGLPLRKHVPDNEKWNLEDLFTNDEAFYNTLNDVLEKSAQFNQKYKNNLSETKIILDA LKEYEDLLIQFDRLGNYAELRLSVDTTNELAQTLNAKLSTSYGKISSLLSFVESEIMILS DDKLKELKEQFNSPHYLEKLIKRKPYQLSSEVEEVLASLSPTFQSAYELYGTTKMLDIAF ESFEHNHETYPLDYATFENEYEDSSDPEFRRKSFEAFSNALRKYQHTTAATYNQHVQQEK IEANLRGYDSVIDYLLQEQEVTREMYDRQIDVIMSDLAPVMQKYAKILQRIHNLDKMRFE DLKISVDPSYEPDISIEDSKQYIHGALGVLGDDYIKMVDNAYNHQWIDFAQNKGKDTGAY CASPYFTHSYVFISWTGKMAETFVLAHELGHAGHFTLSQKHQHLLDSEASMYFVEAPSTM NEMLMANYLFSNSNDARFKRWVIGSIISRTYYHNMVTHLLEAAYQREVYKKVDNGESLTA PVLNKLMRNVYEQFFGDAVELTDGMELTWMRQPHYYMGLYSYTYSAGLTIGTVVSQKIKK EGQKAVDAWLETLKAGGSKNPVELAKVAGVDITTNAPLKSTIVYISELVDEVEILTNEIE HN >gi|312979643|gb|ACRM01000022.1| GENE 203 191000 - 191344 322 114 aa, chain + ## HITS:1 COG:no KEGG:SH1528 NR:ns ## KEGG: SH1528 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 113 1 113 113 160 80.0 1e-38 MTIFDMPNYLWITIVAMMILTVFCTLVLKKWFSATVITFVVLAILAFFIPNFYNITFQPL LGYAAFLAIISLMISFLLWYFTRGWRRERKEKQLEKEMKKYDHDEYMYRRRDRR >gi|312979643|gb|ACRM01000022.1| GENE 204 191423 - 191545 131 40 aa, chain - ## HITS:1 COG:no KEGG:SH1529 NR:ns ## KEGG: SH1529 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: ABC transporters [PATH:sha02010] # 1 40 299 338 338 69 82.0 3e-11 MKAIKNHQVYQFEANAWCFSEGGIETTIHQLNKIEKAFRK >gi|312979643|gb|ACRM01000022.1| GENE 205 191837 - 191980 141 47 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIKIIYVIYNVDIYDTIYFDNEYINESIIECLFSLHNVRYQIIFADK >gi|312979643|gb|ACRM01000022.1| GENE 206 192656 - 193915 1192 419 aa, chain - ## HITS:1 COG:SA1207 KEGG:ns NR:ns ## COG: SA1207 COG2348 # Protein_GI_number: 15926955 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 409 1 409 419 674 85.0 0 MKFTELTVKEYETFVQNPSLESHYFQVTENIKTRENDGFEVVLLGVKDESNKVIAASLFS KIPTMGSYVYYSNRGPVMDYSDLGLVDFYLRELEKYLHQHQCLYVKLDPYWIYQIYDKDI NPVEGHEKNDALVNLFKSHGYEHHGFTTKYDRSSQVRWMGVNYLKGETPASLKKQFDSQR KRNINKAINYGVKVRFLKRDELNIFLDLYRETEARTGFVSKTDEYFYNFIDTYGDKALVP LAYIDLDDYIKSLQTSLNDKETRRDQMMSKDNKSDKQLKKIAELDKQIEHDQKELLHASE LRQTDGQILNLASGVYFANAYEVNYFSGGSSEKYNNYMGPYMMHWFMMNYCFDHGYDRYN FYGLSGDFTENSEDYGVYRFKRGFNVYIEELIGDFYKPINKPKYWLFKTLNRIRKKIKK >gi|312979643|gb|ACRM01000022.1| GENE 207 193934 - 195196 1334 420 aa, chain - ## HITS:1 COG:SA1206 KEGG:ns NR:ns ## COG: SA1206 COG2348 # Protein_GI_number: 15926954 # Func_class: V Defense mechanisms # Function: Uncharacterized protein involved in methicillin resistance # Organism: Staphylococcus aureus N315 # 1 419 1 419 420 639 78.0 0 MKFTNLTSTEFGDFTEKMPYSHFTQMTENYELKVAEKTETHLVGIKNKDNEVIAACMLTA VPVMKIFKYFYSNRGPVIDYENKELVHFFFNELSKYLKQQHCLYVRIDPYLPYQYRNHDG DITGNAGNDWFFDKMKQLGYQHEGFTTGFDPILQIRFHSVLNLKDKTVKDVLNGMDSLRK RNTKKVQKNGVKVRFLTKEELPIFRSFMEDTSETKEFSDREDSFYYNRFDHFKDRVLVPL AYIKFDEYLEELHAERQTLNKDLNKALKDIEKRPDNKKAQNKKINLEQQLKANEQKIDEA TQLQLEHGNELPISAGFFFINPFEVVYYAGGTSNKYRHFAGSYAVQWTMINYAIDHGIDR YNFYGISGHFTDDAEDAGVVKFKKGFNADVIEYVGDFVKPINKPMYSLYTTLKKIKKRLN >gi|312979643|gb|ACRM01000022.1| GENE 208 195540 - 196274 356 244 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148984260|ref|ZP_01817555.1| ribosomal protein L11 methyltransferase [Streptococcus pneumoniae SP3-BS71] # 4 220 19 238 258 141 34 2e-32 MSKLFIPYIMGNRQFLENVKLLDKSGADMIEIGIPFSDPVADGPIIMKAGHEALQNHITI DYIFDELDKHQNEINCKYVLMTYYNVILSYGEKAFFKKCDDIGVYGVIIPDLPFELIEQL KQQLNDNRVVKIISLIAMTADTNRIQNIAKHAEGFIYTVTMNATTGEDGTFHPKLKDQIK MIKSFTALPVVAGFGIRTTDHIKDLVKDVDGVVIGSEIVRRFENDDLDQTGEYLREIRQI LNNY >gi|312979643|gb|ACRM01000022.1| GENE 209 196267 - 197481 1142 404 aa, chain - ## HITS:1 COG:SA1204 KEGG:ns NR:ns ## COG: SA1204 COG0133 # Protein_GI_number: 15926952 # Func_class: E Amino acid transport and metabolism # Function: Tryptophan synthase beta chain # Organism: Staphylococcus aureus N315 # 2 398 3 399 404 679 85.0 0 MKQIQTEANELGFFGEYGGQYVPETLMPAIIELKRAYKKAKSDPKFQQEIAYYLKDYVGR ETPLTYAKSYTETLGGAKIYLKREDLNHTGAHKINNAIGQALLAKRMGKHKLVAETGAGQ HGVASATVAALFDMELIVFMGREDIKRQQLNVFRMELLGAKVEAVDEGQGTLSDAVNKAL QYWVSHVEDTHYLLGSALGPDPFPTMVRDFQSVIGQEIKSQLLEKEHRLPDAVVACVGGG SNAIGTFYPFIKDNVKLYGVEAAGRGKDTNQHALAIGKGKAGVLHGSKMYLIQDEHGQIE LAHSISAGLDYPGIGPEHSYYHDIGRVTYECASDEEAMEALVRFTKIEGIIPAIESAHAL SYVEKLAPQMKQNDILVVTISGRGDKDMETIQQYIQQRKEDKNE >gi|312979643|gb|ACRM01000022.1| GENE 210 197462 - 198112 326 216 aa, chain - ## HITS:1 COG:SA1203 KEGG:ns NR:ns ## COG: SA1203 COG0135 # Protein_GI_number: 15926951 # Func_class: E Amino acid transport and metabolism # Function: Phosphoribosylanthranilate isomerase # Organism: Staphylococcus aureus N315 # 4 206 3 204 210 205 53.0 6e-53 MNILKFCGFKTKSDILKVNSLDIDMIGFIHYPKSKRHLNIEQINYLNQFVAKHIHRVIVV VNPTYKELNTLLQQTNVNAIQFHGNEAIELIQKVKLNFKNIKIIKALPATENLNRDINQY KPWVDLFIIDTPSIQLGGTGQTFNWKILESVSQDLPYLIAGGININAIQQIEKLDLSHKG YDISSGIETNECKDKLKMETIINYVKRSLEYETDTN >gi|312979643|gb|ACRM01000022.1| GENE 211 198109 - 198888 809 259 aa, chain - ## HITS:1 COG:SA1202 KEGG:ns NR:ns ## COG: SA1202 COG0134 # Protein_GI_number: 15926950 # Func_class: E Amino acid transport and metabolism # Function: Indole-3-glycerol phosphate synthase # Organism: Staphylococcus aureus N315 # 1 259 1 259 260 303 63.0 3e-82 MTILDEIVQYKKQLLSDGYYTDKIKHIKKVDVSYKSALETTLKRESTLSIIAEIKSKSPS VKAFKDINLEHQIAKYENHGANAISILTDEKYFGGSFERLQTLTQLTHLPVLCKDFIIDP LQIDLAKRAGASIILLIVNILTNDTLQSLYHYAMSQNLEVLVEVHNKEELERAYQIKPKI IGVNNRDLKTFITKVEHTNDILEMKKEGYYYISESGITTLNDVKKIVSSGIDGLLVGGAL MNSNNISSLLPSLKLNKEK >gi|312979643|gb|ACRM01000022.1| GENE 212 198891 - 199895 1104 334 aa, chain - ## HITS:1 COG:SA1201 KEGG:ns NR:ns ## COG: SA1201 COG0547 # Protein_GI_number: 15926949 # Func_class: E Amino acid transport and metabolism # Function: Anthranilate phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 3 334 1 332 332 400 60.0 1e-111 MTLTLLNQIQSHVTLSQHETTEFIQYLINPECHTQDKVKLLQAFTNKSIQQKELTYIVKS LIHTMYSTQPEYKGSICVCGTGGDKSNSFNISTTVSFVVASADVPVIKHGNKSITSNSGS TDLLQQLHIPTTKVANVAKQVSKTHLAFISAMESYPIMKYIQPIRKLIHEPTIFNIVGPL INPFKLDYQVMGVYDASQLSMIIKTMKDLGRRRGIVLHGANRMDEATLSGDNEIYELHED GTISHYVLNARDYGIANANNIELQGGTPEENKNITIDILSGKDHSPKRNVVVLNAALALY ISNRVDSIKKGVDLAKDLIDSGKALKQYQLMKGE >gi|312979643|gb|ACRM01000022.1| GENE 213 199840 - 200469 491 209 aa, chain - ## HITS:1 COG:SA1200 KEGG:ns NR:ns ## COG: SA1200 COG0512 # Protein_GI_number: 15926948 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Staphylococcus aureus N315 # 1 187 1 187 188 243 66.0 1e-64 MILIIDNYDSFTYNLVDIVSQLDDVIVKYPDDKDVLNYVNQSDGLIISPGPGHPLDSNHL LNIIERYKSLPILGVCLGAQAITCYYGGHVIQGEKVMHGKVDILTVIQQTKLYNNLANQF NIMRYHSLISDEISFPSQLIITGRTKDCIQSYETKNGLHFGIQYHPESFATDQGQQIIKN FIDIVKERGKYDDLNITQPNSKPCNTLTT >gi|312979643|gb|ACRM01000022.1| GENE 214 200466 - 201875 1194 469 aa, chain - ## HITS:1 COG:SA1199 KEGG:ns NR:ns ## COG: SA1199 COG0147 # Protein_GI_number: 15926947 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Staphylococcus aureus N315 # 1 469 1 468 468 575 64.0 1e-164 MKIYYEILRANITPEVLGKLKKNKIILESTSQKQVKGRYSIVAFESYGSVVLNNDLLTIK TKKQNIEITEKSYEYLKDYINQFNIQITDEKLKHLPFVSGFIGTCSFDLIRHEFPMLKQQ SIQEIKDSNDIEFHMIEDVYVFDHYKDELYVIATNQFSEVEQKDLEERVKNRVKALSQIK AYTDDYIHPPTPSNIMPNVSDDEFINTIKQLKELIKEGDMFQVVPSRIYSYNHYFKNNTL QLSYQLYQNLKRRNPSPYMYYINMTTQIIIGSSPESFVAVQDGTVITNPIAGTIKRGKTI KEDKQNAEQLLSDEKELSEHRMLVDLGRNDIHRVSRTGSSKITKLMKIEKYEHVMHIVSE VRGEIKRELSPMTVIANLLPTGTVSGAPKLRAIRRIYETYPYKRGLYSGGVGYINCNQNL DFALAIRTMLIDDTTVKVEAGCGVVYDSVPEKELEETLLKAKSLLEVTP >gi|312979643|gb|ACRM01000022.1| GENE 215 202363 - 203397 1241 344 aa, chain - ## HITS:1 COG:SA1198 KEGG:ns NR:ns ## COG: SA1198 COG1363 # Protein_GI_number: 15926946 # Func_class: G Carbohydrate transport and metabolism # Function: Cellulase M and related proteins # Organism: Staphylococcus aureus N315 # 5 343 4 342 343 530 77.0 1e-150 MESKILELIQNLTNINSPSGNAYKAISYVKQKVEHLGYSTQLTNKGALIITVEGEDNERQ RCITAHVDTLGAMVKEIKEDGRLTIDLIGGFKYNAIEGEYCQIETDSGETYTGTICLHET SVHVYRENEKIPRDIEHMEVRIDEKTTSKQETEGLGIEVGNFISFDPRTEITSSGFIKSR HLDDKASVAMILDLLERIKNEQIKLPHTIQFYISNNEEIGYGANASISNKIVEFIAFDMG ALGEGQSSDEYTVSICAKDASGPYHKELKTHLVNLCKFNHIPYKIDIYPYYTSDASAALK AGADIKHGLFGAGIESSHALERTHIDSIHAAQNLLYAYCLSSIN >gi|312979643|gb|ACRM01000022.1| GENE 216 203533 - 204624 1350 363 aa, chain + ## HITS:1 COG:SA1197 KEGG:ns NR:ns ## COG: SA1197 COG0287 # Protein_GI_number: 15926945 # Func_class: E Amino acid transport and metabolism # Function: Prephenate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 362 1 362 363 433 61.0 1e-121 MKNILFVGLGLIGGSLASNLKFYQSDFIISAYDTDVTQLDKAMSIGIIDKKINDYALGVK EADIIIFATPVHQTAIYLNSLPNYKTKSHLIVTDTGSTKLIIQNFEKRLLESNIHLVSGH PMAGSHKSGVLNSKKHLFENAYYILVYDDEHNTQAAKTLQDLLSPTQAKFIVTNAKEHDY VTGIVSHVPHIIASSLVHLSSSHAKDHALVKQLAAGGFRDITRIASSNAEMWKDILLSNK QNIISLLEDMQTNIKDMIVKLKNEEEQQIYQFFDEAKIFRDQLPLKQHGVVNVGYDLYID IPDKTGMINEVTSTLSLHNISIRNLKILEVREDILGALQVTFKTPKDRELGIIALNEFDT YIP >gi|312979643|gb|ACRM01000022.1| GENE 217 204676 - 205938 1159 420 aa, chain - ## HITS:1 COG:SA1196 KEGG:ns NR:ns ## COG: SA1196 COG0389 # Protein_GI_number: 15926944 # Func_class: L Replication, recombination and repair # Function: Nucleotidyltransferase/DNA polymerase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 420 1 420 420 669 74.0 0 MYDYNLLEDRDILCVDQKSFYASVSCIEKGLDPLTTKLAVVADTKRQGSVVLAATPKLKE LGIKTGSRLFEIPQRNDIYIINPSMRRYLEISLEISKIALKYVPREDLHQYSIDEFFMDV TNSYHLFNTTVYSFAKCFQKEVLDKTGIYCTIGIGSNLLLSKVAMDIEAKHIKEGITEWR YHDIPDKLWRISPLKSFWGINKKTEIKLNKKGIITIGDLAHYPHRYLKKDFGILGTDMHL HANGIDQSKIREKSKINNPAICKSQILMRDYQFKETKIVMQELIEDVTCRLRERKQLART IHFSFGYTEGGGIHKQHTLTDATNLEQDIFKVVNDYANQLCDKHALYRTLSVSLTQFIHE ENRQLNLFVNEYKRQRDENLAKTIDTLQRKYGKGIVSKAISYTASGTKHNRLGLMAGHKM >gi|312979643|gb|ACRM01000022.1| GENE 218 206087 - 206272 420 61 aa, chain + ## HITS:1 COG:SAS044 KEGG:ns NR:ns ## COG: SAS044 COG1942 # Protein_GI_number: 15926943 # Func_class: R General function prediction only # Function: Uncharacterized protein, 4-oxalocrotonate tautomerase homolog # Organism: Staphylococcus aureus N315 # 1 61 2 62 62 94 88.0 7e-20 MPIVNVKLLEGRSDEQLKNLVTEVTNAVEKTTGANREAIHVVIDEMKKNHYGVGGVRKSE Q >gi|312979643|gb|ACRM01000022.1| GENE 219 206351 - 207334 1335 327 aa, chain - ## HITS:1 COG:SA1195 KEGG:ns NR:ns ## COG: SA1195 COG1316 # Protein_GI_number: 15926942 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 3 326 4 327 327 442 73.0 1e-124 MTEEKDNTILRRQSGTTIPSKRRKKKKLRKLPFVILIIVVLLIVMITYVVHGYQSGMKYA QEHAKDIKIHKFNGAVKNDGKITILMLGADQANGGKSRTDSIMVVQYDYIKKKMKMMSIM RDIYAEIPGYDKYKINAAYSLGGPELLRQTLNKNLGINPEYYAVIDFTGFEKMIDELEPN GVPIDVEKDMSENIGVSLKKGHHRLNGKELLGYARFRHDPEGDFGRVRRQQQVMQTLKKE LITPSTIVKLPKVAGILRGYINTDMPNSAIFQTGLSFGIRGDKNVETLTVPLKNSYQNIN TNNDGSALDIDKEKNKKAIESFLKDNK >gi|312979643|gb|ACRM01000022.1| GENE 220 207475 - 207990 544 171 aa, chain + ## HITS:1 COG:SA1194 KEGG:ns NR:ns ## COG: SA1194 COG0225 # Protein_GI_number: 15926941 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptide methionine sulfoxide reductase # Organism: Staphylococcus aureus N315 # 1 165 1 165 169 257 77.0 6e-69 MNINTAYFAGGCFWCMTKPFDQFEGIESVTSGFMGGSVKNPTYEQVKSGTTGHYETVKIE YDVALFSYHKLLEIFFSVIDPLDAGGQFQDRGSQYQTAIFYTNDDQRKVAINYIKDLEQT MHSDKAIATKVLPASNFYKAEEYHQNFYKKNPERYAQEQRDRANYDPRSNS >gi|312979643|gb|ACRM01000022.1| GENE 221 208028 - 210550 2647 840 aa, chain - ## HITS:1 COG:SA1193_2 KEGG:ns NR:ns ## COG: SA1193_2 COG2898 # Protein_GI_number: 15926940 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 246 840 1 595 595 847 71.0 0 MTEEHKNRLISILKVVFAVTLFIVVVATLYHELSHINFKQTLEAFSKINRWFLIGLFICG GASMLLLSLYDVILVKTLKLSIPLNKVFRLSYIINAFNAIVGFGGFIGAGFRTFIYKNYT SDRKRLLHAISIILVSMLTGLSFLSILVVLHIFDASHILDKVRFVKWVLYVVALFLPIFI VYTVVKPVTEHNKLVGIYCTLVSSIEWIAAAVVLYLSAWIIDIHVAFTTLLGIFIIAALS GLISFIPGGFGAFDLVVLLGLKSLDIPEEKILIALLLYRFAYYFVPVIIALILSTFEFGN SARKYFEESKYFVPAKDITSFILSYQKDIISKIPAFALSILALLTSFIFFINNVTIVYDG LYDADHFIYYIMLSIHTSACLILLVNVRGIYKQSKRAIIYSMISLVLIFLATLYTYASIM LLTWLIIIFILLILAYRRAKVFKRPFRLKNLIFTLVISVIVLYINHFIISETLYALDLYH LEMDTSLLKYYFWLTVVVVILLIVGIAWLFGRRFERPHQFQEFSQCKSIIETYGGNYLSH LIYSGDKDVFMHDSEQAFLMYRYKSNALVVLGDPIGNTASFQSLLDDFYSYAEKLGYDVI FYQVSDRFMPLYHNFGNQFFKLGEEAIIDLTQFTTSGKKRRGFRATLNKFNDLNIKFEII EPPFSKAFIEELRKVSDKWLDGRTEMHFSVGQFTEQYLDKAPIGIMKNEEGKIIAFCTLM PTYYNEAISVDLIRWLPELDLPLMDGLYLHMLLWGKEKGYKAFNMGMATLSNVGQLDYSY LRERIAGRVFEHFNGLYRFQGLRRYKEKYSPQWEPRFLVYRKDSSLWYSMLKVMRVIRHK >gi|312979643|gb|ACRM01000022.1| GENE 222 210756 - 211985 1337 409 aa, chain - ## HITS:1 COG:SA1192 KEGG:ns NR:ns ## COG: SA1192 COG0628 # Protein_GI_number: 15926939 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 12 399 9 396 402 529 71.0 1e-150 MSMDHNKVEGKKANKLSFSETRFMKFLGGKDLLFALVSLVLLGITIFIFDKISYVFQPFV IIFNTIAAPIILSLILYYLLNPVINLMERYNIPRLLAITIVFLVIIGGATLIIDLLIPVI GDQIKQLANNFPKYIEKFNRAIDKVTHMSILSSFYNQIQDWLDSTSKKIPSLTSDYFSGF GTKIRTFAEAVVNVGVVIATTPFVLFFMLKDGTKFRDYTTKIVPPKFRKDYHDLLEKMSV QVGSYIQGQIIVSFCIGILLFIGYSIIGLDYGLVLASIAAVTSVVPYLGPTIAISPAIII AIITSPFMLLKLIIVWTLVQFIEGHFISPNIMGKTLKIHPLTIIFILLSAGNLLGIVGVI LGIPGYAILKVLVSHIFLLFKRRYNKYYGDDAGQYEIKKEEHKNYTEAE >gi|312979643|gb|ACRM01000022.1| GENE 223 212049 - 212903 968 284 aa, chain - ## HITS:1 COG:SA1191 KEGG:ns NR:ns ## COG: SA1191 COG3711 # Protein_GI_number: 15926937 # Func_class: K Transcription # Function: Transcriptional antiterminator # Organism: Staphylococcus aureus N315 # 1 280 1 281 283 312 63.0 5e-85 MSKYHISKILNNNVIICINSNQEVILIGKGIGFNKKPGMVVDDNASIEKVYKLDQKQQQE YYKSLVEIADEEVLQAIIESVNYITSTIYMNDDKQLVIALTDHIIFAYKRLKQNQIISNP FAMETKHLYSEAYDIATQVIQRLNEKLDVTFPEDEIGFIALHIASNKEDLPMSEISLINK MISKCVLIIENDIGYPVNPRTVQYQRFIRHIQFLIRRLNKKEYVHAQDEFINMVKTYYPN CYSTAYKISKVIQKNLDIDVDDSEIVYLALHIYHFQSQNNTQNE >gi|312979643|gb|ACRM01000022.1| GENE 224 213033 - 214493 826 486 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145629959|ref|ZP_01785741.1| 50S ribosomal protein L21 [Haemophilus influenzae 22.4-21] # 13 452 4 443 456 322 40 7e-87 MRDFDSLIPDWFKSVVQVGNDLIWSQYLIGLLLTVGIFFTISSKFVQLRMLPEMFKALVE KPETLKNGEKGISPFQAFAISAGSRVGTGNIAGVATAIVLGGPGAVFWMWIIAFIGAASA FIEATLAQVYKVHDKDGGFRGGPAYYITKGLNQKWLGITFAVLITVTFAFVFNTVQSNTI AESLRTQYHISPVITGIILAVITAIIIFGGVRSIATLSSLIVPIMAIVYVGIVLVILLMN FDQIIPMIGTIIKSAFGMEQVAGGAVGTAILQGVKRGLFSNEAGMGSAPNAAATAAVPHP VKQGLLQSLGVFFDTMLVCTATAIMILLYSGLKFGEKAPQGVEVTQSALNEHLGSPGGIF LTVAITLFAFSSVVGNYYYGQSNIEFLSKNKAILFIFRCLVVVLVFTGAVVKTETVWSTA DLFMGLMAIVNLVSIIGLSNIAFAVMKDYIQQKRAGLKPVFKPENLEINLFGIESWGRED KISKKH >gi|312979643|gb|ACRM01000022.1| GENE 225 214703 - 217102 2926 799 aa, chain - ## HITS:1 COG:SA1189 KEGG:ns NR:ns ## COG: SA1189 COG0188 # Protein_GI_number: 15926935 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit # Organism: Staphylococcus aureus N315 # 1 799 1 800 800 1222 82.0 0 MSEIIQDLSLEDVIGDRFGRYSKYIIQERALPDVRDGLKPVQRRILFAMYSSGNTYDKNF RKSAKTVGDVIGQYHPHGDSSVYDAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYT EAKLSQLSEELVRDINKETVSFVPNYDDTTLEPMVLPARFPNLLVNGSTGISAGYATDIP PHNLDEVIQATLKYIDHPNISVNQLMKYIKGPDFPTGGIIQGIDGIKKAYETGKGKIVVR SKVEEEALRNGRKQLIVTEIPYEVNKNSLVKRIDELRADKKVDGIIEVRDETDRTGLRIA IELKKDVNSESIKNYLYKNSDLQITYNFNMVAISDGRPKLMGLREIIDSYLNHQIEVVAN RTTYDLNHAEKRMHIVEGLMKALSILDEVIALIRHSKNKKDAKDNLVKEFDFTEAQAEAI VMLQLYRLTNTDIVALEEEHEELQTLIEEYRNILDNHDALLNVIKKELTEIRKRFKTSRL SSIEAEISEIKIDKEVIVPSEEVVLSMTRHGYIKRTSTRSFNASGVTEVGLKEGDSLLKY QTVNTQDTALVFTNKGRYLFIPIHKIADVRWKELGQHVSQIVSLEENERIIDVFNEKTFD GKAFYIIATRNGMIKKSNQSLFKTTRFNKPLIATKLKNEDEVVNVLRITQEQMIIVITHK GMSLTYSTEELSDTGLRAAGVKSINLKDEDYVIMTDTVDKNNSIIMATQRGAIKRIAKDI LQDAKRAQRGITLLKELKKNPHRIVAAHVVRDETYYTLYSDKHAETGEISRIHLSEQYTN GSFVVDTNEFGNVKSMIIN >gi|312979643|gb|ACRM01000022.1| GENE 226 217099 - 219099 2536 666 aa, chain - ## HITS:1 COG:SA1188 KEGG:ns NR:ns ## COG: SA1188 COG0187 # Protein_GI_number: 15926934 # Func_class: L Replication, recombination and repair # Function: Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit # Organism: Staphylococcus aureus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gi|312979643|gb|ACRM01000022.1| GENE 227 219301 - 219912 753 203 aa, chain + ## HITS:1 COG:SA1187 KEGG:ns NR:ns ## COG: SA1187 COG0344 # Protein_GI_number: 15926933 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 203 1 202 202 271 82.0 7e-73 MMMIVLMLILSYLIGAIPNGYVIGKVFFKKDIREFGSGNTGATNSFRVLGKPAGFIVTFL DIFKGFITVFFPLWLPVHAHGPISTFFTHGLIVGIFAIIGHVYPIYLKFKGGKAVATSAG VVLGVNPILLLILAVIFFGILYLTKYVSLSSIIAAISCVIGSLVIHDYILFGMSAFVSII LIFRHRSNIVRIFKGEEPKIKWM >gi|312979643|gb|ACRM01000022.1| GENE 228 220072 - 220371 450 99 aa, chain + ## HITS:1 COG:SA1186 KEGG:ns NR:ns ## COG: SA1186 COG4841 # Protein_GI_number: 15926932 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 97 1 97 98 129 72.0 1e-30 MKIKLTDEAVEWFKNELDLPEENKVLQFYVRYGGEFQLKQGFSPAFRVEPSNDVEIGYHE NYNDLIIVVSEDDLWYFEDHEVLVEKVDHEDEIVYSTTN >gi|312979643|gb|ACRM01000022.1| GENE 229 220420 - 220890 513 156 aa, chain - ## HITS:1 COG:SA1185 KEGG:ns NR:ns ## COG: SA1185 COG0824 # Protein_GI_number: 15926931 # Func_class: R General function prediction only # Function: Predicted thioesterase # Organism: Staphylococcus aureus N315 # 1 153 1 153 155 244 80.0 3e-65 MIYSMTEIEARYQETDKMGVIYHGNYATWFEVARTDYIRKLGFSYADMEKEGIISPVVDL QVQYKKSIFYPEKVKVKTWVEHYSRLRSTYCYEVYNEKGELATTGSTQLLCIKASDFRPI RLDRYFPEWHQVYSKVEALNNEGKELEITQRCDLNI >gi|312979643|gb|ACRM01000022.1| GENE 230 221086 - 223791 3492 901 aa, chain - ## HITS:1 COG:SA1184 KEGG:ns NR:ns ## COG: SA1184 COG1048 # Protein_GI_number: 15926930 # Func_class: C Energy production and conversion # Function: Aconitase A # Organism: Staphylococcus aureus N315 # 1 901 1 901 901 1626 89.0 0 MASNIKEQAKKSFEVRGKSYTYYDLKSLEEQGLTKISKLPYSIRVLLESVLRQEDDFVIT DDHIKALAHFGKEGNEGEVPFKPSRVILQDFTGVPAVVDLASLRKAMNDVGGDINKINPE VPVDLVIDHSVQVDSYANPRALERNMKLEFERNYERYQFLNWATKAFNNYNAVPPATGIV HQVNLEYLAKVVHVRDVDGEQTAFPDTLVGTDSHTTMINGIGVLGWGVGGIEAEAGMLGQ PSYFPIPEVIGVRLTNSLPQGSTATDLALRVTQELRKKGVVGKFIEFFGPGVVDLPLADR ATIANMAPEYGATCGFFPVDEESLKYMKLTGRSEEHVELVKAYLQQNNMFFTSDKEDPQY TDVINLDLSTVEASLSGPKRPQDLIFLSDMKKEFEKSVTAPAGNQGHGLEQSEFDKSAHI QFNDGSETTMKTGDIAIAAITSCTNTSNPYVMLGAGLVAKKAVEKGLKVPEYVKTSLAPG SKVVTGYLRDSGLQKYLDDLGFNLVGYGCTTCIGNSGPLLPEIEKAIAKEDLLVTSVLSG NRNFEGRIHPLVKANYLASPQLVVAYALAGTVDIDLQNEPLGKAKDGQDVYLNDIWPSIK EVADTVDSVVTPELFKEEYKNVYNNNEMWNEIDVTDSPLYDFDPNSTYIQNPTFFQGLSK KPGTIEPLKDLRVMGKFGDSVTTDHISPAGAIGKDTPAGKYLLNHDVPIRDFNSYGSRRG NHEVMVRGTFANIRIKNQLAPGTEGGFTTYWPTDEIMPIYDAAMKYKEDGTGLAVLAGND YGMGSSRDWAAKGTNLLGVKTVIAQSYERIHRSNLVMMGVLPLQFKDGESADSLGLNGRE EISVDINEDVQPHDIIKVHAKKESGEVVDFDVIVRFDSQVEIDYYRHGGILQMVLRNKLA Q >gi|312979643|gb|ACRM01000022.1| GENE 231 224163 - 225809 2198 548 aa, chain - ## HITS:1 COG:SA1183 KEGG:ns NR:ns ## COG: SA1183 COG1292 # Protein_GI_number: 15926929 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Choline-glycine betaine transporter # Organism: Staphylococcus aureus N315 # 1 547 1 547 548 884 84.0 0 MNSSSESSKKGKKFSPVFIYSAIIVAIIVLIGAIVPEQFDSITSSISGWITDKLGWYYLI LTTIIVFFCVFLIFSPIGKLKLGKPDDKPEFNTISWFAMLFSAGMGIGLVFYGAAEPMSH FAAPPTASPKTTEAFTESLRSTFFHWGFHAWAVYGVVALALAYAQFRKDEPGLVSRTLRP LLGDKVEGPIGTIIDVLSVFATVVGVAVSLGMGALQINGGLNYLFGVPNNVWVQSLIIVV VTILFIISAWSGLSKGIQYLSNANIGLGTILMIVALIVGPTVLILNMFTSSIGSLFNTFL FNSFDTAALNSQKREWMSSWTLYYWGWWLSWSPFVGVFIARVSKGRSIREFISGVLLVPA LISFLWFSVFGVLGIEMGKKHSELFKMSAETQLFGVFNHLPLGMVLSLVALVLIGSFFIT SADSATFVLGMQTTYGSLEPSNVVKVTWGIAQSLIAFILLLAGGGDGAEALGALQSAAII SALPFSFVVILMMISFYKDANQERKFLGLTLQPNKHRLKEYIEYQQKDYESDILEKRQNR RNAEKAEQ >gi|312979643|gb|ACRM01000022.1| GENE 232 226025 - 226381 471 118 aa, chain + ## HITS:1 COG:SA1182 KEGG:ns NR:ns ## COG: SA1182 COG1970 # Protein_GI_number: 15926928 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Large-conductance mechanosensitive channel # Organism: Staphylococcus aureus N315 # 1 118 1 120 120 144 78.0 5e-35 MLKEFKEFAFKGNVLDLAIAVVIGAAFNKIVSSLVTYIIMPLIGKLFGSVDFAKDWQLWG IKYGLFIQSIIDFIIVAFALFIFVKIANTIMRKEEPEEEIDTNTVLLTEIRDLLKTNK >gi|312979643|gb|ACRM01000022.1| GENE 233 226857 - 227234 305 125 aa, chain - ## HITS:1 COG:BH0682 KEGG:ns NR:ns ## COG: BH0682 COG3666 # Protein_GI_number: 15613245 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Bacillus halodurans # 1 90 274 362 522 113 63.0 7e-26 MRMKGDYMKNGQLKPGYHLQIATNSQFVLSYHVYQNLTDTRTMIPFLNSIQETYGHLPEY IVADAGYGSEPNYMAIIDDFNRTSLITYGMLIKDKTKKYKVTSLILKIGIMTKLTMNTFV QTKSD >gi|312979643|gb|ACRM01000022.1| GENE 234 227292 - 227546 134 84 aa, chain - ## HITS:1 COG:no KEGG:SE0076 NR:ns ## KEGG: SE0076 # Name: not_defined # Def: putative transposase # Organism: S.epidermidis # Pathway: not_defined # 2 83 171 252 553 109 87.0 3e-23 MLYHEWVTNKIITEIKEDRDNDLTKKEIDLIGSHFDKEIEDLNQHIDNEKWTKIRKQIRL KRTKIKKYKKQINNYSERKHKYEG >gi|312979643|gb|ACRM01000022.1| GENE 235 227595 - 227795 230 66 aa, chain - ## HITS:1 COG:SA1603 KEGG:ns NR:ns ## COG: SA1603 COG3666 # Protein_GI_number: 15927359 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 54 63 116 116 91 79.0 3e-19 MWLSQNQNPSYKMINRFRVNPKVDALLESLFIQFHSQCLKQHLIDEQVIFIDGTKVEANA NRYTFV >gi|312979643|gb|ACRM01000022.1| GENE 236 227817 - 228053 286 78 aa, chain - ## HITS:1 COG:SA1603 KEGG:ns NR:ns ## COG: SA1603 COG3666 # Protein_GI_number: 15927359 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 25 78 1 54 116 97 85.0 6e-21 MYKDYNMTQLTLPMETSILIPTNDISRHVNDIVETIPKTEFDKFRHHRGATSYHPKMMLK VILYAYTQSVFSGRKIEK >gi|312979643|gb|ACRM01000022.1| GENE 237 228116 - 228250 98 44 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKYFNVKLHINTECFGETLEGTGQAEDYRLKLSPKKASQQYVVL >gi|312979643|gb|ACRM01000022.1| GENE 238 228329 - 231364 2943 1011 aa, chain - ## HITS:1 COG:SA1181 KEGG:ns NR:ns ## COG: SA1181 COG0419 # Protein_GI_number: 15926927 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA repair # Organism: Staphylococcus aureus N315 # 1 1009 1 1007 1009 632 42.0 1e-180 MKPIKLTLHNFGPFLHEMIDFTQIKNDQLFLISGKTGSGKTMIFDAIVFSLFGKASTEGR SEAGLRSHFAEAKSPMWVEYEFQLNKKYFKIIRQGAFTKEGNTSQTPGKLDVYEYDSKSE TYELRESKISVGNQYIKSLLGVNAEQFRQLFILPQGEFKKFLVSNSTDKQGILRTLFNSI RFEEIQKLLQSEVKEEKKQIEKRYNQIKLLWEDIEAFDDEQLIQFKQIHHMKTQELIQTI PDFRAIGHQIEEKRLHLKNEQNEQLLSITKRIDLNKTLEQQLSELKEYHQLKHQLDEQMD DINALKVKLNRLNDAGMLFNLYDQQHFKEEKRQTIKTKIIETENKISQLNNKINMLEKER KQLDKMSDSYHLKSESLEQSKPFYNYLNKYQQAFKEQEHIIHSYNEMMKEQEQLINKEHK MSKSIDSYKVDNKAIDELTEQIYQLQKQLDEQQNLKDKYEKQVSLKRQYHQHSKEVQNLK NDIDTLNQQLGIIDKRNIDLNDKQTFIIEIQSALRIGDTCPICGNEIESLNQHIDFETIN QNHQLLDKLSNEINEKKQHLSKSEATCELLSQSISDLGEIEYKSINLDQIKEKLQSAKSE KIQLQQQLEELDKLQQKFHTLQQEKHQQELKLEKLASQKRQNQTLIQDFEINTGYSSIET FKNYYLSLRKEIDEYHQHVNDTNKNMQSYQNALALENNSVDNYLATSKELQKELDYFATT IRKEMKRLGLENEDEIKKLKQELQNKEHIEKRINQFDKEQHKYNVEIERLTRLTSEKELE DISNLEMQKEHIEEKYNQYVNDVVSIQYKIKKNDEKFAKIEKHIHYLDEELKEQQQIFNL SEVLSGKNHQKLSLENYVLIYYLERIIHQANIRLDIMSGRRYQLKRRESISQGYSGLEID VFDLYSNKSRHISSLSGGETFQASLALALGLSEVVQQESGGITLESMFIDEGFGTLDQET LETSLDTLLNLKTSGRMVGIISHVSELKQRIPLILEVNTNQYQSYTKFKWK >gi|312979643|gb|ACRM01000022.1| GENE 239 231366 - 232490 857 374 aa, chain - ## HITS:1 COG:SA1180 KEGG:ns NR:ns ## COG: SA1180 COG0420 # Protein_GI_number: 15926926 # Func_class: L Replication, recombination and repair # Function: DNA repair exonuclease # Organism: Staphylococcus aureus N315 # 1 366 1 365 373 443 59.0 1e-124 MKIIHTGDWHLGKILNGKQFLEDQSFILEQFIQCLKDEKPEVVVISGDIYDTTYPSKETI YLFENAIHTINIDMNIPMIISNGNHDGKERLNYGASWFEHSKLFIRTKLKHMNQPIVFND VHFYVLPFATISEVKEFFKDASIQTYQQATEKCINYIVENLNKEKINILIGHLTINGGKT SDSERPLTIGTVESVTKSCFNVFDKVLLGHLHHPFSIKDDIIDYSGSLLQYSFSEINQPK GYKRLVIKDKNEISTSFVQLKPLRELEVVEGEYDEVIQGHIQPKNKDNYIHFKLKNMSYI SDPMIHLKQLFPNTLALSNITFENEGPLHQTQIQQQDDQTIIKQFYKMITDNEMTKYQEE KINNLITLVSNKEV >gi|312979643|gb|ACRM01000022.1| GENE 240 232651 - 233118 362 155 aa, chain - ## HITS:1 COG:SA1179 KEGG:ns NR:ns ## COG: SA1179 COG4846 # Protein_GI_number: 15926925 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Membrane protein involved in cytochrome C biogenesis # Organism: Staphylococcus aureus N315 # 1 142 1 142 155 185 77.0 2e-47 MAYLVFSIVFALFMGIVVIVIRMKAQKFPVNEKKIILPPIFMSTGALMYVIPYFRLTGAE ILESIILGVIFSSVLIWTSHFEVQGAEVYMKRSKAFPIILISLLIIRTIIKIFISSSIDP GEIGGMFFLLAFSMIVPWRLAMLYKYKNVKKSLVS >gi|312979643|gb|ACRM01000022.1| GENE 241 233251 - 233493 285 80 aa, chain - ## HITS:1 COG:SA1178 KEGG:ns NR:ns ## COG: SA1178 COG3763 # Protein_GI_number: 15926924 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 80 1 80 80 96 90.0 1e-20 MATWLAILLIIVALIIGLVGGFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKI NQMMTMMNKNMDQNMKSSKK >gi|312979643|gb|ACRM01000022.1| GENE 242 233722 - 235710 2927 662 aa, chain - ## HITS:1 COG:SA1177 KEGG:ns NR:ns ## COG: SA1177 COG0021 # Protein_GI_number: 15926923 # Func_class: G Carbohydrate transport and metabolism # Function: Transketolase # Organism: Staphylococcus aureus N315 # 1 662 1 662 662 1152 85.0 0 MFNEKDQLAIDTIRALSIDAIEEANSGHPGLPMGAAPMAYTLWTRHLNFNPQSKDYFNRD RFILSAGHGSALLYSLLHVSGSLELEELKQFRQWGSKTPGHPEFRHTDGVEVTTGPLGQG FAMSVGMALAEAHLGGKFNKGDINVVDHYTYVLASDGDLMEGISHEAASFAGHNQLDKLI VLYDSNDISLDGELNKSFSEDVKQRFESYGWNHILVKDGNNLEEIDNAITKAKQQNGPTL IEVKTIIGYGAPNVSGTNGVHGAPLGTDERKLTFEAYGLDPEKRFNVPEEVYEIFQTTML KRANEHEDEWKEKLETYTEKYPELAKEFKLTISGKLPENYKDELPKFSSDHNAATRADSG EIIQAISKSVPSFFGGSADLAGSNKSNVKEATDYNPNTPEGKNVWFGVREFAMGAAVNGM AAHGGLHPYGATFFVFSDYLKPALRLSAIMGLNATFIFTHDSIAVGEDGPTHEPIEQLAG LRAIPNMNVIRPADGNETRVAWEVALESKQTPTSLVLTRQNLPYLDVDEETVEEGVRKGA YIVFETETKPEYLLLATGSEVSLAIEAAKDLDKQGKGVRVVSMPNWFAFEQQSDEYKESV IPKELTKRVAIEMASPLGWHKYVGTEGKVIGIDGFGASAPGDLVVEKYGFTKENILNQIR TF >gi|312979643|gb|ACRM01000022.1| GENE 243 235812 - 236051 386 79 aa, chain - ## HITS:1 COG:SA1176 KEGG:ns NR:ns ## COG: SA1176 COG4224 # Protein_GI_number: 15926922 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 77 1 77 79 69 76.0 1e-12 MSNNNLNIDRINELAKKKKEQGLTEAEAKEQSKLRKQYLDSFREGFKQQIESTKVIDPEG NDVTPEKLKKIQERKKNDQ >gi|312979643|gb|ACRM01000022.1| GENE 244 236238 - 236471 221 77 aa, chain - ## HITS:1 COG:no KEGG:SH1567 NR:ns ## KEGG: SH1567 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 77 1 77 77 71 54.0 1e-11 MLSNRTSNIIKNIIVLVVSCIVFLVFFTNLYQNAHTEHMYEITDHTIPKKAILNDDYKND IPNNTEQTDYKVFALVK >gi|312979643|gb|ACRM01000022.1| GENE 245 236615 - 237235 974 206 aa, chain + ## HITS:1 COG:SA1174 KEGG:ns NR:ns ## COG: SA1174 COG1974 # Protein_GI_number: 15926920 # Func_class: K Transcription; T Signal transduction mechanisms # Function: SOS-response transcriptional repressors (RecA-mediated autopeptidases) # Organism: Staphylococcus aureus N315 # 1 206 1 207 207 352 91.0 2e-97 MRELTKRQSEIYDYIKHVVQIKGYPPSVREIGEAVGLASSSTVHGHLSRLEEKGYIRRDP TKPRAIEIVSDQNNDMTREETIYVPVIGKVTAGVPITAVENIEEYFPLPEHLTSTHNSDV FILNVIGESMIEAGILDGDKVIVRSQTIAENGDIIVAMTEDDEATVKRFFKEKNRYRLQP ENSAMSPIYLDNVTVIGKVIGLYREL >gi|312979643|gb|ACRM01000022.1| GENE 246 237317 - 237385 56 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MPTKKNKKKDILDKVKEILNKK >gi|312979643|gb|ACRM01000022.1| GENE 247 237439 - 238464 178 341 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764795|ref|ZP_02171848.1| ribosomal protein L30 [Bacillus selenitireducens MLS10] # 224 339 222 332 336 73 38 1e-11 MNIIKKFLLFTAIFLLFIIIKPIEENQFFINLQNNVRDKVEVLLNEDTSFKNNVLKVPKK QEFAVNNIQLNMSQKEVENKIGRPKRVTSNEYGTKWYTYYNDDYQNFLMVSYINNKVNAL FSNQNIITSKSKIKYNTPKKVVEQRLGKPVDKITKGRYRFVVKNNEYDVFYKDHIYTTAF YDKHNKNNLTGLLQVSESMENRLQKQYGAPSTTLEKSFEYQNFDLVNAERKQHGLNTLDY SKKISHTARKHSEDMVKNNYFDHTDLNGHSPFDRMKRDGIQFNAAAENLAYGQQSSIYAH EGLMNSLGHRENILNTHVNTLGVGVDFNKNRQPFWTENYAG >gi|312979643|gb|ACRM01000022.1| GENE 248 238479 - 239456 1225 325 aa, chain - ## HITS:1 COG:SA1172 KEGG:ns NR:ns ## COG: SA1172 COG0516 # Protein_GI_number: 15926918 # Func_class: F Nucleotide transport and metabolism # Function: IMP dehydrogenase/GMP reductase # Organism: Staphylococcus aureus N315 # 1 325 1 325 325 611 92.0 1e-175 MKIFDYEDIQLIPNKCIVNSRSECDTTVQFGPKTFKLPVVPANMQTVMNESLAEWFAEND YFYIMHRFNEVGRIPFIKKMQNKGLFASISVGVKETEFEFIEKLKTEHLIPEYITIDIAH GHANSVINMIKHIKKHIPQSFVIAGNVGTPEGVRELENAGADATKVGIGPGRVCITKIKT GFGTGGWQLAALNICSKAARKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAAHEESPG ETVELDGKRYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLKDTLVEMQQDLQSSISYAG GKDLKSLTTVDYVIVRNSIFNGDRD >gi|312979643|gb|ACRM01000022.1| GENE 249 239651 - 239920 460 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475335|ref|ZP_04060058.1| ribosomal protein S14p/S29e [Staphylococcus hominis SK119] # 1 89 1 89 89 181 100 2e-44 MAKKSKIAKELKREKLVNQYYELRKELKEKGDYKALKKLPRDSSPTRLTRRCKVTGRPRG VMRKFEMSRIAFREHAHKGQIPGVKKSSW >gi|312979643|gb|ACRM01000022.1| GENE 250 240092 - 240241 270 49 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15924325|ref|NP_371859.1| 50S ribosomal protein L33 [Staphylococcus aureus subsp. aureus Mu50] # 1 49 1 49 49 108 100 2e-22 MRVNVTLACTECGDRNYITTKNKRNNPERIEMKKYCPRLNKYTLHRETK >gi|312979643|gb|ACRM01000022.1| GENE 251 240490 - 241938 1702 482 aa, chain + ## HITS:1 COG:SA1169 KEGG:ns NR:ns ## COG: SA1169 COG0833 # Protein_GI_number: 15926914 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 482 1 482 484 649 74.0 0 MEDNNMKRGLKSRHISMIAIGGAIGTGLFVATGSVVSQAGPGGAILAYLLIGIMLYFLMS SIGELATFYPVSGSFSSYATRFIDPSIGFTMGWLYYILWSLVSSVDVMVASNVLFYWDVF KIFSPLVWSLIFITIIFLLNIFTVKAFGETEFWLSLIKVVTIIVFIVVGILMIFGILGGH TYGFENYTKGEAPFVGGLSGFLAVLLVAGFSVGGTEVVAVTAGESDNPEKTMPRAVKQVF WRILLFYVLSIVVIAAIIPYTDPLLLNKNQSVSQSPFTIVFDRIGIAFAASIINAVILTS LLSAANSGMYTTSRMLFSLSDEKQAPKFLSKLNNKTKLPMRSLVTTYILVVAIIILANFY ANAVFSLLNIIGSLVIIVWAISAWAQIRLRRGIKRQGKDINTLLPYKSPLFPLGPIIVFA TLIFLYFGNSIGDLFSGNIGDFFVNIMPLIVLAIIFIVHKLIRKTKFVKLDHMDLTAHHY HD >gi|312979643|gb|ACRM01000022.1| GENE 252 242075 - 242389 406 104 aa, chain + ## HITS:1 COG:no KEGG:SH1575 NR:ns ## KEGG: SH1575 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 104 1 104 104 171 86.0 5e-42 MVGQTNLFDDVIKSDERFVIVVQSLEERNGQLLKRTLREYPSLTHDQMENLFTHLKDVFQ DEPFRDNQSAYTVTVYTNLEYAADQVYAHVKRNKGKRDWTHTAK >gi|312979643|gb|ACRM01000022.1| GENE 253 242471 - 243274 1120 267 aa, chain - ## HITS:1 COG:SA1167 KEGG:ns NR:ns ## COG: SA1167 COG0561 # Protein_GI_number: 15926912 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 267 1 267 267 375 70.0 1e-104 MSNYKMIVMDMDDTLITSDNVVSPETKDYLIQLQEEGYKIVLASGRPTEGMIPVAKELKL DHYQSYIISYNGGKTINAKTEEIEVSKSVTKDHFDKITDYCREKGFLTLTYQDGQIIFDT EHEYRKIESELTGLPMKQVDDIKAYIQSDVPKAMGVDYEENISKARNELNGTFNSDIDVT TSKPFFLEFMAKDVSKGNAIKALCEKLNISLSEVICFGDSLNDQSMFEVVGYAVAMGNAS EELKKIADKVTLDNDSNGIPAALKELL >gi|312979643|gb|ACRM01000022.1| GENE 254 243325 - 244242 947 305 aa, chain - ## HITS:1 COG:SA1166 KEGG:ns NR:ns ## COG: SA1166 COG0083 # Protein_GI_number: 15926911 # Func_class: E Amino acid transport and metabolism # Function: Homoserine kinase # Organism: Staphylococcus aureus N315 # 1 303 1 303 304 427 69.0 1e-119 MKPSLHLKIPASTANLGVGFDSIGMAINKYLYLYVEEAEGNNWEFRYLNEELDSLSKDKS NYVYKVAQQVAEKYNVTLPNLKVSMRSEIPLARGLGSSASALVGALYIANYFGNIQLSKY ELLQLATDIEGHPDNVAPTIYGGLLAGYYNPETKETNVAHIDIPDVDVILTIPTYELKTE DSRRVLPDKYSHEKAVQNSAISNTMICALIQHNYDLAGKMMTQDGFHEPYRQHLILEFEK VKILSQKYDAYATVISGAGPTILTLSRKEKSGALVRTLKSEITTCDSELATINNVGVIEE VVYPS >gi|312979643|gb|ACRM01000022.1| GENE 255 244244 - 245305 228 353 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 29 328 12 303 308 92 29 2e-17 MKRWQGLVEEFKDYLPVNEDTPKLTLNEGHTPLIHCDNISEMLDIDLYVKYEGANPTGSF KDRGMVMAVTKAKEQGKKVVICASTGNTSASAAAYAARAGLKAIVVIPEGKIALGKLSQA VMYGAEIVSIEGNFDEALEIVKEIAQNDDDIELVNSVNPFRIEGQKTGAFEIVEQLEEAP DVLAIPVGNAGNITAYWKGFKEYHEKKGSQLPQLFGFQAEGASPIVQNKVIKNPETIATA IRIGNPASWKKATVALEESNGLIDSVTDDEILEAYQLMTSKEGVFSEPASNASIAGLIKL QRAGKLSKGKKVVAILTGNGLKDPDTAISVLDNPIQPLPNNKESIINYIKGTL >gi|312979643|gb|ACRM01000022.1| GENE 256 245311 - 246588 1497 425 aa, chain - ## HITS:1 COG:SA1164 KEGG:ns NR:ns ## COG: SA1164 COG0460 # Protein_GI_number: 15926909 # Func_class: E Amino acid transport and metabolism # Function: Homoserine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 425 1 426 426 642 79.0 0 MKELNVALLGLGTVGSGVVKIIEENRQQIKDTLNKDIVIKHILVRDTTKKRPINISQYHL TEDINEILNDEDIDIVIEVMGGIEPTVDWLRESLKRKKHVITANKDLLAVHLELLENLAE QQGVALKFEASVAGGIPIVNAINNGLNANNISKFMGILNGTSNFILSKMTREQTSFEDAL AEAQRLGFAEVDPTDDVEGIDAARKVVITSYLSFNQVIKLNDVKVKGISKTTLSDINVAD KLGYKIKLIGKSTYHHSEVNASVEPTLIHKSHQLAAVENEYNAIYVIGDAVGDTMFYGKG AGSLATGSAVVSDLLNVALFFESNLHTLPPHFELKTNKTRELMDNGDAIAIGEKLNYYVV IHSNESIDKLKDQLKSDLPFHKSLQIEQRDSSSYGVVIIGLDQSPESLLSKANYNIEKIY PVEGV >gi|312979643|gb|ACRM01000022.1| GENE 257 246788 - 248167 1463 459 aa, chain + ## HITS:1 COG:SA1163 KEGG:ns NR:ns ## COG: SA1163 COG0527 # Protein_GI_number: 15926908 # Func_class: E Amino acid transport and metabolism # Function: Aspartokinases # Organism: Staphylococcus aureus N315 # 1 459 1 459 460 708 77.0 0 MKVAKFGGSSVSNATQIKKVLNIVNDDPDRKIIIVSAPGKRHKNDVKTTDLLIRLYEKVI NHLDYQDKKREIIQRYADILEELNMESTLLETIDETLETIIKQLNDKHDRLYDALLSCGE NFNAQLIAKYNDSQGIKTTYLSPKDAGILVTDLPQQAQILEDAYDKIYKLREIEGKIIIP GFFGVSKHNYVVTFPRGGSDITGAIIARGIKASLYENFTDVSGIFKANPNVIEHPELIEE ITYREMRELSYAGFSVFHDEALQPLYKHRIPVVIKNTNHPEDKGTFIRHDREVTDKNQII GISCDKDFTVINIKKYLMNRQIGFTRRILEILEDYHISFDHMPSGIDNISIIMRSNQIKD KENEVLSAIRKKCDIDELSIDHDLAILMIVGEGMTQSVGTANTITHALAESNINLKMINQ GASEISMMFGISRENADKAVLSTYEYCYHGVCLKNLCPK Prediction of potential genes in microbial genomes Time: Sun May 29 09:28:32 2011 Seq name: gi|312979642|gb|ACRM01000023.1| Staphylococcus hominis subsp. hominis C80 cont1.23, whole genome shotgun sequence Length of sequence - 205168 bp Number of predicted genes - 197, with homology - 190 Number of transcription units - 81, operones - 45 average op.length - 3.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) - Term 1 - 34 2.3 1 1 Tu 1 . - CDS 45 - 626 583 ## SH1581 hypothetical protein - Prom 779 - 838 10.2 + Prom 815 - 874 10.1 2 2 Tu 1 . + CDS 944 - 1801 1022 ## SH1582 hypothetical protein + Term 1806 - 1861 19.1 - Term 1795 - 1847 18.3 3 3 Tu 1 . - CDS 1853 - 2398 778 ## COG1525 Micrococcal nuclease (thermonuclease) homologs - Prom 2496 - 2555 8.4 + Prom 2367 - 2426 7.3 4 4 Tu 1 . + CDS 2567 - 2758 355 ## + Term 2791 - 2840 2.4 - Term 2779 - 2828 11.3 5 5 Op 1 19/0.000 - CDS 2864 - 3466 647 ## COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 6 5 Op 2 6/0.000 - CDS 3463 - 4557 966 ## COG4585 Signal transduction histidine kinase 7 5 Op 3 45/0.000 - CDS 4558 - 5292 595 ## COG0842 ABC-type multidrug transport system, permease component 8 5 Op 4 1/0.789 - CDS 5285 - 6163 778 ## COG1131 ABC-type multidrug transport system, ATPase component - Prom 6187 - 6246 3.9 - Term 6253 - 6299 14.7 9 6 Op 1 . - CDS 6307 - 7788 1641 ## COG1502 Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes 10 6 Op 2 . - CDS 7821 - 8015 276 ## SH1591 hypothetical protein - Prom 8072 - 8131 13.0 + Prom 8076 - 8135 10.4 11 7 Tu 1 . + CDS 8240 - 9265 1247 ## COG2008 Threonine aldolase + Term 9282 - 9329 3.2 - Term 10131 - 10168 5.5 12 8 Op 1 5/0.105 - CDS 10205 - 11545 1583 ## COG0174 Glutamine synthetase 13 8 Op 2 . - CDS 11566 - 11931 457 ## COG0789 Predicted transcriptional regulators - Prom 11988 - 12047 7.1 - Term 12031 - 12081 7.2 14 9 Op 1 . - CDS 12158 - 13132 233 ## PROTEIN SUPPORTED gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase 15 9 Op 2 . - CDS 13150 - 13230 85 ## 16 9 Op 3 4/0.158 - CDS 13273 - 14511 1507 ## COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance 17 9 Op 4 . - CDS 14537 - 15775 1452 ## COG2262 GTPases - Prom 15924 - 15983 8.6 + Prom 15766 - 15825 8.3 18 10 Tu 1 . + CDS 15885 - 16361 531 ## COG0386 Glutathione peroxidase + Term 16372 - 16431 5.0 - Term 16331 - 16380 2.6 19 11 Op 1 15/0.000 - CDS 16551 - 16793 385 ## COG1923 Uncharacterized host factor I protein 20 11 Op 2 1/0.789 - CDS 16747 - 17745 917 ## COG0324 tRNA delta(2)-isopentenylpyrophosphate transferase 21 11 Op 3 1/0.789 - CDS 17749 - 18684 924 ## COG2267 Lysophospholipase - Prom 18810 - 18869 10.4 - Term 18828 - 18869 7.3 22 12 Tu 1 5/0.105 - CDS 18893 - 20563 2319 ## COG0578 Glycerol-3-phosphate dehydrogenase - Prom 20620 - 20679 4.9 - Term 20583 - 20643 6.2 23 13 Op 1 18/0.000 - CDS 20713 - 22197 2020 ## COG0554 Glycerol kinase - Prom 22224 - 22283 5.9 24 13 Op 2 3/0.211 - CDS 22308 - 23126 1207 ## COG0580 Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) - Prom 23216 - 23275 13.1 - Term 23325 - 23362 2.2 25 14 Op 1 2/0.316 - CDS 23378 - 23911 684 ## COG1954 Glycerol-3-phosphate responsive antiterminator (mRNA-binding) 26 14 Op 2 6/0.000 - CDS 23927 - 25951 2217 ## COG0323 DNA mismatch repair enzyme (predicted ATPase) 27 14 Op 3 1/0.789 - CDS 25964 - 28585 2778 ## COG0249 Mismatch repair ATPase (MutS family) - Prom 28621 - 28680 7.8 28 15 Op 1 1/0.789 - CDS 28789 - 29277 588 ## COG4732 Predicted membrane protein 29 15 Op 2 3/0.211 - CDS 29298 - 29666 312 ## COG4550 Predicted membrane protein 30 15 Op 3 1/0.789 - CDS 29668 - 31212 486 ## PROTEIN SUPPORTED gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase - Prom 31297 - 31356 6.2 - Term 31317 - 31363 2.1 31 16 Op 1 . - CDS 31396 - 31692 408 ## COG0011 Uncharacterized conserved protein 32 16 Op 2 . - CDS 31756 - 32376 501 ## COG4195 Phage-related replication protein - Prom 32429 - 32488 10.7 - Term 32464 - 32512 6.3 33 17 Op 1 23/0.000 - CDS 32523 - 33389 1142 ## COG1013 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit 34 17 Op 2 1/0.789 - CDS 33390 - 35150 2189 ## COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit - Prom 35187 - 35246 6.3 - Term 35189 - 35226 -0.3 35 18 Tu 1 . - CDS 35260 - 36054 956 ## COG1692 Uncharacterized protein conserved in bacteria + Prom 36079 - 36138 11.1 36 19 Tu 1 . + CDS 36208 - 36423 356 ## SH1626 hypothetical protein + Term 36432 - 36470 7.3 - Term 36410 - 36465 12.1 37 20 Op 1 . - CDS 36498 - 38057 2158 ## COG1418 Predicted HD superfamily hydrolase - Prom 38265 - 38324 8.5 38 20 Op 2 . - CDS 38334 - 39380 1418 ## COG0468 RecA/RadA recombinase - Prom 39411 - 39470 10.5 - Term 39481 - 39514 -1.0 39 21 Tu 1 . - CDS 39557 - 40696 1233 ## COG1058 Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA - Prom 40738 - 40797 8.9 - Term 40754 - 40810 5.0 40 22 Op 1 5/0.105 - CDS 40830 - 41405 282 ## PROTEIN SUPPORTED gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase 41 22 Op 2 . - CDS 41438 - 41830 610 ## COG1426 Uncharacterized protein conserved in bacteria 42 22 Op 3 . - CDS 41851 - 42693 1055 ## SLGD_01613 ACT domain protein - Prom 42743 - 42802 12.1 43 23 Op 1 4/0.158 - CDS 42811 - 43515 755 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 44 23 Op 2 14/0.000 - CDS 43518 - 44804 1386 ## COG0612 Predicted Zn-dependent peptidases 45 23 Op 3 2/0.316 - CDS 44804 - 46069 1236 ## COG0612 Predicted Zn-dependent peptidases 46 23 Op 4 3/0.211 - CDS 46097 - 46813 662 ## COG2188 Transcriptional regulators 47 23 Op 5 2/0.316 - CDS 46816 - 49239 2452 ## COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins - Prom 49260 - 49319 12.3 48 24 Tu 1 . - CDS 49576 - 51291 1947 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily - Prom 51356 - 51415 9.4 - Term 51395 - 51448 7.2 49 25 Op 1 26/0.000 - CDS 51454 - 53550 1728 ## PROTEIN SUPPORTED gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase - Prom 53602 - 53661 10.4 - Term 53624 - 53672 5.4 50 25 Op 2 9/0.000 - CDS 53686 - 53955 451 ## PROTEIN SUPPORTED gi|228475039|ref|ZP_04059767.1| ribosomal protein S15 - Prom 53977 - 54036 2.3 51 25 Op 3 12/0.000 - CDS 54066 - 55037 703 ## PROTEIN SUPPORTED gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 52 25 Op 4 26/0.000 - CDS 55055 - 55972 920 ## COG0130 Pseudouridine synthase - Prom 56061 - 56120 5.0 - Term 56054 - 56106 -0.5 53 25 Op 5 32/0.000 - CDS 56184 - 56534 573 ## COG0858 Ribosome-binding factor A - Prom 56557 - 56616 2.0 - Term 56566 - 56614 -0.9 54 25 Op 6 10/0.000 - CDS 56629 - 58725 2507 ## COG0532 Translation initiation factor 2 (IF-2; GTPase) 55 25 Op 7 8/0.000 - CDS 58730 - 59047 528 ## PROTEIN SUPPORTED gi|228475080|ref|ZP_04059808.1| ribosomal protein L7AE family protein 56 25 Op 8 22/0.000 - CDS 59044 - 59328 106 ## PROTEIN SUPPORTED gi|118579398|ref|YP_900648.1| hypothetical protein Ppro_0962 57 25 Op 9 32/0.000 - CDS 59358 - 60584 803 ## PROTEIN SUPPORTED gi|17988250|ref|NP_540884.1| transcription elongation factor NusA 58 25 Op 10 4/0.158 - CDS 60605 - 61072 552 ## COG0779 Uncharacterized protein conserved in bacteria - Prom 61148 - 61207 9.6 - Term 61086 - 61125 5.1 59 26 Tu 1 . - CDS 61218 - 65534 4806 ## COG2176 DNA polymerase III, alpha subunit (gram-positive type) - Prom 65583 - 65642 10.1 - Term 65639 - 65678 3.0 60 27 Op 1 7/0.000 - CDS 65697 - 67397 2096 ## COG0442 Prolyl-tRNA synthetase 61 27 Op 2 12/0.000 - CDS 67414 - 68700 1629 ## COG0750 Predicted membrane-associated Zn-dependent proteases 1 - Prom 68742 - 68801 9.2 62 27 Op 3 32/0.000 - CDS 68906 - 69688 863 ## COG0575 CDP-diglyceride synthetase 63 27 Op 4 19/0.000 - CDS 69692 - 70462 797 ## COG0020 Undecaprenyl pyrophosphate synthase - Prom 70520 - 70579 5.2 - Term 70560 - 70597 4.2 64 27 Op 5 33/0.000 - CDS 70648 - 71202 771 ## COG0233 Ribosome recycling factor 65 27 Op 6 24/0.000 - CDS 71219 - 71941 897 ## COG0528 Uridylate kinase - Prom 71981 - 72040 4.5 66 27 Op 7 38/0.000 - CDS 72079 - 72957 638 ## PROTEIN SUPPORTED gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts - Prom 73055 - 73114 8.8 - Term 73164 - 73203 5.1 67 28 Op 1 . - CDS 73218 - 74006 1319 ## PROTEIN SUPPORTED gi|228475062|ref|ZP_04059790.1| ribosomal protein S2 68 28 Op 2 . - CDS 74026 - 74157 78 ## 69 28 Op 3 4/0.158 - CDS 74224 - 75000 1017 ## COG4465 Pleiotropic transcriptional repressor 70 28 Op 4 24/0.000 - CDS 75022 - 76422 1346 ## PROTEIN SUPPORTED gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 71 28 Op 5 4/0.158 - CDS 76489 - 77034 904 ## COG5405 ATP-dependent protease HslVU (ClpYQ), peptidase subunit 72 28 Op 6 5/0.105 - CDS 77035 - 77928 822 ## COG4974 Site-specific recombinase XerD - Prom 77948 - 78007 3.2 73 29 Op 1 6/0.000 - CDS 78066 - 79373 1782 ## COG1206 NAD(FAD)-utilizing enzyme possibly involved in translation 74 29 Op 2 13/0.000 - CDS 79397 - 81466 2192 ## COG0550 Topoisomerase IA - Prom 81529 - 81588 6.0 75 29 Op 3 2/0.316 - CDS 81605 - 82477 758 ## COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake - Prom 82568 - 82627 13.5 - Term 82664 - 82705 4.0 76 30 Op 1 39/0.000 - CDS 82735 - 83640 1380 ## COG0074 Succinyl-CoA synthetase, alpha subunit 77 30 Op 2 1/0.789 - CDS 83662 - 84828 1571 ## COG0045 Succinyl-CoA synthetase, beta subunit - Prom 84859 - 84918 7.8 78 31 Op 1 8/0.000 - CDS 84956 - 85723 952 ## COG0164 Ribonuclease HII 79 31 Op 2 . - CDS 85707 - 86591 1063 ## COG1161 Predicted GTPases - Prom 86765 - 86824 8.4 + Prom 86669 - 86728 10.8 80 32 Op 1 . + CDS 86847 - 89453 2108 ## COG4485 Predicted membrane protein 81 32 Op 2 . + CDS 89473 - 92067 1929 ## COG4485 Predicted membrane protein + Term 92100 - 92148 14.4 + Prom 92249 - 92308 9.6 82 33 Tu 1 . + CDS 92340 - 92624 128 ## COG3666 Transposase and inactivated derivatives - Term 92864 - 92925 12.9 83 34 Op 1 33/0.000 - CDS 93009 - 93359 575 ## PROTEIN SUPPORTED gi|228475063|ref|ZP_04059791.1| ribosomal protein L19 - Prom 93402 - 93461 5.4 84 34 Op 2 30/0.000 - CDS 93464 - 94204 912 ## COG0336 tRNA-(guanine-N1)-methyltransferase 85 34 Op 3 12/0.000 - CDS 94201 - 94701 582 ## COG0806 RimM protein, required for 16S rRNA processing - Prom 94728 - 94787 6.1 - Term 94752 - 94811 16.3 86 35 Op 1 23/0.000 - CDS 94833 - 95108 462 ## PROTEIN SUPPORTED gi|228475027|ref|ZP_04059755.1| ribosomal protein S16 - Prom 95152 - 95211 7.7 - Term 95317 - 95357 7.5 87 35 Op 2 8/0.000 - CDS 95370 - 96740 1806 ## COG0541 Signal recognition particle GTPase 88 35 Op 3 7/0.000 - CDS 96761 - 97093 365 ## COG2739 Uncharacterized protein conserved in bacteria 89 35 Op 4 10/0.000 - CDS 97080 - 98309 1039 ## PROTEIN SUPPORTED gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 90 35 Op 5 6/0.000 - CDS 98306 - 101866 3981 ## COG1196 Chromosome segregation ATPases 91 35 Op 6 7/0.000 - CDS 101945 - 102697 812 ## COG0571 dsRNA-specific ribonuclease - Term 102710 - 102748 7.0 92 35 Op 7 22/0.000 - CDS 102758 - 102991 410 ## COG0236 Acyl carrier protein - Prom 103022 - 103081 6.6 - Term 103016 - 103066 -0.8 93 35 Op 8 26/0.000 - CDS 103120 - 103854 1051 ## COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 94 35 Op 9 5/0.105 - CDS 103847 - 104773 1285 ## COG0331 (acyl-carrier-protein) S-malonyltransferase 95 35 Op 10 . - CDS 104766 - 105524 871 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 96 35 Op 11 4/0.158 - CDS 105449 - 105751 178 ## COG0416 Fatty acid/phospholipid biosynthesis enzyme 97 35 Op 12 4/0.158 - CDS 105744 - 106313 589 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism - Prom 106359 - 106418 5.3 98 36 Tu 1 . - CDS 106452 - 108503 2148 ## COG1200 RecG-like helicase - Prom 108544 - 108603 6.2 99 37 Op 1 . - CDS 108895 - 109077 68 ## gi|228475008|ref|ZP_04059736.1| hypothetical protein STAHO0001_1000 100 37 Op 2 9/0.000 - CDS 109079 - 110737 2076 ## COG1461 Predicted kinase related to dihydroxyacetone kinase 101 37 Op 3 . - CDS 110752 - 111126 608 ## COG1302 Uncharacterized protein conserved in bacteria - Prom 111324 - 111383 8.2 + Prom 111187 - 111246 9.1 102 38 Tu 1 . + CDS 111396 - 111584 319 ## PROTEIN SUPPORTED gi|228474967|ref|ZP_04059695.1| ribosomal protein L28 + Term 111599 - 111647 5.1 - Term 111593 - 111627 2.1 103 39 Op 1 6/0.000 - CDS 111636 - 112277 816 ## COG1564 Thiamine pyrophosphokinase 104 39 Op 2 10/0.000 - CDS 112282 - 112926 463 ## COG0036 Pentose-5-phosphate-3-epimerase 105 39 Op 3 7/0.000 - CDS 112926 - 113801 736 ## COG1162 Predicted GTPases - Prom 113829 - 113888 9.0 - Term 113948 - 113992 5.3 106 40 Op 1 17/0.000 - CDS 114099 - 116123 2310 ## COG0515 Serine/threonine protein kinase 107 40 Op 2 5/0.105 - CDS 116120 - 116863 986 ## COG0631 Serine/threonine protein phosphatase 108 40 Op 3 4/0.158 - CDS 116869 - 117963 1310 ## COG0820 Predicted Fe-S-cluster redox enzyme 109 40 Op 4 20/0.000 - CDS 117965 - 119272 1156 ## COG0144 tRNA and rRNA cytosine-C5-methylases 110 40 Op 5 26/0.000 - CDS 119269 - 120207 1170 ## COG0223 Methionyl-tRNA formyltransferase 111 40 Op 6 . - CDS 120194 - 120682 542 ## COG0242 N-formylmethionyl-tRNA deformylase - Prom 120709 - 120768 6.3 + Prom 120758 - 120817 10.6 112 41 Tu 1 . + CDS 120858 - 121061 329 ## COG2314 Predicted membrane protein + Term 121130 - 121172 4.2 - Term 121066 - 121115 5.2 113 42 Op 1 5/0.105 - CDS 121121 - 123529 2773 ## COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase 114 42 Op 2 10/0.000 - CDS 123529 - 124737 1165 ## COG0452 Phosphopantothenoylcysteine synthetase/decarboxylase - Prom 124861 - 124920 6.6 - Term 124918 - 124961 3.0 115 42 Op 3 25/0.000 - CDS 124995 - 125207 372 ## COG1758 DNA-directed RNA polymerase, subunit K/omega 116 42 Op 4 . - CDS 125207 - 125830 807 ## COG0194 Guanylate kinase - Prom 126013 - 126072 6.7 + Prom 125902 - 125961 5.8 117 43 Tu 1 . + CDS 125990 - 127693 1539 ## COG1293 Predicted RNA-binding protein homologous to eukaryotic snRNP + Term 127705 - 127748 7.6 - Term 127685 - 127743 13.0 118 44 Tu 1 . - CDS 127755 - 128159 422 ## COG3865 Uncharacterized protein conserved in bacteria - Prom 128252 - 128311 7.8 + Prom 128237 - 128296 10.4 119 45 Tu 1 . + CDS 128323 - 128403 162 ## + Term 128418 - 128486 3.2 - Term 128416 - 128466 8.3 120 46 Op 1 . - CDS 128479 - 128694 329 ## SH1708 hypothetical protein 121 46 Op 2 9/0.000 - CDS 128718 - 129326 892 ## COG0461 Orotate phosphoribosyltransferase 122 46 Op 3 3/0.211 - CDS 129328 - 130020 925 ## COG0284 Orotidine-5'-phosphate decarboxylase - Prom 130044 - 130103 8.3 - Term 130052 - 130106 -0.7 123 47 Op 1 24/0.000 - CDS 130121 - 133294 4187 ## COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) 124 47 Op 2 7/0.000 - CDS 133287 - 134393 1500 ## COG0505 Carbamoylphosphate synthase small subunit 125 47 Op 3 15/0.000 - CDS 134395 - 135669 1597 ## COG0044 Dihydroorotase and related cyclic amidohydrolases 126 47 Op 4 6/0.000 - CDS 135672 - 136565 1002 ## COG0540 Aspartate carbamoyltransferase, catalytic chain 127 47 Op 5 . - CDS 136591 - 137904 1065 ## PROTEIN SUPPORTED gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 - Prom 137967 - 138026 8.9 + Prom 137954 - 138013 6.3 128 48 Tu 1 . + CDS 138033 - 138128 80 ## - Term 137917 - 137954 4.9 129 49 Tu 1 . - CDS 138129 - 138656 748 ## COG2065 Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase - Prom 138684 - 138743 6.5 - Term 138668 - 138707 8.1 130 50 Op 1 15/0.000 - CDS 138924 - 139841 1248 ## COG0564 Pseudouridylate synthases, 23S RNA-specific 131 50 Op 2 . - CDS 139853 - 140329 591 ## COG0597 Lipoprotein signal peptidase 132 50 Op 3 . - CDS 140414 - 140869 610 ## COG3942 Surface antigen 133 50 Op 4 . - CDS 140895 - 141689 777 ## COG2514 Predicted ring-cleavage extradiol dioxygenase - Prom 141765 - 141824 8.1 - Term 141808 - 141860 8.3 134 51 Tu 1 . - CDS 141881 - 143398 2010 ## COG0702 Predicted nucleoside-diphosphate-sugar epimerases - Prom 143536 - 143595 7.7 - Term 143540 - 143587 8.4 135 52 Op 1 6/0.000 - CDS 143601 - 146351 3555 ## COG0060 Isoleucyl-tRNA synthetase - Prom 146449 - 146508 9.7 136 52 Op 2 6/0.000 - CDS 146571 - 147251 809 ## COG3599 Cell division initiation protein 137 52 Op 3 7/0.000 - CDS 147315 - 148085 1008 ## PROTEIN SUPPORTED gi|49483354|ref|YP_040578.1| hypothetical protein SAR1167 - Term 148103 - 148145 4.8 138 52 Op 4 12/0.000 - CDS 148164 - 148460 387 ## COG0762 Predicted integral membrane protein 139 52 Op 5 14/0.000 - CDS 148483 - 149073 771 ## COG1799 Uncharacterized protein conserved in bacteria 140 52 Op 6 7/0.000 - CDS 149079 - 149753 844 ## COG0325 Predicted enzyme with a TIM-barrel fold 141 52 Op 7 5/0.105 - CDS 149816 - 150646 696 ## COG1496 Uncharacterized conserved protein - Prom 150698 - 150757 11.7 - Term 150734 - 150775 2.5 142 53 Op 1 35/0.000 - CDS 150801 - 151979 1831 ## COG0206 Cell division GTPase 143 53 Op 2 25/0.000 - CDS 152009 - 153442 1668 ## COG0849 Actin-like ATPase involved in cell division - Prom 153481 - 153540 5.0 144 53 Op 3 1/0.789 - CDS 153546 - 154691 1143 ## COG1589 Cell division septal protein 145 53 Op 4 28/0.000 - CDS 154710 - 156056 1761 ## COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase 146 53 Op 5 4/0.158 - CDS 156058 - 157023 1042 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 157119 - 157178 10.6 - Term 157115 - 157174 16.5 147 54 Op 1 7/0.000 - CDS 157198 - 159444 2764 ## COG0768 Cell division protein FtsI/penicillin-binding protein 2 148 54 Op 2 7/0.000 - CDS 159425 - 159826 401 ## COG4839 Protein required for the initiation of cell division 149 54 Op 3 29/0.000 - CDS 159840 - 160775 1176 ## COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis 150 54 Op 4 3/0.211 - CDS 160790 - 161221 436 ## COG2001 Uncharacterized protein conserved in bacteria - Prom 161282 - 161341 4.5 - Term 161307 - 161350 9.6 151 55 Tu 1 . - CDS 161364 - 162977 1510 ## COG4365 Uncharacterized protein conserved in bacteria - Prom 163190 - 163249 8.2 - Term 163305 - 163343 4.9 152 56 Tu 1 . - CDS 163351 - 164040 745 ## COG1011 Predicted hydrolase (HAD superfamily) - Prom 164065 - 164124 11.3 - Term 164109 - 164144 5.3 153 57 Op 1 . - CDS 164166 - 164300 223 ## SERP0738 phenol soluble modulin beta 1 154 57 Op 2 . - CDS 164343 - 164477 241 ## gi|223043774|ref|ZP_03613817.1| conserved domain protein 155 57 Op 3 . - CDS 164512 - 164646 225 ## 156 57 Op 4 . - CDS 164689 - 164823 268 ## gi|223043774|ref|ZP_03613817.1| conserved domain protein 157 57 Op 5 . - CDS 164864 - 164998 296 ## gi|228476262|ref|ZP_04060964.1| conserved hypothetical protein + Prom 165585 - 165644 5.2 158 58 Tu 1 . + CDS 165665 - 166657 1156 ## COG1525 Micrococcal nuclease (thermonuclease) homologs + Prom 166676 - 166735 8.4 159 59 Op 1 . + CDS 166908 - 167459 780 ## SH1807 hypothetical protein 160 59 Op 2 . + CDS 167509 - 168180 1099 ## gi|228476256|ref|ZP_04060958.1| conserved hypothetical protein + Term 168187 - 168215 -0.1 + Prom 168205 - 168264 5.2 161 60 Op 1 12/0.000 + CDS 168356 - 168916 203 ## COG0582 Integrase 162 60 Op 2 . + CDS 168876 - 169259 216 ## COG0582 Integrase - TRNA 169388 - 169464 82.5 # Arg TCT 0 0 - Term 169634 - 169678 1.5 163 61 Op 1 7/0.000 - CDS 169687 - 170208 490 ## COG0622 Predicted phosphoesterase 164 61 Op 2 3/0.211 - CDS 170208 - 170789 363 ## PROTEIN SUPPORTED gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase 165 61 Op 3 1/0.789 - CDS 170820 - 171617 884 ## COG0796 Glutamate racemase - Prom 171697 - 171756 6.9 - Term 171743 - 171778 6.0 166 62 Op 1 36/0.000 - CDS 171793 - 172650 1094 ## COG0479 Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit 167 62 Op 2 8/0.000 - CDS 172650 - 174416 2281 ## COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit - Prom 174436 - 174495 4.0 168 62 Op 3 1/0.789 - CDS 174497 - 175111 711 ## COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome b subunit - Prom 175225 - 175284 9.2 - Term 175356 - 175393 -1.0 169 63 Op 1 4/0.158 - CDS 175531 - 177315 2195 ## COG0322 Nuclease subunit of the excinuclease complex - Prom 177342 - 177401 2.9 - Term 177346 - 177388 6.1 170 63 Op 2 3/0.211 - CDS 177412 - 177726 538 ## COG0526 Thiol-disulfide isomerase and thioredoxins - Prom 177757 - 177816 8.9 171 64 Op 1 4/0.158 - CDS 177907 - 180258 2800 ## COG1193 Mismatch repair ATPase (MutS family) 172 64 Op 2 4/0.158 - CDS 180268 - 182022 1902 ## COG1796 DNA polymerase IV (family X) 173 64 Op 3 4/0.158 - CDS 182053 - 182538 277 ## COG1286 Uncharacterized membrane protein, required for colicin V production 174 64 Op 4 . - CDS 182575 - 182841 326 ## COG3027 Uncharacterized protein conserved in bacteria - Prom 183020 - 183079 9.3 + Prom 182870 - 182929 5.6 175 65 Tu 1 . + CDS 183054 - 183980 870 ## COG1039 Ribonuclease HIII + Term 184083 - 184119 -0.8 + Prom 184186 - 184245 6.5 176 66 Tu 1 . + CDS 184350 - 184532 57 ## - Term 184344 - 184390 8.6 177 67 Op 1 40/0.000 - CDS 184433 - 186835 3334 ## COG0072 Phenylalanyl-tRNA synthetase beta subunit 178 67 Op 2 4/0.158 - CDS 186835 - 187893 1413 ## COG0016 Phenylalanyl-tRNA synthetase alpha subunit - Prom 187913 - 187972 7.6 179 68 Tu 1 . - CDS 188245 - 188985 204 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 - Prom 189026 - 189085 7.4 - Term 189036 - 189078 4.2 180 69 Op 1 20/0.000 - CDS 189101 - 189274 313 ## PROTEIN SUPPORTED gi|27467745|ref|NP_764382.1| 50S ribosomal protein L32 - Prom 189295 - 189354 6.7 181 69 Op 2 . - CDS 189359 - 189913 711 ## COG1399 Predicted metal-binding, possibly nucleic acid-binding protein - Prom 189937 - 189996 7.6 + Prom 189954 - 190013 6.3 182 70 Tu 1 . + CDS 190040 - 191179 1069 ## COG1323 Predicted nucleotidyltransferase + Term 191186 - 191232 7.1 - Term 191173 - 191218 3.1 183 71 Op 1 14/0.000 - CDS 191226 - 191711 446 ## PROTEIN SUPPORTED gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 184 71 Op 2 . - CDS 191704 - 192255 350 ## PROTEIN SUPPORTED gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 - Prom 192282 - 192341 5.2 + Prom 192244 - 192303 6.7 185 72 Tu 1 . + CDS 192326 - 192715 441 ## SH1830 hypothetical protein + Term 192888 - 192953 -0.4 186 73 Tu 1 . - CDS 192733 - 192984 309 ## COG4471 Uncharacterized protein conserved in bacteria - Prom 193093 - 193152 10.7 + Prom 192889 - 192948 6.8 187 74 Tu 1 . + CDS 193174 - 194064 1087 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 194107 - 194164 13.0 - Term 194086 - 194156 9.2 188 75 Op 1 2/0.316 - CDS 194240 - 194674 309 ## PROTEIN SUPPORTED gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 189 75 Op 2 1/0.789 - CDS 194693 - 195754 913 ## COG2340 Uncharacterized protein with SCP/PR1 domains - Prom 195850 - 195909 11.0 - Term 196024 - 196081 8.2 190 76 Op 1 1/0.789 - CDS 196097 - 196567 559 ## COG2322 Predicted membrane protein 191 76 Op 2 . - CDS 196588 - 197499 924 ## COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) - Prom 197661 - 197720 9.3 + Prom 197517 - 197576 12.0 192 77 Tu 1 . + CDS 197738 - 198658 831 ## COG1612 Uncharacterized protein required for cytochrome oxidase assembly + Term 198669 - 198723 12.1 - Term 198714 - 198763 9.5 193 78 Tu 1 . - CDS 198782 - 202231 4477 ## COG1038 Pyruvate carboxylase - Prom 202276 - 202335 10.4 - Term 202474 - 202525 11.8 194 79 Tu 1 . - CDS 202567 - 203799 1138 ## COG0772 Bacterial cell division membrane protein - Prom 203876 - 203935 13.1 - Term 203925 - 203969 6.1 195 80 Tu 1 . - CDS 204045 - 204320 390 ## COG4838 Uncharacterized protein conserved in bacteria - Prom 204352 - 204411 6.7 + Prom 204374 - 204433 4.9 196 81 Op 1 . + CDS 204459 - 204944 585 ## SH1841 hypothetical protein 197 81 Op 2 . + CDS 204946 - 205140 231 ## COG4896 Uncharacterized protein conserved in bacteria Predicted protein(s) >gi|312979642|gb|ACRM01000023.1| GENE 1 45 - 626 583 193 aa, chain - ## HITS:1 COG:no KEGG:SH1581 NR:ns ## KEGG: SH1581 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 4 189 3 188 193 241 68.0 1e-62 MSHHQNHVEELVGILKNQCRTAFKFHGEVAIQLFLNELFELPSKVDICVERKRIVEVLKV IPSSYTFKYYDMSNHNMDKNNLDIPSISQINVVNNDKVILSIFIYDVINEEWIFRLNTNI RLPKNSIYFHSLTWDVDYIKPEIVLMYDLLDYQQNNLEANYKSVLDALSYYQFVILKMVV GEHKIEKALTLKV >gi|312979642|gb|ACRM01000023.1| GENE 2 944 - 1801 1022 285 aa, chain + ## HITS:1 COG:no KEGG:SH1582 NR:ns ## KEGG: SH1582 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 17 285 17 285 285 389 78.0 1e-107 MTHTIILIIIIVILILAFILNQRYMQDRIDTEVYAKNQMVSKNSLLSKENLELKNKILSS NNEISPHSKRNAKRELQDILDRFKASGKLKYYNIITTSNLATKHPLFEYARTFDYIVVSD VGLINIDVKSWKQKTFYHFDLPTSDHLEGNDQSVEQIVGHYISKQYHSQFDSNRNEIYTF VEKIQNNRVIYEFYQHDPYEQAAINAKILKDGIEKYFNHKVQSIGVIYFSDGSVNIIEGA DEREKYIDTVSTKSSLESVINNAIELSKHPLSETQVNTIVENFHN >gi|312979642|gb|ACRM01000023.1| GENE 3 1853 - 2398 778 181 aa, chain - ## HITS:1 COG:SA1160 KEGG:ns NR:ns ## COG: SA1160 COG1525 # Protein_GI_number: 15926905 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Staphylococcus aureus N315 # 1 181 1 176 177 214 68.0 5e-56 MNSKKNLTIIVFAVIVIGVLAFQFLNHTGPFKDDSQHSSSNSTQTEFKGKEKVHVDRVVD GDTFVAKKSNGEQIKVRLIGVDTPETVKPNTPVQPYGKEASNYSKQHLNNKDVYLEYDKE KEDRYGRTLAYVWLDEKTMYNEELVKKGLAREKYFSPNGKYRSTFEKDEQQAKKDKVNLW S >gi|312979642|gb|ACRM01000023.1| GENE 4 2567 - 2758 355 63 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSERNENLVTMIAVVIAIIVGVILQIVYKLPIIVSVVIAVLLGILVGFIVYIIQSIIRKR KDK >gi|312979642|gb|ACRM01000023.1| GENE 5 2864 - 3466 647 200 aa, chain - ## HITS:1 COG:SA1159 KEGG:ns NR:ns ## COG: SA1159 COG2197 # Protein_GI_number: 15926903 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 200 1 200 200 267 69.0 1e-71 MISIIIAEDQYMLRKAMVQLIEFNDQMNVIEDCGNGVDAFDFIEKYHPDIAILDIEMPGL TGLEVLVKIKEFKLDTKVIIVTTFKRPGYFEKAVANDVDAYVLKERSVEDLIQTIQNVMK GEKEYSTSLMTTLFKESNPLTHKEQVVLREIGNNLSSKEIAEKLYLSDGTVRNYTSNIID KLNADNRFNAWKQAKEKGWI >gi|312979642|gb|ACRM01000023.1| GENE 6 3463 - 4557 966 364 aa, chain - ## HITS:1 COG:SA1158 KEGG:ns NR:ns ## COG: SA1158 COG4585 # Protein_GI_number: 15926902 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 10 358 9 357 363 311 53.0 1e-84 MEKRKWSIRLGELSTLLYLLFPIISIFNEKRGSQTVYLIVLAIFIVSYLMLVIYYYRFNN NVIYSLLVVHYVGIIYFVYTINPMNSLFFFFSAFALPFMFEVTIKSKEFITFIIAMLLCL TITSFYQIEYVSVLIIFYLVILIITLGNFKTKKDRALKKEIEEKNKYINTLIAEQERQRI GQDLHDTLGHVFVSLSLKSELAYKLIDKNQEKAKNEILAINQISKATLIKVRNIIENLKS QSFEEEIQSIKTVLKDANIQFELKNIRKVNVLNPTKQSILSMILREAINNVIKHANASKI CCEVRQEKNELYLIIQDNGKGLNDTEDIKLESIENRVQFLNGKLEIKDKSGMHIRIIIPR EDIK >gi|312979642|gb|ACRM01000023.1| GENE 7 4558 - 5292 595 244 aa, chain - ## HITS:1 COG:SA1157 KEGG:ns NR:ns ## COG: SA1157 COG0842 # Protein_GI_number: 15926901 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, permease component # Organism: Staphylococcus aureus N315 # 4 241 3 240 243 217 48.0 1e-56 MNNIALLKTEFKIIFRKKLTTFLSIILPVGFYLLFTSLLDLPEEEKQQFYKEYMYSMTVF SLMSFCLMQFPIEIIEERNTGWFKRLMVTPLSSKTYFTTKIIKTIMLFLLAIILIFTVAH LYKHVNMSIQQWLLSGVSLWVGASLFLTLGLVIAQFNETQKANSIANIINMLLAILGGLW FPVQTFPIWLQKISKITPTYHLKNLALELVKNQGLNITSLFTLIVYSIMFLIIAMWINQR KEVN >gi|312979642|gb|ACRM01000023.1| GENE 8 5285 - 6163 778 292 aa, chain - ## HITS:1 COG:SA1156 KEGG:ns NR:ns ## COG: SA1156 COG1131 # Protein_GI_number: 15926900 # Func_class: V Defense mechanisms # Function: ABC-type multidrug transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 278 1 278 299 238 48.0 1e-62 MIQIRHLSKRYNGKTVLKNISLNIEKGMSTALIGKNGAGKSTLINILINHLKADTGEIID IDHVLNLNHIGVLFQKTSFPRLIKVKELYKLFCQLYKDAISIDEFKKITKLNDSQLNLYA NHLSGGQQRILDFGLCLIGKPKLLILDEPTAAMDVEMREHFWTMIGKLKKENVSIFYTSH YIEEVERMADKVIFLDQGIIKLNDSPRNILTNQQYSIIKVPNTVDNNLQNLTNYFDVKIE DTTLKIKTSDVKKVIYYLEKLNLNLNDITIEKQTLLETILFADVKEGETKNE >gi|312979642|gb|ACRM01000023.1| GENE 9 6307 - 7788 1641 493 aa, chain - ## HITS:1 COG:SA1155 KEGG:ns NR:ns ## COG: SA1155 COG1502 # Protein_GI_number: 15926899 # Func_class: I Lipid transport and metabolism # Function: Phosphatidylserine/phosphatidylglycerophosphate/cardioli pin synthases and related enzymes # Organism: Staphylococcus aureus N315 # 5 493 17 505 505 729 70.0 0 MISLFGPKIGTILNIILVLGFLVNLVLAFILIFLERNRRSASSTWAWIFVLFVLPVLGFI LYLFFGRTVSKRKMEKNNGKELDVYKDLIDEQAHKIDHHNYHTENKQLQNHQDMARMLLK KQDAFITEDNTIDLFIDGHELYDKVIEDIYNAKGYIHLEYFGFEIDGLGKRIIDALETKL KEGLEVKLLYDDVGSKKLKRHKFKRFESLGGEVEAFFASKLPIINFRMNNRNHRKIIVID GQIGYIGGFNVGDDYLGLGKLGYWRDTHLRVQGDVVNALQIRFILDWNSQAHRPQFEYDN KYFPKKKVHNGHSAIQIGSSGPAYELHQIEFGYTKMIMSAKKSIYIQTPYFIPDRAYMNA LKMAANTGVDVNIMIPCKPDHPFVYWSTFSNVAELLEYGVKVYTYQNGFIHSKMLMIDDE VSSVGSSNMDYRSFVLNFEVNAFVYDEQLAKKLKEAYKEDIKKSKQLTLEKYKKRPLSIK LKEDIAKLLSPIL >gi|312979642|gb|ACRM01000023.1| GENE 10 7821 - 8015 276 64 aa, chain - ## HITS:1 COG:no KEGG:SH1591 NR:ns ## KEGG: SH1591 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 64 1 64 64 67 68.0 1e-10 MSKVKFKRIQAQTIEELENEINQYLASEEGSRYELLNVSIDKIEERQFPNNEEILSAFLI LADK >gi|312979642|gb|ACRM01000023.1| GENE 11 8240 - 9265 1247 341 aa, chain + ## HITS:1 COG:SA1154 KEGG:ns NR:ns ## COG: SA1154 COG2008 # Protein_GI_number: 15926897 # Func_class: E Amino acid transport and metabolism # Function: Threonine aldolase # Organism: Staphylococcus aureus N315 # 1 341 1 341 341 568 77.0 1e-162 MISFENDYLEGAHPKILQRFIDTNYIQASGYGDDQFSKQAADQIRKTIQCPEATVRFLVG GTQTNQVVINTVLKPYEGVISADTGHVAVHEGGAIEFSGHKVLAVPSYEGKISPKEVNTY LETFYSDFKREHMVFPGMVYISHPTEYGTLYSKEELKNLSDVCKEHHIPLFMDGARLGYG LMSNETDVTIEDIANYCDIFYIGGTKIGALCGEAIVFTNNNEPTHFTTRIKQHGALLAKG RLVCIQFLELFTDNLYFEISRHAINMANKMKQGFIDKGYKVYFDSPTNQQFFVLSDDKIK DLQSKVKFAIWEKYDDTHRVVRFATSWATTEENIDKLLELI >gi|312979642|gb|ACRM01000023.1| GENE 12 10205 - 11545 1583 446 aa, chain - ## HITS:1 COG:SA1150 KEGG:ns NR:ns ## COG: SA1150 COG0174 # Protein_GI_number: 15926892 # Func_class: E Amino acid transport and metabolism # Function: Glutamine synthetase # Organism: Staphylococcus aureus N315 # 1 446 1 446 446 883 93.0 0 MSKRTFTKEDIRKFAKEENVRYLRLQFTDILGTIKNVEVPVSQLEKVLDNEMMFDGSSIE GFVRIEESDMYLYPDLDTWVIFPWTAGQGKVARLICDVYTTDGEPFAGDPRTNLKRILKE MEDLGYTDFNLGPEPEFFLFKLDEKGEPTLELNDNGGYFDLAPTDLGENCRRDIVLELED MGFDIEASHHEVAPGQHEIDFKYADAISACDNIQTFKLVVKTIARKHNLHATFMPKPLFG VNGSGMHFNVSLFKGKENAFFDPNGKDQLTEDAYHFTAGILNNARGFTAVCNPLVNSYKR LVPGYEAPCYIAWSGKNRSPLVRVPTSRGLSTRIEVRSVDPAANPYMALAAILQAGLDGI KNKTKVPEPVNQNIYEMNREEREAVGIQDLPSTLYTALKAMRENDTVKKALGNHIYNQFI NSKSIEWDYYRTQVSEWERDQYMKQY >gi|312979642|gb|ACRM01000023.1| GENE 13 11566 - 11931 457 121 aa, chain - ## HITS:1 COG:SA1149 KEGG:ns NR:ns ## COG: SA1149 COG0789 # Protein_GI_number: 15926891 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 120 2 121 122 182 84.0 1e-46 MSNDTIRRNMAVFSMSVVCKLTELTARQIRYYETHELIKPERTEGNKRLFSMNDLERLLE IKALIEKGFNLKGIKQIITNNQGHLTTDEQETRKRMIVDATQKPRSEALPINRGDLSRFI N >gi|312979642|gb|ACRM01000023.1| GENE 14 12158 - 13132 233 324 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|145632364|ref|ZP_01788099.1| ribosomal protein L11 methyltransferase [Haemophilus influenzae 3655] # 15 323 40 350 353 94 26 4e-18 MKENFWNELPRPFFILAPMEDVTDIVFRHVVSEAARPDVFFTEFTNTESFCHPEGIHSVR GRLTFSEDEQPMVAHIWGDKPEQFKEMSFGLADMGFKGIDLNMGCPVANVAKKGKGSGLI LRPERAAEIIQAAKAGGLPVSVKTRLGYYNIEEWKEWLRHVFKQDIANLSIHLRTRKEMS KVDAHWELIEAIKEMRDEVAPQTLLTINGDIPDRQKGMELATKYGIDGVMIGRGIFHNPF AFEKDPREHTSKELLDLFRLHLELFEKYSNEETQQFKSLRRFFKIYVRGIRGASELRHQL MSTETVDEARALLDDFEANMEDKH >gi|312979642|gb|ACRM01000023.1| GENE 15 13150 - 13230 85 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRVNFFLYMDLFYDNISWLIMRDTNE >gi|312979642|gb|ACRM01000023.1| GENE 16 13273 - 14511 1507 412 aa, chain - ## HITS:1 COG:SA1148 KEGG:ns NR:ns ## COG: SA1148 COG4100 # Protein_GI_number: 15926890 # Func_class: P Inorganic ion transport and metabolism # Function: Cystathionine beta-lyase family protein involved in aluminum resistance # Organism: Staphylococcus aureus N315 # 1 412 1 412 412 712 85.0 0 MSDIQHIVSEVEETLTPFFKEIEETAYINQEKVLDAFHHVKASENDLVGSTGYGYDDFGR DHLEEIYAYTFKAEDAIVRSQIISGTHAITLALQSTLKYGDELMYITGSPYDTLLEVIGV NGNGIESLKEHGVTYKEVALKNGMIDIEMVLNTISKQTKVVAIQRSKGYGQRPSITVDEI ENVISQIKQRYPNVIVFVDNCYGEFVERREPIEVGADLIAGSLIKNPGGGLAKIGGYIAG RKDLIERCGYRLTAPGIGKEAGASLSSLQEMYQGFFLAPHVVSQSLKGALFTSLLLEKMN MNTVPKYDAKRTDLIQTVQFDTKEQMIAFCQSIQHASPINAHFSPEPSYMPGYEDDVIMA AGTFVQGSSIELSADGPIRPPYEAYVQGGLTYEHVKIAVTRAVMNLKEQNLI >gi|312979642|gb|ACRM01000023.1| GENE 17 14537 - 15775 1452 412 aa, chain - ## HITS:1 COG:SA1147 KEGG:ns NR:ns ## COG: SA1147 COG2262 # Protein_GI_number: 15926889 # Func_class: R General function prediction only # Function: GTPases # Organism: Staphylococcus aureus N315 # 1 412 1 412 412 581 77.0 1e-165 MAQQHTYDTKKKLETAVLVGVHAQSDHQYNFESTMEELEALALTCQLDVIGQVTQNKDQF DYKYYVGKGKIDEIKAFIEFHDIDVVVTNDELTTAQSKTLNDNLGIKIIDRTQLILEIFA LRARSREGKLQVELAQLDYLLPRLQGHGKSLSRLGGGIGTRGPGETKLEMDRRHIRTRMN EIKHQLKTVVEHRERYRNQREQNQVFQIALIGYTNAGKSSWFNVLANETTFEKDLLFATL DPKTRQIQINNGFNLIISDTVGFIQKLPTTLVAAFKSTLEEAKSANLLLHVVDASHSEYR AQYDTVNQLVKDLDMDDLPQAIIFNKKDQCSEETDVPVSDHPSVFVSSRNSEDKLKVKQL LFDQIKATLSYYVETVSSEDADRLYFLKQHTLIEEMKFDENNESYIVKGYRK >gi|312979642|gb|ACRM01000023.1| GENE 18 15885 - 16361 531 158 aa, chain + ## HITS:1 COG:SA1146 KEGG:ns NR:ns ## COG: SA1146 COG0386 # Protein_GI_number: 15926888 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutathione peroxidase # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 256 77.0 1e-68 MENIYDFEVQKSNGENYKLDVYKGDVMLIVNTASECGFTPQFEGLQELYNKYKDQGFIVL GFPCNQFGGQEPGSGAEANQNCKINYGVTFPIHEKVDVKGDNQHPLFRYLTSQAKGMLSE KIKWNFTKFLVDREGNIVQRFSPQKKPAQIEKDIEKLL >gi|312979642|gb|ACRM01000023.1| GENE 19 16551 - 16793 385 80 aa, chain - ## HITS:1 COG:SA1145 KEGG:ns NR:ns ## COG: SA1145 COG1923 # Protein_GI_number: 15926887 # Func_class: R General function prediction only # Function: Uncharacterized host factor I protein # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 100 76.0 6e-22 MIANQNIQDQALENFKAEQTEITVFFLNGFQMKGVIEDFDKYMISLVSQGKQHLIYKHAI STFTVDTESTDSEATGEGEE >gi|312979642|gb|ACRM01000023.1| GENE 20 16747 - 17745 917 332 aa, chain - ## HITS:1 COG:SA1144 KEGG:ns NR:ns ## COG: SA1144 COG0324 # Protein_GI_number: 15926886 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA delta(2)-isopentenylpyrophosphate transferase # Organism: Staphylococcus aureus N315 # 6 311 5 310 311 460 77.0 1e-129 MQASKKPFLVVIVGPTASGKTELSIELAKKMNGEIISGDSMQVYRQMNIGTAKVTETEME GIPHYLIDILNPDESFSAYEFKKRAEVLIEDITKRGKVPIIAGGTGLYIQSLIYDYPFDD ENISVEKELRVKEKIDVLNQLNNDDLHRYLASFDETSAKDIHPNNRKRVLRAIEYYLKTK KLLSSRKKVQQFTENYDTLLVGIEMSRKTLYTRINKRVDIMLGHGLFNEVKALVEQGFES SQSMQAIGYKELVPVIKGEMELEPAIELLKQHSRQYAKRQLTWFKNKMNVQWFDRETMSL QMMLDEITTQINKRSSKHDCKPKHPRSSTREL >gi|312979642|gb|ACRM01000023.1| GENE 21 17749 - 18684 924 311 aa, chain - ## HITS:1 COG:SA1143 KEGG:ns NR:ns ## COG: SA1143 COG2267 # Protein_GI_number: 15926885 # Func_class: I Lipid transport and metabolism # Function: Lysophospholipase # Organism: Staphylococcus aureus N315 # 1 301 1 300 304 341 53.0 1e-93 MGQSAYKITVEDGTTLEVKVDKANIATYGIVHIFHGMAEHMDRYETLVKALTHQGYDVIR HNHRGHGKEIDEKERGHYDSMNQVVQDAFEIAQTLYDSEKGLPYIVLGHSMGSIIARLFV ETYPNFANGLILTGTGQYPKWKGIPAGISLKLISIFTGKRKRLKWVNQLVYKSFNKKIDQ PRTESDWLSSQSTEVDKFVNDEYTGFLVSNQLIYETVKHMTRTANYSQLKKINKQLPILM ISGKNDPFGEYGRGIKSMARKFKKAGIKHITVQLYANRRHEILFEVDQQMIWNHMFDWIQ KQVLKNNQSEA >gi|312979642|gb|ACRM01000023.1| GENE 22 18893 - 20563 2319 556 aa, chain - ## HITS:1 COG:SA1142 KEGG:ns NR:ns ## COG: SA1142 COG0578 # Protein_GI_number: 15926884 # Func_class: C Energy production and conversion # Function: Glycerol-3-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 556 17 572 573 816 76.0 0 MALSTFNRNLIKKNLRNKEFDVVVIGGGITGAGIALDATQRGMKVALVEMQDFAQGTSSR STKLVHGGLRYLKQAQIKVVAETGKERAIVYENGPHVTTPEWMLLPMHKGGTFGKFTTNI GLTMYDRLAGVKRHERKKMLSKQTTLNKEPLVKKDGLKGGGYYVEYRTDDARLTIEVMKR AAEKGAEVINHTKSTDFVYDAKNKVSGIKVKDMLTGEEYQINAKKVINAAGPWVDEVRKK DYTRNNKQLRLTKGVHVVIDQSKFPLRQAVYFDTEKDGRMIFAIPREGKAYVGTTDTFYN NEKTKPLTNQEDRDYLIDAINYMFPDVHVTDADIESTWAGVRPLILEDGKDPSEISRKDE IWEGKSGLLTIAGGKLTGYRHMALEIVDLLAKRLKQEYGLKFADSKTKNTPISGGDVGGS KNFENYVNRKVQEGKALGLSTDVAHNLASKYGSNVDKLFAIAQLTNEKDLNMPLELYVQL VYSVQNEMVYKPTDFLIRRTGKLYFDINTVKQYKQAIIDELDKLLNYTAEQKNEFSKEVD EAIEEATHGNHQPAEK >gi|312979642|gb|ACRM01000023.1| GENE 23 20713 - 22197 2020 494 aa, chain - ## HITS:1 COG:SA1141 KEGG:ns NR:ns ## COG: SA1141 COG0554 # Protein_GI_number: 15926883 # Func_class: C Energy production and conversion # Function: Glycerol kinase # Organism: Staphylococcus aureus N315 # 1 493 6 498 498 859 84.0 0 MSIDQGTTSSRAILFDKEGQIQGVAQREFKQYFPKSGWVEHDANEIWTSVLAVMAEVINE NEIDPEQIKGIGITNQRETTVIWDKKTGRPIYHAIVWQSRQTQHICNELKEQGHEKTFRN KTGLLLDPYFSGTKVRWILDNVKGAREKAENGDLLFGTIDTWLVWKLSGGEAHITDYSNA SRTLMYNIHELKWDDELLELLDIPKAILPEVKESSEVYAHTKDYHFFGQEVPIAGIAGDQ QAALFGQACFERGDVKNTYGTGGFMLMNTGEEPVTSESGLLTTIAYGLDGKVNYALEGSI FVSGSAIQWLRDGLRIINSAPQTENYATRVNSTDNVYFVPAFVGLGTPYWDSEARGAIFG LTRGTEKEHFIRATLESLCYQTRDVMEAMSKDSGIEVNNLRVDGGAVKNNFIMQFQADIV DTSVERPEVQETTALGAAYLAGLAVDFWEDKKDIADGWKLEKEFNPEMSEETRTKLYKGW KKAVEATQVFKLED >gi|312979642|gb|ACRM01000023.1| GENE 24 22308 - 23126 1207 272 aa, chain - ## HITS:1 COG:SA1140 KEGG:ns NR:ns ## COG: SA1140 COG0580 # Protein_GI_number: 15926882 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) # Organism: Staphylococcus aureus N315 # 1 272 1 272 272 389 82.0 1e-108 MNAYLAEFLGTAILILFGGGVCANVNLKRSAGQESDWIVIAAGWGLAVTMGVYAVGQFSG AHLNPAVSIGLAVEGSFSWVKVPGYIVCQMLGGIVGATLVWLMYLPHWKATTEQGAKLGV FSTAPAIKNYFANFLSEIIGTAILSLGILFIGVNKIADGLNPLIVGSLIIAIGLSLGGPT GYAINPARDLGPRIAHAILPIAGKGGSNWWYAIVPVLGPIAGGMLGAVIYQVFYKNEFTF MSGVSIVVLIVTLLIGLALNKSNKHKDIESIY >gi|312979642|gb|ACRM01000023.1| GENE 25 23378 - 23911 684 177 aa, chain - ## HITS:1 COG:SA1139 KEGG:ns NR:ns ## COG: SA1139 COG1954 # Protein_GI_number: 15926880 # Func_class: K Transcription # Function: Glycerol-3-phosphate responsive antiterminator (mRNA-binding) # Organism: Staphylococcus aureus N315 # 1 177 1 177 177 237 68.0 9e-63 MKEHVLPAIRNMKDLEKLTQTDYKVCVLLDMHVGHLRSIIELLKKHDIEAYIHIDLIKGM AHDEYACEYIIQTYKPKGIVSTKTKVIQKAKSLNVLTIFRVFIIDSQALNRSIQLIKKVD PDYVEVLPGIAHKIVENVREATTAKIIAGGLIEEEKEVNDAINSGASYVTTSNRKLW >gi|312979642|gb|ACRM01000023.1| GENE 26 23927 - 25951 2217 674 aa, chain - ## HITS:1 COG:SA1138 KEGG:ns NR:ns ## COG: SA1138 COG0323 # Protein_GI_number: 15926879 # Func_class: L Replication, recombination and repair # Function: DNA mismatch repair enzyme (predicted ATPase) # Organism: Staphylococcus aureus N315 # 1 674 1 669 669 954 75.0 0 MGKIKELQTSLANKIAAGEVVERSSSVVKELLENAIDAKATEINIEVEQSGISSIRVVDN GTGIEQDDLQLVFHRHATSKINDDDDLFHIRTLGFRGEALASISSVAKVTLKTCTDNENG HEIYAENGEILSQKPAKAKKGTDIKVESLFYNTPARLKYIKSLYTELGKITDIVNRMAMS HPNIRFSLISDGKTMLKTNGSGRTNEVMAEIYGIKVAKDLVHISGDTSDYHLEGFVAKPE HSRSNKHYISIFINGRYIKNFALNKAITEGYHTLLTIGRYPICYINIEMDPILVDVNVHP TKLEVRLSKEEQLYNLIIEKIRHAFKDRILIPKNDLDRTPKKNKVLHTFEQQKIDFEQKQ QNISNKIKQLENKNDPNVSTNNTFSTISSQYDEEHTSDDSYTREDNEHSSVYNNKRSMDK DYFDIQKDILNSLDRAESSIDNTRHDETNIYNYDENEDFQENVTNQKEQDIKGKVSSTPS RRVPYMEVVGQVHGTYIIAQNENGMFMIDQHAAQERIKYEYFREKIGEVSNEVQDLLIPL TFHFSKDEQLIIDQYREELDKVGVHLEHFGGYDYIVNSYPVWFPKVEAEEIIKDMIELVL NHKKIDVKKMREDAAIMMSCKKSIKANHYLKKNEMADLIDQLREAEDPFTCPHGRPIIIN FSNYELEKLFKRVM >gi|312979642|gb|ACRM01000023.1| GENE 27 25964 - 28585 2778 873 aa, chain - ## HITS:1 COG:SA1137 KEGG:ns NR:ns ## COG: SA1137 COG0249 # Protein_GI_number: 15926878 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Staphylococcus aureus N315 # 1 873 1 872 872 1343 81.0 0 MANVTPMMQQYLKIKSQYQDCLLFFRLGDFYEMFFEDAKEASRVLEITLTKRDAKKENPI PMCGVPYHSANSYIETLINNGYKVAICEQMEDPKQTKGMVKREVVKVVTPGTMMEQGGMD ENQNNYILSFIQNENGYALSYCDVSTGELKATNFEDESTLINEIITINPNEIVVREDINE DLKKQISLTTETITVREEISDIEYSVNTLENNLMFLTTQLLLDYIHHTQKRDLSHIEDVI TYAAIDFMKMDYYAKRNLELTESIRLKSKKGTLLWLMDETKTPMGARRLKQWIDRPLIHK DNIEQRLDIVESFIDHFIERDTLRGYLNQVYDIERLVGRVSYGNVNARDLIQLKHSISEI PNIKSLLEQMDNVTTTQFSTLEPLEDLLKVLEDSLVEEPPISVKDGGLFKQGFSKQLDEY LEASKNGKDWLAQLQAKERERTGIKSLKISYNKVFGYFIEITRANLQGFEPSEHDYHRKQ TLSNAERFITDELKEKEDIILGAEDKAIELEYQLFIRLREHVKSYTERLQRQAKVISELD CLQSFAEIAQKYNYVRPEFSDDKTLNLENSRHPVVERVMDYNDYVPNDCYLDQNNFIYLI TGPNMSGKSTYMRQVAIISIMAQMGAYVPCDNAILPIFDQIFTRIGAADDLVSGKSTFMV EMLEAQKALTYATADSLIIFDEIGRGTSTYDGLSLAQAMIEYVAETSHAKTLFSTHYHEL TTLDQQLSSLKNVHVAADEYQGELIFLHKVKEGAVDDSYGIQVAKLANLPEKVIERAQVI LNAFEQNGLSDENVNRKQYNDNSKDIENKDHLINKEEHSTIKQTDVFEQTSFDLFNSNET QSEIEAQIKNLNISNMTPIEALLKLSELQNQLR >gi|312979642|gb|ACRM01000023.1| GENE 28 28789 - 29277 588 162 aa, chain - ## HITS:1 COG:SA1136 KEGG:ns NR:ns ## COG: SA1136 COG4732 # Protein_GI_number: 15926877 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 161 1 161 163 205 78.0 3e-53 MKTKKLTITALLIAFNVVFSSFIIIPLGPVKAAPVQHFVNVLCAVFVGPWYGLAQALISS LIRITFGTGSAFAFPGSMIGVFLASLFYMYRKHIFMAAVGEVIGTGIIGSLMCIPLSWIL GLQHFFIKPLMLVFVVSSFLGAAISYILLIVLKKRGLLDKFK >gi|312979642|gb|ACRM01000023.1| GENE 29 29298 - 29666 312 122 aa, chain - ## HITS:1 COG:SA1135 KEGG:ns NR:ns ## COG: SA1135 COG4550 # Protein_GI_number: 15926876 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 121 1 121 121 92 57.0 2e-19 MYEKEDILKQANSVSNKIKALELIKQYQNVEQQIHENTSIEQKMKQLKLQQKQSVNFQNY GKHQAYQKSEEEISQLEKEINALPIVEEFRSAQFEANELLQLMVSTMEQSLNNHNEKAHH DS >gi|312979642|gb|ACRM01000023.1| GENE 30 29668 - 31212 486 514 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227372256|ref|ZP_03855738.1| SSU ribosomal protein S12P methylthiotransferase [Veillonella parvula DSM 2008] # 64 464 1 399 449 191 29 2e-47 MNEEQRKAGTIDILDERNKKAEKDYSKYFEHVYQPPNLKEAKKRGKQDVQYNRDFHIEDK YKGMGKGRTFLIKTYGCQMNAHDTEVMAGILQALDYQATDDINEADVILINTCAIRENAE NKVFSEIGNLKHLKKNRPETLIGVCGCMSQEESVVNKILKSYQNVDMIFGTHNIHKLPEI LEEAYLSKAMVVEVWSKEGDVIENLPKVREGSTKAWVNIMYGCDKFCTYCIVPFTRGKER SRRPQDIIEEVRELAREGYKEITLLGQNVNSYGKDIKDLDYGLGDLLEDISNIDIPRVRF TTSHPWDFTDRMIEVIAKGGNIVPHIHLPVQSGNNAVLKIMGRKYSRESYLDLVDRIKEA IPNVALTTDIIVGYPNETEEQFEETLSLYDEVQFEHAYTYLYSQRDGTPAAKMKDNVPTE VKKDRLQRLNKKVGQYSEKAMQNYEGQVVTVLCEGTSKKDETVLAGYTEKNKLVNFKGPR EAIGQLVDVKVKEAKQYSLNGEFLHFHNQVMVTN >gi|312979642|gb|ACRM01000023.1| GENE 31 31396 - 31692 408 98 aa, chain - ## HITS:1 COG:SA1133 KEGG:ns NR:ns ## COG: SA1133 COG0011 # Protein_GI_number: 15926874 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 97 1 97 97 164 86.0 3e-41 MQDTLMSVQIVPKTPNNDDVIPYVDEAIKMIDQSGLHYRVGPLETTVQGDMSECLILIQK LNERMVELECPSIISQVKFYHVPEGISIETLTGKYDEA >gi|312979642|gb|ACRM01000023.1| GENE 32 31756 - 32376 501 206 aa, chain - ## HITS:1 COG:BS_yoqZ KEGG:ns NR:ns ## COG: BS_yoqZ COG4195 # Protein_GI_number: 16079105 # Func_class: R General function prediction only # Function: Phage-related replication protein # Organism: Bacillus subtilis # 2 188 67 253 274 106 35.0 3e-23 MDKFKSMQELEKETIENEDWKIITKNRNSSVSILAIHGGGIEPATTELASIIADEGGYNY FTFEGLRSKGNKELHVTSTRYDNKDAMNLVTESNQAIAIHGCEGNESIAYVGGKDERLKS LIKEQLNNIGIKASEAPSHISGQQDNNIVNCTTRGMGVQIELTTSLRKTFFKNNKTNRNS RENQSNWDKLMCDFAKAIKSAIENIE >gi|312979642|gb|ACRM01000023.1| GENE 33 32523 - 33389 1142 288 aa, chain - ## HITS:1 COG:SA1132 KEGG:ns NR:ns ## COG: SA1132 COG1013 # Protein_GI_number: 15926873 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit # Organism: Staphylococcus aureus N315 # 1 288 1 288 288 536 89.0 1e-152 MATFKDFRNSVKPNWCPGCGDFSVQAAIQKAAANLGLEPEEVALITGIGCSGRLSGYINS YGVHGIHGRALPLAQGVKMANKDLTVIASGGDGDGYAIGMGHTIHALRRNMNITYIVMDN QIYGLTKGQTSPSSAVGFVTKSTPKGNIEKNVAPLELALSSGATFVAQGFSSDIKALTKL IEDAINHDGFSFVNVFSPCVTYNKVNTYDWFKEHLTSIEDIENYDPTDKQLAMKTVLEHE SLVKGIVYQDTTTPSYESQIEELDESALTKRDIHLSEQEFNDLTAQFV >gi|312979642|gb|ACRM01000023.1| GENE 34 33390 - 35150 2189 586 aa, chain - ## HITS:1 COG:SA1131_2 KEGG:ns NR:ns ## COG: SA1131_2 COG0674 # Protein_GI_number: 15926872 # Func_class: C Energy production and conversion # Function: Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit # Organism: Staphylococcus aureus N315 # 190 586 2 398 398 628 80.0 1e-179 MKPQISWKVGGQQGEGIESTGELFATAMNRKGYYLYGYRHFSSRIKGGHTNNKIRVSTSP IHAISDDLDILVAFDQETIELNHHEMREDSIIIADAKAKPSKPDDCRAQLIELPLTLTAK ELGTALMKNMVAIGATCAVMKLDTTPFETLITNMFTKKGQKVVEMNIEALHQGYELMKDK LDTVNGDFLLEDSEGTPHLYMIGNDAIGLGAISAGSRFMAAYPITPASEIMEYMIANVPK VGGTVVQTEDEIAAANMAIGANYAGVRAFTASAGPGLSLMMEAIGLSGMTETPLVIVNTQ RGGPSTGLPTKQEQSDLMQMIYGTHGDIPKIVVAPTDAEDAFYLTMEAFNLAEEYQCPVI VLSDLQLSLGKQTVKQLDYNRIQIKRGELIQSDIERDEDDKSYFKRYALTTSGISQRPIP GVKGGIHHVTGVEHNQEGKPSEAADNRREQMEKRMSKTANLLIETPVDYDEKHEKADILY IGFISSKGAIEEGSKRLNNNGIKVNTMQIRQLHPLPKDIIQQAIDKASSVIVAEHNYQGQ LSNILKMNTAIQDKLVNQAKYDGTPFLPHEIEEKGLSVAKDMKEMM >gi|312979642|gb|ACRM01000023.1| GENE 35 35260 - 36054 956 264 aa, chain - ## HITS:1 COG:SA1130 KEGG:ns NR:ns ## COG: SA1130 COG1692 # Protein_GI_number: 15926871 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 262 1 262 265 459 82.0 1e-129 MRILFIGDIVGKVGRNAIAEYLPKLKQAYKPTLSIVNAENAAHGKGLTEKLYKQLLRDGV DFMTMGNHTYGQREIYDFIDDAKRMIRPANFPSEAPGVGMRFIQVNDIKVAIINLQGRSF MQDIDDPFKKADQLIEEAKKETNYIFVDFHAETTSEKNAMGWYLDGRVSAIVGTHTHIQT