Statistically Significant Motifs of 3,032 known Plant Transcription Factor Binding Sites and their Consensuses found in the 576 plant proximal promoter sequences [-200:+51] (+1 is experimentally verified TSS) Program Nsite | Version 6.2014 Search for motifs of 3032 Transcription Factor Binding Sites (TFBS) SET of TFBSs: REGSITE DB: 3032 Plant Transcription Factor Binding Sites [Last update: 13.07.2016]; Softberry Inc. Search PARAMETERS: Expected Mean Number : 0.0100000 Statistical Significance Level : 0.9500000 Level of homology between known TFBS and motif: 80% Variation of Distance between TFBS Blocks : 20% NOTE: Mism. - Mismatches | Mean. Exp. Number - Mean Expected Number | Up.Conf.Int. - Upper Confidence Interval Mismatches are given in Lower case Nsite Output Format ----------------- (1) Description of the Program's allocation and purpose. (2) Search parameters. (3) Abbreviations used (3) Query name (4) Length and Nucleotide composition of Query sequence (5) List and Description of TFBS motifs predicted (6) Total Statistics of Search Results List of predicted TFBS motifs is displayed in the following format: Line 1: Description of TFBS from Regsite DB (http://www.softberry.com/berry.phtml?topic=regsite), including: - TFBS AC: TFBS Accession Number in Regsite DB; - OS: TFBS source organism name; - GENE: TFBS source gene name - TFBS: name of TFBS - BF: transcription factor binding this element If TFBS was identified by analysing synthetic oligonucleotides, instead of a concrete gene name "Synthetic oligonucleotides" is given. "BF: unknown nuclear factor" means that transcription factor binding this element was not yet characterised. Line 2: DNA strand containing this TFBS motif (+ or -) and the search statistical characteristics, as Mean Expected Number, Upper boundary of the confidence interval (Up.Conf.Int.) and number motifs of this TFBS Line 3 and further: Start position of a motif; Sequence of a motif; End position of a motif; number of mismatches between TFBS and motif Description of the example output fragment given below: >Gene:GLYMA01G00300 |Search region [-1000:+101], +1 is annotated gene start| Chr1:complement(90230..96102) | mRNA/CDS:96102/94401 | 5-UTR_longest=1701 Length of Query Sequence: 1101 bp | Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.24 C - 0.21 TFBS AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/TFBS: MSA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 136 AGACCGTTG 144 (Mism.= 0) .................................................................................................. TFBS AC: RSP02872//OS: Artemisia annua /GENE: DBR2/TFBS: WRKY BS1 /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00950 Up.Conf.Int. 1 Found 1 306 GGTGACAA 299 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ==>In Query sequence of length 1101 bp, 7 motif of 7 different TFBSs were found: Motif of TFBS RSP00249 (MSA) on + strand which is located at positions 136-144 (no mismatch; Mean expected number is 0.00218) .................................................................................................. Motif of TFBS RSP02872 (WRKY BS1) on - strand which is located at positions 306-299 (no mismatch; Mean expected number is 0.00950) ____________________________________________________________________________ >PLPR0001..AC:AB001920..OS:Oryza sativa..GENE:phospholipase D..PROD:phospholipase D..[ -200: +51]..CDS:+355..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.25 T - 0.20 C - 0.34 TFBS AC: RSP00022//OS: pea, Pisum sativum /GENE: petE/TFBS: A/T-rich BOX1 /BF: PCF1 Motifs on "-" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 228 ATtATAAAA 220 (Mism.= 1) TFBS AC: RSP00428//OS: pea, Pisum sativum /GENE: Synthetic oligonucleotides/TFBS: Myb1 /BF: Myb26; Myb-like DNA binding protein Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 72 tAAAAACGGgTA 61 (Mism.= 2) TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 27 GCgACGTCGCGt 16 (Mism.= 2) TFBS AC: RSP00836//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 108 CACGGATC 101 (Mism.= 0) TFBS AC: RSP00852//OS: maize (Zea mays) /GENE: H4C7/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 108 CACGGATC 101 (Mism.= 0) TFBS AC: RSP01252//OS: carrot (Daucus carota) /GENE: Synthetic oligonucleotides/TFBS: DcE2F BS /BF: DcE2F Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 209 TTcTCCCGCaaTTTT 223 (Mism.= 3) TFBS AC: RSP01507//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 101 GATCCGTG 108 (Mism.= 0) TFBS AC: RSP01508//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 101 GATCCGTG 108 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 149 TgCGTGcACGTC 138 (Mism.= 2) TFBS AC: RSP01723//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: C/G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00271 Up.Conf.Int. 1 Found 1 146 GTgCACGTCgTT 135 (Mism.= 2) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 145 TGCACGTCGt 136 (Mism.= 1) TFBS AC: RSP02794//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P8 /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 75 GgTTAAAAAC 66 (Mism.= 1) TFBS AC: RSP02847//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 2 /BF: JRE-4 Motifs on "+" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 149 ACGCACACaG 158 (Mism.= 1) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0002..AC:AB004648..OS:Oryza sativa..GENE:RepA..PROD:cysteine endopeptidase..[ -200: +51]..CDS:+246..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.14 T - 0.30 C - 0.35 TFBS AC: RSP00166//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fb /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 129 TTTGCCGC 136 (Mism.= 0) TFBS AC: RSP00320//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: Box I /BF: RNFG1 Motifs on "+" Strand: Mean Exp. Number 0.00186 Up.Conf.Int. 1 Found 1 90 GcTCATCGATC 100 (Mism.= 1) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 1 226 CACCgACTTt 217 (Mism.= 2) TFBS AC: RSP00734//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: CDA-1 BS /BF: DET1; CDA-1 Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 132 CAAAACGC 125 (Mism.= 0) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 18 AAAAGTTtGTTt 29 (Mism.= 2) TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 53 TCTCCCGCC 61 (Mism.= 0) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 31 AGAAACAA 24 (Mism.= 0) TFBS AC: RSP01135//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: I-box-like sequence /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 162 AGATATGATAAGA 150 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00499 Up.Conf.Int. 1 Found 1 167 CTaTATATAT 176 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 178 CgaTATATAT 169 (Mism.= 2) TFBS AC: RSP01445//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-2 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 227 tgCTATAGCTACcAT 241 (Mism.= 3) TFBS AC: RSP02142//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE2 /BF: DREB2C Motifs on "+" Strand: Mean Exp. Number 0.00765 Up.Conf.Int. 1 Found 1 217 AAaGTCGGTg 226 (Mism.= 2) TFBS AC: RSP02520//OS: rice (Oryza sativa, japonica) /GENE: OsChia4a/TFBS: E2-box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 82 CTcCACATGCTc 93 (Mism.= 2) TFBS AC: RSP02674//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: ABRE /BF: Unknown ABRE binding factor Motifs on "+" Strand: Mean Exp. Number 0.00073 Up.Conf.Int. 1 Found 1 213 GAATAaAgtCGGTGT 227 (Mism.= 3) TFBS AC: RSP02914//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS1 /BF: IpMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 232 TAGCTACCAT 241 (Mism.= 0) TFBS AC: RSP02951//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/2 /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 35 TTCCCGCCA 43 (Mism.= 0) Totally 16 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0003..AC:AB013815..OS:Arabidopsis thaliana..GENE:DREB1A..PROD:DREB1A..[ -200: +51]..CDS:+140..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.30 C - 0.23 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00900 Up.Conf.Int. 1 Found 1 28 ACACaTGGC 36 (Mism.= 1) TFBS AC: RSP00043//OS: rice (Oryza sativa) (Oryza sativa) /GENE: rab16A-D/TFBS: Motif I core /BF: TAF-1,transacting factor Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 97 TACGTGGC 104 (Mism.= 0) TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 26 GGACaCaTGGC 36 (Mism.= 2) TFBS AC: RSP00051//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: A3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 104 GCCACGTAaA 95 (Mism.= 1) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 44 TAAGAtCtGCC 34 (Mism.= 2) TFBS AC: RSP00208//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,A /BF: MAT2 (ROM2) Motifs on "-" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 104 GCCACGTaAaCT 93 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 26 gGACACaTGGCA 37 (Mism.= 2) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 104 GCCACGTAAa 95 (Mism.= 1) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 248 TTCTCTCTCtT 238 (Mism.= 1) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 104 GCCACGTAAa 95 (Mism.= 1) TFBS AC: RSP00857//OS: maize (Zea mays) /GENE: H4C7/TFBS: NON /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00972 Up.Conf.Int. 1 Found 1 219 CCAcCTGAAC 228 (Mism.= 1) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 235 AGAAAGAGA 243 (Mism.= 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 241 AGAGAGAAA 249 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 3 235 AGAAAGAGA 243 (Mism.= 1) 239 AGAGAGAGA 247 (Mism.= 0) 241 AGAGAGAAA 249 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 239 aGAGAGAGA 247 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 37 TGCCAtGTGTCc 26 (Mism.= 2) TFBS AC: RSP00943//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box III /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 66 TCATTTtACAA 76 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 98 ACGTGGC 104 (Mism.= 0) TFBS AC: RSP01106//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rHex /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00066 Up.Conf.Int. 1 Found 1 106 AtGCCACGTaA 96 (Mism.= 2) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 251 AGTTTCtcTCtCTTT 237 (Mism.= 3) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 96 TtACGTGG 103 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 232 aAcAGAaAGAGAGAGAA 248 (Mism.= 3) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 96 TtACGTGG 103 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 97 tACGTGGC 104 (Mism.= 1) TFBS AC: RSP01575//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: ICEr1 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 26 GGACACATGgCAGA 39 (Mism.= 1) TFBS AC: RSP01596//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box III /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 76 TTGTaAAATGA 66 (Mism.= 1) TFBS AC: RSP01739//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY11) BS1 /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 14 TTtTTGACTTAtT 2 (Mism.= 2) TFBS AC: RSP01861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 97 TACGTGGC 104 (Mism.= 0) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00289 Up.Conf.Int. 1 Found 1 36 GCCAtGTGTC 27 (Mism.= 1) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00877 Up.Conf.Int. 1 Found 1 53 TTCACTCATTA 43 (Mism.= 2) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00237 Up.Conf.Int. 1 Found 1 97 TAcGTGGCA 105 (Mism.= 1) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 95 tTtACGTGGC 104 (Mism.= 2) TFBS AC: RSP02012//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 36 GCCATGTGtC 27 (Mism.= 1) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 150 AAAATATCT 158 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00016 Up.Conf.Int. 1 Found 2 250 gTtTCTCTCTCTtTCT 235 (Mism.= 3) 248 tTCTCTCTCTtTCTgT 233 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 190 GGAGTGAGAG 181 (Mism.= 1) TFBS AC: RSP02425//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: SEQ20 /BF: WRKY70 Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 24 gAGAaGACTTTT 13 (Mism.= 2) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 150 AAAATATCT 158 (Mism.= 0) TFBS AC: RSP02656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 150 AAAATATCT 158 (Mism.= 0) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 150 AAAATATCT 158 (Mism.= 0) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 158 AGATATTTT 150 (Mism.= 0) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 158 AGATATTTT 150 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 98 ACGTGGC 104 (Mism.= 0) TFBS AC: RSP02849//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VITL1/TFBS: VP1 /BF: WRKY46 Motifs on "-" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 14 TTTTTGACtTAT 3 (Mism.= 1) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 104 GCCACGTaAaC 94 (Mism.= 2) Totally 48 motifs of 45 different TFBSs have been found ____________________________________________________________ >PLPR0004..AC:AB013817, AB007789..OS:Arabidopsis thaliana..GENE:DREB1C..PROD:DREB1C..[ -200: +51]..CDS:+153..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.24 C - 0.24 TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 100 tCCACGTGGC 109 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 109 GCCACGTGGa 100 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 1 101 CCACGTGGCa 110 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 1 101 CCACGTGGCa 110 (Mism.= 1) TFBS AC: RSP00155//OS: cucumber (Cucumis sativus) /GENE: hpr-A/TFBS: 13 bp CytRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 235 AAGATaGATaGAG 247 (Mism.= 2) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 102 CACGTGGC 109 (Mism.= 0) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 100 TCCACGTgGC 109 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 100 TCCACGTGgC 109 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 109 GCCACGTGGA 100 (Mism.= 0) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 109 GCCAcGTGGA 100 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 101 CCACGTGG 108 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 108 CCACGTGG 101 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 102 CACGTGGC 109 (Mism.= 0) TFBS AC: RSP00749//OS: Catharanthus roseus /GENE: STR/TFBS: BN /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 74 gTTTTGTAATTA 63 (Mism.= 1) TFBS AC: RSP00784//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 8 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 100 TCCACGTGGC 109 (Mism.= 0) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00505 Up.Conf.Int. 1 Found 1 110 TGCCACGTGGAt 99 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00797 Up.Conf.Int. 1 Found 1 100 TCCACGTGgC 109 (Mism.= 1) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00756 Up.Conf.Int. 1 Found 1 97 AGAAACAG 90 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00756 Up.Conf.Int. 1 Found 1 97 AGAAACAG 90 (Mism.= 1) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 2 AGAAACTT 9 (Mism.= 0) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 103 ACGTGGC 109 (Mism.= 0) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 101 CCACGTGG 108 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 108 CCACGTGG 101 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 233 GAaAGAtAGAtAGAGAA 249 (Mism.= 3) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 102 CACGTGGC 109 (Mism.= 0) TFBS AC: RSP01575//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: ICEr1 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 26 GGACACATGTCAGA 39 (Mism.= 0) TFBS AC: RSP01593//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 100 TcCACGTGGCAT 111 (Mism.= 1) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 99 ATCCACGTGgCa 110 (Mism.= 2) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 110 TGCCACGTGGaT 99 (Mism.= 1) TFBS AC: RSP01735//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM6 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00143 Up.Conf.Int. 1 Found 1 37 AGATTCTCA 45 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00695 Up.Conf.Int. 1 Found 1 100 tCCACGTGgC 109 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 109 GCCACGTGga 100 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00141 Up.Conf.Int. 1 Found 1 101 CCACGTGGCa 110 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 108 CCACGTGGat 99 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00953 Up.Conf.Int. 1 Found 1 100 tCCACGTGgC 109 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00695 Up.Conf.Int. 1 Found 1 100 TCCACGTGGC 109 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 109 gCCACGTGGa 100 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 101 CCACGTGG 108 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 108 CCACGTGG 101 (Mism.= 0) TFBS AC: RSP02309//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.8) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00137 Up.Conf.Int. 1 Found 1 27 CCtTTGACCCAT 16 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 101 cCACGTGG 108 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 247 CTCTaTCTaTCTtTCT 232 (Mism.= 3) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "+" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 228 GaAAAGAAAGAt 239 (Mism.= 2) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 192 GGAGTGAGAG 183 (Mism.= 1) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00797 Up.Conf.Int. 1 Found 1 109 GCCACGTGGA 100 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00797 Up.Conf.Int. 1 Found 1 109 GCCACGTGGA 100 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00183 Up.Conf.Int. 1 Found 1 109 GCCACGTGGA 100 (Mism.= 1) TFBS AC: RSP02516//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-2 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 12 gGGAAGTTTCtG 1 (Mism.= 2) TFBS AC: RSP02698//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: I box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 103 tGGATAAGAA 94 (Mism.= 1) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 101 CCACGTGG 108 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 108 CCACGTGG 101 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 103 ACGTGGC 109 (Mism.= 0) TFBS AC: RSP02873//OS: Artemisia annua /GENE: DBR2/TFBS: WRKY BS2 /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 25 TTTGACCC 18 (Mism.= 0) TFBS AC: RSP02949//OS: maize (Zea mays) /GENE: OPT/TFBS: GLK2 BS /BF: GLK2 Motifs on "-" Strand: Mean Exp. Number 0.00404 Up.Conf.Int. 1 Found 1 44 GAGAATCT 37 (Mism.= 0) TFBS AC: RSP02951//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/2 /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 160 TTCCGGCCA 168 (Mism.= 1) TFBS AC: RSP02973//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI1/TFBS: O-box (ABI1) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 159 cTTCCGgCCAAT 170 (Mism.= 2) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "+" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 2 AGAAACTTCC 11 (Mism.= 0) Totally 57 motifs of 49 different TFBSs have been found ____________________________________________________________ >PLPR0005..AC:AF014927..OS:Chlamydomonas reinhardtii..GENE:gpxh..PROD:glutathione peroxidase homolog..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): +3 +5 |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.26 T - 0.27 C - 0.25 TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 53 CaCACCTACC 44 (Mism.= 1) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 53 CaCACCTACC 44 (Mism.= 1) TFBS AC: RSP00433//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB84 BS /BF: AtMYB84 Motifs on "+" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 41 tGTGGTAGGTGt 52 (Mism.= 2) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 173 TAACAGAGaC 164 (Mism.= 1) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 1 TGAAAGAGA 9 (Mism.= 1) TFBS AC: RSP02018//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBa /BF: MYB Motifs on "-" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 51 CACCTACC 44 (Mism.= 0) TFBS AC: RSP02020//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: MYB BS /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 44 GGTAGGTG 51 (Mism.= 0) TFBS AC: RSP02734//OS: Chlamydomonas reinhardtii /GENE: GPXH/GPX5/TFBS: ERE /BF: SOR1 Motifs on "+" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 57 CAACGTTG 64 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 64 CAACGTTG 57 (Mism.= 0) TFBS AC: RSP02735//OS: Chlamydomonas reinhardtii /GENE: GSTS1/TFBS: ERE /BF: SOR1 Motifs on "+" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 57 CAACGTTG 64 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 64 CAACGTTG 57 (Mism.= 0) TFBS AC: RSP02755//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS2 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 51 CACCTACC 44 (Mism.= 0) TFBS AC: RSP02757//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS2 (CCoAOMT1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 51 CACCTACC 44 (Mism.= 0) TFBS AC: RSP02811//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: AC element (EgCCR) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 44 GGTAGGTG 51 (Mism.= 0) TFBS AC: RSP02812//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 1 (EgCAD) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 44 GGTAGGTG 51 (Mism.= 0) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 188 CTCACaTGCT 197 (Mism.= 1) TFBS AC: RSP02944//OS: maize (Zea mays) /GENE: RLK/TFBS: RS2 BS /BF: RS2 Motifs on "-" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 53 CAcACCTACC 44 (Mism.= 1) Totally 17 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0006..AC:AF190297..OS:Arabidopsis thaliana..GENE:TT1..PROD:transparent testa 1..[ -200: +51]..CDS:+42..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.13 T - 0.35 C - 0.15 TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00929 Up.Conf.Int. 1 Found 1 57 CCCACgTAtC 48 (Mism.= 2) TFBS AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: Z element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 75 GCAgATACGT 66 (Mism.= 1) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 57 cCCACGTAtC 48 (Mism.= 2) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 48 GAtACGTGGg 57 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 47 TGAtACGTGGgA 58 (Mism.= 2) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00929 Up.Conf.Int. 1 Found 1 57 CCCACgTAtC 48 (Mism.= 2) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00849 Up.Conf.Int. 1 Found 1 123 AGAGAGcAA 131 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 220 GGAGAGAGA 212 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 58 TcCCACGTaTCA 47 (Mism.= 2) TFBS AC: RSP01135//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: I-box-like sequence /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00995 Up.Conf.Int. 1 Found 1 166 AtATATaATAAAA 154 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 48 GATACGTGGG 57 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 49 AtACGTGG 56 (Mism.= 1) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 49 aTACGTGG 56 (Mism.= 1) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 57 cCCACGTATC 48 (Mism.= 1) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00803 Up.Conf.Int. 1 Found 1 237 aTTCaATGGAGT 248 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00803 Up.Conf.Int. 1 Found 1 237 aTTCaATGGAGT 248 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00803 Up.Conf.Int. 1 Found 1 237 aTTCaATGGAGT 248 (Mism.= 2) TFBS AC: RSP01735//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM6 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 193 AGATTCTCA 201 (Mism.= 0) TFBS AC: RSP01868//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: GARP BS 1 /BF: GARP transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 199 AGAATCTTT 191 (Mism.= 0) TFBS AC: RSP01887//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS1 /BF: VSF-1 Motifs on "-" Strand: Mean Exp. Number 0.00029 Up.Conf.Int. 1 Found 1 247 CTCCaTTGaATGTGG 233 (Mism.= 2) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 1 47 TGAtACGTGGgA 58 (Mism.= 2) TFBS AC: RSP02097//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE3 /BF: tomato HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00391 Up.Conf.Int. 1 Found 1 203 TTTGAGAATCTTT 191 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 48 gAtACGTGGG 57 (Mism.= 2) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 57 CcCACGTATC 48 (Mism.= 1) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00691 Up.Conf.Int. 1 Found 1 73 TGCATGATT 81 (Mism.= 1) TFBS AC: RSP02512//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR2/TFBS: AtSGR2-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 79 TCATGCAG 72 (Mism.= 0) TFBS AC: RSP02949//OS: maize (Zea mays) /GENE: OPT/TFBS: GLK2 BS /BF: GLK2 Motifs on "-" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 200 GAGAATCT 193 (Mism.= 0) Totally 27 motifs of 27 different TFBSs have been found ____________________________________________________________ >PLPR0007..AC:L00670..OS:Arabidopsis thaliana..GENE:TMK1..PROD:protein kinase..[ -200: +51]..CDS:+177..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.33 C - 0.20 TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 157 AATAAaAATAAaAATAAATA 176 (Mism.= 2) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "-" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 175 AtTTATTTTTATT 163 (Mism.= 1) TFBS AC: RSP00357//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00646 Up.Conf.Int. 1 Found 1 46 CAACTCAC 53 (Mism.= 0) TFBS AC: RSP00488//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 55 CTACGTAGtC 64 (Mism.= 1) TFBS AC: RSP00576//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: AT-rich FF1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 137 TtTATtTAATTtTTATcATA 118 (Mism.= 4) TFBS AC: RSP00756//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif B /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 49 CTCACACT 56 (Mism.= 0) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 34 ATGCttCACA 25 (Mism.= 2) TFBS AC: RSP01057//OS: arabidopsis (Arabidopsis thaliana) /GENE: rbcS-1a/TFBS: GT-3a Box III /BF: GT-3a Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 184 tCtGTTACCAA 194 (Mism.= 2) TFBS AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic oligonucleotides/TFBS: ZPT2-2 BS 2 /BF: ZPT2-2 Motifs on "+" Strand: Mean Exp. Number 0.00638 Up.Conf.Int. 1 Found 1 231 CAGT 234 --12-- 247 TGCT 250 (Mism.= 0/ 0) TFBS AC: RSP01602//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 109 TCTCAATC 116 (Mism.= 0) TFBS AC: RSP01686//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE D /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 28 CACACA 23 (Mism.= 0) TFBS AC: RSP02076//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS2 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 244 aGCCAAGG 237 (Mism.= 1) TFBS AC: RSP02179//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp18/IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00985 Up.Conf.Int. 1 Found 1 29 TCACAC 24 (Mism.= 0) TFBS AC: RSP02442//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: MYB BS /BF: MYB2; MYB21; MYV108; MYB112; MYB116 Motifs on "+" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 97 AAAtAaACGTTAT 109 (Mism.= 2) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 210 GTGGGACaGa 219 (Mism.= 2) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0008..AC:U44744..OS:Arabidopsis thaliana..GENE:AKT3..PROD:AKT3..[ -200: +51]..CDS:+17..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.11 T - 0.33 C - 0.26 TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 131 AGAAAGAGA 123 (Mism.= 0) TFBS AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/TFBS: CLE-core /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 33 GTGGTCCT 26 (Mism.= 1) TFBS AC: RSP00953//OS: arabidopsis (Arabidopsis thaliana) /GENE: ATHB6/TFBS: ATHB6 BS /BF: ATHB6 Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 85 CAATTATTA 93 (Mism.= 0) TFBS AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/TFBS: NIT2 BS II /BF: NIT2 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 218 TGAAGCTC 225 (Mism.= 0) TFBS AC: RSP01276//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: Box III /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 46 GTACGTGG 39 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 2 130 GAaAGAGAGAGgGAGAA 114 (Mism.= 2) 126 GAGAGAGgGAGAaAGAg 110 (Mism.= 3) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00637 Up.Conf.Int. 1 Found 1 127 TTTCTTGTTCT 137 (Mism.= 1) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00608 Up.Conf.Int. 1 Found 1 127 TTTCTTGTTCT 137 (Mism.= 0) TFBS AC: RSP02204//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: MYCS (SmPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 127 TTTCTTGTTCT 137 (Mism.= 1) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00509 Up.Conf.Int. 1 Found 1 127 TTTCTTGTTCT 137 (Mism.= 1) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00608 Up.Conf.Int. 1 Found 1 127 TTTCTTGTTCT 137 (Mism.= 0) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 127 TTTCTTGTTCT 137 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 4 110 CTCTtTCTCcCTCTCT 125 (Mism.= 2) 112 CTtTCTCcCTCTCTCT 127 (Mism.= 2) 114 tTCTCcCTCTCTCTtT 129 (Mism.= 3) 116 CTCcCTCTCTCTtTCT 131 (Mism.= 2) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 165 TCTCCTgaAC 156 (Mism.= 2) Totally 18 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0009..AC:X90996..OS:Pisum sativum..GENE:gr..PROD:glutathione reductase (NADPH)..[ -200: +51]..CDS:+151..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.32 C - 0.13 TFBS AC: RSP00303//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIa /BF: PCF1;, PCF2; Motifs on "+" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 219 AGGTaaGCCCGT 230 (Mism.= 2) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 97 TAAATGCA 90 (Mism.= 0) TFBS AC: RSP00940//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II* /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00303 Up.Conf.Int. 1 Found 1 242 TTCTACcGTG 251 (Mism.= 1) TFBS AC: RSP01190//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: C-box /BF: C factor Motifs on "-" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 50 CCCCGGTCAA 41 (Mism.= 2) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 81 CCATTGATTTAC 70 (Mism.= 2) TFBS AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 81 CCATTGATTTAC 70 (Mism.= 2) TFBS AC: RSP01744//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCMPG1 (At3g02840)/TFBS: WRKY11 BS /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 39 AATTGACCGggG 50 (Mism.= 2) TFBS AC: RSP02282//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-50) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 224 AGCCCG 229 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0010..AC:X80051..OS:Phaseolus vulgaris..GENE:ME1..PROD:NADP dependent malic enzyme..[ -200: +51]..CDS:+163..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.33 C - 0.21 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "-" Strand: Mean Exp. Number 0.00653 Up.Conf.Int. 1 Found 1 55 GGACtaGTGGC 45 (Mism.= 2) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 45 GCCACTaGTC 54 (Mism.= 1) TFBS AC: RSP00128//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 98 TGAcAAaAaTGAGTTA 83 (Mism.= 3) TFBS AC: RSP01073//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em2b /BF: PvAlf Motifs on "-" Strand: Mean Exp. Number 0.00062 Up.Conf.Int. 1 Found 1 227 CAAGCAGAG 219 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 170 aTCTATATAT 161 (Mism.= 1) TFBS AC: RSP01526//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box II /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 195 atACCAAACTCG 206 (Mism.= 2) TFBS AC: RSP02020//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: MYB BS /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 244 cGTAGGTG 251 (Mism.= 1) TFBS AC: RSP02117//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: AP-1 BS /BF: AP-1 Motifs on "-" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 89 TGAGTTAG 82 (Mism.= 0) TFBS AC: RSP02750//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX14/TFBS: MYB46 BS (IRX14) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 196 TACCAAAC 203 (Mism.= 0) TFBS AC: RSP02761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS1 (MYB58) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 196 TACCAAAC 203 (Mism.= 0) TFBS AC: RSP02912//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 47 GGCACGCGta 38 (Mism.= 2) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00912 Up.Conf.Int. 1 Found 1 25 aTCATTTGAT 34 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0011..AC:X63103..OS:Solanum tuberosum..GENE:PAL-1..PROD:phenylalanine ammonia-lyase..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): -18 -14 -12 -10 -8 -6 -4 -2 +3 |Taxon: Dicot | Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.07 T - 0.37 C - 0.25 TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00243 Up.Conf.Int. 1 Found 1 218 TTgATCCAATGG 229 (Mism.= 1) TFBS AC: RSP00613//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: UN Z1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 222 ATCAAGAA 215 (Mism.= 0) TFBS AC: RSP00669//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: PG/TFBS: B-box /BF: fruit nuclear protein extracts Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 151 TGATAATAaAAAAA 138 (Mism.= 1) TFBS AC: RSP00802//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: Box A-1 /BF: BABF Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 164 ATATATAgATATatgATAAT 145 (Mism.= 4) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00666 Up.Conf.Int. 1 Found 1 73 AGAGAGGAA 65 (Mism.= 0) TFBS AC: RSP01755//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS1 /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 12 CAACCACC 19 (Mism.= 0) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 65 ACAATGACaAAt 54 (Mism.= 2) TFBS AC: RSP02035//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YUC8 (At4g28720)/TFBS: STY1 BS (YUC8) /BF: STY1 Motifs on "+" Strand: Mean Exp. Number 0.00183 Up.Conf.Int. 1 Found 1 171 aAACTCTAAGC 181 (Mism.= 1) TFBS AC: RSP02550//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR1/TFBS: E0-1-1 /BF: CBNAC Motifs on "-" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 183 ATGCTTAG 176 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0012..AC:AF002277..OS:Lupinus luteus..GENE:Ypr10.1a..PROD:LlPR10.1A..[ -200: +51]..CDS:+86..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.35 C - 0.16 TFBS AC: RSP00122//OS: pea, Pisum sativum /GENE: AS1/TFBS: Box C /BF: unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 238 CTCCCAC 244 (Mism.= 0) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00094 Up.Conf.Int. 1 Found 1 81 TCCAtGTGTC 72 (Mism.= 1) TFBS AC: RSP00577//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: AT-rich FF2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 41 AATAATTAaATtTTAATTtA 22 (Mism.= 3) TFBS AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/TFBS: A segment /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00208 Up.Conf.Int. 1 Found 1 71 aTGAATTTATG 61 (Mism.= 1) TFBS AC: RSP00999//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 3'-III element /BF: 3AF3 Motifs on "+" Strand: Mean Exp. Number 0.00948 Up.Conf.Int. 1 Found 1 115 TCACTAgCTAA 125 (Mism.= 1) TFBS AC: RSP01221//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: GARE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 160 TtACCACC 153 (Mism.= 1) TFBS AC: RSP02012//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00955 Up.Conf.Int. 1 Found 1 81 tCCATGTGtC 72 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 177 CTATTTATAG 168 (Mism.= 1) TFBS AC: RSP02494//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (7) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 158 ACCACC 153 (Mism.= 0) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "+" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 73 aCACaTGGAG 82 (Mism.= 2) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "+" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 73 aCACaTGGAG 82 (Mism.= 2) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 168 CTATAAATaG 177 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00143 Up.Conf.Int. 1 Found 1 177 CTATTTATAG 168 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0013..AC:AF008597..OS:Catharanthus roseus..GENE:CRSD4H..PROD:desacetoxyvindoline-4-hydroxylase..[ -200: +51]..CDS:+115..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.37 C - 0.08 TFBS AC: RSP00231//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CCAAT box 1 /BF: unknown Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 108 CCAATCA 114 (Mism.= 0) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00646 Up.Conf.Int. 1 Found 1 61 CAGAATAA 54 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 10 GGAGAGAaA 18 (Mism.= 1) TFBS AC: RSP01334//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Box II, mut) /BF: BGTF Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 207 TtTtTCCTTAATATt 193 (Mism.= 3) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 1 129 CCAAAATGT 121 (Mism.= 0) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 15 CTCTCCAT 8 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0014..AC:AF031649..OS:Arabidopsis thaliana..GENE:NAT2..PROD:neutral amino acid transport system II..[ -200: +51]..CDS:+94..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.08 T - 0.38 C - 0.16 TFBS AC: RSP00850//OS: maize (Zea mays) /GENE: H4C7/TFBS: CAT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 123 GCCAAC 118 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 235 AGAGAGAGA 227 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 235 aGAGAGAGA 227 (Mism.= 1) TFBS AC: RSP00949//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: TAGTCAAC motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 205 TAGTCAAC 198 (Mism.= 0) TFBS AC: RSP01219//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: TT box /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 10 TTtCGGCTT 2 (Mism.= 1) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 91 ATACGTGT 84 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 104 TACGTaTACGTC 115 (Mism.= 1) TFBS AC: RSP01702//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 83 AACACGTATa 92 (Mism.= 1) TFBS AC: RSP01720//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: C/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00509 Up.Conf.Int. 1 Found 1 118 cAAGACGTAtAC 107 (Mism.= 2) TFBS AC: RSP01752//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmMYB76/GmMYB92/GmMYB177 BS1 /BF: GmMYB76; GmMYB92; GmMYB177 Motifs on "+" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 89 TATAACGtaTTTTT 102 (Mism.= 2) TFBS AC: RSP02159//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: ACE25 /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 86 ACGT 89 --21-- 111 ACGT 114 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 114 ACGT 111 --21-- 89 ACGT 86 (Mism.= 0/ 0) TFBS AC: RSP02442//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: MYB BS /BF: MYB2; MYB21; MYV108; MYB112; MYB116 Motifs on "-" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 102 AAAAAtACGTTAT 90 (Mism.= 1) TFBS AC: RSP02460//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: MYB BS /BF: MYB2; MYB21; MYV108; MYB112; MYB116 Motifs on "-" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 102 AAAaATACGTTAt 90 (Mism.= 2) TFBS AC: RSP02721//OS: rice (Oryza sativa) /GENE: AK065090/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 155 TACAAGTATgt 165 (Mism.= 2) TFBS AC: RSP02794//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P8 /BF: GT-4 Motifs on "+" Strand: Mean Exp. Number 0.00056 Up.Conf.Int. 1 Found 1 130 GCTTAAAAAC 139 (Mism.= 0) Totally 16 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0015..AC:AF072724..OS:Zea mays..GENE:sbe1..PROD:starch branching enzyme I..[ -200: +51]..CDS:+28..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.31 T - 0.16 C - 0.29 TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00856 Up.Conf.Int. 1 Found 1 245 cGACACGaGGCA 234 (Mism.= 2) TFBS AC: RSP00535//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: LRE-TATA AA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 187 GCCT 184 -- 7-- 176 TATATc 171 (Mism.= 0/ 1) TFBS AC: RSP00735//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CCA1 BS /BF: DET1; CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 100 AAAAATCA 107 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00856 Up.Conf.Int. 1 Found 1 234 TGCCtCGTGTCg 245 (Mism.= 2) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 119 gcAATGAAAG 110 (Mism.= 2) TFBS AC: RSP01862//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE3 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 235 GCCTcGTGTC 244 (Mism.= 1) TFBS AC: RSP02003//OS: Arabidopsis (Arabidopsis thaliana)\ /GENE: ABI5/TFBS: W-box 4 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 218 CGCcGTCACaAT 229 (Mism.= 2) TFBS AC: RSP02692//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: CACT box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 183 CAGgCACTtGGA 194 (Mism.= 2) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0016..AC:AF150686..OS:Solanum tuberosum..GENE:St4CL..PROD:4-coumarate:coenzyme A ligase..[ -200: +51]..CDS:+79..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.32 C - 0.27 TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 152 CACAaGTC 145 (Mism.= 1) TFBS AC: RSP00286//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 2 20 TCTCACCaACC 30 (Mism.= 1) 131 TtTCACCTACC 141 (Mism.= 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 83 GTTTCCATG 91 (Mism.= 0) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 130 CTTTCaccTACCACA 144 (Mism.= 3) TFBS AC: RSP00888//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (2) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 215 AAAAATCTA 223 (Mism.= 0) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00738 Up.Conf.Int. 1 Found 1 21 CTCACCAACCa 31 (Mism.= 1) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 66 CCTTTTTTGG 57 (Mism.= 0) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 20 TCTCACCAACCa 31 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 20 TCTCACCAACCa 31 (Mism.= 1) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 2 20 TCTCACCaACCA 31 (Mism.= 1) 131 TtTCACCTACCA 142 (Mism.= 1) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 66 CCTTTTTTGG 57 (Mism.= 0) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 65 CTTTTTTGGG 56 (Mism.= 1) TFBS AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 66 CCTTTTTTGG 57 (Mism.= 1) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 84 TTTCCATGaAGT 95 (Mism.= 1) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 84 TTTCCATGaAGT 95 (Mism.= 1) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 84 TTTCCATGaAGT 95 (Mism.= 1) TFBS AC: RSP01390//OS: potato (Solanum tuberosum) /GENE: 4CL-1/TFBS: 4cl-CMA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 95 TTGCCCCTGAACAACCCTAAATACCCATAAACTCCCTTTCACCTACCAC 143 (Mism.= 0) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 244 CTGAAAAGCTA 234 (Mism.= 2) TFBS AC: RSP01709//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“SRF”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00958 Up.Conf.Int. 1 Found 1 57 CCAAAAAAGG 66 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00958 Up.Conf.Int. 1 Found 1 66 CCTTTTTTGG 57 (Mism.= 0) TFBS AC: RSP01754//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmMYB92 BS3 /BF: GmMYB92 Motifs on "+" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 2 20 TCTCACCaACC 30 (Mism.= 1) 131 TtTCACCTACC 141 (Mism.= 1) TFBS AC: RSP02138//OS: maize (Zea mays) /GENE: ZmCOMT/TFBS: AC-II /BF: ZmMYB31 Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 21 CTCACCAACCACa 33 (Mism.= 1) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 43 ATTTTTTTAT 52 (Mism.= 0) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 66 CCTTTTTTGG 57 (Mism.= 1) TFBS AC: RSP02393//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VDD/TFBS: CArG1 /BF: STK-SEP3 Motifs on "+" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 57 CCAAAAAAGG 66 (Mism.= 1) TFBS AC: RSP02715//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: AC (DkANR) /BF: DkMyb2 Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 1 AcCCAACCAT 10 (Mism.= 1) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "-" Strand: Mean Exp. Number 0.00404 Up.Conf.Int. 1 Found 1 70 tTTTCCTTTT 61 (Mism.= 1) TFBS AC: RSP02847//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 2 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 251 gaGCACACTG 242 (Mism.= 2) Totally 31 motifs of 27 different TFBSs have been found ____________________________________________________________ >PLPR0017..AC:AF151961..OS:Vigna radiata..GENE:ACS7..PROD:1-aminocyclopropane-1-carboxylic acid synthase..[ -200: +51]..CDS:+116..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.10 T - 0.34 C - 0.30 TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 137 GCCACTTGgC 146 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00100 Up.Conf.Int. 1 Found 1 137 GCCACtTGGC 146 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00100 Up.Conf.Int. 1 Found 1 146 GCCAaGTGGC 137 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "-" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 145 CCAaGTGGCa 136 (Mism.= 2) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "-" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 145 CCAaGTGGCa 136 (Mism.= 2) TFBS AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: CCACC box /BF: seed-specific protein Motifs on "-" Strand: Mean Exp. Number 0.00974 Up.Conf.Int. 1 Found 1 43 CCACC 39 (Mism.= 0) TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "+" Strand: Mean Exp. Number 0.00271 Up.Conf.Int. 1 Found 1 151 TACcCTTTTGG 161 (Mism.= 1) TFBS AC: RSP00284//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box A /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 40 CCGTCC 35 (Mism.= 0) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 146 GCCAAGTGGc 137 (Mism.= 1) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00580 Up.Conf.Int. 1 Found 1 77 TGAATAAATG 68 (Mism.= 1) TFBS AC: RSP00849//OS: maize (Zea mays) /GENE: H3C4/TFBS: CCGTCC motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 40 CCGTCC 35 (Mism.= 0) TFBS AC: RSP00856//OS: maize (Zea mays) /GENE: H4C7/TFBS: CCGTCC motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 40 CCGTCC 35 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00964 Up.Conf.Int. 1 Found 1 91 AGAGAGAGA 83 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 90 GAGAGAGAGtGAGtGAA 74 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 184 ggTTATATATTTA 172 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "+" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 99 AAACCCTA 106 (Mism.= 0) TFBS AC: RSP01846//OS: watermelon (Citrullus vulgaris) /GENE: AGPL1/TFBS: TCCAAAA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 162 TCCAAAA 156 (Mism.= 0) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00241 Up.Conf.Int. 1 Found 1 146 GCCAAGTGgC 137 (Mism.= 1) TFBS AC: RSP02140//OS: maize (Zea mays) /GENE: F5H/TFBS: MBS-1 /BF: ZmMYB31 Motifs on "-" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 44 TCCACC 39 (Mism.= 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 106 TAGGGTTT 99 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 76 CaCTCaCTCTCTCTCT 91 (Mism.= 2) TFBS AC: RSP02415//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 45-48 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00625 Up.Conf.Int. 1 Found 1 37 aCGGTGG 43 (Mism.= 1) TFBS AC: RSP02421//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 39-42 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 5 aGGGAGC 11 (Mism.= 1) TFBS AC: RSP02666//OS: Oryza sativa /GENE: ClpB-cyt/Hsp100/TFBS: HSE /BF: OsHsfA2c; OsHsfB4b Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 236 GAATATTC 243 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 243 GAATATTC 236 (Mism.= 0) TFBS AC: RSP02712//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 4 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 162 TCCAAAAGggT 152 (Mism.= 2) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 170 TATAAATA 177 (Mism.= 0) TFBS AC: RSP02923//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00908 Up.Conf.Int. 1 Found 1 27 GTCACGAGAa 18 (Mism.= 1) TFBS AC: RSP02925//OS: Medicago truncatula /GENE: UGT73K1/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 27 gTCACGAGaA 18 (Mism.= 2) TFBS AC: RSP02927//OS: Medicago truncatula /GENE: UGT73F3/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00838 Up.Conf.Int. 1 Found 1 27 GtCACGAGaA 18 (Mism.= 2) TFBS AC: RSP02995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUS4/TFBS: AtIDD8 BS /BF: AtIDD8 Motifs on "-" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 50 CTTTTGTCC 42 (Mism.= 0) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 49 TTTTGTCC 42 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 49 TTTTGTCC 42 (Mism.= 0) Totally 34 motifs of 32 different TFBSs have been found ____________________________________________________________ >PLPR0018..AC:AF153195..OS:Solanum tuberosum..GENE:ChtC2..PROD:class I chitinase..[ -200: +51]..CDS:+26..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.33 C - 0.24 TFBS AC: RSP00029//OS: wheat (Triticum aestivum) /GENE: LMW-glutenin/TFBS: P-box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00380 Up.Conf.Int. 1 Found 1 16 TGTAAAAG 23 (Mism.= 0) TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "-" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 80 GCCACCTC 73 (Mism.= 0) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00073 Up.Conf.Int. 1 Found 1 54 TAAcAGCCGCC 64 (Mism.= 1) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "-" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 80 GCCACCTCtGCT 69 (Mism.= 1) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 1 223 AAaATGAGGcTTtCT 237 (Mism.= 3) TFBS AC: RSP00870//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: EM2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 16 TGTAAAAGTG 25 (Mism.= 0) TFBS AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/TFBS: CLE-core /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00710 Up.Conf.Int. 1 Found 2 76 GTGGCCCC 83 (Mism.= 1) 125 GTGGTCCT 132 (Mism.= 1) TFBS AC: RSP00949//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: TAGTCAAC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 137 TAGTCAAC 144 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 168 CTATAAATA 176 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01320//OS: tobacco (Nicotiana tabacum) /GENE: PRB-1b/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 54 TAACAGCCGCC 64 (Mism.= 1) TFBS AC: RSP01321//OS: tobacco (Nicotiana tabacum) /GENE: CHN17/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 54 TAACAGCCGCC 64 (Mism.= 1) TFBS AC: RSP01322//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 54 TAACAGCCGCC 64 (Mism.= 1) TFBS AC: RSP01323//OS: tobacco (Nicotiana tabacum) /GENE: GLN2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 54 TAAcAGCCGCC 64 (Mism.= 1) TFBS AC: RSP01324//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn1/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 54 TAACAGCCGCC 64 (Mism.= 1) TFBS AC: RSP01325//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 54 TAACAGCCGCC 64 (Mism.= 1) TFBS AC: RSP01341//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AtEBP Motifs on "+" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 54 TAAcAGCCGCC 64 (Mism.= 1) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP02183//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp24/IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 49 GATTAAaaAAATAC 36 (Mism.= 2) TFBS AC: RSP02231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-consensus /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 58 AGCCGCCG 65 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 58 AGCCGCC 64 (Mism.= 0) TFBS AC: RSP02704//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtKP1/TFBS: KPRE /BF: unknown nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 106 AAtGAGAAATTGAG 119 (Mism.= 1) TFBS AC: RSP02872//OS: Artemisia annua /GENE: DBR2/TFBS: WRKY BS1 /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00495 Up.Conf.Int. 1 Found 1 159 GGTGACAA 152 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 80 GCCACcTCtGC 70 (Mism.= 2) TFBS AC: RSP02930//OS: maize (Zea mays) /GENE: GRMZM2G138689/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00947 Up.Conf.Int. 1 Found 1 11 TaACATGTAA 20 (Mism.= 1) Totally 37 motifs of 36 different TFBSs have been found ____________________________________________________________ >PLPR0019..AC:AF175278..OS:Pisum sativum..GENE:CYP82A1v2..PROD:wound-inducible P450 hydroxylase..[ -200: +51]..CDS:+13..TSS:201 (+1) # Alternative TSS(s): -8 -5 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.08 T - 0.33 C - 0.22 TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 36 AGCAAAGCtA 45 (Mism.= 1) TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00284 Up.Conf.Int. 1 Found 1 202 TCAAAAATATGg 213 (Mism.= 1) TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00923 Up.Conf.Int. 1 Found 1 211 TGGATTtTGTc 221 (Mism.= 2) TFBS AC: RSP00576//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: AT-rich FF1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 65 TAaATCaAATTAaTATTgTA 84 (Mism.= 4) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 215 ATCCATATTTTtGaT 201 (Mism.= 2) TFBS AC: RSP01073//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em2b /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 34 CAAGCAaAG 42 (Mism.= 1) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00589 Up.Conf.Int. 1 Found 1 241 GTGGTGTTAA 232 (Mism.= 1) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 128 GCAGCC 133 (Mism.= 0) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 215 TTTTGTCC 222 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 215 TTTTGTCC 222 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0020..AC:AF202987..OS:Petroselinum crispum..GENE:ACO..PROD:acyl-CoA oxidase..[ -200: +51]..CDS:+17..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.25 C - 0.33 TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 189 GCCACTTtTC 198 (Mism.= 1) TFBS AC: RSP00161//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof1 BSopt /BF: Dof1 Motifs on "+" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 170 ATAAAAAGGGT 180 (Mism.= 0) TFBS AC: RSP00188//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 36 TCAACGTGTa 27 (Mism.= 1) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 105 TCCACGTATC 114 (Mism.= 1) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 137 TGACGTGG 130 (Mism.= 0) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 130 CCACGTCA 137 (Mism.= 0) TFBS AC: RSP00272//OS: tobacco (Nicotiana tabacum) /GENE: artifical construction/TFBS: Type II element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 66 gCACGCtGATC 56 (Mism.= 2) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 105 TCCACGTaTC 114 (Mism.= 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00982 Up.Conf.Int. 1 Found 1 139 GATGACGTGG 130 (Mism.= 1) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00982 Up.Conf.Int. 1 Found 1 139 GATGACGTGG 130 (Mism.= 1) TFBS AC: RSP01094//OS: pea (Pisum sativum) /GENE: GS2/TFBS: GT-1 box /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 98 TgATTGGATAAA 87 (Mism.= 1) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 137 TGACGTGG 130 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 105 TCCACGTATC 114 (Mism.= 0) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 129 TCCACGTCAT 138 (Mism.= 0) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 137 TGACGTGG 130 (Mism.= 0) TFBS AC: RSP02006//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 3 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00371 Up.Conf.Int. 1 Found 1 30 ACGtTGACATcC 41 (Mism.= 2) TFBS AC: RSP02710//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 2 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00984 Up.Conf.Int. 1 Found 1 246 ATGGAgAGGAG 236 (Mism.= 1) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 137 TGACGTGG 130 (Mism.= 0) Totally 18 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0021..AC:AF325187..OS:Phaseolus coccineus..GENE:G564..PROD:suspensor-specific protein..[ -200: +51]..CDS:+57..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.35 C - 0.12 TFBS AC: RSP00272//OS: tobacco (Nicotiana tabacum) /GENE: artifical construction/TFBS: Type II element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 101 TCACGtGGATa 111 (Mism.= 2) TFBS AC: RSP00640//OS: maize (Zea mays) /GENE: GRF1/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 101 TCACGTGG 108 (Mism.= 0) TFBS AC: RSP00641//OS: maize (Zea mays) /GENE: GRF2/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 101 TCACGTGG 108 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00803 Up.Conf.Int. 1 Found 1 100 atCACGTGGA 109 (Mism.= 2) TFBS AC: RSP00700//OS: Brassica oleracea /GENE: SLG13/TFBS: Box V /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 150 ATTTTAtTTGTCaaCT 165 (Mism.= 3) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 109 TCCACGTGat 100 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 109 tcCACGTGAT 100 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 100 ATCACGTGga 109 (Mism.= 2) TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "+" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 17 TCTCCCtCC 25 (Mism.= 1) TFBS AC: RSP01082//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L4 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 15 AATCTCCctCCA 26 (Mism.= 2) TFBS AC: RSP01100//OS: Medicago truncatula /GENE: MtLec5/TFBS: RE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 141 aTgTAGTTgATTTTATTtGT 160 (Mism.= 4) TFBS AC: RSP01135//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: I-box-like sequence /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 74 ATATATGATAAAA 62 (Mism.= 1) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 218 CCAGAGGC 225 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 101 tCACGTGG 108 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 108 CCACGTGa 101 (Mism.= 1) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 109 TCCACGTgAT 100 (Mism.= 1) TFBS AC: RSP01699//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At2g21640/UPOX/TFBS: CARE B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 106 ACGTGAT 100 (Mism.= 0) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00248 Up.Conf.Int. 1 Found 1 110 ATCCACGTGatT 99 (Mism.= 2) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 109 TCCACGT 103 (Mism.= 0) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00592 Up.Conf.Int. 1 Found 1 110 aTcCACGTGATT 99 (Mism.= 2) TFBS AC: RSP01979//OS: Arabidopsis (Arabidopsis thaliana) /GENE: EBF2/TFBS: EIN3 BS2 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 174 ATGTATAC 167 (Mism.= 0) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00631 Up.Conf.Int. 1 Found 1 100 AtCACGTGgA 109 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 109 TCCACGTGat 100 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 101 tCACGTGG 108 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 108 CCACGTGa 101 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 101 TCACGTGG 108 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 108 cCACGTGA 101 (Mism.= 1) TFBS AC: RSP02387//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: Oct(II) /BF: NtWLIM2 Motifs on "+" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 100 ATCACGtGGATa 111 (Mism.= 2) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 109 tCCACGTGaT 100 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 100 atCACGTGGA 109 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00631 Up.Conf.Int. 1 Found 1 109 TcCACGTGaT 100 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 100 atCACGTGGA 109 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 100 atCACGTGGA 109 (Mism.= 2) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 107 CACGTGaT 100 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 100 AtCACGTGGa 109 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 109 tcCACGTGAT 100 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 100 aTCACGTGGa 109 (Mism.= 2) Totally 37 motifs of 35 different TFBSs have been found ____________________________________________________________ >PLPR0022..AC:AF326577..OS:Zea mays..GENE:anthocyanin regulatory B protein..PROD:anthocyanin regulatory B protein..[ -200: +51]..CDS:+389..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.26 T - 0.29 C - 0.24 TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 108 ATAGAAATtAA 118 (Mism.= 1) TFBS AC: RSP00208//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,A /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 7 GCgACGTCAGgT 18 (Mism.= 2) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 7 GCgACGTCAG 16 (Mism.= 1) TFBS AC: RSP00581//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: LRE-TATA LL1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 154 CCTgcTCtTTATATA 168 (Mism.= 3) TFBS AC: RSP00594//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: GATA/2 T /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 82 TcAGATAAGccTAACGA 66 (Mism.= 3) TFBS AC: RSP00808//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 124 GTTAGTT 118 (Mism.= 0) TFBS AC: RSP00810//OS: arabidopsis (Arabidopsis thaliana) /GENE: Ribosomal protein S13-like/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 124 GTTAGTT 118 (Mism.= 0) TFBS AC: RSP00812//OS: arabidopsis (Arabidopsis thaliana) /GENE: Putative phosphate transporter/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 124 GTTAGTT 118 (Mism.= 0) TFBS AC: RSP00813//OS: arabidopsis (Arabidopsis thaliana) /GENE: SIMIP/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 124 GTTAGTT 118 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00912 Up.Conf.Int. 1 Found 1 160 CTtTATATAT 169 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00644 Up.Conf.Int. 1 Found 1 173 tTCTATATAT 164 (Mism.= 1) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 229 TCaCCTCCAC 220 (Mism.= 1) Totally 12 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0023..AC:AF334959..OS:Zea mays..GENE:Brittle-2 (Bt2)..PROD:ADP-glucose pyrophosphorylase small subunit..[ -200: +51]..CDS:+25..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.21 TFBS AC: RSP00031//OS: maize (Zea mays) /GENE: SBEI/TFBS: "-314" /BF: nuclear proteins Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 68 ACATAAAATAAAAgAttcCA 49 (Mism.= 4) TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 39 AGCAAAGaAA 48 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 167 TATAAATtCCAG 178 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00852 Up.Conf.Int. 1 Found 1 69 ACACGTG 75 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 76 ACACGTG 70 (Mism.= 0) TFBS AC: RSP00707//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 2 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00026 Up.Conf.Int. 1 Found 1 68 TACACGTGTA 77 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00026 Up.Conf.Int. 1 Found 1 77 TACACGTGTA 68 (Mism.= 0) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 68 TaCACGTGTa 77 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 77 TaCACGTGTa 68 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 68 TACACGTGtA 77 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 77 TACACGTGtA 68 (Mism.= 1) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 68 TACACGTGtA 77 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 77 TACACGTGtA 68 (Mism.= 1) TFBS AC: RSP01063//OS: arabidopsis (Arabidopsis thaliana) /GENE: Nia2/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 118 ATGATgGATAAT 129 (Mism.= 1) TFBS AC: RSP01175//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 2 /BF: Zmhox1a Motifs on "-" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 86 AGCTaCCCGTa 76 (Mism.= 2) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 69 ACACGTGT 76 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 76 ACACGTGT 69 (Mism.= 0) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 67 GTACACGTGTac 78 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 78 GTACACGTGTac 67 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 68 tACACGTGTa 77 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 77 tACACGTGTa 68 (Mism.= 2) TFBS AC: RSP01966//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 137 GCAAAACT 144 (Mism.= 0) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 68 tACACGTGTA 77 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 77 tACACGTGTA 68 (Mism.= 1) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 69 ACACGTGT 76 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 76 ACACGTGT 69 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 68 tACACGTGtA 77 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 77 tACACGTGtA 68 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 77 tACACGTGTa 68 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 68 TACACGTGTa 77 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 77 TACACGTGTa 68 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 68 tACACGTGtA 77 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 77 tACACGTGtA 68 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 68 tACACGTGtA 77 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.01000 Up.Conf.Int. 1 Found 1 77 tACACGTGtA 68 (Mism.= 2) Totally 35 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0024..AC:X62810..OS:Antirrhinum majus..GENE:deficiens..PROD:DEF A protein..[ -200: +51]..CDS:+106..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.33 C - 0.18 TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 1 57 CACACGTC 50 (Mism.= 0) TFBS AC: RSP00143//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: CE3 /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00985 Up.Conf.Int. 1 Found 1 50 GACGtGTGaC 59 (Mism.= 2) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "+" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 49 TGACGTGT 56 (Mism.= 1) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "-" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 56 aCACGTCA 49 (Mism.= 1) TFBS AC: RSP00423//OS: maize (Zea mays) /GENE: rab17/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 50 GACGTG 55 (Mism.= 0) TFBS AC: RSP00424//OS: maize (Zea mays) /GENE: rab17/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 55 CACGTC 50 (Mism.= 0) TFBS AC: RSP00454//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif e/f /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 153 TACGTAACATa 163 (Mism.= 1) TFBS AC: RSP01084//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE1 /BF: HaDREB2 Motifs on "+" Strand: Mean Exp. Number 0.00770 Up.Conf.Int. 1 Found 1 143 ACCGCAACG 151 (Mism.= 1) TFBS AC: RSP01136//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: TGTCACA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 60 TGTCACA 54 (Mism.= 0) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 49 TGACGTGt 56 (Mism.= 1) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 49 TGACGTGT 56 (Mism.= 0) TFBS AC: RSP01443//OS: rice (Oryza sativa) /GENE: GAMyb/TFBS: GMS-1 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 155 gTAtCGTTGCgGTAC 141 (Mism.= 3) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 49 TGACGTGt 56 (Mism.= 1) TFBS AC: RSP01547//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE1 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 50 GACGTG 55 (Mism.= 0) TFBS AC: RSP01549//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE2 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 55 CACGTC 50 (Mism.= 0) TFBS AC: RSP01663//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARR9 (At3g57040)/TFBS: C-box (1) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 47 TTTGACGTGTGA 58 (Mism.= 0) TFBS AC: RSP01870//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: PAN BS /BF: PAN; ATBZIP21; TGA6; TGA5 Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 55 CACGTC 50 (Mism.= 0) TFBS AC: RSP02007//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 3 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 56 ACAcGTCAAAGt 45 (Mism.= 2) TFBS AC: RSP02017//OS: rice (Oryza sativa) /GENE: BRD1/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 52 CGTGTG 57 (Mism.= 0) TFBS AC: RSP02039//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PGAZAT/TFBS: E1 /BF: AtDOF4.7 Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 136 AAgAtAAAAGGGaAAAGTA 118 (Mism.= 3) TFBS AC: RSP02675//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: GATA element /BF: Unknown GATA binding factor Motifs on "-" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 188 GAATAGATATaT 177 (Mism.= 1) TFBS AC: RSP02767//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAP BS /BF: NAP Motifs on "-" Strand: Mean Exp. Number 0.00197 Up.Conf.Int. 1 Found 1 160 GTTACGTAT 152 (Mism.= 0) TFBS AC: RSP02770//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: VND3 BS /BF: VND3 Motifs on "-" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 162 ATGTTACGTA 153 (Mism.= 1) TFBS AC: RSP02923//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 40 tTCACGAGtT 31 (Mism.= 2) TFBS AC: RSP02924//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00520 Up.Conf.Int. 1 Found 1 40 TtCACGAGTt 31 (Mism.= 2) TFBS AC: RSP02925//OS: Medicago truncatula /GENE: UGT73K1/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00464 Up.Conf.Int. 1 Found 1 40 TTCACGAGTt 31 (Mism.= 1) Totally 26 motifs of 26 different TFBSs have been found ____________________________________________________________ >PLPR0025..AC:X57296..OS:Antirrhinum majus..GENE:fil1..PROD:FIL1..[ -200: +51]..CDS:+65..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.30 C - 0.20 TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 235 AAGaAACACACAAa 248 (Mism.= 2) TFBS AC: RSP00304//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: KN1/KIP BS /BF: KN1/KIP Motifs on "-" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 113 TGACAGGT 106 (Mism.= 0) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 242 TGtTtCTTTTaTCTT 228 (Mism.= 3) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 179 CTATTTATAG 170 (Mism.= 1) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 124 TCATGCAA 131 (Mism.= 0) TFBS AC: RSP02765//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS3 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 168 TACCAAAT 161 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 170 CTATAAATAG 179 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 179 CTATTTATAG 170 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0026..AC:X82841..OS:Arabidopsis thaliana..GENE:Aco..PROD:aconitase..[ -200: +51]..CDS+1165..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.25 C - 0.19 TFBS AC: RSP00031//OS: maize (Zea mays) /GENE: SBEI/TFBS: "-314" /BF: nuclear proteins Motifs on "+" Strand: Mean Exp. Number 0.00806 Up.Conf.Int. 1 Found 1 82 AtATAAAATAAAAAAAtaaA 101 (Mism.= 4) TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 129 CTTtTCGTCA 120 (Mism.= 1) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 229 TTCTCTCTtCT 239 (Mism.= 1) TFBS AC: RSP00701//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (d) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 137 CACGGATC 144 (Mism.= 1) TFBS AC: RSP00836//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 137 CACGGATC 144 (Mism.= 0) TFBS AC: RSP00852//OS: maize (Zea mays) /GENE: H4C7/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 137 CACGGATC 144 (Mism.= 0) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 236 AGAGAGAAA 228 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 236 AGAGAGAAA 228 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 236 AGAGAGAAA 228 (Mism.= 1) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00147 Up.Conf.Int. 1 Found 1 206 CTCACCAACtC 216 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 205 cCTCACCAACtC 216 (Mism.= 2) TFBS AC: RSP01297//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Inr element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 108 aGCCATCAG 116 (Mism.= 1) TFBS AC: RSP01507//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 144 GATCCGTG 137 (Mism.= 0) TFBS AC: RSP01508//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 144 GATCCGTG 137 (Mism.= 0) TFBS AC: RSP01817//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: GAAATA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 160 GGAAATAA 153 (Mism.= 0) TFBS AC: RSP02208//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: P1BS (SmPT3) /BF: PHR1 (P1) Motifs on "-" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 45 GAATATCC 38 (Mism.= 0) TFBS AC: RSP02212//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: P1BS (NtPT4) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 38 GGATATTC 45 (Mism.= 0) TFBS AC: RSP02226//OS: Arabidopsis (Arabidopsis thaliana) /GENE: /TFBS: MYC2/MYC3/MYC4 BS3 /BF: MYC2; MYC3; MYC4 Motifs on "-" Strand: Mean Exp. Number 0.00969 Up.Conf.Int. 1 Found 1 201 CACGAG 196 (Mism.= 0) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00639 Up.Conf.Int. 1 Found 1 153 AaTCTGACAgAT 142 (Mism.= 2) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "+" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 155 aTTTCCTTCT 164 (Mism.= 1) TFBS AC: RSP02919//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PLA2-gamma/TFBS: gamma-MYB1 BS /BF: gamma-MYB1 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 38 GGATATTC 45 (Mism.= 0) TFBS AC: RSP02924//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 203 TACACGAGcc 194 (Mism.= 2) TFBS AC: RSP02927//OS: Medicago truncatula /GENE: UGT73F3/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 203 tACACGAGCc 194 (Mism.= 2) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 136 GTGGGCTC 129 (Mism.= 1) Totally 24 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0027..AC:AJ133743..OS:Arabidopsis thaliana..GENE:ttg1..PROD:Ttg1 protein..[ -200: +51]..CDS:+111..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.33 C - 0.20 TFBS AC: RSP00584//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: TSS MM /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 178 AACCCTCTgGAtT 166 (Mism.= 2) TFBS AC: RSP00631//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CII /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 32 TGTtGTTAgTGTT 44 (Mism.= 2) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 54 GATGACATGA 45 (Mism.= 1) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 54 GATGACATGA 45 (Mism.= 1) TFBS AC: RSP01499//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 206 TTCtCCGTCT 215 (Mism.= 1) TFBS AC: RSP01500//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 206 TTCtCCGTCT 215 (Mism.= 1) TFBS AC: RSP02211//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: P1BS (NtPT3) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00896 Up.Conf.Int. 1 Found 1 118 GAATATAC 125 (Mism.= 0) TFBS AC: RSP02684//OS: rice (Oryza sativa) /GENE: STAR1/TFBS: ASR5 BS /BF: ASR5 Motifs on "+" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 129 AGCCCAT 135 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0028..AC:M94455..OS:Arabidopsis thaliana..GENE:hsp21..PROD:heat shock protein 21..[ -200: +51]..CDS:+77..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.24 C - 0.21 TFBS AC: RSP00009//OS: spinach (Spinacia oleracea) /GENE: NiR/TFBS: GATA /BF: NIT2 ZN-finger protein Motifs on "-" Strand: Mean Exp. Number 0.00939 Up.Conf.Int. 1 Found 2 236 TAGAaA 231 --23-- 207 TATCTA 202 (Mism.= 1/ 0) 115 TtGATA 110 --27-- 82 TATCTA 77 (Mism.= 1/ 0) TFBS AC: RSP00035//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: D1 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 144 CAAAAGG 138 (Mism.= 0) TFBS AC: RSP00163//OS: soybean (Glycine max) /GENE: synthetic oligonucleotides/TFBS: DR5 /BF: ARF1 Motifs on "+" Strand: Mean Exp. Number 0.01000 Up.Conf.Int. 1 Found 1 138 CCTTTTGTCaC 148 (Mism.= 1) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00650 Up.Conf.Int. 1 Found 1 181 CACtCACTTC 190 (Mism.= 1) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 209 TCAACAAACTCA 220 (Mism.= 0) TFBS AC: RSP01651//OS: wheat (Triticum aestivum) /GENE: TaVRN1/TFBS: CArG motif /BF: TaVRT2 Motifs on "+" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 136 CTCcTTTTG 144 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00248 Up.Conf.Int. 1 Found 1 96 CTCGTTTTG 88 (Mism.= 0) TFBS AC: RSP01892//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BCCP2/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 144 CAAAAGGAGAGGTCT 130 (Mism.= 2) TFBS AC: RSP01893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BCCP2/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 144 CAAAAGGAGAGGTCT 130 (Mism.= 2) TFBS AC: RSP02995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUS4/TFBS: AtIDD8 BS /BF: AtIDD8 Motifs on "+" Strand: Mean Exp. Number 0.00573 Up.Conf.Int. 1 Found 1 139 CTTTTGTCa 147 (Mism.= 1) Totally 11 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0029..AC:Z17399..OS:Arabidopsis thaliana..GENE:PIP1b..PROD:PIP1b protein..[ -200: +51]..CDS+1419..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.31 C - 0.22 TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 214 TGGgTTATGTG 204 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 240 AGAGAGaAA 248 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 240 AGAGAGAaA 248 (Mism.= 1) TFBS AC: RSP01084//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE1 /BF: HaDREB2 Motifs on "-" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 165 ACCGAAACT 157 (Mism.= 1) TFBS AC: RSP01085//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE2 /BF: HaDREB2 Motifs on "-" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 165 ACCGAAACT 157 (Mism.= 1) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 157 AGTTTCGgTCaCTaT 171 (Mism.= 3) TFBS AC: RSP02169//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp2/I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 6 ACTTTAATT 14 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 184 CTCTCTCTgctTCTCT 199 (Mism.= 3) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 82 TCATGCAA 89 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0030..AC:Y10379..OS:Arabidopsis thaliana..GENE:ribosomal P40 protein..PROD:ribosomal P40 protein..[ -200: +51]..CDS:+87..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.34 C - 0.16 TFBS AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GC-rich motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00197 Up.Conf.Int. 1 Found 1 248 CGCCGCG 242 (Mism.= 0) TFBS AC: RSP00234//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CArG Box 2 /BF: unknown Motifs on "-" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 196 GCTTATAAGG 187 (Mism.= 1) TFBS AC: RSP00268//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: trap40 /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 129 GGGGGTAGAATAGACA 144 (Mism.= 0) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 154 TTAGGGTTT 162 (Mism.= 0) TFBS AC: RSP00291//OS: arabidopsis (Arabidopsis thaliana) /GENE: Ap40/TFBS: trap-telo /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 129 GGGGGTAGAATAGACA 144 -- 9-- 154 TTAGGGTTT 162 (Mism.= 0/ 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 162 AAACCCTAA 154 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 154 TTAGGGTTT 162 (Mism.= 0) TFBS AC: RSP01069//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: GH3/TFBS: D1 /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 25 CtTtGTGTCTC 35 (Mism.