SDERILPNGTGYITDVGMTGYYDGILGINREEVIKRFITSLPQRHVVPDNGRSVLSGVII DLDKNGRTKLIERILINEDHPFDK >gi|312979642|gb|ACRM01000023.1| GENE 36 36208 - 36423 356 71 aa, chain + ## HITS:1 COG:no KEGG:SH1626 NR:ns ## KEGG: SH1626 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 71 1 71 71 107 91.0 2e-22 MSINIDPEKFAELVVKANPSKSEDAEDMAKESLELYINAYRLAERYSNIATNCYDTAEIL SEIKKTDLQLK >gi|312979642|gb|ACRM01000023.1| GENE 37 36498 - 38057 2158 519 aa, chain - ## HITS:1 COG:SA1129 KEGG:ns NR:ns ## COG: SA1129 COG1418 # Protein_GI_number: 15926869 # Func_class: R General function prediction only # Function: Predicted HD superfamily hydrolase # Organism: Staphylococcus aureus N315 # 21 519 21 519 519 707 92.0 0 MNLLDLLLILLGIILGVVVGYFLARNILHQKQIQARQTANDIIKQGQKEADNIKKEKLLE AKEENQIIREQVETELRERRSELQRQEARNLQKEENLDRKSELLDKKDEILDQKESKIEE RQQQVDAKESSVQTLIMKHEQELERISGLTQEEAVNEQLHRVEEELSQDIAVLVKEKERE AKEKVNKTAKELLATTVQRLAADHTTESTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG IDLIIDDTPEAVILSGFDPIRREIARTALVNLVSDGRIHPGRIEEMVDKARKEVDDIIRD AGEQATFEINVHNMHPDLVKILGRLNYRTSYGQNVLKHSMEVAHLSGMLAAELGEDVSLA KRAGLLHDVGKAIDHEVEGSHVEIGVELAKKYGEVETVINAIHSHHGDVEPTSIISILVA AADALSAARPGARKETLENYIRRLERLETLSESYEGVEKAFAIQAGREIRVIVSPEEIDD LKSYRLARDIKNQIEEELQYPGHIKVTVVRETRAVEYAK >gi|312979642|gb|ACRM01000023.1| GENE 38 38334 - 39380 1418 348 aa, chain - ## HITS:1 COG:SA1128 KEGG:ns NR:ns ## COG: SA1128 COG0468 # Protein_GI_number: 15926868 # Func_class: L Replication, recombination and repair # Function: RecA/RadA recombinase # Organism: Staphylococcus aureus N315 # 1 348 1 347 347 607 94.0 1e-174 MDNDRQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSVSSGSVTLDNALGVGGYPKGRI IEIYGPESSGKTTVALHAIAEVQKNGGVAAFIDAEHALDPVYAEALGVDIDNLYLSQPDH GEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGDTHVGLQARLMSQALRKLSGA ISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR TKIKVVKNKVAPPFRIAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGERMGQG KENVKTYLKENPQIKDEIDRKLREKLGIFDGDVEENEDKSSQTLFDEE >gi|312979642|gb|ACRM01000023.1| GENE 39 39557 - 40696 1233 379 aa, chain - ## HITS:1 COG:SA1127 KEGG:ns NR:ns ## COG: SA1127 COG1058 # Protein_GI_number: 15926867 # Func_class: R General function prediction only # Function: Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA # Organism: Staphylococcus aureus N315 # 1 378 1 378 383 463 60.0 1e-130 MNTSIIAVGSELLLGQIANTNGQYLSKLFNQIGKNIVEHTVIGDNPDRLEFIIREGLKRF DTLVLTGGLGPTKDDLTKQTVAKVLNKNLVTNEEALNYIEGFFKEQGQEMTPNNKQQALV IEGAKVLKNHYGMAPGMFIEMNDKKVILLPGPPSEMQPMAKNELLPLLIDNDNTIFSEQL RFAGIGESKVETELMDLIEKQTNPTIAPLAGKHEVYIRLTANASTQSECKTLIQPIKEEI LERIGQFYYGSDDTLLEQSVMEQMNSTVSIYDGVTDGAIYTRLKRFDKQNILKGILPDND IFLNHHSSIEMQLRDAASYVKDLYKTEMGIAILHEKENIYLAINTKDDFKMTTFKITQSR NILPNRSQNYVLIRLLNWH >gi|312979642|gb|ACRM01000023.1| GENE 40 40830 - 41405 282 191 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|229231897|ref|ZP_04356325.1| SSU ribosomal protein S12P methylthiotransferase [Cryptobacterium curtum DSM 15641] # 5 188 484 668 904 113 36 8e-24 MNIPNQITVFRVILIPVFILFALVNFGFGNVSVLGGYDIRIEQLIAAIIFIVASLSDFLD GYLARKWQLVTNMGKFLDPLADKLLVSSALIVMVQLGLTNSVVAIIIIAREFAVTGLRLL QIEQGFVSAAGQLGKIKTAVTMVAIIWILLGDLFSNWIGFQLGQVLLYIGVFFTILSGIE YFYKGRDVFKQ >gi|312979642|gb|ACRM01000023.1| GENE 41 41438 - 41830 610 130 aa, chain - ## HITS:1 COG:SA1125 KEGG:ns NR:ns ## COG: SA1125 COG1426 # Protein_GI_number: 15926865 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 129 1 129 130 145 56.0 1e-35 MKTIGETLKGRRERLGMTLTELEQRTQLKRETLKYIEENKFDQLAKVDYAEGFIRRYASV VNMDVNQLIKVHHEEIPNHHNQLDTLLHHYRHNEVPEYRTKNKEPIQLLIMISIVIIITL IIWVLAVLLI >gi|312979642|gb|ACRM01000023.1| GENE 42 41851 - 42693 1055 280 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01613 NR:ns ## KEGG: SLGD_01613 # Name: not_defined # Def: ACT domain protein # Organism: S.lugdunensis # Pathway: not_defined # 1 265 1 263 277 433 84.0 1e-120 MTVAKKKEWYLEYEIIVNRAGLLGDVSSLLGMLGISIITINGVDQGRRGLLIKTDSLEKV TRFENIIHELKEIEITKLRIPELRDRLAVRHGRYIEQDAGDKKTFRFEREDLGLLVDFLA ELFKEDGHKLIGIRGMPRVGKTESIVAGSVCAHKRWLFISSTLIKQTVRSSLIKGEYDAN HVYIIDGAVTARETNPKHQQLVEEVMTLPSIKVVEHPDLFIETNQYSIDDFDYIIELREH ENQKIEYDHMKQQVKQQAIKSKNTLDFGEDVFGGGFGFFE >gi|312979642|gb|ACRM01000023.1| GENE 43 42811 - 43515 755 234 aa, chain - ## HITS:1 COG:SA1123 KEGG:ns NR:ns ## COG: SA1123 COG1028 # Protein_GI_number: 15926863 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 335 67.0 3e-92 MKALIFGGSGSIGSAIVDRLLKDGYEVILQYYQSDISSLEKKYKGEAVEFIQMDLTHDID FNDIFSHIKHLDCLIYSSGTSLYGMLQDMKDKEIDECYHIHVKQLIRCCRYFIDILRKST NGRIIVISSIWGETGASMETIYSAMKSAQIGFVKALSQELALTNVTVNAIAPGFVSGRMA KAFSDEDKAVILSELPQQRMIAPQEVAHVCAYLCHPNAKSITGTVQKVNGGWYI >gi|312979642|gb|ACRM01000023.1| GENE 44 43518 - 44804 1386 428 aa, chain - ## HITS:1 COG:SA1122 KEGG:ns NR:ns ## COG: SA1122 COG0612 # Protein_GI_number: 15926862 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 1 427 1 426 428 649 79.0 0 MQEQYYELIDERVYKHELNNGLRLFVIPKKGFQKTYVTYTTQFGSLDNTFKPHHKDQYVT VPDGVAHFLEHKLFEKDDDKDLFTAFANDNAQVNAFTSFDRTSYLFSATDQVERNILRLL DMVETPYFSKETVDKEKGIIAEEIKMYQEQPGYKIMFNTLRAMYHHHPIKVDIAGSVESI YSITKDDLYLCYETFYHPSNMVLFVVGDVDPKRICNVIEEHENRRHKTNQPSIQRGAIKE PNEVVQSFVSEKMKLQSPRLMLGFKNEPLNEAPEKYVQRDLEMTLFFELVFGEETDFYQS LLNDDLIDDSFGYQFVLEPTYSFSIITSATHKPDQLKDRLLTELKKYRGNLKDSEAFELL KKQFIGEFISSLNSPEYIANQYAKLYFEGVSVFDMLDIVENITLDSINETAKQYLNIDRL VDSRLEID >gi|312979642|gb|ACRM01000023.1| GENE 45 44804 - 46069 1236 421 aa, chain - ## HITS:1 COG:SA1121 KEGG:ns NR:ns ## COG: SA1121 COG0612 # Protein_GI_number: 15926861 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Staphylococcus aureus N315 # 1 419 1 419 421 521 65.0 1e-147 MKQHTNHQIHIDILPTEKFKTTMITFKFMAPLDYETITARSLLSKVLVRATKKWPTDRSF NQQLSELYGAYINSFVSKFKDKHVITISLEIVNERYLKDTTPLFEKGLNLLKEVIMNPLV ENNSFNSTFVTQEKSLLHKKIEAMIDNKAQYSFINLLKYMFKSEAYRYLAIGQIENIARI TNESLYDTYKSMINNDMCSVYVVGNVNKKEVTSLIENSFSLSSTTFDFNHNVNTDCNAQS TETIIEKDTVDQAKLNLGYRFPTHYGNEDYYALVVLNTMFGGDPSSVLFNEVREKQSLAY SIHSQLDGKNGYLFVLSGVSVEKYDTAKNTIIEEFEKFKVGEFSEEKLALAKKIIISQRQ EIADRPKGIIEVMQNQLLLNQPQSDKEYMELINKVTKEDVVKMANQAYLDTIYVLTKGGQ S >gi|312979642|gb|ACRM01000023.1| GENE 46 46097 - 46813 662 238 aa, chain - ## HITS:1 COG:SA1120 KEGG:ns NR:ns ## COG: SA1120 COG2188 # Protein_GI_number: 15926860 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 235 1 235 237 301 63.0 7e-82 MTELNSVFKVKEYIFKKIKNHSLKPGDKLPSNLSIAREVNVKTDDVYEAIGELIIEQVLT DNFEEGTSIKALRPFYYPLNKLFSISEMIKKAGYEASTEYLSLEQQPASLLDAKMLDIED KQPITIIERLRTANHQPVIYCLDKIAEHHLTCTEYQESDGSMLNAIELNTGHKVASAETE IEAISYEPHISSILNAEPHEGLMLLKVVHYDEMGKPILYSLNYIKSSLVKFKLTRTKI >gi|312979642|gb|ACRM01000023.1| GENE 47 46816 - 49239 2452 807 aa, chain - ## HITS:1 COG:SA1119 KEGG:ns NR:ns ## COG: SA1119 COG1674 # Protein_GI_number: 15926859 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: DNA segregation ATPase FtsK/SpoIIIE and related proteins # Organism: Staphylococcus aureus N315 # 28 807 23 788 788 1075 72.0 0 MPRTKKKTMTRKTNSKTKTKARQSKKKKQQKTDSSIRYIITIITVIISILGIFQLGLVGR MIDSFFNYLFGASRYLTYILVSLITIYIAMQRHFPKTRRTFGLILLQFVLLIVSQLIYYF SKGEVAKREPVLSYVYKSYEHTHFPNFGGGIIGFYLLKLFVPLISIAGIIIVALILLISS FILLLKLHHRDVARSTIDYFKRSTQSASSTLKEKREANKIRREERLREKEEQRQALAHQR ELEEQQRKDEVIKDVSDFPEVKQQHKDIPIYSHHAATEEEKVRPKRKKRQFDIDHQDKEP THVSSSNSMKKDKIKHVSNDNDTNNSSIIEAGEVGNVAYHIPPLSLLKQPTKQTTTSRAE VQRKGQILESTMKNFGVNAKVTQIKIGPAVTQYEVQPAQGVKVNKIVNLHNDIALALAAK DIRIEAPIPGRSAVGIEVPNDKISLVTLKEVLESKFPAKNKLEVGLGRDISGEPMTIELN ETPHLLVAGSTGSGKSVCINGIITSILLNAKPHEVKLMLIDPKMVELNVYNGVPHLLIPV VTNPHKASQALEKIVAEMERRYDLFQHSSTRNIEGYNQFIRRQNEELDEKQSELPYIVVI VDELADLMMVAGKEVENAIQRITQMARAAGIHLIVATQRPSVDVITGIIKNNIPSRIAFA VSSQTDSRTIIGSGGAEKLLGKGDMLYVGNGESTQTRVQGAFLSDQEVQEVVNYVVEQQK ANYVKEMEPDAPVEKSEMKSEDTLYDDAYAFVIEKQKASTSLLQRQFRIGYNRASRLMDD LERNNVIGPQKGSKPRQVLIDFENEEV >gi|312979642|gb|ACRM01000023.1| GENE 48 49576 - 51291 1947 571 aa, chain - ## HITS:1 COG:SA1118 KEGG:ns NR:ns ## COG: SA1118 COG0595 # Protein_GI_number: 15926858 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Staphylococcus aureus N315 # 15 571 1 557 557 1012 91.0 0 MSLYGRELIIGGNILSLVKKKNDDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPE DEMLGVDIVIPDIQYVVENKDKLKGIFLSHGHEHAIGAVSYILEQVDAPIYGSKLTLALV KESIKKRNIKKKVRYYTVNHDSVMRFKNVNITFFNTSHSIPDSLGICIHTSYGSIVYTGE FKFDQSLQGHYAPDMKRMAEIGEEGVFALISDSTEAEKPGYNTPENVIESHIYDAFAKVK GRLIVSCYASNFIRIQQVLNIASKLNRKVSFLGKSLESSFNTARKMGYFDIPKDLLLPIN EVENYPKNEVVIIATGMEGEPIEALSQMAQHKHKILNIEEGDSVYLAITASANMEVIIAN TLNELVRAGAHIIPNNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLAN EAGVAPEKIFLVEKGDVIHFDGSHMVLNEKVNSGNILIDGIGVGDVGNIVLRDRHLLAED GIFIAVVTLDPKNRRIAAGPEIQSRGFVYVRESEELMKEAEDKVREIVEAGLQEKRIEWS EIKQNMRDQISKLLFESTKRRPMIIPVISEI >gi|312979642|gb|ACRM01000023.1| GENE 49 51454 - 53550 1728 698 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|62291006|ref|YP_222799.1| polynucleotide phosphorylase/polyadenylase [Brucella abortus bv. 1 str. 9-941] # 11 698 10 696 714 670 50 0.0 MSQEKKVFKTEWAGRSLTIETGQLAKQANGAVLVRYGDTVVLSTAVASKEPRDGDFFPLT VNYEEKMYAAGKIPGGFKKREGRPGDEATLTARLIDRPIRPLFPKGYRHDVQIMNTVLSA DPDCSPEMAAMIGSSMALSVSDIPFQGPIAGVNVGYIDGTYVINPTLEQKEVSRLDLEVA GHKDAVNMVEAGASEITEQEMLEAIFFGHEEIKRLVAFQEEVVEHIQPVKKEFIPVERDE ELVQRVKSLTEEKGLKETVLTFDKQQRDENLDALKAEIATEFVDEADPENELLIDEVYAI LNDLIKEEVRRLIADEKIRPDGRKPDEIRPLESEVGLLPRAHGSGLFTRGQTQALSVLTL GALGDYQLIDGLGPEIEKRFMHHYNFPNFSVGETGPVRAPGRREIGHGALGERALRYIIP DTTEFPYTIRIVSEVLESNGSSSQASICGSTLALMDAGVPIKAPVAGIAMGLVTREDSYT ILTDIQGMEDALGDMDFKVAGTKEGITAIQMDIKIDGLTREVIEEALEQARQGRLAIMDH MLQTIDQPRSELSAYAPKVEIMHIKPEKIRDVIGPGGKKINEIIDETGVKLDIEQDGTIF IGAVDQEMINRAREIINEITREAEVGQVYHAKVKRIEKYGAFVELFPGKDALLHISQISK DRINKVEDVLKIGDTIEVKITEIDKQGRVNASHKVLDE >gi|312979642|gb|ACRM01000023.1| GENE 50 53686 - 53955 451 89 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475039|ref|ZP_04059767.1| ribosomal protein S15 [Staphylococcus hominis SK119] # 1 89 1 89 89 178 100 2e-43 MAITQERKNEIIKEYRVHETDTGSPEVQIAVLTAEITALNEHLREHKKDHHSRRGLLKMV GRRRHLLNYLRSKDIQRYRELIKSLGIRR >gi|312979642|gb|ACRM01000023.1| GENE 51 54066 - 55037 703 323 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762565|ref|ZP_02169630.1| ribosomal protein S2 [Bacillus selenitireducens MLS10] # 1 308 1 309 317 275 44 1e-72 MKVIEITHPIQNEQLIKEDVAMAFGFFDGMHRGHSKVFEALDIRAKEKNLKKAVTTFDPH PSVVLNPERKRTDYLTPLSDKLEMIEHHDIDYCIVINFSSRFANVTAEEFIKDYIINNHV KEVVAGFDFTFGKFGKGNMAVLNEIDEFNTTIVGKLDLDSEKISTTSIRQALHEGNLQKA NDELGYLYRIKGTVVQGEKRGRTIGFPTANVQPSDDYVLPKKGVYAVSIEIGAEHKIYRG VANVGVKPTFHDPSKAEVVIEVNIFDFEENIYGERVIVYWHHYLRPEVKFDGIDALVSQM NDDKERAKYLLAVDFGDDVSYNI >gi|312979642|gb|ACRM01000023.1| GENE 52 55055 - 55972 920 305 aa, chain - ## HITS:1 COG:SA1114 KEGG:ns NR:ns ## COG: SA1114 COG0130 # Protein_GI_number: 15926854 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridine synthase # Organism: Staphylococcus aureus N315 # 1 305 1 305 305 419 70.0 1e-117 MYNGILPVYKERGLTSHDVVFKLRKILKTKKIGHTGTLDPEVSGVLPICIGTATRVSDYV MDMGKSYQATITLGESTTTEDQTGEVIEKVNIAANTITSIEVDRVLEEFKGVIEQIPPMY SSVKVNGKKLYEYARKGETIERPKRQVKIDEIERISDLTFIEQTCHFDIKVTCGKGTYIR TLATDIGKALGYPAHMSLLTRINSGGFNINESLSLEKISELHEHETLQHYLFPIEYGLKS LQHVVIDDDTLKYRILNGQKLLKKDFTLSLEKQFVFIDKISEKALAIYEHHPDKINEIKP KKVFN >gi|312979642|gb|ACRM01000023.1| GENE 53 56184 - 56534 573 116 aa, chain - ## HITS:1 COG:SA1113 KEGG:ns NR:ns ## COG: SA1113 COG0858 # Protein_GI_number: 15926853 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-binding factor A # Organism: Staphylococcus aureus N315 # 1 116 1 116 116 182 89.0 9e-47 MSNMRAERVGEQMKKEVMDIINNKVKDPRVGFITITDVELTNDLSQAKVFLTVLGNKKEV NDTFKALDKAKGFIKSELGSRMRLRIVPELFFEYDESIEYGNKIEKMIQDLHKQDK >gi|312979642|gb|ACRM01000023.1| GENE 54 56629 - 58725 2507 698 aa, chain - ## HITS:1 COG:SA1112 KEGG:ns NR:ns ## COG: SA1112 COG0532 # Protein_GI_number: 15926852 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation initiation factor 2 (IF-2; GTPase) # Organism: Staphylococcus aureus N315 # 1 698 1 705 705 1053 85.0 0 MSKKRIYEYAKEVNVKSKEIIDELKKMDVEVSNHMQALEDDQIKMLNKKFKSSKNEENKK QNTQNNHQKQQNKKDNNQNKSNSKKKNNKNSKNNKNNKNNKKGKNNKPAAEPKEMPSKIT YEEGITVGELADKLNIESSDIIKKLFLLGIVANINQSLDEETLELIADDYGVEIEKEVVV NEEDLTTYFDDEEDDPDAIERPAVVTIMGHVDHGKTTLLDSIRNTKVTAGEAGGITQHIG AYQIENNGKKITFLDTPGHAAFTTMRARGAQVTDITILVVAADDGVMPQTIEAINHAKEA DVPTIVAVNKVDKPTANPDRVMQELTEYGLIPEDWGGDTIFVPLSALNGDGIDDLLEMIG LVAEVQELKANPDKQAVGTVIEAELDKSRGPAASLLVQNGTLHVGDSIVVGNTYGRVRAM VNDLGQRIKTAGPSTPVEITGINDVPQAGDRFVIFKDEKQARRIGEARHEANVIQQRQES KNVSLDNLFEQMKQGEMKDLNVIIKGDVQGSVEALAASLMKINVEGVNVRIIHTAVGAIN ESDVTLANASNGIIVGFNVRPDAGAKRAAEAENVDMRLHRVIYNVIEEIESAMKGLLDPE FEEQVIGQAEVRQTFKVSKVGTIAGSYVTEGKITRNAGVRVIRDGIVQFEGELDTLKRFK DDAKEVSQGYECGITIANFNDIKEGDIIEAFEMVEIER >gi|312979642|gb|ACRM01000023.1| GENE 55 58730 - 59047 528 105 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475080|ref|ZP_04059808.1| ribosomal protein L7AE family protein [Staphylococcus hominis SK119] # 1 105 1 105 105 207 100 2e-52 MTKEQIFNFLGLAMRARKVKVGESVLISEIKKRNIKLVILSTDASDNAKKNIKNKCDTYH VPFRVFGTRVELGQSLGKEERVNVGVTDSGFAKKLMSMIDEYCKE >gi|312979642|gb|ACRM01000023.1| GENE 56 59044 - 59328 106 94 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|118579398|ref|YP_900648.1| hypothetical protein Ppro_0962 [Pelobacter propionicus DSM 2379] # 7 92 10 96 200 45 27 4e-12 MKKKKIPMRKCIITNEMRPKKDMIRVVINKEGEIFADGTGKQQGRGAYVSKDVKSVEDAQ KNGVLEKYFNESPEKLDPVYKEVIRLIYREEIPK >gi|312979642|gb|ACRM01000023.1| GENE 57 59358 - 60584 803 408 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|17988250|ref|NP_540884.1| transcription elongation factor NusA [Brucella melitensis 16M] # 5 393 9 387 537 313 42 3e-84 MASNELLLATEYLEKEKKIPREVLIDAIEAALITAYKKNYDSARNVRVELNMDEGTFKVI ARKEVVEEVFDDREEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLR DAEREILYSEFIDKEEDILTGVIDRVDHRYVYVNLGRIEAVLSEAERSPNETYVPNERIK VYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVPEIYDGTVIVKSVAREAGDRSKISVYS ENPDIDAVGACVGAKGSRVEAVVEELGGEKIDIVQWDEDPNVFVRNALSPSQVLEVIVDE DNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYPIIESEEKAD EIVFSEDKDIEIDDINLEETNLTTAELSAEVDETSNEAQDASDNKEEH >gi|312979642|gb|ACRM01000023.1| GENE 58 60605 - 61072 552 155 aa, chain - ## HITS:1 COG:SA1108 KEGG:ns NR:ns ## COG: SA1108 COG0779 # Protein_GI_number: 15926848 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 155 1 155 155 231 80.0 3e-61 MSKITEEVETIITPILDDLNFELVDVEYAKEGKDRFLRISIDKEGGVDLNDCTLASEKIS EAMDQNDPIPEMYYLDVASPGAERPLKKEKDYQNAIEQPVFVSLYAPIEGDKEWLGILKS VDDDTITMEVKEKSKKKTIEIPRNKIAKARHAVMI >gi|312979642|gb|ACRM01000023.1| GENE 59 61218 - 65534 4806 1438 aa, chain - ## HITS:1 COG:SA1107 KEGG:ns NR:ns ## COG: SA1107 COG2176 # Protein_GI_number: 15926847 # Func_class: L Replication, recombination and repair # Function: DNA polymerase III, alpha subunit (gram-positive type) # Organism: Staphylococcus aureus N315 # 1 1438 1 1438 1438 2667 90.0 0 MAMTSQEKFRVLADQIKISNQLDKEILEKGELTRIDVSNKNRSWEFQITLPYFLSNEDYL IFTHAIKEEFKDIAHVDWHFTIQNTSNQDEHVIKYFGHCIEHTALSPKVKGQLKQKRLIM SGNVLKIMTSNDIERNHFDKVCNGSLVKAFQKCGFDIDKVIFETDDSNRDEDLASLEAHI QEEDQQSAKEATEKIEKIKAEKAKQQDNNGSSVEKCQIGKPIHVENIKPIETIIEEEFKV AIEGVIFDINIKELKSGRHIVELKVTDYTDSLVLKMFTRKNKDDLNHFKALSVGKWVRAQ GRIEEDTFVRDLVMMMSDIEEIKKTPKQDKAEEKRVEFHLHSSMSQMDGIPNISAYVNQA AAWGHKAIAVTDHNVVQAFPDAHSAAEKNGIKMIYGMEGMLVDDGVPIAYKPTDRNLKDA TYVVFDVETTGLSNQYDQIIELAAVKVKDGEIIDKFERFSNPHEKLSETIINLTHITDDM LVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTNGVIDTLELSRT INTEYGKHGLNFLAKKYGVELTQHHRAIYDTEATAYIFIKMVQQMKELGVANHKDINKKL SNEDAYKRARPTHVTLIVQNQDGLKNLFKIVSASLVKYYYRTPRIPRSLLNEYREGILVG TACDEGELFTAVMQRDQSEVEKIAKYYDFIEVQPPKLYQDLIDRELIRDTETLYEIYDRI LKAGESTGIPVIATGNAHYLFEHDAIARKILIASQPGNPLNRSTLPEAHFRTTDEMLDEF HFLGEDKAYDIVVKNTNELADRIEKVIPIKDQLFTPRMEGANEEIRELSYTNAKKLYGDD LPQIVIDRLEKELDSIIGNGFSVIYLISQRLVKKSLDDGYLVGSRGSVGSSFVATMTEIT EVNPLPPHYICPHCKTSEFFDDGSVGSGFDLPDKTCETCGGELIKEGQDIPFETFLGFKG DKVPDIDLNFSGEYQPHAHNYTKVLFGEDKVFRAGTIGTVAEKTAFGFVKGYLNDQGIHK RGAEIDRLVKGCTGVKRTTGQHPGGIIVVPDYMDIYDFTPIQYPADDQSAPWMTTHFDFH SIHDNVLKLDILGHDDPTMIRMLQDLSGIDPKTIPVDDKETMQIFSSPASLGVTEEDILC KTGTFGVPEFGTGFVRQMLEDTKPTTFSELVQISGLSHGTDVWLGNAQELIRSGICDLSS VIGCRDDIMVYLMYAGLEPSMAFKTMESVRKGKGLTDEMINAMKANDVPDWYLDSCLKIK YMFPKAHAAAYVLMAVRIAYFKVHHPLYYYAAYFTIRASDFDLITMIKDKESIKNTVKDM YSRYMDLGKKEKDVLTVLEIMNEMAHRGFKMQPISLEKSQAFDFIIEDDTLIPPFIAVPG LGENVAKRIVEAREDGPFLSKEDLNKKAGLSQKIIEYLDDLGSLPDLPDKAQLSIFDM >gi|312979642|gb|ACRM01000023.1| GENE 60 65697 - 67397 2096 566 aa, chain - ## HITS:1 COG:SA1106 KEGG:ns NR:ns ## COG: SA1106 COG0442 # Protein_GI_number: 15926846 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Prolyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 566 1 566 567 964 83.0 0 MKQSKVFIPTMREVPSEAEALSHQLLLKAGLIKQSTSGIYSYLPLATRVLNHISRIIREE MENIDAVEILMPALQQAELWEESGRWGAYGPELMRLKDRNGREFALGPTHEEVVTSIVRD ELKSYKQLPLTLFQIQSKFRDEKRPRFGLLRGREFIMKDAYSFHADEASLDQTYQEMYNA YSRIFKRVGINARPVVADSGAIGGHHTHEFMALSEIGEDTIVYSENSDYAANIEKAEVKY YPNEKHTDIKSLEKIETPNIKTAQELADFLNRPIDEIVKTMIFKVDGEFMMFLVRGHHEL NDVKVKAYFETDSVEMATQDEIVNLLGANPGSLGPIHNKDIKIIADNFVKDLNNIVIGAN EDGYHYINANVERDFNIDEYGDFRFILEGEPLSDGSGNAKFAEGIEVGQVFKLGTKYSEA MNAKFLDNQGKAQPLIMGCYGIGVSRTLSAIVEQNNDENGIIWPKSVTPFDLHLITINPK KEEQLELGDKLYSELQSKYDVLYDDRKERAGVKFNDADLIGLPIRIVVGKNASEGIVEVK VRQTGESEEVHINELDNHIASLYEKL >gi|312979642|gb|ACRM01000023.1| GENE 61 67414 - 68700 1629 428 aa, chain - ## HITS:1 COG:SA1105 KEGG:ns NR:ns ## COG: SA1105 COG0750 # Protein_GI_number: 15926845 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane-associated Zn-dependent proteases 1 # Organism: Staphylococcus aureus N315 # 1 428 1 428 428 709 79.0 0 MSYLITIVSFIIVFGVLVTVHEYGHMFFAKRAGIMCPEFAIGMGPKIFSFRKDETLYTIR LLPVGGYVRMAGDGLEEPPIQPGMNVKIKLNEQDEITHIILDDQHKFQKIEAIEVKRCDF KDDLYIEGITAYDNERHHFNIAKKAYFVENGSLIQIAPRHRQFTHKKPLPKFLTLFAGPL FNFILALVLFIGLAYYQGTPTPTVKQLADHYPAQEAGLKPGDKIVQVGHYKINDFSDIQN ALNKTKDHQTTIKIVRDGHTKSLDVTPKKQVIKQTKLNSKTSYVLGFQPENEHSLFKPLA LGVQQFFDKSVLIFKAVGTMIGSIFTGGFTFDMLNGPVGIYHNVDSVVKQGIIALTYYTA LLSVNLGIMNLLPIPALDGGRILFVIYEAIFRRPVNKRAETAIIAVGAIFVVIIMVLVTW NDIQRYFL >gi|312979642|gb|ACRM01000023.1| GENE 62 68906 - 69688 863 260 aa, chain - ## HITS:1 COG:SA1104 KEGG:ns NR:ns ## COG: SA1104 COG0575 # Protein_GI_number: 15926844 # Func_class: I Lipid transport and metabolism # Function: CDP-diglyceride synthetase # Organism: Staphylococcus aureus N315 # 1 259 1 259 260 370 85.0 1e-102 MKVRTLTAIIALLIFLPILLKGGTVLMLFAYLLALIALKELLNMNMITFLSIPGSFSALA LIIIMLPQSAGDWVSDVQLKSLIAMSFILLSYTVLSKNRFSFMDAAFCLMSVAYVGIGFM YFYATRSYGLHYILFAFLIVWLTDTGAYIFGRLMGKHKLWPVISPNKTIEGFIGGLICSL IVPLVMMFFVDFHLNVWLLLLITIILSVFGQLGDLVESGFKRHFGVKDSGRILPGHGGIL DRFDSFMFVLPLLNILLLQM >gi|312979642|gb|ACRM01000023.1| GENE 63 69692 - 70462 797 256 aa, chain - ## HITS:1 COG:SA1103 KEGG:ns NR:ns ## COG: SA1103 COG0020 # Protein_GI_number: 15926843 # Func_class: I Lipid transport and metabolism # Function: Undecaprenyl pyrophosphate synthase # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 413 80.0 1e-115 MFRKLIKRNKTKINQNDDLDIHNLPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKV TRQASHLGIKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKIETIGFL DAVPQSTIEAINYAKEKTKNNTGLKLVFAINYGGRAELVQSMKSIYDELQRNGQNSDDID ELMISKHLMTHPYPDPDLLIRTSGEQRLSNFLIWQASYSEFIFNEKLWPDFDGEELKQCI KIYQSRQRRFGGLSEE >gi|312979642|gb|ACRM01000023.1| GENE 64 70648 - 71202 771 184 aa, chain - ## HITS:1 COG:SA1102 KEGG:ns NR:ns ## COG: SA1102 COG0233 # Protein_GI_number: 15926842 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome recycling factor # Organism: Staphylococcus aureus N315 # 1 184 1 184 184 254 88.0 5e-68 MSEIIQDTKSRMKKSIENLSRELANISAGRANSNLLNGVNVDYYGAPTPVQQLASINVPE ARLLVISPYDKTSVADIEKAIIAANLGVNPTSDGEVIRITVPALTEERRKELVKNVKKIG EDSKVSIRNIRRDINDQLKKDEKNGDITEDDLRSQTEDVQKVTDNSIKEIDNLVDEKEKD IMSV >gi|312979642|gb|ACRM01000023.1| GENE 65 71219 - 71941 897 240 aa, chain - ## HITS:1 COG:SA1101 KEGG:ns NR:ns ## COG: SA1101 COG0528 # Protein_GI_number: 15926841 # Func_class: F Nucleotide transport and metabolism # Function: Uridylate kinase # Organism: Staphylococcus aureus N315 # 1 240 1 240 240 446 95.0 1e-125 MAHTSKYKRVVLKLSGEALAGEKGFGINPIIIKSVAKQVAEVAKMNCEIAVIVGGGNIWR GKTGSDLGMDRGTADYMGMLATVMNALALQDSLEQLDCDTRVLTSIEMKQVAEPYIRRRA IRHLEKKRVVIFAAGIGNPYFSTDTTAALRAAEVEADVILMGKNNVDGVYSADPKIDKNA VKYDHLTHIQMLQEGLQVMDSTASSFCMDNNIPLNVFSIMEEGNIKRAVMGEKIGTLITK >gi|312979642|gb|ACRM01000023.1| GENE 66 72079 - 72957 638 292 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|42631241|ref|ZP_00156779.1| COG0264: Translation elongation factor Ts [Haemophilus influenzae R2866] # 3 287 4 275 283 250 48 4e-65 MAISAKLVKELRERTGAGMMDCKKALTETDGDIDKAIDYLREKGIAKAAKKADRIAAEGL VHVEVKGNEAAIVEINSETDFVARNEGFQELVKEIANQILESKAETVEALLETKLSSGQT VDERMKEAISTIGEKLSIRRFAIRTKTDNDAFGAYLHMGGRIGVLTVVEGSTDEEAAKDV AMHIAAINPKYVSSDQVSDEEINHEREVLKQQALNEGKPEKIVEKMVEGRLRKYLQEICA VDQNFVKDPDQTVEAFLKSKGGKLADFVRYEVGEGMEKREENFADEVKGQMK >gi|312979642|gb|ACRM01000023.1| GENE 67 73218 - 74006 1319 262 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475062|ref|ZP_04059790.1| ribosomal protein S2 [Staphylococcus hominis SK119] # 1 262 1 262 262 512 99 1e-144 MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVEEAYNFLKQV SEDGGKVLFVGTKKQAQESVKAEAERASQFYVNQRWLGGILTNYKTISKRIKRISEIEKM EEDGLFDVLPKKEVVELKKEYDRLIKFLGGIRDMKSMPQALFVVDPRKERNAIAEARKLN IPIVGIVDTNCDPDEIDYVIPANDDAIRAVKLLTGKMADAVLEGQQGISNDEVAAEQNID LDESEETQKAESTEENTTVESN >gi|312979642|gb|ACRM01000023.1| GENE 68 74026 - 74157 78 43 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLRNDSIYDIIIDGYKANTHVVNVNIKGAVLSIVFILVYYGGN >gi|312979642|gb|ACRM01000023.1| GENE 69 74224 - 75000 1017 258 aa, chain - ## HITS:1 COG:SA1098 KEGG:ns NR:ns ## COG: SA1098 COG4465 # Protein_GI_number: 15926838 # Func_class: K Transcription # Function: Pleiotropic transcriptional repressor # Organism: Staphylococcus aureus N315 # 1 258 1 257 257 408 90.0 1e-114 MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISNVTVTNVFIVSRRGKILGSSLNELLKSE RISNMLTESKHIPSEYTELLMQVQQTKANIDIDSDLTVFPPEHREVFINSRTTIFPILGG GERLGTLILGRVKDDFNENDLVLGEYAATVIGMEILREKHNEVEKEARDKAAITMAINSL SYSEKEAIEHIFEELGGNEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKG TFIKVKKEKFLDELNRSE >gi|312979642|gb|ACRM01000023.1| GENE 70 75022 - 76422 1346 466 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762510|ref|ZP_02169575.1| ribosomal protein S16 [Bacillus selenitireducens MLS10] # 8 466 8 466 466 523 58 1e-147 MDTNGIKLTPKDIVSKLDEYIVGQEDAKRKVAIALRNRYRRSLLGEETKQEIAPKNILMI GPTGVGKTEIARRMAKIVGAPFIKVEATKFTEVGYVGRDVESMVRDLVDVSVRLVKEQKK SLVKDEATQKANEKLVKLLVPSMKKKAAQNNNPLESLLGGAIPNFNQNDEEEEAPTEEIK TKRSEIRQQLLAGKLEEEKVRIKVEQDPGALGMLGTSQNQQMQDMMNQLMPKRKVEREVP VKIARKILTDDFADELIDQETANQEALEIAEQMGIIFIDEIDKVATNNSNSGQDVSRQGV QRDILPILEGSMIQTKYGTVNTEHMLFIGAGAFHVSKPSDLIPELQGRFPIRVELESLTV NDFYRILTEPKLSLIKQYEALLKTEEVTVNFSDEAITRLAEMAYQVNQDTDNIGARRLHT ILEKMLEDLSFEAPNMPNAVVDITPQYVDDKLKSISTNKDLSAFIL >gi|312979642|gb|ACRM01000023.1| GENE 71 76489 - 77034 904 181 aa, chain - ## HITS:1 COG:SA1096 KEGG:ns NR:ns ## COG: SA1096 COG5405 # Protein_GI_number: 15926836 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ATP-dependent protease HslVU (ClpYQ), peptidase subunit # Organism: Staphylococcus aureus N315 # 1 181 1 181 181 320 94.0 7e-88 MSKTSLHATTIYAVRHNGEAAMAGDGQVTLGEQVIMKQTARKVRRLYEGKVLAGFAGSVA DAFTLFEKFETKLQQFSGNLERAAVELAQEWRGDKQLRQLEAMLIVMDKDGILVVSGTGE VIAPDDDLIAIGSGGNYALSAGRALKRHASHMTAKEMAYESLKVASDICVFTNDNIIVET L >gi|312979642|gb|ACRM01000023.1| GENE 72 77035 - 77928 822 297 aa, chain - ## HITS:1 COG:SA1095 KEGG:ns NR:ns ## COG: SA1095 COG4974 # Protein_GI_number: 15926835 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinase XerD # Organism: Staphylococcus aureus N315 # 1 297 1 297 298 461 79.0 1e-130 MEEIQKKFLNMLKVERNFSDHTLKAYHDDLAQFNQFLEQELLNLRTFEYKDARNYLSYLY SNNLKRTTVSRKISTLRTFYEFWMTQDTSVNNPFIQLVHPKKEQYLPQFFYEEEMEALFN TVSNDAKKGLRDRVVIELLYATGIRVSELVNIKVMDLDMNLPGVKVLGKGNKERFVPFGE FCRQSIEQYLEKFKPLKSKSHPYLIVNMKGDPITERGIRYLLNDVVKRTAGVTEIHPHKL RHTFATHLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLSAHPRAKKESK >gi|312979642|gb|ACRM01000023.1| GENE 73 78066 - 79373 1782 435 aa, chain - ## HITS:1 COG:SA1094 KEGG:ns NR:ns ## COG: SA1094 COG1206 # Protein_GI_number: 15926834 # Func_class: J Translation, ribosomal structure and biogenesis # Function: NAD(FAD)-utilizing enzyme possibly involved in translation # Organism: Staphylococcus aureus N315 # 1 435 1 435 435 819 92.0 0 MSQTVNVIGAGLAGSEAAYQLAERGIKVNLIEMRPVKQTPAHHTDKFAELVCSNSLRGNA LTNGVGVLKEEMRRLDSLIIAAADKARVPAGGALAVDRHDFAGYITDTLKNHPNVTVLNK EIHSIPEGHTIIATGPLTTEHLAKEIVEITGKDQLYFYDAAAPIIEKDSIDMDKVYLKSR YDKGEAAYLNCPMTEEEFNRFYDAVLEAEVAPVNEFEKEKYFEGCMPFEVMAGRGRKTLL FGPMKPVGLEDPKTGKRPYAVVQLRQDDAAGTLYNIVGFQTHLKWGAQKEVIQLIPGLEN VDIVRYGVMHRNTFINSPDVLNEKYELINNDRIQFAGQMTGVEGYVESAASGLVAGINLA HKLLGKGEVIFPRETMIGSMAYYISHAKNEKNFQPMNANFGLLPSLDRRIKDKKERYEAQ AYRALDYLENFKKTL >gi|312979642|gb|ACRM01000023.1| GENE 74 79397 - 81466 2192 689 aa, chain - ## HITS:1 COG:SA1093_1 KEGG:ns NR:ns ## COG: SA1093_1 COG0550 # Protein_GI_number: 15926833 # Func_class: L Replication, recombination and repair # Function: Topoisomerase IA # Organism: Staphylococcus aureus N315 # 1 571 1 571 571 957 90.0 0 MADNLVIVESPAKAKTIEKYLGKRYKVIASMGHVRDLPRSQMGVDVEDNYEPKYITIRGK GPVVKDLKKYAKKAKKVFLASDPDREGEAIAWHLSKILELEESKENRVVFNEITKDAVKE SFKHPRGIEMNLVDAQQARRILDRLVGYNISPVLWKKVKKGLSAGRVQSVALRLVIDREN EIRNFKPEEYWSIEGEFRYKKSKFTAKFLHYKNKPYKLKTKKDVEKITSELNGDAFEITN VNKKEKTRYPANPFTTSTLQQEAARKLNFKARKTMMLAQQLYEGIDLKRQGTVGLITYMR TDSTRISQTAKDEAKSYIEEKYGTEYTSNRKTKGKQGDQDAHEAIRPTSTLRTPDEMKAY LTRDQHRLYKLIWERFVASQMAPAILDTVALDVTQNDIKFRANGQTIKFKGFMTLYVEAK DDKDNDKENKLPKLNQGDKVTATQIEPAQHFTQPPPRYTEARLVKTLEELKIGRPSTYAP TIDTIQKRNYVKLESKRFVPTELGEIVYEQVKDYFPEIIDVEFTVNMETLLDKIAEGDIG WRKVIDNFYGSFKLDVARAEEEMEKVEIKDEPAGEDCEVCGAPMVIKMGRYGKFMACSNF PDCRNTKAIVKTIGVTCPKCKDGDVVERKSKKNRLFYGCSNYPECDFISWDKPIGRDCPK CNHYLMQHKKGRSSQVICSNCDYKEEVQK >gi|312979642|gb|ACRM01000023.1| GENE 75 81605 - 82477 758 290 aa, chain - ## HITS:1 COG:SA1092 KEGG:ns NR:ns ## COG: SA1092 COG0758 # Protein_GI_number: 15926832 # Func_class: L Replication, recombination and repair; U Intracellular trafficking, secretion, and vesicular transport # Function: Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake # Organism: Staphylococcus aureus N315 # 1 285 1 288 290 293 53.0 2e-79 MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEI SYDYIQTQLSRSQVNYVTSFSSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSRE ATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFALKHHLPTIAVLGFGHLNHYPK ETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLNN >gi|312979642|gb|ACRM01000023.1| GENE 76 82735 - 83640 1380 301 aa, chain - ## HITS:1 COG:SA1089 KEGG:ns NR:ns ## COG: SA1089 COG0074 # Protein_GI_number: 15926829 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, alpha subunit # Organism: Staphylococcus aureus N315 # 1 300 1 300 302 509 93.0 1e-144 MGVFIDKNTKVMVQGITGSTALFHTKQMLDYGTQIVAGVTPGKGGQVVEGVPVYNTVAEA KKETGANVSVVYVPAPFAADSILEAADAELDMVICITEHIPVVDMIKVKRYLEDRKTRLV GPNCPGVITADECKIGIMPGYIHKKGHVGVVSRSGTLTYEAVHQLTEEGIGQTTAVGIGG DPVNGTNFIDVLKAFNEDEETKAVVMIGEIGGTAEEEAAEWVKANMTKPVVGFVGGQTAP PGKRMGHAGAIISGGKGTAAEKIKTLNECGVKTADTPSEIGTTLIEAAKEAGIYEELLTV K >gi|312979642|gb|ACRM01000023.1| GENE 77 83662 - 84828 1571 388 aa, chain - ## HITS:1 COG:SA1088 KEGG:ns NR:ns ## COG: SA1088 COG0045 # Protein_GI_number: 15926828 # Func_class: C Energy production and conversion # Function: Succinyl-CoA synthetase, beta subunit # Organism: Staphylococcus aureus N315 # 1 388 1 388 388 679 92.0 0 MNIHEYQGKEIFRAMGVAVPEGRVAFTAEEAVEKAKELNSEVYVVKAQIHAGGRGKAGGV KIAKSLSEVETYANELLGKQLVTHQTGPEGKEVKRLYIEEGCDIQKEYYVGFVIDRATDR ITLMASEEGGTEIEEVAAKTPEKIFKETIDPVIGLSPFQARRIAFNINIPKESVNKAAKF LLSLYNVFVEKDCSIVEINPLVTTGDGDVLALDAKLNFDDNALFRHKDILELRDLEEEDP KEIQASKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDVGGGATKEKVTE AFKIILGDDNVKGIFVNIFGGIMKCDVIAEGIVAAVKEVELTLPLVVRLEGTNVKRGKEI LNESGLAIEPAATMAEGAQQIVKLVKEA >gi|312979642|gb|ACRM01000023.1| GENE 78 84956 - 85723 952 255 aa, chain - ## HITS:1 COG:SA1087 KEGG:ns NR:ns ## COG: SA1087 COG0164 # Protein_GI_number: 15926827 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HII # Organism: Staphylococcus aureus N315 # 1 255 1 255 255 321 64.0 1e-87 MPQTIKEIKALLDTIDSIEALEQHELMSDTRKGVQQNIVRRRKQLLKDQETQEHYQQMNK YENKILKDNPNALICGIDEVGRGPLAGPVVACAVILNKEHQYLGLDDSKKVSATKRKILN EQLKEGVYDYAYGIASAEEIDEFNIYNATKLAMERAINQLKQQPNHLLIDAMTLDNAMPQ TSIIKGDAKSVSIAAASIMAKEYRDGLMAEVALKYPGYDFEKNVGYGTKSHLQGLKQLGI TPYHRKTFEPVKSMI >gi|312979642|gb|ACRM01000023.1| GENE 79 85707 - 86591 1063 294 aa, chain - ## HITS:1 COG:SA1086 KEGG:ns NR:ns ## COG: SA1086 COG1161 # Protein_GI_number: 15926826 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 1 294 1 294 294 483 83.0 1e-136 MVIQWYPGHMAKAKREVTEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKK DMSNLNEMQKWEYFFTDKGFYPVAVDAKHGKNLKGVENAAIEATKEKFEKEKAKGLKPRA IRAMIVGIPNVGKSTLINKLAKKNIAQTGNKPGVTKQQQWIKVGKALQLLDTPGILWPKF EDETVGKKLSLTGAIKDSIVHLDEVAIYGLQFLIKHDVEGLKNHYNIDVETDAEILEWFD AIGRRRGLLQKGNEVDYEAVIELIINDVRNAKIGTYCFDIYSEMKGDLDYASNN >gi|312979642|gb|ACRM01000023.1| GENE 80 86847 - 89453 2108 868 aa, chain + ## HITS:1 COG:SA1085 KEGG:ns NR:ns ## COG: SA1085 COG4485 # Protein_GI_number: 15926825 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 858 10 868 868 409 32.0 1e-113 MKKFFTYLGIFIALSIIGHSYVIYRFIHDGILFTGPNDGMEQMVPIQMYLFDKWSSGNLF YSTDFGLGGDFFTDLSYYFSTNILFIINVVFIALIKIFIPLHTHDILFWMINALVMSMIK ATIAMYCTYLYSKYISNNKRLSLVVAFLFVMSPLYYRFTVYWPFFSDVFVWMPLLLLSIE RVLQKQKFGLFIVTVSLILINNFYFAYYLCLIGAGYILIRVIFRHPKDILSRSKAFLTLI ISALLGLGNSLFIFFHGAQSFLNNRRVPFSGAVDTFEKLDINTNIFFDNYLIVLLFITIQ ALLSFKLYKHYYYRLFAILTFVFIIFSFIPFIDQVFNGFSAPQKRWHFILAFNSTLLIGL FLKYFKTLTTKSYLISNIIAELVIFISAIIYHKFLAWFILVPIVSLIGLMVLIIKDRTYR FKLSYLYSISIILLSILVSIVFIKNQIYYKDHTDRGNTFYINSSLYSSDLQRALVKEMNQ NKHEDERIDWRVNEQDNTPMYQHFKGLSLYSSIFHHNILDYYYDALKINLAEESLSRYQS TNGRQNIASLFSVRYMMLKNYQNNLPFYFKKIKSSGQYGIYENILNLPSVKVTDSIYNSK KLTTAIDREHAMLKGVILSNEGTSYKDKAPNLLTQSSLSYKNLKHLNGNVYKVIGDKGGT LTIHLPQPLRQKYDDFYVTMKIKRGNPDSNYTVSVNNYANHRLFNNSTYRTGIDTQLYRT RPDNKGNINITLSPKGTFYLNLQQLNGENYKMLKQMHKKADFNNKYKDIKNGVEVNLAKH GKGIASINIPYREGMQAYVNGHRIKPMKVNYMMTGVPVNSSAKKIIIKYQPPYWNTMILI SLISIIISVVFVRFVNTKKRKMRKNIDQ >gi|312979642|gb|ACRM01000023.1| GENE 81 89473 - 92067 1929 864 aa, chain + ## HITS:1 COG:SA1085 KEGG:ns NR:ns ## COG: SA1085 COG4485 # Protein_GI_number: 15926825 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 860 13 868 868 867 54.0 0 MTFLSIFIIANIISLAIYYPFIRDYFKEGFVFSGSGDGFRQMMPFQMYLYEHYSKFKGAY DQSFGLGGDYIKGLAYYYSLSPIMWINFFIIWVSHFLFHWQTSHIAFWATNQLIIAYART IITIIVVFYYLKWLKLKTAPLLIATILYGASTLVLYYNYTWSFYGDLLILLPLSLWGMER FFQKRRIGLFIFSVALTLFSNFYFSYYQAIVLGIYFILRVIFKYRRDIVSRWEKFYLLVI GAILALLSSILGFYTGVSSFLNNDRAQNDDFNITLFTDLTQSKYHIFSDGFYITVSIIAL MGLFTFKLYRHYYYKIFAIITWFLLIGSLSQYFDSAFNGFSLPQRRWVYFLSISTSILIA LYIQYLSELTLKQYLLVAIPVFIFGLYHYIFASAYVNWMIVPLFLIIVLTFVVWKKKWLY QPYILIAIVLLFFVQQIMMTHDSRARTIDPYATTTKTLTDSSYYNHKLAKKINNIKKQKD NKNPFHRIDYMSAYALNSPFIYHYNGISLYSSIFDGDILKYYDKEMQINMPVDKNSTYRY LGNRANLEAMWDVQDRFRHPNDLNMPYGFKKIDTINNGSDKLIHSENTINYPATHITNKI FNKHDLKSPLDREQAMLQGVVLDDDSIKANTSFTQNENLLSKAYQSTNNATWKDKTHLNV EKNNGGITLTLPKTLANQYKDMYVEMDVELLAPDIEHSIGVNEYVQNRNMLSYKYRRFVT PVTMRVKASDQLKIRLTKGHYRLSIKGIYGEDYHTLKQASKSLKPVTISQFRSGYTFTKP KGTSGYLVVPIAYANGMHARVNGHDVDVKQANGIMTAIPVKKNDTHIELSYTPPHFYILL ILSVIGIISSIIFSRYLKRKNQLK >gi|312979642|gb|ACRM01000023.1| GENE 82 92340 - 92624 128 94 aa, chain + ## HITS:1 COG:SA1605 KEGG:ns NR:ns ## COG: SA1605 COG3666 # Protein_GI_number: 15927361 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 40 94 101 155 259 87 70.0 5e-18 MYNDYNMIQLTLPMAISVLIPINDISRHINDIVETNTKTEFICPNNQRLGFKKYTYHHDK YGFKRDFKLYECDDDSECPLKHPCMNFNSKTNKK >gi|312979642|gb|ACRM01000023.1| GENE 83 93009 - 93359 575 116 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475063|ref|ZP_04059791.1| ribosomal protein L19 [Staphylococcus hominis SK119] # 1 116 1 116 116 226 100 8e-58 MSNHKLIEAVTKSQLRTDLPTFRTGDTLRVHVRIVEGSRERIQVFEGVVIKRRGGGISET FTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR >gi|312979642|gb|ACRM01000023.1| GENE 84 93464 - 94204 912 246 aa, chain - ## HITS:1 COG:SA1083 KEGG:ns NR:ns ## COG: SA1083 COG0336 # Protein_GI_number: 15926823 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA-(guanine-N1)-methyltransferase # Organism: Staphylococcus aureus N315 # 2 244 1 243 245 423 84.0 1e-118 MMKIDYLTLFPEMFDGVLNHSILKRAQDKNIIEVNTVNFRDYAENKHNQVDDYPYGGGQG MVLKPEPVFNAMKDLKHTDKTRVILMCPQGRPFSQAIAEELSEAEHIVFICGHYEGYDER IRENLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNEQSHQDDSFSDGLLEFPQY TRPREYKGMTVPDVLLSGNHANIEKWRHEQKLIRTLHKRPDLLEKYQLSDKDKEFLESYK NQLKNN >gi|312979642|gb|ACRM01000023.1| GENE 85 94201 - 94701 582 166 aa, chain - ## HITS:1 COG:SA1082 KEGG:ns NR:ns ## COG: SA1082 COG0806 # Protein_GI_number: 15926822 # Func_class: J Translation, ribosomal structure and biogenesis # Function: RimM protein, required for 16S rRNA processing # Organism: Staphylococcus aureus N315 # 1 166 1 167 167 241 77.0 4e-64 MQVEVGQIVNTHGIKGEVKVKSNSDFTDTRFQPGEVLIVNHHHNEIEMTITSYRIHKGFH MLKFEGINHINDVEQYKGDYLFQERDHEDIELNENEFYYSDIIGCTVFNNDTPIGRVINI FETGANDVWVVKGDKEYLIPYIADVVKEVDVEHKTIRITSMEGLLE >gi|312979642|gb|ACRM01000023.1| GENE 86 94833 - 95108 462 91 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475027|ref|ZP_04059755.1| ribosomal protein S16 [Staphylococcus hominis SK119] # 1 91 1 91 91 182 100 1e-44 MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQIGTYNPASVNAPEVKIDEELALKW LKDGAKPTDTVHNILSKQGILKTFDEQKRSK >gi|312979642|gb|ACRM01000023.1| GENE 87 95370 - 96740 1806 456 aa, chain - ## HITS:1 COG:SA1080 KEGG:ns NR:ns ## COG: SA1080 COG0541 # Protein_GI_number: 15926820 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal recognition particle GTPase # Organism: Staphylococcus aureus N315 # 1 456 1 455 455 721 91.0 0 MAFEGLSDRLQATMQKIRGKGKVTEADIKTMMREVRLALLEADVNFKVVKDFVKTVSERA LGSDVMQSLTPGQQVIKIVQDELTQLMGGENTSIKMANKPPTVVMMVGLQGAGKTTTAGK LALLMRKKYNKKPMLVAADIYRPAAINQLQTVGKQLDVPVYSEGDQVKPQQIVDNALRYA KEEHLDFVIIDTAGRLHIDETLMNELADVKEISKPDEIMLVVDAMTGQDAVNVAQSFDEQ LDVTGVTLTKLDGDTRGGAALSIRAVTHKPIKFVGMSEKMDGLELFHPERMASRILGMGD VLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKM KGLDKLNMSDKQIDHIKAIIQSMTPNERQDPAILNVSRKKRIAKGSGRSLQEVNRLMKQF NDMKKMMKQFTGNGRKGKKGKRSQMENMLKGMNLPF >gi|312979642|gb|ACRM01000023.1| GENE 88 96761 - 97093 365 110 aa, chain - ## HITS:1 COG:SA1079 KEGG:ns NR:ns ## COG: SA1079 COG2739 # Protein_GI_number: 15926819 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 110 1 110 110 131 76.0 3e-31 MGKNDLVKTLRMNYLFDFYHSLLTEKQKNYLELFYLNDYSLSEIAETFKVSRQAVYDNIR RTGDLVEDYETKLKLYEKFEQRQMIYNEMKQSIHDTKKLKHLIQKLEELE >gi|312979642|gb|ACRM01000023.1| GENE 89 97080 - 98309 1039 409 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163762490|ref|ZP_02169555.1| ribosomal protein L28 [Bacillus selenitireducens MLS10] # 81 393 21 333 336 404 63 1e-111 MSFFKRLKDKFSTKSTEDIEKELTEDEKLDQPSTKDNEQENEEPAPKKKKPRKLSEADFD EDGLISIEDFEEIEAQKMGAKFKAGLEKSRENFQEQLNNLIARYRTVDEDFFEALEEMLI TADVGFNTVMQLTDELRTEAQRRNIKETEGLREVIVEKIVEIYHQEDDHSEAMNIEDGRL NVILMVGVNGVGKTTTIGKLAHRYKMEGKKVMLAAGDTFRAGAIEQLQVWGDRVGVEVIR QSEGSDPAAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVISRAVPDAPH EALLCLDATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGL GEKLDDLQPFNPESYVYGLFADMIEQNDNIPDEMQSLTDNNEEHQNGEK >gi|312979642|gb|ACRM01000023.1| GENE 90 98306 - 101866 3981 1186 aa, chain - ## HITS:1 COG:SA1077 KEGG:ns NR:ns ## COG: SA1077 COG1196 # Protein_GI_number: 15926817 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Chromosome segregation ATPases # Organism: Staphylococcus aureus N315 # 1 1184 4 1187 1188 1306 66.0 0 MKSIDTIGFKSFADRTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGSKME DIIFSGAEHRQAQNYAEVQLKLDNSTRELQIEADDVIVTRRLYRSGESEYYLNNDRARLR DITELFLDSGLGKEAFSIISQGRVDEILNAKPVDRRQIIEESAGVLKYKKRKTESLQKLG HTEDNLSRVEDILYDLEGRVEPLKAEASIAKEYLQLSKEMEHSDVVVTVHDINQYDEENR QLDERLNHLKSQQAEKEGQQAQLNQYLQKQKTQRQKLERDTDHVNIDLITTTEEYEKFIG KLNVLEERKRNQSETNARFEEELDNLQYELKNVQDERELSLEQVSKLKKQHQSLNKEIKQ LESKLNLTDAQHDEKLETIKNEYYELMSEQSEVNNDIRFLERTIQENETKKTRLDARLIE VFDQLKHIQKDIHQTEQAHTTTSQKMNVTEKDMRDVEYRLSEAKRIEATYEDKLYQAYRY TDKMRVRMESLETQAEDYSYFFNGVKHILKAKENTLSGIHGAVAEVIKVPSKLTQAIETA LGASLQHIIVNNEKDGRQAIKFLKQRGLGRATFLPLNVIRARSLSHHIQNVARNFDGFIN IASEAVEVNQTYQAVIDNLMGTTIIVENLKIANELARAIQYKARIVTLEGDIVNPGGSMS GGGMRQSKSILAQKDELTTMKTQLNDYEEKTKEFEQQLQNQKEEVETLSNKYVDLSQQYH QLKATAHEETLTLDRLKKQETHIKSEHEEFEFEKNDGYQSEKSRHTLKQQQLRLSEIQEQ LKQLEKDIEVYSKLSKEGKENVSQVEKELNQKRSDVAVVKEKISHQTMSLERIDKQHAQI NQQIIATKEKIELFNSDDMMGEKAFQQLQSSIQDKASQRDTLKQKLDALKEQKESINEDI EIHEYKLEQCHQDLLSIESFYQDIKAQQSKLDVLINHAMNHLNETYHLTLERARETYQSD VPIETLRKKVKLTKMSIEELGSVNVNAIEQFEELNERYTFLNEQRNDLREAKQTLEQIID EMDQEVKDRFKATFFEVQDYFTSVFQSLFGGGHAKLELTDDDYLSAGVDIIVQPPGKKLQ HLSLLSGGERALSAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAQFLNDLSEKTQF IVITHRKGTMEYSDRLYGVTMQESGVSKLVSVNLNTIDEVMKEENA >gi|312979642|gb|ACRM01000023.1| GENE 91 101945 - 102697 812 250 aa, chain - ## HITS:1 COG:SA1076 KEGG:ns NR:ns ## COG: SA1076 COG0571 # Protein_GI_number: 15926816 # Func_class: K Transcription # Function: dsRNA-specific ribonuclease # Organism: Staphylococcus aureus N315 # 11 246 5 240 243 390 81.0 1e-108 MNGGLSIMHPKQSEMIKDFQYQFDKKMKMLGLSYTHVDVYQQAFSHSSFINDFNMDRLAH NERLEFLGDAVLELTVSRYLFDKYPNLPEGNLTKMRATIVCEPSLVIFANKIELNQLILL GKGEEKTGGRTRPSLVSDAFEAFIGALYLDQGLEVVWKFAQKVIFPYVEHNELIGVVDFK TQFQEYIHSQSKGDVTYHLIKEEGPAHHRLFTSEVILENKAIAKGQGRTKKESEQKAAES AYHKLRDENK >gi|312979642|gb|ACRM01000023.1| GENE 92 102758 - 102991 410 77 aa, chain - ## HITS:1 COG:SA1075 KEGG:ns NR:ns ## COG: SA1075 COG0236 # Protein_GI_number: 15926815 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 99 98.0 1e-21 MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAE KINTVGDAVKYINSLEK >gi|312979642|gb|ACRM01000023.1| GENE 93 103120 - 103854 1051 244 aa, chain - ## HITS:1 COG:SA1074 KEGG:ns NR:ns ## COG: SA1074 COG1028 # Protein_GI_number: 15926814 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism; R General function prediction only # Function: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 244 3 246 246 381 85.0 1e-106 MTKSALVTGASRGIGRSIALQLAEDGFNVAVNYAGNKEKAEAVVKEIKEKGVESFAIQAN VAEGDQVKAMIKEVVNQFGSLDVLVNNAGITKDNLLMRMKEQEWDDVINTNLKGTFNCIQ KATPQMLRQRSGAIINLSSIVAAMGNPGQANYVATKAGIEGLTKSSARELASRGITVNAV APGFIVSDMTNALNEDLKSQMLEQIPLSRFGEDKDIAYAVSFLASNRAKYITGQTLSVNG GMYM >gi|312979642|gb|ACRM01000023.1| GENE 94 103847 - 104773 1285 308 aa, chain - ## HITS:1 COG:SA1073 KEGG:ns NR:ns ## COG: SA1073 COG0331 # Protein_GI_number: 15926813 # Func_class: I Lipid transport and metabolism # Function: (acyl-carrier-protein) S-malonyltransferase # Organism: Staphylococcus aureus N315 # 1 308 1 308 308 492 79.0 1e-139 MSKTAIVFPGQGAQKVGMAKDLYHVNKDATSVLESAQTTVDFDLLETMFTDKEKKLGETE NTQPALLTHSIALLEALNRIDADYTMGHSLGEYSSLVAAGVLKFEDAVKIVRKRGELMTQ AFPNGVGSMAAVLGLSYEEVDEICKEISFGDQLIEPANINAPGQIVVSGHKALIDKLTKE GKILGAKRVIPLAVSGPFHSSMMQVIEEDFASFIDQFTWNDAQFPIVQNYNAHGETKAET IKQNMVKQLYSPVQFIKSTEWLIDQGVDHFIEIGPGKVLSGLIKKINRDVKITSIQTLED VKGWNEND >gi|312979642|gb|ACRM01000023.1| GENE 95 104766 - 105524 871 252 aa, chain - ## HITS:1 COG:SA1072 KEGG:ns NR:ns ## COG: SA1072 COG0416 # Protein_GI_number: 15926812 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 252 77 328 328 399 84.0 1e-111 MVRMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTIDGKGFVFLD VGANADAKPEHLLQYAQLGNIYAQKIRGIQQPKISLLNIGTEPAKGNALTKKTYQLLKDE ASLRFNGNIEAKTLMEGDTDVVVTDGYTGNMVLKNIEGTAKSIGKMLKGTLLANLKNKLA AAILKKDISKFAKKLDYAEYGGSVLLGLDGTVVKAHGGSNARAFYSAIRQAKIAGDEQIV KIMRETVGGDNE >gi|312979642|gb|ACRM01000023.1| GENE 96 105449 - 105751 178 100 aa, chain - ## HITS:1 COG:SA1072 KEGG:ns NR:ns ## COG: SA1072 COG0416 # Protein_GI_number: 15926812 # Func_class: I Lipid transport and metabolism # Function: Fatty acid/phospholipid biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 75 1 75 328 139 84.0 1e-33 MVKIAVDMMGGDNAPDIVLEAVEKAINDFKDLEIILFGDEKQYTLNHKRIEFRHCSEKIE MEDEPVRAIKRKKTAQWYAWQKRLNLVRQMVVYLLVIQVL >gi|312979642|gb|ACRM01000023.1| GENE 97 105744 - 106313 589 189 aa, chain - ## HITS:1 COG:SA1071 KEGG:ns NR:ns ## COG: SA1071 COG2050 # Protein_GI_number: 15926811 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Staphylococcus aureus N315 # 1 181 1 181 185 224 67.0 1e-58 MKLKKTERRHKIKKAINENPFITDSELCELFNVSIQTIRLDRTQLNIPELRKRIKSVAKQ NYEYIKGLEANEVIGDLIQVKPNYSAQSIIEITEEYVFQKTRIARGHILFAQANSLCVAL IHNSTVLTQESNLKFIEKVKLHDNVRAEATVINRTNRHYDIKVESFVKDTLVFTGIFKMF YISEDENHG >gi|312979642|gb|ACRM01000023.1| GENE 98 106452 - 108503 2148 683 aa, chain - ## HITS:1 COG:SA1070 KEGG:ns NR:ns ## COG: SA1070 COG1200 # Protein_GI_number: 15926810 # Func_class: L Replication, recombination and repair; K Transcription # Function: RecG-like helicase # Organism: Staphylococcus aureus N315 # 1 683 1 686 686 1170 84.0 0 MSKVSLIESPYPLQSIKGLGPKRIALLHELNIHTIEDLVLYLPTRYEDNTVVDLNLAEDQ STVTVAGEIYSVPTVAFFGRNKSKLTVHLMIDNIAVKCVFFNQPYLKKKIELNQTVTIKG KWNRAKQEINGNRIFFNDTHTSTEEVRLEPVYRLKEGIKQKQMRDMIHQSLNDVTIHEWI TEELRQRYKLELLDYTIKTLHLPKDKQALMRARRTYAFTELFMFELRMQWLNRLEKASDE AIEINYDINKVKSFIQSLPFELTDAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAA ICMYALKTAGYQSALMVPTEILAEQHANSLTELFGDHMNVALLTGSVKGKKRRVLLEQLE NGTIDCLIGTHALIQDDVQFKNVGLVITDEQHRFGVNQRQLLREKGAMTNVLFMTATPIP RTLAISVFGEMDVSSIKQLPKGRKPIITHWAKHEQYDQVLAQMTSELKKGRQAYVICPLI ESSEHLEDVQNVVELFESLQEFYGKTHVGLLHGKMSADEKDDVMARFSNHDIDILVSTTV VEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPKTETGIERMTIM TQTTDGFELSEYDLEMRGPGDFFGVKQSGLPDFMVANIVEDYRMLEVARDEAAELIQSGE FFTEKYERLRAFINDHLLNMSFD >gi|312979642|gb|ACRM01000023.1| GENE 99 108895 - 109077 68 60 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475008|ref|ZP_04059736.1| ## NR: gi|228475008|ref|ZP_04059736.1| hypothetical protein STAHO0001_1000 [Staphylococcus hominis SK119] # 12 60 1 49 49 88 100.0 1e-16 MRFNSGSDNDEMIIVVTPHFIFNKSIEKYDTGKLTLIGFSRHNDQSIYIKIEKYAINNEL >gi|312979642|gb|ACRM01000023.1| GENE 100 109079 - 110737 2076 552 aa, chain - ## HITS:1 COG:SA1069 KEGG:ns NR:ns ## COG: SA1069 COG1461 # Protein_GI_number: 15926809 # Func_class: R General function prediction only # Function: Predicted kinase related to dihydroxyacetone kinase # Organism: Staphylococcus aureus N315 # 1 552 1 548 548 810 77.0 0 MISKINGKLFADMIIQGAHNLSNNADLVDSLNVYPVPDGDTGTNMNLTITSGREEVENNL SQSIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIEDEKEINAQQFASSFQAGVDTA YKAVMKPVEGTILTVAKDAASAAMTKAEETDDCIEVMEYTIEKAEQSLNNTPNLLAVLKE VGVVDSGGKGLLCVYEGFLKGLKGEKVEANKQKLDTEDLVHEEHDFHGVINTEDIKYGYC TEMMVRFGKDKKEFNEQTFRNDMSEFGDSLLVINDDEIVKVHVHTETPGEVFNYGQQYGE LIKLKVENMREQHREVIRKEQSHQQATASQQPKTVETAVIAISMGEGISELFTSMGVTHI ISGGQTMNPSTEDIVKVIEQSECQRAIILPNNKNIRMSSDQAAQLVKADTVVIPTTSIPQ GIAALFQYDVASTLEENASHMNTALETVKSGSITFAVRDTKIDGVDIKKDEFMGLAESKI VTSNADEFKTITGLLSTLLNEESEILTVITGEDAQSDMTTQLEEWVENEYPDVEIEIHKG DQPIYPYLFAVE >gi|312979642|gb|ACRM01000023.1| GENE 101 110752 - 111126 608 124 aa, chain - ## HITS:1 COG:SA1068 KEGG:ns NR:ns ## COG: SA1068 COG1302 # Protein_GI_number: 15926808 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 123 1 123 124 170 88.0 5e-43 MTLEILNDYGKIDISNEVIASVVGSKAVESYGIVGMASRQQVRDGIAEILGHENYAKGIV VKEDNGVIDIDMYIIVSYGVKISEVANNVQSSVKYTLESSLNIKVNSINIFVQGVRLNNK GKKV >gi|312979642|gb|ACRM01000023.1| GENE 102 111396 - 111584 319 62 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228474967|ref|ZP_04059695.1| ribosomal protein L28 [Staphylococcus hominis SK119] # 1 62 1 62 62 127 100 4e-28 MGKQCYVTGRKATTGNNRSHALNANKRRFNANLQKVRILVDGKPKKVWVSARALKSGKVT RV >gi|312979642|gb|ACRM01000023.1| GENE 103 111636 - 112277 816 213 aa, chain - ## HITS:1 COG:SA1066 KEGG:ns NR:ns ## COG: SA1066 COG1564 # Protein_GI_number: 15926806 # Func_class: H Coenzyme transport and metabolism # Function: Thiamine pyrophosphokinase # Organism: Staphylococcus aureus N315 # 1 212 1 212 213 236 56.0 3e-62 MKINLLCGDRHLPPHIFSKLSTESWGGIDRGTLILSEQSIVPVFSVGDFDSVNDEEREIL KKTLNIHPVKAEKDDTDLALGVEQAIQKGYTEIDIYGATGGRLDHFMGTLQILFKSVYIK KEIIIKVIDKQNEIMLLNTGTHQLHKSDKYQYVSFIPVNGEVIVSLSGFKYNLDHQHLEI GSTLTISNEVDQSIAIIEVEKGQVLQMRSKDLE >gi|312979642|gb|ACRM01000023.1| GENE 104 112282 - 112926 463 214 aa, chain - ## HITS:1 COG:SA1065 KEGG:ns NR:ns ## COG: SA1065 COG0036 # Protein_GI_number: 15926805 # Func_class: G Carbohydrate transport and metabolism # Function: Pentose-5-phosphate-3-epimerase # Organism: Staphylococcus aureus N315 # 1 214 1 214 214 320 71.0 2e-87 MRHIFPSLLSVDFLNLKQEIQLLEEAGVDGLHFDVMDGQFVPNISIGLPILDAVRSTTQL PIDVHLMIENPENYIETFAKHGADMISVHIESTPHIHRAIQLIKSLDKKAGVVINPGTPV DRVVPVLSMVDYVLVMTVNPGFGGQTFIDMCASKIKLLNDLKSSFNLNFDIEVDGGINDK TIDICAKHGANLFVTGSYFFNQDDYKTVTKILRG >gi|312979642|gb|ACRM01000023.1| GENE 105 112926 - 113801 736 291 aa, chain - ## HITS:1 COG:SA1064 KEGG:ns NR:ns ## COG: SA1064 COG1162 # Protein_GI_number: 15926804 # Func_class: R General function prediction only # Function: Predicted GTPases # Organism: Staphylococcus aureus N315 # 1 291 1 291 291 441 75.0 1e-124 METGRIVKLISGVYQVDVGGKKYNTKPRGLFRKKKFSPVVGDIVDFDIQNEDEGYIHHVH ERHNALKRPPVSNIDGLVIVMSAVEPNFSTQLLDRFLVIAHSYNLSPSILVTKKDIASET QISHIETLLNTYKEIGYSVQFVGKETDKVDIVNTWPNGLIVLSGQSGVGKSTFINTFKPE LNLETNDISKSLNRGKHTTRHVELFERENGFIADTPGFSALDFDHIEKDDVKYYFKEINA FGNDCKFRNCNHIKEPKCNVKHQLENNNLAQFRYEHYLQLVNEISNRKVRY >gi|312979642|gb|ACRM01000023.1| GENE 106 114099 - 116123 2310 674 aa, chain - ## HITS:1 COG:SA1063_1 KEGG:ns NR:ns ## COG: SA1063_1 COG0515 # Protein_GI_number: 15926803 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Staphylococcus aureus N315 # 1 439 1 444 444 495 60.0 1e-139 MNGKLINDRYQLLDKLGGGGMSMVYLAEDTILERKVAIKAISIPQSEKDETMKRFYREVN SATQIVHENIVEVYDVEEDDDNFYLIMEYIDGPTLSEYIHSHGPLNIETAIDFIKQILNG VKQAHEQRIIHRDIKPQNVLINKDKILKIFDFGIAKALSETSMTQTNHVLGTVQYLSPEQ AKGDKTNETTDIYSIGIVLYEMLVGEPPFSGETAVSIAIKHIQETVPNITEKYPNIPQSL SNVVLKATEKNPKDRYQTIEEMYNDLSSVLVTSRLNEEKHTRISDTTQTVPIDKKEIKNK LEEETHKKDIAQTMQIPIINHHKFQASENNVYTPKRKKRSKKKKFAIIFILALLLLSLIG FIAWGMLSDKYTEMPDLTGKTEKEAEKVLKASHLEIGHISREYNDDYPENKIINSNPKAG ERVNQQEKVDVVLSKGPEKINMPNVIGIKKEEAIKKLKDHKLNHVTINQEYNSQMPKGYI FKQNINPNESVKLNDHHIVLTESLGVKKVYVKDYENKNYQNAKKELESMGLNVQVKTTNS DTKDKDIIISQSPKQTEVNEGSTVEFMVSKGKDKKEGSKKDSDSSDDKKDNHTTSVKNYT ETYHIPYTGNDGESQKVKIYIRDKNNSGTQVSQTYNIHKDKIITIPLKIEQGDSAGYTIE VDDNVIADKDIDYE >gi|312979642|gb|ACRM01000023.1| GENE 107 116120 - 116863 986 247 aa, chain - ## HITS:1 COG:SA1062 KEGG:ns NR:ns ## COG: SA1062 COG0631 # Protein_GI_number: 15926802 # Func_class: T Signal transduction mechanisms # Function: Serine/threonine protein phosphatase # Organism: Staphylococcus aureus N315 # 1 247 1 247 247 352 69.0 4e-97 MLNAQFFTDTGQHREKNEDAGGIFYNQTHQQLLVLCDGMGGHKAGEVASQFVTNQLQDYF EKENFIELDRAESWLSQTLKDINLELFEYATTNEEYRGMGTTCVCALIFDNKIVVANIGD SRAYVINSREIEQITYDHSFVNHLLMTGQITEEEAFNHPQRNIITKVMGTDRRVSPDIFT KRISYYNYILLNSDGLSDYVRNHEIETLMNQSTSLNELGEALIQAALDHQSKDNVSVLLA EIEGNNV >gi|312979642|gb|ACRM01000023.1| GENE 108 116869 - 117963 1310 364 aa, chain - ## HITS:1 COG:SA1061 KEGG:ns NR:ns ## COG: SA1061 COG0820 # Protein_GI_number: 15926801 # Func_class: R General function prediction only # Function: Predicted Fe-S-cluster redox enzyme # Organism: Staphylococcus aureus N315 # 1 364 1 364 364 675 94.0 0 MITAEKKKKNKFLPNFEKQSIYSLRYDEMQNWLVEHGQQKFRAKQIFEWLYQKRVDTIDE MTNLSKDLRQLLKDNFVMTTLTTVVKQESKDGTIKFLFELQDGYTIETVLMRHDYGNSVC VTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDATNERVSQIVIMGIGEPF ENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEQIQINFAVSLHAAKDEI RSKLMPINRAYNVGKLMEAIKYYQEKTNRRITFEYGLFGGVNDQLEHARDLAHLIKDLNC HVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGINATIRREQGSDIDAACGQLRAKERQ VETR >gi|312979642|gb|ACRM01000023.1| GENE 109 117965 - 119272 1156 435 aa, chain - ## HITS:1 COG:SA1060 KEGG:ns NR:ns ## COG: SA1060 COG0144 # Protein_GI_number: 15926800 # Func_class: J Translation, ribosomal structure and biogenesis # Function: tRNA and rRNA cytosine-C5-methylases # Organism: Staphylococcus aureus N315 # 1 435 27 461 461 620 67.0 1e-177 MTQSVRDLAFQSIQDILNDNAYSNLKINEVINQYNIATVDKALFTELVYGTIKRKMTLDF YLKPFVKTRIKGWVRQLLWMSLYQYVFLDKIPNHAIINEAVNIAKRRGGQHNGNIVNAIL RHIFKSDLPTLETIKNEKQRMTIEYSIPRWIIEHWITHYGIETTHKIAKSFLVQSASTVR VNTSRTDVETISKALLQEGYHVDIDQLIPYCLHLTGKPVIESRAFKDGLISIQDKSSMLV GYLMDVQKDDTILDACSAPGGKACHMAELLASTGHVDATDIHKHKIGLIKENIKKLKLKN VSTFDHDATKPYSELYDKILVDAPCSGLGVLKHKPEIKYVQSKDSINDLVEIQLSILDNV KHNLKPGGSLIYSTCTIEQMENENVIYTFLKENKDFEFELITHPITGEKVKTLQILPQDF NSDGFFITKIKRKES >gi|312979642|gb|ACRM01000023.1| GENE 110 119269 - 120207 1170 312 aa, chain - ## HITS:1 COG:SA1059 KEGG:ns NR:ns ## COG: SA1059 COG0223 # Protein_GI_number: 15926799 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA formyltransferase # Organism: Staphylococcus aureus N315 # 3 312 1 311 311 460 76.0 1e-129 MTMSKIIFMGTPDFSTKVLEMLIAEHEVIAVVTQPDRPVGRKRVLTPPPVKKVAETYHIP VYQPEKLKDSNELNELMDLNPDLIVTAAFGQLLPESLLKLPKLGAVNVHASLLPKYRGGA PIHQAIIDGEVQTGITIMYMVKKLDAGNIISQKAIDIEDDDNVGSMHDKLSFLGADLLKE TLPFIIDGSNESIPQDDSKATFASNISREDERIDWTKSAKEIHNHIRGLSPWPVAYTTMN NKNLKLYQAHIEKGKNGEPGEIIEITKTAIIVGTGSLDAIALTDIQLSGKKRMLAAQYLS GVQDSLVGTKLV >gi|312979642|gb|ACRM01000023.1| GENE 111 120194 - 120682 542 162 aa, chain - ## HITS:1 COG:SA1058 KEGG:ns NR:ns ## COG: SA1058 COG0242 # Protein_GI_number: 15926798 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Staphylococcus aureus N315 # 1 162 1 162 162 210 67.0 1e-54 MAIKKLVPSTHPVLFKKAKKITTFDENLKRLLLDIEDTLYSEEASALSAPQIGVSQRVAM IDMEAEGLLQLINPKIKTESNEKIIDLEGSVNLPNVFGEVERSKMITVEANDLEGHEIEL TAYDDVARMILHIIDQLDGIPFTERAIKILTEKEVEAYFDNE >gi|312979642|gb|ACRM01000023.1| GENE 112 120858 - 121061 329 67 aa, chain + ## HITS:1 COG:SA1057 KEGG:ns NR:ns ## COG: SA1057 COG2314 # Protein_GI_number: 15926797 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 67 1 67 67 101 74.0 3e-22 MEVNKVIYIILAVFLGGFGVHKFYAGKMMSGLLHLLFCWTGIPHIIAIISAILTLLRPAD ENGNVTM >gi|312979642|gb|ACRM01000023.1| GENE 113 121121 - 123529 2773 802 aa, chain - ## HITS:1 COG:SA1055 KEGG:ns NR:ns ## COG: SA1055 COG1198 # Protein_GI_number: 15926795 # Func_class: L Replication, recombination and repair # Function: Primosomal protein N' (replication factor Y) - superfamily II helicase # Organism: Staphylococcus aureus N315 # 1 802 1 802 802 1254 75.0 0 MIAKVIVDIPSKSVDFKFDYLIPDHLKDFIKVGVRVVVPFGPRTIQGYVMDIQQQPSEDV NIDRLKAIKEIRDIRPELTSELIQLSEWLSHYHISKRISVLEAMLPSAIKAKYTKVFKIV RHNDIEDDILKYFDNNGYYKYKDAQKNNHLNLLNRLLEQHLIEEETILSQHTKRKTQRAV RVVEGYNPDDILALLEKKLKQYDVYAYLLEEHHRNVFLKELEDMGFSKSSIDGLVKKGFL EKYDAEIERDPFANRIFEKEEKRTLTSAQNDAFQQIKEKIDHNAQRTFLLHGVTGSGKTE VYLQAIEEVLKKDKQAMMLVPEIALTPQMVLRFKRRFGDDVAVLHSGLSNGERYDEWQKI RDGRARVSVGARSSIFAPFKNLGIIIIDEEHESTYKQEDYPRYHARDIAEWRSQFHQCPL ILGSATPSLESYARAEKNVYQLLTLPERVNQQALPSIDIIDMRAELSSGNRSMFSEELRQ AIQDRLNKNEQIVLFLNRRGYASFMLCRDCGYVPQCPHCDISLTYHKTTDQLKCHYCGYQ DLPPNLCPNCESPHIRQVGTGTQRVEEILQQEFEEARIIRMDVDTTSRKGAHEKLLTDFE NGKGDILLGTQMIAKGLDYPNITLVGVLNADTMLNLPDFRASERTYQLLTQVSGRAGRHE KTGKVIIQTYNSTHYAIEDVQKNDYLTFYHKEMQFRKLGKYPPYYYLINFTIAHKNMKKV MEAAKHVHQILLQHLSERALVLGPSPAAIARINNEHRFQILVKYKREPELIHALQYLDDY YHEAYIKDKLSLKIDINPQILM >gi|312979642|gb|ACRM01000023.1| GENE 114 123529 - 124737 1165 402 aa, chain - ## HITS:1 COG:SA1054 KEGG:ns NR:ns ## COG: SA1054 COG0452 # Protein_GI_number: 15926794 # Func_class: H Coenzyme transport and metabolism # Function: Phosphopantothenoylcysteine synthetase/decarboxylase # Organism: Staphylococcus aureus N315 # 1 402 1 399 399 647 81.0 0 MKNILLVVTGGIAAYKAIDLTSKLTQANYDVRVMLTNHAQEFVTPLAFQAISRNPVYTNT FIEENPEEIQHVALGDWADCIVVAPATANTIAKLSVGIADDIVTSTLLATEIPKFIAPAM NVHMYENKRTQHNISVLKDDGYRFIEPGDGFLACGYIAKGRMEEPLQIVKIINDYFKNKN KLSHRSHTSFEGKHALVTAGPTIEVIDPVRFVSNRSSGKMGYAIAEALAKRGAKVTLVAG PTQLDNPENVEVIHVESAEEMFNAVISRYEEQDIVVKAAAVSDYTPADVLNHKMKKQDGN LSVTFKRTKDILKYLGEHKTHQYLVGFAAETQNINAYAQDKLKRKNADVIISNNVGDQTI GFQSDDNELTMHFKDGQRINIKKGKKVQLAQQILDELETRWQ >gi|312979642|gb|ACRM01000023.1| GENE 115 124995 - 125207 372 70 aa, chain - ## HITS:1 COG:SA1053 KEGG:ns NR:ns ## COG: SA1053 COG1758 # Protein_GI_number: 15926793 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, subunit K/omega # Organism: Staphylococcus aureus N315 # 1 68 1 68 72 93 76.0 8e-20 MLNPPLNQLQSQINSKYLIATTAAKRARELDEKPETALLNGYHSAKPVGEALEEIASGKI SPVVPEEFQA >gi|312979642|gb|ACRM01000023.1| GENE 116 125207 - 125830 807 207 aa, chain - ## HITS:1 COG:SA1052 KEGG:ns NR:ns ## COG: SA1052 COG0194 # Protein_GI_number: 15926792 # Func_class: F Nucleotide transport and metabolism # Function: Guanylate kinase # Organism: Staphylococcus aureus N315 # 1 207 1 207 207 350 90.0 9e-97 MDNEKGLLIVLSGPSGVGKGTVRKEIFDDPTTSYKYSISMTTRQMREGEVNGVDYFFKTK EEFEALIQEDQFIEYAEYVGNYYGTPVQYVKDTMAEGHDVFLEIEVEGAKQVRKKFPDAL FIFLAPPSLDHLKERLIGRGTETDEKIQSRVNEARKEVEMMNLYDYVVVNDEVHLAKERI QSIVEAEHLKRERVEAIYRKMLLEAKK >gi|312979642|gb|ACRM01000023.1| GENE 117 125990 - 127693 1539 567 aa, chain + ## HITS:1 COG:SA1051 KEGG:ns NR:ns ## COG: SA1051 COG1293 # Protein_GI_number: 15926791 # Func_class: K Transcription # Function: Predicted RNA-binding protein homologous to eukaryotic snRNP # Organism: Staphylococcus aureus N315 # 1 564 1 564 565 874 79.0 0 MAYDGLFTKKIIESLQFLVTGRIHKINQPENDTIIMIIRQNRKNHHLLLSIHPNFSRMHL TNKKYDNPFDPPMFARVFRKHLEGGIVKSIRQIGNDRRVEIDIESKDEIGDTIYRTVILE TMGKHSNLILVDDQYKIIEGFKHLTPNTNQYRTVMPGFKYEAPPTQNKRNPYDISSDEVL KFVDFNAGKIAKQLLNAFEGFSPLITNEITNRYPFMNQDTLPQAFEEVIDQTLKVPVPVF HKNHETGKEDFYFMKLKQFSGDIVIYDSLHDLLDRYYDARGERERVKQRANDLVRFVQQQ LQKYQHKLSKLIDEYESAKDKDTQQLYGELITANIYRIQQGDASINVLNYYTNEEITIPL DPTKSPSVNAQYYYKQYNRMKTREKELDLQIALTRENIDYFANIEQQLEHITVDEIDDIR DELAELGFMKQRKNTKKKKQDKIHLQTYISSDGDTILVGKNNKQNDYLTNRKAQKSHLWF HTKDIPGSHVVILNDAPSETTIKEAAMLAGYFSKAGNSGQIPVDYTEIKNVHKPSGAKPG FVTYDNQKTLYATPDYDQIQHMKQDKN >gi|312979642|gb|ACRM01000023.1| GENE 118 127755 - 128159 422 134 aa, chain - ## HITS:1 COG:SA1050 KEGG:ns NR:ns ## COG: SA1050 COG3865 # Protein_GI_number: 15926790 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 133 1 133 133 219 82.0 1e-57 MEIPKVTPFLMFNNQAEEAVNLYTSLFKNSEILTMVKYGEDGPGEPGTVQHSIFTLNGQV FMAIDADNGEELPMNPSISLYVTVEDVMEMERLFNGLKKEGAILMPKTPMPPFREFAWVQ DKFGVSFQLALPEK >gi|312979642|gb|ACRM01000023.1| GENE 119 128323 - 128403 162 26 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHYILPLLAMVIVLLIGWVLIKIFIR >gi|312979642|gb|ACRM01000023.1| GENE 120 128479 - 128694 329 71 aa, chain - ## HITS:1 COG:no KEGG:SH1708 NR:ns ## KEGG: SH1708 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 71 1 75 76 61 52.0 8e-09 MAKDKDNNAFYNHLKHVNQFLYSEKEFKQTAHVLTIKESIKHMHHAQMESFEHTSDFFKK AKARLRQKDKI >gi|312979642|gb|ACRM01000023.1| GENE 121 128718 - 129326 892 202 aa, chain - ## HITS:1 COG:SA1048 KEGG:ns NR:ns ## COG: SA1048 COG0461 # Protein_GI_number: 15926788 # Func_class: F Nucleotide transport and metabolism # Function: Orotate phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 202 1 202 203 323 81.0 1e-88 MSKHIAKSLLDIEAVSLSPNDLFTWSSGIKSPIYCDNRITLGYPKVRQDIRDGLSELITE HFGNVEVISGTATAGIPHAAYISEKLNLPMNYVRSKSKNHGKQNQIEGAQSKNKKVVVVE DLISTGGSSITAVEALKEAGAEVVGVVAIFTYGLAKADDMFKQANLPFYTLSNYNELIEV AKEEGKISENDIQTLVDWRDNL >gi|312979642|gb|ACRM01000023.1| GENE 122 129328 - 130020 925 230 aa, chain - ## HITS:1 COG:SA1047 KEGG:ns NR:ns ## COG: SA1047 COG0284 # Protein_GI_number: 15926787 # Func_class: F Nucleotide transport and metabolism # Function: Orotidine-5'-phosphate decarboxylase # Organism: Staphylococcus aureus N315 # 1 229 1 229 230 357 79.0 1e-98 MRDLPIIALDFDSENHVLDFLDQFDEPLFVKVGMELYYQTGPALIKKIKERGHDIFLDLK LHDIPNTVQKAMEGLGKLNVDLVNVHAAGGTEMMKHAVKGLRKYNETTKIIAVTQLTSTT EEMLHQEQNIQTSIEEAVLNYAKLAQESGLDGVVCSPLEAKLLTKSLGSEFLKVTPGIRP KGAAVNDQKRITTPEDAKQLGSTHIVVGRPITQSEHPQESYTKIKESWLG >gi|312979642|gb|ACRM01000023.1| GENE 123 130121 - 133294 4187 1057 aa, chain - ## HITS:1 COG:SA1046 KEGG:ns NR:ns ## COG: SA1046 COG0458 # Protein_GI_number: 15926786 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase large subunit (split gene in MJ) # Organism: Staphylococcus aureus N315 # 1 1057 1 1057 1057 1946 91.0 0 MPKRDDIKTILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYRVILVNSNPATIMTDKEI ADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTGLNMAIQLHDSGVLKANNVELLGTKL ESIQQAEDRELFRSLMNDLDVPVPESDIVNTVEQAFAFKEQVGYPLIVRPAFTMGGTGGG ICHNDEELKEVVSNGLHYSPATQCLIEKSIAGYKEIEYEVMRDKNDNAIVVCNMENIDPV GIHTGDSVVVAPSQTLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPYSLNYYIIEVN PRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMLNPITGTSYAAFEPTLDYVISKIPRF PFDKFEKGERELGTQMKATGEVMAIGRTYEESLLKAIRSLEYGVHHLGLPNGENYDLDYI KERISHQDDERLFFIGEAIRRGTSLQEIHDMTKIDYFFLNKFLNIIHIEHELKAHPGDLE YLKYAKDYGFSDKVIAHRFDMTEEEVYQLRQDNDIKPVYKMVDTCAAEFESSTPYYYGTY ETENESVVTDKEKILVLGSGPIRIGQGVEFDYATVHAVWAIQNAGYEAIIVNNNPETVST DFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTAINLADKLAKHGVKILGTSLED LNRAEDRKEFETLLRKIDVPQPKGKTATSPKEALENAREIGYPVVVRPSYVLGGRAMEIV NSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAISDGETVIIPGIMEHIERAGVHS GDSIAVYPPQTLSDEEIKTLEDYTIKLAKGLNIVGLINIQFVIAHDGVYVLEVNPRASRT VPFLSKITDIQMAQLAMQAIMGTKLKDLGYQQGIQPYSEGVFVKAPVFSFNKLKNVDITL GPEMKSTGEVMGKDLTLEKALYKGLTGSGVEVKDHGTVLMTVSDKDKEEIVDIAHRLNEV GYKILATQGTAQKLEAHNIPVEVVGKIGGEDDLLTRIQNGDVQIVINTMTKGKEVERDGF QIRRTTVENGVPCLTSLDTASALTNVIESMTFSMRNM >gi|312979642|gb|ACRM01000023.1| GENE 124 133287 - 134393 1500 368 aa, chain - ## HITS:1 COG:SA1045 KEGG:ns NR:ns ## COG: SA1045 COG0505 # Protein_GI_number: 15926785 # Func_class: E Amino acid transport and metabolism; F Nucleotide transport and metabolism # Function: Carbamoylphosphate synthase small subunit # Organism: Staphylococcus aureus N315 # 1 368 1 366 366 614 80.0 1e-175 MFERRYLVFEDGSYYEGYKLGSDQLSIGEIVFNTAMTGYQETISDPSYTGQIVTFTYPLI GNYGINRDDFESLTPTLNGVVVKEASTHPSNFRKQKTLHEVLVQYHIPGISGVDTRSITR KIRKYGVLKAGFTDNKEEIESLAANLKTAELPRDEVTTVSTKTPYVSTGSDLSVVLLDFG KKQNIVRELNSRGCNVTVVPYDTSAEEILAMSPDGVMLSNGPGDPEEVDVALDMIKGVLG NIPFFGICLGHQLFALSQGAKAFKMKFGHRGANHPVKDLRTGKVDITSQNHGYAIDKDSL KNTDLEVTHIALNDGTVEGLRHKTLPAFSVQYHPEARPGPSDSNYLFDEFLDMMRDFKDN KKESKTNA >gi|312979642|gb|ACRM01000023.1| GENE 125 134395 - 135669 1597 424 aa, chain - ## HITS:1 COG:SA1044 KEGG:ns NR:ns ## COG: SA1044 COG0044 # Protein_GI_number: 15926784 # Func_class: F Nucleotide transport and metabolism # Function: Dihydroorotase and related cyclic amidohydrolases # Organism: Staphylococcus aureus N315 # 1 424 1 424 424 712 81.0 0 MKLIKNAKILDNGELKSTSILIDGQYIKEMNENINIDEGTEVIDANGQFVAPGLVDVHVH LREPGGEHKETIETGTKSAARGGFTTVCPMPNTRPVPDTVEHMDQLQSLIKENAQVRVLP YASITIRQAGKEHVDFEALAKEGAFAFTDDGVGVQESAMMYEAMQQAAKLNKAVVAHCED NSLIYGGAMHQGKRSEELGIPGIPNICESVQIARDVLLAEAANCHYHVCHVSTKESVRAI RDAKAAGIHVTAEVTPHHLLLTEDDVPGDNAIFKMNPPLRSKEDRDALLEGLLDGTIDCI ATDHAPHAKEEKAQPMTKAPFGIVGSETAFQLLYTHFVKKGDWSLQQLVDYLTIKPAQIF DLPYGKLEEGSYADLTIINLDEEREIRGEDFLSKADNTPFIGYKVYGNPVLTMVEGEVKF KEDK >gi|312979642|gb|ACRM01000023.1| GENE 126 135672 - 136565 1002 297 aa, chain - ## HITS:1 COG:SA1043 KEGG:ns NR:ns ## COG: SA1043 COG0540 # Protein_GI_number: 15926783 # Func_class: F Nucleotide transport and metabolism # Function: Aspartate carbamoyltransferase, catalytic chain # Organism: Staphylococcus aureus N315 # 1 292 1 292 293 459 76.0 1e-129 MEHLFSMEYLTNDDIFNLIQTASRFKSGKETVPQYEGKYVSNLFFENSTRTKCSFEVAEL NLGLKQVNFETSTSSVQKGESLYDTCKTLESIGVNLLVIRHPQNAYYEELENLNIPIANA GDGSGQHPTQSLLDIMTIYEEYETFEGLNILICGDIKNSRVARSNYTSLTSLGAKVMFSS PNEWVDETLDAPYVNIDDVINKVDIIMLLRVQHERHGITDEANFKADHYHEQYGLTKERY RRLKEDAIVMHPAPVNRGVEIDSELVEAPKSRIFKQMENGMYLRMAVIDKLLSRKGE >gi|312979642|gb|ACRM01000023.1| GENE 127 136591 - 137904 1065 437 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|168182407|ref|ZP_02617071.1| 50S ribosomal protein L18 [Clostridium botulinum Bf] # 11 435 1 428 447 414 50 1e-114 MENEQMFERTVKPVLDVKDKPKPAQWAFLSLQHLFAMFGSTVLVPFLTGLPISAALLASG IGTLLYILITKAKIPAYLGSSFAFITPIITGLSTHSLGDMLVALFASGVMYIIIGIFIKL SGTGWLMHLLPPVVVGPVIMVIGLSLAPTAVNMAMYENSGDMKGYNLSYLLVALVTLLVT IIVQGFFKGFLSLIPVLIGIIVGYIVSIFVGIVNFKPIAKASWLDFPDIYLPFKDYVPSI HIGLILVMLPIVFVTVSEHIGHQMVINKIVGRNFFENPGLHRSIIGDGVSTMFASIIGGP PSTTYGENIGVLAITKIYSIYVIGGAAVIAIILSFIGKFSALISSIPTPVMGGVSILLFG IIAASGLRMLVESRVDFASNRNLVIASVVLVVGIGNLLINLKSLGVNLQIEGMALAALSG IILNLILPKEKEESDIK >gi|312979642|gb|ACRM01000023.1| GENE 128 138033 - 138128 80 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MRHIIYPFNKYITRSPLHTSPFSVSRTGLKG >gi|312979642|gb|ACRM01000023.1| GENE 129 138129 - 138656 748 175 aa, chain - ## HITS:1 COG:SA1041 KEGG:ns NR:ns ## COG: SA1041 COG2065 # Protein_GI_number: 15926781 # Func_class: F Nucleotide transport and metabolism # Function: Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 175 1 175 175 249 82.0 1e-66 MSERIIMDKAAIQRTVTRIAHEILEYNKGTEQLVLLGIKTRGEFLARRIQEKIKQIEHHV VPTGTIDITHFRDDIENSKKPITKDAIEIDQDVTDKIVIIIDDVLYTGRTVRASLDAILL HSRPIKIGLAALVDRGHRELPIRADFVGKNIPTAKDEAVSVYLEEIDDRNAVIIE >gi|312979642|gb|ACRM01000023.1| GENE 130 138924 - 139841 1248 305 aa, chain - ## HITS:1 COG:SA1040 KEGG:ns NR:ns ## COG: SA1040 COG0564 # Protein_GI_number: 15926780 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Pseudouridylate synthases, 23S RNA-specific # Organism: Staphylococcus aureus N315 # 1 305 1 305 305 517 83.0 1e-146 METYKYKIEDEALVGQRIDKLLSDFNSEWSRSQLQDWIKNDLVTVNGKIIKSNYKVKLND EIQVTEKEVVEADILPENLNLDIYYEDKDVAIVYKPKGMVVHPSPGHYTGTLVNGLMYQI KDLSGINGEIRPGIVHRIDKDTSGLLMVAKNDVAHRGLVEQLMDKTVKRKYTALVHGNIP HDYGTIDAPIGRNKKDRQSMDVVDDGKEAVTHFNVLEHFNDYTLIECQLETGRTHQIRVH MKYIGFPLVGDPKYGPRKTLDIGGQALHAGVIGFKHPVTHEYIERHAELPQAFQSLLEDI RLRES >gi|312979642|gb|ACRM01000023.1| GENE 131 139853 - 140329 591 158 aa, chain - ## HITS:1 COG:SA1039 KEGG:ns NR:ns ## COG: SA1039 COG0597 # Protein_GI_number: 15926779 # Func_class: M Cell wall/membrane/envelope biogenesis; U Intracellular trafficking, secretion, and vesicular transport # Function: Lipoprotein signal peptidase # Organism: Staphylococcus aureus N315 # 1 158 1 158 163 196 75.0 1e-50 MKKKYYIGLSLIVAIVILIIDQLTKKIITATMNIGDSYEVIPHFLNITSHRNNGAAWGIL SGKMGFFYIITLIILAVLIIFYIKETKYNAFMQVAISLLFAGALGNFIDRLFNGEVVDFI DTNIFGYDFPIFNIADSSLTIGVIFVIIALVKDATKKE >gi|312979642|gb|ACRM01000023.1| GENE 132 140414 - 140869 610 151 aa, chain - ## HITS:1 COG:SA0270 KEGG:ns NR:ns ## COG: SA0270 COG3942 # Protein_GI_number: 15925983 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 36 143 190 297 297 112 50.0 2e-25 MVFVCMIFTGGAIFDGLDNQDMTEPTIHFWEKNPMKYNTYAKGQCTYYVFDRVKEDHHLI SNQWGDAKYWANKAKKQGYTVNENPTKGSILHYPKGKHGHVAYVEQVNNDGSLIVSDMNF RKPYEITTRFVDVYQVDQFNYIHPKSNTNMT >gi|312979642|gb|ACRM01000023.1| GENE 133 140895 - 141689 777 264 aa, chain - ## HITS:1 COG:SA1037 KEGG:ns NR:ns ## COG: SA1037 COG2514 # Protein_GI_number: 15926777 # Func_class: R General function prediction only # Function: Predicted ring-cleavage extradiol dioxygenase # Organism: Staphylococcus aureus N315 # 1 264 1 264 265 299 52.0 3e-81 MFHDNDAHFINGITLNVRDLRTLQPFYEELLGFKKVKETLTAVKYQIGDRHHYITLREIK SGRNPLSQEAGLFYIGVQLSNTHHLADLIEKLNDYELPINGGEQNVCTFIFVEDPEGHMF KFYVDKSISDWKQESEWIRLDIKPLDVSSLLPYASTIGWQGLPNDSKIGNISLKTIRLNE VREYYLNYFGLVPSAYLDDESFYLASEQYYCHLSMNQWNSKIKRIDNEHTYGLSIVDFHY PETHHINIKGPDGIQFRFNFIKVE >gi|312979642|gb|ACRM01000023.1| GENE 134 141881 - 143398 2010 505 aa, chain - ## HITS:1 COG:VNG2488C KEGG:ns NR:ns ## COG: VNG2488C COG0702 # Protein_GI_number: 15791253 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Predicted nucleoside-diphosphate-sugar epimerases # Organism: Halobacterium sp. NRC-1 # 4 298 3 293 300 169 32.0 2e-41 MGKILLTGASGYIGSHLKDKLKDNHEIIAISRNAQNKKNERNVTWKSADLFDLDAITEVM EGIDTAIYLVHSMMPSAKLTQANFEDMDALLADNFGRAAKKQGVKHIIFMSGIIPNDTQL SPHLKSRLECEKILGYYDIPVSTLRAGLIIGSKGSSYPILKRMIERLPAMILPNWAHNMI APVSIDDVIDKLAMLVERSPQENEAFDITGPKVMNYQELFERTAAILDKRLPTLNLPIIP IWLSRFWVRLISQVPKEMVYPLMDSLVHDMIPQPERIKPEISLGKMNYEESVRKALKEEQ NEQQTITTKQSKPKSKQDKKNEVKDVRAITRFKIPESYSMRDVTIEYAEFINDITLHLID GTINEHEFNIQLPLIKKFILKMTRHNHDSTSEMIVYKIVGGDLAMAKDGGNARFEFRRIL DTNEGIVALHEYEPTLPWGVYKFTQANAHKFVMDVFKHHMNHLANEEEDKQDPVNKIFTN LAMTTGAMIGAFVGARIYNKFLAKK >gi|312979642|gb|ACRM01000023.1| GENE 135 143601 - 146351 3555 916 aa, chain - ## HITS:1 COG:SA1036 KEGG:ns NR:ns ## COG: SA1036 COG0060 # Protein_GI_number: 15926776 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Isoleucyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 916 1 917 917 1704 88.0 0 MNYKETLLMPKTDFPMRGGLPNKEPKIQEQWEANNHYQKALEKNEGNQSFILHDGPPYAN GNLHMGHALNKIIKDIIVRYKTMQGFYSPYVPGWDTHGLPIEQALTKKGVDRKKMSIAEF REKCKEFALEQVELQKQDFKRLGVRGDFNNPYITLKPEYEAAQIRLFGEMADKGLIYKGK KPVYWSPSSESSLAEAEIEYHDKRSASIYVAFDVKDSKGTIDEDAQFIIWTTTPWTLPSN VAITVHPDLKYGQYNVNGKKYVIAEALAESVSEALGWDKDTIQLEKEFTGKELEYVETQH PFIDRVSLVINGGHVTTDAGTGCVHTAPGHGEDDYVVGQKYDLPVISPLDDKGVFTEEGG QFEGMFYDKANKAVTDLLTDKGALLKLDFITHSYPHDWRTKKPVIFRATPQWFASINKVR QDILDAIEETDFKVDWGKTRIYNMIRDRGEWVISRQRVWGVPLPVFYAENGDIIMTKETV NHVADLFEEYGSNVWFEREAKDLLPEGFTHPGSPNGEFTKETDIMDVWFDSGSSHRGVLE TRPELHFPADLYFEGSDQYRGWFNSSITTAVATRGQAPYKFLLSHGFVMDGEGKKMSKSL GNVIVPNQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSDVYRKIRNTLRFMLGNIN DFNPETDSVPEHELLEVDRYLLNRLREFTASTINHYDNFDYLNIYQEVQNFINVELSNFY LDYGKDILYIEQKDAHKRRSMQTVLYQILVDMTKLLAPILVHTAEEVWSHTPHVKEESVH LADMPKVVDVDQELLDKWNQFMSLRDDVNRALEAARNEKVIGKSLEAKVVIGNNDHFKAA EFLQQFNDLQQLFIVSQVEVTEKVDNGNEYQHGDIRIDHASGEKCERCWNYSEALGSVGE LDHLCPRCQEVVKTLV >gi|312979642|gb|ACRM01000023.1| GENE 136 146571 - 147251 809 226 aa, chain - ## HITS:1 COG:SA1035 KEGG:ns NR:ns ## COG: SA1035 COG3599 # Protein_GI_number: 15926775 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division initiation protein # Organism: Staphylococcus aureus N315 # 1 205 1 203 205 200 72.0 2e-51 MAFTPNEIRNKEFTRVKNGLEPAEVSDFLTQLSNEIERLKEEKKQLEKVLEERDTNIKSY QDVHQSVSDALIQAQQAGEQTKIAATKESEAIISKAKAQADVIVNDAIEKARHLSFQTED MKRQSKIFRSRFRMLVEAQLDLLKNDDWDYLLNYDFDAEQVTQENIQHLNPQDVNPNANS ETPTSETTETVSNEENQSINSNETTNTNKSTSENKDVSSSESSSNK >gi|312979642|gb|ACRM01000023.1| GENE 137 147315 - 148085 1008 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|49483354|ref|YP_040578.1| hypothetical protein SAR1167 [Staphylococcus aureus subsp. aureus MRSA252] # 1 256 13 268 268 392 74 1e-108 IDIYQHFRNEEQPLIDQLLDKCEQVNQQYAPVLTSFLDPRGQYILEVIVGSFEDMKVSYF GGQSAERKRAIIAPSYFEPTEGDFEEVLIQINYPEKFVSIQHQHVLGTLMSLGIEREQVG DILVSDTIQFVLTKQLESYIMMELTKIKGATVKLDSIPFKDMIQSKENWNIHHSTVSALR LDVVLKEMIRKSRSIAKQLIEKKRVKVNHTLIDSPDFQLQNNDLLSIQGFGRARIIDIGG KTKKEKVHITYQTLFK >gi|312979642|gb|ACRM01000023.1| GENE 138 148164 - 148460 387 98 aa, chain - ## HITS:1 COG:SA1033 KEGG:ns NR:ns ## COG: SA1033 COG0762 # Protein_GI_number: 15926773 # Func_class: S Function unknown # Function: Predicted integral membrane protein # Organism: Staphylococcus aureus N315 # 1 92 1 92 96 93 72.0 1e-19 MDVGILASIFNFILLLVQIYYWGMIIYFFTSWVPTIRESKFGSFLSKIYEPFLEPFRKII PPIGMIDISSIVALFVLVLFQYGLKSIFDMILNYLILK >gi|312979642|gb|ACRM01000023.1| GENE 139 148483 - 149073 771 196 aa, chain - ## HITS:1 COG:SA1032 KEGG:ns NR:ns ## COG: SA1032 COG1799 # Protein_GI_number: 15926772 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 189 4 182 187 197 68.0 8e-51 MAIKDLFNNFFLMEDEEEVESPAERQQRVTQNEENQNRNMQQQPIERTQNNQNHLKTVPQ KKVSKNYNTEERNYRMGNTSNKSNSKNVVTMNQSAGTGYSNYENSKMCLFEPRVFSDTQD IADELKNRRATLVNLQRIDKVSAKRIIDFLSGTVYAIGGDIQRVGADIFLCTPDNVEVAG SITDHLEQMNTQQHYE >gi|312979642|gb|ACRM01000023.1| GENE 140 149079 - 149753 844 224 aa, chain - ## HITS:1 COG:SA1031 KEGG:ns NR:ns ## COG: SA1031 COG0325 # Protein_GI_number: 15926771 # Func_class: R General function prediction only # Function: Predicted enzyme with a TIM-barrel fold # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 321 72.0 6e-88 MKVTENLEKIQAEINHHLEKSVIKTAPNVIAVTKYVTIDRAKEAYDAGLRHFGENRVEGF LEKKQALPKDVTMHFIGSLQSRKVKDVINDIDYLHALDRLSLAKEINKRATHTISCFIQV NVSGEETKHGIALSEVNDFIEQIKAFDNIKIVGLMTMAPYTDDKDYIHQLFKQLRLKRDE IKNLKLNYAPCEYLSMGMSNDYTIAVEEGATFIRIGTKLVGEEE >gi|312979642|gb|ACRM01000023.1| GENE 141 149816 - 150646 696 276 aa, chain - ## HITS:1 COG:SA1030 KEGG:ns NR:ns ## COG: SA1030 COG1496 # Protein_GI_number: 15926770 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 14 273 3 263 263 358 69.0 7e-99 MIILKSEGGFHNVEKFIKQPHYLSYTSQYDQLTLGFTTREDGKSPYPRDAFNMARYIDDE PSHVTHHQEILANAINFPTQQWVFPIQTHENNIAHITKAHCGANIKALGNELYGIDGMYT YDSDILLTMCYADCVPVYFYSEKHHFIALAHAGWRGTYGQIVVEMLKYVEFDYQDLNVVI GPATSSTYEINDDIKNKFETLPINSDKYIETRDNDRHGIDLKLANALLLKNSGVPAENIN ITKYTTSEDLSLFFSYRVEKGKTGRMLAFIGQKGEV >gi|312979642|gb|ACRM01000023.1| GENE 142 150801 - 151979 1831 392 aa, chain - ## HITS:1 COG:SA1029 KEGG:ns NR:ns ## COG: SA1029 COG0206 # Protein_GI_number: 15926769 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Cell division GTPase # Organism: Staphylococcus aureus N315 # 1 379 1 377 390 553 92.0 1e-157 MLEFEQGFNHLATLKVIGVGGGGNNAVNRMIDHGMNNVEFIAINTDGQALNLSKAESKIQ IGEKLTRGLGAGANPEIGKKAAEESREQIEDAIQGADMVFVTAGMGGGTGTGAAPVVAKI AKEMGALTVGVVTRPFGFEGRKRSTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMM EAFKEADNVLRQGVQGISDLIAVSGEVNLDFADVKTIMSNQGSALMGIGVSSGENRAVEA AKKAISSPLLETSIVGAQGVLMNITGGESLSLFEAQEAADIVQDAADEDVNMIFGTVINP ELQDEIVVTVIATGFEDKPTSQGRKASSTGFGSSATSSPSTQSAPKEDSFTHSTSNSRPS DGLSERSHTTKDDDIPSFIRNREERRSRRTRR >gi|312979642|gb|ACRM01000023.1| GENE 143 152009 - 153442 1668 477 aa, chain - ## HITS:1 COG:SA1028 KEGG:ns NR:ns ## COG: SA1028 COG0849 # Protein_GI_number: 15926768 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Actin-like ATPase involved in cell division # Organism: Staphylococcus aureus N315 # 1 477 1 470 470 639 80.0 0 MEEHYYVSIDIGSSSVKTIVGEKFHNGINVIGTGQTYTSGIKNGLIDDFDIAKQAIKDTI KKASIASGVDIKEVFLKLPIIGTEVYDEENEIDFYEDTEISGSHIETVLEGIRQKNDVPD TEVIDVFPIRFIVDGDNEVSDPKELIARHSLKVEAGVIAIHKSILINMIKCVESCGVDVL DVYSDAYNYGSILSATEKELGACVIDIGEDLTQIAFYERGELVDADSIELAGRDITDDIA EELNTTYETAEKIKHQYGHAYTQSASDQDVFSVDQVDSDELVEYTQKDLSAVIERTVQDI FDEVFDVLVDLGLTKVNGGFIVTGGSSNLLGVKELLSTMVNEKIRIHTPSQMGIRKPEFT SAISTISSSITFDELLDYVTINYQDNDEFEEEVIENDEHNHTSKSGGFDWFKRKSNKNED PDENHQPEVREKAEKHDDYETYDENNHQDGTHHYDDEHEKSDKEESKFKKLMKSLFE >gi|312979642|gb|ACRM01000023.1| GENE 144 153546 - 154691 1143 381 aa, chain - ## HITS:1 COG:SA1027 KEGG:ns NR:ns ## COG: SA1027 COG1589 # Protein_GI_number: 15926767 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division septal protein # Organism: Staphylococcus aureus N315 # 9 381 56 439 439 241 45.0 2e-63 MDDTRGNRNKKIRSIKRSFDKDKTELENDKNKKIKDDVKSKDRLQKEKNLSNDRRSNKSL NSSKNKGENLKKEVKTRLREKRNKFQNDKYSHLTVAEKREQQKIDKRKRQKRIQYIIVTT LILLIILFLLYMFTPLSRISHVNISGNHNVSDSQVEKELNIKKGSRIYTFSKSKAINNLK KNSLIKDVQINKQLPNTLNVKIIENNLVGIVKDKNKYVPIIEGNKKLDNYNGDIANSAPV LEDFKGDNLNSITKALSKMSNETRDMISEIKYAPLQNQQNRVLLYMKDGMQVVGDINTLA NKIEYYPQMSQSLAKDSSGQLKTQGYIDLSVGASFIPYNENSSINSKSDQNVRQKTQQET EAKNELQSALNKISEQSDTNN >gi|312979642|gb|ACRM01000023.1| GENE 145 154710 - 156056 1761 448 aa, chain - ## HITS:1 COG:SA1026 KEGG:ns NR:ns ## COG: SA1026 COG0771 # Protein_GI_number: 15926766 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramoylalanine-D-glutamate ligase # Organism: Staphylococcus aureus N315 # 1 448 1 448 449 783 86.0 0 MLNYTGLENKDVLVVGLAKSGYEAAKLLVKLGANVTVNDGKDLSKDPHAKDLETLGVKIV DGGHPLSLLDSNPIIVKNPGIPYTVSIIDEAYQRGLKILTEVELSYLISEAPIIAVTGTN GKTTTTSLIGDMFKKSRLTGRLSGNIGYVASKVAQETSPDEYLITELSSFQLLGIEHYRP HIAIITNIYSAHLDYHESLENYQNAKRRIYKNQTEDDYLICNYHQRHLIETENLKAKTLY FSTQQEVDGIYIKDNYIVYNNVNLINIDDLVLPGEHNLENILAAVLAAILAGVPIKAIVD SLTTFSGIEHRLQYIGTNRTNKYYNDSKATNTLATQFALNSFKQPIIWLCGGLDRGNGFD ELIPYMKHVRVMVVFGETQDKFAKLGNSQGKEVIKAVDIEDAVKKVQDVIEPNDVVLLSP ACASWDQYKTFEERGERFIESFRAYLPS >gi|312979642|gb|ACRM01000023.1| GENE 146 156058 - 157023 1042 321 aa, chain - ## HITS:1 COG:SA1025 KEGG:ns NR:ns ## COG: SA1025 COG0472 # Protein_GI_number: 15926765 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Staphylococcus aureus N315 # 1 321 1 321 321 469 87.0 1e-132 MLFIFAIIALLITFILVPVLIPTLKRMKFGQSIREEGPQSHMKKTGTPTMGGLTFLISII ITSMIAIFFTDHSNPIILLLFVTIGFGLIGFIDDYIIVVKKNNQGLTSKQKFLAQIAIAI IFFILSDVFHLIEFSTSINIPFTNFGIPLSFAYVIFIVFWQVGFSNAVNLTDGLDGLATG LSIIGFTMYAIMSFMLNAPAIGTFCIIMIFALLGFLPYNLNPAKVFMGDTGSLALGGIFA TISIMLNQEFSLLFIGLVFVIETLSVMLQVSSYKLTKKRIFKMTPIHHHFELSGWSEWKV VSVFWLVGLISGLIGLWIGVH >gi|312979642|gb|ACRM01000023.1| GENE 147 157198 - 159444 2764 748 aa, chain - ## HITS:1 COG:SA1024 KEGG:ns NR:ns ## COG: SA1024 COG0768 # Protein_GI_number: 15926764 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Cell division protein FtsI/penicillin-binding protein 2 # Organism: Staphylococcus aureus N315 # 28 715 28 715 744 1075 78.0 0 MAKRKIKIRKNKLGAVLLVGLFGLLFFVLVLRYSYIMITGHSDGQNLVMRANEKYLVKTQ EQPERGKIYDRNGKILAEDVQRYKLVAIIDKNAGEVGDTPRYVKDKKKTAKQLSKIIDMK PDEIEKRLNQKKAFQVEFGQKGTNLTYQDKVKLDKMDLPGITLYPETERFYPNGNFASHL IGMAQKNPDTGELNGALGVEKIFNSYLNGQKGSLSYIHDIWGYIAPNSKNEKAPKRGDDV HLTIDSNIQVFVEEALDDMVKRYEPKDLFAVVMDAKTGEILAYSQRPTFNPETGKDFGKK WANDLYQNAYEPGSTFKSYGLAAAIQEGKFNPKEKYESGHRDIMGSRISDWNKTGWGEIP MSLGFTYSSNTLMMHLQDLVGADKMKSWYERFGFGKSTNGMFDGELKGNIAWSNELQQKT SAFGQSTTVTPVQMIQAQSAFFNKGNMLKPWFVQSIDNPISKKTFYKGEKNIVGKPITSE TSDKVETELDKVVNSDKSHASNYRIDGYDIEGKTGTAQVVNENGSGYVKGANPYFVSFMG DAPKKHPRVIVYAGMSLAQKNDQEAYELGVSKAFKPIMENTLKYLNVGSKKDETQSAQYS KVPNVVGQSSQKAQDSLKGKDLQPVIIGNGNTIKAQSTRANTKLLPNSKVLAVTDGDITM PNMKGWTTDDVLAFQELTGINVTTKGSGYVTNQSVASGSTLKSNKKIEIELSTDDPNDNT SLTDSIGSDSNNTSDNSTDTTSNDKNDS >gi|312979642|gb|ACRM01000023.1| GENE 148 159425 - 159826 401 133 aa, chain - ## HITS:1 COG:SA1023 KEGG:ns NR:ns ## COG: SA1023 COG4839 # Protein_GI_number: 15926763 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Protein required for the initiation of cell division # Organism: Staphylococcus aureus N315 # 1 133 1 133 133 159 74.0 1e-39 MAVEKIYEPYEHIQHTSIPKEQPKTQTETKTVTKKVVVQLTRFEKFLYITLVTAIAVLAI YMLSLKMDAYDTNDKIAELDQKIEQQSNENNAIQSEIKKNSSYERIYDQAKKQGMSLKND NVKVVRTNGEAKN >gi|312979642|gb|ACRM01000023.1| GENE 149 159840 - 160775 1176 311 aa, chain - ## HITS:1 COG:SA1022 KEGG:ns NR:ns ## COG: SA1022 COG0275 # Protein_GI_number: 15926762 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis # Organism: Staphylococcus aureus N315 # 1 311 1 311 311 562 90.0 1e-160 MFHHVSVMLKETIDELDIKEDGIYVDCTLGGAGHALYLLNQLNDDGRLIAIDQDTTALEN AKEVLRDHLHKVTFVHNNFRELTDILKNLGIEKVDGIYYDLGVSSPQLDIPERGFSYHHD AKLDMRMDQTQELTAYDVVNDWPYEALVKIFYRYGEEKFSKQIARRIEAHREQQPIETTL ELVDIIKEGIPAKARRKGGHPAKRIFQAIRIAVNDELSAFEDSIEQAIEHVKVKGRISVI TFHSLEDRLCKQIFQEYEKGPDVPRGLPIIPEAYTPKLKRVNRKPITATEEDLDENNRAR SAKLRVAEILK >gi|312979642|gb|ACRM01000023.1| GENE 150 160790 - 161221 436 143 aa, chain - ## HITS:1 COG:SA1021 KEGG:ns NR:ns ## COG: SA1021 COG2001 # Protein_GI_number: 15926761 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 143 1 143 143 249 96.0 1e-66 MFMGEYEHQLDAKGRMIIPSKFRYDLNERFIITRGLDKCLFGYTLEEWQQIEEKMKTLPM TKKDARKFMRMFFSGAIEVELDKQGRINIPQNLRKYANLTKECTVIGVSNRIEIWDRETW NEFYEESEESFEDIAEDLIDFDF >gi|312979642|gb|ACRM01000023.1| GENE 151 161364 - 162977 1510 537 aa, chain - ## HITS:1 COG:SA1020 KEGG:ns NR:ns ## COG: SA1020 COG4365 # Protein_GI_number: 15926760 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 537 1 537 537 637 59.0 0 MNCKVTNFQEKDSFITKLENSDETLLKFYQYNPVKPSSFDQRMDRPNNGREQQLAQVIKS YMSDLNITEIQQTHLTALSEGAKVVIGGQQAGLFGGPLYTFHKILSIVNLSRELTETYQQ TVVPVFWIAGEDHDFEEVNHTYAYNAKDAHLHKVKYHTMTPPETSVSRYILEKEQMIEAL NQFFKELKETKHTNALYQVCLEIIEKYNNWTDIFKGLLQEVFKDYGVLFIDAQYEKIREL EKPLLKNIIQKHNEINQAFRKTQKLTTQSGLNKMIETDTNVHLFLHEDSMRQLITKKDDV FKLSKSDITYNKDELLKLVEKEPTRFSNNVVTRPVMEEWLFNTVAFIGGPSEIKYWAELN EVFKILDVEMPIVLPRMKITYLPIRIEKLINQYKLNAKNVIMNGIETDREKFVRSKASDT FIKKVESLKENHAKIYESLRKEVNDNHDNINLVKKNYDIHNKQFEYLLNRYLLNIERDND ISMKHFREIEHVLHPMGGLQERIWNPLQMMNEFGIDVFSPSTYPPLKYTFNQIVIKP >gi|312979642|gb|ACRM01000023.1| GENE 152 163351 - 164040 745 229 aa, chain - ## HITS:1 COG:SA1018 KEGG:ns NR:ns ## COG: SA1018 COG1011 # Protein_GI_number: 15926758 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Staphylococcus aureus N315 # 1 228 1 228 228 271 60.0 8e-73 MKYDTILLDFDDTIVDFFDAEDRAFHQMAHHFGHYPTEEDFQYFKKVNQNHWEAFQKNEL SKEEVLTHRFINYFKEYGIDVDGKKADVLFRDELAKAPLKFFNSTLETIDRLSQECELFI VTNGVTDTQKRRIAQLEFKDILSGVYISEETGYQKPMSEFFDYIFERIGEEKRKTSIIVG DSLTSDILGGKNAGITTCWFNYRNKENNSDIVPDYEIQSLYELVNLVKE >gi|312979642|gb|ACRM01000023.1| GENE 153 164166 - 164300 223 44 aa, chain - ## HITS:1 COG:no KEGG:SERP0738 NR:ns ## KEGG: SERP0738 # Name: not_defined # Def: phenol soluble modulin beta 1 # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 44 1 44 44 63 86.0 2e-09 MTKLAEAIANTVTAAQNQDWTKLGTSIVDIVSSGASVLGKVFGF >gi|312979642|gb|ACRM01000023.1| GENE 154 164343 - 164477 241 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|223043774|ref|ZP_03613817.1| ## NR: gi|223043774|ref|ZP_03613817.1| conserved domain protein [Staphylococcus capitis SK14] # 1 43 1 43 44 64 79.0 2e-09 MDKLFDAIRNTVDAGINQDWTKLGTSIVDIVSSGVSILGKYLGF >gi|312979642|gb|ACRM01000023.1| GENE 155 164512 - 164646 225 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKLVEAIKNTVDAAQNQDWTKLGTSIVDIVSSGVGILSKVFGF >gi|312979642|gb|ACRM01000023.1| GENE 156 164689 - 164823 268 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|223043774|ref|ZP_03613817.1| ## NR: gi|223043774|ref|ZP_03613817.1| conserved domain protein [Staphylococcus capitis SK14] # 1 43 1 43 44 62 76.0 8e-09 MDKLFDAIKNTVDAGINQDWTKLGTSIVDIVSSGVSILGKYLGF >gi|312979642|gb|ACRM01000023.1| GENE 157 164864 - 164998 296 44 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228476262|ref|ZP_04060964.1| ## NR: gi|228476262|ref|ZP_04060964.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 44 1 44 44 71 100.0 1e-11 MEGLFNAIKDTVTAGINGDWTKLGTSIVSIVENGVGLVSKYLGF >gi|312979642|gb|ACRM01000023.1| GENE 158 165665 - 166657 1156 330 aa, chain + ## HITS:1 COG:BS_yokF KEGG:ns NR:ns ## COG: BS_yokF COG1525 # Protein_GI_number: 16079220 # Func_class: L Replication, recombination and repair # Function: Micrococcal nuclease (thermonuclease) homologs # Organism: Bacillus subtilis # 67 328 21 295 296 187 42.0 2e-47 MEVNQNKKETNGCLSCLGCFGIIFLILLLIGGCSAIFSDDNNNDNTDKISEEKNKSKKTE DTNKNNTSKESKKKYNENEQSVSQNNSIKKSEEKDKDNDESDIGTTNKIPVKLSSTVDGD TAKFIYKGKTETYRFLLIDTPETKHPRVGKQPFGQEASDRTAELLNNAKNIEIEFDIGQK EDKYNRKLAYIYVDGEMLNNILVKEGLAKVAYVYPPNTRYLETLESSQEQAKAEKMGIWS LDSAFKEDNEDNKEMNTSNNNENNAIENQVDNSLSNDSQSNDTEQSTSNVETFPNCTALR KVHPNGVPSNHPAYTSKFDRDGDNYACEVN >gi|312979642|gb|ACRM01000023.1| GENE 159 166908 - 167459 780 183 aa, chain + ## HITS:1 COG:no KEGG:SH1807 NR:ns ## KEGG: SH1807 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 183 1 175 175 160 59.0 3e-38 MEEKFNNEQEERQFRQFQEYQKQQEEEKKKKRKKGWLWGCGGCLVLLILLIIGLTSCTGA FVNEVDKQMNKDSSEVKEDKNASKEQTAALNSAKNYADGMHMSKQGIYEQLTSSAGDQFS EEDAQYAVDHLKADYKKNALESAKSYQKDMNMSKDAIYDQLISSSGDKFIEEEAQYAVDH LDD >gi|312979642|gb|ACRM01000023.1| GENE 160 167509 - 168180 1099 223 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228476256|ref|ZP_04060958.1| ## NR: gi|228476256|ref|ZP_04060958.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 110 1 110 238 63 61.0 9e-09 MKKFLALIFSSALILGACGNDDTSNKDSDTKSENKTEKKSEDKKDNKSKEDKKSKEEKKS QENEDNKSKQEDNSTEELNTQETATSEQVQSQQQTQETATQEQQQTQQANNGQQQSDNHE PTKEKIYEWDKENIPRGTDYGLIDPEDVNEQSDNSQSNDSNTNYDPNNPYMNIPDQEWRN NTGDGLSSGEKQLQYQIEQGEYDGNDGQQILDALDYYQDKYGN >gi|312979642|gb|ACRM01000023.1| GENE 161 168356 - 168916 203 186 aa, chain + ## HITS:1 COG:SA1810 KEGG:ns NR:ns ## COG: SA1810 COG0582 # Protein_GI_number: 15927578 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 1 177 41 217 345 172 51.0 3e-43 MSELKNGIDYQPNLTLNEYFKTWCETFKLSTVIPRTYKSYASAIKHISEHSIGKKSLKDI SRYHYQNFINDFSKSPSKESIRKSNGYIRISLDDAVYEGLITKTPTFKVNYKASNPNKSE DSKFINLEDYEKLKQYLKTRDNASSLVLYIMICTVCRVSGVLNLKRAYLNQVKNEIYRRT QNRLIT >gi|312979642|gb|ACRM01000023.1| GENE 162 168876 - 169259 216 127 aa, chain + ## HITS:1 COG:SA1810 KEGG:ns NR:ns ## COG: SA1810 COG0582 # Protein_GI_number: 15927578 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 3 127 217 345 345 129 51.0 1e-30 MKYIDEHKTDSSPRYVEVSKDDMKFIVQSVSKLPTTIDGSVFGNLTINAVNKRLKAYCND LGVKEITSHTLKHTHCSYLLAKCVSIYYISKSLGHKNISVTTEVYSHLLEEQYKEENQKA VEIINAM >gi|312979642|gb|ACRM01000023.1| GENE 163 169687 - 170208 490 173 aa, chain - ## HITS:1 COG:SA0999 KEGG:ns NR:ns ## COG: SA0999 COG0622 # Protein_GI_number: 15926736 # Func_class: R General function prediction only # Function: Predicted phosphoesterase # Organism: Staphylococcus aureus N315 # 4 170 1 167 167 231 67.0 6e-61 MSKMSKWLIVSDNHTESGILYELYDYHKDADICLHLGDSEFKYNDTELSLYQRVKGNCDF YPEFPNEDIIEKNSVKALYTHGHLYGVNQTRMGLAEKAQALGCQFAFYGHTHIAKYEKLG DVHIINPGSISQSRSNIEETYAELLIEDESKKATLNFRNRDHQVIQSIEFEIN >gi|312979642|gb|ACRM01000023.1| GENE 164 170208 - 170789 363 193 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|74313511|ref|YP_311930.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Shigella sonnei Ss046] # 4 189 4 194 197 144 43 3e-33 MADIVIASNNKGKINDFKTIFPNDNVIGISEIIKDFDVEETGTTFEENARLKSEAAAKAL NKRVIADDSGLEVYALNGEPGVYSARYAGLEKNDESNIDKVLKKLEGKTNRKAQFVCVIS MSAPNEPTHIFKGTVSGEITTERKGDYGFGYDPIFYLPEKNKTMAELTTEEKSDVSHRGN AIKALNEYLEREK >gi|312979642|gb|ACRM01000023.1| GENE 165 170820 - 171617 884 265 aa, chain - ## HITS:1 COG:SA0997 KEGG:ns NR:ns ## COG: SA0997 COG0796 # Protein_GI_number: 15926734 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glutamate racemase # Organism: Staphylococcus aureus N315 # 1 265 1 265 266 468 85.0 1e-132 MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIARCPYGPRPGEEVKTFTTQLANKL MEFDIKMLVIACNTATAVALEHLQQLLPIPVIGVIEPGARTAIMTTKNQKVLILGTEGTI KSEAYRHHIKRINPNVEVYGVACPGFVPLVEQMRYDDPTITSIVIHQTLKHWRNTDADTV ILGCTHYPLLYKPINDYFGGNKKVISSGLETAREVSALLTFSNEHASYTQHPKHRFFATG DTVHIKHIISQWLKLDVEVERIKVD >gi|312979642|gb|ACRM01000023.1| GENE 166 171793 - 172650 1094 285 aa, chain - ## HITS:1 COG:SA0996 KEGG:ns NR:ns ## COG: SA0996 COG0479 # Protein_GI_number: 15926733 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit # Organism: Staphylococcus aureus N315 # 5 284 4 270 271 481 86.0 1e-136 MANNQSVKDTPEELRHTYEQHNQEITHKKEKHTQKTVKLIIKRQDNQEAKAYEETFEIPY KENLNVIACLMEIRRNPVNSKGEKTTPVVWDMNCLEEVCGACSMVINGRARQACSAIVDQ LEQPIRLEPMSTFPVIRDLQVDRTRMFDNLKRMKAWIPIDGTYDLGPGPRIPEKKRQTAY ELSKCMTCGVCLEVCPNVTRNNKFIGAQAISQVRLFDLHPTGSMTKDERLNALMSEGGLQ ECGNSQNCVNACPKGIPLTTSIAAMNRETSFHMFKSFFGSDHQVN >gi|312979642|gb|ACRM01000023.1| GENE 167 172650 - 174416 2281 588 aa, chain - ## HITS:1 COG:SA0995 KEGG:ns NR:ns ## COG: SA0995 COG1053 # Protein_GI_number: 15926732 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, flavoprotein subunit # Organism: Staphylococcus aureus N315 # 1 588 1 588 588 1127 91.0 0 MAEKKIIVVGGGLAGLMSTIKAAEQGAHVDLFSIVPVKRSHSVCAQGGINGAVNTKGEGD SPWIHFDDTVYGGDFLANQPPVKAMTEAAPKIIHLLDRMGVMFNRTNEGLLDFRRFGGTL HHRTAYAGATTGQQLLYALDEQVRSFEVDGLVTKYEGWEFLGLVKDDENAARGIVAQNLT TSEIKSFGSDAVIMASGGPGIIFGKTTNSMINTGSAASIVYQQGAKYANGEFIQIHPTAI PGDDKLRLMSESARGEGGRIWTYKDGKPWYFLEEKYPDYGNLVPRDIATREIFDVCINQK LGINGENMVYLDLSHKDPHELDVKLGGIIEIYEKFTGDDPRKVPMKIFPAVHYSMGGLYV DYDQMTTIKGLFAAGECDFSQHGGNRLGANSLLSAIYGGTVAGPNAIKYVENIETSYTEL DDSIYQNRVDEEQKRFDELLNMRGTENAYKLHRELGEIMTANVTVVRENDKLLETDKKIV ELMERYQNIDMEDTQTWSNQAVFFTRQLWNMLQLARVITIGAYNRNESRGAHYKPEFPDR NDDEWLKTTLAEYQGEYEAPKFTYEPVDISLIPPRKRDYTSKSKGGKK >gi|312979642|gb|ACRM01000023.1| GENE 168 174497 - 175111 711 204 aa, chain - ## HITS:1 COG:SA0994 KEGG:ns NR:ns ## COG: SA0994 COG2009 # Protein_GI_number: 15926731 # Func_class: C Energy production and conversion # Function: Succinate dehydrogenase/fumarate reductase, cytochrome b subunit # Organism: Staphylococcus aureus N315 # 1 203 1 203 204 293 76.0 1e-79 MAKSKNEFYLRRLHSLLGIIPIGAFLIVHLMVNHQATQGAEAFNKAAGFMESLPFLLAAE LILIYIPILYHGLYGIHIAFTAKENIGHYSLFRNWMFALQRLTGIIAFVFIFVHLWQTRL QKLFFGKEISYDMMNQTLQNPIWVIVYIICVIAVIFHFSNGIWSFLVTWGFLQSKKSQRI FTWVSLIIFLILSYIGVTAILAFA >gi|312979642|gb|ACRM01000023.1| GENE 169 175531 - 177315 2195 594 aa, chain - ## HITS:1 COG:SA0993 KEGG:ns NR:ns ## COG: SA0993 COG0322 # Protein_GI_number: 15926730 # Func_class: L Replication, recombination and repair # Function: Nuclease subunit of the excinuclease complex # Organism: Staphylococcus aureus N315 # 1 593 1 593 593 1037 87.0 0 MTDYEEKIRDKLSVVPFEPGCYLMKDRNDQIIYVGKAKRLRNRLRSYFTGAHDAKTTRLV SEIRNFEFIVTSSETESLLLELNLIKQYQPRYNILLKDDKSYPFIKITKEKHPRLLVTRT VKKGTGKYFGPYPNAYSAQETKKLLDRIYPFRKCDNMPDKLCLYYHIGQCMGPCVYDVDQ QKYAQMTREITDFLNGEDKTILHNLETRMLDASEKLDFERAKEYRDLIQHIRNLTKKQKI MSSDNTIRDVFGYSVSKGWMCIQVFFIRQGNMIQRDATMIPLQQTEEEEFYTFIGQFYSL NQHILPKEVHVPKNLDKDIIHSVVDTKIVQPARGTKKEMVDLANHNAEVALENKFQLIAK DESRTIKAIEELGERMGIQTPIRIEAFDNSNIQGVDPVSAMVTFVDGKPDKKGYRKYKIK TVKGPDDYKSMREVVRRRYTRVLNEGLPLPDLIIVDGGKGHMSGVIDVLENELGLDIPVA GLRKNDKHQTSELLYGANAEVVPLKKNSQAFYLLHRIQDEVHRFAITFHRQTRQKTGLQS VLDTVEGIGSKRKTKLLRTFGSIKKMKEASIEDLKAAGLPKRVAENLQYALKED >gi|312979642|gb|ACRM01000023.1| GENE 170 177412 - 177726 538 104 aa, chain - ## HITS:1 COG:SA0992 KEGG:ns NR:ns ## COG: SA0992 COG0526 # Protein_GI_number: 15926729 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 104 1 104 104 182 89.0 2e-46 MAIVKVTDSNFDENIQSGVKLVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDEN PSTAAKYEVMSIPTLIVFKDGEAVDKVVGFQPKENLAEVLDKHL >gi|312979642|gb|ACRM01000023.1| GENE 171 177907 - 180258 2800 783 aa, chain - ## HITS:1 COG:SA0991 KEGG:ns NR:ns ## COG: SA0991 COG1193 # Protein_GI_number: 15926728 # Func_class: L Replication, recombination and repair # Function: Mismatch repair ATPase (MutS family) # Organism: Staphylococcus aureus N315 # 1 783 1 782 782 1232 84.0 0 MRQKTLDVLEFDKIKSFVASETISDLGREKVSKMSPATDFETVEFQMNETDEISQIYNKH RLPSLSGLSKVSPLIHRAKIGGVLNVTELNVIKRLIQVQNQFKTFYNQLLEEDEGVVKYP ILNERMNQLPVLTDLYQEINEKCDAYDLYDNASYELQGIRSKISSTTQRIRQNLDRIVKS QANQKKLSDAIITVRNDRNVIPVKAEYRQDFKGIVHDQSASGQTLYIEPSSIVEMNNQIS RLRNDEAVERERILTELTGLVAADDNNCLVAESVMGQIDFLTAKARYARSIKGTKPTFYK ERTVYLPNAYHPLLNKDTVVANTIEFIDDIETVIITGPNTGGKTVTLKTLGLIIVMAQSG LLIPTLDGSQLSVFENVYCDIGDEQSIEQSLSTFSSHMKNIVEILKETDKNSLVLFDELG AGTDPSEGAALAMSILDHVRDIGSLVMATTHYPELKAYSYNREGVMNASVEFDVNTLSPT YKLLMGVPGRSNAFDISKKLGLGLNIINKAKTMIGTDEQEINSMIESLEKNSKRVDEQRI ELEKLLREARTTHDDLERQYQQYKNYEQKLMDEAKDKANQRIKSATKEADDILKDLREMR DKKGADVKEHELIDKKKHLEDQYEAKSLKQNVKKQKWDDIHAGDEVKVLSYGQKGEVLEL SGEHEAIVQMGIIKMKLPIEDLEKTKKKKEKPTKMVTRQNRQTIKTELDLRGYRYEEAVG ALDQYIDQAVLSNYEQVYIIHGKGTGALQKAVQNHLKKHKSVQSFRGGIPSEGGFGVTVA ELK >gi|312979642|gb|ACRM01000023.1| GENE 172 180268 - 182022 1902 584 aa, chain - ## HITS:1 COG:SA0990_1 KEGG:ns NR:ns ## COG: SA0990_1 COG1796 # Protein_GI_number: 15926727 # Func_class: L Replication, recombination and repair # Function: DNA polymerase IV (family X) # Organism: Staphylococcus aureus N315 # 15 348 1 334 334 491 78.0 1e-138 MDINLLVSFYGVNVMTKKDVIQLLEKIAIYMELNGENTFKVSAYRKAAQSLEIDERSLDE IKDVTELKGIGKGVGEVISEYRETGTSSTLKELQRLVPEGLISLMKIQGLGSKKIAKLYK ELNITDKESLQEACEAGKVSELSGFAKKTEQNILEAVKALGAKKDHYPIDLMRHLNKDIM TYLEQLEEVEHYSEAGSFRRYKEVSKDLDYIISTRHPLHVQQQLLNIPNKVKEVAVGETK VSLELEYDDETIGVDFRLVEPEAFYHTLQHFTGSKDHNIRIRQLAKAQNEKVSEYGIEQQ DGTLLQFQSEAEIYQHFGRHWIAPAIREDGSEFDRDLNSIITLDDIKGDLHMHTTYSDGA FSIREMIEANIKKGYEYMVITDHSKSLKVAHGLQVERLLRQNEEIKKLNEEYTEIDIYSG TEMDILPDGSLDYEDDILSQLDYVIAAIHQSFNQSEEGIMKRLEHACRNPYVRHIAHPTG RIIERREGYQPNMEQLMQLAEETQTVMEINANPKRLDLNAATVKKYPNIKLTINTDAHHV DHLDFMKYGVATAQKGFVNKDRVINTMTRDAFKNFINNNIKLQK >gi|312979642|gb|ACRM01000023.1| GENE 173 182053 - 182538 277 161 aa, chain - ## HITS:1 COG:SA0989 KEGG:ns NR:ns ## COG: SA0989 COG1286 # Protein_GI_number: 15926726 # Func_class: R General function prediction only # Function: Uncharacterized membrane protein, required for colicin V production # Organism: Staphylococcus aureus N315 # 6 161 18 173 173 141 52.0 5e-34 MYMIIGFRRGLWLNSLHLSSTLVSLFIAHRFYQYISKQMIVFVPFPKTVAFDTHFAFQYH DVQQRFDTIVAFLCIAFISKLLLYLIIVTFDNIVSYHNIHVTSRILGSVLGSIASVIVLQ LVLYLVSLYPNEWIQESLKYGYLSHIILFKMPFLSSYILNL >gi|312979642|gb|ACRM01000023.1| GENE 174 182575 - 182841 326 88 aa, chain - ## HITS:1 COG:SA0988 KEGG:ns NR:ns ## COG: SA0988 COG3027 # Protein_GI_number: 15926725 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 87 1 87 88 107 68.0 4e-24 MVEFKNRINVSINDQNFTIIGDDDPEHIRYVAHLVDEQLRLLGRKSAGLDTTRKAILTAV NIMDEKVKLEEENEILKQMIYELKHQDS >gi|312979642|gb|ACRM01000023.1| GENE 175 183054 - 183980 870 308 aa, chain + ## HITS:1 COG:SA0987 KEGG:ns NR:ns ## COG: SA0987 COG1039 # Protein_GI_number: 15926724 # Func_class: L Replication, recombination and repair # Function: Ribonuclease HIII # Organism: Staphylococcus aureus N315 # 1 299 1 305 312 393 66.0 1e-109 MGNVVHKLTNQDIEQLMNQINFSTSNLPNGMKARTKYHDTVISIYNSGKVMFQGKRAEHI ARQFCTTDSGTNSKSSKADGFHNITYDDYNCIGSDEAGSGDYFGPLTVCAAYVSKEHIDI LRTLGVDDSKKLTDTKIIELAEQLITFIPHSLLTLNNTKYNERQALGWSQVKMKAVLHNE AIKNVTNKIDTKALDYIVIDQFAERNVYKRYALSDLPFPNQTKFETKGESKSLAIAAASI ISRYAFIKHMNSISKMMHFDIPKGASHKVDLIAAQIIEKYNISKLDSISKKHFKNRDKAW TLVNKKYQ >gi|312979642|gb|ACRM01000023.1| GENE 176 184350 - 184532 57 60 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKPVNDFIINSFTGYFFRIYVPISSLFYYRIVAPLAFNASKILSCTLETRLSVSVFSVSK >gi|312979642|gb|ACRM01000023.1| GENE 177 184433 - 186835 3334 800 aa, chain - ## HITS:1 COG:SA0986_2 KEGG:ns NR:ns ## COG: SA0986_2 COG0072 # Protein_GI_number: 15926723 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase beta subunit # Organism: Staphylococcus aureus N315 # 159 800 1 642 642 981 75.0 0 MLISNEWLKDYVDAGVPAKDLAERITRTGIEVADIIDYSKDIKNLVVGYVTSKEKHPDAD KLNICQVDIGEEELVQIVCGAPNVDENQYVIVAKVGGRLPGGIKIKRAKLRGERSEGMIC SLQEIGVSSNVVPKDYENGIFVFPNEVTPGTDALDALYLNDQIMEFDLTPNRADALSMVG TAYEVAALYQAEMTKPNTTLNETETSATDELSVTVDNPEKVPYYSARVVKNVRIAPSPIW MQARLIKAGIRPINNVVDISNYVLLEYGQPLHMFDQDHMGSKDIVVRQANENETMTTLDD TERTLIDTDIVITNGKEPIALAGVMGGDFSEVTDQTMNVVVEGAIFDPVSIRHTSRRLNL RSESSSRFEKGIATEFVNEAVDRACYLLEHYASGEVLKDRVAQGDLGSLVTPIDITAEKV NQTIGFNLSNDEIKAIFEQLGFKTIQNADTLTVYVPSRRKDISIKEDLIEEIARIYGYDN IPSTLPVFDDVTSGKLTDRQYKTRTVKETLEGAGLNQAITYSLVSKDHAKDFALQERPTI SLLMPMSEAHSTLRQSLLPHLIEATAYNVARKNKNVRLYEIGRVFFGNGKDELPDEIEYL SGILTGEYVVNTWQGKKEEIDFFIAKGVVDRIAEKLNLDFTYKAGEIKGLHPGRTAIVSL EGKEIGFVGELHPQLAAENDLKRTYVFELDYDSMMRVAVGYINYEPIPKFPGVSRDIAME VNRDMPSSELLDIIHENGEDILKNTLVFDVYEGEHLEEGKKSVAIRLNYLDTENTLTDKR VSKVHDKILEALKAKGATIR >gi|312979642|gb|ACRM01000023.1| GENE 178 186835 - 187893 1413 352 aa, chain - ## HITS:1 COG:SA0985 KEGG:ns NR:ns ## COG: SA0985 COG0016 # Protein_GI_number: 15926722 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Phenylalanyl-tRNA synthetase alpha subunit # Organism: Staphylococcus aureus N315 # 1 351 1 351 352 649 89.0 0 MTQNDSMTELRQQALVDINEAQDERALQDVKVKYLGKKGSVSGLMKNMKDLPNEEKPAYG QKVNELRQAIQNELEEKQELLKNEKLNQQLAEETIDVTLPSRQINIGSKHPLTRTVEEIE DLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYITDEILMRTHTSPVQART MEKRHGQGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKHIKMSDLKGTLELVAKKL FGADREIRLRPSYFPFTEPSVEVDVSCFKCKGQGCNVCKHTGWIEILGAGMVHPNVLEMA GFDSNEYSGFAFGMGPDRIAMLKYGIEDIRHFYTNDVRFLNQFKAVEDRGEA >gi|312979642|gb|ACRM01000023.1| GENE 179 188245 - 188985 204 246 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 108 244 102 242 255 83 31 8e-15 MEQITSTQNNKIKLANKLKKKKERDKTGLALIEGIHLIDEAFKSNIMIKQLFVIEPERTD SRLLEYAKEAYEINMKVAESLSGTITPQGFFAVIEKPKHNISKAKQVLLLDRIQDPGNLG TLIRTADAAGIDMVVMEKGTADAYQDKVMRASQGSVFHIPIVTTELNKFIEQFDGPVYGT ALENAVSYKNIESQDTFALLLGNEGEGVNKELLAHTSQNLIIPIYGKAESLNVAIAGSIL LYHLKG >gi|312979642|gb|ACRM01000023.1| GENE 180 189101 - 189274 313 57 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27467745|ref|NP_764382.1| 50S ribosomal protein L32 [Staphylococcus epidermidis ATCC 12228] # 1 57 1 57 57 125 100 2e-27 MAVPKRRTSKTRKNKRRTHFKISVPGMTECPNCGEYKLSHRVCKNCGSYNGEEVVSK >gi|312979642|gb|ACRM01000023.1| GENE 181 189359 - 189913 711 184 aa, chain - ## HITS:1 COG:SA0975 KEGG:ns NR:ns ## COG: SA0975 COG1399 # Protein_GI_number: 15926711 # Func_class: R General function prediction only # Function: Predicted metal-binding, possibly nucleic acid-binding protein # Organism: Staphylococcus aureus N315 # 1 184 1 184 185 249 71.0 2e-66 MKWSITQLRKYQGKPFEFNEKANFDDLIEPLGLIDLSEVNIEGELTIKSNEVIADMHVTG TYTMPCARTLVPVDVPLDVRTSEVFDLEGYNSYTEEEVDEDEHYHLATDGMINIRDIAKE LVIIEKPMRAFSENSDQMLTEGNGWEVIDEEQALELENSKDNDDSQTRQVDPRLQKLQQL YDKE >gi|312979642|gb|ACRM01000023.1| GENE 182 190040 - 191179 1069 379 aa, chain + ## HITS:1 COG:SA0974 KEGG:ns NR:ns ## COG: SA0974 COG1323 # Protein_GI_number: 15926710 # Func_class: R General function prediction only # Function: Predicted nucleotidyltransferase # Organism: Staphylococcus aureus N315 # 1 376 1 376 379 412 58.0 1e-115 MKSVGLITEYNPFHNGHAYHAQQAKTQSDAKISIAIMSGNFVMRGEPAIYNKFLRTQMAL SNVDLVVELPLIASLSSSDYFAQIAVQVARYLDVDTIAFGSETPDITRLKNAANEIINLE HSSTFNQKVKEGSNYAKIINDLISDNTLLKMPNNILAITYLKAIQQFAPYMKGLAIQRVH AHHHDATIETSSFASGSAIRQSLITQATQWTTVVPSSIQSLYTTPHLTKEDTFSLIKYHI LSHSIHEMAHIYTISEGLEHRLKKYINQATSFESFMSLLKTKRFTYTHLQRILMQILLNV KKEDSIQSISAVRILGMNRRGQSYLKQLKTKFPERQFITNINKTSAHFFKNEIKATDIYN LLSGQKKNDFNTPVIRLNN >gi|312979642|gb|ACRM01000023.1| GENE 183 191226 - 191711 446 161 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764798|ref|ZP_02171851.1| ribosomal protein S19 [Bacillus selenitireducens MLS10] # 1 159 1 159 164 176 53 7e-43 MTKTKAVIPGSFDPITYGHLDIIERSSDRFDELHVCILKNSSKAGTFSIEERMELIRESV KHLPNVKVHNFNGLLVDFCDKIGSKTIIRGLRAVSDFEYELRLTSMNKKLNSNVETMYMM TSTNYSFISSSVVKEVAQYKADISDFVPSHVERALKEKFED >gi|312979642|gb|ACRM01000023.1| GENE 184 191704 - 192255 350 183 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764797|ref|ZP_02171850.1| ribosomal protein L29 [Bacillus selenitireducens MLS10] # 1 172 13 198 199 139 41 1e-31 MRVIAGKHKSKPLESLEGRNTRPTMDKVKEGIFNSLHEVYGLGLDLFAGSGALGIEALSR GMDKVIFVDQNFKAVKVIQANLKQLNLEEQSEVYKNNADRALKAINKRDIQFDFIFLDPP YNKGLIDKALDQISKFNLLKEHGIIICEFSNQEKINTYDFEVIKQYHYGLTDTLLLKKGE HND >gi|312979642|gb|ACRM01000023.1| GENE 185 192326 - 192715 441 129 aa, chain + ## HITS:1 COG:no KEGG:SH1830 NR:ns ## KEGG: SH1830 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 129 1 129 129 203 81.0 2e-51 MKQSFIILGEGLTDLFEFLTLIEYNHARIDKVVYFHTPQSDKQLSSVAIIMNPTTGKQFQ AMYMMLNALKYPYPNSNKKFEMINEQAQSYDIPIVGIDVQPPNAFHTNDLYFKYLISVIR LQNWIPPMQ >gi|312979642|gb|ACRM01000023.1| GENE 186 192733 - 192984 309 83 aa, chain - ## HITS:1 COG:SA0970 KEGG:ns NR:ns ## COG: SA0970 COG4471 # Protein_GI_number: 15926706 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 82 1 82 84 97 71.0 8e-21 MELIPRVSLIIYLKHIKHERQIRKYGHIVYTNKPRKYIVMYVNEHEVDDILQKLMKLKYV LHIDGSPYKNLKKTYDKEKHEML >gi|312979642|gb|ACRM01000023.1| GENE 187 193174 - 194064 1087 296 aa, chain + ## HITS:1 COG:SA0969 KEGG:ns NR:ns ## COG: SA0969 COG0584 # Protein_GI_number: 15926705 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Staphylococcus aureus N315 # 2 290 17 305 308 392 67.0 1e-109 MGILSSLLLLKRNQKPNMLKDIPYFFNGPAPYIFAHRGGMSVRPEQTQLAFDNAVDYGLD GFETDVRLTKDEELIVFHDATVDRTTNGSGKVCDYTLKELKKLDAGFHFTDINGRHIYRG HQQARILTFDELLKMYPSKYINVDLKDAPSSYEGSIAPKKMYDIIKHHHAEKRVLVTSFH KEQNERFRAISNGEIATGASQHEVTEGVIKFILGLGYHYHPQADTFQMPIKFKGIPLSST HFIQWLNLLNIVPGYYGINSVDLMYDLYQKGVHTIVTDRPDLGKQFKSLLKQHTLS >gi|312979642|gb|ACRM01000023.1| GENE 188 194240 - 194674 309 144 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764796|ref|ZP_02171849.1| ribosomal protein S17 [Bacillus selenitireducens MLS10] # 14 142 16 145 146 123 43 6e-27 MYTEETLSILDEIEDLSDMIVQSKVYFNYREAQKKLKQDDEAHLLYQAFLKSKERYDEVM RFGRYHPDYQNVMLDTRRRKRAYEMLPNVMDYKSKEVQLQNLIDEVLTKIALSVSENVKI EVGNPFFKTDSKGCASGGTCNCSL >gi|312979642|gb|ACRM01000023.1| GENE 189 194693 - 195754 913 353 aa, chain - ## HITS:1 COG:SA0967 KEGG:ns NR:ns ## COG: SA0967 COG2340 # Protein_GI_number: 15926703 # Func_class: S Function unknown # Function: Uncharacterized protein with SCP/PR1 domains # Organism: Staphylococcus aureus N315 # 1 353 1 345 345 427 62.0 1e-119 MTKLVIKVLGIVFLITFLIYLFYSPRLKFDVLENPNNNNKISHSNQESHSVKKQTENPAP KNGIGTWIGKDINYLTNKYGQANRTYPVKGGYTDYIFKRKQQYYIVTTKHDEIKSVYATG EKAQTESLKINENASHIFEKTSINPDPSFKVNGKQYNFELSDEDIKTQTLIKYGNVYAQV YVDQQSNRIMGIRYLDKELLAFIKPYQLTDEEDISDDKFNNDRNNKNSLPYEQNPNQLIT LYEITNQMRDLKHIPPLKVNSDISHIASANLYEATGTEDVEFTEGALKSQLDNENIDFIA TSQNVGYDFNDVPTLIHSWMNSDIHRSRMLNKKYNEMGGEVMRNYYSLIFVQK >gi|312979642|gb|ACRM01000023.1| GENE 190 196097 - 196567 559 156 aa, chain - ## HITS:1 COG:SA0966 KEGG:ns NR:ns ## COG: SA0966 COG2322 # Protein_GI_number: 15926702 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 4 155 1 152 153 205 75.0 2e-53 MEHMSLPILPTISTSCIVISAILVAIGWWQIAHRHVNTHKKVMLWAAFFALTFFIIYSTR TIFIGNTDFGGPDSVRTYYKIFLIFHVNLATIGGVLGLVQIITAFKDKFKWHRRIGPVAS IIWFFTGITGVAVYLLLYVIYPGGETTSLIKATLGL >gi|312979642|gb|ACRM01000023.1| GENE 191 196588 - 197499 924 303 aa, chain - ## HITS:1 COG:SA0965 KEGG:ns NR:ns ## COG: SA0965 COG0109 # Protein_GI_number: 15926701 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Polyprenyltransferase (cytochrome oxidase assembly factor) # Organism: Staphylococcus aureus N315 # 1 303 2 304 304 483 85.0 1e-136 MSKEHTLSQPSSRVSFKELQQIIKMGLVQGNLIPAFAGAWLAIVMTNHSFLSSIPQILLM LIGSTLIMGGACALNNYYDQDIDKIMPSKQSRPTVNDRISDKHLLMLSFGMMLVGEACLF LLNVPSGVLGLFGIVGYVSYYSIWSKRHTTWNTVVGSFPGAVPPLIGWTAIDGQISLVAF ALFLVVFCWQPIHFYALAIKRSDEYSLANIPMLPSVKGFKRTRISMFIWLVLLLPLPFLL SSLGTTFVVLATLLNFGWIFIGLTTFKKNTDQTKWATKMFIYSLNYLVVFFALVVVISLI KMI >gi|312979642|gb|ACRM01000023.1| GENE 192 197738 - 198658 831 306 aa, chain + ## HITS:1 COG:SA0964 KEGG:ns NR:ns ## COG: SA0964 COG1612 # Protein_GI_number: 15926700 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Uncharacterized protein required for cytochrome oxidase assembly # Organism: Staphylococcus aureus N315 # 1 301 1 301 303 438 76.0 1e-123 MFNKRNLKWLSIVATIIMAMVQLGGALVTKTGSEDGCGASWPLCHGALLPQNLPIATIIE LSHRAVSGLSLIVVLWLAITAWKNIGYIKEVKPLAIISVAFLLIQALIGAAAVIWQQNSY VLALHFGISLISFSSVFVLMLIIFEVDKKYEADELFIKKPLRNLTWIMTGVVYVAIYTGA LVRHAKASLAYGSWPLPFNDLVPHTEQDWVQFAHRGMALITFCWIMITFIHAIKNYSENR TIRYGYTAAFILIILQVITGALSVMTHVNLIVALLHALCITILFGLIAYFILLMLRSIRS ENSKIK >gi|312979642|gb|ACRM01000023.1| GENE 193 198782 - 202231 4477 1149 aa, chain - ## HITS:1 COG:SA0963 KEGG:ns NR:ns ## COG: SA0963 COG1038 # Protein_GI_number: 15926699 # Func_class: C Energy production and conversion # Function: Pyruvate carboxylase # Organism: Staphylococcus aureus N315 # 1 1148 1 1148 1150 2053 87.0 0 MNHIKKLLVANRGEIAIRIFRAATELNIQTVAIYSNEDKNSLHRYKADESYLVGKDLGPA ESYLNIERIIEVAKRANVDAIHPGYGFLSENEEFARRCNEEGITFIGPHLDHLDMFGDKV KARTTAIKANLPVIPGTDGPIENFDAAKAFAKEAGFPLMIKATSGGGGKGMRIVREESEL EDAFHRAKSEAQKSFGNSEVYIERYIDNPKHIEVQVIGDEYGDIVHLYERDCSVQRRHQK VVEVAPSVGLPDELRERICQSALQLMKNIKYVNAGTVEFLVSGDEFFFIEVNPRVQVEHT ITEMITGIDIVKTQILVADGASLFDERIALPPQEEIQTLGYAIQCRITTEDPTNDFMPDS GTIIAYRSSGGFGVRLDAGDGFQGAEISPYYDSLLVKLSTHAITFKQAEEKMERSLREMR IRGVKTNIPFLVNVMRNEKFRSGDYTTKFIEETPELFDIAPTLDRGTKTLEYIGNVTING FPNVEKRMKPDYESTSIPQVSKKKIQSLYGTKQLLDEKGPSGVADWVKAQDDVLITDTTF RDAHQSLLATRVRTKDMLNIASKTAEVFKDSFSLEMWGGATFDVAYNFLKENPWERLEKL RKAIPNVLFQMLLRASNAVGYKNYPDNVIQKFVDESAKAGVDVFRIFDSLNWVDQMKVAN EAVQKAGKISEGTICYTGDILNPERSNVFTLDYYVKLAKELEREGFHILAIKDMAGLLKP RAAYELVGELKAAVNLPIHLHTHDTSGNGLLIYKQAIDAGVDIIDTAIASMSGLTSQPSV NSLYYALDGFKRNMRTDIQGLEELSHYWSTVRPYYVDFESDIKSPNTEIYQHEMPGGQYS NLSQQAKSLGLGERFNEVKDMYRRVNFLFGDIVKVTPSSKVVGDMALYMVQNDLDEQSII EQGYKLDFPESVVSYFKGEIGQPVNGFNKQLQDIILKGQQPLTERPGEYLKPVDFDEIRE QLQDKNYGEVTEQDIISYVLYPKVFDQFIQTRQQYGNLSLLDTPTFFFGMRNGETVEIEI ENGKRLIIKLETISEADENGNRTIYYVMNGQARRITIKDENIKTNANVKPKADKTNPNHI GAQMPGSVTEVKVSVGDEVKVNQPLLITEAMKMETTIQAPFNGVIKKVTVGNGDAIATGD LLIEIEKSE >gi|312979642|gb|ACRM01000023.1| GENE 194 202567 - 203799 1138 410 aa, chain - ## HITS:1 COG:SA0962 KEGG:ns NR:ns ## COG: SA0962 COG0772 # Protein_GI_number: 15926698 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Bacterial cell division membrane protein # Organism: Staphylococcus aureus N315 # 36 389 1 353 373 407 68.0 1e-113 MNNLKNIFRYIGRTSKFIDYPLLISYVILCFIGLVMVYSASMVAATKGTLTGGVEVSGTY FYNRQLIYVIMSFIIVFFISFMMNIKVFKQSKIQQWIMIIICVLLILTLLVGKNINGSKS WIDLGFMNLQASELLKIALILYISYVLSKKLPQLRGNLKIIKGPVILIILCLGLVLLQGD IGQTLLTLIIILSMFLFVGIGVKKIVKGPILYIILGFILIAGFFIFTGMMPEYLKARFST IYDPFSSSSGTGYHLSNSLMAIGNGGLFGRGLGNGIMKLGYLPEAHTDFIFAVICEELGL VGALLVIGLLFFIVFRAFVLATKTSSYFYKLICVGVASYIGSQTFVNLGGISATIPLTGV PLPFISFGGSSMISLSIAMGLLLLVARQIKVEEKRTIKNKKSKVDIPRQY >gi|312979642|gb|ACRM01000023.1| GENE 195 204045 - 204320 390 91 aa, chain - ## HITS:1 COG:SA0961 KEGG:ns NR:ns ## COG: SA0961 COG4838 # Protein_GI_number: 15926697 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 91 1 91 91 127 79.0 5e-30 MPKQMNINSEAYEQLNQDADRILHLIKVQMDNLTMPSCPLYEEVLDTQMFGLQKEVDFAV KLGLVNKEDGKSLMLRLEKELSKLHEAFTNV >gi|312979642|gb|ACRM01000023.1| GENE 196 204459 - 204944 585 161 aa, chain + ## HITS:1 COG:no KEGG:SH1841 NR:ns ## KEGG: SH1841 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 161 1 161 161 263 84.0 2e-69 MIQIKGDVKFPITLDSTTWIFDDRKVKIEDIENGIFEGTKPIKFEDNREWNRAILEGQTN PPTLNSEIKYRKRAVLEDSFAINMTPFFKNAEPLESATTIKLSNDTSSIEIPLELLPYLF FQFAKDGKRLYDDNSVDSFVYNPEENAYSYNFKYVTRIEVI >gi|312979642|gb|ACRM01000023.1| GENE 197 204946 - 205140 231 64 aa, chain + ## HITS:1 COG:SAS032 KEGG:ns NR:ns ## COG: SAS032 COG4896 # Protein_GI_number: 15926695 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 48 1 48 55 74 81.0 4e-14 MREVQCIICDTKVLIDERTVEAKRLRNNPIKTFMCSDCKSRLDTPRQRPNENRKFNLHFP NENL Prediction of potential genes in microbial genomes Time: Sun May 29 09:31:31 2011 Seq name: gi|312979641|gb|ACRM01000024.1| Staphylococcus hominis subsp. hominis C80 cont1.24, whole genome shotgun sequence Length of sequence - 251427 bp Number of predicted genes - 267, with homology - 252 Number of transcription units - 136, operones - 65 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 19 - 1863 2714 ## COG1217 Predicted membrane GTPase involved in stress response - Prom 1908 - 1967 6.4 + Prom 1867 - 1926 6.8 2 2 Tu 1 . + CDS 1962 - 2153 286 ## SH1844 hypothetical protein + Term 2175 - 2210 4.4 - Term 2153 - 2206 3.3 3 3 Tu 1 . - CDS 2222 - 3037 953 ## COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family - Prom 3091 - 3150 7.2 - Term 3142 - 3181 -0.3 4 4 Tu 1 . - CDS 3340 - 3498 129 ## SH2564 hypothetical protein - Prom 3643 - 3702 8.1 + Prom 3526 - 3585 6.1 5 5 Tu 1 . + CDS 3729 - 4340 750 ## COG4493 Uncharacterized protein conserved in bacteria + Term 4355 - 4392 5.5 + Prom 4440 - 4499 6.7 6 6 Tu 1 . + CDS 4520 - 5866 1553 ## COG1914 Mn2+ and Fe2+ transporters of the NRAMP family + Term 5874 - 5924 11.2 - Term 6152 - 6205 8.0 7 7 Op 1 . - CDS 6228 - 7346 1339 ## SH1849 hypothetical protein 8 7 Op 2 25/0.000 - CDS 7419 - 8492 1075 ## COG0687 Spermidine/putrescine-binding periplasmic protein 9 7 Op 3 36/0.000 - CDS 8489 - 9298 941 ## COG1177 ABC-type spermidine/putrescine transport system, permease component II 10 7 Op 4 30/0.000 - CDS 9304 - 10107 759 ## COG1176 ABC-type spermidine/putrescine transport system, permease component I 11 7 Op 5 4/0.026 - CDS 10100 - 11194 1331 ## COG3842 ABC-type spermidine/putrescine transport systems, ATPase components 12 7 Op 6 1/0.769 - CDS 11215 - 11802 568 ## COG1396 Predicted transcriptional regulators - Prom 11822 - 11881 5.1 13 7 Op 7 1/0.769 - CDS 11886 - 12158 386 ## COG4476 Uncharacterized protein conserved in bacteria - Prom 12204 - 12263 6.2 - Term 12185 - 12234 9.2 14 8 Op 1 30/0.000 - CDS 12302 - 13708 807 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 15 8 Op 2 24/0.000 - CDS 13712 - 15016 1782 ## COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes - Prom 15125 - 15184 9.1 16 8 Op 3 28/0.000 - CDS 15225 - 16202 1513 ## COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 17 8 Op 4 . - CDS 16206 - 17318 1488 ## COG1071 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit - Prom 17377 - 17436 6.5 - Term 17419 - 17454 4.1 18 9 Tu 1 . - CDS 17485 - 18114 916 ## SH1860 hypothetical protein - Prom 18144 - 18203 5.2 + Prom 18169 - 18228 5.8 19 10 Tu 1 . + CDS 18249 - 18800 880 ## COG0242 N-formylmethionyl-tRNA deformylase + Term 18809 - 18861 10.2 20 11 Op 1 7/0.000 + CDS 19157 - 19375 405 ## COG5503 Uncharacterized conserved small protein 21 11 Op 2 . + CDS 19375 - 21054 1961 ## COG0595 Predicted hydrolase of the metallo-beta-lactamase superfamily + Term 21058 - 21099 10.6 - Term 21040 - 21092 17.1 22 12 Tu 1 . - CDS 21093 - 21752 898 ## COG0569 K+ transport systems, NAD-binding component - Prom 21783 - 21842 8.3 23 13 Op 1 31/0.000 - CDS 21876 - 22892 1213 ## COG1294 Cytochrome bd-type quinol oxidase, subunit 2 24 13 Op 2 . - CDS 22892 - 24238 1459 ## COG1271 Cytochrome bd-type quinol oxidase, subunit 1 - Prom 24400 - 24459 10.4 + Prom 24348 - 24407 8.4 25 14 Tu 1 . + CDS 24434 - 24667 233 ## COG0695 Glutaredoxin and related proteins + Term 24683 - 24721 4.1 - Term 24670 - 24708 4.1 26 15 Op 1 25/0.000 - CDS 24720 - 26435 2146 ## COG1080 Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) 27 15 Op 2 . - CDS 26438 - 26704 473 ## COG1925 Phosphotransferase system, HPr-related proteins - Prom 26813 - 26872 9.5 - Term 26845 - 26898 7.3 28 16 Op 1 . - CDS 26974 - 27516 855 ## SH1876 hypothetical protein 29 16 Op 2 . - CDS 27582 - 28754 336 ## PROTEIN SUPPORTED gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative - Prom 28802 - 28861 9.7 - Term 28844 - 28897 8.1 30 17 Tu 1 . - CDS 28908 - 30203 1058 ## SH1878 hypothetical protein - Prom 30305 - 30364 8.7 + Prom 30215 - 30274 7.7 31 18 Tu 1 . + CDS 30356 - 30475 275 ## + Term 30506 - 30564 8.0 32 19 Op 1 4/0.026 + CDS 30934 - 31509 927 ## COG4721 Predicted membrane protein 33 19 Op 2 34/0.000 + CDS 31522 - 32925 1449 ## COG1122 ABC-type cobalt transport system, ATPase component 34 19 Op 3 . + CDS 32918 - 33727 906 ## COG0619 ABC-type cobalt transport system, permease component CbiQ and related transporters + Term 33838 - 33874 7.5 - Term 33826 - 33862 7.5 35 20 Op 1 17/0.000 - CDS 33877 - 35115 1476 ## COG0151 Phosphoribosylamine-glycine ligase 36 20 Op 2 10/0.000 - CDS 35151 - 36629 2003 ## COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) 37 20 Op 3 21/0.000 - CDS 36645 - 37211 686 ## COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN 38 20 Op 4 13/0.000 - CDS 37214 - 38242 850 ## PROTEIN SUPPORTED gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 39 20 Op 5 10/0.000 - CDS 38235 - 39719 1789 ## COG0034 Glutamine phosphoribosylpyrophosphate amidotransferase 40 20 Op 6 9/0.000 - CDS 39698 - 41887 2853 ## COG0046 Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain 41 20 Op 7 23/0.000 - CDS 41880 - 42551 832 ## COG0047 Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain 42 20 Op 8 15/0.000 - CDS 42553 - 42813 458 ## COG1828 Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component 43 20 Op 9 1/0.769 - CDS 42813 - 43517 870 ## COG0152 Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase 44 20 Op 10 29/0.000 - CDS 43521 - 44645 1259 ## COG0026 Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) 45 20 Op 11 . - CDS 44632 - 45114 727 ## COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase - Prom 45260 - 45319 8.2 + Prom 45206 - 45265 8.4 46 21 Tu 1 . + CDS 45325 - 46182 1158 ## COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase + Term 46212 - 46261 8.1 - Term 46198 - 46248 12.1 47 22 Tu 1 . - CDS 46271 - 47416 1640 ## COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 - Prom 47552 - 47611 10.1 + Prom 47386 - 47445 8.3 48 23 Tu 1 . + CDS 47684 - 48001 456 ## SH1900 hypothetical protein + Term 48016 - 48061 9.3 + Prom 48024 - 48083 8.5 49 24 Op 1 25/0.000 + CDS 48299 - 49411 1237 ## COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit 2 50 24 Op 2 20/0.000 + CDS 49411 - 51399 2475 ## COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 51 24 Op 3 16/0.000 + CDS 51389 - 51994 633 ## COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 52 24 Op 4 . + CDS 51991 - 52281 401 ## COG3125 Heme/copper-type cytochrome/quinol oxidase, subunit 4 + Term 52300 - 52364 20.1 + Prom 52327 - 52386 8.1 53 25 Tu 1 . + CDS 52418 - 53320 753 ## COG1957 Inosine-uridine nucleoside N-ribohydrolase + Term 53322 - 53358 1.1 - Term 53296 - 53356 12.7 54 26 Tu 1 . - CDS 53360 - 54529 1038 ## COG1680 Beta-lactamase class C and other penicillin binding proteins 55 27 Op 1 . + CDS 54889 - 56127 1220 ## COG1316 Transcriptional regulator 56 27 Op 2 . + CDS 56147 - 56617 579 ## SH1909 hypothetical protein + Term 56625 - 56665 4.2 + Prom 56632 - 56691 8.5 57 28 Op 1 . + CDS 56725 - 57144 483 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Prom 57211 - 57270 10.3 58 28 Op 2 . + CDS 57295 - 61338 4454 ## COG5632 N-acetylmuramoyl-L-alanine amidase + Term 61349 - 61389 4.5 - Term 61453 - 61509 12.1 59 29 Tu 1 . - CDS 61515 - 61934 328 ## COG1846 Transcriptional regulators - Prom 62089 - 62148 12.2 + Prom 62084 - 62143 13.4 60 30 Tu 1 . + CDS 62179 - 63378 1497 ## COG0436 Aspartate/tyrosine/aromatic aminotransferase + Term 63384 - 63423 8.1 - Term 63364 - 63418 14.5 61 31 Op 1 9/0.000 - CDS 63429 - 64247 1235 ## COG0447 Dihydroxynaphthoic acid synthase 62 31 Op 2 15/0.000 - CDS 64240 - 65043 805 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 63 31 Op 3 10/0.000 - CDS 65030 - 66700 1752 ## COG1165 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase 64 31 Op 4 . - CDS 66690 - 68057 1321 ## COG1169 Isochorismate synthase - Prom 68210 - 68269 5.1 + Prom 68081 - 68140 8.1 65 32 Tu 1 . + CDS 68239 - 69177 1433 ## COG1575 1,4-dihydroxy-2-naphthoate octaprenyltransferase + Term 69188 - 69226 6.4 66 33 Tu 1 . - CDS 69226 - 69777 535 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 69820 - 69879 6.5 67 34 Op 1 . + CDS 69921 - 70133 319 ## COG2314 Predicted membrane protein + Prom 70138 - 70197 3.1 68 34 Op 2 . + CDS 70223 - 70321 165 ## + Term 70330 - 70372 3.3 - Term 70311 - 70366 11.3 69 35 Tu 1 . - CDS 70389 - 70607 313 ## SAB0892 hypothetical protein - Prom 70633 - 70692 10.1 + Prom 70686 - 70745 15.2 70 36 Tu 1 . + CDS 70815 - 71399 362 ## COG4903 Genetic competence transcription factor + Term 71420 - 71474 11.1 + TRNA 71544 - 71618 88.3 # Asn GTT 0 0 + TRNA 71622 - 71713 60.1 # Ser GCT 0 0 - Term 71747 - 71785 -1.0 71 37 Tu 1 . - CDS 71802 - 72791 1333 ## COG0095 Lipoate-protein ligase A - Prom 72900 - 72959 8.7 72 38 Op 1 1/0.769 + CDS 72980 - 73156 338 ## COG4873 Uncharacterized protein conserved in bacteria 73 38 Op 2 . + CDS 73172 - 73774 612 ## COG1266 Predicted metal-dependent membrane protease + Term 73778 - 73820 9.0 - Term 73873 - 73927 5.2 74 39 Op 1 1/0.769 - CDS 73938 - 75296 1346 ## COG0168 Trk-type K+ transport systems, membrane components 75 39 Op 2 1/0.769 - CDS 75315 - 77174 2094 ## COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain - Prom 77326 - 77385 10.4 - Term 77347 - 77399 13.0 76 40 Tu 1 . - CDS 77408 - 78205 1285 ## COG0861 Membrane protein TerC, possibly involved in tellurium resistance - Prom 78231 - 78290 7.8 - Term 78319 - 78368 -0.1 77 41 Op 1 . - CDS 78515 - 80077 2009 ## COG4108 Peptide chain release factor RF-3 78 41 Op 2 . - CDS 80074 - 80331 218 ## SH1940 hypothetical protein 79 41 Op 3 . - CDS 80321 - 81805 1958 ## COG0769 UDP-N-acetylmuramyl tripeptide synthase - Prom 81929 - 81988 7.7 + Prom 82011 - 82070 8.7 80 42 Op 1 1/0.769 + CDS 82186 - 83364 928 ## COG0707 UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase 81 42 Op 2 . + CDS 83390 - 84535 1216 ## COG0477 Permeases of the major facilitator superfamily + Term 84541 - 84580 6.2 - Term 84518 - 84579 12.7 82 43 Op 1 . - CDS 84584 - 85093 716 ## COG1514 2'-5' RNA ligase - Prom 85117 - 85176 4.5 83 43 Op 2 . - CDS 85200 - 85955 694 ## COG2382 Enterochelin esterase and related enzymes - Prom 86112 - 86171 12.1 + Prom 85986 - 86045 14.1 84 44 Tu 1 . + CDS 86226 - 87311 1397 ## COG0628 Predicted permease + Term 87341 - 87382 8.1 - Term 87573 - 87614 7.4 85 45 Tu 1 . - CDS 87657 - 88427 1241 ## COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH) - Prom 88563 - 88622 8.1 - Term 88528 - 88560 -0.5 86 46 Op 1 1/0.769 - CDS 88633 - 90462 1679 ## COG0475 Kef-type K+ transport systems, membrane components 87 46 Op 2 1/0.769 - CDS 90487 - 91872 1760 ## COG2239 Mg/Co/Ni transporter MgtE (contains CBS domain) 88 46 Op 3 7/0.000 - CDS 91891 - 92757 205 ## PROTEIN SUPPORTED gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit 89 46 Op 4 6/0.000 - CDS 92757 - 93563 832 ## COG0061 Predicted sugar kinase 90 46 Op 5 . - CDS 93578 - 94207 778 ## COG2357 Uncharacterized protein conserved in bacteria 91 46 Op 6 . - CDS 94224 - 94571 390 ## SH1953 hypothetical protein - Prom 94677 - 94736 8.4 + Prom 94685 - 94744 6.2 92 47 Op 1 1/0.769 + CDS 94781 - 95356 669 ## COG4116 Uncharacterized protein conserved in bacteria + Prom 95367 - 95426 6.3 93 47 Op 2 3/0.154 + CDS 95450 - 95815 335 ## COG2346 Truncated hemoglobins 94 47 Op 3 . + CDS 95839 - 96636 739 ## COG2761 Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis + Term 96641 - 96682 6.3 - Term 96699 - 96732 2.1 95 48 Op 1 7/0.000 - CDS 96903 - 98711 2145 ## COG1164 Oligoendopeptidase F 96 48 Op 2 3/0.154 - CDS 98757 - 99734 639 ## COG4469 Competence protein - Prom 99782 - 99841 5.1 - Term 99777 - 99828 15.2 97 49 Op 1 . - CDS 99847 - 100566 988 ## COG4862 Negative regulator of genetic competence, sporulation and motility - Prom 100693 - 100752 8.1 - Term 100698 - 100735 1.0 98 49 Op 2 . - CDS 100765 - 101160 641 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 101357 - 101416 14.7 + Prom 101193 - 101252 11.4 99 50 Tu 1 . + CDS 101429 - 102418 1170 ## COG0180 Tryptophanyl-tRNA synthetase + Term 102426 - 102483 13.3 - Term 102421 - 102463 7.0 100 51 Op 1 2/0.256 - CDS 102469 - 104136 1939 ## COG4166 ABC-type oligopeptide transport system, periplasmic component 101 51 Op 2 44/0.000 - CDS 104164 - 105114 332 ## PROTEIN SUPPORTED gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 102 51 Op 3 44/0.000 - CDS 105101 - 106186 1157 ## COG0444 ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 103 51 Op 4 49/0.000 - CDS 106204 - 107268 1404 ## COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 104 51 Op 5 . - CDS 107268 - 108194 1203 ## COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components - Prom 108314 - 108373 16.4 + Prom 108266 - 108325 11.5 105 52 Tu 1 . + CDS 108426 - 108803 246 ## SH1971 hypothetical protein + Term 108815 - 108846 1.0 - Term 108794 - 108842 8.4 106 53 Op 1 4/0.026 - CDS 108857 - 110101 1822 ## COG0304 3-oxoacyl-(acyl-carrier-protein) synthase 107 53 Op 2 . - CDS 110115 - 111056 1330 ## COG0332 3-oxoacyl-[acyl-carrier-protein] synthase III - Prom 111214 - 111273 7.7 + Prom 111199 - 111258 13.4 108 54 Tu 1 . + CDS 111282 - 111482 404 ## SH1974 hypothetical protein + Term 111537 - 111596 15.6 - Term 111525 - 111581 12.5 109 55 Tu 1 . - CDS 111584 - 114193 1749 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 - Prom 114420 - 114479 8.9 - Term 114417 - 114483 2.2 110 56 Tu 1 . - CDS 114485 - 116299 1767 ## COG1835 Predicted acyltransferases - Prom 116362 - 116421 4.9 - Term 116670 - 116713 7.2 111 57 Tu 1 . - CDS 116784 - 117092 544 ## COG2151 Predicted metal-sulfur cluster biosynthetic enzyme - Prom 117272 - 117331 8.6 + Prom 117072 - 117131 5.2 112 58 Op 1 1/0.769 + CDS 117212 - 118033 912 ## COG0561 Predicted hydrolases of the HAD superfamily 113 58 Op 2 . + CDS 118116 - 119438 1361 ## COG0446 Uncharacterized NAD(FAD)-dependent dehydrogenases + Term 119443 - 119485 10.1 - Term 119423 - 119478 14.1 114 59 Op 1 . - CDS 119480 - 119881 620 ## SH1980 hypothetical protein - Prom 119916 - 119975 8.7 - Term 119955 - 119988 3.1 115 59 Op 2 . - CDS 120008 - 120913 1416 ## COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) - Prom 120941 - 121000 10.7 116 60 Op 1 8/0.000 - CDS 121040 - 124705 3536 ## COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 117 60 Op 2 1/0.769 - CDS 124698 - 128186 3387 ## COG3857 ATP-dependent nuclease, subunit B - Prom 128244 - 128303 6.7 - Term 128241 - 128298 13.1 118 61 Op 1 2/0.256 - CDS 128314 - 128880 569 ## COG0681 Signal peptidase I 119 61 Op 2 2/0.256 - CDS 128895 - 129419 399 ## COG0681 Signal peptidase I 120 61 Op 3 2/0.256 - CDS 129424 - 129735 249 ## COG0398 Uncharacterized conserved protein 121 61 Op 4 1/0.769 - CDS 129707 - 129997 194 ## COG0398 Uncharacterized conserved protein - Prom 130233 - 130292 10.6 - Term 130293 - 130332 4.3 122 62 Tu 1 . - CDS 130368 - 131699 2088 ## COG0166 Glucose-6-phosphate isomerase - Prom 131726 - 131785 8.3 + Prom 131755 - 131814 8.1 123 63 Op 1 . + CDS 131903 - 131998 70 ## 124 63 Op 2 16/0.000 + CDS 132026 - 133228 1665 ## COG0137 Argininosuccinate synthase 125 63 Op 3 1/0.769 + CDS 133221 - 134600 1678 ## COG0165 Argininosuccinate lyase + Term 134796 - 134867 6.0 + Prom 134805 - 134864 10.3 126 64 Tu 1 . + CDS 135071 - 136084 1176 ## COG0584 Glycerophosphoryl diester phosphodiesterase + Term 136101 - 136151 8.2 - Term 136088 - 136139 12.2 127 65 Op 1 2/0.256 - CDS 136160 - 137404 1797 ## COG0334 Glutamate dehydrogenase/leucine dehydrogenase - Prom 137445 - 137504 6.0 128 65 Op 2 1/0.769 - CDS 137512 - 138702 1511 ## COG4992 Ornithine/acetylornithine aminotransferase - Prom 138848 - 138907 8.1 - Term 138897 - 138948 15.6 129 66 Op 1 . - CDS 138971 - 140098 1497 ## COG1902 NADH:flavin oxidoreductases, Old Yellow Enzyme family - Prom 140206 - 140265 10.3 - Term 140215 - 140258 2.0 130 66 Op 2 . - CDS 140273 - 140656 203 ## PROTEIN SUPPORTED gi|30264941|ref|NP_847318.1| general stress protein 13 - Prom 140751 - 140810 9.0 131 67 Tu 1 . - CDS 140884 - 141486 827 ## COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family - Prom 141516 - 141575 5.2 + Prom 141459 - 141518 4.0 132 68 Tu 1 . + CDS 141555 - 141935 474 ## SH1998 hypothetical protein + Prom 141980 - 142039 10.9 133 69 Op 1 7/0.000 + CDS 142068 - 144470 2475 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 134 69 Op 2 16/0.000 + CDS 144463 - 144891 438 ## COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit 135 69 Op 3 21/0.000 + CDS 144891 - 145238 388 ## COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit 136 69 Op 4 12/0.000 + CDS 145225 - 146724 1574 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 137 69 Op 5 15/0.000 + CDS 146724 - 147203 493 ## COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit 138 69 Op 6 16/0.000 + CDS 147203 - 147493 478 ## COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit 139 69 Op 7 . + CDS 147471 - 147827 442 ## COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit + Term 147839 - 147877 6.3 + Prom 147849 - 147908 7.3 140 70 Tu 1 . + CDS 147937 - 149097 1163 ## SH2006 hypothetical protein + Term 149099 - 149161 21.0 - Term 149087 - 149148 20.2 141 71 Op 1 1/0.769 - CDS 149154 - 149528 535 ## COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism 142 71 Op 2 2/0.256 - CDS 149547 - 150866 1698 ## COG2056 Predicted permease - Prom 150959 - 151018 10.2 - Term 150977 - 151024 9.6 143 72 Op 1 1/0.769 - CDS 151071 - 152549 1520 ## COG0260 Leucyl aminopeptidase 144 72 Op 2 1/0.769 - CDS 152649 - 153857 1799 ## COG1252 NADH dehydrogenase, FAD-containing subunit - Prom 154085 - 154144 6.2 145 73 Op 1 1/0.769 - CDS 154185 - 154544 471 ## COG0316 Uncharacterized conserved protein 146 73 Op 2 . - CDS 154557 - 154802 242 ## COG4844 Uncharacterized protein conserved in bacteria - Prom 154826 - 154885 11.7 + Prom 154887 - 154946 8.8 147 74 Tu 1 . + CDS 155116 - 156180 1351 ## COG1252 NADH dehydrogenase, FAD-containing subunit 148 75 Tu 1 . - CDS 156272 - 156595 333 ## COG4837 Uncharacterized protein conserved in bacteria - Prom 156634 - 156693 6.3 + Prom 156596 - 156655 8.8 149 76 Tu 1 . + CDS 156699 - 156941 417 ## COG0694 Thioredoxin-like proteins and domains 150 77 Op 1 6/0.000 - CDS 157006 - 158166 1317 ## COG3966 Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) 151 77 Op 2 7/0.000 - CDS 158163 - 158399 483 ## COG0236 Acyl carrier protein 152 77 Op 3 6/0.000 - CDS 158415 - 159629 1219 ## COG1696 Predicted membrane protein involved in D-alanine export 153 77 Op 4 . - CDS 159626 - 161080 1538 ## COG1020 Non-ribosomal peptide synthetase modules and related proteins 154 77 Op 5 . - CDS 161095 - 161265 98 ## SAOUHSC_00868 hypothetical protein - Prom 161356 - 161415 13.0 - Term 161527 - 161579 9.1 155 78 Op 1 2/0.256 - CDS 161601 - 162389 1099 ## COG0647 Predicted sugar phosphatases of the HAD superfamily 156 78 Op 2 . - CDS 162389 - 162823 541 ## COG2445 Uncharacterized conserved protein - Prom 162891 - 162950 5.2 + Prom 162837 - 162896 7.9 157 79 Tu 1 . + CDS 162926 - 163192 427 ## SH2026 hypothetical protein + Term 163194 - 163257 21.2 - Term 163182 - 163245 20.6 158 80 Op 1 . - CDS 163246 - 163632 441 ## COG4470 Uncharacterized protein conserved in bacteria - Prom 163653 - 163712 9.1 - Term 163655 - 163704 4.1 159 80 Op 2 . - CDS 163836 - 164756 1127 ## COG0320 Lipoate synthase - Prom 164787 - 164846 11.4 160 81 Op 1 3/0.154 - CDS 164868 - 166199 1553 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases 161 81 Op 2 3/0.154 - CDS 166219 - 167046 883 ## COG0730 Predicted permeases 162 81 Op 3 . - CDS 167060 - 167908 988 ## COG1801 Uncharacterized conserved protein - Prom 167955 - 168014 5.4 163 82 Tu 1 . - CDS 168077 - 168211 79 ## - Prom 168327 - 168386 8.2 - Term 168398 - 168448 14.1 164 83 Op 1 6/0.000 - CDS 168475 - 169872 1706 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component - Prom 169934 - 169993 5.7 165 83 Op 2 19/0.000 - CDS 170034 - 170495 687 ## COG0822 NifU homolog involved in Fe-S cluster formation 166 83 Op 3 24/0.000 - CDS 170485 - 171726 1477 ## COG0520 Selenocysteine lyase 167 83 Op 4 41/0.000 - CDS 171766 - 173073 1876 ## COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component - Prom 173135 - 173194 9.3 168 83 Op 5 . - CDS 173196 - 173957 181 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 173988 - 174047 7.2 169 84 Tu 1 . + CDS 174281 - 175138 926 ## COG2035 Predicted membrane protein + Term 175160 - 175193 5.1 - Term 175137 - 175190 13.7 170 85 Tu 1 . - CDS 175202 - 175387 422 ## gi|228474312|ref|ZP_04059047.1| conserved hypothetical protein - Prom 175510 - 175569 9.9 + Prom 175469 - 175528 11.2 171 86 Tu 1 . + CDS 175562 - 175726 320 ## SH2044 hypothetical protein + Term 175761 - 175818 8.2 - Term 175749 - 175801 10.2 172 87 Op 1 22/0.000 - CDS 175816 - 176631 1096 ## COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen 173 87 Op 2 32/0.000 - CDS 176652 - 177347 981 ## COG2011 ABC-type metal ion transport system, permease component 174 87 Op 3 1/0.769 - CDS 177340 - 178365 1324 ## COG1135 ABC-type metal ion transport system, ATPase component - Prom 178389 - 178448 2.5 - Term 178393 - 178434 8.1 175 88 Op 1 2/0.256 - CDS 178609 - 178908 344 ## COG0526 Thiol-disulfide isomerase and thioredoxins 176 88 Op 2 . - CDS 178901 - 179287 387 ## COG1658 Small primase-like proteins (Toprim domain) - Prom 179339 - 179398 9.6 - Term 179371 - 179419 8.2 177 89 Op 1 4/0.026 - CDS 179423 - 179803 649 ## COG0509 Glycine cleavage system H protein (lipoate-binding) - Prom 179829 - 179888 8.9 178 89 Op 2 . - CDS 179896 - 180249 487 ## COG1393 Arsenate reductase and related proteins, glutaredoxin family - Prom 180347 - 180406 9.0 + Prom 180307 - 180366 13.5 179 90 Tu 1 . + CDS 180389 - 180712 492 ## COG0526 Thiol-disulfide isomerase and thioredoxins + Term 180713 - 180767 11.2 - Term 180706 - 180748 4.4 180 91 Op 1 1/0.769 - CDS 180750 - 181289 636 ## COG0778 Nitroreductase 181 91 Op 2 . - CDS 181359 - 182084 493 ## COG0710 3-dehydroquinate dehydratase - Prom 182116 - 182175 8.1 + Prom 182110 - 182169 8.3 182 92 Tu 1 . + CDS 182246 - 182668 633 ## COG1764 Predicted redox protein, regulator of disulfide bond formation + Term 182713 - 182751 4.1 + Prom 183010 - 183069 13.2 183 93 Tu 1 . + CDS 183120 - 183611 524 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases + Term 183835 - 183874 -0.9 184 94 Tu 1 . - CDS 183626 - 184225 690 ## COG0406 Fructose-2,6-bisphosphatase - Prom 184334 - 184393 7.2 + Prom 184267 - 184326 16.6 185 95 Tu 1 . + CDS 184420 - 184662 232 ## SH2060 hypothetical protein 186 96 Tu 1 . - CDS 184654 - 184857 299 ## SLGD_02025 hypothetical protein - Prom 185031 - 185090 8.3 187 97 Op 1 . + CDS 185312 - 185569 209 ## SH2061 hypothetical protein 188 97 Op 2 . + CDS 185592 - 185780 322 ## SH2062 hypothetical protein + Term 185784 - 185841 0.6 + Prom 185782 - 185841 4.0 189 98 Op 1 . + CDS 185862 - 186443 607 ## SH2063 hypothetical protein 190 98 Op 2 . + CDS 186517 - 187263 582 ## COG4195 Phage-related replication protein 191 99 Tu 1 . + CDS 187340 - 187624 385 ## SH2069 hypothetical protein + Term 187720 - 187763 -0.4 + Prom 187640 - 187699 6.8 192 100 Tu 1 . + CDS 187780 - 188007 219 ## gi|228474240|ref|ZP_04058975.1| conserved hypothetical protein + Term 188061 - 188115 -0.4 + Prom 188009 - 188068 9.4 193 101 Tu 1 . + CDS 188140 - 188856 814 ## gi|228474365|ref|ZP_04059100.1| conserved hypothetical protein + Term 188860 - 188905 5.0 + Prom 188862 - 188921 9.0 194 102 Tu 1 . + CDS 188992 - 189168 228 ## gi|228474253|ref|ZP_04058988.1| conserved hypothetical protein + Term 189175 - 189226 7.1 - Term 189161 - 189212 7.1 195 103 Tu 1 . - CDS 189223 - 190164 1035 ## COG1230 Co/Zn/Cd efflux system component + Prom 190323 - 190382 9.2 196 104 Tu 1 . + CDS 190576 - 191136 644 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 191167 - 191209 4.5 197 105 Tu 1 . - CDS 191311 - 191628 405 ## gi|167465906|ref|ZP_02330995.1| hypothetical protein Plarl_25618 - Prom 191769 - 191828 3.2 + Prom 192076 - 192135 7.1 198 106 Op 1 . + CDS 192249 - 192770 527 ## gi|258423473|ref|ZP_05686364.1| predicted protein 199 106 Op 2 . + CDS 192763 - 193266 585 ## SAAV_2066 hypothetical protein + Term 193272 - 193314 8.1 + Prom 193335 - 193394 7.6 200 107 Tu 1 . + CDS 193449 - 193937 485 ## Exig_2700 cell division protein ZipA + Term 193943 - 193976 -0.3 201 108 Op 1 . - CDS 193966 - 194376 331 ## SSP1609 hypothetical protein 202 108 Op 2 . - CDS 194386 - 194577 227 ## SSP1610 hypothetical protein 203 108 Op 3 . - CDS 194656 - 194949 261 ## - Prom 194978 - 195037 9.4 - Term 195012 - 195048 5.1 204 109 Op 1 . - CDS 195053 - 195388 335 ## Sca_1522 hypothetical protein 205 109 Op 2 . - CDS 195385 - 195711 370 ## Sca_1523 hypothetical protein 206 109 Op 3 . - CDS 195708 - 196244 351 ## COG5577 Spore coat protein 207 109 Op 4 . - CDS 196270 - 196743 473 ## Sca_1525 hypothetical protein - Prom 196958 - 197017 5.1 208 110 Op 1 . - CDS 197894 - 198367 599 ## 209 110 Op 2 . - CDS 198383 - 199000 765 ## SSP1937 hypothetical protein 210 110 Op 3 . - CDS 199014 - 199214 282 ## - Prom 199240 - 199299 5.4 211 111 Op 1 . - CDS 199304 - 199723 388 ## MGAS10270_Spy0554 phage protein 212 111 Op 2 . - CDS 199720 - 200004 202 ## gi|66395181|ref|YP_239458.1| ORF017 213 111 Op 3 . - CDS 199991 - 200794 720 ## SAK_0620 hypothetical protein - Prom 200863 - 200922 6.3 - Term 200801 - 200836 0.3 214 112 Op 1 . - CDS 200953 - 202584 1329 ## MGAS10270_Spy1941 bacteriophage resistance protein 215 112 Op 2 . - CDS 202644 - 202934 334 ## SH2095 hypothetical protein 216 112 Op 3 . - CDS 202941 - 203171 267 ## 217 112 Op 4 . - CDS 203173 - 203352 262 ## 218 112 Op 5 . - CDS 203365 - 203583 332 ## SH2100 hypothetical protein 219 112 Op 6 . - CDS 203583 - 203804 292 ## - Prom 203834 - 203893 10.8 + Prom 203815 - 203874 7.0 220 113 Op 1 . + CDS 203900 - 204484 544 ## PTH_1966 transcriptional regulator 221 113 Op 2 . + CDS 204494 - 205600 608 ## COG0582 Integrase 222 113 Op 3 . + CDS 205597 - 205782 102 ## + Prom 205824 - 205883 1.7 223 114 Tu 1 . + CDS 205929 - 206132 82 ## + Term 206134 - 206180 5.1 - Term 206024 - 206071 3.8 224 115 Op 1 10/0.000 - CDS 206157 - 206627 547 ## COG0691 tmRNA-binding protein 225 115 Op 2 4/0.026 - CDS 206652 - 209030 1657 ## PROTEIN SUPPORTED gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 226 115 Op 3 4/0.026 - CDS 209068 - 209808 1112 ## COG1647 Esterase/lipase - Prom 209946 - 210005 11.1 - Term 209977 - 210011 1.0 227 116 Op 1 . - CDS 210013 - 210246 443 ## COG1314 Preprotein translocase subunit SecG 228 116 Op 2 . - CDS 210314 - 210784 601 ## SH2108 hypothetical protein - Prom 210870 - 210929 6.5 - Term 210877 - 210918 7.2 229 117 Tu 1 5/0.000 - CDS 210958 - 212262 2004 ## COG0148 Enolase - Prom 212292 - 212351 12.9 - Term 212319 - 212385 15.2 230 118 Op 1 8/0.000 - CDS 212394 - 213911 2357 ## COG0696 Phosphoglyceromutase 231 118 Op 2 13/0.000 - CDS 213914 - 214675 1178 ## COG0149 Triosephosphate isomerase - Prom 214704 - 214763 7.0 232 118 Op 3 26/0.000 - CDS 214787 - 215977 1796 ## COG0126 3-phosphoglycerate kinase - Prom 216001 - 216060 6.1 - Term 216003 - 216051 6.6 233 119 Op 1 5/0.000 - CDS 216122 - 217129 1455 ## COG0057 Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 234 119 Op 2 . - CDS 217176 - 218195 940 ## COG2390 Transcriptional regulator, contains sigma factor-related N-terminal domain - Prom 218421 - 218480 8.5 + Prom 218383 - 218442 6.9 235 120 Tu 1 . + CDS 218466 - 218693 235 ## SH2115 hypothetical protein + Term 218699 - 218750 0.6 - Term 218687 - 218738 8.2 236 121 Tu 1 . - CDS 218746 - 219558 1021 ## SH2116 hypothetical protein - Prom 219626 - 219685 9.1 + Prom 219487 - 219546 10.4 237 122 Tu 1 . + CDS 219747 - 219917 187 ## + Prom 219938 - 219997 8.3 238 123 Op 1 . + CDS 220186 - 221085 1158 ## COG1090 Predicted nucleoside-diphosphate sugar epimerase 239 123 Op 2 . + CDS 221103 - 221285 244 ## gi|228474326|ref|ZP_04059061.1| conserved hypothetical protein + Term 221291 - 221326 5.1 - Term 221267 - 221323 17.0 240 124 Tu 1 . - CDS 221338 - 221925 986 ## COG0740 Protease subunit of ATP-dependent Clp proteases - Prom 222120 - 222179 78.3 + TRNA 222103 - 222177 48.3 # Arg CCG 0 0 - Term 222176 - 222220 7.3 241 125 Op 1 12/0.000 - CDS 222242 - 223186 1122 ## COG1481 Uncharacterized protein conserved in bacteria - Prom 223209 - 223268 6.4 242 125 Op 2 12/0.000 - CDS 223284 - 224270 1073 ## COG0391 Uncharacterized conserved protein 243 125 Op 3 1/0.769 - CDS 224267 - 225181 902 ## COG1660 Predicted P-loop-containing kinase - Prom 225216 - 225275 7.7 244 126 Op 1 3/0.154 - CDS 225335 - 226276 573 ## PROTEIN SUPPORTED gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 245 126 Op 2 3/0.154 - CDS 226340 - 227779 1007 ## COG0457 FOG: TPR repeat 246 126 Op 3 1/0.769 - CDS 227797 - 228276 456 ## COG0110 Acetyltransferase (isoleucine patch superfamily) 247 126 Op 4 10/0.000 - CDS 228276 - 229118 817 ## COG0682 Prolipoprotein diacylglyceryltransferase 248 126 Op 5 2/0.256 - CDS 229122 - 230057 1205 ## COG1493 Serine kinase of the HPr protein, regulates carbohydrate metabolism - Prom 230101 - 230160 10.4 - Term 230109 - 230169 13.3 249 127 Op 1 7/0.000 - CDS 230236 - 233076 3169 ## COG0178 Excinuclease ATPase subunit 250 127 Op 2 3/0.154 - CDS 233084 - 235069 2221 ## COG0556 Helicase subunit of the DNA excision repair complex - Prom 235133 - 235192 12.3 - Term 235205 - 235260 12.2 251 128 Op 1 2/0.256 - CDS 235338 - 235565 287 ## COG4897 Uncharacterized protein conserved in bacteria 252 128 Op 2 . - CDS 235571 - 236218 691 ## COG1896 Predicted hydrolases of HD superfamily 253 128 Op 3 . - CDS 236244 - 236408 80 ## 254 128 Op 4 1/0.769 - CDS 236427 - 237317 948 ## COG3942 Surface antigen - Prom 237471 - 237530 11.7 255 129 Op 1 . - CDS 237538 - 238536 1223 ## COG1186 Protein chain release factor B 256 129 Op 2 . - CDS 238577 - 238651 133 ## - Prom 238680 - 238739 5.6 257 130 Tu 1 . - CDS 238766 - 241303 3300 ## COG0653 Preprotein translocase subunit SecA (ATPase, RNA helicase) - Prom 241502 - 241561 7.5 - Term 241603 - 241654 9.8 258 131 Op 1 6/0.000 - CDS 241766 - 242341 808 ## PROTEIN SUPPORTED gi|15923742|ref|NP_371276.1| ribosomal subunit interface protein 259 131 Op 2 6/0.000 - CDS 242402 - 243079 337 ## COG1040 Predicted amidophosphoribosyltransferases 260 131 Op 3 4/0.026 - CDS 243072 - 244154 802 ## COG4098 Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) - Prom 244355 - 244414 7.7 - Term 244351 - 244404 -0.3 261 132 Tu 1 . - CDS 244461 - 245327 1104 ## COG1307 Uncharacterized protein conserved in bacteria - Prom 245360 - 245419 12.7 262 133 Tu 1 . + CDS 245468 - 246109 639 ## COG1739 Uncharacterized conserved protein + Term 246123 - 246160 2.2 - Term 246103 - 246156 14.1 263 134 Tu 1 . - CDS 246174 - 247247 1089 ## COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase - Prom 247315 - 247374 12.0 + Prom 247430 - 247489 14.1 264 135 Tu 1 . + CDS 247620 - 248690 864 ## COG2199 FOG: GGDEF domain + Term 248717 - 248756 0.1 + Prom 248740 - 248799 8.7 265 136 Op 1 12/0.000 + CDS 248898 - 249659 773 ## COG2966 Uncharacterized conserved protein 266 136 Op 2 1/0.769 + CDS 249676 - 250170 376 ## COG3610 Uncharacterized conserved protein 267 136 Op 3 . + CDS 250185 - 251414 1617 ## COG2195 Di- and tripeptidases Predicted protein(s) >gi|312979641|gb|ACRM01000024.1| GENE 1 19 - 1863 2714 614 aa, chain - ## HITS:1 COG:SA0959 KEGG:ns NR:ns ## COG: SA0959 COG1217 # Protein_GI_number: 15926694 # Func_class: T Signal transduction mechanisms # Function: Predicted membrane GTPase involved in stress response # Organism: Staphylococcus aureus N315 # 1 613 1 613 615 1108 93.0 0 MTNRREDVRNIAIIAHVDHGKTTLVDELLKQSGIFRENEHVDERAMDSNDLERERGITIL AKNTAINYKGTRINILDTPGHADFGGEVERIMKMVDGVVLVVDAYEGTMPQTRFVLKKAL EQNLKPVVVVNKIDKPSARPEAVVDEVLDLFIELEANDEQLDFPVVYASAVNGTASVDSE KQDENMQSLYETILDYVPAPIDNSDEPLQFQVALLDYNDYVGRIGIGRVFRGKMRVGDNV SLIKLDGTVKNFRVTKIFGFFGLKREEIEEAQAGDLIAVSGMEDINVGETVTPHDHQEAL PVLRIDEPTLEMTFKVNNSPFAGREGDFVTARQIQERLDQQLETDVSLKVTPTESPDTWV VAGRGELHLSILIENMRREGFELQVSKPQVILREIDGVLSEPFERVQCEVPSENAGAVIE SLGARKGEMLDMLTTDNGLTRLIFMVPARGMIGYTTEFMSMTRGYGIINHTFEEFRPRVK AQIGGRRNGALISMDQGQATAYAIIGLEDRGVNFMEPGTEVYEGMIVGEHNRENDLTVNI TKAKHQTNVRSATKDQTQTMNRPRILTLEEALEYINDDELVEVTPQSIRLRKKILNKAAR EKEAKRVKQMMQDQ >gi|312979641|gb|ACRM01000024.1| GENE 2 1962 - 2153 286 63 aa, chain + ## HITS:1 COG:no KEGG:SH1844 NR:ns ## KEGG: SH1844 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 63 1 63 63 96 95.0 3e-19 MEKPKSKGIFWILSIVAVIFLMLFSFSVGAGSIPMMILTFILFIATFGAGFTLKKKYREN NWL >gi|312979641|gb|ACRM01000024.1| GENE 3 2222 - 3037 953 271 aa, chain - ## HITS:1 COG:SA0958 KEGG:ns NR:ns ## COG: SA0958 COG0483 # Protein_GI_number: 15926692 # Func_class: G Carbohydrate transport and metabolism # Function: Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family # Organism: Staphylococcus aureus N315 # 1 271 1 272 275 384 66.0 1e-107 MSLYDFAKSLVLEAGNKVRIMMKEELNIETKSNPNDLVTNVDKATENYIYDAITHSYPEH RVIGEEGHGHDLTHVEGVVWVVDPIDGTLNFVHQKENFAISIGIYRNGKPYAGFVYDVMK DVLYHAKVGEGAFENKHSLSTIESTTLKKSLIGINPNWVIKPKMGPIFQDIVNDARSCRA YGSAALEIISVVKGQLAAYITPRLQPWDFAGGLIVLNEVGGVASNLLGEPLNISSANSVL VGNSNIHKEILENYLAPNTTTLIELHQRFKK >gi|312979641|gb|ACRM01000024.1| GENE 4 3340 - 3498 129 52 aa, chain - ## HITS:1 COG:no KEGG:SH2564 NR:ns ## KEGG: SH2564 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 51 72 122 171 70 66.0 2e-11 MEMLFIDPEDFNKSYGTIILQSLIQEDKIQYVDVNKDNQHVLKFYIKNGFKA >gi|312979641|gb|ACRM01000024.1| GENE 5 3729 - 4340 750 203 aa, chain + ## HITS:1 COG:SA0957 KEGG:ns NR:ns ## COG: SA0957 COG4493 # Protein_GI_number: 15926691 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 202 1 202 204 288 71.0 4e-78 MTQYTFTPKDFKAFDVEGLDERMEALNKYIRPQLHQLGDYFSEYFTSQTGETFYAHVAKH ARRSVNPPIDTWVAFAPNKRGYKMLPHFQIGLFRDQLFIMYGIMHEGKNKEERVKVFDKH FNALKQLPNDYQISLNHMKKDKQYIKDLSDTDLHQAIDRVKNVKKGEFFIARTLAPSDER LKPDETFLAFIKETFDEFLKLYE >gi|312979641|gb|ACRM01000024.1| GENE 6 4520 - 5866 1553 448 aa, chain + ## HITS:1 COG:SA0956 KEGG:ns NR:ns ## COG: SA0956 COG1914 # Protein_GI_number: 15926690 # Func_class: P Inorganic ion transport and metabolism # Function: Mn2+ and Fe2+ transporters of the NRAMP family # Organism: Staphylococcus aureus N315 # 5 446 7 448 450 662 81.0 0 MNHMSNKKQRSLDEINNTVDFNSNKSASQKFLAFLGPGLLVAVGYMDPGNWITSMQGGAQ FGYILLFIILVSSLAAMLLQSMTVRLGIATEMDLAQMTRHYLNRPLAIIFWIIAELAIIA TDIAEIIGSAIALDLLFNIPLIIGALITVLDVFLLLFIMKFGFRKIEAIVGTLIFTVLII FLFEVFISSPKVINILNGFIPHKDIVTNHSVLYIALGIIGATIMPHNLYLHSSIVQSRKY DRTNENDKAQAIKYATIDSNIQLSIAFIVNCLLLILGAALFYGVNADKLGGFYDLYHALK TQPLLGSVLGSIMSTLFAIALLASGQNSTITGTLSGQIVMEGFLRLSIPNWLRRLITRGL AVIPVIICLIVFKGNENKMEQLLVLSQVFLSIALPFSLIPLQLATSNKKLMGPFYNKNWI NFCSWSLIIILSLLNVYLIIETFKEFFA >gi|312979641|gb|ACRM01000024.1| GENE 7 6228 - 7346 1339 372 aa, chain - ## HITS:1 COG:no KEGG:SH1849 NR:ns ## KEGG: SH1849 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 372 1 394 400 379 67.0 1e-103 MSGERYTQIKRPVSRLTEKLLGWISWIFLLILTVITMFIALVSFSNDTSIQNLENSMNNN QLIQQILVNNSLNTTQFVIWLQNGIWAIIVYFIICLLISFLALISMNIRILSGILFLIAS IITLPLVLLFITLIIPIFFFITAIMMFARRSKIETVPAYGSTYDYPPYYNQRDDYDDRYY YEEEPTQYNDEEEYIEPPRKTKKSERRIRRKPSSDYNEREHDYEDYHHITQNNDEQDFND DIEEDKYNQYPKRAITSEYQQSSNDDTSGVLSRQRKYKYKSKNSMPNEVNDDENNVEKDL YIDKKEQKAQRKREKAELRAKKKEKRKAYNQRMKEKRKNQPSAVNQRRMNYEERKQILNK EENKEKHSVDQE >gi|312979641|gb|ACRM01000024.1| GENE 8 7419 - 8492 1075 357 aa, chain - ## HITS:1 COG:SA0953 KEGG:ns NR:ns ## COG: SA0953 COG0687 # Protein_GI_number: 15926687 # Func_class: E Amino acid transport and metabolism # Function: Spermidine/putrescine-binding periplasmic protein # Organism: Staphylococcus aureus N315 # 1 357 1 357 357 587 80.0 1e-168 MKQFFQLIIGAIVVGLICLGISHWFNSQDNTKTEKKVYVYNWGEYIDPDLIKKFEKETGI QVVYETFDSNEAMEAKIKNGGTHYDVAFPSEYTVQKLKREHLLEPLDHQKIPNIKNLDSD YMNMAYDPHNNYSIPYFFGTVGILYNKKAYPNEQFDSWNNLYQSKYKNDILLVDGAREII GLALNKLGYSLNDSNPVHIKQAEQDLQSLTPQVRGVVGDEITMMLQQNEGHIAVVWSGVA APLVQEGDTYDYVVPKEGSNVWFDNMVIPKTAQNKEGAYQFINFLLDAKNNKQNTEWVGY ATPNKAARNLLPNNIKNDHRFYPTQKEQKRLEVYKDLGEKTLGEYNESFLNFKMSLK >gi|312979641|gb|ACRM01000024.1| GENE 9 8489 - 9298 941 269 aa, chain - ## HITS:1 COG:SA0952 KEGG:ns NR:ns ## COG: SA0952 COG1177 # Protein_GI_number: 15926686 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component II # Organism: Staphylococcus aureus N315 # 1 266 1 267 269 384 83.0 1e-106 MKWYGKLYIGILLVILYLPIFFLMFYSFNSAGNMVHFEHFTLEHYQALFQDDHLMSVIFN TIAVALLSAAVSTIIGTFGAISIYYLRNKKFKLTLLTLNNVLMISSDVVIGASFLIMFTA LGHIFGLGLGFGTVLASHIAFCIPIVVILVLPQLYEMNHNMLNAARDLGATESQVLGRIL LPNLMPAIIGGFFMALTYSLDDFTVSFFVTGNGFSVLSVEVYAMARKGISMEINAISTIL FLAIVLGIIGYYALQNILKRRSAKRGAIE >gi|312979641|gb|ACRM01000024.1| GENE 10 9304 - 10107 759 267 aa, chain - ## HITS:1 COG:SA0951 KEGG:ns NR:ns ## COG: SA0951 COG1176 # Protein_GI_number: 15926685 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport system, permease component I # Organism: Staphylococcus aureus N315 # 1 267 1 265 265 339 81.0 4e-93 MRNLNKFLIIPYLLWMIIFIIIPVLLLVYFSFIDINGHFSFTNYRQVFSMKYLKMMWDSI FYAALITIITLIISYPAAYFIRSSKFQNIWLLILIIPTWINLLLKTYAFIGILSHEGMIN KMLGIMHIGPLNLLFTSGAFLLVASYIYIPFMILPIFNSMKSIPNNLLQASSDLGANTFT TFRKVILPLTKEGVMTGVQVTFIPALSLFMITRLIAGNKVINIGTSIEEQFLVIQNYGMG STIAIFLIVFMAFILIITKSKETNGRG >gi|312979641|gb|ACRM01000024.1| GENE 11 10100 - 11194 1331 364 aa, chain - ## HITS:1 COG:SA0950 KEGG:ns NR:ns ## COG: SA0950 COG3842 # Protein_GI_number: 15926684 # Func_class: E Amino acid transport and metabolism # Function: ABC-type spermidine/putrescine transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 364 1 364 364 586 81.0 1e-167 MESLLSFKKVTKKFDDTTILNNMNLDIESGYFYTLLGPSGCGKTTILKLIAGFEQPNEGQ IIYKNQSIEKLPANKRRVNTVFQDYALFPHLNVYENIAFGLRLKKFSKQEIDKEVKEALK LVKLTGYEQRHIDEMSGGQKQRVAIARAIVNKPEILLLDESLSALDLKLRTEMQYELREL QKRLGITFIFVTHDQEEALALSDYIFVMKDGEIQQFGTPTDIYDEPVNRFVADFIGESNI VDGTMVKDFVVNIYGQDFECVDARIPSGKKIEVVIRPEDISLVESTQGLFTATVDSMLFR GVHYEICCIDEKGYEWVIQSTKKTTIGSQVGLFFEPEAIHIMVPGETEEEFDKRIESYED IEHA >gi|312979641|gb|ACRM01000024.1| GENE 12 11215 - 11802 568 195 aa, chain - ## HITS:1 COG:SA0949 KEGG:ns NR:ns ## COG: SA0949 COG1396 # Protein_GI_number: 15926683 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 17 195 1 179 179 250 74.0 1e-66 MFDNSKQDTAFFRWLVMQIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSM ETFLSILEVLGTTPSDFFKEKAKEKVLYKKSERTIYDEYDRGYILNWVVPSSNENEMEPL IITIKPGSSYKSFEPSESDTFIYCLEGCVTLTLGKERYQAYEGDVFYFRANELHQLHNNS ENEVKILIVATASYL >gi|312979641|gb|ACRM01000024.1| GENE 13 11886 - 12158 386 90 aa, chain - ## HITS:1 COG:SA0948 KEGG:ns NR:ns ## COG: SA0948 COG4476 # Protein_GI_number: 15926682 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 88 1 88 91 96 59.0 9e-21 MEYQYPLDLDWSNEEMVDVIKFFNQIENYYEKSIIGTELMKQYKKFKQIVPGKAEEKQIF KEFEEKSGYNSYKVIQEVKKHPDQENFSKH >gi|312979641|gb|ACRM01000024.1| GENE 14 12302 - 13708 807 468 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 11 466 5 457 458 315 38 1e-84 MVVGDFPIETDTIVIGAGPGGYVAAIRAAQLGQKVTIVEKGDLGGVCLNVGCIPSKALLH ASHRFVEAQHSENLGIIAESVSLKFDKVQEFKQSVVNKLTGGVEGLLKGNKVDIVRGEAY FVDENSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFEFGKRVIDSTGALNLQEVPGKLV VVGGGYIGSELGTAFANFGSEVTILEGAKEILGGFEKQMVQPVKKGMKEKGVEIITEAMA KNAEETENGVKVTYEAKGEEKTIEADYVLVTVGRRPNTDELGLEELGLKFADRGLLEVDK QSRTSIKNIYAIGDIVPGLPLAHKASYEGKVAAEVISGQASEVDYIGMPAVCFTEPELAQ VGYTEAQAKEEGLDFKASKFPYAANGRALSLDDTTGFVKLITLKEDDTVIGAQVAGNGAS DIISELGLAIEAGMNAEDIALTVHAHPTLGEMTMEVAEKAIGLPIHTM >gi|312979641|gb|ACRM01000024.1| GENE 15 13712 - 15016 1782 434 aa, chain - ## HITS:1 COG:SA0945 KEGG:ns NR:ns ## COG: SA0945 COG0508 # Protein_GI_number: 15926680 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes # Organism: Staphylococcus aureus N315 # 1 434 1 430 430 694 88.0 0 MAFEFRLPDIGEGIHEGEIVKWFVSAGDTIEEDDVLAEVQNDKSVVEIPSPVSGTIEEVV VEEGTVAVVGDVIVKIDAPDAEEMQFKGHDDDDASSKEEEPAKEEAKTEETPAASTSQDE KVDENRRIKAMPSVRKYAREKGVNIKAVSGSGKNGRITKEDIDNHLNGGGAQAATASNES AAASTSEDTSAVQTQSVPEGDFPETTEKIPAMRKAIAKAMVNSKHTAPHVTLMDEIDVQD LWDHRKKFKEVAAEQGIKLTFLPYVVKALVSALKKYPALNTSFNEESGEIVHKHYWNIGI AADTERGLLVPVVKNADRKSIFQISDEINELAVKARDGKLTSQEMSGATCTISNIGSAGG QWFTPVINHPEVAILGIGRIAQKPIVKDGEIVAAPVLALSLSFDHRQIDGATGQNAMNHI KRLLNNPELLLMEG >gi|312979641|gb|ACRM01000024.1| GENE 16 15225 - 16202 1513 325 aa, chain - ## HITS:1 COG:SA0944 KEGG:ns NR:ns ## COG: SA0944 COG0022 # Protein_GI_number: 15926679 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit # Organism: Staphylococcus aureus N315 # 1 325 1 325 325 571 91.0 1e-163 MAQMTMVQAINNALKTELQNDENVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAE SGIGGLALGLTVEGFRPVMEIQFLGFVFEVFDEVAGQIARTRFRSGGSKTAPVTIRTPFG GGVHTPELHADNLEGILAQSPGIKVVIPSGPYDAKGLLLSSIRSNDPVVYLEHMKLYRSF REEVPEEEYTIEIGKANVKKEGNDITLIAYGAMVQESEKAAEELEKEGYSVEVIDLRTVQ PIDIDTLVASVEKTGRAVVVQEAQRQAGVGATVAAELAERAILSLEAPIARVAAADTVYP FTQAENVWLPNKNDIIEQAKATLEF >gi|312979641|gb|ACRM01000024.1| GENE 17 16206 - 17318 1488 370 aa, chain - ## HITS:1 COG:lin1044 KEGG:ns NR:ns ## COG: lin1044 COG1071 # Protein_GI_number: 16800113 # Func_class: C Energy production and conversion # Function: Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit # Organism: Listeria innocua # 1 370 1 371 371 546 73.0 1e-155 MAPKLQAQFDAVKVLNDTQSKFEMVQILDVDGNVVNEDLVPDLTDEQLVELMERMVWTRI LDQRSISLNRQGRLGFYAPTAGQEASQLASQYALEKEDFILPGYRDVPQLIWHGLPLTDA FLFSRGHFKGNQFPEGVNAFSPQIIIGAQYIQTAGVAFGIKKRGKKAVAITYTGDGGSSQ GDFYEGINFASAYKAPAIFVIQNNNYAISTPRSKQTAATTLAQKAIAVGIPGIQVDGMDA LAVYQATKEARDRAINGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWEKKDPLVR FRKFLENKGLWSEEKENEVIERAKDDIKKAIKEADNTPKQTVLDLMDIMYEDMPQNLAEQ YEIYKEKESK >gi|312979641|gb|ACRM01000024.1| GENE 18 17485 - 18114 916 209 aa, chain - ## HITS:1 COG:no KEGG:SH1860 NR:ns ## KEGG: SH1860 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 207 1 207 207 196 78.0 5e-49 MKLRKTIVVAAASTLLLAGCTTDKKEVKAYDDNVQKAFDKEQSINEVSKKLNSLEEKKQG LYKKANSNDSNTRSKAADDVLDNIDKREKTFDKEVSILKNSEKQFKKGDSHINDIKNDNK RKEVKQLDDAIKNKYKTHDDYAKAYRNVLSKEKDLFELVKQDGVTQSQVDEKNNALNKAQ ENFKKKFQAYAKAMNTVNKEKQDVDHLIS >gi|312979641|gb|ACRM01000024.1| GENE 19 18249 - 18800 880 183 aa, chain + ## HITS:1 COG:SA0942 KEGG:ns NR:ns ## COG: SA0942 COG0242 # Protein_GI_number: 15926677 # Func_class: J Translation, ribosomal structure and biogenesis # Function: N-formylmethionyl-tRNA deformylase # Organism: Staphylococcus aureus N315 # 1 183 1 183 183 300 79.0 1e-81 MLTMKDIIRDGHPTLREKAKDVNLPLSEEDKNTLRDMREFLINSQDDEIAKKYGLRSGVG LAAPQINISKKMIAVYLPDDGEGKSYDYMLVNPKVISHSVQHAYLPTGEGCLSVDENIPG LVHRHYRTTIKAYDIDGNEVKLRLKGYPAIVFQHEIDHLNGIMFYDYIDKDHPLTPLPDS VEV >gi|312979641|gb|ACRM01000024.1| GENE 20 19157 - 19375 405 72 aa, chain + ## HITS:1 COG:SA0941 KEGG:ns NR:ns ## COG: SA0941 COG5503 # Protein_GI_number: 15926676 # Func_class: S Function unknown # Function: Uncharacterized conserved small protein # Organism: Staphylococcus aureus N315 # 17 72 1 56 56 68 78.0 3e-12 MAVFKVFFQHNKDEVIVRENTNTIYVEGETEEQVRRYLKDRNYNIEFITKLEGAHLEYEK EHSDHFNVENAQ >gi|312979641|gb|ACRM01000024.1| GENE 21 19375 - 21054 1961 559 aa, chain + ## HITS:1 COG:SA0940 KEGG:ns NR:ns ## COG: SA0940 COG0595 # Protein_GI_number: 15926675 # Func_class: R General function prediction only # Function: Predicted hydrolase of the metallo-beta-lactamase superfamily # Organism: Staphylococcus aureus N315 # 1 559 1 559 565 1065 93.0 0 MKQLHSNEVGVYALGGLGEVGKNTYAVEYKDEIVIIDAGIKFPDDNLLGIDYVIPDYTYL EQNQDKIVGLFITHGHEDHIGGVPYLLKQINVPIYGGPLALGLIRNKLEEHNLLRNASLN EITEDSVIKSKHFEISFYLTTHSIPEAYGVVVDTPEGKIVHTGDFKFDFTPVGAPANIAK MAELGKEGVLCLLSDSTNALVPDFTLSEREVGQNVDKIFRNCKGRIIFATFASNIYRVQQ AVEAAIKYNRKIVTFGRSMENNIKIGMELGYIKAPPETFVEPNKINNIPKHELLILCTGS QGEPMAALSRIANGTHKQIKIIPDDTVVFSSSPIPGNTKSINRTINALYKAGADVIHSKI SNIHTSGHGSQGDQQLMLRLIQPKYFLPIHGEYRMLKAHGQTGIDCGVKEENVFIFDIGD VLALTHDSARKAGRIPSGNVLVDGSGIGDIGNVVIRDRKLLSEEGLVIVVVSIDFNTNKL LSGPDIISRGFVYMRESGQLIYDAQRKIKTDVISKLNSNDDIQWHQIKSSIIETLQPYLY EKTARRPMILPVIMKVNEE >gi|312979641|gb|ACRM01000024.1| GENE 22 21093 - 21752 898 219 aa, chain - ## HITS:1 COG:SA0939 KEGG:ns NR:ns ## COG: SA0939 COG0569 # Protein_GI_number: 15926674 # Func_class: P Inorganic ion transport and metabolism # Function: K+ transport systems, NAD-binding component # Organism: Staphylococcus aureus N315 # 1 217 1 217 220 357 90.0 9e-99 MEKEYVVIGLGRFGGSIVRELNALDMDVMAIDRDEARVNEYSEIATHAVVADTTDEAVMK SLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHP ERDMGRRIAHNVASASVLDYLELADEHSLVELKVSEKLTGQTIRDLDIRAQFGINIIAIK RGREIIVSPDPNMNIEIGDIMIMIGHDNDLNRFEKKIVR >gi|312979641|gb|ACRM01000024.1| GENE 23 21876 - 22892 1213 338 aa, chain - ## HITS:1 COG:SA0938 KEGG:ns NR:ns ## COG: SA0938 COG1294 # Protein_GI_number: 15926673 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 2 # Organism: Staphylococcus aureus N315 # 1 338 1 338 339 400 77.0 1e-111 MDYTGIGITVLWTFLFFYIIVASIDFGAGFLTLHTKLTGEEKKINHLIERYLNPVWEVTN VFFVFFFVGFVGFFPDSALYLGTVLLVPGSIALILISIRSSFYAFEHYGQDNKLPWIFLY GITGLLIPAALATVLTISEGGYINEQGNHFDLDWVQLLLSPFAWSVVFLAIVSVLYISSG FLTYYASKAKDKVAYKFMRQWFMFWGPPMIIISLFVFLSLRIQNSNHFYNAITHYWWMFA ISFIFFLIAGILNMIKKYHGLAFIMVILQMAFAFYGYGMSKLPYILYPYIKISDSGVNSS MGLALTIVFILGLLLLLPSLILLLRLFVFDKQYVEGKK >gi|312979641|gb|ACRM01000024.1| GENE 24 22892 - 24238 1459 448 aa, chain - ## HITS:1 COG:SA0937 KEGG:ns NR:ns ## COG: SA0937 COG1271 # Protein_GI_number: 15926672 # Func_class: C Energy production and conversion # Function: Cytochrome bd-type quinol oxidase, subunit 1 # Organism: Staphylococcus aureus N315 # 1 447 1 447 453 688 78.0 0 MNSVEISRFLTGMTLGVHIIFATIGVGMPLMFAIAEFLGIKKKDPKYIALAKRWSKGYTI TVAVGVVTGTIIGLQLSLVWPTFMKMGGHVIALPLFMETFAFFFEAIFLSIYLYTWNRFK NQWIHFLISLPVIIGGSFSAFFITSVNSFMNTPAGFEMKKGKMVNVQPFEAMFNSSFLVR AFHVVATAGMTMAFILAAIAAFKLLKNKYSEDAPYHKKALKMTMILGFIQTLLSMLAGDL SAKFLHKVQPEKLAAYEWHFDTHSKADLVFFGVLNEKTQEVSGAIKIPGLLSFLADNNIN TKVKGLNEFPKNDLPPLIVHYFFDLMVSMGIFCFIVSGIFILALMIKKLRPIITKKVMLY AVLLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVSQAATQAGGITLVTILFGLLYFVLL FTSAYVLLRMFRNKPAREDIDKVIGGQE >gi|312979641|gb|ACRM01000024.1| GENE 25 24434 - 24667 233 77 aa, chain + ## HITS:1 COG:SA0936 KEGG:ns NR:ns ## COG: SA0936 COG0695 # Protein_GI_number: 15926671 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Glutaredoxin and related proteins # Organism: Staphylococcus aureus N315 # 1 76 1 76 77 99 65.0 1e-21 MSKIIIYTQDDCPPCNFLKNYLTEHHINFIEKNIKYPSYRKEMLEYDAFSTPFILLNEEP MYQVDLEKINKIFDIQL >gi|312979641|gb|ACRM01000024.1| GENE 26 24720 - 26435 2146 571 aa, chain - ## HITS:1 COG:SA0935 KEGG:ns NR:ns ## COG: SA0935 COG1080 # Protein_GI_number: 15926670 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) # Organism: Staphylococcus aureus N315 # 1 571 1 572 572 947 85.0 0 MSKLIKGIAASDGVAIAKAYLLVEPDLSFTNENITDTDAEIKKFRNALEASKIELTKIRN NAEKSLGADKAAIFDAHLLVLDDPELIQPIEDKIANEKVSAPEALNEVTTQFITIFESMD NEYMRERAADIRDVSKRVLAHLLGVDLPNPSMIDESVVIIGNDLTPSDTAQLNKEFVQGF VTNIGGRTSHSAIMSRSLEIAAVVGTKSITHEVKQGDMVIVDGITGDVIIDPTEDELIAY QNKRERFFEDKKELQKLRDAETVTVDGEHAELAANIGTPDDLYGVMENGAEGIGLYRTEF LYMGRDQMPTEDEQFEAYKKVLETMKDKRVVVRTLDIGGDKELPYLNLPKEMNPFLGYRA IRLCLDQQDIFRTQLRALLRASAYGKLNIMFPMVATIKEFRDAKAILLEEKDKLTSEGQE VADDIEVGIMVEIPSTAALADIFAKEVDFFSIGTNDLIQYTMAADRMSERVSYLYQPYNP AILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQING LSKNEMTELANRAINCATQDEVKELVHHISK >gi|312979641|gb|ACRM01000024.1| GENE 27 26438 - 26704 473 88 aa, chain - ## HITS:1 COG:SA0934 KEGG:ns NR:ns ## COG: SA0934 COG1925 # Protein_GI_number: 15926669 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, HPr-related proteins # Organism: Staphylococcus aureus N315 # 1 88 1 88 88 142 94.0 2e-34 MEQKSYVIVDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAE ITIYADGSDEQDAIQAISEVLSKEGLTE >gi|312979641|gb|ACRM01000024.1| GENE 28 26974 - 27516 855 180 aa, chain - ## HITS:1 COG:no KEGG:SH1876 NR:ns ## KEGG: SH1876 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 180 1 180 180 264 80.0 1e-69 MGIIHKITNGVTDKVGKKVLDIEEINEKDILPKNEEEIAQRREKAKAVVKKKSLLSSGMS VVPIPGLDFGIDIKLMKDIIEDINKIYGLDQKQVNSLGEDVKERILSAAAIQGSSMIGEK VTSGALKLIIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKLGQDHIEKCEKVLRDII >gi|312979641|gb|ACRM01000024.1| GENE 29 27582 - 28754 336 390 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|223476703|ref|YP_002580685.1| ribosomal protein L11 methyltransferase, putative [Thermococcus barophilus MP] # 32 389 33 393 396 134 27 5e-30 MKIATLNKGKETKYLNQYPLVEEEDIFQHDHLKEGDLFNIVTENNQYIATAYVGRQHKGL GWVITYSQEEDINITFFENLFKKALEEREYYYNIEGTNAFRLFNAEGDGVGGLTIDNYNG HLLIQWYSKGIYKFRYIIIEAIKKVFKFESVFEKMRFKDTEYTGGHVLGKTPEFPIVIEE NFTFYNVDLNDGLMTGIFLDQKEVRKKLRDYFAENRSVLNLFSYTGAFSVVASKNAKVTT SVDLANRSRTLTEENFGLNGVDPKSQYIYVMDTFNFYNYAARHGKQYDTIVIDPPSFARN KKKTFSVQKNYDDLINGALDVLAPDGTLLLCTNSSAFSLKAFKNVIKKTLEQANVEYEIE EVMGLPKDFKTHPHYKPSKYLKAVFINIKH >gi|312979641|gb|ACRM01000024.1| GENE 30 28908 - 30203 1058 431 aa, chain - ## HITS:1 COG:no KEGG:SH1878 NR:ns ## KEGG: SH1878 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 431 1 431 431 620 87.0 1e-176 MSFLKKHAEIIYSYLIGIVSLFTGLIILINLPLIHKLKNKDKIDLKIHNIWDFLNAFFSE IIRVMSRFIGNFPVVSAVIIILFGILVILIGYTLFRTTKYDYDISIFFLVIGILYFLITI TLMTQVYGFWAIIFVIPFVIHTGYIVYKDELYQENRKVHYLWIIISYGISYLITQMSLYG KIDANEIEPIDILSVNTFFIIMWLLAQAAIWNFLFLRRALPLTKEELGEEEPELSRTQKG NVSTQSKVHFKQLQDKTSEYAHKTRRSVDLDKIRSKRDKFKSKFKNIVDIEEDDIPKWMR RPKWIKPAYVEIFCGFILFLFTFIEFNNRNALFVSGEWELSQTQYVIEWITLLILLFIII IYIATTFTHFLRGKFYYLQLFMISILFFKLLTEFINIMIHGLLLSIFITPTLIIMLIPVI IAFSLQLKEKP >gi|312979641|gb|ACRM01000024.1| GENE 31 30356 - 30475 275 39 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTHEDAKKAKEYEEKLKEQKEEKTDDIEQTKQDVQNTLD >gi|312979641|gb|ACRM01000024.1| GENE 32 30934 - 31509 927 191 aa, chain + ## HITS:1 COG:SA0929 KEGG:ns NR:ns ## COG: SA0929 COG4721 # Protein_GI_number: 15926663 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 191 1 191 191 281 79.0 4e-76 MSKGLKLSEILVTVLIAVIFAIIYNLWWLPYNLAQVAGIHLEQLTYGIWFMAAIVAYLII PKPGIALIAEFAAGAGETIVMGKFDIPTIVYAILQGLACEVVFAIFKYKSRSLMVAMLAG LVTALVSFPVDYFYGYLNEVAGWNLLLFIIFRAISGIVLSGILSYLIVKALDQTGVTKLF RPASQKDYDNL >gi|312979641|gb|ACRM01000024.1| GENE 33 31522 - 32925 1449 467 aa, chain + ## HITS:1 COG:SA0928 KEGG:ns NR:ns ## COG: SA0928 COG1122 # Protein_GI_number: 15926662 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 467 1 466 466 672 72.0 0 MLKVKNLRLKYPNGDRKIFDNLNIEIKDKEKVLLLGPSGSGKSTLLNVLSGIVPNLIELP MKYDELDIDPNSGVIFQDPDTQFCMPKVYEELAFVLENQQVPREDMDEQIKKALASVDLD VDNSTFVNNLSGGMKQKLAIVETILQKADTLFLDEPTAMLDVQATADLWQRLIQLWTDQT VLIVEHKVEHIWHHVDRVILMNYDGEIIADNTPEYILKHCESLLTEFGVWHPHAWDYAPI RTDLTPQTSKTLFKFQNGQIIRSKNTLFEVSELNIHPGEWITITGKNGAGKTTLLESMMQ LVKYNGTMFYENRLLKKIKDAAQNMYLVYQNPELQFITNSVYDEINIHYNHLDKAKSKEE TEHLLKLLHLEKVKHHHPFEISTGQKRRLSVATALSSKAEIVLLDEPTFGLDSHNTFQLI KLFEERVKQGQTIVMVTHDPEIIHRYPTRRLVVENHKLLEMAGESNV >gi|312979641|gb|ACRM01000024.1| GENE 34 32918 - 33727 906 269 aa, chain + ## HITS:1 COG:SA0927 KEGG:ns NR:ns ## COG: SA0927 COG0619 # Protein_GI_number: 15926661 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, permease component CbiQ and related transporters # Organism: Staphylococcus aureus N315 # 1 267 1 267 268 320 71.0 3e-87 MFERWKKRHTLVDDVNIITKLILGVLLFIFIIFVHNFDYMIYITLLMFIFLLSFNGTAFK VIAAFLSATILFALLSSLFMILYGDGTHMLFEWGIIHISTESIVRGLHLSLRTITVSMFG VLIALTSQIVMIFYSLMQHLKVKPKIAYAFMAAIRMVPLIFTSFIQLRRSLKMRYQMIDA SNYRGFKRIKHLLIPVLSQNIRRAHQLSVAMESKGFKDGPRTYYYKAPFSYKDILFIGMT IALLIIAFYLSQYFPITGIKDARVSEMLE >gi|312979641|gb|ACRM01000024.1| GENE 35 33877 - 35115 1476 412 aa, chain - ## HITS:1 COG:SA0926 KEGG:ns NR:ns ## COG: SA0926 COG0151 # Protein_GI_number: 15926660 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylamine-glycine ligase # Organism: Staphylococcus aureus N315 # 37 412 1 377 379 553 70.0 1e-157 MNVLVIGAGGREHALVSKLHQSPLIEKLYAIPGNDAMTHLAEVHTEIAETDHEAILQFVH QHHIEWVIIGPEQPLIDGLSNKLRDNHVKVFGPNKEAAQIEGSKSFAKRLMEKYDIPTAD YKEIDNKTEALNYVNECELPIVVKKDGLAAGKGVIIANTRDEAIEAVEVLYPQEDGKVVF EQFLEGEEFSLMTFINGDYAVPFDCIAQDHKRAYDNDEGPNTGGMGAYCPVPHISNDVLE RTNKDIAQPIARALKEEGYDYFGLLYIGAILTKEGPKVIEFNARFGDPEAQVLLSRLESD LMAQIVALDRKEPIRFQWIDDYVVGVMLASKGYPGSYEKGAEVSGFEVNNHYFVSGLKKE NDTFLTSGGRVVLAIGKGKTIQQAQKDAYGNVEKIKSDQLFYRKDIGNKALK >gi|312979641|gb|ACRM01000024.1| GENE 36 35151 - 36629 2003 492 aa, chain - ## HITS:1 COG:SA0925 KEGG:ns NR:ns ## COG: SA0925 COG0138 # Protein_GI_number: 15926659 # Func_class: F Nucleotide transport and metabolism # Function: AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) # Organism: Staphylococcus aureus N315 # 1 492 2 493 493 828 85.0 0 MKKAIISVSNKSGIVEFAKSLTQLDYELYSTGGTKRALEEANVTVKSVSELTQFPEIMDG RVKTLHPAVHGGILADRNKPEHLEQLSEQHIDLIDMVVVNLYPFQQTVANPDVTEDDAIE NIDIGGPTMLRAAAKNFKHVTTIVHPSDYNEVIQRIKEHRLDESYRKSLMIKVFEHTNEY DHAIVSFFKGDSEELRYGENPQQSARFVRTSNSKHTIAGAKQLHGKALSFNNIKDADSAL ALVKKFKEPAAVAVKHMNPCGVGIGTDIEIAFKNAYDADNQSIFGGIIALNRTVTKDLAE TLHSIFLEVVIAPKFDKEALDILTQKKNIRLLEIDMTIDNREEEFVSVSGGYLVQDKDNY EVSKEEMKVVTDVEPTDAQWEAMLLGWKVIPSVKSNAIILSNNKQTVGIGAGQMNRVGAA KIALERAIEINDNVVMISDGFFPMDDTVELAAKHGIKAIIQPGGSIKDQDSIDMANKHGI AMVTTGMRHFKH >gi|312979641|gb|ACRM01000024.1| GENE 37 36645 - 37211 686 188 aa, chain - ## HITS:1 COG:SA0924 KEGG:ns NR:ns ## COG: SA0924 COG0299 # Protein_GI_number: 15926658 # Func_class: F Nucleotide transport and metabolism # Function: Folate-dependent phosphoribosylglycinamide formyltransferase PurN # Organism: Staphylococcus aureus N315 # 1 188 1 188 188 286 73.0 2e-77 MTKVAIFASGSGSNFENIVSKVDKGQLNNIEITSLYTDHHDAYCIERAKQLKVMVHINEP