= 2) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 22 AATtcTTTTTCTG 10 (Mism.= 2) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 163 aAAACCCTAA 154 (Mism.= 1) TFBS AC: RSP01526//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box II /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 133 CccCCAAACTCG 122 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 162 AAACCCTA 155 (Mism.= 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 155 TAGGGTTT 162 (Mism.= 0) TFBS AC: RSP02390//OS: maize (Zea mays) /GENE: GRMZM2G089958_T1/TFBS: LBD motif (GRMZM2G089958_T1) /BF: RTCS Motifs on "-" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 249 TCGCCGCG 242 (Mism.= 1) TFBS AC: RSP02738//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: LOB BS /BF: LOB Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 241 TCGCGGCGatT 251 (Mism.= 2) TFBS AC: RSP02859//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: CArG-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 187 CCTTAtAAGC 196 (Mism.= 1) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 162 AAACCCTAA 154 (Mism.= 0) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0031..AC:X70990..OS:Arabidopsis thaliana..GENE:sus1..PROD:sucrose synthase..[ -200: +51]..CDS:+86..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.39 C - 0.16 TFBS AC: RSP00072//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: ACGT box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 5 GTACGTG 11 (Mism.= 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 237 AGAGAGGAA 229 (Mism.= 0) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00857 Up.Conf.Int. 1 Found 1 220 AaGATtGATGA 210 (Mism.= 2) TFBS AC: RSP01631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZCP4/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 59 CTTGAAGGCTA 69 (Mism.= 2) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00822 Up.Conf.Int. 1 Found 1 59 CTTGAAGGCTA 69 (Mism.= 2) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "-" Strand: Mean Exp. Number 0.00736 Up.Conf.Int. 1 Found 1 94 AAACaTGaCTTT 83 (Mism.= 2) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 177 ACATTATATA 168 (Mism.= 0) TFBS AC: RSP02307//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.1) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 125 ATCTTGACCttT 136 (Mism.= 2) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0032..AC:U41998..OS:Arabidopsis thaliana..GENE:ACT2..PROD:actin 2..[ -200: +51]..CDS:+621..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.34 C - 0.19 TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 35 AcTaATTTTTAAA 23 (Mism.= 2) TFBS AC: RSP00681//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 4 /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 21 TAATTAATC 13 (Mism.= 0) TFBS AC: RSP00709//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: I-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 116 TAATTATTT 124 (Mism.= 0) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "-" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 186 AAAATATAT 178 (Mism.= 0) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "-" Strand: Mean Exp. Number 0.00385 Up.Conf.Int. 1 Found 1 73 cGTGACcTGGC 63 (Mism.= 2) TFBS AC: RSP02181//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp22/IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 36 TAACACGAGgGaA 48 (Mism.= 2) TFBS AC: RSP02913//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00302 Up.Conf.Int. 1 Found 1 68 GtCACGTTAT 77 (Mism.= 1) TFBS AC: RSP02920//OS: Medicago truncatula /GENE: CYP93E2/TFBS: N-box /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 37 AaCACGAGGG 46 (Mism.= 1) TFBS AC: RSP02922//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 46 CCCTCGTGTT 37 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0033..AC:U42007..OS:Arabidopsis thaliana..GENE:ACT8..PROD:actin 8..[ -200: +51]..CDS:+634..TSS:201 (+1) # Alternative TSS(s): +72 +11 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.33 C - 0.21 TFBS AC: RSP00022//OS: pea, Pisum sativum /GENE: petE/TFBS: A/T-rich BOX1 /BF: PCF1 Motifs on "+" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 28 ATAATAAAA 36 (Mism.= 0) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "-" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 61 cGTGACaTGGC 51 (Mism.= 2) TFBS AC: RSP01692//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE J /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 85 TTCGATCA 78 (Mism.= 0) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 241 GCCGTTG 247 (Mism.= 0) TFBS AC: RSP02913//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 56 GtCACGTTAT 65 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0034..AC:U71080..OS:Arabidopsis thaliana..GENE:atC4H..PROD:cinnamate-4-hydroxylase..[ -200: +51]..CDS:+87..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.08 T - 0.31 C - 0.37 TFBS AC: RSP00674//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 2 /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 149 CAACCAAACCtCTc 162 (Mism.= 2) TFBS AC: RSP00880//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M1 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 131 CAACGGCAAa 122 (Mism.= 1) TFBS AC: RSP01228//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00074 Up.Conf.Int. 1 Found 1 86 ATTCACCAACTCCC 99 (Mism.= 0) TFBS AC: RSP01229//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 142 CTCAAACCAACCAA 155 (Mism.= 0) TFBS AC: RSP01276//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: Box III /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 105 GTACGTGG 98 (Mism.= 0) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 61 TTtaACGTGATT 50 (Mism.= 2) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "-" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 221 GAaAGCAGAAGa 210 (Mism.= 2) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 125 GCCGTTG 131 (Mism.= 0) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 133 ACCAACG 127 (Mism.= 1) TFBS AC: RSP02492//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (5) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 133 ACCAAC 128 (Mism.= 0) TFBS AC: RSP02917//OS: pear (Pyrus bretschneideri) /GENE: PbANR/TFBS: PbMYB9 BS /BF: PbMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 128 GTTGGTC 134 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0035..AC:U72241..OS:Arabidopsis thaliana..GENE:His1-3..PROD:histone H1-3..[ -200: +51]..CDS:+44..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.21 C - 0.24 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 79 ACACGTGtC 71 (Mism.= 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 54 GATTCCATG 46 (Mism.= 0) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 80 TaCACGTGTC 71 (Mism.= 1) TFBS AC: RSP00417//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: ABRE-CE3 /BF: TRAB1 Motifs on "-" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 107 TACGTGTg 100 --19-- 80 tACaCGTGTC 71 (Mism.= 1/ 2) TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 215 AGCAAAGCAA 224 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00591 Up.Conf.Int. 1 Found 1 79 ACACGTG 73 (Mism.= 0) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 80 TaCACGTGTC 71 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 80 TACACGTGtc 71 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 80 TACACGTGtc 71 (Mism.= 2) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 35 AGAAACAC 28 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 35 AGAAACAC 28 (Mism.= 1) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 116 AGGATCGATtA 106 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00998 Up.Conf.Int. 1 Found 1 71 GACACGTGTA 80 (Mism.= 2) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00810 Up.Conf.Int. 1 Found 1 80 tACACGTGtC 71 (Mism.= 2) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 72 ACACGTGT 79 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 79 ACACGTGT 72 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 168 CTATAAATA 176 (Mism.= 0) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 1 212 TCTTGTCTCT 203 (Mism.= 0) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 81 GTACACGTGTcg 70 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 71 GaCACGTGTa 80 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 80 taCACGTGTC 71 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00727 Up.Conf.Int. 1 Found 1 71 GACACGTGTa 80 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00727 Up.Conf.Int. 1 Found 1 80 tACACGTGTC 71 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 80 taCACGTGTC 71 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 71 gACACGTGTA 80 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 80 tACACGTGTc 71 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 71 GACACGTG 78 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 80 tACACGTGtC 71 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "-" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 80 TaCACGTGtC 71 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 72 ACACGTGT 79 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 79 ACACGTGT 72 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00522 Up.Conf.Int. 1 Found 1 71 GaCACGTGTa 80 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 71 GACACGTGtA 80 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00984 Up.Conf.Int. 1 Found 1 80 tACACGTGTC 71 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 71 GACACGTGTA 80 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 80 TACACGTGTc 71 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 71 GACACGTGtA 80 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 71 GACACGTGTa 80 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00175 Up.Conf.Int. 1 Found 1 71 GACACGTGtA 80 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 78 CACGTGTC 71 (Mism.= 0) TFBS AC: RSP02681//OS: banana (Musa acuminata subgroup Cavendish) /GENE: MaNAC1/TFBS: MYC RE1ext /BF: MaICE1 Motifs on "-" Strand: Mean Exp. Number 0.00015 Up.Conf.Int. 1 Found 1 84 AgCGTaCACGTGTCgTTT 67 (Mism.= 3) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 71 GACACGTGta 80 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00522 Up.Conf.Int. 1 Found 1 80 tACACGTGtC 71 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00522 Up.Conf.Int. 1 Found 1 80 tACACGTGtC 71 (Mism.= 2) Totally 44 motifs of 37 different TFBSs have been found ____________________________________________________________ >PLPR0036..AC:X54490..OS:Bertholletia excelsa..GENE:BE2S1..PROD:2S albumin..[ -200: +51]..CDS:+57..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.21 C - 0.35 TFBS AC: RSP00054//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: C2a-BS /BF: root-sprcific nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 33 GCTTATC 27 (Mism.= 0) TFBS AC: RSP00064//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 131 AGTACGTGGa 122 (Mism.= 1) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 91 GCCACCTCAtCT 102 (Mism.= 1) TFBS AC: RSP00280//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: O2-box /BF: Opaque-1, b-ZIP transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 79 TCCACGTcGA 70 (Mism.= 1) TFBS AC: RSP00301//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: PROL box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 138 TGCAAAG 144 (Mism.= 0) TFBS AC: RSP00442//OS: maize /GENE: cyPPDK1/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 147 gAACTTTGCA 138 (Mism.= 1) TFBS AC: RSP00847//OS: maize (Zea mays) /GENE: H3C4/TFBS: NON /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 92 CCACCTCATC 101 (Mism.= 0) TFBS AC: RSP00882//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: Pb 3 /BF: PBF Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 138 TGCAAAG 144 (Mism.= 0) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 2 69 TtCgACGTGGAA 80 (Mism.= 2) 131 TcCCACGTGcAA 142 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 80 TtCCACGTcGAA 69 (Mism.= 2) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 78 CCACGTCG 71 (Mism.= 0) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 77 CACGTc 72 -- 6-- 65 CATGCA 60 (Mism.= 1/ 0) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 71 cGACGTGG 78 (Mism.= 1) TFBS AC: RSP01276//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: Box III /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00944 Up.Conf.Int. 1 Found 1 130 GTACGTGG 123 (Mism.= 0) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 181 gTTTcTATATTTA 169 (Mism.= 2) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 71 cGACGTGG 78 (Mism.= 1) TFBS AC: RSP01692//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE J /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 15 TTCGATCA 22 (Mism.= 0) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 79 TCCACGT 73 (Mism.= 0) TFBS AC: RSP01988//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: 5A element W /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 1 52 CCAAAAA 46 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "-" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 141 TgCACGTGGg 132 (Mism.= 2) TFBS AC: RSP02158//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: ACE5 /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 125 ACGT 128 -- 6-- 135 ACGT 138 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 138 ACGT 135 -- 6-- 128 ACGT 125 (Mism.= 0/ 0) TFBS AC: RSP02160//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PP2C (At5g59220)/TFBS: ACE5 (PP2C) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 125 ACGT 128 -- 6-- 135 ACGT 138 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 138 ACGT 135 -- 6-- 128 ACGT 125 (Mism.= 0/ 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 140 GCACGTGG 133 (Mism.= 0) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 66 TCATGCAg 59 (Mism.= 1) TFBS AC: RSP02512//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR2/TFBS: AtSGR2-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 66 TCATGCAG 59 (Mism.= 0) TFBS AC: RSP02528//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 125 ACGTACTC 132 (Mism.= 0) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 2 141 TGCACGTGGG 132 (Mism.= 2) 79 TCCACGTCGA 70 (Mism.= 2) TFBS AC: RSP02712//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 4 /BF: DOF2 Motifs on "+" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 146 TCCAAAAGCCc 156 (Mism.= 1) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "-" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 130 GtACGTGGAG 121 (Mism.= 1) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "-" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 130 GtACGTGGAG 121 (Mism.= 1) Totally 34 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0037..AC:D15051..OS:Hordeum vulgare..GENE:Ids-2..PROD:ids2..[ -200: +51]..CDS:+86..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.23 C - 0.29 TFBS AC: RSP00632//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CIV /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 205 TCGtGTTATAATc 193 (Mism.= 2) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00448 Up.Conf.Int. 1 Found 1 119 ATtCcTATTTTgGGT 105 (Mism.= 3) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 116 CCTATTTTGG 107 (Mism.= 1) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 116 CCTATTTTGG 107 (Mism.= 1) TFBS AC: RSP01456//OS: barley (Hordeum vulgare) /GENE: IDS2/TFBS: IDE1 /BF: PtMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 133 ATCAAGCATGCTTCTTGC 150 (Mism.= 0) TFBS AC: RSP01457//OS: barley (Hordeum vulgare) /GENE: IDS2/TFBS: IDE2 /BF: PtMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 24 TTGAACGGCAAGTTTCACGCTGTCACT 50 (Mism.= 0) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "-" Strand: Mean Exp. Number 0.00783 Up.Conf.Int. 1 Found 1 38 AAACtTGCCgTT 27 (Mism.= 2) TFBS AC: RSP01852//OS: rice (Oryza sativa) /GENE: OsYSL2/TFBS: IDE2-consensus /BF: IDEF2 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 24 TTGAACGGCAAGTTTCACGCTGTCACT 50 (Mism.= 0) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 107 CCAAAATAGG 116 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 49 CTCcCaCTCTCgCTCT 64 (Mism.= 3) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0038..AC:M55449..OS:Hordeum vulgare..GENE:RcaA1..PROD:ribulose 1,5-bisphosphate carboxylase activase..[ -200: +51]..CDS:+91..TSS:201 (+1) # Alternative TSS(s): +7 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.23 G - 0.25 T - 0.20 C - 0.32 TFBS AC: RSP00097//OS: maize (Zea mays) /GENE: GapC4/TFBS: 9-mer box /BF: tobacco nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 10 ACGGTCCA 17 (Mism.= 0) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00915 Up.Conf.Int. 1 Found 1 162 TCCACGTGTa 171 (Mism.= 1) TFBS AC: RSP00655//OS: rice (Oryza sativa) /GENE: PAL/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 170 TATTTAA 176 (Mism.= 0) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 9 CAAgACCAA 1 (Mism.= 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00471 Up.Conf.Int. 1 Found 1 24 GATGACTTGG 15 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 162 TCCACGTGTa 171 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00251 Up.Conf.Int. 1 Found 1 171 TACACGTGgA 162 (Mism.= 1) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00251 Up.Conf.Int. 1 Found 1 171 TACACGTGgA 162 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 170 ACACGTGG 163 (Mism.= 0) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 161 ATCCACGTGTaT 172 (Mism.= 1) TFBS AC: RSP01757//OS: soybean (Glycine max) /GENE: a2/TFBS: BBS /BF: B Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 11 GTCAAGAC 4 (Mism.= 0) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 34 GGCCAAGA 41 (Mism.= 0) TFBS AC: RSP02119//OS: fungus Trichoderma harzianum /GENE: ech-42/TFBS: Cre1 BS2 /BF: Cre1 Motifs on "+" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 72 TCTGGGGA 79 (Mism.= 0) TFBS AC: RSP02410//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS3 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 199 ATACTTTG 206 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 171 tACACGTGGA 162 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 171 tACACGTGGA 162 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 171 tACACGTGGA 162 (Mism.= 1) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0039..AC:J02798..OS:Brassica napus..GENE:napA..PROD:1.7S napin seed storage protein..[ -200: +51]..CDS:+45..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.26 C - 0.29 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 61 ACAaGTGGC 53 (Mism.= 1) TFBS AC: RSP00016//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: RY /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 126 CATGCAC 120 (Mism.= 0) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 53 GCCACTTGTC 62 (Mism.= 0) TFBS AC: RSP00061//OS: Brassica napus /GENE: napA/TFBS: B-box /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 53 GCCACTTGTC 62 -- 8-- 71 CAAACACC 78 (Mism.= 0/ 0) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 123 CATGCA 128 -- 6-- 135 CACGTG 140 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 2 130 aATGCA 125 -- 6-- 118 CAtGTG 113 (Mism.= 1/ 1) 27 CATGCt 22 -- 6-- 15 aACGTG 10 (Mism.= 1/ 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 63 TGACAaGTGGCg 52 (Mism.= 2) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 119 CGTgCATGCAT 129 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 134 ACACGTG 140 (Mism.= 0) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 133 TACACGTGaT 142 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 52 cGCCACtTGTCA 63 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 133 taCACGTGAT 142 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 133 TACACGTGat 142 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00923 Up.Conf.Int. 1 Found 1 142 ATCACGTGTa 133 (Mism.= 1) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 133 TACACGTGat 142 (Mism.= 2) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 135 CACGTG 140 -- 5-- 146 CATGCA 151 (Mism.= 0/ 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 112 TCACATGcGT 121 (Mism.= 1) TFBS AC: RSP01699//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At2g21640/UPOX/TFBS: CARE B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 136 ACGTGAT 142 (Mism.= 0) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "+" Strand: Mean Exp. Number 0.00371 Up.Conf.Int. 1 Found 1 132 TTACACGTGATc 143 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 142 AtCACGTGTa 133 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 142 AtCACGTGTA 133 (Mism.= 1) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00954 Up.Conf.Int. 1 Found 1 133 tACACGTGAt 142 (Mism.= 2) TFBS AC: RSP02222//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC-lke box /BF: ORA59 Motifs on "+" Strand: Mean Exp. Number 0.00650 Up.Conf.Int. 1 Found 1 27 GCAGCCGCg 35 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 133 TACACGTGaT 142 (Mism.= 1) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "-" Strand: Mean Exp. Number 0.00542 Up.Conf.Int. 1 Found 1 123 gCACGCATGTG 113 (Mism.= 1) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 88 CTCTCTCAC 96 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00723 Up.Conf.Int. 1 Found 1 133 tACACGTGAt 142 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 133 taCACGTGAT 142 (Mism.= 2) Totally 29 motifs of 27 different TFBSs have been found ____________________________________________________________ >PLPR0040..AC:X69883..OS:Craterostigma plantagineum..GENE:CDeT27-45..PROD:ATP citrate lyase..[ -200: +51]..CDS:+96..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.28 C - 0.21 TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 147 ACGtGTGTCCaC 158 (Mism.= 2) TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 43 cAaATTTTTATC 54 (Mism.= 2) TFBS AC: RSP00186//OS: rice (Oryza sativa), Oryza sativa /GENE: Amy3D/TFBS: G-box motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 13 aTACGTGcCCA 3 (Mism.= 2) TFBS AC: RSP00508//OS: soybean (Glycine max) /GENE: beta-conglicinin alfa'/TFBS: SEF4 BS /BF: SEF4 Motifs on "+" Strand: Mean Exp. Number 0.00738 Up.Conf.Int. 1 Found 1 113 cCATTTTTATgA 124 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 145 ACACGTG 151 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 152 ACACGTG 146 (Mism.= 0) TFBS AC: RSP00613//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: UN Z1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 233 ATCAAGAA 226 (Mism.= 0) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 144 TaCACGTGTg 153 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 144 TACACGTGtg 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 153 cACACGTGtA 144 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 144 TACACGTGtg 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 153 cACACGTGtA 144 (Mism.= 2) TFBS AC: RSP01149//OS: cucumber, Cucumis sativus /GENE: POR/TFBS: C-DP BS1 /BF: cytokinin-dependent protein Motifs on "-" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 77 TTATTAGAGATAT 65 (Mism.= 2) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 2 153 CACACGTGta 144 (Mism.= 2) 14 CAtACGTGCC 5 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 145 ACACGTGT 152 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 152 ACACGTGT 145 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 151 cACGTGTACcTC 140 (Mism.= 2) TFBS AC: RSP01714//OS: Arabidopsis (Arabidopsis thaliana) /GENE: REH1/PIN3 (At1g70940)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 4 GGgCACGTATgT 15 (Mism.= 2) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 143 GTACACGTGTgt 154 (Mism.= 2) TFBS AC: RSP01767//OS: maize (Zea mays) /GENE: Bz1/TFBS: AT-rich element /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 52 TAAAAATTT 44 (Mism.= 0) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 144 tACACGTGTg 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 153 cACACGTGTa 144 (Mism.= 2) TFBS AC: RSP02000//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 3 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00188 Up.Conf.Int. 1 Found 1 34 AAAAGTCAgCAA 45 (Mism.= 1) TFBS AC: RSP02005//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 2 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00861 Up.Conf.Int. 1 Found 1 118 tTTATGACAgCA 129 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 144 tACACGTGTg 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 153 cACACGTGTA 144 (Mism.= 1) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 21 ATTCTGACAtAc 10 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 145 ACACGTGT 152 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 152 ACACGTGT 145 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 153 cACACGTGtA 144 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 144 tACACGTGTg 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 153 CACACGTGTa 144 (Mism.= 1) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 145 ACACGTGTGT 154 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 144 TACACGTGTg 153 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 153 cACACGTGTa 144 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 153 cACACGTGtA 144 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00851 Up.Conf.Int. 1 Found 1 153 cACACGTGtA 144 (Mism.= 2) TFBS AC: RSP02730//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CdeT27/TFBS: CE-1-like /BF: ZmABI4 Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 76 AATAATCACCGACTTTCA 93 (Mism.= 0) Totally 39 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0041..AC:M76725..OS:Chlamydomonas reinhardtii..GENE:hsp70..PROD:70 kDa heat shock protein..[ -200: +51]..CDS:+90..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.33 T - 0.18 C - 0.28 TFBS AC: RSP00572//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: 3'/AT-rich J1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 31 ATATGTCA 24 (Mism.= 0) TFBS AC: RSP00870//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: EM2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 232 TGTAtAAGTG 223 (Mism.= 1) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "-" Strand: Mean Exp. Number 0.00647 Up.Conf.Int. 1 Found 1 212 GCTgAAAGTGG 202 (Mism.= 1) TFBS AC: RSP00877//OS: arabidopsis (Arabidopsis thaliana) /GENE: MCM3/TFBS: Site 2 E2F (D2) /BF: AtE2F Motifs on "-" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 77 CCCGCCAAA 69 (Mism.= 0) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 38 ACCAATCAt 30 (Mism.= 1) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 38 ACCAATCAt 30 (Mism.= 1) TFBS AC: RSP01979//OS: Arabidopsis (Arabidopsis thaliana) /GENE: EBF2/TFBS: EIN3 BS2 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 233 ATGTATAA 226 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0042..AC:D63955..OS:Oryza sativa..GENE:lip19..PROD:cold induction related protein..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.21 C - 0.33 TFBS AC: RSP00024//OS: pea, Pisum sativum /GENE: petE/TFBS: A/T-rich BOX3 /BF: PCF1 Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 60 TATTATTT 53 (Mism.= 0) TFBS AC: RSP00195//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00074 Up.Conf.Int. 1 Found 1 105 TCCGTGTgCCA 95 (Mism.= 1) TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 43 AGaAAAGCAA 52 (Mism.= 1) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 54 TTTTGCTTTTctTTTg 39 (Mism.= 3) TFBS AC: RSP00963//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GLM2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 73 TGAGTTA 79 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 54 TttTGCTTTTCTtTT 40 (Mism.= 3) TFBS AC: RSP01632//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At5g51890/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 238 CTCTAATGCAT 228 (Mism.= 2) TFBS AC: RSP01636//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP2/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 238 CTCTAATGCAT 228 (Mism.= 2) TFBS AC: RSP02526//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 11 TTGTACTA 4 (Mism.= 0) TFBS AC: RSP02529//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 11 TTGTACTA 4 (Mism.= 0) TFBS AC: RSP02546//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AS2/TFBS: WUS BS 2 (AS2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 37 TTTAATAC 30 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00629 Up.Conf.Int. 1 Found 1 168 TATAAATA 175 (Mism.= 0) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0043..AC:AJ003139..OS:Daucus carota..GENE:DHFR-TS..PROD:dihydrofolate reductase-thymidylate synthetase..[ -200: +51]..CDS:+219..TSS:201 (+1) # Alternative TSS(s): +72 +27 +262 |Taxon: Dicot |P Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.38 C - 0.10 TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 87 AATTATTTTTAtA 75 (Mism.= 1) TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 18 AATAATAATAtTAtTAtATA 37 (Mism.= 3) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "-" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 87 AATTATTTTTATa 75 (Mism.= 1) TFBS AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GC-rich motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 242 CtCCGCG 248 (Mism.= 1) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "+" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 147 CgTAAATTATTTATTT 162 (Mism.= 1) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00671 Up.Conf.Int. 1 Found 1 237 GCCAaGgCAG 228 (Mism.= 2) TFBS AC: RSP00307//OS: barley (Hordeum vulgare) /GENE: Chi26/TFBS: GCCAAG motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 237 GCCAAG 232 (Mism.= 0) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 235 GGCGGC 240 (Mism.= 0) TFBS AC: RSP00483//OS: maize (Zea mays) /GENE: Adh1/TFBS: GC-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 240 GCCGC 236 (Mism.= 0) TFBS AC: RSP00677//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: Box 1 /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 2 231 GCAGTG 226 (Mism.= 0) 226 GCAGTG 221 (Mism.= 0) TFBS AC: RSP00710//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: AT1-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 124 TAATTATTTCTaA 136 (Mism.= 1) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00840 Up.Conf.Int. 1 Found 1 189 ATCAgCAACC 180 (Mism.= 1) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 241 tGCCGCC 235 (Mism.= 1) TFBS AC: RSP01503//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 241 AcTCCGCG 248 (Mism.= 1) TFBS AC: RSP01504//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 241 AcTCCGCG 248 (Mism.= 1) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 241 tGCCGCC 235 (Mism.= 1) TFBS AC: RSP01576//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: ICEr2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 241 ACTCCG 246 (Mism.= 0) TFBS AC: RSP01733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM2 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 244 CCGCGT 249 (Mism.= 0) TFBS AC: RSP01762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC13 (At1g32870)/TFBS: UVBox (ANAC13) /BF: NSP1 Motifs on "-" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 236 CCAAGG 231 (Mism.= 0) TFBS AC: RSP02076//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS2 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00147 Up.Conf.Int. 1 Found 1 238 CGCCAAGG 231 (Mism.= 0) TFBS AC: RSP02080//OS: Humicola gricea /GENE: cbh1.1; cbh1.2; egl1; pacC/TFBS: PacC BS (cons) /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00848 Up.Conf.Int. 1 Found 1 237 GCCAAG 232 (Mism.= 0) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP02435//OS: marine diatom (Phaeodactylum tricornutum) /GENE: PtCA1/TFBS: CCRE3 /BF: PtbZIP11 Motifs on "-" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 251 TGACGC 246 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 242 GtGCCGCCAa 233 (Mism.= 2) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 240 GCCGCC 235 (Mism.= 0) TFBS AC: RSP02870//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtJIN1/TFBS: AtCAMTA3 BS /BF: AtCAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 244 CCGCGT 249 (Mism.= 0) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 251 TGACGcGG 244 (Mism.= 1) Totally 34 motifs of 33 different TFBSs have been found ____________________________________________________________ >PLPR0044..AC:L05915..OS:Dianthus caryophyllus..GENE:GST1..PROD:unknown..[ -200: +51]..CDS:+69..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.31 C - 0.23 TFBS AC: RSP00483//OS: maize (Zea mays) /GENE: Adh1/TFBS: GC-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 149 GCCGC 145 (Mism.= 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 11 TATAAATACCAt 22 (Mism.= 1) TFBS AC: RSP00597//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: GT-1/16 JJ1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00712 Up.Conf.Int. 1 Found 1 157 GTTAATTgtTGT 168 (Mism.= 2) TFBS AC: RSP02095//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE1 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 205 TTCATGAA 212 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 212 TTCATGAA 205 (Mism.= 0) TFBS AC: RSP02892//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 145 GCgGCCGGAGg 155 (Mism.= 2) Totally 6 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0045..AC:X75480..OS:Eucalyptus gunnii..GENE:CAD..PROD:cinnamyl-alcohol dehydrogenase..[ -200: +51]..CDS:+117..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.18 T - 0.32 C - 0.30 TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 79 GaCACCTCAGCa 68 (Mism.= 2) TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 238 AcGATAAGA 246 (Mism.= 1) TFBS AC: RSP00259//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd22/TFBS: ATMYB2 BS /BF: ATMYB2 (MYB) Motifs on "+" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 53 TGGTTAG 59 (Mism.= 0) TFBS AC: RSP00722//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 240 GATAAGA 246 (Mism.= 0) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 168 CAAATATAT 176 (Mism.= 1) TFBS AC: RSP01008//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 3 (AC-III) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 61 ACCTAAC 55 (Mism.= 0) TFBS AC: RSP01455//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-III /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 61 ACCTAAC 55 (Mism.= 0) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "-" Strand: Mean Exp. Number 0.00502 Up.Conf.Int. 1 Found 1 101 AgACGTGaCTTT 90 (Mism.= 2) TFBS AC: RSP01757//OS: soybean (Glycine max) /GENE: a2/TFBS: BBS /BF: B Motifs on "-" Strand: Mean Exp. Number 0.00472 Up.Conf.Int. 1 Found 1 16 GTCAAGAC 9 (Mism.= 0) TFBS AC: RSP01926//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: I-box-like /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 237 tACGATAAG 245 (Mism.= 1) TFBS AC: RSP02008//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 4 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 20 AAGGGTCAAgaC 9 (Mism.= 2) TFBS AC: RSP02018//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBa /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 38 CACCTACC 45 (Mism.= 0) TFBS AC: RSP02019//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBb /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 55 GTTAGGTA 62 (Mism.= 0) TFBS AC: RSP02020//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: MYB BS /BF: MYB Motifs on "-" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 45 GGTAGGTG 38 (Mism.= 0) TFBS AC: RSP02130//OS: rice (Oryza sativa) /GENE: OsAns/TFBS: At-MYB2 BS /BF: At-MYB2 Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 59 CTAACCA 53 (Mism.= 0) TFBS AC: RSP02253//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Ep5C/TFBS: MBSII /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 55 GTTAGGT 61 (Mism.= 0) TFBS AC: RSP02307//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.1) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 9 gTCTTGACCCtT 20 (Mism.= 2) TFBS AC: RSP02333//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 7 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 61 ACCTAAC 55 (Mism.= 0) TFBS AC: RSP02572//OS: mangrove tree (Avicennia marina) /GENE: AmMYB1/TFBS: AmMYB1 BS /BF: AmMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 53 TGGTTAG 59 (Mism.= 0) TFBS AC: RSP02747//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 1 (IRX8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 62 TACCTAAC 55 (Mism.= 0) TFBS AC: RSP02755//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS2 (HCT) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 38 CACCTACC 45 (Mism.= 0) TFBS AC: RSP02757//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS2 (CCoAOMT1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 38 CACCTACC 45 (Mism.= 0) TFBS AC: RSP02811//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: AC element (EgCCR) /BF: EgMYB2 Motifs on "-" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 45 GGTAGGTG 38 (Mism.= 0) TFBS AC: RSP02812//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 1 (EgCAD) /BF: EgMYB2 Motifs on "-" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 45 GGTAGGTG 38 (Mism.= 0) TFBS AC: RSP02813//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 2 (EgCAD) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 55 GTTAGGTA 62 (Mism.= 0) TFBS AC: RSP02814//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 1/2 (EgCAD) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 38 CACCTACCGCACCTCtGGtTAGGTa 62 (Mism.= 3) TFBS AC: RSP02905//OS: rice (Oryza sativa) /GENE: Os02t0467500/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 61 ACCTAAC 55 (Mism.= 0) Totally 27 motifs of 27 different TFBSs have been found ____________________________________________________________ >PLPR0046..AC:X79192..OS:Flaveria brownie..GENE:pdk..PROD:pyruvate,orthophosphate dikinase..[ -200: +51]..CDS:+309..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.33 C - 0.25 TFBS AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 76/65 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 143 GAAGGcTTCAAc 154 (Mism.= 2) TFBS AC: RSP01054//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: GT-3a Box III (1) /BF: GT-3a Motifs on "+" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 152 AACGTTACcAT 162 (Mism.= 1) TFBS AC: RSP02190//OS: tomato (Lycopersicon esculentum) /GENE: LeACS4/TFBS: CArG (LeACS4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00900 Up.Conf.Int. 1 Found 1 18 CAAATATtAG 27 (Mism.= 1) Totally 3 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0047..AC:X79095..OS:Flaveria trinervia..GENE:pdk..PROD:pyruvate,orthophosphate dikinase..[ -200: +51]..CDS:+280..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.15 T - 0.34 C - 0.24 TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 196 CAAACGTcCA 205 (Mism.= 1) TFBS AC: RSP01153//OS: maize (Zea mays) /GENE: Em/TFBS: Em1c /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 196 CAAACGTCCA 205 (Mism.= 1) Totally 2 motifs of 2 different TFBSs have been found ____________________________________________________________ >PLPR0048..AC:J02817.1..OS:Triticum aestivum..GENE: GIR..PROD:gibberellin..[ -200: +51] ..CDS: +44..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.14 C - 0.32 TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "+" Strand: Mean Exp. Number 0.00737 Up.Conf.Int. 1 Found 1 220 GCCACCTC 227 (Mism.= 0) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "-" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 58 tTTAAATTcTTTtTTT 43 (Mism.= 3) TFBS AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: AT-rich motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 58 TTTAAAT 52 (Mism.= 0) TFBS AC: RSP00593//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: GATA/2 B /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 67 GAATCTcAT 75 (Mism.= 1) TFBS AC: RSP00669//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: PG/TFBS: B-box /BF: fruit nuclear protein extracts Motifs on "+" Strand: Mean Exp. Number 0.00137 Up.Conf.Int. 1 Found 1 4 TGATAATAcAAAAc 17 (Mism.= 2) TFBS AC: RSP01057//OS: arabidopsis (Arabidopsis thaliana) /GENE: rbcS-1a/TFBS: GT-3a Box III /BF: GT-3a Motifs on "+" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 234 atCGTTACCAA 244 (Mism.= 2) TFBS AC: RSP01093//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 89 TCcAAGCAAAG 99 (Mism.= 1) TFBS AC: RSP01343//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: TCGTGT motif /BF: unknown nuclear actor Motifs on "+" Strand: Mean Exp. Number 0.00713 Up.Conf.Int. 1 Found 1 20 TCGTGT 25 (Mism.= 0) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 20 TCGTGTCC 27 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0049..AC:Z54188..OS:Gossypium hirsutum..GENE:MT1A..PROD:metallothionein-like protein..[ -200: +51]..CDS+1165..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.37 C - 0.20 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00580 Up.Conf.Int. 1 Found 1 134 ACAaGTGGC 126 (Mism.= 1) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 126 GCCACTTGTa 135 (Mism.= 1) TFBS AC: RSP00421//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 115 ACCGAGA 121 (Mism.= 0) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 127 CCACTTG 133 (Mism.= 0) TFBS AC: RSP00649//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C4-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00031 Up.Conf.Int. 1 Found 1 33 cTTTTTTTtAaTGATAAAATtAT 55 (Mism.= 4) TFBS AC: RSP00669//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: PG/TFBS: B-box /BF: fruit nuclear protein extracts Motifs on "+" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 17 TGATtAaATAAAAA 30 (Mism.= 2) TFBS AC: RSP01058//OS: Brassica napus /GENE: extA/TFBS: GT-3a Box III /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 172 TAGTGGAT 165 (Mism.= 0) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "-" Strand: Mean Exp. Number 0.00690 Up.Conf.Int. 1 Found 1 141 CAAcCGTACA 132 (Mism.= 1) TFBS AC: RSP01079//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L1 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 144 ATTCACCctCCC 155 (Mism.= 2) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 175 AGTacCGATCCaTTT 189 (Mism.= 3) TFBS AC: RSP01219//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: TT box /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 110 TTGCGTCTT 102 (Mism.= 1) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 82 CGGCCCt 76 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 127 CCACTTG 133 (Mism.= 0) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "-" Strand: Mean Exp. Number 0.00940 Up.Conf.Int. 1 Found 1 77 CTTTCCCt 70 (Mism.= 1) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0050..AC:X60033..OS:Glycine max..GENE:GH3..PROD:auxin-responsive GH3 product..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): +15 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.11 T - 0.31 C - 0.31 TFBS AC: RSP00112//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 115 TGACGTAA 122 (Mism.= 0) TFBS AC: RSP00220//OS: soybean (Glycine max) /GENE: GH3/TFBS: D1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 18 GCCCTCGTGTCTCCTCAATAAGCTA 42 (Mism.= 0) TFBS AC: RSP00236//OS: soybean (Glycine max) /GENE: GH3/TFBS: D4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 59 CACGCAATCCTTTGTCTCAATAAGTTCCACTC 90 (Mism.= 0) TFBS AC: RSP00256//OS: soybean (Glycine max) /GENE: GH3; synthetic promoter constructions/TFBS: D1 /BF: ARF Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 20 CCTCGTGTCTC 30 (Mism.= 0) TFBS AC: RSP01069//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: GH3/TFBS: D1 /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 20 CCTCGTGTCTC 30 (Mism.= 0) TFBS AC: RSP01070//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: GH3/TFBS: D4 /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 59 CACGCAATCCTTTGTCTC 76 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00094 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00094 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 132 TCACATGTtT 141 (Mism.= 1) TFBS AC: RSP01599//OS: spinach (Spinacia oleracea) /GENE: RPS1/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00391 Up.Conf.Int. 1 Found 1 54 TTTCAAAT 47 (Mism.= 0) TFBS AC: RSP01655//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PID (At2g34650)/TFBS: C/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 113 cATGACGTAAtT 124 (Mism.= 2) TFBS AC: RSP01659//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 113 CATGACGTAaTt 124 (Mism.= 2) TFBS AC: RSP01973//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00972 Up.Conf.Int. 1 Found 1 224 ACCGTGcCT 232 (Mism.= 1) TFBS AC: RSP02447//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS2 /BF: HB05; HB12 Motifs on "+" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 150 CAATTATTT 158 (Mism.= 0) TFBS AC: RSP02779//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL6 BS (MYB90) /BF: NTL6 Motifs on "-" Strand: Mean Exp. Number 0.00611 Up.Conf.Int. 1 Found 1 121 TACGTCA 115 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 167 TATAAATA 174 (Mism.= 0) TFBS AC: RSP02927//OS: Medicago truncatula /GENE: UGT73F3/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 28 GACACGAGgg 19 (Mism.= 2) Totally 18 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0051..AC:X56139..OS:Glycine max..GENE:sc514..PROD:lipoxygenase..[ -200: +51]..CDS:+76..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.28 C - 0.18 TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 176 TATAAATACCAa 187 (Mism.= 1) TFBS AC: RSP00594//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: GATA/2 T /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 229 TGgGAaAAGATTAACaA 245 (Mism.= 3) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00899 Up.Conf.Int. 1 Found 1 3 ATgCCACTGTGT 14 (Mism.= 1) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00553 Up.Conf.Int. 1 Found 1 98 CaCCTCCTC 90 (Mism.= 1) TFBS AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 111 TGAATTAAcCG 121 (Mism.= 1) TFBS AC: RSP00955//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAP/TFBS: T/G-box /BF: JAMYC2; JAMYC10 Motifs on "+" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 70 AgAACGTGTTGc 81 (Mism.= 2) TFBS AC: RSP01032//OS: arabidopsis (Arabidopsis thaliana) /GENE: SOC1/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 231 CCAAAAGAAG 222 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 222 CTTCTTTTGG 231 (Mism.= 1) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "+" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 119 CCGgTGGAG 127 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 175 CTATAAATA 183 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 175 CTATAAATAC 184 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 175 CTATAAATAC 184 (Mism.= 0) TFBS AC: RSP01604//OS: sweet potato (Ipomoea batatas) /GENE: Sporamin; beta-amylase/TFBS: SP8a /BF: SPF1 Motifs on "+" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 8 ACTGTGTA 15 (Mism.= 0) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 45 TGATtCTTTTCgaTT 31 (Mism.= 3) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 222 CTTCTTTTGG 231 (Mism.= 1) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0052..AC:X77993..OS:Helianthus annuus..GENE:SF18..PROD:SF18..[ -200: +51]..CDS+1165..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.38 C - 0.20 TFBS AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/TFBS: Box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 17 AGAtTTATTAAA 28 (Mism.= 1) TFBS AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS5 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 248 AACCAATaCC 239 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 56 ACACGTG 62 (Mism.= 0) TFBS AC: RSP00645//OS: tobacco (Nicotiana tabacum) /GENE: prxC2/TFBS: box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 17 AGAtTTATTAAA 28 (Mism.= 1) TFBS AC: RSP00681//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 4 /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00479 Up.Conf.Int. 1 Found 1 89 TAATTAATC 81 (Mism.= 0) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 251 CAAAACCAA 243 (Mism.= 0) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 41 AAAATATAT 49 (Mism.= 0) TFBS AC: RSP00935//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: CT element /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 191 CCTCTtCTTCgCTC 204 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 55 caCACGTGAT 64 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 64 ATCACGTGTg 55 (Mism.= 1) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 62 GATGAAGTTT 71 (Mism.= 2) TFBS AC: RSP01154//OS: maize (Zea mays) /GENE: Em/TFBS: Em1d /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00640 Up.Conf.Int. 1 Found 1 130 ATTACGTGTg 121 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00792 Up.Conf.Int. 1 Found 1 56 ACACGTGa 63 (Mism.= 1) TFBS AC: RSP01261//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS8 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 129 TTACGTGT 122 (Mism.= 0) TFBS AC: RSP01699//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At2g21640/UPOX/TFBS: CARE B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 58 ACGTGAT 64 (Mism.= 0) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "+" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 54 TcACACGTGATg 65 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 64 AtCACGTGTg 55 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00698 Up.Conf.Int. 1 Found 1 64 AtCACGTGTg 55 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00463 Up.Conf.Int. 1 Found 1 55 cACACGTGAt 64 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 55 CACACGTGat 64 (Mism.= 2) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 65 CAtCACGTGTgA 54 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 56 ACACGTGa 63 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 63 tCACGTGT 56 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 56 aCACGTGA 63 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 55 CACACGTGat 64 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00698 Up.Conf.Int. 1 Found 1 55 cACACGTGaT 64 (Mism.= 2) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00964 Up.Conf.Int. 1 Found 1 57 CACGTGaT 64 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 62 CACGTGTg 55 (Mism.= 1) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 55 cACACGTGAt 64 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 55 caCACGTGAT 64 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 55 CaCACGTGaT 64 (Mism.= 2) Totally 31 motifs of 30 different TFBSs have been found ____________________________________________________________ >PLPR0053..AC:L11707..OS:Hevea brasiliensis..GENE:SODMn..PROD:superoxide dismutase (manganese)..[ -200: +51]..CDS:+25..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.24 C - 0.27 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 159 cGTGGTTtTATA 170 (Mism.= 2) TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00942 Up.Conf.Int. 1 Found 1 132 TGACGTCGC 140 (Mism.= 1) TFBS AC: RSP00231//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CCAAT box 1 /BF: unknown Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 38 CCAATCA 32 (Mism.= 0) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 189 AGAAAGAAA 181 (Mism.= 0) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 113 GATGACCTGG 122 (Mism.= 1) TFBS AC: RSP01138//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region C /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 157 GCCGTGGTTTTA 168 (Mism.= 2) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 164 tTtTATATAT 173 (Mism.= 2) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "+" Strand: Mean Exp. Number 0.00861 Up.Conf.Int. 1 Found 2 113 GaTGACcTGGC 123 (Mism.= 2) 130 cGTGACGTcGC 140 (Mism.= 2) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00859 Up.Conf.Int. 1 Found 1 39 tCCAATCAG 31 (Mism.= 1) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00859 Up.Conf.Int. 1 Found 1 39 tCCAATCAG 31 (Mism.= 1) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 156 TccTGCTTTTCTCTT 142 (Mism.= 2) TFBS AC: RSP02189//OS: tomato (Lycopersicon esculentum) /GENE: LeACS2/TFBS: CArG (LeACS2-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 49 CCTAAACTAG 40 (Mism.= 1) TFBS AC: RSP02847//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 2 /BF: JRE-4 Motifs on "+" Strand: Mean Exp. Number 0.00638 Up.Conf.Int. 1 Found 1 6 AaGCACACTG 15 (Mism.= 1) TFBS AC: RSP02923//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 135 GTCACGAGAc 126 (Mism.= 1) Totally 15 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0054..AC:X57845..OS:Hordeum vulgare..GENE:nitrate reductase..PROD:nitrate reductase..[ -200: +51]..CDS:+111..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.24 T - 0.27 C - 0.29 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 2 162 TGTGtgTATATA 173 (Mism.= 2) 164 TGTGtaTATATA 175 (Mism.= 2) TFBS AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS7 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 90 aGGATAGGGC 99 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 168 TATAtATACCtG 179 (Mism.= 2) TFBS AC: RSP00705//OS: Brassica oleracea /GENE: SFR2/TFBS: W-box /BF: trnascription factors of WRKY family Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 22 ttTTGACTGACT 33 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 63 AGAGAGAtA 71 (Mism.= 1) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00633 Up.Conf.Int. 1 Found 1 242 gAAATGAAAG 233 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00651 Up.Conf.Int. 1 Found 1 165 gTgTATATAT 174 (Mism.= 2) TFBS AC: RSP02123//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: GARE /BF: GAMYB-like Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 59 AAACAGA 65 (Mism.= 0) TFBS AC: RSP02157//OS: Arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: PB Element (ERE) /BF: AtWhy1 Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 28 GTCAAAAT 21 (Mism.= 0) TFBS AC: RSP02322//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DGAT1/TFBS: CE1-like (1) /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 183 CcACACCGCTT 193 (Mism.= 1) TFBS AC: RSP02418//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 78-82/85-87 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 33 TCGATCTTGG 42 (Mism.= 1) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 28 GTCAAAAT 21 (Mism.= 0) Totally 13 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0055..AC:X96551..OS:Hordeum vulgare..GENE:Per1..PROD:peroxiredoxin..[ -200: +51]..CDS:+66..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.27 T - 0.18 C - 0.35 TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00756 Up.Conf.Int. 1 Found 1 49 CCACCcACCCaC 38 (Mism.= 2) TFBS AC: RSP00217//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: motif III-motif III /BF: unknown bZIP proteins Motifs on "-" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 125 GgCGCGTtGC 116 --18-- 97 GCCtCGTGGC 88 (Mism.= 2/ 1) TFBS AC: RSP00234//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CArG Box 2 /BF: unknown Motifs on "-" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 176 GCTTTTATAG 167 (Mism.= 2) TFBS AC: RSP00433//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB84 BS /BF: AtMYB84 Motifs on "+" Strand: Mean Exp. Number 0.00303 Up.Conf.Int. 1 Found 1 38 GtGGGTgGGTGG 49 (Mism.= 2) TFBS AC: RSP00660//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: -300 box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 142 TGTAGAA 136 (Mism.= 0) TFBS AC: RSP00870//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: EM2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 142 TGTAgAAGTG 133 (Mism.= 1) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 50 TCCAcCCAcCCA 39 (Mism.= 2) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 112 TCATGCAA 119 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0056..AC:X63093..OS:Lycopersicon esculentum..GENE:gast1..PROD:gast1..[ -200: +51]..CDS:+40..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.30 C - 0.19 TFBS AC: RSP00225//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS3 /BF: LFY; WUS Motifs on "-" Strand: Mean Exp. Number 0.00009 Up.Conf.Int. 1 Found 1 243 CCATTGTAGTAAT 231 (Mism.= 1) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00737 Up.Conf.Int. 1 Found 1 232 TTAcTaCAATGG 243 (Mism.= 2) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00938 Up.Conf.Int. 1 Found 1 145 CCACTTG 151 (Mism.= 0) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 31 ATCaATATTTTtGGa 17 (Mism.= 3) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 1 216 AGAGAGGAA 208 (Mism.= 0) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "+" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 101 CtGTTGGAG 109 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 165 CTATAAATA 173 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 174 CTATTTATAG 165 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "+" Strand: Mean Exp. Number 0.00938 Up.Conf.Int. 1 Found 1 145 CCACTTG 151 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 165 CTATAAATAG 174 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 174 CTATTTATAG 165 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0057..AC:U26423..OS:Lycopersicon esculentum..GENE:tas14..PROD:dehydrin TAS14..[ -200: +51]..CDS:+79..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.12 T - 0.37 C - 0.25 TFBS AC: RSP00021//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box7 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 225 AcAAAGTAAAAA 236 (Mism.= 1) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00895 Up.Conf.Int. 1 Found 1 244 TgTtTAATTTTTT 232 (Mism.= 2) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 83 CAAATGAAAG 74 (Mism.= 0) TFBS AC: RSP01167//OS: maize (Zea mays) /GENE: pMS1/TFBS: TATA box /BF: HMG proteins Motifs on "+" Strand: Mean Exp. Number 0.00495 Up.Conf.Int. 1 Found 1 29 TAAATATCT 37 (Mism.= 0) TFBS AC: RSP02566//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLD/TFBS: BRRE /BF: BZR1 Motifs on "-" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 90 ATCGTGGcAA 81 (Mism.= 1) TFBS AC: RSP02721//OS: rice (Oryza sativa) /GENE: AK065090/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 203 TtCAAGTATgG 193 (Mism.= 2) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0058..AC:X71399..OS:Lupinus luteus..GENE:glutamate-ammonia ligase..PROD:glutamate-ammonia ligase..[ -200: +51]..CDS:+82..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.43 G - 0.12 T - 0.30 C - 0.16 TFBS AC: RSP00020//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box6 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00763 Up.Conf.Int. 1 Found 1 16 GTCGgGTAAAcA 5 (Mism.= 2) TFBS AC: RSP00040//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (D) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 8 AACAAAC 2 (Mism.= 0) TFBS AC: RSP00400//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: Myba /BF: Myb Motifs on "+" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 34 CGGTTG 39 (Mism.= 0) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00192 Up.Conf.Int. 1 Found 1 219 TcTTGCTTcTTCTTTC 204 (Mism.= 2) TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 36 GTTGGaTtATAAT 48 (Mism.= 2) TFBS AC: RSP01046//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: NON /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 44 tAATCCAAC 36 (Mism.= 1) TFBS AC: RSP01092//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 1* /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 20 ATAGAATCTAA 30 (Mism.= 0) TFBS AC: RSP01507//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 197 aATCCGTG 204 (Mism.= 1) TFBS AC: RSP01508//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 197 aATCCGTG 204 (Mism.= 1) TFBS AC: RSP01526//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box II /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 176 CcACCAAACTCa 187 (Mism.= 2) TFBS AC: RSP01822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1/TFBS: MYB1 site /BF: AtMYB30 Motifs on "-" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 8 AACAAAC 2 (Mism.= 0) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 204 GAaAGaAGAAGC 215 (Mism.= 2) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 179 GTGGTTTTTA 170 (Mism.= 2) TFBS AC: RSP02748//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 2 (IRX8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00520 Up.Conf.Int. 1 Found 1 177 CACCAAAC 184 (Mism.= 0) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0059..AC:M72708..OS:Zea mays..GENE:zein protein..PROD:zein protein..[ -200: +51]..CDS:+63..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.27 C - 0.23 TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 131 TGACGTGGA 123 (Mism.= 1) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 131 TGACGTGG 124 (Mism.= 0) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 124 CCACGTCA 131 (Mism.= 0) TFBS AC: RSP00442//OS: maize /GENE: cyPPDK1/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 14 TAACTTTGtA 5 (Mism.= 1) TFBS AC: RSP00495//OS: wheat (Triticum aestivum) /GENE: LMW-glutenin/TFBS: P-box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00491 Up.Conf.Int. 1 Found 1 53 TGTAAAGT 60 (Mism.= 0) TFBS AC: RSP00686//OS: barley (Hordeum vulgare) /GENE: C-hordein/TFBS: E-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00491 Up.Conf.Int. 1 Found 1 53 TGTAAAGT 60 (Mism.= 0) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 10 AGTTAGcTTC 19 (Mism.= 1) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 131 TGACGTGG 124 (Mism.= 0) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 123 TCCACGTCAT 132 (Mism.= 0) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 131 TGACGTGG 124 (Mism.= 0) TFBS AC: RSP01981//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 152 GTTTTGGAA 144 (Mism.= 0) TFBS AC: RSP02007//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 3 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 55 ACAtGTCAAgGG 44 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 172 CCATTTATAG 163 (Mism.= 0) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 129 TCATGCAA 136 (Mism.= 0) TFBS AC: RSP02519//OS: rice (Oryza sativa, japonica/indica) /GENE: Gn1a/OsCKX2/TFBS: DBS /BF: DST Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 178 aGCTAGCCATT 168 (Mism.= 1) TFBS AC: RSP02525//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 111 ATGTACTA 118 (Mism.= 0) TFBS AC: RSP02930//OS: maize (Zea mays) /GENE: GRMZM2G138689/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 48 TGACATGTAA 57 (Mism.= 0) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 131 TGACGTGG 124 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 163 CTATAAATGG 172 (Mism.= 0) Totally 19 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0060..AC:X51599 S54701..OS:Nicotiana tabacum..GENE:CHN50..PROD:chitinase..[ -200: +51]..CDS:+11..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.11 T - 0.34 C - 0.19 TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 71 TTTATAATTTTaT 59 (Mism.= 1) TFBS AC: RSP01312//OS: soybean (Glycine max) /GENE: 11S A2B1a/TFBS: Regulatory Motif 2 /BF: unknown seed embryo nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 20 aAATcATTTCCTAAa 34 (Mism.= 3) TFBS AC: RSP01985//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Alfin1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00433 Up.Conf.Int. 1 Found 1 186 CGCCACT 192 (Mism.= 0) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 120 ATTTTTTTAT 111 (Mism.= 0) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0061..AC:X88847..OS:Nicotiana tabacum..GENE:NTM19..PROD:NTM19..[ -200: +51]..CDS:+40..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.36 C - 0.22 TFBS AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 42 CATGCAA 36 (Mism.= 0) TFBS AC: RSP01088//OS: sunflower (Helianthus annuus) /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/TFBS: CuRE 2 /BF: CRR1 Motifs on "+" Strand: Mean Exp. Number 0.00913 Up.Conf.Int. 1 Found 1 207 GaGTACCA 214 (Mism.= 1) TFBS AC: RSP01973//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 237 ACCaTGGCT 245 (Mism.= 1) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 83 TGATTGACaTaA 94 (Mism.= 2) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 210 TACCAACC 217 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0062..AC:X81560..OS:Nicotiana tabacum..GENE:Sp41a..PROD:(1-)-beta-glucanase..[ -200: +51]..CDS:+188..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.39 C - 0.18 TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 61 CATGaA 66 -- 6-- 73 CACtTG 78 (Mism.= 1/ 1) TFBS AC: RSP00301//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: PROL box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 19 TGCAAAG 25 (Mism.= 0) TFBS AC: RSP00442//OS: maize /GENE: cyPPDK1/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 28 aAACTTTGCA 19 (Mism.= 1) TFBS AC: RSP00882//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: Pb 3 /BF: PBF Motifs on "+" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 19 TGCAAAG 25 (Mism.= 0) TFBS AC: RSP00970//OS: soybean (Glycine max) /GENE: Auxin-regulated genes/TFBS: CRE (G/A) /BF: STF1; STF2; STGA1; Motifs on "-" Strand: Mean Exp. Number 0.00386 Up.Conf.Int. 1 Found 1 75 GTGACGCAt 67 (Mism.= 1) TFBS AC: RSP02033//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BNQ3/TFBS: CArG box (BNQ3) /BF: [AP3+PI] heterodimer Motifs on "+" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 166 CCTATATAAG 175 (Mism.= 0) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 40 GTCAAAAT 47 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0063..AC:U35619..OS:Nicotiana tabacum..GENE:rbcmtT..PROD:ribulose-1,5 bisphosphate carboxylase N-methyl transferase/..[ -200: +51]..CDS:+94..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.28 C - 0.13 TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 54 AATaATTTTTAAA 66 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 60 AATTATTTTTAAA 48 (Mism.= 0) TFBS AC: RSP00129//OS: maize (Zea mays) /GENE: Bronze2/TFBS: R-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00971 Up.Conf.Int. 1 Found 1 197 CACGAC 192 (Mism.= 0) TFBS AC: RSP00158//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00647 Up.Conf.Int. 1 Found 1 103 TAgTTGCTTAA 113 (Mism.= 1) TFBS AC: RSP00207//OS: rice (Oryza sativa), Oryza sativa /GENE: PHYA/TFBS: GTE /BF: GT-2 Motifs on "-" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 150 GCGGTAATT 142 (Mism.= 0) TFBS AC: RSP00299//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-2 /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 143 ATTaCCGCaAAT 154 (Mism.= 2) TFBS AC: RSP00739//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 1 homolog (2) /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 226 aATCTAgCAACC 237 (Mism.= 2) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 130 GGTGACGTTA 121 (Mism.= 1) TFBS AC: RSP01084//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE1 /BF: HaDREB2 Motifs on "+" Strand: Mean Exp. Number 0.00493 Up.Conf.Int. 1 Found 1 146 ACCGCAAAT 154 (Mism.= 1) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "-" Strand: Mean Exp. Number 0.00364 Up.Conf.Int. 1 Found 1 130 GGTGACGTTA 121 (Mism.= 0) TFBS AC: RSP02017//OS: rice (Oryza sativa) /GENE: BRD1/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00971 Up.Conf.Int. 1 Found 1 194 CGTGTG 199 (Mism.= 0) TFBS AC: RSP02079//OS: Humicola gricea /GENE: pacC/TFBS: CreA BS /BF: CreA Motifs on "+" Strand: Mean Exp. Number 0.00923 Up.Conf.Int. 1 Found 1 84 GTGGGG 89 (Mism.= 0) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00467 Up.Conf.Int. 1 Found 1 193 TCGTGTGT 200 (Mism.= 1) TFBS AC: RSP02424//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: SEQ23 /BF: WRKY70 Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 41 aAATACTTTTaAAAaT 56 (Mism.= 3) Totally 14 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0064..AC:X87946..OS:Oryza sativa..GENE:ZB8..PROD:phenylalanine ammonia-lyase..[ -200: +51]..CDS:+137..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.15 T - 0.18 C - 0.45 TFBS AC: RSP00510//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: Box T /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00912 Up.Conf.Int. 1 Found 1 119 cATCACcAaCCCCCCT 134 (Mism.= 3) TFBS AC: RSP00595//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: box II EE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 175 GCTTAAaTA 167 (Mism.= 1) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 64 TTtTCTCTCCT 74 (Mism.= 1) TFBS AC: RSP00655//OS: rice (Oryza sativa) /GENE: PAL/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 167 TATTTAA 173 (Mism.= 0) TFBS AC: RSP01205//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 165 CCTATTTAAG 174 (Mism.= 1) TFBS AC: RSP01710//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Intermediate” /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 165 CCTATTTAAG 174 (Mism.= 0) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00567 Up.Conf.Int. 1 Found 1 30 TCGTGTGC 23 (Mism.= 0) TFBS AC: RSP02516//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-2 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 38 TGGAAGTTTCgt 27 (Mism.= 2) TFBS AC: RSP02530//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 3 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 227 TAGTACAC 234 (Mism.= 0) TFBS AC: RSP02766//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ATAF1 BS /BF: ATAF1 Motifs on "-" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 35 AAGTTTCGTG 26 (Mism.= 2) TFBS AC: RSP02768//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC055 BS /BF: ANAC055 Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 35 AAGTTtCGTG 26 (Mism.= 1) TFBS AC: RSP02769//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC019 BS /BF: ANAC019 Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 35 AAGTTtCGTG 26 (Mism.= 1) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "+" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 28 cGAAACTTCC 37 (Mism.= 1) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0065..AC:X54314..OS:Oryza sativa..GENE:GluB-1..PROD:glutelin..[ -200: +51]..CDS:+45..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 TFBS AC: RSP00041//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (P) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 127 CAACAAACTATATC 140 (Mism.= 0) TFBS AC: RSP00072//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: ACGT box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 120 GTACGTG 126 (Mism.= 0) TFBS AC: RSP00405//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adjb /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 13 TTTGGAGT 6 (Mism.= 0) TFBS AC: RSP00442//OS: maize /GENE: cyPPDK1/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 72 cAACTTTGCA 63 (Mism.= 1) TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 106 CTTGTaGTgTTAA 94 (Mism.= 2) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 128 AACAAACTATATC 140 (Mism.= 1) TFBS AC: RSP00871//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00408 Up.Conf.Int. 1 Found 1 34 GcTGAGTCAT 43 (Mism.= 1) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "+" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 12 aAAGcACCAGAAGtT 26 (Mism.= 3) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 128 AACAAACTATATC 140 (Mism.= 1) TFBS AC: RSP01481//OS: rice (Oryza sativa) /GENE: GluB-1/TFBS: OSMYB5 BS (P) /BF: OSMYB5 Motifs on "+" Strand: Mean Exp. Number 0.00013 Up.Conf.Int. 1 Found 1 123 CGTGCAACAAACTATA 138 (Mism.= 0) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "+" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 154 aGATGCTTTTtTaTT 168 (Mism.= 3) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 77 AAAGGCAA 70 (Mism.= 0) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0066..AC:X58877 S76586..OS:Oryza sativa..GENE:gns1..PROD:beta-glucanase..[ -200: +51]..CDS:+130..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.27 T - 0.24 C - 0.25 TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 238 ACaCGCCTCCTC 227 (Mism.= 1) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 34 TGGTCAATTG 43 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 33 cTGGTCAATTg 43 (Mism.= 2) TFBS AC: RSP00745//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 5 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00568 Up.Conf.Int. 1 Found 1 126 GAAgGGTTATcT 115 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 4 139 AGAgAGAGA 131 (Mism.= 1) 137 AGAgAGAGA 129 (Mism.= 1) 135 AGAgAGAGA 127 (Mism.= 1) 133 AGAgAGAGA 125 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 4 139 AGAGAGAGA 131 (Mism.= 0) 137 AGAGAGAGA 129 (Mism.= 0) 135 AGAGAGAGA 127 (Mism.= 0) 133 AGAGAGAGA 125 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 4 139 AGAGAGAGA 131 (Mism.= 1) 137 AGAGAGAGA 129 (Mism.= 1) 135 AGAGAGAGA 127 (Mism.= 1) 133 AGAGAGAGA 125 (Mism.= 1) TFBS AC: RSP01229//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00063 Up.Conf.Int. 1 Found 1 196 CTCAcACCAACgAA 209 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00018 Up.Conf.Int. 1 Found 3 142 GgcAGAGAGAGAGAGAg 126 (Mism.= 3) 140 cAGAGAGAGAGAGAGAA 124 (Mism.= 1) 138 GAGAGAGAGAGAGAagg 122 (Mism.= 3) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 43 cAATTGACCAg 33 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 43 cAATTGACCAg 33 (Mism.= 2) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 64 TTCAtTCATTT 54 (Mism.= 1) TFBS AC: RSP02233//OS: Artemisia annua /GENE: ADS/TFBS: Wb-box /BF: AaWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 31 AgcTGGTCAATTGG 44 (Mism.= 2) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00063 Up.Conf.Int. 1 Found 4 122 CctTCTCTCTCTCTCT 137 (Mism.= 2) 124 tTCTCTCTCTCTCTCT 139 (Mism.= 1) 126 CTCTCTCTCTCTCTgc 141 (Mism.= 2) 128 CTCTCTCTCTCTgcCT 143 (Mism.= 2) Totally 28 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0067..AC:X51910..OS:Oryza sativa..GENE:GOS2..PROD:GOS2..[ -200: +51]..CDS+1177..TSS:201 (+1) # Alternative TSS(s): +72 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.15 C - 0.29 TFBS AC: RSP00161//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof1 BSopt /BF: Dof1 Motifs on "-" Strand: Mean Exp. Number 0.00989 Up.Conf.Int. 1 Found 2 191 GGGAAAAGGGG 181 (Mism.= 0) 101 GTTAAAAGGTT 91 (Mism.= 0) TFBS AC: RSP00254//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: Py box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 183 CCTTTTC 189 (Mism.= 0) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00568 Up.Conf.Int. 1 Found 1 128 TcCTCTCTCCT 118 (Mism.= 1) TFBS AC: RSP00676//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: PY-Box /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 183 CCTTTTC 189 (Mism.= 0) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00984 Up.Conf.Int. 1 Found 1 168 TATAAAT 174 (Mism.= 0) TFBS AC: RSP00935//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: CT element /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00114 Up.Conf.Int. 1 Found 1 135 CCTCTCCTcCtCTC 122 (Mism.= 2) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00691 Up.Conf.Int. 1 Found 1 59 GATGATCTAA 68 (Mism.= 2) TFBS AC: RSP01037//OS: parsley, Petroselinum crispum /GENE: 4CL1/TFBS: FP56 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00016 Up.Conf.Int. 1 Found 1 178 TCCCCccTTTtCCCCT 193 (Mism.= 3) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00936 Up.Conf.Int. 1 Found 1 167 CTATAAATtC 176 (Mism.= 1) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00936 Up.Conf.Int. 1 Found 1 167 CTATAAATtC 176 (Mism.= 1) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 133 TCTCCTCCtC 124 (Mism.= 1) Totally 12 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0068..AC:X51909 S76887..OS:Oryza sativa..GENE:GOS9..PROD:GOS9..[ -200: +51]..CDS:+56..TSS:201 (+1) # Alternative TSS(s): +72 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.21 T - 0.28 C - 0.16 TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 125 AaCAAAGCAA 116 (Mism.= 1) TFBS AC: RSP00885//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: AACA motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 144 AACAAATCTTATC 132 (Mism.= 2) TFBS AC: RSP00943//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box III /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 42 TCATTcCACAA 32 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00464 Up.Conf.Int. 1 Found 1 171 CTATAAATA 179 (Mism.= 0) TFBS AC: RSP01596//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box III /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 32 TTGTGgAATGA 42 (Mism.= 1) TFBS AC: RSP01761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC13 (At1g32870)/TFBS: MRE (ANAC13) /BF: NSP1 Motifs on "-" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 35 aCAAACCTTtTT 24 (Mism.= 2) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "+" Strand: Mean Exp. Number 0.00674 Up.Conf.Int. 1 Found 1 55 GTTGCCTTCT 64 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00096 Up.Conf.Int. 1 Found 1 180 CTATTTATAG 171 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0069..AC:X56336..OS:Oryza sativa..GENE:RAmy3A..PROD:alpha-amylase..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.25 C - 0.28 TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 40 CATGCATG 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 47 CATGCATG 40 (Mism.= 0) TFBS AC: RSP00304//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: KN1/KIP BS /BF: KN1/KIP Motifs on "+" Strand: Mean Exp. Number 0.00637 Up.Conf.Int. 1 Found 1 49 TGACAGGT 56 (Mism.= 0) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "-" Strand: Mean Exp. Number 0.00637 Up.Conf.Int. 1 Found 1 78 cGCCGCCAT 70 (Mism.= 1) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 39 CCATGCATGC 48 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 48 GCATGCATGg 39 (Mism.= 1) TFBS AC: RSP01109//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rAT-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 22 ATAATTCT 15 (Mism.= 0) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 40 CATGCATG 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 47 CATGCATG 40 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01401//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BT2/TFBS: TAC1 BS /BF: TAC1 Motifs on "+" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 86 GACAGTGTTgC 96 (Mism.= 1) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 40 CATGCATG 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 47 CATGCATG 40 (Mism.= 0) TFBS AC: RSP02231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-consensus /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 78 CGCCGCCA 71 (Mism.= 0) TFBS AC: RSP02390//OS: maize (Zea mays) /GENE: GRMZM2G089958_T1/TFBS: LBD motif (GRMZM2G089958_T1) /BF: RTCS Motifs on "-" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 79 TCGCCGCC 72 (Mism.= 0) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 40 CATGCATG 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 47 CATGCATG 40 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 40 CATGCATG 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 47 CATGCATG 40 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 168 TATAAATA 175 (Mism.= 0) Totally 22 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0070..AC:X56338..OS:Oryza sativa..GENE:RAmy3C..PROD:alpha-amylase..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.26 C - 0.31 TFBS AC: RSP01176//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 3 /BF: Zmhox1a Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 98 AGtTGCTCCTA 88 (Mism.= 1) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 71 GCCGTTG 77 (Mism.= 0) TFBS AC: RSP02390//OS: maize (Zea mays) /GENE: GRMZM2G089958_T1/TFBS: LBD motif (GRMZM2G089958_T1) /BF: RTCS Motifs on "+" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 61 TCGCCGCC 68 (Mism.