KDFENKGEYEQKLIQLLHSEEVEWIILAGYMRLVGPDLLNAYEGKILNIHPSLLPKYKGK DAIGQAFNSGDKETGSTVHYVDSGMDTGEIIEQRKCDINPDDTKETLEERVKQLEYELYP SVIAKVIK >gi|312979641|gb|ACRM01000024.1| GENE 38 37214 - 38242 850 342 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149378138|ref|ZP_01895857.1| Ribosomal protein S7 [Marinobacter algicola DG893] # 2 335 7 339 354 332 50 1e-89 MSKAYEQSGVDIHAGYEAVERMSSHVQRTMRKEVLGGLGGFGATFDLSQLNMKTPVLVSG TDGVGTKLKLAIDHNKHDTIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIV KGVSDGCEATHTALIGGETAEMGEMYHEGEYDLAGFAVGAVEKDEYIDGSEVEEGQIIIG LASNGIHSNGYSLVRKLIEESGINLNDSFDGSTYLDIFLAPTQLYVKPILTLKEKVKIKG MNHITGGGFYENIPRGLPKGLAAKIDTQSFPTPKVFEWLQQQADIETSEMYNVFNMGIGY TVIVNKEDVYKTLDVLKEQDIAAYQIGEIVKSNDAPIYLEGV >gi|312979641|gb|ACRM01000024.1| GENE 39 38235 - 39719 1789 494 aa, chain - ## HITS:1 COG:SA0922 KEGG:ns NR:ns ## COG: SA0922 COG0034 # Protein_GI_number: 15926656 # Func_class: F Nucleotide transport and metabolism # Function: Glutamine phosphoribosylpyrophosphate amidotransferase # Organism: Staphylococcus aureus N315 # 1 494 1 494 494 881 88.0 0 MFNYSGLNEECGVFGIWNHSEAAQLTYMGLHSLQHRGQEGAGIVVSDEDTLKGERGLGLL TEAIKEPQLNKLKDGNHAIGHVRYATSGNKGIENIQPFLYHFYDMSVAICHNGNLINAQT LRQYLEKHGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRQIKGGFTFAILTKDALYG AVDPNAIRPLVVGKMQDGTYILASETCAIDVLGAEYVQDIHAGEYVVINHNGIEVKSYTS HTNTAISAMEYIYFARPDSTIAGKNVHAVRKVSGKKLAQESPAQADMVIGVPNSSLSAAS GYAEEIQLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVEGKDIILVDDSIV RGTTSKRIVRMLKDAGANKIHVRIASPEFMFPSFYGIDVSTTAELISANKSPEEICEYIG ADSLAYLSVEGLIESIGLDFDAPYSGLCVESFTGDYPAGLFDYEENYLNNLSTRQKEYID NHKHYFDREGNIHV >gi|312979641|gb|ACRM01000024.1| GENE 40 39698 - 41887 2853 729 aa, chain - ## HITS:1 COG:SA0921 KEGG:ns NR:ns ## COG: SA0921 COG0046 # Protein_GI_number: 15926655 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain # Organism: Staphylococcus aureus N315 # 1 729 1 729 729 1246 86.0 0 MSKFIEPSIEEIKLEKLYQDMGLSDEEYNKVREILGREPNFTEVGIFSVMWSEHCSYKHS KPFLKQFPTTGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGII RDIVSIGARPINLLNSLRFGELSVKQNQRLLKGVVRGIGGYGNCIGIPTTAGEIEFDERY DGNPLVNAMCVGVIDHDMVQKGTAKGEGNSVIYVGLKTGRDGIHGATFASEELTEESESK RPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLVLHLDQ VPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTNTDRFVLK YEDEVYADIPVDALADEAPVYILEGEEKEYNTSKNDYSEINVQDVFKKLLKHPTIASKHY LYEQYDQQVGANTIIKPGLQSSVVRVEGTNKAIASTIDGEARYVFNQPYEGGKMVVAEAY RNLIAVGATPLAMTDCLNYGSPEKKDIYQQLIDSTKGMAEACEVLKTPVVSGNVSLYNET RGTSIFPTPVVGMVGLIEDIQYLNDFHPETGHTLYLVGETRNDFGGSQIEKLLYSKVNHE YEEIDLGDEVAKGEAIKTSIRNGIASHVQTVGKGGLLITLAKISAYYNLGLEAKVELSDA QLFSETQGRYVVAVKEGQTLDVDGAIKIGELTDVDEFKVSNTTSTITEKVSDIKAIWEGA ISECLTTVD >gi|312979641|gb|ACRM01000024.1| GENE 41 41880 - 42551 832 223 aa, chain - ## HITS:1 COG:SA0920 KEGG:ns NR:ns ## COG: SA0920 COG0047 # Protein_GI_number: 15926654 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain # Organism: Staphylococcus aureus N315 # 1 223 1 223 223 405 86.0 1e-113 MKFAVLVFPGSNCDRDMYNAAIKTGAEAEYVDYRETSLNGFDGVLIPGGFSFGDYLRSGA MASVAPIISEVKRFASEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEKLKVVN NQTPFTNLYGENEIVVYPVAHGEGHYYCTDDMYNELVENNQIILTYEDNPNGSHEHIAGI VNKAGNVCGMMPHPERALETLLGTDSGVKLFEAMVNSWREQNV >gi|312979641|gb|ACRM01000024.1| GENE 42 42553 - 42813 458 86 aa, chain - ## HITS:1 COG:SA0919 KEGG:ns NR:ns ## COG: SA0919 COG1828 # Protein_GI_number: 15926653 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component # Organism: Staphylococcus aureus N315 # 1 86 1 87 87 127 88.0 6e-30 MKTIELHITLQPQVLDTQGQALNRAVHDLGYKQVNDIRVGKVLYMTVDEATDEAVNNIIT TLSEKLFANTVIEEYSYKIVDEKENA >gi|312979641|gb|ACRM01000024.1| GENE 43 42813 - 43517 870 234 aa, chain - ## HITS:1 COG:SA0918 KEGG:ns NR:ns ## COG: SA0918 COG0152 # Protein_GI_number: 15926652 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazolesuccinocarboxamide (SAICAR) synthase # Organism: Staphylococcus aureus N315 # 1 234 1 234 234 345 79.0 4e-95 MSLRYEGKAKRVFSTETVHQLRVEYKDEVTAGNGAKKDKMQGKGRLNNRITSIIFEYLNK HGIESHFIKQLSETEQLVKEVKIIPLEVVVRNIATGSITKRLGFEKGHVFDEPLVEFFYK NDDLNDPLITDDHVKLLHIANDEEIKTLKDMAKNINKVLIQLMNEMDLRLVDFKVEFGKT ENGDILLADEISPDTCRIWDKYSDTNFDKDVYRNDTGSLIDTYQTFLDKLEELK >gi|312979641|gb|ACRM01000024.1| GENE 44 43521 - 44645 1259 374 aa, chain - ## HITS:1 COG:SA0917 KEGG:ns NR:ns ## COG: SA0917 COG0026 # Protein_GI_number: 15926651 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) # Organism: Staphylococcus aureus N315 # 1 372 1 372 374 554 73.0 1e-157 MNFNRLKFGATIGIIGGGQLGKMMAQSAQKMGFNVACLDPNPDSPCKSVADVFITAEYDD EEALNKLGQQSDVITYEFENISAQQLKQLTQQFNIPQSYQAIELLQDRLTEKQTLESAGT KIVPYVSLKDEKDLNQAIETLSYPFIVKTRFGGYDGKGQILVKNDSNIEEAKALVSKHEC VAEKFLDLDREVSLTVTIGNQNQIAYFPLQENEHRNQILFKTIIPARCDKEQEARKEVNK IIEKVHFVGTFTVEFFIDKSNHLYVNEIAPRPHNSGHYTIEACDYSQFDTHILAVTGQDL PQEIEILKPAVMMNLLGRDLDLLEDKFGDHPEWHVHIYGKTERKPDRKMGHMTILTNNVN ETENEMLKQFKGRE >gi|312979641|gb|ACRM01000024.1| GENE 45 44632 - 45114 727 160 aa, chain - ## HITS:1 COG:SA0916 KEGG:ns NR:ns ## COG: SA0916 COG0041 # Protein_GI_number: 15926650 # Func_class: F Nucleotide transport and metabolism # Function: Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase # Organism: Staphylococcus aureus N315 # 1 160 1 160 160 203 80.0 1e-52 MKVAVIMGSSSDWKIMQESCAMLEQFEIPYEKKVVSAHRTPKLMFDFASEARTNGYDVII AGAGGAAHLPGMVASMTTLPVIGVPIESKSLKGLDSLLSIVQMPGGIPVATTAIGKSGAK NAGILAARILSIGNDSVRKHLEQYEQSLVDKVGEMQDELQ >gi|312979641|gb|ACRM01000024.1| GENE 46 45325 - 46182 1158 285 aa, chain + ## HITS:1 COG:SA0915 KEGG:ns NR:ns ## COG: SA0915 COG0190 # Protein_GI_number: 15926649 # Func_class: H Coenzyme transport and metabolism # Function: 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase # Organism: Staphylococcus aureus N315 # 1 285 1 285 286 466 89.0 1e-131 MVAKILDGKHIAKDYRQGLQDQVQTLKAKGYTPKLSVILVGNDGASQSYVNSKKKAAEKI GMISEIIHLAEDTSEEDVLKELDRLNNDDSVSGILVQVPLPKQVSEQKILEAINPEKDVD GFHPSNIGKLYIDEQTFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ ANATVTILHSRTKDMHSHLKNADVIVSAVGKPGLVTKDDVKEGAVIVDVGNTPDENGKLK GDVEFEEVKEIAGAITPVPGGVGPLTITMVLNNTLLAEKMRRGIE >gi|312979641|gb|ACRM01000024.1| GENE 47 46271 - 47416 1640 381 aa, chain - ## HITS:1 COG:SA0231_2 KEGG:ns NR:ns ## COG: SA0231_2 COG1018 # Protein_GI_number: 15925943 # Func_class: C Energy production and conversion # Function: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 # Organism: Staphylococcus aureus N315 # 151 381 1 231 231 269 55.0 7e-72 MLTEQEKGIVKETVPVLQERGTEITSYFYNRMFQQHPELKNMFNQTNQQKGFQSTALAQS VLAAAVNIEHLENILPVVKEIAYKHCALQVPPAGYDIVGENLIEAIKAVLGLEDSHPIIQ TWKKAYQEIADVFIQVEKDIYSKMLWEGFQPFKIEKIEQLSSDIKAFTVVSDQYDLSQFT PGEYITVDVSSEKMPYRAKRHYSIVSGDNNHLTFAVKRDVSTDHEGEVSTILHDELKEGN DINLSAPVGPFGVVNQEQPQLFIGAGIGVTPLVSMFDEVAENGSHAQFIQVTGDVNDTPF TSHLRDISKRYDKAKYELYDRQAKGYLTKETLENYVNNDSEVYVCGSAKFIQSVIEVLKE IGISQEHIHYETFVPKLSVSV >gi|312979641|gb|ACRM01000024.1| GENE 48 47684 - 48001 456 105 aa, chain + ## HITS:1 COG:no KEGG:SH1900 NR:ns ## KEGG: SH1900 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 105 1 105 105 166 88.0 2e-40 MNKLIQSLSALGVSATLVTPNLSAEATTNHTPQLKGVNDIVIEKGQDYNVLNGISAYDKE DGDLTHKITVDGHLDTSKVGTYEVRYNVIDSEGAEESSTRYIKVK >gi|312979641|gb|ACRM01000024.1| GENE 49 48299 - 49411 1237 370 aa, chain + ## HITS:1 COG:SA0913 KEGG:ns NR:ns ## COG: SA0913 COG1622 # Protein_GI_number: 15926647 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 2 # Organism: Staphylococcus aureus N315 # 1 370 1 366 366 573 78.0 1e-163 MSKFKSLLLMFGTLILLSGCSNLEVFNAKGPVASSQKFLIIYSIIFMLVIVAVVLTMFAV FIFKYSYNKNDESGKMHHNSLIETIWFVVPILIVIALAIPTVKTLYDYEKPPESKEDPLV VYAVSAGYKWFFAYPEQKVETVNTLTIPKNRPVVFKLQSMDTMTSFWIPQLGGQKYAMTG MTMNWTLKADQTGTFRGRNSNFNGEGFSRQTFKVHSVDQKDFDAWVKDAKSKKTISQDEF DKQLLPSTPNKELTFNGTHMAFVDPAADPEYIFYAYKRYNYTQKDPNFVAEKDLYKDVTD KPQKPARKVTVTNVNYPRHGMKPMILGNNDPYDSEFKDEETHNAKEMEKINKGAKDENAS KADNDHGGEH >gi|312979641|gb|ACRM01000024.1| GENE 50 49411 - 51399 2475 662 aa, chain + ## HITS:1 COG:SA0912 KEGG:ns NR:ns ## COG: SA0912 COG0843 # Protein_GI_number: 15926646 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidases, subunit 1 # Organism: Staphylococcus aureus N315 # 1 662 1 662 662 1168 91.0 0 MNFPWDQLLVKGNWMITMAQIGAPFLIIGLIAVITYFKLWKYLYKEWFTSVDHKKIGLMY LISAVLMFVRGGIDALLLRTQLAIPDNTFLESNHYNEIFSTHGVIMIIFMAMPFIFGLWN VVVPLQIGARDVAFPVMNNISFWLFFVGMILFNLSFIVGGSPAAGWTNYAPLAGEFSPGP GVNYYLVAIQISGIGTLMTGINFFVTILRCKTPTMKFMQMPMFTVTTFITTLIIILAFPV FTVVLALMTADRVFGTHFFTVADGGMPMLWANFFWVWGHPEVYIVILPAFGIYSEIIPTF ARKRLFGHQSMVWATAGIAFLSFLVWVHHFFTMGNGALINSFFSISTMLIGVPTGVKLFN WLLTLYKGRITFESPMLFSLAFIPNFLLGGVTGVMLAMASADYQYHNTYFLIAHFHYTLV TGVVFACLAGLIFWYPKMMGYKLNEKLNKWAFWLFMIGFNVCFLPQFILGLDGMPRRLYT YMPSDGWWLLNLISTIGALMMAVGFLFLVVSIIYSHIKSPREATGDNWDGLGRTLEWSTA SAIPPKYNFAITPDWNDYDTFVDMKEHGRHFLDNHNYKDIHMPNNTHTGVFMGIFMLVGG FFLIFQSIIPFLICVAGIFGTMIYQSFVQDHGYHIPASEVAENEARLREARIKEREAVGH ES >gi|312979641|gb|ACRM01000024.1| GENE 51 51389 - 51994 633 201 aa, chain + ## HITS:1 COG:SA0911 KEGG:ns NR:ns ## COG: SA0911 COG1845 # Protein_GI_number: 15926645 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 3 # Organism: Staphylococcus aureus N315 # 1 201 1 201 201 322 87.0 3e-88 MSHDTNTIDSRTHEGQLNKLGFWIFLTAEFALFGTLFATLLTLQHGGSYGGKMTTELFEL PLVLIMTFALLISSYTCGIAIYYLRKEEKGKMMFWMILTVILGLIFVGFEIYEFAHYASE GVTPKVGSYWSSFFILLGTHGAHVSLGIVWIICLLIQVATRGLNKFNAPKLFIVSLYWHF LDVVWIFIFTAVYMIGMVYSG >gi|312979641|gb|ACRM01000024.1| GENE 52 51991 - 52281 401 96 aa, chain + ## HITS:1 COG:SA0910 KEGG:ns NR:ns ## COG: SA0910 COG3125 # Protein_GI_number: 15926644 # Func_class: C Energy production and conversion # Function: Heme/copper-type cytochrome/quinol oxidase, subunit 4 # Organism: Staphylococcus aureus N315 # 1 96 1 96 96 121 84.0 3e-28 MNTIVKHTVGFIASIVLTLLAVFVTLYTNMTFHAKTTIIFGFAFIQAALQLLMFMHLTEG KDGRLQSAKVIFAIIITLITVIGTYWVMQGGHSSHL >gi|312979641|gb|ACRM01000024.1| GENE 53 52418 - 53320 753 300 aa, chain + ## HITS:1 COG:yaaF KEGG:ns NR:ns ## COG: yaaF COG1957 # Protein_GI_number: 16128024 # Func_class: F Nucleotide transport and metabolism # Function: Inosine-uridine nucleoside N-ribohydrolase # Organism: Escherichia coli K12 # 1 273 1 272 304 256 48.0 3e-68 MSLPIIIDTDPGIDDAAAIALALSHTKFDVKMISTVNGNVGVEKTTANALKLKSFFNSEV PIHRGASQPLISEIQDASHIHGESGMDGYQFPTISTSDLASSHAVEAMNEILSHSNEPIT LVTLGPLTNIALLFNTYPECKNYVKEIIIMGGSTGRGNVTPLAEFNIYCDPEAAHIVFNA GLPLTMIGLDLARQSLFTHSYLDTLKDENKTTQMLYHIFQHYRGEDFKEGIKLYDAFTIL YLLDPKSYEIKEADVQIELQGALTRGATVVDFESSYPNCSVVVSSINEHYKTIFLNTLKN >gi|312979641|gb|ACRM01000024.1| GENE 54 53360 - 54529 1038 389 aa, chain - ## HITS:1 COG:SA0909 KEGG:ns NR:ns ## COG: SA0909 COG1680 # Protein_GI_number: 15926643 # Func_class: V Defense mechanisms # Function: Beta-lactamase class C and other penicillin binding proteins # Organism: Staphylococcus aureus N315 # 7 388 9 389 397 369 53.0 1e-102 MKKRIEIITLTIVLIILVTLFIIFLMKVYKTNHKDTEYNKVNDNKTYLQKRDYHVSKVPH LKTIEVEEPHIKNIDEYLKAIHFNGAVTVLENGKLKLNKGYGYQNFQHKTKNSPNTMYLI GSAQKFTTGLILKKLENENKVNINDPLTKYLPWFKTTKNITLKDLMLHRSGLYKFEASPK TKSLDGAVHAIQARGIDEKFYHKHLYNDANYLVLAQVIEVVTHKSYAANYYDDLAQPFSL QHSAFFNEKPYKKHMATGYKMIDGKLTAMKPNILDQYYGAGNLYMTTYDMAHLVNNFKNN NIFSESVSIPLTQQLGTTAYPESYRYGFYVTPQYNRINGVFYGQIFTVYFNQHYVIVLAS NIGDNSKVTNEKRISYIYHKILNQHSYYQ >gi|312979641|gb|ACRM01000024.1| GENE 55 54889 - 56127 1220 412 aa, chain + ## HITS:1 COG:SA0908 KEGG:ns NR:ns ## COG: SA0908 COG1316 # Protein_GI_number: 15926642 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 404 1 405 405 469 65.0 1e-132 MNRFLKYFMMLLTLLLIVVPVIFIVNLYHHSENALQSSYNKSDAKRHSTLRNSKMNPSKN AISILFLGIDDNEGRRKNGQTTEHSRTDSMILATLNPNKQQIRLLSIPRDTISYIPKVGY YDKITHAHAYGGPIAAMDTVEATLNIPVDYYVRINMDAFVQAVDKLGGIYYDVPYDLDEP NTDDTGRIKVKKGYHKLNGDEALAVARTRHHDSDLKRGERQMDLIKILFQKAKNLDSYDR LDELVQIVGKNAKHNLTTEEIKSIASIYLSDNIDFKKSQLKGDNDYLNGIYYYNPSIKSI LKYSNLLRSDLGLSKITDKNDLLDERVINYYGNLVPLTPIDSFLLENNQKDTTTDENSIL SNGTNPSTQSQSEQNPSDSTMDQQNQMSNQVNSNNSDNSNDFNNQNEINQLY >gi|312979641|gb|ACRM01000024.1| GENE 56 56147 - 56617 579 156 aa, chain + ## HITS:1 COG:no KEGG:SH1909 NR:ns ## KEGG: SH1909 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 156 1 156 156 295 94.0 4e-79 MSRKTYEKIANINGMFNVLEQQIIHSQDMALFRSEFFYVNHEHRENYEALLVYYGENSVN PIVNGACYIVALPEIFNKVDVFESDLPFSWVYDENGITETMQSISIPLQYLIAAALEVTD VNLFRPSGFTMGMNNWNIAQLRIFWQYCAIVRQEAL >gi|312979641|gb|ACRM01000024.1| GENE 57 56725 - 57144 483 139 aa, chain + ## HITS:1 COG:SA0906 KEGG:ns NR:ns ## COG: SA0906 COG0454 # Protein_GI_number: 15926640 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 137 1 138 144 135 52.0 2e-32 MFKEVINQSMLSDCFEIRKSVFVEEQGVPLESELDIFENTSTHIIGYYNDHPFACARFRP YEDGIKVERVAILKPYRNKGFGKTLMNTIESIGKQKHHHKLILNAQLQAKPFYEKLGYIS IGLPFQEENIAHIKMYKII >gi|312979641|gb|ACRM01000024.1| GENE 58 57295 - 61338 4454 1347 aa, chain + ## HITS:1 COG:SA0905_2 KEGG:ns NR:ns ## COG: SA0905_2 COG5632 # Protein_GI_number: 15926639 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylmuramoyl-L-alanine amidase # Organism: Staphylococcus aureus N315 # 367 1181 1 849 849 760 54.0 0 MSKKFSFKFPSMIALTLFGAAFTTHHAEASENKQNAANNVIDDQQNIENANVAKHQVSNA AQNISGVQTYQDPTLVKSNTTNNTYNTYTYDAKLDNLNQSASSQNNSTRSNTNDTVKNSD TISNDQSDNTKHNNNEVATTSTTSTDSTKLVTSEDSNHKLNSNRITTETPSTHNENAQVS NTHKLNTDEPKTTLNNVENQNNSISKAQSSTTVVNNKQQKVDNNATTTNNDNNKVSLSST TESDSTSKNLSNTSDNTTVNNEDTTLKKNNAQTSPMHNTLKVRAYSTALNNTHVNNKATT STQSNDASVSDSTSSVHKGIGGKGGPATVSTYSTTSSLPKYVPQVKSSINNYIRTNNLKA PSIEEHYTSYFPKYGYRNGVGKPEGIVVHDTANDNSTIEGEINYMRNNYTNAFVHAFVDG NRIIETAPTDYLSWGAGPYGNNRFINVEIVHTHDYASFARSMNNYADYAATQLQYYGLKP DSAEYDAKGTVWTHYAISRYLGGTDHADPHAYLSNHNYSYDELYDLINEKYLIKMGKVAP WGTTSTNNSTPTTKPSINNKKLTVTSNNGLAQIKSDNSGLYTTVYDSKGKTTNQVHNTLA VTKSAQLDKDKYYLVSDYNSGKLYGWVKQNETIYNTITPKAKVNKSYTIKPGTTLYTVPW GNYNQIAGTVSKSNQSPFKASASQQVGKSTYVYGSVNGLTGWVSKYYLNDIQNKADTTNI LNVSQLNNTLGQVAKKNNGAYTTVYDSSGKINPSINGNTYRVTKKATLNNKNFYLISDFN GNQSHGWIPSSEINIQTTTPINDGIKKYNIKGNSNIYETPWGSSSQIKATVPSKGDVLKS IDALKVGSNTYLHGVINNVWGWILSDDVQTVKTSQKTSSVQTVSKIAQVNSTNDGIRSSI YDASGKHAKQYANKTYVVTKEKKLDDHTYVLLSSTSGNTPLGWYNVKDLNIKNLDEEQKV KGTYTVNQNNNGLYTIAWGTNQQRLDKNNIANQTFKASKSTIVDGKTYLYGTVNNQTGWI ALKDLTNASSFDTAEDYNDDLVITNGNSFYYDDPTSAKAYSLKPFNEQIFQITKRKVVNG VTWYYGKLSNGKSVWIKKSDLQQQLVKLSKNYRTLDEVTKIQQNVYGAPPQVQRNNSGWS NATYSEIKNAMNAKTLAKNPALKYQFLRLDRPQLLSVDRLNRLLKGKGMLENQGQAFANA AKLTGVNEIYLIAHALLETGNGQSKLAKGANLVNNQVVSNSPIKYYNVYGIGAYDYAPLV NGINYAKQSGWNSISKAIIDGAKFIAQDYIKSGQNTLYKMRWNPDQPGTHQYATDINWAN LNAKSLKYLYDQINSVGKYFEIPVFNQ >gi|312979641|gb|ACRM01000024.1| GENE 59 61515 - 61934 328 139 aa, chain - ## HITS:1 COG:SA0904 KEGG:ns NR:ns ## COG: SA0904 COG1846 # Protein_GI_number: 15926638 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 137 1 137 139 186 83.0 1e-47 MYNQLEKLITLTNNDLNLVNRRFGQRTDITNDQLELLRILYNYDRLSQYDLTMKISREQS IVSRWIKKLVHKGYITSQQSHEDLRCKDLCLTTEARDLIKQINIARCELIEARCQCLTEE EINNLNHLLNKLNSRHLYI >gi|312979641|gb|ACRM01000024.1| GENE 60 62179 - 63378 1497 399 aa, chain + ## HITS:1 COG:SA0902 KEGG:ns NR:ns ## COG: SA0902 COG0436 # Protein_GI_number: 15926636 # Func_class: E Amino acid transport and metabolism # Function: Aspartate/tyrosine/aromatic aminotransferase # Organism: Staphylococcus aureus N315 # 9 389 1 381 384 623 77.0 1e-178 MIIFRGVNMKLTLNSNSKFLRAPSIRQFSSRIKNIDDCVNLTIGQPDFPMPDVVKQAYIN AISEDKTSYSHNKGLTETRQAISQYFKRRYGFLYSEEEIIVTNGASEALDTSLRSIIEPG DEILIPGPIYAGYIPLVETLGGKPIYIDTTHSDFKVTPELIEAYFTDQTKAILLNYPTNP TGVILERSEVEALVHYLKTKEIFIISDEIYAENTFTGTHTSFAEYEEIRDQLLLIGGLSK SHSATGIRIGFLIGPEYLIEKLTFMHAYNCICANVPAQIACITALNEGLEAPKYMNEAYI ERRDYLKAKLLSLGFELEAQPEGAFYIFPSIKRFTNNDFDFCVNVLEEAHVAMVPGSSFT DIGKGYIRISYAYEMNVLKEGMRRLELYLKEHYPNVLDN >gi|312979641|gb|ACRM01000024.1| GENE 61 63429 - 64247 1235 272 aa, chain - ## HITS:1 COG:SA0898 KEGG:ns NR:ns ## COG: SA0898 COG0447 # Protein_GI_number: 15926632 # Func_class: H Coenzyme transport and metabolism # Function: Dihydroxynaphthoic acid synthase # Organism: Staphylococcus aureus N315 # 3 272 4 273 273 544 95.0 1e-155 MTRQWETLKEYDEIKYEFFEGIAKVTINRPEVRNAFTPKTVAEMIDAFTRARDDQNVSVI ILTGEGDKAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGG GNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGSGYLARIVGHKKAREIWYLCRQYNAQ EALEMGLVNTVVPLDKVEDETVAWCKDIMKHSPTALRFLKAAMNADTDGLAGLQQMAGDA TLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP >gi|312979641|gb|ACRM01000024.1| GENE 62 64240 - 65043 805 267 aa, chain - ## HITS:1 COG:SA0897 KEGG:ns NR:ns ## COG: SA0897 COG0596 # Protein_GI_number: 15926631 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Staphylococcus aureus N315 # 1 267 1 267 267 327 59.0 1e-89 MLHYNFYKSEHPSNQLLILLHGFISDSQTYMNHIEAFLTQCNVLTIDLPGHGKDDSPTDQ IWDFPYITEQINRVLSQFEKYKFSLLGYSMGGRVALYYAIHGQYEIKQLILESTSPGIAN EALRKERQAIDQARGRVLEIAGIEVFVNDWEKLPLFQTQYLLDDNKKKAMRRMRLAQNPN KLAKALRDYGTGHMPNLWGDIKRIKSDCLILAGELDEKFVNTAKKMAQEIKNYQIHIFKN VGHTIHVEDEAEFDTIVLGFLKEEQND >gi|312979641|gb|ACRM01000024.1| GENE 63 65030 - 66700 1752 556 aa, chain - ## HITS:1 COG:SA0896 KEGG:ns NR:ns ## COG: SA0896 COG1165 # Protein_GI_number: 15926630 # Func_class: H Coenzyme transport and metabolism # Function: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase # Organism: Staphylococcus aureus N315 # 2 556 3 557 557 894 76.0 0 MNHKEALTKQVYTFASELYAYGVREVVISPGSRSTPLAIAFEAHPNIKTWIHPDERSAAF FALGLIKGSERPVAILCTSGTAAANYTPAIAESQISRIPLIVLTSDRPHELRSVGAPQAI NQVNMFANYINFQFDMPVADGSQEMLNTINYQMQIASQYLYGPHRGPIHFNLPFREPLTP DLEMTENLKSEHKILPHYQKNIDIQDIKNILKDKKGLIIVGDMQHQAVDQILTYATIHDL PILADPLSQLRKYNHPNVITTYDLLYRSHLNIDADFIIRVGKPVISKKLNQWLTRTNAFQ ILVQNNDKIDVFPTPPHISYEISANDFFRSLVNEPTVNRKDWIERWQSIEAQSRKAITQH MSQATDESAFVSTLIQKLTKDDALFVSNSMPIRDVDNLLFDSEVEVYANRGANGIDGVIS TALGMAVHKKVTLLIGDLAFYHDMNGLLMAKLNDIHINVVILNNDGGGIFSYLPQKTAAE QYFERLFGTPTGLNFEYTAMLYDFSFKRLNNITDFSQVSFSTMNSYIYEILTNREDNLEQ HQLLYKKLSEILNVTL >gi|312979641|gb|ACRM01000024.1| GENE 64 66690 - 68057 1321 455 aa, chain - ## HITS:1 COG:SA0895 KEGG:ns NR:ns ## COG: SA0895 COG1169 # Protein_GI_number: 15926629 # Func_class: H Coenzyme transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Isochorismate synthase # Organism: Staphylococcus aureus N315 # 1 449 1 447 453 593 65.0 1e-169 MAANLMEDKILESIYESNKNWVSVEVVLNKSLTPSELFNLTEKQAGDRFYLRLNDNMSSF FGYHAIQRFKNNFENKQSIFREWEKFKNDVELIHVNTQKHHLKIVGGFQFSNHKSDDEWR EFGINHFVVPEVLISSVNNQTILTYTVEKAQFEMEKLNQMINYFENAQVDTTERETALGN VTRMEDIYVDEWKDLVSHTIEQLDKDKKVVLARRRLIKFDKPISIPYVLNRALNNEKNSY LFILESNQSVFFSQTPEQLLKVEDGILSTKAVAGTIPRTQDAEKDEKNIQAFLQDSKNLG EHQFVVSSILNDIKPYVENVEYNQKPNILKNDHMYHLYTEIKGTLLNHSYISLIDELHPT PALGGYPKKEAVDYIEKNEFGTRGLYGSPVGYIDVDDDCEFIVAIRSMLIKQNQTTLFAG CGIVKDSNAESEVEETSVKFSPMMNALGVVNKNES >gi|312979641|gb|ACRM01000024.1| GENE 65 68239 - 69177 1433 312 aa, chain + ## HITS:1 COG:SA0894 KEGG:ns NR:ns ## COG: SA0894 COG1575 # Protein_GI_number: 15926628 # Func_class: H Coenzyme transport and metabolism # Function: 1,4-dihydroxy-2-naphthoate octaprenyltransferase # Organism: Staphylococcus aureus N315 # 1 312 1 312 312 478 79.0 1e-135 MADQYQQYSTVRKYWHLMRPHTLTASIVPVLVGTATAKLFLLGSQDHIKFSLFLAMLIAC LLIQAATNMFNEYYDFKKGLDDHTSVGIGGAIVRNGMSPKLVMNLAIAFYIIAALLGIYL AANSSFWIIPVGIVCMAIGYLYTGGPIPISWTPFGELFSGLFMGMIIILLAFFIQTGNVN GFVVWISLPIVITIGLINMANNIRDRIKDKASGRKTLPILLGKKASITFMAAMYILAYLI VIFTALFKSGGSLFYLLVLFSFPMPIKAIRRFNKNDTPASMMPAMAATGKTNTVFGILYA LGIYISALLGGI >gi|312979641|gb|ACRM01000024.1| GENE 66 69226 - 69777 535 183 aa, chain - ## HITS:1 COG:SA0893 KEGG:ns NR:ns ## COG: SA0893 COG0454 # Protein_GI_number: 15926627 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 181 1 181 183 191 53.0 5e-49 MIRKATPSDNKQIAKLYYLIWKDMELDIVKEISKKRMINLLELSIVNVHYRTYYKNIWVY EKNNEVAGCIIAYDGSKEMEYEEQWNQLPLEEDIRLVGTPLPIKEAKNDEWYIEAVVTSP DYRGQGIATQLLEHLITTSSNKKWSLNCDYNNEKALKLYKQLGFKWVEDINLYGHDYLHM IYI >gi|312979641|gb|ACRM01000024.1| GENE 67 69921 - 70133 319 70 aa, chain + ## HITS:1 COG:SA0892 KEGG:ns NR:ns ## COG: SA0892 COG2314 # Protein_GI_number: 15926626 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 70 1 70 71 91 70.0 3e-19 MRVNKTLYVLCALFLGGVGIHKFYADKVGQGVLHLVFFWTLIPTIISIIHGIIIIFTTTA DNNGYIFIPR >gi|312979641|gb|ACRM01000024.1| GENE 68 70223 - 70321 165 32 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKNFIKRIVRTIITGYVLKWIKNKIEGNSKRK >gi|312979641|gb|ACRM01000024.1| GENE 69 70389 - 70607 313 72 aa, chain - ## HITS:1 COG:no KEGG:SAB0892 NR:ns ## KEGG: SAB0892 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_RF122 # Pathway: not_defined # 1 72 4 75 75 85 72.0 5e-16 MYYNTNVKHTTLEEFVTTMNDLGVELVIDEALRLERKKQLVTLIDEALVNRNEDDFNQYT TELKHLEAFLNE >gi|312979641|gb|ACRM01000024.1| GENE 70 70815 - 71399 362 194 aa, chain + ## HITS:1 COG:SA0882 KEGG:ns NR:ns ## COG: SA0882 COG4903 # Protein_GI_number: 15926613 # Func_class: K Transcription # Function: Genetic competence transcription factor # Organism: Staphylococcus aureus N315 # 11 194 6 189 189 271 73.0 5e-73 MTQFNKPPNTIYVIRKGDMVIRPTFDNHQQPNGSEILKFDTSREIIPFKTQKIIERSCRF YGNNYLSKKAETQRIAGITSKPPILLTPLFPTYFFPTHSDRLEENIWINMHYISDIKPLK NRKSKIIFANQEALTLNVSFHSLWHQYSNSIFYYYMIDKQARMKSNNPDMPIDYEKTSLN IFEALSHYSLLEDK >gi|312979641|gb|ACRM01000024.1| GENE 71 71802 - 72791 1333 329 aa, chain - ## HITS:1 COG:SA0884 KEGG:ns NR:ns ## COG: SA0884 COG0095 # Protein_GI_number: 15926615 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Staphylococcus aureus N315 # 1 328 1 328 328 524 79.0 1e-149 MKFVSNNNITDPTINLAMEEYVLKHLPADDSYFLFYVNEPSIIVGKNQNTIEEVNKQYID DHHIHVVRRISGGGAVYHDKGNLNFSFVTSDDGNSFHNFKKFTEPIVQALQSMGVDAEMT GRNDIQVGAAKISGNAMVKVKNRMFSHGTLMLNSDLEEVQNALKVNPKKIQSKGVKSVRK RVANIEEFLDDSITIDQFKQIILKTIFGEHEVEEYHLTKEDWNNIKQLSNEKYRTWDWNY GKNPKYNFERDEKFEKGFIQVKFDVKKGKIEHAKIFGDFFGEGNVNELEDALVGTLHDYT HIKEVMEDYDFYHYFGDIDKDSILKLMAY >gi|312979641|gb|ACRM01000024.1| GENE 72 72980 - 73156 338 58 aa, chain + ## HITS:1 COG:SAS027 KEGG:ns NR:ns ## COG: SAS027 COG4873 # Protein_GI_number: 15926616 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 58 1 58 58 92 96.0 2e-19 MTVAEVGNIVEFYDGLRGRVEKINDNSVIVDLTIMENFNELDLPEKTVINHKRYKIVE >gi|312979641|gb|ACRM01000024.1| GENE 73 73172 - 73774 612 200 aa, chain + ## HITS:1 COG:SA0885 KEGG:ns NR:ns ## COG: SA0885 COG1266 # Protein_GI_number: 15926617 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 1 200 1 200 200 246 76.0 2e-65 MKNTSKPLIWFVASFIVFHLILFIMWGEHQEYWYLYTGIMLIAGISYVFYQRDITSKRLL TSIGVGVITGVVLVIIQLIFSLISSQITYTELIKELSRTGVYFKWQMLITILFVIPCHEL YMRAVLQKELNKFRLPRWITILIPALCSSSLFIYLDKWWIVIFIFIAQVILSLSYQYTRR IVTSSLGQIVAIILLLIFHG >gi|312979641|gb|ACRM01000024.1| GENE 74 73938 - 75296 1346 452 aa, chain - ## HITS:1 COG:SA0880 KEGG:ns NR:ns ## COG: SA0880 COG0168 # Protein_GI_number: 15926611 # Func_class: P Inorganic ion transport and metabolism # Function: Trk-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 452 1 452 452 632 81.0 0 MSIFSKLFKKSTPQQGIVLYYLIAIVVAFLLLNLPFVHKPGVKVSPIDTLFVAVSGISVT GLTPVSIIDTYSSFGQLIILIILNIGGIGVMAIGTVLWVVLGKHIGMRERQLIMLDNNKD TMSGTVKLIIEIVKTIMTIEIVGALLLAFYFYRDNPDLKNALMQGLFVSISATTNGGLDI TGQSLVPYAKDYFVQTIVMFLIILGSIGFPVLLEIRAYIRNRVSHFRFSLFTKITTTTYF FLFISGFLSILALEYNHAFKGYNWHQSLFYALFQSATTRSAGLQTIDVTYFSDATNVIMS ILMFIGSSPSSVGGGIRTTTFAILILFVINFNNNTEKSSIKVFNREIHTIDIQRSFAVFI MATVLTFVSIIIILAAEANNLSFLQVFFEVMSAFGTCGLSLGVTDNISSITKVVLMLLMF IGRVGLISFIIMISGRKEPDKFSYPKERIQIG >gi|312979641|gb|ACRM01000024.1| GENE 75 75315 - 77174 2094 619 aa, chain - ## HITS:1 COG:SA0879 KEGG:ns NR:ns ## COG: SA0879 COG0265 # Protein_GI_number: 15926610 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain # Organism: Staphylococcus aureus N315 # 19 619 159 769 769 348 40.0 2e-95 MDNDKKQVIPRSKYGRKRHEYFHNEEREERIERERQKREHLAEKEQHQAKVNEERVKDNL RKARIEKLTQEEIQQQQHLAKLRSKRDASKTAKKNNRHHLTLPEEQHLKQEDIHNEKLKQ QKPISSNGSKSENETNKSIEPTYSRLNKNNESRQKSKKEKDNQHNDTIKTQSKHPTITEE SYTSTKDKESIDTEKEQMSTQQHSTQVEHTKSEQSKHISNSDKNTTENISDQQPHESHEQ SANDTQNKIVDFLKEHWIKILIAIALILILVLVKAIFTEPSQEQHSNQTHTQDKKYTTTM KNANNTVRSVVTVESDAPKNISVQTTNSKSDNELGSGVVYKTVGDTFFVLTNTHIVGEAD KVKITYGENKSIKGDVVGKDKWSDIAVVKAKINNKNIKPIHIGNSNKLVLGESILIVGNP LGEEFRNTVSKGIISGLNRLVPVDFDKDNKNDELMQTFQIDASVNPGHSGGAVVNKDGEL IGIVSLKINMPSIEGMGFALPINEAKSIAKELEKNGKVNYPNTGIALENVNDLNHYERSL LKLPNDINDGILVKKLKDGGLGKKSGLKIGDVIVKLEGKTLKDNLQYRHILFNHRQDLKT LSAKIYRDGNIQDIEINLK >gi|312979641|gb|ACRM01000024.1| GENE 76 77408 - 78205 1285 265 aa, chain - ## HITS:1 COG:SA0878 KEGG:ns NR:ns ## COG: SA0878 COG0861 # Protein_GI_number: 15926609 # Func_class: P Inorganic ion transport and metabolism # Function: Membrane protein TerC, possibly involved in tellurium resistance # Organism: Staphylococcus aureus N315 # 1 264 3 267 267 363 80.0 1e-100 MDPSLILPYLWVILVLVFLEGLLAADNAVVMAVMVKHLPPAQRKKALFYGLLGAFIFRFI ALFLISIIVNFWFIQAIGAAYLIFMSIRNLWNFFHKKDEEEQVGDEHHYDETGAEKKVSA GKFWATVFKVEFADIAFAIDSMLAAMAIAVTLPKMGIHFGGMDLGQFGVMFIGGMIGVIL MRFAATWFVDLLNKYPGLEGAAFAIVGWVGIKLVVIVLAHPDIGVLSEDFPHSTLWQAIF WTVMILLVVIGWLTSVRKNKKNAKH >gi|312979641|gb|ACRM01000024.1| GENE 77 78515 - 80077 2009 520 aa, chain - ## HITS:1 COG:SA0877 KEGG:ns NR:ns ## COG: SA0877 COG4108 # Protein_GI_number: 15926608 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptide chain release factor RF-3 # Organism: Staphylococcus aureus N315 # 1 520 1 520 520 972 94.0 0 MSLKEEIESRKTFAIISHPDAGKTTLTEKLLYFSGAIREAGTVKGKKTGKFATSDWMKVE QERGISVTSSVMQFDYDDYKINILDTPGHEDFSEDTYRTLMAVDSAVMVIDCAKGIEPQT LKLFKVCKMRGIPIFTFINKLDRVGKEPFELLEEIEETLNIDTYPMNWPIGMGQNFFGII DRETKTIEPFRDEENILHLNDEYELEEEHTIGNDSAFEQAIEEFMLVEEAGEKFDNGALL NGDLTPVFFGSALANFGVQNFLNAYVDYAPMPNARQTNEEVEVSPFDDEFSGFIFKIQAN MDPKHRDRIAFMRVVSGAFERGMDVTLQRTNKKQKITRSTSFMADDKETVNHAVAGDIIG LYDTGNYQIGDTLVGGKQKFNFQDLPQFTPEIFMKVSAKNVMKQKHFHKGIEQLVQEGAI QYYKTLHTNQIILGAVGQLQFEVFEHRMKNEYNVDVVMEPVGRKIARWIENEEDIQDKMN TSRSILVKDRYDKFVFLFENEFATRWFEEKFPDIKLYSLL >gi|312979641|gb|ACRM01000024.1| GENE 78 80074 - 80331 218 85 aa, chain - ## HITS:1 COG:no KEGG:SH1940 NR:ns ## KEGG: SH1940 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 81 1 81 84 76 53.0 3e-13 MIIKQLSEQNEIINVYLYEHVHHSYYMIAIPDMFWSVELNAQLNEQEINEELIMQLFTFK EESEALRIASQLSKWIIKDLKENNE >gi|312979641|gb|ACRM01000024.1| GENE 79 80321 - 81805 1958 494 aa, chain - ## HITS:1 COG:SA0876 KEGG:ns NR:ns ## COG: SA0876 COG0769 # Protein_GI_number: 15926606 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl tripeptide synthase # Organism: Staphylococcus aureus N315 # 1 494 1 494 494 836 83.0 0 MNANELFNKIRVKQVIGTLDIDITDITTDSRTASGESIFVASKGYTVDSHRFCQNVIDQG TKIIVVNRKQEVKGEVTQVIVPDTLRVASILAHTLFDYPSQQLTTFGVTGTNGKTSIATM IHLIYRGLDKNSAYLGTNGFQINEEKTKGANTTPETVLLTKKIKQAVDSKAEAMTMEVSS HGLALGRLRGVEFDVAVFSNLTQDHLDFHGTMEAYGHAKSLLFSQLGEDLSKEKYVVLNN DDDFSKYLETVTPYEILTYGIDNEAQFMAQNIKESLQGAQFDFATPFGTYHVSSPYVGKF NISNLMAAMIAVWSKGIDFKDIVEVVKSLEPVEGRLEVLDPSLPIDLIIDYAHTADGMNK LIDAVQPFVKQKLIFLVGMAGERDLTKTPEMGAVACRADYVIFTPDNPADDDPKMLTAEL AKGATHNNYIEFEDRAEGIKHAIEVANPGDTVVLASKGREPYQIMPGHVKVPHRDDLIGL EAAYKKFGKSNYDH >gi|312979641|gb|ACRM01000024.1| GENE 80 82186 - 83364 928 392 aa, chain + ## HITS:1 COG:SA0875 KEGG:ns NR:ns ## COG: SA0875 COG0707 # Protein_GI_number: 15926605 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase # Organism: Staphylococcus aureus N315 # 1 391 1 391 391 634 78.0 0 MVTQNKKILIITGSFGNGHLQVTQSIVNQLNDMNLPHISVIEHDLFMEAHPILTSICKKW YINSFKYFRNMYKNFYYSRPDELDKCFYKYYGLNKLINLLLKEKPDLILMTFPTPVMSVL TEQFNMRIPIATVMTDYRLQKNWITPNSHRYYVATKDTKEDFVNVGVPASLIKVTGIPIS DKFEADIDQQAWLKKYHLDPKKNTILMSAGAFGVSKGFEHMIERILEKSPHSQVVMICGR SKGLKRNLEARFKSYDNVLILGYTKHMNEWMASSQLMITKPGGITISEGLTRSIPMIFLN PAPGQELENAYYFQEKGYGRIANTPEDAIDIVSELTHDSNKLTLMINTMRQDRVDYSTHR LCIDLLNMLNHSSQQQEIYGKVPLYAKFFVKQ >gi|312979641|gb|ACRM01000024.1| GENE 81 83390 - 84535 1216 381 aa, chain + ## HITS:1 COG:SA0874 KEGG:ns NR:ns ## COG: SA0874 COG0477 # Protein_GI_number: 15926604 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 379 18 396 396 498 77.0 1e-141 MLVILFLMEFARGMYVLSYVNYLPTVTSIAVAVTSAALSIHFISDAATNFVIGFLLKKFG TKIVLNLGFLLAFLSLFLIIFFPANPIIIIISAIMLGIAVSPIWVIMLSSVEESQRGKQM GYVYFAWLLGLLVGWAFMNVLVKIHPTRFAFTMSLVVIIAWILYYFVDVKLTNYDTKPVK EQLGQIVEVMKRHMILFPGILLQGASISALLPILPTYATKVVGVTTIEYTVAIAIGGIGC AISMLFLSKIIDKNSTGFMYAVIFVGFILFTLFIFGLSLVNNIIVVWIVAAFIGLMYGIL LPAWNTFMAGHIDPSEQEETWGVFNSVQGFGSMIGPLFGGLIAQFSNGLNNTFYVSAFIF LLLAIFYGIYFIKSKKHQKYS >gi|312979641|gb|ACRM01000024.1| GENE 82 84584 - 85093 716 169 aa, chain - ## HITS:1 COG:SA0873 KEGG:ns NR:ns ## COG: SA0873 COG1514 # Protein_GI_number: 15926603 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 2'-5' RNA ligase # Organism: Staphylococcus aureus N315 # 1 169 1 169 169 231 66.0 5e-61 MKIGLALIPAQSFQNEVDGYRKRYDTEYARIMPHITIKPHFELKETELDSFKDEVKQKLD GFKPVEVHVTKASSFKPTNNVIYFKVEKTEELENLFNTFNTESFYGKAEHPFVPHFTIAQ GLTSQEFEDIFGQVKLAGVDHRETIDELSLLHYNEDEDRWNIVDSFKLA >gi|312979641|gb|ACRM01000024.1| GENE 83 85200 - 85955 694 251 aa, chain - ## HITS:1 COG:SA0872 KEGG:ns NR:ns ## COG: SA0872 COG2382 # Protein_GI_number: 15926602 # Func_class: P Inorganic ion transport and metabolism # Function: Enterochelin esterase and related enzymes # Organism: Staphylococcus aureus N315 # 1 246 1 245 252 343 67.0 1e-94 MEEFKAGKINKYILNSKILERDITLSIYLPEDFTELFKSQVIICFDGLDFFRFGRIQREY ERLRKEEHIERAIIVGFHYEDVEKRREEFHPQGSRSQKTIQSVVKELLPFIDQTFPTYKV GNSRLLIGDSLAGSIAFLTSLTYPSIFSQIAMFSPHSDHTVLEKFETCKQRNRLTIWHAI GRDEVDFKLPTTGEQADFLTPNRKLSNLIEQDECVTYVYNEFNGSHNWKSWKPMIGDILY YFLNNNHSTYE >gi|312979641|gb|ACRM01000024.1| GENE 84 86226 - 87311 1397 361 aa, chain + ## HITS:1 COG:SA0870 KEGG:ns NR:ns ## COG: SA0870 COG0628 # Protein_GI_number: 15926600 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 1 361 1 361 361 494 81.0 1e-140 MLNKVWFRTGIFLIILFVLIKLFMEVHSVFTPIATIIGSVFLPFLLSGFLFYICLPFQTL LEKWGFPRWASILTIFIVLIAIIAIVVAFIAPIIISNVNNLIKATPTLQRDAEQVVNFSL NQMDKLPSDVTAKINSAMKSISDSLTGILANSITYITSLISTIFLLIMVPFFLIYMLKDH EKFIPAIGKFFKGERKVFVVDLLKDLNYTLKSYIQGQVTVSFILGIILYIGYSLIGLPYT PLLVLFAGVANLIPFLGPWLSFAPAAILGIIDGPSTFIWVCVVTLIAQQLEGNVITPNVM GKSLSIHPLTIIVVILAAGDLGGFTLILIAVPLYAVLKTIARNVFKYRQRIIDKANSDVK D >gi|312979641|gb|ACRM01000024.1| GENE 85 87657 - 88427 1241 256 aa, chain - ## HITS:1 COG:SA0869 KEGG:ns NR:ns ## COG: SA0869 COG0623 # Protein_GI_number: 15926599 # Func_class: I Lipid transport and metabolism # Function: Enoyl-[acyl-carrier-protein] reductase (NADH) # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 444 89.0 1e-124 MINLENKTFVIMGIANKRSIGFGVAKVLDELGAHLVFTYRKERSKKELEKLLDQLNQKEH HLYQIDVQKDEDVINGFAKIGEEVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDI SSYSLTIVAHEAKKIMPNGGSIVATTYLGGEFAIQNYNVMGVAKASLEANVKYLAYDLGP DNIRVNAISAGPIRTLSAKGVGGLNLILKEVEERAPLRRNVDQEEVGRTAAYLLSDFSSG VTGENIHVDSGFHAIK >gi|312979641|gb|ACRM01000024.1| GENE 86 88633 - 90462 1679 609 aa, chain - ## HITS:1 COG:SA0868_1 KEGG:ns NR:ns ## COG: SA0868_1 COG0475 # Protein_GI_number: 15926598 # Func_class: P Inorganic ion transport and metabolism # Function: Kef-type K+ transport systems, membrane components # Organism: Staphylococcus aureus N315 # 1 394 6 399 399 538 81.0 1e-153 MVIVVVAAFLTPIIVNRLNVTFLPVVVAEILMGIIIGNSFLGLVHKDEMLNILSTLGFIF LMFLSGLEIDFSAFKKDTRKRQGINKNEKNLPSHLQLALTVFSLIMVLSIILAFAFKWLG FVDDVLLMVIIISTISLGVVVPTLKEMNIMRTTIGQFILLVAVLADLFTMVLLTIYGGIN GEGGGSIWLSAILIVFTAIFYLLGSVFKRLNFMQRLMGGTTQIGIRAIFALIILLVALAE GVGAEYILGAFLAGVVVSLLKPDEEMIHTLDSFGYGFFIPIFFIMVGVDLDIPSLIKEPS LLIIIPILILSFIVSKLIPVLFIRRWFDTKTTIASAFLLTSTLSLVIAAAKIAEELKAIT SEMSGILILSAIITCVFVPIVFKKLFPIPDEVNRKIDIALIGKNQLTIPIVQNLTSQLYN ITLFYRKDLSDKRNLPDNVTVIEISEYEESLLERLGLFNQDIVVCSANDDGLNKRIAKLA KSHGVNRVICRLENSGDDEELKTDGIEVFSNFISNKIFLKGLIETPNMLNILSNVETSLY EIEMLNYKYENILLRHFPFGGDIIFVRIVRNNESIVPHGDTQLRYKDRLIVTGSKEYVDE LKSELEFYY >gi|312979641|gb|ACRM01000024.1| GENE 87 90487 - 91872 1760 461 aa, chain - ## HITS:1 COG:SA0867 KEGG:ns NR:ns ## COG: SA0867 COG2239 # Protein_GI_number: 15926597 # Func_class: P Inorganic ion transport and metabolism # Function: Mg/Co/Ni transporter MgtE (contains CBS domain) # Organism: Staphylococcus aureus N315 # 1 460 1 460 461 620 71.0 1e-177 MSLNTETTDIQHNKVYNQKLLDDSLNRNDIDQFRKEFLTLHQYEQSEYFENTTNQNRQRI FEFLSPQEVSRFFNQLDIEGKEYEILFDSMHAHYASEVLENMSTDNAVDILNELSNSKVA SLLALMDNRVTDKIKKLLHYEEDTAGGIMTTEYISLDIGTSVKEALMLVKNQAPDAETIY VIYVVDTAGQLVGVLSLKDLIVANIEAHVEEVMIQRVVSVNVEEDQERVAQKMKDYDFIA MPVIDYQHHLVGIITIDDILDVVNEEADEDYSRLAGVSDTKSTDQSVFKKALKRLPWLII LTFLGMITATILGGFEDTLSQVALLAAFIPIISGMSGNSGTQSLAVSVRNISNGDIKEKS KLKIALKEAGSGLITGFVCAVILFLIIVIIYRQPFLALIVGASLTIAMTVGTLVGSMIPI LMNKIHIDPAVASGPFITTINDIVSMLIYFGLATTFMSYLT >gi|312979641|gb|ACRM01000024.1| GENE 88 91891 - 92757 205 288 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|161507907|ref|YP_001577871.1| ribosomal protein large subunit [Lactobacillus helveticus DPC 4571] # 71 281 77 284 285 83 28 7e-15 MKFVYHIHSEEMLKTFLQRHNYSKKTISAIKRDGALIINRQPVTVRYMLKKDDHLIVKLP EEVPSTYLRPSNKHIEILYEDTYLIIVSKPVHLNCAPSREHPHDSLIERVMYYLNHSTNK VQYIVPHIVTRLDRNTTGIVIFTKHGHIHHLMSTFEIDKRYICVCYGKTKEQSMIEAPIG RNKDSIITRCITPSGKYAKTEYKTLSSHHSASLCEVKLHTGRTHQIRVHFKHIGHPLIGD DLYDGFHPRIQTQSLQCYKVKFIHPIYNKEIEIILDYKNLEKIYQSVN >gi|312979641|gb|ACRM01000024.1| GENE 89 92757 - 93563 832 268 aa, chain - ## HITS:1 COG:SA0865 KEGG:ns NR:ns ## COG: SA0865 COG0061 # Protein_GI_number: 15926595 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar kinase # Organism: Staphylococcus aureus N315 # 1 268 1 268 269 483 87.0 1e-136 MRYTILSKGDSKSNTLKHKMMNQMNSFHMIEDTENPEIVISVGGDGTLLQAFHQYSHMLS NVAFVGVHTGHLGFYADWLPHEVEKLIDEIHHSEFQVIEYPLLEIIVKYNNTKNETRYLA LNEATMKTENGSTLVADVAIRGKHFERFRGDGLCISTPSGSTAYNKALGGALIHPSLEAI QIAEIASINNRVFRTVGSPLVLPKHHTCLITPVNHNTIRTTIDHVSLKHKNVSDIQFRVA NEKVRFARFRPFPFWKRVHDSFIESEDD >gi|312979641|gb|ACRM01000024.1| GENE 90 93578 - 94207 778 209 aa, chain - ## HITS:1 COG:SA0864 KEGG:ns NR:ns ## COG: SA0864 COG2357 # Protein_GI_number: 15926594 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 209 1 209 211 350 91.0 1e-96 MNQWEQFLTPYKQAVDELKVKLKGLRKQYEVGENASPIEFVTGRVKPITSIIDKANKRGI PFDRLREEMYDIAGLRMMCQFVDDIDVVVNMLRQRQDFKVVEERDYINNTKQSGYRSYHV IIEYPIETLSGQKMILAEIQIRTLAMNFWATIEHTLRYKYDGDYPAEIQHRLERAAEAAY LLDEEMSEIKEEIQEAQKYYTQKRAKKHD >gi|312979641|gb|ACRM01000024.1| GENE 91 94224 - 94571 390 115 aa, chain - ## HITS:1 COG:no KEGG:SH1953 NR:ns ## KEGG: SH1953 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 115 1 115 115 177 86.0 8e-44 MRIYVNEIKIKDDSIYCYSEDPTDGLDEVGQMLVDSDNFSFAYLLDDGSSYSYLIFVQET WSMLHNNRDKKVIINDELELEHFQDELSYILENVEGNNNYGKEFVSAVEETFELK >gi|312979641|gb|ACRM01000024.1| GENE 92 94781 - 95356 669 191 aa, chain + ## HITS:1 COG:SA0862 KEGG:ns NR:ns ## COG: SA0862 COG4116 # Protein_GI_number: 15926592 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 191 1 192 197 196 56.0 3e-50 MSTNNEIEFKQLIDFNTYNAIKASYFKQLTPFTQINYYIETPSFKLRDHRSALRIRVKQN IFEITLKVPAKVGLIEYNHLIDMNPHIGQTIVKSTLPNDIQNILTEFDIGENELSVLGAL TTERLEVEFQNELLVLDKSQYFDKTDYELEFEVNDYEIGFEKFQNLLKQFNLVHEPPKNK VQRFFEYQAQL >gi|312979641|gb|ACRM01000024.1| GENE 93 95450 - 95815 335 121 aa, chain + ## HITS:1 COG:SA0861 KEGG:ns NR:ns ## COG: SA0861 COG2346 # Protein_GI_number: 15926591 # Func_class: R General function prediction only # Function: Truncated hemoglobins # Organism: Staphylococcus aureus N315 # 1 121 1 121 121 201 79.0 3e-52 MTTTPYDVIGEKALYEMIDYFYFLVENDQRINHLFPGDFKETSRKQKQFLTQFLGGPDLY TQEHGHPMLKKRHMAFRITTYERDAWLENMYKAINKAQFPAGVGEYLYERLCLTANHMVN S >gi|312979641|gb|ACRM01000024.1| GENE 94 95839 - 96636 739 265 aa, chain + ## HITS:1 COG:SA0860 KEGG:ns NR:ns ## COG: SA0860 COG2761 # Protein_GI_number: 15926590 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis # Organism: Staphylococcus aureus N315 # 8 264 1 257 261 417 87.0 1e-116 MAEELKIVDNASRESTNLSPVNKIEIYSFFDPFNKDCFKLSAIISKLRIEYNQYIRIRHI LNPSLKVLTKCQAQSTSDFDNIALAYKAAELQGRLRAERFIHLMQNEIIPKNDIITEEMI CNCIKNAGLDYDVFKEDLQKNKLTESLKIDLHIAREMEIEQAPSLVFFSEDVHEEGLKVE GLYPYHIYTYIINELMGCPIEKELPPNLETYIQSKQLVTMEELLTIYEWPEKLLVKELKK LALQQKVEKLNYPDGEFWQSKMPKK >gi|312979641|gb|ACRM01000024.1| GENE 95 96903 - 98711 2145 602 aa, chain - ## HITS:1 COG:SA0859 KEGG:ns NR:ns ## COG: SA0859 COG1164 # Protein_GI_number: 15926589 # Func_class: E Amino acid transport and metabolism # Function: Oligoendopeptidase F # Organism: Staphylococcus aureus N315 # 1 601 1 601 602 1021 87.0 0 MSQQLTREEQERKYPNETWDLTTIFESDEAFEKALKEVESYLGKEEQFKGHLGDSAKTLY NALALEDEIGTQLEKVYVYAHLKQDQDTSNDKYTGFESRAHQLIIKISSAWSFLVPEILQ IDEEKLESFIKSNDDLKRYAFDLKLINEKRPHILDADKEKLLTQAQDALSTPENVYGMFS NADLEFKDAVDKDGKKHPLTQGTFIKYLESDDRELRQSAYNNLYEAYGAYNNTLGSTLAG EVKKNIFNARAHNYKTARERALSNNHIPEEVYDNLVATVHKYLPLLHKYTQLRKELLGID DLKMYDIYTPLVKDVKFEMPYDEAKEWMLKALEPMGKEYLDVVKEGLNHRWVDVYENKGK RSGGYSSGAHLTNPFILLNWSDTISDLYTLVHEFGHSAHSYFSRKNQPSNSSDYSIFVAE VASTCNEALLSDYMDKHLDDDRRLLLLNQELERFRATLFRQTMFAEFEHKIHQIEEAGEP LTSTRMNEEYAKLNRQYFGDVVETDDHISKEWSRIPHFYMNYYVYQYATGYSAAQSLSHQ ILTEGQPAVERYINEFLKKGSSNYPIEILKNAGVDMTTPEPIEQACEVFEQKLEAFEKLM KH >gi|312979641|gb|ACRM01000024.1| GENE 96 98757 - 99734 639 325 aa, chain - ## HITS:1 COG:SA0858 KEGG:ns NR:ns ## COG: SA0858 COG4469 # Protein_GI_number: 15926588 # Func_class: R General function prediction only # Function: Competence protein # Organism: Staphylococcus aureus N315 # 1 317 1 318 328 229 43.0 7e-60 MLVAINRNNETVYAHQAIITEEYRCPYCKEKLLLKKGLKKIPHFAHVSQIKKRCMKNETE KHYYVKFFIAQRLKQYHFNVEIEPYFSKIMQYPDILVDAKVAIEVQFSRISIKEIKSRLR GFEQIGVAVIWLIEQLQYRKGYLYLNTFQAYFINPIDRTLYSWEHEKQLIVKYVNIQHIV GRKFIAHRRIIQISELLSFNEKKNESYCYKLSNRHISRYIFNCRKKRSVLEPSLSAMYQL QITDDEVCRDTGYIFSYQIFIENHPVQWQLKLKLLLKHNLPKHYLMSYLKFRQFYLQDIN KEEITLKLIDDYIQQVSGSLNVQNK >gi|312979641|gb|ACRM01000024.1| GENE 97 99847 - 100566 988 239 aa, chain - ## HITS:1 COG:SA0857 KEGG:ns NR:ns ## COG: SA0857 COG4862 # Protein_GI_number: 15926587 # Func_class: O Posttranslational modification, protein turnover, chaperones; T Signal transduction mechanisms; N Cell motility # Function: Negative regulator of genetic competence, sporulation and motility # Organism: Staphylococcus aureus N315 # 1 239 1 239 239 332 79.0 4e-91 MRIERVDDTTVKLFITYGDIEARGFSREDLWTNRKRGEEFFWSMMDEINEEEDFVVEGPL WIQVHAFEKGVEVTISKSKNEEAMNMSDDHANEQFEEQVNELLANTLEQEESIEDLFEQR AQQKQAHKSKRKPSQQRSSLRTIIVKFEDLEEVIHYAYHHNLSTDEFEDLLYMSDSHYYY AIHFDSTVSQETINDSYSQLLEFAYPSDKTEVYLNDYAKIIMSHNVTSQVRRYFTDSVE >gi|312979641|gb|ACRM01000024.1| GENE 98 100765 - 101160 641 131 aa, chain - ## HITS:1 COG:SA0856 KEGG:ns NR:ns ## COG: SA0856 COG1393 # Protein_GI_number: 15926586 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Staphylococcus aureus N315 # 1 131 1 131 131 239 97.0 1e-63 MVTLFTSPSCTSCRKAKAWLQEHDIPYTERNIFSEHLTIDEIKQILKMTEDGTDEIISTR SKTYQKLNVDIDSLPLQDLYTIIQDNPGLLRRPIILDEKRLQVGYNEDEIRRFLPRKVRT FQLQEAQRLVD >gi|312979641|gb|ACRM01000024.1| GENE 99 101429 - 102418 1170 329 aa, chain + ## HITS:1 COG:SA0855 KEGG:ns NR:ns ## COG: SA0855 COG0180 # Protein_GI_number: 15926585 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Tryptophanyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 329 1 329 329 579 86.0 1e-165 METLFSGIQPSGIPTLGNYIGALKQFAEVQNDYNCYFCIVDQHAITVPQDKIKLRKQIRQ LAAIYLASGIDPDKSTLFIQSEVPAHVQAGWMLTTISSVGELERMTQYKDKAQKRTDGIP AGLLTYPPLMAADIVIYNTNIVPVGEDQKQHMELTRNLVERFNSRYNDILVKPEIRMPKV GGRVMSLQDPTKKMSKSDDNQKNFISLLDEPNVAAKKIKSAVTDSDGIIKFDKDNKPGIS NLLTIYSSLTDKSIKDLETQYENEGYGKFKTDLSEVVKDFLVHFQEKYSEFYNSDKLDDI LDQGRDKAQKASFKTLKKMERAMGLGRKR >gi|312979641|gb|ACRM01000024.1| GENE 100 102469 - 104136 1939 555 aa, chain - ## HITS:1 COG:SA0849 KEGG:ns NR:ns ## COG: SA0849 COG4166 # Protein_GI_number: 15926579 # Func_class: E Amino acid transport and metabolism # Function: ABC-type oligopeptide transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 6 553 5 550 551 651 62.0 0 MKKINFKVILGLIVTTLLLSACGKSGGLYDDSGQTYRVATSSDMNTLDTVLATDTVSFTI YNQVFEGLYTLNGKDEAIPGIAKGDPKESNNGKTLTIKLRKNAKWSNGDPVTAHDFVFAW RKAVDPKTASEYAYIMYDIKNAEDINLGKHGKKPKDLGIKALDDYTLKIDLTKPIPYFKQ MLAFGTFMPQNEKAVKKYGDKYGTTAEKVVYNGPFKVSKWAVEDKIVLTKNDNYWDKKSV KLDRVNYKILKDTQAGASLYDTNSVDSAGITSEQVDKYKDNPGLFKRLIASTFFLKMNEK QQPEFKNKDMRLAIAQSVNKKDYVNEVLGTGAKPFDGFTARDTVKTPEGKDYASTVKSPL KFNPKEAKQHLNKAKKALGKDKFTFTLNTEDTPDSKISAEFIKSQIESNLPGVTVKIKQL PFKQRVEAELSMNYSMSLSGWGPDYPDPTTFLDTMTTGNAQNNTGWGSKEYDNLLEKANG ELLQKPKERFATMRQAEELFLNDAPVAPIYQKGTATLRNPQVKGIEYHQIGGDYSLKHVY IDKSIDRETGKKKDN >gi|312979641|gb|ACRM01000024.1| GENE 101 104164 - 105114 332 316 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|149915877|ref|ZP_01904401.1| 50S ribosomal protein L17 [Roseobacter sp. AzwK-3b] # 1 254 1 258 563 132 33 1e-29 MEKSKKVLLEIKNLKQYFNEGKRNEVRAIENISFNIYKGETLGLVGESGCGKSTTGKAII KLNDITDGEILYEGQDIQKITKRKELLNFNKKIQMIFQDPYASLNPRLKVMDIVAEGIDI HKLASNKKDRKRRVYDLLETVGLSKEHANRYPHEFSGGQRQRIGIARALAVEPEFIIADE PISALDVSIQAQVVNLMLKLQKERGITFLFIAHDLSMVKYISDRIAVMHFGKIVELGTSD EIYYHPLHDYTKSLLSAIPQPDPDSERTRKRIVYEEDESKNAERRLQEIRPNHYVFVTDE EAVRLKEQDQTHLQHN >gi|312979641|gb|ACRM01000024.1| GENE 102 105101 - 106186 1157 361 aa, chain - ## HITS:1 COG:SA0847 KEGG:ns NR:ns ## COG: SA0847 COG0444 # Protein_GI_number: 15926577 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 358 1 358 360 640 88.0 0 MSERVLEVNNLHVSFDITAGEVQAVRGVDFFLNKGETLAIVGESGSGKSVTTKAITKLFQ GDTGRIKKGTINFLGEDLAIKSEKELNKLRGKDISMIFQDPMTSLNPTMQIGKQVMEPLI KHRHYSKSEAKKRALEILNLVGLPNAEKRFKAYPHQFSGGQRQRIVIATALACEPKILIA DEPTTALDVTMQAQILDLMKELQQKIETSIIFITHDLGVVANVADRVAVMYGGQMIETGH VDEIFYDPKHPYTWGLLSSMPDLTTSNETELIAIPGTPPDLLHPPKGDAFARRSQYALDI DFKEAPPWFKVSPTHYVKSWLLDERAPKVEPLEMVKKRQRQMPNNYDKPRRVERVSFNGE E >gi|312979641|gb|ACRM01000024.1| GENE 103 106204 - 107268 1404 354 aa, chain - ## HITS:1 COG:SA0846 KEGG:ns NR:ns ## COG: SA0846 COG1173 # Protein_GI_number: 15926576 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 10 354 12 356 356 612 87.0 1e-175 MPENFNKPFDDHSNAAMSHTSEGAVGTDFVIRELDLNKEPEIQRESKNFWQDAWTQLKRN KLAIVGLIGLILIVILAFVGPAFSKHDYAEQDVTRRNLPAKIPVLDQVHFLPFDGTGADG KSAYKEAGVKENFWFGTDQLGRDLWTRTWKGAQISLFIGIVAAALDIFIGVVYGAISGFF GGRVDNVMQRILEIIASIPNLIIVILFVLIFEPSIWTIILAMSITGWLGMSRVVRGEFLK LKSQEFVMASRTLGASKFKLIFKHILPNTLGAIVVTSMFTVPSAIFFEAFLSFIGIGVPA PKTSLGSLVNDGRAMLLIHPHELFIPATVLSLLILFFYLFSDGLRDAFDPKMRK >gi|312979641|gb|ACRM01000024.1| GENE 104 107268 - 108194 1203 308 aa, chain - ## HITS:1 COG:SA0845 KEGG:ns NR:ns ## COG: SA0845 COG0601 # Protein_GI_number: 15926575 # Func_class: E Amino acid transport and metabolism; P Inorganic ion transport and metabolism # Function: ABC-type dipeptide/oligopeptide/nickel transport systems, permease components # Organism: Staphylococcus aureus N315 # 1 308 1 308 308 509 91.0 1e-144 MTRYILKRLGYMVLSLFIIITITFFLMKMMPGSPFNDAKLSAEQKAILNEKYGLNDPVAV QYLHYLKNVVTGDFGYSFQYHNQPVWSLIRPRLIPSMEMGITAMIIGVILGLILGVAAAT KQNTWVDYTTTVISVIAVSVPSFVLAVLLQYVFAVRLRWFPVAGWEGFSTAVLPSLALSA SVMATVARYIRAEMIEVLSSDYILLARAKGNSPIRVLFGHALRNALIPIITIIVPMLAGI LTGTLTIENIFGVPGLGDQFVRSITTNDFSVIMATTILFSTLFIVSIFIVDILYGVIDPR IRVQGGKK >gi|312979641|gb|ACRM01000024.1| GENE 105 108426 - 108803 246 125 aa, chain + ## HITS:1 COG:no KEGG:SH1971 NR:ns ## KEGG: SH1971 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 9 125 2 118 118 114 60.0 1e-24 MNNIKTWFIWLFLPLISTFLLWMFVTQHSFISFVDILFYISLILFILLFLLLLVQEGIFD ATSFGFRRMRYQLASRSKKKTLENDDFFNPKQVKKEHYTISTWLLPALILCAFYFILTIL ISIFL >gi|312979641|gb|ACRM01000024.1| GENE 106 108857 - 110101 1822 414 aa, chain - ## HITS:1 COG:SA0843 KEGG:ns NR:ns ## COG: SA0843 COG0304 # Protein_GI_number: 15926573 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: 3-oxoacyl-(acyl-carrier-protein) synthase # Organism: Staphylococcus aureus N315 # 1 413 1 413 414 709 88.0 0 MTENKRVVITGMGALSPIGNDAQTNWENALKGVNGIDTITRVDTEEYNVHLAGELKDFNI EDHISKKDARRMDRFTQYAVVAARQAVEDANLTINDDNANRIGVWIGSGIGGMETFEVAH TILKNKGPRRVSPFFVPMLIPDMATGQVSIDLGAKGPNGSTVTACATGTNSIGEAFKIIQ RGAADAMITGGTEAPITHMALAGFSASRALSTNDDKETACRPFQEGRDGFIMGEGAGILV IESLESAQTRGAQIYAEIVGYGSTGDAYHITAPAPEGEGGSRAMQAALDDAGIEAKDIQY LNAHGTSTPVGDLYEIKAIKNTFGDAAKNLKISSTKSMTGHLLGATGGIEAIFSALSIRD SKVAPTIHADSPDPECDLDIVPNESQDLEIEYAMSNSLGFGGHNAVLVFKKFKD >gi|312979641|gb|ACRM01000024.1| GENE 107 110115 - 111056 1330 313 aa, chain - ## HITS:1 COG:SA0842 KEGG:ns NR:ns ## COG: SA0842 COG0332 # Protein_GI_number: 15926572 # Func_class: I Lipid transport and metabolism # Function: 3-oxoacyl-[acyl-carrier-protein] synthase III # Organism: Staphylococcus aureus N315 # 1 313 1 313 313 536 87.0 1e-152 MNVGIKGFGAYAPERVVDNAYFEGFLDTSDEWISKMTGIKERRWSRDDQDTSDLAYEASK KAIEDAGIKPNDIDMIIVATATGDMPFPSVANILQEKLGTGKVPTMDQLAACSGFMYSMI TAKQYVQSGDYKNILVVGADKLSKITDLTDRSTAVLFGDGAGAVVIGEVSEGRGIISYEM GSDGSGGKYLYLNKETGKLVMNGREVFKFAVRIMGEASTRVVEKAGLESDNIDMFIPHQA NIRIMESARERLGIEREKMSVSVNRFGNTSAASIPLSIQQELENGRIKDDDTLVLVGFGG GLTWGAMVIKWGK >gi|312979641|gb|ACRM01000024.1| GENE 108 111282 - 111482 404 66 aa, chain + ## HITS:1 COG:no KEGG:SH1974 NR:ns ## KEGG: SH1974 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 64 1 64 64 82 76.0 6e-15 MKYLVTFIWALILTQMVNFVLNSLNGGGSLDVIKPIIIAIIITIAIAILSAMIKPNDFAR KGNRDV >gi|312979641|gb|ACRM01000024.1| GENE 109 111584 - 114193 1749 869 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 5 857 5 806 815 678 44 0.0 MDINQMTYKVQEALQKAIELSKENELQNIEIEAILKGTLEEDESLFKSILERANIDTDQL NQAYSEKLKHYPSVQGDNVQYGQYIGSKANELLNKAESYMKEYEDDYISMEHILRAAMDI DETTQQFVGNKEEVVKEIITKVRGGNHVTSQNPEVNYEALEKYGRDLVEEVRQGKMDPVI GRDEEIRNTIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPESLLDKTIFELD LSALVAGAKFRGEFEERLKAVLKEVKESDGRIILFIDEIHMLVGAGKTDGAMDAGNMLKP MLARGELHCIGATTLNEYREYIEKDSALERRFQKVGVSEPDVEDTISILRGLKERYEVYH GVRIQDRALVAAAELSDRYITDRFLPDKAIDLVDQACATIRTEMGSNPTELDQVNRRVMQ LEIEESALKNESDNASKHRLEELQEELSNEKEKQTSLQSRVEQEKEKIAKVQEKRAELDR SRQALEDAQTESNYEKAAELQYGTIPQLEKELKEYEEAFHDEQGDNERMIREVVSDEEIG DIVSQWTGIPVSKLVETEREKLLNLSDILHERVVGQDKAVDLVSDAVVRARAGIKDPNRP IGSFLFLGPTGVGKTELAKSLASSLFDSEKHMIRIDMSEYMEKHSVSRLIGAPPGYVGHD EGGQLTEAVRRNPYSVILLDEVEKAHSDVFNVLLQILDEGRLTDSKGRSVDFKNTIIIMT SNIGSQILLENVKDSGEITESTEKAVMDSLHAFFKPEILNRMDDIVLFKPLSINDMSMIV DKILTQLNIRLMDQRISIEVSDEAKKWLGEEAYEPQFGARPLKRFVQRQIETPLARMMIK ENMPEGTKVNVDLNDSQELTFDVQKPLAE >gi|312979641|gb|ACRM01000024.1| GENE 110 114485 - 116299 1767 604 aa, chain - ## HITS:1 COG:SA0834 KEGG:ns NR:ns ## COG: SA0834 COG1835 # Protein_GI_number: 15926563 # Func_class: I Lipid transport and metabolism # Function: Predicted acyltransferases # Organism: Staphylococcus aureus N315 # 4 604 2 604 604 801 67.0 0 MKQNLEKGVHDKTKMRYMPGLDGLRAIAVLGIVIYHLNRKWLTGGFIGVDTFFVISGYLI TSLLLREYEEKGIINLKQFWIRRIKRLLPAVIALLITVGIATLLFEPQQIIRVKHDIIAA LFYVSNWWYIAKDVNYFEQFSFMPLKHLWSLAIEEQFYLFFPFILVILLLTIKKYRNVTL IFWIVSLASLLEMVIISQPNVGYSRVYFGTDTRLQTLLLGVILAFVWPPFKLKVNPPQRL RRAIDGIGIGSLLILIILFFTVNDDNDWIYNGGFYLISLVTLFVIASVVHPSTMIAKFLG HPLLVYIGKRSYSLYLWHFAVISFLHIHFVDGQLPIYVYILDILLTVAFAELSYRYIETP FRREGLSAFSFDRLRRPKFIRTIVTIIAVIPLLLIFMGAFDRFGKDEIANKANSFNTSTA DKYLVKMMPGENIKLNGQTSKSENKDKVYTNISPLLIGDSVMVDIGEEFKSQVPKATIDG KVGRHLQEALIVANNYTNYNKPSNQVVLELGTNGDFTQDELDQLISKFGKAKIYLVNTRV PRSWQDNVNKQLSDAAKRHKNVVLVDWYKRSAGHTEYFASDGVHLEHSGVQALSDEILKN MTKK >gi|312979641|gb|ACRM01000024.1| GENE 111 116784 - 117092 544 102 aa, chain - ## HITS:1 COG:SA0833 KEGG:ns NR:ns ## COG: SA0833 COG2151 # Protein_GI_number: 15926561 # Func_class: R General function prediction only # Function: Predicted metal-sulfur cluster biosynthetic enzyme # Organism: Staphylococcus aureus N315 # 1 101 1 101 102 176 94.0 8e-45 MEEALKDSILGALEMVIDPELGIDIVNLGLVYKVNVDDEGLCTVEMTLTSMGCPLGPQII DQIKTVLAEIPEIQDTEVNIVWNPPWNKDMMSRYAKIALGVG >gi|312979641|gb|ACRM01000024.1| GENE 112 117212 - 118033 912 273 aa, chain + ## HITS:1 COG:SA0832 KEGG:ns NR:ns ## COG: SA0832 COG0561 # Protein_GI_number: 15926560 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 272 1 272 274 414 74.0 1e-116 MKPYLICLDLDGTLLNDNKEISDYTKKVLTSLQKQGHYLMIATGRPYRASQIYYHELNMN TPIVNFNGAYVHHPKADDFETKHEVLDVDIARSIIEALQKANVTNIIAEVRDSVFINNHD PRLFEGFSMGNPKIQTGNLLEKLDESPTSILVEAEEVNITRIKQMLTRFYAENIEHRRWG APFPVIEIVKRGISKARGIDYVKSYLNIDSSNIIAFGDEDNDLEMIKYAQYGIAMDNGLD DLKHIANHITYSNNEDGIGRYLNEFFKLEIPYQ >gi|312979641|gb|ACRM01000024.1| GENE 113 118116 - 119438 1361 440 aa, chain + ## HITS:1 COG:SA0831 KEGG:ns NR:ns ## COG: SA0831 COG0446 # Protein_GI_number: 15926559 # Func_class: R General function prediction only # Function: Uncharacterized NAD(FAD)-dependent dehydrogenases # Organism: Staphylococcus aureus N315 # 1 438 1 438 438 635 71.0 0 MTKIIIVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCGLPYYIGHLVSDRHQIL PITPDVFKEKKNIVVKTHHEVIGVNDQQHVVRVLNHQTGETFDETYDKLILSPGASANTL GFTNDFTFTLRNAEDMDQIDQYITRHKAKRALVVGAGYISLEVLENLYQRGLDVTWIHRS DKVNKLMDQDMNVAIFSEIDQRNISYRLNEEIESIQAHTVYFKSGIREDFDIIIEGIGTH PNSSFLRSSNIHIDKKGFIPVDDCFKTNIPDIYALGDVITSHYRHVNMNAQVPLAWGAHR AANIIAEQLSGNKNITFKGFLGSNIVKFFDYTFASVGIKPEELSLFNYEMVEIKSGAHAE YYPGNTPLHLRVYFNKDNRRLLRAAAVGKQGADKRIDILSMAMMNQLTVDELVEFEVAYA PPYSHPKDLINMIGYKARNI >gi|312979641|gb|ACRM01000024.1| GENE 114 119480 - 119881 620 133 aa, chain - ## HITS:1 COG:no KEGG:SH1980 NR:ns ## KEGG: SH1980 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 133 1 133 133 186 84.0 2e-46 MLHMHIVSWVLTIVLYIIAFLHISKSQGPTPTFKSLHMGLRVFMLLTLFSGFWELIEEFM AASHGEGGNHMLLTLKMLCGLGVVALMEVSLAKRKKHAPSHGLFWATIILIIITMALGII LPWGPLSKMFGLS >gi|312979641|gb|ACRM01000024.1| GENE 115 120008 - 120913 1416 301 aa, chain - ## HITS:1 COG:SA0829 KEGG:ns NR:ns ## COG: SA0829 COG0179 # Protein_GI_number: 15926557 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) # Organism: Staphylococcus aureus N315 # 1 300 1 300 300 538 90.0 1e-153 MKFLSFKYNNAESYGVKVKREDAVWDLKQIFAEFGEGDFHPQTLLEGLQQNQTLDFQEQV RKAVVAVENSGKADQYKFSFNDIEFLPPVTPPNNVIAFGRNYKDHASELNHEVQRLYVFT KAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKHGEKIPKGLALDYVYGYTIINDITD RTAQNAQDQAFLSKSLTGGCPMGPYIVTKDELPTPENVNIVTKVNNEIRQDGNTSQMINK IDDLIQEISKYVALHPGDIIATGTPAGVGAGLQPPKFLQPGDEVKVTIDNIGTLTTYIAK Q >gi|312979641|gb|ACRM01000024.1| GENE 116 121040 - 124705 3536 1221 aa, chain - ## HITS:1 COG:SA0828 KEGG:ns NR:ns ## COG: SA0828 COG1074 # Protein_GI_number: 15926556 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) # Organism: Staphylococcus aureus N315 # 4 1217 3 1217 1217 1519 65.0 0 MNNIPVKPKDAQWTDAQWNSIYAKGQDILVAAAAGSGKTAVLVERIIQKILKDEVDVDKL LVVTFTNLSAREMKHRVEQRIQQASLEDPKNEHLKSQRIKIHQAQISTLHSFCLKVIQQH YDVIQLDPNFRTISEVENVLLLEQSIDEVLEHHYEDPDIEFLTLVEQLSNDRNDDRFREI LKRFYYFSIANPSPFKWLDSLVDPYENDEKQQDYLKELKILAEIYMKAAFDSLLEAENLL SHCNAVEKHLEVVQREKMICQRILEDGVLNRDALLNHTPEKFPQMSSKIKKENEDLETLE DIKSFYKEYNETIQNVKNKYLMRSVDELKDDMKQLAPRIKYLVQIIKDIINDFAKKKRSR NVLDFADYEHFALQILTDENGTPSTIAKEYRHQFEEILIDEYQDTNQVQEAIISTIKRGD ELDGNLFMVGDVKQSIYKFRQADPTLFMSKYHRFTKEGQQTGLRIDLSNNFRSRKEVLST TNYLFDHMMDEAVGEINYDADARLYFGAHYYPEKAMPLELHALIKSENEDIDLDRQEQEA YYVVEQVKHILDNKLVYDAKNNAYRKATYKDIVILERGMSNARRLQKVFKDNNIPFHVNS KEGYFEQTEVRLVLSFLRTIDNPLQDIYLVGLMRSVIYQFTEDELAEIRVVSSNDDYFYQ SILHYIKYDQANAQLVNKLRRFIEDIHLYQDYGQTHPVYQLIDKFYNDHYVIQYFSGLIG GKGRRANLFGLFNKAIEFENSTFRGLYQFIRFIDELIERKKDFGEENVIGPNDNVVRMMT IHSSKGLEFPYVIYSGLSKNFNKEDIRKPLVLNQKYGLGMEYYDLTNNISYPSLSSVVVK SLTEKELISEEMRLMYVALTRAKEQLILIGTVDKEEKLRKYERLPISNQLIALHKRLSVE RPFNLVYSILAKHLSQSITSDYQFETSINQLDDSLKPYVDLKIIHFDELSLIGDSNETLH RTINDIEEEAPNNKESEQQMIHQLTFKYPFIKNTQKPSKQSVSELKRQLETKEDGTSYDR VRQYRIGAYTYERPKFLRQERKRKANEIGTLMHTVMQHLPFREQRLTETELDDYIHMLID QHIIEEDAKKDIQFERIMEFIRSDLYMKIAQADEVYRELPFVVNQARVDEIPDLDEDVSI IQGMIDLIFIKDNQYYFVDYKTDAFNRRRGMTDQEIGIQLRDKYKIQMKYYKNTLETILN KRVHGYLYFFQFGEMSIEDGL >gi|312979641|gb|ACRM01000024.1| GENE 117 124698 - 128186 3387 1162 aa, chain - ## HITS:1 COG:SA0827 KEGG:ns NR:ns ## COG: SA0827 COG3857 # Protein_GI_number: 15926555 # Func_class: L Replication, recombination and repair # Function: ATP-dependent nuclease, subunit B # Organism: Staphylococcus aureus N315 # 1 1155 1 1150 1157 1598 69.0 0 MELNTYLGRAGTGKSYHMIKNIKQQMKENPLGDPIILIAPTQSTFQLEQSFVNDRELNGS LRTEVLHFERLSYRIFQELGGLTETRLTKAAIEMMIFNIVQQHKSEMKLYQSQADYYGFS EKLSEQIQDFKKYSVTPHQLDLFLEDNELQTRTRHKLEDISLIYHYFEERLNGEFITAED SLNYFIEIMHKSEWIKHADIYIDGFYNFSTLEYQIIKALVQNAKQVTILLTTDGNEDHFS MFRKPSDVLIHLKEIANELHIPLNEHYFTTPYRFKNKDLLQLEQQFDALQVNPTQSHGYI DLLESSNMREEVNEIARRIIKDTRDKHFRYQDIAILYRDETYAYLFESILPQYDIPYNID TKKSMTHHPIMEMIRSLLEVIQSNMGLSPMMRLFKTNILSNQFKNSSYLIDLLENFVIER GIYGKKWLDDKLFNIDNFTKMGRKAHQLTEEEKEAFEDVVRLKDDVVNKILRFEKAMLHS KNVRDYATAFYETMEAFDLPKYLMAHRDELDLKGDHEKAEEIDQLWNGLIQILDDLVTVF EEEEMSLNRFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKKHVYMVGMNDGVMP QPLSSSSLITDEEKRLLEERGSVELSPTSDILQMDEAFVCYIAMTRACEQMTFSYSLMGM QGDEKEKSPFLNQIQALFSNLDIKNIHYLHHAYPLTLMEHPHQTKIHLFEALKSWLEEEA VADTWLDAYKVISENEELNDSINYLSTALTYDNETIQLTPQLSEALYGTSINASVSRFEG YNDCPFQHYATYGLRLNERTKYQLESFDLGNIFHNALKYISDKVNGEFSQLDNQKIHALT EEALQHVLPQVQFNLMDSNAYYRYVSKRIGVIVESTLKALRYQNENTKFRPKRFETAFRK KPRTEEELIAHPLMTTQGIPIHIRGQIDRIDAYTKNNTSFVNIIDYKSSNHSANLNLKKV YYGKQMQMMTYMDIVLQNSERLGLSSEVKPGGLLYFHIHDERLKFEKWGDLTEEALNKEN INQAILKEYKLKGLINSGAEVIDAMDIRLNEISKSDIVPVTLKKDGGISARGSQVADETT IHKFIQHNKNNFIETASNIMDGHTEVAPLKFEDKLPCEFCSFQSVCHVDSLIDSKHYRHV DESINPIQAIQEVELESGEDNE >gi|312979641|gb|ACRM01000024.1| GENE 118 128314 - 128880 569 188 aa, chain - ## HITS:1 COG:SA0826 KEGG:ns NR:ns ## COG: SA0826 COG0681 # Protein_GI_number: 15926554 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 187 1 187 191 272 71.0 3e-73 MKKEITEWIVAIAVGLLLVWLVVTFVAKSYTIKGDSMDPTLKDGQHVMVNILGYKVGNIK KGNVIVFHANQSDDYVKRVIGVPGDSVTYKKDQLYINGKKVNEPYLDYNEKHKQGEYITG SFETKDLLNAHPNSNVIPKNKYLVLGDNREVSKDSRAFGLIDKQQIVGKVSFRFWPLNNF KFNFNPDK >gi|312979641|gb|ACRM01000024.1| GENE 119 128895 - 129419 399 174 aa, chain - ## HITS:1 COG:SA0825 KEGG:ns NR:ns ## COG: SA0825 COG0681 # Protein_GI_number: 15926553 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Signal peptidase I # Organism: Staphylococcus aureus N315 # 1 172 1 172 174 175 54.0 3e-44 MRRIISTSISIILAIIFVMFIQIFLLRSAIVHTNEMAPTLNKNDYIMINKLKVTFNLLNE GDIIMYRHHNQIHFSRIIGKAGESIEIRHGKLYKDDRQVNKYYAKNRDINDFALRDLENT DGDIIPPDSFLVLNDHSNTLTDSRRYGLIKKSDVIGNVCLRYYPFRSFNYEFNK >gi|312979641|gb|ACRM01000024.1| GENE 120 129424 - 129735 249 103 aa, chain - ## HITS:1 COG:SA0824 KEGG:ns NR:ns ## COG: SA0824 COG0398 # Protein_GI_number: 15926552 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 103 89 191 191 120 56.0 8e-28 MKKLTHFIDKQGLVPIFILMCFPFTPNTVVNFVASFSHIKMKNYFIILLFSKLISISFLA VMGREVTTFLTHPIRAIILIIVTIVIWFIGKRVEKHFMGTHEE >gi|312979641|gb|ACRM01000024.1| GENE 121 129707 - 129997 194 96 aa, chain - ## HITS:1 COG:SA0824 KEGG:ns NR:ns ## COG: SA0824 COG0398 # Protein_GI_number: 15926552 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 94 3 95 191 105 51.0 2e-23 MFHQIEHWFNVLQQLGYIAGFIILYLRAIIPVFPLTLYVILNVHIYGFITGTIISWLGIV AGTFTVFYFCRKFVDTSFMQRVKAKKRCEKTHTFYR >gi|312979641|gb|ACRM01000024.1| GENE 122 130368 - 131699 2088 443 aa, chain - ## HITS:1 COG:SA0823 KEGG:ns NR:ns ## COG: SA0823 COG0166 # Protein_GI_number: 15926551 # Func_class: G Carbohydrate transport and metabolism # Function: Glucose-6-phosphate isomerase # Organism: Staphylococcus aureus N315 # 1 443 1 443 443 795 89.0 0 MTHIQLDYGKTLEFFGQHELDQQKDIVKTIHKTIHEGTGAGSDFLGWVNLPEDYDKEEFS RIQKAAKHIQSNSDVLVVIGIGGSYLGARAAIEMLTSSFRNNTEYPEIVFVGNHLSSSYT QELVNYLSDKDFSVNVISKSGTTTEPAVAFRLFKQLVEEKYGKDEAKKRIFATTDKAKGA LKQLADNESYETFVVPDDVGGRYSVLTAVGLLPIATAGIDIEAIMNGANKARKELSSENL EENIAYQYATIRNVLYNKGYTTEMLINYEPSMQYFNEWWKQLYGESEGKDFKGIYPSSAN YTTDLHSLGQYVQEGRRFLFETVVKVNQPKHDITIEKDDDDLDGLNYLAGKTIDEVNTKA FEGTLLAHTDGGVPNIVVNIPRLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYK QNMFALLGKPGYEDKKKELEERL >gi|312979641|gb|ACRM01000024.1| GENE 123 131903 - 131998 70 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MINTIPIIFILHKYVKKWFYFQKQSVSIELY >gi|312979641|gb|ACRM01000024.1| GENE 124 132026 - 133228 1665 400 aa, chain + ## HITS:1 COG:SA0822 KEGG:ns NR:ns ## COG: SA0822 COG0137 # Protein_GI_number: 15926550 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate synthase # Organism: Staphylococcus aureus N315 # 1 400 1 400 401 735 88.0 0 MKDKIVLAYSGGLDTSVAVKWLIDKGYDVVAVCLDVGEGKDLDVVYSKALDMGAVECHII DATKEFSEDYVSYAIKGNLMYENSYPLVSALSRPLIAKKLVEIAEQTKSIGIAHGCTGKG NDQVRFEVAIKALNPNLKTFAPVREWGWSREEEIDYAIKHGIPVSINHDSPYSIDQNLWG RANECGILEDPYAAPPKDAYDLTAELEDTPDTPDEIILSFKNGVPVQLNHKDYDLDQLIL TLNDLAGKHGIGRIDHVENRLVGIKSREVYETPGAEVILKAHKALETLTLTKDVAHFKPV IEKQFAEQTYNGLWFSPLTDSLKQFIDSTQHYVEGDVRVKLFKGNAIVNGRKSPYTLYDE KLATYTKEDAFDQSAAVGFIDIYGLPTQVNAYLHGGYSNE >gi|312979641|gb|ACRM01000024.1| GENE 125 133221 - 134600 1678 459 aa, chain + ## HITS:1 COG:SA0821 KEGG:ns NR:ns ## COG: SA0821 COG0165 # Protein_GI_number: 15926549 # Func_class: E Amino acid transport and metabolism # Function: Argininosuccinate lyase # Organism: Staphylococcus aureus N315 # 1 459 1 459 459 728 78.0 0 MSNKAWGGRFQQQPEEWVDAFNASIDFDQTLLDEDIQGSIAHATMLAHQNIISEEEKNAI VKGLKDIQADFHNHNIEFKHALEDIHLNIEHELIQRIGDPGGKLHTGRSRNDQVATDLHL YVKKQVIEIQALIRSFQESILTLAKSHVETIMPGYTHLQRAQPISFAHHIMTYFWMLERD YTRFADSLKRIDISPLGAAALSGTTHPIDRHETQELLGFEYIYENSLDAVSDRDYIIETL HNISLTMTHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRT TGHLMSMLVTLKGLPLAYNKDLQEDKEGLFDSVRTMKGSLRIFEGMLNTLTVNTNRLNET VHQDFSNATELADYLVDKNVPFRTAHEIVGKIVFECIQQGIYLLDVPFERYQELNDKIEE DVYDYLKPENCLNRRKSYGSTGQDAVRHQLNVAENILKQ >gi|312979641|gb|ACRM01000024.1| GENE 126 135071 - 136084 1176 337 aa, chain + ## HITS:1 COG:SA0820 KEGG:ns NR:ns ## COG: SA0820 COG0584 # Protein_GI_number: 15926548 # Func_class: C Energy production and conversion # Function: Glycerophosphoryl diester phosphodiesterase # Organism: Staphylococcus aureus N315 # 71 334 45 308 309 377 72.0 1e-104 MKVSKKAMISSLAIATIGLVTLYNPVEANNNHNNHSNASNSATAHQQFNQSQNKYTSVAI SKHRNQDHSNWMTNLTGERFTTIAHRGASGYAPEHTLYAYDKSHNELEASYIELDLQRTK DGQLVAMHDETVDRTTTGTGRVEDYTLAQLKQLDAGSWFNNAHPEYAKPEYKNAKVPTLD EILSRYGTKANYYIETKNPNVYPGMEEQLLETLKKHHMLTGNSLNHGHILIQSFSEESLQ KMHQLDSSVPLIQLLDKNELQQQSEADLQHIHSYAIGVGPDYTSLNAENTKHLKDLGFLI HPYTVDKTTDMQRLNQYGVDGLFTNFADKYKATIPNE >gi|312979641|gb|ACRM01000024.1| GENE 127 136160 - 137404 1797 414 aa, chain - ## HITS:1 COG:SA0819 KEGG:ns NR:ns ## COG: SA0819 COG0334 # Protein_GI_number: 15926547 # Func_class: E Amino acid transport and metabolism # Function: Glutamate dehydrogenase/leucine dehydrogenase # Organism: Staphylococcus aureus N315 # 1 414 1 414 414 808 93.0 0 MTENNNLVTSTQSIIKEALHKLGFDDGMYDLIKEPLRFLQVRIPVCMDDGTVKTFTGYRA QHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHE VERLSRGYVRAISQFVGPTKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVL GGSQGRDRSTALGVVIAIEQAAKRRGKEIKGSRIVIQGFGNAGSFLAKFLNDIGAKVVGI SDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEDTISNKELFELDCDILVPAAISNQITE DNAHDIKADIVVEAANGPTTPEATRILTERDILLVPDVLASAGGVTVSYFEWVQNNQGYY WSEDEVNKKLREKLIEAFDTIYELAQNRKIDMRLAAYIVGIKRTAEAARYRGWA >gi|312979641|gb|ACRM01000024.1| GENE 128 137512 - 138702 1511 396 aa, chain - ## HITS:1 COG:SA0818 KEGG:ns NR:ns ## COG: SA0818 COG4992 # Protein_GI_number: 15926546 # Func_class: E Amino acid transport and metabolism # Function: Ornithine/acetylornithine aminotransferase # Organism: Staphylococcus aureus N315 # 1 396 1 396 396 737 88.0 0 MTKSEKIIELTNHYGAHNYVPLPIVVSEAEGIWVTDPEGNKYIDMLSAYSAVNQGHRHPK IIQALKHQADRVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRW AYDVKGIEPNQAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLEGFRKVDFGNEAQLK EAINENTAAVLVEPIQGEAGINIPPEGYLKTIRDLCNEHNILFIADEIQAGLGRSGKLFA CDWDNVKPDVYILGKALGGGVLPISVVLADNEVLDVFTPGSHGSTFGGNPLACAVSIAAL DVIIDENLPEHSNELGEYFKSELQKINHPAIKEVRGRGLFIGMELHESARPFCEALKEKG LLCKETHDTVIRFAPPLVITKEELDEALNRIRSVFK >gi|312979641|gb|ACRM01000024.1| GENE 129 138971 - 140098 1497 375 aa, chain - ## HITS:1 COG:SA0817 KEGG:ns NR:ns ## COG: SA0817 COG1902 # Protein_GI_number: 15926545 # Func_class: C Energy production and conversion # Function: NADH:flavin oxidoreductases, Old Yellow Enzyme family # Organism: Staphylococcus aureus N315 # 1 375 1 375 375 603 76.0 1e-172 MNNKYKKLFEAVTLPNGVSLRNRFVLAPLTHTSSNDDGTISDVEISYIEKRAKDVGLAIN AASNVNDIGKAFPGQPSVAHDSDIQGLKRLATAMKKNGAKALVQIHHGGAQALPELTPNG DVVAPSPVSMKSFGQQQEHHAREITTEEIEQTIKDFGEATRRAIEAGFDGVEIHGANHYL IHQFFSPYYNRREDEWGDHLKFPLAVIDEVLKVKETYANKDFIVGYRLSPEEAESPGISM EHTEKLIKTITKKAIDYVHISIMDIHSQTREGKYEGEERLKLIHQWVDGRIPVIGIGSVF SADDALDAVESTGIELVALGRGILLDYNFVNKIEEGKEEEIISYFDPNREDKHALPPNLW EQFNKGFYPLPRKDK >gi|312979641|gb|ACRM01000024.1| GENE 130 140273 - 140656 203 127 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|30264941|ref|NP_847318.1| general stress protein 13 [Bacillus anthracis str. Ames] # 1 120 1 111 114 82 40 1e-14 MNTHYKEGQHIKVRVTGIQPYGAFVETPDHTEGLIHISEIMDDYVHNLKKFLSEGQIVKA KILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIKETEKYGFQTLEERLPVWIKQSK RAIRNNN >gi|312979641|gb|ACRM01000024.1| GENE 131 140884 - 141486 827 200 aa, chain - ## HITS:1 COG:SA0815 KEGG:ns NR:ns ## COG: SA0815 COG0652 # Protein_GI_number: 15926543 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family # Organism: Staphylococcus aureus N315 # 1 197 1 197 197 353 88.0 1e-97 MTNYPQLNKEIQDNEIKVIMHTNKGDMTFKLFPEIAPKTVENFVTHAKNGYYDGITFHRV INDFMIQGGDPTATGMGGESIYGGSFEDEFSLEAFNLYGALSMANAGPNTNGSQFFVVQM KEVPDTMLNQLVDGGWPEPIAKAYADKGGTPWLDQKHTVFGQLIDGETTLEDIANTKVGA QDKPVHDVVIESIDVEDKKA >gi|312979641|gb|ACRM01000024.1| GENE 132 141555 - 141935 474 126 aa, chain + ## HITS:1 COG:no KEGG:SH1998 NR:ns ## KEGG: SH1998 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: Two-component system [PATH:sha02020] # 1 126 1 126 126 179 84.0 2e-44 MLYRFSHKTGAYGVTIKEDSDHQVLVQIEQVIKHPKQGDLHHPGETEGVFFHERRALSHY EKRYATRSQLRDFNVEEMKYEDSLQQAITKMENELKQQHTEYAKLALDNLNSLKKDYSIQ YKQNFF >gi|312979641|gb|ACRM01000024.1| GENE 133 142068 - 144470 2475 800 aa, chain + ## HITS:1 COG:SA0813_1 KEGG:ns NR:ns ## COG: SA0813_1 COG1009 # Protein_GI_number: 15926541 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Staphylococcus aureus N315 # 1 642 1 642 643 834 74.0 0 MSLIHIAVLLPLIFALIIPILYRFFKKIHLGWFVLPVPVVLFIYFLTYISTTQSGNTVIK TFNWMPHIGMNFDIYLDGLSILFSLLITGIGSLVVLYSIGYLDKSERLGNFYCYLLLFMG AMLGVVLSDNIIILYLFWELTSFSSFLLISFWREKKASIYGAQKSLIITVFGGLSLLGGL ILISLAGQSLSLHYLIHHVSQIQDSSFFTLAMVLIMLAAFTKSAQVPFYIWLPDAMEAPT PVSAYLHSATMVKAGLYLVARLTPLFAVSEGWIWTITLVGLITLFWASLNATKQQDLKGI LAFSTVSQLGMIMSMLGIGAISYHFEGSESQLYIAGFTAAAFHLINHATFKGALFMITGA IDHVTGTRDVKKLGGLLTIMPISFTLTVITALSMAGVPPFNGFLSKEKFLEAMIEATHAP LFSLNTLGIIFPILAIVGSIFTFVYSIKFVLHVFFGKYHSDLLPKKAHEASLLILISPAI LATLVVVFGLFPGLLTHSIIEPATKAISGISTIHAEFHMFHGITPAFISTLTIWIVGIIL LFTFNYWIRLLKAQPDNLKLNYWYDTTGKWLPNHSASLTNYYVNGYVRDSLVFIFGTLIV LTLITLVSVPFSFNFKNINTIHIYEMIIIIILTISAFLVVTATSRLFSIIMLSVVGYAVS VLFVFFKAPDLALTQFVVESISTGLFLLCFYHLPNLNRYNEKTSFKLTNAIISIGVGLAV TMLGLIAYGNRHFSSIGEYYKAHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAV YTMIKLRSKRNKTSEVESNE >gi|312979641|gb|ACRM01000024.1| GENE 134 144463 - 144891 438 142 aa, chain + ## HITS:1 COG:SA0812 KEGG:ns NR:ns ## COG: SA0812 COG2111 # Protein_GI_number: 15926540 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhB subunit # Organism: Staphylococcus aureus N315 # 1 142 1 142 142 171 73.0 5e-43 MNRQNNNLMFQYSAVIIAFLIALFGITLFLAGHYTPGGGFVGGLLLSTALTIIMIAFDIK TMRKIFPWDFKILIGIGLLFCVSTPIASWFYGKNFFTHTEFNIPLPLLHPVHMNTPMFFD FGVMCAVIGTVMTIIITIGENE >gi|312979641|gb|ACRM01000024.1| GENE 135 144891 - 145238 388 115 aa, chain + ## HITS:1 COG:SA0811 KEGG:ns NR:ns ## COG: SA0811 COG1006 # Protein_GI_number: 15926539 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhC subunit # Organism: Staphylococcus aureus N315 # 1 113 1 113 113 169 84.0 2e-42 MEIIMIIVCGILTSISVYLVLSKSLIRIIMGTTLITHASNLFLITMGGLKHGEMPIYEKD IHHYVDPIPHALILTAIVIAFATTAFFLVLAFRTYKELGTDNIEQMKGVPSDDSN >gi|312979641|gb|ACRM01000024.1| GENE 136 145225 - 146724 1574 499 aa, chain + ## HITS:1 COG:SA0810 KEGG:ns NR:ns ## COG: SA0810 COG0651 # Protein_GI_number: 15926538 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Staphylococcus aureus N315 # 1 498 1 498 498 558 71.0 1e-158 MIATNMVVLTLVIPIITAIILIFLGQRYPLKRAVTLIGLVLTLIVAMVNLINVSKFGPLK VELGSWPAPYGIIFLLDTLGAMLIVTSIIITLLITIYSFSTAGIDRERYYFHFSIVFMLV GIIGAFTTGDIFNLFVFFEVFLMSSYALLVLGGTRIQLQETVKYLLINVVTSTFFVIAVG ILYSIVGTLNMADISVKLNELSHSHQGLLSIVFILFIFVFATKAGVFPLYVWLPGSYYAP PFAIIAFFGALLTKVGVYAILRTLSLFFHNTMSFSHYTILFLALLTIIFGSIGAIAYYDI KKIILYNIMIAVGVILVGVAMMSKLGIIGAIYYTIHDMLVKSALFLIIGVMYQITKTSNL KSFGGLIKTYPILGWSFFIAALSLAGIPPFSGFYGKYFIVKAAFEKGFYISAIIVLLSSL IVLYSVIRIFLHGFFGEPKGYKMNNKVNVKQATIVSVIAVVITVLFGLSADALYPFISEA AKSFYDPNVYIKSVLGGRY >gi|312979641|gb|ACRM01000024.1| GENE 137 146724 - 147203 493 159 aa, chain + ## HITS:1 COG:SA0809 KEGG:ns NR:ns ## COG: SA0809 COG1863 # Protein_GI_number: 15926537 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhE subunit # Organism: Staphylococcus aureus N315 # 1 158 1 158 159 212 70.0 2e-55 MALQFVLNIILAIIWMFLSGSYTFNNFLLGFLIGIGLVYLFKKVLPGSFYLKRVYKVIKL IVVFFIELMKANIDVSKIVLQPRLKNQPGFFIYHTDLKHDWQIVLLSNLITLTPGTVVLG ISDDRTKIYIHSIDFSTKEEEVESIKSSLEKVVREVGEA >gi|312979641|gb|ACRM01000024.1| GENE 138 147203 - 147493 478 96 aa, chain + ## HITS:1 COG:SA0808 KEGG:ns NR:ns ## COG: SA0808 COG2212 # Protein_GI_number: 15926536 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhF subunit # Organism: Staphylococcus aureus N315 # 16 94 17 95 97 87 68.0 7e-18 MVKTIIIIALIVVVLSMLAMFIRIIKGPTLPDRVLALDAIGLQLMACVALYSVFIGSQYL LVVILLIGILAFLGTAVFSKFIDKGKVIERDSKNRH >gi|312979641|gb|ACRM01000024.1| GENE 139 147471 - 147827 442 118 aa, chain + ## HITS:1 COG:SA0807 KEGG:ns NR:ns ## COG: SA0807 COG1320 # Protein_GI_number: 15926535 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhG subunit # Organism: Staphylococcus aureus N315 # 1 118 1 118 118 143 67.0 7e-35 MIAKIVISLAIIFIILGALISAITAIGIIRLKDVYSRGHAAGKSATLGAIFLLFGTFLYF IGTEGYANMQLIFGIIFILITGPLSSHLMMKASYNNKTPYTKDTKIDELKDEFNNKKI >gi|312979641|gb|ACRM01000024.1| GENE 140 147937 - 149097 1163 386 aa, chain + ## HITS:1 COG:no KEGG:SH2006 NR:ns ## KEGG: SH2006 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 379 1 379 388 501 64.0 1e-140 MHWTIIGGGIQGTTIAIKLREAGISIQNLTIIDPHDSLCEQFHKYTNRIDMSYLRSPIVH HIHPDPFHLKKFAKMNQYINPTFDRYQRPQTEMFMDHTYAQIHNYHLNQCHIQSYVQRIE KKQRKWSITTSHHSVIQTDCVVLAQGCHNEPFIPSAFTQAKDVCHIFSDHFNSQLFSQSS HVIGSGISAAHLTLKLLKLDKNKIVHLWMNKNIDIQHFDADPGWLGPKKMKAFLNHSSHE EKLQTVLKERHKGSMPRELYLRLKKYVQNKRLIIHKEEIKDLKSHQIVTENLNIPYDYIL LATGFKSSIFQQPMIQSLIQNANAPLLSCGFPNITHELEWLPHLFVAGGLADLELGPFAR NIMGGKEAAQRIYSVFQRIDHHREVS >gi|312979641|gb|ACRM01000024.1| GENE 141 149154 - 149528 535 124 aa, chain - ## HITS:1 COG:SA0805 KEGG:ns NR:ns ## COG: SA0805 COG2050 # Protein_GI_number: 15926533 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Uncharacterized protein, possibly involved in aromatic compounds catabolism # Organism: Staphylococcus aureus N315 # 1 124 1 124 124 185 73.0 2e-47 MSNLLETFDMKIETVDEGIVVISMPVTDKVKQPFGYLHGGASIALGETACSLGAAHLIDT KHFIPLGLEMNANHIHSVKEGRVIATASIIHKGHTTQVWNIEIKSEQDKLISIMRGTIGI KPLK >gi|312979641|gb|ACRM01000024.1| GENE 142 149547 - 150866 1698 439 aa, chain - ## HITS:1 COG:SA0804 KEGG:ns NR:ns ## COG: SA0804 COG2056 # Protein_GI_number: 15926532 # Func_class: R General function prediction only # Function: Predicted permease # Organism: Staphylococcus aureus N315 # 1 439 1 438 438 647 83.0 0 MFNAVVIAVILMIILCLLRLNVIISLFISSLVGGLISGMSLNKVISVFGKNIVDGSEVAL SYALLGGFAALISYSGITDYLVNKIIRAIHTENSRLSRIKVKVIIILVLLAMSIMSQNLI PVHIAFIPIVIPPLLSLFNDLKIDRRLIGLVIGFGLCWPYVLLPYGFGQIFHQIIQSGFQ KAHHPIEFNMIWKAMLIPSLGYIVGLVIGLFVYRKPREYKQERLKDNGEEVAEIRPYVLV ITIVAIFATFLVQTFTDSMIFGALAGVLIFFISGIYKWNELDSQFVEGIKIMSFIGVVIL SANGFAGVMNATGDIEKLVSSLTEITNGHKLITIIAMYIVGLIVTLGIGSSFATIPIIAA LFIPLGSSLGLDNMALIALVGTAAALGDSGSPASDSTLGPTAGLNVDGQHDHIRDTCIPN FLFYNVPLMIFGTIAAMVL >gi|312979641|gb|ACRM01000024.1| GENE 143 151071 - 152549 1520 492 aa, chain - ## HITS:1 COG:SA0803 KEGG:ns NR:ns ## COG: SA0803 COG0260 # Protein_GI_number: 15926531 # Func_class: E Amino acid transport and metabolism # Function: Leucyl aminopeptidase # Organism: Staphylococcus aureus N315 # 5 490 7 490 491 588 60.0 1e-167 MIHFNYDSNKMTDVIILGVPDHLNQIGKITYQNSDLTQTIENDRHRHIVSSQLGKTSSTI LYINNEPKRLITVGLGNLKTLSYASFLKVFGTLFQYLKKERVTEANVLFETFNSKQIDKT SIAEIFGLQSRQSIYEFNNYKSNKSTPYQLELYIESSNSDEDIKNIKAGYLIGESVNIAR DFSNMPPNILTPEYFANKVAHHFKSSSVSVDIKNNDTLLSEGFGLLHAVGKGSTHPPVVI TLTYHGTDKNEAPIALVGKGITYDSGGYSIKSKMGMQTMKFDMCGAANVVGMIDAASKLS LPVNIVGVIVSAENMISQQAMKPDDVYTALNGETVEVLNSDAEGRLVLGDGVFYANQFQP RLICDFATLTGAAIAALGEDKAALFSSNADEDMKHILESAREVDEFAFELPITQTEQQLI RNTDVADLVNHTNGQGKALFAAAFVTHFSGQTPHIHFDIAGPATINKDNYKGPKGPTGSM IMTIVNWLRQSK >gi|312979641|gb|ACRM01000024.1| GENE 144 152649 - 153857 1799 402 aa, chain - ## HITS:1 COG:SA0802 KEGG:ns NR:ns ## COG: SA0802 COG1252 # Protein_GI_number: 15926530 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Staphylococcus aureus N315 # 1 402 1 402 402 672 82.0 0 MAQNRKKVLVLGAGYAGLQAVTKLQKEISANEAEITLVNKNKYHYEATWLHEASAGTLNY EDLIYPIESVIDKNKVNFINAEVTKIDRNAKKVETTHGIFEYDILVVALGFESETFGING MKEHAFQIENIHTARELSRHIEDKFANYAASKEKDENDLAILVGGAGFTGIEFLGELTDR IPELCNKYGVDQNKVRITCVEAMPKILPMFSENLVNYVVNYLEERGVEFKIGTPIVACNE KGFKVKTNDQEQQLEANTAVWAAGVRGSQLMEESFEGVKRGRIVTKQDLTIDGHDDIFVI GDVSAFIPAGEERPLPTTAQIAMQQGAHVAKNIENILNGQATTDFEYIDRGTVCSLGSHD GVGHVFGRDITGKKAAFMKKVIDTRAVFKMGGVGLAFKKGKF >gi|312979641|gb|ACRM01000024.1| GENE 145 154185 - 154544 471 119 aa, chain - ## HITS:1 COG:SA0801 KEGG:ns NR:ns ## COG: SA0801 COG0316 # Protein_GI_number: 15926529 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 119 1 119 119 210 90.0 6e-55 MPTVTLTEAAAYEVKDMLKSNHMENGYLKIKVNGGGCTGLTYGMSAEEAPGSNDEVLEYY GLKVLVDKDDAPVLNGTKIDFKQSLMGGGFQIDNPNAIASCGCGSSFRTAKVAGHPENC >gi|312979641|gb|ACRM01000024.1| GENE 146 154557 - 154802 242 81 aa, chain - ## HITS:1 COG:SA0800 KEGG:ns NR:ns ## COG: SA0800 COG4844 # Protein_GI_number: 15926528 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 74 1 74 78 117 72.0 5e-27 MFPLVEFCISNMAKGGDYVYDKLESDPEVDVLEYGCLNNCGLCSSGLYALVDGEVVEGDT PEDLLNNIYKHIEENDFTNLL >gi|312979641|gb|ACRM01000024.1| GENE 147 155116 - 156180 1351 354 aa, chain + ## HITS:1 COG:SA0799 KEGG:ns NR:ns ## COG: SA0799 COG1252 # Protein_GI_number: 15926527 # Func_class: C Energy production and conversion # Function: NADH dehydrogenase, FAD-containing subunit # Organism: Staphylococcus aureus N315 # 1 354 1 354 354 621 83.0 1e-178 MKNLVLLGGGYGNMRIMSRILPDVLPQEYTLTLIDRMPFHGLKPEFYALAAGTKSDSDVR MNFPNSHRVNTIYGEISDIDLDNQIISVGQTKVDYNELIIGLGCEDKYHNVLGAKEYTHS IQTLSKARETFHSISELPKGARVGIVGAGLSGIELASELRESRTDLEIILYDRGPRILRN FPEKLSNYIAKWFRENNVNVVPNSLIDKVEQGTIYNNGTPEPVDIVVWTAGIQPVEIVRK LPIDTNKSGRVIVNQYHQVPTYKNVYVVGDCAALPHAPSAQLAEVQGDQIADVLKKQWNH EPLPEKMPELKVQGFLGSLGEKKGFAYIMDRTVTGRLAHILKSGVLWLYKYHNG >gi|312979641|gb|ACRM01000024.1| GENE 148 156272 - 156595 333 107 aa, chain - ## HITS:1 COG:SA0798 KEGG:ns NR:ns ## COG: SA0798 COG4837 # Protein_GI_number: 15926526 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 6 106 1 101 102 154 74.0 5e-38 MTKVSVVVYGADVVCASCVNAPTSKNTYEWLKPLLERKYPNIHFEYTYIDFQKETENLSD HDQQYIEQIENDELFYPLITMNDEYVADGYIQSKKVTHFIDQYIINN >gi|312979641|gb|ACRM01000024.1| GENE 149 156699 - 156941 417 80 aa, chain + ## HITS:1 COG:SA0797 KEGG:ns NR:ns ## COG: SA0797 COG0694 # Protein_GI_number: 15926525 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Thioredoxin-like proteins and domains # Organism: Staphylococcus aureus N315 # 1 80 1 80 80 149 95.0 1e-36 MPTENATMFDQVAEVIERLRPFLLRDGGDCTLVDVEDGIVKLQLHGACGTCPSSTITLKA GIERALHEEVPGVIEVEQVF >gi|312979641|gb|ACRM01000024.1| GENE 150 157006 - 158166 1317 386 aa, chain - ## HITS:1 COG:SA0796 KEGG:ns NR:ns ## COG: SA0796 COG3966 # Protein_GI_number: 15926524 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) # Organism: Staphylococcus aureus N315 # 1 378 1 378 391 504 64.0 1e-142 MKFKPFLPILISGIIFLAFVLMPASWFTGLVNNKTLADNRTSLTDQVLKGTLIQNQLFSN DKYYPLYGSSELNKRDPFNPAIAMHHRKNTKPVFLVGTGGNTDLINAIELAGQYDQLKGK KMTFIISPQWFSTHGVNDMDMAARTTPNQINQIFQQKDMPSELKQRYAKRLLKFRSVPNK EYLKELVKDPSNPKGRYISKFKESQLLKIEAIKTYFSLDKSPLTHVHSLTSPNDSWKNMS NKAVQLGEKRSTSNGYGIRNEYWKKLMHKKPMNRRQYEFKMNSPEFKDLSLLVDTMHQAG ADVQYVILPVNGKWYDHLGIHRSTREPVYKKIHKTVVGHGGKVYDMSNKDYEKYVLSDVV HVGWKGWVYMDRQIEKHMNDYQAHSK >gi|312979641|gb|ACRM01000024.1| GENE 151 158163 - 158399 483 78 aa, chain - ## HITS:1 COG:SA0795 KEGG:ns NR:ns ## COG: SA0795 COG0236 # Protein_GI_number: 15926523 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl carrier protein # Organism: Staphylococcus aureus N315 # 1 78 1 78 78 111 92.0 3e-25 MEFREQVLDVLADVAENDVVKENPDVEIFEEGIIDSFQTVGLLLEIQNRLGIEVSIMDFD RDEWATPNKIVEALEELR >gi|312979641|gb|ACRM01000024.1| GENE 152 158415 - 159629 1219 404 aa, chain - ## HITS:1 COG:SA0794 KEGG:ns NR:ns ## COG: SA0794 COG1696 # Protein_GI_number: 15926522 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted membrane protein involved in D-alanine export # Organism: Staphylococcus aureus N315 # 1 404 1 404 404 591 81.0 1e-168 MIPYGTFTFFLVAFIVLLPVIILGFLGKRSYVYNGISTVIMIVIIFSSDTYNLFGQKYLS VQLISFVIYLIWQVLLIMWYYKSRQKNNTFIKFLIIMILSILPLALVKILQSSWLGGHQI HFHEHKLIEFVGFLGISYVTFKSVQLIMEIRDGSIKEIKVGKLIQFISFFPTVSSGPIDR YKRFVKDDKKIPTGEQYRGMVVKAIHMIMMGFLYKYIIAHLINVYAIMPLLMHLHGFTHK WLYMYAYSFYLFFDFAGYSLFAIAVSYLYGINTPPNFKQPFKARNIKDFWNRWHMSLSFW FRDCVYMRTLFYMSRKKIMKNQFAMSNFAFFLNFFIMGVWHGLEVFYIVYGIYHGLMFIG YGYYERWRKKHPPRFQNGFATALSVIITFHFVAFGFLIFSGKLI >gi|312979641|gb|ACRM01000024.1| GENE 153 159626 - 161080 1538 484 aa, chain - ## HITS:1 COG:SA0793 KEGG:ns NR:ns ## COG: SA0793 COG1020 # Protein_GI_number: 15926521 # Func_class: Q Secondary metabolites biosynthesis, transport and catabolism # Function: Non-ribosomal peptide synthetase modules and related proteins # Organism: Staphylococcus aureus N315 # 1 484 1 485 485 728 71.0 0 MTDIINLINDIGQRNPDRVAIRHKSDELTYRQLIEESSKLAHYLQDTNKPLIIYGHMSPY MVVGMIGAIKAGCGYVPIDTSVPIERVEMIMNKVDPTFILNTTDSSVNQPRKELTIEDIK HSDYPIVFDSQMDKTDVVYTIFTSGSTGEPKGVQIEYASLIEFAEWMVSLNETDNHQEWL NQAPFSFDLSVMAIYPCLTSGGTLNLVDKDMIKKPKLLNEMLVQTPINAWVSTPSFIEMC LLLPNLNEKDYPSLNHFFFCGEILPHRTAKALVDRYPNAIVYNTYGPTEATVAVTGVKIT PEILERYNPLPVGVARPNTTLSTTDEGELVIKGTSVSLGYLKNKEKTEAVFKFDNGVRIY HTGDKAIEKDGYWFIQGRIDFQIKLNGYRMELEEIETQLRHSKYVRETVVVPIYKNGKVV YLVGAIVPTKKVDNDLEMTRNIKNELKSRLPEYMIPRKFVWMEQLPLTSNGKLDRKQVAE DIDA >gi|312979641|gb|ACRM01000024.1| GENE 154 161095 - 161265 98 56 aa, chain - ## HITS:1 COG:no KEGG:SAOUHSC_00868 NR:ns ## KEGG: SAOUHSC_00868 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 2 56 13 67 67 68 67.0 7e-11 MFVRCNIQLRETKKISVFYEKAKPYLLTILYLAIFIALYLIYGSGDTHNNFIYNEF >gi|312979641|gb|ACRM01000024.1| GENE 155 161601 - 162389 1099 262 aa, chain - ## HITS:1 COG:SA0790 KEGG:ns NR:ns ## COG: SA0790 COG0647 # Protein_GI_number: 15926518 # Func_class: G Carbohydrate transport and metabolism # Function: Predicted sugar phosphatases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 258 1 258 259 373 81.0 1e-103 MKNYKGYLIDLDGTMYMGTAEIDGAAQFIDYLNKNDIPHLYVTNNSTKTPEEVTEKLKEM KIDAKPDEVVTSALATANYIAEENSQASVYMLGGNGLRTALTDAGLTVKEDENVDYVVIG LDEAVTYEKLAIATLAVRKGAKFISTNPDVSIPKERGFLPGNGAITSVVSVSTGQQPQFI GKPETIIMQIALDILKLDKSEVAMVGDLYDTDIMSGINVGMDTVHVQTGVTSYEEIQTKQ PKPTYSFKDLNVAIAELESNTN >gi|312979641|gb|ACRM01000024.1| GENE 156 162389 - 162823 541 144 aa, chain - ## HITS:1 COG:SA0789 KEGG:ns NR:ns ## COG: SA0789 COG2445 # Protein_GI_number: 15926517 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 142 1 142 144 192 71.0 1e-49 MYFVDKDKLALKIKYLNQLIKDYETNKSNHYAFERIAQMLIESSVDIGNMIIDAFILRDP GNYKDVIDILELEGVISKDTQNHINDTVEIRKQFAHHYTELEVETLVPLFDTSIPYYRQF VKEVTQFLKKENVPITAFGKGDYS >gi|312979641|gb|ACRM01000024.1| GENE 157 162926 - 163192 427 88 aa, chain + ## HITS:1 COG:no KEGG:SH2026 NR:ns ## KEGG: SH2026 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 88 1 88 88 138 93.0 6e-32 MIDMFLYDDEEQSQAQFVGFVGEHSRYDLMLIQTDRHYGKTLVLNLQTNKFGIIGTDDIE EEGYIAHILGVSQEESEEIIEYLNQVIQ >gi|312979641|gb|ACRM01000024.1| GENE 158 163246 - 163632 441 128 aa, chain - ## HITS:1 COG:SA0786 KEGG:ns NR:ns ## COG: SA0786 COG4470 # Protein_GI_number: 15926514 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 120 1 126 127 158 69.0 3e-39 MIRVNQQYFELIEDYRECFDEELFASRYSDILDKYDFVVGDFGYDQLRLKGFYKDSNKKA EISKRFSTIQDYILEYCNFGCPYFIVRHINENERLELTSVDEVEDKLHDVKIKPTIQTTQ STEKKNNK >gi|312979641|gb|ACRM01000024.1| GENE 159 163836 - 164756 1127 306 aa, chain - ## HITS:1 COG:SA0785 KEGG:ns NR:ns ## COG: SA0785 COG0320 # Protein_GI_number: 15926513 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate synthase # Organism: Staphylococcus aureus N315 # 1 303 1 303 305 572 95.0 1e-163 MATKNEEILRKPDWLKIKLNTNENYIGLKKMMREKNLHTVCEEAKCPNIHECWGARRTAT FMILGAVCTRACRFCAVKTGLPNELDLNEPERVAESVELMNLKHVVITAVARDDLRDAGS NVYAETVRKVRERNPYTTIEILPSDMGGDYEALETLMASRPDILNHNIETVRRLTPRVRA RATYDRTLEFLRRSKELQPDIPTKSSLMVGLGETLEEIYETMDDLRANDVDILTIGQYLQ PSRKHLKVEKYYTPLEFGKLRKIAMEKGFKHCEAGPMVRSSYHADEQVNEAAKEKHRLGE EQLQQK >gi|312979641|gb|ACRM01000024.1| GENE 160 164868 - 166199 1553 443 aa, chain - ## HITS:1 COG:SA0784 KEGG:ns NR:ns ## COG: SA0784 COG0737 # Protein_GI_number: 15926512 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 1 438 1 438 439 636 69.0 0 MKLTIFHTNDIHSHLNEYARIMTYMAEHRPELQHPSLYLDIGDHVDLSTPVTEATMGKKN VELLNEAHCDIATIGNNEGMTISHEALNNLYNDAQFKVICANVLDEDGHLPRHIATSYIK EIEDVRFLFVAATAPFTPFYRALDWIVTDPLEAIKDEIEQRKGQYDVLIVMSHVGVFFDE KLCQEIPEIDVILGSHTHHHFNHGEVNNGVLMAAAGKYGYYLGEVNLTIENKTVITKEAT LHPVDTLPVVKTHFDEEGKDLMNKAIINKPVSLSSRTNVITKTTYLLAESVYEFTNADCT IINAGLIVNSIEGDQLTEYDIHTMLPHPINLVRVRLKGSELKKVILKSQKQEYMYEHVQG LGFRGDIFGGYILYKCGFIQSEHRFFVDGQEIEDNRTYILGTVDMYTFGRYFPLLKGTSI DYLMPEFLRDIFKEKLIQMHHSS >gi|312979641|gb|ACRM01000024.1| GENE 161 166219 - 167046 883 275 aa, chain - ## HITS:1 COG:SA0783 KEGG:ns NR:ns ## COG: SA0783 COG0730 # Protein_GI_number: 15926511 # Func_class: R General function prediction only # Function: Predicted permeases # Organism: Staphylococcus aureus N315 # 1 275 1 275 275 334 82.0 1e-91 MFLTMILLVLIGLLSAVLGSLVGIGGGIIIVPTLVYLGVNHHLLHGITTQIAIGTSSVIL IVTGLSSSVGYLKTKQVDIKNGSIFLFGLLPGSLIGSFLSRYLTLNSFNLYFGIFMICVS ILLMIRHKIKPFKIFDKEKYRKTYIDAKGMTYHYSVPPMFAFFATLFIGVLTGLFGIGGG ALMTPLMLIVFRFPPHVAVGTSMMMIFFSSVMSSIGHIIQGHVAWSYSIILIISSYIGAQ IGVKINHSIKSETVVLLLRTVMLIMGVYLIIKSFL >gi|312979641|gb|ACRM01000024.1| GENE 162 167060 - 167908 988 282 aa, chain - ## HITS:1 COG:SA0782 KEGG:ns NR:ns ## COG: SA0782 COG1801 # Protein_GI_number: 15926510 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 282 1 282 282 479 83.0 1e-135 MINIGLTGWGDHYSLYEDLERQTDKLRTYASHFPVVELDASYYAIQPERNILKWINETPD KFQFIVKIHQALTLHSDYKTYADSRSELFKQFRHMLEPLIAHHKLAMVLVQFPPWFDCTA QNINYILYVRQQLEDIPMCVEFRHQSWFNSQFKEQTLMFLTEHQIIHAVVDEPQIKDGSI PLVNRITSSTAFVRYHGRNQHGWTKKDMTDQEWRDVRYLYNYNENELKDLANKVQILEQK AKKVYVIFNNNSGGHAAQNAKTYQDILDIEYTGLAPQQLKFF >gi|312979641|gb|ACRM01000024.1| GENE 163 168077 - 168211 79 44 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MINYEGDIPSYPVQNQLIQSIRRQVVTNGDSEFTHNWSGSPVSY >gi|312979641|gb|ACRM01000024.1| GENE 164 168475 - 169872 1706 465 aa, chain - ## HITS:1 COG:SA0778 KEGG:ns NR:ns ## COG: SA0778 COG0719 # Protein_GI_number: 15926506 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Staphylococcus aureus N315 # 1 465 1 465 465 900 96.0 0 MAKKAPDVGDYKYGFHDEDVSIFRSERGLTENIVREISKMKEEPEWMLNFRLKALKLFYK IPMPQWGGDLSELNFDDITYYVKPSEHTERSWDEVPEEIKRTFDKLGIPEAEQKYLAGVS AQYESEVVYHNMEKELEEKGIIFKDTDSALRENEDLFKEYFASVVPAADNKFAALNSAVW SGGSFIYVPKNVKLDTPLQAYFRINSENMGQFERTLIIADEGASVNYVEGCTAPVYTTSS LHSAVVEIIVHKDAHVRYTTIQNWANNVYNLVTKRTFVHENGNMEWVDGNLGSKLTMKYP NCVLLGEGAKGSTLSIAFAGKGQVQDAGAKMIHKAPNTSSTIVSKSISKNGGKVIYRGIV HFGRKAKGARSNIECDTLILDNESTSDTIPYNEVFNDNISLEHEAKVSKVSEEQLFYLMS RGISEEEATEMIVMGFIEPFTKELPMEYAVEMNRLIKFEMEGSIG >gi|312979641|gb|ACRM01000024.1| GENE 165 170034 - 170495 687 153 aa, chain - ## HITS:1 COG:SA0777 KEGG:ns NR:ns ## COG: SA0777 COG0822 # Protein_GI_number: 15926505 # Func_class: C Energy production and conversion # Function: NifU homolog involved in Fe-S cluster formation # Organism: Staphylococcus aureus N315 # 1 153 1 153 154 277 94.0 6e-75 MSFNNLDQLYRSVIMDHYKNPRNKGVLDNGSMTVDMNNPTCGDRIRLTFDIEDGIIQEAK FEGEGCSISMSSASMMTEAVKGHSLGEAMQMSQEFTKMMLGEDYNITEDMGDVEALQGVS QFPARIKCATLAWKALEKGTVQKEGKAEGTTEE >gi|312979641|gb|ACRM01000024.1| GENE 166 170485 - 171726 1477 413 aa, chain - ## HITS:1 COG:SA0776 KEGG:ns NR:ns ## COG: SA0776 COG0520 # Protein_GI_number: 15926504 # Func_class: E Amino acid transport and metabolism # Function: Selenocysteine lyase # Organism: Staphylococcus aureus N315 # 1 413 1 413 413 744 86.0 0 MAETSLNIQEIIEDFPILNQKVNGKRLAYLDSTATSQTPVQVLNVLDDYYKRYNSNVHRG VHTLGSLATDGYESARETVRRFINAKYFEEIIFTRGTTASINIVAHSYGDANINEGDEIV VTEMEHHANIVPWQQLAKRKKATLKFIPMTDDGELRIEDVKSTINDNTKIVAITHVSNVL GTINDIKAIAKIAHEHGAIISVDGAQSAPHMDIDVQDLDVDFFSFSGHKMLGPTGIGVLY GKRELLQNMEPVEYGGDMIDFVSKYDATWADLPTKFEAGTPIIAQAIGLAEAIRYIENIG FDAIHQHEKELTEYAYEQLSSIEGLEIYGPPKERRAGVITFNLADIHPHDVATAVDTEGV AVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLVEALKQTKEFFSYEF >gi|312979641|gb|ACRM01000024.1| GENE 167 171766 - 173073 1876 435 aa, chain - ## HITS:1 COG:SA0775 KEGG:ns NR:ns ## COG: SA0775 COG0719 # Protein_GI_number: 15926503 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in Fe-S cluster assembly, permease component # Organism: Staphylococcus aureus N315 # 1 435 1 435 435 716 84.0 0 MTTETLNISEAQLVDYSKAQNEPSWMTELRQKALKLTETLEMPKPDKTKLRKWDFDAFKQ HHVESKSYNDVSELPESVKNIIDIENSKNLIIQHNNDLAFTQVSEQANHNNVIIEGLSKA LQDHSELVEKYLMKDAVTVDEHRLTALHTALLNGGVFVYVPKNVVVEDPIQYVVLHDNEN ASLFNHAIIVTEESAEVTYVENYLSTASGEGNQVNIISEVIAGANSNITYGSVDYLDKGF TGHIIRRGVTAADALINWALGLMNEGSQIIDNTTNLIGDRSTSELKSVIVGTGDQKINLT SKIVQYGKETNGYILKHGVMRENASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDA NPILLIDEDDVEAGHAASVGRVDPEQLYYLMSRGISQKEAERLVIHGFLDPVVRELPIED VKRQLREVIELKVNK >gi|312979641|gb|ACRM01000024.1| GENE 168 173196 - 173957 181 253 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 5 232 2 224 245 74 25 5e-12 MSSTLEIKDLHVSIEDKEILKGVNLTINTGEVHAIMGPNGTGKSTLSSAIMGHPSYEVTQ GEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQ FIKKLDKQMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDID ALKVVSKGINEMRGEDFGALMITHYQRLLNYITPDKVHVMYGGKVVKSGGPELAKRLEEE GYEWVKEEFGATE >gi|312979641|gb|ACRM01000024.1| GENE 169 174281 - 175138 926 285 aa, chain + ## HITS:1 COG:SA0773 KEGG:ns NR:ns ## COG: SA0773 COG2035 # Protein_GI_number: 15926501 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 3 282 4 283 283 311 67.0 6e-85 MTFKWKNILKGFAMGTSDLVPGISGGTIALLLGIYDGFISSISGLFSKRFWPSLKFLLPI LIGMILAIGVLSNLIHYLLDHHHVITMFFFTGLIIGIVPYLLKTSDFKKTFTTKHYGLLI LGIIVIVTLTLLNPSTQQSSLTLQLSFSLIIKYFIAGVCASSAMLLPGISGSFMLLVFGA YGTIMLAIANLAKFNFTGLPILIVVGLGILCGFLFSSRIIKYFLTHHFIGTFALITGFVI GSIYAVFPGIPKSPVEWIVSIISLVIGYIVSYSLGLITSNNDTQT >gi|312979641|gb|ACRM01000024.1| GENE 170 175202 - 175387 422 61 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474312|ref|ZP_04059047.1| ## NR: gi|228474312|ref|ZP_04059047.