= 0) TFBS AC: RSP02774//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC092 BS /BF: ANAC092 Motifs on "+" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 74 GTTGCGTtT 82 (Mism.= 1) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0071..AC:X64770 S41992..OS:Oryza sativa..GENE:RSs1..PROD:sucrose synthase..[ -200: +51]..CDS+1222..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.32 C - 0.21 TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 92 CAGCTGA 98 (Mism.= 0) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "-" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 188 GAAGGACCAatAaAT 174 (Mism.= 3) TFBS AC: RSP00988//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP I /BF: E2F/DP Motifs on "-" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 54 CTCCCcCCAAAt 43 (Mism.= 2) TFBS AC: RSP02421//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 39-42 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 49 GGGGAGC 55 (Mism.= 0) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "+" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 111 CTAAACCAAt 120 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0072..AC:U26660..OS:Oryza sativa..GENE:Pdc1..PROD:pyruvate decarboxylase..[ -200: +51]..CDS:+127..TSS:201 (+1) # Alternative TSS(s): +5 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.18 C - 0.33 TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 158 TTCTCcCTCCT 168 (Mism.= 1) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 6 GTTGACGGTA 15 (Mism.= 1) TFBS AC: RSP01761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC13 (At1g32870)/TFBS: MRE (ANAC13) /BF: NSP1 Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 44 CCAAACCTTgTg 33 (Mism.= 2) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 24 TGCATGACG 32 (Mism.= 1) TFBS AC: RSP02831//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHSP70-4/TFBS: E2F2 BS /BF: E2F2 Motifs on "+" Strand: Mean Exp. Number 0.00467 Up.Conf.Int. 1 Found 1 140 GGCGCCAAA 148 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0073..AC:U83670..OS:Oryza sativa..GENE:OSHSP18.0..PROD:low molecular mass heat shock protein Oshsp18.0..[ -200: +51]..CDS:+120..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.22 T - 0.18 C - 0.27 TFBS AC: RSP00041//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (P) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 182 CAACAAttTATATC 169 (Mism.= 2) TFBS AC: RSP00320//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: Box I /BF: RNFG1 Motifs on "+" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 215 GcTCATCGATC 225 (Mism.= 1) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 227 TCGATCGATGA 217 (Mism.= 2) TFBS AC: RSP01961//OS: rice (Oryza sativa) /GENE: Oshsp17.3/TFBS: AZRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 31 GTCCTGGAC 23 (Mism.= 0) TFBS AC: RSP01966//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00904 Up.Conf.Int. 1 Found 1 130 GCAAAACT 137 (Mism.= 0) TFBS AC: RSP02114//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: HSE3 /BF: unknown HSF(s) Motifs on "+" Strand: Mean Exp. Number 0.00078 Up.Conf.Int. 1 Found 1 64 AGAACAATCCAGAAG 78 (Mism.= 2) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 95 CCGAAATTGG 86 (Mism.= 1) TFBS AC: RSP02514//OS: tomato (Solanum lycopersicum) /GENE: SlHsp26.1-P/TFBS: HSE (SlHsp26.1-P) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 235 ttGATCTTTCGA 224 (Mism.= 2) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0074..AC:X55736..OS:Petroselinum crispum..GENE:PR2..PROD:Pathogenesis-related protein..[ -200: +51]..CDS:+104..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.18 TFBS AC: RSP00211//OS: parsley, Petroselinum crispum /GENE: pr2/TFBS: HD-BS /BF: HD protein Motifs on "+" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 89 CTAATTGTTTA 99 (Mism.= 0) TFBS AC: RSP00346//OS: arabidopsis (Arabidopsis thaliana; transgenic lines) /GENE: synthetic oligonucleotides/TFBS: Box D /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 125 TACAATTCAAACATTGTTCAAACAAGGAACC 155 (Mism.= 0) TFBS AC: RSP00561//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 9/10 L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 139 AATgTTTG 132 -- 7-- 124 CAgGAG 119 (Mism.= 1/ 1) TFBS AC: RSP00631//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CII /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 85 TGTGcTaATTGTT 97 (Mism.= 2) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "-" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 160 AcTTAGGTTC 151 (Mism.= 1) TFBS AC: RSP01032//OS: arabidopsis (Arabidopsis thaliana) /GENE: SOC1/TFBS: CArG box /BF: FLC Motifs on "+" Strand: Mean Exp. Number 0.00665 Up.Conf.Int. 1 Found 1 204 CCAAATTAAG 213 (Mism.= 1) TFBS AC: RSP01443//OS: rice (Oryza sativa) /GENE: GAMyb/TFBS: GMS-1 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00258 Up.Conf.Int. 1 Found 1 113 ATAGgGcTcCTGTAC 127 (Mism.= 3) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 185 TTCAtTCATTT 195 (Mism.= 1) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 36 GGCCACT 30 (Mism.= 0) TFBS AC: RSP01978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(P) /BF: EIN3/EIL1 Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 41 ATGTATGT 48 (Mism.= 0) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 33 GGCCAAGA 40 (Mism.= 0) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 202 CACCAAAT 209 (Mism.= 0) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0075..AC:U46217..OS:Petroselinum crispum..GENE:CPRF1..PROD:CPRF1..[ -200: +51]..CDS+1317..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.25 C - 0.26 TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00672 Up.Conf.Int. 1 Found 1 123 GACgCGTAGA 132 (Mism.= 1) TFBS AC: RSP00070//OS: rice (Oryza sativa) /GENE: Osem/TFBS: ABRE motif A /BF: TRAB1 Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 154 TACGTGTC 147 (Mism.= 0) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 54 GCCAtGTCAG 63 (Mism.= 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 64 GCTGACATGG 55 (Mism.= 1) TFBS AC: RSP01122//OS: tomato (Lycopersicon esculentum) /GENE: Synthetic oligonucleotides/TFBS: RBSS5 /BF: ABZ1 Motifs on "-" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 158 TGCAtACGTGTCGa 145 (Mism.= 2) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 155 ATACGTGT 148 (Mism.= 0) TFBS AC: RSP01977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(D) /BF: EIN3/EIL1 Motifs on "+" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 154 ATGCATCT 161 (Mism.= 0) TFBS AC: RSP02012//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 55 GCCATGTGAa 46 (Mism.= 1) TFBS AC: RSP02317//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DREB2A/TFBS: ABRE /BF: AREB/ABF Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 147 GACACGTA 154 (Mism.= 0) TFBS AC: RSP02416//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 88-91 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 163 AGAGATGC 156 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 54 GCCAtGTCAGC 64 (Mism.= 1) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00220 Up.Conf.Int. 1 Found 1 156 CAtACGTGTC 147 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0076..AC:L41046..OS:Pisum sativum..GENE:EGL1..PROD:endo-1,4-beta-glucanase..[ -200: +51]..CDS:+93..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.35 C - 0.15 TFBS AC: RSP00299//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-2 /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 132 ATTtaCGCCAAT 143 (Mism.= 2) TFBS AC: RSP00960//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: MYB BS /BF: HvGAMYB Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 24 CAACTAAC 31 (Mism.= 0) TFBS AC: RSP01046//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: NON /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 19 tAATCCAAC 27 (Mism.= 1) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00993 Up.Conf.Int. 1 Found 1 23 CCAACTAACTat 34 (Mism.= 2) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0077..AC:M67990..OS:Petunia integrifolia..GENE:S1 protein..PROD:S1 protein..[ -200: +51]..CDS:+17..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.35 C - 0.16 TFBS AC: RSP00253//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (r) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 234 GATCCGCG 227 (Mism.= 1) TFBS AC: RSP00432//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB15 BS /BF: AtMYB15 Motifs on "-" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 140 CAACGGTtGGTGt 128 (Mism.= 2) TFBS AC: RSP00701//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (d) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 227 CGCGGATC 234 (Mism.= 1) TFBS AC: RSP00839//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: OCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 227 CGCGGATC 234 (Mism.= 0) TFBS AC: RSP00845//OS: maize (Zea mays) /GENE: H3C4/TFBS: OCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 227 CGCGGATC 234 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 4 TTTATAtTTTTTT 16 (Mism.= 1) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 127 CaCACCAACCg 137 (Mism.= 2) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 126 TCaCACCAACCG 137 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 126 TCaCACCAACCg 137 (Mism.= 2) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 126 TCaCACCaACCG 137 (Mism.= 2) TFBS AC: RSP01454//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-II /BF: PtMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 130 ACCAACC 136 (Mism.= 0) TFBS AC: RSP01692//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE J /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 209 TTCGATCA 202 (Mism.= 0) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 197 TTaCATgATCGAA 209 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 216 TTTCTTGTTCG 206 (Mism.= 2) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 216 TTTCTTGTTCG 206 (Mism.= 1) TFBS AC: RSP02204//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: MYCS (SmPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 216 TTTCTTGTTCG 206 (Mism.= 1) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 216 TTTCTTGTTCG 206 (Mism.= 2) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 216 TTTCTTGTTCG 206 (Mism.= 1) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 216 TTTCTTGTTCG 206 (Mism.= 2) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 130 ACCAACC 136 (Mism.= 0) TFBS AC: RSP02589//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 130 ACCAACC 136 (Mism.= 0) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 129 CACCAACC 136 (Mism.= 0) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 129 CACCAACC 136 (Mism.= 0) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 129 CACCAACC 136 (Mism.= 0) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 129 CACCAACC 136 (Mism.= 0) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 129 CACCAACC 136 (Mism.= 0) TFBS AC: RSP02904//OS: rice (Oryza sativa) /GENE: Os01t0182700/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 130 ACCAACC 136 (Mism.= 0) TFBS AC: RSP02906//OS: rice (Oryza sativa) /GENE: Os05t0499400/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 130 ACCAACC 136 (Mism.= 0) TFBS AC: RSP02907//OS: rice (Oryza sativa) /GENE: Os10t0474900/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 136 GGTTGGT 130 (Mism.= 0) TFBS AC: RSP02908//OS: rice (Oryza sativa) /GENE: Os11to4358/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 130 ACCAACC 136 (Mism.= 0) TFBS AC: RSP02917//OS: pear (Pyrus bretschneideri) /GENE: PbANR/TFBS: PbMYB9 BS /BF: PbMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 135 GTTGGTG 129 (Mism.= 0) Totally 31 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0078..AC:U07362..OS:Petunia hybrida..GENE:S1..PROD:S1 self-incompatibility ribonuclease precursor..[ -200: +51]..CDS:+26..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.32 C - 0.18 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00665 Up.Conf.Int. 1 Found 1 18 ACACGTGGa 10 (Mism.= 1) TFBS AC: RSP00014//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: MRE-core /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 121 aCTAACCTAaC 111 (Mism.= 2) TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 10 TCCACGTgTC 19 (Mism.= 1) TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 19 GACACGTgGA 10 (Mism.= 1) TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00192 Up.Conf.Int. 1 Found 1 27 tATTATTTTTAAA 39 (Mism.= 1) TFBS AC: RSP00188//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 10 TCcACGTGTC 19 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 19 GACACGTGGa 10 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 10 TCCACGTGTC 19 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 18 ACACGTG 12 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 19 GaCACGTGGA 10 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 10 TCCACGTGTC 19 (Mism.= 0) TFBS AC: RSP00969//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: Aux28B2 /BF: STGA1 Motifs on "-" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 250 CTGACGcCAg 241 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 19 gACACGTGgA 10 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 19 gACACGTGgA 10 (Mism.= 2) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "+" Strand: Mean Exp. Number 0.00709 Up.Conf.Int. 1 Found 1 110 AGTTAGGTTa 119 (Mism.= 1) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 13 ACGTGTC 19 (Mism.= 0) TFBS AC: RSP01069//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: GH3/TFBS: D1 /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 11 CCaCGTGTCTC 21 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 19 GACACGTGGA 10 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 11 CCACGTGt 18 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 18 aCACGTGG 11 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 18 ACACGTGG 11 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 10 TCCACGTgTC 19 (Mism.= 1) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 9 ATCCACGTGTCT 20 (Mism.= 0) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 10 TCCACGT 16 (Mism.= 0) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 69 TCCACTTcT 77 (Mism.= 1) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 10 tCCACGTGTC 19 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00520 Up.Conf.Int. 1 Found 1 10 tcCACGTGTC 19 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00520 Up.Conf.Int. 1 Found 1 19 GACACGTGga 10 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 11 CCACGTGtCt 20 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00538 Up.Conf.Int. 1 Found 1 10 tCCACGTGTC 19 (Mism.= 1) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 19 gACACGTGgA 10 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 19 GACACGTG 12 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 10 TCCACGTGtC 19 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00648 Up.Conf.Int. 1 Found 1 18 ACACGTGG 11 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 10 tCCACGTGTc 19 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 19 GACACGTGGA 10 (Mism.= 0) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 10 tcCACGTGTC 19 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 10 TcCACGTGTc 19 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 19 GACACGTGGA 10 (Mism.= 0) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 19 GACACGTGGA 10 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 12 CACGTGTC 19 (Mism.= 0) TFBS AC: RSP02691//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: TCTAA box 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 225 TCTAAAGT 218 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 13 ACGTGTC 19 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 19 GACACGTGga 10 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 19 gACACGTGGa 10 (Mism.= 2) Totally 45 motifs of 43 different TFBSs have been found ____________________________________________________________ >PLPR0079..AC:U25536 S58282..OS:Petunia hybrida..GENE:Adh2..PROD:alcohol dehydrogenase-2..[ -200: +51]..CDS:+104..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.27 C - 0.22 TFBS AC: RSP00358//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 65 CAACTCCT 58 (Mism.= 1) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 31 TTTaATTaTGTGATTT 16 (Mism.= 2) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00592 Up.Conf.Int. 1 Found 1 158 ATCCAaATTTcAGGT 172 (Mism.= 2) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00938 Up.Conf.Int. 1 Found 1 97 CAAAACCAg 89 (Mism.= 1) TFBS AC: RSP02794//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P8 /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 160 GaTTAAAAAC 151 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0080..AC:M92095..OS:Phaseolus vulgaris..GENE:gln-gamma..PROD:glutamine synthetase..[ -200: +51]..CDS:+78..TSS:201 (+1) # Alternative TSS(s): +5 +7 +9 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.32 C - 0.14 TFBS AC: RSP00473//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS3 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00078 Up.Conf.Int. 1 Found 1 79 CATGTGcGTaTTC 91 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00335 Up.Conf.Int. 1 Found 1 218 AGAAAGAGA 226 (Mism.= 0) TFBS AC: RSP01981//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 142 GTTTTGGAA 150 (Mism.= 0) Totally 3 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0081..AC:L36648..OS:Solanum tuberosum..GENE:ADP-glucose pyrophosphorylase small subunit..PROD:ADP-glucose pyrophosphorylase small subunit..[ -200: +51]..CDS:+66..TSS:201 (+1) |Taxon: Dicot |Prom Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.10 T - 0.25 C - 0.25 TFBS AC: RSP00207//OS: rice (Oryza sativa), Oryza sativa /GENE: PHYA/TFBS: GTE /BF: GT-2 Motifs on "+" Strand: Mean Exp. Number 0.00592 Up.Conf.Int. 1 Found 1 188 GCtGTAATT 196 (Mism.= 1) TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "-" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 97 TACACTTTTtG 87 (Mism.= 1) TFBS AC: RSP00288//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif VI /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00837 Up.Conf.Int. 1 Found 1 111 TGGTCC 116 (Mism.= 0) TFBS AC: RSP00496//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: "2 TGAGCT" element /BF: ASF-1 (tobacco); OCSTF; Motifs on "+" Strand: Mean Exp. Number 0.00674 Up.Conf.Int. 1 Found 1 1 TaAGCT 6 -- 9-- 16 AaGTCA 21 (Mism.= 1/ 1) TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 191 CAGCTGA 185 (Mism.= 0) TFBS AC: RSP00880//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M1 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 158 CAAgGGtAAC 149 (Mism.= 2) TFBS AC: RSP00894//OS: Solanum melongena /GENE: SmCP/TFBS: ERE 2 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 193 AATTCAAG 200 (Mism.= 0) TFBS AC: RSP00941//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box I /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 24 TTTCAATC 31 (Mism.= 0) TFBS AC: RSP01273//OS: potato (Solanum tuberosum) /GENE: Pin-II/TFBS: Dist-PE /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 81 GAGGGTATTTTgGggA 66 (Mism.= 3) TFBS AC: RSP01594//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 31 GATTGAAA 24 (Mism.= 0) TFBS AC: RSP01621//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E4 /BF: GmDof4; GmDof22 Motifs on "-" Strand: Mean Exp. Number 0.00872 Up.Conf.Int. 1 Found 1 97 TACACTTTTt 88 (Mism.= 1) TFBS AC: RSP01790//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNAT2/TFBS: AS1-AS2 BS II (KNAT2 B) /BF: AS1-AS2 Motifs on "+" Strand: Mean Exp. Number 0.00948 Up.Conf.Int. 1 Found 1 240 cAGTTGATA 248 (Mism.= 1) TFBS AC: RSP02036//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ORA59 (At1g06160)/TFBS: STY1 BS (ORA59) /BF: STY1 Motifs on "+" Strand: Mean Exp. Number 0.00959 Up.Conf.Int. 1 Found 1 208 aCACTCTACcA 218 (Mism.= 2) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 26 aAATATGACTtT 15 (Mism.= 2) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0082..AC:L16450..OS:Solanum tuberosum..GENE:multicystatin..PROD:multicystatin..[ -200: +51]..CDS:+51..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.41 C - 0.14 TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "+" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 180 AGTTAtGTTC 189 (Mism.= 1) TFBS AC: RSP01982//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 206 TGTGATG 200 (Mism.= 0) TFBS AC: RSP02140//OS: maize (Zea mays) /GENE: F5H/TFBS: MBS-1 /BF: ZmMYB31 Motifs on "-" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 34 TCCACC 29 (Mism.= 0) TFBS AC: RSP02519//OS: rice (Oryza sativa, japonica/indica) /GENE: Gn1a/OsCKX2/TFBS: DBS /BF: DST Motifs on "+" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 151 TGCTAGCCtTT 161 (Mism.= 1) TFBS AC: RSP02913//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 154 aGCACGTTAT 145 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0083..AC:M62755..OS:Solanum tuberosum..GENE:St4C1-1..PROD:4-coumarate--CoA ligase..[ -200: +51]..CDS:+81..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.32 C - 0.26 TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 154 CACAaGTC 147 (Mism.= 1) TFBS AC: RSP00286//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 2 19 TCTCACCaACC 29 (Mism.= 1) 133 TtTCACCTACC 143 (Mism.= 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 85 GTTTCCATG 93 (Mism.= 0) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 132 CTTTCaccTACCACA 146 (Mism.= 3) TFBS AC: RSP00888//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (2) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00849 Up.Conf.Int. 1 Found 1 216 AAAAATCTA 224 (Mism.= 0) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 20 CTCACCAACCa 30 (Mism.= 1) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 66 CCTTTTTGGG 57 (Mism.= 1) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 19 TCTCACCAACCa 30 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00194 Up.Conf.Int. 1 Found 1 19 TCTCACCAACCa 30 (Mism.= 1) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00475 Up.Conf.Int. 1 Found 2 19 TCTCACCaACCA 30 (Mism.= 1) 133 TtTCACCTACCA 144 (Mism.= 1) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 66 CCTTTTTGGG 57 (Mism.= 1) TFBS AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00186 Up.Conf.Int. 1 Found 1 66 CCTTTTTGGG 57 (Mism.= 0) TFBS AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00479 Up.Conf.Int. 1 Found 1 66 CCTTTTTGGGG 56 (Mism.= 2) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 86 TTTCCATGaAGT 97 (Mism.= 1) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 86 TTTCCATGaAGT 97 (Mism.= 1) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 86 TTTCCATGaAGT 97 (Mism.= 1) TFBS AC: RSP01390//OS: potato (Solanum tuberosum) /GENE: 4CL-1/TFBS: 4cl-CMA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 97 TTGCCCCTGAACAACCCTAAATACCCATAAACTCCCTTTCACCTACCAC 145 (Mism.= 0) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 245 CTGAAAAGCTA 235 (Mism.= 2) TFBS AC: RSP01754//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmMYB92 BS3 /BF: GmMYB92 Motifs on "+" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 2 19 TCTCACCaACC 29 (Mism.= 1) 133 TtTCACCTACC 143 (Mism.= 1) TFBS AC: RSP02138//OS: maize (Zea mays) /GENE: ZmCOMT/TFBS: AC-II /BF: ZmMYB31 Motifs on "+" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 20 CTCACCAACCACa 32 (Mism.= 1) TFBS AC: RSP02393//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VDD/TFBS: CArG1 /BF: STK-SEP3 Motifs on "+" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 57 CCCAAAAAGG 66 (Mism.= 0) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "-" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 70 tTTTCCTTTT 61 (Mism.= 1) Totally 25 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0084..AC:X57082..OS:Pisum sativum..GENE:Cab II..PROD:chlorophyll a/..[ -200: +51]..CDS:+74..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.25 C - 0.26 TFBS AC: RSP00201//OS: maize (Zea mays) /GENE: rab17/TFBS: GRA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 155 CACTGGCCaCtC 166 (Mism.= 2) TFBS AC: RSP00280//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: O2-box /BF: Opaque-1, b-ZIP transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00706 Up.Conf.Int. 1 Found 1 80 TCCAtGTAGA 89 (Mism.= 1) TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "+" Strand: Mean Exp. Number 0.00197 Up.Conf.Int. 1 Found 1 29 CACATGGCACa 39 (Mism.= 1) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00386 Up.Conf.Int. 1 Found 1 36 GCCAtGTGGA 27 (Mism.= 1) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 37 TGCCAtGTGGAt 26 (Mism.= 2) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 112 GCTGACTTGT 121 (Mism.= 2) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "+" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 157 CTGGcCaCTCC 167 (Mism.= 2) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 159 GGCCACT 165 (Mism.= 0) TFBS AC: RSP02000//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 3 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 121 AcAAGTCAgCAA 110 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0085..AC:AJ222771..OS:Pisum sativum..GENE:gdcT..PROD:T protein..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): +32 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.13 T - 0.42 C - 0.19 TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 103 CCACCAACtCCC 114 (Mism.= 1) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "+" Strand: Mean Exp. Number 0.00545 Up.Conf.Int. 1 Found 1 157 tATTATTTTTATT 169 (Mism.= 1) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "-" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 155 aTTAAtaTATTTATTT 140 (Mism.= 3) TFBS AC: RSP00230//OS: parsley, Petroselinum crispum /GENE: CHS-1/TFBS: MRECHS /BF: PcMYB1; (Myb1 from P. crispum) Motifs on "-" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 86 AACtTAACCT 77 (Mism.= 1) TFBS AC: RSP00358//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 107 CAACTCCC 114 (Mism.= 0) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 71 AAGATGAGGTTaagT 85 (Mism.= 3) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 152 AATATaTTTATT 141 (Mism.= 1) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 54 CAAATGAAGA 45 (Mism.= 0) TFBS AC: RSP01228//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 101 ATcCACCAACTCCC 114 (Mism.= 1) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 155 ATTaATATATTTA 143 (Mism.= 1) TFBS AC: RSP01602//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 89 TCTCAATC 96 (Mism.= 0) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 229 TCTTGTCTCT 238 (Mism.= 0) TFBS AC: RSP02917//OS: pear (Pyrus bretschneideri) /GENE: PbANR/TFBS: PbMYB9 BS /BF: PbMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 110 GTTGGTG 104 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0086..AC:X63060..OS:Pisum sativum..GENE:lpcr..PROD:protochlorophyllide reductase..[ -200: +51]..CDS:+41..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.10 T - 0.38 C - 0.19 TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "-" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 111 GCCACaTC 104 (Mism.= 1) TFBS AC: RSP00596//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: box II EE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00666 Up.Conf.Int. 1 Found 1 111 GCCACA 106 (Mism.= 0) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00644 Up.Conf.Int. 1 Found 1 12 CACagACTTC 3 (Mism.= 2) TFBS AC: RSP01039//OS: parsley, Petroselinum crispum /GENE: Icy/TFBS: DOF BS1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 99 GAAAGG 104 (Mism.= 0) TFBS AC: RSP01053//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GATA-core /BF: HvMCB1 Motifs on "-" Strand: Mean Exp. Number 0.00763 Up.Conf.Int. 1 Found 1 139 GATAAGATA 131 (Mism.= 0) TFBS AC: RSP01068//OS: barley (Hordeum vulgare) /GENE: Synthetic OLIGOs/TFBS: HvH21 BS /BF: HvH21 Motifs on "+" Strand: Mean Exp. Number 0.00557 Up.Conf.Int. 1 Found 1 9 TGTGACACT 17 (Mism.= 0) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 1 100 TCaAACCAaCCA 89 (Mism.= 2) TFBS AC: RSP01103//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: AC1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 72 AAACCTCA 79 (Mism.= 0) TFBS AC: RSP01136//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: TGTCACA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 15 TGTCACA 9 (Mism.= 0) TFBS AC: RSP01229//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 4 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00019 Up.Conf.Int. 1 Found 1 101 tTCAAACCAACCAA 88 (Mism.= 1) TFBS AC: RSP01454//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-II /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 96 ACCAACC 90 (Mism.= 0) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 92 ACCAATAAG 84 (Mism.= 1) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 92 ACCAATAAG 84 (Mism.= 1) TFBS AC: RSP01761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC13 (At1g32870)/TFBS: MRE (ANAC13) /BF: NSP1 Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 78 CaAAACCTTaTT 89 (Mism.= 2) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 104 gATGTGGCA 112 (Mism.= 1) TFBS AC: RSP02095//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE1 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 147 TTCATGAA 154 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 154 TTCATGAA 147 (Mism.= 0) TFBS AC: RSP02186//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp29/V /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 62 TaTGAAaTCCAAA 74 (Mism.= 2) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 96 ACCAACC 90 (Mism.= 0) TFBS AC: RSP02589//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 96 ACCAACC 90 (Mism.= 0) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 97 aACCAACC 90 (Mism.= 1) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 97 aACCAACC 90 (Mism.= 1) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 97 aACCAACC 90 (Mism.= 1) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 97 aACCAACC 90 (Mism.= 1) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 97 aACCAACC 90 (Mism.= 1) TFBS AC: RSP02904//OS: rice (Oryza sativa) /GENE: Os01t0182700/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 96 ACCAACC 90 (Mism.= 0) TFBS AC: RSP02906//OS: rice (Oryza sativa) /GENE: Os05t0499400/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 96 ACCAACC 90 (Mism.= 0) TFBS AC: RSP02907//OS: rice (Oryza sativa) /GENE: Os10t0474900/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 90 GGTTGGT 96 (Mism.= 0) TFBS AC: RSP02908//OS: rice (Oryza sativa) /GENE: Os11to4358/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 96 ACCAACC 90 (Mism.= 0) TFBS AC: RSP02944//OS: maize (Zea mays) /GENE: RLK/TFBS: RS2 BS /BF: RS2 Motifs on "-" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 99 CAAACCaACC 90 (Mism.= 1) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00848 Up.Conf.Int. 1 Found 1 96 ACCAACCA 89 (Mism.= 0) TFBS AC: RSP02978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLC/TFBS: ABI4 BS /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 112 TGCCACAt 105 (Mism.= 1) Totally 32 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0087..AC:U28924..OS:Pisum sativum..GENE:GS3B..PROD:cytosolic glutamine synthetase..[ -200: +51]..CDS:+90..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.07 T - 0.37 C - 0.18 TFBS AC: RSP00536//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: LRE-TATA AA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 3 GTGATAA 9 (Mism.= 0) TFBS AC: RSP00756//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif B /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 186 CTCACACT 193 (Mism.= 0) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00872 Up.Conf.Int. 1 Found 1 104 AGAATCTT 97 (Mism.= 0) TFBS AC: RSP01182//OS: pea (Pisum sativum) /GENE: GS3A/TFBS: GS3A-F1 BS /BF: GS3A-F1 Motifs on "+" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 80 TTGATCTAGTAGATAAA 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 96 TTtATCTAcTAGATcAA 80 (Mism.= 3) TFBS AC: RSP01250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtpC/TFBS: CBF-C BS /BF: CBF-C Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 71 AAAATTCAAT 80 (Mism.= 0) TFBS AC: RSP01868//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: GARP BS 1 /BF: GARP transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00336 Up.Conf.Int. 1 Found 1 104 AGAATCTTT 96 (Mism.= 0) TFBS AC: RSP01909//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 68 TTCAAaaTTCAATT 81 (Mism.= 2) TFBS AC: RSP01948//OS: tobacco (Nicotiana tabacum) /GENE: UP9C/TFBS: UPE-box (TV2) /BF: NtEIL2; AtSLIM1 Motifs on "-" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 182 TGAACCT 176 (Mism.= 0) TFBS AC: RSP02949//OS: maize (Zea mays) /GENE: OPT/TFBS: GLK2 BS /BF: GLK2 Motifs on "-" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 105 GAGAATCT 98 (Mism.= 0) Totally 10 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0088..AC:U34754..OS:Phaseolus vulgaris..GENE:cellulase..PROD:cellulase..[ -200: +51]..CDS:+38..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.14 T - 0.34 C - 0.27 TFBS AC: RSP00399//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: ATF /BF: AP1-like leucine zipper factor Motifs on "+" Strand: Mean Exp. Number 0.00193 Up.Conf.Int. 1 Found 1 93 GCACGTCA 100 (Mism.= 0) TFBS AC: RSP00681//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 4 /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 74 TAATTAATC 66 (Mism.= 0) TFBS AC: RSP00709//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: I-box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 17 TAATTATTT 9 (Mism.= 0) TFBS AC: RSP00710//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: AT1-box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00573 Up.Conf.Int. 1 Found 1 17 TAATTATTTaTTt 5 (Mism.= 2) TFBS AC: RSP00884//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: AZM /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00193 Up.Conf.Int. 1 Found 1 93 GCACGTCA 100 (Mism.= 0) TFBS AC: RSP01008//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 3 (AC-III) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 150 ACCTAAC 144 (Mism.= 0) TFBS AC: RSP01088//OS: sunflower (Helianthus annuus) /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/TFBS: CuRE 2 /BF: CRR1 Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 241 GGGTACCA 248 (Mism.= 0) TFBS AC: RSP01235//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: 24 bp Z-BAC+ /BF: TGA-type basic Leu zipper (bZIP) factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 85 TCATTACTGCACGTCACTCTATCT 108 (Mism.= 0) TFBS AC: RSP01236//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: 10 bp Z-BAC- /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 1 79 TCATAGTCAT 88 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 169 CTCTATATAT 178 (Mism.= 0) TFBS AC: RSP01455//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-III /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 150 ACCTAAC 144 (Mism.= 0) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 102 AGTGACGTGC 93 (Mism.= 0) TFBS AC: RSP02019//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBb /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00918 Up.Conf.Int. 1 Found 1 144 GTTAGGTA 151 (Mism.= 0) TFBS AC: RSP02095//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE1 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 125 TTCATGAA 132 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 132 TTCATGAA 125 (Mism.= 0) TFBS AC: RSP02253//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Ep5C/TFBS: MBSII /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 144 GTTAGGT 150 (Mism.= 0) TFBS AC: RSP02333//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 7 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 150 ACCTAAC 144 (Mism.= 0) TFBS AC: RSP02693//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: GGAA box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 1 196 ACTCGGAAGctA 185 (Mism.= 2) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00192 Up.Conf.Int. 1 Found 1 92 TGCACGTCaC 101 (Mism.= 1) TFBS AC: RSP02747//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 1 (IRX8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 151 TACCTAAC 144 (Mism.= 0) TFBS AC: RSP02813//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 2 (EgCAD) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00918 Up.Conf.Int. 1 Found 1 144 GTTAGGTA 151 (Mism.= 0) TFBS AC: RSP02905//OS: rice (Oryza sativa) /GENE: Os02t0467500/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 150 ACCTAAC 144 (Mism.= 0) TFBS AC: RSP02922//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00714 Up.Conf.Int. 1 Found 1 214 aTCTCGTGaT 205 (Mism.= 2) TFBS AC: RSP02923//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "+" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 205 aTCACGAGAT 214 (Mism.= 1) Totally 24 motifs of 23 different TFBSs have been found ____________________________________________________________ >PLPR0089..AC:U94748..OS:Petunia hybrida..GENE:An11..PROD:AN11..[ -200: +51]..CDS:+63..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.07 T - 0.29 C - 0.28 TFBS AC: RSP00652//OS: maize (Zea mays) /GENE: a1/TFBS: C1 DBS /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 148 CCGGTAGT 141 (Mism.= 0) TFBS AC: RSP00894//OS: Solanum melongena /GENE: SmCP/TFBS: ERE 2 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 32 AATTCAAG 39 (Mism.= 0) TFBS AC: RSP01472//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box-I /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 81 gCTAaCTACCC 71 (Mism.= 2) TFBS AC: RSP01528//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 81 gCTAaCTACCC 71 (Mism.= 2) TFBS AC: RSP02129//OS: rice (Oryza sativa) /GENE: OsAns/TFBS: OsC1-MYB BS /BF: OsC1 Motifs on "-" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 78 AaCTACCCTgT 68 (Mism.= 2) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0090..AC:D21159..OS:Oryza sativa..GENE:Osg4B..PROD:rice anther specific protein..[ -200: +51]..CDS:+80..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.26 T - 0.14 C - 0.35 TFBS AC: RSP00024//OS: pea, Pisum sativum /GENE: petE/TFBS: A/T-rich BOX3 /BF: PCF1 Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 235 TAaTATTT 242 (Mism.= 1) TFBS AC: RSP00164//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 235 TAATAT 240 (Mism.= 0) TFBS AC: RSP00206//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00163 Up.Conf.Int. 1 Found 1 229 GTaAGGTAATAT 240 (Mism.= 1) TFBS AC: RSP00430//OS: barley (Hordeum vulgare) /GENE: Hor2 gene/TFBS: GSN; hor1-box; /BF: BLZ1; bZIP transcription factor; Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 122 GTGAGcCAT 130 (Mism.= 1) TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 208 AGCAAAGCAg 217 (Mism.= 1) TFBS AC: RSP00454//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif e/f /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 70 TACcgAACATG 60 (Mism.= 2) TFBS AC: RSP00871//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 121 GGTGAGcCAT 130 (Mism.= 1) TFBS AC: RSP00883//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: GZM /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 122 GTGAGcCAT 130 (Mism.= 1) TFBS AC: RSP00953//OS: arabidopsis (Arabidopsis thaliana) /GENE: ATHB6/TFBS: ATHB6 BS /BF: ATHB6 Motifs on "-" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 243 CAAaTATTA 235 (Mism.= 1) TFBS AC: RSP00970//OS: soybean (Glycine max) /GENE: Auxin-regulated genes/TFBS: CRE (G/A) /BF: STF1; STF2; STGA1; Motifs on "+" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 54 GTGACGCAT 62 (Mism.= 1) TFBS AC: RSP01047//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: A/T-rich HEX /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 235 TAATAT 240 (Mism.= 0) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 182 CgCTCCTCaCCGTCa 196 (Mism.= 3) TFBS AC: RSP02090//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 139 gAGCTTTGCAt 129 (Mism.= 2) TFBS AC: RSP02542//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN2/TFBS: WUS BS 2 (KAN2) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 233 gGTAATAT 240 (Mism.= 1) TFBS AC: RSP02750//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX14/TFBS: MYB46 BS (IRX14) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 70 TACCgAAC 63 (Mism.= 1) TFBS AC: RSP02761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS1 (MYB58) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 70 TACCgAAC 63 (Mism.= 1) TFBS AC: RSP02896//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 69 ACCgAACAT 61 (Mism.= 1) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0091..AC:S45406..OS:Nicotiana tabacum..GENE:TobRB7..PROD:root-specific gene regulator..[ -200: +51]..CDS:+77..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.31 C - 0.18 TFBS AC: RSP00584//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: TSS MM /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 217 AACCCTCTTAAGA 229 (Mism.= 2) TFBS AC: RSP00704//OS: tomato (Lycopersicon esculentum), Lycopersicon exculentum /GENE: Chi2;1/TFBS: LeCBP BS /BF: LeCBP Motifs on "-" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 118 AAAGAGGAaAaAATTAAaAa 99 (Mism.= 4) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 75 CAAAACCAA 83 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 99 TTTtTAATTTTTT 111 (Mism.= 1) TFBS AC: RSP01032//OS: arabidopsis (Arabidopsis thaliana) /GENE: SOC1/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 251 CCAAAAGAAG 242 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 242 CTTcTTTTGG 251 (Mism.= 1) TFBS AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/TFBS: 39-bp element /BF: SIP1 Motifs on "-" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 124 ACAATaAAAGA 114 (Mism.= 1) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00837 Up.Conf.Int. 1 Found 1 242 CTTcTTTTGG 251 (Mism.= 1) TFBS AC: RSP02415//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 45-48 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 18 GCGGTGG 24 (Mism.= 0) TFBS AC: RSP02446//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS1 /BF: HB05; HB12 Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 33 CAATCATTT 41 (Mism.= 0) TFBS AC: RSP02955//OS: maize (Zea mays) /GENE: FIP1/TFBS: WRI1 BS /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 31 CGCCGtCCC 23 (Mism.= 1) TFBS AC: RSP02977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: O-box (oligo3) /BF: ORA47 Motifs on "-" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 1 77 TTGCCGACCAtg 66 (Mism.= 2) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0092..AC:S70188..OS:Arabidopsis thaliana..GENE:SAUR-AC1..PROD:small auxin up RNA..[ -200: +51]..CDS:+83..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.31 C - 0.21 TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "-" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 102 CACATGGCttT 92 (Mism.= 2) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 79 CtAAACCAA 71 (Mism.= 1) TFBS AC: RSP00939//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 109 TACaGaGCACAT 98 (Mism.= 2) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "+" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 132 AtACTTaATCATTT 145 (Mism.= 2) TFBS AC: RSP02011//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_1) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 104 AGCACATGgC 95 (Mism.= 1) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 79 CTAAACCAAg 70 (Mism.= 1) TFBS AC: RSP02963//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box E /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 95 GCCATgTGCT 104 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0093..AC:S75487..OS:Lycopersicon esculentum..GENE:adh3a..PROD:alcohol dehydrogenase ADH..[ -200: +51]..CDS:+59..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.32 C - 0.12 TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 74 TACAtTTTTGG 64 (Mism.= 1) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 2 AGTTgGGTTC 11 (Mism.= 1) Totally 2 motifs of 2 different TFBSs have been found ____________________________________________________________ >PLPR0094..AC:S77076..OS:Arabidopsis thaliana..GENE:beta-amylase..PROD:beta-amylase..[ -200: +51]..CDS:+110..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.24 C - 0.22 TFBS AC: RSP00102//OS: cucumber (Cucumis sativus) /GENE: hpr-A/TFBS: as-1 LM /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 18 AAATGACGAAAgaGg 32 (Mism.= 3) TFBS AC: RSP00544//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 15/GT-1 N1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 70 ATGActTTATTGC 58 (Mism.= 2) TFBS AC: RSP01174//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 1 /BF: Zmhox1a Motifs on "-" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 32 CCTCTttCGTC 22 (Mism.= 2) TFBS AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/TFBS: NIT2 BS II /BF: NIT2 Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 213 TGAAGCTC 206 (Mism.= 0) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 88 CCATTTGAGG 79 (Mism.= 1) TFBS AC: RSP02923//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00640 Up.Conf.Int. 1 Found 1 184 cTCACGAGcT 175 (Mism.= 2) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0095..AC:X72928..OS:Solanum commersonii..GENE:OSML13..PROD:osmotin-like protein..[ -200: +51]..CDS:+41..TSS:201 (+1) # Alternative TSS(s): +6 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.32 C - 0.18 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 153 cAAaAGCCGCC 163 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 44 GGCGGC 49 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 163 GGCGGC 158 (Mism.= 0) 68 GGCGGC 63 (Mism.= 0) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00923//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: Le-osmotin/TFBS: GCC-box/ERE /BF: LeERF1, LeERF2, LeERF3, LeERF4 Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 154 AAAAGCCGCCACAC 167 (Mism.= 0) TFBS AC: RSP00928//OS: hot pepper (Capsicum annuum) /GENE: GCC box-containing genes/TFBS: GCC box /BF: CaERFLP1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 148 AGTttCAAAAGCCGCCACACCCCT 171 (Mism.= 2) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 157 AGCCGCCAc 165 (Mism.= 1) TFBS AC: RSP01320//OS: tobacco (Nicotiana tabacum) /GENE: PRB-1b/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP01321//OS: tobacco (Nicotiana tabacum) /GENE: CHN17/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP01322//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP01323//OS: tobacco (Nicotiana tabacum) /GENE: GLN2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00013 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP01324//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn1/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP01325//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP01341//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AtEBP Motifs on "+" Strand: Mean Exp. Number 0.00092 Up.Conf.Int. 1 Found 1 153 cAAaAGCCGCC 163 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01400//OS: Jatropha curcas /GENE: Synthetic oligonucleotides/TFBS: GCC box (ERF BS) /BF: JcERF Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 148 AGTttCAAAAGCCGCCACACCCCT 171 (Mism.= 2) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01687//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE E /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 161 CGGCTTT 155 (Mism.= 0) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-consensus /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 157 AGCCGCCA 164 (Mism.= 0) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP02305//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS2 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00898 Up.Conf.Int. 1 Found 1 200 ATtgTGACAAAT 189 (Mism.= 2) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00898 Up.Conf.Int. 1 Found 1 200 ATTgTGACAAAT 189 (Mism.= 1) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 2 62 AGCCGCC 68 (Mism.= 0) 157 AGCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 2 61 GAGCCGCCtC 70 (Mism.= 1) 156 aAGCCGCCAC 165 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 51 GAGCCGCCta 42 (Mism.= 2) TFBS AC: RSP02650//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EBE /BF: ERF (At1g04370, At2g31230); DREB (At3g11020, At4g13620) Motifs on "-" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 54 TAAGAGCCGCC 44 (Mism.= 0) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 2 63 GCCGCC 68 (Mism.= 0) 158 GCCGCC 163 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP02959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box A /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 111 gTCAAGTGTG 120 (Mism.= 1) Totally 86 motifs of 40 different TFBSs have been found ____________________________________________________________ >PLPR0096..AC:AJ271546..OS:Scenedesmus obliquus..GENE:hydA..PROD:Fe-hydrogenase..[ -200: +51]..CDS:+139..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.23 T - 0.25 C - 0.26 TFBS AC: RSP00122//OS: pea, Pisum sativum /GENE: AS1/TFBS: Box C /BF: unknown nuclear protein Motifs on "-" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 191 CTCCCAC 185 (Mism.= 0) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00305 Up.Conf.Int. 1 Found 1 25 AGTgTgGATCCCTTa 11 (Mism.= 3) TFBS AC: RSP01789//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNAT2/TFBS: AS1-AS2 BS II (KNAT2 A) /BF: AS1-AS2 Motifs on "-" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 114 TCGTTGACT 106 (Mism.= 0) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "-" Strand: Mean Exp. Number 0.00773 Up.Conf.Int. 1 Found 1 159 GCACGTaGAG 150 (Mism.= 1) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "-" Strand: Mean Exp. Number 0.00773 Up.Conf.Int. 1 Found 1 159 GCACGTaGAG 150 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0097..AC:X64351..OS:Scenedesmus obliquus..GENE:ENR..PROD:ferredoxin NADP+ oxidoreductase..[ -200: +51]..CDS:+240..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.49 G - 0.15 T - 0.22 C - 0.14 TFBS AC: RSP00319//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: GATA motif /BF: R-GATA, GATA motif binding factor Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 114 CAGtAGATA 106 (Mism.= 1) TFBS AC: RSP00402//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: AP1 /BF: AP1-like leucine zipper factor Motifs on "+" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 204 TTAGTCT 210 (Mism.= 0) TFBS AC: RSP00520//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E5 /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 223 AAAACAcaTGaAAAaAAAAA 242 (Mism.= 4) TFBS AC: RSP00577//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: AT-rich FF2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 117 AAccAgTAGATATTcATTAA 98 (Mism.= 4) TFBS AC: RSP01045//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box E /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 185 GGACCCATgAAt 196 (Mism.= 2) TFBS AC: RSP01107//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rGC /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 195 TTCATGGGTCCCTtTt 180 (Mism.= 2) TFBS AC: RSP01699//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At2g21640/UPOX/TFBS: CARE B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00857 Up.Conf.Int. 1 Found 1 46 ACGTGAT 40 (Mism.= 0) TFBS AC: RSP02021//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: BSa/b /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 112 CTGGTT 117 (Mism.= 0) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 164 CCATTGAAGG 173 (Mism.= 1) TFBS AC: RSP02540//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN2/TFBS: WUS BS 1 (KAN2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00639 Up.Conf.Int. 1 Found 1 102 ATTAATCG 95 (Mism.= 0) TFBS AC: RSP02619//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE2 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 47 AACGTGAt 40 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0098..AC:J05209..OS:Glycine max..GENE:SbPRP3..PROD:cell wall protein..[ -200: +51]..CDS:+33..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.27 C - 0.25 TFBS AC: RSP00580//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: LRE-TATA AA /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 116 TTgTCATTgtATTATA 101 (Mism.= 3) TFBS AC: RSP00635//OS: soybean (Glycine max) /GENE: SAUR 15A/TFBS: NDE Box 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 56 GGTCCCAT 49 (Mism.= 0) TFBS AC: RSP00756//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif B /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 198 CTCACACT 191 (Mism.= 0) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 41 tAAATGAAGA 32 (Mism.= 1) TFBS AC: RSP01165//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: HSE(2) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 90 GGTGTGGAttATTC 77 (Mism.= 2) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 61 AGTcTCaATCCCTTT 75 (Mism.= 2) TFBS AC: RSP01602//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 63 TCTCAATC 70 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 144 TCTCAATC 137 (Mism.= 0) TFBS AC: RSP02775//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC092-FL BS /BF: ANAC092-FL Motifs on "+" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 16 CAGaTTGCGT 25 (Mism.= 1) TFBS AC: RSP02875//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS2 /BF: GbWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 118 GcAAGTCATTaA 129 (Mism.= 2) Totally 10 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0099..AC:U42336..OS:Triticum aestivum..GENE:TA-ACS2..PROD:ACC synthase..[ -200: +51]..CDS:+207..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.18 G - 0.20 T - 0.22 C - 0.39 TFBS AC: RSP00163//OS: soybean (Glycine max) /GENE: synthetic oligonucleotides/TFBS: DR5 /BF: ARF1 Motifs on "+" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 77 CCTTTTtTCTC 87 (Mism.= 1) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 84 AAAAAAGgGA 75 (Mism.= 1) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 168 TATAAAT 174 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 92 AGAGAGAGA 84 (Mism.= 0) TFBS AC: RSP00887//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 161 AcGAATCTA 169 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 95 GcGAGAGAGAGAaAaAA 79 (Mism.= 3) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 167 CTATAAATAg 176 (Mism.= 1) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 167 CTATAAATAg 176 (Mism.= 1) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 167 CTATAAATAG 176 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 176 CTATTTATAG 167 (Mism.= 0) TFBS AC: RSP02173//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp7/II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 53 GCGcGCATATGC 64 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 176 CtATTTATAG 167 (Mism.= 1) TFBS AC: RSP02210//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: P1BS (SmPT5) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 57 GCATATGC 64 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 64 GCATATGC 57 (Mism.= 0) TFBS AC: RSP02213//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: P1BS (NtPT5) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 57 GCATATGC 64 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 64 GCATATGC 57 (Mism.= 0) TFBS AC: RSP02732//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS1/TFBS: P1BS /BF: PHR1 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 56 CGCATATGCC 65 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 168 TATAAATA 175 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 167 CTATAAATaG 176 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00147 Up.Conf.Int. 1 Found 1 176 CTATTTATAG 167 (Mism.= 0) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "-" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 1 42 AtAAACTTCC 33 (Mism.= 1) Totally 22 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0100..AC:L38908..OS:Nicotiana tabacum..GENE:extensin..PROD:extensin..[ -200: +51]..CDS:+31..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16 TFBS AC: RSP00014//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: MRE-core /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 102 TaaAACCTACC 92 (Mism.= 2) TFBS AC: RSP00489//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 99 aACCTACCAA 90 (Mism.= 1) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 61 TTTGgTTTTGTcATgT 46 (Mism.= 3) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 52 CAAAACCAA 60 (Mism.= 0) TFBS AC: RSP00828//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: MRE-core (AtFLS) /BF: R2R3-type MYB Motifs on "-" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 102 tAaAACCTACCA 91 (Mism.= 2) TFBS AC: RSP01453//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-I /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00939 Up.Conf.Int. 1 Found 1 98 ACCTACC 92 (Mism.= 0) TFBS AC: RSP01478//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00241 Up.Conf.Int. 1 Found 1 33 ATTTGAGCCgAcAaC 47 (Mism.= 3) TFBS AC: RSP01499//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 238 TTCCCCaTCT 229 (Mism.= 1) TFBS AC: RSP01500//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 238 TTCCCCaTCT 229 (Mism.= 1) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 223 TTTCAAAG 230 (Mism.= 0) TFBS AC: RSP02095//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE1 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 130 TTCATGAA 137 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 137 TTCATGAA 130 (Mism.= 0) TFBS AC: RSP02334//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 8 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00939 Up.Conf.Int. 1 Found 1 98 ACCTACC 92 (Mism.= 0) TFBS AC: RSP02587//OS: white spruce (Picea glauca [Moench] Voss) /GENE: Pg4CL/TFBS: AC-I /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00939 Up.Conf.Int. 1 Found 1 98 ACCTACC 92 (Mism.= 0) TFBS AC: RSP02588//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-I /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00939 Up.Conf.Int. 1 Found 1 98 ACCTACC 92 (Mism.= 0) TFBS AC: RSP02762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS2 (MYB58) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 18 TACCAACT 25 (Mism.= 0) TFBS AC: RSP02763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS1 (MYB63) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 18 TACCAACT 25 (Mism.= 0) TFBS AC: RSP02944//OS: maize (Zea mays) /GENE: RLK/TFBS: RS2 BS /BF: RS2 Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 101 aAAACCTACC 92 (Mism.= 1) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 215 CTCATTTGtT 224 (Mism.= 1) TFBS AC: RSP02962//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box D /BF: BZR1 Motifs on "-" Strand: Mean Exp. Number 0.00347 Up.Conf.Int. 1 Found 1 224 AACAAaTGAG 215 (Mism.= 1) Totally 20 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0101..AC:M63634 M38281..OS:Nicotiana plumbaginifolia..GENE:beta-1,3-glucanase regulator..PROD:beta-1,3-glucanase regulator..[ -200: +51]..CDS:+30..TSS:201 (+1) # Alternative TSS(s): +7 |Taxon: Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.36 C - 0.14 TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 93 tATTATTTTTAAA 105 (Mism.= 1) TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00717 Up.Conf.Int. 1 Found 1 142 AATATTTTTATa 153 (Mism.= 1) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00851 Up.Conf.Int. 1 Found 1 195 TtCACGTAaC 186 (Mism.= 2) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "-" Strand: Mean Exp. Number 0.00403 Up.Conf.Int. 1 Found 1 235 GTATCCATG 227 (Mism.= 0) TFBS AC: RSP00404//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adja /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 114 TTTGCGT 120 (Mism.= 0) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00430 Up.Conf.Int. 1 Found 1 135 CCACTTG 141 (Mism.= 0) TFBS AC: RSP00606//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: box II W /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00148 Up.Conf.Int. 1 Found 1 138 GTGGTGAaTTAAAt 125 (Mism.= 2) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "+" Strand: Mean Exp. Number 0.00430 Up.Conf.Int. 1 Found 1 135 CCACTTG 141 (Mism.= 0) TFBS AC: RSP02701//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-1 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00820 Up.Conf.Int. 1 Found 1 3 AAAAATTgCAC 13 (Mism.= 1) TFBS AC: RSP02711//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 3 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 165 GCCTtAAGCCt 155 (Mism.= 2) TFBS AC: RSP02768//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC055 BS /BF: ANAC055 Motifs on "+" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 184 AtGTTACGTG 193 (Mism.= 1) TFBS AC: RSP02769//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC019 BS /BF: ANAC019 Motifs on "+" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 184 AtGTTACGTG 193 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0102..AC:M60402..OS:Nicotiana tabacum..GENE:glucanase GLA..PROD:glucan beta-1,3-glucanase..[ -200: +51]..CDS:+17..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.31 C - 0.23 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP00233//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS5 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "+" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 220 TCTACcTCAC 229 (Mism.= 1) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 92 GGCGGC 97 (Mism.= 0) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 63 GTTGACATGT 72 (Mism.= 2) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 63 GTTGACATGT 72 (Mism.= 2) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 63 GTTGACATGT 72 (Mism.= 2) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 66 cAACTTgATCATTT 53 (Mism.= 2) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "-" Strand: Mean Exp. Number 0.00502 Up.Conf.Int. 1 Found 1 88 GGTGACcTGGC 78 (Mism.= 1) TFBS AC: RSP01320//OS: tobacco (Nicotiana tabacum) /GENE: PRB-1b/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP01321//OS: tobacco (Nicotiana tabacum) /GENE: CHN17/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP01322//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP01323//OS: tobacco (Nicotiana tabacum) /GENE: GLN2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP01324//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn1/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP01325//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP01341//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AtEBP Motifs on "-" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 25 TCAtCAAACTCA 36 (Mism.= 1) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP02118//OS: fungus Trichoderma harzianum /GENE: ech-42/TFBS: Cre1 BS1 /BF: Cre1 Motifs on "+" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 87 CCgGGGGC 94 (Mism.= 1) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 1 20 TTaCATCATCaAA 32 (Mism.= 2) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 98 AGCCGCC 92 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "-" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 99 GAGCCGCCcC 90 (Mism.= 1) TFBS AC: RSP02650//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EBE /BF: ERF (At1g04370, At2g31230); DREB (At3g11020, At4g13620) Motifs on "-" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 102 TAAGAGCCGCC 92 (Mism.= 0) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "-" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 97 GCCGCC 92 (Mism.= 0) TFBS AC: RSP02778//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: VOZ2C BS /BF: VOZ2C Motifs on "-" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 97 gCCGCCC 91 (Mism.= 1) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00737 Up.Conf.Int. 1 Found 1 78 GCCAgGTCAcC 88 (Mism.= 2) TFBS AC: RSP02955//OS: maize (Zea mays) /GENE: FIP1/TFBS: WRI1 BS /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 98 aGCCGCCCC 90 (Mism.= 1) Totally 43 motifs of 43 different TFBSs have been found ____________________________________________________________ >PLPR0103..AC:M80491..OS:Nicotiana plumbaginifolia..GENE:pma3..PROD:plasma membrane H+ ATPase..[ -200: +51]..CDS:+205..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.43 G - 0.19 T - 0.28 C - 0.10 TFBS AC: RSP00031//OS: maize (Zea mays) /GENE: SBEI/TFBS: "-314" /BF: nuclear proteins Motifs on "+" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 129 ACAaAAAATAAAAAAgGaaA 148 (Mism.= 4) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 83 aAAGTGGTGtTG 94 (Mism.= 2) TFBS AC: RSP00475//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS5 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00224 Up.Conf.Int. 1 Found 1 83 AAAGtGGTGtTG 94 (Mism.= 2) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 219 CCAAAGGC 226 (Mism.= 1) TFBS AC: RSP01552//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: SvC4/TFBS: AT-rich region /BF: PC2 NBA Motifs on "-" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 165 TAAAcAAACAATTTCTaTtTccTTTTTT 138 (Mism.= 5) TFBS AC: RSP01577//OS: potato, Solanum tuberosum /GENE: PAT21/TFBS: ICEr2 /BF: STK Motifs on "-" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 167 GCTAAACAAa 158 (Mism.= 1) TFBS AC: RSP01578//OS: potato, Solanum tuberosum /GENE: PS20/TFBS: ICEr2 /BF: STK-related protein Motifs on "-" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 167 GCTAAACAAa 158 (Mism.= 1) TFBS AC: RSP01579//OS: potato, Solanum tuberosum /GENE: B33/TFBS: ICEr2 /BF: STK-related protein Motifs on "-" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 167 GCTAAACAAa 158 (Mism.= 1) TFBS AC: RSP01890//OS: Boea hygrometrica /GENE: BhGolS1/TFBS: W-box 1 /BF: BhWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 18 AcCTGACCAa 27 (Mism.= 2) TFBS AC: RSP02014//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_1) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 247 TACAAATGcT 238 (Mism.= 1) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 86 GTGGTGTTGA 95 (Mism.= 0) TFBS AC: RSP02514//OS: tomato (Solanum lycopersicum) /GENE: SlHsp26.1-P/TFBS: HSE (SlHsp26.1-P) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00349 Up.Conf.Int. 1 Found 1 68 AtGATCTTTCcA 57 (Mism.= 2) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0104..AC:M76552..OS:Lycopersicon esculentum..GENE:le25..PROD:le25..[ -200: +51]..CDS:+81..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.14 T - 0.28 C - 0.19 TFBS AC: RSP00006//OS: soybean (Glycine max) /GENE: GS15/TFBS: ATRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 183 AAATTAcTTTATAT 170 (Mism.= 1) TFBS AC: RSP00043//OS: rice (Oryza sativa) (Oryza sativa) /GENE: rab16A-D/TFBS: Motif I core /BF: TAF-1,transacting factor Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 136 TACGTGGC 143 (Mism.= 0) TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "-" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 122 GtACGCGTGGt 112 (Mism.= 2) TFBS AC: RSP00051//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: A3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 143 GCCACGTAaA 134 (Mism.= 1) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 143 GCCACGTAAa 134 (Mism.= 1) TFBS AC: RSP00430//OS: barley (Hordeum vulgare) /GENE: Hor2 gene/TFBS: GSN; hor1-box; /BF: BLZ1; bZIP transcription factor; Motifs on "-" Strand: Mean Exp. Number 0.00106 Up.Conf.Int. 1 Found 1 113 GTGAGTCAT 105 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 143 GCCACGTaaA 134 (Mism.= 2) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "-" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 143 GCCACGTAAa 134 (Mism.= 1) TFBS AC: RSP00854//OS: maize (Zea mays) /GENE: H4C7/TFBS: OCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 138 CGtGGCATC 146 (Mism.= 1) TFBS AC: RSP00871//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM1 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 114 GGTGAGTCAT 105 (Mism.= 0) TFBS AC: RSP00883//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: GZM /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00106 Up.Conf.Int. 1 Found 1 113 GTGAGTCAT 105 (Mism.= 0) TFBS AC: RSP00910//OS: barley (Hordeum vulgare) /GENE: HvABI5/TFBS: A1 /BF: HvABI5 Motifs on "-" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 146 GATGCCACGTAaa 134 (Mism.= 2) TFBS AC: RSP00912//OS: barley (Hordeum vulgare) /GENE: HvABI5/TFBS: A3 /BF: HvABI5 Motifs on "-" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 146 GAtGCCACGTaAA 134 (Mism.= 2) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 97 AGAAACTT 90 (Mism.= 0) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 35 CCTTTTTTGG 26 (Mism.= 0) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 137 ACGTGGC 143 (Mism.= 0) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 74 ACGTGTC 80 (Mism.= 0) TFBS AC: RSP01106//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rHex /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 145 AtGCCACGTaA 135 (Mism.= 2) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 35 CCTTTTTTGG 26 (Mism.= 0) TFBS AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 35 CCTTTTTTGG 26 (Mism.= 1) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 135 TtACGTGG 142 (Mism.= 1) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 135 tTACGTGG 142 (Mism.= 1) TFBS AC: RSP01331//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CArG3 (AGL15) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 165 cTcCTATATAaAGTAA 180 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 180 TTACTtTATATAGgAg 165 (Mism.= 3) TFBS AC: RSP01332//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DTA4/TFBS: CArG3 (DTA4) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 165 cTcCTATATAaAGTAA 180 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 180 TTACTtTATATAGgAg 165 (Mism.= 3) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 135 TtACGTGG 142 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00237 Up.Conf.Int. 1 Found 1 136 tACGTGGC 143 (Mism.= 1) TFBS AC: RSP01861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 136 TACGTGGC 143 (Mism.= 0) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 136 TAcGTGGCA 144 (Mism.= 1) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 134 tTtACGTGGC 143 (Mism.= 2) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 35 CCTTTTTTGG 26 (Mism.= 1) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 8 TATCTTGTTGA 18 (Mism.= 2) TFBS AC: RSP02393//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VDD/TFBS: CArG1 /BF: STK-SEP3 Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 26 CCAAAAAAGG 35 (Mism.= 1) TFBS AC: RSP02661//OS: gray rockcress (Arabis alpina) /GENE: AaCathB3/TFBS: G-box /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 70 CAaAACGTGTCA 81 (Mism.= 1) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 74 ACGTGTC 80 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 137 ACGTGGC 143 (Mism.= 0) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 71 aAAACGTGTC 80 (Mism.= 1) Totally 38 motifs of 36 different TFBSs have been found ____________________________________________________________ >PLPR0105..AC:M59427..OS:Lycopersicon peruvianum..GENE:proteinase inhibitor I..PROD:proteinase inhibitor I..[ -200: +51]..CDS:+36..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.33 C - 0.18 TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 159 CCACATGC 166 (Mism.= 1) TFBS AC: RSP02011//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_1) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00127 Up.Conf.Int. 1 Found 1 158 AcCACATGCC 167 (Mism.= 1) TFBS AC: RSP02493//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (6) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00848 Up.Conf.Int. 1 Found 1 124 ACCACA 119 (Mism.= 0) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "-" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 170 AtAgGCATGTG 160 (Mism.= 2) TFBS AC: RSP02844//OS: tomato (Solanum lycopersicum) /GENE: GAME4/TFBS: P box 1 /BF: JRE-4 Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 135 TAGCaCCtCA 144 (Mism.= 2) TFBS AC: RSP02965//OS: potato (Solanum tuberosum) /GENE: StSP5G/TFBS: StCOL1 BS /BF: StCOL1 Motifs on "+" Strand: Mean Exp. Number 0.00848 Up.Conf.Int. 1 Found 1 119 TGTGGT 124 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0106..AC:X56240..OS:Vicia faba..GENE:USP..PROD:unknown seed protein..[ -200: +51]..CDS:+52..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.31 C - 0.18 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 90 ACACaTGGC 82 (Mism.= 1) TFBS AC: RSP00016//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: RY /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 27 CATGCAC 21 (Mism.= 0) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 24 CATGCATG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 31 CATGCATG 24 (Mism.= 0) TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 61 AAaTATTTTTAAA 49 (Mism.= 1) TFBS AC: RSP00349//OS: maize, Zea mays /GENE: C1/TFBS: Sph-core /BF: VP1 (VIVAPAROUS1) Motifs on "-" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 33 TCCATGCAT 25 (Mism.= 0) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00100 Up.Conf.Int. 1 Found 1 35 CaTCCATGCAT 25 (Mism.= 1) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00738 Up.Conf.Int. 1 Found 1 104 CCACTTG 110 (Mism.= 0) TFBS AC: RSP00544//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 15/GT-1 N1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 175 ATGAGGaTtTTGC 187 (Mism.= 2) TFBS AC: RSP00580//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: LRE-TATA AA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 227 TTATaATTTCtTcATA 242 (Mism.= 3) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 112 tCCAAGTGGA 103 (Mism.= 1) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 89 CACaTG 84 -- 5-- 78 CATGCA 73 (Mism.= 1/ 0) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 23 GCATGCATGg 32 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 32 CCATGCATGC 23 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 24 CATGCATG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 31 CATGCATG 24 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 24 CATGCATG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 31 CATGCATG 24 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 155 TtATGCATGT 164 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00713 Up.Conf.Int. 1 Found 1 103 TCCACTTGg 111 (Mism.= 1) TFBS AC: RSP02006//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 3 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 94 ACcATGACATcC 105 (Mism.= 2) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "+" Strand: Mean Exp. Number 0.00738 Up.Conf.Int. 1 Found 1 104 CCACTTG 110 (Mism.= 0) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 24 CATGCATG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 31 CATGCATG 24 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 24 CATGCATG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 31 CATGCATG 24 (Mism.= 0) Totally 26 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0107..AC:X52201..OS:Zea mays..GENE:C1-I..PROD:C1-I..[ -200: +51]..CDS:+18..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.32 T - 0.19 C - 0.28 TFBS AC: RSP00043//OS: rice (Oryza sativa) (Oryza sativa) /GENE: rab16A-D/TFBS: Motif I core /BF: TAF-1,transacting factor Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 104 TACGTGGC 97 (Mism.= 0) TFBS AC: RSP00064//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 106 AcTACGTGGC 97 (Mism.= 1) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 58 CATGCATG 65 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 65 CATGCATG 58 (Mism.= 0) TFBS AC: RSP00150//OS: maize (Zea mays) /GENE: C1/TFBS: ABRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 49 CGTGTCGTCCATGCAT 64 (Mism.= 0) TFBS AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: AT-rich motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 171 TTTAAAT 177 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 176 TTTAAAT 170 (Mism.= 0) TFBS AC: RSP00186//OS: rice (Oryza sativa), Oryza sativa /GENE: Amy3D/TFBS: G-box motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 105 CTACGTGGCCG 95 (Mism.= 1) TFBS AC: RSP00230//OS: parsley, Petroselinum crispum /GENE: CHS-1/TFBS: MRECHS /BF: PcMYB1; (Myb1 from P. crispum) Motifs on "-" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 81 cACCTAACCT 72 (Mism.= 1) TFBS AC: RSP00349//OS: maize, Zea mays /GENE: C1/TFBS: Sph-core /BF: VP1 (VIVAPAROUS1) Motifs on "+" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 56 TCCATGCAT 64 (Mism.= 0) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 1 54 CGTCCATGCAT 64 (Mism.= 0) TFBS AC: RSP00488//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 105 CTACGTgGCC 96 (Mism.= 1) TFBS AC: RSP00516//OS: maize (Zea mays) /GENE: C1/TFBS: LRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 85 GGCCTCAACTCGGCCACGTAGT 106 (Mism.= 0) TFBS AC: RSP00634//OS: maize, Zea mays /GENE: C1/TFBS: Sph /BF: VP1 (VIVAPAROUS1) Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 49 CGTGTCGTCCATGCATGCACTTT 71 (Mism.= 0) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 174 TAAATGCA 167 (Mism.= 0) TFBS AC: RSP00655//OS: rice (Oryza sativa) /GENE: PAL/TFBS: TATA box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 178 TATTTAA 172 (Mism.= 0) TFBS AC: RSP00746//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 6 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00258 Up.Conf.Int. 1 Found 1 14 ATGcaGTTAAAA 3 (Mism.= 2) TFBS AC: RSP00880//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M1 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 26 CAAgGGCAAC 17 (Mism.= 1) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 57 cCATGCATGC 66 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 66 GCATGCATGg 57 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 58 CATGCATG 65 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 65 CATGCATG 58 (Mism.= 0) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 105 CTACGTGG 98 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 58 CATGCATG 65 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 65 CATGCATG 58 (Mism.= 0) TFBS AC: RSP01714//OS: Arabidopsis (Arabidopsis thaliana) /GENE: REH1/PIN3 (At1g70940)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00246 Up.Conf.Int. 1 Found 1 96 GGcCACGTAgTT 107 (Mism.= 2) TFBS AC: RSP01830//OS: rice (Oryza sativa) /GENE: KAR/TFBS: GAMYB BS (KAR) /BF: GAMYB Motifs on "+" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 6 TAACTGcAT 14 (Mism.= 1) TFBS AC: RSP01861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 104 TACGTGGC 97 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00872 Up.Conf.Int. 1 Found 1 105 CtACGTGGCC 96 (Mism.= 1) TFBS AC: RSP02409//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS2 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 66 CACTTTA 72 (Mism.= 0) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 58 CATGCATG 65 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 65 CATGCATG 58 (Mism.= 0) TFBS AC: RSP02758//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS1 (CCR1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 81 CACCTAAC 74 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 58 CATGCATG 65 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 65 CATGCATG 58 (Mism.= 0) TFBS AC: RSP02894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 81 CACCTAAC 74 (Mism.= 0) TFBS AC: RSP02932//OS: maize (Zea mays) /GENE: GRMZM2G097457/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 46 TGTCGTGTCg 55 (Mism.= 1) Totally 37 motifs of 30 different TFBSs have been found ____________________________________________________________ >PLPR0108..AC:X60205..OS:Zea mays..GENE:c2..PROD:chalcone synthase..[ -200: +51]..CDS:+238..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.14 G - 0.25 T - 0.13 C - 0.48 TFBS AC: RSP00004//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif g /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 173 TTTATA 168 (Mism.= 0) TFBS AC: RSP00048//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: ABRE A2; ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00114 Up.Conf.Int. 1 Found 1 106 CCcACGTGGCGG 117 (Mism.= 1) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 165 TTATATA 171 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 1 172 TTATATA 166 (Mism.= 0) TFBS AC: RSP00147//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 168 TATAAA 173 (Mism.= 0) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 108 CACGTGGC 115 (Mism.= 0) TFBS AC: RSP00655//OS: rice (Oryza sativa) /GENE: PAL/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 166 TATaTAA 172 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 115 GCCACGTGGg 106 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 107 CCACGTGG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 114 CCACGTGG 107 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 108 CACGTGGC 115 (Mism.= 0) TFBS AC: RSP00759//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif D /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 164 cTTATAT 170 (Mism.= 1) TFBS AC: RSP00808//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 36 GTTAGTT 30 (Mism.= 0) TFBS AC: RSP00810//OS: arabidopsis (Arabidopsis thaliana) /GENE: Ribosomal protein S13-like/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 36 GTTAGTT 30 (Mism.= 0) TFBS AC: RSP00812//OS: arabidopsis (Arabidopsis thaliana) /GENE: Putative phosphate transporter/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 36 GTTAGTT 30 (Mism.= 0) TFBS AC: RSP00813//OS: arabidopsis (Arabidopsis thaliana) /GENE: SIMIP/TFBS: Myb1 /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 36 GTTAGTT 30 (Mism.= 0) TFBS AC: RSP00960//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: MYB BS /BF: HvGAMYB Motifs on "+" Strand: Mean Exp. Number 0.00148 Up.Conf.Int. 1 Found 1 29 CAACTAAC 36 (Mism.= 0) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 28 CCAACTAACCCC 39 (Mism.= 0) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 107 CCACGTGG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 114 CCACGTGG 107 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 108 CACGTGGC 115 (Mism.= 0) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00796 Up.Conf.Int. 1 Found 1 116 cGCCACGTGGGc 105 (Mism.= 2) TFBS AC: RSP01875//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 2CPA/TFBS: CE3 /BF: Rap2.4a Motifs on "+" Strand: Mean Exp. Number 0.00141 Up.Conf.Int. 1 Found 1 20 CACGCGACCCAAC 32 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 114 CCACGTGGgC 105 (Mism.= 1) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 106 cCCACGTGGC 115 (Mism.= 1) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 107 CCACGTGG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 114 CCACGTGG 107 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "-" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 120 GgGCCGCCAC 111 (Mism.= 1) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 107 CCACGTGG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 114 CCACGTGG 107 (Mism.= 0) Totally 30 motifs of 25 different TFBSs have been found ____________________________________________________________ >PLPR0109..AC:X53398 S45324..OS:Zea mays..GENE:Cab-m7..PROD:light harvesting chlorophyll a/b binding protein..[ -200: +51]..CDS:+65..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.23 G - 0.18 T - 0.25 C - 0.34 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 1 61 ACACGTGGC 53 (Mism.= 0) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 59 ACGTGGCGC 51 (Mism.= 0) TFBS AC: RSP00066//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1b /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 59 ACGTGGCGC 51 (Mism.= 1) TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 102 ttTATTTTTATT 113 (Mism.= 2) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 102 ttTATTTTTATT 113 (Mism.= 2) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 101 AtTTATTTTTATT 113 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 60 CACGTGGC 53 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 62 aACACGTGGC 53 (Mism.= 1) TFBS AC: RSP00488//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 239 CTACGTAGCg 230 (Mism.= 1) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 60 CACGTGGC 53 (Mism.= 0) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 102 ttTATTTTTATT 113 (Mism.= 2) TFBS AC: RSP00819//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: ACE-core (AtF3H) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 53 GCCACGTgTT 62 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00455 Up.Conf.Int. 1 Found 1 61 ACACGTGG 54 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 165 CTtTAAATAC 174 (Mism.= 1) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 165 CTtTAAATAC 174 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 60 CACGTGGC 53 (Mism.= 0) TFBS AC: RSP01810//OS: banana (Musa acuminata subgroup Cavendish, cv Giant governor) /GENE: SPS/TFBS: ERE /BF: 25 kDa unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00796 Up.Conf.Int. 1 Found 1 151 ACCGCCG 145 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 53 GCCACGTGTt 62 (Mism.= 1) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 62 AACACGTGgC 53 (Mism.= 1) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "-" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 1 61 ACACGTGGC 53 (Mism.= 0) TFBS AC: RSP02386//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: NON /BF: NtWLIM2 Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 221 AGATCGAtGGT 211 (Mism.= 1) TFBS AC: RSP02418//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 78-82/85-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 218 TCGATGGTGG 209 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 53 GCCACGTGTT 62 (Mism.= 0) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 53 GcCACGTGTT 62 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 62 AACACGTGGC 53 (Mism.= 0) TFBS AC: RSP02947//OS: maize (Zea mays) /GENE: NAD(P)-binding protein/TFBS: GBF6 BS/1 /BF: GBF6 Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 59 ACGTGGCGC 51 (Mism.= 0) Totally 26 motifs of 26 different TFBSs have been found ____________________________________________________________ >PLPR0110..AC:X78988..OS:Zea mays..GENE:MPI..PROD:proteinase inhibitor..[ -200: +51]..CDS:+205..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.23 G - 0.20 T - 0.29 C - 0.27 TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00440 Up.Conf.Int. 1 Found 1 148 CACACGTC 155 (Mism.= 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00892 Up.Conf.Int. 1 Found 1 178 TATAAATACCtc 189 (Mism.= 2) TFBS AC: RSP01198//OS: Chlorella vulgaris /GENE: NR/TFBS: USF BS /BF: USF Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 146 CACaCACGTcCTGC 159 (Mism.= 2) TFBS AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/TFBS: PLE-79 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 239 AGCAAGA 245 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00108 Up.Conf.Int. 1 Found 1 177 CTATAAATA 185 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00896 Up.Conf.Int. 1 Found 1 177 CTATAAATAC 186 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00896 Up.Conf.Int. 1 Found 1 177 CTATAAATAC 186 (Mism.= 0) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 122 TCGTGTGC 129 (Mism.= 0) TFBS AC: RSP02304//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS1 (W) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 26 aTgCTGACTATT 37 (Mism.= 2) TFBS AC: RSP02575//OS: Tamarix androssowii /GENE: TaeIF5A1/TFBS: W-box /BF: TaWRKY; TaRAV Motifs on "+" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 26 AtGCTGACT 34 (Mism.= 1) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 62 TGGAtTTTTT 71 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 178 TATAAATA 185 (Mism.= 0) TFBS AC: RSP02950//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/1 /BF: E2F1 Motifs on "-" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 20 AGCGCGCGtA 11 (Mism.= 1) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0111..AC:X97322..OS:Pisum sativum..GENE:rpL9..PROD:ribosomal protein L9..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): -12 -5 +6 +8 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.22 T - 0.22 C - 0.18 TFBS AC: RSP00230//OS: parsley, Petroselinum crispum /GENE: CHS-1/TFBS: MRECHS /BF: PcMYB1; (Myb1 from P. crispum) Motifs on "+" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 93 AACCTAACCa 102 (Mism.= 1) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 174 TTAGGGTTT 182 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 182 AAACCCTAA 174 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 174 TTAGGGTTT 182 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 159 CaCTATATAT 168 (Mism.= 1) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 183 aAAACCCTAA 174 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 183 aaAACCCTAA 174 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 182 AAACCCTA 175 (Mism.= 0) TFBS AC: RSP01846//OS: watermelon (Citrullus vulgaris) /GENE: AGPL1/TFBS: TCCAAAA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00949 Up.Conf.Int. 1 Found 1 186 TCCAAAA 180 (Mism.= 0) TFBS AC: RSP01981//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 179 GTTTTGGAA 187 (Mism.= 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 175 TAGGGTTT 182 (Mism.= 0) TFBS AC: RSP02712//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 4 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 186 TCCAAAAcCCT 176 (Mism.= 1) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00906 Up.Conf.Int. 1 Found 1 182 AAACCCTAA 174 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0112..AC:AJ292756..OS:Arabidopsis thaliana..GENE:pyk10..PROD:ribosomal protein L9..[ -200: +51]..TSS+3522 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.28 C - 0.14 TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00995 Up.Conf.Int. 1 Found 1 29 CGTaCATGgAT 19 (Mism.= 2) TFBS AC: RSP00999//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 3'-III element /BF: 3AF3 Motifs on "+" Strand: Mean Exp. Number 0.00603 Up.Conf.Int. 1 Found 1 166 TCACTATaTAA 176 (Mism.= 1) TFBS AC: RSP01060//OS: sunflower (Helianthus annuus) /GENE: OLIGOs/TFBS: Hahb-4 BS /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 148 CAATAATTG 156 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 156 CAATTATTG 148 (Mism.= 0) TFBS AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: HDZIP BS /BF: CpbZIP1; CpbZIP2 (short); Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 148 CAATAATTG 156 (Mism.= 0) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 211 AAcATTTTTTCTt 223 (Mism.= 2) TFBS AC: RSP01612//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-2 /BF: GmDof4 Motifs on "-" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 146 TCTCTCTTTATgtT 133 (Mism.= 2) TFBS AC: RSP01881//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Athb-1 BS /BF: Athb-1 Motifs on "+" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 148 CAATAATTG 156 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 156 CAATTATTG 148 (Mism.= 0) TFBS AC: RSP02037//OS: Medicago truncatula /GENE: LBD1/TFBS: HB1 BS /BF: HB1 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 148 CAATAATTG 156 (Mism.= 0) TFBS AC: RSP02080//OS: Humicola gricea /GENE: cbh1.1; cbh1.2; egl1; pacC/TFBS: PacC BS (cons) /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00969 Up.Conf.Int. 1 Found 1 114 GCCAGG 109 (Mism.= 0) TFBS AC: RSP02910//OS: wheat (Triticum aestivum) /GENE: Synthetic oligonucleotides/TFBS: HDZ2 /BF: TaHDZipI-3; TaHDZipI-4; TaHDZipI-5 Motifs on "+" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 148 CAATAATTG 156 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 156 CAATTATTG 148 (Mism.= 0) TFBS AC: RSP02931//OS: maize (Zea mays) /GENE: GRMZM2G091201/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 106 TGGCcTGGCt 115 (Mism.= 2) Totally 14 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0113..AC:X74067..OS:Craterostigma plantagineum..GENE:CDeT6-19..PROD:dessication-related protein..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.13 T - 0.34 C - 0.24 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 63 gCACGTGGC 71 (Mism.= 1) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00780 Up.Conf.Int. 1 Found 1 52 CATaCA 57 -- 6-- 64 CACGTG 69 (Mism.= 1/ 0) TFBS AC: RSP00064//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 62 AGcACGTGGC 71 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 64 CACGTGGC 71 (Mism.= 0) TFBS AC: RSP00320//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: Box I /BF: RNFG1 Motifs on "+" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 143 tATCATCGATC 153 (Mism.= 1) TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 153 CAGCTGA 159 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 158 CAGCTGA 152 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 64 CACGTGGC 71 (Mism.= 0) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 71 GCCACGTgCT 62 (Mism.= 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 204 GATGAAATGG 195 (Mism.= 1) TFBS AC: RSP00914//OS: maize (Zea mays) /GENE: b-32/TFBS: B2 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 204 GATGAAATGG 195 (Mism.= 1) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 71 GcCACGTGCt 62 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 71 GcCACGTGcT 62 (Mism.= 2) TFBS AC: RSP01010//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB2A BS /BF: DREB2A Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 41 TGCCGACAT 49 (Mism.= 0) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 65 ACGTGGC 71 (Mism.= 0) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 104 ACGTGTC 110 (Mism.= 0) TFBS AC: RSP01104//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: AC2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 175 AAACCTCC 182 (Mism.= 0) TFBS AC: RSP01139//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 65 ACGTGGcTT 73 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 101 GAAACGTGTC 110 (Mism.= 2) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00672 Up.Conf.Int. 1 Found 1 218 TCAgATGTGT 209 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 64 CACGTGGC 71 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 71 GCCACGTGct 62 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 63 gCACGTGGCt 72 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 70 CCACGTGctC 61 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 62 AgCACGTGgC 71 (Mism.= 2) TFBS AC: RSP02025//OS: maize (Zea mays) /GENE: ZmWBC11a/TFBS: L-box /BF: OCL1 Motifs on "+" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 29 TAAATGTA 36 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 62 AgCACGTGgC 71 (Mism.= 2) TFBS AC: RSP02061//OS: maize (Zea mays) /GENE: ZmWBC11a/TFBS: L1 box /BF: OCL1 Motifs on "+" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 29 TAAATGTA 36 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 62 AGCACGTGGC 71 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 8 TGTCTTGTTTA 18 (Mism.= 2) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 8 TGTCTTGTTta 18 (Mism.= 2) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 63 GCACGTGG 70 (Mism.= 0) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00912 Up.Conf.Int. 1 Found 1 63 GCACGTGg 70 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 71 GCCACGTGcT 62 (Mism.= 1) TFBS AC: RSP02635//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: ABREdis /BF: Protein of ABF family Motifs on "-" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 75 GAAaGCCACGTGcTcT 60 (Mism.= 3) TFBS AC: RSP02663//OS: field mustard (Brassica rapa) /GENE: BrCathB3/TFBS: G-box /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 100 tGaAACGTGTCC 111 (Mism.= 2) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 104 ACGTGTC 110 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 65 ACGTGGC 71 (Mism.= 0) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 62 AgCACGTGGC 71 (Mism.= 1) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 101 gAAACGTGTC 110 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 71 GcCACGTGcT 62 (Mism.= 2) Totally 41 motifs of 39 different TFBSs have been found ____________________________________________________________ >PLPR0114..AC:X56268..OS:Nicotiana tabacum..GENE:GNT1..PROD:auxin-induced protein..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.45 G - 0.12 T - 0.27 C - 0.16 TFBS AC: RSP00259//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd22/TFBS: ATMYB2 BS /BF: ATMYB2 (MYB) Motifs on "+" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 137 TGGTTAG 143 (Mism.= 0) TFBS AC: RSP00406//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE-CHR /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 206 AGTGGtGG 199 -- 6-- 192 cTTGAA 187 (Mism.= 1/ 1) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 56 CAaCCACTTC 65 (Mism.= 1) TFBS AC: RSP01166//OS: maize (Zea mays) /GENE: pMS1/TFBS: CCAAT box /BF: HMG proteins Motifs on "-" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 241 ATtTTTTTGCtAATTt 226 (Mism.= 3) TFBS AC: RSP02130//OS: rice (Oryza sativa) /GENE: OsAns/TFBS: At-MYB2 BS /BF: At-MYB2 Motifs on "-" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 143 CTAACCA 137 (Mism.= 0) TFBS AC: RSP02572//OS: mangrove tree (Avicennia marina) /GENE: AmMYB1/TFBS: AmMYB1 BS /BF: AmMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 137 TGGTTAG 143 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0115..AC:X56269..OS:Nicotiana tabacum..GENE:GNT35..PROD:auxin-induced protein..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.28 C - 0.18 TFBS AC: RSP00069//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif j/k /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 102 CAATTTTGTAA 92 (Mism.= 2) TFBS AC: RSP00286//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 147 TCTtACCaACC 137 (Mism.= 2) TFBS AC: RSP00489//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 144 TACCaACCAA 135 (Mism.= 1) TFBS AC: RSP00651//OS: maize (Zea mays) /GENE: a1/TFBS: C1 PBS/P /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 147 tCtTACCAACC 137 (Mism.= 2) TFBS AC: RSP00749//OS: Catharanthus roseus /GENE: STR/TFBS: BN /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 100 ATTTTGTAATTA 89 (Mism.= 0) TFBS AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 129 TGATTTAATG 120 (Mism.= 1) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 146 CTtACCAACCa 136 (Mism.= 2) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 147 TCTtACCAACCa 136 (Mism.= 2) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00062 Up.Conf.Int. 1 Found 1 147 TCTtACCAACCa 136 (Mism.= 2) TFBS AC: RSP01168//OS: Vicia faba /GENE: LeB4/TFBS: GC element /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 22 AAGGTtCCT 14 (Mism.= 1) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 147 TCTtACCaACCA 136 (Mism.= 2) TFBS AC: RSP01271//OS: potato (Solanum tuberosum) /GENE: Pin-II/TFBS: WRE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 55 AAGCtTAAGT 46 (Mism.= 1) TFBS AC: RSP01454//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-II /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 143 ACCAACC 137 (Mism.= 0) TFBS AC: RSP01741//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY11) BS3 /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 79 aTATTGACCgAAT 67 (Mism.= 2) TFBS AC: RSP01754//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmMYB92 BS3 /BF: GmMYB92 Motifs on "-" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 147 TCTtACCaACC 137 (Mism.= 2) TFBS AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/TFBS: 39-bp element /BF: SIP1 Motifs on "+" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 183 ACAATTAAAGA 193 (Mism.= 0) TFBS AC: RSP02175//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp11/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 109 GAGAATAC 102 (Mism.= 0) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 143 ACCAACC 137 (Mism.= 0) TFBS AC: RSP02515//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-1 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "+" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 14 aGGAACcTTCAA 25 (Mism.= 2) TFBS AC: RSP02589//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 143 ACCAACC 137 (Mism.= 0) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 144 tACCAACC 137 (Mism.= 1) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 144 tACCAACC 137 (Mism.= 1) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 144 TACCAACC 137 (Mism.= 0) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 144 tACCAACC 137 (Mism.= 1) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 144 tACCAACC 137 (Mism.= 1) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 144 tACCAACC 137 (Mism.= 1) TFBS AC: RSP02904//OS: rice (Oryza sativa) /GENE: Os01t0182700/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 143 ACCAACC 137 (Mism.= 0) TFBS AC: RSP02906//OS: rice (Oryza sativa) /GENE: Os05t0499400/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 143 ACCAACC 137 (Mism.= 0) TFBS AC: RSP02907//OS: rice (Oryza sativa) /GENE: Os10t0474900/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 137 GGTTGGT 143 (Mism.= 0) TFBS AC: RSP02908//OS: rice (Oryza sativa) /GENE: Os11to4358/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 143 ACCAACC 137 (Mism.= 0) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 143 ACCAACCA 136 (Mism.= 0) Totally 31 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0116..AC:X56195..OS:Brassica napus..GENE:Bp19..PROD:auxin-induced protein..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.27 C - 0.25 TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 199 CCACCAgCCCCC 210 (Mism.= 1) TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 51 AATaATTTTTAAt 63 (Mism.= 2) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "+" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 51 AATaATTTTTAaT 63 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 249 AcTTATTTTTATT 237 (Mism.= 1) TFBS AC: RSP00443//OS: maize /GENE: cyPPDK1/TFBS: box c /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00033 Up.Conf.Int. 1 Found 1 125 CaTGcAAAGCTCAT 138 (Mism.= 2) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "-" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 53 ATtCaCCACA 44 (Mism.= 2) TFBS AC: RSP01642//OS: tobacco (Nicotiana tabacum) /GENE: WIPK/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 112 AAATGTCTCC 121 (Mism.= 0) TFBS AC: RSP02493//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (6) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00709 Up.Conf.Int. 1 Found 1 49 ACCACA 44 (Mism.= 0) TFBS AC: RSP02516//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-2 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "+" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 85 gaGAAGTTTCAG 96 (Mism.= 2) TFBS AC: RSP02892//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 206 GCTGgtGGAGA 196 (Mism.= 2) TFBS AC: RSP02965//OS: potato (Solanum tuberosum) /GENE: StSP5G/TFBS: StCOL1 BS /BF: StCOL1 Motifs on "+" Strand: Mean Exp. Number 0.00709 Up.Conf.Int. 1 Found 1 44 TGTGGT 49 (Mism.= 0) Totally 11 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0117..AC:S75487..OS:Lycopersicon esculentum..GENE:adh3b..PROD:alcohol dehydrogenase ADH..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.15 T - 0.33 C - 0.12 TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "-" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 73 TACAtTTTTGG 63 (Mism.= 1) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 1 AGTTgGGTTC 10 (Mism.= 1) Totally 2 motifs of 2 different TFBSs have been found ____________________________________________________________ >PLPR0118..AC:AF020542..OS:Malus domestica..GENE:Ypr10..PROD:major allergen Mal d 1..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.28 C - 0.23 TFBS AC: RSP00426//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE1/ABRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 187 ACtGAGAgGTG 177 (Mism.= 2) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 168 TATAAATACCAc 179 (Mism.= 1) TFBS AC: RSP00831//OS: tobacco (Nicotiana sylvestris) /GENE: psaDb/TFBS: LRE (activator) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 126 CTCTACAAaTTtAC 113 (Mism.= 2) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "+" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 149 ATGCCCCAaA 158 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00938 Up.Conf.Int. 1 Found 1 83 TCACtTGTGT 74 (Mism.= 1) TFBS AC: RSP01686//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE D /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 28 CACACA 23 (Mism.= 0) TFBS AC: RSP01983//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: HVH21 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 77 CAAGTGACA 85 (Mism.= 0) TFBS AC: RSP02034//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YUC4 (At5g11320)/TFBS: STY1 BS (YUC4) /BF: STY1 Motifs on "+" Strand: Mean Exp. Number 0.00821 Up.Conf.Int. 1 Found 1 156 aaACTCTACTC 166 (Mism.= 2) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "-" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 32 CTCTCaCAC 24 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0119..AC:Y11037..OS:Beta vulgaris..GENE:BV-16/1..PROD:V-ATPase, c subunit..[ -200: +51]..CDS:+176..TSS+1152 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.28 C - 0.29 TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 232 ATAGAgATCAA 222 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 127 ACACGTG 121 (Mism.= 0) TFBS AC: RSP00594//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: GATA/2 T /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 52 TGAGATAAaATTAAgGA 68 (Mism.= 2) TFBS AC: RSP00635//OS: soybean (Glycine max) /GENE: SAUR 15A/TFBS: NDE Box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 135 GGTCCCAT 142 (Mism.= 0) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 153 TTCTCTCTCCT 163 (Mism.= 0) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 108 ATCgATATTTcgGGT 94 (Mism.= 3) TFBS AC: RSP00755//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif A /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00806 Up.Conf.Int. 1 Found 1 65 AGGAATA 71 (Mism.= 0) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 128 aACACGTGCT 119 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 162 GGAGAGAGA 154 (Mism.= 0) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00360 Up.Conf.Int. 1 Found 1 119 aGCACGTGtT 128 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00514 Up.Conf.Int. 1 Found 1 128 aACACGTGCt 119 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 119 AgCACGTGTT 128 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 128 AaCACGTGcT 119 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00514 Up.Conf.Int. 1 Found 1 128 aACACGTGCt 119 (Mism.= 2) TFBS AC: RSP01003//OS: snapdragon (Antirrhinum majus) /GENE: DEFH125/TFBS: CArG1 /BF: DEF/GLO Motifs on "+" Strand: Mean Exp. Number 0.00768 Up.Conf.Int. 1 Found 1 58 AaAATTAAGG 67 (Mism.= 1) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00638 Up.Conf.Int. 1 Found 1 146 AGAAACTT 153 (Mism.= 0) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 128 aACACGTGCt 119 (Mism.= 2) TFBS AC: RSP01505//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 106 GATCGGACt 114 (Mism.= 1) TFBS AC: RSP01506//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 106 GATCGGACt 114 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 119 AgCACGTGTt 128 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 119 AgCACGTGTt 128 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 128 AACACGTGct 119 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 128 AACACGTGct 119 (Mism.= 2) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 120 GCACGTGt 127 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 120 GCACGTGt 127 (Mism.= 1) TFBS AC: RSP02419//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 92-94 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 191 GATCCCAT 198 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 119 agCACGTGTT 128 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 119 agCACGTGTT 128 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 128 aACACGTGcT 119 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 119 agCACGTGTT 128 (Mism.= 2) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 121 CACGTGtT 128 (Mism.= 1) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 128 aaCACGTGCT 119 (Mism.= 2) TFBS AC: RSP02896//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 137 ACCcAACAT 129 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 128 AACACGTGct 119 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00360 Up.Conf.Int. 1 Found 1 119 aGCACGTGtT 128 (Mism.= 2) Totally 35 motifs of 32 different TFBSs have been found ____________________________________________________________ >PLPR0120..AC:X66135.1..OS:Spinacia oleracea..GENE:rps1..PROD:chloroplastic ribosomal protein S1..[ -200: +51]..CDS:+52..TSS:201 (+1) # Alternative TSS(s): -42 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.24 C - 0.32 TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "-" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 114 cCAAcAATATGC 103 (Mism.= 2) TFBS AC: RSP00631//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CII /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00019 Up.Conf.Int. 1 Found 1 100 TGTGcaTATTGTT 112 (Mism.= 2) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 134 AACAACCTCTCTC 146 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 176 AGAGAGAGA 168 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 178 GGAGAGAGA 170 (Mism.= 0) TFBS AC: RSP02034//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YUC4 (At5g11320)/TFBS: STY1 BS (YUC4) /BF: STY1 Motifs on "+" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 177 CcACTCTACTC 187 (Mism.= 1) TFBS AC: RSP02168//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: LBS /BF: LUX Motifs on "-" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 207 AGATACGC 200 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 178 GGAGAGAGAG 169 (Mism.= 0) TFBS AC: RSP02858//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 112 TGGGCC 117 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0121..AC:U14599..OS:Zea mays..GENE:Bz2..PROD:unknown seed protein..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.27 T - 0.17 C - 0.32 TFBS AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: AT-rich motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00288 Up.Conf.Int. 1 Found 1 165 TTTAAAT 171 (Mism.= 0) TFBS AC: RSP00652//OS: maize (Zea mays) /GENE: a1/TFBS: C1 DBS /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 158 CCGGTAGT 151 (Mism.= 0) TFBS AC: RSP00663//OS: soybean (Glycine max) /GENE: VspB/TFBS: SRD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00193 Up.Conf.Int. 1 Found 1 161 CCCGttTAAATTG 173 (Mism.= 2) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 14 aACACGTGCT 23 (Mism.= 1) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 98 CgCACCAACCC 108 (Mism.= 1) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00265 Up.Conf.Int. 1 Found 1 23 AgCACGTGTT 14 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00108 Up.Conf.Int. 1 Found 1 97 TCgCACCAACCC 108 (Mism.= 1) TFBS AC: RSP01526//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box II /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 79 CGtCCAAAtTCG 68 (Mism.= 2) TFBS AC: RSP01830//OS: rice (Oryza sativa) /GENE: KAR/TFBS: GAMYB BS (KAR) /BF: GAMYB Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 94 TAACTGAtT 86 (Mism.= 1) TFBS AC: RSP02766//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ATAF1 BS /BF: ATAF1 Motifs on "+" Strand: Mean Exp. Number 0.00792 Up.Conf.Int. 1 Found 1 218 AAGTCACGTC 227 (Mism.= 2) TFBS AC: RSP02932//OS: maize (Zea mays) /GENE: GRMZM2G097457/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00984 Up.Conf.Int. 1 Found 1 139 aGTCGTGTCA 130 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0122..AC:U01377..OS:Arabidopsis thaliana..GENE:cor15a..PROD:unknown seed protein..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.34 C - 0.21 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 68 ACACGTGGC 76 (Mism.= 0) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00107 Up.Conf.Int. 1 Found 1 68 aCACGTGGCC 77 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00107 Up.Conf.Int. 1 Found 1 68 aCACGTGGCC 77 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00058 Up.Conf.Int. 1 Found 1 69 CACGTGGC 76 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 67 tACACGTGGC 76 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 66 TtACACGTGGCc 77 (Mism.= 2) TFBS AC: RSP00405//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adjb /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 140 TTTGGAGT 147 (Mism.= 0) TFBS AC: RSP00463//OS: arabidopsis (Arabidopsis thaliana) /GENE: COR15a/TFBS: C-repeat/DRE /BF: CBF1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 10 ATTTCATGGCCGACCTGCTTTTT 32 (Mism.= 0) TFBS AC: RSP00464//OS: arabidopsis (Arabidopsis thaliana) /GENE: COR15b/TFBS: C-repeat/DRE /BF: CBF1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 10 AtTTcATGGCCGACCTgcTTTTT 32 (Mism.= 4) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 68 ACACGTG 74 (Mism.= 0) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00650 Up.Conf.Int. 1 Found 1 32 TTTTtCTTcTTCTTTC 47 (Mism.= 2) TFBS AC: RSP00620//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: 2 CC /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 184 GAGATtAGAtTcTTCTC 200 (Mism.= 3) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 76 GCCACGTGtA 67 (Mism.= 1) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00058 Up.Conf.Int. 1 Found 1 69 CACGTGGC 76 (Mism.= 0) TFBS AC: RSP00783//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 7 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 67 TACACGTGGC 76 (Mism.= 0) TFBS AC: RSP00887//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (1) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 197 AAGAATCTA 189 (Mism.= 0) TFBS AC: RSP00927//OS: hot pepper (Capsicum annuum) /GENE: defense-related (DR) genes/TFBS: DRE/CRT /BF: CaERFLP1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 10 ATTTCATGGCCGACCTGCTTTTttttTcTT 39 (Mism.= 5) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 77 gGCCACGTGTaA 66 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00407 Up.Conf.Int. 1 Found 1 77 gGCCACGTGtAA 66 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 67 TaCACGTGgC 76 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 76 gCCACGTGTa 67 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 67 TACACGTGgc 76 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 67 TACACGTGgc 76 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 70 ACGTGGC 76 (Mism.= 0) TFBS AC: RSP01160//OS: tobacco (Nicotiana plumbaginifolia) /GENE: CAB/TFBS: G-box /BF: CG-1 Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 65 ATtAcACGTGGC 76 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 68 aCACGTGG 75 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 68 ACACGTGG 75 (Mism.= 0) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 129 ATACGTGT 136 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 69 CACGTGGC 76 (Mism.= 0) TFBS AC: RSP01702//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 137 tACACGTATT 128 (Mism.= 1) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 138 tTACACGTaTTA 127 (Mism.= 2) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 138 TTACACGTATtA 127 (Mism.= 1) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 76 GCCACGTGTa 67 (Mism.= 1) TFBS AC: RSP01837//OS: wheat (Triticum aestivum) /GENE: Synthetic oligonucleotides/TFBS: TaAIDFa BS /BF: TaAIDFa Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 17 GGCCGACCT 25 (Mism.= 0) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 67 tACACGTGgC 76 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 76 GcCACGTGTa 67 (Mism.= 2) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 66 TtACACGTGGCc 77 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 68 aCACGTGGCC 77 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 76 gCCACGTGTa 67 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 76 gcCACGTGTA 67 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 67 TACACGTGGC 76 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 67 TaCACGTGGC 76 (Mism.= 1) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 57 GTGGTTTTCA 48 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 67 tACACGTGGc 76 (Mism.= 2) TFBS AC: RSP02187//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp30/VI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 43 GAAGaAGAAAAAAAAAGcAGg 23 (Mism.= 3) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "+" Strand: Mean Exp. Number 0.00018 Up.Conf.Int. 1 Found 1 68 ACACGTGGC 76 (Mism.= 0) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 112 AAAATATCT 120 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 68 aCACGTGG 75 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 43 GAAGAAGAA 35 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 76 GCCACGTGTa 67 (Mism.= 1) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 67 tACACGTGGc 76 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 76 GcCACGTGtA 67 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00859 Up.Conf.Int. 1 Found 1 67 tACACGTGgC 76 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 67 TACACGTGgc 76 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 67 tACACGTGGc 76 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 76 GcCACGTGtA 67 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 67 tACACGTGGc 76 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 76 GcCACGTGtA 67 (Mism.= 2) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 112 AAAATATCT 120 (Mism.= 0) TFBS AC: RSP02656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 112 AAAATATCT 120 (Mism.= 0) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 67 TaCACGTgGC 76 (Mism.= 2) TFBS AC: RSP02719//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: MYBcore (DkANR) /BF: DkMyb2 Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 97 CTCGGTaATG 106 (Mism.= 1) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 112 AAAATATCT 120 (Mism.= 0) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 120 AGATATTTT 112 (Mism.= 0) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 120 AGATATTTT 112 (Mism.= 0) TFBS AC: RSP02828//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DRE/CRT /BF: AtERF71/HRE2 Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 11 TTTCATGGCCGACCTGC 27 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 70 ACGTGGC 76 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 67 tACACGTGgC 76 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 67 TACACGTGGC 76 (Mism.= 1) Totally 69 motifs of 64 different TFBSs have been found ____________________________________________________________ >PLPR0123..AC:J03919..OS:Glycine max..GENE:Aux28..PROD:auxin-induction related protein..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.22 T - 0.24 C - 0.22 TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 60 ACaCcCCTCCTC 71 (Mism.= 2) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 63 CCCCTCCTC 71 (Mism.= 0) TFBS AC: RSP00623//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: A2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 83 aTtaTTGCCACACAAATCAATTAACTGAATGCTTAGAGAGAG 124 (Mism.= 3) TFBS AC: RSP00625//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: A1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 147 AAGGTGATCATAGAGCATATTATAAGAGAGTGAAAACTAATGG 189 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 117 AGAGAGAGA 125 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 116 tAGAGAGAGAaAGAGgA 132 (Mism.= 3) TFBS AC: RSP01830//OS: rice (Oryza sativa) /GENE: KAR/TFBS: GAMYB BS (KAR) /BF: GAMYB Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 104 TAACTGAAT 112 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 2 132 tcCTCTtTCTCTCTCT 117 (Mism.= 3) 130 CTCTtTCTCTCTCTaa 115 (Mism.= 3) TFBS AC: RSP02550//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR1/TFBS: E0-1-1 /BF: CBNAC Motifs on "+" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 111 ATGCTTAG 118 (Mism.= 0) TFBS AC: RSP02978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLC/TFBS: ABI4 BS /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 88 TGCCACAC 95 (Mism.= 0) Totally 11 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0124..AC:J03920..OS:Glycine max..GENE:Aux22..PROD:auxin-induction related protein..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.10 T - 0.38 C - 0.28 TFBS AC: RSP00263//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Non /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00475 Up.Conf.Int. 1 Found 1 9 CATCCAACG 1 (Mism.= 0) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 144 AAAAAAGAGA 135 (Mism.= 0) TFBS AC: RSP01221//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: GARE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 40 gAACCACC 33 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00200 Up.Conf.Int. 1 Found 1 164 CTCTATATAT 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 179 CTtTATATAT 170 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 2 172 tAtAtAGAGAGAGAGAA 156 (Mism.= 3) 166 GAGAGAGAGAaAGtGAA 150 (Mism.= 2) TFBS AC: RSP01563//OS: wheat (Triticum aestivum) /GENE: H3 (TH012)/TFBS: HBP-2 BS /BF: WZF-1 Motifs on "-" Strand: Mean Exp. Number 0.00475 Up.Conf.Int. 1 Found 1 9 CATCCAACG 1 (Mism.= 0) TFBS AC: RSP01891//OS: Boea hygrometrica /GENE: BhGolS1/TFBS: W-box 2 /BF: BhWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 84 ATGTGACCGA 93 (Mism.= 1) TFBS AC: RSP02115//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: STRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 45 AGGGG 49 (Mism.= 0) TFBS AC: RSP02116//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: CCAAT element /BF: C/EBP Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 45 AGGGG 49 (Mism.= 0) TFBS AC: RSP02191//OS: tomato (Lycopersicon esculentum) /GENE: LeACS4/TFBS: CArG (LeACS4-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00935 Up.Conf.Int. 1 Found 1 71 CAATTGTGGG 62 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 2 152 CaCTtTCTCTCTCTCT 167 (Mism.= 2) 154 CTtTCTCTCTCTCTaT 169 (Mism.= 2) TFBS AC: RSP02494//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (7) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00414 Up.Conf.Int. 1 Found 1 38 ACCACC 33 (Mism.= 0) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 232 CACCAAAT 239 (Mism.= 0) TFBS AC: RSP02918//OS: pear (Pyrus bretschneideri) /GENE: PbUFGT1/TFBS: PbMYB10/PbMYB9 BS /BF: PbMYB10; PbMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00940 Up.Conf.Int. 1 Found 1 2 GTTGGA 7 (Mism.= 0) TFBS AC: RSP02975//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: O-box (oligo1) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00367 Up.Conf.Int. 1 Found 1 87 TgACCGACCAcT 98 (Mism.= 2) Totally 18 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0125..AC:X13306 X06334..OS:Triticum aestivum..GENE:LMW..PROD:mature LMWG-1D1 glutenin..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.42 G - 0.17 T - 0.22 C - 0.20 TFBS AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/TFBS: Box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 116 AGAATTATTAAA 127 (Mism.= 0) TFBS AC: RSP00645//OS: tobacco (Nicotiana tabacum) /GENE: prxC2/TFBS: box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 116 AGAATTATTAAA 127 (Mism.= 0) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 216 CCAAGCAACA 225 (Mism.= 0) TFBS AC: RSP00857//OS: maize (Zea mays) /GENE: H4C7/TFBS: NON /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 107 CCATCTGAAa 98 (Mism.= 1) TFBS AC: RSP01221//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: GARE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 157 gAACCACC 150 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01613//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-4 /BF: GmDof4 Motifs on "-" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 134 CAtCAgCTTTAATAa 120 (Mism.= 3) TFBS AC: RSP01894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PKp-beta1/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 44 CAAAAGTACGCTTGT 58 (Mism.= 3) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 1) TFBS AC: RSP02494//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (7) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 155 ACCACC 150 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 166 CTATAAATaG 175 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 0) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0126..AC:AY052152..OS:Triticum aestivum..GENE:HMW glutenin..PROD:HMW glutenin..[ -200: +51]..CDS:+63..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.11 T - 0.30 C - 0.31 TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 231 ATAGAgATCAA 241 (Mism.= 1) TFBS AC: RSP00129//OS: maize (Zea mays) /GENE: Bronze2/TFBS: R-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00948 Up.Conf.Int. 1 Found 1 134 CACGAC 129 (Mism.= 0) TFBS AC: RSP00301//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: PROL box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 18 TGCAAAG 24 (Mism.= 0) TFBS AC: RSP00850//OS: maize (Zea mays) /GENE: H4C7/TFBS: CAT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00948 Up.Conf.Int. 1 Found 1 65 GCCAAC 60 (Mism.= 0) TFBS AC: RSP00882//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: Pb 3 /BF: PBF Motifs on "+" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 18 TGCAAAG 24 (Mism.= 0) TFBS AC: RSP01080//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L2 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00145 Up.Conf.Int. 1 Found 1 119 ACTaACCTTCGT 130 (Mism.= 1) TFBS AC: RSP02090//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00193 Up.Conf.Int. 1 Found 1 27 gAGCTTTGCAA 17 (Mism.= 1) TFBS AC: RSP02142//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE2 /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00589 Up.Conf.Int. 1 Found 1 90 AAaGTCGGTT 81 (Mism.= 1) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0127..AC:X06441..OS:Glycine max..GENE:lbc3..PROD:leghaemoglobin ..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): -12 -9 -7 -5 -3 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.34 C - 0.14 TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "+" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 15 CTTAAATTATTTATTT 30 (Mism.= 0) TFBS AC: RSP00285//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box P /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 100 CTCCAACAAgCCa 112 (Mism.= 2) TFBS AC: RSP00381//OS: soybean (Glycine max) /GENE: lbc3/TFBS: OSE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 52 GTTTTTGAAAAGATGATTGTCTCTTCACCAT 82 (Mism.= 0) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00808 Up.Conf.Int. 1 Found 1 142 CAGAATAA 135 (Mism.= 0) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00137 Up.Conf.Int. 1 Found 1 94 aCCCTCCTC 102 (Mism.= 1) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 124 tTATGTCTCT 115 (Mism.= 1) TFBS AC: RSP02106//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 68 TTGTCTCTT 76 (Mism.= 0) TFBS AC: RSP02110//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE region /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 58 GAAAAGATGATTGTCTCTT 76 --16-- 93 CACCCTC 99 (Mism.= 2/ 1) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0128..AC:AJ132750..OS:Eucalyptus gunnii..GENE:CYM..PROD:cinnamoyl-CoA reductase..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.32 C - 0.21 TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 120 CCCACCTACC 111 (Mism.= 0) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 120 CCCACCTACC 111 (Mism.= 0) TFBS AC: RSP00492//OS: maize (Zea mays) /GENE: Zc2/TFBS: Zc2 A/T-2 /BF: nuclear factor of apparent molecular mass 30 kDa Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 11 137 cTtTtTcccctTATATATATATATATATATATATATATATAT 178 (Mism.= 8) 139 tTtTcccctTATATATATATATATATATATATATATATATAT 180 (Mism.= 7) 141 tTcccctTATATATATATATATATATATATATATATATATAT 182 (Mism.= 6) 143 cccctTATATATATATATATATATATATATATATATATATAT 184 (Mism.= 5) 145 cctTATATATATATATATATATATATATATATATATATATAT 186 (Mism.= 3) 147 tTATATATATATATATATATATATATATATATATATATATgT 188 (Mism.= 2) 149 ATATATATATATATATATATATATATATATATATATATgTcT 190 (Mism.= 2) 151 ATATATATATATATATATATATATATATATATATATgTcTtg 192 (Mism.= 4) 153 ATATATATATATATATATATATATATATATATATgTcTtgAg 194 (Mism.= 5) 155 ATATATATATATATATATATATATATATATATgTcTtgAgtg 196 (Mism.= 7) 157 ATATATATATATATATATATATATATATATgTcTtgAgtgcT 198 (Mism.= 8) Motifs on "-" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 11 198 AgcacTcaAgAcATATATATATATATATATATATATATATAT 157 (Mism.= 8) 196 cacTcaAgAcATATATATATATATATATATATATATATATAT 155 (Mism.= 7) 194 cTcaAgAcATATATATATATATATATATATATATATATATAT 153 (Mism.= 5) 192 caAgAcATATATATATATATATATATATATATATATATATAT 151 (Mism.= 4) 190 AgAcATATATATATATATATATATATATATATATATATATAT 149 (Mism.= 2) 188 AcATATATATATATATATATATATATATATATATATATATAa 147 (Mism.= 2) 186 ATATATATATATATATATATATATATATATATATATATAagg 145 (Mism.= 3) 184 ATATATATATATATATATATATATATATATATATATAagggg 143 (Mism.= 5) 182 ATATATATATATATATATATATATATATATATATAaggggAa 141 (Mism.= 6) 180 ATATATATATATATATATATATATATATATATAaggggAaAa 139 (Mism.= 7) 178 ATATATATATATATATATATATATATATATAaggggAaAaAg 137 (Mism.= 8) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 11 66 AGAGAGAGA 58 (Mism.= 0) 64 AGAGAGAGA 56 (Mism.= 0) 62 AGAGAGAGA 54 (Mism.= 0) 60 AGAGAGAGA 52 (Mism.= 0) 58 AGAGAGAGA 50 (Mism.= 0) 56 AGAGAGAGA 48 (Mism.= 0) 54 AGAGAGAGA 46 (Mism.= 0) 52 AGAGAGAGA 44 (Mism.= 0) 50 AGAGAGAGA 42 (Mism.= 0) 48 AGAGAGAGA 40 (Mism.= 0) 46 AGAGAGAGA 38 (Mism.= 0) TFBS AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/TFBS: CLE-core /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 78 GTGGTCCT 85 (Mism.= 1) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 121 ACcCACCTACCG 110 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 9 67 aAGAGAGAGAGAGAGAg 51 (Mism.= 2) 65 GAGAGAGAGAGAGAGAg 49 (Mism.= 1) 63 GAGAGAGAGAGAGAGAg 47 (Mism.= 1) 61 GAGAGAGAGAGAGAGAg 45 (Mism.= 1) 59 GAGAGAGAGAGAGAGAg 43 (Mism.= 1) 57 GAGAGAGAGAGAGAGAg 41 (Mism.= 1) 55 GAGAGAGAGAGAGAGAg 39 (Mism.= 1) 53 GAGAGAGAGAGAGAGAg 37 (Mism.= 1) 51 GAGAGAGAGAGAGAGcA 35 (Mism.= 1) TFBS AC: RSP01453//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-I /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 117 ACCTACC 111 (Mism.= 0) TFBS AC: RSP01827//OS: rice (Oryza sativa); sorghum bicolor (Sorghum japonicum) /GENE: Os/Sb ga2ox1/TFBS: KNOX BS (Os/Sb ga2ox1) /BF: KNOX Motifs on "-" Strand: Mean Exp. Number 0.00226 Up.Conf.Int. 1 Found 1 222 TGACGGCTTGAT 211 (Mism.= 2) TFBS AC: RSP02018//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBa /BF: MYB Motifs on "-" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 118 CACCTACC 111 (Mism.= 0) TFBS AC: RSP02020//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: MYB BS /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 111 GGTAGGTG 118 (Mism.= 0) TFBS AC: RSP02334//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 8 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 117 ACCTACC 111 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 10 35 tgCTCTCTCTCTCTCT 50 (Mism.= 2) 37 CTCTCTCTCTCTCTCT 52 (Mism.= 0) 39 CTCTCTCTCTCTCTCT 54 (Mism.= 0) 41 CTCTCTCTCTCTCTCT 56 (Mism.= 0) 43 CTCTCTCTCTCTCTCT 58 (Mism.= 0) 45 CTCTCTCTCTCTCTCT 60 (Mism.= 0) 47 CTCTCTCTCTCTCTCT 62 (Mism.= 0) 49 CTCTCTCTCTCTCTCT 64 (Mism.= 0) 51 CTCTCTCTCTCTCTCT 66 (Mism.= 0) 53 CTCTCTCTCTCTCTta 68 (Mism.= 2) TFBS AC: RSP02421//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 39-42 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 90 GGGGAGC 96 (Mism.= 0) TFBS AC: RSP02587//OS: white spruce (Picea glauca [Moench] Voss) /GENE: Pg4CL/TFBS: AC-I /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 117 ACCTACC 111 (Mism.= 0) TFBS AC: RSP02588//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-I /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 117 ACCTACC 111 (Mism.= 0) TFBS AC: RSP02755//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS2 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 118 CACCTACC 111 (Mism.= 0) TFBS AC: RSP02757//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS2 (CCoAOMT1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 118 CACCTACC 111 (Mism.= 0) TFBS AC: RSP02811//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: AC element (EgCCR) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 111 GGTAGGTG 118 (Mism.= 0) TFBS AC: RSP02812//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 1 (EgCAD) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 111 GGTAGGTG 118 (Mism.= 0) TFBS AC: RSP02952//OS: maize (Zea mays) /GENE: SHR2/TFBS: E2F1 BS /BF: E2F1 Motifs on "-" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 100 ACCCGCTCCC 91 (Mism.= 2) Totally 69 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0129..AC:Y07648..OS:Arabidopsis thaliana..GENE:nit1..PROD:nitrilase..[ -200: +51]..TSS+4309 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.24 C - 0.20 TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00107 Up.Conf.Int. 1 Found 1 61 CCACGTGGgC 70 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00107 Up.Conf.Int. 1 Found 1 61 CCACGTGGgC 70 (Mism.= 1) TFBS AC: RSP00495//OS: wheat (Triticum aestivum) /GENE: LMW-glutenin/TFBS: P-box 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 24 TGTAAAGT 17 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 69 cCCACGTGGt 60 (Mism.= 2) TFBS AC: RSP00686//OS: barley (Hordeum vulgare) /GENE: C-hordein/TFBS: E-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 24 TGTAAAGT 17 (Mism.= 0) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 61 CCACGTGG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 68 CCACGTGG 61 (Mism.= 0) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 68 CCACGTgG 61 (Mism.= 1) TFBS AC: RSP01139//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 66 ACGTGGTTT 58 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 167 gTCTATATAT 176 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 61 CCACGTGG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 68 CCACGTGG 61 (Mism.= 0) TFBS AC: RSP01714//OS: Arabidopsis (Arabidopsis thaliana) /GENE: REH1/PIN3 (At1g70940)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 144 GGTCACGTtTaT 133 (Mism.= 2) TFBS AC: RSP01790//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNAT2/TFBS: AS1-AS2 BS II (KNAT2 B) /BF: AS1-AS2 Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 229 GAGTTGATA 237 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00542 Up.Conf.Int. 1 Found 1 61 CCACGTGGgC 70 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 68 CCACGTGGtt 59 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 60 ACCACGTGgg 69 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 60 aCCACGTGGg 69 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00479 Up.Conf.Int. 1 Found 1 69 cCCACGTGGt 60 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 69 CcCACGTGGt 60 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 61 CCACGTGG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 68 CCACGTGG 61 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00631 Up.Conf.Int. 1 Found 1 61 CCACGTGG 68 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 68 cCACGTGG 61 (Mism.= 1) TFBS AC: RSP02332//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 6 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 7 ACCTACT 1 (Mism.= 0) TFBS AC: RSP02408//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS1 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 52 CTCTGCAT 45 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 69 cCCACGTGgT 60 (Mism.= 2) TFBS AC: RSP02527//OS: rice (Oryza sativa, japonica) /GENE: LOG/TFBS: GTAC-motif /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 242 TAGTACTA 249 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 249 TAGTACTA 242 (Mism.= 0) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 67 CACGTGGT 60 (Mism.= 0) TFBS AC: RSP02675//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: GATA element /BF: Unknown GATA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00971 Up.Conf.Int. 1 Found 1 229 GAgTtGATATGT 240 (Mism.= 2) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 61 CCACGTGG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 68 CCACGTGG 61 (Mism.= 0) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 60 AcCACGTGGg 69 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 69 CcCACGTGGT 60 (Mism.= 1) Totally 35 motifs of 27 different TFBSs have been found ____________________________________________________________ >PLPR0130..AC:AJ001725..OS:Betula pendula..GENE:NR..PROD:nitrate-reductase..[ -200: +51]..CDS:+115..TSS+1536 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.30 C - 0.20 TFBS AC: RSP00006//OS: soybean (Glycine max) /GENE: GS15/TFBS: ATRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 34 AAATTtgTTTATAT 47 (Mism.= 2) TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 147 ACaCGTcTCCTC 158 (Mism.= 2) TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 147 ACaCGtCTCCTC 158 (Mism.= 2) TFBS AC: RSP00112//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00472 Up.Conf.Int. 1 Found 1 125 TGACGTAA 132 (Mism.= 0) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 161 CCACGaGGCC 170 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 161 CCACGaGGCC 170 (Mism.= 1) TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "-" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 130 ACGTCATAGt 121 (Mism.= 1) TFBS AC: RSP00727//OS: tobacco (Nicotiana tabacum) /GENE: Ubi.U4/TFBS: U-box /BF: unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00929 Up.Conf.Int. 1 Found 1 20 GCTTGAC 26 (Mism.= 0) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00991 Up.Conf.Int. 1 Found 1 152 ACGTGTC 146 (Mism.= 0) TFBS AC: RSP01217//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL2 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00463 Up.Conf.Int. 1 Found 1 120 CCCATCTAAGTA 109 (Mism.= 2) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 170 CTaTATATAT 179 (Mism.= 1) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00773 Up.Conf.Int. 1 Found 1 137 TACGatTACGTC 126 (Mism.= 2) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 19 TTTCACTT 12 (Mism.= 0) TFBS AC: RSP01657//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MP/ARF5 (At1g19850)/TFBS: C/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 123 TaTGACGTAAtC 134 (Mism.= 2) TFBS AC: RSP01661//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CKX5/6 (At1g75450)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 123 TATGACGTaATC 134 (Mism.= 1) TFBS AC: RSP01664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARR9 (At3g57040)/TFBS: C-box (2) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 123 tATGACGTaATC 134 (Mism.= 2) TFBS AC: RSP01665//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF12 (At1g28360)/TFBS: C/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 123 taTGACGTAATC 134 (Mism.= 2) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00991 Up.Conf.Int. 1 Found 1 152 ACGTGTC 146 (Mism.= 0) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 152 TCTCCTCCcC 161 (Mism.= 1) Totally 19 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0131..AC:AF486816..OS:Nicotiana benthamiana..GENE:PCNA..PROD:proliferating cell nuclear antigen..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.15 T - 0.26 C - 0.34 TFBS AC: RSP00015//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtCDC6/TFBS: E2F1-BE /BF: E2F1 Motifs on "-" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 86 TTTCCCGC 79 (Mism.= 0) TFBS AC: RSP00165//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fa /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 86 TTTCCCGC 79 (Mism.= 0) TFBS AC: RSP00298//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-1 /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 86 TTTCCCGC 79 (Mism.= 0) TFBS AC: RSP00299//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-2 /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 117 ATTCCCGCCAAT 128 (Mism.= 0) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 52 ATAtCACTGgGT 41 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 106 TGCCgaGTGGAA 95 (Mism.= 2) TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "-" Strand: Mean Exp. Number 0.00258 Up.Conf.Int. 1 Found 1 86 TtTCCCGCC 78 (Mism.= 1) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 87 AATATTTTTTCca 99 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 92 AATATTTTTcCcG 80 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 220 GAGAGAGAagtAGAGAA 204 (Mism.= 3) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "+" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 176 AAACCCTA 183 (Mism.= 0) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00603 Up.Conf.Int. 1 Found 1 76 CTATTTTGGG 67 (Mism.= 1) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 183 TAGGGTTT 176 (Mism.= 0) TFBS AC: RSP02318//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CENH3/TFBS: E2F BS /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 79 GCGGGAAA 86 (Mism.= 0) TFBS AC: RSP02405//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ASF1A/TFBS: E2F BS (-330) /BF: E2Fa/DPa; E2Fe; E2Ff Motifs on "+" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 120 CCCGCCAAT 128 (Mism.= 0) TFBS AC: RSP02406//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ASF1B/TFBS: E2F BS (-276) /BF: E2Fa/DPa; E2Fe; E2Ff Motifs on "+" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 117 atTCCCGCCAAT 128 (Mism.= 2) TFBS AC: RSP02786//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P1/GT-3 box /BF: GT-4 Motifs on "+" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 80 CGGGaaAAATA 90 (Mism.= 2) TFBS AC: RSP02951//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/2 /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 1 118 TTCCCGCCA 126 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 85 TTCCCGCCT 77 (Mism.= 1) Totally 19 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0132..AC:X03820..OS:Petunia hybrida..GENE:rbcS (ssu8)..PROD:ribulose 1,5-bisphosphate carboxylase..[ -200: +51]..CDS:+55..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.20 T - 0.31 C - 0.13 TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 83 aTAATCCAATGG 94 (Mism.= 1) TFBS AC: RSP00242//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: AG1 /BF: LFU Motifs on "+" Strand: Mean Exp. Number 0.00143 Up.Conf.Int. 1 Found 1 85 AATCCAATGGTTA 97 (Mism.= 0) TFBS AC: RSP00545//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 15/GT-1 N2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 121 AcTAACCTCATCTtgGAG 104 (Mism.= 3) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 108 AAGATGAGGTTaGtT 122 (Mism.= 2) TFBS AC: RSP00548//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: CAAT/13 Y /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 98 cTAACCATTGG 88 (Mism.= 1) TFBS AC: RSP00549//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00039 Up.Conf.Int. 1 Found 1 83 ATAATCCAATGGTTAgctTT 102 (Mism.= 3) TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 90 TGGATTATGTG 80 (Mism.= 0) TFBS AC: RSP00562//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 9/10 X /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 87 ATTaTGTGGTTCTTGatA 70 (Mism.= 3) TFBS AC: RSP00578//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: LRE-TATA M1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00015 Up.Conf.Int. 1 Found 1 155 AAAACCTTATCATTATATAAAG 176 (Mism.= 0) TFBS AC: RSP00579//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: LRE-TATA M2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 170 ATAATGATAAGGTTTTt 154 (Mism.= 1) TFBS AC: RSP00581//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: LRE-TATA LL1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 159 CCTTATCATTATATA 173 (Mism.= 0) TFBS AC: RSP00582//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: LRE-TATA LL2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 170 ATAATGATAAGGTTTtt 154 (Mism.= 2) TFBS AC: RSP00612//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: CAAT X /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 37 CCAACCTTTCATgTGTgG 54 (Mism.= 2) TFBS AC: RSP00627//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: GA-1 SITE /BF: GAF-1 Motifs on "-" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 167 ATGATAAGG 159 (Mism.= 0) TFBS AC: RSP00631//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CII /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 83 TGTGGTTcTTGaT 71 (Mism.= 2) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 71 ATCAAgAACC 80 (Mism.= 1) TFBS AC: RSP00960//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: MYB BS /BF: HvGAMYB Motifs on "-" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 123 CAACTAAC 116 (Mism.= 0) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "+" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 156 AAACcTTATCATTa 169 (Mism.= 2) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 51 CAcATGAAAG 42 (Mism.= 1) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 36 TCCAACCtTtCA 47 (Mism.= 2) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 94 CCATTGGATTAT 83 (Mism.= 2) TFBS AC: RSP02090//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 223 AAGCTTTGgAA 233 (Mism.= 1) TFBS AC: RSP02092//OS: Petunia hybrida /GENE: SSU8/TFBS: GT-motif (LRE) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 49 GTGTGGATATTAAA 62 (Mism.= 0) TFBS AC: RSP02094//OS: tobacco (Nicotiana tabacum) /GENE: Ntss23/TFBS: GT-motif (LRE) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 49 GTGTGGATATTAAa 62 (Mism.= 1) TFBS AC: RSP02715//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: AC (DkANR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 100 AGCtAACCAT 91 (Mism.= 1) TFBS AC: RSP02995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUS4/TFBS: AtIDD8 BS /BF: AtIDD8 Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 125 tTTTTGTCC 133 (Mism.= 1) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 126 TTTTGTCC 133 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 126 TTTTGTCC 133 (Mism.= 0) Totally 28 motifs of 28 different TFBSs have been found ____________________________________________________________ >PLPR0133..AC:X03821..OS:Petunia hybrida..GENE:rbcS (ssu11A)..PROD:ribulose 1,5-bisphosphate carboxylase..[ -200: +51]..CDS:+67..TSS:201 (+1) # Alternative TSS(s): -2 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.19 T - 0.30 C - 0.18 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00904 Up.Conf.Int. 1 Found 1 17 cCACGTGGC 9 (Mism.= 1) TFBS AC: RSP00048//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: ABRE A2; ABRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 18 gCcACGTGGCGG 7 (Mism.= 2) TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 9 GCCaCGTGGC 18 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00073 Up.Conf.Int. 1 Found 1 18 GCCaCGTGGC 9 (Mism.= 1) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 12 ACGTGGCAC 20 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 15 ACGTGGCGG 7 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 9 GCCACGTGGC 18 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 18 GCCACGTGGC 9 (Mism.= 0) TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 19 ACTATTTTTATG 30 (Mism.= 2) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 10 CCACGTGGCa 19 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 17 CCACGTGGCg 8 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 10 CCACGTGGCa 19 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 17 CCACGTGGCg 8 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 11 CACGTGGC 18 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 16 CACGTGGC 9 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 9 GcCACGTGGC 18 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 18 GcCACGTGGC 9 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 8 cGcCACGTGGCA 19 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 19 TGcCACGTGGCg 8 (Mism.= 2) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00763 Up.Conf.Int. 1 Found 1 88 aTAATCCAATGG 99 (Mism.= 1) TFBS AC: RSP00242//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: AG1 /BF: LFU Motifs on "+" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 1 90 AATCCAATGGTTA 102 (Mism.= 0) TFBS AC: RSP00274//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 1 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 9 GCCACGTGGC 18 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 18 GCCACGTGGC 9 (Mism.= 0) TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "+" Strand: Mean Exp. Number 0.00108 Up.Conf.Int. 1 Found 1 11 CACgTGGCACT 21 (Mism.= 1) TFBS AC: RSP00342//OS: spinach (Spinacia oleracea) /GENE: rps1/TFBS: S1F BS3 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00142 Up.Conf.Int. 1 Found 1 37 ATCTTTTtcCTAACcTT 53 (Mism.= 3) TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 9 GCCACGTgGCaC 20 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 18 GCCACGTgGCGg 7 (Mism.= 2) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 113 AAGATGAGGcTTGtT 127 (Mism.= 2) TFBS AC: RSP00548//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: CAAT/13 Y /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 103 GTAACCATTGG 93 (Mism.= 0) TFBS AC: RSP00549//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 88 ATAATCCAATGGTTAcaaTT 107 (Mism.= 3) TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 95 TGGATTATGTG 85 (Mism.= 0) TFBS AC: RSP00578//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: LRE-TATA M1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00011 Up.Conf.Int. 1 Found 1 159 gAAAgCTTAaCATTATATAtAG 180 (Mism.= 4) TFBS AC: RSP00579//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: LRE-TATA M2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 174 ATAATGtTAAGcTTTcA 158 (Mism.= 3) TFBS AC: RSP00581//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: LRE-TATA LL1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00096 Up.Conf.Int. 1 Found 1 163 gCTTAaCATTATATA 177 (Mism.= 2) TFBS AC: RSP00582//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: LRE-TATA LL2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 174 ATAATGtTAAGcTTTCA 158 (Mism.= 2) TFBS AC: RSP00584//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: TSS MM /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 202 AACCCTCTTGAag 214 (Mism.= 2) TFBS AC: RSP00587//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: G-box D /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 4 cTTCCGcCACGTGGCACtaT 23 (Mism.= 4) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 9 GCCACGTGGc 18 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 18 GCCACGTGGc 9 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 10 CCACGTGG 17 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 17 CCACGTGG 10 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 11 CACGTGGC 18 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 16 CACGTGGC 9 (Mism.= 0) TFBS AC: RSP00748//OS: arabidopsis (Arabidopsis thaliana) /GENE: Pc/TFBS: PCbox1 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 108 GAATtGTAACcA 97 (Mism.= 2) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "+" Strand: Mean Exp. Number 0.00971 Up.Conf.Int. 1 Found 1 196 ATCAAtAACC 205 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 8 cGCCACGTGgCA 19 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 19 TGCCACGTGgCg 8 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 8 cGCCACGTGGcA 19 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 19 TGCCACGTGGcg 8 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 9 GcCACGTGgC 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 18 GcCACGTGgC 9 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00629 Up.Conf.Int. 1 Found 1 9 gCCACGTGgC 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 18 gCCACGTGgC 9 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 12 ACGTGGC 18 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 15 ACGTGGC 9 (Mism.= 0) TFBS AC: RSP01055//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: GT-3a Box III (2) /BF: GT-3a Motifs on "+" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 96 AtGGTTACAaT 106 (Mism.= 2) TFBS AC: RSP01149//OS: cucumber, Cucumis sativus /GENE: POR/TFBS: C-DP BS1 /BF: cytokinin-dependent protein Motifs on "-" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 38 ATATTAGTcATAa 26 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 9 GCCACGTGGC 18 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 18 GcCACGTGGC 9 (Mism.= 1) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 99 CCATTGGATTAT 88 (Mism.= 2) TFBS AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 50 CCTTCATGTGG 60 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 10 CCACGTGG 17 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 17 CCACGTGG 10 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 11 CACGTGGC 18 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 16 CACGTGGC 9 (Mism.= 0) TFBS AC: RSP01581//OS: tomato (Lycopersicon esculentum) /GENE: rbcS-1/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 9 GcCACGTGGCACt 21 (Mism.= 2) TFBS AC: RSP01591//OS: soybean (Glycine max) /GENE: SRS-4/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 9 gCCACGTGGCACT 21 (Mism.= 1) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 19 TGCCACGTGGcg 8 (Mism.= 2) TFBS AC: RSP01761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC13 (At1g32870)/TFBS: MRE (ANAC13) /BF: NSP1 Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 45 CCtAACCTTCaT 56 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 9 GCCACGTGgC 18 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 18 GCCACGTGGC 9 (Mism.= 1) TFBS AC: RSP01887//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS1 /BF: VSF-1 Motifs on "+" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 135 aTCCGTTaGATGTaG 149 (Mism.= 3) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 9 GcCACGTGgC 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 18 GcCACGTGgC 9 (Mism.= 2) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 8 cGcCACGTGGCA 19 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 19 TGcCACGTGGCg 8 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 10 CCACGTGGCa 19 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 17 CCACGTGGCg 8 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00672 Up.Conf.Int. 1 Found 1 9 gCCACGTGgC 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 18 gCCACGTGgC 9 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 9 gCCACGTGGC 18 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 18 gCCACGTGGC 9 (Mism.= 1) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 168 ACATTATATA 177 (Mism.= 0) TFBS AC: RSP02093//OS: Petunia hybrida /GENE: SSU11/TFBS: GT-motif (LRE) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 55 ATGTGGCCATTAAT 68 (Mism.= 0) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 10 CCACGTGG 17 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 17 CCACGTGG 10 (Mism.= 0) TFBS AC: RSP02304//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS1 (W) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00698 Up.Conf.Int. 1 Found 1 25 TTTaTGACTAaT 36 (Mism.= 2) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 1 10 cCACGTGG 17 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00851 Up.Conf.Int. 1 Found 1 17 CCACGTGG 10 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 9 GCCACGTGgc 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 18 GCCACGTGGC 9 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 9 GcCACGTGGc 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00629 Up.Conf.Int. 1 Found 1 18 GcCACGTGGc 9 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 9 GcCACGTGGc 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00629 Up.Conf.Int. 1 Found 1 18 GcCACGTGGc 9 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 18 GcCACGTGGc 9 (Mism.= 2) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 10 CCACGTGG 17 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 17 CCACGTGG 10 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 12 ACGTGGC 18 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 15 ACGTGGC 9 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 9 GcCACGTGgC 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 18 GcCACGTGgC 9 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 9 gcCACGTGGC 18 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 18 gcCACGTGGC 9 (Mism.= 2) TFBS AC: RSP02947//OS: maize (Zea mays) /GENE: NAD(P)-binding protein/TFBS: GBF6 BS/1 /BF: GBF6 Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 15 ACGTGGCGg 7 (Mism.= 1) Totally 105 motifs of 69 different TFBSs have been found ____________________________________________________________ >PLPR0134..AC:X03677..OS:Vicia faba..GENE:LeB4..PROD:legumin B..[ -200: +51]..CDS:+58..TSS+2698 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.14 T - 0.29 C - 0.29 TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 102 CATGCATG 109 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 109 CATGCATG 102 (Mism.= 0) TFBS AC: RSP00282//OS: rice (Oryza sativa), Oryza sativa /GENE: Amy3D/TFBS: Amylase-element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00900 Up.Conf.Int. 1 Found 1 8 TATCCAT 2 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 136 ACACGTG 142 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 143 ACACGTG 137 (Mism.= 0) TFBS AC: RSP00675//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: Box I /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00900 Up.Conf.Int. 1 Found 1 8 TATCCAT 2 (Mism.= 0) TFBS AC: RSP00872//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 126 TGTGTGACAT 117 (Mism.= 0) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 101 cCATGCATGC 110 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 110 GCATGCATGG 101 (Mism.= 1) TFBS AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE III /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00414 Up.Conf.Int. 1 Found 1 109 CATGCaTGGC 100 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 102 CATGCATG 109 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 109 CATGCATG 102 (Mism.= 0) TFBS AC: RSP01170//OS: GlVicia faba /GENE: PsLegB/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 94 TCCATAGCCATGCATGCTGAAGAATG 119 (Mism.= 0) TFBS AC: RSP01171//OS: soybean (Glycine max) /GENE: GmGly/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 94 TCCATAGCCATGCATgCTGAAGAATG 119 (Mism.= 1) TFBS AC: RSP01172//OS: pea (Pisum sativum) /GENE: PsLegA/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 94 TCCATAGCCATGCAtGCTGaAGAATG 119 (Mism.= 2) TFBS AC: RSP01173//OS: pea (Pisum sativum) /GENE: PsLegJ/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 95 cCaTAGCCATGCATGCTGAAgAATG 119 (Mism.= 3) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 136 ACACGTGT 143 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 143 ACACGTGT 136 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 102 CATGCATG 109 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 109 CATGCATG 102 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 134 TCACAcGTGT 143 (Mism.= 1) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 134 tcACACGTGTTA 145 (Mism.