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 61 1 61 61 66 100.0 4e-10 MAEDKFEQAKGNIKETVGNATDNKDLEKEGQGDKASGKAKEVVDNVKDKANDVIDKLKGD K >gi|312979641|gb|ACRM01000024.1| GENE 171 175562 - 175726 320 54 aa, chain + ## HITS:1 COG:no KEGG:SH2044 NR:ns ## KEGG: SH2044 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 54 1 54 54 75 68.0 4e-13 MTFVNFTAMTEKGLNKKVNAFLEEHPYIEIVKFEYAMGQGGIGVGILYQDDSSL >gi|312979641|gb|ACRM01000024.1| GENE 172 175816 - 176631 1096 271 aa, chain - ## HITS:1 COG:SA0771 KEGG:ns NR:ns ## COG: SA0771 COG1464 # Protein_GI_number: 15926499 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, periplasmic component/surface antigen # Organism: Staphylococcus aureus N315 # 1 271 1 273 273 394 81.0 1e-110 MKKLLSLVLILTLTVVLVACGKGGDEKDKKIVVGASPAPHAEILEKAKPLLEKKGYDLEI KTINDYTTPNKLLDKGELDANYFQHVPYLKTESKEKGYKIEDAGKVHLEPMAVYSKKYKS LKDLPKGATVYVSNNPAEQGRFLKFFVDEGLIKIKKGVKIEDAKFEDITENKKDIKFNNK QSAEYLPKIYQNQDVDAAIINSNYAIDQGLSPQKDSIVVEKPNNNPYANLIAVRKDHKDD EKIKALVEVLQSKDIRDFINEKYKGAVVPAK >gi|312979641|gb|ACRM01000024.1| GENE 173 176652 - 177347 981 231 aa, chain - ## HITS:1 COG:SA0770 KEGG:ns NR:ns ## COG: SA0770 COG2011 # Protein_GI_number: 15926498 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, permease component # Organism: Staphylococcus aureus N315 # 1 231 1 231 231 294 89.0 1e-79 MDKSYGDIFHEMITMPNVQWPEVWQAIYETLYMTIVSTIFAFIFGLILGVLLFLSAKSDA PGAKIFYTVVSFIVNLFRAIPFIILILLLIPFTSVLLGTISGPTGALPALIIGAAPFYAR LVEIAFKEIDKGVIEAAWSMGANTWTVVRKVLLPEAMPALVSGITVTAIALVGSTAIAGV IGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKIDKR >gi|312979641|gb|ACRM01000024.1| GENE 174 177340 - 178365 1324 341 aa, chain - ## HITS:1 COG:SA0769 KEGG:ns NR:ns ## COG: SA0769 COG1135 # Protein_GI_number: 15926497 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type metal ion transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 341 1 341 341 506 74.0 1e-143 MIELNQVVKRYHTKNKDVLAVDHVDLNIESGSIFGVIGFSGAGKSTLIRMFNNLEEPTSG DIIIDGDNINKLSKSDLRKKRQKVSMIFQHFNLLWSRTVISNIMFPLEIAGVARTEAKKR ALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPNVLLCDEATSALDPQTTDEIL DLLLKIKEERNLTIVIITHEMQVIRRICDAVAVMENGRVIEQGNVDEVFENPQHEVTKRF VKDDLDDDFEDSIKHLEPLNKDAYIVRLNFNGNNTTQPVVSDITRTQNIELNILEANIKN TRTGSIGFLIVHIPHISEDGFNTFVTELHKQHVNVEVIKHG >gi|312979641|gb|ACRM01000024.1| GENE 175 178609 - 178908 344 99 aa, chain - ## HITS:1 COG:SAS023 KEGG:ns NR:ns ## COG: SAS023 COG0526 # Protein_GI_number: 15926496 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 98 1 98 98 127 67.0 4e-30 MNNSIKIEDIKEHFDKDKHLIFGYTPMCGTCKISERMLDIANDIEQLPLKKIDLNFHKYF SEEYKIMSVPVLLIMDKDKEVDRIYAFQSVPYLLEKLKK >gi|312979641|gb|ACRM01000024.1| GENE 176 178901 - 179287 387 128 aa, chain - ## HITS:1 COG:SA0768 KEGG:ns NR:ns ## COG: SA0768 COG1658 # Protein_GI_number: 15926495 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Staphylococcus aureus N315 # 1 128 1 128 128 214 82.0 3e-56 MAILNKVIIVEGKSDKKKVQQVIAEPVNIICTHGTMSIDKLDDMIETLYGKQVYILADSD DEGEKIRKWFKRYLSESEHIYVDKTYCEVARCPKNYLAHVLSKYGFNVKKEKKLIPNLSS ERLVLVNE >gi|312979641|gb|ACRM01000024.1| GENE 177 179423 - 179803 649 126 aa, chain - ## HITS:1 COG:SA0760 KEGG:ns NR:ns ## COG: SA0760 COG0509 # Protein_GI_number: 15926486 # Func_class: E Amino acid transport and metabolism # Function: Glycine cleavage system H protein (lipoate-binding) # Organism: Staphylococcus aureus N315 # 1 126 1 126 126 177 87.0 3e-45 MAVPSEFKYSKEHEWVKVEGNTATIGITEYAQGELGDIVFVELPDVDDEINEGDTFGSVE SVKTVSELYAPVSGKIVETNDELEDSPEFVNESPYEKAWMVKVELNDESQLDELLSAEQY SEMIGE >gi|312979641|gb|ACRM01000024.1| GENE 178 179896 - 180249 487 117 aa, chain - ## HITS:1 COG:SA0759 KEGG:ns NR:ns ## COG: SA0759 COG1393 # Protein_GI_number: 15926485 # Func_class: P Inorganic ion transport and metabolism # Function: Arsenate reductase and related proteins, glutaredoxin family # Organism: Staphylococcus aureus N315 # 1 117 1 117 118 177 75.0 3e-45 MIKFYQYPKCTTCKKAARFLDEHGVSYESIDIVQHTPTKQEFKELVVKSEVEINKFFNTH GVKYRELGLKDKLKELSNDEKLELLASDGMLVKRPLAVSGEKVTLGFNEEQYKDVWL >gi|312979641|gb|ACRM01000024.1| GENE 179 180389 - 180712 492 107 aa, chain + ## HITS:1 COG:SA0758 KEGG:ns NR:ns ## COG: SA0758 COG0526 # Protein_GI_number: 15926484 # Func_class: O Posttranslational modification, protein turnover, chaperones; C Energy production and conversion # Function: Thiol-disulfide isomerase and thioredoxins # Organism: Staphylococcus aureus N315 # 1 105 1 105 106 168 76.0 3e-42 MKNITTTEEFNSVIQSEQPVIVKFEAGWCPDCKAMDMWIDPIVDKYNDYKWYSVNRDELE DVASDNEVMGIPSLLIFENGQKQAHLHSANAKSPEQVESFLKETFNK >gi|312979641|gb|ACRM01000024.1| GENE 180 180750 - 181289 636 179 aa, chain - ## HITS:1 COG:SA0757 KEGG:ns NR:ns ## COG: SA0757 COG0778 # Protein_GI_number: 15926483 # Func_class: C Energy production and conversion # Function: Nitroreductase # Organism: Staphylococcus aureus N315 # 1 179 1 179 179 275 72.0 4e-74 MELQEVISLRRSIKKFKHDMVINDEDVFKAIEQATDAPNHGMREPWRVIHVSKDRLGDMS RDITRFAFPNSPEKQEDHYNAVTNLGGMLVLVLKTDPRQRQNRENFFAMGAYTQNLMLLL YEKGIGTCWKTPLYIFEPKVRKAFGIAKDEAIAGLLYLTDLEEVPPKAKRKNKHLISEY >gi|312979641|gb|ACRM01000024.1| GENE 181 181359 - 182084 493 241 aa, chain - ## HITS:1 COG:SA0756 KEGG:ns NR:ns ## COG: SA0756 COG0710 # Protein_GI_number: 15926482 # Func_class: E Amino acid transport and metabolism # Function: 3-dehydroquinate dehydratase # Organism: Staphylococcus aureus N315 # 1 238 1 238 238 245 51.0 6e-65 MAEVKVAATIAPQDIIDNETLNSINDNHAYIDIIELRIDQWESHHHELLMKNLSLLNEIK DHFKILVTYRTISQGGKGQLTNKEYLQLIETISSIDECQMIDIEWESNIEVETHKRIIEN AHRHQKQIIVSYHNFLETPPLEELKFTYYKMQKLNPEYVKIAVMPKEKQDVAMLLEAVAY TSEAISQQVIGISMSHLGLVSRTAQGVFGGTVSYGCLGEPQAPGQIHVKELKKQLLFYES M >gi|312979641|gb|ACRM01000024.1| GENE 182 182246 - 182668 633 140 aa, chain + ## HITS:1 COG:SA0755 KEGG:ns NR:ns ## COG: SA0755 COG1764 # Protein_GI_number: 15926481 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted redox protein, regulator of disulfide bond formation # Organism: Staphylococcus aureus N315 # 1 140 1 140 140 227 82.0 5e-60 MAVQYETKATNVGGRKGHVHTDDNAINVDVLPPQQADGNATNPEQLFAAGYASCFNGAYD LILKQNKVRGAEPEVTLTVRLEDDSNAESPKLSVSIDAKVKNVLSQEDAEKYLQDAHEFC PYSKATRGNIDVDLNVQVVD >gi|312979641|gb|ACRM01000024.1| GENE 183 183120 - 183611 524 163 aa, chain + ## HITS:1 COG:SA0754 KEGG:ns NR:ns ## COG: SA0754 COG0454 # Protein_GI_number: 15926479 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 162 1 161 164 127 41.0 9e-30 MSEVRILTNNDLNQYITLISNDSHTYSWDKLYFQHVSPNYLKHILSKEEEYCNIFGNFKN EKLVAGVTLRQLKQVGTQHKAMLENLFLKDKKDEITLQNLICEVINYAKSRHIEKLMTCI TSNHIGAKIFFTALGFETLGIEKNSFKVDDTYFDVHWLLYDIK >gi|312979641|gb|ACRM01000024.1| GENE 184 183626 - 184225 690 199 aa, chain - ## HITS:1 COG:SAS020 KEGG:ns NR:ns ## COG: SAS020 COG0406 # Protein_GI_number: 15926477 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-2,6-bisphosphatase # Organism: Staphylococcus aureus N315 # 1 194 1 193 193 209 53.0 2e-54 MSKILYLMRHGQTMFNLRGKVQGASDSPLTELGISQAKQAGHYFKHNHITFDEAYSSSSE RACDTLENVLPEQAYQRNKGLKEWSFGLFEGDSVQLLDAVWDKHDIFGTRLRSFGGETKH EVEHRIVTTLSNLLESSNGKTFLAVSHGTAIQVFLRKWIGDDMANQYIIGNCCILKFIYT HGKFEFLDMVDPTIDDANK >gi|312979641|gb|ACRM01000024.1| GENE 185 184420 - 184662 232 80 aa, chain + ## HITS:1 COG:no KEGG:SH2060 NR:ns ## KEGG: SH2060 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 80 1 80 80 119 78.0 3e-26 MNDHHQYNYVNPNKLSLDWECFVISKSEMLLDGVPSELIHSWLDREIIEPFSIRDNELNF KTKDIWNALKQQNWYYPNSN >gi|312979641|gb|ACRM01000024.1| GENE 186 184654 - 184857 299 67 aa, chain - ## HITS:1 COG:no KEGG:SLGD_02025 NR:ns ## KEGG: SLGD_02025 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 67 1 67 67 90 71.0 1e-17 MTFYDFVIGFINDDTPLGSLANYIVNDHKFPKNERNNKEIRAYVMSNYVDHQLIESANRA MSLYKLI >gi|312979641|gb|ACRM01000024.1| GENE 187 185312 - 185569 209 85 aa, chain + ## HITS:1 COG:no KEGG:SH2061 NR:ns ## KEGG: SH2061 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 85 1 85 85 72 67.0 3e-12 MNINKLFWINIMITLLFLGFNIIVTYFPKLDDYFWLIPGLIICGLTISFSLIAAILDKNL ISEIIFLTNLIIFLYYIYPLIYNFF >gi|312979641|gb|ACRM01000024.1| GENE 188 185592 - 185780 322 62 aa, chain + ## HITS:1 COG:no KEGG:SH2062 NR:ns ## KEGG: SH2062 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 62 1 62 62 63 91.0 2e-09 MSTHLTILLWLGIIFVVAASIILGLLLKSKKEERKESYLGFTVIFYIFGFALLIYILLFG IL >gi|312979641|gb|ACRM01000024.1| GENE 189 185862 - 186443 607 193 aa, chain + ## HITS:1 COG:no KEGG:SH2063 NR:ns ## KEGG: SH2063 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 8 193 10 193 193 282 74.0 5e-75 MKIIQLKRIIFVIFILLLFFAFSSHTYASISSTSSSSEKGNDFKLQPGDIILTKGPVLFG FFGHSSIALDHDTVLQIEGPGDKPIIESFESFKQRFGVKKNDWIKIYRCEYPNAGQKAAN WAKAHYKNSDKTYLVTLNLKSERFTYCTKIIYQAYKYGVSKDTINDHGLLIISPYALVDN FNNDYRLKLVKKY >gi|312979641|gb|ACRM01000024.1| GENE 190 186517 - 187263 582 248 aa, chain + ## HITS:1 COG:BS_ymaC KEGG:ns NR:ns ## COG: BS_ymaC COG4195 # Protein_GI_number: 16078790 # Func_class: R General function prediction only # Function: Phage-related replication protein # Organism: Bacillus subtilis # 15 246 5 232 235 122 34.0 7e-28 MKNKKLHYRFFYYMFLTLIIILFILLFLYFYKHFELKQHQSLDYYANFNDLKQHTTKNKD WKIITKHRKHSDTLITAIHGGSIEPGTTELARRISNIGQYNFYSFEGLRSDNNAQLHITS TVFDEPQLLDMLNHSSKTISIHGYAGDEPIVYVGGKDKKLVQTLRHSLTHHGFTVQKTPK GIEALSYNNIINRDKKDTGVQLELTTRQRALFFKHNKLDKNNRRYSKNYTRTFYKFAEAV DQGIKKAQ >gi|312979641|gb|ACRM01000024.1| GENE 191 187340 - 187624 385 94 aa, chain + ## HITS:1 COG:no KEGG:SH2069 NR:ns ## KEGG: SH2069 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 93 2 94 95 130 79.0 1e-29 MDELTKEQKYTVAKFYKLYMERSNSGQTEEEANNFKDSITAQDDYFCDRKYSDFLENCKV LIDHGYLDGNIMSDRIDNIKVTNKAFTEIEQSFN >gi|312979641|gb|ACRM01000024.1| GENE 192 187780 - 188007 219 75 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474240|ref|ZP_04058975.1| ## NR: gi|228474240|ref|ZP_04058975.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 74 1 74 74 93 100.0 4e-18 MNHWKINNMTNRNLLIQQNENDVSIVEPLNNSSFKILSEFKLNTPSLPINTYDEHLYVSI NFKNEEINIYNKSNE >gi|312979641|gb|ACRM01000024.1| GENE 193 188140 - 188856 814 238 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474365|ref|ZP_04059100.1| ## NR: gi|228474365|ref|ZP_04059100.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 218 1 218 238 182 100.0 2e-44 MDKIIFYLGITLFLIACIVIIFGIIAIFKNKNYLKMLAMAIIIILLSMLALGIHKVIESN NPSKSDITPIKKEKPKDNKTNKENNNKKENNSKKNNKDTSHESIQDTPSTQENTPATEEN SIQSSESPTTQQSIQQENPTTEQNNATTNNQNSTQRQQEPSTQQQDTSQYQTNSANNDSK QTHSTHNQNSQNSTQYNHTNESNTTKDNTNNVNQNSTLNTTQNTQSNNTNNNINQINN >gi|312979641|gb|ACRM01000024.1| GENE 194 188992 - 189168 228 58 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474253|ref|ZP_04058988.1| ## NR: gi|228474253|ref|ZP_04058988.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 58 1 58 58 72 98.0 6e-12 MKKLALLTLSSFLILGACSHSNDTVKDVNESAHKKNNPKAHKSKGNSERIDSKKINKN >gi|312979641|gb|ACRM01000024.1| GENE 195 189223 - 190164 1035 313 aa, chain - ## HITS:1 COG:SA0163 KEGG:ns NR:ns ## COG: SA0163 COG1230 # Protein_GI_number: 15925872 # Func_class: P Inorganic ion transport and metabolism # Function: Co/Zn/Cd efflux system component # Organism: Staphylococcus aureus N315 # 3 310 10 317 319 389 70.0 1e-108 MNNQSKYFHHVEHRKFQSSSKATLWSSLIITLIFTIVEFVGGLYANSLALLSDSFHMLSD VLALGLSMLAIYFASKPPTKHYTYGFLRLEIIVAFLNGLALIVISLGIMYEGILRIIHPE PVASGIMIFVAVLGLIINIILTLILYRSLRKEDNVNIQSALWHFFGDLLNSIGVIVAVVL IHFTGWAIIDPIISIIISLIILNGGYKIIKNAWKVLMERIPDGYDSDEIINAMKSVEGVI DVHEFHLWSITTNHSSLSAHVVLSDEYTKWPYSTVNKVSELLKEKYNLEHVTLQIENIHL NHLDEDYFKQYEE >gi|312979641|gb|ACRM01000024.1| GENE 196 190576 - 191136 644 186 aa, chain + ## HITS:1 COG:FN0535 KEGG:ns NR:ns ## COG: FN0535 COG1611 # Protein_GI_number: 19703870 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Fusobacterium nucleatum # 2 186 5 189 192 216 54.0 2e-56 MNIIVYCGASKGNQKEYENSAIQLGEWIAKNNHSLVFGGGNAGLMGILANTVIHNNGKTI GVMPTFLQERELAHDKLDELIIVESMSERKETILEKGDVCIALPGGPGTLEEITEVVSWT RVGQNDNPCIFFNTNNYYSLIEQFYDQMVSNQFLTQEDRDKILFSKSFEEIERFIKNYKV PKVRTY >gi|312979641|gb|ACRM01000024.1| GENE 197 191311 - 191628 405 105 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|167465906|ref|ZP_02330995.1| ## NR: gi|167465906|ref|ZP_02330995.1| hypothetical protein Plarl_25618 [Paenibacillus larvae subsp. larvae BRL-230010] # 5 100 21 116 121 64 40.0 2e-09 MAYHFNNRISIIGITEEMNDEGGFEEVEAEIAKPWADIKTMRAGEFEAMGFSVTNVPIRF IIRYRKGIELDHKIKYNGDMYKIESIENDDGKNYTLTIFANRNEM >gi|312979641|gb|ACRM01000024.1| GENE 198 192249 - 192770 527 173 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|258423473|ref|ZP_05686364.1| ## NR: gi|258423473|ref|ZP_05686364.1| predicted protein [Staphylococcus aureus A9635] # 1 173 1 173 173 285 83.0 7e-76 MGVGNSNLEIKPTLSNLQFYIGQTGKPEHDPLLDFSLLYEHAELGIKFTLSGLDKIDNPY NTDNELYLIILLYDKVGGIGFDLRNFWTLNLNAETMKKPYETIQFTLYKFEPNNRSYDFT NIYQQLKVLVLPEEIGKEEIDKDTFMNWMTWPQQNEILSTKIPIYHHKEINNE >gi|312979641|gb|ACRM01000024.1| GENE 199 192763 - 193266 585 167 aa, chain + ## HITS:1 COG:no KEGG:SAAV_2066 NR:ns ## KEGG: SAAV_2066 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_ED98 # Pathway: not_defined # 51 167 1 117 117 141 78.0 1e-32 MSNLEPVPHKTLLNRIYPNGDIPVNFMNDTKNQKDDIMELNKNDESGGGDMNNYVTRDEF NNGIKEFKDEMRAMRTDMNNNMNSIRTDMSNNMNSLRTEMNTNSNYLRSEMQNSISKLPT NSEVENILLKNNKELDKEAKQNRNTIIGWTIGIVGLGFTIAKSLGWL >gi|312979641|gb|ACRM01000024.1| GENE 200 193449 - 193937 485 162 aa, chain + ## HITS:1 COG:no KEGG:Exig_2700 NR:ns ## KEGG: Exig_2700 # Name: not_defined # Def: cell division protein ZipA # Organism: E.sibiricum # Pathway: not_defined # 1 162 1 162 164 201 58.0 7e-51 MNNLGTLYFFSGKMGAGKSTRSKEIAQTENAVLLSEDEWLEKLYPNQINDFDDYLSYSKL IKPLLKEHIQRILKVGSNVVLDFPGNTKTQRKWLLSVASEINANHQLIFLNISDDKCLKQ INIRRSEEPEREQFDTKETFEYVSSFFEPPEFSEGLNIIEIK >gi|312979641|gb|ACRM01000024.1| GENE 201 193966 - 194376 331 136 aa, chain - ## HITS:1 COG:no KEGG:SSP1609 NR:ns ## KEGG: SSP1609 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 136 1 136 136 221 88.0 9e-57 MKPINPDVPDEYKCTSDYREIPREYLNSRIPEGRGIVKWQAFKTMPEQYEQLEQYIQDQN KIDKPILDDDQLNELNNTLIFKMYNDPSIELRYFENGYIKNKVGYIHKVDVHTKTLHMYE DTGMSVLNLKDIVEIK >gi|312979641|gb|ACRM01000024.1| GENE 202 194386 - 194577 227 63 aa, chain - ## HITS:1 COG:no KEGG:SSP1610 NR:ns ## KEGG: SSP1610 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 63 1 63 63 108 93.0 6e-23 MIPNLDWNKNFQEFQEILNSGINPEWLYNAKANMILNPAYTGEGKQFFFTKDIIKASKTI PFF >gi|312979641|gb|ACRM01000024.1| GENE 203 194656 - 194949 261 97 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGFIATIIVLVCSFYIFKNLFIILSNYVGEFVYSNNISRSEDGNQFIALVSTLVLTFLSL VLILVISYTIFKGFYLLPIIAISLYFKFGTDAGKQTD >gi|312979641|gb|ACRM01000024.1| GENE 204 195053 - 195388 335 111 aa, chain - ## HITS:1 COG:no KEGG:Sca_1522 NR:ns ## KEGG: Sca_1522 # Name: not_defined # Def: hypothetical protein # Organism: S.carnosus # Pathway: not_defined # 1 111 1 110 112 163 88.0 2e-39 MSYDKATVKEFILNYHKTINNNDAYNEDINIDDFFNVNDQAEVHDIDNKNVEESIFYNEL EAVIESVATEKEHNLFLLLCSGVSFEKAGSIFGVKEARAKQMLNRLLEKLK >gi|312979641|gb|ACRM01000024.1| GENE 205 195385 - 195711 370 108 aa, chain - ## HITS:1 COG:no KEGG:Sca_1523 NR:ns ## KEGG: Sca_1523 # Name: not_defined # Def: hypothetical protein # Organism: S.carnosus # Pathway: not_defined # 5 108 1 104 104 168 90.0 4e-41 MIGSLNDVDYPILERYMRNYHSMVDTYKNKPSDMNELQYMNLESIVKGVTKVYNDSDVKV QQIIKLTWWDDKKYTDEVIADVIGVGELTLRHAKEVILKRVAKAVDYV >gi|312979641|gb|ACRM01000024.1| GENE 206 195708 - 196244 351 178 aa, chain - ## HITS:1 COG:SA1822 KEGG:ns NR:ns ## COG: SA1822 COG5577 # Protein_GI_number: 15927590 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Staphylococcus aureus N315 # 1 155 1 156 175 129 46.0 2e-30 MILKHCKSVLWYYEEKKITEYELLTHYNPQFINSKIRAIQEQIDAMYHLNVSHTVCDDVM GVISISYPLEKLVLWIIDQKEELNRFKNSSTKKLNLLKKIVHNYTPKEQQEVMRYFKSNG SNKPFKTIDKLQEDLYKVHHHKRLERNKQQEKESEVIYQNFVVEVKQSLNNEHEELVV >gi|312979641|gb|ACRM01000024.1| GENE 207 196270 - 196743 473 157 aa, chain - ## HITS:1 COG:no KEGG:Sca_1525 NR:ns ## KEGG: Sca_1525 # Name: not_defined # Def: hypothetical protein # Organism: S.carnosus # Pathway: not_defined # 1 157 2 158 158 232 82.0 3e-60 MAQRKLLSQQKSRLTTEVQETKQATEEALQQLTKLSPEPPEWLDDTATKEWHRIFPLLQE MPVASLDLMLVSTYCQAYSDYINATKRMNNSDVVIVTERGTKLNENHRIKRDSLSQLNSI APKLGLTVESRLKILDPSKEKTNDKSVYEMFGIDDND >gi|312979641|gb|ACRM01000024.1| GENE 208 197894 - 198367 599 157 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSYTVLSPIKQDYALGFDEKKNTIILKPLYSNSQVGIATVDGVTSSDINYKKGSLTRRVF KNFKDTDGINIVINNNEHSFVANSKDSGVLTVIKEEFIGFGIQVDKVKDKGEGLKELLDI AKNKSSVSVQCYVSTLGMDNTTIGNIDKIELISINTK >gi|312979641|gb|ACRM01000024.1| GENE 209 198383 - 199000 765 205 aa, chain - ## HITS:1 COG:no KEGG:SSP1937 NR:ns ## KEGG: SSP1937 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 4 152 5 153 212 78 33.0 1e-13 MTKVNEKSIEVFNKVIEPKVENKKHVALEKSKVTDKLKEFDYKMSHYRNENDFAMIASLK KEQGKLENEIVALHEQSEDDNHKLLDKDIKDFNNAYDKEVKELRDINSKLIQDFNNKLQE VYDVYEKIAANKVEAIRRASRRNYMNTAINNPDQWRLSLQRNTSLVDDPFRTNTDPTTLA NSFKEKLFNINGRADSEYNNGNHKW >gi|312979641|gb|ACRM01000024.1| GENE 210 199014 - 199214 282 66 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MWYRDAANQIVARLPTNISNVSESYLDTVIRRYVTKREDIEEVKQCINEMKRSKQIKTYK DFITKK >gi|312979641|gb|ACRM01000024.1| GENE 211 199304 - 199723 388 139 aa, chain - ## HITS:1 COG:no KEGG:MGAS10270_Spy0554 NR:ns ## KEGG: MGAS10270_Spy0554 # Name: not_defined # Def: phage protein # Organism: S.pyogenes_MGAS10270 # Pathway: not_defined # 33 137 27 128 137 85 41.0 6e-16 MRYLYNSGNRYGTVVTKNNVNRVIMDYPREVFNFTDEELQQYMADNNLGFNAIDFNDMTM EQLETVLMWCKQLEPIKSFNENYSSYNLKHMFEREPYGFYISNGNMKEAMALAGFKPKNA DDLNWFYPISERSIKQLQK >gi|312979641|gb|ACRM01000024.1| GENE 212 199720 - 200004 202 94 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|66395181|ref|YP_239458.1| ## NR: gi|66395181|ref|YP_239458.1| ORF017 [Staphylococcus phage PT1028] # 1 90 1 90 90 109 61.0 5e-23 MQATNIGTNYDAQANKAGLIVGISEEMYFCSISKVSQVYVEYIDNNWVSWRESYVPNSNR RTSYKMIAHGGFELVMARTKNYLGYIKKNRGRRK >gi|312979641|gb|ACRM01000024.1| GENE 213 199991 - 200794 720 267 aa, chain - ## HITS:1 COG:no KEGG:SAK_0620 NR:ns ## KEGG: SAK_0620 # Name: not_defined # Def: hypothetical protein # Organism: S.agalactiae_A909 # Pathway: not_defined # 4 265 2 278 289 137 32.0 5e-31 MTGYHVAKYLLKKNIQVIPLNQYKKPSVTFADIEITNDFIEYHSKIYHQTHVLGVLTRGV WCIDIDVNHVEGKNGFESLKMIPFYDEIVTNAQNTLVQTTPSGGKHIIFKKRDDVEYGQK IDYLPSVDIKAHNNNYFVLANSQTHKGIYKHNDQDVTEYNGEFEKRIFSKRGNYTQQVFE PYSMKQVLSDHNFDHLGTSKGGLGKQAYQRIVNGESEYRNNDLYKAASYAKQCNIDIEPL RILIGDNKNGDIFDERSWEATVRSAGY >gi|312979641|gb|ACRM01000024.1| GENE 214 200953 - 202584 1329 543 aa, chain - ## HITS:1 COG:no KEGG:MGAS10270_Spy1941 NR:ns ## KEGG: MGAS10270_Spy1941 # Name: not_defined # Def: bacteriophage resistance protein # Organism: S.pyogenes_MGAS10270 # Pathway: not_defined # 87 529 76 512 537 135 27.0 6e-30 MDEVSLYKKHFEFHSNLDYINTQSLSKIKEISKRINFASISSDKQVFNNKGNLYHREKHD IGDYINNLTLDYIIIPKEIGVIYGIVNTKITENDNGEEEKKASFKADAFNNYARFIADLI SDKVIYSDELDAFLIVKSNTYEVIDDTNFALNYPVDNKHQINDFLDVMLEMYREHLNVEH GYNILPYTIAGNDWIYDCKNLEFRKKTLNSDELYAKKYEVNASEIDTDTPKRFYNLVTES DKSKNNLMLVHAYAMYRKMNLIQAEKWFLMKDFGRSGKGLFMTTFDELLQVNKVNFDSLI SGGFEASNEWMNFYGADIAHANETGEITKSMMRILRKIATGEVISGRGIGRNAFTFKNKS LLVLDTNESVDTGEITANTTRTIKISLKDRPLNETDEERYQIFKPYWDFVQPNGKKSVAA AVSFLIASLEYLKEIGQEFNFNDVTLKHYFSEDELTETQVSLLVALSRQNFIFAGDETLQ KLIEQDYKSLRYKQAKDDMKKIGISLNNQKKIDGVNTRIHEVGNTELFNMALNLINNKRY RNS >gi|312979641|gb|ACRM01000024.1| GENE 215 202644 - 202934 334 96 aa, chain - ## HITS:1 COG:no KEGG:SH2095 NR:ns ## KEGG: SH2095 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 96 1 101 101 89 49.0 4e-17 MNWETKNLIEQIDIIKRKINDAVTTFGWFDDEYFTYDSGHMLTKDEILKHGASYHEHRCY ITQHIDLLSLYLKELDTVLEDIEKASSSTDQSKDNA >gi|312979641|gb|ACRM01000024.1| GENE 216 202941 - 203171 267 76 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTKDEYIEQTEKIHHILGQSAYSNELMQWLVDYCNSKPLEKEISEDLGELLFNLNNKLTI DLADLKMQMTNIRKGS >gi|312979641|gb|ACRM01000024.1| GENE 217 203173 - 203352 262 59 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKLFGILITASSLTSFAVGYVTEDIFNSLALYSPLAVTSWAITEWFNDRKIKKQLLEVE >gi|312979641|gb|ACRM01000024.1| GENE 218 203365 - 203583 332 72 aa, chain - ## HITS:1 COG:no KEGG:SH2100 NR:ns ## KEGG: SH2100 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 71 1 71 72 87 67.0 1e-16 MKKLAYPHLYISRKEHGHNQEYVAKKLGISKERYSLKELNKANFTLPEAKILSELYEMPI DDLFSNSITVGQ >gi|312979641|gb|ACRM01000024.1| GENE 219 203583 - 203804 292 73 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVNRIKEIRLEKSITITELSNITGVSRTTIYKLEEQKSNPSLETISRISSGLKERPEKIF NFSVIQELQKEEA >gi|312979641|gb|ACRM01000024.1| GENE 220 203900 - 204484 544 194 aa, chain + ## HITS:1 COG:no KEGG:PTH_1966 NR:ns ## KEGG: PTH_1966 # Name: hipB # Def: transcriptional regulator # Organism: P.thermopropionicum # Pathway: not_defined # 1 72 1 72 148 76 52.0 6e-13 MNEFGNKLKELRGNTSIRESAKNIGISHTYLDSLEKGYDPRTGKERKPTIEVINKISKYY NYDFFKLVNLAGLFMSISEAPEKVKKDEIQKMKKRFEDFALTKENRVKSEYLDLFSEKLN YNEVMFFEKIYTFFETERYSEELSIKNGADIDPLSFIGIMFDFLVENKNSHKIEAYDDIM NEFSEFLKEYLNIK >gi|312979641|gb|ACRM01000024.1| GENE 221 204494 - 205600 608 368 aa, chain + ## HITS:1 COG:BS_ydcL KEGG:ns NR:ns ## COG: BS_ydcL COG0582 # Protein_GI_number: 16077547 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Bacillus subtilis # 30 364 23 360 368 110 26.0 4e-24 MQHDLKLSHNIYKDAKRGTYYFRIKYYEKTGERKEIKRTGYKQRKEAVKACNAYMDEIEG IGKINQLPFDELVQEYVEWYSARRKASSLKSLKTHTNNHLLPFFKSMDVFNMTTQDIMKF QNKKMKEAHSGEYLKKMHVFLVSILNHAMKYHDLKQNVASLVGNFEIETQKRLNYWTLEQ FNQFYNMLPNLQQKVFFKLLFMSGARKGEIRALTWDDVNFEDDYIHINKTDYHGIVTAPK TKASIRDIYLPAHMMDDLQEYLNWYKDNNIYKSNYVLFGTFFKAFSESAIDRWFTGTLKQ LDETLPDGETFPRIVIHELRHSHASMLVNHGASPMIIAQRLGHSSTEEVTSRYGHLYPST QKEIIKYL >gi|312979641|gb|ACRM01000024.1| GENE 222 205597 - 205782 102 61 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTLSTNLDNVFLCIGAKLGQYWGNKNKKPITTRVKGYIVETAGFEPASRGPDTNFSTCVV Y >gi|312979641|gb|ACRM01000024.1| GENE 223 205929 - 206132 82 67 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQSAITQLLLNYCLICQLYLTECVDDGDNPPTRLISSGDPCRIQKRPRNIIKYKIQFNLN NFTYHNK >gi|312979641|gb|ACRM01000024.1| GENE 224 206157 - 206627 547 156 aa, chain - ## HITS:1 COG:SA0736 KEGG:ns NR:ns ## COG: SA0736 COG0691 # Protein_GI_number: 15926458 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: tmRNA-binding protein # Organism: Staphylococcus aureus N315 # 5 156 3 154 154 242 90.0 2e-64 MAKKKTKSPGTLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKRGE MYINNMHIAPYEEGNRFNHDPLRSRKLLLHKKEIIKLGERTREIGYSIIPLKLYLKHGQC KVLLGIARGKKLHDKRQALKDKAMKRDVDRAMKARY >gi|312979641|gb|ACRM01000024.1| GENE 225 206652 - 209030 1657 792 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15894003|ref|NP_347352.1| fused ribonuclease/ribosomal protein S1 [Clostridium acetobutylicum ATCC 824] # 1 712 1 702 730 642 45 0.0 MNLKQSIEEIVKQPDYEPMSVSDFQDALGLSSADSFRELIKVLVELEQVGLVERTKTDRY QRKASNKNLSSKLIRGTLSQNKKGFAFLRPENEEFEDIFIPPTKINRALDGDTVIVELQK SRGEHRGKVEGEVKSIEKHSVTQVVGTYSEAKHFGFVIPDDKRIMQDIFIPKGQSLGAVD GHKVLVQITKYADGTDNPEGHVSAILGHKNDPGVDILSIIYQHGIEIEFPDEVLKEAESV PEEIKPEEIKGRRDLRNDLTITIDGADAKDLDDAISVKRLDNGHTELTVSIADVSYYVKE GSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPEVDRLTLSCRMEINERGEVVNH DIFDSVIHSNYRMTYDAVNQIITEKNTEVRQQYSEIVPMLDLAQDLSNRLVRMRKRRGEI DFDINEAKVLVNQEGLPTDVILRERGEGERLIESFMLAANETVAEHFNKLEVPFIYRVHE QPKSDRLRQFFDFITNFGIMVKGTGEDIHPSTLQSIQEEVEGRSEQMVISTMMLRSMQQA HYDDTNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLVDHSMNHKEMHQWEETLPEL AEHTSQRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVH ISNMTDDYYQFDERQMALIGERHAKVFRIGDEVTVKVTHVDVDERMIDFQIVGMPLPKKD KSQRPARGKTIQAKTRGKSLDKSKDNLQKNKKKKRKQRKGKNQRQRDKQSSTKHKPFYKD KHIKKKARRKKK >gi|312979641|gb|ACRM01000024.1| GENE 226 209068 - 209808 1112 246 aa, chain - ## HITS:1 COG:SA0734 KEGG:ns NR:ns ## COG: SA0734 COG1647 # Protein_GI_number: 15926456 # Func_class: R General function prediction only # Function: Esterase/lipase # Organism: Staphylococcus aureus N315 # 1 246 1 246 246 409 82.0 1e-114 MQIKLPQPFFFQEGKRAVLLLHGFTGNSSDVRQLGRFLQKKGYTSYAPQYEGHAAPPEEI LKSSPYVWFKDVLDGYDYLVEQGYEDIAVAGLSLGGVFALKLSLNRPVKGIITMCAPAEV KTEGTIYEGFLEYARNFKKYEGKDQATIDKEMEDFHPTETLKELSDTLSRVRNDVDEVLD PILVVQAEKDEMIDPQSANYIYENVDSDEKQIKWYANSGHVITIDKEKEQVFEDVYEFLE GLDWSE >gi|312979641|gb|ACRM01000024.1| GENE 227 210013 - 210246 443 77 aa, chain - ## HITS:1 COG:SA0733 KEGG:ns NR:ns ## COG: SA0733 COG1314 # Protein_GI_number: 15926455 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecG # Organism: Staphylococcus aureus N315 # 1 77 1 77 77 95 81.0 2e-20 MHTLFMVLLIIDCIALITVVLLQESKSNGLSGAISGGAEQLFGKQKQRGVDLFLHRLTIV LAIIFFLIMIGISYFGL >gi|312979641|gb|ACRM01000024.1| GENE 228 210314 - 210784 601 156 aa, chain - ## HITS:1 COG:no KEGG:SH2108 NR:ns ## KEGG: SH2108 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 156 1 156 156 189 78.0 3e-47 MDQQLNQSNKRERIAGQWIGYSSLVFCILLIIHNFIALDAHTAKTLLTLAHQEASSSAVD NILNSFRYTGIMYILAYLAGVIALWNRHKYLWWFMYAVYVSNVLFTLVNLTMVLNAIIET KSILFILPILIVVIGSAILAIYMLIISIVRKSTFNR >gi|312979641|gb|ACRM01000024.1| GENE 229 210958 - 212262 2004 434 aa, chain - ## HITS:1 COG:SA0731 KEGG:ns NR:ns ## COG: SA0731 COG0148 # Protein_GI_number: 15926453 # Func_class: G Carbohydrate transport and metabolism # Function: Enolase # Organism: Staphylococcus aureus N315 # 1 434 1 434 434 797 94.0 0 MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYS GKGVTKAVENVNEIIAPEIVEGEFSVLDQVSIDKMMIQLDGTPNKGKLGANAILGVSIAV ARAAADLLGQPLYKYFGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPTGAESFKEA LRWGAEIFHNLKSILSERGLETAVGDEGGFAPRFDGTEDAVETIIKAIEKAGYKPGEDVF LGFDCASSEFYENGVYDYTKFEGEHGAKRSAAEQVDYLEELISKYPIITIEDGMDENDWD GWKQLTDRIGDKVQLVGDDLFVTNTEILSRGIEQGIGNSILIKVNQIGTLTETFDAIEMA QKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELFET AKFDGIKSFYNLDK >gi|312979641|gb|ACRM01000024.1| GENE 230 212394 - 213911 2357 505 aa, chain - ## HITS:1 COG:SA0730 KEGG:ns NR:ns ## COG: SA0730 COG0696 # Protein_GI_number: 15926452 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphoglyceromutase # Organism: Staphylococcus aureus N315 # 1 505 1 505 505 900 89.0 0 MAKQPTALIILDGFANRESEHGNAVKQAHKPNFDRYYNTYPTTQIEASGLDVGLPEGQMG NSEVGHMNIGAGRIVYQSLTRINKSIEDGDFYENEVLGKAAQHVKDHDSALHVFGLLSDG GVHSHYKHLFALLELAKQKGLDKVYVHAFLDGRDVDQKSAIKYIEETEAKFKELGVGQFA SISGRYYAMDRDKRWDREEKAYNAIRNFEGPSYASAKEGVEANYENDVTDEFVEPFIVEG QNEGVQDGDAVIFFNFRPDRAAQLSEIFTNKAFDGFKVERVNDLFYATFTKYNDNVDAEV VFEKVDLTNTIGEVAQNNNLKQLRIAETEKYPHVTYFMSGGRNEEFEGERRRLIDSPKVA TYDLKPEMSAYEVKDTLLEELDKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLG EVVDKILDMNGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEDVTLRETGRLGD LAPTLLDLLNVEQPSDMTGESLIKH >gi|312979641|gb|ACRM01000024.1| GENE 231 213914 - 214675 1178 253 aa, chain - ## HITS:1 COG:SA0729 KEGG:ns NR:ns ## COG: SA0729 COG0149 # Protein_GI_number: 15926451 # Func_class: G Carbohydrate transport and metabolism # Function: Triosephosphate isomerase # Organism: Staphylococcus aureus N315 # 1 253 1 253 253 422 85.0 1e-118 MRKPIIAGNWKMNKTVQEAKDFVNNLPTLPDEKEVESVICAPTIQLDALISLVNDGKAKG LKIGAQNTYFEDNGAYTGETSPVTLADLGVKYVVIGHSERRELFHETDEDVNKKAHAVFN HGMTPIICVGETDEERENGKANQVVSNQVKEAVKGLSEDQLKEVVIAYEPIWAIGTGKSA TSEDANEMCAQVRKTVADVSSQDVADATRIQYGGSVKPNNVKEYMAQSDIDGALVGGASL KVDDFVQLLEGAK >gi|312979641|gb|ACRM01000024.1| GENE 232 214787 - 215977 1796 396 aa, chain - ## HITS:1 COG:SA0728 KEGG:ns NR:ns ## COG: SA0728 COG0126 # Protein_GI_number: 15926450 # Func_class: G Carbohydrate transport and metabolism # Function: 3-phosphoglycerate kinase # Organism: Staphylococcus aureus N315 # 1 396 1 396 396 663 89.0 0 MAKKIVSDLDLKGKVVLERADFNVPLKNGEITNDNRIVQALPTIKYILEQGGKLVLFSHL GKVKEESDKKELTLKPVADSLTEKLGKEVVFVPETRGEKLESAIKNLNEGDVLLVENTRF EDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGYLMEKEI KFIGGVVNDPHKPVVAILGGAKVSDKIGVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGL SLLEEDKIDFAKELLEKNGDQIVLPVDCKVAKEFSNDAKITEVSIDEIPSDQEAMDIGPK TIELFTKELQGAHTVVWNGPMGVFEFSNFAKGTIGVCKAIANLEDAITIIGGGDSAAAAI SLGFEEDFTHISTGGGASLEYLEGKELPGIKAINDK >gi|312979641|gb|ACRM01000024.1| GENE 233 216122 - 217129 1455 335 aa, chain - ## HITS:1 COG:SA0727 KEGG:ns NR:ns ## COG: SA0727 COG0057 # Protein_GI_number: 15926449 # Func_class: G Carbohydrate transport and metabolism # Function: Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase # Organism: Staphylococcus aureus N315 # 1 335 1 336 336 573 88.0 1e-163 MAVKVAINGFGRIGRLAFRRIQDVEGIEVVAVNDLTDDEMLAHLLKYDTMQGRFNGDVEV VEGGFRVNGKEVKSFEEPDASKLPWGDLDIDVVLECTGFYTEKEKAEAHINAGAKKVLIS APAKGDVKTIVFNTNHKDLDGSETVVSGASCTTNSLAPVAKVLNDEFGIVEGLMTTIHAY TGDQMTQDGPHRKGDKRRARAAAQNIVPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATG SLTEVTVVLEKEVTVEDVNKAMKNAADESFGYTEDEIVSSDVVGMNFGSLFDATQTRVIS VGDKQLVKVAAWYDNEMSYTSQLVRTLEYLAELTK >gi|312979641|gb|ACRM01000024.1| GENE 234 217176 - 218195 940 339 aa, chain - ## HITS:1 COG:SA0726 KEGG:ns NR:ns ## COG: SA0726 COG2390 # Protein_GI_number: 15926448 # Func_class: K Transcription # Function: Transcriptional regulator, contains sigma factor-related N-terminal domain # Organism: Staphylococcus aureus N315 # 1 336 1 336 337 522 77.0 1e-148 MKDLIKLQQKLVPDLVDKMYRRFSILTTISNNEPVGRRSLSEHMDITERVLRTETDILKK QNLIQVKSTGMEITEEGTKVLNQLSDYFKVYKDDNHYAKHIKSNFGIKEVYVIPGNADMH EEVKSEMSRQAGHLLEDILYEDAIVSVTGGSTMANVSRAMHLLPFNVFFVPARGGLGENM VYQANTIAASMAQQSGGYYTTLYVPDNVSESTYNTLLMEPSVVHTLEKIKQANITIHGIG DALKMAHRRQSSDEVIERLQHHQAVGEAFGYYFDAQGHVVQKVKTIGLQLEDLESKDFIY AVAGGMSKGEAIKAYLSIAPKNTILITDEAAAKVILNKE >gi|312979641|gb|ACRM01000024.1| GENE 235 218466 - 218693 235 75 aa, chain + ## HITS:1 COG:no KEGG:SH2115 NR:ns ## KEGG: SH2115 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 75 1 69 69 66 58.0 3e-10 MKYKDNKDVEVLDPSDNRYKDDDYFKREQEYRDISEHHNTIRYHYGCGCPFGCFSSIFIS IVLSIILTFLLNWIF >gi|312979641|gb|ACRM01000024.1| GENE 236 218746 - 219558 1021 270 aa, chain - ## HITS:1 COG:no KEGG:SH2116 NR:ns ## KEGG: SH2116 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 198 1 196 243 65 38.0 1e-09 MSKKNRNLKDYEAHEKKKMSGISKIISTLIVLLLLGGLVFAVFAFVDNSNRVNERLNNQS TEEHKDKKDKDTKSNKKNEESTQENTTSENNTNNSKENKLDNVKNPNVTDNYSNEQNNSI KVQPTNQGKTAQTQQSSKETSTKQPNTNQIQSTQQKENSQTQQKENSQTQQKENAPTQEK ATQEETDKSNENTQSSQSSRSKDSTETSQHKSSNNDTTTTQERANTNQSSQTQKSTMQPS TTEPKTQSSSSTTSESKSNTQQSQRSSNEE >gi|312979641|gb|ACRM01000024.1| GENE 237 219747 - 219917 187 56 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKDTFNTLFKHHSSNKIKSMMLSNDDFDESKNSKFDIFIGILIPIIILFLILFIK >gi|312979641|gb|ACRM01000024.1| GENE 238 220186 - 221085 1158 299 aa, chain + ## HITS:1 COG:SA0724 KEGG:ns NR:ns ## COG: SA0724 COG1090 # Protein_GI_number: 15926446 # Func_class: R General function prediction only # Function: Predicted nucleoside-diphosphate sugar epimerase # Organism: Staphylococcus aureus N315 # 1 299 1 300 300 476 74.0 1e-134 MKQFLITGGTGMVGSHLVNEIKKREAHITILTRSDKQSDEPKITYVNWSKKGWENQVPDI DVVINLAGATLNKRWTSSYKQTIMTSRIQSTESLVHLFEQRQHKPEVLFNASAMGYYPPS LHRTYTEQYQTLPFDFLSDVVYQWERFARRFENFGTRVILGRFSMILSSEGGALQTMKLP YKFYVGGKLGSGRQWYSWIHIDDLVRAILFTIDESNAKGPFNMASPIPERQNLFGYTLGR TMHKPHETWVPSLIMRAVLGEMSTVVLDTQKVLPNKLEALGFNFRYNNLKVALEDLINE >gi|312979641|gb|ACRM01000024.1| GENE 239 221103 - 221285 244 60 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228474326|ref|ZP_04059061.1| ## NR: gi|228474326|ref|ZP_04059061.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 60 1 60 60 63 100.0 3e-09 MNDNKLTYILLLIASVFLILNGIFAFEKSIIMVLLSFFFIIIGLLLGFVAIHYLLKTKKP >gi|312979641|gb|ACRM01000024.1| GENE 240 221338 - 221925 986 195 aa, chain - ## HITS:1 COG:SA0723 KEGG:ns NR:ns ## COG: SA0723 COG0740 # Protein_GI_number: 15926445 # Func_class: O Posttranslational modification, protein turnover, chaperones; U Intracellular trafficking, secretion, and vesicular transport # Function: Protease subunit of ATP-dependent Clp proteases # Organism: Staphylococcus aureus N315 # 1 193 1 193 195 358 95.0 4e-99 MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLQAQDSEKDI YLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGTKGKRFALPNAEV MIHQPLGGAQGQATEIEIAANHILKTREKLNRILAERTGQNIETIQKDTDRDNFLTADEA KEYGLIDHVMQPEDM >gi|312979641|gb|ACRM01000024.1| GENE 241 222242 - 223186 1122 314 aa, chain - ## HITS:1 COG:SA0722 KEGG:ns NR:ns ## COG: SA0722 COG1481 # Protein_GI_number: 15926444 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 314 1 314 314 507 90.0 1e-143 MSFASDMKSELTRIEVDESNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSL IKRIFNVEVEILVRKKMKLKKNNIYICRTKVRVKEILDELGILKNGIFVHDIDASMIKDD EMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQYEGHAEGLTKLMNSYGLNAKHLERKKGS ISYLKEAEKISEFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQ VQSIQLIDEEIGLDNLPDRLREIAKLRVEHQEISLKELGEMISNGPISKSGVNHRLRKLN ELADKIRNGEKVEL >gi|312979641|gb|ACRM01000024.1| GENE 242 223284 - 224270 1073 328 aa, chain - ## HITS:1 COG:SA0721 KEGG:ns NR:ns ## COG: SA0721 COG0391 # Protein_GI_number: 15926443 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 326 1 326 331 478 73.0 1e-135 MKQLKVVLIGGGTGLSVLARGLREYPIDITAIVTVADDGGSTGKIRDEMSIPAPGDIRNV IAALSDAEPILEELFQYRFEEHQIEGHSLGNLLLAALTNIKNDFGHAVKELSKILNIKGK VIPSTNTNVMLNAVLEDGEIVEGESKIPKKNKKIRRVYLEPSNVEPMQEAVDALQEADLI VLGPGSLYTSVISNLCIEGISKAIISSQAPKLYISNIMTQPGETNDYDVYDHIKAIHQHA GEPFIDYVICSNDAFDEQILQRYKERNAHPVNMNKIKLTENHIKMITSKNLVEVYDHVLV RHNTKVLANLIYDLALELTSTIQFKPKK >gi|312979641|gb|ACRM01000024.1| GENE 243 224267 - 225181 902 304 aa, chain - ## HITS:1 COG:SA0720 KEGG:ns NR:ns ## COG: SA0720 COG1660 # Protein_GI_number: 15926442 # Func_class: R General function prediction only # Function: Predicted P-loop-containing kinase # Organism: Staphylococcus aureus N315 # 8 304 7 303 303 476 78.0 1e-134 MVNQINDEMSKSELLVITGLSGAGKSLVIQCLEDIGFFCVDNLPPILLPKLVELMEQGNP SLQKVAIAIDLRGKELFKSLVDEIDAIKTRNDVIVDIMFLEATTEKLISRYKESRRAHPL NQNGQMSLIDSILEEQQLLSNIRSIANYIIDTTELKPKELKERIKRRFANEKMNSFSINV TSFGFKHGIQKDADLVFDVRFLPNPYYVEDLRPMTGEDEAVYNYVMKWKETETFFEKLMD LLIFVIPGYKKEGKSQLVIAIGCTGGQHRSVALAKRIGEELNDIFDYNVYVHHRDAHIES GVKK >gi|312979641|gb|ACRM01000024.1| GENE 244 225335 - 226276 573 313 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988049|ref|ZP_01819512.1| 30S ribosomal protein S9 [Streptococcus pneumoniae SP6-BS73] # 6 307 2 306 306 225 41 2e-57 MNEVDFDVAIIGAGPAGMTAAVYASRANLNTVMIERGMPGGQMANTEEVENFPGFEMITG PDLSTKMFEHAKKFGASYQYGDIKSIEDNGDHKVINLGNKTITARAVIISTGAEYKKIGV PGEQELGGRGVSYCAVCDGAFFKNKNIFVIGGGDSAVEEGAFLTKFADKVTIVHRRDELR AQKILQDRAFKNEKIDFIWSHTLKSINEKDGKVGSVTLVSTKDASEQTLDADGVFIYIGM KPLTAPFNNLGITNDMGYIITKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSA IDYIEELNDKEEA >gi|312979641|gb|ACRM01000024.1| GENE 245 226340 - 227779 1007 479 aa, chain - ## HITS:1 COG:SA0718 KEGG:ns NR:ns ## COG: SA0718 COG0457 # Protein_GI_number: 15926440 # Func_class: R General function prediction only # Function: FOG: TPR repeat # Organism: Staphylococcus aureus N315 # 1 479 1 479 479 551 63.0 1e-156 MARKEQKIIPMTFDENFYRKMADQKYKQRNYRKAAEYYENVLDLSPEDFDIKLKYADCLN ELNLNKKAEKMFYESIINDHNVSESYYQLSQLNIKLNEPNKAFLFGINYVVLSNDDSFRE ELENMFEVSYIEENKIEMEAQLFAVQLLFQYLFAQGRLQEARTYILKQNDDIQSHRVIRN LLAMCYLYLSEYEIAKELFETLLAEDNSDVHALCHYTLLLYNTNETEKYHKYIKILNKVM PMNEDESFKLGIVLSYLKQYKASQQLLLPLYKKGKFVSVQMFNALSYNYYYLGNKEQSKL FWDKLLQISEVNVGYAPWVLEESKYTFEQKILPLLLDDDSHYRLYGVFLLNQLNGKEILM TEDIWSVLENMNDYEKLYLTYLVQGLHLNKLDFIHKGLKKIYDVEELSFDTELFVSWIDK GEALIVEGVNFKELNRYIAAHVYLYYRYHKKHITKKKIIEIFNTTRYKLDNAIDKLLSI >gi|312979641|gb|ACRM01000024.1| GENE 246 227797 - 228276 456 159 aa, chain - ## HITS:1 COG:SA0717 KEGG:ns NR:ns ## COG: SA0717 COG0110 # Protein_GI_number: 15926439 # Func_class: R General function prediction only # Function: Acetyltransferase (isoleucine patch superfamily) # Organism: Staphylococcus aureus N315 # 1 156 1 156 161 184 59.0 4e-47 MRRLTIINTQSMNPLWRIYQFVRFSKVLKNTVIIEISRFIPFLNVKRYVYIHFLKMSIGE RTAFAYKVMPDIFHPQLISIGSNTVIGYNTTILTHEILVNEYRYGRVDIGSHTLIGANVT ILPGVKIGHNVMIKAGTIVSKDVPNDTIAFGNPMQIHNK >gi|312979641|gb|ACRM01000024.1| GENE 247 228276 - 229118 817 280 aa, chain - ## HITS:1 COG:SA0716 KEGG:ns NR:ns ## COG: SA0716 COG0682 # Protein_GI_number: 15926438 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Prolipoprotein diacylglyceryltransferase # Organism: Staphylococcus aureus N315 # 5 280 5 279 279 402 76.0 1e-112 MFFNLNYINPTAIDIGPLSIKWYGIIIAVGILIGYFIAQESLKSIGLHKDTLVDIIFYCA IFGFLVARIYFVIFQWPYYMENPSEIPKIWHGGIAIHGGLIGGFITGIILCKLKNLNPFQ LGDIVAPSIILAQGIGRWGNFMNHEAHGGPVSRTFLENMHIPEFIIRNMYIEGVYYHPTF LYESIWDILGFIILITLRKYLRVGETFSLYLIWYSIGRFFVEGLRTDSLMLTSHIRVAQL VSIILIIIGMTLIIYRRIKYQPAIYKNAGPLTWNSRGKVK >gi|312979641|gb|ACRM01000024.1| GENE 248 229122 - 230057 1205 311 aa, chain - ## HITS:1 COG:SA0715 KEGG:ns NR:ns ## COG: SA0715 COG1493 # Protein_GI_number: 15926437 # Func_class: T Signal transduction mechanisms # Function: Serine kinase of the HPr protein, regulates carbohydrate metabolism # Organism: Staphylococcus aureus N315 # 1 309 1 309 310 512 87.0 1e-145 MLTTERLVKVLKLKLFTGEKGLNKTIKNIDISRPGLEMAGYFSHYAANRIQLLGTTELSF YNLLPDEERRGRMRKLCRPETPAIIVTRGLEPPQELIEAAQEMETPLIVSKDATTSLMSR LTTFLEHELAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIR EITKDELIGTPPKLIEHLLEIRGLGIINVMTLFGAGSILTQKQIRLNINLENWDKNKLYD RVGLNEETLKILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFNQRLNEE ILKNGNQNEGI >gi|312979641|gb|ACRM01000024.1| GENE 249 230236 - 233076 3169 946 aa, chain - ## HITS:1 COG:SA0714 KEGG:ns NR:ns ## COG: SA0714 COG0178 # Protein_GI_number: 15926436 # Func_class: L Replication, recombination and repair # Function: Excinuclease ATPase subunit # Organism: Staphylococcus aureus N315 # 1 946 1 946 948 1683 90.0 0 MKGPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLS AYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKA FCPYHGIEIESQTVQQMVDRILELEERTKIQILAPLVSHRKGSHEKLIEDIGKKGYVRLR VDGEVVDVNEVPALDKNKNHTIEVVVDRLVVKSGIETRLADSIETSLELGEGNLTVDVIG GEELKFSENHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQRLTVDLDLVVPDTNKT LNEGAIEPWEPTSSDFYPTLLKRVCEVYKINMDKPYKKLTDRQKDILMNGSGDKEIEFSF HSRNGGTRRRKMKFEGVVPNIDRRYHESPSEYTREMMSRYMTELPCETCHGKRLSKEALS VYVGGYNIGEVVEYSIKNALKFYENIELSEQDKAIAKQILIEIISRLTFLNNVGLDYLTL NRSSGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNT LIVVEHDDDTMRAADYLVDVGPGAGNHGGEIVSSGTPKKVMKDKKSLTGQYLSGKKRIDV PEHRREVTNRKISIKGAKSNNLKDVDVDIPLSVMTVVTGVSGSGKSSLVNEVLYKSLAQT INNSKVKPGEHDEIKGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAK IRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKG KNIADVLAMTVEEATYFFENIPKIHRKLQTLVDVGLGYITLGQQATTLSGGEAQRVKLAS ELHKRSTGRSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYII DLGPEGGEGGGTIVATGTPEDIASVEASYTGKYLKTVLERDKVRDE >gi|312979641|gb|ACRM01000024.1| GENE 250 233084 - 235069 2221 661 aa, chain - ## HITS:1 COG:SA0713 KEGG:ns NR:ns ## COG: SA0713 COG0556 # Protein_GI_number: 15926435 # Func_class: L Replication, recombination and repair # Function: Helicase subunit of the DNA excision repair complex # Organism: Staphylococcus aureus N315 # 1 661 3 663 663 1164 93.0 0 MVEHHPFKLNSEFEPQGDQPQAIKKIVEGVKAGKRHQTLLGATGTGKTFTMSNVIKEVGK PTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDE IDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVD VQYSRNDIDFQRGTFRVRGDVVEIFPASREEMCIRVEFFGDEVDRIREVNYLTGEVIRER EHFAIFPASHFVTREEKMKVAIERIEKELEERLKELKAENKLLEAQRLEQRTNYDLEMMR EMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQIRGMFNGDQARK KVLVDHGFRLPSAMDNRPLKFEEFEQKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLL DPKIDVRPTKNQIDDLLSEIQERIDRNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSE IKTLERIEIIRDLRMGTYDAVVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTI GRAARNDKGEVIMYADKITDSMQYAIDETQRRREIQMTHNEKYGITPKTINKKIHDVISA TVDNDETNEKQQTEVPKKMTKKERQKTIENIEKEMKKAAKDLDFERATELRDMLFELKAE G >gi|312979641|gb|ACRM01000024.1| GENE 251 235338 - 235565 287 75 aa, chain - ## HITS:1 COG:SA0712 KEGG:ns NR:ns ## COG: SA0712 COG4897 # Protein_GI_number: 15926434 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 75 1 75 78 107 80.0 4e-24 MVWYTLAAFFPCILVILFSVITRSKWVGVIVTLILIAASVYKGFFHNEWIIFLDVVSILA GYVIIDNLEFHKHQD >gi|312979641|gb|ACRM01000024.1| GENE 252 235571 - 236218 691 215 aa, chain - ## HITS:1 COG:SA0711 KEGG:ns NR:ns ## COG: SA0711 COG1896 # Protein_GI_number: 15926433 # Func_class: R General function prediction only # Function: Predicted hydrolases of HD superfamily # Organism: Staphylococcus aureus N315 # 1 212 1 212 216 341 87.0 5e-94 MGVHQYFKRLSDLEKLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGNSIDWKSL YEKALNHDFAEVFTGDIKTPVKYASRELKMLFSQVEEEMVDTFINEEIPKPYQDIYRKRL QEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEDLFFEIYEHSLETIMQFDHLSSVQD FIDHVIPEMLTENFIPRAELRETTMTILERRRRNE >gi|312979641|gb|ACRM01000024.1| GENE 253 236244 - 236408 80 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLKHQQSLCFVDVFLVINNAMYCLKKEIKVMKLSQLKLFTKRLIDIINTSIISI >gi|312979641|gb|ACRM01000024.1| GENE 254 236427 - 237317 948 296 aa, chain - ## HITS:1 COG:SA0710_2 KEGG:ns NR:ns ## COG: SA0710_2 COG3942 # Protein_GI_number: 15926432 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 177 296 15 134 134 137 61.0 3e-32 MLKKSMTVTFASIAAITGLNTLAHAQQTHIVKEKTNVEALAQQFSTTADEIKKLNHIGNE EVEKDISIVVPDKDIVEVKSGDTLNNIANAHHLTLDELYAFNPGVKPLIHPGDLIAVSDK GSATLESQLISDSSVYATPYSSEIETAPLSYNSAETASYVASPSYVTSNNYNTETVSAPV YYNNSALNNQGNHYYFGNCTYYAFDRRQQLGRSVGSYWGNANNWASSARNAGLVVDHRPE VGAVFQTPAGYYGHVGIVERVNNDGSFYVSEMNWNGHFNDVTNRTIYNSSSYNFIH >gi|312979641|gb|ACRM01000024.1| GENE 255 237538 - 238536 1223 332 aa, chain - ## HITS:1 COG:SA0709 KEGG:ns NR:ns ## COG: SA0709 COG1186 # Protein_GI_number: 15926431 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Protein chain release factor B # Organism: Staphylococcus aureus N315 # 2 331 1 330 330 579 86.0 1e-165 MMTEPDFWDNQNKAQDVIDKNNALKSIVNGYYELNHKLEDMDATWELLQEEYDDEIKEDL EQDIVSFREQIDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRYGEQQ GFKIETIDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFAS CDVIPEFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNER SQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHR TNEETAKVDAVMDGDIAPFIEAYLRQTMSQND >gi|312979641|gb|ACRM01000024.1| GENE 256 238577 - 238651 133 24 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELSEIKRNIDEYNNDLEQIRGSL >gi|312979641|gb|ACRM01000024.1| GENE 257 238766 - 241303 3300 845 aa, chain - ## HITS:1 COG:SA0708 KEGG:ns NR:ns ## COG: SA0708 COG0653 # Protein_GI_number: 15926430 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecA (ATPase, RNA helicase) # Organism: Staphylococcus aureus N315 # 1 843 1 843 843 1429 89.0 0 MGFLSKIVDGNKKEVKRLSKKADEVLALEEKMAILTDEEIRNKTKQFQEEAQAIEDVKKQ NDYLDKILPQAFALVREGAKRVFNMSPYKVQVMGGIAIHKGDIAEMRTGEGKTLTATMPT YLNALAGRGVHVITVNEYLSSVQSEEMAELYEFLGLTVGLNLNSKSTEEKREAYAKDITY STNNELGFDYLRDNMVNYAEERVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLY TQANVFAKMLKADEDYKYDEKTKAVHLTEQGADKAERMFKIDNLYDVQNVDIISHINTAL RAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVKIQNESKTMAS ITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRQDKSDLIYISQKGK FDAVVDDVVEKHKQGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVANA GQKGAVTIATNMAGRGTDIKLGEGVEEIGGLAVIGTERHESRRIDDQLRGRSGRQGDKGD SRFYLSLQDELMVRFGSERLQKMMNRLGMDDSTPIESKMVSRAVESAQKRVEGNNFDARK RILEYDEVLRKQREIIYNERNSIIDSEDSSEIVIAMMRTTLQRAINYYINDEDDNPDYGP FINYVNDVFIQEGELTEEEIKGKDSEDIFEVVWTKIEKGYESQKEKIGDQMPEFERMILL RSIDTHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDLMMQAIEEDTSKYILK SVIQVDEQVEREKTTDFGKAQHVSAEDGKEKAKKQPIVKGEKIGRNDPCPCGSGKKYKNC HGKED >gi|312979641|gb|ACRM01000024.1| GENE 258 241766 - 242341 808 191 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15923742|ref|NP_371276.1| ribosomal subunit interface protein [Staphylococcus aureus subsp. aureus Mu50] # 1 191 1 189 190 315 81 9e-85 MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNNVPNAVAHVKVKTYQNSATKIEVTIPL KNVTLRAEERHDDLYAGIDLVTSKLERQVRKYKTRVNRKNRDNGEPEPFIAEQQTVVNED VEATSESSNENEIEIIRSKQFSLKPMDSEEAVLQMDLLGHDFYIFTDRETDGTSIVYRRK DGKYGLIETTE >gi|312979641|gb|ACRM01000024.1| GENE 259 242402 - 243079 337 225 aa, chain - ## HITS:1 COG:SA0706 KEGG:ns NR:ns ## COG: SA0706 COG1040 # Protein_GI_number: 15926428 # Func_class: R General function prediction only # Function: Predicted amidophosphoribosyltransferases # Organism: Staphylococcus aureus N315 # 1 225 1 224 224 243 52.0 2e-64 MNKCIQCATPIHEELSIFNFYKSPQQFCETCTKQWQAIKLDINDKKRCTRCLNYKIKASD ECLDCKCLNQQFTLMSQLYCEYKYDGIMKETIHHYKFMKDYYLAEVLASKLTLPKTSYDY IVPIPSPYKRDEHRTFNPVTTVLDKMGVSYIELLGTRSRPKQSRLGKRERFKADNPFYLK ENIDITNKNILLIDDIYTTGLTVHYAGSVLCNKKVRKFKVFAFSR >gi|312979641|gb|ACRM01000024.1| GENE 260 243072 - 244154 802 360 aa, chain - ## HITS:1 COG:SA0705 KEGG:ns NR:ns ## COG: SA0705 COG4098 # Protein_GI_number: 15926427 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) # Organism: Staphylococcus aureus N315 # 61 360 1 300 300 379 61.0 1e-105 MDNITEYKIIKSKNVKSEGLYTLSFKLSEQQCYASEKILSAIENCENLLLYAVTGAGKTE MIYEGISLSRKRGFNVAVISPRVDVVIEISQRIKEVFLKENIDVLHQSSKQQYNGHFVIC TIHQLYRFKNHFEVIFVDEVDAFPLPMDHHLQNAIKQAAKPLSTLIYMTATPPRHLLHQI PKHRIIQLPARFHRHPLPVPKFKYFKLNMNRTQSFLKYMLLNQIEHKRFTLVFFNNIENM IKISEYYKKIFSDLICISSEDALRFEKVKALREGKHRIVFTTTILERGFTMAQLDVIVIN ADTFEKAALVQIAGRVGRKQEAPTGKVLFLHEGVSISMLMAKKDITKMNKLGIQRGWIDE >gi|312979641|gb|ACRM01000024.1| GENE 261 244461 - 245327 1104 288 aa, chain - ## HITS:1 COG:SA0704 KEGG:ns NR:ns ## COG: SA0704 COG1307 # Protein_GI_number: 15926426 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 285 1 285 288 348 63.0 9e-96 MKIAVMTDSTANLPKHIIEKYQIPVAPLSVTFDDGETFTEHPDLSKESFYKKMAASKTIP TTSQPAIGEWIKNYEELRDKGYTDVIVFNLSSGISGSYQSATQAGEMVDGIQVHTFDTRL ASMVEGSYVIYTLKLIEDGATPNEIIEELTSIRKDTGAYLFVDDLKNLQKSGRITGAQAW IGTLLQMKPVLKFEEDGKIHPLEKVRTRKRAYNSIEQHALDIAKNINDVTVFVINGDKTK EGKDFCAKLKEKYSNINIQYCEYGPVIASHLGSGGIGVGYFPRKIVIK >gi|312979641|gb|ACRM01000024.1| GENE 262 245468 - 246109 639 213 aa, chain + ## HITS:1 COG:SA0703 KEGG:ns NR:ns ## COG: SA0703 COG1739 # Protein_GI_number: 15926425 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 212 1 212 213 307 76.0 1e-83 MSDRVITIKKEHIIENTINKSRFIAHIKPVSSEDEAKMFIEEVKQTHKEATHNCSAYTVG NQMNIQKANDDGEPTGTAGIPMLEILKKLDIHNACVVVTRYFGGIKLGGGGLIRAYSGAV RDVIYDIGRVELRNAIPTTVTINYDLTGKFEYELASTSFFLRDKVYTDKVSYKIDVVETE YDSFIEFLNRNTASQYDLEKDTPKQLPFDIETN >gi|312979641|gb|ACRM01000024.1| GENE 263 246174 - 247247 1089 357 aa, chain - ## HITS:1 COG:SA0702 KEGG:ns NR:ns ## COG: SA0702 COG0472 # Protein_GI_number: 15926424 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase # Organism: Staphylococcus aureus N315 # 1 346 1 346 351 431 79.0 1e-121 MYTLLLIVVTLVISLIITPIIIKVSFKFNLVDRPNYRKVHTKLVSVMGGTVILLSFLIGL WLGHPIERAVKPLVIGLIIMYFVGIIDDIYDLKPILKLIGQIIAASVVVFYGITIDFISF PIGPTIHFGILSIPITIIWIVAITNAINLIDGLDGLASGVSVIGLTTIGFIAILQGNVFI IMICSLLIGALLGFLFFNFHPATIFLGDSGALMIGFIIGFLSLLGFKNITFISLFFPIVI LAVPFIDTLFAMIRRVRNGQHIMQADKSHLHHKLLALGYTHRQTVLLIYSIAIMFSLSSI ILYLSQPLGVLLMFILIVITIELIVEFTGLIDDSYRPILNLISKKNDDASRHKTNHK >gi|312979641|gb|ACRM01000024.1| GENE 264 247620 - 248690 864 356 aa, chain + ## HITS:1 COG:SA0701 KEGG:ns NR:ns ## COG: SA0701 COG2199 # Protein_GI_number: 15926423 # Func_class: T Signal transduction mechanisms # Function: FOG: GGDEF domain # Organism: Staphylococcus aureus N315 # 1 356 1 356 356 484 74.0 1e-137 MFEATIYNIAVMVAGIYLFHRLQYSENKIMIFSKGYVTILMTLVALLITAYPIPFHHQYL IRLTFVPLLFLGRYTNVGYTFIASLIISLVDIFLFGNSFFYSVVLIIIGIIVSLIGPFLK KNDIITLIILNAISIVIIFVLSIFTTLYDLTELIILIPISFVLTITSAVTFVDIWHFFSL VTRYENEDKYDYLTGLGNVKEFDRHLNKISQKAEIEHTSLALLLVDIDGFKDVNDTYTHK AGDAVLKQMSQLLKNYVPHQFKIFRNGGEEFSIVIFDYSLDQSVKLAENIRMAVEKSSFH LPNKEVIKLSVSIGVGYLSPDEYKSQRKVFKDADDMVHVAKKEGRNQVMFNPIIKL >gi|312979641|gb|ACRM01000024.1| GENE 265 248898 - 249659 773 253 aa, chain + ## HITS:1 COG:SA0700 KEGG:ns NR:ns ## COG: SA0700 COG2966 # Protein_GI_number: 15926422 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 253 1 253 253 381 87.0 1e-106 MNNSITIIDENKVIDVVLIAGRILLESGAETYRVEDTMNRIAHSYGLNDTYSFVTSTAII FSLNDRTNTRLIRIRDRTTDLEKIALTNSLSRKIAKNELTIDEAKSELIHLSKASLQYSF LLNFFAAAIACGFFLLMFGGVVSDCWIAILAGGAAFLTFSFVQRFIQIKFFSEFVASAVV ITIAVTFTKLGIATNQNIITISSVMPLVPGILICNAIRDLMAGELLAGMSRGVEAALTSF AIGAGVAIVLLIL >gi|312979641|gb|ACRM01000024.1| GENE 266 249676 - 250170 376 164 aa, chain + ## HITS:1 COG:SA0699 KEGG:ns NR:ns ## COG: SA0699 COG3610 # Protein_GI_number: 15926421 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 164 1 164 164 265 89.0 4e-71 MLFYLFHFVISFISTVLFSIIFNAPKRLLLACGFVGALAWTIYQYTVDMDLGKVGAAFLG SLILGLLSHVMSRRYKRPVIIFIVPGIIPLVPGGTAYEATRFLVSNDYTHAVNTFLEVTL ISGSIAFGILVAEILYYIYTRIKQFYGKIKGKTYRKSYNMNNRV >gi|312979641|gb|ACRM01000024.1| GENE 267 250185 - 251414 1617 409 aa, chain + ## HITS:1 COG:SA0698 KEGG:ns NR:ns ## COG: SA0698 COG2195 # Protein_GI_number: 15926420 # Func_class: E Amino acid transport and metabolism # Function: Di- and tripeptidases # Organism: Staphylococcus aureus N315 # 1 406 1 406 408 664 79.0 0 MKVQIIDRLSRYVKIDTQSNPESKSTPSTEKQWDLLHLLQKELQDFGLETELDNNGYLFA TLESNIEKEVPTVGFLAHVDTSPDFNATNVNPQIIEDYNGQPIKLGQTNRVLSQDVFPEL KKLEGHTLMITDGTSLLGADDKAGVVEIMEAVKYLQTHPEIKHGRIRIAFTPDEEIGRGP HKFNVERFNADFAYTMDGSEFGELQFESFNAAEATITAHGVNVHPGSAKNVMVNAIGLVH QFHSLLPANEVPERTEGYEGFYHLMKIEGTVEKASLQYIIRDHDRKSFELKKKKLLEIRD DINIHYEGYPVKVDIEDQYYNMAEQIKPHPYIIDIPKKVFADLEIKPNTAPIRGGTDGSQ LSFKGLPTPNIFTGCGNFHGPFEYASIDVMEKAVQVIIGIAQEVTQYEK Prediction of potential genes in microbial genomes Time: Sun May 29 09:35:46 2011 Seq name: gi|312979640|gb|ACRM01000025.1| Staphylococcus hominis subsp. hominis C80 cont1.25, whole genome shotgun sequence Length of sequence - 36361 bp Number of predicted genes - 36, with homology - 35 Number of transcription units - 17, operones - 9 average op.length - 3.1 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 13 - 1137 1262 ## COG1929 Glycerate kinase - Prom 1195 - 1254 8.9 - Term 1281 - 1314 -0.3 2 2 Tu 1 . - CDS 1342 - 1662 373 ## SH2150 hypothetical protein - Prom 1719 - 1778 8.7 3 3 Tu 1 . - CDS 1789 - 2685 788 ## SH2151 hypothetical protein - Prom 2705 - 2764 9.6 + Prom 2669 - 2728 7.8 4 4 Op 1 . + CDS 2763 - 3278 324 ## SH2152 hypothetical protein + Prom 3282 - 3341 6.8 5 4 Op 2 1/0.667 + CDS 3372 - 4298 1179 ## COG0812 UDP-N-acetylmuramate dehydrogenase 6 4 Op 3 . + CDS 4326 - 4640 178 ## COG4357 Uncharacterized conserved protein + Term 4774 - 4822 10.6 - Term 4762 - 4810 14.4 7 5 Op 1 5/0.000 - CDS 4869 - 5903 1341 ## COG4607 ABC-type enterochelin transport system, periplasmic component - Prom 5934 - 5993 3.1 8 5 Op 2 10/0.000 - CDS 6010 - 6780 250 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 9 5 Op 3 11/0.000 - CDS 6777 - 7736 944 ## COG4605 ABC-type enterochelin transport system, permease component 10 5 Op 4 1/0.667 - CDS 7726 - 8694 889 ## COG4606 ABC-type enterochelin transport system, permease component - Prom 8746 - 8805 12.5 - Term 8808 - 8863 12.4 11 6 Op 1 24/0.000 - CDS 8879 - 9847 1212 ## COG0208 Ribonucleotide reductase, beta subunit - Prom 9890 - 9949 5.8 12 6 Op 2 18/0.000 - CDS 9961 - 12066 2368 ## COG0209 Ribonucleotide reductase, alpha subunit 13 6 Op 3 . - CDS 12029 - 12427 520 ## COG1780 Protein involved in ribonucleotide reduction - Prom 12528 - 12587 6.6 + Prom 12933 - 12992 11.2 14 7 Op 1 1/0.667 + CDS 13165 - 14031 1032 ## COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily 15 7 Op 2 1/0.667 + CDS 14042 - 14542 488 ## COG0780 Enzyme related to GTP cyclohydrolase I + Term 14554 - 14601 1.6 + Prom 14688 - 14747 11.2 16 8 Tu 1 . + CDS 14826 - 16331 1776 ## COG3104 Dipeptide/tripeptide permease + Term 16346 - 16401 11.1 + Prom 16379 - 16438 8.9 17 9 Tu 1 . + CDS 16460 - 17383 966 ## COG1597 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase + Term 17404 - 17449 2.1 - Term 17386 - 17443 6.0 18 10 Op 1 1/0.667 - CDS 17446 - 17982 620 ## COG4502 Uncharacterized protein conserved in bacteria - Prom 18012 - 18071 6.9 - Term 18021 - 18064 3.1 19 10 Op 2 1/0.667 - CDS 18077 - 19132 1321 ## COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase - Prom 19193 - 19252 8.2 - Term 19218 - 19256 6.4 20 11 Op 1 12/0.000 - CDS 19268 - 20782 2199 ## COG1732 Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) 21 11 Op 2 1/0.667 - CDS 20786 - 21742 1159 ## COG1125 ABC-type proline/glycine betaine transport systems, ATPase components - Prom 21857 - 21916 10.5 - Term 21854 - 21909 8.1 22 12 Op 1 1/0.667 - CDS 21932 - 23710 1687 ## COG0514 Superfamily II DNA helicase 23 12 Op 2 . - CDS 23724 - 25604 2208 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains - Prom 25664 - 25723 8.2 + Prom 25575 - 25634 6.5 24 13 Tu 1 . + CDS 25716 - 26534 1296 ## COG0428 Predicted divalent heavy-metal cations transporter + Term 26541 - 26598 5.7 - Term 26745 - 26781 7.5 25 14 Tu 1 . - CDS 26945 - 28762 2026 ## COG1368 Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily - Prom 28824 - 28883 9.3 - Term 28986 - 29022 0.0 26 15 Op 1 21/0.000 - CDS 29169 - 30173 1107 ## COG1984 Allophanate hydrolase subunit 2 27 15 Op 2 . - CDS 30173 - 30877 761 ## COG2049 Allophanate hydrolase subunit 1 28 15 Op 3 . - CDS 30919 - 31125 164 ## gi|228475304|ref|ZP_04060028.1| conserved hypothetical protein 29 15 Op 4 . - CDS 31085 - 31171 63 ## 30 15 Op 5 9/0.000 - CDS 31179 - 31787 547 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 31 15 Op 6 35/0.000 - CDS 31788 - 32930 962 ## COG0147 Anthranilate/para-aminobenzoate synthases component I 32 15 Op 7 . - CDS 32914 - 33507 549 ## COG0512 Anthranilate/para-aminobenzoate synthases component II + Prom 33720 - 33779 10.8 33 16 Op 1 11/0.000 + CDS 33840 - 34517 680 ## COG0603 Predicted PP-loop superfamily ATPase 34 16 Op 2 22/0.000 + CDS 34514 - 34933 466 ## COG0720 6-pyruvoyl-tetrahydropterin synthase 35 16 Op 3 . + CDS 34933 - 35649 689 ## COG0602 Organic radical activating enzymes + Prom 35668 - 35727 9.0 36 17 Tu 1 . + CDS 35758 - 36361 308 ## SH2189 hypothetical protein Predicted protein(s) >gi|312979640|gb|ACRM01000025.1| GENE 1 13 - 1137 1262 374 aa, chain - ## HITS:1 COG:SA0697 KEGG:ns NR:ns ## COG: SA0697 COG1929 # Protein_GI_number: 15926419 # Func_class: G Carbohydrate transport and metabolism # Function: Glycerate kinase # Organism: Staphylococcus aureus N315 # 1 368 1 368 374 498 69.0 1e-141 MKILVAMDEFNGIISSYQANRYVEEAIASQIDHADIVQVPLFNGRHELLNSVFLWHSGTK YKVNVHDADMNEIETIYGQTEEGTVIIESNLFSKGHKAIEQRTSFGLGEVILDALNKDTD HIIISLGGMDSFDGGVGMLQALGAKFYDDENRELDAREGAQMIKFIRHIDISGLPSTLEN VRLQVMTDFSSKLYGKNSEIMKLSYNHQIPHKKAVEIDNLIWYLNEIMKNELHIALGPIE RGGAGGGIAAVLKALYNTEILTSHELVNQITHLDELVSQADLIIFGEGLKEEDHMLETTT LTIAELTEKYHKPSIAICATNDKFDIFNHHRVTAMFNTFIEMPKTYTDFKMGLQIRHYTV QALRLLKTTAKGIK >gi|312979640|gb|ACRM01000025.1| GENE 2 1342 - 1662 373 106 aa, chain - ## HITS:1 COG:no KEGG:SH2150 NR:ns ## KEGG: SH2150 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 106 1 106 106 173 88.0 2e-42 MAIKLSSIDQFEQVLEEHNDVFVLKHSDTCPISAAAFDQFNKFLYERDIDGYYLVVQEER KLSDYIAEKTNVKHESPQAFYFVDGKAVWNASHSDINVSTLAQAEE >gi|312979640|gb|ACRM01000025.1| GENE 3 1789 - 2685 788 298 aa, chain - ## HITS:1 COG:no KEGG:SH2151 NR:ns ## KEGG: SH2151 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 11 298 1 288 291 244 57.0 3e-63 MYNTGVRSAKMKKLIILSLCSLYCLILSGCGENNNEDLNRFKQHLSKVETKQKSVEKVMN QLELNRLNDISKTDTTDKNKKSFERLQKNINHRLVPEFKEYEKEAKHLPAKTNKTRQLKK DYLNHVSKQHQSINEIKSFVDLYNQSVVENEKILNYTHSFEINRALVEKDIRKTNNQENA HLLKSKIENNNRNLRKTAQKYLEKDNYPTSKAINEHIKPLIQKQIKDLTQTNITDSHVNN ARKNAIEMYYNLLNYYETRETTIKIEDQLSKINVEKLPKTGKDLSKGNHNFKTKLEKV >gi|312979640|gb|ACRM01000025.1| GENE 4 2763 - 3278 324 171 aa, chain + ## HITS:1 COG:no KEGG:SH2152 NR:ns ## KEGG: SH2152 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 171 1 171 171 210 65.0 1e-53 MYASVQSFINCTNVNDYHQLYEDTKALLFNLLDSPVKFTQHIGGTKHFSYPTEPILDVLV GVNNLHDITSLDEKRLNYVGFYRLHHPYKKKVMMAKFDNMINLKQIIRLHIIQIDTPLFT QYLAIDHVLSTQKHVAQMFSNQKNEFINLNSTIRYYENQKQKFFDNLYHTL >gi|312979640|gb|ACRM01000025.1| GENE 5 3372 - 4298 1179 308 aa, chain + ## HITS:1 COG:SA0693 KEGG:ns NR:ns ## COG: SA0693 COG0812 # Protein_GI_number: 15926415 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: UDP-N-acetylmuramate dehydrogenase # Organism: Staphylococcus aureus N315 # 5 306 4 305 307 524 83.0 1e-149 MLEQEDILKDLKSLVPDNIIKVNEPLKRYTYTKTGGNADFYLSPIENEQVQTIVRYAQEH QLPVTYLGNGSNIIIREGGIRGIVISLLSLNHINVSDDAIIAGSGAAIIDVSRAARDHVL TGLEFACGIPGSVGGAVYMNAGAYGGEIKDCIDYALCVNEHGDLIQLTKEQLHLDYRNSV VQKQHLVVLEAAFTLEPGNLNEIQAKMDDLTERRESKQPLEYPSCGSVFQRPPGHFAGKL IQDSNLQGHRIGGVEVSTKHAGFMVNVDNGTATDYENLIHHVQKVVKEKFDVELHREVRI IGEYPKSE >gi|312979640|gb|ACRM01000025.1| GENE 6 4326 - 4640 178 104 aa, chain + ## HITS:1 COG:SA0692 KEGG:ns NR:ns ## COG: SA0692 COG4357 # Protein_GI_number: 15926414 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 104 1 104 104 139 72.0 2e-33 MPKVYGSLVDNETRCIHYHTLLDIIAIKFKCCEKYYPCYQCHNEHESHNIQRWSAEEFHK KAILCGVCQNELSIHEYMMTETCPSCQAHFNSRCKFHYHLYFEI >gi|312979640|gb|ACRM01000025.1| GENE 7 4869 - 5903 1341 344 aa, chain - ## HITS:1 COG:SA0691 KEGG:ns NR:ns ## COG: SA0691 COG4607 # Protein_GI_number: 15926413 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 1 339 1 341 342 382 64.0 1e-106 MKKTVLFLVLTLALVLSACSNNSSNKSNNENDSKDTVSIKNSFSASGNDESSNEGKKISN TVKVPKNPKNAVILDYGALDVLKEMGVADKVKGLPKGENNESLPSFLSEFKKDKYINTGN LKEINFNKIAEAKPDVIYISSRAATQKNLDEFKKAAPKAKVVYVGASEDHYIKDMKKNTE NLGKIYNKEDKAKDMNTKLDQKISDMKKQTKDLDKSVMYLLVNEGELSTFGPGGRFGDLV FNTLGFKPADKHVKISPHGQNINNEYISNHNPDIILAMDRGSVVGGKSTAKQVLKNDVIK DVKAVKNNNVYELDPKLWYFASGSTTTTVKQIDELEKVIDKTKK >gi|312979640|gb|ACRM01000025.1| GENE 8 6010 - 6780 250 256 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 1 225 1 228 245 100 28 1e-20 MIQIRNLDKKIQSKSILKDINVDIQKGKLTSLIGPNGAGKSTLLSAVSRLFEYENGTINI ENKLIDDYKSDELAKKLSILKQTNHTDMNITVEQLVNFGRFPYSKGRMKKEDHEKVAYAI DLLHLREIKDRNIKTLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHSVQIMQTLRT LCRNLNKTIVIVLHDINFASCYSDYIVALKKGEIIKSGPKDSVIETNVLSDLYEMDVHVE EIRGQRICLYYDEVIF >gi|312979640|gb|ACRM01000025.1| GENE 9 6777 - 7736 944 319 aa, chain - ## HITS:1 COG:SA0689 KEGG:ns NR:ns ## COG: SA0689 COG4605 # Protein_GI_number: 15926411 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Staphylococcus aureus N315 # 6 317 5 316 318 322 70.0 6e-88 MQISANKKILILFLFTICMAAFYLLVGLDFEIFQYQFESRIRKLVLILLVGGSISTAVVI FQSITANRLLTPSIMGLDSVYLFIKVLPVFLLGTQASVVTNTYLNFLLTLVVMVLFSLVL FQGMFKLGHFSVYFILLVGVVLGTFFRSITGFIQLIMNPDDFLTVQSAMFASFDASNSKL VLISSILLIILIVIAFILRPYLDVLLLGKDQSINLGVSYEKMTKLLLILVALLVSISTAL VGPVTFLGLLTVNLAHEFMKTYEHKYILPATILISWISLFIAQWIIENMFKATTEFSLII DLVGGIYFIYLLIKRRNED >gi|312979640|gb|ACRM01000025.1| GENE 10 7726 - 8694 889 322 aa, chain - ## HITS:1 COG:SA0688 KEGG:ns NR:ns ## COG: SA0688 COG4606 # Protein_GI_number: 15926410 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type enterochelin transport system, permease component # Organism: Staphylococcus aureus N315 # 1 321 1 321 323 421 79.0 1e-117 MKFLFKGYTLLIILVILSILSLFIGVSQLSITDLFHLSDNQKNILFSSRIPRTISILLSG SSLALAGLVMQQMMQNKFVSPTTAGTMEWAKLGILLSLIFFPKGHILIKLTFAVALSLGG TFLFVKLINFIKVKEVIFVPLLGIMIGGIVSSFTTFIALRTNALQSINNWLNGNFAVITS GRYEILYLAIPLLIIAYIFANHFTIAGMGKDFSHNLGVKYEQIINIALLITATLTALVVV TVGTLPFLGLIVPNIISMYRGDHLKNALPHTLMLGSIFVLFSDIIGRLIVYPYEINIGLT IGVFGTIIFLVLLMKGRNNYAN >gi|312979640|gb|ACRM01000025.1| GENE 11 8879 - 9847 1212 322 aa, chain - ## HITS:1 COG:SA0687 KEGG:ns NR:ns ## COG: SA0687 COG0208 # Protein_GI_number: 15926409 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, beta subunit # Organism: Staphylococcus aureus N315 # 1 322 1 322 323 563 89.0 1e-160 MKAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLTEDEKNTFKRALAGLTGL DTHQADDGMPLIMLHTTDLRKKAVYSFMQMMEQIHAKSYSHIFTTLLPSSETNYLLDTWV IEEPHLKYKSDKIISNYHKLWGKEASIFDQYMARVSSVFLETFLFYSGFYYPLYLAGQGK MTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSENEKQKADKEMYKLLEELYKNEVSYT HMLYDDIGLTEDVLNYVQYNGNKALSNLGFEPYFEEKEFNPIIENALDTSTKNHDFFSVK GDGYTLALNVEALQDEDFIFED >gi|312979640|gb|ACRM01000025.1| GENE 12 9961 - 12066 2368 701 aa, chain - ## HITS:1 COG:SA0686 KEGG:ns NR:ns ## COG: SA0686 COG0209 # Protein_GI_number: 15926408 # Func_class: F Nucleotide transport and metabolism # Function: Ribonucleotide reductase, alpha subunit # Organism: Staphylococcus aureus N315 # 1 701 18 718 718 1254 90.0 0 MKIMDEKKYNHIELNNEVTKRKDNGFFNLEKDQEALNVYLEEISDKTIYFDSEIERLHYL VDNHFYFNVFKKYSEEDLIEIIEFAKSINFEFASYMSASKFYKDYALKTNDKSKYLEDYN QHVAIVALYLADGNKEQAKQFILAMIEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSL NSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKALEGGFSYADQ LGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFY MFAPHTVKQEYGVTLDDIDIEKYYDELVANPNVLKKKKDAREMLNMIAQTQLQSGYPYLM FKDNANKVHANSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNV METGKFRDSVHTGMDALTVVSDEANIQNAPGVKKANNELHSVGLGVMNLHGYLAKNKIGY ESEEAKDFANIFFMMMNYYSIERSMEIAKERGEAYQDFDKSDYASGKYFDFYTSQEFVPQ FEKVKELFANMQIPTSEDWKSLQQQVQEYGLYHAYRLAIAPTQSISYVQNATSSVMPIVD QIERRTYGNAETFYPMPFLSPETMWYYKSAFNTDQMKLIDLISTIQTHVDQGISTILYVN SEISTRELSRLYVYAHHKGLKSLYYTRNKLLSVEECTSCAI >gi|312979640|gb|ACRM01000025.1| GENE 13 12029 - 12427 520 132 aa, chain - ## HITS:1 COG:SA0685 KEGG:ns NR:ns ## COG: SA0685 COG1780 # Protein_GI_number: 15926407 # Func_class: F Nucleotide transport and metabolism # Function: Protein involved in ribonucleotide reduction # Organism: Staphylococcus aureus N315 # 1 132 1 132 132 207 75.0 4e-54 MKVVYFSFSGNVRRFIKRSEIKNVLEINKDNCKDSIEEPYILVTGTIGFGEVPKEVQSFL EVNHAYIRAVAASGNRNWGQNFAKAGRTISETYHVPLLMKFEVQGTNKDVIEFRDKVGHF NEDYGREKVQSY >gi|312979640|gb|ACRM01000025.1| GENE 14 13165 - 14031 1032 288 aa, chain + ## HITS:1 COG:SA0684 KEGG:ns NR:ns ## COG: SA0684 COG0697 # Protein_GI_number: 15926406 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; R General function prediction only # Function: Permeases of the drug/metabolite transporter (DMT) superfamily # Organism: Staphylococcus aureus N315 # 1 283 1 283 288 405 83.0 1e-113 MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIIKYRQPIL GKMSSQPLLMTRSTLGLIGVLLNIYAIDHMVLSDADTLMKLNPFWTILLSLIFLKENIKR YQIIAMLIAIFGMLFIVKPEFSSTMFSSLAGLFSGIFAASAYTCVRALSKREAPYTIVFY FSLFSVIVLIPFSIATYEPMTKLQIIYLLGAGLSAAVGQIGITLAYSFAPAKDISIFTYA SILFTALFGFILFGETPDFYAFIGYIIIIGASYFMFEKARRQSNTSNN >gi|312979640|gb|ACRM01000025.1| GENE 15 14042 - 14542 488 166 aa, chain + ## HITS:1 COG:SA0683 KEGG:ns NR:ns ## COG: SA0683 COG0780 # Protein_GI_number: 15926405 # Func_class: R General function prediction only # Function: Enzyme related to GTP cyclohydrolase I # Organism: Staphylococcus aureus N315 # 1 166 1 166 166 312 91.0 2e-85 MTQGRNKEELQDITLLGNQNNKYEFDYTPQVLETFDNKHQGRDYFVKFNCPEFTSLCPIT GQPDFATIYISYIPNIKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIDLMDPHYIEV WGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDMYPEKIDNR >gi|312979640|gb|ACRM01000025.1| GENE 16 14826 - 16331 1776 501 aa, chain + ## HITS:1 COG:SA0682 KEGG:ns NR:ns ## COG: SA0682 COG3104 # Protein_GI_number: 15926404 # Func_class: E Amino acid transport and metabolism # Function: Dipeptide/tripeptide permease # Organism: Staphylococcus aureus N315 # 1 500 1 500 501 774 81.0 0 MATNNSHEQTIQSIPQKGFFGHPRGLGVLFFVEFWERFSYYGMRAMLIFYMYFAIHQNGL GIDKTTAMSIMSVYGALIYMSSIPGAWIADRITGTRGATLLGAVLIIIGHICLSLPFALF GLFSSMFFIIIGSGLMKPNISNIVGRLYPENDTRIDAGFVIFYMSVNLGALISPIILQHF VDIRNFHGGFLLAAIGMALGLVWYLLFNRKNLGSVGMKPTNPLSKEEKRKYGMIIGIIVA IVIVVLLVTYYTHTLSFDLISNTVLVLGVALPIIYFTTMLRSKDVTDGERSRVKAFIPLF ILGMLFWSIQEQGSNVLNIYGLERSDMQLNLFGWTTRFGEALFQSINPLFILLFAPVISM IWLKMGKKQPSLAIKFSIGTLLAGLSYILIGLVGLGYGHTQFSVNWVILSYVICVIGELC LSPTGNSAAVKLAPKAFNAQMMSVWLLTNASAQAINGTLVKLIKPLGQTNYFIFLGTVAI VITLIILVFSPKITKAMKGIH >gi|312979640|gb|ACRM01000025.1| GENE 17 16460 - 17383 966 307 aa, chain + ## HITS:1 COG:SA0681 KEGG:ns NR:ns ## COG: SA0681 COG1597 # Protein_GI_number: 15926403 # Func_class: I Lipid transport and metabolism; R General function prediction only # Function: Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase # Organism: Staphylococcus aureus N315 # 1 304 1 304 305 445 71.0 1e-125 MEQQYNHGVLFYHEHSGLKDIYDGLGEVAKSLTQLCKHLSIQLSENEGNIERYCKEIKDH TYSNDIDIVFILGGDGTVNELINGVMKYDLNLPIGIIPGGTFNDFTKTLNLNPDFKKASE QLLSSHVESYDVMKVNDNYVLNFVGLGLMVQNAENVQEGRKDIFGKLSYVGSTVKTLMNP DHFDYTMTVDDKEYKGNTSMLVIANGPNIGGSRIPLTDLSPQDGKLNSFIFEQQSFSILN DIFKKRDSMNWNEITEGINHIPGSHITLRTEPTMKVDIDGEINLETPITIDVLPKAINIL TFSNDEK >gi|312979640|gb|ACRM01000025.1| GENE 18 17446 - 17982 620 178 aa, chain - ## HITS:1 COG:SA0680 KEGG:ns NR:ns ## COG: SA0680 COG4502 # Protein_GI_number: 15926402 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 177 1 177 180 293 79.0 1e-79 MARKSIAIDMDEVLADTLGAIIEAVNIETKLGITMESLNGHKLNHVIPEHDGLVRDILRA PEFFRHLKVIPHAQEAVEKLNEHYDVYIATAAMDVPTSFHDKYEWLLEYFPFLDPQHFIF CGRKNIVKTDYLIDDNPRQLQIFEGEPIIFTAAHNINETRFKRVNGWKDVEAMFLNNN >gi|312979640|gb|ACRM01000025.1| GENE 19 18077 - 19132 1321 351 aa, chain - ## HITS:1 COG:SA0679 KEGG:ns NR:ns ## COG: SA0679 COG0079 # Protein_GI_number: 15926401 # Func_class: E Amino acid transport and metabolism # Function: Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase # Organism: Staphylococcus aureus N315 # 1 351 1 351 352 596 82.0 1e-170 MKKQLQQLSAYQPGLSPQALKEKFGIEGELYKLASNENLYGPSPRVKEAIEAHLDELFYY PETGSPSLRKAISKHLNVDESRILFGAGLDEVILMISRAVLTPGDKIVTSEATFGQYYHN AIVESAEVVKVPLKNGGFDLEGILKEVNSDTSLVWLCNPNNPTGTYFSHDELESFLERVP SHVPVLIDEAYFEFVTAEDYPDTLKLQERFDNAFLLRTFSKAYGLAGLRVGYVVATNEAI EKWNIIRPPFNVTRISEYAAIAALEDQDYLKEITKKNAKEREKFYDIEQSKHFLPSQTNF VFVVTDKPQALYNELLNVGCITRPFPNGVRITIGFEEQNNKMIEVLKQFNY >gi|312979640|gb|ACRM01000025.1| GENE 20 19268 - 20782 2199 504 aa, chain - ## HITS:1 COG:SA0678_2 KEGG:ns NR:ns ## COG: SA0678_2 COG1732 # Protein_GI_number: 15926400 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) # Organism: Staphylococcus aureus N315 # 236 502 2 268 270 431 82.0 1e-120 MNEFLTTLNDRRGELLRTIFEHIQISFIALFIAILIAVPLGIALTKTKRLSEVVMNIAAV LQTIPSLALLGLMIPIFGIGKVPAIIALVVYALLPILRNTYTGIKEVEPSLTEAAKGIGM KPMRRLTKVELPIAMPVIMAGIRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNTALI LIGAIPAALLAILFDFILRYMAKLSYKKLLITLGIILLIILLVIVVPLFGKKSATITMAG KLGSEPSIITNMYKILIEEETHDTVNVKSGMGKTSFLFNALKSDDIDGYLEFTGTVLGEL TKEDLKSKKEADVYHQAKASLEKKYDMTMLKPMKYNNTYALAVKRDFAKQYNLQSIGDLR KVQGQLKPGFTMEFKDRDDGYKAVAKKYNLNLSNIKQMEPKLRYTAVEKGDINLIDAYST DAELKQYDMVVLKDDKHVFPPYQGAPMFKEKFLKEHPEIKKALNQLSNKITDEQMQEMNY KVTVKNEDPYKVAKQYLEKEGLAH >gi|312979640|gb|ACRM01000025.1| GENE 21 20786 - 21742 1159 318 aa, chain - ## HITS:1 COG:SA0677 KEGG:ns NR:ns ## COG: SA0677 COG1125 # Protein_GI_number: 15926399 # Func_class: E Amino acid transport and metabolism # Function: ABC-type proline/glycine betaine transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 313 1 317 325 460 72.0 1e-129 MIEFKNVTKRYGTNVAVDDVSFKINEGEFFILIGPSGCGKTTTLKMINRLIPLSEGYIYF KDKPVSDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKDKDIHRRVDELLDM VRLDPNTYRDRKPDELSGGQRQRVGVVRALAADPPVILMDEPFSALDPISREKLQDDLLE LQTKIKKTIIFVTHDIQEAMKLGDRICLLNDGRVEQIDTPEGFQEHPRNQFVREFMGDHL HKDINNSKISDLNLTRTLTEYDEKQGYPIIKDSMKLQDIYEILAKHEAVIVENNHALTQS LLRREDVFDYLSKNDKEG >gi|312979640|gb|ACRM01000025.1| GENE 22 21932 - 23710 1687 592 aa, chain - ## HITS:1 COG:SA0676 KEGG:ns NR:ns ## COG: SA0676 COG0514 # Protein_GI_number: 15926398 # Func_class: L Replication, recombination and repair # Function: Superfamily II DNA helicase # Organism: Staphylococcus aureus N315 # 1 592 2 593 593 979 81.0 0 MEATLSHYFGYDTFRPGQKEIISKILNHHNVLGVLPTGGGKSICYQVPGLMLGGTTIVIS PLISLMKDQVDQLKAMGIEAAYLNSSLNKKQQSEIENKLITEGIQFLYVAPERFESNYFL KLLSQIDINLIAFDEAHCISKWGHDFRPSYQSVINKVFTLPQDFTIVALTATATAEVQQD IMEKLNIRKEDEIKTSTKRRNLIFKVNPTYQRQKFVIEYAKAHKDQAGIIYCSTRKQVEE LQESLESINIASVIYHAGLTNKEREEAQNDFVYDRIKVVIATNAFGMGIDKSNVRYVIHY NMPGDLESYYQEAGRAGRDGLKSECILLFSERDKGLHEYFITVSQADDDYKDKMGEKLTK MIQYTKTKKCLEATIVHYFEPNARLEECGQCSNCIQQNKTYDMTNEAKMIISCIARMRQQ ENYHVIIQVLRGELSDYIKYNHYHQLTTHGLMKDYTTSELSHLIDELRFKGFLNEYNEIL TCDESVKELLNNDVTVYTTPFKHKSKEKVFINTIEGVDRALYSELVEVRRQLSEKLNIAP VSIFSDYTLEEFAKRKPESKQEMIAIDGVGSYKLKHYCPKFLETIQSYKTNI >gi|312979640|gb|ACRM01000025.1| GENE 23 23724 - 25604 2208 626 aa, chain - ## HITS:1 COG:SA0675 KEGG:ns NR:ns ## COG: SA0675 COG0488 # Protein_GI_number: 15926397 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Staphylococcus aureus N315 # 1 626 1 624 625 911 80.0 0 MEAYKIEQLNKSYADKVIFDDLNLSISEHEKIGLVGINGTGKSTLLKVIGGLDEDFSADI THPNQYRIRYSSQKQHLNGDMTVFQAVLSSDTDTLRIIKTYEEAVTIYTEHQNDANFKKM MEAQELMDQHHAWDYNAEIKTILSKLGINNTTKKVKELSGGQQKRVVLAKTLIEQPDLLL LDEPTNHLDFESINWLINYVKQYPHTVLFVTHDRYFLNEIATRIVELDRGKLKSYPGNYE DYIAMRAENEVIEQKQQEKQKALYKQELAWMRTGAKARTTKQQARINRFNDLETEVQSHH QKDKGQLNLAYSRLGKQVFELDHLTKKIQNKILFKDVTEIIQSGQRIGIVGPNGAGKTTM LNILNQDDTDYSGELKVGQTVKIAYFKQTEETLDRDIRMIDYLREESEVAKEKDGTSVSV TQLLERFLFPSATHGKKIYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILE DYISTFGGAVVTVSHDRYFLNKVAQEYWYIHDGQLERIIGTFEDYEAYKKEKDRQDILEK QAQQPKTKSNVRKKTGLSYKEKREYEALMERIETTEHRLEQIDTEMVEASADYAKIKELN EEKEHLEQSYDVDITRWSELEEIKEQ >gi|312979640|gb|ACRM01000025.1| GENE 24 25716 - 26534 1296 272 aa, chain + ## HITS:1 COG:lin0435 KEGG:ns NR:ns ## COG: lin0435 COG0428 # Protein_GI_number: 16799512 # Func_class: P Inorganic ion transport and metabolism # Function: Predicted divalent heavy-metal cations transporter # Organism: Listeria innocua # 1 272 1 269 269 270 57.0 3e-72 MIDFFENLPPYLQALIAGIITWLLTALGAASVFIFKTVNKKILTSMQGFAAGIMIAASFW SLLQPSIDYGTNGHLPAWLPAAIGFILGGVFIRGLDAVIPHIHQKIGDKSQYREGVKTSL SKNALLVLAITLHNIPEGLSIGVAFGGIATGNGQATFFGALGLAIGIGIQNIPEGAALSM PIRAAGATRFKAFNYGQASAIVEPIFATIGAIAIIFITPVLPYALAFAAGAMIFVVVEEL IPDSQSGNNTDLATLSLMLGFVIMMILDVSLG >gi|312979640|gb|ACRM01000025.1| GENE 25 26945 - 28762 2026 605 aa, chain - ## HITS:1 COG:SA0674 KEGG:ns NR:ns ## COG: SA0674 COG1368 # Protein_GI_number: 15926396 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily # Organism: Staphylococcus aureus N315 # 1 604 1 604 646 1016 86.0 0 MSLHKRKISLFAFFLMTVFTVTLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLIALILSI FLFFKGKKAYWFIFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQASNVESMGGAVSASF KWYDFVYFLDTIVYLFILIFKRSWLDKRVFSKKFVPVVMAASIALFFLNLAFAETDRPEL LTRTFDHKYLVKYLGPYNFTVYDGVKTIQNNQQKALASEDDLTRVLNYTKQKNTEPNPEY YGIAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSTGNDDFRYYPNFFHQTGQGKT SDSEFTMDNSLYGLPQGSAYSLKGDNTYQSLPAILDQKEGYTSDVMHGDYKTFWNRDQIY KHFGIDKFYDATYYDMSDENVVNLGLKDKPFFKASAEYQSKMKQPFYSHLITLTNHYPFT LNSEDASIDKPNTGDSTVDGYIQTAHYLDQALEQYINDLKTKGLYDDSVIMIYGDHYGIS ENHNNAMEKLLGEQITPAKFTDLNRTGFWLKIPGKNGTVDETYAGQVDVMPTILHLVGID SKNYLMLGTDMLSKDHNDVIPFRNGDFITKDYKFVNGKVYSNKNNELITTPPKDLEKIRN RWKKI >gi|312979640|gb|ACRM01000025.1| GENE 26 29169 - 30173 1107 334 aa, chain - ## HITS:1 COG:SA0673 KEGG:ns NR:ns ## COG: SA0673 COG1984 # Protein_GI_number: 15926395 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 2 # Organism: Staphylococcus aureus N315 # 1 334 1 334 334 540 77.0 1e-153 MSIIIEKPGLFSTFQDFGRQGYEYEGVIPGGALDTLGHEIANRLVANDKNEATLEMTHIM AKIRFTEPTLIALTGHHFEACTENMKIKPYKLYLVEKGEVLSFKETSTTSRVYLAIGGGF KLDSWLNSTSTDLNIGVGGFQGRTIQEGDEIEMKRDYTSRHRKLFENLAHQRTTSWGIDG YALSFNYVSDVFHVIANKGTNDFDTDTQQTFVHGEYKVTNKSNRVGMLLEGPSIKAYYED MPEYQPVKKGTIQVKRDGTPIILLNDHYTIGSYPQIGTIASYHLTKLAQKPQGSRLKFQF IDIETAEKNTVKFSNWTNQLFHGIEFRMQLEMLK >gi|312979640|gb|ACRM01000025.1| GENE 27 30173 - 30877 761 234 aa, chain - ## HITS:1 COG:SA0672 KEGG:ns NR:ns ## COG: SA0672 COG2049 # Protein_GI_number: 15926394 # Func_class: E Amino acid transport and metabolism # Function: Allophanate hydrolase subunit 1 # Organism: Staphylococcus aureus N315 # 1 234 1 231 236 309 62.0 3e-84 MKIYSQGDQAIIIDIEQEVAEDVTKNLIAVRTHLLNKDLPFITDIVPTESSMMICYDARD MIKHYNISSPFQYMKALVNSIQIELEHIENKQTVCHFHNIPVVYGDQFGPDLEALLKYYR LSKEEFIQLHSKSHYFVSMMGYSPGFPYLTGMNEKLYVNHTSQKKKRVPAGSVIIEGKKC GIVTTDTYNDWLVIGYTPIKLFSPERDHFNLLKLGDNVLFHPKNPNDTELGDFK >gi|312979640|gb|ACRM01000025.1| GENE 28 30919 - 31125 164 68 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475304|ref|ZP_04060028.1| ## NR: gi|228475304|ref|ZP_04060028.