= 2) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 134 TCACACGTGTtA 145 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 145 TaACACGTGTGA 134 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 135 cACACGTGTt 144 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 144 AACACGTGTG 135 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 144 AaCACGTGTg 135 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 144 AACACGTGTg 135 (Mism.= 1) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 144 AACACGTGtg 135 (Mism.= 2) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 104 TGCATGCTG 112 (Mism.= 1) TFBS AC: RSP02277//OS: Eucalyptus gunnii /GENE: EgMYB103/TFBS: SNBE (EgMYB103) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 20 TcAtCTATCTGTGAAGAAt 38 (Mism.= 3) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "-" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 145 tAACACGTGTgA 134 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 136 ACACGTGT 143 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 143 ACACGTGT 136 (Mism.= 0) TFBS AC: RSP02398//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: ABRE /BF: ThABF8 Motifs on "-" Strand: Mean Exp. Number 0.00551 Up.Conf.Int. 1 Found 1 130 AACGTGTG 123 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 135 caCACGTGTT 144 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 135 CACACGTGTt 144 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 144 aACACGTGTg 135 (Mism.= 2) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 136 ACACGTGTTA 145 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 135 cACACGTGTT 144 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 135 cACACGTGTT 144 (Mism.= 1) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 102 CATGCATG 109 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 109 CATGCATG 102 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 102 CATGCATG 109 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 109 CATGCATG 102 (Mism.= 0) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 146 CTCTCTCAC 154 (Mism.= 0) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 144 AACACGTGtg 135 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 135 CaCACGTGtT 144 (Mism.= 2) Totally 48 motifs of 36 different TFBSs have been found ____________________________________________________________ >PLPR0135..AC:X52908..OS:Ricinus communis..GENE:ricin..PROD:toxic lectin..[ -200: +51]..CDS:+36..TSS:201 (+1) # Alternative TSS(s): -2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.40 C - 0.14 TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "+" Strand: Mean Exp. Number 0.00768 Up.Conf.Int. 1 Found 1 86 AgTTATTTTTATT 98 (Mism.= 1) TFBS AC: RSP00231//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CCAAT box 1 /BF: unknown Motifs on "+" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 5 CCAATCA 11 (Mism.= 0) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 4 ACCAATCAa 12 (Mism.= 1) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 4 ACCAATCAa 12 (Mism.= 1) TFBS AC: RSP01977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(D) /BF: EIN3/EIL1 Motifs on "+" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 62 ATGCATCT 69 (Mism.= 0) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 134 ATTTTTTTAT 125 (Mism.= 0) TFBS AC: RSP02209//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: P1BS (SmPT4) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 34 GCATATTC 41 (Mism.= 0) TFBS AC: RSP02733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS3/TFBS: P1BS /BF: PHR1 Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 41 GAATATGC 34 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0136..AC:X03103..OS:Hordeum vulgare..GENE:B1 hordein..PROD:mature B1 hordein (aa 1-274)..[ -200: +51]..CDS:+53..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.24 C - 0.21 TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 222 CCAAGCAACA 231 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00820 Up.Conf.Int. 1 Found 1 149 GGAaAGAGA 157 (Mism.= 1) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 68 CAAACGTACt 59 (Mism.= 1) TFBS AC: RSP01153//OS: maize (Zea mays) /GENE: Em/TFBS: Em1c /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 68 CAAACGTACt 59 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 172 CTATAAATA 180 (Mism.= 0) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "-" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 67 AAACGTaCtTTT 56 (Mism.= 2) TFBS AC: RSP01894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PKp-beta1/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 55 CAAAAGTACGttTgT 69 (Mism.= 3) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 181 CTATTTATAG 172 (Mism.= 1) TFBS AC: RSP02410//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS3 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 2 ATACTTTG 9 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 172 CTATAAATaG 181 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 181 CTATTTATAG 172 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0137..AC:AB048395..OS:Arabidopsis thaliana..GENE:Adh..PROD:alcohol dehydrogenase..[ -200: +51]..CDS:+60..TSS+2345 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.29 C - 0.23 TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00993 Up.Conf.Int. 1 Found 1 200 AgAAAAGAGA 191 (Mism.= 1) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 18 CCACTTG 12 (Mism.= 0) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 226 aAAAgAtCAAAAGCAA 241 (Mism.= 3) TFBS AC: RSP00648//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C3-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 229 AGATcAAAAGcAAgTTC 245 (Mism.= 3) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 10 GCCAAGTGGA 19 (Mism.= 0) TFBS AC: RSP00685//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 3 TAGCAACGCCAAGTGGAAAGAG 24 (Mism.= 0) TFBS AC: RSP00717//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: ARE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 40 GgcAAACCAAATACGCCCCT 59 (Mism.= 2) TFBS AC: RSP00720//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: "in vivo footprint" /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 7 AACGCCAAGTGGAAAGAGCGTTCGAG 32 (Mism.= 0) TFBS AC: RSP00749//OS: Catharanthus roseus /GENE: STR/TFBS: BN /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 132 cTTTTGTAATTA 143 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00545 Up.Conf.Int. 1 Found 1 95 cTTTTGTAATTA 84 (Mism.= 1) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 9 cGCCAaGTGGAA 20 (Mism.= 2) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 19 TCCACTTGg 11 (Mism.= 1) TFBS AC: RSP01985//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Alfin1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 131 CGCCACT 125 (Mism.= 0) TFBS AC: RSP02076//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS2 /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 9 CGCCAAGt 16 (Mism.= 1) TFBS AC: RSP02279//OS: rice (Oryza sativa) /GENE: OsLKR/SDH/TFBS: Pb2 /BF: RPBF Motifs on "+" Strand: Mean Exp. Number 0.00727 Up.Conf.Int. 1 Found 1 16 TGGAAAG 22 (Mism.= 0) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 18 CCACTTG 12 (Mism.= 0) Totally 16 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0138..AC:X04334..OS:Pisum sativum..GENE:rbcS-3C..PROD:ribulose 1.5-bisphosphate carboxylase (RBC)..[ -200: +51]..CDS: +8..TSS:201 (+1) # Alternative TSS(s): -6 -4 -2 |Taxon: Dicot |Promote Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.33 C - 0.22 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00949 Up.Conf.Int. 1 Found 1 15 cCACGTGGC 23 (Mism.= 1) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 17 ACGTGGCAC 25 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 14 tCCACGTGGC 23 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 23 GCCACGTGGa 14 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 15 CCACGTGGCa 24 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 15 CCACGTGGCa 24 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 16 CACGTGGC 23 (Mism.= 0) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 14 TCCACGTgGC 23 (Mism.= 1) TFBS AC: RSP00205//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 78 GTGTGGTTAATATG 91 (Mism.= 0) TFBS AC: RSP00228//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 104 ATCATTTTCACa 115 (Mism.= 1) TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 16 CACgTGGCACT 26 (Mism.= 1) TFBS AC: RSP00333//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: S2 /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 50 CCATACATT 42 (Mism.= 0) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 14 TCCACGTGgC 23 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 23 GCCACGTGGA 14 (Mism.= 0) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 23 GCCAcGTGGA 14 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 15 CCACGTGG 22 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 22 CCACGTGG 15 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 16 CACGTGGC 23 (Mism.= 0) TFBS AC: RSP00784//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 8 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 14 TCCACGTGGC 23 (Mism.= 0) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 24 TGCCACGTGGAt 13 (Mism.= 1) TFBS AC: RSP00942//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 78 GTGTGGTTAATATGG 92 (Mism.= 0) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 14 TCCACGTGgC 23 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 17 ACGTGGC 23 (Mism.= 0) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 124 CCATTGGTATAC 135 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 130 CCAATGGTTTTG 119 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 15 CCACGTGG 22 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 22 CCACGTGG 15 (Mism.= 0) TFBS AC: RSP01333//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Box II, wild) /BF: BGTF Motifs on "+" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 77 cGTGTGGTTAATATG 91 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00419 Up.Conf.Int. 1 Found 1 16 CACGTGGC 23 (Mism.= 0) TFBS AC: RSP01584//OS: tobacco (Nicotiana tabacum) /GENE: Ntss-23/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 14 TcCACGTGGCACt 26 (Mism.= 2) TFBS AC: RSP01587//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS-8B/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 14 TcCACGTGGCACt 26 (Mism.= 2) TFBS AC: RSP01589//OS: soybean (Glycine max) /GENE: SRS-1/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00011 Up.Conf.Int. 1 Found 1 14 TCCACGTGgCACt 26 (Mism.= 2) TFBS AC: RSP01591//OS: soybean (Glycine max) /GENE: SRS-4/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 14 TCCACGTGGCACT 26 (Mism.= 0) TFBS AC: RSP01593//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00018 Up.Conf.Int. 1 Found 1 14 TcCACGTGGCAc 25 (Mism.= 2) TFBS AC: RSP01595//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box II /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 78 GTGTGGTTAATATGG 92 (Mism.= 0) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 13 ATCCACGTGgCa 24 (Mism.= 2) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 24 TGCCACGTGGaT 13 (Mism.= 1) TFBS AC: RSP01809//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GT-1bx /BF: GmGT-2A Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 78 GTGTGGTTAATATG 91 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 14 tCCACGTGgC 23 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 23 GCCACGTGga 14 (Mism.= 2) TFBS AC: RSP01925//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II-BOX III /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 78 GTGTGGTTAATATG 91 --12-- 104 ATCATTTTCACa 115 (Mism.= 0/ 1) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 15 CCACGTGGCa 24 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00611 Up.Conf.Int. 1 Found 1 22 CCACGTGGat 13 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 14 tCCACGTGgC 23 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 14 TCCACGTGGC 23 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 23 gCCACGTGGa 14 (Mism.= 2) TFBS AC: RSP02087//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 78 GTGTGGTTAATATG 91 (Mism.= 0) TFBS AC: RSP02088//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00723 Up.Conf.Int. 1 Found 1 104 ATCATTTTCAC 114 (Mism.= 0) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 158 ACATTATATA 167 (Mism.= 0) TFBS AC: RSP02090//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 177 AAGCTTTGCAA 187 (Mism.= 0) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 15 CCACGTGG 22 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 22 CCACGTGG 15 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00773 Up.Conf.Int. 1 Found 1 15 CCACGTGG 22 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 23 GCCACGTGga 14 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 23 GcCACGTGGA 14 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 23 GcCACGTGGA 14 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 23 GcCACGTGGA 14 (Mism.= 1) TFBS AC: RSP02575//OS: Tamarix androssowii /GENE: TaeIF5A1/TFBS: W-box /BF: TaWRKY; TaRAV Motifs on "-" Strand: Mean Exp. Number 0.00592 Up.Conf.Int. 1 Found 1 247 cGGCTGACT 239 (Mism.= 1) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 15 CCACGTGG 22 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 22 CCACGTGG 15 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 17 ACGTGGC 23 (Mism.= 0) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 14 tcCACGTGGC 23 (Mism.= 2) Totally 62 motifs of 53 different TFBSs have been found ____________________________________________________________ >PLPR0139..AC:X02382..OS:Zea mays..GENE:sucrose synthase,EC 2.4.1.13..PROD:sucrose synthase..[ -200: +51]..TSS+1142 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.19 G - 0.22 T - 0.27 C - 0.32 TFBS AC: RSP00857//OS: maize (Zea mays) /GENE: H4C7/TFBS: NON /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 109 CCATCTGcAC 118 (Mism.= 1) TFBS AC: RSP01174//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 1 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 184 CCTCTCCCGTC 194 (Mism.= 0) TFBS AC: RSP01175//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 2 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 161 AGCTGCCCGTC 171 (Mism.= 0) TFBS AC: RSP01176//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 3 /BF: Zmhox1a Motifs on "-" Strand: Mean Exp. Number 0.00106 Up.Conf.Int. 1 Found 1 164 AGCTGCTCCTA 154 (Mism.= 0) TFBS AC: RSP01297//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Inr element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 9 cGCCATCAG 17 (Mism.= 1) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00792 Up.Conf.Int. 1 Found 1 102 TCCACGT 96 (Mism.= 0) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 171 CTATTTATTG 180 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0140..AC:X02408..OS:Phaseolus vulgaris..GENE:dlec1..PROD:erythroagglutinating phytohemagglutinin..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): -8 -6 -4 -2 |Taxon: Dicot |Promoter: TA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.37 C - 0.16 TFBS AC: RSP00537//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: TSS CC /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00899 Up.Conf.Int. 1 Found 1 9 AACTAATTATTTCAT 23 (Mism.= 2) TFBS AC: RSP00689//OS: barley (Hordeum vulgare) /GENE: C-hordein/TFBS: n+e element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 124 AaGAaTcCATAAAGTAG 140 (Mism.= 3) TFBS AC: RSP00710//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: AT1-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 12 TAATTATTTCaTA 24 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00770 Up.Conf.Int. 1 Found 3 139 AGAGAGAGA 147 (Mism.= 0) 141 AGAGAGAGA 149 (Mism.= 0) 177 AGAGAGtGA 185 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 2 139 aGAGAGAGA 147 (Mism.= 1) 141 aGAGAGAGA 149 (Mism.= 1) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 41 GATGACGTGT 50 (Mism.= 1) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 41 GATGACGTGT 50 (Mism.= 0) TFBS AC: RSP01123//OS: tomato (Lycopersicon esculentum) /GENE: Synthetic oligonucleotides/TFBS: RBSS6.1 /BF: ABZ1 Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 40 tGATGACGTGTAtG 53 (Mism.= 2) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00626 Up.Conf.Int. 1 Found 1 218 CCAACTtACTCt 229 (Mism.= 2) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 43 TGACGTGT 50 (Mism.= 0) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 51 TaCACGTCAT 42 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 138 tAGAGAGAGAGAGtGcA 154 (Mism.= 3) TFBS AC: RSP01312//OS: soybean (Glycine max) /GENE: 11S A2B1a/TFBS: Regulatory Motif 2 /BF: unknown seed embryo nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00220 Up.Conf.Int. 1 Found 1 12 TAATTATTTCaTAtT 26 (Mism.= 2) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 131 gGATtCTTTTtTCTT 117 (Mism.= 3) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "+" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 41 GATGACGTGT 50 (Mism.= 0) TFBS AC: RSP01658//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 41 GATGACGTGTat 52 (Mism.= 2) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 3 154 tgCaCTCTCTCTCTCT 139 (Mism.= 3) 152 CaCTCTCTCTCTCTac 137 (Mism.= 3) 150 CTCTCTCTCTCTactT 135 (Mism.= 3) Totally 22 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0141..AC:K03289..OS:Phaseolus vulgaris..GENE:dlec2..PROD:dlec2 mRNA..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.17 T - 0.29 C - 0.33 TFBS AC: RSP00085//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGL3-BE /BF: AGL3 Motifs on "+" Strand: Mean Exp. Number 0.00624 Up.Conf.Int. 1 Found 1 167 TcTCTATAAATAGAgA 182 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00624 Up.Conf.Int. 1 Found 1 182 TcTCTATTTATAGAgA 167 (Mism.= 2) TFBS AC: RSP00104//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 219 CCATGTA 213 (Mism.= 0) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 80 CATGCATG 87 (Mism.= 0) 84 CATGCATG 91 (Mism.= 0) 88 CATGCATG 95 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 95 CATGCATG 88 (Mism.= 0) 91 CATGCATG 84 (Mism.= 0) 87 CATGCATG 80 (Mism.= 0) TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 2 38 GCCACCTC 45 (Mism.= 0) 98 GCCACCTC 105 (Mism.= 0) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 2 38 GCCACCTCAGCT 49 (Mism.= 0) 98 GCCACCTCAGCT 109 (Mism.= 0) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 2 38 GCCACcTCAG 47 (Mism.= 1) 98 GCCACcTCAG 107 (Mism.= 1) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 185 TTCTCTCTatT 175 (Mism.= 2) TFBS AC: RSP00947//OS: rice (Oryza sativa), Oryza sativa /GENE: PHYA/TFBS: GT1-bx /BF: GT-2 Motifs on "+" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 195 GGTTAAT 201 (Mism.= 0) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 3 79 cCATGCATGC 88 (Mism.= 1) 83 GCATGCATGC 92 (Mism.= 0) 87 GCATGCATGC 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 3 96 GCATGCATGC 87 (Mism.= 0) 92 GCATGCATGC 83 (Mism.= 0) 88 GCATGCATGG 79 (Mism.= 1) TFBS AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE III /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 87 CATGCaTGGC 78 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 80 CATGCATG 87 (Mism.= 0) 84 CATGCATG 91 (Mism.= 0) 88 CATGCATG 95 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 95 CATGCATG 88 (Mism.= 0) 91 CATGCATG 84 (Mism.= 0) 87 CATGCATG 80 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 170 CTATAAATA 178 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 170 CTATAAATAg 179 (Mism.= 1) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 170 CTATAAATAg 179 (Mism.= 1) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 80 CATGCATG 87 (Mism.= 0) 84 CATGCATG 91 (Mism.= 0) 88 CATGCATG 95 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 95 CATGCATG 88 (Mism.= 0) 91 CATGCATG 84 (Mism.= 0) 87 CATGCATG 80 (Mism.= 0) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 170 CTATAAATAG 179 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 179 CTATTTATAG 170 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 179 CTATTTATAG 170 (Mism.= 1) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 90 TGCATGCTG 98 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 120 CACcCGTGTC 129 (Mism.= 1) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 80 CATGCATG 87 (Mism.= 0) 84 CATGCATG 91 (Mism.= 0) 88 CATGCATG 95 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 95 CATGCATG 88 (Mism.= 0) 91 CATGCATG 84 (Mism.= 0) 87 CATGCATG 80 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 80 CATGCATG 87 (Mism.= 0) 84 CATGCATG 91 (Mism.= 0) 88 CATGCATG 95 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 3 95 CATGCATG 88 (Mism.= 0) 91 CATGCATG 84 (Mism.= 0) 87 CATGCATG 80 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 171 TATAAATA 178 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 2 38 GCCACcTCAGC 48 (Mism.= 1) 98 GCCACcTCAGC 108 (Mism.= 1) TFBS AC: RSP02932//OS: maize (Zea mays) /GENE: GRMZM2G097457/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 76 aGTCGTGTCA 67 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 170 CTATAAATaG 179 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 179 CTATTTATAG 170 (Mism.= 0) Totally 62 motifs of 26 different TFBSs have been found ____________________________________________________________ >PLPR0142..AC:Z13992..OS:Solanum tuberosum..GENE:Proteinase inhibitor II..PROD:ATP synthase beta subunit /TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.30 C - 0.15 TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 97 AtTAATAAaAATAATAtATA 116 (Mism.= 3) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 112 tATTATTTTTATT 100 (Mism.= 1) TFBS AC: RSP00444//OS: maize /GENE: cyPPDK1/TFBS: box d /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00018 Up.Conf.Int. 1 Found 2 91 AAaAAAGAAAGAAA 78 (Mism.= 1) 87 AAGAAAGAAAGAtg 74 (Mism.= 2) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00619 Up.Conf.Int. 1 Found 2 158 AAAAAAGAtA 149 (Mism.= 1) 91 AAAAAAGAaA 82 (Mism.= 1) TFBS AC: RSP00508//OS: soybean (Glycine max) /GENE: beta-conglicinin alfa'/TFBS: SEF4 BS /BF: SEF4 Motifs on "+" Strand: Mean Exp. Number 0.00942 Up.Conf.Int. 1 Found 1 151 tCtTTTTTATCA 162 (Mism.= 2) TFBS AC: RSP00649//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C4-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00056 Up.Conf.Int. 1 Found 1 107 tTTTTaTTAATTGATAAAAaAAg 85 (Mism.= 4) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 86 AGAAAGAAA 78 (Mism.= 0) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 86 AGAAAGAaA 78 (Mism.= 1) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 86 AGAAAGaAA 78 (Mism.= 1) TFBS AC: RSP00984//OS: potato, Solanum tuberosum /GENE: PI-IIK/TFBS: Wound-inducible nuclear factor BS /BF: wound-inducible nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00029 Up.Conf.Int. 1 Found 1 34 AAGCGTAAGT 43 (Mism.= 0) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 17 TCTCtCCAtCCG 6 (Mism.= 2) TFBS AC: RSP01271//OS: potato (Solanum tuberosum) /GENE: Pin-II/TFBS: WRE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 34 AAGCGTAAGT 43 (Mism.= 0) TFBS AC: RSP01272//OS: potato (Solanum tuberosum) /GENE: Pin-II/TFBS: 30 bp promoter region /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 34 AAGCGTAAGTACaTTGCCAAAcTAATTAta 63 (Mism.= 4) TFBS AC: RSP01505//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 3 GATCGGAtG 11 (Mism.= 1) TFBS AC: RSP01506//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 3 GATCGGAtG 11 (Mism.= 1) TFBS AC: RSP01639//OS: tobacco (Nicotiana tabacum) /GENE: PR-Q; ACS2/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 237 AATTGTCCAT 246 (Mism.= 1) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 16 CTCTCCAT 9 (Mism.= 0) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 90 AAAAAGAAA 82 (Mism.= 0) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "-" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 90 aaAAAGAAAGAA 79 (Mism.= 2) TFBS AC: RSP02707//OS: rice blast fungus (Magnaporthe oryzae) /GENE: COS1-dependent genes/TFBS: A4GA3-motif /BF: COS1 Motifs on "-" Strand: Mean Exp. Number 0.00765 Up.Conf.Int. 1 Found 1 89 AAAAGAAA 82 (Mism.= 0) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 180 CTATTTATAG 171 (Mism.= 0) Totally 23 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0143..AC:A08215..OS:Solanum tuberosum ..GENE:patatin..PROD:ATP synthase beta subunit /TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.30 C - 0.17 TFBS AC: RSP00206//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 101 GTGAGGTAATAa 112 (Mism.= 1) TFBS AC: RSP00397//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00737 Up.Conf.Int. 1 Found 1 83 AGTtGCGG 90 (Mism.= 1) TFBS AC: RSP00431//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB77 BS /BF: AtMYB77 Motifs on "+" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 77 AACGACAGTTGC 88 (Mism.= 0) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00830 Up.Conf.Int. 1 Found 1 53 GAAAAAGgAAAgGtAA 68 (Mism.= 3) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "-" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 176 GgCACGTAAa 167 (Mism.= 2) TFBS AC: RSP00797//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: SURE-1 /BF: SURF Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 44 TAAAtAATAGAAAAAGGAA 62 (Mism.= 1) TFBS AC: RSP00798//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: SURE-2 /BF: SURF Motifs on "+" Strand: Mean Exp. Number 0.00183 Up.Conf.Int. 1 Found 1 31 TATATAATACTAATAAAtA 49 (Mism.= 1) TFBS AC: RSP00802//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: Box A-1 /BF: BABF Motifs on "+" Strand: Mean Exp. Number 0.00141 Up.Conf.Int. 1 Found 1 19 ATATATATATATTATATAAT 38 (Mism.= 0) TFBS AC: RSP01084//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE1 /BF: HaDREB2 Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 91 ACCGCAACT 83 (Mism.= 0) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 123 CTTTTATTGG 132 (Mism.= 1) TFBS AC: RSP01725//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 177 AGgCACGTAAAc 166 (Mism.= 2) TFBS AC: RSP01829//OS: rice (Oryza sativa) /GENE: CYP703A3/TFBS: GAMYB BS (CYP703A3) /BF: GAMYB Motifs on "-" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 135 TAACCAAT 128 (Mism.= 0) TFBS AC: RSP02193//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 132 CCAATAAAAG 123 (Mism.= 1) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00368 Up.Conf.Int. 1 Found 1 123 CTTTTaTTGG 132 (Mism.= 1) TFBS AC: RSP02415//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 45-48 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00822 Up.Conf.Int. 1 Found 1 87 GCGGTGc 93 (Mism.= 1) TFBS AC: RSP02850//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VITL1/TFBS: VP2 /BF: WRKY46 Motifs on "+" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 133 TTatGTCAAACT 144 (Mism.= 2) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0144..AC:X02983..OS:Pisum sativum..GENE:legB..PROD:legumin..[ -200: +51]..CDS:+36..TSS+1359 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.14 T - 0.31 C - 0.28 TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 136 TGACGTGTC 144 (Mism.= 1) TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "+" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 44 GCCACCTC 51 (Mism.= 0) TFBS AC: RSP00180//OS: barley (Hordeum vulgare) /GENE: EPB-1/TFBS: GARE-4 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 223 cTAAgAGAATGtTGG 209 (Mism.= 3) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 44 GCCACCTCctCT 55 (Mism.= 2) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "+" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 136 TGACGTGT 143 (Mism.= 1) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "-" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 143 aCACGTCA 136 (Mism.= 1) TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "-" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 141 ACGTCATtGA 132 (Mism.= 1) TFBS AC: RSP00394//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "+" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 68 TGTAAAG 74 (Mism.= 0) TFBS AC: RSP00396//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "+" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 68 TGTAAAG 74 (Mism.= 0) TFBS AC: RSP00429//OS: barley (Hordeum vulgare) /GENE: Hor2 gene/TFBS: P-box; hor2-box. /BF: BLZ1 (bZIP transcription factor); PBF; Motifs on "+" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 68 TGTAAAG 74 (Mism.= 0) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "-" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 144 GACAcGTCAT 135 (Mism.= 1) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 144 GaCACGTCaT 135 (Mism.= 2) TFBS AC: RSP01172//OS: pea (Pisum sativum) /GENE: PsLegA/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 84 TCCATAGCCATGCAAGCTGCAGAATG 109 (Mism.= 0) TFBS AC: RSP01173//OS: pea (Pisum sativum) /GENE: PsLegJ/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 85 cCaTAGCCATGCAaGCTGcAgAATG 109 (Mism.= 5) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 136 TGACGTGT 143 (Mism.= 0) TFBS AC: RSP01402//OS: wheat (Triticum aestivum) /GENE: alpha-gliadin/TFBS: PB /BF: WPBF Motifs on "+" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 68 TGTAAAG 74 (Mism.= 0) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 134 AATGACGTGT 143 (Mism.= 0) TFBS AC: RSP01658//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 134 aATGACGTGTCc 145 (Mism.= 2) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 135 aTGACGTGtC 144 (Mism.= 2) Totally 19 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0145..AC:X02915..OS:Zea mays..GENE:Adh2-N..PROD:alcohol dehydrogenase 2N..[ -200: +51]..CDS:+128..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.23 C - 0.32 TFBS AC: RSP00097//OS: maize (Zea mays) /GENE: GapC4/TFBS: 9-mer box /BF: tobacco nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 117 ACGGTCCA 124 (Mism.= 0) TFBS AC: RSP00394//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 225 TGTAAAG 231 (Mism.= 0) TFBS AC: RSP00396//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 225 TGTAAAG 231 (Mism.= 0) TFBS AC: RSP00429//OS: barley (Hordeum vulgare) /GENE: Hor2 gene/TFBS: P-box; hor2-box. /BF: BLZ1 (bZIP transcription factor); PBF; Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 225 TGTAAAG 231 (Mism.= 0) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 219 GCCAAGTGtA 228 (Mism.= 1) TFBS AC: RSP00751//OS: Catharanthus roseus /GENE: STR/TFBS: BN-2 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 8 AAtCCGtTAAAA 19 (Mism.= 2) TFBS AC: RSP01180//OS: maize (Zea mays) /GENE: Adh2/TFBS: “-160 footprint” /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 29 CAGCGgACAATCGGTCACCTCCCTG 53 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 164 CaCTATATAT 173 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 177 CTgTATATAT 168 (Mism.= 1) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 166 CTATAtATAC 175 (Mism.= 1) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 166 CTATAtATAC 175 (Mism.= 1) TFBS AC: RSP01402//OS: wheat (Triticum aestivum) /GENE: alpha-gliadin/TFBS: PB /BF: WPBF Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 225 TGTAAAG 231 (Mism.= 0) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 219 GCCAAGTGTa 228 (Mism.= 1) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 232 TcTTTACACT 223 (Mism.= 1) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 88 ATTTTTTTtT 79 (Mism.= 1) Totally 15 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0146..AC:X04049 X00581..OS:Zea mays..GENE:Adh1-1S..PROD:alcohol dehydrogenase 1..[ -200: +51]..CDS:+100..TSS+1104 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.18 G - 0.23 T - 0.25 C - 0.33 TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 162 ATAtAAATCAg 172 (Mism.= 2) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 167 TTATATA 161 (Mism.= 0) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 43 CAgGTGGaGCTG 54 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 181 TTCTCgCTCCT 191 (Mism.= 1) TFBS AC: RSP00674//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 2 /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 92 CAAgCAAACCACgT 79 (Mism.= 2) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 163 TATAAAT 169 (Mism.= 0) TFBS AC: RSP00855//OS: arabidopsis (Arabidopsis thaliana) /GENE: FIL/TFBS: 12 bp element /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 228 AACtGGTGAAgG 239 (Mism.= 2) TFBS AC: RSP00878//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Site I /BF: RPCF-1 Motifs on "+" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 42 CCAGGTGG 49 (Mism.= 0) TFBS AC: RSP01137//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region A /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 103 CCGCCTGTGGGC 92 (Mism.= 0) TFBS AC: RSP01138//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region C /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 17 GACGTGGTTTTC 6 (Mism.= 0) TFBS AC: RSP01139//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00073 Up.Conf.Int. 1 Found 1 79 ACGTGGTTT 87 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 1 16 ACGTGGTTT 8 (Mism.= 0) TFBS AC: RSP01140//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 57 GCCCCGGTTTCGCAAG 72 (Mism.= 0) TFBS AC: RSP01141//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 57 GCCCCGGTTTCGCAAGCCGCGCACGTGGTTT 87 (Mism.= 0) TFBS AC: RSP01190//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: C-box /BF: C factor Motifs on "+" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 17 CCACGGACCA 26 (Mism.= 1) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 94 CCACAGGC 101 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 77 GCACGTGG 84 (Mism.= 0) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 78 CACGTGGT 85 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 163 TATAAATC 170 (Mism.= 1) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 76 CgCACGTGGT 85 (Mism.= 1) Totally 20 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0147..AC:X01704..OS:Glycine max..GENE:nodulin-23..PROD:nodulin-23..[ -200: +51]..CDS:+81..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.38 C - 0.11 TFBS AC: RSP00192//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: AACA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 174 TAACAAAaTCTA 163 (Mism.= 1) TFBS AC: RSP00307//OS: barley (Hordeum vulgare) /GENE: Chi26/TFBS: GCCAAG motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 84 GCCAAG 79 (Mism.= 0) TFBS AC: RSP01821//OS: tobacco (Nicotiana tabacum) /GENE: Pr-1a/TFBS: MBSII box /BF: Myb1 Motifs on "-" Strand: Mean Exp. Number 0.00626 Up.Conf.Int. 1 Found 1 221 GTTTGGT 215 (Mism.= 0) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 85 tGCCAAGA 78 (Mism.= 1) TFBS AC: RSP02080//OS: Humicola gricea /GENE: cbh1.1; cbh1.2; egl1; pacC/TFBS: PacC BS (cons) /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 84 GCCAAG 79 (Mism.= 0) TFBS AC: RSP02226//OS: Arabidopsis (Arabidopsis thaliana) /GENE: /TFBS: MYC2/MYC3/MYC4 BS3 /BF: MYC2; MYC3; MYC4 Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 92 CACGAG 87 (Mism.= 0) TFBS AC: RSP02329//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 3 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "+" Strand: Mean Exp. Number 0.00626 Up.Conf.Int. 1 Found 1 215 ACCAAAC 221 (Mism.= 0) TFBS AC: RSP02748//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 2 (IRX8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 214 CACCAAAC 221 (Mism.= 0) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 214 CACCAAAC 221 (Mism.= 1) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 214 CACCAAAC 221 (Mism.= 1) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 214 CACCAAAC 221 (Mism.= 1) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 214 CACCAAAC 221 (Mism.= 1) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 214 CACCAAAC 221 (Mism.= 1) TFBS AC: RSP02844//OS: tomato (Solanum lycopersicum) /GENE: GAME4/TFBS: P box 1 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 246 TAGCCCCttA 237 (Mism.= 2) TFBS AC: RSP02923//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00271 Up.Conf.Int. 1 Found 1 94 cTCACGAGtT 85 (Mism.= 2) TFBS AC: RSP02925//OS: Medicago truncatula /GENE: UGT73K1/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 94 cTCACGAGTt 85 (Mism.= 2) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0148..AC:K03074..OS:Triticum aestivum..GENE:alpfa/beta-gliadin..PROD:gliadin, storage protein..[ -200: +51]..CDS:+69..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.23 C - 0.22 TFBS AC: RSP01114//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 99 CCAAAAT 93 (Mism.= 0) TFBS AC: RSP02101//OS: maize (Zea mays) /GENE: A1/TFBS: P (-118) element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 174 CTTGTAGCAT 183 (Mism.= 2) TFBS AC: RSP02544//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AS2/TFBS: WUS BS 1 (AS2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 92 CATAATTT 85 (Mism.= 0) TFBS AC: RSP02914//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS1 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00653 Up.Conf.Int. 1 Found 1 165 TAGCTcCCAT 156 (Mism.= 1) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0149..AC:M92095..OS:Phaseolus vulgaris..GENE:gln-gamma..PROD:glutamine synthetase..[ -200: +51]..CDS:+70..TSS:201 (+1) # Alternative TSS(s): -8 -4 -2 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.17 T - 0.31 C - 0.14 TFBS AC: RSP00473//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS3 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 71 CATGTGcGTaTTC 83 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 210 AGAAAGAGA 218 (Mism.= 0) TFBS AC: RSP01981//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 134 GTTTTGGAA 142 (Mism.= 0) TFBS AC: RSP02707//OS: rice blast fungus (Magnaporthe oryzae) /GENE: COS1-dependent genes/TFBS: A4GA3-motif /BF: COS1 Motifs on "-" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 112 AAAAGAAA 105 (Mism.= 0) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0150..AC:X55937..OS:Brassica napus..GENE:rbcSF1..PROD:ribulose bisphosphate carboxylase..[ -200: +51]..CDS:+33..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.29 C - 0.18 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 37 GGcCaCGTGGC 27 (Mism.= 2) TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 27 GCCaCGTGGC 36 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 36 GCCaCGTGGC 27 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 27 GCCACGTGGC 36 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 36 GCCACGTGGC 27 (Mism.= 0) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 28 CCACGTGGCC 37 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 35 CCACGTGGCa 26 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 28 CCACGTGGCC 37 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 35 CCACGTGGCa 26 (Mism.= 1) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "-" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 204 CTTAAcTTAcTTgTTT 189 (Mism.= 3) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 29 CACGTGGC 36 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 34 CACGTGGC 27 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 27 GcCACGTGGC 36 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 36 GcCACGTGGC 27 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 26 TGcCACGTGGCc 37 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 37 gGcCACGTGGCA 26 (Mism.= 2) TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 5 AAGATAAGA 13 (Mism.= 0) TFBS AC: RSP00274//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 1 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 27 GCCACGTGGC 36 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 36 GCCACGTGGC 27 (Mism.= 0) TFBS AC: RSP00478//OS: barley (Hordeum vulgare); Brassica napus /GENE: rbcSF1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 26 TGCCACGTGGCCTTAACATAGTGGTC 51 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 27 GCCACGTGGc 36 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 36 GCCACGTGGc 27 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 28 CCACGTGG 35 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 35 CCACGTGG 28 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 29 CACGTGGC 36 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 34 CACGTGGC 27 (Mism.= 0) TFBS AC: RSP00724//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I/G-box /BF: HY5 and other unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 7 GATAAGA 13 --15-- 29 CACGTGGC 36 (Mism.= 0/ 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 26 TGCCACGTGgCc 37 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 37 gGCCACGTGgCA 26 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 26 TGCCACGTGGcc 37 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 37 gGCCACGTGGcA 26 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 27 GcCACGTGgC 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 36 GcCACGTGgC 27 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 27 gCCACGTGgC 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00915 Up.Conf.Int. 1 Found 1 36 gCCACGTGgC 27 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 30 ACGTGGC 36 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 33 ACGTGGC 27 (Mism.= 0) TFBS AC: RSP01053//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GATA-core /BF: HvMCB1 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 7 GATAAGATA 15 (Mism.= 0) TFBS AC: RSP01135//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: I-box-like sequence /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00347 Up.Conf.Int. 1 Found 1 6 AGATAAGATAATA 18 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 27 GCCACGTGGC 36 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00131 Up.Conf.Int. 1 Found 1 36 GCCACGTGGC 27 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 172 aTCTATATAT 163 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 28 CCACGTGG 35 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 35 CCACGTGG 28 (Mism.= 0) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "+" Strand: Mean Exp. Number 0.00608 Up.Conf.Int. 1 Found 1 117 CTGGaCCCTCt 127 (Mism.= 2) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00675 Up.Conf.Int. 1 Found 1 29 CACGTGGC 36 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 34 CACGTGGC 27 (Mism.= 0) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 216 TtcTtCTTTTCTCTT 202 (Mism.= 3) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 26 TGCCACGTGGcc 37 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 27 GCCACGTGgC 36 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 36 GCCACGTGgC 27 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 27 GcCACGTGgC 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 36 GcCACGTGgC 27 (Mism.= 2) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 86 CATGTGGCA 94 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 26 TGcCACGTGGCc 37 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 37 gGcCACGTGGCA 26 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 28 CCACGTGGCC 37 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 35 CCACGTGGCa 26 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 27 gCCACGTGgC 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 36 gCCACGTGgC 27 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 27 gCCACGTGGC 36 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 36 gCCACGTGGC 27 (Mism.= 1) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 28 CCACGTGG 35 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 35 CCACGTGG 28 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 3 211 GAAGAAGAA 219 (Mism.= 0) 214 GAAGAAGAA 222 (Mism.= 0) 217 GAAGAAGAA 225 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 27 GCCACGTGgc 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 36 GCCACGTGgc 27 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00915 Up.Conf.Int. 1 Found 1 27 GcCACGTGGc 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 36 GcCACGTGGc 27 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00915 Up.Conf.Int. 1 Found 1 27 GcCACGTGGc 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 36 GcCACGTGGc 27 (Mism.= 2) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 28 CCACGTGG 35 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 35 CCACGTGG 28 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 30 ACGTGGC 36 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 33 ACGTGGC 27 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 27 GcCACGTGgC 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 36 GcCACGTGgC 27 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 27 gcCACGTGGC 36 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 36 gcCACGTGGC 27 (Mism.= 2) Totally 81 motifs of 46 different TFBSs have been found ____________________________________________________________ >PLPR0151..AC:Z98758..OS:Dianthus caryophyllus..GENE:hcbt2..PROD:N-hydroxycinnamoyl/..[ -200: +51]..CDS:+152..TSS+1855 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.32 C - 0.18 TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 123 GCCGCGTGGa 132 (Mism.= 1) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "+" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 34 TGACGTTG 41 (Mism.= 1) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "-" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 41 CaACGTCA 34 (Mism.= 1) TFBS AC: RSP00342//OS: spinach (Spinacia oleracea) /GENE: rps1/TFBS: S1F BS3 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 231 ATCTTTcAAtTAAgTTT 247 (Mism.= 3) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00253 Up.Conf.Int. 1 Found 1 141 TGGTCAATTC 150 (Mism.= 0) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 140 TTGGTCAATTC 150 (Mism.= 0) TFBS AC: RSP00727//OS: tobacco (Nicotiana tabacum) /GENE: Ubi.U4/TFBS: U-box /BF: unknown transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 79 GCTTGAC 73 (Mism.= 0) TFBS AC: RSP00880//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M1 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 41 CAACGtCAAC 32 (Mism.= 1) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 32 GTTGACGTTG 41 (Mism.= 1) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00286 Up.Conf.Int. 1 Found 1 122 TGCCgCGTGGAt 133 (Mism.= 2) TFBS AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE II /BF: CpbZIP1; CpbZIP2 (short); Motifs on "+" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 123 gCCGCGTGGa 132 (Mism.= 2) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 150 GAATTGACCAA 140 (Mism.= 0) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 150 GAATTGACCAA 140 (Mism.= 0) TFBS AC: RSP01733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM2 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00941 Up.Conf.Int. 1 Found 1 124 CCGCGT 129 (Mism.= 0) TFBS AC: RSP02227//OS: Arabidopsis (Arabidopsis thaliana) /GENE: /TFBS: MYC2/MYC3/MYC4 BS4 /BF: MYC2; MYC3; MYC4 Motifs on "-" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 130 CACGCG 125 (Mism.= 0) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 123 GcCgCGTGGA 132 (Mism.= 2) TFBS AC: RSP02762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS2 (MYB58) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00653 Up.Conf.Int. 1 Found 1 177 TACCAACT 184 (Mism.= 0) TFBS AC: RSP02763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS1 (MYB63) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00653 Up.Conf.Int. 1 Found 1 177 TACCAACT 184 (Mism.= 0) TFBS AC: RSP02870//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtJIN1/TFBS: AtCAMTA3 BS /BF: AtCAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00941 Up.Conf.Int. 1 Found 1 124 CCGCGT 129 (Mism.= 0) Totally 19 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0152..AC:X56337..OS:Oryza sativa..GENE:RAmy3B..PROD:alpha-amylase..[ -200: +51]..CDS:+32..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.22 C - 0.31 TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 155 GCCACTTGgC 146 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 146 GCCAaGTGGC 155 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 155 GCCACtTGGC 146 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 154 CCACtTGGCC 145 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 154 CCACtTGGCC 145 (Mism.= 1) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 154 CCACTTG 148 (Mism.= 0) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 146 GCCAAGTGGc 155 (Mism.= 1) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 222 CTTTCGaGTAgCtCA 208 (Mism.= 3) TFBS AC: RSP00751//OS: Catharanthus roseus /GENE: STR/TFBS: BN-2 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 54 AAgCaGATAAAA 43 (Mism.= 2) TFBS AC: RSP01207//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL2 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 146 CCAATGGATGGA 135 (Mism.= 2) TFBS AC: RSP01212//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL2 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 146 CCAATGGATGGA 135 (Mism.= 2) TFBS AC: RSP01435//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: BoxII /BF: RNFG2 Motifs on "-" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 111 cCCCCAACgA 102 (Mism.= 2) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 210 TCACtTGTGT 201 (Mism.= 1) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 146 GCCAAGTGgC 155 (Mism.= 1) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 145 GGCCAAGT 152 (Mism.= 0) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 154 CCACTTG 148 (Mism.= 0) TFBS AC: RSP02846//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 1 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00188 Up.Conf.Int. 1 Found 1 165 CAGCACGgCA 156 (Mism.= 1) Totally 17 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0153..AC:M63642..OS:Lycopersicon esculentum..GENE:HMG2..PROD:3-hydroxy-3-methylglutaryl coenzyme A reductase..[ -200: +51]..CDS:+112..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.08 T - 0.31 C - 0.23 TFBS AC: RSP00019//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box5 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 87 AGAaaGTATATT 98 (Mism.= 2) TFBS AC: RSP00029//OS: wheat (Triticum aestivum) /GENE: LMW-glutenin/TFBS: P-box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 101 TGTAAAAG 108 (Mism.= 0) TFBS AC: RSP00031//OS: maize (Zea mays) /GENE: SBEI/TFBS: "-314" /BF: nuclear proteins Motifs on "+" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 126 AtATAAAATgAAAAAAGtCc 145 (Mism.= 4) TFBS AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GC-rich motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 154 tGCCGCG 148 (Mism.= 1) TFBS AC: RSP00483//OS: maize (Zea mays) /GENE: Adh1/TFBS: GC-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00644 Up.Conf.Int. 1 Found 1 153 GCCGC 149 (Mism.= 0) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 230 tACTTGtCaATCATC 244 (Mism.= 3) TFBS AC: RSP00750//OS: Catharanthus roseus /GENE: STR/TFBS: BN rev /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 97 TTATTGTAAAAg 108 (Mism.= 1) TFBS AC: RSP00854//OS: maize (Zea mays) /GENE: H4C7/TFBS: OCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 148 CGCGGCAaC 156 (Mism.= 1) TFBS AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE II /BF: CpbZIP1; CpbZIP2 (short); Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 144 CCaGCGcGGC 153 (Mism.= 2) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 25 aTTTTACACT 34 (Mism.= 1) TFBS AC: RSP01974//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 33 CTTGACCA 40 (Mism.= 0) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 83 AAAAAGAAA 91 (Mism.= 0) TFBS AC: RSP02338//OS: potato (Solanum tuberosum) /GENE: StGA2ox1/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 34 TTGACCAGTCA 44 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 45 TTGACTGGTCA 35 (Mism.= 2) TFBS AC: RSP02341//OS: potato (Solanum tuberosum) /GENE: IPT/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 34 TTGACCAGTCA 44 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 45 TTGACTGGTCA 35 (Mism.= 2) TFBS AC: RSP02724//OS: rice (Oryza sativa) /GENE: OsYSL2/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 237 GaCAAGTATAA 227 (Mism.= 1) TFBS AC: RSP02846//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 1 /BF: JRE-4 Motifs on "+" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 145 CAGCgCGgCA 154 (Mism.= 2) Totally 20 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0154..AC:X16437..OS:Sinapis alba..GENE:CHS1..PROD:chalcone synthase..[ -200: +51]..CDS:+49..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.29 C - 0.25 TFBS AC: RSP00014//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: MRE-core /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 89 TCaAACCTACC 99 (Mism.= 1) TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 129 TcTtGTTATATA 140 (Mism.= 2) TFBS AC: RSP00351//OS: tobacco (Nicotiana tabacum) /GENE: LTR-Tto1/TFBS: 13 bp-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 100 TGGTAGGTttGAT 88 (Mism.= 2) TFBS AC: RSP00823//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: MRE (AtCHS) /BF: R2R3-type MYB Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 81 CCCGTCCATCaAACCTACCACACTCTCt 108 (Mism.= 2) TFBS AC: RSP00830//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: RRE (AtCHS) /BF: BHLH factors R, C1, Sn Motifs on "+" Strand: Mean Exp. Number 0.00253 Up.Conf.Int. 1 Found 1 72 CTTCATCTGCCC 83 (Mism.= 0) TFBS AC: RSP00942//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00073 Up.Conf.Int. 1 Found 1 237 GTtgGtTTAATATGG 251 (Mism.= 3) TFBS AC: RSP01175//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 2 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 76 AtCTGCCCGTC 86 (Mism.= 1) TFBS AC: RSP01595//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box II /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00073 Up.Conf.Int. 1 Found 1 237 GTtgGtTTAATATGG 251 (Mism.= 3) TFBS AC: RSP01887//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS1 /BF: VSF-1 Motifs on "-" Strand: Mean Exp. Number 0.00145 Up.Conf.Int. 1 Found 1 49 CTCCcTTttATGTGG 35 (Mism.= 3) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "-" Strand: Mean Exp. Number 0.00349 Up.Conf.Int. 1 Found 1 242 ACCAACTTGgt 232 (Mism.= 2) TFBS AC: RSP02328//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 2 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 242 ACCAACT 236 (Mism.= 0) TFBS AC: RSP02590//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 242 ACCAACT 236 (Mism.= 0) TFBS AC: RSP02661//OS: gray rockcress (Arabis alpina) /GENE: AaCathB3/TFBS: G-box /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 71 CACAACGTGTtA 60 (Mism.= 1) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 246 tTAAACCAAC 237 (Mism.= 1) TFBS AC: RSP02724//OS: rice (Oryza sativa) /GENE: OsYSL2/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 190 GgCAAGTATAt 180 (Mism.= 2) TFBS AC: RSP02772//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: SND1 BS /BF: SND1 Motifs on "-" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 200 TTGCGTAA 193 (Mism.= 0) TFBS AC: RSP02944//OS: maize (Zea mays) /GENE: RLK/TFBS: RS2 BS /BF: RS2 Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 90 CAAACCTACC 99 (Mism.= 0) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0155..AC:Y00687..OS:Oryza sativa..GENE:type II glutelin..PROD:type II glutelin..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.30 C - 0.24 TFBS AC: RSP00041//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (P) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 123 tAACAAACTcTATC 136 (Mism.= 2) TFBS AC: RSP00192//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: AACA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 123 TAACAAACTCTA 134 (Mism.= 0) TFBS AC: RSP00195//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 73 TtCGTGTACCA 83 (Mism.= 1) TFBS AC: RSP00196//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 71 CTTTcGTGTACCacA 85 (Mism.= 3) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 171 TAAATGCA 178 (Mism.= 0) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 71 CTTTCGTGTACCACA 85 (Mism.= 0) TFBS AC: RSP00692//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 20 ACAATGCTGCGTCAATTA 37 (Mism.= 0) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 124 AACAAACTCTATC 136 (Mism.= 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 4 AGAGAGaAA 12 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 4 AGAGAGAaA 12 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 199 AGAAACAA 192 (Mism.= 0) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 124 AACAAACTCTATC 136 (Mism.= 0) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00743 Up.Conf.Int. 1 Found 1 74 TCGTGTAC 81 (Mism.= 1) TFBS AC: RSP02992//OS: Brassica juncea /GENE: BjCHI1/TFBS: WBl-4 /BF: BjMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 110 GaAGTGACTCtT 99 (Mism.= 2) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0156..AC:AJ010729..OS:Avena fatua..GENE:alpha-Amy2D..PROD:alpha-amylase..[ -200: +51]..CDS:+59..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.22 C - 0.33 TFBS AC: RSP00034//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 55 TAACAGA 61 --26-- 88 CCAAGCAACA 97 (Mism.= 0/ 0) TFBS AC: RSP00485//OS: barley (Hordeum vulgare) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 55 TAACAGA 61 --26-- 88 CCAAGCAACA 97 (Mism.= 0/ 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 169 TATAAATACCAG 180 (Mism.= 0) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 18 TGACTTGACCGTCAT 32 (Mism.= 0) TFBS AC: RSP00658//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 55 TAACAGA 61 --26-- 88 CCAAGCAACA 97 (Mism.= 0/ 0) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 19 GACTTGACCgTCATC 33 (Mism.= 1) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 88 CCAAGCAACA 97 (Mism.= 0) TFBS AC: RSP00844//OS: oat (Avena fatua) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 55 TAACAGA 61 --26-- 88 CCAAGCAACA 97 (Mism.= 0/ 0) TFBS AC: RSP00846//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 55 TAACAGA 61 --26-- 88 CCAAGCAACA 97 (Mism.= 0/ 0) TFBS AC: RSP00848//OS: wheat (Triticum aestivum) /GENE: Amy2/8/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 55 TAACAGA 61 --26-- 88 CCAAGCAACA 97 (Mism.= 0/ 0) TFBS AC: RSP00851//OS: wheat (Triticum aestivum) /GENE: Amy2/34/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 55 TAACAGA 61 --26-- 88 CCAAGCAACA 97 (Mism.= 0/ 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 221 gGAGAGGAA 229 (Mism.= 1) TFBS AC: RSP01293//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 14 AGATTGACTTGACCGTCAT 32 (Mism.= 0) TFBS AC: RSP01295//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 14 AGATTGACTTGACCGTCAT 32 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 168 CTATAAATA 176 (Mism.= 0) TFBS AC: RSP01298//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 14 aGATTGACTTGACCGTCAT 32 (Mism.= 1) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 210 ATCAATCATTC 220 (Mism.= 2) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 14 aGATTGACTTgA 25 (Mism.= 2) TFBS AC: RSP02010//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 6 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 25 TCaAGTCAaTCT 14 (Mism.= 2) TFBS AC: RSP02246//OS: Arabidopsis (Arabidopsis thaliana) /GENE: RPP8/TFBS: W-RPP8-A/B/C /BF: WRKY transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00991 Up.Conf.Int. 1 Found 1 16 ATTGACTT 23 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 1 227 GAAGAAGAA 235 (Mism.= 0) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00066 Up.Conf.Int. 1 Found 1 18 TGACTTGAC 26 (Mism.= 0) TFBS AC: RSP02438//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IKU2/TFBS: Wi-box /BF: MINI3 Motifs on "+" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 17 TTGACTT 23 (Mism.= 0) TFBS AC: RSP02530//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 3 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 186 TAGTACAC 193 (Mism.= 0) TFBS AC: RSP02531//OS: rice (Oryza sativa, japonica) /GENE: SLR1/TFBS: GTAC-motif 3 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 134 CCGTACAT 127 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00305 Up.Conf.Int. 1 Found 1 169 TATAAATA 176 (Mism.= 0) Totally 28 motifs of 28 different TFBSs have been found ____________________________________________________________ >PLPR0157..AC:X05166 Y00107..OS:Hordeum vulgare..GENE:Amy32b..PROD:alpha-amylase type A..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.20 T - 0.27 C - 0.27 TFBS AC: RSP00034//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 82 TAACAGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 0/ 0) TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 113 AAGCAACACtCcAC 126 (Mism.= 2) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 94 GTATCCATG 102 (Mism.= 0) TFBS AC: RSP00485//OS: barley (Hordeum vulgare) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 82 TAACAGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 0/ 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00066 Up.Conf.Int. 1 Found 1 170 TATAAATACCAa 181 (Mism.= 1) TFBS AC: RSP00540//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 84 TTACGAgAAAaGG 72 (Mism.= 2) TFBS AC: RSP00658//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 82 TAACAGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 0/ 0) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00691 Up.Conf.Int. 1 Found 1 82 TAACAGAGTC 91 (Mism.= 0) TFBS AC: RSP00744//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 4 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00567 Up.Conf.Int. 1 Found 1 181 AGCAcGTAgAAC 192 (Mism.= 2) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 111 CCAAGCAACA 120 (Mism.= 0) TFBS AC: RSP00844//OS: oat (Avena fatua) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 82 TAACAGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 0/ 0) TFBS AC: RSP00848//OS: wheat (Triticum aestivum) /GENE: Amy2/8/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 82 TAACAGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 0/ 0) TFBS AC: RSP00851//OS: wheat (Triticum aestivum) /GENE: Amy2/34/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 82 TAACAGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 0/ 0) TFBS AC: RSP00922//OS: barley (Hordeum vulgare) /GENE: Amy2/32/TFBS: GARE /BF: HRT Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 77 TCTCGTAACAGAGTC 91 (Mism.= 0) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 2 22 TTcCCATGGAaT 33 (Mism.= 2) 95 TaTCCATGcAGT 106 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 2 22 TTcCCATGGAaT 33 (Mism.= 2) 95 TaTCCATGcAGT 106 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 2 22 TTcCCATGGAaT 33 (Mism.= 2) 95 TaTCCATGcAGT 106 (Mism.= 2) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00770 Up.Conf.Int. 1 Found 1 28 TGGAATTTgT 37 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 170 TATAAATA 177 (Mism.= 0) Totally 25 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0158..AC:X13580..OS:Triticum aestivum..GENE:Amy2/54..PROD:alpha-amylase 2/54..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.22 T - 0.25 C - 0.30 TFBS AC: RSP00034//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 81 TAACAGA 87 --22-- 110 CCAAGCAACA 119 (Mism.= 0/ 0) TFBS AC: RSP00221//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: 02S-GARE /BF: unknown bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 51 CTTGACCgTCATc 63 --17-- 81 TAACAGAGTCTGG 93 (Mism.= 2/ 0) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 93 GTATCCATG 101 (Mism.= 0) TFBS AC: RSP00485//OS: barley (Hordeum vulgare) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 81 TAACAGA 87 --22-- 110 CCAAGCAACA 119 (Mism.= 0/ 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 170 TATAAATACCAa 181 (Mism.= 1) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 48 TGACTTGACCGTCAT 62 (Mism.= 0) TFBS AC: RSP00540//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 83 TTACGAAAAAaGG 71 (Mism.= 1) TFBS AC: RSP00658//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 81 TAACAGA 87 --22-- 110 CCAAGCAACA 119 (Mism.= 0/ 0) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 49 GACTTGACCgTCATC 63 (Mism.= 1) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 81 TAACAGAGTC 90 (Mism.= 0) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 110 CCAAGCAACA 119 (Mism.= 0) TFBS AC: RSP00844//OS: oat (Avena fatua) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 81 TAACAGA 87 --22-- 110 CCAAGCAACA 119 (Mism.= 0/ 0) TFBS AC: RSP00848//OS: wheat (Triticum aestivum) /GENE: Amy2/8/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 81 TAACAGA 87 --22-- 110 CCAAGCAACA 119 (Mism.= 0/ 0) TFBS AC: RSP00851//OS: wheat (Triticum aestivum) /GENE: Amy2/34/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 81 TAACAGA 87 --22-- 110 CCAAGCAACA 119 (Mism.= 0/ 0) TFBS AC: RSP00922//OS: barley (Hordeum vulgare) /GENE: Amy2/32/TFBS: GARE /BF: HRT Motifs on "+" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 76 TtTCGTAACAGAGTC 90 (Mism.= 1) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "+" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 71 CCTTTTTTCG 80 (Mism.= 1) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 238 tGGATgGATGA 228 (Mism.= 2) TFBS AC: RSP01293//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 44 gGATTGACTTGACCGTCAT 62 (Mism.= 1) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00755 Up.Conf.Int. 1 Found 2 20 TTTCCATGGAGT 31 (Mism.= 0) 94 TaTCCATGcAGT 105 (Mism.= 2) TFBS AC: RSP01295//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 44 gGATTGACTTGACCGTCAT 62 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01297//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Inr element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 199 GGCCATCAG 207 (Mism.= 0) TFBS AC: RSP01298//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 44 GGATTGACTTGACCGTCAT 62 (Mism.= 0) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00755 Up.Conf.Int. 1 Found 2 20 TTTCCATGGAGT 31 (Mism.= 0) 94 TaTCCATGcAGT 105 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00755 Up.Conf.Int. 1 Found 2 20 TTTCCATGGAGT 31 (Mism.= 0) 94 TaTCCATGcAGT 105 (Mism.= 2) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01827//OS: rice (Oryza sativa); sorghum bicolor (Sorghum japonicum) /GENE: Os/Sb ga2ox1/TFBS: KNOX BS (Os/Sb ga2ox1) /BF: KNOX Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 222 TGACTGGCTGAT 211 (Mism.= 2) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 44 gGATTGACTTgA 55 (Mism.= 2) TFBS AC: RSP02036//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ORA59 (At1g06160)/TFBS: STY1 BS (ORA59) /BF: STY1 Motifs on "+" Strand: Mean Exp. Number 0.00586 Up.Conf.Int. 1 Found 1 119 aCACTCTACGg 129 (Mism.= 2) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 48 TGACTTGAC 56 (Mism.= 0) TFBS AC: RSP02575//OS: Tamarix androssowii /GENE: TaeIF5A1/TFBS: W-box /BF: TaWRKY; TaRAV Motifs on "-" Strand: Mean Exp. Number 0.00915 Up.Conf.Int. 1 Found 1 226 tGGCTGACT 218 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 170 TATAAATA 177 (Mism.= 0) Totally 36 motifs of 33 different TFBSs have been found ____________________________________________________________ >PLPR0159..AC:X13576..OS:Triticum aestivum..GENE:Amy2/8..PROD:alpha-amylase 2/8..[ -200: +51]..CDS:+95..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.23 T - 0.25 C - 0.28 TFBS AC: RSP00034//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 73 TAACgGA 79 --22-- 102 CCAAGCAACA 111 (Mism.= 1/ 0) TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 104 AAGCAACACtCcAC 117 (Mism.= 2) TFBS AC: RSP00221//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: 02S-GARE /BF: unknown bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 43 CTTGACCgTCATc 55 --17-- 73 TAACgGAGTCTGG 85 (Mism.= 2/ 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 85 GTATCCATG 93 (Mism.= 0) TFBS AC: RSP00485//OS: barley (Hordeum vulgare) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 73 TAACgGA 79 --22-- 102 CCAAGCAACA 111 (Mism.= 1/ 0) TFBS AC: RSP00488//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 127 gTACGTAGCC 118 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 170 TATAAATACgAa 181 (Mism.= 2) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 40 TGACTTGACCGTCAT 54 (Mism.= 0) TFBS AC: RSP00540//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 75 TTACGAgAAAaGG 63 (Mism.= 2) TFBS AC: RSP00658//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 73 TAACgGA 79 --22-- 102 CCAAGCAACA 111 (Mism.= 1/ 0) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00360 Up.Conf.Int. 1 Found 1 41 GACTTGACCgTCATC 55 (Mism.= 1) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 73 TAACgGAGTC 82 (Mism.= 1) TFBS AC: RSP00706//OS: arabidopsis (Arabidopsis thaliana) /GENE: ARK3/TFBS: W-box /BF: trnascription factors of WRKY family Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 241 GGTTGACTGAgt 230 (Mism.= 2) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00898 Up.Conf.Int. 1 Found 1 102 CCAAGCAACA 111 (Mism.= 0) TFBS AC: RSP00844//OS: oat (Avena fatua) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 73 TAACgGA 79 --22-- 102 CCAAGCAACA 111 (Mism.= 1/ 0) TFBS AC: RSP00848//OS: wheat (Triticum aestivum) /GENE: Amy2/8/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 73 TAACgGA 79 --22-- 102 CCAAGCAACA 111 (Mism.= 1/ 0) TFBS AC: RSP00851//OS: wheat (Triticum aestivum) /GENE: Amy2/34/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 73 TAACgGA 79 --22-- 102 CCAAGCAACA 111 (Mism.= 1/ 0) TFBS AC: RSP01293//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 36 gGATTGACTTGACCGTCAT 54 (Mism.= 1) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 86 TaTCCATGcAGT 97 (Mism.= 2) TFBS AC: RSP01295//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 36 gGATTGACTTGACCGTCAT 54 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01298//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 36 GGATTGACTTGACCGTCAT 54 (Mism.= 0) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 86 TaTCCATGcAGT 97 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 86 TaTCCATGcAGT 97 (Mism.= 2) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01827//OS: rice (Oryza sativa); sorghum bicolor (Sorghum japonicum) /GENE: Os/Sb ga2ox1/TFBS: KNOX BS (Os/Sb ga2ox1) /BF: KNOX Motifs on "-" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 2 238 TGACTGAGTGAT 227 (Mism.= 1) 222 TGACTGGCTGAT 211 (Mism.= 2) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 36 gGATTGACTTgA 47 (Mism.= 2) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 40 TGACTTGAC 48 (Mism.= 0) TFBS AC: RSP02410//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS3 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 144 ATACTTTG 151 (Mism.= 0) TFBS AC: RSP02575//OS: Tamarix androssowii /GENE: TaeIF5A1/TFBS: W-box /BF: TaWRKY; TaRAV Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 226 tGGCTGACT 218 (Mism.= 1) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 18 TGGAATTTgT 27 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 170 TATAAATA 177 (Mism.= 0) Totally 34 motifs of 33 different TFBSs have been found ____________________________________________________________ >PLPR0160..AC:X13577..OS:Triticum aestivum..GENE:Amy2/53..PROD:alpha-amylase 2/53..[ -200: +51]..CDS:+83..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.20 T - 0.26 C - 0.27 TFBS AC: RSP00034//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 82 TAACgGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 1/ 0) TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 113 AAGCAACACtCcAC 126 (Mism.= 2) TFBS AC: RSP00221//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: 02S-GARE /BF: unknown bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 52 CTTGACCATCATc 64 --17-- 82 TAACgGAGTCTGG 94 (Mism.= 1/ 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 94 GTATCCATG 102 (Mism.= 0) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 59 TGGTCAAGTC 50 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 60 aTGGTCAAgTC 50 (Mism.= 2) TFBS AC: RSP00485//OS: barley (Hordeum vulgare) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 82 TAACgGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 1/ 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 170 TATAAATACCAa 181 (Mism.= 1) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 49 TGACTTGACCaTCAT 63 (Mism.= 1) TFBS AC: RSP00540//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 84 TTACGAgAAAaGG 72 (Mism.= 2) TFBS AC: RSP00658//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 82 TAACgGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 1/ 0) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 50 GACTTGACCATCATC 64 (Mism.= 0) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00773 Up.Conf.Int. 1 Found 1 82 TAACgGAGTC 91 (Mism.= 1) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 111 CCAAGCAACA 120 (Mism.= 0) TFBS AC: RSP00844//OS: oat (Avena fatua) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 82 TAACgGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 1/ 0) TFBS AC: RSP00848//OS: wheat (Triticum aestivum) /GENE: Amy2/8/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 82 TAACgGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 1/ 0) TFBS AC: RSP00851//OS: wheat (Triticum aestivum) /GENE: Amy2/34/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 82 TAACgGA 88 --22-- 111 CCAAGCAACA 120 (Mism.= 1/ 0) TFBS AC: RSP01293//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 45 gGATTGACTTGACCaTCAT 63 (Mism.= 2) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 2 21 TTcCCATGGAaT 32 (Mism.= 2) 95 TaTCCATGcAGT 106 (Mism.= 2) TFBS AC: RSP01295//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 45 gGATTGACTTGACCaTCAT 63 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01298//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 45 GGATTGACTTGACCaTCAT 63 (Mism.= 1) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 2 21 TTcCCATGGAaT 32 (Mism.= 2) 95 TaTCCATGcAGT 106 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 2 21 TTcCCATGGAaT 32 (Mism.= 2) 95 TaTCCATGcAGT 106 (Mism.= 2) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 50 GAcTTGACCAt 60 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 50 GAcTTGACCAt 60 (Mism.= 2) TFBS AC: RSP01974//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 52 CTTGACCA 59 (Mism.= 0) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00439 Up.Conf.Int. 1 Found 1 45 gGATTGACTTgA 56 (Mism.= 2) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 49 TGACTTGAC 57 (Mism.= 0) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 27 TGGAATTTgT 36 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 170 TATAAATA 177 (Mism.= 0) Totally 36 motifs of 33 different TFBSs have been found ____________________________________________________________ >PLPR0161..AC:X13579..OS:Triticum aestivum..GENE:Amy2/46..PROD:alpha-amylase 2/46..[ -200: +51]..CDS:+107..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.28 T - 0.22 C - 0.30 TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "-" Strand: Mean Exp. Number 0.00197 Up.Conf.Int. 1 Found 1 245 CACAaGGCACT 235 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 170 TATAAATACCAa 181 (Mism.= 1) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 170 TATAAAT 176 (Mism.= 0) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 227 AGAAACAG 234 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 227 AGAAACAG 234 (Mism.= 1) TFBS AC: RSP01137//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region A /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00889 Up.Conf.Int. 1 Found 1 77 CCGgCTGTGGGC 88 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP02123//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: GARE /BF: GAMYB-like Motifs on "+" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 229 AAACAGA 235 (Mism.= 0) TFBS AC: RSP02290//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: AE-box /BF: 52-kDa (b3-domain) TF Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 226 AAGAAACAg 234 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 182 GCACGTGG 189 (Mism.= 0) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00475 Up.Conf.Int. 1 Found 1 183 CACGTGGT 190 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 170 TATAAATA 177 (Mism.= 0) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0162..AC:X13578..OS:Triticum aestivum..GENE:Amy2/34..PROD:alpha-amylase 2/34..[ -200: +51]..CDS:+57..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.21 T - 0.25 C - 0.30 TFBS AC: RSP00034//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 75 TAACAGA 81 --22-- 104 gCAAGCAACA 113 (Mism.= 0/ 1) TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00109 Up.Conf.Int. 1 Found 1 106 AAGCAACACtCcAC 119 (Mism.= 2) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 48 TGGTCAAgTC 39 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 49 aTGGTCAAgTC 39 (Mism.= 2) TFBS AC: RSP00485//OS: barley (Hordeum vulgare) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 75 TAACAGA 81 --22-- 104 gCAAGCAACA 113 (Mism.= 0/ 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 170 TATAAATACCAa 181 (Mism.= 1) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 38 TGACTTGACCaTCAT 52 (Mism.= 1) TFBS AC: RSP00658//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 75 TAACAGA 81 --22-- 104 gCAAGCAACA 113 (Mism.= 0/ 1) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 39 GACTTGACCATCATC 53 (Mism.= 0) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00626 Up.Conf.Int. 1 Found 1 75 TAACAGAGTt 84 (Mism.= 1) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00985 Up.Conf.Int. 1 Found 1 104 gCAAGCAACA 113 (Mism.= 1) TFBS AC: RSP00844//OS: oat (Avena fatua) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 75 TAACAGA 81 --22-- 104 gCAAGCAACA 113 (Mism.= 0/ 1) TFBS AC: RSP00848//OS: wheat (Triticum aestivum) /GENE: Amy2/8/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 75 TAACAGA 81 --22-- 104 gCAAGCAACA 113 (Mism.= 0/ 1) TFBS AC: RSP00851//OS: wheat (Triticum aestivum) /GENE: Amy2/34/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 75 TAACAGA 81 --22-- 104 gCAAGCAACA 113 (Mism.= 0/ 1) TFBS AC: RSP01326//OS: pea (Pisum sativum) /GENE: AB80/TFBS: AB1 heptamer /BF: ABF-2 Motifs on "-" Strand: Mean Exp. Number 0.00950 Up.Conf.Int. 1 Found 1 248 TCTCAAA 242 (Mism.= 0) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 4 TTTCCATGGAGg 15 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 4 TTTCCATGGAGg 15 (Mism.= 1) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 4 TTTCCATGGAGg 15 (Mism.= 1) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01326//OS: pea (Pisum sativum) /GENE: AB80/TFBS: AB1 heptamer /BF: ABF-2 Motifs on "-" Strand: Mean Exp. Number 0.00950 Up.Conf.Int. 1 Found 1 248 TCTCAAA 242 (Mism.= 0) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 39 GAcTTGACCAt 49 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 39 GAcTTGACCAt 49 (Mism.= 2) TFBS AC: RSP01974//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00505 Up.Conf.Int. 1 Found 1 41 CTTGACCA 48 (Mism.= 0) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 38 TGACTTGAC 46 (Mism.= 0) TFBS AC: RSP02710//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 2 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 75 ATGGAAAaGAG 65 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 170 TATAAATA 177 (Mism.= 0) Totally 28 motifs of 28 different TFBSs have been found ____________________________________________________________ >PLPR0163..AC:Z15117 S57369..OS:Sauromatum guttatum..GENE:aox1..PROD:salicylic acid-inducible alternative oxidase..[ -200: +51]..CDS:+82..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.14 T - 0.33 C - 0.27 TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 120 CATGCATG 127 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 127 CATGCATG 120 (Mism.= 0) TFBS AC: RSP00342//OS: spinach (Spinacia oleracea) /GENE: rps1/TFBS: S1F BS3 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00237 Up.Conf.Int. 1 Found 1 81 gaCTTTTAAaTAACTTT 97 (Mism.= 3) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 233 CCCCTCCTC 241 (Mism.= 0) TFBS AC: RSP00669//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: PG/TFBS: B-box /BF: fruit nuclear protein extracts Motifs on "-" Strand: Mean Exp. Number 0.00650 Up.Conf.Int. 1 Found 1 40 TGATtATATAAAAA 27 (Mism.= 1) TFBS AC: RSP00681//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 4 /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 111 TAATTAATC 103 (Mism.= 0) TFBS AC: RSP00709//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: I-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00513 Up.Conf.Int. 1 Found 1 106 TAATTATTT 114 (Mism.= 0) TFBS AC: RSP00710//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: AT1-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 106 TAATTATTTCTTc 118 (Mism.= 1) TFBS AC: RSP00722//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 11 GATAAGA 17 (Mism.= 0) TFBS AC: RSP00859//OS: maize (Zea mays) /GENE: H4C7/TFBS: GACTGGCTCC motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 223 cACTGGCTCC 214 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 9 199 AGAGAGAGA 191 (Mism.= 0) 197 AGAGAGAGA 189 (Mism.= 0) 195 AGAGAGAGA 187 (Mism.= 0) 193 AGAGAGAGA 185 (Mism.= 0) 191 AGAGAGAGA 183 (Mism.= 0) 189 AGAGAGAGA 181 (Mism.= 0) 187 AGAGAGAGA 179 (Mism.= 0) 185 AGAGAGAGA 177 (Mism.= 0) 183 AGAGAGAGA 175 (Mism.= 0) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 119 cCATGCATGt 128 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 128 aCATGCATGg 119 (Mism.= 2) TFBS AC: RSP01091//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 32 ATAtAATCAAA 42 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 120 CATGCATG 127 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 127 CATGCATG 120 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 7 200 cAGAGAGAGAGAGAGAg 184 (Mism.= 2) 198 GAGAGAGAGAGAGAGAg 182 (Mism.= 1) 196 GAGAGAGAGAGAGAGAg 180 (Mism.= 1) 194 GAGAGAGAGAGAGAGAg 178 (Mism.= 1) 192 GAGAGAGAGAGAGAGAg 176 (Mism.= 1) 190 GAGAGAGAGAGAGAGAt 174 (Mism.= 1) 188 GAGAGAGAGAGAGAttt 172 (Mism.= 3) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 120 CATGCATG 127 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 127 CATGCATG 120 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 119 cCATGCATGT 128 (Mism.= 1) TFBS AC: RSP01682//OS: pea (Pisum sativum) /GENE: FBPase/TFBS: PF1 BS /BF: PF1 Motifs on "-" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 105 ATCtTgTAAAAGTTaT 90 (Mism.= 3) TFBS AC: RSP01866//OS: pepper (Capsicum annuum) /GENE: Bs3-E/TFBS: UPAAvrBs3Drep16 box /BF: UPAAvrBs3Drep16 Motifs on "+" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 166 TActATAAAtCTCTC 180 (Mism.= 3) TFBS AC: RSP02120//OS: Arabidopsis (Arabidopsis thaliana)GS AGAMOUS (AG) /GENE: ech-42/TFBS: LFY BS /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 64 CCAATGT 58 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 8 172 aaaTCTCTCTCTCTCT 187 (Mism.= 3) 174 aTCTCTCTCTCTCTCT 189 (Mism.= 1) 176 CTCTCTCTCTCTCTCT 191 (Mism.= 0) 178 CTCTCTCTCTCTCTCT 193 (Mism.= 0) 180 CTCTCTCTCTCTCTCT 195 (Mism.= 0) 182 CTCTCTCTCTCTCTCT 197 (Mism.= 0) 184 CTCTCTCTCTCTCTCT 199 (Mism.= 0) 186 CTCTCTCTCTCTCTga 201 (Mism.= 2) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "+" Strand: Mean Exp. Number 0.00625 Up.Conf.Int. 1 Found 1 119 cCAtGCATGTG 129 (Mism.= 2) TFBS AC: RSP02698//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: I box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 9 CtGATAAGAc 18 (Mism.= 2) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 120 CATGCATG 127 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 127 CATGCATG 120 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 120 CATGCATG 127 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 127 CATGCATG 120 (Mism.= 0) Totally 51 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0164..AC:U27980..OS:Arabidopsis thaliana..GENE:ACT4..PROD:actin-4..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.29 C - 0.21 TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00591 Up.Conf.Int. 1 Found 1 94 CaTGTCGTCA 103 (Mism.= 1) TFBS AC: RSP00969//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: Aux28B2 /BF: STGA1 Motifs on "-" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 104 gTGACGACAt 95 (Mism.= 2) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00792 Up.Conf.Int. 1 Found 1 86 CTATTTTTGG 77 (Mism.= 1) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00419 Up.Conf.Int. 1 Found 1 68 TtCACGTATC 77 (Mism.= 1) TFBS AC: RSP01651//OS: wheat (Triticum aestivum) /GENE: TaVRN1/TFBS: CArG motif /BF: TaVRT2 Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 238 CTCGTTTTG 246 (Mism.= 0) TFBS AC: RSP02125//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SOC1/TFBS: CArG1 (SVP) /BF: SVP Motifs on "-" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 1 86 CTATTTTTGG 77 (Mism.= 0) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 1 86 CTATTTTTGG 77 (Mism.= 0) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 86 CTATTTTTGG 77 (Mism.= 1) TFBS AC: RSP02395//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VDD/TFBS: CArG3 /BF: STK-SEP3 Motifs on "+" Strand: Mean Exp. Number 0.00146 Up.Conf.Int. 1 Found 1 77 CCAAAAATAGG 87 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0165..AC:X13908 S47120..OS:Oryza sativa..GENE:cab1R..PROD:chlorophyll a/..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.14 T - 0.19 C - 0.43 TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 59 ACaCGCCTCCTC 70 (Mism.= 1) TFBS AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: AT-rich motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00559 Up.Conf.Int. 1 Found 1 176 TTTAAAT 170 (Mism.= 0) TFBS AC: RSP00593//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: GATA/2 B /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00931 Up.Conf.Int. 1 Found 1 13 GAAaCTTAT 21 (Mism.= 1) TFBS AC: RSP00629//OS: arabidopsis (Arabidopsis thaliana) /GENE: Lhcb1*3/TFBS: CCA1 BS2 /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 33 AAAAATCT 40 (Mism.= 0) TFBS AC: RSP00655//OS: rice (Oryza sativa) /GENE: PAL/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00448 Up.Conf.Int. 1 Found 1 169 TATTTAA 175 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 24 TTTATAAgTTTcT 12 (Mism.= 2) TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "+" Strand: Mean Exp. Number 0.00786 Up.Conf.Int. 1 Found 1 129 TCTCCCGCC 137 (Mism.= 0) TFBS AC: RSP01024//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: R1 /BF: unknown BF Motifs on "+" Strand: Mean Exp. Number 0.00918 Up.Conf.Int. 1 Found 1 12 AGAAACT 18 (Mism.= 0) TFBS AC: RSP01025//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: R2 /BF: unknown BF Motifs on "+" Strand: Mean Exp. Number 0.00734 Up.Conf.Int. 1 Found 1 2 AGAATCT 8 (Mism.= 0) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 2 2 AGAATCTT 9 (Mism.= 1) 12 AGAAACTT 19 (Mism.= 0) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 2 2 AGAATCTT 9 (Mism.= 0) 12 AGAAACTT 19 (Mism.= 1) TFBS AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE II /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 113 CgCGCGTGGC 104 (Mism.= 1) TFBS AC: RSP01252//OS: carrot (Daucus carota) /GENE: Synthetic oligonucleotides/TFBS: DcE2F BS /BF: DcE2F Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 158 gcTTCCCGCGCTaTT 172 (Mism.= 3) TFBS AC: RSP01868//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: GARP BS 1 /BF: GARP transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 2 AGAATCTTC 10 (Mism.= 1) TFBS AC: RSP02208//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: P1BS (SmPT3) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 88 GAATATCC 95 (Mism.= 0) TFBS AC: RSP02212//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: P1BS (NtPT4) /BF: PHR1 (P1) Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 95 GGATATTC 88 (Mism.= 0) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 30 CcGAAAAATC 39 (Mism.= 1) TFBS AC: RSP02919//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PLA2-gamma/TFBS: gamma-MYB1 BS /BF: gamma-MYB1 Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 95 GGATATTC 88 (Mism.= 0) Totally 20 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0166..AC:AB013816..OS:Arabidopsis thaliana..GENE:DREB1B..PROD:DREB1B..[ -200: +51]..CDS:+180..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.24 C - 0.24 TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 57 ACGtGTGTCCTt 46 (Mism.= 2) TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00401 Up.Conf.Int. 1 Found 1 51 CACACGTC 58 (Mism.= 0) TFBS AC: RSP00143//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: CE3 /BF: TRAB1 Motifs on "-" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 58 GACGtGTGTC 49 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 102 TaCACGTGTC 111 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 110 ACACGTG 104 (Mism.= 0) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 153 TTaTCTCTCCT 163 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00851 Up.Conf.Int. 1 Found 1 162 GGAGAGAtA 154 (Mism.= 1) TFBS AC: RSP00887//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 223 AAGAATCTA 231 (Mism.= 0) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 102 TaCACGTGTC 111 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 111 gACACGTGtA 102 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 111 gACACGTGtA 102 (Mism.= 2) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 105 ACGTGTC 111 (Mism.= 0) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 103 ACACGTGT 110 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 110 ACACGTGT 103 (Mism.= 0) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 59 TGACGTGT 52 (Mism.= 0) TFBS AC: RSP01575//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: ICEr1 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 48 GGACACAcGTCAGA 61 (Mism.= 1) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 127 TtTTGTCTCT 118 (Mism.= 1) TFBS AC: RSP01662//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARR8 (At2g41310)/TFBS: C/G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 61 TcTGACGTGTgT 50 (Mism.= 2) TFBS AC: RSP01663//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARR9 (At3g57040)/TFBS: C-box (1) /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 61 TcTGACGTGTGt 50 (Mism.= 2) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 101 aTACACGTGTcA 112 (Mism.= 2) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 101 ATaCACGTGTCa 112 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00732 Up.Conf.Int. 1 Found 1 102 taCACGTGTC 111 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00784 Up.Conf.Int. 1 Found 1 111 GaCACGTGTa 102 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 102 tACACGTGTC 111 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 111 GACACGTGTa 102 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00985 Up.Conf.Int. 1 Found 1 102 taCACGTGTC 111 (Mism.= 2) TFBS AC: RSP02008//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 4 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 38 AAGGGTCAAAgg 49 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00985 Up.Conf.Int. 1 Found 1 111 gACACGTGTA 102 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 111 GACACGTG 104 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00732 Up.Conf.Int. 1 Found 1 102 TaCACGTGtC 111 (Mism.= 2) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 101 atACACGTGTCA 112 (Mism.= 2) TFBS AC: RSP02309//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.8) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 49 CCtTTGACCCtT 38 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 103 ACACGTGT 110 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 110 ACACGTGT 103 (Mism.= 0) TFBS AC: RSP02421//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 39-42 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00783 Up.Conf.Int. 1 Found 1 143 GGGGAGC 137 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 111 GACACGTGtA 102 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 102 tACACGTGTC 111 (Mism.= 1) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 110 ACACGTGTaT 101 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00985 Up.Conf.Int. 1 Found 1 102 TACACGTGTc 111 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 111 GACACGTGtA 102 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 111 GACACGTGTa 102 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00188 Up.Conf.Int. 1 Found 1 111 GACACGTGtA 102 (Mism.= 1) TFBS AC: RSP02525//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 94 ATGTACTA 101 (Mism.= 0) TFBS AC: RSP02566//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLD/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 75 ATCGTGGGAt 84 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 104 CACGTGTC 111 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 105 ACGTGTC 111 (Mism.= 0) TFBS AC: RSP02873//OS: Artemisia annua /GENE: DBR2/TFBS: WRKY BS2 /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00302 Up.Conf.Int. 1 Found 1 47 TTTGACCC 40 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00732 Up.Conf.Int. 1 Found 1 111 GACACGTGta 102 (Mism.= 2) TFBS AC: RSP02959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box A /BF: BZR1; ARF7 Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 221 tTCAAGTGTG 212 (Mism.= 1) Totally 49 motifs of 45 different TFBSs have been found ____________________________________________________________ >PLPR0167..AC:X54643..OS:Hordeum vulgare..GENE:Amy1..PROD:alpha amylase..[ -200: +51]..CDS:+57..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.19 C - 0.31 TFBS AC: RSP00035//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: D1 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 38 CAAAAGG 32 (Mism.= 0) TFBS AC: RSP00181//OS: barley (Hordeum vulgare) /GENE: Amy1/6-4/TFBS: GARE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 52 GGCCGATAACAAACTCCGGCC 72 (Mism.= 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 171 TATAAATACCtG 182 (Mism.= 1) TFBS AC: RSP01224//OS: rice (Oryza sativa) /GENE: Amy7 (Amy1A)/TFBS: GARE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 57 ATAACAAACTCCGG 70 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 170 CTATAAATA 178 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00948 Up.Conf.Int. 1 Found 1 170 CTATAAATAC 179 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00948 Up.Conf.Int. 1 Found 1 170 CTATAAATAC 179 (Mism.= 0) TFBS AC: RSP01797//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAS1/TFBS: AW-box 2 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 215 CATCGTACTCTTCG 228 (Mism.= 2) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00770 Up.Conf.Int. 1 Found 1 116 TCGTGTGC 109 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 171 TATAAATA 178 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0168..AC:X57698..OS:Arabidopsis thaliana..GENE:ACP A1..PROD:acyl carrier protein..[ -200: +51]..CDS:+74..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.15 G - 0.13 T - 0.45 C - 0.27 TFBS AC: RSP00307//OS: barley (Hordeum vulgare) /GENE: Chi26/TFBS: GCCAAG motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 55 GCCAAG 60 (Mism.= 0) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00063 Up.Conf.Int. 1 Found 1 56 CCAAGCAcCA 65 (Mism.= 1) TFBS AC: RSP01085//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE2 /BF: HaDREB2 Motifs on "+" Strand: Mean Exp. Number 0.00502 Up.Conf.Int. 1 Found 1 46 ACCGTCACT 54 (Mism.= 1) TFBS AC: RSP02005//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 2 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 34 CcTATGACAAgA 23 (Mism.= 2) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0169..AC:M63223..OS:Triticum aestivum..GENE:germin 9f-2.8..PROD:germin..[ -200: +51]..CDS:+106..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.26 C - 0.31 TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 118 CaTGTCGTCA 109 (Mism.= 1) TFBS AC: RSP00150//OS: maize (Zea mays) /GENE: C1/TFBS: ABRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 118 CaTGTCGTCacTGCAT 103 (Mism.= 3) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 39 GCCACGcAAG 48 (Mism.= 1) TFBS AC: RSP00349//OS: maize, Zea mays /GENE: C1/TFBS: Sph-core /BF: VP1 (VIVAPAROUS1) Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 140 TCCATGCAT 148 (Mism.= 0) TFBS AC: RSP00595//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: box II EE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 129 GCTTAATTA 137 (Mism.= 0) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 205 TGAGTGAATG 196 (Mism.= 2) TFBS AC: RSP00969//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: Aux28B2 /BF: STGA1 Motifs on "+" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 108 gTGACGACAt 117 (Mism.= 2) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 95 CAAATGGAcA 86 (Mism.= 1) TFBS AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE III /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 48 CtTGCGTGGC 39 (Mism.= 1) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00665 Up.Conf.Int. 1 Found 1 26 GGCCACT 20 (Mism.= 0) TFBS AC: RSP02542//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN2/TFBS: WUS BS 2 (KAN2) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 47 AGTAATAT 54 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0170..AC:J05208..OS:Glycine max..GENE:SbPRP2..PROD:cell wall protein SbPRP2..[ -200: +51]..CDS:+30..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.25 C - 0.24 TFBS AC: RSP00442//OS: maize /GENE: cyPPDK1/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 23 cAACTTTGCA 32 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00188 Up.Conf.Int. 1 Found 1 175 TATAAAaACCAG 186 (Mism.= 1) TFBS AC: RSP00742//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 2r /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00371 Up.Conf.Int. 1 Found 1 106 GCACCGTTgtAC 95 (Mism.= 2) TFBS AC: RSP01079//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L1 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 49 ATTCACCTACaC 60 (Mism.= 1) TFBS AC: RSP01602//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00289 Up.Conf.Int. 1 Found 1 144 TCTCAATC 137 (Mism.= 0) TFBS AC: RSP01744//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCMPG1 (At3g02840)/TFBS: WRKY11 BS /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 84 GATTGACCTTTG 95 (Mism.= 2) TFBS AC: RSP01747//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtWRKY11 (At4g31550)/TFBS: WRKY11 BS1 /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 83 aGATTGACCTTTg 95 (Mism.= 2) TFBS AC: RSP02092//OS: Petunia hybrida /GENE: SSU8/TFBS: GT-motif (LRE) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 79 GTGTGGATtTTcAA 66 (Mism.= 2) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 94 AAAGGTCAATct 83 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0171..AC:D21160..OS:Oryza sativa..GENE:Osg6B..PROD:anther specific protein..[ -200: +51]..CDS:+76..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.24 C - 0.25 TFBS AC: RSP00543//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: GT-1-like K /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 166 AGGCATT 172 (Mism.= 0) TFBS AC: RSP00595//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: box II EE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 243 GCTTAATTA 235 (Mism.= 0) TFBS AC: RSP00749//OS: Catharanthus roseus /GENE: STR/TFBS: BN /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 73 AgTTTGTAATTA 62 (Mism.= 1) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00674 Up.Conf.Int. 1 Found 1 128 GTTGAAGTGA 119 (Mism.= 1) TFBS AC: RSP01208//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 47 CCACTGTTTTTG 36 (Mism.= 2) TFBS AC: RSP02170//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp4/I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 107 GATCAAA 101 (Mism.= 0) TFBS AC: RSP02896//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 106 AtCAAACAT 98 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0172..AC:Z68152..OS:Gossypium hirsutum..GENE:Chi2;1..PROD:chitinase..[ -200: +51]..CDS:+45..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.12 T - 0.32 C - 0.25 TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 197 TCCACGTCcC 206 (Mism.= 1) TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 23 AAGATAAGA 31 (Mism.= 0) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 146 TTCTCTCTCCT 156 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 155 GGAGAGAGA 147 (Mism.= 0) TFBS AC: RSP01138//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region C /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 204 GACGTGGATTTC 193 (Mism.= 1) TFBS AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 52 CTTTTTTTAG 43 (Mism.= 1) TFBS AC: RSP01261//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS8 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00545 Up.Conf.Int. 1 Found 1 214 TTACGTGT 207 (Mism.= 0) TFBS AC: RSP01473//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00142 Up.Conf.Int. 1 Found 1 16 AACAAATTGGATT 4 (Mism.= 2) TFBS AC: RSP01505//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 30 GATCGGACt 38 (Mism.= 1) TFBS AC: RSP01506//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 30 GATCGGACt 38 (Mism.= 1) TFBS AC: RSP01712//OS: tomato (Solanum lycopersicum) /GENE: LeACS2/TFBS: RIN BS /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 43 CTAAAAAAAG 52 (Mism.= 0) TFBS AC: RSP01713//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PIN1 (At1g73590)/TFBS: C/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 205 CcACACGTAAAa 216 (Mism.= 2) TFBS AC: RSP01725//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 205 ccACACGTAAAA 216 (Mism.= 2) TFBS AC: RSP02158//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: ACE5 /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 200 ACGT 203 -- 5-- 209 ACGT 212 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 212 ACGT 209 -- 5-- 203 ACGT 200 (Mism.= 0/ 0) TFBS AC: RSP02160//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PP2C (At5g59220)/TFBS: ACE5 (PP2C) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 200 ACGT 203 -- 5-- 209 ACGT 212 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 212 ACGT 209 -- 5-- 203 ACGT 200 (Mism.= 0/ 0) TFBS AC: RSP02192//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 43 CTAAAAAAAG 52 (Mism.= 0) TFBS AC: RSP02387//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: Oct(II) /BF: NtWLIM2 Motifs on "+" Strand: Mean Exp. Number 0.00439 Up.Conf.Int. 1 Found 1 173 ATCACcCtGATC 184 (Mism.= 2) Totally 19 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0173..AC:AB004819..OS:Oryza sativa..GENE:rep1..PROD:cysteine endopeptidase..[ -200: +51]..CDS:+120..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.14 T - 0.24 C - 0.40 TFBS AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: AT-rich motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00899 Up.Conf.Int. 1 Found 1 126 TTTAAAT 132 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 131 TTTAAAT 125 (Mism.= 0) TFBS AC: RSP00180//OS: barley (Hordeum vulgare) /GENE: EPB-1/TFBS: GARE-4 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00563 Up.Conf.Int. 1 Found 1 120 GTAACAGAAaGaTGc 106 (Mism.= 3) TFBS AC: RSP00354//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 53 TAACGTAG 60 (Mism.= 0) TFBS AC: RSP00355//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 119 TAACAGAA 112 (Mism.= 0) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 162 TATAAAT 168 (Mism.= 0) TFBS AC: RSP01004//OS: snapdragon (Antirrhinum majus) /GENE: DEFH125/TFBS: CArG2 /BF: DEF/GLO Motifs on "-" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 132 AtTTAAATGG 123 (Mism.= 1) TFBS AC: RSP01025//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: R2 /BF: unknown BF Motifs on "+" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 13 AGAATCT 19 (Mism.= 0) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 13 AGAATCTT 20 (Mism.= 1) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 13 AGAATCTT 20 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 161 CTATAAATA 169 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 161 CTATAAATAC 170 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 161 CTATAAATAC 170 (Mism.= 0) TFBS AC: RSP01714//OS: Arabidopsis (Arabidopsis thaliana) /GENE: REH1/PIN3 (At1g70940)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00289 Up.Conf.Int. 1 Found 1 176 GGagACGTATTT 165 (Mism.= 2) TFBS AC: RSP01868//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: GARP BS 1 /BF: GARP transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 13 AGAATCTTc 21 (Mism.= 1) TFBS AC: RSP02738//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: LOB BS /BF: LOB Motifs on "-" Strand: Mean Exp. Number 0.00439 Up.Conf.Int. 1 Found 1 153 TTGCGGCGGGA 143 (Mism.= 0) TFBS AC: RSP02766//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ATAF1 BS /BF: ATAF1 Motifs on "+" Strand: Mean Exp. Number 0.00717 Up.Conf.Int. 1 Found 1 34 AACTCACGTA 43 (Mism.= 2) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 162 TATAAATA 169 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 61 GCtACGTtAGC 51 (Mism.= 2) TFBS AC: RSP02953//OS: maize (Zea mays) /GENE: SHR2/TFBS: E2F1 BS /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 143 TCCCGCCGCA 152 (Mism.= 1) Totally 20 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0174..AC:X63700..OS:Pisum sativum..GENE:PsNOD6..PROD:nodulin..[ -200: +51]..CDS:+21..TSS+1211 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.39 C - 0.10 TFBS AC: RSP00646//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C1-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 210 GAAAaTAAAtATGG 223 (Mism.= 2) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 233 TCAaATGTGT 242 (Mism.= 1) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 45 AAAGGCAA 52 (Mism.= 0) TFBS AC: RSP02959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box A /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 232 CTCAAaTGTG 241 (Mism.= 1) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0175..AC:X12512..OS:Nicotiana plumbaginifolia..GENE:Cab-E..PROD:chlorophyll a/..[ -200: +51]..TSS+1555 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.31 C - 0.16 TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 69 GCCAAaTGGA 78 (Mism.= 1) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00455 Up.Conf.Int. 1 Found 1 88 AAAAGGTTAAAA 99 (Mism.= 0) TFBS AC: RSP00742//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 2r /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 60 GCACCGTTAAAC 49 (Mism.= 0) TFBS AC: RSP00961//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: PB1 /BF: BPBF Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 85 TGCAAAAG 92 (Mism.= 0) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 216 GTTGATTTGA 207 (Mism.= 1) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 71 CAAATGGAcA 80 (Mism.= 1) TFBS AC: RSP01445//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-2 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00737 Up.Conf.Int. 1 Found 1 132 aTCTATAtCTACTtT 118 (Mism.= 3) TFBS AC: RSP01631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZCP4/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 238 CTTGAATGCAC 228 (Mism.= 2) TFBS AC: RSP01635//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 157 CTGTAAAGCCA 167 (Mism.= 2) TFBS AC: RSP01636//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP2/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 157 CTGTAAAGCCA 167 (Mism.= 2) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 157 CTGTAAAGCCA 167 (Mism.= 2) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 227 AAAAAGAAA 219 (Mism.= 0) TFBS AC: RSP02182//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp23/IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 113 ATTGAAAAG 121 (Mism.= 0) TFBS AC: RSP02684//OS: rice (Oryza sativa) /GENE: STAR1/TFBS: ASR5 BS /BF: ASR5 Motifs on "+" Strand: Mean Exp. Number 0.00712 Up.Conf.Int. 1 Found 1 188 AGCCCAT 194 (Mism.= 0) TFBS AC: RSP02711//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 3 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 156 GCCcAAAGaCC 146 (Mism.= 2) TFBS AC: RSP02858//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00889 Up.Conf.Int. 1 Found 1 152 TGGGCC 157 (Mism.= 0) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0176..AC:X67662..OS:Madagascar periwinkle..GENE:tdc..PROD:tryptophan decarboxylase..[ -200: +51]..CDS:+122..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.12 T - 0.35 C - 0.20 TFBS AC: RSP00020//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box6 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 39 GTCGAGTAAAAA 50 (Mism.= 0) TFBS AC: RSP00021//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box7 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00405 Up.Conf.Int. 1 Found 1 57 AAAAAGTAAAAA 68 (Mism.= 0) TFBS AC: RSP00441//OS: maize /GENE: cyPPDK1/TFBS: box a /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 189 AACAAAGTtT 198 (Mism.= 1) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00194 Up.Conf.Int. 1 Found 1 56 aAAAAAGtAAAAaCAA 71 (Mism.= 3) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 2 73 TTTTGtTTTTaCTTTt 58 (Mism.= 3) 67 TTTTaCTTTTTtTTTt 52 (Mism.= 3) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 10 251 AGAGAGAGA 243 (Mism.= 0) 249 AGAGAGAGA 241 (Mism.= 0) 247 AGAGAGAGA 239 (Mism.= 0) 245 AGAGAGAGA 237 (Mism.= 0) 243 AGAGAGAGA 235 (Mism.= 0) 241 AGAGAGAGA 233 (Mism.= 0) 239 AGAGAGAGA 231 (Mism.= 0) 237 AGAGAGAGA 229 (Mism.= 0) 235 AGAGAGAGA 227 (Mism.= 0) 233 AGAGAGAGA 225 (Mism.= 0) TFBS AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic oligonucleotides/TFBS: ZPT2-2 BS 2 /BF: ZPT2-2 Motifs on "+" Strand: Mean Exp. Number 0.00929 Up.Conf.Int. 1 Found 1 120 CAGT 123 --10-- 134 TGCT 137 (Mism.= 0/ 0) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 102 AaACGTGG 109 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 8 250 GAGAGAGAGAGAGAGAg 234 (Mism.= 1) 248 GAGAGAGAGAGAGAGAg 232 (Mism.= 1) 246 GAGAGAGAGAGAGAGAg 230 (Mism.= 1) 244 GAGAGAGAGAGAGAGAg 228 (Mism.= 1) 242 GAGAGAGAGAGAGAGAg 226 (Mism.= 1) 240 GAGAGAGAGAGAGAGAA 224 (Mism.= 0) 238 GAGAGAGAGAGAGAaAt 222 (Mism.= 2) 236 GAGAGAGAGAGAaAtgA 220 (Mism.= 3) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 145 TGcTGCTTTTCTgTa 159 (Mism.= 3) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 111 TTcCACGTtTAA 100 (Mism.= 2) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 110 TCCACGT 104 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 8 222 ATTTCTCTCTCTCTCT 237 (Mism.= 2) 224 TTCTCTCTCTCTCTCT 239 (Mism.= 1) 226 CTCTCTCTCTCTCTCT 241 (Mism.= 0) 228 CTCTCTCTCTCTCTCT 243 (Mism.= 0) 230 CTCTCTCTCTCTCTCT 245 (Mism.= 0) 232 CTCTCTCTCTCTCTCT 247 (Mism.= 0) 234 CTCTCTCTCTCTCTCT 249 (Mism.= 0) 236 CTCTCTCTCTCTCTCT 251 (Mism.= 0) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00962 Up.Conf.Int. 1 Found 1 109 CCACGT 104 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00962 Up.Conf.Int. 1 Found 1 109 CCACGT 104 (Mism.= 0) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00962 Up.Conf.Int. 1 Found 1 104 ACGTGG 109 (Mism.= 0) Totally 40 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0177..AC:U81368.1..OS:Arabidopsis thaliana..GENE:AGL3..PROD:nitrate reductase..[ -200: +51]..CDS:+356..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.42 G - 0.12 T - 0.34 C - 0.11 TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00984 Up.Conf.Int. 1 Found 1 45 AAaAtTAATAATAATAtATA 64 (Mism.= 3) TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "-" Strand: Mean Exp. Number 0.00302 Up.Conf.Int. 1 Found 1 40 TACACTTTTGt 30 (Mism.= 1) TFBS AC: RSP00307//OS: barley (Hordeum vulgare) /GENE: Chi26/TFBS: GCCAAG motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00833 Up.Conf.Int. 1 Found 1 197 GCCAAG 202 (Mism.= 0) TFBS AC: RSP00646//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 22 GAAAaTAAAAATtG 9 (Mism.= 2) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 221 CAAAACCAA 229 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 121 TTTATAATaTTTT 133 (Mism.= 1) TFBS AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE III /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 206 CATtCtTGGC 197 (Mism.= 2) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00971 Up.Conf.Int. 1 Found 1 207 CCATTCTTGG 198 (Mism.= 2) TFBS AC: RSP01621//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E4 /BF: GmDof4; GmDof22 Motifs on "-" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 40 TACACTTTTG 31 (Mism.= 0) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "-" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 160 AAACtTtCCTTT 149 (Mism.= 2) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00918 Up.Conf.Int. 1 Found 1 44 cTTTTACACT 35 (Mism.= 1) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 196 GGCCAAGA 203 (Mism.= 0) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 207 CCATTCTTGG 198 (Mism.= 1) TFBS AC: RSP02416//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 88-91 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 219 AGAGATGC 212 (Mism.= 0) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "+" Strand: Mean Exp. Number 0.00419 Up.Conf.Int. 1 Found 1 221 CaAAACCAAC 230 (Mism.= 1) TFBS AC: RSP02931//OS: maize (Zea mays) /GENE: GRMZM2G091201/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00629 Up.Conf.Int. 1 Found 1 205 TGGCtTaGCA 214 (Mism.= 2) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0178..AC:X61937.1..OS:Brassica napus..GENE:oleosin BN-III..PROD:chloroplastic ribosomal protein S1..[ -200: +51]..CDS:+75..TSS:201 (+1) # Alternative TSS(s): +4 +52 +55 |Taxon: Dicot |Promot Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.31 C - 0.26 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 114 ACACGTGGC 122 (Mism.= 0) TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 52 AaaCGTGTCCTC 63 (Mism.= 2) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 116 ACGTGGCGT 124 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 115 CACGTGGC 122 (Mism.= 0) TFBS AC: RSP00202//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE GRA /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 101 CATGCaGCC 93 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 113 aACACGTGGC 122 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 112 TaACACGTGGCg 123 (Mism.= 2) TFBS AC: RSP00233//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS5 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "-" Strand: Mean Exp. Number 0.00288 Up.Conf.Int. 1 Found 1 127 TCTACGcCAC 118 (Mism.= 1) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 48 TTgtTCCAATGG 37 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00969 Up.Conf.Int. 1 Found 1 114 ACACGTG 120 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 115 CACGTGGC 122 (Mism.= 0) TFBS AC: RSP00819//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: ACE-core (AtF3H) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 122 GCCACGTgTT 113 (Mism.= 1) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 217 AAAATATAT 225 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 123 cGCCACGTGTtA 112 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 122 gCCACGTGTt 113 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 116 ACGTGGC 122 (Mism.= 0) TFBS AC: RSP01106//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rHex /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 124 ACGCCACGTGT 114 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 114 ACACGTGG 121 (Mism.= 0) TFBS AC: RSP01277//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: Box IV /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00200 Up.Conf.Int. 1 Found 1 164 CTTCtCTTcATaTATC 179 (Mism.= 3) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00567 Up.Conf.Int. 1 Found 1 115 CACGTGGC 122 (Mism.= 0) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "+" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 228 acATcCTTTTCTCTT 242 (Mism.= 3) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 122 GCCACGTGTt 113 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 113 aACACGTGgC 122 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 122 GcCACGTGTt 113 (Mism.= 2) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 112 TaACACGTGGCg 123 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00765 Up.Conf.Int. 1 Found 1 122 gCCACGTGTt 113 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 113 AACACGTGgC 122 (Mism.= 1) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 113 AACACGTGGC 122 (Mism.= 2) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 2 96 TGCATGGTG 104 (Mism.= 0) 129 TGCATGACG 137 (Mism.= 1) TFBS AC: RSP02235//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY-RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 96 TGCATG 101 --27-- 129 TGCATG 134 (Mism.= 0/ 0) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "+" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 114 ACACGTGGC 122 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 155 CTCTCTtTCctTCTCT 170 (Mism.= 3) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 122 GCCACGTGTT 113 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 113 aACACGTGGc 122 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 113 aACACGTGGc 122 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 122 GcCACGTGTT 113 (Mism.= 1) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 116 ACGTGGC 122 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 113 aACACGTGgC 122 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 113 AACACGTGGC 122 (Mism.= 0) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 51 CAAACGTGTC 60 (Mism.= 0) TFBS AC: RSP02947//OS: maize (Zea mays) /GENE: NAD(P)-binding protein/TFBS: GBF6 BS/1 /BF: GBF6 Motifs on "+" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 116 ACGTGGCGt 124 (Mism.= 1) Totally 42 motifs of 40 different TFBSs have been found ____________________________________________________________ >PLPR0179..AC:AF013115..OS:Arabidopsis thaliana..GENE:CAO..PROD:CAO, chloroplast targeted regulatory gactor..[ -200: +51]..CDS:+16..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.34 C - 0.17 TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "-" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 244 GTATCCATG 236 (Mism.= 0) TFBS AC: RSP00700//OS: Brassica oleracea /GENE: SLG13/TFBS: Box V /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00241 Up.Conf.Int. 1 Found 1 120 ATTTTAgaTGTCTGCa 105 (Mism.= 3) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 62 AAAAtGTTAAAA 73 (Mism.= 1) TFBS AC: RSP00887//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (1) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 83 AAGAATCTA 75 (Mism.= 0) TFBS AC: RSP00961//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: PB1 /BF: BPBF Motifs on "+" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 217 TGCAAAAG 224 (Mism.= 0) TFBS AC: RSP01058//OS: Brassica napus /GENE: extA/TFBS: GT-3a Box III /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00559 Up.Conf.Int. 1 Found 1 160 TAGTGGAT 153 (Mism.= 0) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 236 GGCCAAGA 229 (Mism.= 0) TFBS AC: RSP02446//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS1 /BF: HB05; HB12 Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 135 CAATCATTT 127 (Mism.= 0) TFBS AC: RSP02698//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: I box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 157 tGGATAAGAA 148 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0180..AC:AF062372..OS:Arabidopsis thaliana..GENE:RHL1..PROD:ROOT HAIRLESS 1..[ -200: +51]..CDS:+68..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.15 T - 0.39 C - 0.16 TFBS AC: RSP00830//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: RRE (AtCHS) /BF: BHLH factors R, C1, Sn Motifs on "+" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 13 aTTCATCTGaCC 24 (Mism.= 2) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "+" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 1 99 tAAAGTTgGTTA 110 (Mism.= 2) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "+" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 181 CCTTTTTTTG 190 (Mism.= 1) TFBS AC: RSP01598//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00495 Up.Conf.Int. 1 Found 1 166 TGTCATTT 159 (Mism.= 0) TFBS AC: RSP02001//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 4 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 16 cATCTGACCTTT 27 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 146 GAAGAAGAA 138 (Mism.= 0) TFBS AC: RSP02768//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC055 BS /BF: ANAC055 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 68 AAGTaACGTG 77 (Mism.= 1) TFBS AC: RSP02769//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC019 BS /BF: ANAC019 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 68 AAGTaACGTG 77 (Mism.= 1) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00786 Up.Conf.Int. 1 Found 2 169 AAAtGTCAtTTG 158 (Mism.= 2) 27 AAAGGTCAgaTG 16 (Mism.= 2) Totally 10 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0181..AC:AF198177..OS:Lycopersicon esculentum..GENE:Asc..PROD:ASC1..[ -200: +51]..CDS:+20..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.27 C - 0.21 TFBS AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/TFBS: Box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 32 AGAATTATTcAA 43 (Mism.= 1) TFBS AC: RSP00629//OS: arabidopsis (Arabidopsis thaliana) /GENE: Lhcb1*3/TFBS: CCA1 BS2 /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 201 AAAAATCT 194 (Mism.= 0) TFBS AC: RSP00645//OS: tobacco (Nicotiana tabacum) /GENE: prxC2/TFBS: box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 32 AGAATTATTcAA 43 (Mism.= 1) TFBS AC: RSP00735//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CCA1 BS /BF: DET1; CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00448 Up.Conf.Int. 1 Found 1 23 AAAAATCA 16 (Mism.= 0) TFBS AC: RSP01712//OS: tomato (Solanum lycopersicum) /GENE: LeACS2/TFBS: RIN BS /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 24 CTAAAAAAAG 33 (Mism.= 0) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00357 Up.Conf.Int. 1 Found 1 145 TTCATTTGAa 154 (Mism.= 1) TFBS AC: RSP02098//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE4 /BF: tomato HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 41 GAATAATTC 33 (Mism.= 0) TFBS AC: RSP02192//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 24 CTAAAAAAAG 33 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 167 GAAGAAGAA 175 (Mism.= 0) TFBS AC: RSP02515//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-1 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 55 CGGAAgTTTCgA 44 (Mism.= 2) TFBS AC: RSP02864//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Zat12/TFBS: bZIP29 BS /BF: bZIP29 Motifs on "-" Strand: Mean Exp. Number 0.00949 Up.Conf.Int. 1 Found 1 245 GCAGCG 240 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0182..AC:AF217547..OS:Arabidopsis thaliana..GENE:calmodulin-binding protein..PROD:calmodulin-binding protein..[ -200: +51]..CDS:+165..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.16 T - 0.31 C - 0.18 TFBS AC: RSP00017//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF3-BE /BF: SEF3, soybean Embryo Factor 3 Motifs on "-" Strand: Mean Exp. Number 0.00529 Up.Conf.Int. 1 Found 3 190 AACCCA 185 --23-- 161 AgCCCA 156 (Mism.= 0/ 1) 190 AACCCA 185 --29-- 155 AgCCCA 150 (Mism.= 0/ 1) 184 AACCCA 179 --23-- 155 AgCCCA 150 (Mism.= 0/ 1) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 226 TTAGGGTTT 218 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 218 AAACCCTAA 226 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 226 TTAGGGTTT 218 (Mism.= 0) TFBS AC: RSP00706//OS: arabidopsis (Arabidopsis thaliana) /GENE: ARK3/TFBS: W-box /BF: trnascription factors of WRKY family Motifs on "-" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 174 ttTTGACTGATA 163 (Mism.= 2) TFBS AC: RSP00855//OS: arabidopsis (Arabidopsis thaliana) /GENE: FIL/TFBS: 12 bp element /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 128 tACGaGTGAATG 117 (Mism.= 2) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 217 TAAACCCTAA 226 (Mism.= 0) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 217 TaAACCCTAA 226 (Mism.= 1) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 218 AAACCCTA 225 (Mism.= 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 225 TAGGGTTT 218 (Mism.= 0) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 86 TTCTTTCA 93 (Mism.= 0) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 218 AAACCCTAA 226 (Mism.= 0) Totally 14 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0183..AC:AF234174..OS:Arabidopsis thaliana..GENE:HRT..PROD:viral resistance protein..[ -200: +51]..CDS:+47..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.39 C - 0.16 TFBS AC: RSP00496//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: "2 TGAGCT" element /BF: ASF-1 (tobacco); OCSTF; Motifs on "-" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 113 TaAGCT 108 -- 8-- 99 ACcTCA 94 (Mism.= 1/ 1) TFBS AC: RSP00530//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 2 TCTcTTTTAACT 13 (Mism.= 1) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 87 GTTGACTTGA 96 (Mism.= 1) TFBS AC: RSP01192//OS: Tobacco; Nicotiana tabacum /GENE: Adh2/TFBS: D-box /BF: D factor Motifs on "-" Strand: Mean Exp. Number 0.00912 Up.Conf.Int. 1 Found 1 198 CAAGGGTACA 189 (Mism.= 2) TFBS AC: RSP01746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At4CL4 (At3g21230)/TFBS: WRKY11 BS2 /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 105 aAGTTGACCTCaA 93 (Mism.= 2) TFBS AC: RSP02035//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YUC8 (At4g28720)/TFBS: STY1 BS (YUC8) /BF: STY1 Motifs on "-" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 119 aAACTCTAAGC 109 (Mism.= 1) TFBS AC: RSP02076//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS2 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 201 CGCCAAGG 194 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0184..AC:AF279129..OS:Arabidopsis thaliana..GENE:FIN219..PROD:FIN219..[ -200: +51]..CDS:+505..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.32 C - 0.27 TFBS AC: RSP00163//OS: soybean (Glycine max) /GENE: synthetic oligonucleotides/TFBS: DR5 /BF: ARF1 Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 177 CCTTTTtTCTC 187 (Mism.= 1) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 30 gAAAAAGAGA 39 (Mism.= 1) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 41 cTTctCTTTTTCTTTC 26 (Mism.= 3) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 32 TTCTtTCTCCg 22 (Mism.= 2) TFBS AC: RSP00735//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CCA1 BS /BF: DET1; CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00783 Up.Conf.Int. 1 Found 1 4 AAAAATCA 11 (Mism.= 0) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 25 AGAAAGAAA 33 (Mism.= 0) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 2 25 AGAAAGAaA 33 (Mism.= 1) 40 AGAtAGAGA 48 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 245 AGAAAGAGA 237 (Mism.= 0) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 25 AGAAAGaAA 33 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 2 40 AGAtAGAGA 48 (Mism.= 1) 44 AGAGAGAtA 52 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 4 198 AGAGAGAGA 190 (Mism.= 0) 196 AGAGAGAGA 188 (Mism.= 0) 194 AGAGAGAGA 186 (Mism.= 0) 192 AGAGAGAGA 184 (Mism.= 0) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 18 CCGTcGGAG 26 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 24 GAGAaAGAaAaAGAGAA 40 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 6 250 GAGtGAGAaAGAGAGAg 234 (Mism.= 3) 248 GtGAGAaAGAGAGAGtA 232 (Mism.= 3) 201 GAtAGAGAGAGAGAGAg 185 (Mism.= 2) 199 tAGAGAGAGAGAGAGAA 183 (Mism.= 1) 197 GAGAGAGAGAGAGAaAA 181 (Mism.= 1) 195 GAGAGAGAGAGAaAaAA 179 (Mism.= 2) TFBS AC: RSP01480//OS: soybean (Glycine max) /GENE: GS15/TFBS: AT-cm /BF: AT-1SNBP Motifs on "-" Strand: Mean Exp. Number 0.00919 Up.Conf.Int. 1 Found 1 126 TATTTTAT 119 (Mism.= 0) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00620 Up.Conf.Int. 1 Found 1 113 CAAAAATTGG 104 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00736 Up.Conf.Int. 1 Found 7 179 tTtTtTCTCTCTCTCT 194 (Mism.= 3) 181 tTtTCTCTCTCTCTCT 196 (Mism.= 2) 183 tTCTCTCTCTCTCTCT 198 (Mism.= 1) 185 CTCTCTCTCTCTCTaT 200 (Mism.= 1) 187 CTCTCTCTCTCTaTCc 202 (Mism.= 2) 234 CTCTCTCTtTCTCaCT 249 (Mism.= 2) 236 CTCTCTtTCTCaCTCc 251 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 178 GGAGTGAGAG 169 (Mism.= 1) TFBS AC: RSP02841//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HY5/TFBS: ACG-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 57 TAACGGC 63 (Mism.= 0) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "-" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 30 CTTTCtCC 23 (Mism.= 1) TFBS AC: RSP02973//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI1/TFBS: O-box (ABI1) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 97 gcTCCGTCCAAT 108 (Mism.= 2) Totally 37 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0185..AC:AJ131214..OS:Arabidopsis thaliana..GENE:srp30..PROD:SF2/ASF-like splicing modulator Srp30..[ -200: +51]..CDS:+123..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.31 C - 0.22 TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 229 TTcTtCTTcTTCTTTC 244 (Mism.= 3) TFBS AC: RSP00628//OS: arabidopsis (Arabidopsis thaliana) /GENE: Lhcb1*3/TFBS: CCA1 BS1 /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 1 203 AACAATCT 210 (Mism.= 0) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "-" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 240 GAAGaAgaAGAAGAT 226 (Mism.= 3) TFBS AC: RSP01755//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS1 /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00092 Up.Conf.Int. 1 Found 1 190 CAACCACC 183 (Mism.= 0) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 1 85 CGGCCCA 79 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 2 240 GAAGAAGAA 232 (Mism.= 0) 237 GAAGAAGAA 229 (Mism.= 0) TFBS AC: RSP02710//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 2 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 202 cTGGAAAGGAG 192 (Mism.= 1) Totally 8 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0186..AC:AY057441..OS:Arabidopsis thaliana..GENE:CRY2..PROD:cryptochrome 2..[ -200: +51]..CDS:+70..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.19 T - 0.45 C - 0.12 TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 1 TTTTGaTTTTTgTTTC 16 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00100 Up.Conf.Int. 1 Found 1 80 AGAGAGAGA 72 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00651 Up.Conf.Int. 1 Found 1 80 aGAGAGAGA 72 (Mism.= 1) TFBS AC: RSP01063//OS: arabidopsis (Arabidopsis thaliana) /GENE: Nia2/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00626 Up.Conf.Int. 1 Found 1 146 ATGATtGATAAg 135 (Mism.= 2) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 27 TTCAaTTGAG 18 (Mism.= 1) TFBS AC: RSP02289//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: ATCT-motif /BF: 63-kDa TF; 52-kDa (b3-domain) TF Motifs on "+" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 65 AATCgAATCTc 75 (Mism.= 2) TFBS AC: RSP02839//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ARR10 BS2 /BF: ARR10 Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 74 AGATTCG 68 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0187..AC:AJ003142..OS:Lycopersicon esculentum..GENE:vsf-1..PROD:transcription factor VSF-1..[ -200: +51]..CDS:+237..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.12 T - 0.41 C - 0.27 TFBS AC: RSP00015//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtCDC6/TFBS: E2F1-BE /BF: E2F1 Motifs on "-" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 32 TTTCCCGC 25 (Mism.= 0) TFBS AC: RSP00127//OS: Eucalyptus gunnii /GENE: CCR/TFBS: BS1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00240 Up.Conf.Int. 1 Found 1 24 AGCGGG 29 (Mism.= 0) TFBS AC: RSP00165//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fa /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 32 TTTCCCGC 25 (Mism.= 0) TFBS AC: RSP00166//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fb /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 32 TTTcCCGC 25 (Mism.= 1) TFBS AC: RSP00298//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-1 /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 32 TTTCCCGC 25 (Mism.= 0) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 230 CCAAaCAACA 221 (Mism.= 1) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "-" Strand: Mean Exp. Number 0.00899 Up.Conf.Int. 1 Found 1 114 CAAACGTgCA 105 (Mism.= 1) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 114 CAaACGTGCa 105 (Mism.= 2) TFBS AC: RSP01153//OS: maize (Zea mays) /GENE: Em/TFBS: Em1c /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 114 CAAACGTgCA 105 (Mism.= 1) TFBS AC: RSP01435//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: BoxII /BF: RNFG2 Motifs on "-" Strand: Mean Exp. Number 0.00186 Up.Conf.Int. 1 Found 1 233 aCCCCAAaCA 224 (Mism.= 2) TFBS AC: RSP02318//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CENH3/TFBS: E2F BS /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 25 GCGGGAAA 32 (Mism.= 0) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00872 Up.Conf.Int. 1 Found 1 154 GTCAAAAT 147 (Mism.= 0) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0188..AC:AJ243829..OS:Oryza sativa..GENE:RPA..PROD:protein phosphatase 2A A subunit..[ -200: +51]..CDS:+27..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.22 T - 0.39 C - 0.14 TFBS AC: RSP00159//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D4-core /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 185 TAGTGCTcT 177 (Mism.= 1) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 47 cTTGATTTTGTGAgTT 62 (Mism.= 2) TFBS AC: RSP01297//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Inr element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 232 aGCCATCAG 224 (Mism.= 1) TFBS AC: RSP01973//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 120 ACCGTGcCT 128 (Mism.= 1) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 166 cCAATGACCAtA 177 (Mism.= 2) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 120 TTCCATCAgaGAA 108 (Mism.= 2) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "-" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 200 GTAAAGAAAGAA 189 (Mism.= 0) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 88 AAAGGTCAAgaG 77 (Mism.= 2) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0189..AC:AB013448..OS:Oryza sativa..GENE:PIB..PROD:Pib..[ -200: +51]..CDS:+82..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.24 T - 0.28 C - 0.20 TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "-" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 229 GCCACCTC 222 (Mism.= 0) TFBS AC: RSP00475//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS5 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 171 AAAtCcGTGCTG 182 (Mism.= 2) TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 123 TGGATTtTGTG 113 (Mism.= 1) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00558 Up.Conf.Int. 1 Found 1 71 CAGAATAA 64 (Mism.= 0) TFBS AC: RSP00847//OS: maize (Zea mays) /GENE: H3C4/TFBS: NON /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 228 CCACCTCcTC 219 (Mism.= 1) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 216 CAAATGcAGA 207 (Mism.= 1) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 216 CAAATGcAGA 207 (Mism.= 1) TFBS AC: RSP01635//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00712 Up.Conf.Int. 1 Found 1 236 CTGCAAGGCCA 226 (Mism.= 2) TFBS AC: RSP02101//OS: maize (Zea mays) /GENE: A1/TFBS: P (-118) element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 230 CTTGCAGCTT 239 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0190..AC:AB024054..OS:Oryza sativa..GENE:OsENOD40..PROD:OsENOD40..[ -200: +51]..CDS:+92..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.22 T - 0.29 C - 0.19 TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00514 Up.Conf.Int. 1 Found 1 208 AgAGAAATCAA 198 (Mism.= 1) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "+" Strand: Mean Exp. Number 0.00639 Up.Conf.Int. 1 Found 1 227 ATCAgCAACC 236 (Mism.= 1) TFBS AC: RSP02550//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR1/TFBS: E0-1-1 /BF: CBNAC Motifs on "-" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 145 ATGCTTAG 138 (Mism.= 0) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "-" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 99 CTCATTTGcT 90 (Mism.= 1) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0191..AC:AB030708..OS:Triticum aestivum..GENE:Ahm1..PROD:AHM1..[ -200: +51]..CDS:+91..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.27 C - 0.23 TFBS AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: Z element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 29 aCACATACGT 20 (Mism.= 1) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 138 CCGTTGGTTTAT 149 (Mism.= 2) TFBS AC: RSP01297//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Inr element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 217 GaCCATCAG 225 (Mism.= 1) TFBS AC: RSP01610//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 156 TtCCGACAT 148 (Mism.= 1) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00755 Up.Conf.Int. 1 Found 1 137 GCCGTTG 143 (Mism.= 0) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 61 AAAAAGAAA 69 (Mism.= 0) TFBS AC: RSP02135//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AP1-15/TFBS: /BF: SPL1; SPL3; SPL7; SPL8 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 42 TcGTCCGTACAgTGT 56 (Mism.= 2) TFBS AC: RSP02193//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00958 Up.Conf.Int. 1 Found 1 128 CCATGAAAAG 137 (Mism.= 1) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 119 CGGCCCA 113 (Mism.= 0) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 149 aTAAACCAAC 140 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0192..AC:AF034579..OS:Arabidopsis thaliana..GENE:atao1..PROD:copper amine oxidase..[ -200: +51]..CDS:+93..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.15 T - 0.41 C - 0.16 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 162 tCACGTGGC 154 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 154 GCCACGTGat 163 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 163 atCACGTGGC 154 (Mism.= 2) TFBS AC: RSP00116//OS: bean (Phaseolus vulgaris) /GENE: CHS15; EC 2.3.1.74/TFBS: Box I /BF: SBF-1 Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 247 ATTAAtAaTTAAAAACACA 229 (Mism.= 2) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "-" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 162 tCACGTGGCa 153 (Mism.= 2) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "-" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 162 tCACGTGGCa 153 (Mism.= 2) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00039 Up.Conf.Int. 1 Found 1 161 CACGTGGC 154 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00920 Up.Conf.Int. 1 Found 1 163 atCACGTGGC 154 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 164 TatCACGTGGCA 153 (Mism.= 2) TFBS AC: RSP00314//OS: arabidopsis (Arabidopsis thaliana) /GENE: GA3/TFBS: rbe /BF: RSG, a bZIP transcriptional activator; Motifs on "-" Strand: Mean Exp. Number 0.00127 Up.Conf.Int. 1 Found 1 223 TCCgACTTGGA 213 (Mism.= 1) TFBS AC: RSP00451//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AI /BF: Unknown nuclear protein Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 247 ATTAAtAaTTAAAAACACA 229 (Mism.= 2) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 18 CCACTTG 12 (Mism.= 0) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 104 AAtATtAaGTTTGCT 118 (Mism.= 3) TFBS AC: RSP00640//OS: maize (Zea mays) /GENE: GRF1/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 162 TCACGTGG 155 (Mism.= 0) TFBS AC: RSP00641//OS: maize (Zea mays) /GENE: GRF2/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 162 TCACGTGG 155 (Mism.= 0) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 21 CACCCACTTg 12 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00649 Up.Conf.Int. 1 Found 1 154 GCCACGTGat 163 (Mism.= 2) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00039 Up.Conf.Int. 1 Found 1 161 CACGTGGC 154 (Mism.= 0) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "+" Strand: Mean Exp. Number 0.00958 Up.Conf.Int. 1 Found 1 154 GCCACGTgAt 163 (Mism.= 2) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00947 Up.Conf.Int. 1 Found 1 154 GCCACGTgaT 163 (Mism.= 2) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 153 TGCCACGTGatA 164 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 153 TGCCACGTGatA 164 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00248 Up.Conf.Int. 1 Found 1 163 aTCACGTGgC 154 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 154 GcCACGTGAT 163 (Mism.= 1) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 163 ATCACGTGgc 154 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 160 ACGTGGC 154 (Mism.= 0) TFBS AC: RSP01086//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: bZIP BS /BF: bZIP Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 178 TTTACGTTTC 187 (Mism.= 0) TFBS AC: RSP01106//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rHex /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 152 AtGCCACGTgA 162 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 155 CCACGTGa 162 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 162 tCACGTGG 155 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00258 Up.Conf.Int. 1 Found 1 161 CACGTGGC 154 (Mism.= 0) TFBS AC: RSP01593//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00011 Up.Conf.Int. 1 Found 1 163 atCACGTGGCAT 152 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 154 GCCACGTGat 163 (Mism.= 2) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "-" Strand: Mean Exp. Number 0.00096 Up.Conf.Int. 1 Found 1 164 TatCACGTGGCA 153 (Mism.= 2) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 163 aTcACGTGGC 154 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 162 tCACGTGGCa 153 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 163 ATCACGTGGC 154 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 163 AtCACGTGgC 154 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "-" Strand: Mean Exp. Number 0.00248 Up.Conf.Int. 1 Found 1 163 atCACGTGGC 154 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 155 CCACGTGa 162 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 162 tCACGTGG 155 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00475 Up.Conf.Int. 1 Found 1 162 tCACGTGG 155 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 155 cCACGTGA 162 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 18 CCACTTG 12 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 154 GCCACGTGaT 163 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.01000 Up.Conf.Int. 1 Found 1 161 CACGTGgC 154 (Mism.= 1) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 160 ACGTGGC 154 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 154 GcCACGTGAt 163 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 163 AtCACGTGGC 154 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 154 GcCACGTGAT 163 (Mism.= 1) TFBS AC: RSP02912//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 154 GcCACGtGAT 163 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 163 aTCACGTGGc 154 (Mism.= 2) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00243 Up.Conf.Int. 1 Found 1 163 aTCACGTGgC 154 (Mism.= 2) Totally 53 motifs of 50 different TFBSs have been found ____________________________________________________________ >PLPR0193..AC:AF039206 U62147..OS:Arabidopsis thaliana..GENE:CGS1..PROD:cystathionine gamma-synthase precursor..[ -200: +51]..CDS:+262..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.13 T - 0.35 C - 0.12 TFBS AC: RSP00109//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: E-site /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 103 CACCTG 98 (Mism.= 0) TFBS AC: RSP00309//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: RAV1b /BF: RAV1 Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 103 CACCTG 98 (Mism.= 0) TFBS AC: RSP01147//OS: hot pepper (Capsicum annuum) /GENE: Synthetic oligonucleotides/TFBS: CACCTG motif /BF: CARAV1 Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 103 CACCTG 98 (Mism.= 0) TFBS AC: RSP01336//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Site1, mut) /BF: BGTF Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 140 TCATGTtGAaAATT 127 (Mism.= 2) TFBS AC: RSP02287//OS: pea (Pisum sativum) /GENE: TRX f/TFBS: EE (TRX f) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00950 Up.Conf.Int. 1 Found 1 98 GAGATATT 91 (Mism.= 0) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 96 CTCAgGTGaT 105 (Mism.= 2) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0194..AC:AF042275..OS:Oryza sativa..GENE:anther-specific protein..PROD:anther-specific protein..[ -200: +51]..CDS:+51..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.17 T - 0.34 C - 0.24 TFBS AC: RSP00029//OS: wheat (Triticum aestivum) /GENE: LMW-glutenin/TFBS: P-box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00334 Up.Conf.Int. 1 Found 1 12 TGTAAAAG 19 (Mism.= 0) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "+" Strand: Mean Exp. Number 0.00954 Up.Conf.Int. 1 Found 1 27 taTAAATTATTaATTT 42 (Mism.= 3) TFBS AC: RSP00870//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: EM2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 12 TGTAAAAGTt 21 (Mism.= 1) Totally 3 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0195..AC:AF055898..OS:Zea mays..GENE:alt..PROD:alanine aminotransferase..[ -200: +51]..CDS:+69..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.16 G - 0.25 T - 0.22 C - 0.37 TFBS AC: RSP00040//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (D) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 87 AACAAAC 81 (Mism.= 0) TFBS AC: RSP00186//OS: rice (Oryza sativa), Oryza sativa /GENE: Amy3D/TFBS: G-box motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 114 CTACGTGGagA 104 (Mism.= 2) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 106 TCCACGTAGa 115 (Mism.= 1) TFBS AC: RSP00280//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: O2-box /BF: Opaque-1, b-ZIP transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 106 TCCACGTAGA 115 (Mism.= 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 193 AGAGAGGgA 201 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 193 AGAGAGgGA 201 (Mism.= 1) TFBS AC: RSP01082//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L4 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 140 AAgCaCCAACCA 151 (Mism.= 2) TFBS AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 133 CTTTTaTAAG 142 (Mism.= 1) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 114 CTACGTGG 107 (Mism.= 0) TFBS AC: RSP01822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1/TFBS: MYB1 site /BF: AtMYB30 Motifs on "-" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 87 AACAAAC 81 (Mism.= 0) TFBS AC: RSP02198//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 009F/TFBS: CArG (009F) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 133 CTtTTATAAG 142 (Mism.= 1) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 143 CACCAACC 150 (Mism.= 0) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 143 CACCAACC 150 (Mism.= 0) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 143 CACCAACC 150 (Mism.= 0) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 143 CACCAACC 150 (Mism.= 0) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 143 CACCAACC 150 (Mism.= 0) TFBS AC: RSP02766//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ATAF1 BS /BF: ATAF1 Motifs on "-" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 235 AAGTTGCGTC 226 (Mism.= 2) TFBS AC: RSP02896//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "+" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 144 ACCAAcCAT 152 (Mism.= 1) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 198 CTCTCTCAC 190 (Mism.= 0) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 144 ACCAACCA 151 (Mism.= 0) Totally 20 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0196..AC:AF057708..OS:Populus balsamifera subsp. Trichocarpa..GENE:PTD..PROD:PTD protein..[ -200: +51]..CDS:+134..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.30 C - 0.28 TFBS AC: RSP00080//OS: arabidopsis (Arabidopsis thaliana) /GENE: STE2; other genes/TFBS: AGAMOUS MADS BS /BF: MADS domain of AGAMOUS DNA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00224 Up.Conf.Int. 1 Found 1 172 TTTCCTTATTTaGAAA 187 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00224 Up.Conf.Int. 1 Found 1 187 TTTCtAAATAAGGAAA 172 (Mism.= 1) TFBS AC: RSP00085//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGL3-BE /BF: AGL3 Motifs on "+" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 172 TTTCCtTATTTAGAAA 187 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 187 TTTCTAAATAaGGAAA 172 (Mism.= 1) TFBS AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 61 CATGCAA 55 (Mism.= 0) TFBS AC: RSP00254//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: Py box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 37 CCTTTTC 31 (Mism.= 0) TFBS AC: RSP00540//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00719 Up.Conf.Int. 1 Found 1 220 TgAtGAAAAAGGG 208 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 33 TTCTCatTCCT 23 (Mism.= 2) TFBS AC: RSP00676//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: PY-Box /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 37 CCTTTTC 31 (Mism.= 0) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 6 TAACAcAGTC 15 (Mism.= 1) TFBS AC: RSP02932//OS: maize (Zea mays) /GENE: GRMZM2G097457/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 60 TGTCaTGTCA 69 (Mism.= 1) Totally 11 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0197..AC:AF077337..OS:Zea mays..GENE:HSP101..PROD:heat shock protein 101..[ -200: +51]..CDS:+147..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.16 T - 0.23 C - 0.39 TFBS AC: RSP00097//OS: maize (Zea mays) /GENE: GapC4/TFBS: 9-mer box /BF: tobacco nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 40 ACGGTCCA 47 (Mism.= 0) TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 65 AtGTCATAGA 74 (Mism.= 1) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "+" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 62 cACATGTCAT 71 (Mism.= 1) TFBS AC: RSP00872//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 14 TGTGTGACAc 5 (Mism.= 1) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 217 AGAAACAC 224 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 217 AGAAACAC 224 (Mism.= 1) TFBS AC: RSP01046//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: NON /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 33 CAATCCAAC 41 (Mism.= 0) TFBS AC: RSP02093//OS: Petunia hybrida /GENE: SSU11/TFBS: GT-motif (LRE) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00030 Up.Conf.Int. 1 Found 1 66 ATGTGGgCcTTAAT 53 (Mism.= 2) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0198..AC:AF106087..OS:Arabidopsis thaliana..GENE:CoA ligase 3 ..PROD:4-coumarate:CoA ligase 3..[ -200: +51]..CDS:+39..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.04 T - 0.37 C - 0.24 TFBS AC: RSP00049//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00895 Up.Conf.Int. 1 Found 1 108 CGCACaTtTC 117 (Mism.= 2) TFBS AC: RSP00281//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif VII /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 161 CTCTC 157 (Mism.= 0) TFBS AC: RSP00384//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: GAGAG motif /BF: root-specific nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 157 GAGAG 161 (Mism.= 0) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 51 TTTGTCGTATT 61 (Mism.= 0) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0199..AC:AF168391..OS:Arabidopsis thaliana..GENE:RCP1..PROD:root cap 1..[ -200: +51]..CDS:+19..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.28 C - 0.29 TFBS AC: RSP00421//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 251 ACCGAGA 245 (Mism.= 0) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 98 TCCACGTGca 107 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00919 Up.Conf.Int. 1 Found 1 98 TcCACGTGCA 107 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 107 TgCACGTGgA 98 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00919 Up.Conf.Int. 1 Found 1 98 TcCACGTGCA 107 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 107 TgCACGTGgA 98 (Mism.= 2) TFBS AC: RSP01003//OS: snapdragon (Antirrhinum majus) /GENE: DEFH125/TFBS: CArG1 /BF: DEF/GLO Motifs on "+" Strand: Mean Exp. Number 0.00738 Up.Conf.Int. 1 Found 1 75 ACAATTAAcG 84 (Mism.= 1) TFBS AC: RSP01134//OS: Fusarium solani f. sp, pisi (Nectria haematococca) /GENE: Cutinase/TFBS: CTF2 BS /BF: CTF2 Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 179 GTTCCAaACC 188 (Mism.= 1) TFBS AC: RSP01449//OS: rice (Oryza sativa) /GENE: OsNAS1/TFBS: OsNAS1-OsIRO2-BS /BF: OsIRO2 Motifs on "-" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 107 TGCACGTGGacGG 95 (Mism.= 2) TFBS AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/TFBS: 39-bp element /BF: SIP1 Motifs on "+" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 75 ACAATTAAcGA 85 (Mism.= 1) TFBS AC: RSP01814//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC2/TFBS: HD-ZIP BS /BF: HD-ZIP Motifs on "-" Strand: Mean Exp. Number 0.00224 Up.Conf.Int. 1 Found 1 208 GAgAATTATTgTAG 195 (Mism.= 2) TFBS AC: RSP01866//OS: pepper (Capsicum annuum) /GENE: Bs3-E/TFBS: UPAAvrBs3Drep16 box /BF: UPAAvrBs3Drep16 Motifs on "+" Strand: Mean Exp. Number 0.00806 Up.Conf.Int. 1 Found 1 196 TACAATAATTCTCTC 210 (Mism.= 3) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 106 gCACGTGGaC 97 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 98 TCCACGTGca 107 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 107 TgCACGTGGa 98 (Mism.= 2) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 117 CGGCCCA 123 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00237 Up.Conf.Int. 1 Found 1 106 GCACGTGG 99 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 169 GAAGAAGAA 161 (Mism.= 0) TFBS AC: RSP02416//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 88-91 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 112 AGAGATGC 105 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 107 tgCACGTGGA 98 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 107 tgCACGTGGA 98 (Mism.= 2) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 107 TGCACGTgGa 98 (Mism.= 2) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "-" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 106 GCACGTGGAc 97 (Mism.= 1) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "-" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 106 GCACGTGGAc 97 (Mism.= 1) TFBS AC: RSP02914//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS1 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 228 TAGCTtCCAT 219 (Mism.= 1) Totally 25 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0200..AC:AF180896..OS:Arabidopsis thaliana..GENE:ADK1..PROD:adenosine kinase 1..[ -200: +51]..CDS:+50..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.31 C - 0.20 TFBS AC: RSP00206//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 20 tTGAGcTAATAT 31 (Mism.= 2) TFBS AC: RSP00887//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00414 Up.Conf.Int. 1 Found 1 110 AAGAATCTA 118 (Mism.= 0) TFBS AC: RSP01182//OS: pea (Pisum sativum) /GENE: GS3A/TFBS: GS3A-F1 BS /BF: GS3A-F1 Motifs on "+" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 20 TTGAgCTAaTAtATAAA 36 (Mism.= 3) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 130 CCTACTTTGG 139 (Mism.= 2) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 116 CTATcTTTGG 125 (Mism.= 1) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 11 TGCATGATT 19 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 2 103 GAAGAAGAA 111 (Mism.= 0) 106 GAAGAAGAA 114 (Mism.= 0) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00991 Up.Conf.Int. 1 Found 1 17 TCATGCAt 10 (Mism.= 1) TFBS AC: RSP02512//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR2/TFBS: AtSGR2-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 17 TCATGCAt 10 (Mism.= 1) Totally 10 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0201..AC:AF192307..OS:Arabidopsis thaliana..GENE:acyl-CoA binding protein 2..PROD:acyl-CoA binding protein 2..[ -200: +51]..CDS:+241..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.35 C - 0.19 TFBS AC: RSP00254//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: Py box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 247 CCTTTTC 241 (Mism.= 0) TFBS AC: RSP00558//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 208 TCCaATTCATTAa 220 (Mism.= 2) TFBS AC: RSP00676//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: PY-Box /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 247 CCTTTTC 241 (Mism.= 0) TFBS AC: RSP00750//OS: Catharanthus roseus /GENE: STR/TFBS: BN rev /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 60 TTATTGTgAAAT 71 (Mism.= 1) TFBS AC: RSP00969//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: Aux28B2 /BF: STGA1 Motifs on "-" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 166 gTGACGACAg 157 (Mism.= 2) TFBS AC: RSP01154//OS: maize (Zea mays) /GENE: Em/TFBS: Em1d /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 52 tTTACGTGTT 61 (Mism.= 1) TFBS AC: RSP01261//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS8 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 53 TTACGTGT 60 (Mism.= 0) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00767 Up.Conf.Int. 1 Found 1 118 TgtACCCTAA 109 (Mism.= 2) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00691 Up.Conf.Int. 1 Found 1 118 TGtACCCTAA 109 (Mism.= 1) TFBS AC: RSP01305//OS: tobacco (Nicotiana tabacum) /GENE: Thio h2/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 118 TgtACCCTAA 109 (Mism.= 2) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 62 TaACACGTAaAA 51 (Mism.= 2) TFBS AC: RSP01725//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 62 taACACGTAAAA 51 (Mism.= 2) TFBS AC: RSP01879//OS: tomato (Lycopersicon esculentum) /GENE: LeACO1/TFBS: LeHB-1 BS 1 /BF: LeHB-1 Motifs on "-" Strand: Mean Exp. Number 0.00391 Up.Conf.Int. 1 Found 1 78 AATAAATATT 69 (Mism.= 0) TFBS AC: RSP02076//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS2 /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00620 Up.Conf.Int. 1 Found 1 171 CGCCAAGt 178 (Mism.= 1) TFBS AC: RSP02508//OS: rice (Oryza sativa, japonica) /GENE: D14/TFBS: CArG 1 /BF: [OsMADS57 + OsTB1] Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 215 CATTAAAAAG 224 (Mism.= 1) TFBS AC: RSP02509//OS: rice (Oryza sativa, japonica) /GENE: D14/TFBS: CArG 2 /BF: [OsMADS57 + OsTB1] Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 215 CATTAAAAAG 224 (Mism.= 0) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0202..AC:AF257186..OS:Arabidopsis thaliana..GENE:DEX1..PROD:defective in exine formation..[ -200: +51]..CDS:+253..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.32 C - 0.20 TFBS AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 76/65 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 91 GAAaGGTTaAAA 102 (Mism.= 2) TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 107 AAgATTTTTAaC 96 (Mism.= 2) TFBS AC: RSP00572//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: 3'/AT-rich J1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 30 ATATGTCA 37 (Mism.