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 68 1 68 68 67 100.0 2e-10 MTLLWLILIVLLNSLSKYIINRYLKHNLIMLPRIVGTMTVLFQFVLVYLLIQSIMPYATH LLNLFYHQ >gi|312979640|gb|ACRM01000025.1| GENE 29 31085 - 31171 63 28 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIDIVKFNLVNNGEGYDIIMVNTYRITQ >gi|312979640|gb|ACRM01000025.1| GENE 30 31179 - 31787 547 202 aa, chain - ## HITS:1 COG:SA0670 KEGG:ns NR:ns ## COG: SA0670 COG0115 # Protein_GI_number: 15926392 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Staphylococcus aureus N315 # 1 200 1 200 202 196 49.0 3e-50 MKLFETMQLNHGHIPRLNYHTRRLCHSCSQLGFQFSENAWYSYIENLKQNYNDRLYRLKV EIDKDGQFTHVIQPLSSKDIFTARFKKSNSDYPQKFIINKTTERAYLTHNHETDLILLYD DSGKILEFDIGNIMIKENGNYYTPRYNKDFLRGCMRESLLENHKLKVKDYTKDELMIKLE NEEVEVYLLNSLREVAQVSIYI >gi|312979640|gb|ACRM01000025.1| GENE 31 31788 - 32930 962 380 aa, chain - ## HITS:1 COG:SA0669 KEGG:ns NR:ns ## COG: SA0669 COG0147 # Protein_GI_number: 15926391 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component I # Organism: Staphylococcus aureus N315 # 1 380 1 383 383 431 60.0 1e-121 MNITFNYRYYTNEDDYIDYQLRFDQYISKSIAYSLEEVGEVIQFAEEQQTKGHYVALYLT YESAPFFNNQLETYHLIEKEVYAAAYAFNQPLNSDNNKDNIQYHSVHHFQFQESDEQMRR KIIKIQEAITEGDTYQVNYTTRLSSKVHYPISMLYTYLTHNNNGGYTALLDTEEVKVASI SPELFFQKGTFNDKANVIVSKPMKGTMPRGKTSVEDQLNYEKLMYSHKDRAENVMIVDLL RNDMSRISKTGTIEVYKLFFIETYQTVYQMTSMVTGQLEDAISLHSILTAMFPCGSITGA PKQSTMTYIKHLETSPRYIYCGTIGLLLPDDKMIFNIPIRTVEYRNNMALYGVGAGITID SVPLNEIQEFRDKTKILEEL >gi|312979640|gb|ACRM01000025.1| GENE 32 32914 - 33507 549 197 aa, chain - ## HITS:1 COG:SA0668 KEGG:ns NR:ns ## COG: SA0668 COG0512 # Protein_GI_number: 15926390 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Anthranilate/para-aminobenzoate synthases component II # Organism: Staphylococcus aureus N315 # 1 190 1 190 197 235 60.0 3e-62 MIIVIDNNDSFTYNLIDYIKIETSHCVEVLKVTEVTVALLEELTIEAIVISPGPGKPSDY PILKSVLDRYASSVPILGICLGFQLIYEYYGGEIIHGPKPVHGHTTPIIHTGKGLFKHLP QNFNVMRYHSLIANRQQLPSQLNTTATNNEGIMMAFEHDTLPIFAVQYHPESILSEYGHQ QIQYFIEKVGKIHEYYV >gi|312979640|gb|ACRM01000025.1| GENE 33 33840 - 34517 680 225 aa, chain + ## HITS:1 COG:SA0667 KEGG:ns NR:ns ## COG: SA0667 COG0603 # Protein_GI_number: 15926389 # Func_class: R General function prediction only # Function: Predicted PP-loop superfamily ATPase # Organism: Staphylococcus aureus N315 # 4 221 3 220 222 412 86.0 1e-115 MPNSVLNSEKAIVVFSGGQDSTTCLFYAKRHFKEVELVTFNYGQRHNTEIEVASKIAKDQ GLKHHILDMSLLSQLTPNALTKHDMTIETGEDGIPNTFVPARNLLFLSFAGALAYQVNAK HIITGVCETDFSGYPDCRDSFIKSMNVTLSLSMDRDFVIHTPLMWLDKAQTWELSDELGV LNYVRHNTLTCYNGIIGDGCGKCPACKLRQRGLHQYLEQKGDASL >gi|312979640|gb|ACRM01000025.1| GENE 34 34514 - 34933 466 139 aa, chain + ## HITS:1 COG:SA0666 KEGG:ns NR:ns ## COG: SA0666 COG0720 # Protein_GI_number: 15926388 # Func_class: H Coenzyme transport and metabolism # Function: 6-pyruvoyl-tetrahydropterin synthase # Organism: Staphylococcus aureus N315 # 1 137 1 137 139 194 67.0 4e-50 MIQQVYPTVNHPYTFELNKDFNFSAAHFIPSEDAGKCMRTHGHTYFVNLTIVGDALDHNG FLINFSELKRLVHDQFDHYLLNELPQFKDKSPSTEIVAQTIFEIVQAHLNEYDNKPKCVQ VYLRETPSSYVVYRPKEIK >gi|312979640|gb|ACRM01000025.1| GENE 35 34933 - 35649 689 238 aa, chain + ## HITS:1 COG:SA0665 KEGG:ns NR:ns ## COG: SA0665 COG0602 # Protein_GI_number: 15926387 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Organic radical activating enzymes # Organism: Staphylococcus aureus N315 # 3 238 2 237 237 418 82.0 1e-117 MPSKIPVLEIFGPTIQGEGRVIGRKTMFVRTAGCDYRCSWCDSAFTWDGSAKDDIELLTA QDIYDRLKEIGGNQFDHVTISGGNPALIKGIQDLVDLFEEKNIFTALETQGSKFQPWMRQ INDLTISPKPPSSNMVPNLEILDSVIEQCIPSTLNLKVVVFDKEDYQFAKMIHHRYRNIP FYLQVGNPYLDDDVEYHTEKLLGRYETLVDTVMNSSDMNHVYVLPQLHTLLWSNKKGV >gi|312979640|gb|ACRM01000025.1| GENE 36 35758 - 36361 308 201 aa, chain + ## HITS:1 COG:no KEGG:SH2189 NR:ns ## KEGG: SH2189 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 201 1 201 203 189 62.0 7e-47 MIIYVFINIAITICVLGFDLYRHHFKQLTFNSVLLSIVINAIINSVVIEKFNFITFASII FFLSWTILQYYLNRKHIYLMISEYKSLAFIFAIMISCSLFITFESSDQSVYMSIPYLAPA IFIIGLSIDFISTFSKNEMNHLKFLSKLQHPIMIGHTIIIISIILLTLLTSFWYIFIIIY ALFDIYLLWQLKHNNFENDLK Prediction of potential genes in microbial genomes Time: Sun May 29 09:36:20 2011 Seq name: gi|312979639|gb|ACRM01000026.1| Staphylococcus hominis subsp. hominis C80 cont1.26, whole genome shotgun sequence Length of sequence - 35338 bp Number of predicted genes - 36, with homology - 34 Number of transcription units - 24, operones - 9 average op.length - 2.3 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 20 - 1003 1042 ## COG0463 Glycosyltransferases involved in cell wall biogenesis - Prom 1053 - 1112 7.5 2 2 Tu 1 1/0.625 - CDS 1130 - 1969 1032 ## COG0656 Aldo/keto reductases, related to diketogulonate reductase - Prom 2006 - 2065 3.6 - Term 2032 - 2079 10.3 3 3 Tu 1 . - CDS 2082 - 3452 1365 ## COG1253 Hemolysins and related proteins containing CBS domains - Prom 3478 - 3537 2.5 - Term 4115 - 4155 6.1 4 4 Op 1 19/0.000 - CDS 4174 - 6144 2765 ## COG1299 Phosphotransferase system, fructose-specific IIC component 5 4 Op 2 10/0.000 - CDS 6150 - 7070 1045 ## COG1105 Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) 6 4 Op 3 1/0.625 - CDS 7073 - 7828 757 ## COG1349 Transcriptional regulators of sugar metabolism - Prom 7849 - 7908 5.5 7 5 Tu 1 . - CDS 7977 - 8456 486 ## COG2606 Uncharacterized conserved protein - Prom 8483 - 8542 9.3 - Term 8509 - 8559 -0.8 8 6 Op 1 . - CDS 8587 - 9063 492 ## SH2198 hypothetical protein - Prom 9144 - 9203 7.2 9 6 Op 2 . - CDS 9222 - 10385 1226 ## COG0477 Permeases of the major facilitator superfamily - Prom 10547 - 10606 13.0 + Prom 10448 - 10507 9.9 10 7 Tu 1 . + CDS 10614 - 10700 71 ## + Prom 11164 - 11223 7.1 11 8 Tu 1 . + CDS 11254 - 11871 429 ## COG4330 Predicted membrane protein + Term 12052 - 12098 1.4 12 9 Tu 1 . - CDS 12001 - 13374 1489 ## COG0415 Deoxyribodipyrimidine photolyase - Prom 13437 - 13496 7.7 - Term 13422 - 13482 9.4 13 10 Op 1 . - CDS 13515 - 13814 438 ## SH2205 hypothetical protein - Prom 13835 - 13894 8.5 14 10 Op 2 . - CDS 13937 - 14860 868 ## COG0523 Putative GTPases (G3E family) - Prom 14965 - 15024 8.7 + Prom 14835 - 14894 12.2 15 11 Tu 1 . + CDS 15083 - 15520 399 ## COG1846 Transcriptional regulators + Term 15590 - 15645 7.1 - Term 15578 - 15633 3.3 16 12 Op 1 14/0.000 - CDS 15636 - 17303 209 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 17 12 Op 2 . - CDS 17287 - 18918 1366 ## COG4988 ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components 18 13 Tu 1 . + CDS 19218 - 20087 1030 ## COG1968 Uncharacterized bacitracin resistance protein + Term 20094 - 20134 0.1 + Prom 20106 - 20165 7.0 19 14 Op 1 . + CDS 20214 - 20705 637 ## SH2211 hypothetical protein 20 14 Op 2 1/0.625 + CDS 20705 - 21166 498 ## COG1671 Uncharacterized protein conserved in bacteria 21 14 Op 3 . + CDS 21163 - 21729 859 ## COG1611 Predicted Rossmann fold nucleotide-binding protein + Term 21748 - 21794 14.4 - Term 21732 - 21784 18.1 22 15 Op 1 . - CDS 21955 - 22500 189 ## PROTEIN SUPPORTED gi|227379366|ref|ZP_03862824.1| acetyltransferase, ribosomal protein N-acetylase - Prom 22521 - 22580 7.5 - Term 22525 - 22573 3.7 23 15 Op 2 . - CDS 22601 - 22897 450 ## SH2215 hypothetical protein - Prom 22933 - 22992 5.4 24 16 Tu 1 . - CDS 23052 - 23429 447 ## SH2216 hypothetical protein - Prom 23455 - 23514 7.7 25 17 Tu 1 . - CDS 23814 - 23882 113 ## - Prom 24006 - 24065 7.0 + Prom 23934 - 23993 10.2 26 18 Tu 1 . + CDS 24020 - 24709 666 ## SH2218 hypothetical protein - Term 24773 - 24836 6.0 27 19 Op 1 9/0.000 - CDS 24895 - 26115 1007 ## COG0477 Permeases of the major facilitator superfamily 28 19 Op 2 1/0.625 - CDS 26162 - 27016 631 ## COG0583 Transcriptional regulator - Prom 27048 - 27107 4.9 29 19 Op 3 . - CDS 27109 - 27666 495 ## COG2306 Uncharacterized conserved protein - Prom 27847 - 27906 7.5 + Prom 27730 - 27789 7.6 30 20 Tu 1 . + CDS 27882 - 28985 1243 ## COG0620 Methionine synthase II (cobalamin-independent) + Term 29042 - 29101 11.3 - Term 29030 - 29087 10.9 31 21 Op 1 . - CDS 29094 - 29585 454 ## COG3542 Uncharacterized conserved protein 32 21 Op 2 . - CDS 29585 - 30301 1027 ## COG0217 Uncharacterized conserved protein - Prom 30343 - 30402 8.3 - Term 30386 - 30430 7.6 33 22 Op 1 3/0.000 - CDS 30446 - 30805 353 ## COG1846 Transcriptional regulators - Prom 30849 - 30908 5.5 34 22 Op 2 1/0.625 - CDS 30955 - 33093 1174 ## COG2207 AraC-type DNA-binding domain-containing proteins - Prom 33208 - 33267 11.2 35 23 Tu 1 . - CDS 33395 - 34063 770 ## COG0670 Integral membrane protein, interacts with FtsH - Prom 34127 - 34186 7.6 + Prom 34383 - 34442 10.4 36 24 Tu 1 . + CDS 34508 - 35302 878 ## COG3942 Surface antigen Predicted protein(s) >gi|312979639|gb|ACRM01000026.1| GENE 1 20 - 1003 1042 327 aa, chain - ## HITS:1 COG:SA0659 KEGG:ns NR:ns ## COG: SA0659 COG0463 # Protein_GI_number: 15926381 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 1 326 1 325 327 483 71.0 1e-136 MKIRVIIPCFNEGKVVKKTYDRLTEILTENSKTRRYYYDLLFIDDGSKDNTIEHIQNLAE YDEHVKYISFSRNFGKEAAMIAGFQHSVNVDAVVMIDGDLQHPPEFIPKMIEIYQQGFDQ VVAKRDRSGENIARKTMSKLYYKLINSFVEDIKFSDGVGDFRLLSQRAVKSIVSLNEYNR FSKGLFEWIGYNTKIFTYKNVEREAGESKWTFTKLLNYGIDGLISFNNKPLRAMIYLGMF IFGLSIIYIIYLLIGILMNGINHPGYFTTIAAVLLLGGIQLMSIGVVGEYIGRIYYEVKQ RPKYIVEASNLKTPIEKVVAEKEKIYQ >gi|312979639|gb|ACRM01000026.1| GENE 2 1130 - 1969 1032 279 aa, chain - ## HITS:1 COG:SA0658 KEGG:ns NR:ns ## COG: SA0658 COG0656 # Protein_GI_number: 15926380 # Func_class: R General function prediction only # Function: Aldo/keto reductases, related to diketogulonate reductase # Organism: Staphylococcus aureus N315 # 1 279 1 279 279 440 72.0 1e-123 MVNDTQVLNNGYPMPKVGLGVYKMEDNEMETAVQIALEAGYRAFDTAYFYGNEQALGKAL NNSDIVREDVFITSKLWNDYQGYDNTLEYFNKSLENLGLDYLDLYLIHWPCEKDGLYIES YKALEKLYNEGKIKAIGVCNFKPHHLETLMKETTIVPQINQIEVHPYFNQQDVQDYCDKH DITVTAWMPLMRNRGLLDDSVITKLAEQYDKTPAQIVLRWHLAHDRIIIPKSKTPSRIRE NYDIFDFNLELTEIAEIDSLNRNARQGKDPDDVAIGDLK >gi|312979639|gb|ACRM01000026.1| GENE 3 2082 - 3452 1365 456 aa, chain - ## HITS:1 COG:SA0657 KEGG:ns NR:ns ## COG: SA0657 COG1253 # Protein_GI_number: 15926379 # Func_class: R General function prediction only # Function: Hemolysins and related proteins containing CBS domains # Organism: Staphylococcus aureus N315 # 1 449 1 449 449 740 84.0 0 METVTIINLVIFFLLIALTTVFVGSEFALVKVRSTRIEQLADEGNGSAKIVKKMIANLDY YLSACQLGITVTSLGLGWLGEPTFEKLLHPLFNLLHLPSAVTTTISFVISFIVVTYLHVV LGELAPKSIAIQHTEKLALTYARPLYYFGNVMKPLIWLMNGSARVIIRMLGVDPDAQADA MSEEEIKIIINNSYNGGEINQTELNYMQNIFSFDERHAKDIMVPRTQMVTLNEPFNVDEL LDTIKEHQFTRYPITEDGDKDHIKGFINVKEFLTEYASGRTIKISNYIHELPMISETTRI SDALVSMQREHVHISLIIDEYGGTAGILTMEDILEEIVGEIRDEFDDDEINDIVKLEEGI YQINGRVLLDDLHEKFDITFEDSEDIDTIGGWLQAHNTNLQVEDYIDTKYDRWIVSEMDN HQLVWVVLKYQFNETRPVISDEEEEENHDHKHESDE >gi|312979639|gb|ACRM01000026.1| GENE 4 4174 - 6144 2765 656 aa, chain - ## HITS:1 COG:SA0655_3 KEGG:ns NR:ns ## COG: SA0655_3 COG1299 # Protein_GI_number: 15926377 # Func_class: G Carbohydrate transport and metabolism # Function: Phosphotransferase system, fructose-specific IIC component # Organism: Staphylococcus aureus N315 # 311 656 1 346 346 546 86.0 1e-155 MRITELLTKETIAMDLSASDKNGVIDELVNQLDSAGKLSDIAQFKEAIHNRESQSTTGIG EGIAIPHAKVAAVTSPAIAFGKSKEGVDYQSLDGQPAHLFFMIAAPEGGAQTHLDALAKL SGILMDDTVRENLLQANSKEEILRIIDDADDEATKEEEKEAQKQEDEAQATTGASANDNA NEPYVLAVTACPTGIAHTYMARDALKKQAEKMGVKIKVETNGSSGIKNHLTQQDIERATG IIVAADVHVETDRFDGKNVVEVPVADGIKRPEELINTALDTSRKPFKAHGGQKNTDKDSN DEKLSPGKAFYKHLMNGVSNMLPLVIAGGILMAIVFLFGANSFDPKSPEHNAFAEQLWNI GNKSAFALIIPILAGFISRSIADKPGFAAGLVGGMLAISGGSGFIGGIIAGFLAGYLTQG IKYITRNLPQAVEGLKPTLIYPLLSVTITGLLMIYVFNPPAAWLNNLLLNGLNSLSGSNI MLLGLVIGAMMAIDMGGPFNKAAYVFATAALTEGNAAPITAAMVGGMIPPLAIATAMFIF KRKFTKEQRGSIVPNYVMGLSFITEGAIPFAAADPLRVIPSMMVGSGVAGAIALGLGSRI NAPHGGIIVIAATDFSHIIQTIIALIIGTLVSAVLYGLLKPKLTEQEIKASESMDE >gi|312979639|gb|ACRM01000026.1| GENE 5 6150 - 7070 1045 306 aa, chain - ## HITS:1 COG:SA0654 KEGG:ns NR:ns ## COG: SA0654 COG1105 # Protein_GI_number: 15926376 # Func_class: G Carbohydrate transport and metabolism # Function: Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) # Organism: Staphylococcus aureus N315 # 1 306 1 306 306 427 74.0 1e-119 MIYTVTFNPSIDYIMFTDGFELKGLNRARETYKFAGGKGINVSRVLKTLDVSSTALGFAG GFPGEFISSILEQSDINTEFIKVNEDTRINVKLKSGDETEINAPGPNVTSEQFEALLNQI RHTSKEDTVIVAGSVPKSIPSDAYAQIAKITQETGAKLVVDAERDLVNTVLEYHPLFIKP NKDELEEMFDVTIKSDQDVVKYGREIVKNGAQSVIISLGGDGAIYVDETRSIKAQNPKGE VVNTVGSGDSTVAGMVAGLELGLSLEEAFCQAVASGTATAFNDDLALREDIEKIKSQVTI SVLDGE >gi|312979639|gb|ACRM01000026.1| GENE 6 7073 - 7828 757 251 aa, chain - ## HITS:1 COG:SA0653 KEGG:ns NR:ns ## COG: SA0653 COG1349 # Protein_GI_number: 15926375 # Func_class: K Transcription; G Carbohydrate transport and metabolism # Function: Transcriptional regulators of sugar metabolism # Organism: Staphylococcus aureus N315 # 1 251 2 251 253 300 62.0 2e-81 MISEKRQSLILQELKKKDFLSLQELIERTGCSASTIRRDLSKLQQLGRLQRVHGGATLNS HRNQEPILSEKLSTNLKEKREIGRKAAQLIEDNDYIFMDAGSSTIEMIPFIKAQDIVVVT NGLSHVERLLHRGIKTLMIGGEVKATTFATVGASALEVLRRYCFDKAFIGMNGLDLNHGL TTPDEKEALIKERAIHQATTSYVLLDHSKLDETYFAHVSTKACHVEYIVSEQLRHHNRYN EYKEKYHFLGG >gi|312979639|gb|ACRM01000026.1| GENE 7 7977 - 8456 486 159 aa, chain - ## HITS:1 COG:SA0652 KEGG:ns NR:ns ## COG: SA0652 COG2606 # Protein_GI_number: 15926374 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 2 156 3 157 160 198 63.0 3e-51 MKHKKTNAMRMLDRAKINYSVNTFEIDEEHLDGETIAELVHANVKDVYKTLVLENANHDH FVCVIPVSETLDLKEAAHVIGEKKLNLMPMDDLKKVTGYIRGGCSPIGMKHSFPTIIDES ALSRDKINVSGGQRGMQIILEPNDLIAVTQAQTARITQH >gi|312979639|gb|ACRM01000026.1| GENE 8 8587 - 9063 492 158 aa, chain - ## HITS:1 COG:no KEGG:SH2198 NR:ns ## KEGG: SH2198 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 158 1 159 161 126 51.0 3e-28 MNLKNILLSVVAIILSICLAFLLFIATNQNALAKVHRTISTFSKVGSIVETKNILNINSN HTAEASEKNQTQHKADIHQNQNVNYRLTEKVQEKYLYSTEECKTIVENYMQQNYKQPVKL EGLNETNQAITFEAYPENKKAEDITINKVGKVEIISAN >gi|312979639|gb|ACRM01000026.1| GENE 9 9222 - 10385 1226 387 aa, chain - ## HITS:1 COG:SA0650 KEGG:ns NR:ns ## COG: SA0650 COG0477 # Protein_GI_number: 15926372 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 378 1 378 388 499 73.0 1e-141 MKKQLFTLYFNIFLIFVGIGLVIPVLPVYLKDLGLKGSDLGILVAIFSLSQMIISPFGGS LADKLGKKLIICLGLVFFTISEFLFAMSHSFILLIVSRILGGFSAGMVMPGVTGMIADIS IAKDKAKNFGYMSAIINSGFILGPGIGGFLAEISHRLPFYFAGALGVIAFVISVILIRQP QNTAESHHIHFETKELSKIQWGVFITPIILTFVLAFGLSSFETLFSLYTSSKANYAPGDI SIAIVGGGVVGAVFQIFFFDKFMKYTTELTFITWALLYSVIVIFSLIIAHSYWSIMLISF IVFIGFDLIRPALTNYYSNIAGNRQGFAGGLNSTFTSMGNFVGPLVAGLLFDVNIEFPLY MSIIVMLFGVVIIFIEKKLKLNRSRCD >gi|312979639|gb|ACRM01000026.1| GENE 10 10614 - 10700 71 28 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MPKNGQHSLLVLEHGEDIIKEVTHFAQH >gi|312979639|gb|ACRM01000026.1| GENE 11 11254 - 11871 429 205 aa, chain + ## HITS:1 COG:SA0648 KEGG:ns NR:ns ## COG: SA0648 COG4330 # Protein_GI_number: 15926370 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 1 203 2 204 206 169 58.0 3e-42 MTSRYIARIYFIILFVISLFETRVFNFVSLNLFLAYIPLELCFLLDLFKPRKKFEWPIFI IFALIFILLVPNTFYMVTDLIHLNQFTFDFYVQLNLIEWLYFTFLLLSVFFAIYCMALIF VHLSHFTSKLWLNRCLLITLMFLNGLGIFMGRFLRFHTVHLITRPFTIIIEVISALNGSS LIFISLMMLLQFVILLFIKGIRMAH >gi|312979639|gb|ACRM01000026.1| GENE 12 12001 - 13374 1489 457 aa, chain - ## HITS:1 COG:SA0646 KEGG:ns NR:ns ## COG: SA0646 COG0415 # Protein_GI_number: 15926368 # Func_class: L Replication, recombination and repair # Function: Deoxyribodipyrimidine photolyase # Organism: Staphylococcus aureus N315 # 1 455 1 454 457 527 58.0 1e-149 MNIGVILNRVFRINNNPLFEYINQQKDAFDKCYLIIPKETFEEKGTDKKANYYYGTLEKF LYKLKEHHIEPYVIDYSELGMFCTEHDIKEIVMAGDIMSYHQERYDIRHLKQAFKNHDIP VITINVNHYFKPSNTMNQQGQPYKVFTSFYKAHRSKLRQHSPYQYQLSDIANKCSQSQQT ITNDYHHDGQSEDQALNNWKDYLNHSIQNYKKDREYLPEILTSQLSIVLAYGLIDIKQII TDLLERYEENESNYESFIREVMFREFYYVLMAQYPHIAHEAFNEKYRTIQWSYNKEEFNR WCEGQTGFPIIDAAMNELNETGFMHNRMRMVVSQFLTKDLFIDWAWGEDYFRKKLIDYDA ASNIHGWQWSASIGTDAVPYFRMFNPIRQSERFDKDALYIKKYIPIFDHVPAKLLHHPFQ HQTQLVKKGIQLGKDYPEPIVDHKVAREHVMTIFKNI >gi|312979639|gb|ACRM01000026.1| GENE 13 13515 - 13814 438 99 aa, chain - ## HITS:1 COG:no KEGG:SH2205 NR:ns ## KEGG: SH2205 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 3 99 2 98 98 114 83.0 1e-24 MNHNEDKRTKQIRFEFKWITIPYLIFAIIILLLNIFFTNIKITMALFGLFFGYNLGILFI AFINKYKRTLILTLILTILSAATFFTLLYVFGLNREIFG >gi|312979639|gb|ACRM01000026.1| GENE 14 13937 - 14860 868 307 aa, chain - ## HITS:1 COG:SA0642 KEGG:ns NR:ns ## COG: SA0642 COG0523 # Protein_GI_number: 15926364 # Func_class: R General function prediction only # Function: Putative GTPases (G3E family) # Organism: Staphylococcus aureus N315 # 1 307 1 308 308 326 57.0 3e-89 MINNKKQKISITIISGFLGSGKTTLLNNYISQLLKKDEKITIIMNEFGSFDVDSLLIEED ITVKSLINGCVCCDLNNDLVLQLQSLIKEGESQHILIESTGIAHPLEVFAACQDPTIVND VEIPKIIGLVDALRFNNRMKYTVETNELMKEQIKYSDIIILNKMDLVTQVELENIKKQLV SINNKATIYVTTYSKLDDVVVKNKAADINRHVHVHHHNVQSMKYTFSSPIDRQLFYQFIM RLPDEVFRLKGFVKFKDQSDSTYEFQFSMGLPTYGITDREVPLTIVIIGEMLDTTRLKNQ LEMIQFT >gi|312979639|gb|ACRM01000026.1| GENE 15 15083 - 15520 399 145 aa, chain + ## HITS:1 COG:SA0641 KEGG:ns NR:ns ## COG: SA0641 COG1846 # Protein_GI_number: 15926363 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 145 1 145 147 228 88.0 3e-60 MSEQHNLKEQLCFSLYNAQRQVNRYYSNKVFKKYNLTYPQFLVLSILWEESPVNVKKVVT ELALDTGTVSPLLKRMENVDLIKRERSEIDQREVFIHLTEKSENIKPELSDASQKVAIAS SLSNDEVHELNRLLGKIITAFTENK >gi|312979639|gb|ACRM01000026.1| GENE 16 15636 - 17303 209 555 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 342 549 14 242 245 85 29 5e-16 MKPHIKFHLDKDLFLAILVSITGSLIALTMFFLSGYMVTQSALGMPIYALMILVVSVKLF GFLRAMTRYVERLLSHRTTFTMLRNIRVQFVKQLFPRVPNIYRKFRSSDLISRMVNKVES LQNIYLRVYYPPFVIGLTALIAAVALIYFSIAHAILIVISMLFYLWIIPWLSAKRVRILK QQVTTHEQKMLGEFYDYKAGYQELITFNQQDAYKKKVVKSLEYYDRLQAKENRFLTFYDY ILNLISIITIFLSLALAVVQIEHGYLDVIYVTSMILMILTLFEQAIPMSNFAYYKADTDQ ALTDINEVFHSSITTPKLTVQTKQEPVFSISNLNFKYFNQETLVLNDINLTIHKGEKVAI IGPSGSGKSTLMQLLCGLYEIEEGRVELYGQSITQINENDRYNEINALLQSQQIFDGTVR ENLLSNQKDENLIDVLNMLNLSYLNLNTQLTLDGTSLSGGEIQRLSLARLFLKSSNIWLL DEPTTALDEDNTTNVMKEINKQAETLVVATHDLDLLPYFDTIIVMVEGEVVEYGDYVSLS QNKGYLNRMIHINKL >gi|312979639|gb|ACRM01000026.1| GENE 17 17287 - 18918 1366 543 aa, chain - ## HITS:1 COG:SA0639 KEGG:ns NR:ns ## COG: SA0639 COG4988 # Protein_GI_number: 15926361 # Func_class: C Energy production and conversion; O Posttranslational modification, protein turnover, chaperones # Function: ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components # Organism: Staphylococcus aureus N315 # 2 534 6 538 543 602 59.0 1e-172 MSLVFKYKLFPIFMGMTSVLLAICVVIQNIGIAEFLNQVLYHKVSAIYPLLFTILIVLIL RVTFNMLNQRLGDILAYKVKHDLRQKIVTSKSKASIGVQTNILTEVIDGITPFFNNYLPQ VFKSMFIPFVIIIVMCFIHLNTAIIMAVTAPFIPLFYIIFGLKTRDESKEQMTYLNQFSQ RFLNIAKGLITLRLFRRTTETENRIYKESTRFRDLTMKILKSAFLSGLMLEFISMLGIGL IALEATLSLVVFHHINFKIAVIAIILAPEFYNAIKDLGQAFHTGKQSEGASDIIFDFLNN VEESNINTPIINQNQQNQIYFDKVSYQYPNTTLYALKDITFSINQGEKIAIVGPSGAGKS TLANLIQQMITPTKGRIIFNSEVTDIGMLNQRPYIFSASVKDNITMFNEVSDEKILQTLE TVGLKEKILSLNKGIHTVIGEGGEMLSGGQMRRIELCRVLLLRPSILIFDEPTTGLDIET ERVVQQTLEHNFKHATTITIAHRNSTIRRETRRLYVKEGHLIKDDNRISTQLNKVVNKDE TTY >gi|312979639|gb|ACRM01000026.1| GENE 18 19218 - 20087 1030 289 aa, chain + ## HITS:1 COG:SA0638 KEGG:ns NR:ns ## COG: SA0638 COG1968 # Protein_GI_number: 15926360 # Func_class: V Defense mechanisms # Function: Uncharacterized bacitracin resistance protein # Organism: Staphylococcus aureus N315 # 1 289 1 291 291 452 86.0 1e-127 MIIIEFIKALILGIVEGLTEFAPVSSTGHMILVDDMWLQSSQFLGSHSAFTFKIVIQLGS VFAAAWVFRERYFEMLHIGKYKHVAHSEGMRSKPRRLNLLHVLVGMIPAGILGVLFDDFI EAHLFSVPTVMIGLFIGAIYMIIADKYSTKVKHPQTVDQINYFQAFVIGISQAVAMWPGF SRSGSTISTGVLMKLNHKSASDFTFIMAVPIMLAASALSLLKNYQYIDLAHVPFYIIGFL AAFIVGLIAIKTFLHLINKVKLVPFAIYRIVLVIFIAILYFGFGIGKGI >gi|312979639|gb|ACRM01000026.1| GENE 19 20214 - 20705 637 163 aa, chain + ## HITS:1 COG:no KEGG:SH2211 NR:ns ## KEGG: SH2211 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 6 153 1 148 224 110 70.0 2e-23 MGGTSMDKKQVIKTAINVLPIFIVPLVVERKKIKSHPDVQKASHATSHATHTVANKASSV KDYFGDKKQEFDNKRELKKIAKENDPKYIKKKGSKLAKKNHKQSSKLEKKLQKNIDKRHK EEEKIQKHNEKQRIKEMKKYDNYNADSIITQDKALHSEKVTNK >gi|312979639|gb|ACRM01000026.1| GENE 20 20705 - 21166 498 153 aa, chain + ## HITS:1 COG:SA0636 KEGG:ns NR:ns ## COG: SA0636 COG1671 # Protein_GI_number: 15926358 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 150 1 150 152 199 66.0 2e-51 MTTIFVDGDACPVVNEIIDLTAETGFFVTILRSFSHFSHSHYPSHVNILYVDDGPDAVDY KIIQLVTTSDIVITQDYGLASLLLKKARIIMHHKGFIYNENNIDILLQQRYNNAQIRKQG GRHKGPSPFSKEDRQYFCDVFQTLLNQLMEDTK >gi|312979639|gb|ACRM01000026.1| GENE 21 21163 - 21729 859 188 aa, chain + ## HITS:1 COG:SA0635 KEGG:ns NR:ns ## COG: SA0635 COG1611 # Protein_GI_number: 15926357 # Func_class: R General function prediction only # Function: Predicted Rossmann fold nucleotide-binding protein # Organism: Staphylococcus aureus N315 # 1 188 1 188 188 324 82.0 7e-89 MKRIAVYCGASKGNNPIYVKEAYQLGKYMAEQGYELIFGAGSVGIMGAIQDGVLDYGGHA IGVMPKMLDEREITSQKVSELILVDSMHERKEKMTELADAFVMAPGGAGSLEEFFEMYSW AQIGIHQKPIGIFNLNGFFNPLQTLIDHMIEEGFIDKKYKALAPLYDTKEALIDGLLNYK PLGVRTYD >gi|312979639|gb|ACRM01000026.1| GENE 22 21955 - 22500 189 181 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|227379366|ref|ZP_03862824.1| acetyltransferase, ribosomal protein N-acetylase [Kribbella flavida DSM 17836] # 1 161 1 161 185 77 32 1e-13 MVVYIETERLRLRDWEEKDLLSFQKMNANPQVRRYFPSLLSYRRSELDMQQMDDILKEKG IGLFAVELKETGAWLGYIGLNYLPKDSKYPFENLPIYEIGWRLIPEVWGNGIATEGAMAV LEYAKEKGIEEVFSLTAEGNLASRKVMEKIGMSLFDYFELPELSKYHPLKRHVRYQKKLN I >gi|312979639|gb|ACRM01000026.1| GENE 23 22601 - 22897 450 98 aa, chain - ## HITS:1 COG:no KEGG:SH2215 NR:ns ## KEGG: SH2215 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 97 1 97 98 160 82.0 1e-38 MHEHDFQILEGRDITLPELGKEIENITGRTVTHSTGDIKRVVAHLPNFESESDTFVATFK LNHRNDYIDATFVAPKNQRNKLKEIPVHIELISYISKN >gi|312979639|gb|ACRM01000026.1| GENE 24 23052 - 23429 447 125 aa, chain - ## HITS:1 COG:no KEGG:SH2216 NR:ns ## KEGG: SH2216 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 121 1 121 162 67 54.0 1e-10 MKKWIVLLLLATLILSACGKSEEKVSLENDIKQLEKENKDLKNEKNNLEKQKEKLNAQRE KLQKEVDSSVAKESVKQETEKSKKDNSKQTNLSNESSSSTEERSSDSNSEQSNNNTSSSS STKSN >gi|312979639|gb|ACRM01000026.1| GENE 25 23814 - 23882 113 22 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTNYQLIENIARIHEYYLEKVH >gi|312979639|gb|ACRM01000026.1| GENE 26 24020 - 24709 666 229 aa, chain + ## HITS:1 COG:no KEGG:SH2218 NR:ns ## KEGG: SH2218 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 229 1 229 229 298 80.0 1e-79 MKSTATLARENNVKSMRLNNTDREIFENYMTYIRADLRVNPHDSELMLNRILKELLAAEK DGTLALEFFDHDPKAHAKKQLKSLPNETIKNIVKSIFRNFIFLVGIFFFFKGFIGFFIPD NHNEVYLYTFPITLFIGLAIIFLFILVVFKTVQLQCFNNSHWIWWFNYCIIALLVVALFY VFFIPQSFLAYGPSIRINNWAFIIISLIITPIAFYIEHHFVDEDSNTVL >gi|312979639|gb|ACRM01000026.1| GENE 27 24895 - 26115 1007 406 aa, chain - ## HITS:1 COG:SA0628 KEGG:ns NR:ns ## COG: SA0628 COG0477 # Protein_GI_number: 15926350 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Staphylococcus aureus N315 # 1 403 1 401 404 511 76.0 1e-145 MFSALLHIKNYKLFLINMMLLGMGIAITVPYFVLFATKELGMSTNQFGVLLALAAVSQFT VNAIVARFSDTHHLNRKILIICALFMGALSFSIYFYIHHIWLFIIVYAIFQGLFAPAMPQ LYASARESINASSSRNNAKFANTVLRSMFSFGFLFGPLIGAYLIQFMGYAGLFGGTVIIL LFTLLLQIFFYKDLNLTINDQVKDTASIEITAPNMLKDKTLFIPFIAFILLHIGQWMYTM NMPLFVTEYLKEREGYVGTLASLCAGLEVPFMVILGILASKLSTRTLLILGAISGGLFYF SIGIFENIYMMMIGQVFLAFYLAILLGLGISYFQDILPDFPGYASTLFANAMVIGQLCGN LLGGVMSHWVGLENVFYVSALSIFIGMILILFTKDQKFTSSSMNIQ >gi|312979639|gb|ACRM01000026.1| GENE 28 26162 - 27016 631 284 aa, chain - ## HITS:1 COG:SA0627 KEGG:ns NR:ns ## COG: SA0627 COG0583 # Protein_GI_number: 15926349 # Func_class: K Transcription # Function: Transcriptional regulator # Organism: Staphylococcus aureus N315 # 63 284 1 222 226 367 80.0 1e-101 MKIEDYQLLITLDETKTLRKAAEILYISQPAVTQRLKTIEHAFGVEIFIRTKKQLITTTE GAMIIEHARDMLNREKMFFDKIQAHIGEVNGTISIGCSSLIGQTILPRVLSLYNTQFPNV EIQVQVGSTEQIRSNHRDYHLLITRGNKVMNLKNIHLFDDEHYFIYPKERHEDVSKLPFI EFQADPIYINQINHWYSEKFGQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNIDHH VFEFEKVNIDGLPLIRSTYMSYDSSILQLPQVDAFVSLMLNFTK >gi|312979639|gb|ACRM01000026.1| GENE 29 27109 - 27666 495 185 aa, chain - ## HITS:1 COG:SA0626 KEGG:ns NR:ns ## COG: SA0626 COG2306 # Protein_GI_number: 15926348 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 184 1 183 214 259 75.0 2e-69 MKIKYIDKRHWRRLIERDYIEVKVNNNRFKGIIGLVTMKKVREPLEVTVVDQNVVVVDNN YKWLQILPEKKRYSITAMFDDKGNPLEYYFDINIKNITQKGNARTLDLFLDVLVLPSTGE YELVDEHDLELALKNGQITKKQFHEAYIIAHQLMIEIDDNFAEIHHRIMHCYKKMIGKLN KHKKA >gi|312979639|gb|ACRM01000026.1| GENE 30 27882 - 28985 1243 367 aa, chain + ## HITS:1 COG:lin0838 KEGG:ns NR:ns ## COG: lin0838 COG0620 # Protein_GI_number: 16799912 # Func_class: E Amino acid transport and metabolism # Function: Methionine synthase II (cobalamin-independent) # Organism: Listeria innocua # 3 364 4 366 367 365 50.0 1e-100 MTVRPFRADHVGSLLRPKRLKEARFKFNNNELSLDELTRIEDKEIERIIEKQIEIGLHSI TDGEFRRSWWHFDFLENINGVEGYTPDHGLEFEGVETRAHNVRIVDKVSFNPNHPHFEHF KFLYKKVAGRATAKVSIPSPNQLFHPNILNETIYPNIEDFANDIAKVYHETLQAFYDLGA RYIQLDDVYWAGLTDGTQKVRGRQRSEDEKLKARDLAYKVINKAIEGLPNDLILTTHICR GNYKSTWAISGGYEAIAPYLFKENLNGFFLEYDDERSGDFEPLRFFNDNAYAVLGLITSK TGELENKETIKKRIKEAEQYVNIDHICISPQCGFASTEEGNALTEQEQWNKLAYVVELAN ELFGTAE >gi|312979639|gb|ACRM01000026.1| GENE 31 29094 - 29585 454 163 aa, chain - ## HITS:1 COG:sll1188 KEGG:ns NR:ns ## COG: sll1188 COG3542 # Protein_GI_number: 16329452 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Synechocystis # 1 155 1 160 164 122 39.0 4e-28 MKHTASFWIQSLDLESHPEGGYYKETIRPEGVKKDERASFSSILFLLKTDDISHFHRIDA DEVWYYHAGVSLEIHMLTEDGQYRSVLLGPNVDHGEVLQYVVPKGTIFASSVPHSEGYSL VGCMCQPAFEFKYFELFTQDELTEAYPQYRRMIQKYALKNIEY >gi|312979639|gb|ACRM01000026.1| GENE 32 29585 - 30301 1027 238 aa, chain - ## HITS:1 COG:BH3259 KEGG:ns NR:ns ## COG: BH3259 COG0217 # Protein_GI_number: 15615821 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Bacillus halodurans # 1 237 1 237 239 350 77.0 1e-96 MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPDPESNQALRLVLERAKTYSVP NHIIDRAIDKAKGGGDENYDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGN MGVSGSVAYMFDHTATFGVEGKSADDVLETLMEQDVDVRDVIEEDGLTIVYAEPDQFAQV QEALRQSGVEDFKIAEFEMLPQTDIELSADDQATLEKLIDALEDLEDVQNVFHNVDLK >gi|312979639|gb|ACRM01000026.1| GENE 33 30446 - 30805 353 119 aa, chain - ## HITS:1 COG:SA0623 KEGG:ns NR:ns ## COG: SA0623 COG1846 # Protein_GI_number: 15926345 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 118 23 140 141 127 65.0 6e-30 MSNDELNRLLKIYKQYKALSEYIEKEYKLTLNDLALLKLAYEYTADDQILMQTFLKVAIE ELELSRTKLLVSIRRLIEKEKLSKVRSTEDERKIFIYMNKSNIDQFNALFNDVERFLDN >gi|312979639|gb|ACRM01000026.1| GENE 34 30955 - 33093 1174 712 aa, chain - ## HITS:1 COG:SA0622 KEGG:ns NR:ns ## COG: SA0622 COG2207 # Protein_GI_number: 15926344 # Func_class: K Transcription # Function: AraC-type DNA-binding domain-containing proteins # Organism: Staphylococcus aureus N315 # 1 712 1 715 716 535 42.0 1e-152 MSNGYFHVLTKHEYQMTRCQDGIILLFPIEGSLEIQHFAKKVTINNDIYVINNKDIFSIN NNEKTLMIYIASDWFKEEGFNFFDYKYSINLVKSINAIKKALLQITMNHINHKSVSEDNK YIVDIVQIIGRQGSVEIDIANDQYNYAYYGELSEVLDYINENIEKKLTLKDVSSNLFTSK SNLSSQFTQLLNISFKTYVDTLKIANSFELLLKTDDTISLISEKVGFSNASSYSKTFKSY MGMTPNEYRSCNKYEKMIFMDYETHIDDSLQNIRDIILSQQYYYQKKTEHKIYLDAKLDT FIKPYQCVVQINTIEEIKLLFLEKYIDYLDESPSLMIYVRVDMKEIKEHFTVKELQRIFE YIIRKNLNISFKLEDLNLINFLEMTYENVLDYLEIHQVEVNVNHELGIVFDLEKIDLKAI YRMILKIQHKTNRFSFGLEISKLLNNPVLFKTLESQIKRVNFQFLFIDNSKLNQPYLIEG NNRLLVKNILHYQNIREILNHIDLENQRIIFLNVENHVFLNSEYNDLNSSAPLIVETNIK SAQHFDGIGFNFRQDSHQFNALHLFDEKGFKTILGTMMAHIMTLSQEPKYIKDHYIVIEK ENKFILFIYDWRVLESESRNANYEKTDIYVDFKHKTNKNHLIKIQQIDDYNGNINHIITE DIRNRYQWSKTFLKKVNRLLHPSFKIREHNFNKEALQIKLDYNGLYIIEIYK >gi|312979639|gb|ACRM01000026.1| GENE 35 33395 - 34063 770 222 aa, chain - ## HITS:1 COG:SA0621 KEGG:ns NR:ns ## COG: SA0621 COG0670 # Protein_GI_number: 15926343 # Func_class: R General function prediction only # Function: Integral membrane protein, interacts with FtsH # Organism: Staphylococcus aureus N315 # 29 221 21 213 214 235 71.0 4e-62 MSSSSNLVNHQHQSVRSKDNTRQNHAYRKVWLFFTYYWLIFGIGCYLGQYLPVEWRRPLS ITLFVIVLATLFIKRARKYGLIISHIYAIIIGLLSYATFSMYMQNLGAEVFYKNILLAII AFIVFGILGYFVIHDASSLGKYLFVTLIALIIASLVGLFIHNSIFHIVITMVSLVLFLLY TLFDFNRMKHGRFTSREMGFNLFLNLLNIIKDILNLANRFKN >gi|312979639|gb|ACRM01000026.1| GENE 36 34508 - 35302 878 264 aa, chain + ## HITS:1 COG:SA0620_2 KEGG:ns NR:ns ## COG: SA0620_2 COG3942 # Protein_GI_number: 15926342 # Func_class: R General function prediction only # Function: Surface antigen # Organism: Staphylococcus aureus N315 # 153 264 2 113 113 167 84.0 2e-41 MKKLAFTLSIASGAVAFFSHHAEASTQYTVQPGDSLWSIANKYNTPVDELKRNNHLNGNL IFPGQVLTINGSSTTTSSSLSSKSSTTYTVQSGDSLSRIANKYGTSVTNLMNANNFSNYL IYPGQVLKIPSSSSTTNSPSTTAAQSTGYTSPTFNHQNLYTAGQCTWYVFNRRAQAGSPI STYWSDAKYWTYNAASDGYIVNHTPTVGSIMQSTAGYYGHVAYVERVNPDGSILISEMNY TYGPYNTNTRVIPASLVSSYNYIH Prediction of potential genes in microbial genomes Time: Sun May 29 09:37:08 2011 Seq name: gi|312979638|gb|ACRM01000027.1| Staphylococcus hominis subsp. hominis C80 cont1.27, whole genome shotgun sequence Length of sequence - 78667 bp Number of predicted genes - 90, with homology - 85 Number of transcription units - 51, operones - 20 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 21/0.000 - CDS 25 - 1029 1221 ## COG0306 Phosphate/sulphate permeases 2 1 Op 2 1/0.778 - CDS 1044 - 1634 576 ## COG1392 Phosphate transport regulator (distant homolog of PhoU) - Prom 1745 - 1804 9.5 - Term 1710 - 1762 1.2 3 2 Op 1 36/0.000 - CDS 1923 - 3812 1712 ## COG0577 ABC-type antimicrobial peptide transport system, permease component 4 2 Op 2 4/0.000 - CDS 3802 - 4563 894 ## COG1136 ABC-type antimicrobial peptide transport system, ATPase component - Prom 4583 - 4642 6.3 - Term 4605 - 4643 3.2 5 2 Op 3 40/0.000 - CDS 4817 - 5857 1020 ## COG0642 Signal transduction histidine kinase 6 2 Op 4 2/0.222 - CDS 5850 - 6524 769 ## COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 7 2 Op 5 . - CDS 6539 - 7462 658 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 7573 - 7632 7.0 + Prom 7470 - 7529 11.1 8 3 Tu 1 . + CDS 7556 - 8062 194 ## PROTEIN SUPPORTED gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase + Term 8134 - 8180 5.3 - Term 8091 - 8129 7.1 9 4 Tu 1 . - CDS 8197 - 9264 1600 ## COG3949 Uncharacterized membrane protein - Prom 9428 - 9487 7.2 - Term 9458 - 9517 13.9 10 5 Op 1 . - CDS 9536 - 9976 413 ## SH2241 hypothetical protein - Prom 10094 - 10153 8.9 11 5 Op 2 . - CDS 10155 - 10535 440 ## COG3412 Uncharacterized protein conserved in bacteria - Prom 10604 - 10663 5.2 12 6 Tu 1 . - CDS 10755 - 11546 845 ## COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components - Prom 11666 - 11725 7.5 + Prom 11443 - 11502 7.6 13 7 Tu 1 . + CDS 11528 - 11704 83 ## - Term 11666 - 11726 11.4 14 8 Tu 1 . - CDS 11733 - 12566 843 ## COG1284 Uncharacterized conserved protein - Prom 12649 - 12708 8.6 - Term 12920 - 12969 3.1 15 9 Tu 1 . - CDS 13080 - 14312 1551 ## COG1972 Nucleoside permease - Prom 14414 - 14473 5.9 16 10 Op 1 . - CDS 14492 - 14575 58 ## 17 10 Op 2 . - CDS 14594 - 16765 2327 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 16829 - 16888 7.6 18 11 Tu 1 . - CDS 16920 - 18647 202 ## PROTEIN SUPPORTED gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 - Prom 18716 - 18775 7.0 - Term 18826 - 18882 1.0 19 12 Tu 1 1/0.778 - CDS 18941 - 19339 591 ## COG0615 Cytidylyltransferase - Prom 19383 - 19442 5.2 20 13 Op 1 5/0.000 - CDS 19445 - 20509 1180 ## COG0463 Glycosyltransferases involved in cell wall biogenesis 21 13 Op 2 2/0.222 - CDS 20506 - 21597 944 ## COG1887 Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC - Prom 21724 - 21783 8.1 - Term 21736 - 21781 5.2 22 14 Tu 1 . - CDS 21823 - 22635 897 ## COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component - Prom 22822 - 22881 8.9 + Prom 22866 - 22925 8.0 23 15 Tu 1 . + CDS 22950 - 23744 971 ## COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component + Term 23747 - 23801 0.5 24 16 Tu 1 . - CDS 23792 - 24550 647 ## COG1922 Teichoic acid biosynthesis proteins - Prom 24781 - 24840 11.8 + Prom 24473 - 24532 6.9 25 17 Tu 1 . + CDS 24687 - 25472 740 ## SH2261 hypothetical protein + Term 25495 - 25528 -0.8 - Term 25464 - 25508 6.0 26 18 Tu 1 . - CDS 25514 - 26161 509 ## COG1321 Mn-dependent transcriptional regulator - Prom 26224 - 26283 7.3 - Term 26284 - 26321 3.2 27 19 Tu 1 1/0.778 - CDS 26352 - 28391 2226 ## COG0025 NhaP-type Na+/H+ and K+/H+ antiporters - Prom 28444 - 28503 7.4 28 20 Op 1 16/0.000 - CDS 28585 - 29085 519 ## COG1320 Multisubunit Na+/H+ antiporter, MnhG subunit 29 20 Op 2 15/0.000 - CDS 29060 - 29362 321 ## COG2212 Multisubunit Na+/H+ antiporter, MnhF subunit 30 20 Op 3 12/0.000 - CDS 29359 - 29841 467 ## COG1863 Multisubunit Na+/H+ antiporter, MnhE subunit 31 20 Op 4 21/0.000 - CDS 29838 - 31337 1695 ## COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit 32 20 Op 5 16/0.000 - CDS 31327 - 31674 417 ## COG1006 Multisubunit Na+/H+ antiporter, MnhC subunit 33 20 Op 6 7/0.000 - CDS 31671 - 32096 425 ## COG2111 Multisubunit Na+/H+ antiporter, MnhB subunit 34 20 Op 7 1/0.778 - CDS 32083 - 34485 2278 ## COG1009 NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit 35 20 Op 8 . - CDS 34500 - 35057 589 ## COG0582 Integrase - Prom 35092 - 35151 5.4 + Prom 35087 - 35146 7.5 36 21 Op 1 . + CDS 35200 - 35406 301 ## SH2277 hypothetical protein 37 21 Op 2 . + CDS 35439 - 35660 335 ## SERP0279 hypothetical protein + Term 35723 - 35775 9.2 + Prom 35751 - 35810 11.0 38 22 Tu 1 . + CDS 35842 - 36768 997 ## COG3238 Uncharacterized protein conserved in bacteria + Term 36803 - 36842 4.6 + Prom 36831 - 36890 7.3 39 23 Tu 1 . + CDS 36916 - 37854 776 ## SH2280 hypothetical protein + Prom 37976 - 38035 12.3 40 24 Tu 1 . + CDS 38170 - 38544 546 ## COG1846 Transcriptional regulators + Term 38590 - 38628 8.6 - Term 38577 - 38616 5.0 41 25 Tu 1 . - CDS 38789 - 39604 923 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) - Prom 39657 - 39716 12.3 - Term 39706 - 39742 -0.5 42 26 Tu 1 . - CDS 39761 - 40066 285 ## SLGD_02211 hypothetical protein - Prom 40142 - 40201 4.3 43 27 Tu 1 . - CDS 40228 - 40479 224 ## SH2284 hypothetical protein - Prom 40575 - 40634 4.4 - Term 40564 - 40620 18.2 44 28 Tu 1 . - CDS 40686 - 41192 738 ## SH2285 hypothetical protein - Prom 41241 - 41300 9.0 - Term 41259 - 41300 1.8 45 29 Op 1 1/0.778 - CDS 41325 - 42119 971 ## COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) 46 29 Op 2 1/0.778 - CDS 42120 - 42824 802 ## COG1011 Predicted hydrolase (HAD superfamily) 47 29 Op 3 33/0.000 - CDS 42883 - 43839 773 ## COG0609 ABC-type Fe3+-siderophore transport system, permease component - Prom 43866 - 43925 9.5 - Term 43961 - 44002 4.3 48 29 Op 4 . - CDS 44030 - 44950 1036 ## COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component - Prom 44991 - 45050 11.8 - Term 45093 - 45143 1.2 49 30 Op 1 . - CDS 45154 - 45657 556 ## COG3152 Predicted membrane protein 50 30 Op 2 . - CDS 45733 - 46494 695 ## COG0789 Predicted transcriptional regulators - Prom 46515 - 46574 2.0 51 31 Tu 1 1/0.778 - CDS 46585 - 47232 609 ## COG2231 Uncharacterized protein related to Endonuclease III - Term 47243 - 47294 8.5 52 32 Op 1 4/0.000 - CDS 47312 - 48973 2150 ## COG0018 Arginyl-tRNA synthetase 53 32 Op 2 . - CDS 48970 - 49386 345 ## COG4506 Uncharacterized protein conserved in bacteria - Prom 49416 - 49475 7.7 - Term 49594 - 49640 4.5 54 33 Tu 1 . - CDS 49690 - 49830 154 ## gi|228475099|ref|ZP_04059826.1| hypothetical protein STAHO0001_1895 - Prom 49869 - 49928 5.8 55 34 Tu 1 . - CDS 50013 - 50150 61 ## - Prom 50188 - 50247 5.2 - Term 50308 - 50366 2.2 56 35 Op 1 . - CDS 50373 - 50879 683 ## SH2326 hypothetical protein 57 35 Op 2 1/0.778 - CDS 50952 - 52250 1315 ## COG1078 HD superfamily phosphohydrolases 58 35 Op 3 2/0.222 - CDS 52314 - 52790 529 ## COG0454 Histone acetyltransferase HPA2 and related acetyltransferases - Prom 52824 - 52883 6.3 59 35 Op 4 1/0.778 - CDS 52885 - 53421 771 ## COG0655 Multimeric flavodoxin WrbA - Prom 53498 - 53557 8.7 - Term 53501 - 53545 7.4 60 36 Tu 1 . - CDS 53570 - 54505 1377 ## COG0667 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) - Prom 54604 - 54663 6.6 + Prom 54568 - 54627 7.6 61 37 Op 1 1/0.778 + CDS 54661 - 55101 512 ## COG1959 Predicted transcriptional regulator 62 37 Op 2 . + CDS 55088 - 56410 399 ## PROTEIN SUPPORTED gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 + Term 56418 - 56463 8.5 - Term 56403 - 56454 15.3 63 38 Tu 1 . - CDS 56472 - 56846 444 ## SH2399 hypothetical protein - Prom 56874 - 56933 12.6 - Term 56922 - 56978 -0.9 64 39 Op 1 5/0.000 - CDS 56991 - 58067 1320 ## COG1577 Mevalonate kinase 65 39 Op 2 5/0.000 - CDS 58080 - 59063 1119 ## COG3407 Mevalonate pyrophosphate decarboxylase 66 39 Op 3 1/0.778 - CDS 59068 - 59991 1180 ## COG1577 Mevalonate kinase - Prom 60017 - 60076 5.7 - Term 60340 - 60391 -0.9 67 40 Op 1 1/0.778 - CDS 60404 - 61168 627 ## COG0095 Lipoate-protein ligase A 68 40 Op 2 . - CDS 61240 - 62229 1462 ## COG0280 Phosphotransacetylase - Prom 62336 - 62395 5.6 + Prom 62268 - 62327 7.0 69 41 Tu 1 . + CDS 62400 - 63149 1080 ## COG3253 Uncharacterized conserved protein + Term 63158 - 63210 10.2 + Prom 63410 - 63469 11.6 70 42 Op 1 12/0.000 + CDS 63542 - 64357 887 ## COG2966 Uncharacterized conserved protein 71 42 Op 2 . + CDS 64370 - 64822 605 ## COG3610 Uncharacterized conserved protein + Term 64826 - 64886 10.4 - Term 64814 - 64872 10.0 72 43 Op 1 1/0.778 - CDS 64879 - 66348 1612 ## COG0531 Amino acid transporters 73 43 Op 2 . - CDS 66419 - 66790 545 ## COG2363 Uncharacterized small membrane protein 74 43 Op 3 . - CDS 66821 - 67171 374 ## SH2410 hypothetical protein 75 43 Op 4 . - CDS 67172 - 67831 823 ## COG0692 Uracil DNA glycosylase - Prom 67959 - 68018 6.5 + Prom 67736 - 67795 6.0 76 44 Tu 1 . + CDS 67973 - 68803 1170 ## COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase + Term 68808 - 68850 5.2 77 45 Tu 1 . - CDS 69232 - 69384 75 ## - Prom 69417 - 69476 5.7 + Prom 69271 - 69330 5.9 78 46 Tu 1 . + CDS 69455 - 69643 195 ## SH2413 hypothetical protein 79 47 Op 1 . - CDS 70083 - 70346 283 ## SLGD_01665 hypothetical protein 80 47 Op 2 . - CDS 70336 - 70716 233 ## SH2416 hypothetical protein 81 47 Op 3 8/0.000 - CDS 70685 - 71830 1618 ## COG0183 Acetyl-CoA acetyltransferase 82 47 Op 4 . - CDS 71830 - 73212 928 ## COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II - Prom 73241 - 73300 10.0 - Term 73270 - 73325 13.1 83 48 Op 1 4/0.000 - CDS 73332 - 73880 749 ## COG0794 Predicted sugar phosphate isomerase involved in capsule formation 84 48 Op 2 . - CDS 73882 - 74514 1126 ## COG0269 3-hexulose-6-phosphate synthase and related proteins - Prom 74540 - 74599 5.0 + Prom 74484 - 74543 7.3 85 49 Op 1 . + CDS 74703 - 75062 525 ## SH2421 hypothetical protein 86 49 Op 2 1/0.778 + CDS 75076 - 75741 940 ## COG2120 Uncharacterized proteins, LmbE homologs 87 49 Op 3 . + CDS 75769 - 76647 1114 ## COG1469 Uncharacterized conserved protein + Term 76652 - 76707 12.3 - Term 76640 - 76695 12.3 88 50 Op 1 . - CDS 76700 - 77074 266 ## SSP0111 hypothetical protein - Prom 77130 - 77189 9.5 89 50 Op 2 . - CDS 77257 - 77439 66 ## SERP2398 accumulation associated protein - Prom 77554 - 77613 9.4 - Term 78057 - 78115 10.3 90 51 Tu 1 . - CDS 78124 - 78666 738 ## Predicted protein(s) >gi|312979638|gb|ACRM01000027.1| GENE 1 25 - 1029 1221 334 aa, chain - ## HITS:1 COG:SA0619 KEGG:ns NR:ns ## COG: SA0619 COG0306 # Protein_GI_number: 15926341 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate/sulphate permeases # Organism: Staphylococcus aureus N315 # 1 334 1 335 335 488 86.0 1e-138 MEYVLVITIAIVVFSLVFDFINGFHDTANAIATAVSTRALTPRTAIFLAAVMNFIGALTF TGVAGTITKDIVDPFKLQNGLVVVLAAIIAAIVWNLVTWLYGIPSSSSHALIGAIAGAAI AAQGFTVLHYQGFTKIIIVLIISPIIAFCVGFIMYTIVKIVFKNANLTRANRNFRFFQMF TAALQSFSHGTNDAQKSMGIITLALIVANLQDPTNVEPALWVKIACATAMGLGTAIGGWK IIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGV KWNTAQRMIITWIITLPISAILAAIIFWILNVFL >gi|312979638|gb|ACRM01000027.1| GENE 2 1044 - 1634 576 196 aa, chain - ## HITS:1 COG:SA0618 KEGG:ns NR:ns ## COG: SA0618 COG1392 # Protein_GI_number: 15926340 # Func_class: P Inorganic ion transport and metabolism # Function: Phosphate transport regulator (distant homolog of PhoU) # Organism: Staphylococcus aureus N315 # 1 196 10 205 205 328 94.0 3e-90 MVQLEEMVFNLDRAAVEFGKMDFNTHLDLKAYSDNIKTYESHGDELMHKVISDLNQTFIT PIEREDILSLCNAIDDVLDAMEETSGMFEMYSIEYTDEYMAEFVDNIQKAVAEMKLAVGL LVDKKLSHMRIHSINIKEFETNCDGILRQSIKHIFNSETDPITLIKIKDIYESLENIADK CQAVANNFETIIMKNS >gi|312979638|gb|ACRM01000027.1| GENE 3 1923 - 3812 1712 629 aa, chain - ## HITS:1 COG:SA0617 KEGG:ns NR:ns ## COG: SA0617 COG0577 # Protein_GI_number: 15926339 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, permease component # Organism: Staphylococcus aureus N315 # 1 629 5 633 633 642 59.0 0 MSFSYIIWRNFLRNIKHYAIYMFSLVISTVLYFSFITIKYVHHLHIHESLSIIREGSKIG SYFLFIIIVVFIMYTNILFIKRRSYELGLLQIIGLNKVSIIYMFMLEQLFIFLITAVLGM IIGIVGSKILLMIILKLLGIHTSVSLIFSVDAIIQTLFILIIAYILIILQAIIFLNKYSV TQLMESEEYIDETGKHITFGEIILGILGIVFILAGYYLSTRFVELLDDIVLPFIILFLTV IGAYFFFRSSVSLILKIIKSFKSGNVTVNDVIFTSSLMFRIRKNAFSLTIISIISAITVS VLCFAAISRGSLSKEILLESPYEVTTNNDTLSEKLKYQLEQQHIAYNYNYKQVVYTHLYK DHLFDVNVARPYSVTITSEDYFSNISLKKGQADLIIPEDVIPELTKHRPHGTAMIGTKRH HTKVQLQKVIHKVYFKESVDLGGPTLVLNNGDYQFIKQHVKNKDIISQHGFDLKYTKDIP KLEKTINHMNQNLKTRSQIASEISSLTGILLFVSSFLGIAFLIATGCIIYIKQIDETEDE LENYSILRKLGFTQKDMARGLKLKVAFNFGLPLAIALLHAYFAALVFMKFIGFTNQMSIF IVMIIYTIVYSMFAFIAYNHSKRTINHSI >gi|312979638|gb|ACRM01000027.1| GENE 4 3802 - 4563 894 253 aa, chain - ## HITS:1 COG:SA0616 KEGG:ns NR:ns ## COG: SA0616 COG1136 # Protein_GI_number: 15926338 # Func_class: V Defense mechanisms # Function: ABC-type antimicrobial peptide transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 253 1 253 253 360 73.0 2e-99 MTILQAKQIVKTYGTKQTIQEVLRGIDLNIETGEFVSIMGPSGSGKTTLLNVLSSIDYLS QGSVILNGKQLEKLSNRELSEIRKKDIGFIFQEYNLLHTLTVKENIMLPLSVLKLNKEEM NKRYRQITEALNIYDISDKYPSEISGGQRQRTSAARAFITYPKIIFADEPTGALDSKNTR DLLIRFEKINKIYDVTIIMVTHDPLAASFSNRVVMLKDGLIFTEIYQGQDNKQLFYEEIL RAQSILGGKIYEF >gi|312979638|gb|ACRM01000027.1| GENE 5 4817 - 5857 1020 346 aa, chain - ## HITS:1 COG:SA0615 KEGG:ns NR:ns ## COG: SA0615 COG0642 # Protein_GI_number: 15926337 # Func_class: T Signal transduction mechanisms # Function: Signal transduction histidine kinase # Organism: Staphylococcus aureus N315 # 1 340 1 340 346 442 64.0 1e-124 MSNVKWFWLFLKTRSNWIFWIIFLQFVFLGMAYIDYDMAIESVAYIVLLNIGLTCIFLVF TFLREVKLYQHFYNNKEIEEIKHKELAENPFQQEMVDYLYRKLLFHKERATEQQIHIQAS EQSLTEFVHDIKTPVTAMKLLIDQAEDMERKKALLYEWSRVNELLDKQLYLTRLESKNRD MYFEKVPLKRLVIEEIQLTRHISQVKGIGYELEFDTNPEVFTDVKWCRMMIRQILSNSLK YSQGKDIVIRSLAKKDHIALEITDYGRGISAKDLPRIFERGYTSTANRNETTSSGIGLYL VESVRHPLGIEVEVESTVGEGTTFILTFPIQNEVIERMSQEKLSLS >gi|312979638|gb|ACRM01000027.1| GENE 6 5850 - 6524 769 224 aa, chain - ## HITS:1 COG:SA0614 KEGG:ns NR:ns ## COG: SA0614 COG0745 # Protein_GI_number: 15926336 # Func_class: T Signal transduction mechanisms; K Transcription # Function: Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 361 83.0 1e-100 MQILLVEDDQTLFQQLKKELENWDFFVYGVNDFSNVMETYHNVQPEIVIMDVQLPKYDGF YWCRQIRQVSNVPILFLSSRDNPMDQVMSMELGADDYMQKPFHTNVLIAKLQAIYRRVYQ FGVEERRTLNWQDALVDLSKDSIQKGDKIIYLSKTEMIILEMLIQKQNQIVTRDTLITAL WDDEAFVSDNTLTVNVNRLRKKLSEIGMETEIETKVGKGYMAHE >gi|312979638|gb|ACRM01000027.1| GENE 7 6539 - 7462 658 307 aa, chain - ## HITS:1 COG:SA0613 KEGG:ns NR:ns ## COG: SA0613 COG0451 # Protein_GI_number: 15926335 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 307 1 307 307 359 54.0 4e-99 MKPNVLLAGGSGYIGKNISSAIENDANLFALSKYPNTKKEFNHNITWLKKDIYNYEDVKS AMSGVNIAVFYLDPNKNSAKLTQATARDLNLIAADNFARAAAQQGINKILYVRGSRFDNE TIQCLKNYGIPVETTETYIKRSHINVELQMSKYNDIRTALRMILPRKWSLEQLVAYFFKW LNDTRGTFLHTKYIENRYIIYARNECKPLLVMKKEVNDNRLITFNLVGGSIIKKRSKKQG KLEFRQIKGTRLVIVQLYDYIPKLLWPLYYFFQAPVQSLIMRGFEIDCRIRHFNGRMQSG EKMKYTK >gi|312979638|gb|ACRM01000027.1| GENE 8 7556 - 8062 194 168 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|228000081|ref|ZP_04047083.1| acetyltransferase, ribosomal protein N-acetylase [Brachyspira murdochii DSM 12563] # 5 163 4 162 166 79 30 6e-14 MAHIIREISIKDTEALTTLLTKIYDESDYTLYNPGEFNPSVSSISNLLERIITSPRNTIY VAEEDDQLVGCIFVTTEKYERTQHEAVITFGVTKLYQKKGIGLALINAVEAWALNHNIKR LQASVVPENTHAIMLLKGAGFNIEGELKNKLLINNQYFNKYIMAKLLL >gi|312979638|gb|ACRM01000027.1| GENE 9 8197 - 9264 1600 355 aa, chain - ## HITS:1 COG:SA0609 KEGG:ns NR:ns ## COG: SA0609 COG3949 # Protein_GI_number: 15926331 # Func_class: S Function unknown # Function: Uncharacterized membrane protein # Organism: Staphylococcus aureus N315 # 30 355 1 326 326 428 77.0 1e-120 MGLNKESIKIGFAYVGIVVGAGFSTGQEVMQFFTPYGLWSYIGVLISGLILGFIGRQVAK IGTAFEATNHESTLQYLFGEKFSKIFDYILVFFLFGIAVTMIAGSGATFEESFGIPTWLG ALIMTVIIYLTLLLDFNKIVRALGFVTPFLIVMVVLIAIYYLFAGSISISKVNSTVDHPS LFLGIIRGLMYGGLAFAVGFSTVVAIGGDASKRQVSGAGALFGGVVYTVLLALINFALQS EYPQIKNEQIPTLKLANEIHPWLGLVLTVIMLAVMYNTILGLTYSFAARFTEPYSKKYHI FIIIMMIAAFILSFVGFADLINFLYNIMGVVGLFIVVAVLIKYYLRKSDNKDHIA >gi|312979638|gb|ACRM01000027.1| GENE 10 9536 - 9976 413 146 aa, chain - ## HITS:1 COG:no KEGG:SH2241 NR:ns ## KEGG: SH2241 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 145 21 165 166 219 77.0 2e-56 MSNIDFMEFEEVYISCAHEQENIMFYTCILDMMKDNETAELHDLAFLLLVYPLSEVEGAL EAAYYHADASIQLTNGKEIKSLLQMLLLYAIPDPIISDSEAFKVAKQILKLDPNNHVARN VLKDSAKRMDNVIVNFDELKKFGSSK >gi|312979638|gb|ACRM01000027.1| GENE 11 10155 - 10535 440 126 aa, chain - ## HITS:1 COG:SA0607 KEGG:ns NR:ns ## COG: SA0607 COG3412 # Protein_GI_number: 15926329 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 118 1 119 120 131 52.0 3e-31 MTTIVIISHSEDIAKGTKDLLNKMTNDINVIAYGGVNGEIGTSYDDIEQLINQLDDDALC FYDLGSSEMNIDLAIDMYKGKYHIYKVNAPIVEGSFTAAMSLSVGKTANEAIQEVNRSSF KSTAFK >gi|312979638|gb|ACRM01000027.1| GENE 12 10755 - 11546 845 263 aa, chain - ## HITS:1 COG:SA0602 KEGG:ns NR:ns ## COG: SA0602 COG1120 # Protein_GI_number: 15926324 # Func_class: P Inorganic ion transport and metabolism; H Coenzyme transport and metabolism # Function: ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components # Organism: Staphylococcus aureus N315 # 1 262 1 262 265 397 75.0 1e-111 MNRLNASQVDIGYRNTTIIKELDVQICDGKITSIIGPNGCGKSTLLKALSRLIEVKNGEV LLDNQNIQHQSTKEVAKKIAILPQTPTVTDSITVEELVSYGRFPHQKGFGRLSKKDKDEI EWSLNVTGITEFRHQSINDLSGGQRQRVWIAMALAQKTDIIFLDEPTTYLDISHQLEILQ LVQQLNKELGCTIVMVLHDINQAIRFSDYLLIMKEGQIIDNGPTDQVISKEILESVFNID AVLGKDPRTGKPLLVTYNLLEKR >gi|312979638|gb|ACRM01000027.1| GENE 13 11528 - 11704 83 58 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MHLNDSYIGPTFVQKIFTTSIDNRSQLIITSIPFIHIFDYSFYYETTIKNNPKNLRYT >gi|312979638|gb|ACRM01000027.1| GENE 14 11733 - 12566 843 277 aa, chain - ## HITS:1 COG:SA0601 KEGG:ns NR:ns ## COG: SA0601 COG1284 # Protein_GI_number: 15926323 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 77 277 3 203 203 296 83.0 3e-80 MNKNIKNILLVILGSFIFSAGVNAFVISGNLGEGGVTGIAIVLYYAFHISPALTNFVANA ILIVIGYKFLSKKSTILTIIATVLISVFLSLTESWHVETGNVIINAVFGGTSVGLGIGII VLAGGTTAGTTILARIANKYLDVSTAYALLFFDLIVVAISLTVLPLSKALVTVISLYIGT KVMDYVIEGLNTKKAMTIISSKPEEVAKAIDEQVGRGLTILNGHGYYSREEKDVLYVVVA KTQVTRAKRIIKKIDKNAFLVIHDVRDVYGNGFLIDE >gi|312979638|gb|ACRM01000027.1| GENE 15 13080 - 14312 1551 410 aa, chain - ## HITS:1 COG:SA0600 KEGG:ns NR:ns ## COG: SA0600 COG1972 # Protein_GI_number: 15926322 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 1 410 1 409 409 600 83.0 1e-171 MFLLINIIGLLVFLGIAVLFSRNRKHIQWKSILILALLNVFLAWFFVYFQIGRSIVEGLA AAIAWIIQSAHTGTGFAFSSFTSGKQMDMAVSALFPILLVVPLFDILMYFNILPKIIGGI GFVLAKITRQPKFESFFGIEMMFLGNTEALAVSNEQLKRMNEMRVLTVVMMSMSSISGAI VGAYVQMIPGELVLTAIPLNIINAIIVASILNPVTVEEKEDIIYSINNDEKIERQPFFSF LGDSVLNAGKLVLIIIAFVISFVALADFLDRFINLITGLVGSWMGLKGSFGLNQILGVFM YPFALLLGLPWGEAWIVAQQMSKKIVTNEFVVMGEITKVIDTYSAHRRAVISTFLVSFAN FSTIGMIVGTLKGIVDKKTSDFVSKYVPMMLLSGILVSLLTAAFVGLFAW >gi|312979638|gb|ACRM01000027.1| GENE 16 14492 - 14575 58 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGNSYFKFVFPFFFYITVLSLNGVYDK >gi|312979638|gb|ACRM01000027.1| GENE 17 14594 - 16765 2327 723 aa, chain - ## HITS:1 COG:SA0244 KEGG:ns NR:ns ## COG: SA0244 COG1887 # Protein_GI_number: 15925957 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Staphylococcus aureus N315 # 355 714 30 387 389 353 51.0 8e-97 MNKLSIIITYFNSEEYIEDCINSLKNQRNQDFEIIIVDDGSTDHSTQILNKTLASYDKDV TFIQLETNTGHAHARNIALDSAEGQYVMFLDADDQLASYAIEYYLNHINGLDTLIAPIHK FTMQRPQYVDKDKIRLQYRSHHSYPNSILRKETVCNILFRNAIIKAHDIKFNEDLSIFTD NSFVLEYLKYAEHFVRIVNFPFYYRGEVYDPFNGNTLSDQDFIDKFEDYTNSFFDAMQRT TNKEVKKFLVQRMKNEIKKGFDPSLRDIKARYIALEDTLVKVVKALKWNIIKDGKLLYNL EIMFLSMNDIENARYVNELRKKTRLFKSILTNSKMKERAKYQLTDNENIVDPHTIVFESF GGKNYSDSPKYIYEYMQQHYPQYNYIWVFSKPNNNIIPGNATKVKKGSKEYYEAYAKAKY WISNARLPLYLNKKENQVYIQTWHGTPLKRLANDMKVVRMPGTTTANYKKNFYTEASRWN YLVSPNRYSTDIFKSAFWMDEERIWEIGYPRNDVLVTRQNDTEYIEQIKKDLNLPKDKKV IMYAPTWRDDEFVKKGQYLFDLKINLANLKEQIGDDYVILLRMHYLIANALDLTGYDDFA IDVSNYNDISELYLISDALITDYSSVMFDYGILKRPQFFFAYDIEKYDKGLRGFYMNYME DLPGEIITDEFKLAEELKYLDTHKEKYKDKIEAFYNDFCSIEKGQSSQFIADYINNDIHE NES >gi|312979638|gb|ACRM01000027.1| GENE 18 16920 - 18647 202 575 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163803615|ref|ZP_02197481.1| 50S ribosomal protein L34 [Vibrio campbellii AND4] # 336 557 2 226 245 82 25 7e-15 MKQHNPLFFLFKRLSWPYALIITAVIISSLGSLSGLLIPLFTGRLVDKFSTNNINWNIVV LFASIFIINALLSGLGIYLLSKIGEKMIYGIRSLLWEHMIKLKMPFFDKNESGQLMSRLT DDTKVINDFISQKLPQLLPAIITLIGSIIMLFIMDWQMTLLTFIAIPIFMGIMIPLGRRM QKISKHTQAEIANFSGLLGRVLTEMRLVKISNTEQKELNNAHYNLNEIYKLGLRQAKIVA IIQPISSVIMLLMIAIILGFGAIRIATGAITAGALIAMIFYVMQLSMPLMNLSTLVTDYK KAVGASQRIYEIMQEPVEPMEQLNPIANINIENGALEFNNVEFKYDVKTILDYISFRIPQ GDISAFVGPSGSGKSTIFNLIERMYDIDNGDITYGNKSIYDIPITNWRSKIGYVMQSNSM MTGTIRDNILYGINRTVSDEELIKYAKLANCHDFIMQFDEGYDTLVGERGLKLSGGQRQR IDIARSFVKNPDILLLDEATANLDSESEQKIQEALEVLMKGRTTIVIAHRLSTIKKAGQI IFIDQGRVTGEGTHDELMKYHEKYHQFVTTQNLNK >gi|312979638|gb|ACRM01000027.1| GENE 19 18941 - 19339 591 132 aa, chain - ## HITS:1 COG:SA0597 KEGG:ns NR:ns ## COG: SA0597 COG0615 # Protein_GI_number: 15926318 # Func_class: M Cell wall/membrane/envelope biogenesis; I Lipid transport and metabolism # Function: Cytidylyltransferase # Organism: Staphylococcus aureus N315 # 1 132 1 132 132 228 92.0 3e-60 MRRVITYGTYDLLHYGHIELLRRAREMGDYLIVALSTDEFNQIKNKKSYYDFEQRKMMLE SIRYVDLVIPEDGWGQKETDVDRYDVDVFVMGHDWEGKFDFLKDKCEVVYLKRTEGISTT KIKQELYGKDAK >gi|312979638|gb|ACRM01000027.1| GENE 20 19445 - 20509 1180 354 aa, chain - ## HITS:1 COG:SA0596 KEGG:ns NR:ns ## COG: SA0596 COG0463 # Protein_GI_number: 15926317 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Glycosyltransferases involved in cell wall biogenesis # Organism: Staphylococcus aureus N315 # 22 350 4 335 335 206 36.0 6e-53 MKLAVIIPVYNAENTIRKAVKSIDTTHDVEIICINDGSTDRTKQVLTELQKEVKHLIVYH QDNQGAAKSRNMGLSAMSDDIDAFMFLDADDQFLPGKMDQMIQYYEKNDHLDIVIGQIGR GMHGDWKVIPTHEDIHREAMVSLAEAPEILQSIGPGGKLFKAKFNTLRFDEDVVFCEEHT FVTRAYLMSRDIQLVPFIVYGYNEREGSITDQRADTFISYLEDARKVRREVMDMLLLVKE KAYYSYRMDDLIVSYLIQAYLIKYSKVTLQIIDKITQYIRDMQHTNYSGEALFRIVQAVE QSATHWTRETYELWRHTLIEVGIGRPGFLRFQAQIMPKKLVFSGKQSLKRMMNK >gi|312979638|gb|ACRM01000027.1| GENE 21 20506 - 21597 944 363 aa, chain - ## HITS:1 COG:SA0595 KEGG:ns NR:ns ## COG: SA0595 COG1887 # Protein_GI_number: 15926316 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC # Organism: Staphylococcus aureus N315 # 212 363 1 156 156 177 58.0 2e-44 MTRVVIKNIYMTLITIVNQIFRFKRLKSNHIAILMTFPEDVMPIIEQLNQKGYELTVIAK EKEWAKLKQFKNVSFVPAGNSHIVRHIKTISTAKVIVIDTYYLMLGGYHKKKGQTIIQTW HASGALKNFGLTDHQVDLNNKKMIQQYKSVYNATDYYLVGGEEMSRCFESAFDAKSTQML KLGLPRLTKYFKLDLKTEQKNLKKYYNVPNKLALYVPTYRENQMDNRQIDKVYFEKQLPN YTLINQLHPSIPNSEHIATTSELMMMADIIISDYSSLPIEASLLNKPTLFYVFDEKEYEE VRGLNQFYRDIPTFYKVKHIDELVTKIKYNEKEIKPLFKHWHKYNSEKSLENVLKFIEKL VKE >gi|312979638|gb|ACRM01000027.1| GENE 22 21823 - 22635 897 270 aa, chain - ## HITS:1 COG:SA0594 KEGG:ns NR:ns ## COG: SA0594 COG1682 # Protein_GI_number: 15926315 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate export systems, permease component # Organism: Staphylococcus aureus N315 # 1 270 8 277 277 379 72.0 1e-105 MSAVGTVFKEHIKNFYLVQRLAQFQIKITNTNNYLGMAWELLNPALQIMVYWFVFGMGIR SNQPIHGIPFILWLLVGISMWFFVNQGILEGTKSVSMKFNQVAKMNFPLSIIPTYIVTSK FYGHIGLLALIIAICMGNGIMPSIHIVQLLIYVPLTFFFVASVALFTSTLGIIVRDTQMI MQALLRILFYMSPILWIPKDTGISSVINDIMKFNPVYFLAESYRAAILFHQWYFIEHWRL LLYNIVIIIVFFVLGSILHRRYRDHFADFL >gi|312979638|gb|ACRM01000027.1| GENE 23 22950 - 23744 971 264 aa, chain + ## HITS:1 COG:SA0593 KEGG:ns NR:ns ## COG: SA0593 COG1134 # Protein_GI_number: 15926314 # Func_class: G Carbohydrate transport and metabolism; M Cell wall/membrane/envelope biogenesis # Function: ABC-type polysaccharide/polyol phosphate transport system, ATPase component # Organism: Staphylococcus aureus N315 # 1 264 1 264 264 432 82.0 1e-121 MSVSVNINHVTKEYRIYRNNKERIKDALIPKNKNKTFFALNDVSITAYEGDVIGLVGING SGKSTLSNMIGGSLSPSSGNIDRHGEVSVIAINAGLNGKLTGIENIEFKMLCMGFKKKEI KRLMPQVIEFSELGEFIYQPVKNYSSGMRAKLGFSINVTINPDILVIDEALSVGDQTFTQ KCLDKIYEFKEANKTIFFVSHNIRQVREFCTKIAWIEGGKLKEFGELDTVLPKYEQFLKD FKKKSKKDQKAFRQQLDEKRFVVK >gi|312979638|gb|ACRM01000027.1| GENE 24 23792 - 24550 647 252 aa, chain - ## HITS:1 COG:SA0592 KEGG:ns NR:ns ## COG: SA0592 COG1922 # Protein_GI_number: 15926313 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Teichoic acid biosynthesis proteins # Organism: Staphylococcus aureus N315 # 1 241 1 241 254 355 69.0 3e-98 MYSSKKKKNDKVDILGVQFDNVTMLDMVENIKHFFENNTNDNLFIVTANPEIVVYASEHV TYRKLINSASYIIADGTGVVKASNRLKQPLKRRVPGIELMEECIKVAHEQSQKVYLLGSK NEIVAQAQHKLQQKYPNVTFEYHHGYIDLSDETVVKRIQRFNPDYLFVGMGVPKQEEWIQ KNESNFKHTVMMGVGGSLEVFSGTKKRAPRLFRNLNMEWVYRLLIDWKRIGRIKSIPKFM FKVWKLQNKKKK >gi|312979638|gb|ACRM01000027.1| GENE 25 24687 - 25472 740 261 aa, chain + ## HITS:1 COG:no KEGG:SH2261 NR:ns ## KEGG: SH2261 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 15 261 1 247 247 252 67.0 9e-66 MIYNRSHTINVRLIMDYLQQFLTTTVILNIYLVIIIAISYIIIHQNRHCSFNQYLDIYLN YIPVLTHEMGHILFNKLSGGHAKDLVIVVHPSERKETLQQGYAITQSKSVTGQCITTLGG YVMPPIMLMIGFWTIHFNYPSLFLILYSLIFMYYLILTSRKLSPIIVLIILISLLYFLLQ GNNQFMIFYIVVLLCHLILGVLLGEVLQSSWTIILLTFQRVKTHWDGNTLAELTHLPTLF YSLFWIMINGFSLYLIYKFMI >gi|312979638|gb|ACRM01000027.1| GENE 26 25514 - 26161 509 215 aa, chain - ## HITS:1 COG:SA0590 KEGG:ns NR:ns ## COG: SA0590 COG1321 # Protein_GI_number: 15926311 # Func_class: K Transcription # Function: Mn-dependent transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 214 1 214 214 291 75.0 9e-79 MLTEEKEDYLKAILTNGGDSAFVSNKILSQYLDIKPPSVSEMVSRLEKAGFVETKHYKGV KLSKEGLSHTLDIIKRHRLLEQFLIEVLNYNWEEVHQEAEILEHKISDLFLERIDKLLNY PETCPHGGVIPRNYIYKEKYNDSLLEYDEGDIVNIKRVRDRTDLLVYLSSKHISIGDNIE IVSKDKTNKVMIINNDTTMTILSYDNAMNIFVEKN >gi|312979638|gb|ACRM01000027.1| GENE 27 26352 - 28391 2226 679 aa, chain - ## HITS:1 COG:SA0585 KEGG:ns NR:ns ## COG: SA0585 COG0025 # Protein_GI_number: 15926306 # Func_class: P Inorganic ion transport and metabolism # Function: NhaP-type Na+/H+ and K+/H+ antiporters # Organism: Staphylococcus aureus N315 # 1 678 1 680 680 1053 81.0 0 MEIFETILIFLAVVIVSSFVHTFIPKVPLAFIQIILGMILFILPVPVEFNFDSELFMLAT IAPLLFVEGVNVSRVHLRRYIKPVMLMALGLVITTVIGVGLFIHLVWPDLPIGAAFAIAA ILCPTDAPAVQAITQGKVLPKGAMTILEGESLLNDAAGIISFKIAVGILVTGAFSLFEAI QQFLIASIGGAIVGLFIGILLVRFRLTLTRRGIENINMFVFLQLLTPFVTYLVAELFHAS GIIAAVVAGLVHGFERDRIAQTRTRLQLSYNHTWNILGYALNGFVFSILGFLVPEVIVKI IKSEPHNLLFLIGITLLVALAVYVFRFIWVYVLYPLFYLSVSPFQKLMNDEGTNTKEKPP KRSMYALIMTFCGVHGTISLAIALTLPYYLQNHEAFKYRNDLLFISSGMVILSLVIAQII LPFVTKNAPQPKIGSMNFKEARIYILEHVIDYLNKHSSFETSYRYGNVIKEYHDKLTFLK SVEKDDENSKELERLQRIAFNVETKTLEKLADEGEITESMLENYMRFAERTQVYRQASLI RRIIVGIRGLLLKRHIRTRTNAASSLSVTENLMELSKINKRVHYNVVSRLVEEANEDNKL EVGMICDGYLMRIDNLSPSNFFNTRSEDSITKIKLNALREQRRILTELISDEEITEATAL KLREAINYDEMVIVDSLTD >gi|312979638|gb|ACRM01000027.1| GENE 28 28585 - 29085 519 166 aa, chain - ## HITS:1 COG:SA0584 KEGG:ns NR:ns ## COG: SA0584 COG1320 # Protein_GI_number: 15926305 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhG subunit # Organism: Staphylococcus aureus N315 # 1 142 1 142 145 188 74.0 3e-48 MELIKSVTELIASILIFLGSIIAVISAIGIVKFQDVFLRSHASTKSSTLSVLLTLIGVLI YFTTVQGFFSVRLLLSIVFINLTSAVGMHLVARAAYRTGAYMYRKDDAPRQSSILLSSKE FNTREELKSRAKKREEQREKLYYDIKNHRAEERKQQGDKNIEDLEE >gi|312979638|gb|ACRM01000027.1| GENE 29 29060 - 29362 321 100 aa, chain - ## HITS:1 COG:SA0583 KEGG:ns NR:ns ## COG: SA0583 COG2212 # Protein_GI_number: 15926304 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhF subunit # Organism: Staphylococcus aureus N315 # 1 98 1 98 100 93 72.0 8e-20 MIQAMTNFFSTGALILFGIAFIIGLFRLIKGPTTADRVVAFDASSAVIMCIVGVVSVIYG TDAYLDSIMLIAIISFVSSVSISRFIGGGRVFNGTHKKRH >gi|312979638|gb|ACRM01000027.1| GENE 30 29359 - 29841 467 160 aa, chain - ## HITS:1 COG:SA0582 KEGG:ns NR:ns ## COG: SA0582 COG1863 # Protein_GI_number: 15926303 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhE subunit # Organism: Staphylococcus aureus N315 # 1 160 1 160 160 200 79.0 7e-52 MRQIVLNILIAFLWVLFQDQGSFLFSTFVSGYLIGLIIIYILHRFFGQEFYLVKIWVAIK FLAIYLYQLITSSLSIIKYILFKTKDMNPGLLTYETELKSDWAITFLTILIIITPGSTVI RISKLTNKFFIHSIDISENEKANLLKSIKQYERLIMEVSR >gi|312979638|gb|ACRM01000027.1| GENE 31 29838 - 31337 1695 499 aa, chain - ## HITS:1 COG:SA0581 KEGG:ns NR:ns ## COG: SA0581 COG0651 # Protein_GI_number: 15926302 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit # Organism: Staphylococcus aureus N315 # 1 495 1 495 498 671 77.0 0 MNSNLLILPILLPLLCALLLVFTKNKNRVSKILYIGTMTVNTLISLALLIYVMNHKPITL DFGGWKAPFGIQFLGDTLSLLMVTVASFVVTLIMAYGFGPAEERVNRYYLPTFILFLTTG VIGAFLTSDLFNLYVMFEIMLLASFVLVTLGQSIEQLRAAIVYVVLNIIGSWLFLLGIGL LYKLVGTLNFSQVALRLDDIHNNEMVVVIAIVFMIAFGSKASLVLFMWLPKAYAVLNTEL AALFAALMTKVGAYALIRFFTLLFDQHPNITHPILVFMSCITMIIGAFGVIAFKDIKKIA AYQVILSIGFIILGLGSNTFAGIHGAIFYLTNDIVVKTLLFFIIGSLVYMSGYREYKYLY GLAKREPFFGVAFIVMIFAIGGVPPFSGFPGKVLIFQGAVQNGNYIGLALMILTSLLAMY SLFRILFIMYFGDADGEQVDYNPLPVHRKCMIGILTVVVLVMGLAAPIVMNVTKNATKLN TNDAYFHHLVNPHLKEKNK >gi|312979638|gb|ACRM01000027.1| GENE 32 31327 - 31674 417 115 aa, chain - ## HITS:1 COG:SA0580 KEGG:ns NR:ns ## COG: SA0580 COG1006 # Protein_GI_number: 15926301 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhC subunit # Organism: Staphylococcus aureus N315 # 1 112 1 112 114 144 77.0 4e-35 MNLILLLIIGFLVFLATYMILSLNLIRIIVGISIYTHAGNLIIMSMGHYSDHVTEPLIRG SNTNYVDPLLQALVLTAIVIGFGMTAFLLVLVYRTYRVTKESEIDVLREDEDDEQ >gi|312979638|gb|ACRM01000027.1| GENE 33 31671 - 32096 425 141 aa, chain - ## HITS:1 COG:SA0579 KEGG:ns NR:ns ## COG: SA0579 COG2111 # Protein_GI_number: 15926300 # Func_class: P Inorganic ion transport and metabolism # Function: Multisubunit Na+/H+ antiporter, MnhB subunit # Organism: Staphylococcus aureus N315 # 1 141 1 141 141 153 75.0 7e-38 MKENDVVLKTVTKIVVFILLTFGFYIYLAGHNNPGGGFIGGLVFSSAFILMFLAFDVKKV LDSLPIDFRKLMIIGALISLITAIAPTFFGKSFLYQSEFTLHLPIFNEMHITTVTIFELG IVLSVVGVIVTIMLALSGGKS >gi|312979638|gb|ACRM01000027.1| GENE 34 32083 - 34485 2278 800 aa, chain - ## HITS:1 COG:SA0578_1 KEGG:ns NR:ns ## COG: SA0578_1 COG1009 # Protein_GI_number: 15926299 # Func_class: C Energy production and conversion; P Inorganic ion transport and metabolism # Function: NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit # Organism: Staphylococcus aureus N315 # 1 630 1 630 630 742 66.0 0 MSLIYLLGALLLIIGMVLITLFIRPLRRYAGYISLFAPVIASVYFLSQIPNVLHQKVISF KLAWMPAIDLNLDLRLDGLGLMFALIISIIGIAVFFYATQYLTPNGDNLPRFFIYLLLFM FSMLGIVISNNTILMYIFWELTSVSSFLLISYWYSNANSQLGAIQSFMITVFGGLTLLTG FIMLYIMTGTNTITEILSQGHHISEHPLFIPMIIMMLIGAFTKSAQFPFHIWLPKAMAAP TPVSAYLHSATMVKAGIFLLFRFTPVLGLSNSYIYIVTFVGLITMMFGSLTALRQYDLKG ILAYSTVSQLGMIMTMVGLGGGIAQHPSGPMAKIYTLILFAGLFHVMNHALFKCTLFMGV GIIEHEAGTRDIRKLNGMRKFFPKMHLSMTLAALSMAGVPFLNGFLSKEMFFDSLVKSIE LEQFSLTLTIIIVALGVIASIFTFVYAVYMLKETYWGEFNEKEVPKKHIHEPWLFSLPAM IFAVMLPVIFFIPNTFTHPIVLPALRNVTNLGIQVDKMAPHVSQWHGINLPLIFSIIVII LGIILATKVNWKVLTHRLIKTASITNSYRKAYSVFEHYAGCSIRGVMTNRLNYYNVITLL VFSLFVAYGFLRVGFPKLHLMHVTDFGSLEVLLAISISVVGIALVFIRQRLTMVILNGII GYSVALFYLIMRAPDLALTQLVVETMTTILFIVSFSRLPNISRKKADKKKEMMKIVVAFI FAGAVVTLVFMAQQGDGLETISKYYMNAKELTGGKNIVNAILGDFRALDTMFEGLVLIIA GLGIYTLLNYKDRRGQDERK >gi|312979638|gb|ACRM01000027.1| GENE 35 34500 - 35057 589 185 aa, chain - ## HITS:1 COG:SA0577 KEGG:ns NR:ns ## COG: SA0577 COG0582 # Protein_GI_number: 15926298 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Staphylococcus aureus N315 # 1 185 1 186 186 164 51.0 6e-41 MNYVEPIKKKNDIKKMYHVLQTKSDRDYLLFKLAIHTGMRLTDLLHLKVEDIKNKENKEI KTAWIQQSAPFIKIMIPSDLRNEFDTYIYENQLKDHHLLFQSLRTHKELSRQQAYRIIHH AAKELGLLHIGLTTLRKTFAYHAYKSGISIAIIQKYLGHQTTHETLKFIGLSPKEDHHTI IALNL >gi|312979638|gb|ACRM01000027.1| GENE 36 35200 - 35406 301 68 aa, chain + ## HITS:1 COG:no KEGG:SH2277 NR:ns ## KEGG: SH2277 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 67 1 67 68 80 68.0 2e-14 MNEITQLSVICTHVTHDTNGKAKEIKRRFNNINTRASEADIKSFVTTISNLIEESFDKVE VVKTQGLV >gi|312979638|gb|ACRM01000027.1| GENE 37 35439 - 35660 335 73 aa, chain + ## HITS:1 COG:no KEGG:SERP0279 NR:ns ## KEGG: SERP0279 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 71 1 71 74 69 53.0 4e-11 MSKTLELIFKTNLNKTAKLQLPQISATITEANVQSAMENIVKLDVLRFTSGAPSKVASAQ IVDKTTTVLFELN >gi|312979638|gb|ACRM01000027.1| GENE 38 35842 - 36768 997 308 aa, chain + ## HITS:1 COG:SA0574 KEGG:ns NR:ns ## COG: SA0574 COG3238 # Protein_GI_number: 15926295 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 308 1 309 309 279 59.0 5e-75 MLFLFVLGIIAGMMVPIQTSINSRLGRFTESSFYASTISFFVGTLFLLILNIIFNIQMFS SSFYAGHSIDYHWWVGGLLGVCFLTGNLLLLPRLGAALTVVMTVAGQIIMGVMIDTLGLL GANQTSFTFLKGVGILVLLFGILLMNHLPKNKLKDKRNISLYIWLLIGFIFGFAPPLQTT INSGLSKQMDSSLFAALVSFTIGTIALFILTIIFNRSLKIKLSQQHVGRIKPLYFIGGIL GVVFVTSNIILMPYLGAALTTIVAMLGQMIMGVIIDHFGIGVPKNEMTFRKFIGLIAIAI GIVLLRLF >gi|312979638|gb|ACRM01000027.1| GENE 39 36916 - 37854 776 312 aa, chain + ## HITS:1 COG:no KEGG:SH2280 NR:ns ## KEGG: SH2280 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 309 1 307 308 289 55.0 9e-77 MKKFLSPLSIMLTLLLILIILFGFYIYSKIPKTTHLSKIETMTVKPHYPLSFQGVQQAKQ SYTLYYEPSLGISSDILVKNNEIISKDTPIFKYYNPHIEKHILAKKKLLSSIQHSNKISS DNFNQQVQLSNDILNLQQQLQTRIYAPIKGRVTVLQPFPSKSHTEIMQINSDERIIHAKI KESQLKQLKNNQLVQVSIKNTRQFEGKILSISSIPYKTETSSSFYYVDISTDPSYPIGYH FDLHLGTTEYELPDKVIYNKNYVLVIHNKKIIKRNIKYIKSKKSGYIMVSNGLNIGDKII THPSASLLESTE >gi|312979638|gb|ACRM01000027.1| GENE 40 38170 - 38544 546 124 aa, chain + ## HITS:1 COG:SA0573 KEGG:ns NR:ns ## COG: SA0573 COG1846 # Protein_GI_number: 15926294 # Func_class: K Transcription # Function: Transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 124 1 124 124 170 87.0 6e-43 MAISKINDCFELLAMITYADKLKSIIKKEFSISFEEFAVLTYISQSKEEEYYLKDIINHL NYKQPQVVKAVKNLSQEDYFDKKRNEHDERTVLILVNATQRTKIDELLNRVNKRIEEANK ETEL >gi|312979638|gb|ACRM01000027.1| GENE 41 38789 - 39604 923 271 aa, chain - ## HITS:1 COG:SA0572 KEGG:ns NR:ns ## COG: SA0572 COG0596 # Protein_GI_number: 15926293 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Staphylococcus aureus N315 # 1 259 1 259 262 263 48.0 3e-70 MKKIETFNQIKIAYQDVGTGIPVILIHGLDGNLAGFYSLKKELKKHYRVIVYDVRGHGKS THPMSYNLNDHIKDLTMLMRQLGIKSAHLLGHDMGGMIAQAFTEKYKDKVRSLTIISSKS EDIVHGFTKLMIEHQDKVAGFNKSEALLILFPYIYKKNDVAMKWFQRQRLYSKQDDEDSA VASRALLDTENQSNTVTHEINVPTMIVDGRYDPIIINKENQQFENQFKNINYVLFNESGH APHIEEEEKFLTLYLNFVEKNDVSNTTNLLI >gi|312979638|gb|ACRM01000027.1| GENE 42 39761 - 40066 285 101 aa, chain - ## HITS:1 COG:no KEGG:SLGD_02211 NR:ns ## KEGG: SLGD_02211 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 101 138 238 238 107 61.0 1e-22 MIAIIALILIIMRAFNLTIGIVPITMYSHQFIFFMGLIMSLCGVIFKRLEYTAVGLLFSQ KTIDAVIVNSNVAQTVSLIIWIIIVVLIVTYTIRLSSRRSI >gi|312979638|gb|ACRM01000027.1| GENE 43 40228 - 40479 224 83 aa, chain - ## HITS:1 COG:no KEGG:SH2284 NR:ns ## KEGG: SH2284 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 83 1 83 238 123 68.0 2e-27 MRSNDKLLLENVNDYFTHKGMPPKLIDDIKENISNDFKKSEEKKQDYLDFRGKATAQIIL IIQRNLFGLQLNPILYFLLSILF >gi|312979638|gb|ACRM01000027.1| GENE 44 40686 - 41192 738 168 aa, chain - ## HITS:1 COG:no KEGG:SH2285 NR:ns ## KEGG: SH2285 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 168 1 168 168 219 76.0 4e-56 MKKLATALLVSGLVMTGVGYNHAEAASGNSIQTVQQLTQGQKTLENVTIGESIKNVINHY GTPIYSYNPNNQEKYYEFHTNKGVLVVTAIGKKNTGYVTRVSMTYNQANGPTYQKVAQSV GKKAIKRVQYNSVSGNFAYIQNGKTSYQFGSSSPKDKVLKLYRIDINK >gi|312979638|gb|ACRM01000027.1| GENE 45 41325 - 42119 971 264 aa, chain - ## HITS:1 COG:SA0569 KEGG:ns NR:ns ## COG: SA0569 COG0596 # Protein_GI_number: 15926290 # Func_class: R General function prediction only # Function: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) # Organism: Staphylococcus aureus N315 # 1 260 1 260 266 326 61.0 3e-89 MELFTRKGGFTLNYNTMGQGYPVVLVHTAFENASIFQNLAHELSKTFQVVLLDLRGHGYS DKPRHIKFNEFADDIILLLDYLYIDQAAFIGHEMGATIIAHLSKQYPEYVSSLTMINPTS IEGELPEERLFRKYAHKIRNWNEDKQEKFLDKHRYYKHRKVNKFLKNVEDTNSISTKEET EAVDEVFKQRGIAEVFEYITKPTFIVASAYGERITSLESKEVADLIGNVHFEVYSKSSMY PFEEEQEKFIHDVTPFIKKHMPQH >gi|312979638|gb|ACRM01000027.1| GENE 46 42120 - 42824 802 234 aa, chain - ## HITS:1 COG:SA0568 KEGG:ns NR:ns ## COG: SA0568 COG1011 # Protein_GI_number: 15926289 # Func_class: R General function prediction only # Function: Predicted hydrolase (HAD superfamily) # Organism: Staphylococcus aureus N315 # 1 234 1 234 239 358 83.0 4e-99 MDLSQIKAVVFDLEGTLLDRTKSRDKFIEEQYERFHDYFVHVQLADFKHKFIELDDDEDN DKPYVYKEIIKQFHIDRLKWKDLFHDFEMHFYRYVFPYYDTLYTLEKLSEHDYLLGVIAN GKSKIKQFRIYSLGIEHVINYLSTSETVGYRKPHPRIFEDMIDQLDVLPEEIMYVGDDAL NDVAPARAMGMVSVWYKQENAELEPLEEEVDYIITTIEELLTILSVNKQKKGDN >gi|312979638|gb|ACRM01000027.1| GENE 47 42883 - 43839 773 318 aa, chain - ## HITS:1 COG:SA0567 KEGG:ns NR:ns ## COG: SA0567 COG0609 # Protein_GI_number: 15926288 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-siderophore transport system, permease component # Organism: Staphylococcus aureus N315 # 12 316 10 314 316 263 54.0 3e-70 MKRHLYLTFSVWTFCLCIIIAISLFWDLGSLHQAFNQMIFFKVRVPRTFEALMVGAILTL TGQLFQTVLNNPLADSFTLGLASGATFGSSLAIFLGVSFLFIPIFSIIFSITTLLLVVIM TIVLSRNFPIRVLIISGLMVGAFFNALIYILTLIKPERTNRMLAYYFGGFANAEMNELVY ITMVSLPIIIVIYSLVTPIKLLQLGEAKSKSLGLNVQWITFIVLLLTSIMTAIAVAFIGV IGFIGIIVPQLIRRYYFQYSLAIQMTLNLLIGALTMLFADVIGKMVINPVQIPASIILSL VGIPILFYILVTQSNKTR >gi|312979638|gb|ACRM01000027.1| GENE 48 44030 - 44950 1036 306 aa, chain - ## HITS:1 COG:SA0566 KEGG:ns NR:ns ## COG: SA0566 COG0614 # Protein_GI_number: 15926287 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type Fe3+-hydroxamate transport system, periplasmic component # Organism: Staphylococcus aureus N315 # 4 306 3 295 295 375 64.0 1e-104 MNNKKLWIILFTLVLVLAACGQNQSSEKGHHSTHSTEQETMDHNDNTHTYHRIISLIPSN TEILYRLGLGKNIIGVSTVDDYPKNVKKGKQQFDAMNLNKEALLKAKPDLILAHESQKSS AKKTLDSLADSGVKVVYVKDAQSLNQVYDSFEQVGKVTHHEKEAKQLVKETKDNVQKVIE SIPAHHKKQSVFIEVSSKPEIYTAGKETFFNDMIEKLDTKNVFSNVSGWKAVDKESIIRK NPDILISTEGISKEEYYEVIKERDGFSEVNAVKNERVETVNGDEISRPGPRIDEGMKELR DAIYKR >gi|312979638|gb|ACRM01000027.1| GENE 49 45154 - 45657 556 167 aa, chain - ## HITS:1 COG:SA2133 KEGG:ns NR:ns ## COG: SA2133 COG3152 # Protein_GI_number: 15927922 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 2 163 10 181 206 62 28.0 5e-10 MIEAFKLFWQNYFNVKSRTRRRHYWFAILANCIILVIISLLFNIITLGLNGGHTFFDIVY EIIDIIIFIGTFTMTVRRLHDTGHTLVLPLIILIFTLIRKISSIVDRTYGISIDGFFNGM IALESGIMVAAMSLVLLIILVITFAFTIKDSDEGTNKYGPNPKIAAV >gi|312979638|gb|ACRM01000027.1| GENE 50 45733 - 46494 695 253 aa, chain - ## HITS:1 COG:SA2178 KEGG:ns NR:ns ## COG: SA2178 COG0789 # Protein_GI_number: 15927968 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 7 249 5 233 246 90 31.0 4e-18 MENQVYFTPSDVSHITEVTKRTLHYYHEIELLVPTYIASNGYRYYSSKDISKLQTIQFLR ELNVSLADIQLYFSNSIEEKNIILENNYQCIVAQRDQLNKMIHFLNHHLVNHRKEEINMS KWNNDNIQNQYEKEAEMKYSHTPYYQAFKENQKQLNSTEKQQNNKRTMERLHSFFDKMNE LFIANYKTNHIQVKQAISELKDILQTQVPNVDEQFLEYIASIYENDERFAKTINNKRHDN LNQYIADAIRNDI >gi|312979638|gb|ACRM01000027.1| GENE 51 46585 - 47232 609 215 aa, chain - ## HITS:1 COG:SA0565 KEGG:ns NR:ns ## COG: SA0565 COG2231 # Protein_GI_number: 15926286 # Func_class: L Replication, recombination and repair # Function: Uncharacterized protein related to Endonuclease III # Organism: Staphylococcus aureus N315 # 3 211 1 209 211 258 62.0 4e-69 MSMMTTEQLYKALLKHMGPQGWWPADTREEIILGTILVQNTNWNNAALSLRRLKEATHFE PQNILDLPIEELKILIRSSGFYNNKAKAISTLFNWLNQYQFDYCKINEVYGEHLRNELLK LHGIGSETADVLLVYIFERVEFIPDHYTRRLYRKLGYANTENYDKLKRHVELPSNFTNQD ANEFHALLDNFGKNYFNGSIEQRYYFLDPYFTNMD >gi|312979638|gb|ACRM01000027.1| GENE 52 47312 - 48973 2150 553 aa, chain - ## HITS:1 COG:SA0564 KEGG:ns NR:ns ## COG: SA0564 COG0018 # Protein_GI_number: 15926285 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Arginyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 553 1 553 553 903 83.0 0 MNIIEKVKKTLIQEIEASIKKANLAEDIPEIKVEIPKDTKNGDYSTNIAMVLTKIAKRNP RDIAQAIVDNLDTSKANVKQVDIAGPGFINFYLDNQYLTAVISEAIQKGDKFGYAEEPKN KKILLEYVSANPTGDLHIGHARNAAVGDSLANILIAAGYDVTREYYINDAGNQITNLARS IETRFFEALGDTSHEMPADGYNGKDIVEIGKDLAKKHPEMKDYSDEERLKTFRQLGVDYE MDKLKKDLSDFNVHFDNWFSETSLYENGAIDNTLEKMHELGYTYEADGATWLRTSDFKDD KDRVLIKKDGNYTYFTPDTAYHYNKINRGNDILIDLMGADHHGYINRLKASLETFGVDSD RLEIQIMQMVRLMQNGEEVKMSKRTGNAITLREIMDEVGIDAARYFLTMRSPDSHFDFDL ELAKEQSQDNPIYYAQYAHARICSILKQAKEKGIEIDKNADFSTITNEKAIDLLKKVAEF EPTIESAAESRAPHRLTNYIQDLASAFHKFYNAEKVLSDDIEKTKAHVALIEAVKITLHN ALALVGVSAPESM >gi|312979638|gb|ACRM01000027.1| GENE 53 48970 - 49386 345 138 aa, chain - ## HITS:1 COG:SA0563 KEGG:ns NR:ns ## COG: SA0563 COG4506 # Protein_GI_number: 15926284 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 138 5 142 142 179 70.0 1e-45 MDKNIHIQTKQVLKQNGEKQIFEFSSQGSWQQKHADYIRYQEQIESAVVNVTIKIEDNGV KLIRKGDINMNLHFVEGKDTTTLYTIPAGRIPLIVRTKSILHFVNENGGKLKIQYELHQN DEKMGSYQYEIKYKEIGE >gi|312979638|gb|ACRM01000027.1| GENE 54 49690 - 49830 154 46 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475099|ref|ZP_04059826.1| ## NR: gi|228475099|ref|ZP_04059826.1| hypothetical protein STAHO0001_1895 [Staphylococcus hominis SK119] # 1 46 1 46 46 68 95.0 1e-10 MKNILLFVSSIGFGIIFFYKYRTLLEKYHYDIVELESEVDILERKK >gi|312979638|gb|ACRM01000027.1| GENE 55 50013 - 50150 61 45 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVNYIEDVLEEAKRARAEPLSETHDKFMKILKTVKAFISNRLLRH >gi|312979638|gb|ACRM01000027.1| GENE 56 50373 - 50879 683 168 aa, chain - ## HITS:1 COG:no KEGG:SH2326 NR:ns ## KEGG: SH2326 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 168 1 168 168 302 88.0 3e-81 MAENKGFKFNIIKNDPLDGHKGTNIGAISLDNIAPVFIDVANKEAFVDIGGMHARAEVEK GVKWITDKESVEGPEAKEYWLCWVTTERGEHGPYYAGVTACYLLVNKSIRRGYKSMPEHV NMMDKSMKHQVIIDQIGEENKKVLKDFLISHNETMWNNSNETLFKAFD >gi|312979638|gb|ACRM01000027.1| GENE 57 50952 - 52250 1315 432 aa, chain - ## HITS:1 COG:SA0560 KEGG:ns NR:ns ## COG: SA0560 COG1078 # Protein_GI_number: 15926281 # Func_class: R General function prediction only # Function: HD superfamily phosphohydrolases # Organism: Staphylococcus aureus N315 # 4 432 3 431 431 729 82.0 0 MTQSSYVTKKLAEEKVFKDPIHKYVHVKDQLIWDLIKTKEFQRLRRIKQLGTLYLAFHTA EHSRFGHSLGVYEIVRRMIDESLVGREAWNSKDRPLALCAALLHDLGHGPFSHSFEKIFN TDHEAFTQEIITGNTEVNEVLSRVSETFPQEVADVINKTHKNKLVISMISSQIDADRMDY LQRDAYFTGVSYGTFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPV SRGGEVLLNNCLKRVKQLYKEDYQFKMYPKEFIPFFEGTITIDQYVELDEVTVLFYLKKW IHEEDEILSDLARRFINRDLFKYIPFDGSIITITELQDLFIEGGIDPEYYFVSEAFSDLP YDYDRPGSNRQPIHLLRQNGSIKEISSQSLVISSITGINREDYKLYYPKEMILNIKDPEV KGSIINLLNELN >gi|312979638|gb|ACRM01000027.1| GENE 58 52314 - 52790 529 158 aa, chain - ## HITS:1 COG:SA0559 KEGG:ns NR:ns ## COG: SA0559 COG0454 # Protein_GI_number: 15926280 # Func_class: K Transcription; R General function prediction only # Function: Histone acetyltransferase HPA2 and related acetyltransferases # Organism: Staphylococcus aureus N315 # 1 158 1 158 158 214 70.0 4e-56 MYTIRKATTNDVIAIRDVATKAWYNTYLNIYAVSTINELLAASYNEHHLKKRLEEQLFLV VEENNEIVGFANFIYGKELYLAAHYVHPGVQHKGYGTSLLEKGLQEFESEYDTVFLEVDN KNKEAIHYYQHHGFEIIRSYQPEMYGEQLDLALMKKVL >gi|312979638|gb|ACRM01000027.1| GENE 59 52885 - 53421 771 178 aa, chain - ## HITS:1 COG:SA0558 KEGG:ns NR:ns ## COG: SA0558 COG0655 # Protein_GI_number: 15926279 # Func_class: R General function prediction only # Function: Multimeric flavodoxin WrbA # Organism: Staphylococcus aureus N315 # 1 177 1 177 178 269 69.0 2e-72 MITVLFGGSRPQGNTAQLTQYALEGKQYNWIDLTQYHFKPVRDYRHESKQIESYIDDYQL IIDQVLESDTVIFASPVYWYSVSASLKAFIDHWSESLIDPKYQDFKTKMSNIDFRLILVG GDCPKVKAKPCIKQLEYSLDFLGAKLNGYIIGTAERPGDVMKDVYALERAQEWNAVLS >gi|312979638|gb|ACRM01000027.1| GENE 60 53570 - 54505 1377 311 aa, chain - ## HITS:1 COG:SA0557 KEGG:ns NR:ns ## COG: SA0557 COG0667 # Protein_GI_number: 15926278 # Func_class: C Energy production and conversion # Function: Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) # Organism: Staphylococcus aureus N315 # 1 311 1 311 312 469 77.0 1e-132 MAEFVQLGKSDVHVFPVALGANAVGGHNLYPNLDEEQGKDVVRKAIDNGITLIDTAFIYG PKRSEELVGEVVKEYPREKVQIATKGSHVIKDNGDVVQNNQPDYLKQQVEESLERLQVDY IDLYYIHFPDEDTPKDEAVAALQELKKEGKIKAIGVSNFTLDQLKEANKDGYVDVIQLEY NLLHRENEEVMKYAAENDITFVPYFPLASGILAGKYEENQTFDDHRATRRDFQPEVFNDN VRRVKELSSIAETHNTSIANIVLAFYLTRPSLDVVIPGAKRADQVVENIEAANIELTEEE IKKIDTLFPIE >gi|312979638|gb|ACRM01000027.1| GENE 61 54661 - 55101 512 146 aa, chain + ## HITS:1 COG:SA0552 KEGG:ns NR:ns ## COG: SA0552 COG1959 # Protein_GI_number: 15926273 # Func_class: K Transcription # Function: Predicted transcriptional regulator # Organism: Staphylococcus aureus N315 # 1 146 1 146 146 160 58.0 8e-40 MNLEFNIAVHVLSFLVKHDNQQFSSQTLAKLTCLNPVQLRRVTTVLNQYQFIKTSRGKNG GYSANHSTASIKLSVLYRIFVLEKDSQQRIFTGHEQSDCEISRNIAKTMSHYNQKEHRVI LNFYDTLTINDVINDTLQEDTTYDTL >gi|312979638|gb|ACRM01000027.1| GENE 62 55088 - 56410 399 440 aa, chain + ## PROTEIN SUPPORTED ## NR: gi|163788782|ref|ZP_02183227.1| 30S ribosomal protein S1 [Flavobacteriales bacterium ALC-1] # 1 433 1 443 458 158 25 1e-37 MTHYNLIVIGFGKAGKTLAKYASSQGQQVALIEQFTESYGGTCINHGCIPSKVLVNDGIK HVDFSTAFSRKKEVVNALNQKNYLNLENDENITLLNFKAQFKSNTEVELIDEKGKLVQTL TADKILINTGAKSNIPNIEGIDSAQNVYDSKGLLNISYQPKELVIIGGGYIALEFASMFQ SFGTNVTVLEYNKQFMAREDHEIVKHIINDFKDKGVRLITNVETKALKNEGNLTTVETSQ GNFTGDAILLATGRVPNTDLALDNTDIELGTHGEIKVNNHLQTSVSHIYAAGDVKGGLQF TYISLDDFRILKSELFGDRSRHTENRGTIPYTVFIDPPLSRVGMTASEAQKLNYNYVENT LFINTLPKHKINNDGRGLFKVVINKDNNEILGATLYGKGSEEIINLIKLAIDQHIPYQVL RDNIYTHPTIAESFNDLFNI >gi|312979638|gb|ACRM01000027.1| GENE 63 56472 - 56846 444 124 aa, chain - ## HITS:1 COG:no KEGG:SH2399 NR:ns ## KEGG: SH2399 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 12 124 1 113 113 136 93.0 3e-31 MGENNVKVGSKVKNKFLICDECQAVNLKSLKKKLEKLDPDAEIEIGCQSYCGPGRRKTFA FVNNRPLAALTEDELMEKVTAQLKKPRDPEEEERLRKRNEERKRRKEEQDRKLKEKLAKR KASK >gi|312979638|gb|ACRM01000027.1| GENE 64 56991 - 58067 1320 358 aa, chain - ## HITS:1 COG:SA0549 KEGG:ns NR:ns ## COG: SA0549 COG1577 # Protein_GI_number: 15926270 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 601 81.0 1e-172 MIQAKAPGKLYIAGEYAVTEPGYKSVLIAVDRFVTAAIEASNEITGTIHSKTLHYEPVTF NRNEDKIEISDVHAANQLKYVVTAIEVFEQYAKSCNIKLKHFHLTIDSNLADASGQKYGL GSSAAVLVSVIKVLNEFYEMELSNLYIYKLAVISNMRLQSLSSCGDIAVSVYSGWLAYST FDHEWVKQQMKETSVEEVLEKNWPGLHIEPLQAPENMEVLIGWTGSLASSPHLVSEVKRL KSDPIFYGEFLEQSNTCVENLIYAFKTNNIKGVQKMIRQNRSIIQQMDKEATVDIETKKL KLLCDIGERFGGAAKTSGAGGGDCGITIIDNRVDKHSIYEVWEKEGIKPLKFKIYHGQ >gi|312979638|gb|ACRM01000027.1| GENE 65 58080 - 59063 1119 327 aa, chain - ## HITS:1 COG:SA0548 KEGG:ns NR:ns ## COG: SA0548 COG3407 # Protein_GI_number: 15926269 # Func_class: I Lipid transport and metabolism # Function: Mevalonate pyrophosphate decarboxylase # Organism: Staphylococcus aureus N315 # 1 327 1 327 327 465 75.0 1e-131 MKKSGKARAHTNIALIKYWGKADENLIIPMNNSLSVTLERFYTETHVTFDDSLTEDQLIL NKEAVNAKESAKIQRYMDMIRKEAGISTYALIESDNFVPTAAGLASSASAYAALAGACNE ALDLNLSDKDLSRLARRGSGSASRSIYGGFAEWEKGYDDKTSYAHQIESDGFENDLAMIF VVINNKSKKVSSRSGMSLTRDTSRFYQYWLDHVEEDLKVTKQAIAQKDFKRMGEVIEANG LRMHATNLGAQPPFTYLVPESYEAMRIVHECREAGLPCYFTMDAGPNVKVLIEKKHQQAI VNQFLEVFNKDQIITSDITHAGVEIIK >gi|312979638|gb|ACRM01000027.1| GENE 66 59068 - 59991 1180 307 aa, chain - ## HITS:1 COG:SA0547 KEGG:ns NR:ns ## COG: SA0547 COG1577 # Protein_GI_number: 15926268 # Func_class: I Lipid transport and metabolism # Function: Mevalonate kinase # Organism: Staphylococcus aureus N315 # 28 307 1 279 279 375 69.0 1e-104 MVRRGYGESNGKIILIGEHAVTFGQPAIAIPFTSGKVKVLIESLEKGNYSAIQSDVYDGP LYDAPDHLKSLITHFVENKHVEEPLLIKIQANLPPSRGLGSSAAVAVAFIRASYDYLELP LSDKELLENADWAERIAHGKPSGIDTKTIVTNQPVWYQKGEVEILKSLDLDGYMVVIDTG VKGSTKQAVEDVHRLCDNDESYMNVIEHIGSLVYLASDAINHHSFDQLANIFNQCQDDLR TLTVSHDKIETLLEIGRQHGAVAGKLTGGGRGGSMLILTKEEVTAKTIVAAAEKAGAQHT WIEKLGG >gi|312979638|gb|ACRM01000027.1| GENE 67 60404 - 61168 627 254 aa, chain - ## HITS:1 COG:SA0546 KEGG:ns NR:ns ## COG: SA0546 COG0095 # Protein_GI_number: 15926267 # Func_class: H Coenzyme transport and metabolism # Function: Lipoate-protein ligase A # Organism: Staphylococcus aureus N315 # 1 249 25 273 278 449 87.0 1e-126 MQSFAFDDTFSESVGKDISCNVVRTWIHQHTVILGIHDSRLPFLKDGIQYLTDEIGYNAI VRNSGGLGVVLDQGVLNISLIFKGQTETTIDEAFTVMYLLICKMFENENVDIDTKEIEHS YCPGRFDLSIDGKKFAGISQRRVRGGIAVQIYLCVEGSGEERAEMMHEFYQRALKGEVTK FKYPDIKPECMASLETLLHRDIKVQDVMFQLLYAIKDLGGQLNMNPITEDEWQRYEGYFD KMIERNEKMNRSLD >gi|312979638|gb|ACRM01000027.1| GENE 68 61240 - 62229 1462 329 aa, chain - ## HITS:1 COG:SA0545 KEGG:ns NR:ns ## COG: SA0545 COG0280 # Protein_GI_number: 15926266 # Func_class: C Energy production and conversion # Function: Phosphotransacetylase # Organism: Staphylococcus aureus N315 # 1 329 1 328 328 514 84.0 1e-145 MSSLLDVLQEKLSGKNVRIVLPEGEDERVLTAATKLQATDYVTPLVLGNEEKVNTLAQDK GLDISNIQIIDPSKSDLKPELVKSFVERRKGKATEEQAQELLNNVNYFGTMLVYAGHAEG LVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKEDKQYIFGDCAINPTLESSDLAE IAVESAKSAKSFGMDPRVAMLSFSTKGSAKSDDVEKVANAVKLAQEKVESEGLDNVVVDG EFQFDAAIVPAVAEKKAPGAKIQGDANVFVFPSLEAGNIGYKIAQRLGGFEAIGPVLQGL NSPVNDLSRGCSTEDVYNLSIITAAQTLQ >gi|312979638|gb|ACRM01000027.1| GENE 69 62400 - 63149 1080 249 aa, chain + ## HITS:1 COG:SA0544 KEGG:ns NR:ns ## COG: SA0544 COG3253 # Protein_GI_number: 15926265 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 249 1 249 250 430 81.0 1e-120 MSEAAETLDGWYSLHLFYAVDWATFRLVPEDEREAMINEFKVFIENKATAREKQAGDYAL YNITGQKADILLWYLRPEMKELNEIENELNKLRIADFFIQTYSYVSVIELGNYLAGKSDE DPYENPHIKARLYPELPRTEYICFYPMDKRRNETYNWYMLPMEDRKKLMYNHGMIGRKFA GKIKQFITGSVGFDDFEWGVTLFSDDVLQFKKIVYEMRFDETTARYGDFGSFYIGHILTT DHFDQFFAI >gi|312979638|gb|ACRM01000027.1| GENE 70 63542 - 64357 887 271 aa, chain + ## HITS:1 COG:SA0543 KEGG:ns NR:ns ## COG: SA0543 COG2966 # Protein_GI_number: 