= 0) TFBS AC: RSP00613//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: UN Z1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 81 ATCAAGAA 88 (Mism.= 0) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 91 gAAAGGTTAAAA 102 (Mism.= 1) TFBS AC: RSP01086//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: bZIP BS /BF: bZIP Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 138 TTgACGTTTC 147 (Mism.= 1) TFBS AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic oligonucleotides/TFBS: ZPT2-2 BS 1 /BF: ZPT2-2 Motifs on "+" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 208 CAGT 211 --11-- 223 AGCG 226 (Mism.= 0/ 0) TFBS AC: RSP01692//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE J /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 110 TTCGATCA 117 (Mism.= 0) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 34 gTCAATCATTT 44 (Mism.= 1) TFBS AC: RSP02218//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE1 (FHL) /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 146 AAACGTCA 139 (Mism.= 0) TFBS AC: RSP02446//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS1 /BF: HB05; HB12 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 36 CAATCATTT 44 (Mism.= 0) TFBS AC: RSP02514//OS: tomato (Solanum lycopersicum) /GENE: SlHsp26.1-P/TFBS: HSE (SlHsp26.1-P) /BF: SlHsfA3 Motifs on "+" Strand: Mean Exp. Number 0.00386 Up.Conf.Int. 1 Found 1 111 tCGATCaTTCGA 122 (Mism.= 2) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 146 AAAcGTCAATTa 135 (Mism.= 2) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0203..AC:AF258609..OS:Aegilops tauschii..GENE:starch synthase III..PROD:starch synthase III..[ -200: +51]..CDS:+28..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.18 G - 0.39 T - 0.23 C - 0.20 TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 239 TCTCCgGCC 247 (Mism.= 1) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 225 gAAATGGAGA 234 (Mism.= 1) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 15 AGcTTCGATCCtTTa 1 (Mism.= 3) TFBS AC: RSP01710//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Intermediate” /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00334 Up.Conf.Int. 1 Found 1 89 CCAATTTTAG 98 (Mism.= 0) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 98 CtAAAATTGG 89 (Mism.= 1) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "+" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 101 CTTTCCCC 108 (Mism.= 0) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 29 TTTTGTCC 22 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 29 TTTTGTCC 22 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0204..AC:AF319968..OS:Arabidopsis thaliana..GENE:EMF1..PROD:embryonic flower 1..[ -200: +51]..CDS+1040..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.11 T - 0.33 C - 0.32 TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00964 Up.Conf.Int. 1 Found 1 76 TTAGGGTTT 84 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 84 AAACCCTAA 76 (Mism.= 0) TFBS AC: RSP00378//OS: parsley (Petroselinum crispum) /GENE: WRKY1/TFBS: WB /BF: WRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00941 Up.Conf.Int. 1 Found 1 104 TTTGACT 98 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 76 TTAGGGTTT 84 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 20 AGAGAGAGA 12 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 62 GGAGAGAGA 54 (Mism.= 0) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 183 AGTTTttATCCCTTg 197 (Mism.= 3) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 85 gAAACCCTAA 76 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 85 gaAACCCTAA 76 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 84 AAACCCTA 77 (Mism.= 0) TFBS AC: RSP01968//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 29 TAGGAaAAA 37 (Mism.= 1) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 77 TAGGGTTT 84 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 66 GGAGGGAGAG 57 (Mism.= 1) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00653 Up.Conf.Int. 1 Found 1 107 GAATtTGACTGc 96 (Mism.= 2) TFBS AC: RSP02685//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CPC/TFBS: W-box /BF: WRKY75 Motifs on "+" Strand: Mean Exp. Number 0.00941 Up.Conf.Int. 1 Found 1 98 AGTCAAA 104 (Mism.= 0) TFBS AC: RSP02824//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PORC/TFBS: SCL27 BS1 /BF: SCL27 Motifs on "+" Strand: Mean Exp. Number 0.01000 Up.Conf.Int. 1 Found 1 31 GGAAAA 36 (Mism.= 0) TFBS AC: RSP02849//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VITL1/TFBS: VP1 /BF: WRKY46 Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 39 TTTTTttCCTAT 28 (Mism.= 2) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 84 AAACCCTAA 76 (Mism.= 0) Totally 18 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0205..AC:AF339747..OS:Lophopyrum elongatum..GENE:ESI47..PROD:protein kinase..[ -200: +51]..CDS:+515..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.27 T - 0.18 C - 0.30 TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 241 CAAAACCAA 233 (Mism.= 0) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 22 AGAAAGAGA 30 (Mism.= 0) TFBS AC: RSP01454//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-II /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 237 ACCAACC 231 (Mism.= 0) TFBS AC: RSP01846//OS: watermelon (Citrullus vulgaris) /GENE: AGPL1/TFBS: TCCAAAA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 243 TCCAAAA 237 (Mism.= 0) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 237 ACCAACC 231 (Mism.= 0) TFBS AC: RSP02589//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 237 ACCAACC 231 (Mism.= 0) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 241 CaAAACCAAC 232 (Mism.= 1) TFBS AC: RSP02904//OS: rice (Oryza sativa) /GENE: Os01t0182700/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 237 ACCAACC 231 (Mism.= 0) TFBS AC: RSP02906//OS: rice (Oryza sativa) /GENE: Os05t0499400/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 237 ACCAACC 231 (Mism.= 0) TFBS AC: RSP02907//OS: rice (Oryza sativa) /GENE: Os10t0474900/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 231 GGTTGGT 237 (Mism.= 0) TFBS AC: RSP02908//OS: rice (Oryza sativa) /GENE: Os11to4358/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 237 ACCAACC 231 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0206..AC:AF339908..OS:Arabidopsis thaliana..GENE:SDE3..PROD:RNA helicase SDE3..[ -200: +51]..CDS:+340..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.35 C - 0.24 TFBS AC: RSP00035//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: D1 /BF: DOF Motifs on "+" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 100 CAAAAGG 106 (Mism.= 0) TFBS AC: RSP00128//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 206 TGAAAAgAGTGAGTgA 191 (Mism.= 2) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 17 AGGTCAATTC 26 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00679 Up.Conf.Int. 1 Found 1 16 aaGGTCAATTC 26 (Mism.= 2) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00407 Up.Conf.Int. 1 Found 1 120 TgCACGTGCT 129 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 120 tGCACGTGcT 129 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 120 TgCACGTGCt 129 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 129 agCACGTGCA 120 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 120 TgCACGTGCt 129 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 129 agCACGTGCA 120 (Mism.= 2) TFBS AC: RSP01202//OS: Chlorella vulgaris /GENE: NR/TFBS: NIT2 BS III /BF: NIT2 Motifs on "+" Strand: Mean Exp. Number 0.00183 Up.Conf.Int. 1 Found 1 13 CCAAAGGT 20 (Mism.= 0) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "-" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 19 CCtTTGGAG 11 (Mism.= 1) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00679 Up.Conf.Int. 1 Found 1 26 GAATTGACCTT 16 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00679 Up.Conf.Int. 1 Found 1 26 GAATTGACCTT 16 (Mism.= 2) TFBS AC: RSP01744//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCMPG1 (At3g02840)/TFBS: WRKY11 BS /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 25 AATTGACCtTTG 14 (Mism.= 1) TFBS AC: RSP01747//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtWRKY11 (At4g31550)/TFBS: WRKY11 BS1 /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 26 GaATTGACCTTTg 14 (Mism.= 2) TFBS AC: RSP02001//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 4 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 1 26 GAatTGACCTTT 15 (Mism.= 2) TFBS AC: RSP02220//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE3 (FHL) /BF: Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 121 GCACGTGC 128 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 128 GCACGTGC 121 (Mism.= 0) TFBS AC: RSP02290//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: AE-box /BF: 52-kDa (b3-domain) TF Motifs on "-" Strand: Mean Exp. Number 0.00430 Up.Conf.Int. 1 Found 1 214 AAGAAACAT 206 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00666 Up.Conf.Int. 1 Found 1 121 GCACGTGC 128 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00947 Up.Conf.Int. 1 Found 1 121 GCACGTGC 128 (Mism.= 1) TFBS AC: RSP02830//OS: poplar (Poplus trichocarpa) /GENE: PtANR1/TFBS: MdMYB9 BS (PtANR1) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 120 TgCACGTGCT 129 (Mism.= 1) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 15 AAAGGTCAATTc 26 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 120 tGCACGTGcT 129 (Mism.= 2) Totally 25 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0207..AC:AF368237..OS:Nicotiana tabacum..GENE:zgt..PROD:circadian clock coupling factor ZGT..[ -200: +51]..CDS:+74..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.30 C - 0.24 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00519 Up.Conf.Int. 1 Found 1 51 GGACaCGTGtC 61 (Mism.= 2) TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 60 ACaCGTGTCCTt 49 (Mism.= 2) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 55 ACGTGTCGC 63 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00519 Up.Conf.Int. 1 Found 1 155 ACGTGGAGC 147 (Mism.= 1) TFBS AC: RSP00066//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1b /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 55 ACGTGTCGC 63 (Mism.= 1) TFBS AC: RSP00143//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: CE3 /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 52 GACaCGTGTC 61 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 61 GACaCGTGTC 52 (Mism.= 1) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 149 TCCACGTAGC 158 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 52 GACACGTGtC 61 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 61 GACACGTGtC 52 (Mism.= 1) TFBS AC: RSP00280//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: O2-box /BF: Opaque-1, b-ZIP transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 149 TCCACGTAGc 158 (Mism.= 1) TFBS AC: RSP00479//OS: tobacco (Nicotiana tabacum) /GENE: ZGT/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 50 AGGACACGTGTCGC 63 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00989 Up.Conf.Int. 1 Found 1 53 ACACGTG 59 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 1 60 ACACGTG 54 (Mism.= 0) TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 38 GaTGGTTAATAAa 50 (Mism.= 2) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 158 GCtACGTGGA 149 (Mism.= 1) TFBS AC: RSP00877//OS: arabidopsis (Arabidopsis thaliana) /GENE: MCM3/TFBS: Site 2 E2F (D2) /BF: AtE2F Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 180 CCCcCCAAA 172 (Mism.= 1) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 34 AAAAGaTgGTTA 45 (Mism.= 2) TFBS AC: RSP00932//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-1 /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 32 AAAaAAgATgGTTAAT 47 (Mism.= 3) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 159 TGCtACGTGGAg 148 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 52 GaCACGTGtC 61 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 61 GaCACGTGtC 52 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 52 gaCACGTGTC 61 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 61 gaCACGTGTC 52 (Mism.= 2) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 1 55 ACGTGTC 61 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00989 Up.Conf.Int. 1 Found 1 58 ACGTGTC 52 (Mism.= 0) TFBS AC: RSP01122//OS: tomato (Lycopersicon esculentum) /GENE: Synthetic oligonucleotides/TFBS: RBSS5 /BF: ABZ1 Motifs on "+" Strand: Mean Exp. Number 0.00013 Up.Conf.Int. 1 Found 1 50 aGgACACGTGTCGC 63 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 52 GACACGTGTC 61 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00175 Up.Conf.Int. 1 Found 1 61 GACACGTGtC 52 (Mism.= 1) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 159 AAcATTTTTTCTa 171 (Mism.= 2) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00755 Up.Conf.Int. 1 Found 1 38 CTTTTTTGGG 29 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 215 aTCTATATAT 224 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 53 ACACGTGT 60 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 60 ACACGTGT 53 (Mism.= 0) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 157 CTACGTGG 150 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 149 TCCACGTAgC 158 (Mism.= 1) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 8 ATACGTGT 1 (Mism.= 0) TFBS AC: RSP01673//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AT4G17550/TFBS: MYC2 BS (AT4G17550) /BF: MYC2 Motifs on "-" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 65 AgGCGACACGTGTCCTtT 48 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 52 GaCACGTGTC 61 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 61 GaCACGTGTC 52 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 52 GACACGTGTC 61 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 61 GACACGTGTC 52 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 60 aCACGTGtCC 51 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 52 gaCACGTGTC 61 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 61 gaCACGTGTC 52 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 52 GACACGTG 59 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 61 GACACGTG 54 (Mism.= 0) TFBS AC: RSP02030//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ERSE-I /BF: [bZIP28 + NF-YB3] Motifs on "+" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 136 CCAAT 140 --10-- 151 CACG 154 (Mism.= 0/ 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 61 gACACGTGtC 52 (Mism.= 2) TFBS AC: RSP02056//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLOWERING LOCUS T (FT)/TFBS: CORE2 /BF: CONSTANS (CO) Motifs on "-" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 124 aATTGTGGaTATGATaT 108 (Mism.= 3) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 52 GACACGTGTC 61 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 61 GACACGTGTC 52 (Mism.= 0) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 23 AAAATATCT 15 (Mism.= 0) TFBS AC: RSP02287//OS: pea (Pisum sativum) /GENE: TRX f/TFBS: EE (TRX f) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 14 GAGATATT 21 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "-" Strand: Mean Exp. Number 0.00121 Up.Conf.Int. 1 Found 1 62 CgACACGTGTCc 51 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 53 ACACGTGT 60 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 60 ACACGTGT 53 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 52 GaCACGTGTc 61 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 61 GaCACGTGTc 52 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 52 GACACGTGtc 61 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 61 GACACGTGTC 52 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00233 Up.Conf.Int. 1 Found 1 52 gACACGTGTC 61 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00142 Up.Conf.Int. 1 Found 1 61 gACACGTGTC 52 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 52 GACACGTGtc 61 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 61 GACACGTGTC 52 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 52 GACACGTGTc 61 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 61 GACACGTGTc 52 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 54 CACGTGTC 61 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 59 CACGTGTC 52 (Mism.= 0) TFBS AC: RSP02631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR2/TFBS: EE /BF: RVE8 Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 24 GAAAATATCTcAA 12 (Mism.= 1) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "-" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 23 AAAATATCT 15 (Mism.= 0) TFBS AC: RSP02656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "-" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 23 AAAATATCT 15 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 1 55 ACGTGTC 61 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00989 Up.Conf.Int. 1 Found 1 58 ACGTGTC 52 (Mism.= 0) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 23 AAAATATCT 15 (Mism.= 0) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 15 AGATATTTT 23 (Mism.= 0) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 15 AGATATTTT 23 (Mism.= 0) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 71 CTCACtTGCT 80 (Mism.= 1) TFBS AC: RSP02873//OS: Artemisia annua /GENE: DBR2/TFBS: WRKY BS2 /BF: WRKY Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 94 TTTGACCC 101 (Mism.= 0) TFBS AC: RSP02874//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS1 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 103 TAgGGTCAAAGt 92 (Mism.= 2) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 52 GACACGTGtC 61 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 61 GACACGTGTC 52 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 52 gACACGTGtC 61 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 61 gACACGTGtC 52 (Mism.= 2) Totally 84 motifs of 60 different TFBSs have been found ____________________________________________________________ >PLPR0208..AC:AF395819..OS:Oryza sativa..GENE:Reb..PROD:transcription activator REB..[ -200: +51]..CDS:+157..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.24 C - 0.29 TFBS AC: RSP00212//OS: arabidopsis (Arabidopsis thaliana) /GENE: ATHB-2/TFBS: ATHB-2 BE /BF: ATHB-2 protein Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 56 TAATAATTA 48 (Mism.= 0) TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00146 Up.Conf.Int. 1 Found 1 42 GTTaGTTAATtAT 54 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 220 TcCTCTCTCCT 230 (Mism.= 1) TFBS AC: RSP00808//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: Myb1 /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 42 GTTAGTT 48 (Mism.= 0) TFBS AC: RSP00810//OS: arabidopsis (Arabidopsis thaliana) /GENE: Ribosomal protein S13-like/TFBS: Myb1 /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 42 GTTAGTT 48 (Mism.= 0) TFBS AC: RSP00812//OS: arabidopsis (Arabidopsis thaliana) /GENE: Putative phosphate transporter/TFBS: Myb1 /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 42 GTTAGTT 48 (Mism.= 0) TFBS AC: RSP00813//OS: arabidopsis (Arabidopsis thaliana) /GENE: SIMIP/TFBS: Myb1 /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 42 GTTAGTT 48 (Mism.= 0) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "+" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 66 GAAGGtaaAGAAGAT 80 (Mism.= 3) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 201 AGCCGCCTT 209 (Mism.= 1) TFBS AC: RSP01345//OS: cucumber, Cucumis sativus /GENE: ms/TFBS: IMH2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 104 AACCCCAACCT 114 (Mism.= 2) TFBS AC: RSP01347//OS: cucumber, Cucumis sativus /GENE: ICL/TFBS: IMH2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 104 AACCCCAACCT 114 (Mism.= 0) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 224 CTCTCCTCTCCtctT 238 (Mism.= 3) TFBS AC: RSP02222//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC-lke box /BF: ORA59 Motifs on "+" Strand: Mean Exp. Number 0.00964 Up.Conf.Int. 1 Found 1 199 GCAGCCGCc 207 (Mism.= 1) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 85 TACCAAtC 78 (Mism.= 1) TFBS AC: RSP02841//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HY5/TFBS: ACG-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 45 TAACGGC 39 (Mism.= 0) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "+" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 136 TTTGTCGTAac 146 (Mism.= 2) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0209..AC:AJ010728..OS:Avena fatua..GENE:alpha-Amy2A..PROD:alpha amylase..[ -200: +51]..CDS+1234..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.22 C - 0.33 TFBS AC: RSP00034//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 62 TAACAGA 68 --22-- 91 CCAAGCAACg 100 (Mism.= 0/ 1) TFBS AC: RSP00485//OS: barley (Hordeum vulgare) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 62 TAACAGA 68 --22-- 91 CCAAGCAACg 100 (Mism.= 0/ 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 160 TATAAATACCAG 171 (Mism.= 0) TFBS AC: RSP00511//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: "TATCCAT" /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 106 TATCCATGGTACATACGGC 124 (Mism.= 0) TFBS AC: RSP00512//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: Inr /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 184 CTTGTAACCATCAGCCAATCGACCAGCCAATCATTC 219 (Mism.= 0) TFBS AC: RSP00513//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: GARE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 55 ATGATAATAACAGAGTCC 72 (Mism.= 0) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00251 Up.Conf.Int. 1 Found 1 16 TGACTTGACCGTCAT 30 (Mism.= 0) TFBS AC: RSP00658//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 62 TAACAGA 68 --22-- 91 CCAAGCAACg 100 (Mism.= 0/ 1) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00448 Up.Conf.Int. 1 Found 1 17 GACTTGACCgTCATC 31 (Mism.= 1) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00698 Up.Conf.Int. 1 Found 1 62 TAACAGAGTC 71 (Mism.= 0) TFBS AC: RSP00844//OS: oat (Avena fatua) /GENE: Amy2/A/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 62 TAACAGA 68 --22-- 91 CCAAGCAACg 100 (Mism.= 0/ 1) TFBS AC: RSP00848//OS: wheat (Triticum aestivum) /GENE: Amy2/8/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 62 TAACAGA 68 --22-- 91 CCAAGCAACg 100 (Mism.= 0/ 1) TFBS AC: RSP00851//OS: wheat (Triticum aestivum) /GENE: Amy2/34/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 62 TAACAGA 68 --22-- 91 CCAAGCAACg 100 (Mism.= 0/ 1) TFBS AC: RSP01224//OS: rice (Oryza sativa) /GENE: Amy7 (Amy1A)/TFBS: GARE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 61 ATAACAgAgTCCGG 74 (Mism.= 2) TFBS AC: RSP01293//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 12 tGATTGACTTGACCGTCAT 30 (Mism.= 1) TFBS AC: RSP01295//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 12 tGATTGACTTGACCGTCAT 30 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00108 Up.Conf.Int. 1 Found 1 159 CTATAAATA 167 (Mism.= 0) TFBS AC: RSP01298//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 2 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 12 tGATTGACTTGACCGTCAT 30 (Mism.= 1) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 159 CTATAAATAC 168 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 159 CTATAAATAC 168 (Mism.= 0) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00092 Up.Conf.Int. 1 Found 1 246 CgCTCtTCTtCGTCT 232 (Mism.= 3) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 12 TGATTGACTTgA 23 (Mism.= 1) TFBS AC: RSP02246//OS: Arabidopsis (Arabidopsis thaliana) /GENE: RPP8/TFBS: W-RPP8-A/B/C /BF: WRKY transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 1 14 ATTGACTT 21 (Mism.= 0) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00066 Up.Conf.Int. 1 Found 1 16 TGACTTGAC 24 (Mism.= 0) TFBS AC: RSP02438//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IKU2/TFBS: Wi-box /BF: MINI3 Motifs on "+" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 15 TTGACTT 21 (Mism.= 0) TFBS AC: RSP02530//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 3 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00440 Up.Conf.Int. 1 Found 1 177 TAGTACAC 184 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 160 TATAAATA 167 (Mism.= 0) TFBS AC: RSP02916//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS3 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00289 Up.Conf.Int. 1 Found 1 120 TATgTACCAT 111 (Mism.= 1) TFBS AC: RSP02950//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/1 /BF: E2F1 Motifs on "-" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 134 AGCGCGCGAc 125 (Mism.= 1) Totally 29 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0210..AC:X68831..OS:Antirrhinum majus..GENE:globosa..PROD:globosa..[ -200: +51]..CDS:+44..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.12 T - 0.30 C - 0.18 TFBS AC: RSP00040//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (D) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 128 AACAAAC 122 (Mism.= 0) TFBS AC: RSP00727//OS: tobacco (Nicotiana tabacum) /GENE: Ubi.U4/TFBS: U-box /BF: unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 58 GCTTGAC 64 (Mism.= 0) TFBS AC: RSP00850//OS: maize (Zea mays) /GENE: H4C7/TFBS: CAT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 59 GCCAAC 54 (Mism.= 0) TFBS AC: RSP01822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1/TFBS: MYB1 site /BF: AtMYB30 Motifs on "-" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 128 AACAAAC 122 (Mism.= 0) TFBS AC: RSP02088//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00648 Up.Conf.Int. 1 Found 1 185 ATCATTTTtAC 195 (Mism.= 1) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 84 TTCCATttTCGAA 96 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 224 TCTCTTGTTTT 214 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0211..AC:AJ224122..OS:Arabidopsis thaliana..GENE:DAG1..PROD:DNA-binding protein..[ -200: +51]..CDS:+115..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.32 C - 0.23 TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 78 GAAAAAGCAAAAGgAg 63 (Mism.= 2) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 67 TTTTGCTTTTTCaTat 82 (Mism.= 3) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 151 GCCAAGaGGA 142 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 13 AGAGAGGgA 21 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 13 AGAGAGgGA 21 (Mism.= 1) TFBS AC: RSP00868//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: TA-rich motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00872 Up.Conf.Int. 1 Found 1 87 TATTATATTtTA 98 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 218 CTTTTTTTGG 209 (Mism.= 0) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 180 TTTCACTT 173 (Mism.= 0) TFBS AC: RSP01745//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At4CL4 (At3g21230)/TFBS: WRKY11 BS1 /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 53 tTTTTGACTAgTG 41 (Mism.= 2) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 218 CTTTTTTTGG 209 (Mism.= 0) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00690 Up.Conf.Int. 1 Found 1 154 GCAGCC 149 (Mism.= 0) TFBS AC: RSP02304//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS1 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00784 Up.Conf.Int. 1 Found 1 53 TTTtTGACTAgT 42 (Mism.= 2) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 7 143 GAAGAAGAA 135 (Mism.= 0) 140 GAAGAAGAA 132 (Mism.= 0) 137 GAAGAAGAA 129 (Mism.= 0) 134 GAAGAAGAA 126 (Mism.= 0) 131 GAAGAAGAA 123 (Mism.= 0) 128 GAAGAAGAA 120 (Mism.= 0) 125 GAAGAAGAA 117 (Mism.= 0) Totally 19 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0212..AC:Z15058..OS:Arabidopsis thaliana..GENE:bcb..PROD:blue copper-binding protein..[ -200: +51]..CDS:+68..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.28 C - 0.20 TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00636 Up.Conf.Int. 1 Found 1 19 CTTGTgGTCA 10 (Mism.= 1) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 15 TGGTCAATTt 6 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 16 gTGGTCAATTt 6 (Mism.= 2) TFBS AC: RSP00669//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: PG/TFBS: B-box /BF: fruit nuclear protein extracts Motifs on "+" Strand: Mean Exp. Number 0.00999 Up.Conf.Int. 1 Found 1 20 TGATAATATctAAA 33 (Mism.= 2) TFBS AC: RSP01261//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS8 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 63 TTACGTGT 56 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00592 Up.Conf.Int. 1 Found 1 117 CTATAAATA 125 (Mism.= 0) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 6 aAATTGACCAc 16 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 6 aAATTGACCAc 16 (Mism.= 2) TFBS AC: RSP01639//OS: tobacco (Nicotiana tabacum) /GENE: PR-Q; ACS2/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00780 Up.Conf.Int. 1 Found 1 110 AATTGTCCTA 119 (Mism.= 1) TFBS AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/TFBS: 39-bp element /BF: SIP1 Motifs on "-" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 115 ACAATTAAAGA 105 (Mism.= 0) TFBS AC: RSP02631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR2/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 21 GAtAATATCTAAA 33 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0213..AC:X95962..OS:Arabidopsis thaliana..GENE:CER3..PROD: CER3, epicuticular wax biosynthesis related protein..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.35 C - 0.18 TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00297 Up.Conf.Int. 1 Found 1 3 CAAGTGaTtCTG 14 (Mism.= 2) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 98 AGAAAGAAA 90 (Mism.= 0) TFBS AC: RSP00897//OS: Bean yellow dwarf virus (Mastrevirus) /GENE: Intergenic Region/TFBS: PAL04 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 200 AATGAtGTCATTT 212 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 211 AATGACaTCATTa 199 (Mism.= 2) TFBS AC: RSP01175//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 2 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 37 AGCTGtCCGTg 47 (Mism.= 2) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 179 TTTCCtcGGAGT 168 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 179 TTTCCtcGGAGT 168 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 179 TTTCCtcGGAGT 168 (Mism.= 2) TFBS AC: RSP02114//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: HSE3 /BF: unknown HSF(s) Motifs on "-" Strand: Mean Exp. Number 0.00072 Up.Conf.Int. 1 Found 1 108 AGAAAAATCAAGAAA 94 (Mism.= 3) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 22 TTCCATCAcaGAA 10 (Mism.= 2) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 119 TACCAACC 112 (Mism.= 0) Totally 11 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0214..AC:X98255..OS:Arabidopsis thaliana..GENE:GASA4..PROD:GASA4..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.32 C - 0.20 TFBS AC: RSP00058//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: CE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 18 TGCCACaGG 26 (Mism.= 1) TFBS AC: RSP00841//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: 12 nt palindrome /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 13 TGTGttGCCACA 24 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 24 TGTGGCaaCACA 13 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 18 TGCCACagGGAA 29 (Mism.= 2) TFBS AC: RSP01711//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Others” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 143 CTAGTTTTAG 134 (Mism.= 0) Totally 5 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0215..AC:X84315..OS:Arabidopsis thaliana..GENE:GPRP..PROD:GPRP..[ -200: +51]..CDS:+820..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.38 C - 0.15 TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 112 tATATTTTTATT 101 (Mism.= 1) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 112 tATATTTTTATT 101 (Mism.= 1) TFBS AC: RSP00196//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 228 tTTTTtTtTACCTTA 214 (Mism.= 3) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 236 AAGATGAGtTTTttT 222 (Mism.= 3) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 138 AGAAACAT 145 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00908 Up.Conf.Int. 1 Found 1 3 TtACATGTGT 12 (Mism.= 1) TFBS AC: RSP01733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM2 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00741 Up.Conf.Int. 1 Found 1 131 CCGCGT 136 (Mism.= 0) TFBS AC: RSP02005//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 2 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00554 Up.Conf.Int. 1 Found 1 48 aTTATGACAACg 59 (Mism.= 2) TFBS AC: RSP02290//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: AE-box /BF: 52-kDa (b3-domain) TF Motifs on "+" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 137 AAGAAACAT 145 (Mism.= 0) TFBS AC: RSP02870//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtJIN1/TFBS: AtCAMTA3 BS /BF: AtCAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00741 Up.Conf.Int. 1 Found 1 131 CCGCGT 136 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0216..AC:X55970..OS:Arabidopsis thaliana..GENE:photosystem II 10 kDa polypeptide..PROD:photosystem II 10 kDa polypeptide..[ -200: +51]..CDS:+51..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.25 C - 0.20 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 133 ACACGTGGC 125 (Mism.= 0) TFBS AC: RSP00043//OS: rice (Oryza sativa) (Oryza sativa) /GENE: rab16A-D/TFBS: Motif I core /BF: TAF-1,transacting factor Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 18 TACGTGGC 25 (Mism.= 0) TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "-" Strand: Mean Exp. Number 0.00852 Up.Conf.Int. 1 Found 1 135 tGACaCGTGGC 125 (Mism.= 2) TFBS AC: RSP00048//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: ABRE A2; ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 16 CCTACGTGGCat 27 (Mism.= 2) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 125 GCCACgTGTC 134 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 125 GCCACGTGtC 134 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 134 GaCACGTGGC 125 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 132 CACGTGGC 125 (Mism.= 0) TFBS AC: RSP00186//OS: rice (Oryza sativa), Oryza sativa /GENE: Amy3D/TFBS: G-box motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 17 CTACGTGGCat 27 (Mism.= 2) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 134 GACACGTGGC 125 (Mism.= 0) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 135 TGACACGTGGCt 124 (Mism.= 1) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 25 GCCACGTAgG 16 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 125 gCCACGTGTC 134 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 133 ACACGTG 127 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 132 CACGTGGC 125 (Mism.= 0) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 25 GCCACGTAgG 16 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 124 aGCCACGTGTCA 135 (Mism.= 1) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 26 TGCCACGTaGgA 15 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 125 GcCACGTGtC 134 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 134 GaCACGTGgC 125 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 125 gCCACGTGTC 134 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 19 ACGTGGC 25 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00672 Up.Conf.Int. 1 Found 1 131 ACGTGGC 125 (Mism.= 0) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 128 ACGTGTC 134 (Mism.= 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 134 GACACGTGGC 125 (Mism.= 0) TFBS AC: RSP01160//OS: tobacco (Nicotiana plumbaginifolia) /GENE: CAB/TFBS: G-box /BF: CG-1 Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 136 ATgAcACGTGGC 125 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 133 ACACGTGG 126 (Mism.= 0) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 17 CTACGTGG 24 (Mism.= 0) TFBS AC: RSP01305//OS: tobacco (Nicotiana tabacum) /GENE: Thio h2/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 205 ctCACCCTAA 196 (Mism.= 2) TFBS AC: RSP01450//OS: rice (Oryza sativa) /GENE: OsFDH/TFBS: OsFDH-OsIRO2-BS /BF: OsIRO2 Motifs on "-" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 134 GACACGTGGcTaA 122 (Mism.= 2) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 18 tACGTGGC 25 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 132 CACGTGGC 125 (Mism.= 0) TFBS AC: RSP01719//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (2) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 26 TGcCACGTAGGa 15 (Mism.= 2) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00261 Up.Conf.Int. 1 Found 1 124 AgCCACGTGTCa 135 (Mism.= 2) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00233 Up.Conf.Int. 1 Found 2 135 TGaCACGTGGcT 124 (Mism.= 2) 26 TGCCACGTaGGa 15 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 125 GCCACGTGTC 134 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 134 GaCACGTGgC 125 (Mism.= 2) TFBS AC: RSP01861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 18 TACGTGGC 25 (Mism.= 0) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 125 GCCAcGTGTC 134 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00849 Up.Conf.Int. 1 Found 1 125 GcCACGTGTC 134 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00849 Up.Conf.Int. 1 Found 1 134 GACACGTGgC 125 (Mism.= 1) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 18 TAcGTGGCA 26 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 135 TGACACGTGGCt 124 (Mism.= 1) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00941 Up.Conf.Int. 1 Found 2 17 CtACGTGGCa 26 (Mism.= 2) 126 CCACGTGtCa 135 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 133 aCACGTGGCt 124 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 125 gCCACGTGTC 134 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 134 GACACGTG 127 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 134 GACACGTGGC 125 (Mism.= 2) TFBS AC: RSP02056//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLOWERING LOCUS T (FT)/TFBS: CORE2 /BF: CONSTANS (CO) Motifs on "-" Strand: Mean Exp. Number 0.00022 Up.Conf.Int. 1 Found 1 146 GATTGTGGTTATGAcac 130 (Mism.= 3) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 125 gCCACGTGtC 134 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 134 gaCACGTGGC 125 (Mism.= 2) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 134 GACACGTGGC 125 (Mism.= 1) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "-" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 133 ACACGTGGC 125 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 125 GCCACGTGTc 134 (Mism.= 1) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 134 GACACGTGGc 125 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 134 GACACGTGGc 125 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 134 GACACGTGGc 125 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 127 CACGTGTC 134 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 128 ACGTGTC 134 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 19 ACGTGGC 25 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00672 Up.Conf.Int. 1 Found 1 131 ACGTGGC 125 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00984 Up.Conf.Int. 1 Found 1 125 GcCACGTGtC 134 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 134 GACACGTGgC 125 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 134 GACACGTGGC 125 (Mism.= 1) Totally 66 motifs of 54 different TFBSs have been found ____________________________________________________________ >PLPR0217..AC:U48864..OS:Arabidopsis thaliana..GENE:prha..PROD:PRHA..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.19 T - 0.27 C - 0.14 TFBS AC: RSP00112//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 228 TGACGTAA 235 (Mism.= 0) TFBS AC: RSP00233//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS5 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "-" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 236 TtTACGTCAC 227 (Mism.= 1) TFBS AC: RSP01657//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MP/ARF5 (At1g19850)/TFBS: C/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 226 agTGACGTAAAC 237 (Mism.= 2) TFBS AC: RSP01918//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: DNase I-footprint 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00339 Up.Conf.Int. 1 Found 1 183 GCTCCAG 177 (Mism.= 0) TFBS AC: RSP02095//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE1 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 48 TTCATGAA 55 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 55 TTCATGAA 48 (Mism.= 0) TFBS AC: RSP02190//OS: tomato (Lycopersicon esculentum) /GENE: LeACS4/TFBS: CArG (LeACS4-a) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00770 Up.Conf.Int. 1 Found 1 90 CAAAAATAAG 81 (Mism.= 1) Totally 7 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0218..AC:U75274..OS:Arabidopsis thaliana..GENE:ACBP..PROD:acyl-CoA binding protein..[ -200: +51]..CDS:+90..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.30 C - 0.18 TFBS AC: RSP00021//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box7 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 105 AAAAAGTAAAgA 116 (Mism.= 1) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 2 126 aTTTtCTTTTTCTTTa 111 (Mism.= 3) 104 TTTTGtTTTcTCTTTg 89 (Mism.= 3) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 177 AGAAACAA 170 (Mism.= 0) TFBS AC: RSP01260//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS7 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 39 CTACGTGT 46 (Mism.= 0) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 219 TgAACCCTAA 210 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 219 TGAACCCTAA 210 (Mism.= 0) TFBS AC: RSP01305//OS: tobacco (Nicotiana tabacum) /GENE: Thio h2/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00985 Up.Conf.Int. 1 Found 1 219 TgaACCCTAA 210 (Mism.= 2) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 40 TACGTGTAatTC 51 (Mism.= 2) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 208 TTTCAAAG 201 (Mism.= 0) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 48 TTACACGTAggA 37 (Mism.= 2) TFBS AC: RSP01891//OS: Boea hygrometrica /GENE: BhGolS1/TFBS: W-box 2 /BF: BhWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 190 tTGTGACCcT 199 (Mism.= 2) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 116 AAAAAGAAA 124 (Mism.= 0) TFBS AC: RSP02216//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: ACE1 (FHY1) /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 46 ACACGTAG 39 (Mism.= 0) TFBS AC: RSP02962//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box D /BF: BZR1 Motifs on "-" Strand: Mean Exp. Number 0.00493 Up.Conf.Int. 1 Found 1 61 gACAACTGAG 52 (Mism.= 1) Totally 15 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0219..AC:U76423..OS:Arabidopsis thaliana..GENE:ATHATPLC1G..PROD:phosphoinositol-specific phospholipase C delta..[ -200: +51]..CDS:+52..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.38 C - 0.17 TFBS AC: RSP00359//OS: barley (Hordeum vulgare) /GENE: HVA1s/TFBS: GCCGAC motif /BF: HvCBF1 Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 42 GCCGAC 47 (Mism.= 0) TFBS AC: RSP00444//OS: maize /GENE: cyPPDK1/TFBS: box d /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 75 gAtAAAGAAAGAAA 62 (Mism.= 2) TFBS AC: RSP00473//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS3 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00078 Up.Conf.Int. 1 Found 1 193 gATGTGTtTGTTC 181 (Mism.= 2) TFBS AC: RSP00632//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CIV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 11 TCGGtTTATAATa 23 (Mism.= 2) TFBS AC: RSP00699//OS: Brassica oleracea /GENE: SLG13/TFBS: Box IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 113 aGAAAAAtTCATaGA 127 (Mism.= 3) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00815 Up.Conf.Int. 1 Found 1 70 AGAAAGAAA 62 (Mism.= 0) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 2 144 AGATAGAGA 152 (Mism.= 1) 150 AGATAGAGA 158 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 2 144 AGATAGAGA 152 (Mism.= 1) 150 AGATAGAGA 158 (Mism.= 1) TFBS AC: RSP00952//OS: maize (Zea mays) /GENE: stress tolerance-related genes/TFBS: DRE 2 /BF: ZmDREB1A Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 42 GCCGAC 47 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 143 GAGAtAGAGAtAGAGAt 159 (Mism.= 3) TFBS AC: RSP02098//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE4 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 90 GAATAATTC 98 (Mism.= 0) TFBS AC: RSP02141//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE1 /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 50 TcTGTCGGcT 41 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 205 TTTCTTGTTTT 215 (Mism.= 0) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 205 TTTCTTGTTTT 215 (Mism.= 1) TFBS AC: RSP02204//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: MYCS (SmPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00920 Up.Conf.Int. 1 Found 1 205 TTTCTTGTTTT 215 (Mism.= 2) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 205 TTTCTTGTTTT 215 (Mism.= 2) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 205 TTTCTTGTTTT 215 (Mism.= 1) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 205 TTTCTTGTTTT 215 (Mism.= 1) TFBS AC: RSP02229//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GAC-box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 42 GCCGAC 47 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 2 159 aTCTCTaTCTCTaTCT 144 (Mism.= 3) 157 CTCTaTCTCTaTCTCa 142 (Mism.= 3) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "-" Strand: Mean Exp. Number 0.00784 Up.Conf.Int. 1 Found 1 74 aTAAAGAAAGAA 63 (Mism.= 1) TFBS AC: RSP02517//OS: wheat (Triticum durum) /GENE: TdCor410b/TFBS: CRT1 /BF: TaDREB3 Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 42 GCCGAC 47 (Mism.= 0) TFBS AC: RSP02598//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCYS4/TFBS: DRE2 /BF: DREB2C Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 42 GCCGAC 47 (Mism.= 0) Totally 26 motifs of 23 different TFBSs have been found ____________________________________________________________ >PLPR0220..AC:U76670..OS:Arabidopsis thaliana..GENE:AtDMC1..PROD:AtDMC1..[ -200: +51]..CDS:+81..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.25 C - 0.24 TFBS AC: RSP00069//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif j/k /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 154 CAATTCCGTAA 164 (Mism.= 1) TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 35 TGACGTGGC 43 (Mism.= 0) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 35 TGACGTGG 42 (Mism.= 0) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "-" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 42 CCACGTCA 35 (Mism.= 0) TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "-" Strand: Mean Exp. Number 0.00499 Up.Conf.Int. 1 Found 1 40 ACGTCATAGt 31 (Mism.= 1) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00127 Up.Conf.Int. 1 Found 1 43 GCCACGTCAt 34 (Mism.= 1) TFBS AC: RSP00819//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: ACE-core (AtF3H) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 43 GCCACGTCaT 34 (Mism.= 1) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 43 GCCACGTCaT 34 (Mism.= 1) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00821 Up.Conf.Int. 1 Found 1 42 CCACGTCa 35 (Mism.= 1) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 134 GTTGATTTGA 125 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 37 ACGTGGC 43 (Mism.= 0) TFBS AC: RSP01106//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rHex /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 1 45 AtGCCACGTCA 35 (Mism.= 1) TFBS AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00509 Up.Conf.Int. 1 Found 1 136 CCGTTGATTTGA 125 (Mism.= 2) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 35 TGACGTGG 42 (Mism.= 0) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 43 gCCACGTCAT 34 (Mism.= 1) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "+" Strand: Mean Exp. Number 0.00146 Up.Conf.Int. 1 Found 1 33 taTGACGTGGC 43 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 249 GAGtGAGAGAGAtAGAA 233 (Mism.= 2) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 35 TGACGTGG 42 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 36 gACGTGGC 43 (Mism.= 1) TFBS AC: RSP01656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF19 (At1g19220)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 33 TATGACGTGGCA 44 (Mism.= 1) TFBS AC: RSP01658//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 33 tATGACGTGgCA 44 (Mism.= 2) TFBS AC: RSP01744//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCMPG1 (At3g02840)/TFBS: WRKY11 BS /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 5 tATTGACCGTcG 16 (Mism.= 2) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 34 aTGACGTGGC 43 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 2 233 tTCTaTCTCTCTCaCT 248 (Mism.= 3) 235 CTaTCTCTCTCaCTCT 250 (Mism.= 2) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 37 ACGTGGC 43 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 43 GCCACGTCAta 33 (Mism.= 2) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 239 CTCTCTCAC 247 (Mism.= 0) TFBS AC: RSP02931//OS: maize (Zea mays) /GENE: GRMZM2G091201/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00078 Up.Conf.Int. 1 Found 1 35 TGaCGTGGCA 44 (Mism.= 1) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 35 TGACGTGG 42 (Mism.= 0) Totally 30 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0221..AC:U87794..OS:Arabidopsis thaliana..GENE:nim1..PROD:transcription factor inhibitor I kappa B..[ -200: +51]..CDS:+34..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.34 C - 0.22 TFBS AC: RSP00039//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT56; LAT59;/TFBS: 56/59 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00671 Up.Conf.Int. 1 Found 1 199 TtAATTTGTGA 209 (Mism.= 1) TFBS AC: RSP00406//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE-CHR /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 101 AGTGGtGG 94 -- 5-- 88 TaTGAA 83 (Mism.= 1/ 1) TFBS AC: RSP00501//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em2 /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 128 CGAGCAG 122 (Mism.= 0) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 105 GTTGACTTGA 114 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00464 Up.Conf.Int. 1 Found 1 89 TCTCACCAcCaC 100 (Mism.= 2) TFBS AC: RSP01619//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E2 /BF: GmDof4; GmDosf16 Motifs on "-" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 207 ACaAATTAAAGaG 195 (Mism.= 2) TFBS AC: RSP01789//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNAT2/TFBS: AS1-AS2 BS II (KNAT2 A) /BF: AS1-AS2 Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 103 TCGTTGACT 111 (Mism.= 0) TFBS AC: RSP01939//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NPR1/TFBS: W-box element /BF: AtWRKY18; AtWRKY26; AtWRKY62 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 106 TTGACTTGACTTGGCTCTGCTCGTCAA 132 (Mism.= 0) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "+" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 107 TGACTTGAC 115 (Mism.= 0) TFBS AC: RSP02930//OS: maize (Zea mays) /GENE: GRMZM2G138689/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 52 TGAaATGTAA 61 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0222..AC:Z18891..OS:Betula pendula..GENE:BP8..PROD:BP8, embryogenic protein..[ -200: +51]..CDS+1165..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.25 T - 0.24 C - 0.18 TFBS AC: RSP00049//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 33 gGCACGTGTC 42 (Mism.= 1) TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00220 Up.Conf.Int. 1 Found 1 12 GCCcCGTGGC 3 (Mism.= 1) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 39 ACGTGCCGC 31 (Mism.= 1) TFBS AC: RSP00066//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1b /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 39 ACGTGCCGC 31 (Mism.= 0) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 3 GCCACGgGGC 12 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 12 GCCcCGTGGC 3 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 42 GACACGTGcC 33 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00479 Up.Conf.Int. 1 Found 1 43 TGACACGTGcCg 32 (Mism.= 2) TFBS AC: RSP00479//OS: tobacco (Nicotiana tabacum) /GENE: ZGT/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 44 AtGACACGTGcCGC 31 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 41 ACACGTG 35 (Mism.= 0) TFBS AC: RSP00629//OS: arabidopsis (Arabidopsis thaliana) /GENE: Lhcb1*3/TFBS: CCA1 BS2 /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 144 AAAAATCT 151 (Mism.= 0) TFBS AC: RSP00894//OS: Solanum melongena /GENE: SmCP/TFBS: ERE 2 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 217 AATTCAAG 224 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00479 Up.Conf.Int. 1 Found 1 32 cGgCACGTGTCA 43 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 33 GgCACGTGtC 42 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 42 GaCACGTGCC 33 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00769 Up.Conf.Int. 1 Found 1 33 ggCACGTGTC 42 (Mism.= 2) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 36 ACGTGTC 42 (Mism.= 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00147 Up.Conf.Int. 1 Found 1 42 GACACGTGCC 33 (Mism.= 1) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 42 gACACGTGCC 33 (Mism.= 1) TFBS AC: RSP01673//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AT4G17550/TFBS: MYC2 BS (AT4G17550) /BF: MYC2 Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 29 AaGCGgCACGTGTCaTAT 46 (Mism.= 3) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 33 GgCACGTGTC 42 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 33 GgCACGTGTC 42 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 42 GACACGTGcC 33 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "-" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 43 TGACACGTGcCg 32 (Mism.= 2) TFBS AC: RSP01978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(P) /BF: EIN3/EIL1 Motifs on "+" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 79 ATGTATGT 86 (Mism.= 0) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00895 Up.Conf.Int. 1 Found 1 33 ggCACGTGTC 42 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 42 GACACGTG 35 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 42 gACACGTGcC 33 (Mism.= 2) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 42 GACACGTGCC 33 (Mism.= 1) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 32 CggCACGTGTCA 43 (Mism.= 2) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 33 GgCACGTGTc 42 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00769 Up.Conf.Int. 1 Found 1 42 GACACGTGcc 33 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00769 Up.Conf.Int. 1 Found 1 42 GACACGTGcc 33 (Mism.= 2) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 35 CACGTGTC 42 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 36 ACGTGTC 42 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 42 GACACGTGcC 33 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 42 gACACGTGcC 33 (Mism.= 2) Totally 37 motifs of 34 different TFBSs have been found ____________________________________________________________ >PLPR0223..AC:Y10657..OS:Chlorococcum littorale..GENE:rca..PROD:Rubisco activase..[ -200: +51]..CDS:+29..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.26 T - 0.25 C - 0.24 TFBS AC: RSP00021//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box7 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 39 AcAAAGTAAAAA 50 (Mism.= 1) TFBS AC: RSP00049//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 169 CGCACtTGTC 178 (Mism.= 1) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 200 GCCACTTtTC 209 (Mism.= 1) TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 18 TCCACGTgTC 9 (Mism.= 1) TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00727 Up.Conf.Int. 1 Found 1 9 GACACGTgGA 18 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 88 tCACGTGGCC 79 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 88 tCACGTGGCC 79 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 87 CACGTGGC 80 (Mism.= 0) TFBS AC: RSP00188//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 1 18 TCcACGTGTC 9 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 9 GACACGTGGa 18 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 104 TGACACGgGcCA 115 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 210 TGAaAaGTGGCA 199 (Mism.= 2) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 80 GCCACGTgAG 89 (Mism.= 1) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 80 GCCACGTgAG 89 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00768 Up.Conf.Int. 1 Found 1 18 TCCACGTGTC 9 (Mism.= 0) TFBS AC: RSP00640//OS: maize (Zea mays) /GENE: GRF1/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 88 TCACGTGG 81 (Mism.= 0) TFBS AC: RSP00641//OS: maize (Zea mays) /GENE: GRF2/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 88 TCACGTGG 81 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 9 GaCACGTGGA 18 (Mism.= 1) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 87 CACGTGGC 80 (Mism.= 0) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "+" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 80 GCCACGTgAG 89 (Mism.= 1) TFBS AC: RSP00740//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 11 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 1 80 GCCACGTGAG 89 (Mism.= 0) TFBS AC: RSP00830//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: RRE (AtCHS) /BF: BHLH factors R, C1, Sn Motifs on "-" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 245 CTTCATCTGCat 234 (Mism.= 2) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 199 TGCCACtTtTCA 210 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 115 TGgCcCGTGTCA 104 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 18 TCCACGTGTC 9 (Mism.= 0) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 237 CAgATGAAGA 246 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 9 GACACGTGGa 18 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 10 ACACGTGG 17 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 18 TCCACGTgTC 9 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 87 CACGTGGC 80 (Mism.= 0) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 19 cTCCACGTGTCT 8 (Mism.= 1) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 18 tCCACGTGTC 9 (Mism.= 1) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 89 CTcACGTGGC 80 (Mism.= 1) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 88 tCACGTGGCC 79 (Mism.= 1) TFBS AC: RSP01956//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MT2B/TFBS: A-region /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 4 TaGcaGACACGTGGA 18 (Mism.= 3) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 18 tCCACGTGTC 9 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 9 GACACGTG 16 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "-" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 18 TCCACGTGTC 9 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 113 CCATTTTTTG 122 (Mism.= 1) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 232 TGCATGGTG 224 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 9 GACACGTGGA 18 (Mism.= 0) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 9 GACACGTGGA 18 (Mism.= 0) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 9 GACACGTGGA 18 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 16 CACGTGTC 9 (Mism.= 0) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "+" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 10 aCACGTGGAG 19 (Mism.= 1) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "+" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 10 aCACGTGGAG 19 (Mism.= 1) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00297 Up.Conf.Int. 1 Found 1 89 CTCACGTGGc 80 (Mism.= 1) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 89 CTCACGTGgC 80 (Mism.= 1) Totally 48 motifs of 46 different TFBSs have been found ____________________________________________________________ >PLPR0224..AC:Y14608..OS:Chlamydomonas reinhardtii..GENE:Csbp..PROD:sedoheptulose-1,7-biphosphatase..[ -200: +51]..CDS:+142..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.23 T - 0.25 C - 0.31 TFBS AC: RSP00866//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: G-box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 150 GCACGTTG 157 (Mism.= 0) TFBS AC: RSP01639//OS: tobacco (Nicotiana tabacum) /GENE: PR-Q; ACS2/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 136 GATTGTCGTT 127 (Mism.= 1) TFBS AC: RSP01878//OS: tomato (Lycopersicon esculentum) /GENE: LeACS2/TFBS: LeCp BS /BF: LeCp Motifs on "+" Strand: Mean Exp. Number 0.00147 Up.Conf.Int. 1 Found 1 78 TAAAATAT 85 (Mism.= 0) TFBS AC: RSP02098//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE4 /BF: tomato HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00665 Up.Conf.Int. 1 Found 1 175 GAATATTTC 167 (Mism.= 1) TFBS AC: RSP02946//OS: maize (Zea mays) /GENE: Antimicrobal peptide/TFBS: CIB1 BS /BF: CIB1 Motifs on "-" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 156 AACGTGCG 149 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0225..AC:M87526..OS:Chlamydomonas reinhardtii..GENE:RSP4..PROD:flagellar radial spoke protein..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): +14 +23 +28 +36 |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.24 T - 0.21 C - 0.33 TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 237 CTAcAAATAC 246 (Mism.= 1) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 237 CTAcAAATAC 246 (Mism.= 1) TFBS AC: RSP01977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(D) /BF: EIN3/EIL1 Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 96 ATGCATCT 103 (Mism.= 0) TFBS AC: RSP02193//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 83 CCATTAAATG 92 (Mism.= 1) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 230 AAAgTATCT 238 (Mism.= 1) TFBS AC: RSP02410//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS3 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 236 ATACTTTG 229 (Mism.= 0) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 230 AAAgTATCT 238 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0226..AC:M87526..OS:Chlamydomonas reinhardtii..GENE:RSP6..PROD:flagellar radial spoke protein..[ -200: +51]..CDS:+163..TSS:201 (+1) |Other Plants | CCAAT motif on reverse strand Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.23 T - 0.26 C - 0.27 TFBS AC: RSP00566//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: TATA P /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 241 CCTTGaATAT 250 (Mism.= 1) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 195 TTgCACGTaATT 184 (Mism.= 2) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 39 TGCATGATG 47 (Mism.= 0) TFBS AC: RSP02512//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR2/TFBS: AtSGR2-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 45 TCATGCAG 38 (Mism.= 0) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0227..AC:X96502..OS:Chlamydomonas reinhardtii..GENE:hsp70b..PROD:heat shock protein 70B..[ -200: +51]..CDS:+111..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.27 T - 0.19 C - 0.29 TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 218 GgCACTTGTC 227 (Mism.= 1) TFBS AC: RSP00661//OS: soybean (Glycine max) /GENE: vspB/TFBS: JA-RD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00335 Up.Conf.Int. 1 Found 1 136 AaCCTAGAACCccCA 150 (Mism.= 3) TFBS AC: RSP00866//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: G-box /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 234 GCACGTTG 227 (Mism.= 0) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 73 TCAgCAAcCTCA 62 (Mism.= 2) TFBS AC: RSP02437//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MINI3/TFBS: W3-box /BF: MINI3 Motifs on "-" Strand: Mean Exp. Number 0.00808 Up.Conf.Int. 1 Found 1 229 TTGACAA 223 (Mism.= 0) TFBS AC: RSP02946//OS: maize (Zea mays) /GENE: Antimicrobal peptide/TFBS: CIB1 BS /BF: CIB1 Motifs on "+" Strand: Mean Exp. Number 0.00476 Up.Conf.Int. 1 Found 1 228 AACGTGCG 235 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0228..AC:Y10182..OS:Catharanthus roseus..GENE:str1..PROD:strictosidine synthase..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): -7 -5 -2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.33 C - 0.22 TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 18 tATATTTTTATC 7 (Mism.= 1) TFBS AC: RSP00224//OS: Catharanthus roseus /GENE: Str/TFBS: JERE /BF: ORCA1; ORCA2; ORCA3 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 98 ACATCACTCTTAGACCGCCTTCTTTGAAAGTGATTTCCCTTGGACCTT 145 (Mism.= 0) TFBS AC: RSP00615//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: C-rich GG1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00944 Up.Conf.Int. 1 Found 1 155 CTCACC 150 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 97 aCCACGTGGA 88 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 89 CCACGTGG 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 96 CCACGTGG 89 (Mism.= 0) TFBS AC: RSP00724//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I/G-box /BF: HY5 and other unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 68 GATAAGc 74 --15-- 90 CACGTGGt 97 (Mism.= 1/ 1) TFBS AC: RSP00751//OS: Catharanthus roseus /GENE: STR/TFBS: BN-2 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00131 Up.Conf.Int. 1 Found 1 2 AAACCGATAAAA 13 (Mism.= 0) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00763 Up.Conf.Int. 1 Found 1 11 AAAATATAT 19 (Mism.= 0) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00477 Up.Conf.Int. 1 Found 1 98 TaCCACGTGGAg 87 (Mism.= 2) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 155 CTCACCAAaCa 145 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 88 TCCACGTGgt 97 (Mism.= 2) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00784 Up.Conf.Int. 1 Found 1 96 CCACGTgG 89 (Mism.= 1) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "+" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 142 CCTTGTTTGG 151 (Mism.= 1) TFBS AC: RSP01175//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 2 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 212 AGCTGCCCcTC 222 (Mism.= 1) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 156 ACTCACCaAaCA 145 (Mism.= 2) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 163 CCcACAAACTCa 152 (Mism.= 2) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 142 CCTTGTTTGG 151 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 89 CCACGTGG 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 96 CCACGTGG 89 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 75 CTATAAATA 83 (Mism.= 0) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 163 cCcACAAACTCA 152 (Mism.= 2) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 126 TTTCAAAG 119 (Mism.= 0) TFBS AC: RSP01611//OS: Catharanthus roseus /GENE: STR/TFBS: ZCT BS /BF: ZCT1/ZCT2/ZCT3 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 103 ACTCTTAGACCGCCTTCTTTGAAAGTGATTTCCCTTG 139 (Mism.= 0) TFBS AC: RSP01821//OS: tobacco (Nicotiana tabacum) /GENE: Pr-1a/TFBS: MBSII box /BF: Myb1 Motifs on "+" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 146 GTTTGGT 152 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 89 CCACGTGGta 98 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 96 CCACGTGGag 87 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 97 ACCACGTGga 88 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 97 AcCACGTGgA 88 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 88 TCCACGTGGt 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00433 Up.Conf.Int. 1 Found 1 97 aCCACGTGGa 88 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 89 CCACGTGG 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 96 CCACGTGG 89 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 89 cCACGTGG 96 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00950 Up.Conf.Int. 1 Found 1 96 cCACGTGG 89 (Mism.= 1) TFBS AC: RSP02329//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 3 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 152 ACCAAAC 146 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 88 tCCACGTGgT 97 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 97 acCACGTGGA 88 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 88 TcCACGTGgT 97 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 97 acCACGTGGA 88 (Mism.= 2) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00109 Up.Conf.Int. 1 Found 1 90 CACGTGGT 97 (Mism.= 0) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 89 CCACGTGG 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 96 CCACGTGG 89 (Mism.= 0) TFBS AC: RSP02748//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 2 (IRX8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 153 CACCAAAC 146 (Mism.= 0) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 153 CACCAAaC 146 (Mism.= 1) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 153 CACCAAaC 146 (Mism.= 1) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 153 CACCAAaC 146 (Mism.= 1) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 153 CACCAAaC 146 (Mism.= 1) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 153 CACCAAaC 146 (Mism.= 1) TFBS AC: RSP02848//OS: Duncan grapefruit, Citrus sinensis /GENE: CsLOB1/TFBS: EBE /BF: PthA4 Motifs on "-" Strand: Mean Exp. Number 0.00026 Up.Conf.Int. 1 Found 1 150 cAAACAAgGTcCAAGGgAAA 131 (Mism.= 4) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 96 cCACGTGGAG 87 (Mism.= 1) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 96 cCACGTGGAG 87 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 97 AcCACGTGGa 88 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 88 tcCACGTGGT 97 (Mism.= 2) Totally 54 motifs of 47 different TFBSs have been found ____________________________________________________________ >PLPR0229..AC:U06937..OS:Chlamydomonas reinhardtii..GENE:CRY1..PROD:ribosomal protein S14..[ -200: +51]..CDS:+415..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.38 T - 0.20 C - 0.20 TFBS AC: RSP00872//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 241 TGTGgGACAT 250 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 32 tGCACGTGAT 41 (Mism.= 1) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 29 TATGTGGCA 21 (Mism.= 0) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 33 GCACGTGA 40 (Mism.= 0) TFBS AC: RSP02447//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS2 /BF: HB05; HB12 Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 179 CgATTATTT 187 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 32 tGCACGTGAT 41 (Mism.= 1) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0230..AC:AJ012550..OS:Citrus sinensis..GENE:acs1..PROD:ACC synthase..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.29 C - 0.25 TFBS AC: RSP00286//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 13 TCTgAaCTACC 3 (Mism.= 2) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 174 TAAATGCA 167 (Mism.= 0) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 13 TCTgAaCTACCA 2 (Mism.= 2) TFBS AC: RSP01754//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmMYB92 BS3 /BF: GmMYB92 Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 13 TCTgAaCTACC 3 (Mism.= 2) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0231..AC:U39931..OS:Chlorella vulgaris..GENE:nitrate reductase..PROD:nitrate reductase..[ -200: +51]..CDS:+54..TSS:201 (+1) # Alternative TSS(s): -30 -24 |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.22 T - 0.22 C - 0.34 TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 35 TgTAAATACgAG 46 (Mism.= 2) TFBS AC: RSP00631//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CII /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00078 Up.Conf.Int. 1 Found 1 18 TGTcGTTgTTGTT 30 (Mism.= 2) TFBS AC: RSP00739//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 1 homolog (2) /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 42 TATtTACaAACC 31 (Mism.= 2) TFBS AC: RSP01468//OS: Chlorella vulgaris /GENE: NR/TFBS: CPRF BS /BF: CPRF Motifs on "+" Strand: Mean Exp. Number 0.00056 Up.Conf.Int. 1 Found 1 111 CTCGAGACACTCTCGCG 127 (Mism.= 0) TFBS AC: RSP01639//OS: tobacco (Nicotiana tabacum) /GENE: PR-Q; ACS2/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00652 Up.Conf.Int. 1 Found 1 15 GATTGTCGTT 24 (Mism.= 1) TFBS AC: RSP01767//OS: maize (Zea mays) /GENE: Bz1/TFBS: AT-rich element /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00950 Up.Conf.Int. 1 Found 1 94 aAAAAATTT 86 (Mism.= 1) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 84 TGaAATTTTT 93 (Mism.= 1) TFBS AC: RSP02840//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ARR10 BS3 /BF: ARR10 Motifs on "+" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 49 AGATCTT 55 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0232..AC:X57171..OS:Dianthus caryophyllus..GENE:CARSR12..PROD:CARSR12..[ -200: +51]..CDS:+145..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.45 G - 0.09 T - 0.29 C - 0.17 TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 182 AATATTTTTAaT 193 (Mism.= 1) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 182 AATATTTTTAaT 193 (Mism.= 1) TFBS AC: RSP00471//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS1 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 117 tTGTGGGGCCC 107 (Mism.= 1) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 207 AGAgAGGAA 199 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00627 Up.Conf.Int. 1 Found 1 207 AGAGAGGAA 199 (Mism.= 0) TFBS AC: RSP01068//OS: barley (Hordeum vulgare) /GENE: Synthetic OLIGOs/TFBS: HvH21 BS /BF: HvH21 Motifs on "-" Strand: Mean Exp. Number 0.00472 Up.Conf.Int. 1 Found 1 37 TCTGACACT 29 (Mism.= 0) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 250 CTAAAATTGG 241 (Mism.= 1) TFBS AC: RSP02317//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DREB2A/TFBS: ABRE /BF: AREB/ABF Motifs on "-" Strand: Mean Exp. Number 0.00999 Up.Conf.Int. 1 Found 1 34 GACACtTA 27 (Mism.= 1) TFBS AC: RSP02888//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/GATA/MADS/3RMYB/NAC BS /BF: bHLH, GATA, MADS, 3RMYB, NAC Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 101 AACGgGGG 108 (Mism.= 1) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 115 GTGGGGCC 108 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0233..AC:X65606..OS:Hordeum vulgare..GENE:BKIN12..PROD:protein kinase..[ -200: +51]..CDS:+117..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.30 C - 0.27 TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 142 GCCACTTGTt 133 (Mism.= 1) TFBS AC: RSP00111//OS: pea (Pisum sativum) /GENE: PS-IAA4/5/TFBS: AuxRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00142 Up.Conf.Int. 1 Found 1 74 ATGTCCCAT 82 (Mism.= 0) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 132 TaACAaGTGGCA 143 (Mism.= 2) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 141 CCACTTG 135 (Mism.= 0) TFBS AC: RSP00610//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 250 GgaCACAAGATTGA 237 (Mism.= 2) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "+" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 222 GTTCAAAGGGG 232 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 143 TGCCACtTGTtA 132 (Mism.= 2) TFBS AC: RSP00943//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box III /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 107 TCATTTCACAc 117 (Mism.= 1) TFBS AC: RSP01596//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box III /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 117 gTGTGAAATGA 107 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 142 gCCACTTGT 134 (Mism.= 1) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 10 CCAAAtTTGG 19 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 19 CCAAATTTGG 10 (Mism.= 1) TFBS AC: RSP02211//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: P1BS (NtPT3) /BF: PHR1 (P1) Motifs on "-" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 182 GAATATAC 175 (Mism.= 0) TFBS AC: RSP02305//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS2 (W) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 199 ATCTTGACGCAT 210 (Mism.= 2) TFBS AC: RSP02307//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.1) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 199 ATCTTGACGCAT 210 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 141 CCACTTG 135 (Mism.= 0) TFBS AC: RSP02850//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VITL1/TFBS: VP2 /BF: WRKY46 Motifs on "-" Strand: Mean Exp. Number 0.00833 Up.Conf.Int. 1 Found 1 14 TTTGGgCAAAgT 3 (Mism.= 2) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 67 cAAGGTCAAgTG 56 (Mism.= 2) TFBS AC: RSP02950//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/1 /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 183 AGCGCGCGtA 192 (Mism.= 1) TFBS AC: RSP02959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box A /BF: BZR1; ARF7 Motifs on "-" Strand: Mean Exp. Number 0.00420 Up.Conf.Int. 1 Found 1 63 gTCAAGTGTG 54 (Mism.= 1) Totally 20 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0234..AC:X77175 X77165..OS:Lycopersicon esculentum..GENE:SOD Cp;Le:1..PROD:chloroplastic Cu, Zn superoxid dismutase..[ -200: +51]..CDS+1224..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.43 G - 0.10 T - 0.27 C - 0.20 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 197 GGAgGCaTGGC 207 (Mism.= 2) TFBS AC: RSP00122//OS: pea, Pisum sativum /GENE: AS1/TFBS: Box C /BF: unknown nuclear protein Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 197 CTCCCAC 191 (Mism.= 0) TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "-" Strand: Mean Exp. Number 0.00303 Up.Conf.Int. 1 Found 1 202 GCCtCCTC 195 (Mism.= 1) TFBS AC: RSP00202//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE GRA /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 205 CATGCCtCC 197 (Mism.= 1) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 209 CGgCCATGCcT 199 (Mism.= 2) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 211 GGCGGC 206 (Mism.= 0) TFBS AC: RSP00578//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: LRE-TATA M1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00048 Up.Conf.Int. 1 Found 1 161 AAAACaTTATCATTtTATcAAt 182 (Mism.= 4) TFBS AC: RSP00579//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: LRE-TATA M2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 176 AaAATGATAAtGTTTTA 160 (Mism.= 2) TFBS AC: RSP00580//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: LRE-TATA AA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 175 TTATCAaTTCATcATt 190 (Mism.= 3) TFBS AC: RSP00582//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: LRE-TATA LL2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00197 Up.Conf.Int. 1 Found 1 176 AaAATGATAAtGTTTtA 160 (Mism.= 3) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "+" Strand: Mean Exp. Number 0.00854 Up.Conf.Int. 1 Found 1 162 AAACaTTATCATTT 175 (Mism.= 1) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 205 gGCCGCC 211 (Mism.= 1) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 205 gGCCGCC 211 (Mism.= 1) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 206 GCCGCC 211 (Mism.= 0) TFBS AC: RSP02895//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 224 ACCACAACC 232 (Mism.= 0) Totally 22 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0235..AC:X58253..OS:Lycopersicon esculentum..GENE:ubi3..PROD:ubiquitin..[ -200: +51]..CDS:+67..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.17 T - 0.21 C - 0.22 TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 173 TTAGGGTTT 165 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 165 AAACCCTAA 173 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 173 TTAGGGTTT 165 (Mism.= 0) TFBS AC: RSP00661//OS: soybean (Glycine max) /GENE: vspB/TFBS: JA-RD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00542 Up.Conf.Int. 1 Found 1 222 ACCCTAGAAgCcgCA 236 (Mism.= 3) TFBS AC: RSP00663//OS: soybean (Glycine max) /GENE: VspB/TFBS: SRD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 168 CCCtAATAAAgTG 180 (Mism.