15926264 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 56 271 1 216 216 341 84.0 9e-94 MYFYYNNDYILTNGDEMENINKQEHIDETLIKDVVMMAGRILLESGAEGTRVEDTMTRIA RKLGYPESNSFVTNTVIQFTLHNESYPRIFRINSRDTNLIKISQANEISRLITKGDISLE DAKERLEKIYIAKRDSSLTFKGIAAAIIAISFLYLQGGQFIDVITALLAGSIGYLVVEIL DRRLHAQFIPEFVGSLVIGIIAVFGHWLAPSGDLATIIIAAVMPIVPGVLITNAIQDLFG GHMMMFTTKSLEALVTAFGIGAGVGSILILV >gi|312979638|gb|ACRM01000027.1| GENE 71 64370 - 64822 605 150 aa, chain + ## HITS:1 COG:SA0542 KEGG:ns NR:ns ## COG: SA0542 COG3610 # Protein_GI_number: 15926263 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 150 1 150 150 226 82.0 1e-59 MFWLFNFIFSYTASLFFCVIFDAPRKLYLSCGFVGACGWMVYILFYQGLNIHTIYSSFFG SFTLGLISHYMARKKREPAIIFMVTGIIPLVPGGLAFDATKNLVLLQFGKAINTMLEVTL IAGAIALGLLFADQISKIIVSGFARRRKRI >gi|312979638|gb|ACRM01000027.1| GENE 72 64879 - 66348 1612 489 aa, chain - ## HITS:1 COG:SA0541 KEGG:ns NR:ns ## COG: SA0541 COG0531 # Protein_GI_number: 15926262 # Func_class: E Amino acid transport and metabolism # Function: Amino acid transporters # Organism: Staphylococcus aureus N315 # 1 487 1 487 494 752 85.0 0 MNDKNREIDRGDLKQNLSEKFVWAIAYGSCIGWGAFILPGDWIKQSGPIASAIGIVIGAL LMILIAVSYGALVERFPVSGGAFAFSYLSFGRYVSFFSSWFLTFGYVCVVALNATAFSLL IKFLLPNILNSGRLYTIAGWDVYITEIVIATVLLLVFMFIAIRGASVSGTLQYYFCVAMV IVVVLMFVGSFFGNNFSLSNLQPLASKELGWFNSIIMIVAIAPWAYVGFDNIPQTAEEFN FSPNKTFKLIVYSLLAAALTYVIMILYTGWLGTNNANFNGNLWLTGAETQTAFGYIGLGV LAIAIIMGIFTGLNGFLMSSSRLLFSMGRAGVMPKAFSKLHPKYKTPYVAIIFLVAITLI APWLGRTALTWIVDMSSTGVSIAYFITCLSAAKLFSYNKQSNTYGPIYKTFAILGSIVSF IFLLLLLVPGSPASLSMPSYIALGSWLVIGLIFFVVRYPKLKNMNNDELSRLILNQSERE VKEMIKDKK >gi|312979638|gb|ACRM01000027.1| GENE 73 66419 - 66790 545 123 aa, chain - ## HITS:1 COG:SA0540 KEGG:ns NR:ns ## COG: SA0540 COG2363 # Protein_GI_number: 15926261 # Func_class: S Function unknown # Function: Uncharacterized small membrane protein # Organism: Staphylococcus aureus N315 # 2 123 1 122 122 156 80.0 7e-39 MMKVFIILGALCTMMSVGTGAFGAHGLEGKLSDKYMSVWEKAVNYQMYHGLGLILIGIIS GTTSINVNWAGWLLFFGIVLFSGSLYILALTQIRILGAITPIGGILFIVGWLMLIIATFK FAG >gi|312979638|gb|ACRM01000027.1| GENE 74 66821 - 67171 374 116 aa, chain - ## HITS:1 COG:no KEGG:SH2410 NR:ns ## KEGG: SH2410 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 116 1 127 127 105 62.0 4e-22 MNKEQLIQLIEHELVQADEAQDEQQFEKHMYAIHTLTSLYSDVSKRPSKKSTHDFTNSVT SESSFSNKSSNHSAITAAEIEAMGGKVPQTMKHQTKSSNMMVTDDEIGNGESIFDF >gi|312979638|gb|ACRM01000027.1| GENE 75 67172 - 67831 823 219 aa, chain - ## HITS:1 COG:SA0538 KEGG:ns NR:ns ## COG: SA0538 COG0692 # Protein_GI_number: 15926259 # Func_class: L Replication, recombination and repair # Function: Uracil DNA glycosylase # Organism: Staphylococcus aureus N315 # 1 216 1 216 218 401 87.0 1e-112 MEWSDIFHDITTKHDFKAMHDFLEKEYTTQIVYPDRENIYQAFDLTPFEDIKVVILGQDP YHGPNQAHGLAFSVQPNAKFPPSLRNMYQELEDDIGCHRTSPHLQDWAREGVLLLNTVLT VRKGEAHSHKNIGWELFTDEVIKAISDYREDVVFILWGKPAQQKIKLIDTAKHHIIKSVH PSPLSAYRGFFGSKPYSRTNDYLKSKGKTPIQWCESGES >gi|312979638|gb|ACRM01000027.1| GENE 76 67973 - 68803 1170 276 aa, chain + ## HITS:1 COG:SA0537 KEGG:ns NR:ns ## COG: SA0537 COG0351 # Protein_GI_number: 15926258 # Func_class: H Coenzyme transport and metabolism # Function: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase # Organism: Staphylococcus aureus N315 # 1 276 1 276 276 504 92.0 1e-143 MALKKVLTIAGSDTSAGAGMQADLKTFQELNTYGMVALTAVVTMDKETWSHDVTPLPMDV FEKQLETVISIGPDAVKTGMLGTEEIIKRAGEAFEQSGAKYFVVDPVMVCKGEDEVLNPG NTDAMIKYLLPKATVVTPNLFEAGQLSGLGKLTSIEDMKKAAKIIYDQGAQHIIIKGGKA LDQDKSYDLYYDGQTYYQLTTDMFQQSYNHGAGCTFAAATTAYLANGKSPKEAVISAKAF VASAIKNGWKMNDFVGPVDHGAYNRVEHIDVDVKEV >gi|312979638|gb|ACRM01000027.1| GENE 77 69232 - 69384 75 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVLTFTATDCVEHTTTKYLEDNEDIKKAFNPSVTKLSYTRLKALEVRIFL >gi|312979638|gb|ACRM01000027.1| GENE 78 69455 - 69643 195 62 aa, chain + ## HITS:1 COG:no KEGG:SH2413 NR:ns ## KEGG: SH2413 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 56 1 56 56 81 89.0 9e-15 MIIYKQNIENGIPIYEIITKTFKTITVKFDETFSKNDIYKLLSLLESDVDNMKLSYSSHF KN >gi|312979638|gb|ACRM01000027.1| GENE 79 70083 - 70346 283 87 aa, chain - ## HITS:1 COG:no KEGG:SLGD_01665 NR:ns ## KEGG: SLGD_01665 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 1 86 1 85 86 66 41.0 2e-10 MRFSHDKVSHYLRLVNDKNELHSTIVPGQLVVDCVLAYFQIEWTQFNVKYRKAIDIDEEV ILNKVSHNEINVFGLNGEEKIVIVRKS >gi|312979638|gb|ACRM01000027.1| GENE 80 70336 - 70716 233 126 aa, chain - ## HITS:1 COG:no KEGG:SH2416 NR:ns ## KEGG: SH2416 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 121 1 121 126 112 48.0 3e-24 MLYSSNDGAYEKIEIDFNEQEVREYCEVVERTYKGVVPPLMCANVWPKFKLFQKFQQENI LLVRTTCEEFESLKCRLKYEAYLTHKSTKKFKTYIQYIYDLKIYKDNRQCIFIRQTFIKK EVNDEV >gi|312979638|gb|ACRM01000027.1| GENE 81 70685 - 71830 1618 381 aa, chain - ## HITS:1 COG:SA0534 KEGG:ns NR:ns ## COG: SA0534 COG0183 # Protein_GI_number: 15926254 # Func_class: I Lipid transport and metabolism # Function: Acetyl-CoA acetyltransferase # Organism: Staphylococcus aureus N315 # 1 379 1 379 379 495 61.0 1e-140 MNQPVIIWAKRTPFGKYGGKLKHLEPETLLMPLFEEMNSTFPKIIPDIDDVVIGNIVGNG GNIARKALLEAGLAESIPGVTMDRQCGSGLESIIYACRMVQAGAGHIYIAGGVESTSRAP WKIKRPQSVYDTQLPEFYERASFAPEDQDPSMIEAAENVAQYYHITRKQQDAFAIRSHHL THQYYENGSISNEIVSLNIKGHLFDKDESIKPTLTEQRLNRLRPLLANGTVTVGNSCMKN DGAALALVMNQETALQYGISEGMMFTDAVTIGVNPKRLGIGPVPAVTKLLKKQNLKISDI DTIELNEAFSSQVLASIQELKLNINQVNQWGGAIASGHPYSASGVALITRLLNMTHWKRG VATMGIGGGMGNAILFERWGL >gi|312979638|gb|ACRM01000027.1| GENE 82 71830 - 73212 928 460 aa, chain - ## HITS:1 COG:SA0533 KEGG:ns NR:ns ## COG: SA0533 COG0318 # Protein_GI_number: 15926253 # Func_class: I Lipid transport and metabolism; Q Secondary metabolites biosynthesis, transport and catabolism # Function: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II # Organism: Staphylococcus aureus N315 # 4 459 4 458 458 359 41.0 6e-99 MLEILNKLNHYSIEQPDMIALSFEEDVLTYQQLYTEIQQLKSVFMHLPKGSRVGLLSKSP LHNILNYFAILEQGSIPCFLDDQWSEVTIHQLIETYHIDYLVDEQHRLIKTKYSETYPTY LHEQSQVHQLLHIGFTSGTTGLPKAYYRNEPSWLASYKENEKLLRHKENILVAPGPLAHS LSLYTCIYALYTGRTFIGQTRFNATKLVSKMKQQTTNSALFLVPTMLHAITKINHDHLHL TTILSSGAKLSSSLFKRIAQTFQHANIIEFFGTSEASFISYNINREASIDSVGYIFQNVT IGLEEKDKNHIGLLNVKSNMIFSGYVNQSVVLPETWIKTGDYAYIKDNQLYLVSRQNERL IIGGKNVYPQVIEQMIKNIDGVEEAIVIGEPHPRFGEIAVLLYTGSIELEYQTVRQHIMK VLSRYDVPSKLIKVDSMQYTQSGKVARNKMRTAYVKGDFK >gi|312979638|gb|ACRM01000027.1| GENE 83 73332 - 73880 749 182 aa, chain - ## HITS:1 COG:SA0529 KEGG:ns NR:ns ## COG: SA0529 COG0794 # Protein_GI_number: 15926249 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Predicted sugar phosphate isomerase involved in capsule formation # Organism: Staphylococcus aureus N315 # 1 182 1 182 182 223 63.0 1e-58 MPTFNNYHLILEEIDNTLSHLEDNDYGRFANEVVGASRIFTAGKGRSGYVANSFAMRLNQ LGKDASAIGEATTPSIKEHDLLIIISGSGSTDHLRLLAEKAHSVGAKIALITTKKESKIG DVADTVIALPAGTKHEAEGSEQPLGSLFEQSSLIFLDSVVIGLMDAFNINEEAMQDNHAN LE >gi|312979638|gb|ACRM01000027.1| GENE 84 73882 - 74514 1126 210 aa, chain - ## HITS:1 COG:SA0528 KEGG:ns NR:ns ## COG: SA0528 COG0269 # Protein_GI_number: 15926248 # Func_class: G Carbohydrate transport and metabolism # Function: 3-hexulose-6-phosphate synthase and related proteins # Organism: Staphylococcus aureus N315 # 1 210 1 210 210 312 89.0 3e-85 MELQLAIDLLNKEEAAKLAKKVEEYVDIVEIGTPIVINEGLPAVQHLNENINNAKVLADL KIMDAADYEVSQAIKFGADVVTILGVAEDASIKGAVEEAHKHGKQLLVDMIAVQDLEKRA KELDEMGADYIAVHTGYDLQAEGQSPLESLRTVKSVIKNSKVAVAGGIKPETIKEIVAEE PDLVIVGGGIANADDPVEAAKQCREAIEGK >gi|312979638|gb|ACRM01000027.1| GENE 85 74703 - 75062 525 119 aa, chain + ## HITS:1 COG:no KEGG:SH2421 NR:ns ## KEGG: SH2421 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 119 1 119 119 219 93.0 3e-56 MEPIKAEEVQRLLTTFENKPVYLHVETTNGAYANHFDQRVFNAGTFLRNIQVTYEHAQLK GGDKDPFRVGLKLRDGGWVYVQGLTHYEINDNNEFLIAGFNYEGQLAATIEISEQPFTV >gi|312979638|gb|ACRM01000027.1| GENE 86 75076 - 75741 940 221 aa, chain + ## HITS:1 COG:SA0525 KEGG:ns NR:ns ## COG: SA0525 COG2120 # Protein_GI_number: 15926245 # Func_class: S Function unknown # Function: Uncharacterized proteins, LmbE homologs # Organism: Staphylococcus aureus N315 # 1 219 1 219 221 366 81.0 1e-101 MKDERHVLMIFPHPDDETFSSAGTIASYIENGVPVTYACLTLGQMGRNLGNPPFATRESL PYIREKELEDAMKVIGITDLRKMGLRDKTVEFEPHEQMDDMVKTLIEETNPSVIISFYPK FAVHPDHEATAEAVVRTVGRMPKEERPRLQLVAFSNDAPEILGEPDILNDISQYKEIKLK AFEAHKSQTGPFLKQLASPEVGGETQSFLEVEPYWTYHFDN >gi|312979638|gb|ACRM01000027.1| GENE 87 75769 - 76647 1114 292 aa, chain + ## HITS:1 COG:SA0524 KEGG:ns NR:ns ## COG: SA0524 COG1469 # Protein_GI_number: 15926244 # Func_class: S Function unknown # Function: Uncharacterized conserved protein # Organism: Staphylococcus aureus N315 # 1 292 1 292 292 523 88.0 1e-148 MTEFDLSTREGRWKHFGSVDPIKGTKPTTKNEMTDLQSTHKNFLFEIEEVGIKNLVYPVK IDQFQTAGTFSFSTSLNKDEKGINMSRILESVEKHYNNGLELDFDTLYQVLRTLQDNMKQ NAAGVDVSGKWFFDRYSPVTHIKAVGHADVTYGLAIHKDQVTRKEITLTATVTTLCPCSK EISEYSAHNQRGVVTVKVYLDKNSEMTDDYKEKILDAMEANASSILYPILKRPDEKRVTE RAYENPRFVEDLIRLIAADLVDFDWIDGFDIECRNEESIHQHDAFARLKYRK >gi|312979638|gb|ACRM01000027.1| GENE 88 76700 - 77074 266 124 aa, chain - ## HITS:1 COG:no KEGG:SSP0111 NR:ns ## KEGG: SSP0111 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 118 318 435 441 112 53.0 3e-24 MSNKLLTLNKYSNIHLYPNVIKKKIIELYEECDIYLDINKGKEILDSVRAAFDYNLLILA EKEITHNADVTAPNNIIISNNGKEFSSILKEIYNNKEKFKNRLIYQHKHAGAMSPSEFKK IFKK >gi|312979638|gb|ACRM01000027.1| GENE 89 77257 - 77439 66 60 aa, chain - ## HITS:1 COG:no KEGG:SERP2398 NR:ns ## KEGG: SERP2398 # Name: aap # Def: accumulation associated protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 58 13 70 2397 73 58.0 2e-12 MDFISNRLNKYSIRKFTVGTASILVGATLIFGHADNEVKAAEKSNTETIAQYNNEKNTHN >gi|312979638|gb|ACRM01000027.1| GENE 90 78124 - 78666 738 180 aa, chain - ## HITS:0 COG:no KEGG:no NR:no DGAGNDSSDGDNSEDGAGNDSSDGDNSGDGAGNDSSDGDNSEDGAGNDSSDGDNSEDGAD KGSSNEDNSKDEEGNNSLDSNNSVEGNKDSLTDNNATTDSNNTASVNNTDQTDSNNDVSE LNEDNNTSNNTHKQNNSEAKALPETGNNEQNNGTLLGSLFAAAGTLFLAGKRRKNRTDKK Prediction of potential genes in microbial genomes Time: Sun May 29 09:38:26 2011 Seq name: gi|312979637|gb|ACRM01000028.1| Staphylococcus hominis subsp. hominis C80 cont1.28, whole genome shotgun sequence Length of sequence - 502 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 500 887 ## SH2426 hypothetical protein Predicted protein(s) >gi|312979637|gb|ACRM01000028.1| GENE 1 2 - 500 887 166 aa, chain - ## HITS:1 COG:no KEGG:SH2426 NR:ns ## KEGG: SH2426 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 3 166 1342 1505 1855 180 82.0 1e-44 RNSNVPVTVTYPDGTQDHVTVPVTTNEQADNDAYQPTTDEVTKDYGDPTTEGDITGAVTI PDYPSEKGTPTITVDDPSTLPDGNTPGTVNVPVTVTYPDGTQDHVTVPVTTNEQADNDAY QPTTDEVTKDYGDPTTEGDITGAVTIPDYPSEKGTPTITVDDPSTL Prediction of potential genes in microbial genomes Time: Sun May 29 09:38:30 2011 Seq name: gi|312979636|gb|ACRM01000029.1| Staphylococcus hominis subsp. hominis C80 cont1.29, whole genome shotgun sequence Length of sequence - 2247 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 2 - 2246 2694 ## SH2426 hypothetical protein Predicted protein(s) >gi|312979636|gb|ACRM01000029.1| GENE 1 2 - 2246 2694 748 aa, chain - ## HITS:1 COG:no KEGG:SH2426 NR:ns ## KEGG: SH2426 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 748 190 937 1855 693 62.0 0 TDESSAEEKAAESTQTDESSAEEKAAESTQTDESLAEEKAAESTQTDESSAEEKAAESTQ TDESSPEEKEANDSTETNQSSLDKHETTSDVVEQPEASASIQTISEELNVSSDDTVQALE NVGVDTSNATEVEAIAALIQNDYANNSNETPVATPLNVNSATARNEETTNTLRPRMFAAM ALAADTPTNDNVASNDNNRIIEADAIANGYINSTTDATNAANTLSGRAWIVDKGTPATIS NGLTPVPEGTPVYMQWIDTDGVTSPIYKAATSNSIGSSDGSQVGPGAYAFDLREPYIDAN GKEHTYRAVSGQYYRIWIEDFKTKNGNTATMLRTAGGFLPGSYVNSVTSNNIGQFPLIGT NMQRTGIFMGVEPDGEYMTRPQSEWIHDTQGVDSPLSSNSIQGRVWLETGTGGDLANSAT GPSYNPAASDRIADGYTVVFSSLTDEGVQAYKNQVESLPKSEQVDAARTLLTDHPEYISA TVYGETNADGYYTIHFPTDTKINNDYIYGYVMNPDGEKVLGYSSFTSPIFTGANSDLSFT PQTTPVAKPAKGGWYNVNFALVPTTDTKIDIVNYNNTTQPAQPGDTVNIDLSGSQLSPLP THIEWRDSNGNIVQTTDDITSYTDGEQKGTFVVPNSAKAGDVYTVYLVSGGKDVGSDSFV VATQEKSYQPTTDEVTKDYGDPTTEGDITGAVTIPDYPSEKGTPTITVDDPSTLPDGNTP GTVNVPVTVTYPDGTQDHVTVPVTTNEQ Prediction of potential genes in microbial genomes Time: Sun May 29 09:39:02 2011 Seq name: gi|312979635|gb|ACRM01000030.1| Staphylococcus hominis subsp. hominis C80 cont1.30, whole genome shotgun sequence Length of sequence - 65871 bp Number of predicted genes - 73, with homology - 65 Number of transcription units - 35, operones - 19 average op.length - 3.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 1 - 439 613 ## SH2426 hypothetical protein - Prom 588 - 647 15.0 - Term 626 - 655 1.4 2 2 Op 1 1/0.636 - CDS 706 - 1272 811 ## COG0431 Predicted flavoprotein 3 2 Op 2 1/0.636 - CDS 1300 - 2166 1068 ## COG0561 Predicted hydrolases of the HAD superfamily - Prom 2200 - 2259 5.6 4 3 Tu 1 . - CDS 2284 - 2775 645 ## COG0590 Cytosine/adenosine deaminases - Prom 2918 - 2977 9.2 + Prom 2506 - 2565 5.2 5 4 Op 1 3/0.091 + CDS 2809 - 3456 738 ## COG1428 Deoxynucleoside kinases 6 4 Op 2 . + CDS 3449 - 4111 798 ## COG1428 Deoxynucleoside kinases + Term 4164 - 4193 0.5 - Term 4147 - 4186 3.2 7 5 Tu 1 . - CDS 4254 - 4955 1011 ## COG0546 Predicted phosphatases - Prom 5002 - 5061 9.3 - Term 5094 - 5129 -0.9 8 6 Tu 1 . - CDS 5238 - 5468 282 ## gi|228475254|ref|ZP_04059979.1| hypothetical protein STAHO0001_1924 - Prom 5581 - 5640 9.9 - Term 5586 - 5640 13.1 9 7 Tu 1 . - CDS 5694 - 5774 146 ## - Prom 5814 - 5873 4.4 + Prom 5960 - 6019 7.6 10 8 Tu 1 . + CDS 6160 - 6354 312 ## gi|228475260|ref|ZP_04059985.1| conserved hypothetical protein + Term 6382 - 6426 6.2 - Term 7247 - 7277 0.3 11 9 Tu 1 . - CDS 7367 - 8035 346 ## - Prom 8214 - 8273 9.0 + Prom 8006 - 8065 9.2 12 10 Op 1 . + CDS 8255 - 8788 214 ## gi|242372658|ref|ZP_04818232.1| hypothetical protein HMPREF0793_1100 13 10 Op 2 . + CDS 8766 - 8873 111 ## + Term 8957 - 8988 -0.7 - Term 9075 - 9104 0.5 14 11 Op 1 . - CDS 9148 - 9618 403 ## 15 11 Op 2 . - CDS 9611 - 10216 763 ## - Prom 10381 - 10440 9.1 16 12 Tu 1 . + CDS 10954 - 11100 69 ## + Term 11164 - 11213 9.0 - Term 12616 - 12654 5.0 17 13 Op 1 . - CDS 12673 - 13101 488 ## COG3728 Phage terminase, small subunit 18 13 Op 2 . - CDS 13127 - 13366 245 ## M28_Spy0998 phage terminase small subunit - Term 13382 - 13413 1.0 19 14 Op 1 . - CDS 13424 - 13636 298 ## gi|228474578|ref|ZP_04059309.1| conserved hypothetical protein 20 14 Op 2 . - CDS 13636 - 14226 690 ## SH2088 hypothetical protein 21 14 Op 3 . - CDS 14204 - 15058 667 ## COG5577 Spore coat protein - Term 15073 - 15110 1.1 22 15 Op 1 3/0.091 - CDS 15118 - 15909 696 ## COG1484 DNA replication protein 23 15 Op 2 . - CDS 15931 - 16722 765 ## COG3935 Putative primosome component and related proteins 24 15 Op 3 . - CDS 16758 - 16982 152 ## 25 15 Op 4 . - CDS 17008 - 17325 428 ## SH2095 hypothetical protein 26 15 Op 5 . - CDS 17328 - 17531 270 ## gi|228474597|ref|ZP_04059328.1| hypothetical mobile element-associated protein 27 15 Op 6 . - CDS 17589 - 17789 249 ## gi|228474667|ref|ZP_04059398.1| hypothetical protein STAHO0001_1176 28 15 Op 7 . - CDS 17864 - 18133 268 ## gi|31616153|gb|AAP55247.1| unknown 29 15 Op 8 . - CDS 18171 - 18374 250 ## COG1476 Predicted transcriptional regulators - Prom 18409 - 18468 7.8 + Prom 18445 - 18504 8.6 30 16 Op 1 7/0.000 + CDS 18524 - 19384 795 ## COG1396 Predicted transcriptional regulators 31 16 Op 2 . + CDS 19504 - 20640 791 ## COG0582 Integrase + Term 20689 - 20738 1.3 - Term 20671 - 20731 9.9 32 17 Op 1 . - CDS 20737 - 21816 1723 ## COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase - Prom 21853 - 21912 7.9 33 17 Op 2 . - CDS 21988 - 22944 1166 ## COG0451 Nucleoside-diphosphate-sugar epimerases - Prom 23093 - 23152 12.0 + Prom 23080 - 23139 11.1 34 18 Tu 1 . + CDS 23219 - 26104 3121 ## COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases + Term 26107 - 26159 3.3 - Term 26093 - 26147 7.6 35 19 Tu 1 . - CDS 26169 - 27122 1132 ## COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog - Prom 27148 - 27207 11.2 36 20 Op 1 . - CDS 27435 - 27869 583 ## COG1051 ADP-ribose pyrophosphatase 37 20 Op 2 . - CDS 27859 - 28371 200 ## PROTEIN SUPPORTED gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 - Prom 28419 - 28478 5.9 38 21 Tu 1 . - CDS 28522 - 28716 169 ## COG0156 7-keto-8-aminopelargonate synthetase and related enzymes - Prom 28766 - 28825 7.1 + Prom 28672 - 28731 10.0 39 22 Tu 1 . + CDS 28850 - 30016 1436 ## COG1473 Metal-dependent amidase/aminoacylase/carboxypeptidase + Term 30060 - 30112 16.0 - Term 30146 - 30182 4.0 40 23 Op 1 30/0.000 - CDS 30199 - 31383 1458 ## PROTEIN SUPPORTED gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 - Prom 31486 - 31545 5.8 - Term 31410 - 31460 9.5 41 23 Op 2 51/0.000 - CDS 31593 - 33674 2536 ## COG0480 Translation elongation factors (GTPases) - Prom 33701 - 33760 3.4 42 23 Op 3 56/0.000 - CDS 33796 - 34266 801 ## PROTEIN SUPPORTED gi|15923536|ref|NP_371070.1| 30S ribosomal protein S7 - Term 34287 - 34333 -0.1 43 23 Op 4 4/0.091 - CDS 34336 - 34749 713 ## PROTEIN SUPPORTED gi|228475274|ref|ZP_04059999.1| ribosomal protein S12 44 23 Op 5 4/0.091 - CDS 34839 - 35099 356 ## PROTEIN SUPPORTED gi|70727462|ref|YP_254378.1| putative ribosomal protein L7Ae-like 45 23 Op 6 . - CDS 35099 - 35149 55 ## PROTEIN SUPPORTED gi|49482774|ref|YP_039998.1| putative ribosomal protein L7Ae-like - Prom 35185 - 35244 5.1 - Term 35189 - 35239 8.0 46 24 Op 1 58/0.000 - CDS 35247 - 38867 4776 ## COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit - Term 38935 - 38967 -1.0 47 24 Op 2 3/0.091 - CDS 39030 - 42581 4270 ## COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit - Prom 42617 - 42676 4.9 - Term 42634 - 42678 2.0 48 25 Tu 1 3/0.091 - CDS 42785 - 43393 560 ## COG2813 16S RNA G1207 methylase RsmC - Prom 43489 - 43548 6.0 - Term 43423 - 43476 15.3 49 26 Op 1 47/0.000 - CDS 43565 - 43933 578 ## PROTEIN SUPPORTED gi|228475264|ref|ZP_04059989.1| ribosomal protein L7/L12 50 26 Op 2 43/0.000 - CDS 43973 - 44473 802 ## PROTEIN SUPPORTED gi|228475273|ref|ZP_04059998.1| 50S ribosomal protein L10 - Prom 44503 - 44562 10.5 - Term 44507 - 44545 7.0 51 27 Op 1 55/0.000 - CDS 44784 - 45479 1160 ## PROTEIN SUPPORTED gi|228475253|ref|ZP_04059978.1| ribosomal protein L1 - Prom 45537 - 45596 7.3 52 27 Op 2 . - CDS 45686 - 46108 695 ## PROTEIN SUPPORTED gi|27467218|ref|NP_763855.1| 50S ribosomal protein L11 53 27 Op 3 . - CDS 46101 - 46211 79 ## - Prom 46233 - 46292 4.2 54 28 Op 1 46/0.000 - CDS 46295 - 46843 736 ## COG0250 Transcription antiterminator 55 28 Op 2 1/0.636 - CDS 46861 - 47061 301 ## COG0690 Preprotein translocase subunit SecE 56 28 Op 3 . - CDS 47105 - 47248 250 ## PROTEIN SUPPORTED gi|228475268|ref|ZP_04059993.1| ribosomal protein L33 - Term 47264 - 47308 4.1 57 29 Op 1 5/0.091 - CDS 47329 - 47919 374 ## COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 58 29 Op 2 6/0.000 - CDS 47987 - 48517 598 ## COG3688 Predicted RNA-binding protein containing a PIN domain 59 29 Op 3 7/0.000 - CDS 48514 - 49263 689 ## PROTEIN SUPPORTED gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 60 29 Op 4 8/0.000 - CDS 49269 - 49676 278 ## PROTEIN SUPPORTED gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 61 29 Op 5 4/0.091 - CDS 49660 - 51060 1702 ## COG0215 Cysteinyl-tRNA synthetase 62 29 Op 6 4/0.091 - CDS 51044 - 51685 787 ## COG1045 Serine acetyltransferase 63 30 Tu 1 . - CDS 52057 - 53511 2062 ## COG0008 Glutamyl- and glutaminyl-tRNA synthetases - Prom 53653 - 53712 4.7 64 31 Op 1 2/0.182 - CDS 53792 - 54862 664 ## PROTEIN SUPPORTED gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 65 31 Op 2 6/0.000 - CDS 54885 - 56228 1369 ## COG1066 Predicted ATP-dependent serine protease - Prom 56282 - 56341 7.9 - Term 56332 - 56372 4.1 66 32 Op 1 5/0.091 - CDS 56389 - 58860 2918 ## PROTEIN SUPPORTED gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 67 32 Op 2 7/0.000 - CDS 58876 - 59874 1154 ## COG3869 Arginine kinase 68 32 Op 3 5/0.091 - CDS 59876 - 60439 244 ## PROTEIN SUPPORTED gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 69 32 Op 4 . - CDS 60471 - 60932 379 ## PROTEIN SUPPORTED gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 - Prom 61140 - 61199 7.8 + Prom 60988 - 61047 12.3 70 33 Tu 1 . + CDS 61087 - 62301 1652 ## COG1972 Nucleoside permease + Term 62302 - 62352 11.3 - Term 62299 - 62332 4.0 71 34 Op 1 16/0.000 - CDS 62338 - 62892 779 ## COG0311 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis 72 34 Op 2 . - CDS 62896 - 63783 1428 ## COG0214 Pyridoxine biosynthesis enzyme - Prom 63889 - 63948 10.6 + Prom 63772 - 63831 6.8 73 35 Tu 1 . + CDS 63879 - 65249 1159 ## COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs + Term 65317 - 65353 -0.8 - 5S_RRNA 65450 - 65564 99.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. - 5S_RRNA 65738 - 65871 95.0 # AF142677 [R:48033..48709] # 5S ribosomal RNA # Bacillus megaterium # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. Predicted protein(s) >gi|312979635|gb|ACRM01000030.1| GENE 1 1 - 439 613 146 aa, chain - ## HITS:1 COG:no KEGG:SH2426 NR:ns ## KEGG: SH2426 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 146 1 161 1855 89 53.0 3e-17 MKKKPNRRLDFLPNVQNKYSIRKFTVGAASILVGATLIFGAGQEEAKAAESDQTVTNQDN TSSPTDTTEQPSTEEKATSENITTDQPSPEEKATSENITTDESSAEEKATESTQTDELSA EEKAAESTQTDESSAEEKVAESTQTD >gi|312979635|gb|ACRM01000030.1| GENE 2 706 - 1272 811 188 aa, chain - ## HITS:1 COG:SA0518 KEGG:ns NR:ns ## COG: SA0518 COG0431 # Protein_GI_number: 15926238 # Func_class: R General function prediction only # Function: Predicted flavoprotein # Organism: Staphylococcus aureus N315 # 1 188 1 188 188 312 82.0 3e-85 MKGLIVVGSAQVGSHTNALAKYLTGQFDNHDVDVDIFDLAERPLNQLDFSGTTHSTEEIK ANTKEFQDKAMEADFLIFGTPNYHGSYSGILKNALDHINMDYVKMKPVGLIGNSGGIVSS EPLSHLRVIVRSLLGIAVPTQIATHDSDYAKLEDGTLYLNDEEFQLRAKLFVDQIVSFVN NSPYEHLK >gi|312979635|gb|ACRM01000030.1| GENE 3 1300 - 2166 1068 288 aa, chain - ## HITS:1 COG:SA0517 KEGG:ns NR:ns ## COG: SA0517 COG0561 # Protein_GI_number: 15926237 # Func_class: R General function prediction only # Function: Predicted hydrolases of the HAD superfamily # Organism: Staphylococcus aureus N315 # 1 288 1 288 289 396 72.0 1e-110 MIKLIATDMDGTLLNAAHEISEENINAIKYAQSKGITVVIATGRAFYEASTPMAETDLKV PYICLNGAEVRDESFNIMNTSHLNHELVERIKAILDREDVYYQVYTNRGIYTEDPTRDLD IYLDIARNAGQQGDVEKIKAGIQKRIDNGTLKIVDNYKDIEDIPGELIMKVLAFNPDFEK IERIGKELSAISSLAVSSSSRGNLEITHSDAQKGIALETIANQLHIDLQDVMALGDNLND VSMLERVGYPVAMDNAMPEVKAIAKLVTDTNEHSGVGKAIMKVLTEEK >gi|312979635|gb|ACRM01000030.1| GENE 4 2284 - 2775 645 163 aa, chain - ## HITS:1 COG:SA0516 KEGG:ns NR:ns ## COG: SA0516 COG0590 # Protein_GI_number: 15926236 # Func_class: F Nucleotide transport and metabolism; J Translation, ribosomal structure and biogenesis # Function: Cytosine/adenosine deaminases # Organism: Staphylococcus aureus N315 # 1 156 1 156 156 263 79.0 1e-70 MTNDEFYMKCAIEEAKKARQLGEVPIGAVIVKDNEIISRAHNLRETLQQPTAHAEHLAIE RAAKVIGSWRLEDCTLYVTLEPCVMCAGTVVMSRIPRVVYGAMDPKGGCSGSLMDLLQQP QFNHRAIVEQGVLEEECSNLLRQFFRDLRAKKVKRNTSSYKKR >gi|312979635|gb|ACRM01000030.1| GENE 5 2809 - 3456 738 215 aa, chain + ## HITS:1 COG:SA0515 KEGG:ns NR:ns ## COG: SA0515 COG1428 # Protein_GI_number: 15926235 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Staphylococcus aureus N315 # 11 215 1 205 205 296 74.0 2e-80 MSILTFGDVIMNKPFIAIEGPIGVGKSSLTHKISQTFNYYEENEIINENPFLSDFYDDIS KWSFQTEMFFLCNRYKQAQDIAKINQGVVSDYHIYKNRIFARNTLNESEFDKFNRIFNIL TEDLELPNMIIFLDADLDVLKRRIAKRNRSFEHQIEDSYLLNLKKDYLSFYETLKNEGAN VILIDTSDLDFVQNESDYQLILNQIKPMIGDIKYE >gi|312979635|gb|ACRM01000030.1| GENE 6 3449 - 4111 798 220 aa, chain + ## HITS:1 COG:SA0514 KEGG:ns NR:ns ## COG: SA0514 COG1428 # Protein_GI_number: 15926234 # Func_class: F Nucleotide transport and metabolism # Function: Deoxynucleoside kinases # Organism: Staphylococcus aureus N315 # 1 220 1 220 220 395 87.0 1e-110 MNNYGIPQNAIITIAGTVGVGKSTLTQALADKLNFRTSFENVDHNPYLDKFYNDFERWSF HLQIYFLAERFKEQKRMFEYGGGFIQDRSIYEDVDIFAKMHEEQGTMSKEDFKTYSELFE AMVMTPYFPKPDVLIYLDCDYDEVIDRIHQRGRDMEMNTDPVYWKKLFKRYENWINNFNA CPVVRVNINEYDIHENPDSLDPIIDKIAHIIQTYRNVDHR >gi|312979635|gb|ACRM01000030.1| GENE 7 4254 - 4955 1011 233 aa, chain - ## HITS:1 COG:SA0513 KEGG:ns NR:ns ## COG: SA0513 COG0546 # Protein_GI_number: 15926233 # Func_class: R General function prediction only # Function: Predicted phosphatases # Organism: Staphylococcus aureus N315 # 1 226 1 226 227 285 63.0 7e-77 MEWILFDKDGTLIEFDHSWEKIGVRLVNSFLDTFPVANKEATLRKLGVVKDTISPDSVMG SGSLDEIVHAFNDESGKDVSKWTRDTSQTLVDSREPENNWIDGVYDMIQSLRQEGYKIGI VTSDSEKGVTQFLEETHSKDAFDLVISTEAHAAEKPNPEVLKPLFDHYDVKPEDVAIVGD TNNDMKTKVNARLGLAIGVLSGIAKKEELVDADYVIETAVSVPEVLKKYTQNN >gi|312979635|gb|ACRM01000030.1| GENE 8 5238 - 5468 282 76 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475254|ref|ZP_04059979.1| ## NR: gi|228475254|ref|ZP_04059979.1| hypothetical protein STAHO0001_1924 [Staphylococcus hominis SK119] # 1 76 1 76 76 132 98.0 8e-30 MTEAKYSNNEIETMSDFHKKKHRDTCCIAPKIKYHEDKFVFSPVSDDTETSNIKTFITEC KNCGKVEFFNIAPVRL >gi|312979635|gb|ACRM01000030.1| GENE 9 5694 - 5774 146 26 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLDIFSFIKKVYDLVSGILVNGEPRN >gi|312979635|gb|ACRM01000030.1| GENE 10 6160 - 6354 312 64 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475260|ref|ZP_04059985.1| ## NR: gi|228475260|ref|ZP_04059985.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 64 1 64 64 70 100.0 5e-11 MLIVIFILFGIGIGLFIFSFFLAQNEGLAYKTISRGFSALFVSLGILALMGYLINFISSH YLNI >gi|312979635|gb|ACRM01000030.1| GENE 11 7367 - 8035 346 222 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MKDVFIKYWSLLIIGSAIVIFCLATIMQNIFKIELKDSLSIIIAFISIFATFGGAYIGAK VSGENAIKINQNSIENEHRKNSFPLKMEIVNYIEDIQENTTRKLELKRFNGKKIHTGIKK DNPDLFPDELNEFFKYFYDNKESIINKLNEFYINKNMYSLKESNDGFYDYLNEYKFLMYK FKYIWINVEIRPHMNFKVTKNMYNMEVKKFMKITQKIINYKL >gi|312979635|gb|ACRM01000030.1| GENE 12 8255 - 8788 214 177 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|242372658|ref|ZP_04818232.1| ## NR: gi|242372658|ref|ZP_04818232.1| hypothetical protein HMPREF0793_1100 [Staphylococcus epidermidis M23864:W1] # 34 169 56 187 201 93 41.0 4e-18 MIDKIKKYSIYILFLLLAPIVVLSLLLCLLALKINSSLYSILFLVLILSIIYYCIYRKDF KKNDGDFFHFVNKGIVQFILTILPITLTLLNIGFTLDQKNEEKKQKNEEIIKCIKTNEYK DSFECQINKKNLENELTLLDNLSVYSLLLISSFGVLLVIHNIFKNKYNKIDEKKFKK >gi|312979635|gb|ACRM01000030.1| GENE 13 8766 - 8873 111 35 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKKNLKNNIDKNTKRLIAFDQFKINNPYEDVKKYF >gi|312979635|gb|ACRM01000030.1| GENE 14 9148 - 9618 403 156 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSNNERRSKISQKELANKLNELISKEKQNKSKNVPNKYIQRQISKNQKQPLGDKRQDITS HKEMVNNHIAKELEFKRVAKNWSIIIFLCISLIIIANLIILLYWNPAHLSDKVIIVLTTV TFANLFTIIMVIFKYVFSPTKEMLDYNSNFYNHEDD >gi|312979635|gb|ACRM01000030.1| GENE 15 9611 - 10216 763 201 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MNELVRKSKKLAIEFVGIIREIANDYDIYDVINNLEDFIEQFDVKVFYSNMEGFDKPHEI SGYSLVNDEGKPEIVLNVNDSEQRQRFTMAHEFGHIVMHWNWLLKKEEGTNLKKDNYEVL FRKTSYSTFDNDLKEIQANEFAAELLLPHELIIKGIGDVEILNSPIDLDSMKQRVALAFN VSSSFANTQLVKIKRGEFEDE >gi|312979635|gb|ACRM01000030.1| GENE 16 10954 - 11100 69 48 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKAFKMSRLPKHTVFLLEKKYLTERKESPVRQSQSLLLHTNFYLATLL >gi|312979635|gb|ACRM01000030.1| GENE 17 12673 - 13101 488 142 aa, chain - ## HITS:1 COG:L36274 KEGG:ns NR:ns ## COG: L36274 COG3728 # Protein_GI_number: 15672009 # Func_class: L Replication, recombination and repair # Function: Phage terminase, small subunit # Organism: Lactococcus lactis # 4 132 1 128 147 79 37.0 2e-15 MKSLTLKQKQFADEYIRTGNAYQSAINVGYSKKYAKARSHKMLENVGINQYIDDNLEIIQ KESIAKTDEIMRYLTRVLRGEEKEEILVYVGDGMQEIQTIQPSAKDRIKAAELLGKRYRM WTDKHEVEIATPIFIDDVPEDD >gi|312979635|gb|ACRM01000030.1| GENE 18 13127 - 13366 245 79 aa, chain - ## HITS:1 COG:no KEGG:M28_Spy0998 NR:ns ## KEGG: M28_Spy0998 # Name: not_defined # Def: phage terminase small subunit # Organism: S.pyogenes_MGAS6180 # Pathway: not_defined # 1 79 39 117 181 71 43.0 1e-11 MKKLTTKQRRFADEYIETGNPYYSAVKVGYSEVYARDNALKLLENISVKSYIHERLEEIK NDNMTEKYGVMRYLTRLIK >gi|312979635|gb|ACRM01000030.1| GENE 19 13424 - 13636 298 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474578|ref|ZP_04059309.1| ## NR: gi|228474578|ref|ZP_04059309.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 70 1 70 70 65 78.0 9e-10 MARKHNLDKVSNHIMLETNLSEEDRDKLLDVVEAQINQNNDEQRRNEAKQQSKSSKSLLQ MARENRVIKG >gi|312979635|gb|ACRM01000030.1| GENE 20 13636 - 14226 690 196 aa, chain - ## HITS:1 COG:no KEGG:SH2088 NR:ns ## KEGG: SH2088 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 196 1 196 196 222 76.0 7e-57 MKTAKYFDEYNEYVIGQRESIDKLEKERQELIQRIKEDKAKYKELIANLQDNEADELYTT FDSNEKKLKALEKRLSTKKEVFDEARRKKAIELIKHQKEVPKLYKKDKEKLLAKFYPIME EYNKVLKEIDELNVKYENEYLRYANPYYNENFNEDDEVKRELRNHFRDILYSPFISRMDL PIIDRFNNKLKFRGAK >gi|312979635|gb|ACRM01000030.1| GENE 21 14204 - 15058 667 284 aa, chain - ## HITS:1 COG:SA1822 KEGG:ns NR:ns ## COG: SA1822 COG5577 # Protein_GI_number: 15927590 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Spore coat protein # Organism: Staphylococcus aureus N315 # 20 153 19 152 175 62 34.0 1e-09 MASLKQAYQQDTDAEEIKMISDDTLFTVYNPKFIEDKKQMIEDYIETLYERNTPNMVCDP VTQMVYYQSQNLESLVMYIIEEKKKLNAFIRKSNRNLYHLCAVLEGYTKQEQIFIKNYIR NTKVRDNELIRRFKIDLYNYVQAKREKRQEEHNKKSFNAYLVDKDEVRKKQQKKKINNGY GLTLNQEKELRLIKEHEAERNTDMGAFIDSIQQMNNDELLSYVLDRHEFNIDSYNLKILT DAALYRFPLKQRKQAYNHLKAITRVLTNNPIEKRLKRYENSEIF >gi|312979635|gb|ACRM01000030.1| GENE 22 15118 - 15909 696 263 aa, chain - ## HITS:1 COG:lin1245 KEGG:ns NR:ns ## COG: lin1245 COG1484 # Protein_GI_number: 16800314 # Func_class: L Replication, recombination and repair # Function: DNA replication protein # Organism: Listeria innocua # 8 260 17 282 287 105 29.0 1e-22 MKSLETLMNNNKKRGKILKVEENLFCEGCKNRYDYYEIEKSDGTIQEIKSGCDCEAKQMA EQKVKEYKAKIKRSEIDRMFNKSKVNDDLQSATFDNYIPRNESQQKAKDTMQRYAKNFNL DNKQSIMLRGSFGLGKSALAMATIKEIKEKGYTVLFYDITELIALFRDTMSKTAKYTETE LINRIKACDVLVIDDVTPNLTDFEKGKLFSVINARVNKHNIITTNNTNKELTADKMLTKI YSRMMMNTTVIEVEGTDYRLTKK >gi|312979635|gb|ACRM01000030.1| GENE 23 15931 - 16722 765 263 aa, chain - ## HITS:1 COG:SP1575 KEGG:ns NR:ns ## COG: SP1575 COG3935 # Protein_GI_number: 15901417 # Func_class: L Replication, recombination and repair # Function: Putative primosome component and related proteins # Organism: Streptococcus pneumoniae TIGR4 # 144 248 111 215 225 69 31.0 6e-12 MTTYRVKKESGNFVTIHKGFITDDRLSAKAKGILLYLLSRPDDWQIYTLEVVKHMNDGQK SINSGINELIKVGYVERSRKRKDNGDFNGYDYVVYEKPKNIREMPFGENAKRENAKGHTT NINNTYKDLTNNYDTEINSSSSASTTKQQPPSHSYSNVFNFYQENGFGILQPFVVDQIDN WIKDFNGNENIVIEALKEAATNNVCKWSYANSILKSWYQDGIKSIDDIEARRKQREASKN KVQQSTKDTDDDWLNSPERQQYL >gi|312979635|gb|ACRM01000030.1| GENE 24 16758 - 16982 152 74 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MTNKIKCSKGYGVITQSVMSSKDISIEAKALYCYYMAHVGDNIIPSATQTCNDLQISYKR FKTLRTQLFERGFL >gi|312979635|gb|ACRM01000030.1| GENE 25 17008 - 17325 428 105 aa, chain - ## HITS:1 COG:no KEGG:SH2095 NR:ns ## KEGG: SH2095 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 87 1 87 101 112 60.0 3e-24 MNWEIKNILSDMEIIKEKINDVMTSFTWFDEEYFTHEPNHVLNKNEILAHGYRYHEHRIQ NTQTIDLMCMYLKEFDSLLEQFKELDKKEPLSESDQTTDNEQLKN >gi|312979635|gb|ACRM01000030.1| GENE 26 17328 - 17531 270 67 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474597|ref|ZP_04059328.1| ## NR: gi|228474597|ref|ZP_04059328.1| hypothetical mobile element-associated protein [Staphylococcus hominis SK119] # 3 67 2 66 66 73 72.0 5e-12 MDNQDVRVIKEIYELLNSAINDKRQIYVHLVEEGNQKWKETLNREQQLQFICELVMQQIE NNFEWEE >gi|312979635|gb|ACRM01000030.1| GENE 27 17589 - 17789 249 66 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228474667|ref|ZP_04059398.1| ## NR: gi|228474667|ref|ZP_04059398.1| hypothetical protein STAHO0001_1176 [Staphylococcus hominis SK119] # 1 60 1 60 60 65 65.0 1e-09 MIRFLNELAYICVITIFLNMYSELHYALVFFLFGSMIAAIKYDIRDVEYSYLYKAYREHL QDSKRI >gi|312979635|gb|ACRM01000030.1| GENE 28 17864 - 18133 268 89 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|31616153|gb|AAP55247.1| ## NR: gi|31616153|gb|AAP55247.1| unknown [Staphylococcus aureus] # 1 89 1 89 89 107 85.0 2e-22 MAEQQPILSESASLELANGILKLAEQIAQRKIEQQQKRWATQTELRKLYRCTHSDITEWE RLGLTKRKQGRSYYYDLKEVEEFLLSQKK >gi|312979635|gb|ACRM01000030.1| GENE 29 18171 - 18374 250 67 aa, chain - ## HITS:1 COG:SP1131 KEGG:ns NR:ns ## COG: SP1131 COG1476 # Protein_GI_number: 15900997 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 4 67 5 68 117 81 68.0 4e-16 MTINKIKGYRNYLNLTQEGMGQKLGISKQSYYNKETNKSSFTDEEKKKFKELLLPYFPNI TMEDIFF >gi|312979635|gb|ACRM01000030.1| GENE 30 18524 - 19384 795 286 aa, chain + ## HITS:1 COG:L7043 KEGG:ns NR:ns ## COG: L7043 COG1396 # Protein_GI_number: 15673929 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 5 70 4 69 235 65 51.0 1e-10 MYSYNKEQVGKRIKSIRQQKGLTQESFGKLFGASKGNVATWEKGISLPNASRLREIADLV SITVEELLYGEFVDNFQLVKLLNNNPNELENMIKSNIKAFFNLLDDFEYYEYTIVIPKSQ RFYFVKLQNRILLAISLENKSTYQEKDNKDKLISRMTDVVMNNLQNDNDSMNEMLYKSDI INNLVALINLESKEFKNIILYLIDILETIGKQYPKILSFMLNRKLDILSNEINDYFVINN TTKNFKENNDDEIFDENLVIDTVSYEKYKYLQNQILDLKKYINKNF >gi|312979635|gb|ACRM01000030.1| GENE 31 19504 - 20640 791 378 aa, chain + ## HITS:1 COG:L55605 KEGG:ns NR:ns ## COG: L55605 COG0582 # Protein_GI_number: 15673415 # Func_class: L Replication, recombination and repair # Function: Integrase # Organism: Lactococcus lactis # 2 378 3 359 359 197 34.0 2e-50 MIKKYKKKDGSTAYMFVAYLGVDPITRKQKRTTRRGFKTEREAKIAEAKLQTEVQSKGFL NNDITTFKQVYELWLEQYKCTVRESTFVRVSNMFKLKILKEFDNMPIQSITTPYCQKVIN YWIENYKDFRNIKVYAANVFEYAVMLKIIHENPFKYTKLPKRTRNKSNEHLTYYSSDELK QFLELIKDDLMYYAMFRLLGFTGMRRGELMALTWEDINFKNKTISIDKTVTIGLNSKEII QPPKTHSSIRVISIDDRTISILKNWRVEQRKLCLMHGHNTSNKSQCLFTNLRTNKRLQVQ HPNKAMDKICKKYNFKKIKIHGFRHTHCSLLFEAGLSIQEVQDRLGHGDINTTMDVYAHI TEKQREKVAEKFANYISF >gi|312979635|gb|ACRM01000030.1| GENE 32 20737 - 21816 1723 359 aa, chain - ## HITS:1 COG:SA0512 KEGG:ns NR:ns ## COG: SA0512 COG0115 # Protein_GI_number: 15926232 # Func_class: E Amino acid transport and metabolism; H Coenzyme transport and metabolism # Function: Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase # Organism: Staphylococcus aureus N315 # 1 358 1 358 358 594 84.0 1e-170 MSEKVKFEQRDTLKEKPEGNLGFGQYFTDYMLSVDYDEEKGGWQELKIVPYAPFEISPAA QSLHYGQAVFEGLKAYKHNGEVVLFRPDQNFKRINDSLARLEMPKVDEELLLEGLKQLVD IERDWVPEGEGQSLYIRPFVFATEGILGVRASKKYKLLIILSPSGAYYGGDTLKSTKIYV EDEYVRAVRGGVGFAKVAGNYAASLLAQTNANNLGYDQVLWLDGVEQKYVEEVGSMNIFF VENGKLVTPALNGSILPGITRKSIIELAKELGYEVEERKVSIDELFEAYDKGELTEVFGS GTAAVISPVGTLKYEDREIVINHNEPGEITKKLYDTYTGIQSGKLEDKHGWRVIVPKYK >gi|312979635|gb|ACRM01000030.1| GENE 33 21988 - 22944 1166 318 aa, chain - ## HITS:1 COG:SA0511 KEGG:ns NR:ns ## COG: SA0511 COG0451 # Protein_GI_number: 15926231 # Func_class: M Cell wall/membrane/envelope biogenesis; G Carbohydrate transport and metabolism # Function: Nucleoside-diphosphate-sugar epimerases # Organism: Staphylococcus aureus N315 # 1 315 1 315 321 508 76.0 1e-144 MKRIVITGALGQIGTELVLKCRKLYGKNNVLATDIKELEPHSLINDGPFELLDVTDRDAM MAVVEDFRADTLMHMAALLSATAEKNPLQAWDLNMGGLMNALETARMYDLHFFMPSSIGA FGGSTPKKNTPQNTIQQPTTMYGINKVTGELLCQYYFKKFGVDTRSVRFPGLISHVKEPG GGTTDYAVEIYFEAVRHGHYTSYIAKNTYMDMMYMDDAVDAIIQLMEADSKTLVTRNGYN LSAMSFEPEMIKKEIQKHIPEFTLDYDVDPVRQMIADTWPDNIDTSYSRKEWGFNPKYHL AKMTETMIRTIKENEEKT >gi|312979635|gb|ACRM01000030.1| GENE 34 23219 - 26104 3121 961 aa, chain + ## HITS:1 COG:SA0022 KEGG:ns NR:ns ## COG: SA0022 COG0737 # Protein_GI_number: 15925728 # Func_class: F Nucleotide transport and metabolism # Function: 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases # Organism: Staphylococcus aureus N315 # 107 765 25 693 772 625 52.0 1e-178 MKKYFVSLLLIFFIAFGLLSLTSYAAEVPDTASTLQNDAISSQSKAMTSSPQEKTSQNHQ TTFSEKTTSEKATTENVSTIKTSQDNVSTQNKTQIVEQHISSPQTNSTSSTTVTSQTSSE VPTQEKASQTTQTSSAQLQTSKENITAPKAMSQKTSSTSSVQTSRPSTNVSTQKATLTQT SKSQDTTTLNHKNITTQTTSNTKATTPSSTTHAILHTNDIHGRFVEEDGRVIGMAKLKGL KDQIQPDLVLDAGDAFQGLPVSNKSKGEEMAKAMNSVGYDAMTIGNHEFDFGYDQLMKLQ QQLNFPMLSSNIYKDGHLIFKPSTIITKNNIRYGVVGVTTPETKTKTSPTAVNDIEFKDP LPSVTQAMNDIKDNVDVFVILSHLGVDKSTRNIWRSDYLIDQLTQSKLFSHPIFVVDGHS HTVIEHGRDYGANNVLTQTGTALANVGRIDFDVHNGTINNVNASLINVADTKEVPTDSQI EAQTRQANNEFLKETSTVIIPNNPVTLNGEREHVRTQETNLGNLITDAMEAYAEKNFSHR PDFAVTNGGGIRASIQTGQVTENDVITVLPFGNLISQIEVKGSDVKQAFEHSLSSTTDIQ DGKKVLAPSGGFLQVSNSIRVYFNLDKESGQRVSAIKILNKSTGKYENLDSNRTYYVTTN DFTAHQGDGYDMFGGKREEGISLDAVVSQYIKEADLSSYDTVDAVRIINGQPEIDEQTDD ATTTQPHDQTTSSQSNTHLEGAQPKHPGKVSQPNKKDNDHKVVAIHESPHPCINHHKSIA PKHHSNDMANTNHKHLTSTHTQQCHTHAIAIDKHKNYTGTHAHINHYDVAHHPIKTMLSL ENKLTQESQYHNIAHLIGPYQYQSNQELTSSKACHTNKGSRAYTLPLKHGTDSNTHHDSI HVVTINDSEATSELTGCYTNKHHVQLPSTGKKEANLEHGIAILLVTTGAGLIYLRQRKKS A >gi|312979635|gb|ACRM01000030.1| GENE 35 26169 - 27122 1132 317 aa, chain - ## HITS:1 COG:MTH1495 KEGG:ns NR:ns ## COG: MTH1495 COG2423 # Protein_GI_number: 15679492 # Func_class: E Amino acid transport and metabolism # Function: Predicted ornithine cyclodeaminase, mu-crystallin homolog # Organism: Methanothermobacter thermautotrophicus # 2 313 14 326 339 184 36.0 2e-46 MIVLNEQDQQNLLDMKEVIEEVGHALQVFSEGKTETPLRYVLPFNKENRYLVMPALSDEL NIVGIKTVTFAPNNPKLDKKTITGSVLLSDYDTGETLAVLDGSYLTKIRTGAISGVATKY LARENAKTLCVIGAGDQAEGLIAAILAVRDIEMLHISSRTRAKAETLAEFVKQTYHVSTK VFDEADQAMENADIVVTATNSNKPVYSHSLHPGVHLNAVGSFKPEMQELPSETMLIANKI VVESTEAAMEETGDLKVPLEEGILTERSLHGELGDIVSGKISGRDDEEEVTVFKSVGLAI VDIVVAQYFYKKAQQTN >gi|312979635|gb|ACRM01000030.1| GENE 36 27435 - 27869 583 144 aa, chain - ## HITS:1 COG:SSO2278 KEGG:ns NR:ns ## COG: SSO2278 COG1051 # Protein_GI_number: 15899046 # Func_class: F Nucleotide transport and metabolism # Function: ADP-ribose pyrophosphatase # Organism: Sulfolobus solfataricus # 19 74 37 99 164 62 57.0 3e-10 MEGETVKDLKVVYALIQNQERKVLLVNNTDGGGWSLPGGKVEKEETLIEALKREVMEETG LNAKIGDIVSINEGKSTQMNVHTLFIMFKATIKNEVIDIQMKDEISETKWMTIEEADQNL TYYNHSLKVFLNNKATYYNEGVID >gi|312979635|gb|ACRM01000030.1| GENE 37 27859 - 28371 200 170 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|50365462|ref|YP_053887.1| acetyltransferase of 30S ribosomal protein L7 [Mesoplasma florum L1] # 2 165 3 169 170 81 30 1e-14 MLELRKLEYKDKESLIRYLQYWYDNNEKIVPSNVDVAHYQSFQQMVEQLNHPPVNMNTVP STTLFYFKNDDIVGAVNIRHELNDKLKNIGGHVGYGVAKPYRGNGYASSMLEEALNRLNK MGIHKVLMTCNPYNYASQKVIKKHGGYEINSYIKKNGQPVSRFEIPNDGR >gi|312979635|gb|ACRM01000030.1| GENE 38 28522 - 28716 169 64 aa, chain - ## HITS:1 COG:SA0508 KEGG:ns NR:ns ## COG: SA0508 COG0156 # Protein_GI_number: 15926228 # Func_class: H Coenzyme transport and metabolism # Function: 7-keto-8-aminopelargonate synthetase and related enzymes # Organism: Staphylococcus aureus N315 # 17 63 198 245 383 60 70.0 9e-10 MIMMIINDDESIIKENDETHGFVIDKGAGIVKHLNLQDKIDFQIGTLSKAIDGVGDYVAR TKKC >gi|312979635|gb|ACRM01000030.1| GENE 39 28850 - 30016 1436 388 aa, chain + ## HITS:1 COG:SA0507 KEGG:ns NR:ns ## COG: SA0507 COG1473 # Protein_GI_number: 15926227 # Func_class: R General function prediction only # Function: Metal-dependent amidase/aminoacylase/carboxypeptidase # Organism: Staphylococcus aureus N315 # 1 388 1 388 391 673 79.0 0 MFDWFQLASEKENRMIQMRRYMHQYPEPSFEETWTHNYILNQLSHLDCEIVSPVGRNGIK ATFKGKENGPTIAFRADFDALPVQELNEVPYKSKNDGFMHACGHDGHTAILLGVAEIVHE HRHLLKGNVVFIFQYGEEIMPGGSQEMIDDGCLNDVDKIYGTHLWSGYPTGTIYSRPGAI MASPDEFSITIKGKGGHGAKPHETIDPIVIMAEFILSAQKIISRTIDPVKEAVLTFGMVQ AGSSDSVIPDSAFCKGTVRTFDTKLQAHVQEKMDKLLQGLALANDITYDMEYIRGYLPVH NHEAAYETVKQAANELHLRFNKSELMMIGEDFSHYLKVRPGAFFLTGCGNADKGITAPHH NPHFDIDEAAFKYAASEFLKILELESVF >gi|312979635|gb|ACRM01000030.1| GENE 40 30199 - 31383 1458 394 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119502908|ref|ZP_01624993.1| Ribosomal protein S19 [marine gamma proteobacterium HTCC2080] # 1 394 1 407 407 566 68 1e-160 MAKEKFDRSKEHANIGTIGHVDHGKTTLTAAIATVLAKNGDTVAQSYDMIDNAPEEKERG ITINTAHIEYQTDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHI LLSRNVGVPALVVFLNKVDMVDDEELLELVEMEVRDLLSEYDFPGDDVPVIAGSALKALE GDAQYEEKILELMQAVDDYIPTPERDSDKPFMMPVEDVFSITGRGTVATGRVERGQIKVG EEVEIIGIKETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDVQRGQVLAAPGSIT PHTKFKADVYVLSKDEGGRHTPFFSNYRPQFYFRTTDVTGVVNLPEGTEMVMPGDNVEMT VELIAPIAIEDGTRFSIREGGRTVGSGVVTEIFE >gi|312979635|gb|ACRM01000030.1| GENE 41 31593 - 33674 2536 693 aa, chain - ## HITS:1 COG:SA0505 KEGG:ns NR:ns ## COG: SA0505 COG0480 # Protein_GI_number: 15926225 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Translation elongation factors (GTPases) # Organism: Staphylococcus aureus N315 # 1 693 1 693 693 1290 96.0 0 MARDFSLKNTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRG ITITSAATTASWQGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW RQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQANAAPIQLPIGAEDEFEAIIDLVE MKCFKYTNDLGTEIEEIEIPEDHKERAEEARSNLIEAVAETSDELMEKYLGDEEISVAEL KNAIRQATTDVEFYPVLCGTAFKNKGVQLMLNAVIDYLPSPLDVKPIVGHRAENPDEEVI AKADDNGEFAALAFKVMTDPYVGKLTFFRVYSGTLTSGSYVKNSTKNKRERVGRLLQMHA NSRQEIDTVYSGDIAAAVGLKETGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSKADQ DKMTQALVKLQEEDPTFHAHTDEETGQVIIGGMGELHLDILVDRMKKEFNVECNVGAPMV SYRETFKQSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGVVPREYIPS VEAGLKDAMENGVLAGYPLIDVKAKLFDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVI LEPMMKVTIEMPEEYMGDIMGDVTARRGRVDGMEPRGNAQVVNAYVPLSEMFGYATSLRS NTQGRGTYTMYFDHYAEVPKSIAEEIIKKNKGE >gi|312979635|gb|ACRM01000030.1| GENE 42 33796 - 34266 801 156 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|15923536|ref|NP_371070.1| 30S ribosomal protein S7 [Staphylococcus aureus subsp. aureus Mu50] # 1 156 1 156 156 313 100 2e-84 MPRKGSVPKRDVLPDPIHNSKLVTKLINKIMLDGKRGTAQRILYSAFDLVEQRSGRDALE VFEEAINNIMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWLVNYARLRGEKTMEDRL ANEILDAANNTGGAVKKREDTHKMAEANKAFAHYRW >gi|312979635|gb|ACRM01000030.1| GENE 43 34336 - 34749 713 137 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475274|ref|ZP_04059999.1| ribosomal protein S12 [Staphylococcus hominis SK119] # 1 137 1 137 137 279 100 3e-74 MPTINQLVRKPRQSKSKKSDSPALNRGFNSKKKQFTHLNSPQKRGVCTRVGTMTPKKPNS ALRKYARVRLSNNIEINAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGALDTSGV DGRRQGRSLYGTKKPKN >gi|312979635|gb|ACRM01000030.1| GENE 44 34839 - 35099 356 86 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|70727462|ref|YP_254378.1| putative ribosomal protein L7Ae-like [Staphylococcus haemolyticus JCSC1435] # 1 86 1 86 86 141 82 8e-33 MSNEKVARFNKQHFVVGLKQTLKALKKDQVTSLIIAKDVEIYLLAQVFSQINHKSIPITY FESKSALGKAVGINVNATIVALLNEN >gi|312979635|gb|ACRM01000030.1| GENE 45 35099 - 35149 55 16 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|49482774|ref|YP_039998.1| putative ribosomal protein L7Ae-like [Staphylococcus aureus subsp. aureus MRSA252] # 1 15 3 17 103 25 80 9e-32 SVIIVKVDASRTLEDI >gi|312979635|gb|ACRM01000030.1| GENE 46 35247 - 38867 4776 1206 aa, chain - ## HITS:1 COG:SA0501 KEGG:ns NR:ns ## COG: SA0501 COG0086 # Protein_GI_number: 15926221 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta' subunit/160 kD subunit # Organism: Staphylococcus aureus N315 # 1 1206 1 1207 1207 2316 95.0 0 MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM SPRSLEEVIYFASYVVVDPGPTGLEKKSLLSEAEFREYYDKYPGQFVAKMGAEGIKDLLE EIDLDEELKALRDELESATGQRLTRAIKRLEVVESFRNSGNNPSWMILDVLPIIPPEIRP MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPNLKMYQCGLPKE MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIKEHPVLLNRAPTLHR LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL NPKDGKPVVTPSQDMVLGNYYLTLERKDAVNTGIIFNDTNEVLKAYANGYVHLHTRIGLH ARSLNNPTFTEEQNNKILATSVGKVIFNEIIPDSFAYINEPTQENLEDKTPDKYFVDSTQ LGEGGLKAYFEEQELTAPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI TVGVSDIVVLPDKQQILDEHEKLVERVSKQFNRGLITEDERYNAVVEIWTDAKDQIQGEL MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI EPFVERIEGRYSKETIRHPETNEIIIRPDELITPEIAKKITDAGIEKMYIRSAFTCNTRH GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVIKGANETRSYLASGTSRIKVEIGQ SVERGEVLTEGSIEPKNFLAVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR KVRIIEAGDTKLLPGSLVDIHNFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYDKVGTPVAETD EAEVTE >gi|312979635|gb|ACRM01000030.1| GENE 47 39030 - 42581 4270 1183 aa, chain - ## HITS:1 COG:SA0500 KEGG:ns NR:ns ## COG: SA0500 COG0085 # Protein_GI_number: 15926220 # Func_class: K Transcription # Function: DNA-directed RNA polymerase, beta subunit/140 kD subunit # Organism: Staphylococcus aureus N315 # 1 1183 1 1183 1183 2260 96.0 0 MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTG NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT DTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDIV YVRIDRTRKLPLTVLLRALGFSSDQEIIDLLGDSEYLRNTLEKDSTENTEQALLEIYERL RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKTNKKLHLKHRLFNQKLAEPIVDSETG EIVAEEGTVLDRRKLDEIMNVLESNANSEVFELEGSVIDEPVEIQSIKVYVPNDEEERTT TVIGNALPDSEVKCITPADIIASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGELLQNQFR IGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG FIETPYRKVDIDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCRFRGNNT VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPEAPFVGTG MEHVAARDSGAAITAKHRGRVEHVESNEILVRRLVEENGTEHEGELDRYPLAKFKRSNSG TCYNQRPIVSVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIIYVGAEVKDGDI LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPL GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV WALEAYGAAYTLQEILTYKSDDTVGRVKTYESIVKGENISRPSVPESFRVLMKELQSLGL DVKVMDEHDNEIEMADVDDEDATERKVDLQQKDVPETQKETNE >gi|312979635|gb|ACRM01000030.1| GENE 48 42785 - 43393 560 202 aa, chain - ## HITS:1 COG:SA0499 KEGG:ns NR:ns ## COG: SA0499 COG2813 # Protein_GI_number: 15926219 # Func_class: J Translation, ribosomal structure and biogenesis # Function: 16S RNA G1207 methylase RsmC # Organism: Staphylococcus aureus N315 # 1 202 1 202 202 293 72.0 2e-79 MSHYYDENPEVQSDEKTIQYFYHKSQLKLTTDAGVFSKGKVDFGSDLLVQTFLNEHPPGP SKRIIDVGCGYGPIGLMIAKVSPHHQMTMVDVNHRALHLAEKNKKQNQIDNVIITESDGL SQVENEYFDFVLTNPPIRAGKNVVHRIFEEAYQKLKNQGELYVVIQKKQGMPSAKKKMEE IFNNVETVNKSKGYYILKSQKG >gi|312979635|gb|ACRM01000030.1| GENE 49 43565 - 43933 578 122 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475264|ref|ZP_04059989.1| ribosomal protein L7/L12 [Staphylococcus hominis SK119] # 1 122 1 122 122 227 100 1e-58 MANQEQIIEAIKEMSVLELNDLVKAIEEEFGVTAAAPVAAAGAAGGGDAAAEKTEFDVEL TSAGSSKIKVVKAVKEATGLGLKDAKELVDNAPKVIKEAVAKEDAEKLKEQLEEVGATVE LK >gi|312979635|gb|ACRM01000030.1| GENE 50 43973 - 44473 802 166 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475273|ref|ZP_04059998.1| 50S ribosomal protein L10 [Staphylococcus hominis SK119] # 1 166 1 166 166 313 100 2e-84 MSAIIEAKKQQVDVIAEQLKNSVSTVIVDYRGLTVAEVTDLRAQLREAGVEYKVYKNTLV RRAAEKAGIEGLDEFLTGPTAIATTTDDVVAPAKVISGFAKEHEALEIKTGVMEGNVISA EEVKTVGSLPSHDGLVSMLLSVLQAPVRNFAYAVKAVGEQKEESAE >gi|312979635|gb|ACRM01000030.1| GENE 51 44784 - 45479 1160 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475253|ref|ZP_04059978.1| ribosomal protein L1 [Staphylococcus hominis SK119] # 1 231 1 231 231 451 100 1e-126 MAKKGKKYQEAANKVDRTKYYSVEEAIKLAKETSIANFDASVEVAFRLGIDTRKNDQQIR GAVVLPNGTGKSQRVLVFAKGDKITEAEEAGADYVGESEYAQKIQQGWFDFDVVVATPDM MGEVGKLGRVLGPKGLMPNPKTGTVTMDVKKAVEEIKAGKVEYRAEKAGIVHATIGKVSF DEEKLVENFNALQDVLAKAKPASAKGTYFKSVAVTTTMGPGVKVDTSSFKL >gi|312979635|gb|ACRM01000030.1| GENE 52 45686 - 46108 695 140 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|27467218|ref|NP_763855.1| 50S ribosomal protein L11 [Staphylococcus epidermidis ATCC 12228] # 1 140 1 140 140 272 99 4e-72 MAKKVEKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTQEQAGLIIPVEISV YEDRSFTFITKTPPAPVLLKKAAGVEKGSGEPNKTKVATVTKDQVREIAQTKMQDLNAAD EEAAMRIIEGTARSMGITVQ >gi|312979635|gb|ACRM01000030.1| GENE 53 46101 - 46211 79 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVAFLERSFRHEMFMSGRAKLSPVTTSRYQGGAHRG >gi|312979635|gb|ACRM01000030.1| GENE 54 46295 - 46843 736 182 aa, chain - ## HITS:1 COG:SA0494 KEGG:ns NR:ns ## COG: SA0494 COG0250 # Protein_GI_number: 15926213 # Func_class: K Transcription # Function: Transcription antiterminator # Organism: Staphylococcus aureus N315 # 1 182 1 182 182 314 97.0 5e-86 MSEEVGAKRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKK QVKKTFPGYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEMRFILKQMGL KEKTIDVELDVGEQVRIKSGPFANQVGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIE KL >gi|312979635|gb|ACRM01000030.1| GENE 55 46861 - 47061 301 66 aa, chain - ## HITS:1 COG:SA0493 KEGG:ns NR:ns ## COG: SA0493 COG0690 # Protein_GI_number: 15926212 # Func_class: U Intracellular trafficking, secretion, and vesicular transport # Function: Preprotein translocase subunit SecE # Organism: Staphylococcus aureus N315 # 11 65 4 58 60 75 80.0 2e-14 MAKDKDASKNKESFFQGVKSEMEKTSWPTKEELFKYTVIVVATVIFFMVFFWVLDVGIGN LIQLFR >gi|312979635|gb|ACRM01000030.1| GENE 56 47105 - 47248 250 47 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228475268|ref|ZP_04059993.1| ribosomal protein L33 [Staphylococcus hominis SK119] # 1 47 1 47 47 100 95 2e-20 MRKVPLVCEMCGSRNYNVPKKETSAKRLQLKKYCSRCNEHTMHKESK >gi|312979635|gb|ACRM01000030.1| GENE 57 47329 - 47919 374 196 aa, chain - ## HITS:1 COG:SA0492 KEGG:ns NR:ns ## COG: SA0492 COG1595 # Protein_GI_number: 15926211 # Func_class: K Transcription # Function: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog # Organism: Staphylococcus aureus N315 # 28 191 23 186 189 107 39.0 2e-23 MTYHFRQLEDIFKAFQYSQNTLEKEQLFANIMNVIRPKLMMKFRSLGIDHQELEDLIQDT SLKIYLALHTFNFNTNVPFEHYLNRLVYSVKKDFWRKRYAFNQRQQLLINECVVEYRLNQ MIKRTEALYLTRLSKEDLIDSFKKLSMFEREVANLLLLDYSPSEIAKRLNVKDKVVYNSI QRCKIKMKQYLLKYKR >gi|312979635|gb|ACRM01000030.1| GENE 58 47987 - 48517 598 176 aa, chain - ## HITS:1 COG:SA0491 KEGG:ns NR:ns ## COG: SA0491 COG3688 # Protein_GI_number: 15926210 # Func_class: R General function prediction only # Function: Predicted RNA-binding protein containing a PIN domain # Organism: Staphylococcus aureus N315 # 1 174 1 174 174 263 78.0 9e-71 MKDRYLIIDGYNMIGQSRELSKVARESLEEAREQLLDVIANYNAVVADEIVCVFDAYEQS GIEREYIYHGVKTVFTKEKETADSYIERYVYNLYNKHTTHITVVTSDMSEQHAIFGAGAY RVSSREMWRDLKENAMTVSKSVDDFNERKPRTRISLSKDVLAEFEKIRRGYGKKHK >gi|312979635|gb|ACRM01000030.1| GENE 59 48514 - 49263 689 249 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764761|ref|ZP_02171815.1| ribosomal protein S11 [Bacillus selenitireducens MLS10] # 6 246 9 250 255 270 55 2e-71 MEDIVIVGRHAVKEAIVSGHTINKIWIQEGIRKQQINDILKNAKAQKLIIQTVPKSKLDN LANAPHQGVAALIAPYEYADFDQFIQSQKEKEGLSTIIILDGLEDPHNLGSIIRTADASG VDGIVIPKRRSVALTQTVAKASTGAIQHVPVMRVTNLSKIIDELKDNGYWVAGAEADNAT DYRNMAADMPLAIVIGSEGQGMSRLVKDKCDFYIKIPMVGHVNSLNASVAASLMMYEVYR KRHQIGDTQ >gi|312979635|gb|ACRM01000030.1| GENE 60 49269 - 49676 278 135 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764762|ref|ZP_02171816.1| ribosomal protein S13 [Bacillus selenitireducens MLS10] # 1 132 2 133 141 111 45 9e-24 DLEGVNMDARLLNPLTLAYMGDAVLDQHVREYIVLKLQSKPNRLHQVSKQYVSAKSQAQT LEVLITKKWFTEEERDIVRRGRNAKSYTKAKNTDVQTYRKSSGLEAIIGFLYLDHRNERL DALLDMIVQIVDERL >gi|312979635|gb|ACRM01000030.1| GENE 61 49660 - 51060 1702 466 aa, chain - ## HITS:1 COG:SA0488 KEGG:ns NR:ns ## COG: SA0488 COG0215 # Protein_GI_number: 15926207 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Cysteinyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 466 1 466 466 827 86.0 0 MITLYNTLTRQKEAFKPIEPGKVKMYVCGPTVYNYIHIGNARPAINYDVVRRYFEYKGYT VDYVSNFTDVDDKLINRSKELNESVPEIADRYIKAFYEDVGALNVKRATSNPRVMNHMDE IIDFIKQLVDDGYAYESNGDVYFRTRQFDGYGKLSHQSIDDLKVGARIEAGEQKEDALDF TLWKKAKPGEISWESPFGQGRPGWHIECSVMAYHELGKTIDIHAGGSDLQFPHHENEIAQ SEAHNHAPFANYWMHNGFINIDNEKMSKSLGNFILVHDIIKEIDPDVLRFFMISVHYRSP INYNVELVNAAKSGLERIRNSYQLIKEREAIATDLETQTDYIDQINDILKQFEAVMDDDF NTANAVTAWYDLSKLANKYVLENTTSTKVIQRFKEVYQIFSDVLGVPLEGKENDVLLDED IEKLIEERNEARKNKDFARADEIRDTLKEQNIILEDTPQGVRFRRG >gi|312979635|gb|ACRM01000030.1| GENE 62 51044 - 51685 787 213 aa, chain - ## HITS:1 COG:SA0487 KEGG:ns NR:ns ## COG: SA0487 COG1045 # Protein_GI_number: 15926206 # Func_class: E Amino acid transport and metabolism # Function: Serine acetyltransferase # Organism: Staphylococcus aureus N315 # 1 213 1 213 213 382 87.0 1e-106 MIKRMKDDVKMVFEQDPAARTTFEVITTYAGLHAVWSHLIAHKLYNKKHYVLARMISQVS RFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKQKGKRHPDI GDNVLIAAGSKVLGNIQIDSNVNIGANSVVLQSVPSYTTVVGIPGHIVKQEGKRIGKTFD HRNLPDPLFEQIKQLERQLEKAKNGEIKDDYII >gi|312979635|gb|ACRM01000030.1| GENE 63 52057 - 53511 2062 484 aa, chain - ## HITS:1 COG:SA0486 KEGG:ns NR:ns ## COG: SA0486 COG0008 # Protein_GI_number: 15926205 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Glutamyl- and glutaminyl-tRNA synthetases # Organism: Staphylococcus aureus N315 # 1 483 1 483 484 852 89.0 0 MSERVRVRYAPSPTGYLHIGNARTALFNYLFAKHYDGDFVVRIEDTDSKRNLEDGESSQF DNLKWLGLDWDESIDKDKGHGPYRQSERADIYNPLIQQLLDEDKAYKCYMTEEELEEERE AQIARGEMPRYGGKHAHLTEEQRQQFEAEGRKHAIRFRVPKDKTYTFDDMVKGEISFDSN NIGDWVIVKKDGVPTYNFAVAVDDHYMEISDVIRGDDHVSNTPKQLMIYEAFGWEPPRFA HMSLIVNEQRKKLSKRDGQILQFIEQYRDLGYLPEALFNFIALLGWSPEGEDEIFSKEEF IKIFDEQRLSKSPAMFDRQKLAWVNNQYMKTKDTETVFELALPHLIKANLIPENPSEEDK EWGRKLIGLYQKEMSYAGEIVPLSEMFFHDMPELGEEEQEVLNGEQVPELMSHLYGKLEA LEPFEAAEIKKTIKEVQKETGIKGKQLFMPIRVAVTGQMHGPELPNTIEVLGKEKVLSRL KKYV >gi|312979635|gb|ACRM01000030.1| GENE 64 53792 - 54862 664 356 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764768|ref|ZP_02171822.1| ribosomal protein S5 [Bacillus selenitireducens MLS10] # 3 349 29 389 397 260 40 2e-68 MKVLKGIVIIIYIILGASFGIMLIPEILNDLGMNTPPIYTNHYIDGLVGMIVFFLIFGLF INKVTRLLKEAEMWIMKRSAVEILFATLGLVVGLFISVMASFILEMIGNSILNHLVPIII TLLLCYLGFQFGLKKRDEMLMFLPENIARSMSKNNISAIPKLLDTSAIIDGRILDIIKCG FIDGEILIPQGVINELQVVADANDSIKREKGQRGLDILNQLYDLDYPTRVIHPQKSHSDI DKLLVELAQVYHAHVITTDFNLNKVCHVQGITALNVNDLSEAIKLNVHQGDRLNILLTKM GKEPGQGVGYLDDGTMVVVDHAKSLIGKQVELEVISLLQTSSGRIIFAKTIEESLS >gi|312979635|gb|ACRM01000030.1| GENE 65 54885 - 56228 1369 447 aa, chain - ## HITS:1 COG:SA0484 KEGG:ns NR:ns ## COG: SA0484 COG1066 # Protein_GI_number: 15926203 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Predicted ATP-dependent serine protease # Organism: Staphylococcus aureus N315 # 1 442 11 452 454 820 92.0 0 MACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKTKETQAKVQKLNSIKHETTPRV QTDSKEFNRVLGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQT KLRADRLEEDSSNLNVLAETDLEVIHQTVEQERPDILVVDSIQTIYHPEISSAPGSVSQV RESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDEHHAYRILRAV KNRFGSTNEMGVFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSL VTPTTFNNPRRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSI IVATASSFKDKAVDGLDCYIGEVGLTGEVRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGW TFPEGVQVVGVTTVHDALKYAFSNRSS >gi|312979635|gb|ACRM01000030.1| GENE 66 56389 - 58860 2918 823 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764771|ref|ZP_02171825.1| ribosomal protein S8 [Bacillus selenitireducens MLS10] # 1 801 1 807 815 1128 69 0.0 MLFGRLTERAQRVLAHAQEEAIRLNHSNIGTEHLLLGLMKEPEGIAAKVLESFNITEDKV IEEVEKLIGHGQEHSGTLHYTPRAKKVIELSMDEARKLHHNFVGTEHILLGLIRENEGVA ARVFANLDLNITKARAQVVKALGSPEMNAKNATANKSNNTPTLDGLARDLTVIAKDGTLD PVVGRDKEITRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQAIVNNEVPETLKNKRVM SLDMGTVVAGTKYRGEFEERLKKVMDEIHHAGNVILFIDELHTLVGAGGAEGAIDASNIL KPALARGELQCIGATTLDEYRKNIEKDAALERRFQPIQVDEPSVEDTVAILKGLRDRYEA HHRINISDEALEAAAKLSNRYVSDRFLPDKAIDLIDEASSKVRLKSHTTPSNLKEIEQEI EKVKNEKDAAVHAQEFENAANLRDKQSKLEKQYEDAKNEWKTSQGGQSTSLSKEDIAEVI AGWTGIPLTRINETESDRLLNLEETLHDRVIGQNDAVTSISKAVRRARAGLKDPKRPIGS FIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSEFMEKHAVSRLVGAPPGYVGHDDGG QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRQVDFRNTVIIMTSNV GAQELQDQRFAGFGGASEGQDYETIRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELK EIVTMMVNKLTKRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPLIRAIQKTVEDNLSEL ILDGNQIEGKEVTIDHDGNEFKYDIHDKQENNIEDTKEPATEE >gi|312979635|gb|ACRM01000030.1| GENE 67 58876 - 59874 1154 332 aa, chain - ## HITS:1 COG:SA0482 KEGG:ns NR:ns ## COG: SA0482 COG3869 # Protein_GI_number: 15926201 # Func_class: E Amino acid transport and metabolism # Function: Arginine kinase # Organism: Staphylococcus aureus N315 # 4 330 8 333 335 472 77.0 1e-133 MGAHISEWMKETDESPIVMSSRIRLARNLENHVHPLMFPSEQAGFRVINEVQDALPNLSL MRLDTMDQQSKMKLVAKHLISKELIKQPASAVLLNEDESLSIMINEEDHVRIQAMGNDLS LIDLYQKASDIDDILDEQLEISFDEDLGYLTTCPTNIGTGMRASVMLHLPGLSIMKRMNR IAQTINRFGFTIRGIYGEGSQVYGHIYQISNQLTLGKTEEDIIDQLTEVVQQIINEEMQI RERLTQYSELETLDRIYRSLGILQNSRMISMEEASYRLSEIKLGIDLGYLNLSNFKFNEL MVSIQSAFLYNDEDENVSVNEKRANILRKHTN >gi|312979635|gb|ACRM01000030.1| GENE 68 59876 - 60439 244 187 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764773|ref|ZP_02171827.1| ribosomal protein L24 [Bacillus selenitireducens MLS10] # 1 187 1 179 179 98 29 8e-20 MLCENCHLNEAEVKLTVKSKDGTSEKWVCSECAQGEHPWNQQEHPASHSEFQDDIEEAFV VKQILQHLATKHGLNFHEVAFQEEKRCPTCNMTLKDIAHVGKFGCANCYAVFKEDIVDIV RRVQGGQFEHVGKMPRSSHHKLAIKKQIEEKTNYLNVLIEKQKFEEAAVIRDEIKALKHE SEMEHDE >gi|312979635|gb|ACRM01000030.1| GENE 69 60471 - 60932 379 153 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|163764774|ref|ZP_02171828.1| ribosomal protein L14 [Bacillus selenitireducens MLS10] # 1 152 1 152 158 150 45 2e-35 MHNMSDIIEQYIKQLFEESNEDMVEIQRANIAQRFDCVPSQLNYVIKTRFTNEHGYEIES KRGGGGYIRITKIENKDATGYINHLLQLIGPSISQQQAYYIIDGLLDKGLISDREARMIQ VIIDRETLSMDVVSRDIIRANILKRLLPIINYY >gi|312979635|gb|ACRM01000030.1| GENE 70 61087 - 62301 1652 404 aa, chain + ## HITS:1 COG:SA0479 KEGG:ns NR:ns ## COG: SA0479 COG1972 # Protein_GI_number: 15926198 # Func_class: F Nucleotide transport and metabolism # Function: Nucleoside permease # Organism: Staphylococcus aureus N315 # 1 404 1 404 404 595 88.0 1e-170 MHILIGIIGIIVFLALAFLFSSDKKNVRWHYVGLLLIIQLILAFILLKTTAGITIIGGIS NGFNYLLQKAAEGVNFVFGGFKFVDPNNPPFFFSVLLPIVFISALIGILQYTRILPWIIN VLGFLISKINGMGRLESYNAVAAAILGQSEVFISLKQQLPYIPKQRLYTLTASAMSTVSA SIIGAYFTLIEPKYVVTAVVLNLFGGFIIASIINPYKVNEEDDKLLVDESETKKQAFFEM LGEYILDGFKVAVIVGAMLIGYIAIIALLNGLVSGIFSLISGGAIKWDFQTLIGFVFAPF AFLAGVPWQDAVKSGSVMATKLLSNEFVAMQSLGSLKGISEHAKGITSVFLVSFANFSSI GIISGAIKSLNSEKGDVVARFGIKLLFGATLVSFISAAIAGFFI >gi|312979635|gb|ACRM01000030.1| GENE 71 62338 - 62892 779 184 aa, chain - ## HITS:1 COG:SA0478 KEGG:ns NR:ns ## COG: SA0478 COG0311 # Protein_GI_number: 15926197 # Func_class: H Coenzyme transport and metabolism # Function: Predicted glutamine amidotransferase involved in pyridoxine biosynthesis # Organism: Staphylococcus aureus N315 # 1 184 1 184 186 299 82.0 2e-81 MKIGVLALQGAVREHIRHIELSGHEGIAVKKVEQLDEIDGLILPGGESTTLRRLMDLYGF KEKLQQSDLPMFGTCAGLIVLAKDVEGETGYLKKLDITVARNSFGRQVDSFEAELDVKGI AKDIEGVFIRAPHIVNVENNVEILSSISDKIIAVKQGKYLGVSFHPELTDDYRITQYFIE HIVK >gi|312979635|gb|ACRM01000030.1| GENE 72 62896 - 63783 1428 295 aa, chain - ## HITS:1 COG:SA0477 KEGG:ns NR:ns ## COG: SA0477 COG0214 # Protein_GI_number: 15926196 # Func_class: H Coenzyme transport and metabolism # Function: Pyridoxine biosynthesis enzyme # Organism: Staphylococcus aureus N315 # 1 295 1 295 295 518 94.0 1e-147 MSKIVGSERVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA RSANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEFHLRKD QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRKVNSEVSRLTVMND DEIMTYAKELGAPYNVLKQIKEEGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF KSEDPEKFAKAIVQATTHYQDYELIGKLAAELGTAMKGLDINKISLEERMQERGW >gi|312979635|gb|ACRM01000030.1| GENE 73 63879 - 65249 1159 456 aa, chain + ## HITS:1 COG:SA0476 KEGG:ns NR:ns ## COG: SA0476 COG1167 # Protein_GI_number: 15926195 # Func_class: K Transcription; E Amino acid transport and metabolism # Function: Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs # Organism: Staphylococcus aureus N315 # 4 456 2 459 460 541 60.0 1e-154 MTKKQSLYISLYEKLKKQIIEGVYESNDKFPSKRQLSEHLSLSHTTIEHAYQLLLDEGFI YSKPRSGYYVSEIQSLPVTNSYPEISDILETDKATQENTYQYQFNLAEIDAKHFPSHLFK KYAKEVFEEDQLALLSKGSVQGEFNLRQQISHYLFNSRGVSCHPDQIIIGSSTEQLLNMV TDLLKDSSFIIEQPSYPPIKHVLDKHRISYTQARVEKDGINIDEVFQKNNDILYITPSHQ FPTGYVMSLKKRTQLIKWAQQKKERYIIEDDYDSEFRYFGKPIPALQNLDKKQKVIYIST FSKSLYPSCRMAYIALPNKLLKLFREMQYVESNTVPVHLQHMVAQFMATGSFERHLNKMR RIYKNKLTFILEKLTPYKEQLKIEGALTGMHFTLVVKNNLTINECIKRTKKCNLKLTPYP YNNKKLQHPTFLIGFGGIPEEKLEKHVNALIKALTV Prediction of potential genes in microbial genomes Time: Sun May 29 09:40:37 2011 Seq name: gi|312979634|gb|ACRM01000031.1| Staphylococcus hominis subsp. hominis C80 cont1.31, whole genome shotgun sequence Length of sequence - 3139 bp Number of predicted genes - 5, with homology - 5 Number of transcription units - 4, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 374 272 ## COG3316 Transposase and inactivated derivatives - Term 296 - 331 1.3 2 2 Op 1 . - CDS 395 - 898 347 ## Sca_1515 hypothetical protein - Prom 921 - 980 3.0 3 2 Op 2 . - CDS 1065 - 1523 302 ## COG3449 DNA gyrase inhibitor - Prom 1557 - 1616 11.5 - Term 1591 - 1623 3.1 4 3 Tu 1 . - CDS 1789 - 2430 397 ## SSP2165 putative fibronectin-binding protein - Prom 2662 - 2721 9.9 + Prom 2404 - 2463 8.7 5 4 Tu 1 . + CDS 2694 - 3138 394 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979634|gb|ACRM01000031.1| GENE 1 3 - 374 272 123 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 123 102 224 224 236 97.0 6e-63 IWLRKQRDNHSAYAFIKRLIKQFGKPQKVVTDQAPSTKAAMAKIIKAFKLKPDCHCTSKY LNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFSPCHEISIM LAS >gi|312979634|gb|ACRM01000031.1| GENE 2 395 - 898 347 167 aa, chain - ## HITS:1 COG:no KEGG:Sca_1515 NR:ns ## KEGG: Sca_1515 # Name: not_defined # Def: hypothetical protein # Organism: S.carnosus # Pathway: not_defined # 5 164 3 159 239 87 36.0 2e-16 MQNTKLELKHILIIIFIIILAIISFVFVVGYIISYVDPKHSITGYSIAISFVGVFATFGG AYLGAKVSGDNSRKLYEYQKNEKNKQIINKLEIAASIKMIKVLNHSNIAKESRLNLYVAP EDNRTYDEIMSSGIMETLDLIDGYANPIIELLEDRGFCCKVKNIANH >gi|312979634|gb|ACRM01000031.1| GENE 3 1065 - 1523 302 152 aa, chain - ## HITS:1 COG:BS_yosT KEGG:ns NR:ns ## COG: BS_yosT COG3449 # Protein_GI_number: 16079059 # Func_class: L Replication, recombination and repair # Function: DNA gyrase inhibitor # Organism: Bacillus subtilis # 1 151 1 148 149 112 38.0 3e-25 MNYKIEILDDCNVIYVRNKGKYGSNKNYEMMKNFKEWIKENCYWRYVETNGILGVALDDP QIVEEESCRYDLVLKIDEDVKINDFINSRSFTGGKYVVFALPHTTKDVKDFYSNLPNIID NNNLRVKNEPILERYKEEEGKDKYCEVLIPIL >gi|312979634|gb|ACRM01000031.1| GENE 4 1789 - 2430 397 213 aa, chain - ## HITS:1 COG:no KEGG:SSP2165 NR:ns ## KEGG: SSP2165 # Name: not_defined # Def: putative fibronectin-binding protein # Organism: S.saprophyticus # Pathway: not_defined # 1 212 1 212 213 201 46.0 2e-50 MKTMIYPHQYNYIRSVILRLKNVYKTVNDKETVKVIQSETYNDINEIFGHIDDDIEESLK VLMNIRLSNKEIEAILNKFLEYVVPFELPSPQKLQKVFKKVKKIKIPQFEEYDLKVSSFV GWNELASNRKYIIYYDEKKQLKGLYGEISNQVVKGFCTICNKESNVSLFMKKSKTNSDGQ YVKKGDYICRDSIHCNKQLTDINQFYNFIDKLD >gi|312979634|gb|ACRM01000031.1| GENE 5 2694 - 3138 394 148 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 148 1 148 224 246 95.0 8e-66 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTIYRWVQEYAPILYQ IWKKKHKKAYYKWRIDETYIKIKGKWSYLYRAIDTEGHTLDIWLRKQRDNHSAYAFIKRL IKQFGKPQKVVTDQAPSTKAAMAKIIKA Prediction of potential genes in microbial genomes Time: Sun May 29 09:40:47 2011 Seq name: gi|312979633|gb|ACRM01000032.1| Staphylococcus hominis subsp. hominis C80 cont1.32, whole genome shotgun sequence Length of sequence - 12889 bp Number of predicted genes - 16, with homology - 11 Number of transcription units - 11, operones - 4 average op.length - 2.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Op 1 . + CDS 1 - 441 299 ## COG3316 Transposase and inactivated derivatives 2 1 Op 2 . + CDS 487 - 885 321 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 3 1 Op 3 . + CDS 872 - 1639 498 ## GTNG_2068 hypothetical protein - Term 1483 - 1517 -0.6 4 2 Tu 1 . - CDS 1692 - 2258 347 ## - Prom 2443 - 2502 7.2 - Term 2569 - 2606 5.6 5 3 Tu 1 . - CDS 2629 - 2724 172 ## - Prom 2776 - 2835 5.1 6 4 Tu 1 . - CDS 2878 - 3414 462 ## COG1396 Predicted transcriptional regulators - Prom 3465 - 3524 3.6 + Prom 3830 - 3889 8.7 7 5 Tu 1 . + CDS 3961 - 4209 101 ## gi|282166163|gb|ADA80181.1| hypothetical protein SAP105B_017 - Term 4926 - 4971 9.1 8 6 Op 1 . - CDS 4983 - 5093 147 ## - Prom 5170 - 5229 4.1 - Term 5212 - 5249 4.0 9 6 Op 2 . - CDS 5261 - 6196 832 ## SAVP001 replication initiator protein A - Prom 6391 - 6450 7.2 + Prom 6548 - 6607 7.0 10 7 Op 1 . + CDS 6636 - 7403 761 ## SAVP034 replication-associated protein + Term 7420 - 7461 3.3 11 7 Op 2 . + CDS 7462 - 7656 77 ## - Term 7783 - 7820 1.1 12 8 Op 1 24/0.000 - CDS 8029 - 8799 655 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 13 8 Op 2 . - CDS 8801 - 9496 201 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 9521 - 9580 15.0 + Prom 9884 - 9943 4.9 14 9 Tu 1 . + CDS 10033 - 11499 1294 ## COG0488 ATPase components of ABC transporters with duplicated ATPase domains + Term 11602 - 11645 8.5 - Term 11590 - 11633 8.5 15 10 Tu 1 . - CDS 11723 - 12151 524 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs - Prom 12297 - 12356 2.6 16 11 Tu 1 . - CDS 12361 - 12513 141 ## Predicted protein(s) >gi|312979633|gb|ACRM01000032.1| GENE 1 1 - 441 299 146 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 146 79 224 224 278 97.0 3e-75 YIKIKGKWSYLYRAIDTEGHTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVVTDQAPST KAAMAKIIKAFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYA LYKKNRRSLQIYGFSPCHEISIMLAS >gi|312979633|gb|ACRM01000032.1| GENE 2 487 - 885 321 132 aa, chain + ## HITS:1 COG:PA3867 KEGG:ns NR:ns ## COG: PA3867 COG1961 # Protein_GI_number: 15599062 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Pseudomonas aeruginosa # 5 127 62 185 191 85 41.0 3e-17 MQQNQLDRLGRTTKQLIELSQWLDENSIDLHIIDMNVSTKDAMGKMFFTMMSAFAELEAN LLSERTKKGLEAARARGRKGGRPSLPDYKKREIKFLYDEQKLTGEEIAKQTGVSRSTVYR IIKIKEKKNGYK >gi|312979633|gb|ACRM01000032.1| GENE 3 872 - 1639 498 255 aa, chain + ## HITS:1 COG:no KEGG:GTNG_2068 NR:ns ## KEGG: GTNG_2068 # Name: not_defined # Def: hypothetical protein # Organism: G.thermodenitrificans # Pathway: not_defined # 27 246 55 270 340 70 21.0 6e-11 MDINNFKNFSIFNEKSIKSMQSTGKKFKELAEQVKRAGEKSLKVNKVLIDFEYPPFDHFN LFMILDLIEILPLENPDDINEEYFNNMILEYFDHEHLDYLKDDIDNYNLSKDDRKIFKNI LLGYKNEQYDLIIPTLLSRIEGLVYKNIGFEGKSTYGNFNKIIDEVINNYKLKHSIYDDS EFIKIKEYYKEGLKRQFTFNDPDNEKINRHAIMHGHSSQYGTKINSVKLLLHFEYLHYCL LELSEQEKNRIKQLL >gi|312979633|gb|ACRM01000032.1| GENE 4 1692 - 2258 347 188 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVSIFIVFKYSYQIEGILEEYPNILKAFVALFTLLTTVISLVIAYKSYDNSVKQQEKDKE EKNKQFEENSDRIINSLKSDLAKYTRKINVFRLGYTNSDVEFSELAKELSIKSNLEEIEK LTSQVRSSKSTELAKMDEVNIVNLHTASDSALFLFDIYENTSRENDETFEKEIIKELNKI CNIVFYTS >gi|312979633|gb|ACRM01000032.1| GENE 5 2629 - 2724 172 31 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSEIFVNIMTTAASGCLVALFAHWLRKRNDE >gi|312979633|gb|ACRM01000032.1| GENE 6 2878 - 3414 462 178 aa, chain - ## HITS:1 COG:L10283 KEGG:ns NR:ns ## COG: L10283 COG1396 # Protein_GI_number: 15671987 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Lactococcus lactis # 1 177 1 184 185 84 33.0 8e-17 MISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYVIQELSDLYDISLDEL VVNTALENKEAKSMKNVNPFALFGAILFNVFLFSLIVIFFGGFLLLSLFISLAMLFSPLI LAIFVLTGVQEFNVIQLVMTVIFVVIGLLSIPLLKKVSVFLFKFFKRYLKFNHKAIFY >gi|312979633|gb|ACRM01000032.1| GENE 7 3961 - 4209 101 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|282166163|gb|ADA80181.1| ## NR: gi|282166163|gb|ADA80181.1| hypothetical protein SAP105B_017 [Staphylococcus epidermidis] # 9 82 2 75 75 95 85.0 9e-19 MNLKINNKIIIEYDIEQKVFSQFQKVKQMNELLRLLLSDFIFDINTKSNRINRIWIKKSI LFIGLTTTEAYEINKNNSIQTI >gi|312979633|gb|ACRM01000032.1| GENE 8 4983 - 5093 147 36 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSTKKKIKVTLAMINVLLTAVELYLQWQLSKSENEL >gi|312979633|gb|ACRM01000032.1| GENE 9 5261 - 6196 832 311 aa, chain - ## HITS:1 COG:no KEGG:SAVP001 NR:ns ## KEGG: SAVP001 # Name: repA # Def: replication initiator protein A # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 311 1 311 311 473 91.0 1e-132 MPNFEKYNLSQVKTERFYQLPKYLFEDAYFKKMSAEAKIMYALLKDRFELSIQNEWVDKN NNIYFIFSNKHLCEYLGYAEQKIIKLKKELISFNLLTQERVGLNKPNRLYLLKPNYDIKA SHSKELPNSQFQNNEFGSSRTVNLSGQELPNSQSNDTENNDTDYIKTESNDTNDLNDNKL TFPSNHTNHSNHNNSNFNNEALKFQLLEELPQSIQRYLSNFSVNEIKIIKPVLLKAKTSF NNSIDTYYLLEDMEIEILHVLKRFKAMLIQKNETVEAMQGYLMKSLKSEFAEMHTLNKRR DHLPITSLFNQ >gi|312979633|gb|ACRM01000032.1| GENE 10 6636 - 7403 761 255 aa, chain + ## HITS:1 COG:no KEGG:SAVP034 NR:ns ## KEGG: SAVP034 # Name: not_defined # Def: replication-associated protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 255 1 253 253 246 87.0 6e-64 MRTIKMVADELGVTKQTIVNNAKSLNITFEKENGINYIDDNDYLKIIEKITKKESTIQNK ESVKKELFGENTAKSEKNIYNNSNSSETLKTKVNELEKQIEIFETRAKNDEKYIENLTKQ LDQQNSNVNTLNKLLENQQILALESNKKIQKLESQLEEERQLNYSFDTATNNRQNINPQE ATFTEESQNINQQQTKRQPTEVNYKDIAEEKKNDSTDEGELTKEDKFVEETKNDPDDNRE VEPPKKGFWSRFFGN >gi|312979633|gb|ACRM01000032.1| GENE 11 7462 - 7656 77 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKLLIIIGYVNRVNEAIIVHTEPLFGSHLCFKSLCKKTYKIPLKMQNKDISLSHMSFGFS TTLF >gi|312979633|gb|ACRM01000032.1| GENE 12 8029 - 8799 655 256 aa, chain - ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 257 66.0 2e-68 MGTLIKQECFKLFKKKSTFIIPIIIMLLMVVQAIISKNYDDVFSPQSSIESAFSGFSWFI FLLIIQASTIISMEFYHGTIKNLLYRKYTRTSIIISKIITLILFSLLYFIVSIVVGIILW AIFFNDINLLESKGDALSLLSKMLLTGLGTYVGTWLVLSITLLISCAMKSPGVSIAVGIV LYFATSILSGILTIVVDKWEWLKWNPISMMNIMVQIVDKNMKKFTKLELHELFIGNIVYI IIFLIIVVFVFKKKNV >gi|312979633|gb|ACRM01000032.1| GENE 13 8801 - 9496 201 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 209 5 223 305 82 27 2e-15 MDVLTVEHLTKKIGNKTILKDISLNLKRGQIVGLVGANGAGKTSLMKVILGYSIYQEGNF EVIENKHKKSNVGALIENPGVYPFMSGYDNLKLLNETKNTQDIDTIVSQLKMDEYIHNKA KTYSLGMKQKLGIAIAFLNQPQLIILDEPMNGLDPRAVRDVRELIVKKAEEGVTFLISSH ILSELVKITNSILIINKGKIVTETTEEELNQYKDNDLENVLLSIIDKEDQS >gi|312979633|gb|ACRM01000032.1| GENE 14 10033 - 11499 1294 488 aa, chain + ## HITS:1 COG:BH1900 KEGG:ns NR:ns ## COG: BH1900 COG0488 # Protein_GI_number: 15614463 # Func_class: R General function prediction only # Function: ATPase components of ABC transporters with duplicated ATPase domains # Organism: Bacillus halodurans # 10 473 8 465 538 240 31.0 4e-63 MEQYTIKFNQINHKLTDLRSLNIDHLYAYQFEKIALIGGNGTGKTTLLNMIAQKTKPESG TVETNGEIQYFEQLNMDVENDFNTLDGSLMSELHIPMHTTDSMSGGEKAKYKLANVISNY SPILLLDEPTNHLDKIGKDYLNNILKYYYGTLIIVSHDRALIDQIADTIWDIQEDGTIRV FKGNYTQYQNQYEQEQLEQQRKYEQYISEKQRLSQASKAKRNQAQQMAQASSKQKNKSIA PDRLSASKQKGTVEKAAQKQAKHIEKRMEHLEEVEKPQSYHEFNFPQNKIYDIHNNYPII AQNLTLVKGSQKLLTQVRFQIPYGKNIALVGANGVGKTTLLEAIYHQIEGIDCSPKVQMA YYRQLAYEDMRDVSLLQYLMDETDSSESFSRAILNNLGLNEALERSCNVLSGGERTKLSL AVLFSTKANMLILDEPTNFLDIKTLEALEMFMNKYPGIILFTSHDTRFVKHVSDKKWELT GQSIHDIT >gi|312979633|gb|ACRM01000032.1| GENE 15 11723 - 12151 524 142 aa, chain - ## HITS:1 COG:SAP015_2 KEGG:ns NR:ns ## COG: SAP015_2 COG1961 # Protein_GI_number: 16119215 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 139 27 165 165 213 84.0 1e-55 MESIDRLGRNYDEIIETVNYLKEKDVQLMITSLPMMNEVISNPLLDKFMKDLIVQILAMV SEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQKRVIYHRVVEMLEEGQAISK IAKEVNITRQTVYRIKHDKGLS >gi|312979633|gb|ACRM01000032.1| GENE 16 12361 - 12513 141 50 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MGFSLLLNTPDTWLNNNFKHKSRDNYICIFKVHPNHTFIIVEFIATKMYG Prediction of potential genes in microbial genomes Time: Sun May 29 09:41:28 2011 Seq name: gi|312979632|gb|ACRM01000033.1| Staphylococcus hominis subsp. hominis C80 cont1.33, whole genome shotgun sequence Length of sequence - 2241 bp Number of predicted genes - 3, with homology - 3 Number of transcription units - 2, operones - 1 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 86 - 145 4.0 1 1 Op 1 . + CDS 189 - 1007 616 ## COG1192 ATPases involved in chromosome partitioning 2 1 Op 2 . + CDS 1013 - 1213 319 ## SSPP123 hypothetical protein + Term 1258 - 1292 6.2 3 2 Tu 1 . - CDS 1643 - 2239 313 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979632|gb|ACRM01000033.1| GENE 1 189 - 1007 616 272 aa, chain + ## HITS:1 COG:pli0069 KEGG:ns NR:ns ## COG: pli0069 COG1192 # Protein_GI_number: 18450351 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: ATPases involved in chromosome partitioning # Organism: Listeria innocua # 2 272 12 286 293 159 37.0 6e-39 MKLCRRVILNIITVGNFKGGVGKTTVSTLLSYIASENYNKKVLLIDFDPQGNATQIMKRT YPEFKEESLSFINMLKSGNIDESIIRLTSNLSLLPADSSLANLSDIISKTDILKKRYILK NVVEKIEKIYDFDYVFIDVPPTINSDFTNNAVYASNYILMVFQTQKSAYESSLSFVNFLR DRKKESDLPFELVGAVPVLIKKNGRVDKQILEMSKSAFSEALFEHQIYQRERIKKFAADG IKDKDMHDKKVIHMFNKVYEELVSRIKLIEEE >gi|312979632|gb|ACRM01000033.1| GENE 2 1013 - 1213 319 66 aa, chain + ## HITS:1 COG:no KEGG:SSPP123 NR:ns ## KEGG: SSPP123 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 66 1 66 66 100 100.0 1e-20 MAGFLDNIDTSEVKYTENYRPISKSTTMRVDTDIKKRLNQMALDKDTSIKSIIDKVLEEF LENNKY >gi|312979632|gb|ACRM01000033.1| GENE 3 1643 - 2239 313 198 aa, chain - ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 175 38 212 224 310 97.0 1e-84 RGVNVHHSTVYRWVQEYAPILYQIWKKKHKKANYKWRIDETYIKIKGKWSYLYRAIDAEG YTLDIWLRKQRDNHSAYVFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKGFKLKPDCHC TSKYLNNLIEQDHRHIKVRKTRYQSINTAKNTLKGIECIYALYKKNRRSLQIYGFLKFEF NIPIFFATSFILLINKSI Prediction of potential genes in microbial genomes Time: Sun May 29 09:41:41 2011 Seq name: gi|312979631|gb|ACRM01000034.1| Staphylococcus hominis subsp. hominis C80 cont1.34, whole genome shotgun sequence Length of sequence - 46841 bp Number of predicted genes - 58, with homology - 45 Number of transcription units - 33, operones - 16 average op.length - 2.6 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 179 - 238 12.8 1 1 Op 1 . + CDS 456 - 1448 805 ## SAUSA300_pUSA0301 replication initiator protein 2 1 Op 2 . + CDS 1479 - 2180 339 ## SSPP126 putative transposase 3 1 Op 3 . + CDS 2229 - 2504 391 ## SSPP127 hypothetical protein + Term 2559 - 2593 -1.0 + Prom 2614 - 2673 4.5 4 2 Op 1 . + CDS 2693 - 3103 357 ## SaurJH9_2743 YolD-like protein 5 2 Op 2 . + CDS 3138 - 3542 320 ## SE_p513 hypothetical protein + Term 3753 - 3790 4.1 - Term 4025 - 4064 6.0 6 3 Tu 1 . - CDS 4072 - 4284 110 ## gi|228476195|ref|ZP_04060899.1| hypothetical protein STAHO0001_2177 - Prom 4502 - 4561 8.3 + Prom 4026 - 4085 8.5 7 4 Tu 1 . + CDS 4301 - 4975 483 ## COG3316 Transposase and inactivated derivatives + Term 5103 - 5146 6.2 - Term 5091 - 5133 6.8 8 5 Op 1 . - CDS 5219 - 5458 243 ## SE_p404 hypothetical protein 9 5 Op 2 . - CDS 5475 - 5744 387 ## SAVP002 hypothetical protein - Prom 5772 - 5831 4.8 + Prom 5766 - 5825 7.6 10 6 Tu 1 . + CDS 5948 - 7870 2350 ## COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member + Prom 8056 - 8115 8.9 11 7 Op 1 . + CDS 8170 - 8406 311 ## SAOUHSC_01131 hypothetical protein + Term 8464 - 8498 0.2 + Prom 8459 - 8518 7.3 12 7 Op 2 . + CDS 8589 - 8834 210 ## SERP2230 hypothetical protein - Term 8841 - 8898 15.2 13 8 Op 1 . - CDS 9017 - 9295 195 ## gi|52220925|ref|NP_940778.2| NukH 14 8 Op 2 . - CDS 9302 - 10039 314 ## LSL_1382 hypothetical protein 15 8 Op 3 . - CDS 10036 - 10788 311 ## LSL_1383 ABC transporter 16 8 Op 4 . - CDS 10789 - 11697 262 ## PROTEIN SUPPORTED gi|90020817|ref|YP_526644.1| ribosomal protein S16 17 9 Tu 1 . - CDS 12677 - 12925 244 ## - Prom 13036 - 13095 5.5 - Term 12973 - 13010 2.3 18 10 Tu 1 . - CDS 13106 - 13717 388 ## COG1266 Predicted metal-dependent membrane protease - Prom 13896 - 13955 11.2 + Prom 13872 - 13931 13.3 19 11 Op 1 . + CDS 13986 - 14180 275 ## + Term 14354 - 14391 -0.8 + Prom 14185 - 14244 6.6 20 11 Op 2 . + CDS 14411 - 14596 291 ## SERP2215 hypothetical protein + Term 14611 - 14665 8.4 - Term 14952 - 15004 2.2 21 12 Op 1 . - CDS 15030 - 15752 300 ## SaurJH9_2550 hypothetical protein 22 12 Op 2 . - CDS 15768 - 16403 547 ## COG1122 ABC-type cobalt transport system, ATPase component - Prom 16457 - 16516 8.7 + Prom 16658 - 16717 3.8 23 13 Tu 1 . + CDS 16785 - 17198 361 ## COG2314 Predicted membrane protein + Term 17271 - 17325 0.3 + Prom 17276 - 17335 8.6 24 14 Op 1 . + CDS 17363 - 17569 284 ## COG1476 Predicted transcriptional regulators 25 14 Op 2 . + CDS 17577 - 17993 236 ## gi|212383452|ref|YP_002302335.1| putative membrane integral protein 26 14 Op 3 . + CDS 18019 - 18102 119 ## + Term 18106 - 18132 -1.0 27 14 Op 4 . + CDS 18167 - 18304 183 ## SERP2230 hypothetical protein + Prom 18309 - 18368 7.0 28 15 Op 1 . + CDS 18473 - 18670 125 ## + Prom 18673 - 18732 4.1 29 15 Op 2 . + CDS 18762 - 19589 534 ## COG4152 ABC-type uncharacterized transport system, ATPase component 30 15 Op 3 . + CDS 19589 - 20293 345 ## SLGD_00176 hypothetical protein + Prom 20389 - 20448 8.4 31 16 Tu 1 . + CDS 20657 - 21160 435 ## COG4815 Uncharacterized protein conserved in bacteria 32 17 Tu 1 . + CDS 22362 - 22706 285 ## SSP2361 hypothetical protein + Term 22757 - 22795 -0.4 + Prom 22722 - 22781 6.8 33 18 Tu 1 . + CDS 23014 - 23109 83 ## + Term 23142 - 23190 14.9 + Prom 23236 - 23295 4.0 34 19 Tu 1 . + CDS 23329 - 23442 129 ## + Term 23477 - 23519 -1.0 + Prom 23740 - 23799 7.3 35 20 Op 1 2/0.000 + CDS 23840 - 23995 217 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 36 20 Op 2 2/0.000 + CDS 24011 - 24118 123 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 37 20 Op 3 . + CDS 24115 - 24369 252 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs 38 20 Op 4 . + CDS 24439 - 24678 262 ## - Term 24917 - 24974 10.7 39 21 Op 1 . - CDS 24986 - 25099 207 ## 40 21 Op 2 . - CDS 25169 - 25288 170 ## - Prom 25342 - 25401 4.0 41 22 Op 1 . - CDS 25438 - 25554 183 ## 42 22 Op 2 14/0.000 - CDS 25567 - 26814 494 ## COG0612 Predicted Zn-dependent peptidases 43 22 Op 3 . - CDS 26786 - 28042 669 ## COG0612 Predicted Zn-dependent peptidases - Prom 28147 - 28206 10.3 + Prom 28081 - 28140 10.2 44 23 Tu 1 . + CDS 28175 - 30739 1921 ## COG0515 Serine/threonine protein kinase + Term 30778 - 30828 16.6 - Term 30764 - 30816 17.0 45 24 Tu 1 . - CDS 30837 - 30965 116 ## - Prom 31176 - 31235 7.9 - Term 31214 - 31258 5.2 46 25 Tu 1 . - CDS 31297 - 31491 89 ## - Prom 31522 - 31581 9.1 - Term 32004 - 32043 8.3 47 26 Tu 1 . - CDS 32118 - 33974 1282 ## BpOF4_21974 hypothetical protein - Prom 34004 - 34063 7.7 - Term 34051 - 34109 6.0 48 27 Op 1 24/0.000 - CDS 34143 - 34913 828 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 49 27 Op 2 . - CDS 34915 - 35610 195 ## PROTEIN SUPPORTED gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 - Prom 35765 - 35824 9.4 - Term 35816 - 35859 5.9 50 28 Op 1 4/0.000 - CDS 35940 - 36353 579 ## COG0589 Universal stress protein UspA and related nucleotide-binding proteins 51 28 Op 2 . - CDS 36366 - 37817 1427 ## COG0659 Sulfate permease and related transporters (MFS superfamily) - Prom 38008 - 38067 11.6 + Prom 37785 - 37844 8.1 52 29 Tu 1 . + CDS 37931 - 38473 560 ## SE_p412 resolvase + Term 38479 - 38516 2.3 + Prom 38787 - 38846 8.2 53 30 Op 1 2/0.000 + CDS 38941 - 39519 684 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Prom 39561 - 39620 6.4 54 30 Op 2 . + CDS 39645 - 40250 757 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 40294 - 40348 16.6 - Term 40282 - 40334 11.3 55 31 Op 1 . - CDS 40502 - 44896 3274 ## LVIS_B23 superfamily II DNA/RNA helicase 56 31 Op 2 . - CDS 44898 - 45806 759 ## PsycPRwf_1121 hypothetical protein - Prom 45841 - 45900 15.3 + Prom 46152 - 46211 3.9 57 32 Tu 1 . + CDS 46359 - 46790 391 ## COG3316 Transposase and inactivated derivatives 58 33 Tu 1 . - CDS 46758 - 46841 67 ## Predicted protein(s) >gi|312979631|gb|ACRM01000034.1| GENE 1 456 - 1448 805 330 aa, chain + ## HITS:1 COG:no KEGG:SAUSA300_pUSA0301 NR:ns ## KEGG: SAUSA300_pUSA0301 # Name: repA # Def: replication initiator protein # Organism: S.aureus_USA300 # Pathway: not_defined # 1 328 1 318 319 296 55.0 7e-79 MTEERFNIQQQYREKFYQLPKVFFTNEKYMQLSNDAKIAYALLKDRLELSIKNNWFDDNG DIFFIFTNEKLKAILNCHDGKLTKIKKELSKNNLLEQVRCGQGRPNKLYLMNPEVTKEDV YEIKKQEENIDETCHDTEMRFSHFKNCENRISRNAEIAQQEMRKSHTNDTELNDTDISNT DSSDTNDMNDVREENVEATKPNHPNHTNHLQQQSDEEALKHLELQEMPEDTKRYMNKFSA KEIQIIKSVILKAKRSFNDMYGEVYMLEDMDDELFTVLKRFKGIMVKKQETVEAMQGYLM RSILSELEEMRSTNMRRKNFENRPLNVFKT >gi|312979631|gb|ACRM01000034.1| GENE 2 1479 - 2180 339 233 aa, chain + ## HITS:1 COG:no KEGG:SSPP126 NR:ns ## KEGG: SSPP126 # Name: not_defined # Def: putative transposase # Organism: S.saprophyticus # Pathway: not_defined # 36 231 10 205 207 353 95.0 4e-96 MNFSLVKSFLPHMTKEDMRVIQVPNWYLSYYRRFPEKLENCKYKHIKAINDYIKQEKAHI IGIDLGKYHYLTASNIDRSFVFVDKHNTLFHLFRKYERRIANKQYDNSEAYSKLKTGLKS HINQVVKEMLEQTSNRFQTVFALGDHGSSHLSFPSLVFDLTYFAIKQRKNENDEILIVDE SFTSIECPICHNRNQYNRTNKNKFKCTKCGFRHQNNDIVAASNIAKKGKLLVF >gi|312979631|gb|ACRM01000034.1| GENE 3 2229 - 2504 391 91 aa, chain + ## HITS:1 COG:no KEGG:SSPP127 NR:ns ## KEGG: SSPP127 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 1 91 2 92 92 151 97.0 7e-36 MNNKQKARLKHYKDYDYPKQAYAFFDHKKVKVVLNNEESFTGYIVKEYTYEILLVKSDGI KDPKDNELEKRTLIPKHSIAYTTNFIHLPQE >gi|312979631|gb|ACRM01000034.1| GENE 4 2693 - 3103 357 136 aa, chain + ## HITS:1 COG:no KEGG:SaurJH9_2743 NR:ns ## KEGG: SaurJH9_2743 # Name: not_defined # Def: YolD-like protein # Organism: S.aureus_JH9 # Pathway: not_defined # 1 136 3 138 138 157 58.0 9e-38 MINPNAPDKYKYEMDYRKIPREYLNARIPKGRGMVKWQAFKTVPEQYEILEQYIKDQNKI PMPLLSEDQLEEINEKVHDKIQTNRIAEISYWENGYISALNCYIQKLDTLESIMLIKRVD NQSIVRLSLNNIVSVH >gi|312979631|gb|ACRM01000034.1| GENE 5 3138 - 3542 320 134 aa, chain + ## HITS:1 COG:no KEGG:SE_p513 NR:ns ## KEGG: SE_p513 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 3 134 279 409 410 122 46.0 3e-27 MTKISSSEAYDMVSLFKGLIREIAKDETPKIMQDKTLTYDEKYKKISEIENECINRTAKF EVVNEEFVLNLHRLLSSYKQGDVDRRRAYRNFLSEYVNGSIEKTFDLMNTELLGEYDHAI RRHKVLIQTIKENK >gi|312979631|gb|ACRM01000034.1| GENE 6 4072 - 4284 110 70 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228476195|ref|ZP_04060899.1| ## NR: gi|228476195|ref|ZP_04060899.1| hypothetical protein STAHO0001_2177 [Staphylococcus hominis SK119] # 1 70 1 70 70 120 100.0 3e-26 MLKLYYKINFATEPSNAYIDIGQREFNKLLLMLFSAEEYGTAHTLTKNYLAYSVEAKKPK VARIPKTNKF >gi|312979631|gb|ACRM01000034.1| GENE 7 4301 - 4975 483 224 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 224 1 224 224 371 91.0 1e-103 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTIYRWVQEYAPILYQ IWKKKHKKAYYKWRVDETYIKIKGKWCYLYRAIDADGHTLDIWLRKKRDNHSAYAFIKRL IKQFGKPQMIITDQAPSTKVAMSKLIKDFKLNPDCHCTSKYLNNLIEQDHRHIKVRKTRY QSVNTAKNTLKGIEFIYGLYKKNRRSLQIYEFSPCYEINHMLAS >gi|312979631|gb|ACRM01000034.1| GENE 8 5219 - 5458 243 79 aa, chain - ## HITS:1 COG:no KEGG:SE_p404 NR:ns ## KEGG: SE_p404 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis # Pathway: not_defined # 1 79 1 79 79 95 89.0 4e-19 MNDFKNLKKINGEIEKAELRKHRLKNLDRKERAHRLIRKGAMLEKYFECEHLSPDETEEL LKMYANYINTNKPNKFKKK >gi|312979631|gb|ACRM01000034.1| GENE 9 5475 - 5744 387 89 aa, chain - ## HITS:1 COG:no KEGG:SAVP002 NR:ns ## KEGG: SAVP002 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 89 1 89 89 82 92.0 5e-15 MSKIKQTDITKLSQLEQQIEQLKEQKKKQEAQLSNKIGGYFLNELNLNMINSSDELYKIM DKVIEEFNKDIEQNSSDENKENLTEDKIN >gi|312979631|gb|ACRM01000034.1| GENE 10 5948 - 7870 2350 640 aa, chain + ## HITS:1 COG:mll0964 KEGG:ns NR:ns ## COG: mll0964 COG0507 # Protein_GI_number: 13471082 # Func_class: L Replication, recombination and repair # Function: ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member # Organism: Mesorhizobium loti # 32 224 31 199 1015 89 33.0 3e-17 MNKGYFMLRVTNISRATKNIVASASYRSDEVLYSERTDEKIKFRNHIVKPESMILTPQHA PEWTKDRERLWNEVDKVEKNNAKTKNPRLAKEVLLSLPNDFDREVQTELTKDFIKSEFVD QGMVADISIHRDDMNNPHAHVLLTQRPFNSDGTWGKKTKTRTQYDENGHAILNKNGNKVR KQERFADFDFKEVRKHWELKLNYYSEREQSLRRYDSRSFEAQGLEKIAEIPLTREEYRLE QNEKKRCEKEGIEYQPVTYYGQKNEQIRRYNRGEVSQLFSDKEKEQAQNAIRLLVQNAND RVRKNEQSYSVLFDRYQREVGYSEAKETIKNTFDSASTFGRKIQNDLLKNEIKRRQLKFY ADNYDTNYQFRKEIESKGYRQQEFVNTVETNYKALLNEKNKLESREEKRKEIYQSAKDVY LTESEKSNLIVQQMYPKSHHHFSDDEKAFIVDEAQKGNFIKASNVHYLFKQNSHIPSNVL LEDTYKKVSKDIFFSERHLKKLEKDSFEYNVELQFIKEKEKEIDSYKEHIDDDLKIDIGN RNFEKVKDQTPNEKVQLLIKLEKYNNINQEEVIEKHIHQVDRNDNDNRLEHENEQSNHIN LPTINAIDFLMYYANETEKQNNINHQKKKKKQDRNNQMRR >gi|312979631|gb|ACRM01000034.1| GENE 11 8170 - 8406 311 78 aa, chain + ## HITS:1 COG:no KEGG:SAOUHSC_01131 NR:ns ## KEGG: SAOUHSC_01131 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_NCTC8325 # Pathway: not_defined # 1 74 1 74 75 87 59.0 1e-16 MKFITKILDGLAYICVALLFLKYAVMSANTMFDWHLRWYFLEDIPYMAITLFILTFVFAV PSEMIKDKYKEKTGRDLE >gi|312979631|gb|ACRM01000034.1| GENE 12 8589 - 8834 210 81 aa, chain + ## HITS:1 COG:no KEGG:SERP2230 NR:ns ## KEGG: SERP2230 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 74 1 81 91 115 76.0 5e-25 MNTFVFGVILKRLEEKGLNVHEVFNMSDKQAKKDLFDDLYHYARYTKKCGAELTMVALNA DELMHYFICCYMERYAYLLNA >gi|312979631|gb|ACRM01000034.1| GENE 13 9017 - 9295 195 92 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|52220925|ref|NP_940778.2| ## NR: gi|52220925|ref|NP_940778.2| NukH [Staphylococcus warneri] # 1 92 1 92 92 77 100.0 2e-13 MKRKDYLFFVIALLPLISLLLQLMKISLIHNYQSFFSIVNIICILFTIAYSIILVINSKK KNNLQKTILILSIIYILTLIFISFGVIINMFN >gi|312979631|gb|ACRM01000034.1| GENE 14 9302 - 10039 314 245 aa, chain - ## HITS:1 COG:no KEGG:LSL_1382 NR:ns ## KEGG: LSL_1382 # Name: not_defined # Def: hypothetical protein # Organism: L.salivarius # Pathway: ABC transporters [PATH:lsl02010] # 4 243 1 240 242 176 46.0 8e-43 MISLLSIELRKLQNNYILIFLLVFNILSVSIGSMIFYFNQSAFPNSNNRDLILWGQETLY TSQLFFPILIGVLCSISWQFEESNNNWMRLKTIPLKESKIVLSKFLSLFLLTLLNQIIFF VLFCISASIVNVSLEELLKFIYWDFIGWIGTASIVAIQLYLSVATRNFTFSILISTIGGI LGLLTLFISNFIFKIFPYSQITVGVRSRSLMNFTFSEMLLFLIINAAYITVFLTLTTIKL KKREG >gi|312979631|gb|ACRM01000034.1| GENE 15 10036 - 10788 311 250 aa, chain - ## HITS:1 COG:no KEGG:LSL_1383 NR:ns ## KEGG: LSL_1383 # Name: not_defined # Def: ABC transporter # Organism: L.salivarius # Pathway: not_defined # 5 249 4 245 246 126 34.0 6e-28 MLKAINLEFFKMRRRKFILPILLITFVGILWFCAIAIKELNITDTKYGIHMLISNILTID SMIYPILIGILCSRLADIEHQGKTFQLLNTSKQSVFNLFTSKVSVSLIILFVIDIIQLMT ILLIANSHNISLKLEIISKFMLSFIIASFFLILIHMALSFFFEKQSVSIVSALVGSFLGL VTGGMLPSYIKIFLPWQYYSLLNPVHKKMVHKGYEYSNNDYYFIYIFISILLIVILFFII KALIKRRDLN >gi|312979631|gb|ACRM01000034.1| GENE 16 10789 - 11697 262 302 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|90020817|ref|YP_526644.1| ribosomal protein S16 [Saccharophagus degradans 2-40] # 6 296 12 309 318 105 27 5e-22 MINNIVQTQNLTKKFSDSYSVDNLSLNIGSKEIYGFLGPNGAGKSTTMKMLLGLMQPTKG NIKIFNQDISKNRDEILMHVGALIEEPSYYKNLTGLENLQVIQRLLNLPSKNVKEALKIV RLTEHKDKLVKNYSLGMKQRLGIALAIVKFPKLLILDEPTNGLDPSGIQEIRELIKSFPK TYGMTVLISSHLLSEIEHMANTVGIINRGKLLFEGKLTELEEQNKILINTNNNRKCINLL QSKGYKLENNEKPLLLDTTQKDISTAVKLLVNNQFEIYQVQSVQKSLEEKFIEITNDGKE YL >gi|312979631|gb|ACRM01000034.1| GENE 17 12677 - 12925 244 82 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MRDKSGRLYQKVNRIIATKSGVTGLTSTKESKKGYVKVNTVVPKQQYNIVNEVNQLRKTE LSNIDRDYYISWANKQLKDFGD >gi|312979631|gb|ACRM01000034.1| GENE 18 13106 - 13717 388 203 aa, chain - ## HITS:1 COG:SA1598 KEGG:ns NR:ns ## COG: SA1598 COG1266 # Protein_GI_number: 15927354 # Func_class: R General function prediction only # Function: Predicted metal-dependent membrane protease # Organism: Staphylococcus aureus N315 # 17 193 21 197 211 74 32.0 1e-13 MKKLEEKSQITLIVQSMIVIILFFICEALFLTYMNKPVFSIIGVICLLLTLLLCKLFKFN LFSFKALKRNEIVLIIISFLVIEITTYLITTFFPLPSNQESLIKVVDQSNLIVAIITLGI LIPIIEECIFRGVFIKVLFQKSQRIGVIISILLFTFAHGPSSVTDFIIYGLPAVIYSVSY YKTKRLEIPIIIHIMNNLYAFLA >gi|312979631|gb|ACRM01000034.1| GENE 19 13986 - 14180 275 64 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKFLEILGTILGIGIVVFPLSALGFLITEFTKPAKERTFKKAVFCIGLMVICGFGLVIIA NILD >gi|312979631|gb|ACRM01000034.1| GENE 20 14411 - 14596 291 61 aa, chain + ## HITS:1 COG:no KEGG:SERP2215 NR:ns ## KEGG: SERP2215 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 61 1 61 61 99 91.0 3e-20 MSVKNMFKQSWEDLKNLELNFKNVSILVVVSFILSSIFTPVVGVPVGLLGSAYWIQNRKR K >gi|312979631|gb|ACRM01000034.1| GENE 21 15030 - 15752 300 240 aa, chain - ## HITS:1 COG:no KEGG:SaurJH9_2550 NR:ns ## KEGG: SaurJH9_2550 # Name: not_defined # Def: hypothetical protein # Organism: S.aureus_JH9 # Pathway: ABC transporters [PATH:saj02010] # 1 240 1 240 240 226 70.0 6e-58 MKLEFRKSFSNKIILILGVLFFFLFLLGYFLPIGLDNVKHLSYSEYFFSAYTVATQFGFL LFSFVISYFINKEYSNKNILFYKLIGNNVFSFFYKKVTVLFIESFFFIFLGLTLISIIFS NFSHYLLLLLLFSMVILQYILVIGTISIISPNILISIGLSIIYWIGSVILVAINKKKFGL IAPFEASNSMYMSIEDILKNKISSIPLHNIVTILMFFLFLFIINFIVLTIFKKKWIKFGM >gi|312979631|gb|ACRM01000034.1| GENE 22 15768 - 16403 547 211 aa, chain - ## HITS:1 COG:MA1418 KEGG:ns NR:ns ## COG: MA1418 COG1122 # Protein_GI_number: 20090278 # Func_class: P Inorganic ion transport and metabolism # Function: ABC-type cobalt transport system, ATPase component # Organism: Methanosarcina acetivorans str.C2A # 1 204 262 481 528 63 26.0 3e-10 MNIKNYSLKVKKKILIDNCNLNFYSGEINHIVGKNGVGKSQLAKDFLLNNSGYIPKSISY NTTLISSFSNIPNDVSKDFLLNILKNKFNKSKEIFQKIYKILNIEDIPSHVLIKNLSDGQ KQKLRFLSFLLEDNSLIVLDEVTNALDKKTVNEIYHFLNSFIANNPSKTILNITHNLSDI SNLPGKYFNFENKKIEEYLSKEKLINDYINL >gi|312979631|gb|ACRM01000034.1| GENE 23 16785 - 17198 361 137 aa, chain + ## HITS:1 COG:SA1057 KEGG:ns NR:ns ## COG: SA1057 COG2314 # Protein_GI_number: 15926797 # Func_class: S Function unknown # Function: Predicted membrane protein # Organism: Staphylococcus aureus N315 # 70 136 1 67 67 84 47.0 7e-17 METKIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSL NQLIKGVEIMQVNKYVYSALAFFLGGFGAHKFYVKKNKKALLYLLFCWTGIPGVIGMVEG ILTIIRPSDSENNIEIN >gi|312979631|gb|ACRM01000034.1| GENE 24 17363 - 17569 284 68 aa, chain + ## HITS:1 COG:SP0333 KEGG:ns NR:ns ## COG: SP0333 COG1476 # Protein_GI_number: 15900264 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Streptococcus pneumoniae TIGR4 # 3 62 2 61 64 67 56.0 5e-12 MNNNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKALDVDLNKLF WEVGNNEE >gi|312979631|gb|ACRM01000034.1| GENE 25 17577 - 17993 236 138 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|212383452|ref|YP_002302335.1| ## NR: gi|212383452|ref|YP_002302335.1| putative membrane integral protein [Staphylococcus aureus] # 1 138 1 138 138 108 63.0 1e-22 MDERQEIINKNMLIRSFGVLFILLVMYIILLSFINISQVAYQLILIGILTLTSIYMWIDS FISRILYYDVKNNKDIKTKIVTAVITLLMIDIVAIILSNFKMIDIEITIIFLVTLLGINI CLLSIYYIVLKLWTIWYR >gi|312979631|gb|ACRM01000034.1| GENE 26 18019 - 18102 119 27 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MTTAIIGGLIITTLLLIDEKLSKKKKK >gi|312979631|gb|ACRM01000034.1| GENE 27 18167 - 18304 183 45 aa, chain + ## HITS:1 COG:no KEGG:SERP2230 NR:ns ## KEGG: SERP2230 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 45 1 45 91 87 91.0 2e-16 MNTFVFGVITKRLEEKGLNIHEVFNMSDKQAKKELFDDLYHYTKF >gi|312979631|gb|ACRM01000034.1| GENE 28 18473 - 18670 125 65 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MQPILRLLKFKNKWSYNLFSNIVMNKSKKFNLKVDSLFVAIISKYINSHFIMLICAILVL LVSII >gi|312979631|gb|ACRM01000034.1| GENE 29 18762 - 19589 534 275 aa, chain + ## HITS:1 COG:MJ1023 KEGG:ns NR:ns ## COG: MJ1023 COG4152 # Protein_GI_number: 15669212 # Func_class: R General function prediction only # Function: ABC-type uncharacterized transport system, ATPase component # Organism: Methanococcus jannaschii # 1 191 1 194 262 98 35.0 1e-20 MTSSIKVKNVSKNLDHTHVLENISFHILKNSITLIKGSNGSGKSVTLKLIAHLYKVSNGS INTDGQISYAPDHFPDYLNLTVKEYLIFVSKCYHISFNNDKIKKIIKGLKLHYFLNYKIK NCSKGTQQKINLIQCLIKNADIYILDEPFSGLDNDSINYLVNYLSELKKTATIILTSHEN YINERLVTDIINIETQVHTSVHNKSEDKKIIVVDNFSSIELSEIANNIYFDYNTIEKDNK LKLKIRVPLSKTNEVLCELIQKGAVIDTVKNEGND >gi|312979631|gb|ACRM01000034.1| GENE 30 19589 - 20293 345 234 aa, chain + ## HITS:1 COG:no KEGG:SLGD_00176 NR:ns ## KEGG: SLGD_00176 # Name: not_defined # Def: hypothetical protein # Organism: S.lugdunensis # Pathway: not_defined # 6 232 7 233 235 135 42.0 1e-30 MNFLNYQFKKFFRSYTFIPPYITHIIWICIFYFYSNQNILSSYAASAIILFFISSWITFI IFDLEGNNEKHLLFIQLNSKIKFLNLKIFFSFISSIPLIIISFLFPIVTYRFSEAITFQY AFLSIYLHIIVVILGVILGSLIRIQTILSRKYSWLLLVLLTLLSIIKFILVNNQHILKYV LIIVPSVGEFLNYFNQPIAKLWCFDFLILNTNIAVYIVITLILINLIFKYSENH >gi|312979631|gb|ACRM01000034.1| GENE 31 20657 - 21160 435 167 aa, chain + ## HITS:1 COG:SA0324 KEGG:ns NR:ns ## COG: SA0324 COG4815 # Protein_GI_number: 15926037 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 29 153 24 148 152 127 54.0 7e-30 MNSNYITFAFFNEIPLFDYKFLLLNHELEQWNQEYEAFNFEFNGIKFKSRLAKKTPKKEG YFVAFWRKNETNKNRPFNCKESKDKLIINILDRSKKGQFIFPKELLVEKGIISSEKHKGK MAIRVYPSWEKNLNKTALNTQKWQIPYFLDFTKGFNEKKIKELYCSP >gi|312979631|gb|ACRM01000034.1| GENE 32 22362 - 22706 285 114 aa, chain + ## HITS:1 COG:no KEGG:SSP2361 NR:ns ## KEGG: SSP2361 # Name: not_defined # Def: hypothetical protein # Organism: S.saprophyticus # Pathway: not_defined # 4 114 4 114 114 112 61.0 3e-24 MGILIRLENAFVFITAVIIYFMFGFSLWLFLILLLVPDISMLGYLYNNKIGSYIYNIGHS YIVPILITLLYLAMGVNFLLGIALIWLAHISMDRTIGYGLKYTVGFDKTTIQKV >gi|312979631|gb|ACRM01000034.1| GENE 33 23014 - 23109 83 31 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MFSTLFVTIIAPIIVGVIITLFSHWLNNRER >gi|312979631|gb|ACRM01000034.1| GENE 34 23329 - 23442 129 37 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MLKILDNSLLIIICLYFCYLTGKVLWQVTLNLARHTL >gi|312979631|gb|ACRM01000034.1| GENE 35 23840 - 23995 217 51 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 6 51 1 46 199 60 65.0 5e-10 MRWKSMIVGYARVSSFDQNLDRQLENLKTFGAEKIFTEKQSGKSIENRPIF >gi|312979631|gb|ACRM01000034.1| GENE 36 24011 - 24118 123 35 aa, chain + ## HITS:1 COG:SAP015_2 KEGG:ns NR:ns ## COG: SAP015_2 COG1961 # Protein_GI_number: 16119215 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 35 19 53 165 59 80.0 2e-09 MRMGDRFVVESIDRLGSNYDEVIHTVNYLKDKEVQ >gi|312979631|gb|ACRM01000034.1| GENE 37 24115 - 24369 252 84 aa, chain + ## HITS:1 COG:SAP015_2 KEGG:ns NR:ns ## COG: SAP015_2 COG1961 # Protein_GI_number: 16119215 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 57 54 110 165 84 82.0 6e-17 MMITSLPMMSEVIGNPLIDKFTKDLIIQILAMVSEQERNENKRRQAQGIKVTKEINITSQ TVYRIKNDILLLNIVSNVSLREKF >gi|312979631|gb|ACRM01000034.1| GENE 38 24439 - 24678 262 79 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKGKIINAIKDAIFIIIVTFIIAILLNFIGGDLLLNKFSSKLGHLEIVNIFSDNKINGLV TLGFILAIISFIYDMLFDD >gi|312979631|gb|ACRM01000034.1| GENE 39 24986 - 25099 207 37 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEEILKLQKIEATEESLDKKKSISTLVAFLSTISQHC >gi|312979631|gb|ACRM01000034.1| GENE 40 25169 - 25288 170 39 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEEILKLQKLESIEVEELDKGPKLSWTAVFGLSTISRYC >gi|312979631|gb|ACRM01000034.1| GENE 41 25438 - 25554 183 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEEILKLQKLEDKNSEKLNGLATIRVTVNSTMSVFCKK >gi|312979631|gb|ACRM01000034.1| GENE 42 25567 - 26814 494 415 aa, chain - ## HITS:1 COG:lin1430 KEGG:ns NR:ns ## COG: lin1430 COG0612 # Protein_GI_number: 16800498 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Listeria innocua # 1 399 1 411 428 185 29.0 1e-46 MKTILYPSFKEKVFYTKLKNGLKVIVIPKNEYFNTTATLSVNLGSINEYDFLKKSESQLT LGSAHFLEHIILENSRVNTLINSGIYINGATTFTNTSYVLKTNNHIIENINSLIEIVLNP KFDDEEILKEKKIIKHEIDMYHDDPEWISRFKLLENCFISYPIKYEIGGTVDTVKNIDKK ILNSLYNHFYQPNNMLLVICTPLSPDFIFKNLSSYKGTFTETQYNQKNYIEPSNVANKFD NICLPIKNSRLFVGFKYVTESSFSFKDTLTLELLMEYLFSKNSSFFLKLKKRNIIIGEID YNIHVNSNIVFVSLNFDTSNLLLAKKLILSLINHKDVKISEDKVLQVKNKKIGNILKASN SIEWLVSSYIKEYFNTHDFFTVIEKLKNISIDDLKNMRKLFFYNFAYSILEVSNC >gi|312979631|gb|ACRM01000034.1| GENE 43 26786 - 28042 669 418 aa, chain - ## HITS:1 COG:BH2393 KEGG:ns NR:ns ## COG: BH2393 COG0612 # Protein_GI_number: 15614956 # Func_class: R General function prediction only # Function: Predicted Zn-dependent peptidases # Organism: Bacillus halodurans # 12 406 21 426 431 110 21.0 5e-24 MNSEYNYLIDTTKKFKTIEIFFLISLPSQSINQRSFKLLPSLLYQCCQNFDNVQELENTL ETMYGATLLYHTFRINSEETIFFQLTIPNQDFTEKNLVIKAINILENIVFNSKIEFNSYS EEIFNLAKNDLYTEILNIHSNKLLYSISKLSEYMNNQQHRSYTNFIKPNEIKKITRNDIN DLYHQIKKDGKFNLCIIGDLDVNYLEKNINKNWNKRNNLNFLNNNEESKINKDKIHIIKE DTNLNQGILTFGLQFFNKVNSEANNVISELIAGGQSSVLYQLLREKNNLTYYINSLVDTN ENRIYISTIIDVKDEDKVINIVRNAIKNIKKGEITQKEFLYAKKAIINNLLESLDTPNGN IDKYIQSSKYSTEKNYNFLQKINSLTKNEITTKIQDCEITTIYFLRRGQNENYFIPKL >gi|312979631|gb|ACRM01000034.1| GENE 44 28175 - 30739 1921 854 aa, chain + ## HITS:1 COG:SP1344 KEGG:ns NR:ns ## COG: SP1344 COG0515 # Protein_GI_number: 15901198 # Func_class: R General function prediction only; T Signal transduction mechanisms; K Transcription; L Replication, recombination and repair # Function: Serine/threonine protein kinase # Organism: Streptococcus pneumoniae TIGR4 # 27 844 15 869 869 260 28.0 7e-69 MHPMNYLKYMKNGEIFYRSKMLTPHDNNEYFVENLPENYNVIYDKENYWKYYSVEDETLC TQGWKIHVSSNSKDTLETLKYVSQIAINYNIPFKHLLNEQIFFLNNSKNANRASSGKFIV LYPKNKNQFLLIMEEIRKKIRNLPKGPYILSDKRWKDSNVYYRYGGFVAILNDKGEHCIK DQNGNLIPDDRTPFYTVPDFEKSFDEYLDELNKSYRESNSIENPLNNYEILGALSFSNSG GVYKAQNKENQKKVIIKEARYNTGFDGQNRTALERQKIEYEALSDLSSVNGIVNAIDYFK VWEHQFMVEEFIEGDNLHSWLAKNYPFLKDEDTTIYTTNIESILKKLEDIITLMHKNNIV MGDLQPYNIIVDEKLNVTLIDFETASYANEKPSVGLGVPSFSNYSISINTDRDWYALYKI ARFCLLPTYTSAETEYYLNTTHKNWIKKYYGASMLGIIEHIEGKLKKPIKEYNYLKENDY TTNDLICKIKNGIFSNTYINDYLWPNDVRQSEYQNGDLTILYGSLGVIWSLLQSGENLNS TIKDWIEANILEKSFHNNNTGLFTGTAGIATVLYQAGYKDRAINMFDAINLNLNTEDISI VSGQSGIGLTLLSLYNNTNDEKILNKCKYIASTIINNYKNDIQNKIFDPNVPNIGLLNGW SGASLFFCLMYKYTKDEKFSKYANEFLKIDIKLLKEEKNTMQLFDENNPRLLPYLSHGSI GVGIAIKYLKKVTNNPNIYSKELELITNLHLTKTTIDSGLLYGAAGFLLIPTIMENTASN KIDEASKNVHELLKVFLAQKDNYILTPGEFSNRFTFDISSGSSGVLLGLLSYSQNNCLLW LPCINNKSFFSIQE >gi|312979631|gb|ACRM01000034.1| GENE 45 30837 - 30965 116 42 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MEEILKLQKMEYSNDVEIQSMTPEPSVTRILTWSTMSDHCKH >gi|312979631|gb|ACRM01000034.1| GENE 46 31297 - 31491 89 64 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MLLKICDFISNLCLVLLIIFIGLHFLNNIFDWHLKFQFRSIQVSILGVFLMLYLLSYLLE KREE >gi|312979631|gb|ACRM01000034.1| GENE 47 32118 - 33974 1282 618 aa, chain - ## HITS:1 COG:no KEGG:BpOF4_21974 NR:ns ## KEGG: BpOF4_21974 # Name: not_defined # Def: hypothetical protein # Organism: B.pseudofirmus # Pathway: not_defined # 175 614 31 468 486 544 61.0 1e-153 MKLKSIKIEGFRKHYSTEVICEDTTFLIGPNNAGKSSVLKAIKYLLEDKKKIDDSDFCCF INNNNEVDRLTDKVIITAEFNNLTTDALNWRGFNSHRLFKNGDFEKEGYSFYYRKTFDSS GCKIEMKQKSLTLKEDYKNCKSIKDFIDNDVDKSVFENSLNKININKKISISEWKKLREE GSEIIFDITDSIEWFENPGGISQNVSSRLPKFLLIKDQSQNEELSGKNGSLMTTLNQLFE DIREESENFKNAQYYLNELAQELDPQDENSDFSNLLKELNNVVSDIFPNSSFIAKANLSN ANDVIKPNFDVQLGSNIYTSVNNQGAGVVRSAIFAMLRYRNMRENKRKQKDEYIRPLLIA FEEPEIYLHPQAAKQMKETIYSLSLQENNQIICTTHSPYMIDLSKNTNQILNSFNLEEKP NPLNENGDNNEPNIEQVIINPFNISSKFKNLTDEDKTYVKMILKMDDSIAKIFFTKNVLI IEGDTEELVFKETILRMPEHMQKEFSYNWEIIKARGKAAIIPLVNYLKSMGIKTYVMHDR DANTPGATKFNEPISKALNDDAKLYLLEECIEDMLGYNPPSNEKPYNAYRFINENWKDSW DDVTESWKRIINSLYKQS >gi|312979631|gb|ACRM01000034.1| GENE 48 34143 - 34913 828 256 aa, chain - ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 256 1 256 256 253 66.0 3e-67 MSTLIKQECFKLFKKKSTYIIPIIIILLMLAQAVVSKNYEDVFSPKLAISSAFSGFSWFI FLLIIQASTIISMEFYHGTIKNLLYRKYTRSSIIISKIVTLIIFSLIYFIITIAIAIVLW AIFFNDINLLESKGDELSLLSKMLLTGLGTFIGTWLVLSITLLISCAMKSPGVSIAVGIV FYFATSILSGLLTIVIDKWEWLKWNPINMMNIMVQIIDKSFKEITKLELHELFIGNIVYI FIFLILVVLVFRKKNI >gi|312979631|gb|ACRM01000034.1| GENE 49 34915 - 35610 195 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|119503196|ref|ZP_01625280.1| Ribosomal protein S16 [marine gamma proteobacterium HTCC2080] # 4 223 5 235 305 79 26 3e-14 MNVLTVEHLTKKIGKKTILEDVSLKLDRGQIAGLVGANGAGKTTLMKVILGYSSYQKGQF DVIENKHKKSNIGALIESPGIYPFMSGYDNLKLLNESKNSNDIDTIVSQLKMNEYIHNKA KTYSLGMKQKLGIAIAFLNQPQLIILDEPMNGLDPKAVRDVRELIIKKAQEGVTFLISSH ILSELVKITNSIFIINKGKIVTETTEEELNKYEDNDLENVLLDIIDKEEQS >gi|312979631|gb|ACRM01000034.1| GENE 50 35940 - 36353 579 137 aa, chain - ## HITS:1 COG:BH0415 KEGG:ns NR:ns ## COG: BH0415 COG0589 # Protein_GI_number: 15612978 # Func_class: T Signal transduction mechanisms # Function: Universal stress protein UspA and related nucleotide-binding proteins # Organism: Bacillus halodurans # 5 137 4 137 137 104 41.0 6e-23 MYNSILLAADGSKNSIRAAQELLNFIGDYTIVTILTVVDIEESKTDVLHDHQGTNLTQKR ESKLQSIKDLFTEHNVNYKIKIVHGTPTDKVVEVSNSGEYQAIILGTRGLNSFQKMVLGS VSHKVAKRSQIPVIIVK >gi|312979631|gb|ACRM01000034.1| GENE 51 36366 - 37817 1427 483 aa, chain - ## HITS:1 COG:BH0414 KEGG:ns NR:ns ## COG: BH0414 COG0659 # Protein_GI_number: 15612977 # Func_class: P Inorganic ion transport and metabolism # Function: Sulfate permease and related transporters (MFS superfamily) # Organism: Bacillus halodurans # 2 479 3 482 486 493 58.0 1e-139 MVEKLKSEWFNQPRKNILAGIVVALALIPEAIAFSIIAGVDPMVGLYAAFIIATVTAIVG GRPAMISGATGAVALLVTPLVKEHGVEYLFAATILMGLIQLLLGILKVGRLMKFIPRPVM IGFVNALGIMIFMSQIEHIFNISIATYIYVIITLLIVYVIPRFYKAIPAPLIAIIVLTAL YMYTGSDVRTVGDLGNIKQTLPHFLIPNIPFNLETLQIIFPYSLSMAIVGLVESLLTAKI VDDATDTHSSKNKESRGQGIANIITGFFGGMGGCAMIGQSVINVKSGANSRLSTFTAGIV LMFMIIVLGGVVVQIPMPILAGIMVMVSIGTVDWNSFKYIKKAPKTDAFVMVLTVIIVLI THNLAIGVVVGVVFSAIFFATKISKVEVIYKELGKQHRFSFKGQIFFVSIDSMMEKIDFN IEDSVIVLNFDHAHLWDDSAVNAIDTIVRKFEEKNNIVYVEKLNADSRKIISELSYLNET HLN >gi|312979631|gb|ACRM01000034.1| GENE 52 37931 - 38473 560 180 aa, chain + ## HITS:1 COG:no KEGG:SE_p412 NR:ns ## KEGG: SE_p412 # Name: not_defined # Def: resolvase # Organism: S.epidermidis # Pathway: not_defined # 1 180 16 195 195 309 100.0 3e-83 MKYGYIRPVTINDTVTEQAKKIEIYTKNILKETHANNKKRNELNTLLNSKLVFGDTLYIT DLCIIADSTKHLVDILDLLSAKGISLYIINLNKNLIADTNENFIKTLHEITDFQSDIVKF RTRMGLENYTREGKRLGRPKRDDKNLRDAIEMYMSKKYTLDEIKEKTNISRATLYRHLDK >gi|312979631|gb|ACRM01000034.1| GENE 53 38941 - 39519 684 192 aa, chain + ## HITS:1 COG:SAP013 KEGG:ns NR:ns ## COG: SAP013 COG1961 # Protein_GI_number: 16119213 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Staphylococcus aureus N315 # 1 192 1 192 197 340 92.0 1e-93 MKIGYARVSTGLQNLNLQEDRLNQYGCEKIFSDHISGSKSKRPGLDKAIEFARSGDTIVV WRLDRLGRNMEDLITLVNELNNRGVSFHSLEENITMDKSSSTGQLLFHLFAAFAEFERNL ILERSSAGRIAARARGRYGGRPEKLNKQDLKLLKTLYDNGTPIKTIAEQWKVSRTTIYRY LNKLNNQENKDK >gi|312979631|gb|ACRM01000034.1| GENE 54 39645 - 40250 757 201 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 199 1 199 199 256 68.0 2e-68 MIVGYSRVSSIDQNLERQLENLKTFGVEKIFTEKQSGKSIEIRPVLQEALNFVRMGDRFV VESIDRLGRNYDEVIHTVNYLKDKEVQLMITSLPMMNEVVGNPLLDKFMKDLIIQILAMV SEQERNESKRRQAQGIKVAKEKGVYKGRPLLYSPNAKDPQKRIVYHKVVEKLEEGQAISK IAKEVNITRQTVYRIKRDNEI >gi|312979631|gb|ACRM01000034.1| GENE 55 40502 - 44896 3274 1464 aa, chain - ## HITS:1 COG:no KEGG:LVIS_B23 NR:ns ## KEGG: LVIS_B23 # Name: not_defined # Def: superfamily II DNA/RNA helicase # Organism: L.brevis # Pathway: not_defined # 6 1463 2 1479 1480 1433 51.0 0 MPTLEKTNFYFLKDDINFNTFINPTNRIENLYRDGYYTHVIIQARQIAEAVTFEILNHEM IKIPKRTTFNSLLKILKNKNILPTKILNILYNIKSYGNISAHDIENEVDESLAIEILRQT FTIVSWLYKKYATDPKSVPRFETPKKIFNNNSQLTYETKAERKMIYVWTAKNDDGMWPAY IGSKKIGETTVANNLRADWSDNSSYLKEAANKRVKQYANTAGVPYDMQWATLAIKNDQKT WFHDYDVHNVLKRSGIKLSENLKGQEWFKTDLETVKLAIEAVRNGQSALSSEIDDKYKKL EIEFRPEQKTAISESKKVFKKKNKMLWNAKMRFGKTLSALQLIKEEQFNHVLILTHRPIV SDSWFEDFKKLNLEASGYKYGSKSTQYSINDLLKNEKFIYFVSMQDLRGSSQVGGKQGVK NDEIFSQQWDLVIIDEAHEGTQTELAEHVQNAIISPTTKLLELSGTPFNLLQNYDDDQVF TWDYSMEQAAKLQWDIENPNIPNPYSKLPKVNMFTFDMLEKNKYSSNNSFNFSEFFKVNA ETNEFVYKKDVMNFLNEITKNSKTNYPFSTEEFRNNLRHSLWLLPNIKSARALKSLMENH PIFGKEYKIINIVDNNDNIANEADLDRVRTAISDKPWKTKTITLTVRKLTTGVNIPEWTA VIFLNNTSSPTSYLQAAFRAQTPYSDKTGEKINSYVFDFAPDRALTVMAQASQLRTAPGK RITSKQKSDMNRLLNFLPIIGVSGNKMKKFSVDSMLGQLKRVYAQKAINSGFSDDSLYSD ELLLNITEEDINAFSDLKSIIGSTTSEKLPKEVKINDNGLTEEEYDKAEESKNKNKKDRT PEEQEIIDKMKLAQKNKRAMISILRGISIRIPLMIFGMNVNIEDDISIDNFIDLVDDVSW EEFMPSGITKEKFQKFTKYYDSDIFIEAGKRIRSKVQELDSLEPIERVQELSYIFGTFKN PDKETVLTPWRAVNLHLHSTIGGLSFYDKAYKKNIVDGNAQFNWSSNEIWKKDTTFLEIN SKTGLYPLYIATSLYYKELMKLNNDYAGKFDAIELNNLWSEILKKNIFVIAKTPMAKSIT QRTLSGYKNLQTNIIFIDSLLHELKIHNQEKVIESILRRFNMKKFDVVVGNPPYQQNIEG RSNQPSIYNYFYDLAFSIGDKVTLISPARFLSNVGDTDKNWNKKMLNNDHLKIIHFEEYS SEIFPNTQIKGGVVITYYDNKKSFGKIGTFFKYEELKTILEKVENKTSKFLSSILYSNTS YSYTNLLLKENPNFNTRLSGGSKRYASSSVFEKLPEIFYDICPEDSQKYIEIYGLQNKKR TYKYVARKYFSSHPNLDKYKVLVASSNGNGHFGETLSTPIVMPPKVGHTETFISFGAFNT KLEAENLLKYIKTKFLRTLLGIFKVTQGNKTAHVWSTIPLQDFSNHSDIDWSQDINKIDQ QLYNKYNLTDEEISFIEKNVKEMM >gi|312979631|gb|ACRM01000034.1| GENE 56 44898 - 45806 759 302 aa, chain - ## HITS:1 COG:no KEGG:PsycPRwf_1121 NR:ns ## KEGG: PsycPRwf_1121 # Name: not_defined # Def: hypothetical protein # Organism: Psychrobacter_PRwf-1 # Pathway: not_defined # 9 302 37 325 325 324 57.0 3e-87 MKTNFDEKVSENLIHHTMTEVLDILLIDRTTSTKKKTKNIIWGNDNYIHFGADKYSALSQ IKSELLTGYMKDLILPRSMKNKQLQKNRTKKNGEVFTPTWIVKKQNDLIEQEYKNDTLLD YIQRIWLEVTAGEAPYMVTRYDMETGYPIDLHERVGFLDRKLQRINMSINDKIEWHNLVL IAYKSSYGFEWNGDSLLLARENLIYSYQEYYIDKWKTLPSIDNLKEIANIISYNVFQMDG LTCTIPFSSIEQKNVEMQLSLQLFDDEEKLDDIEKVVKKTGKRVKIMDWEKEKLVYFDER IK >gi|312979631|gb|ACRM01000034.1| GENE 57 46359 - 46790 391 143 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 129 1 129 224 218 96.0 3e-57 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ IWKKKHKKANYKWRIDETYIKIKEKWSYLYRAIDAEGYTLDIWLRKQRDNHSAYAFIKRL IKQFGKPQKGNYRSGTFNEGSNG >gi|312979631|gb|ACRM01000034.1| GENE 58 46758 - 46841 67 27 aa, chain - ## HITS:0 COG:no KEGG:no NR:no DRGVLRQSGLSLKPLITLAIATFVEGA Prediction of potential genes in microbial genomes Time: Sun May 29 09:44:02 2011 Seq name: gi|312979630|gb|ACRM01000035.1| Staphylococcus hominis subsp. hominis C80 cont1.35, whole genome shotgun sequence Length of sequence - 4162 bp Number of predicted genes - 8, with homology - 6 Number of transcription units - 3, operones - 2 average op.length - 3.5 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 3 - 506 405 ## COG3316 Transposase and inactivated derivatives 2 2 Op 1 . - CDS 398 - 640 174 ## 3 2 Op 2 . - CDS 700 - 1413 735 ## LACR_2579 DNA segregation ATPase FtsK/SpoIIIE related protein 4 2 Op 3 . - CDS 1432 - 2046 478 ## LACR_2579 DNA segregation ATPase FtsK/SpoIIIE related protein 5 2 Op 4 . - CDS 2039 - 2380 409 ## LACR_2578 hypothetical protein 6 2 Op 5 . - CDS 2383 - 2712 331 ## - Prom 2901 - 2960 9.4 + Prom 2635 - 2694 14.2 7 3 Op 1 . + CDS 2856 - 3593 614 ## LACR_E4 hypothetical protein + Prom 3599 - 3658 7.6 8 3 Op 2 . + CDS 3708 - 4161 366 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979630|gb|ACRM01000035.1| GENE 1 3 - 506 405 167 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 6 163 7 164 224 257 92.0 6e-69 TISDIKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQI WKKKHKKANYKWRIDETYIKIKEKWSYLYRAIDAEGYTLDIWLRKQRDNHSAYAFIKRLI KQFGKPQKVITDQAPSTKVAMAKVIKGFKLKPDCRSTPRCKTNTPIA >gi|312979630|gb|ACRM01000035.1| GENE 2 398 - 640 174 80 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MELEKATGKRNGCVRLQKTTREMEIILKSISVVEVGVLGAEPLRFYAIGVLVLHRGVLRQ SGLSLKPLITLAIATFVEGA >gi|312979630|gb|ACRM01000035.1| GENE 3 700 - 1413 735 237 aa, chain - ## HITS:1 COG:no KEGG:LACR_2579 NR:ns ## KEGG: LACR_2579 # Name: not_defined # Def: DNA segregation ATPase FtsK/SpoIIIE related protein # Organism: L.lactis_SK11 # Pathway: not_defined # 2 236 210 448 450 353 70.0 2e-96 MIDDNLNAIRLAYDLVWYTDEAPHLSIIARTRAGKSVFAGDYLCRLMKLQNWIVEYNSAK FDRYVREFNGRSEVTEIVERAEYWVEVMNQRLNEINLAGKDKYLDMENMNNIAIIFDEIG NLNAGLEQKNLKIYKNRWEQAINKLSATGASAGIHIIAISQFATKESFLPTLARVNCSDA VIMLGGAADSADERRYLMPGFADLPKRSYKKGQGLARILGSGYKWEKPHFYETPWFL >gi|312979630|gb|ACRM01000035.1| GENE 4 1432 - 2046 478 204 aa, chain - ## HITS:1 COG:no KEGG:LACR_2579 NR:ns ## KEGG: LACR_2579 # Name: not_defined # Def: DNA segregation ATPase FtsK/SpoIIIE related protein # Organism: L.lactis_SK11 # Pathway: not_defined # 3 203 5 199 450 171 43.0 2e-41 MVKYRRVIANKNSKRQSYQILFSALMLAIFIFIVSLFIGCTLYKIYFLKEFISNLKIILY LLCFIIFLLFITFIFALKQREQISELNIKNMNKEQKRLSKKILKLFNDKQVTDVLKLSNS TRYGEEMPNLYVYIDEGCQSGFVAIENIANFEKMDKEKYEQKVSGLFNGNLKRFAVTSSD LTVNDTYMKFYFEDKETSHRIYIV >gi|312979630|gb|ACRM01000035.1| GENE 5 2039 - 2380 409 113 aa, chain - ## HITS:1 COG:no KEGG:LACR_2578 NR:ns ## KEGG: LACR_2578 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 1 113 1 113 113 101 50.0 7e-21 MSKPIWTPTLKQVLKHDTEEVNLVSERTGNEYIAEVIPHLKVISTGSVDITNDGKYKYAV VDTKHGLEYEIKVDKKISVRFGMVLEFTEVRGGPTKSGGWYAAKTVVPVQNNG >gi|312979630|gb|ACRM01000035.1| GENE 6 2383 - 2712 331 109 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MIIIFWKSKNKKNSTNNNNDKLINIYSVQELEFYLKGSVTTLQEDFGAPWSLSSSAHDER ACQAMVFMIMQEFGFRFVSEDEEVKQFIKGLSDDVTSKKFSKYLSKGIR >gi|312979630|gb|ACRM01000035.1| GENE 7 2856 - 3593 614 245 aa, chain + ## HITS:1 COG:no KEGG:LACR_E4 NR:ns ## KEGG: LACR_E4 # Name: not_defined # Def: hypothetical protein # Organism: L.lactis_SK11 # Pathway: not_defined # 5 233 1 243 253 103 33.0 6e-21 MEEKLTFNIDEITKNNFQYIKLSEIDSTGWKNKNDYKKLIKSTFKVSSSDLRKFIEDTFG IRMSIDMSHNRNQLNSLIKKVTKTQKGKRTYLELNEYIELIELEEFNAFIVDNVENDFKV KDRKKLRNELMYLQINRYKNTENYKNDNMLELQSFAYYLSLFNTLEKHLNFWYSQPFLKD TYVETPNKDLNNLLKVINGHYENEKTTKYKFQSIHNVINTSELQKIYIFLRDIQELDNKK EDHYK >gi|312979630|gb|ACRM01000035.1| GENE 8 3708 - 4161 366 151 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 151 1 151 224 252 96.0 2e-67 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ IWKKKHKKANYKWRIDETYIKIKGKWSYLYRAIDAEGYTLDIWLRKQRDNHSAYAFIKRL IKQFGKPQKVITDQAPSTKVAMAKVIKGLNL Prediction of potential genes in microbial genomes Time: Sun May 29 09:44:26 2011 Seq name: gi|312979629|gb|ACRM01000036.1| Staphylococcus hominis subsp. hominis C80 cont1.36, whole genome shotgun sequence Length of sequence - 1687 bp Number of predicted genes - 3, with homology - 2 Number of transcription units - 3, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 2 - 565 286 ## COG3316 Transposase and inactivated derivatives + Term 615 - 650 1.0 + Prom 664 - 723 8.4 2 2 Tu 1 . + CDS 749 - 1120 382 ## + Term 1130 - 1176 14.1 + Prom 1176 - 1235 5.2 3 3 Tu 1 . + CDS 1255 - 1687 335 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979629|gb|ACRM01000036.1| GENE 1 2 - 565 286 187 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 187 38 224 224 328 97.0 3e-90 RGVNVHHSTVYRWVQEYAPILYQIWKKKHKKANYKWRIDETYIKIKGKWSYLYRAIDAEG YTLDIWLRKQRDNHSAYAFIKRLIKQFGKPQKVITDQAPSTKVAMAKVIKGFKLKPDCHC TSKYLNNLIEQDHRHIKVRKTRYQSINIAKNTLKGIECIYALYKKNRRSLQIYGFSPCNE ISIMLAS >gi|312979629|gb|ACRM01000036.1| GENE 2 749 - 1120 382 123 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MVIENKNQIKDLESVLVLMNETRCILSTEVTKYNRGEGYNQFYILYLINDLKNLYRQANS YIDTREEFNNNKEIQNYSQLIFDLEEILKSDEFNEKFLDKEHPHVNGTSTMSKRLSRFED RAK >gi|312979629|gb|ACRM01000036.1| GENE 3 1255 - 1687 335 144 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 144 1 144 224 240 96.0 6e-64 MNYFRYKQFNKDVITVAVGYYLRYALSYRNISEILRERGVNVHHSTVYRWVQEYAPILYQ IWKKKHKKANYKWRIDETYIKIKGKWSYLYRAIDAEGYTLDIWLRKQRDNHSAYVFIKRL IKQFGKPQKVITDQAPSTKVAMAK Prediction of potential genes in microbial genomes Time: Sun May 29 09:44:32 2011 Seq name: gi|312979628|gb|ACRM01000037.1| Staphylococcus hominis subsp. hominis C80 cont1.37, whole genome shotgun sequence Length of sequence - 680 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . + CDS 52 - 679 442 ## COG3316 Transposase and inactivated derivatives Predicted protein(s) >gi|312979628|gb|ACRM01000037.1| GENE 1 52 - 679 442 209 aa, chain + ## HITS:1 COG:SA0026 KEGG:ns NR:ns ## COG: SA0026 COG3316 # Protein_GI_number: 15925732 # Func_class: L Replication, recombination and repair # Function: Transposase and inactivated derivatives # Organism: Staphylococcus aureus N315 # 1 209 1 209 224 362 98.0 1e-100 MNYFRYKQFNKDVITVAVGYYLRYALSYRDISEILRERGVNVHHSTVYRWVQEYAPILYQ IWKKKHKKANYKWRIDETYIKIKGKWSYLYRAIDAEGYTLDIWLRKQRDNHSAYAFIKRL IKQFGKPQKVITDQAPSTKVAMAKVIKGFKLKPDCHCTSKYLNNLIEQDHRHIKVRKTRY QSINTAKNTLKGIECIYALYKKNRRSLQI Prediction of potential genes in microbial genomes Time: Sun May 29 09:44:36 2011 Seq name: gi|312979627|gb|ACRM01000038.1| Staphylococcus hominis subsp. hominis C80 cont1.38, whole genome shotgun sequence Length of sequence - 16138 bp Number of predicted genes - 24, with homology - 17 Number of transcription units - 19, operones - 5 average op.length - 2.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) + Prom 2 - 61 4.1 1 1 Op 1 . + CDS 292 - 417 89 ## 2 1 Op 2 . + CDS 483 - 1091 644 ## COG1961 Site-specific recombinases, DNA invertase Pin homologs + Term 1188 - 1221 5.4 - Term 1176 - 1209 5.4 3 2 Tu 1 . - CDS 1301 - 1861 359 ## SAVP031 transcriptional regulator - Prom 1939 - 1998 8.0 + Prom 1902 - 1961 5.4 4 3 Tu 1 . + CDS 2045 - 3589 1601 ## COG0477 Permeases of the major facilitator superfamily + Term 3647 - 3701 10.4 + Prom 3641 - 3700 8.5 5 4 Tu 1 . + CDS 3794 - 4354 298 ## SAVP033 hypotehtical protein 6 5 Op 1 24/0.000 - CDS 4688 - 5461 613 ## COG1277 ABC-type transport system involved in multi-copper enzyme maturation, permease component 7 5 Op 2 . - CDS 5463 - 6158 235 ## PROTEIN SUPPORTED gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein - Prom 6212 - 6271 9.4 8 6 Op 1 . + CDS 6418 - 6762 318 ## SH2602 hypothetical protein 9 6 Op 2 . + CDS 6773 - 6931 172 ## + Term 7007 - 7058 2.2 - Term 7052 - 7112 11.4 10 7 Op 1 . - CDS 7154 - 7351 297 ## gi|228475848|ref|ZP_04060562.1| conserved hypothetical protein - Prom 7381 - 7440 1.8 11 7 Op 2 . - CDS 7450 - 7806 431 ## COG1396 Predicted transcriptional regulators - Prom 7831 - 7890 5.8 12 8 Tu 1 . - CDS 8040 - 8204 131 ## - Prom 8272 - 8331 5.3 + Prom 8731 - 8790 13.8 13 9 Tu 1 . + CDS 8870 - 9076 80 ## + Prom 9826 - 9885 7.0 14 10 Tu 1 . + CDS 9906 - 10097 324 ## SERP2215 hypothetical protein + Term 10113 - 10148 4.0 - Term 10351 - 10397 14.1 15 11 Tu 1 . - CDS 10412 - 11137 619 ## SEA0001 replication-associated protein - Prom 11174 - 11233 6.8 + Prom 11243 - 11302 7.8 16 12 Tu 1 . + CDS 11522 - 12478 737 ## SEA0033 replication-associated protein RepA + Term 12490 - 12527 4.0 + Prom 12516 - 12575 4.4 17 13 Tu 1 . + CDS 12646 - 12756 145 ## + Term 12772 - 12809 7.3 18 14 Tu 1 . - CDS 13498 - 13758 130 ## gi|282166163|gb|ADA80181.1| hypothetical protein SAP105B_017 - Prom 13851 - 13910 8.7 + Prom 13929 - 13988 9.0 19 15 Op 1 . + CDS 14225 - 14413 132 ## 20 15 Op 2 . + CDS 14456 - 14704 238 ## gi|228475391|ref|ZP_04060110.1| hypothetical protein STAHO0001_2197 + Prom 14835 - 14894 5.1 21 16 Tu 1 . + CDS 14914 - 15168 226 ## gi|228475392|ref|ZP_04060111.1| hypothetical protein STAHO0001_2212 + Prom 15175 - 15234 7.5 22 17 Tu 1 . + CDS 15291 - 15482 204 ## gi|228475394|ref|ZP_04060113.1| conserved hypothetical protein + Prom 15506 - 15565 4.4 23 18 Tu 1 . + CDS 15712 - 15789 72 ## + Prom 15818 - 15877 7.5 24 19 Tu 1 . + CDS 15978 - 16137 82 ## gi|228475397|ref|ZP_04060116.1| conserved hypothetical protein Predicted protein(s) >gi|312979627|gb|ACRM01000038.1| GENE 1 292 - 417 89 41 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MILMGFSLLLNTPDTWLNNNFKHKSRDNYICIFKVHPNHTK >gi|312979627|gb|ACRM01000038.1| GENE 2 483 - 1091 644 202 aa, chain + ## HITS:1 COG:pli0059 KEGG:ns NR:ns ## COG: pli0059 COG1961 # Protein_GI_number: 18450341 # Func_class: L Replication, recombination and repair # Function: Site-specific recombinases, DNA invertase Pin homologs # Organism: Listeria innocua # 1 197 1 197 199 266 71.0 3e-71 MIIGYARVSSIDQNLERQLDNLKTFGVEKIFTEKQSGKSVENRPVFQEALNFVRMGDRFV VESIDRLGRDYDEIIETVSYLKEKDVQLMITSLPMMNEVIGNPLLDKFMKDLIVQILAMV SEQERNESKRRQAQGIQVAKEKGVYKGRPLLYSPNAKDPQKRIIYHRVVEMLEEGKAISK IAKEVNITRQTVYRIKHDKGSS >gi|312979627|gb|ACRM01000038.1| GENE 3 1301 - 1861 359 186 aa, chain - ## HITS:1 COG:no KEGG:SAVP031 NR:ns ## KEGG: SAVP031 # Name: qacR # Def: transcriptional regulator # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 186 3 188 188 306 98.0 3e-82 MKDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQ EQWKKEQIKCKTNREKFYLYNELSLTTEYYYPLQNAIIEFCTEYYKTNSINEKMNKLENK YIDAYHVIFKEGNLNGEWCINDVNAVSKIAANAVNGIVTFTHEQNINERIKLMNKFSQIF LNGLSK >gi|312979627|gb|ACRM01000038.1| GENE 4 2045 - 3589 1601 514 aa, chain + ## HITS:1 COG:Cgl2560 KEGG:ns NR:ns ## COG: Cgl2560 COG0477 # Protein_GI_number: 19553810 # Func_class: G Carbohydrate transport and metabolism; E Amino acid transport and metabolism; P Inorganic ion transport and metabolism; R General function prediction only # Function: Permeases of the major facilitator superfamily # Organism: Corynebacterium glutamicum # 13 429 12 428 494 233 36.0 1e-60 MISFFTKTTDMMTSKKRWTALVVLAVSLFVVTMDMTILIMALPELVRELEPSGTQQLWIV DIYSLVLAGFIIPLSAFADKWGRKKALLTGFALFGLVSLAIFFAESAEFVIAIRFLLGIA GALIMPTTLSMIRVIFENPKERATALAVWSIVSSIGAVFGPIIGGALLEQFSWHSAFLIN VPFVIIAVVAGLFLLPESKLSKEKSHSWDIPSTILSIAGMIGLVWSIKEFSKEGLADIIP WVVIVLAITMIVIFVKRNLSSSDPMLDVRLFKKRSFSAGTIAAFMTMFAMTSVLLLASQW LQVVEELSPFKAGLYLLPMAIGDMVFAPIAPGLAARFGPKIVLPSGIGIAAIGMFIMYFF GHPLSYSTMALALILVGAGTASLAVASALIMLETPTSKAGNAAAVEESMYDLGNVFGVAV LGSLSSMLYRVFLDISSFSSKGIVGDLAHVAEESVVGAVEVAKATGIKQLANEAVTSFND AFVATALVGGIIMIIISIVVYLLIPKSLDITKQK >gi|312979627|gb|ACRM01000038.1| GENE 5 3794 - 4354 298 186 aa, chain + ## HITS:1 COG:no KEGG:SAVP033 NR:ns ## KEGG: SAVP033 # Name: not_defined # Def: hypotehtical protein # Organism: S.aureus_Mu50 # Pathway: not_defined # 1 186 1 186 186 249 100.0 3e-65 MNRADIFKIFDVELNITIFLGALVATFIYFISYMNNVNELITLCLTLAFPAYLLKISRSF EVILLEEKIKNSKIKICDKDRIEREILVKKNLIDELLFPNRVIKKYTLTILIYSIGIIIL LLLCNMLSYGIGENVNFIWRLLACYVTSVTVIIVALIIMIMIFDLIIGLLLNFQIFLKNK KYDDFL >gi|312979627|gb|ACRM01000038.1| GENE 6 4688 - 5461 613 257 aa, chain - ## HITS:1 COG:SA2303 KEGG:ns NR:ns ## COG: SA2303 COG1277 # Protein_GI_number: 15928094 # Func_class: R General function prediction only # Function: ABC-type transport system involved in multi-copper enzyme maturation, permease component # Organism: Staphylococcus aureus N315 # 1 257 1 256 256 231 63.0 1e-60 MGTLVKQECFKLFKKKSTYILPIIIIIIMLALAILGNQYSDVFNLKESFKGGFSSFSWVV FLMIIQASTIISMEFHYGTIKNLLYRNYSRTSIIVSKFITLFIYSLIIFLIFIIISLLLH LIFNGDTSLTEHSKNHISLLNSMLLTALGTFVGMWLVMSLTLLISCIMKSPGVSIAVGIV FYFAASIISGLLTAVIDKWEWLKWNPLNMMNIMIQITDNDTFKKITKLELHELFIGNIIY IVIFLVLVVVAFKKKNV >gi|312979627|gb|ACRM01000038.1| GENE 7 5463 - 6158 235 231 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|169795303|ref|YP_001713096.1| ABC transporter ATP-binding protein [Acinetobacter baumannii AYE] # 4 214 5 229 311 95 32 3e-19 MKVLEVNNLTKKIKNKTILKDISFSLNEGEIVGLVGANGAGKTTLMKVILGFSHYQSGTY EITENKNTQSNTGALIESPGLYPFMSGYDNLKLFNESKDKNAIDEIVDKLNMKEYIHKKA KSYSLGMKQKLGIAIAFLNNPKLIILDEPMNGLDPKAVRDVRELILETAKQGTTFLISSH ILSELVKITDSILIINDGSIIKETTKEELNQEDENDLENVLLNIIDKEGEM >gi|312979627|gb|ACRM01000038.1| GENE 8 6418 - 6762 318 114 aa, chain + ## HITS:1 COG:no KEGG:SH2602 NR:ns ## KEGG: SH2602 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 88 1 82 86 100 72.0 2e-20 MIFIYIIFSAILLYYVLKYGIRNGFAELEANKDNLIYYKKSACLLEEIGNHYRSISMSSS KQVQVIEEAKAIYNESFDIILSEEKPKIIFEQLTEKKEEILKLNIDNKNYSKVE >gi|312979627|gb|ACRM01000038.1| GENE 9 6773 - 6931 172 52 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MKEKLKQSWYSLLVIAITIVTWLIALPFSPKVKLMKNRIREYRKKKEFLKKL >gi|312979627|gb|ACRM01000038.1| GENE 10 7154 - 7351 297 65 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|228475848|ref|ZP_04060562.1| ## NR: gi|228475848|ref|ZP_04060562.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 65 1 65 65 91 100.0 1e-17 MNRNAFLDKGYMIAMILNVLFLAGLTFITQTENLYLIIPFAILMLINAIYLVVKAAKYNK NKSEI >gi|312979627|gb|ACRM01000038.1| GENE 11 7450 - 7806 431 118 aa, chain - ## HITS:1 COG:SAP028 KEGG:ns NR:ns ## COG: SAP028 COG1396 # Protein_GI_number: 16119228 # Func_class: K Transcription # Function: Predicted transcriptional regulators # Organism: Staphylococcus aureus N315 # 1 79 1 79 79 109 65.0 2e-24 MELANVIKKYRKLNNWSQDELADILNVSRQSVSKWESGKNYPSLDILVVMSDLFGVTLDQ LVKGDIELKKQILNGDYHDGAYKRRPTTMAGFLADYWWTIFPVGGFLVWAFYAISWSF >gi|312979627|gb|ACRM01000038.1| GENE 12 8040 - 8204 131 54 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MVVYISCTFLILIAIVSLIKNTVSDKKDKKLDVLSSVLLLISSILLLIYGIVIN >gi|312979627|gb|ACRM01000038.1| GENE 13 8870 - 9076 80 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSKFIKNRNTLIYNSKIPFRAFRDIYRIINRLKSNRINRIWIKKSILFIGLTTTEAYEIN KNNSIQTI >gi|312979627|gb|ACRM01000038.1| GENE 14 9906 - 10097 324 63 aa, chain + ## HITS:1 COG:no KEGG:SERP2215 NR:ns ## KEGG: SERP2215 # Name: not_defined # Def: hypothetical protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 61 1 61 61 99 90.0 3e-20 MSVKNVLKQSWEDLKNLELNFKNVSIVVVVTFILSNILTPLAGIPVGLLGSAYWIQNRKR KQS >gi|312979627|gb|ACRM01000038.1| GENE 15 10412 - 11137 619 241 aa, chain - ## HITS:1 COG:no KEGG:SEA0001 NR:ns ## KEGG: SEA0001 # Name: not_defined # Def: replication-associated protein # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 241 1 245 245 222 81.0 1e-56 MKSVKEISKELGVSKQTIFNNIKRLDIETIKKDNTSFIKNDIDVEKIIQRVTRNKKKYGF EDTLTNSEKVKKDNSQKESKHNVQIIELLEKQIDTLNKQLEKQEKRHEVTVEFYRKELQE RSKLLENQQVLALESNKKIQKLESQLEEERQLNNSFDTVTSNRQNINPQEATFTGESQNI NQQQKKSQPTENEINHKDVSEEKKNDRTKEDKFVEETKSNSDDNRELEPPKKGFWSRFFG N >gi|312979627|gb|ACRM01000038.1| GENE 16 11522 - 12478 737 318 aa, chain + ## HITS:1 COG:no KEGG:SEA0033 NR:ns ## KEGG: SEA0033 # Name: repA # Def: replication-associated protein RepA # Organism: S.epidermidis_RP62A # Pathway: not_defined # 1 318 27 344 344 474 89.0 1e-132 MSRKNIKNQASQNFYMLHKALFVNEKYKKLSDSAKVTYAILNDRVSLSIKNNWIDDNGDI YFIFTNESLQNILDKSKNTITKIKKELQEVGLLEQIRTGFNKPNKLYLHDIETNISVEKN IQTSSVTHDNKESQNLGLQNPKFRDSRNSKFGTPESQILDPNDTDYNNTDYNNTDYNDTY DLNDKKLTYPSNHTNYTNHYNSKFNDEALKFQLLEELPQSIQRYLSNFSVNEIKIIKPVL LKAKTSFNNSIDTYYLLEDMEIEILHVLKRFKAMLIQKNETVEAMQGYLMKSLKSEFAEM HTLNKRRDNLPITSLFNQ >gi|312979627|gb|ACRM01000038.1| GENE 17 12646 - 12756 145 36 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSTKKKIKVTLAMINVLLTAVELYLQWQLSKSENEL >gi|312979627|gb|ACRM01000038.1| GENE 18 13498 - 13758 130 86 aa, chain - ## HITS:1 COG:no KEGG:no NR:gi|282166163|gb|ADA80181.1| ## NR: gi|282166163|gb|ADA80181.1| hypothetical protein SAP105B_017 [Staphylococcus epidermidis] # 1 75 1 75 75 71 62.0 2e-11 MINIEFGIDQKVFHQIQKVKQMNELLRLLLSDFIFDINTKSRSLKSLWLKKLRLLRVSTT TEAYEINKKRSLQTIQNGLVTIVKSL >gi|312979627|gb|ACRM01000038.1| GENE 19 14225 - 14413 132 62 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MGKMLYKTPLNALKKNLKIVNKDILIFYKSQVVIKIKNKPICKIQTGFVNYAYFAFYKFK LS >gi|312979627|gb|ACRM01000038.1| GENE 20 14456 - 14704 238 82 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475391|ref|ZP_04060110.1| ## NR: gi|228475391|ref|ZP_04060110.1| hypothetical protein STAHO0001_2197 [Staphylococcus hominis SK119] # 1 82 1 82 82 126 100.0 4e-28 MITKSIKYPYAKLTFDVLGILSSITFLILIAINFYADFKSNGTSKIGVEWTGNDFVLGVV LICIILVCAITSFILKSIKNTK >gi|312979627|gb|ACRM01000038.1| GENE 21 14914 - 15168 226 84 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475392|ref|ZP_04060111.1| ## NR: gi|228475392|ref|ZP_04060111.1| hypothetical protein STAHO0001_2212 [Staphylococcus hominis SK119] # 1 84 1 84 84 119 100.0 7e-26 MGKRVVNGIKEGLSVFVPLVIVAITLNFLKLDIGYNRFWTYLGNLGIINFFDEKPLNGLV VLGFLLGLIVFVLALFFPDKKKNK >gi|312979627|gb|ACRM01000038.1| GENE 22 15291 - 15482 204 63 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475394|ref|ZP_04060113.1| ## NR: gi|228475394|ref|ZP_04060113.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 63 1 63 63 100 100.0 4e-20 MYHYDATHIIALILNGFFITFMPLTIKYGNIFITIVWIILGVINAIYIYRKNAKMKKEQG NKK >gi|312979627|gb|ACRM01000038.1| GENE 23 15712 - 15789 72 25 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MSIWFFIVIAVLGSIFILWRLMFRG >gi|312979627|gb|ACRM01000038.1| GENE 24 15978 - 16137 82 53 aa, chain + ## HITS:1 COG:no KEGG:no NR:gi|228475397|ref|ZP_04060116.1| ## NR: gi|228475397|ref|ZP_04060116.1| conserved hypothetical protein [Staphylococcus hominis SK119] # 1 53 1 53 54 63 100.0 3e-09 MKWILFSIQMILAIFLVFFAYKQMNQNYLDSWFGIYVVLFMIFVYWNAKRYHN Prediction of potential genes in microbial genomes Time: Sun May 29 09:45:49 2011 Seq name: gi|312979626|gb|ACRM01000039.1| Staphylococcus hominis subsp. hominis C80 cont1.39, whole genome shotgun sequence Length of sequence - 1042 bp Number of predicted genes - 1, with homology - 1 Number of transcription units - 1, operones - 0 average op.length - 0.0 N Tu/Op Conserved S Start End Score pairs(N/Pv) 1 1 Tu 1 . - CDS 3 - 1041 1497 ## SH2426 hypothetical protein Predicted protein(s) >gi|312979626|gb|ACRM01000039.1| GENE 1 3 - 1041 1497 346 aa, chain - ## HITS:1 COG:no KEGG:SH2426 NR:ns ## KEGG: SH2426 # Name: not_defined # Def: hypothetical protein # Organism: S.haemolyticus # Pathway: not_defined # 1 297 1339 1624 1855 187 55.0 6e-46 PGTVNVPVTVTYPDGTQDHVTVPVTTNEQADNDAYQPTTDEVTKDYGDPTTEGDITGAVT IPDYPSEKGTPTITVDDPSTLPDGNTPGTTEVDVTVTYPDGTKDHVKVPVTVGEETQANT NDPSYDNVTVDPGETIKVPQTGDNTMPDGTQYEIDKSKIPSGWEVTVDHNTGELTVKPSE DAVPGTSIVIPVTVTYPDGSTEEASTTITVGDVIDIPAPTVNPVDDNDTEVTGTDGTPGN TIVVTFPDGSTSEGNIDEDGNWTVDIPDGVDVDKGDVITVVEKDKDGKVSTPTKVVVGEN CDNPSNGDNSGDGAGNDSSDGDNSEDGAGNDSSDGDNSGDGAGNDS Prediction of potential genes in microbial genomes Time: Sun May 29 09:46:11 2011 Seq name: gi|312979625|gb|ACRM01000040.1| Staphylococcus hominis subsp. hominis C80 cont1.40, whole genome shotgun sequence Length of sequence - 38697 bp Number of predicted genes - 39, with homology - 37 Number of transcription units - 8, operones - 6 average op.length - 6.2 N Tu/Op Conserved S Start End Score pairs(N/Pv) - SSU_RRNA 1 - 401 99.0 # EU373358 [D:1..1518] # 16S ribosomal RNA # Staphylococcus sp. HNL18 # Bacteria; Firmicutes; Bacillales; Staphylococcus. - TRNA 529 - 604 89.0 # Ala TGC 0 0 - TRNA 621 - 694 86.8 # Pro TGG 0 0 - TRNA 718 - 794 76.7 # Arg ACG 0 0 - TRNA 806 - 894 75.3 # Leu TAA 0 0 - TRNA 903 - 977 94.9 # Gly GCC 0 0 - TRNA 996 - 1068 89.9 # Lys TTT 0 0 1 1 Tu 1 . + CDS 1062 - 1268 164 ## + Term 1515 - 1565 -0.9 - TRNA 1074 - 1149 92.9 # Thr TGT 0 0 - TRNA 1161 - 1236 95.7 # Val TAC 0 0 - 5S_RRNA 1179 - 1230 94.0 # AF302131 [D:490..741] # 5S ribosomal RNA # Streptococcus agalactiae # Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; Streptococcus. - 5S_RRNA 1247 - 1361 98.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. 2 2 Tu 1 . - CDS 1260 - 1376 66 ## - Prom 1626 - 1685 11.6 - Term 1637 - 1672 5.1 3 3 Op 1 1/0.000 - CDS 1692 - 3182 2095 ## COG1190 Lysyl-tRNA synthetase (class II) - Prom 3262 - 3321 7.6 - Term 3269 - 3330 5.8 4 3 Op 2 17/0.000 - CDS 3344 - 3823 313 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 5 3 Op 3 15/0.000 - CDS 3823 - 4188 149 ## PROTEIN SUPPORTED gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 6 3 Op 4 2/0.000 - CDS 4166 - 4969 935 ## COG0294 Dihydropteroate synthase and related enzymes - Prom 5006 - 5065 6.5 - Term 5065 - 5115 12.0 7 4 Op 1 3/0.000 - CDS 5157 - 6089 974 ## PROTEIN SUPPORTED gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 - Prom 6194 - 6253 9.6 - Term 6234 - 6273 6.1 8 4 Op 2 1/0.000 - CDS 6286 - 7170 1077 ## COG1281 Disulfide bond chaperones of the HSP33 family - Prom 7210 - 7269 8.5 - Term 7319 - 7368 5.5 9 5 Op 1 11/0.000 - CDS 7382 - 9514 1385 ## PROTEIN SUPPORTED gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 - Prom 9699 - 9758 7.8 10 5 Op 2 10/0.000 - CDS 9798 - 10337 749 ## COG0634 Hypoxanthine-guanine phosphoribosyltransferase 11 5 Op 3 2/0.000 - CDS 10338 - 11639 804 ## COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control - Prom 11779 - 11838 3.9 - Term 11675 - 11727 6.1 12 6 Op 1 4/0.000 - CDS 11847 - 12248 359 ## PROTEIN SUPPORTED gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein - Prom 12302 - 12361 8.8 13 6 Op 2 5/0.000 - CDS 12383 - 12778 501 ## COG2919 Septum formation initiator 14 6 Op 3 3/0.000 - CDS 12814 - 13095 473 ## COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) 15 6 Op 4 4/0.000 - CDS 13092 - 14282 1521 ## COG3956 Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain 16 6 Op 5 2/0.000 - CDS 14285 - 15859 1414 ## COG2244 Membrane protein involved in the export of O-antigen and teichoic acid 17 6 Op 6 7/0.000 - CDS 15843 - 19352 4484 ## COG1197 Transcription-repair coupling factor (superfamily II helicase) 18 6 Op 7 22/0.000 - CDS 19349 - 19921 804 ## COG0193 Peptidyl-tRNA hydrolase - Prom 20147 - 20206 8.6 - Term 20177 - 20218 0.1 19 6 Op 8 9/0.000 - CDS 20228 - 20893 1081 ## PROTEIN SUPPORTED gi|228476234|ref|ZP_04060937.1| ribosomal protein L25, Ctc-form - Prom 20960 - 21019 4.2 20 6 Op 9 11/0.000 - CDS 21066 - 22031 1259 ## COG0462 Phosphoribosylpyrophosphate synthetase - Prom 22162 - 22221 7.0 - Term 22053 - 22105 -0.6 21 6 Op 10 4/0.000 - CDS 22242 - 23597 1715 ## COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) - Prom 23629 - 23688 8.6 22 6 Op 11 2/0.000 - CDS 23860 - 24171 410 ## COG2088 Uncharacterized protein, involved in the regulation of septum location 23 6 Op 12 3/0.000 - CDS 24240 - 24620 519 ## COG0251 Putative translation initiation inhibitor, yjgF family 24 6 Op 13 4/0.000 - CDS 24636 - 25460 675 ## COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins 25 6 Op 14 2/0.000 - CDS 25475 - 26323 559 ## COG1947 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase - Prom 26388 - 26447 12.2 - Term 26495 - 26537 6.1 26 7 Op 1 2/0.000 - CDS 26600 - 26863 211 ## COG4466 Uncharacterized protein conserved in bacteria - Prom 26883 - 26942 6.9 27 7 Op 2 7/0.000 - CDS 26963 - 27853 1032 ## COG0030 Dimethyladenosine transferase (rRNA methylation) 28 7 Op 3 3/0.000 - CDS 27856 - 28410 633 ## COG1658 Small primase-like proteins (Toprim domain) - Prom 28435 - 28494 11.1 29 8 Op 1 8/0.000 - CDS 28555 - 29325 1063 ## COG0084 Mg-dependent DNase 30 8 Op 2 1/0.000 - CDS 29349 - 31325 2358 ## COG0143 Methionyl-tRNA synthetase - Prom 31366 - 31425 7.3 31 8 Op 3 4/0.000 - CDS 31551 - 32393 1003 ## COG0313 Predicted methyltransferases 32 8 Op 4 6/0.000 - CDS 32395 - 32643 192 ## COG2827 Predicted endonuclease containing a URI domain 33 8 Op 5 4/0.000 - CDS 32636 - 33361 677 ## COG4123 Predicted O-methyltransferase - Prom 33401 - 33460 4.8 - Term 33370 - 33433 4.8 34 8 Op 6 5/0.000 - CDS 33483 - 33875 469 ## COG4467 Uncharacterized protein conserved in bacteria 35 8 Op 7 7/0.000 - CDS 33892 - 34695 908 ## COG1774 Uncharacterized homolog of PSP1 36 8 Op 8 2/0.000 - CDS 34696 - 35622 946 ## COG0470 ATPase involved in DNA replication - Prom 35695 - 35754 6.0 - Term 35712 - 35749 1.1 37 8 Op 9 4/0.000 - CDS 35798 - 36127 495 ## COG3870 Uncharacterized protein conserved in bacteria 38 8 Op 10 4/0.000 - CDS 36155 - 36772 712 ## COG0125 Thymidylate kinase 39 8 Op 11 . - CDS 36774 - 38111 1144 ## COG1982 Arginine/lysine/ornithine decarboxylases - Prom 38150 - 38209 8.6 - 5S_RRNA 38315 - 38429 99.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus. - 5S_RRNA 38602 - 38697 95.0 # AF142677 [R:48033..48709] # 5S ribosomal RNA # Bacillus megaterium # Bacteria; Firmicutes; Bacillales; Bacillaceae; Bacillus. Predicted protein(s) >gi|312979625|gb|ACRM01000040.1| GENE 1 1062 - 1268 164 68 aa, chain + ## HITS:0 COG:no KEGG:no NR:no MAQRWCRPEDLNPQPTDYKSVALPIELGRLKSKWWRMTGSNRRPSACKADALPAELILLS SMPGNVLL >gi|312979625|gb|ACRM01000040.1| GENE 2 1260 - 1376 66 38 aa, chain - ## HITS:0 COG:no KEGG:no NR:no MSKLLSGDNGKEATPVPMPNTEVKLLSADGSWTDVPLE >gi|312979625|gb|ACRM01000040.1| GENE 3 1692 - 3182 2095 496 aa, chain - ## HITS:1 COG:SA0475 KEGG:ns NR:ns ## COG: SA0475 COG1190 # Protein_GI_number: 15926194 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Lysyl-tRNA synthetase (class II) # Organism: Staphylococcus aureus N315 # 1 496 1 495 495 880 89.0 0 MSEEMNDQMQVRRQKLQELIDLGIDPFGKRFERTATASELKEKWDHFSKEELHEKEDESH VSIAGRLMTKRGKGKAGFAHVQDLTGQIQIYVRKDQIGEEPFDNLWKTTDLGDIVGIEGV MFKTNTGELSVKAKSFTLLSKALRPLPDKFHGLQDIEQRYRQRYLDLITNQDSTRTFINR SKIIQEMRNYLNQRGYLEVETPMMHQIAGGAAARPFVTHHNALDATLYMRIAIELHLKRL IVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYHDIMDLTESMVRYIAQTVLG SAKVQYNGEEIDLESDWKRLHIVDAVKEATGVNFYNVKTDEEAKALAKAHGIEITENMRY GHILNEFFEQKVEETLIQPTFIYGHPIEISPLAKKNPEDPRFTDRFELFIVGREHANAFT ELNDPIDQRERFEAQLVEKEQGNDEAHEMDEDYIEALEYGMPPTGGLGIGIDRLVMLLTD SPSIRDVLLFPYMRQK >gi|312979625|gb|ACRM01000040.1| GENE 4 3344 - 3823 313 159 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 3 156 121 270 278 125 44 3e-40 MVQAYLGLGSNIGDRKQQLLKAIDLIGNIKGIKVTKQSSIYETAPIGYTDQPNFLNLCLE IETELSPQQLLKHCLDIEQQLHRVREIRWGPRTLDIDILLYSDDIIETDNLSVPHPRMQE RAFVLIPLNDIASDKQNPRLNQKIHDLVFPDDTVKKYKD >gi|312979625|gb|ACRM01000040.1| GENE 5 3823 - 4188 149 121 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148994682|ref|ZP_01823786.1| 50S ribosomal protein L13 [Streptococcus pneumoniae SP9-BS68] # 3 121 2 120 278 62 28 3e-40 MSDMIFLKGMKFYGYHGALTAENEIGQIFLVDVTLKVDLSKAGQTDNVKDTVHYGEVFED VKDIVEGPPCNLIEHLAERIAKRINSHYNRVMETKVRITKENPPIPGHYDGVGIEIVREN R >gi|312979625|gb|ACRM01000040.1| GENE 6 4166 - 4969 935 267 aa, chain - ## HITS:1 COG:SA0472 KEGG:ns NR:ns ## COG: SA0472 COG0294 # Protein_GI_number: 15926191 # Func_class: H Coenzyme transport and metabolism # Function: Dihydropteroate synthase and related enzymes # Organism: Staphylococcus aureus N315 # 1 267 1 267 267 405 74.0 1e-113 MGKTKIMGILNVTPDSFSDGGQYNSIDNAVTRAKEMIDEGVDIIDVGGVSTRPGHTEVSL EEEMQRVVPVVEELVKLNVQISIDTYRSEVAEACLRLGATMINDQWAGLYDPHILDVVAK YEAEIVLMHNGDGHRDQPVVEEMLLTLIKQANKAEMAGIPKHKIWLDPGIGFAKSRKEEN EVMARLDELVATEYPVLLATSRKRFIREMISTDTTPKERDEATAATTAYGIMKGIKAVRV HNVQLNVRLAQGIDFLKENENERHDLS >gi|312979625|gb|ACRM01000040.1| GENE 7 5157 - 6089 974 310 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|148988856|ref|ZP_01820271.1| 50S ribosomal protein L9 [Streptococcus pneumoniae SP6-BS73] # 8 309 6 307 308 379 61 1e-104 MAQKPVENITQIIGNTPVVKLRNVVDEDAADVYVKLEYQNPGGSVKDRIALAMIEKAEKE GKIKPGDTIVEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSSERRNLLKAYGAELVLTPG SEAMKGAIKKAKELKEEHGYFEPQQFENPANPEIHALTTGPELVEQFEGKQIDAFLAGVG TGGTLSGVGKVLKEKYPNVEIVAIEPEGSPVLSGGEPGPHKLQGLGAGFVPDTLNTNIYD SIIKVGNETAMETSRRVAKEEGILAGISSGAAIYAAIEKAKELGKGKTVVTVLPSNGERY LSTPLYSFDD >gi|312979625|gb|ACRM01000040.1| GENE 8 6286 - 7170 1077 294 aa, chain - ## HITS:1 COG:SA0470 KEGG:ns NR:ns ## COG: SA0470 COG1281 # Protein_GI_number: 15926189 # Func_class: O Posttranslational modification, protein turnover, chaperones # Function: Disulfide bond chaperones of the HSP33 family # Organism: Staphylococcus aureus N315 # 1 292 1 292 293 516 86.0 1e-146 MTHDYIVKSLAFDGEVRAYAALTTESVQEGQTRHYTWPTASAAMGRTMTATLLMGAMLKG DQKLTVTVDGKGPIGRIIADADAQGNVRAYVDHPQTHFPLNDQGKLDVRRAVGTEGAIQV VKDVGMKDYFSGASPIVSGELGEDFTYYFATSEQTPSSVGLGVLVNPDNSIKAAGGFIIQ VMPGAKEETITKLENAINQMQPVSKLIEQGLTPEGILNEILGEENVQILETMDAQFECNC SHEKFLNAIKGLGEAEIEDMIKEDHGAEAVCHFCGNKYHYSEGELQELLDTIKQ >gi|312979625|gb|ACRM01000040.1| GENE 9 7382 - 9514 1385 710 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|157803230|ref|YP_001491779.1| 50S ribosomal protein L9 [Rickettsia canadensis str. McKiel] # 1 635 1 632 636 538 46 1e-152 MQKAFRNVLVIAIIGVIIFGVFSYINGNGNTPKQLSYSQFVEKLDKGDLKTLEIQPEQNV YLVSGKTKNDEDYSSTILYNNEKDLQQITNEARSQKGLDFTVKEEEKQSVFVSMLTTLIP VLIIAFLFIFFLSQAQGGGGGGRMMNFGKSKAKMYDNQKRRVRFSDVAGADEEKQELIEI VDFLKDNKKFKKMGSRIPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVG VGASRVRDLFENAKKNAPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGE NEGIIMIAATNRPDILDPALLRPGRFDRQIQVGRPDVKGREAILHVHAKNKPLDETVDLK AISQRTPGFSGADLENLLNEASLIAAREGKNKIDMRDIEEATDRVIAGPAKKSRVISDKE RNIVAHHEAGHTVIGMVLDEAEVVHKVTIVPRGQAGGYAMMLPKQDRFLMTEPELLDKIC GLLGGRVSEDINFHEVSTGASNDFERATQIARSMVTEYGMSKKLGPLQFSTSGGGQVFLG KDMQGEPNYSGQIAYEIDKEVQRIIKEQYERCKQILLEHESQLKLIAKTLLTEETLVAEQ IRSLFYDGVLPTVDYDAAKVVKDEDRDDSEFSNGKYGKSYDDIREEQLEEGRKDEAEDRK EDDRIDHDRNNHRSDRNQSQNHSQRNDRDETGYEQSPNIEHPTDSNHRES >gi|312979625|gb|ACRM01000040.1| GENE 10 9798 - 10337 749 179 aa, chain - ## HITS:1 COG:SA0468 KEGG:ns NR:ns ## COG: SA0468 COG0634 # Protein_GI_number: 15926187 # Func_class: F Nucleotide transport and metabolism # Function: Hypoxanthine-guanine phosphoribosyltransferase # Organism: Staphylococcus aureus N315 # 1 178 1 178 179 297 87.0 8e-81 MKDDLKDILLTEEEIQEICKHLGEQLTRDYKDKPLVCVGILKGSVMFMADLIKRIDTHLA IDFMDVSSYHGGTESTGEVQILKDLSASIENKDVLIIEDILETGTTLKSITELLRSRKVN SLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYAEHYRNLPYIGTLKPEIYNK >gi|312979625|gb|ACRM01000040.1| GENE 11 10338 - 11639 804 433 aa, chain - ## HITS:1 COG:SA0467 KEGG:ns NR:ns ## COG: SA0467 COG0037 # Protein_GI_number: 15926186 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Predicted ATPase of the PP-loop superfamily implicated in cell cycle control # Organism: Staphylococcus aureus N315 # 1 432 1 431 431 415 51.0 1e-116 MKMKTSLWKKTDHLAVAVSTGIDSMCLLYKLLNDLSHSYQSITCLHVNHGLRDASVEEER FIKQFCKQYQIPCYVKQLDLSETVEKGKSIQSEARDLRYQWFDEMMSKINADVLLTAHHL NDQLETIFYRVFTGRSTRNSLGMHECTERNHYFICRPLIETYKNDIKQYQTIHHVPFYED ESNHHNKYARNDIRNRLLPAIDENKDFKVEQLLKLKHWHDMQLQLTQRRISCFIEQHVNI HLNEERIQLSRASFNQLDEISKMILLDRLFEMLQLNKSFSEKNYNEWFEQIESKQSQIKI PLTEKWIIQIAYDKFIIMAHYEHSLLEEQIVTHPYTYQFGHYLITIHPNENDEAIDWPLT IRTRRDGDKFKLNGSHGHKKVSRLLIDKKIDSIERTQIPIILDAKQRVIAIGQLYVTTSF KHIIDIKKIGDDS >gi|312979625|gb|ACRM01000040.1| GENE 12 11847 - 12248 359 133 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|218290661|ref|ZP_03494752.1| RNA binding S1 domain protein [Alicyclobacillus acidocaldarius LAA1] # 1 133 1 133 134 142 52 2e-33 MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEDHLSVGDEVEVKV LSIAEDGKISLSIKKAKDRPRRPHHKSNQNKPPQQKAEDFEKKLSNFLKDSEDKLTSIKR QTESRRGGKGSRR >gi|312979625|gb|ACRM01000040.1| GENE 13 12383 - 12778 501 131 aa, chain - ## HITS:1 COG:SA0465 KEGG:ns NR:ns ## COG: SA0465 COG2919 # Protein_GI_number: 15926184 # Func_class: D Cell cycle control, cell division, chromosome partitioning # Function: Septum formation initiator # Organism: Staphylococcus aureus N315 # 1 117 1 117 130 124 72.0 3e-29 MSKKVEHIDNQYTSERNRKKQRQQKRMRVVRRRVTVFGGLLLAIIIILSIMLVFQKQSNN QATIERKQKEEQFQKKQDEEIALKEELNNLNDKDYIEKVARDDYYLSNNGEIIFKLPNDK SSSNSKSSSNN >gi|312979625|gb|ACRM01000040.1| GENE 14 12814 - 13095 473 93 aa, chain - ## HITS:1 COG:SA0464 KEGG:ns NR:ns ## COG: SA0464 COG1188 # Protein_GI_number: 15926183 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) # Organism: Staphylococcus aureus N315 # 1 76 1 76 87 110 85.0 5e-25 MRLDKYLKVSRLVKRRTLAKEISDQGRVTINGNVAKAGTDVKVEDELVIRFGQKSVTVKV TGLSEHASKENAKNMYELIKEERVQPSAQSEEV >gi|312979625|gb|ACRM01000040.1| GENE 15 13092 - 14282 1521 396 aa, chain - ## HITS:1 COG:SA0463 KEGG:ns NR:ns ## COG: SA0463 COG3956 # Protein_GI_number: 15926182 # Func_class: R General function prediction only # Function: Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain # Organism: Staphylococcus aureus N315 # 1 395 1 396 397 540 70.0 1e-153 MTHTLTIVGIGNHSMDDLPLGVYRFLKQQQSVYARTLEHPVIKDLKSDIEFKSFDDVYEK YDQFEAVYQHIVETLIEETRIQDTVYVVPGHPRVAETTTAKLLDYNKNNDDIHVKILGGK SFIDDIFVAIDEDPNDGFTLLDGTILKENTLNIRTHTLITQVYSAMIAADVKLTLMERYP DDFKVKIVTGANSQGAKVLEVPLFELDHNEDMFNNLTSVFVPKITRDEDMYTDFDFAVYI IDHLVDDEKGCPWDRVQTHESLKRYLLEETFELFEAIDNEDDWHMIEELGDILLQVLLHA SIGKKEGYMDIKEVIESLNAKMIRRHPHIFGDKTVETIEDLIDVWKDAKAKEGKIPRVKF EKVFADHFMTLYDKTKNKDFNEETLKNYLQQGENDK >gi|312979625|gb|ACRM01000040.1| GENE 16 14285 - 15859 1414 524 aa, chain - ## HITS:1 COG:SA0462 KEGG:ns NR:ns ## COG: SA0462 COG2244 # Protein_GI_number: 15926181 # Func_class: R General function prediction only # Function: Membrane protein involved in the export of O-antigen and teichoic acid # Organism: Staphylococcus aureus N315 # 19 524 2 507 508 494 57.0 1e-139 MSTNYKSSSEVSSSSKNSRQHSAFNGVVILTLALVIVKVLSAIYRVPYQNILGDSGLYAY QQIYPIVALGMILSMNAIPSAVTQVFGSHSRTEVFSKTLLRFQMIGLIIFSVILVLSHPL ALLMGDAHLAPMLKMASLSYLFIGILGVIRGFYQSRQQMNIPAISQVIEQCIRVCVIIIA ILMFMFKEWTIYQAGALAILASALGFLGSSLYLLATRPFRLQLNQHSYPIPWKQLILATL VFALSQLLVILWQFIDSFTVVHMLQTYGLGFREAIMQKGIYDRGASFIQIGLIVTTTFSF VLIPLLTDAMSDHNHVLMNRYTNASLKITLLISVAAGIGLINILPMMNHVFFKTDQLSFT LSIYTLTVIGVSLIMMDIALLQVMNQIRPIFIGVMSGLLFKIIFNVIFIYFMGILGASIS TVLSLIIFVTILHYEVVKYYRFNRMRAFIVKLMSALIIMSVVIQGLRMLLPPVGRLGSLI ELLIIVGIGGLIFLLLVMYMNILGYKELKHLPFGDKLYRIKKGR >gi|312979625|gb|ACRM01000040.1| GENE 17 15843 - 19352 4484 1169 aa, chain - ## HITS:1 COG:SA0461 KEGG:ns NR:ns ## COG: SA0461 COG1197 # Protein_GI_number: 15926180 # Func_class: L Replication, recombination and repair; K Transcription # Function: Transcription-repair coupling factor (superfamily II helicase) # Organism: Staphylococcus aureus N315 # 3 1168 2 1167 1168 1869 84.0 0 MRTIISDYIQNDKRFQELDEVFGNQNILVTGLSPSAKATIIAEKYLNNDKQMLLITNNLY QADKLETDILQYIDHSEVYKYPVQDIMTEEFSTQSPQLMSERVRTLTALSHDKKGLFIVP LNGLKKWLTPVELWKHHQMTLEVGDDIDVDEFLNKLVNMGYRRESVVSHIGEFSLRGGII DIYPLIGQPVRIELFDTEVDSIRDFDVETQRSNDNVEKVDITTASDYIITEDVINHLQTE LQKAYEQTRPKIDKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMYDTPSTLIDYFQK DAIVVVDEYNRIKETEKTLTTEVDDFIQNLIESGNGFIGQSFMEYDGFETLINHYPVTYF TLFTSSMPVKLQHIIKFSCKPVQQFYGQYDIMRSEFQRYVSNNYTIVVLVETETKVERIQ SMLNEMHIPTVINIHSEIESGQAIVTEGSLSEGFELPYMQLVVITERELFKTKQKKQRKR TKTISNAEKIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGDVHRDYIKLQYKGTDQLFV PVDQMDQVQKYVASEDKSPKLNKLGGSEWKKTKAKVQQSVEDIADELIALYKEREMSVGY QYGEDTAEQHDFEMDFPYELTPDQAKSIEEIKEDMEKERPMDRLLCGDVGYGKTEVAVRA AFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFRTAKEVRETKEGLKS GYVDIIVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKTNVDVLTLTATPIPR TLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNSNFIKEALERELSRDGQVFYLYNKVQS IYEKREQLQMLMPEANIAVAHGQMTERDLEETMLSFINGEYDILVTTTIIETGVDVPNAN TLIIEEADHFGLSQLYQLRGRVGRSSRIGYAYFLHSTNKVLTETAEERLQAIKEFTELGS GFKIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGITEEVPDAPDVEM ELHLDAYLPAEYIQNEQAKIEIYKKLRKVENEEQLFDVKDELLDRFNDYPVEVERLLEMV EIKIHALHAGVTLIKDKGKQIEVFLSTKGTEQINGEELFKQTQPLGRTMKLGVKEGKMHI TLTKSKQWLDNLKFLVKCLEGSMELEYEL >gi|312979625|gb|ACRM01000040.1| GENE 18 19349 - 19921 804 190 aa, chain - ## HITS:1 COG:SA0460 KEGG:ns NR:ns ## COG: SA0460 COG0193 # Protein_GI_number: 15926179 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Peptidyl-tRNA hydrolase # Organism: Staphylococcus aureus N315 # 1 189 1 189 190 334 87.0 7e-92 MKCIVGLGNIGKRFERTRHNIGFEVIDYILDKNQFTLDKQKFKGAYTIERLNGDKVLFIE PMTMMNLSGEAVGPLMDYYNVEVEDLIVLYDDMDLSQGNIRLRQKGSAGGHNGMKSIIKH LGTDQFKRIRIGVGRPTNGMSVPDYVLQKFSNEEMMTMEKVIEHAAQAVEAFIETSRFDH VMNEYNGEVN >gi|312979625|gb|ACRM01000040.1| GENE 19 20228 - 20893 1081 221 aa, chain - ## PROTEIN SUPPORTED ## NR: gi|228476234|ref|ZP_04060937.1| ribosomal protein L25, Ctc-form [Staphylococcus hominis SK119] # 1 221 1 218 218 421 98 1e-117 MASLKSIIRQGKQTRSDLKKLRNTGKVPAVVYGYGTKNTSVKVDEVEFIKVIREVGRNGV IDLGVGSKTIKVMVSDYQFDPLKNQITHIDFLAINMTEERTVDVPVQLVGEAVGAKEGGV VEQPLFDLQITATPENIPESIEVDITDLQINDSYSVGDIKVSGDFTIENDPEESVVTVVP PTDEPSEEEIEAMEGESATEEPEVAGEDKEDKEDEENKDEE >gi|312979625|gb|ACRM01000040.1| GENE 20 21066 - 22031 1259 321 aa, chain - ## HITS:1 COG:SA0458 KEGG:ns NR:ns ## COG: SA0458 COG0462 # Protein_GI_number: 15926177 # Func_class: F Nucleotide transport and metabolism; E Amino acid transport and metabolism # Function: Phosphoribosylpyrophosphate synthetase # Organism: Staphylococcus aureus N315 # 1 321 1 321 321 575 94.0 1e-164 MLNNEYKNSSLKIFSLKGNEPLAQEVADRVGIELGKCSVKRFSDGEIQINIEESIRGCDV FIIQPTSYPVNLHLMELLIMIDACKRASAANINIVVPYYGYARQDRKARSREPITAKLVA NLIETAGANRMIALDLHAPQIQGFFDIPIDHLMGVPIIGQYFENDPNINPEECVVVSPDH GGVTRARKLADILKTPIAIIDKRRPKPNVAEVMNIVGEIEGRTAIIIDDIIDTAGTITLA AQALKDKGAKDVYACCTHPVLSGPAKERIENSAIKELIVTNSILLDDSQKPSNIKELSVA GLIAQAIVRVYERESVSVLFD >gi|312979625|gb|ACRM01000040.1| GENE 21 22242 - 23597 1715 451 aa, chain - ## HITS:1 COG:SA0457 KEGG:ns NR:ns ## COG: SA0457 COG1207 # Protein_GI_number: 15926176 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) # Organism: Staphylococcus aureus N315 # 1 450 1 450 450 664 76.0 0 MQRNAIILAAGKGTRMKSKKYKVLHEVAGKPMVEHVLTNVKKAGVNQIVTIVGHGAEQVK DTLGNQSLYSYQNEQLGTAHAVKMAEEHLHTQEGTTLVVCGDTPLITSETLQRLIAHHEE TQAQVTVLSATAQTPFGYGRIVRDQNHHLNRIVEEKDATNAQKDINEISSGIFAFDNKTL FEKLKQVKNDNAQGEYYLPDVVTLILEDNGKAEVYHTDDFDEIMGVNDRIMLSHAEKALQ HRINHHHMRNGVTIIDPNTTFIGSDVEIGMDTVIEPGVRINGKTFIGEDTHVGQYSEINN SRIGNKVNIIQSVINDSSVGNKTKVGPFAQLRPGSNLGTEVKVGNFVEVKKAELKDGAKV SHLSYIGDAEVGERTNIGCGSITVNYDGVNKFKTVIGKDAFIGCNTNLIAPVTVGDGALI AAGSTITDDIPKESLALARARQVTKEGYNKK >gi|312979625|gb|ACRM01000040.1| GENE 22 23860 - 24171 410 103 aa, chain - ## HITS:1 COG:SA0456 KEGG:ns NR:ns ## COG: SA0456 COG2088 # Protein_GI_number: 15926175 # Func_class: M Cell wall/membrane/envelope biogenesis # Function: Uncharacterized protein, involved in the regulation of septum location # Organism: Staphylococcus aureus N315 # 1 100 9 108 108 167 93.0 3e-42 MKVTDVRLRKIQTDGRMKALVSITLDEAFVIHDLRVIEGNSGLFVAMPSKRTPDGEFRDI AHPINSEMRQEIQDAVMKVYDETDEVIPDKNASSDVTEESDEA >gi|312979625|gb|ACRM01000040.1| GENE 23 24240 - 24620 519 126 aa, chain - ## HITS:1 COG:SA0455 KEGG:ns NR:ns ## COG: SA0455 COG0251 # Protein_GI_number: 15926174 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Putative translation initiation inhibitor, yjgF family # Organism: Staphylococcus aureus N315 # 1 124 1 124 126 190 79.0 6e-49 MKTINTNKAPEALGPYSHAMVVNNLVFTSGQIPLDTEGNIVSSDVKEQTKQVLENLSVVL EEAGSDLNSVVKATIFISDMNEFQQINEVYGSYFNEHQPARSCVEVSRLPKDVKVEIELV GKVKGI >gi|312979625|gb|ACRM01000040.1| GENE 24 24636 - 25460 675 274 aa, chain - ## HITS:1 COG:SA0454 KEGG:ns NR:ns ## COG: SA0454 COG0503 # Protein_GI_number: 15926173 # Func_class: F Nucleotide transport and metabolism # Function: Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins # Organism: Staphylococcus aureus N315 # 1 274 1 274 274 464 95.0 1e-130 MRYKRSERIVFMTQYLMNHPNQLIPLTFFVKKFKQAKSSISEDVQIIKNTFQKEKLGTVI TTAGASGGVTYKPMMSKEEAIEIIEEIITMLQEKERLLPGGYLFLSDLVGNPSLLNKVGK LIASIYMDEKLDAVVTIATKGISLANAVANVLNLPVVVIRKDNKVTEGSTVSINYVSGSS RKIETMVLSKRTLAENSNVLVVDDFMRAGGSINGVMNLMNEFKAEVKGVSVLVESKEVKQ RLIEDYTSLVKLSDVDEYNQEFKVEPGNILSKFS >gi|312979625|gb|ACRM01000040.1| GENE 25 25475 - 26323 559 282 aa, chain - ## HITS:1 COG:SA0453 KEGG:ns NR:ns ## COG: SA0453 COG1947 # Protein_GI_number: 15926172 # Func_class: I Lipid transport and metabolism # Function: 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase # Organism: Staphylococcus aureus N315 # 1 282 1 282 282 466 78.0 1e-131 MIYETAPAKINLTLDTLFKRNDGYHEIAMIMTTVDLNDRLSFQKRNDNKIVVDIEHNYVT NDHKNLAYQAAKLMMETYQLKQGVTISIDKDIPVSAGLAGGSADAAATMRGINRLYELDA SLETLSQLGLQIGTDVPFCIYNKTAICEGRGEKIKFLDKPPSAWVVLAKPNLGISSPDIF KELNLKDDYDVHTEMCEEAIRQGDYMKLCKSLSNRLETVSMSMYPEIKKIKNNMLRCGAD GALMSGSGPTVYAFAQKESQAKKVYNAVNGCCNEVYLVRLLG >gi|312979625|gb|ACRM01000040.1| GENE 26 26600 - 26863 211 87 aa, chain - ## HITS:1 COG:SA0452 KEGG:ns NR:ns ## COG: SA0452 COG4466 # Protein_GI_number: 15926171 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 87 1 87 87 155 91.0 2e-38 MPKSILDIKNSIDCHLGNRIVLKANGGRKKTIERCGVLKETYPSVFIVELDQDKHNFERV SYTYTDVLTENVQVSFEEDNHQEVVAH >gi|312979625|gb|ACRM01000040.1| GENE 27 26963 - 27853 1032 296 aa, chain - ## HITS:1 COG:SA0451 KEGG:ns NR:ns ## COG: SA0451 COG0030 # Protein_GI_number: 15926170 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Dimethyladenosine transferase (rRNA methylation) # Organism: Staphylococcus aureus N315 # 1 296 2 297 297 473 82.0 1e-133 MDRKDIATPSRTKELLNQFDFNFKKSLGQNFLVDVNIIHKIIDASHIDKSTGIIEVGPGM GSLTEQLAKSAKKVLSFEIDQRLIPVLKETLHPYDNVTIINEDILKADIATAVNMYLNDC DKIMVVANLPYYITTPILLNLMQQDIPIDGYVVMMQKEVGERLNAEVGTKAYGSLSIVTQ YYTETSKVLTVPKSVFMPPPNVDSIVVKLMQREKPLVSVDDEQAFFKLAKAAFAQRRKTI NNNYQNFFKDGKKYKSQIHQWLENANIDPKRRGETLSIQDFARLYEEKKNFPELEN >gi|312979625|gb|ACRM01000040.1| GENE 28 27856 - 28410 633 184 aa, chain - ## HITS:1 COG:SA0450 KEGG:ns NR:ns ## COG: SA0450 COG1658 # Protein_GI_number: 15926169 # Func_class: L Replication, recombination and repair # Function: Small primase-like proteins (Toprim domain) # Organism: Staphylococcus aureus N315 # 3 177 1 175 178 264 82.0 8e-71 MNMRINEFIVVEGRDDTERVKTAVECDTIETNGSAINRETLAVIQNAQETRGVIVLTDPD FPGDRIRNIITEHVPGVKHAYVDREKAKNKRGKIGIEHTHPDDIKTALMHVSSPFEEGEE SIDKSVLIDLGLIIGKDARRKREILGRKLHIGHSNGKQLLKKLNAFGYTEEDVRRGLSMD KENK >gi|312979625|gb|ACRM01000040.1| GENE 29 28555 - 29325 1063 256 aa, chain - ## HITS:1 COG:SA0449 KEGG:ns NR:ns ## COG: SA0449 COG0084 # Protein_GI_number: 15926168 # Func_class: L Replication, recombination and repair # Function: Mg-dependent DNase # Organism: Staphylococcus aureus N315 # 1 256 1 256 257 473 88.0 1e-133 MLIDTHVHLNDEQYDEDLSEVISRAREAGVDRMFVVGFDTKTIERTMELIDEYDFIYGII GWHPVDAIDFTEERLEWIESLAQHPKIIGIGEMGLDYHWDKSPADVQKEVFRKQIALAKR VKLPIVIHNREATQDCVDILMEEHAEEVGGIMHSFSASPEIADVVINKLNFYVSLGGPVT FKNAKQPKEVAKHVPMDRLLVETDAPYLSPHPYRGKRNEPERVTLVAQQIADLRDMTYEE VCRQTTENAERLFNLN >gi|312979625|gb|ACRM01000040.1| GENE 30 29349 - 31325 2358 658 aa, chain - ## HITS:1 COG:SA0448_1 KEGG:ns NR:ns ## COG: SA0448_1 COG0143 # Protein_GI_number: 15926167 # Func_class: J Translation, ribosomal structure and biogenesis # Function: Methionyl-tRNA synthetase # Organism: Staphylococcus aureus N315 # 1 553 1 552 552 1023 90.0 0 MAKETFYITTPIYYPSGNLHIGHAYSTVAGDVIARYKRMQGYDVRYLTGTDEHGQKIQEK AQKAGKTELEYLDEMIAGIKRLWAKLEISNDDFIRTTEERHKQVVEKVFERLLKQGDIYL GEYEGWYSVPDETYYTESQLVDPVYENGKIAGGKSPDSGHEVELVKEESYFFNINKYTDR LLEFYDANPDFIQPPSRKNEMINNFIKPGLEDLAVSRTSFDWGVRVPSNPKHVVYVWIDA LVNYISSLGYLSDDDSLFQKYWPADVHLMAKEIVRFHSIIWPILLMALDLPLPKKVFAHG WILMKDGKMSKSKGNVVDPNVLIDRYGLDATRYYLMRELPFGSDGVFTPEAFVERTNFDL ANDLGNLVNRTISMINKYFQGELPAYQGPKHELDEDMEALALETVKNFHDNMESFQFSVA LSTVWKLISRTNKYIDETTPWVLAKDESQKDMLGNVMAHLVENIRFATVLLRPFLTHAPK EIFKQLNINNSDLYELSSLEHYGALQEPIMVTEKPSPIFPRLDSEDEIAFIKESMQPPKS SEDDKEEVPSKSQIDIKDFDKVEIKAATVIDAENVPKSDKLLKIQVDLGAEQRQIVSGIA KFYRSEDIIGKKVAVVTNLKPAKLMGHKSEGMILSAEKDKVLTLVSLPSAIPNGAIIK >gi|312979625|gb|ACRM01000040.1| GENE 31 31551 - 32393 1003 280 aa, chain - ## HITS:1 COG:SA0447 KEGG:ns NR:ns ## COG: SA0447 COG0313 # Protein_GI_number: 15926166 # Func_class: R General function prediction only # Function: Predicted methyltransferases # Organism: Staphylococcus aureus N315 # 1 278 1 278 279 388 69.0 1e-108 MATLYLVGTPIGNLGDITFRAIETLKQVDIIACEDTRVTKKLCNHYDITTLLKSYHEHNK EQQTDYLIQLLKEENNIALVSDAGLPLISDPGYELVVEAHKHNIAVETIPGPNAGLTALM ASGLPSFTYTFLGFLPRKEKEKVNILSQRMYQDSTLIIYESPFRVIDTLKAIIKVDSKRR VAVGRELTKKFEQIVMLEVSQLLEAIENQEIPQKGEFVILIEGAKAQETKQWFEDVTIID HVNHYIETQNLKPKKAIKVVAEERQMKTSEIYDIYHNIKS >gi|312979625|gb|ACRM01000040.1| GENE 32 32395 - 32643 192 82 aa, chain - ## HITS:1 COG:SA0446 KEGG:ns NR:ns ## COG: SA0446 COG2827 # Protein_GI_number: 15926165 # Func_class: L Replication, recombination and repair # Function: Predicted endonuclease containing a URI domain # Organism: Staphylococcus aureus N315 # 1 81 1 81 82 108 74.0 2e-24 MGNHFVYIVRCSDNSLYTGYTNNIEVRINKHNAGKGAKYTKTRRPVVLVYQEMYETKSEA LRREYEIKTFTRQRKLKLIEEG >gi|312979625|gb|ACRM01000040.1| GENE 33 32636 - 33361 677 241 aa, chain - ## HITS:1 COG:SA0445 KEGG:ns NR:ns ## COG: SA0445 COG4123 # Protein_GI_number: 15926164 # Func_class: R General function prediction only # Function: Predicted O-methyltransferase # Organism: Staphylococcus aureus N315 # 1 241 1 241 241 368 74.0 1e-102 MLKEQERLDDLIKENLKIIQNDEVFSFSTDALLLAHFTKVRKNDSILDLCAGNGVIALLL AAKSHQKIESIEIQEQLADMAQRSFKYNQLEERLSMHNMDLKDVYQTFKPSQFTLITCNP PYFKQNQLHQHQKEAHKIARHEIMCSLEDCMFAARHLLKQGGRLVMVHRAERLMDVLTEM RQANIEPKRIVFIYSKHGKSAVTIVVEGRKNGNQGLDIAPPFYIYNENGEYSEQMKEVYY G >gi|312979625|gb|ACRM01000040.1| GENE 34 33483 - 33875 469 130 aa, chain - ## HITS:1 COG:SA0444 KEGG:ns NR:ns ## COG: SA0444 COG4467 # Protein_GI_number: 15926163 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 129 8 121 122 124 55.0 4e-29 MNRNDLFEKIVKLESNVNVLTQEMTELKSLAIQLIEENVTLQVENDNLKALMAKSEQDVE STKANSESPHNKKSNENDFKSAIKNVKKPLPSKDNLAVLYSEGFHICNGELFGKHRYGED CLLCMNVLNS >gi|312979625|gb|ACRM01000040.1| GENE 35 33892 - 34695 908 267 aa, chain - ## HITS:1 COG:SA0443 KEGG:ns NR:ns ## COG: SA0443 COG1774 # Protein_GI_number: 15926162 # Func_class: S Function unknown # Function: Uncharacterized homolog of PSP1 # Organism: Staphylococcus aureus N315 # 58 267 2 211 211 353 82.0 2e-97 MPNVVGVQFQKAGKLEYYAPNDLKLDSEDWVVVESKRGIEIGIVKLTSKCVNDEDVTLPL KDILRIATEEDIQQYKQNEKDAEQALILCKQLVKDQDLDMRLVNCEYTLDKSKVIFNFTA DDRIDFRKLVKVLAQNLRTRIELRQIGVRDEAKLLGGIGPCGRSLCCSTFLGDFQPVSIK MAKDQNLSLNPTKISGACGRLMCCLKYENDYYEEARAQLPDVGDEIHTPEGTGKVVGLNI LDISMQVKIDGLEQPLEYKMEELSTFN >gi|312979625|gb|ACRM01000040.1| GENE 36 34696 - 35622 946 308 aa, chain - ## HITS:1 COG:SA0442 KEGG:ns NR:ns ## COG: SA0442 COG0470 # Protein_GI_number: 15926161 # Func_class: L Replication, recombination and repair # Function: ATPase involved in DNA replication # Organism: Staphylococcus aureus N315 # 1 308 1 308 308 411 69.0 1e-115 MEELQKLANAFHSNKLSHAYLFEGDDAQSMKHVAMEFAQLILCNGNEQCELKLRNFNHPD FTYISSEESTIKKEQIEQLVRQMNQLPIEGTYKVYIIEDFEKLTVQGENSILKFLEEPPE NTIAILISTKPEQILNTIHSRCQHMYFKPSDTSHFIDKLVDNGINRAIAEMLSSYTTQIE VAKDLNEEYDLIELRKVIVHWCELLLTNKPMALISVIDVLKNAKNRKLQLLTLSVINAFF EDMMHAKVGIEDNFIFTDLKPLIKEYTTRLTLNQMILMYDQIIEAHKKLIQNVNPMLVFE QIVIKGVS >gi|312979625|gb|ACRM01000040.1| GENE 37 35798 - 36127 495 109 aa, chain - ## HITS:1 COG:SA0441 KEGG:ns NR:ns ## COG: SA0441 COG3870 # Protein_GI_number: 15926160 # Func_class: S Function unknown # Function: Uncharacterized protein conserved in bacteria # Organism: Staphylococcus aureus N315 # 1 109 1 109 109 199 88.0 8e-52 MKMIIAIVQDQDSQELSDQLVKNNFRATKLATTGGFLRAGNTTFLCGVDDERVDEALTVI DNTCGNRDQLVSPMTPMGGSADSYIPYPVEVEVGGATVFVMPVEKFHRF >gi|312979625|gb|ACRM01000040.1| GENE 38 36155 - 36772 712 205 aa, chain - ## HITS:1 COG:SA0440 KEGG:ns NR:ns ## COG: SA0440 COG0125 # Protein_GI_number: 15926159 # Func_class: F Nucleotide transport and metabolism # Function: Thymidylate kinase # Organism: Staphylococcus aureus N315 # 1 205 1 205 205 290 70.0 2e-78 MAAFITFEGPEGSGKTTVLNQINKLLSENYNVISTREPGGVSTGEEIRNILLDGENIDIR TEALLFAASRREHLVEKVIPALKNDKVVLCDRYIDSSLAYQGYARGIGIEEVKKINEFAI NGLYPDLTIYLDIDAEVGRERILKNQRSQNRLDKETLTFHQKVIEGYKTLIKTNPERFKV VDATQSIESVISDTYEIILSYLKNL >gi|312979625|gb|ACRM01000040.1| GENE 39 36774 - 38111 1144 445 aa, chain - ## HITS:1 COG:SA0439 KEGG:ns NR:ns ## COG: SA0439 COG1982 # Protein_GI_number: 15926158 # Func_class: E Amino acid transport and metabolism # Function: Arginine/lysine/ornithine decarboxylases # Organism: Staphylococcus aureus N315 # 1 445 1 445 445 498 56.0 1e-140 MKLPITQKLDDLIRHHAISLHVPGHKNMTIGYLDALSLKMDMTEITGLDDLHHPEDTILE SMNRVNKHPNYDAYYLVNGTTAGILSVIQAFAHIKGRYLISRNVHKSVFNALDLTQQSAD ILPMYRSDKSYQYLAPLIDTKMLRHQKLAVVTYPNYYGECFDINQCVKQFHDYNIPVLID EAHGAHFNLKHFPKSALESEADYVVQSYHKTLPTLTMGSVLFIHKNAPLKDEVIKYLGIF QTSSPSYLVMSSIELAHQFYNSYDSSLFFEKRKQFIETLRQQHFEVIEVEDPLKLIVRAN GHTGVEVQRYFEKNHIYIELADDYQILIVLPLWHFNDRYPFETLLHRIKTIQLPKKAKEK LEPVLLPLEKSVYVSKYINHAYWININKAQDKVLAQHIVPYPPGIPVFWKGEKVTKNMIK LMQYYLSHSVRVEGIKNDKILVKDE Prediction of potential genes in microbial genomes Time: Sun May 29 09:46:23 2011 Seq name: gi|312979624|gb|ACRM01000041.1| Staphylococcus hominis subsp. hominis C80 cont1.41, whole genome shotgun sequence Length of sequence - 617 bp Number of predicted genes - 0 Number of transcription units - 0, operones - 0 average op.length - 0 N Tu/Op Conserved S Start End Score pairs(N/Pv) - 5S_RRNA 218 - 280 95.0 # AE015927 [R:2797299..2798807] # 5S ribosomal RNA # Clostridium tetani E88 # Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium. - 5S_RRNA 504 - 617 99.0 # AE015929 [R:1594449..1594563] # 5S ribosomal RNA # Staphylococcus epidermidis ATCC 12228 # Bacteria; Firmicutes; Bacillales; Staphylococcus.