= 2) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "-" Strand: Mean Exp. Number 0.00889 Up.Conf.Int. 1 Found 1 113 CCtTTGGAG 105 (Mism.= 1) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00927 Up.Conf.Int. 1 Found 1 164 aAAACCCTAA 173 (Mism.= 1) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 205 TTCCATCAaCaAA 217 (Mism.= 2) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 115 CCAAAAATGG 124 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 124 CCATTTTTGG 115 (Mism.= 0) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 165 AAACCCTAA 173 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0236..AC:U40387..OS:Medicago sativa..GENE:PO22..PROD:coil protein..[ -200: +51]..CDS:+66..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.40 C - 0.19 TFBS AC: RSP00017//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF3-BE /BF: SEF3, soybean Embryo Factor 3 Motifs on "+" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 207 AtCCCA 212 --27-- 240 AACCTA 245 (Mism.= 1/ 1) TFBS AC: RSP00036//OS: Brassica napus /GENE: napA/TFBS: ABRE Bp /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 84 CAAACACC 77 (Mism.= 0) TFBS AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 126 TGAATTAATG 117 (Mism.= 1) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00538 Up.Conf.Int. 1 Found 1 126 TGAATTAATG 117 (Mism.= 1) TFBS AC: RSP00841//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: 12 nt palindrome /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 102 TtTGGCaCCACA 113 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 113 TGTGGtGCCAaA 102 (Mism.= 2) TFBS AC: RSP00894//OS: Solanum melongena /GENE: SmCP/TFBS: ERE 2 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 121 AATTCAAG 128 (Mism.= 0) TFBS AC: RSP01473//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00208 Up.Conf.Int. 1 Found 1 152 AACAAATTCCATT 164 (Mism.= 2) TFBS AC: RSP01854//OS: potato (Solanum tuberosum) /GENE: PR-10a/TFBS: IR1/IR2 /BF: Why1 (PBF-2) Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 222 TGACAAAATTGTCA 235 (Mism.= 2) TFBS AC: RSP02005//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 2 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00514 Up.Conf.Int. 1 Found 1 218 CTTgTGACAAaA 229 (Mism.= 2) TFBS AC: RSP02289//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: ATCT-motif /BF: 63-kDa TF; 52-kDa (b3-domain) TF Motifs on "-" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 184 AATCTAATCTA 174 (Mism.= 1) Totally 11 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0237..AC:L08425..OS:Zea mays..GENE:Zm-ER abp1..PROD:auxin-binding protein..[ -200: +51]..CDS:+321..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.19 T - 0.34 C - 0.20 TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00712 Up.Conf.Int. 1 Found 1 194 TcAATCCAcTGG 205 (Mism.= 2) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 1 54 CAAGTGGTtCTt 65 (Mism.= 2) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 60 CCACTTG 54 (Mism.= 0) TFBS AC: RSP00566//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: TATA P /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 26 CtTTGTATAT 17 (Mism.= 1) TFBS AC: RSP01046//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: NON /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 241 GAATCCAAC 233 (Mism.= 1) TFBS AC: RSP01091//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 16 ATAGcATCAAA 6 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 61 aCCACTTGT 53 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 60 CCACTTG 54 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0238..AC:X79005..OS:Nicotiana tabacum..GENE:eIF-4A..PROD:translation initiation factor..[ -200: +51]..CDS:+874..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.17 T - 0.35 C - 0.21 TFBS AC: RSP01435//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: BoxII /BF: RNFG2 Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 55 TCCCCCCCCA 46 (Mism.= 2) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 24 gTTTTACACT 15 (Mism.= 1) TFBS AC: RSP01966//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 219 GCAAAACT 212 (Mism.= 0) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 78 TCATGCAA 71 (Mism.= 0) TFBS AC: RSP02538//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN1/TFBS: WUS BS 2 (KAN1) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 28 ACTAATAC 35 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0239..AC:U33175..OS:Oryza sativa..GENE:SPS1..PROD:sucrose phosphate synthase..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): +3 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.22 T - 0.16 C - 0.41 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 208 ACACGTGGC 200 (Mism.= 0) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00918 Up.Conf.Int. 1 Found 1 200 GCCACgTGTC 209 (Mism.= 1) TFBS AC: RSP00094//OS: maize (Zea mays) /GENE: GapC4/TFBS: AnRegE /BF: tobacco nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 136 CcAcACCAGCAACaGTCCAG 155 (Mism.= 3) TFBS AC: RSP00095//OS: maize (Zea mays) /GENE: GapC4/TFBS: GCBP-2 BS /BF: GCBP-2 Motifs on "-" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 139 GTGGGCCCG 131 (Mism.= 0) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 207 CACGTGGC 200 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 209 GACACGTGGC 200 (Mism.= 0) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 199 TGcCACGTGtCA 210 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 210 TGACACGTGGCA 199 (Mism.= 0) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00918 Up.Conf.Int. 1 Found 1 200 gCCACGTGTC 209 (Mism.= 1) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 232 cTCTCTCTCCT 242 (Mism.= 1) TFBS AC: RSP00697//OS: Brassica oleracea /GENE: SLG13/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 6 GTTTGT 11 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 207 CACGTGGC 200 (Mism.= 0) TFBS AC: RSP00724//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I/G-box /BF: HY5 and other unknown transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00062 Up.Conf.Int. 1 Found 1 231 GATgAGA 225 --17-- 207 CACGTGGC 200 (Mism.= 1/ 0) TFBS AC: RSP00762//OS: Brassica oleracea /GENE: SLG2/TFBS: Box II /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 6 GTTTGT 11 (Mism.= 0) TFBS AC: RSP00767//OS: Brassica campestris /GENE: SLG8/TFBS: Box II /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 6 GTTTGT 11 (Mism.= 0) TFBS AC: RSP00772//OS: Brassica oleracea /GENE: SLR1/TFBS: Box II /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 6 GTTTGT 11 (Mism.= 0) TFBS AC: RSP00777//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box II /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 6 GTTTGT 11 (Mism.= 0) TFBS AC: RSP00842//OS: maize (Zea mays) /GENE: H3C4/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 36 CTCGGATC 43 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00953 Up.Conf.Int. 1 Found 1 241 GGAGAGAGA 233 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 241 GGAGAGAGA 233 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 199 TGCCACGTGTCA 210 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 210 TGaCACGTGgCA 199 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 199 TGCCACGTGtcA 210 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 210 TGaCACGTGGcA 199 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 200 GCCACGTGTC 209 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00627 Up.Conf.Int. 1 Found 1 209 GACACGTGGC 200 (Mism.= 0) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 208 ACACGTGG 201 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 207 CACGTGGC 200 (Mism.= 0) TFBS AC: RSP01581//OS: tomato (Lycopersicon esculentum) /GENE: rbcS-1/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 200 GcCACGTGtCACC 212 (Mism.= 2) TFBS AC: RSP01589//OS: soybean (Glycine max) /GENE: SRS-1/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 200 GCCACGTGTCACC 212 (Mism.= 1) TFBS AC: RSP01593//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 209 GACACGTGGCAG 198 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00491 Up.Conf.Int. 1 Found 1 200 GCCACGTGTC 209 (Mism.= 0) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 200 GCCAcGTGTC 209 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 200 GcCACGTGTC 209 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 209 GACACGTGgC 200 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 199 TGcCACGTGtCA 210 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 210 TGACACGTGGCA 199 (Mism.= 0) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00479 Up.Conf.Int. 1 Found 1 200 gCCACGTGTC 209 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 209 GACACGTG 202 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 209 gACACGTGgC 200 (Mism.= 2) TFBS AC: RSP02105//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 50 AAAAGAT 56 (Mism.= 0) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00092 Up.Conf.Int. 1 Found 1 209 GACACGTGGC 200 (Mism.= 1) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "-" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 208 ACACGTGGC 200 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 224 CTCTCatcCTCTCTCT 239 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 241 GGAGAGAGAG 232 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 200 GCCACGTGTc 209 (Mism.= 1) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 209 GACACGTGGc 200 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 209 GACACGTGGc 200 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 209 GACACGTGGc 200 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 202 CACGTGTC 209 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 209 GACACGTGgC 200 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 209 gACACGTGGC 200 (Mism.= 1) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 84 GTGGGCCC 91 (Mism.= 0) Totally 53 motifs of 48 different TFBSs have been found ____________________________________________________________ >PLPR0240..AC:M60951..OS:Pisum sativum..GENE:CL22..PROD:ribosomal protein CL22..[ -200: +51]..CDS:+54..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.44 G - 0.12 T - 0.36 C - 0.08 TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 224 AAGATAAGA 216 (Mism.= 0) TFBS AC: RSP00255//OS: arabidopsis (Arabidopsis thaliana) /GENE: ProDH/TFBS: ACTCAT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 238 ACTCATCaT 246 (Mism.= 1) TFBS AC: RSP00739//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 1 homolog (2) /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 69 TATtTAaCAACC 58 (Mism.= 2) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00679 Up.Conf.Int. 1 Found 1 242 TGAGTGAATG 233 (Mism.= 2) TFBS AC: RSP00915//OS: maize (Zea mays) /GENE: b-32/TFBS: B3 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 247 GATGATGAGT 238 (Mism.= 2) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00519 Up.Conf.Int. 1 Found 1 203 CAAATGAAaA 194 (Mism.= 1) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00519 Up.Conf.Int. 1 Found 1 203 CAAATGAAAa 194 (Mism.= 1) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 118 AATtTTTTTTCTG 106 (Mism.= 1) TFBS AC: RSP02182//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp23/IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 85 ATTGAAAAG 93 (Mism.= 0) TFBS AC: RSP02689//OS: green algae Dunaliella bardawil (Dunaliella salina) /GENE: Dbzds/TFBS: HRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 238 ACTCATCaT 246 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0241..AC:X77806..OS:Pyrenomonas salina..GENE:histone H4..PROD:histone H4..[ -200: +51]..CDS:+79..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.22 C - 0.29 TFBS AC: RSP00018//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF4 /BF: SEF4, soybean Embryo Factor 4 Motifs on "+" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 17 ATTTTTG 23 (Mism.= 0) TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 78 TGACGTGGA 86 (Mism.= 1) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 78 TGACGTGG 85 (Mism.= 0) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 85 CCACGTCA 78 (Mism.= 0) TFBS AC: RSP00646//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00058 Up.Conf.Int. 1 Found 1 28 GAAATcAAAAATGG 15 (Mism.= 1) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 170 TTcATAATgTTTT 158 (Mism.= 2) TFBS AC: RSP01115//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 23 CAAAAAT 17 (Mism.= 0) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00360 Up.Conf.Int. 1 Found 1 165 AATgTTTTTTCgG 153 (Mism.= 2) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 78 TGACGTGG 85 (Mism.= 0) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 86 TCCACGTCAa 77 (Mism.= 1) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 78 TGACGTGG 85 (Mism.= 0) TFBS AC: RSP01757//OS: soybean (Glycine max) /GENE: a2/TFBS: BBS /BF: B Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 81 GTCAAGAC 74 (Mism.= 0) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 240 TCTCTTGTTGG 230 (Mism.= 2) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 78 TGACGTGG 85 (Mism.= 0) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0242..AC:D29966..OS:Oryza sativa..GENE:CatA..PROD:catalase..[ -200: +51]..CDS:+32..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.23 T - 0.20 C - 0.35 TFBS AC: RSP00095//OS: maize (Zea mays) /GENE: GapC4/TFBS: GCBP-2 BS /BF: GCBP-2 Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 60 GTGGGCCCG 52 (Mism.= 0) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 135 TTATATA 129 (Mism.= 0) TFBS AC: RSP00535//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: LRE-TATA AA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 144 GCCT 141 -- 6-- 134 TATATA 129 (Mism.= 0/ 0) TFBS AC: RSP00745//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 5 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 141 tAAAGGTTATaT 130 (Mism.= 2) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 178 AGAAACAA 185 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 178 AGAAACAA 185 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00380 Up.Conf.Int. 1 Found 1 199 GGAGTGAGAG 190 (Mism.= 1) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 71 GTGGcACCGG 80 (Mism.= 1) TFBS AC: RSP02715//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: AC (DkANR) /BF: DkMyb2 Motifs on "+" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 28 AcCCAACCAT 37 (Mism.= 1) TFBS AC: RSP02978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLC/TFBS: ABI4 BS /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 76 TGCCACAC 69 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0243..AC:L35844..OS:Oryza sativa..GENE:RGA1..PROD:G protein alpha subunit..[ -200: +51]..CDS+1580..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.27 T - 0.20 C - 0.28 TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 15 cCCACGTGGA 6 (Mism.= 1) TFBS AC: RSP00699//OS: Brassica oleracea /GENE: SLG13/TFBS: Box IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 113 TGtAAAAcTCAaCGA 127 (Mism.= 3) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 7 CCACGTGG 14 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 14 CCACGTGG 7 (Mism.= 0) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 16 gcCCACGTGGAA 5 (Mism.= 2) TFBS AC: RSP01021//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: Gap box 3 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 72 ATTAAAA 78 (Mism.= 0) TFBS AC: RSP01168//OS: Vicia faba /GENE: LeB4/TFBS: GC element /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00094 Up.Conf.Int. 1 Found 1 143 AAGGTCCCT 135 (Mism.= 0) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00142 Up.Conf.Int. 1 Found 1 151 CTTTTTTGGG 160 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 7 CCACGTGG 14 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 14 CCACGTGG 7 (Mism.= 0) TFBS AC: RSP01614//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: accD P-box /BF: GmDof4 Motifs on "-" Strand: Mean Exp. Number 0.00046 Up.Conf.Int. 1 Found 1 159 CcAAAAAAGTTCa 147 (Mism.= 2) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00419 Up.Conf.Int. 1 Found 1 5 TtCCACGTGGGc 16 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 7 CCACGTGGgC 16 (Mism.= 1) TFBS AC: RSP01988//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: 5A element W /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 159 CCAAAAA 153 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 6 TCCACGTGGg 15 (Mism.= 1) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 151 CTTTTTTgGG 160 (Mism.= 1) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 7 CCACGTGG 14 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 14 CCACGTGG 7 (Mism.= 0) TFBS AC: RSP02389//OS: maize (Zea mays) /GENE: GRMZM2G181358_T01/TFBS: LBD motif (GRMZM2G181358_T01) /BF: RTCS Motifs on "-" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 217 GCGCCGCT 210 (Mism.= 0) TFBS AC: RSP02391//OS: maize (Zea mays) /GENE: GRMZM2G132509_T01/TFBS: LBD motif (GRMZM2G132509_T01) /BF: RTCS Motifs on "-" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 217 GCGCCGCT 210 (Mism.= 0) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 7 CCACGTGG 14 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 14 CCACGTGG 7 (Mism.= 0) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 11 GTGGGCCC 18 (Mism.= 0) Totally 23 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0244..AC:S74719..OS:Arabidopsis thaliana..GENE:sedoheptulose-1,7-bisphosphatase, SBPase..PROD:sedoheptulose-1,7-bisphosphatase..[ -200: +51]..CDS:+262..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.17 T - 0.29 C - 0.18 TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 95 AAAATATAT 87 (Mism.= 0) TFBS AC: RSP01045//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box E /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 27 GGgCCCATCAcG 16 (Mism.= 2) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "+" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 51 AAACcTGtCTTT 62 (Mism.= 2) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00414 Up.Conf.Int. 1 Found 1 234 TTCAtTCATTT 224 (Mism.= 1) TFBS AC: RSP02007//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 3 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 35 ACAgGTCAcAGG 46 (Mism.= 2) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0245..AC:S77096..OS:Brassica napus..GENE:btg-26..PROD:aldehyde dehydrogenase related protein..[ -200: +51]..CDS:+47..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.13 T - 0.37 C - 0.25 TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 8 86 AGAGAGAGA 78 (Mism.= 0) 84 AGAGAGAGA 76 (Mism.= 0) 82 AGAGAGAGA 74 (Mism.= 0) 80 AGAGAGAGA 72 (Mism.= 0) 78 AGAGAGAGA 70 (Mism.= 0) 76 AGAGAGAGA 68 (Mism.= 0) 74 AGAGAGAGA 66 (Mism.= 0) 72 AGAGAGAGA 64 (Mism.= 0) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 118 CAAACGTAtA 127 (Mism.= 1) TFBS AC: RSP01153//OS: maize (Zea mays) /GENE: Em/TFBS: Em1c /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 118 CAAACGTAtA 127 (Mism.= 1) TFBS AC: RSP01162//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: TATA/dyad motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 1 101 TATAAAGAcTcTC 113 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 9 93 GtGAGtGAGAGAGAGAg 77 (Mism.= 3) 91 GAGtGAGAGAGAGAGAg 75 (Mism.= 2) 89 GtGAGAGAGAGAGAGAg 73 (Mism.= 2) 87 GAGAGAGAGAGAGAGAg 71 (Mism.= 1) 85 GAGAGAGAGAGAGAGAg 69 (Mism.= 1) 83 GAGAGAGAGAGAGAGAg 67 (Mism.= 1) 81 GAGAGAGAGAGAGAGAg 65 (Mism.= 1) 79 GAGAGAGAGAGAGAGAc 63 (Mism.= 1) 77 GAGAGAGAGAGAGAcgt 61 (Mism.= 3) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 65 gACGTGTACGaC 54 (Mism.= 2) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 117 TcAaACGTATAA 128 (Mism.= 2) TFBS AC: RSP01723//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: C/G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 57 GTaCACGTCTcT 68 (Mism.= 2) TFBS AC: RSP01831//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-2 (At4g10040)/TFBS: ACGT-motif /BF: AREB2/ABF4; GBF3; GBF-like protein; bHLH080 Motifs on "+" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 119 AAACGTAT 126 (Mism.= 0) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 228 TTCAATCATTT 238 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00092 Up.Conf.Int. 1 Found 9 63 gTCTCTCTCTCTCTCT 78 (Mism.= 1) 65 CTCTCTCTCTCTCTCT 80 (Mism.= 0) 67 CTCTCTCTCTCTCTCT 82 (Mism.= 0) 69 CTCTCTCTCTCTCTCT 84 (Mism.= 0) 71 CTCTCTCTCTCTCTCT 86 (Mism.= 0) 73 CTCTCTCTCTCTCTCa 88 (Mism.= 1) 75 CTCTCTCTCTCTCaCT 90 (Mism.= 1) 77 CTCTCTCTCTCaCTCa 92 (Mism.= 2) 79 CTCTCTCTCaCTCaCT 94 (Mism.= 2) TFBS AC: RSP02446//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS1 /BF: HB05; HB12 Motifs on "+" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 230 CAATCATTT 238 (Mism.= 0) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 130 CGGAAAAcTC 139 (Mism.= 1) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 81 CTCTCTCAC 89 (Mism.= 0) Totally 37 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0246..AC:X72927..OS:Solanum commersonii..GENE:OLP..PROD:osmotin-like protein..[ -200: +51]..CDS:+34..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.33 C - 0.18 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00735 Up.Conf.Int. 1 Found 1 163 cAAaAGCCGCC 173 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 56 GGCGGC 61 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 173 GGCGGC 168 (Mism.= 0) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP00923//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: Le-osmotin/TFBS: GCC-box/ERE /BF: LeERF1, LeERF2, LeERF3, LeERF4 Motifs on "+" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 164 AAAAGCCGCCAtAC 177 (Mism.= 1) TFBS AC: RSP00928//OS: hot pepper (Capsicum annuum) /GENE: GCC box-containing genes/TFBS: GCC box /BF: CaERFLP1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 158 AGTGCCAAAAGCCGCCAtACCCCT 181 (Mism.= 1) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "+" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 167 AGCCGCCAT 175 (Mism.= 0) TFBS AC: RSP01320//OS: tobacco (Nicotiana tabacum) /GENE: PRB-1b/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP01321//OS: tobacco (Nicotiana tabacum) /GENE: CHN17/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP01322//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP01323//OS: tobacco (Nicotiana tabacum) /GENE: GLN2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP01324//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn1/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP01325//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP01341//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AtEBP Motifs on "+" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 1 163 cAAaAGCCGCC 173 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00030 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00175 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP01400//OS: Jatropha curcas /GENE: Synthetic oligonucleotides/TFBS: GCC box (ERF BS) /BF: JcERF Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 158 AGTGCCAAAAGCCGCCAtACCCCT 181 (Mism.= 1) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00175 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP01687//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE E /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 171 CGGCTTT 165 (Mism.= 0) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP01833//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-2 (At4g10040)/TFBS: Site II element /BF: AREB2/ABF4; GBF3; GBF-like protein; bHLH080;AtTCP20 Motifs on "-" Strand: Mean Exp. Number 0.00910 Up.Conf.Int. 1 Found 1 240 AGCCCA 235 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP02231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-consensus /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 167 AGCCGCCA 174 (Mism.= 0) TFBS AC: RSP02283//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-150) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00910 Up.Conf.Int. 1 Found 1 240 AGCCCA 235 (Mism.= 0) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 167 AGCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 62 AGCCGCC 56 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 166 aAGCCGCCAt 175 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 63 GAGCCGCCta 54 (Mism.= 2) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 1 27 AACGTGAC 20 (Mism.= 1) TFBS AC: RSP02650//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EBE /BF: ERF (At1g04370, At2g31230); DREB (At3g11020, At4g13620) Motifs on "-" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 66 TAAGAGCCGCC 56 (Mism.= 0) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 168 GCCGCC 173 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 61 GCCGCC 56 (Mism.= 0) TFBS AC: RSP02684//OS: rice (Oryza sativa) /GENE: STAR1/TFBS: ASR5 BS /BF: ASR5 Motifs on "-" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 240 AGCCCAT 234 (Mism.= 0) TFBS AC: RSP02711//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 3 /BF: DOF2 Motifs on "+" Strand: Mean Exp. Number 0.00944 Up.Conf.Int. 1 Found 1 161 GCCaAAAGCCg 171 (Mism.= 2) TFBS AC: RSP02860//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00910 Up.Conf.Int. 1 Found 1 240 AGCCCA 235 (Mism.= 0) Totally 67 motifs of 43 different TFBSs have been found ____________________________________________________________ >PLPR0247..AC:U55278..OS:Lycopersicon esculentum..GENE:DCL..PROD:DCL..[ -200: +51]..CDS:+160..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.36 C - 0.20 TFBS AC: RSP00028//OS: maize (Zea mays) /GENE: 22-kDa zein/TFBS: P-box /BF: Opaque2 Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 185 AtATGTGTAAAGaaGAA 169 (Mism.= 3) TFBS AC: RSP00356//OS: tobacco (Nicotiana tabacum) /GENE: EAS4/TFBS: TAC box /BF: TacBBF (TAC box binding factor) Motifs on "+" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 229 ACTgTACAGTACTt 242 (Mism.= 2) TFBS AC: RSP00431//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB77 BS /BF: AtMYB77 Motifs on "+" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 209 AGCaGCAGTTAG 220 (Mism.= 1) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00619 Up.Conf.Int. 1 Found 1 66 AAAAAAGtGA 75 (Mism.= 1) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 198 GAAGaAgaAGAAGAT 184 (Mism.= 3) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 3 201 GAAGAAGAA 193 (Mism.= 0) 198 GAAGAAGAA 190 (Mism.= 0) 195 GAAGAAGAA 187 (Mism.= 0) TFBS AC: RSP02675//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: GATA element /BF: Unknown GATA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 43 GAATAGATAaaT 54 (Mism.= 2) TFBS AC: RSP02776//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL6 BS /BF: NTL6 Motifs on "-" Strand: Mean Exp. Number 0.00918 Up.Conf.Int. 1 Found 1 69 TTTTCTTA 62 (Mism.= 0) Totally 10 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0248..AC:X58453..OS:Solanum tuberosum..GENE:waxy..PROD:glycogen (starch) synthase..[ -200: +51]..CDS:+279..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.17 T - 0.26 C - 0.29 TFBS AC: RSP00143//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: CE3 /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 133 GACaCGTGTC 142 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00558 Up.Conf.Int. 1 Found 1 142 GACaCGTGTC 133 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00223 Up.Conf.Int. 1 Found 1 133 GACACGTGtC 142 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 142 GACACGTGtC 133 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 132 TGACACGTGtCA 143 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 143 TGACACGTGtCA 132 (Mism.= 1) TFBS AC: RSP00431//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB77 BS /BF: AtMYB77 Motifs on "+" Strand: Mean Exp. Number 0.00927 Up.Conf.Int. 1 Found 1 87 GTCcACAGTTGC 98 (Mism.= 1) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00469 Up.Conf.Int. 1 Found 1 35 AAcAAAGAGA 44 (Mism.= 1) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 212 CCACTTG 206 (Mism.= 0) TFBS AC: RSP00710//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: AT1-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 233 cAATTATTTCTgA 245 (Mism.= 2) TFBS AC: RSP00743//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 3 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 207 aAGTGGTAAcTT 218 (Mism.= 2) TFBS AC: RSP00756//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif B /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00939 Up.Conf.Int. 1 Found 1 182 CTCACACT 189 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 132 TGaCACGTGTCA 143 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 143 TGaCACGTGTCA 132 (Mism.= 1) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 142 GaCACGTGtC 133 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 142 gaCACGTGTC 133 (Mism.= 2) TFBS AC: RSP01003//OS: snapdragon (Antirrhinum majus) /GENE: DEFH125/TFBS: CArG1 /BF: DEF/GLO Motifs on "+" Strand: Mean Exp. Number 0.00734 Up.Conf.Int. 1 Found 1 156 ACAAaTAAGG 165 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 133 GACACGTGTC 142 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 142 GACACGTGtC 133 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 134 ACACGTGT 141 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 141 ACACGTGT 134 (Mism.= 0) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 52 aTGGGCCCTCt 42 (Mism.= 2) TFBS AC: RSP01581//OS: tomato (Lycopersicon esculentum) /GENE: rbcS-1/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00022 Up.Conf.Int. 1 Found 1 133 GACACGTGtCACt 145 (Mism.= 2) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 132 TgACACGTGTcA 143 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 143 TgACACGTGTcA 132 (Mism.= 2) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 213 aCCACTTGT 205 (Mism.= 1) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 133 GaCACGTGTC 142 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 142 GaCACGTGTC 133 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 133 GACACGTGTC 142 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 142 GACACGTGTC 133 (Mism.= 0) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 132 TGACACGTGtCA 143 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 143 TGACACGTGtCA 132 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 142 gaCACGTGTC 133 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 133 GACACGTG 140 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 142 GACACGTG 135 (Mism.= 0) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "+" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 9 cCCAAgTTGAA 19 (Mism.= 2) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 1 133 GACACGTGTC 142 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 142 GACACGTGTC 133 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00233 Up.Conf.Int. 1 Found 1 132 tgACACGTGTCA 143 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 143 tgACACGTGTCA 132 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 134 ACACGTGT 141 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 141 ACACGTGT 134 (Mism.= 0) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 212 CCACTTG 206 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 133 GACACGTGtc 142 (Mism.= 2) TFBS AC: RSP02447//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS2 /BF: HB05; HB12 Motifs on "+" Strand: Mean Exp. Number 0.00193 Up.Conf.Int. 1 Found 1 233 CAATTATTT 241 (Mism.= 0) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 133 gACACGTGTC 142 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 142 gACACGTGTC 133 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 133 GACACGTGtc 142 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 133 GACACGTGTc 142 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 142 GACACGTGTc 133 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 135 CACGTGTC 142 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 140 CACGTGTC 133 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 133 GACACGTGtC 142 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 142 GACACGTGtC 133 (Mism.= 1) Totally 54 motifs of 36 different TFBSs have been found ____________________________________________________________ >PLPR0249..AC:AJ242665..OS:Solanum tuberosum..GENE:mcpi..PROD:metallocarboxypeptidase inhibitor..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.35 C - 0.19 TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 219 gAGATGAaGTTTGCT 233 (Mism.= 2) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 221 GATGAAGTTT 230 (Mism.= 2) TFBS AC: RSP01711//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Others” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 63 CTAGTTTTAG 54 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 121 CAATTTATAG 112 (Mism.= 1) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 208 GCAGCC 203 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 112 CTATAAATtG 121 (Mism.= 1) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0250..AC:AJ237897..OS:Triticum aestivum..GENE:sbe1..PROD:starch branching enzyme I..[ -200: +51]..CDS:+23..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.12 G - 0.20 T - 0.20 C - 0.47 TFBS AC: RSP00004//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif g /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 163 TTTATA 158 (Mism.= 0) TFBS AC: RSP00147//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 158 TATAAA 163 (Mism.= 0) TFBS AC: RSP00629//OS: arabidopsis (Arabidopsis thaliana) /GENE: Lhcb1*3/TFBS: CCA1 BS2 /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00624 Up.Conf.Int. 1 Found 1 95 AAAAATCa 102 (Mism.= 1) TFBS AC: RSP00735//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CCA1 BS /BF: DET1; CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 95 AAAAATCA 102 (Mism.= 0) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 72 GTCCAAAGCGG 82 (Mism.= 2) TFBS AC: RSP01402//OS: wheat (Triticum aestivum) /GENE: alpha-gliadin/TFBS: PB /BF: WPBF Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 158 TaTAAAG 164 (Mism.= 1) TFBS AC: RSP01756//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS2 /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 211 CCATCGAC 218 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 166 CGCTTTATAG 157 (Mism.= 2) TFBS AC: RSP02419//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 92-94 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00058 Up.Conf.Int. 1 Found 1 199 GATCCCAT 192 (Mism.= 0) TFBS AC: RSP02773//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NST2 BS /BF: NST2 Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 114 TGCGTCTCCG 123 (Mism.= 2) TFBS AC: RSP02774//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC092 BS /BF: ANAC092 Motifs on "+" Strand: Mean Exp. Number 0.00646 Up.Conf.Int. 1 Found 1 112 GTTGCGTcT 120 (Mism.= 1) TFBS AC: RSP02824//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PORC/TFBS: SCL27 BS1 /BF: SCL27 Motifs on "+" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 92 GGAAAA 97 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 157 CTATAAAgcG 166 (Mism.= 2) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00559 Up.Conf.Int. 1 Found 1 166 CGCTTTATAG 157 (Mism.= 2) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0251..AC:M62855..OS:Nicotiana tabacum..GENE:ASF-1/G13..PROD:leucine-zipper DNA-binding protein..[ -200: +51]..CDS:+53..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.17 T - 0.39 C - 0.18 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 179 ACAtGTGGC 187 (Mism.= 1) TFBS AC: RSP00026//OS: tobacco (Nicotiana tabacum) /GENE: G13/TFBS: -141 sequence /BF: TGA1a; PG13; Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 69 GCTTTTGATGACTTCAAACAC 89 (Mism.= 0) TFBS AC: RSP00606//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: box II W /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 161 GTaaTGACTTAAAA 174 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 136 AGAAAGAGA 128 (Mism.= 0) TFBS AC: RSP01078//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L0 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 165 ATtACCATCCAA 154 (Mism.= 1) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00800 Up.Conf.Int. 1 Found 1 148 CCTTTcTTGG 157 (Mism.= 1) TFBS AC: RSP02192//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00554 Up.Conf.Int. 1 Found 1 231 CTAAAAAcAG 240 (Mism.= 1) TFBS AC: RSP02305//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS2 (W) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 199 tTCTTGACAAtT 210 (Mism.= 2) TFBS AC: RSP02690//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: TCTAA box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 93 TCTAACGT 100 (Mism.= 0) TFBS AC: RSP02947//OS: maize (Zea mays) /GENE: NAD(P)-binding protein/TFBS: GBF6 BS/1 /BF: GBF6 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 181 AtGTGGCGC 189 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0252..AC:M63224..OS:Triticum aestivum..GENE:germin gf-3.8..PROD:germin..[ -200: +51]..CDS:+102..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.23 G - 0.20 T - 0.30 C - 0.27 TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 181 cCAAcAATATGC 192 (Mism.= 2) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00297 Up.Conf.Int. 1 Found 1 109 gAtGTGGTGCTG 120 (Mism.= 2) TFBS AC: RSP01755//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS1 /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00439 Up.Conf.Int. 1 Found 1 224 CAACCACC 231 (Mism.= 0) TFBS AC: RSP01995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CE1 /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 190 TGCCACCcG 198 (Mism.= 1) TFBS AC: RSP02117//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: AP-1 BS /BF: AP-1 Motifs on "+" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 96 TGAGTTAG 103 (Mism.= 0) TFBS AC: RSP02525//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 108 ATGTACTA 101 (Mism.= 0) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 68 GTTTCCTTCC 77 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0253..AC:Z54358..OS:Zea mays..GENE:cat2..PROD:cat2..[ -200: +51]..CDS+1165..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.18 G - 0.27 T - 0.20 C - 0.34 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 170 gGTcGTTATATA 159 (Mism.= 2) TFBS AC: RSP00040//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (D) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 21 AACAAAC 27 (Mism.= 0) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 165 TTATATA 159 (Mism.= 0) TFBS AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS7 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 181 CGGATAGcGC 172 (Mism.= 1) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 119 cAAAAAGAGc 128 (Mism.= 2) TFBS AC: RSP01174//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 1 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 131 CCTCcCCCGTC 141 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 154 GGCTATATAT 163 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00131 Up.Conf.Int. 1 Found 1 167 CgtTATATAT 158 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 156 CTATAtATA 164 (Mism.= 1) TFBS AC: RSP01822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1/TFBS: MYB1 site /BF: AtMYB30 Motifs on "+" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 21 AACAAAC 27 (Mism.= 0) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "+" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 93 tACAGCAGAAcC 104 (Mism.= 2) Totally 11 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0254..AC:U32636..OS:Zea mays..GENE:Y1..PROD:phytoene synthase..[ -200: +51]..CDS:+14..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.23 G - 0.24 T - 0.21 C - 0.33 TFBS AC: RSP00462//OS: tomato (Lycopersicon esculentum) /GENE: RBCS1; RBCS2; RBCS3A;/TFBS: I-box /BF: IBF Motifs on "-" Strand: Mean Exp. Number 0.00297 Up.Conf.Int. 1 Found 1 157 GGATGAGATgAGA 145 (Mism.= 1) TFBS AC: RSP00722//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 197 GATAAGA 203 (Mism.= 0) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 207 cAAATATAT 215 (Mism.= 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 151 GATGAGATGG 142 (Mism.= 1) TFBS AC: RSP00914//OS: maize (Zea mays) /GENE: b-32/TFBS: B2 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 151 GATGAGATGG 142 (Mism.= 1) TFBS AC: RSP00937//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: I box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00297 Up.Conf.Int. 1 Found 1 145 TCTcATCTCATCC 157 (Mism.= 1) TFBS AC: RSP01053//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GATA-core /BF: HvMCB1 Motifs on "+" Strand: Mean Exp. Number 0.00637 Up.Conf.Int. 1 Found 1 197 GATAAGATA 205 (Mism.= 0) TFBS AC: RSP01988//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: 5A element W /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 47 CCAAAAA 41 (Mism.= 0) TFBS AC: RSP02190//OS: tomato (Lycopersicon esculentum) /GENE: LeACS4/TFBS: CArG (LeACS4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 207 CAAATATAtG 216 (Mism.= 1) TFBS AC: RSP02698//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: I box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 195 AGGATAAGAT 204 (Mism.= 2) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0255..AC:AJ276878, X02982 X00634..OS:Pea, Pisum sativum..GENE:legA..PROD:legumin..[ -200: +51]..CDS:+25..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.13 T - 0.32 C - 0.29 TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 126 TGACGTGTC 134 (Mism.= 1) TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "+" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 34 GCCACCTC 41 (Mism.= 0) TFBS AC: RSP00180//OS: barley (Hordeum vulgare) /GENE: EPB-1/TFBS: GARE-4 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 213 cTAAgAGAATGtTGG 199 (Mism.= 3) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 34 GCCACCTCctCT 45 (Mism.= 2) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "+" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 1 126 TGACGTGT 133 (Mism.= 1) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "-" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 1 133 aCACGTCA 126 (Mism.= 1) TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "-" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 131 ACGTCATtGA 122 (Mism.= 1) TFBS AC: RSP00394//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 58 TGTAAAG 64 (Mism.= 0) TFBS AC: RSP00396//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 58 TGTAAAG 64 (Mism.= 0) TFBS AC: RSP00429//OS: barley (Hordeum vulgare) /GENE: Hor2 gene/TFBS: P-box; hor2-box. /BF: BLZ1 (bZIP transcription factor); PBF; Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 58 TGTAAAG 64 (Mism.= 0) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "-" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 134 GACAcGTCAT 125 (Mism.= 1) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 134 GaCACGTCaT 125 (Mism.= 2) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00962 Up.Conf.Int. 1 Found 1 128 ACGTGTC 134 (Mism.= 0) TFBS AC: RSP01172//OS: pea (Pisum sativum) /GENE: PsLegA/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 74 TCCATAGCCATGCAAGCTGCAGAATG 99 (Mism.= 0) TFBS AC: RSP01173//OS: pea (Pisum sativum) /GENE: PsLegJ/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 75 cCaTAGCCATGCAaGCTGcAgAATG 99 (Mism.= 5) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 126 TGACGTGt 133 (Mism.= 1) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 126 TGACGTGT 133 (Mism.= 0) TFBS AC: RSP01402//OS: wheat (Triticum aestivum) /GENE: alpha-gliadin/TFBS: PB /BF: WPBF Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 58 TGTAAAG 64 (Mism.= 0) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 126 TGACGTGt 133 (Mism.= 1) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "+" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 124 AATGACGTGT 133 (Mism.= 0) TFBS AC: RSP01658//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 124 aATGACGTGTCc 135 (Mism.= 2) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00830 Up.Conf.Int. 1 Found 1 125 aTGACGTGtC 134 (Mism.= 2) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00962 Up.Conf.Int. 1 Found 1 128 ACGTGTC 134 (Mism.= 0) Totally 23 motifs of 23 different TFBSs have been found ____________________________________________________________ >PLPR0256..AC:X58024, M31713 X14207/..OS:Pea, Pisum sativum..GENE:Fed-1..PROD:ferredoxin I precursor..[ -200: +51]..CDS:+97..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.20 TFBS AC: RSP00058//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: CE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00626 Up.Conf.Int. 1 Found 1 138 TGCCACCtG 146 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00114 Up.Conf.Int. 1 Found 1 139 GCCACcTGGC 148 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00114 Up.Conf.Int. 1 Found 1 148 GCCAgGTGGC 139 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 138 TGcCACcTGGCA 149 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 149 TGcCAgGTGGCA 138 (Mism.= 2) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 2 230 TGAATGAATG 221 (Mism.= 1) 226 TGAATGAATG 217 (Mism.= 1) TFBS AC: RSP00878//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Site I /BF: RPCF-1 Motifs on "-" Strand: Mean Exp. Number 0.00107 Up.Conf.Int. 1 Found 1 147 CCAGGTGG 140 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 138 TGCCACcTGgCA 149 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 149 TGCCAgGTGgCA 138 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 138 TGCCACcTGGcA 149 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 149 TGCCAgGTGGcA 138 (Mism.= 2) TFBS AC: RSP01379//OS: pea (Pisum sativum) /GENE: Fd-1/TFBS: fed-CMA1 I-box - G-box] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 114 TAGATAACC 122 --16-- 139 GCCACCTGGCA 149 (Mism.= 0/ 0) TFBS AC: RSP01378//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Fd-2/TFBS: fed-CMA1 [G-box - I-box-like motif] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 139 GCCACcTGGcA 149 -- 0-- 150 GATAGGg 156 (Mism.= 2/ 1) TFBS AC: RSP01379//OS: pea (Pisum sativum) /GENE: Fd-1/TFBS: fed-CMA1 [G-box - I-box-like motif] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 139 GCCACCTGGCA 149 -- 0-- 150 GATAGGG 156 (Mism.= 0/ 0) TFBS AC: RSP01995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CE1 /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 1 138 TGCCACCTG 146 (Mism.= 1) Totally 16 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0257..AC:X74734..OS:Arabidopsis thaliana..GENE:eEF-1beta..PROD:unnamed..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.18 T - 0.44 C - 0.14 TFBS AC: RSP00145//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: SEF3 BS 2 /BF: SEF3 Motifs on "+" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 106 AACCCA 111 (Mism.= 0) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 104 TTAAcCCAATGG 115 (Mism.= 1) TFBS AC: RSP00242//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: AG1 /BF: LFU Motifs on "+" Strand: Mean Exp. Number 0.00092 Up.Conf.Int. 1 Found 1 106 AAcCCAATGGTTc 118 (Mism.= 2) TFBS AC: RSP00338//OS: soybean (Glycine max) /GENE: beta-conglicinin alpha'/TFBS: SEF3 BS /BF: SEF3 Motifs on "+" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 106 AACCCA 111 (Mism.= 0) TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 21 gGGATTATGTG 31 (Mism.= 1) TFBS AC: RSP00651//OS: maize (Zea mays) /GENE: a1/TFBS: C1 PBS/P /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 193 ACCTACCAACg 183 (Mism.= 1) TFBS AC: RSP00746//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 6 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 113 ATtGGGTTAAAA 102 (Mism.= 1) TFBS AC: RSP00828//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: MRE-core (AtFLS) /BF: R2R3-type MYB Motifs on "-" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 197 aAaAACCTACCA 186 (Mism.= 2) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 115 CCATTGGGTTAA 104 (Mism.= 2) TFBS AC: RSP01711//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Others” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00820 Up.Conf.Int. 1 Found 1 71 CTAGATTTAG 62 (Mism.= 0) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "-" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 140 GACAaCAGAAGa 129 (Mism.= 2) TFBS AC: RSP02005//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 2 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00900 Up.Conf.Int. 1 Found 1 145 aTcATGACAACA 134 (Mism.= 2) TFBS AC: RSP02514//OS: tomato (Solanum lycopersicum) /GENE: SlHsp26.1-P/TFBS: HSE (SlHsp26.1-P) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 171 ACGAaCTTTCtA 160 (Mism.= 2) TFBS AC: RSP02944//OS: maize (Zea mays) /GENE: RLK/TFBS: RS2 BS /BF: RS2 Motifs on "-" Strand: Mean Exp. Number 0.00830 Up.Conf.Int. 1 Found 1 196 aAAACCTACC 187 (Mism.= 1) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0258..AC:AB002467..OS:Spinacia oleracea..GENE:APX2..PROD:thylakoid-bound ascorbate peroxidase..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.22 T - 0.25 C - 0.26 TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 222 CCCACaTACC 213 (Mism.= 1) TFBS AC: RSP00295//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CC", comp) /BF: At-TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 1 219 TGGGCT 224 --11-- 236 GaCCCA 241 (Mism.= 1/ 1) TFBS AC: RSP00297//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II/telo-box (motifs 1 & 2) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 1 219 TGGGCT 224 --11-- 236 GaCCCA 241 (Mism.= 1/ 1) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 222 CCCACaTACC 213 (Mism.= 1) TFBS AC: RSP00537//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: TSS CC /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 107 AcCCAATTAggTCAG 121 (Mism.= 3) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 207 GCCgAGTGGA 198 (Mism.= 1) TFBS AC: RSP00934//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2b /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 87 ATcTTTAGTT 96 (Mism.= 1) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "+" Strand: Mean Exp. Number 0.00769 Up.Conf.Int. 1 Found 1 238 CCCAACTTGAT 248 (Mism.= 2) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 146 CGGCCCA 140 (Mism.= 0) TFBS AC: RSP02794//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P8 /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 103 GCTgAAAAAC 94 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0259..AC:AJ223470..OS:Zea mays..GENE:PHYT I..PROD:phytase..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.29 C - 0.24 TFBS AC: RSP00016//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: RY /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 71 CATGCAC 65 (Mism.= 0) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 140 ATACaACTtTGT 129 (Mism.= 2) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 216 ATCCtTATTgTAaGT 230 (Mism.= 3) TFBS AC: RSP01176//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 3 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00186 Up.Conf.Int. 1 Found 1 193 AGCTaCTCCTA 203 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 143 CTATAAATA 151 (Mism.= 0) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 143 CTATAAATAG 152 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 152 CTATTTATAG 143 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 152 CTATTTATAG 143 (Mism.= 1) TFBS AC: RSP02214//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: FHY3/FAR1 BS (FHY1) /BF: FHY3/FAR1 Motifs on "-" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 77 CACGCGC 71 (Mism.= 0) TFBS AC: RSP02215//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: FHY3/FAR1 BS (FHL) /BF: FHY3/FAR1 Motifs on "-" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 77 CACGCGC 71 (Mism.= 0) TFBS AC: RSP02765//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS3 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 105 TACCAAAT 98 (Mism.= 0) TFBS AC: RSP02964//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box F /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 162 ATCATATGAt 171 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 171 ATCATATGAt 162 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 143 CTATAAATAG 152 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 152 CTATTTATAG 143 (Mism.= 0) Totally 15 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0260..AC:AJ223471..OS:Zea mays..GENE:PHYT II..PROD:phytase..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.33 C - 0.20 TFBS AC: RSP00016//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00984 Up.Conf.Int. 1 Found 1 67 CATGCAC 73 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00714 Up.Conf.Int. 1 Found 1 70 CATGCAC 64 (Mism.= 0) TFBS AC: RSP00066//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1b /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 72 ACGTGCTGC 80 (Mism.= 1) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 142 ATACaACTtTGT 131 (Mism.= 2) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 218 ATCCtTATTgTAaGT 232 (Mism.= 3) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 69 TgCACGTGCT 78 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 69 tGCACGTGcT 78 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00840 Up.Conf.Int. 1 Found 1 69 TgCACGTGCt 78 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 78 AGCACGTGCA 69 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00840 Up.Conf.Int. 1 Found 1 69 TgCACGTGCt 78 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 78 AGCACGTGCA 69 (Mism.= 2) TFBS AC: RSP01198//OS: Chlorella vulgaris /GENE: NR/TFBS: USF BS /BF: USF Motifs on "+" Strand: Mean Exp. Number 0.00017 Up.Conf.Int. 1 Found 1 67 CAtgCACGTGCTGC 80 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00476 Up.Conf.Int. 1 Found 1 145 CTATAAATA 153 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00920 Up.Conf.Int. 1 Found 1 24 TCAtATGTGT 33 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 154 CTATTTATAG 145 (Mism.= 1) TFBS AC: RSP02220//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE3 (FHL) /BF: Motifs on "+" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 70 GCACGTGC 77 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 77 GCACGTGC 70 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00786 Up.Conf.Int. 1 Found 1 70 GCACGTGc 77 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00940 Up.Conf.Int. 1 Found 1 77 GCACGTGc 70 (Mism.= 1) TFBS AC: RSP02749//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX9/TFBS: MYB46 BS (IRX9) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00680 Up.Conf.Int. 1 Found 1 104 TACCTAAT 97 (Mism.= 0) TFBS AC: RSP02764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS2 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00680 Up.Conf.Int. 1 Found 1 104 TACCTAAT 97 (Mism.= 0) TFBS AC: RSP02830//OS: poplar (Poplus trichocarpa) /GENE: PtANR1/TFBS: MdMYB9 BS (PtANR1) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 69 TgCACGTGCT 78 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 69 tGCACGTGcT 78 (Mism.= 2) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 145 CTATAAATAG 154 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 154 CTATTTATAG 145 (Mism.= 0) Totally 25 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0261..AC:NM_129811..OS:Arabidopsis thaliana..GENE:serine/threonine protein phosphatase PP2A-3 catalytic subunit gene..PROD:the same as gene name..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.25 T - 0.20 C - 0.18 TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00142 Up.Conf.Int. 1 Found 1 155 ACGCGCCTtCTC 166 (Mism.= 1) TFBS AC: RSP00368//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: tef-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 91 AGGGGtATtATGGTAA 106 (Mism.= 2) TFBS AC: RSP00475//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS5 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 57 AAAcCGGTGaTG 68 (Mism.= 2) TFBS AC: RSP00530//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 176 TCTTcTTTcACT 187 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00666 Up.Conf.Int. 1 Found 16 212 AGAGAGAGA 220 (Mism.= 0) 214 AGAGAGAGA 222 (Mism.= 0) 216 AGAGAGAGA 224 (Mism.= 0) 218 AGAGAGAGA 226 (Mism.= 0) 220 AGAGAGAGA 228 (Mism.= 0) 222 AGAGAGAGA 230 (Mism.= 0) 224 AGAGAGAGA 232 (Mism.= 0) 226 AGAGAGAGA 234 (Mism.= 0) 228 AGAGAGAGA 236 (Mism.= 0) 230 AGAGAGAGA 238 (Mism.= 0) 232 AGAGAGAGA 240 (Mism.= 0) 234 AGAGAGAGA 242 (Mism.= 0) 236 AGAGAGAGA 244 (Mism.= 0) 238 AGAGAGAGA 246 (Mism.= 0) 240 AGAGAGAGA 248 (Mism.= 0) 242 AGAGAGAGA 250 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00430 Up.Conf.Int. 1 Found 13 211 aAGAGAGAGAGAGAGAg 227 (Mism.= 2) 213 GAGAGAGAGAGAGAGAg 229 (Mism.= 1) 215 GAGAGAGAGAGAGAGAg 231 (Mism.= 1) 217 GAGAGAGAGAGAGAGAg 233 (Mism.= 1) 219 GAGAGAGAGAGAGAGAg 235 (Mism.= 1) 221 GAGAGAGAGAGAGAGAg 237 (Mism.= 1) 223 GAGAGAGAGAGAGAGAg 239 (Mism.= 1) 225 GAGAGAGAGAGAGAGAg 241 (Mism.= 1) 227 GAGAGAGAGAGAGAGAg 243 (Mism.= 1) 229 GAGAGAGAGAGAGAGAg 245 (Mism.= 1) 231 GAGAGAGAGAGAGAGAg 247 (Mism.= 1) 233 GAGAGAGAGAGAGAGAg 249 (Mism.= 1) 235 GAGAGAGAGAGAGAGAg 251 (Mism.= 1) TFBS AC: RSP02106//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 208 TTGTCTCTT 200 (Mism.= 0) TFBS AC: RSP02169//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp2/I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 88 ACTTTAATT 80 (Mism.= 0) TFBS AC: RSP02214//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: FHY3/FAR1 BS (FHY1) /BF: FHY3/FAR1 Motifs on "+" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 154 CACGCGC 160 (Mism.= 0) TFBS AC: RSP02215//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: FHY3/FAR1 BS (FHL) /BF: FHY3/FAR1 Motifs on "+" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 154 CACGCGC 160 (Mism.= 0) TFBS AC: RSP02322//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DGAT1/TFBS: CE1-like (1) /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 68 CAtCACCGgTT 58 (Mism.= 2) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 14 251 CTCTCTCTCTCTCTCT 236 (Mism.= 0) 249 CTCTCTCTCTCTCTCT 234 (Mism.= 0) 247 CTCTCTCTCTCTCTCT 232 (Mism.= 0) 245 CTCTCTCTCTCTCTCT 230 (Mism.= 0) 243 CTCTCTCTCTCTCTCT 228 (Mism.= 0) 241 CTCTCTCTCTCTCTCT 226 (Mism.= 0) 239 CTCTCTCTCTCTCTCT 224 (Mism.= 0) 237 CTCTCTCTCTCTCTCT 222 (Mism.= 0) 235 CTCTCTCTCTCTCTCT 220 (Mism.= 0) 233 CTCTCTCTCTCTCTCT 218 (Mism.= 0) 231 CTCTCTCTCTCTCTCT 216 (Mism.= 0) 229 CTCTCTCTCTCTCTCT 214 (Mism.= 0) 227 CTCTCTCTCTCTCTCT 212 (Mism.= 0) 225 CTCTCTCTCTCTCTtc 210 (Mism.= 2) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00833 Up.Conf.Int. 1 Found 1 178 TTCTTTCA 185 (Mism.= 0) TFBS AC: RSP02546//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AS2/TFBS: WUS BS 2 (AS2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 59 TTTAATAC 52 (Mism.= 0) Totally 54 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0262..AC:U60136..OS:Arabidopsis thaliana..GENE:serine/threonine protein phosphatase 2A-4 catalytic subunit gene..PROD:the same as gene name..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): -3 Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.19 T - 0.26 C - 0.22 TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 1 240 TTTAGGG 246 (Mism.= 0) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 90 TGGTCAAATC 99 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 89 ATGGTCAAATC 99 (Mism.= 2) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 100 TGAtTTGACCaTtAT 86 (Mism.= 3) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 212 TTTTtCTTTcTCTcTC 197 (Mism.= 3) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 99 GAtTTGACCATtATa 85 (Mism.= 3) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 202 AGAAAGAAA 210 (Mism.= 0) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 172 AGAGAGGAA 164 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 172 AGAGAGGAA 164 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 3 192 AGAGAGAGA 200 (Mism.= 0) 194 AGAGAGAGA 202 (Mism.= 0) 196 AGAGAGAGA 204 (Mism.= 0) TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "-" Strand: Mean Exp. Number 0.00974 Up.Conf.Int. 1 Found 1 196 TCTCtCGCC 188 (Mism.= 1) TFBS AC: RSP01080//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L2 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 194 tCTCgCCTTCGT 183 (Mism.= 2) TFBS AC: RSP01208//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 151 CCTTTGTTTTGA 162 (Mism.= 2) TFBS AC: RSP01210//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 23 CTTTTATAAG 32 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 5 189 GcGAGAGAGAGAGAGAA 205 (Mism.= 1) 191 GAGAGAGAGAGAGAaAg 207 (Mism.= 2) 193 GAGAGAGAGAGAaAGAA 209 (Mism.= 1) 195 GAGAGAGAGAaAGAaAA 211 (Mism.= 2) 197 GAGAGAGAaAGAaAaAA 213 (Mism.= 3) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00624 Up.Conf.Int. 1 Found 1 250 CTAACCCTAA 241 (Mism.= 2) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00603 Up.Conf.Int. 1 Found 1 250 ctAACCCTAA 241 (Mism.= 2) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 99 GATTTGACCAT 89 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 99 GATTTGACCAT 89 (Mism.= 2) TFBS AC: RSP01631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZCP4/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 109 CTCGAAAGCTA 119 (Mism.= 2) TFBS AC: RSP01636//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP2/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00964 Up.Conf.Int. 1 Found 1 109 CTCGAAAGCTA 119 (Mism.= 2) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 109 CTCGAAAGCTA 119 (Mism.= 2) TFBS AC: RSP01743//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY26) BS /BF: WRKY26 Motifs on "-" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 99 GaTTTGACCATTa 87 (Mism.= 2) TFBS AC: RSP02001//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 4 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 99 GATtTGACCaTT 88 (Mism.= 2) TFBS AC: RSP02008//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 4 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 88 AAtGGTCAAAtC 99 (Mism.= 2) TFBS AC: RSP02084//OS: oomycete, Phytophthora infestans /GENE: Pks1/TFBS: CATTTGTTTT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 151 CcTTTGTTTT 160 (Mism.= 1) TFBS AC: RSP02189//OS: tomato (Lycopersicon esculentum) /GENE: LeACS2/TFBS: CArG (LeACS2-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00727 Up.Conf.Int. 1 Found 1 245 CCTAAATTGG 236 (Mism.= 1) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 245 CCTAAATTGG 236 (Mism.= 1) TFBS AC: RSP02214//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: FHY3/FAR1 BS (FHY1) /BF: FHY3/FAR1 Motifs on "+" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 143 CACGCGC 149 (Mism.= 0) TFBS AC: RSP02215//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: FHY3/FAR1 BS (FHL) /BF: FHY3/FAR1 Motifs on "+" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 143 CACGCGC 149 (Mism.= 0) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 186 TCGTGTGC 179 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 6 211 tTtTCTtTCTCTCTCT 196 (Mism.= 3) 209 tTCTtTCTCTCTCTCT 194 (Mism.= 2) 207 CTtTCTCTCTCTCTCT 192 (Mism.= 1) 205 tTCTCTCTCTCTCTCg 190 (Mism.= 2) 203 CTCTCTCTCTCTCgCc 188 (Mism.= 2) 201 CTCTCTCTCTCgCctT 186 (Mism.= 3) TFBS AC: RSP02593//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE2 (AG2) /BF: AGAMOUS Motifs on "-" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 15 ATAGGTAA 8 (Mism.= 0) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 167 CTCTCTCAC 175 (Mism.= 0) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 1 246 CCCTAAA 240 (Mism.= 0) Totally 46 motifs of 35 different TFBSs have been found ____________________________________________________________ >PLPR0263..AC:X89216..OS:Arabidopsis thaliana..GENE:103-1a..PROD:glutathione transferase..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.24 C - 0.21 TFBS AC: RSP00310//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II** /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 16 AAcGTTcCCtATACA 2 (Mism.= 3) TFBS AC: RSP00495//OS: wheat (Triticum aestivum) /GENE: LMW-glutenin/TFBS: P-box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 27 TGTAAAGT 34 (Mism.= 0) TFBS AC: RSP00686//OS: barley (Hordeum vulgare) /GENE: C-hordein/TFBS: E-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 27 TGTAAAGT 34 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 2 225 AGAGAGAGA 233 (Mism.= 0) 227 AGAGAGAGA 235 (Mism.= 0) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 38 GTTGACTTTA 29 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 2 218 GAGAaAaAGAGAGAGAg 234 (Mism.= 3) 220 GAaAaAGAGAGAGAGAc 236 (Mism.= 3) TFBS AC: RSP02123//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: GARE /BF: GAMYB-like Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 46 AAACAGA 40 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00127 Up.Conf.Int. 1 Found 4 236 gTCTCTCTCTCTtTtT 221 (Mism.= 3) 234 CTCTCTCTCTtTtTCT 219 (Mism.= 2) 232 CTCTCTCTtTtTCTCT 217 (Mism.= 2) 230 CTCTCTtTtTCTCTgT 215 (Mism.= 3) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "+" Strand: Mean Exp. Number 0.00522 Up.Conf.Int. 1 Found 1 43 GTTTCCTTCT 52 (Mism.= 0) Totally 14 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0264..AC:X58339..OS:Hordeum vulgare..GENE:CHS..PROD:chalcone synthase..[ -200: +51]..TSS+1857 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.20 T - 0.22 C - 0.39 TFBS AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: Z element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 230 GCACAgACGT 239 (Mism.= 1) TFBS AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS5 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00513 Up.Conf.Int. 1 Found 1 12 AACCAATCCg 3 (Mism.= 1) TFBS AC: RSP00489//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 16 TACCaACCAA 7 (Mism.= 1) TFBS AC: RSP00627//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: GA-1 SITE /BF: GAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 26 ATGgTAAGG 34 (Mism.= 1) TFBS AC: RSP00651//OS: maize (Zea mays) /GENE: a1/TFBS: C1 PBS/P /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 2 19 tgCTACCAACC 9 (Mism.= 2) 15 ACCaACCAAtC 5 (Mism.= 2) TFBS AC: RSP00739//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 1 homolog (2) /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 20 TtgCTACCAACC 9 (Mism.= 2) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 90 AGGATgGATGg 80 (Mism.= 2) TFBS AC: RSP01236//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: 10 bp Z-BAC- /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 172 TCATAcTCAT 181 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 155 gcCTATATAT 164 (Mism.= 2) TFBS AC: RSP01454//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-II /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 15 ACCAACC 9 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 214 TCACATtTGT 223 (Mism.= 1) TFBS AC: RSP01472//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box-I /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 38 TCTACCTtaCC 28 (Mism.= 2) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 11 ACCAATCcG 3 (Mism.= 1) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 11 ACCAATCcG 3 (Mism.= 1) TFBS AC: RSP01528//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 38 TCTACCTtaCC 28 (Mism.= 2) TFBS AC: RSP01529//OS: pea (Pisum sativum) /GENE: PsCHS3/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 18 GCTACCaaCCA 8 (Mism.= 2) TFBS AC: RSP01530//OS: pea (Pisum sativum) /GENE: PsCHS4/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 18 GCTACCaaCCA 8 (Mism.= 2) TFBS AC: RSP01531//OS: pea (Pisum sativum) /GENE: PsCHS5/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 18 GCTACCaaCCA 8 (Mism.= 2) TFBS AC: RSP01662//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARR8 (At2g41310)/TFBS: C/G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 243 TGTGACGTcTgT 232 (Mism.= 2) TFBS AC: RSP02127//OS: rice (Oryza sativa) /GENE: OsDfr/TFBS: OsC1-MYB BS /BF: OsC1 Motifs on "-" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 15 ACCaACCaATC 5 (Mism.= 2) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 15 ACCAACC 9 (Mism.= 0) TFBS AC: RSP02589//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 15 ACCAACC 9 (Mism.= 0) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 16 TACCAACC 9 (Mism.= 0) TFBS AC: RSP02904//OS: rice (Oryza sativa) /GENE: Os01t0182700/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 15 ACCAACC 9 (Mism.= 0) TFBS AC: RSP02906//OS: rice (Oryza sativa) /GENE: Os05t0499400/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 15 ACCAACC 9 (Mism.= 0) TFBS AC: RSP02907//OS: rice (Oryza sativa) /GENE: Os10t0474900/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 9 GGTTGGT 15 (Mism.= 0) TFBS AC: RSP02908//OS: rice (Oryza sativa) /GENE: Os11to4358/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 15 ACCAACC 9 (Mism.= 0) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 15 ACCAACCA 8 (Mism.= 0) Totally 29 motifs of 28 different TFBSs have been found ____________________________________________________________ >PLPR0265..AC:Y11038..OS:Beta vulgaris..GENE:BV-70/5..PROD:V-ATPase, A subunit..[ -200: +51]..CDS:+232..TSS+1074 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.28 C - 0.24 TFBS AC: RSP00231//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CCAAT box 1 /BF: unknown Motifs on "-" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 205 CCAATCA 199 (Mism.= 0) TFBS AC: RSP00570//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich G1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 18 TAAATTAAAaaTATG 4 (Mism.= 2) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00679 Up.Conf.Int. 1 Found 1 129 GCCACGTtCg 120 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 123 ACGTGGC 129 (Mism.= 0) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 206 ACCAATCAG 198 (Mism.= 0) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 206 ACCAATCAG 198 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00258 Up.Conf.Int. 1 Found 1 122 AACGTGGC 129 (Mism.= 1) TFBS AC: RSP01602//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 170 TCTCAATC 177 (Mism.= 0) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 130 TGCCACGTtcGT 119 (Mism.= 2) TFBS AC: RSP01864//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE2 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00092 Up.Conf.Int. 1 Found 1 122 AACGTGGC 129 (Mism.= 0) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 120 CgaACGTGGC 129 (Mism.= 2) TFBS AC: RSP01966//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 150 GCAAAACT 157 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 123 ACGTGGC 129 (Mism.= 0) TFBS AC: RSP02932//OS: maize (Zea mays) /GENE: GRMZM2G097457/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 229 TGTCGTaTCA 238 (Mism.= 1) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 206 ACCAATCA 199 (Mism.= 1) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "+" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 227 TTTGTCGTATc 237 (Mism.= 1) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0266..AC:AF255059..OS:Pisum sativum..GENE:33RNP..PROD:33 kDa ribonucleoprotein..[ -200: +51]..TSS:201 (+1) # Alternative TSS(s): -2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.06 T - 0.53 C - 0.07 TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 242 TTTAGGG 248 (Mism.= 0) TFBS AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS5 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 131 AACCAATatC 122 (Mism.= 2) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 248 CCCTAAA 242 (Mism.= 0) Totally 3 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0267..AC:D86388..OS:Catharanthus roseus..GENE:CYM..PROD:B-type cyclin..[ -200: +51]..TSS+1630 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.25 C - 0.24 TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 152 AaGCGCCTCtTC 163 (Mism.= 2) TFBS AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/TFBS: MSA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00063 Up.Conf.Int. 1 Found 1 135 AGACCGTTG 143 (Mism.= 0) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 251 ttTcTCGATCCCTTT 237 (Mism.= 3) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 184 CTTTTCTTGG 193 (Mism.= 1) TFBS AC: RSP01505//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 96 GATCGGACG 88 (Mism.= 0) TFBS AC: RSP01506//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 96 GATCGGACG 88 (Mism.= 0) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 184 CTTTTCTTGG 193 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0268..AC:AY770501..OS:Sesamum indicum..GENE: microsomal oleic acid desaturase gen..PROD:microsomal oleic acid desaturase..[ -200: +51] ..CDS:+1747..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.29 T - 0.20 C - 0.24 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 59 ACACGTGGC 67 (Mism.= 0) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 58 GaCACGTGGC 67 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 67 GCCACGTGtC 58 (Mism.= 1) TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 147 CCcCCAACCCCC 136 (Mism.= 1) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 60 CACGTGGC 67 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 58 GACACGTGGC 67 (Mism.= 0) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 57 TGACACGTGGCg 68 (Mism.= 1) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00048 Up.Conf.Int. 1 Found 1 152 CCCCTCCTC 160 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 60 CACGTGGC 67 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 68 cGCCACGTGTCA 57 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 67 GCCACGTGTC 58 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 244 AGAAACAA 251 (Mism.= 0) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 93 GCATGCATGa 102 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 102 tCATGCATGC 93 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 58 GACACGTGGC 67 (Mism.= 0) TFBS AC: RSP01160//OS: tobacco (Nicotiana plumbaginifolia) /GENE: CAB/TFBS: G-box /BF: CG-1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 56 ATgAcACGTGGC 67 (Mism.= 2) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00509 Up.Conf.Int. 1 Found 1 59 ACACGTGG 66 (Mism.= 0) TFBS AC: RSP01446//OS: sesame, Sesamum indicum /GENE: FAD2/TFBS: SeFAD2P-E /BF: SebHLH Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 27 GTGCACACTCCATGTGGGCCAATG 50 (Mism.= 0) TFBS AC: RSP01447//OS: sesame, Sesamum indicum /GENE: FAD2/TFBS: SeFAD2P-G /BF: SebHLH Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 52 GCGGATGACACGTGGCGGGCAACT 75 (Mism.= 0) TFBS AC: RSP01448//OS: rice (Oryza sativa) /GENE: Synthetic oligonucleotides/TFBS: OsIRO2-BS /BF: OsIRO2 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 52 GCGGATGACACGTGGCGGGCAACT 75 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP01460//OS: soybean (Glycine max) /GENE: BiP9/TFBS: ERSE-II /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00100 Up.Conf.Int. 1 Found 1 49 ATTGGCCCACA 39 (Mism.= 2) TFBS AC: RSP01465//OS: soybean (Glycine max) /GENE: BiP6/TFBS: ERSE-II /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00100 Up.Conf.Int. 1 Found 1 49 ATTGGCCCACA 39 (Mism.= 1) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00737 Up.Conf.Int. 1 Found 1 102 TCATGCATGc 93 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 60 CACGTGGC 67 (Mism.= 0) TFBS AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Quant. Seq.) /BF: AT-Hook Proteins Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 206 CAcTcAAATATT 217 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 67 GCCACGTGTC 58 (Mism.= 0) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 67 GCCAcGTGTC 58 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 58 GACACGTGgC 67 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 67 GcCACGTGTC 58 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 57 TGACACGTGGCg 68 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 67 gCCACGTGTC 58 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00509 Up.Conf.Int. 1 Found 1 58 GACACGTG 65 (Mism.= 0) TFBS AC: RSP02030//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ERSE-I /BF: [bZIP28 + NF-YB3] Motifs on "+" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 45 CCAAT 49 --10-- 60 CACG 63 (Mism.= 0/ 0) TFBS AC: RSP02085//OS: pine (Pinus taeda) /GENE: Pta4CLalpha/TFBS: AC element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 144 CCAACCCCCGCC 133 (Mism.= 2) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 58 GACACGTGGC 67 (Mism.= 1) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "+" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 59 ACACGTGGC 67 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "-" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 68 CgcCACGTGTCA 57 (Mism.= 2) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 67 GCCACGTGTc 58 (Mism.= 1) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 58 GACACGTGGc 67 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 58 GACACGTGGc 67 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 58 GACACGTGGc 67 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00509 Up.Conf.Int. 1 Found 1 65 CACGTGTC 58 (Mism.= 0) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 58 GACACGTGgC 67 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 58 gACACGTGGC 67 (Mism.= 1) Totally 54 motifs of 46 different TFBSs have been found ____________________________________________________________ >PLPR0269..AC:X60135..OS:Zea mays..GENE:cat1..PROD:catalase-1..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.28 T - 0.22 C - 0.28 TFBS AC: RSP00280//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: O2-box /BF: Opaque-1, b-ZIP transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 84 TCCACGTgGA 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 93 TCCACGTgGA 84 (Mism.= 1) TFBS AC: RSP00358//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 201 CAACTCCC 194 (Mism.= 0) TFBS AC: RSP00461//OS: maize (Zea mays) /GENE: Cat1/TFBS: ABRE2 /BF: CBF1 Motifs on "+" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 80 GAAGTCCACGTGGAGGTGG 98 (Mism.= 0) TFBS AC: RSP00530//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 231 cCTTTTTTAtCT 220 (Mism.= 2) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 84 tCCACGTGGA 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 93 tCCACGTGGA 84 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 85 CCACGTGG 92 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 92 CCACGTGG 85 (Mism.= 0) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 85 CCACGTGG 92 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 92 CCACGTGG 85 (Mism.= 0) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 126 CTCTCCTCgCtGTCc 112 (Mism.= 3) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 92 CCACGTGGAC 83 (Mism.= 1) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 84 TCCACGTGGa 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 93 TCCACGTGGa 84 (Mism.= 1) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 85 CCACGTGG 92 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 92 CCACGTGG 85 (Mism.= 0) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 85 CCACGTGG 92 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 92 CCACGTGG 85 (Mism.= 0) Totally 19 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0270..AC:D28510..OS:Nicotiana tabacum..GENE:par..PROD:Auxin-response related protein..[ -200: +51]..CDS:+106..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.33 C - 0.18 TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 240 TGAATGAATG 231 (Mism.= 1) TFBS AC: RSP01093//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 183 TCTAAGCAAAt 193 (Mism.= 1) TFBS AC: RSP01182//OS: pea (Pisum sativum) /GENE: GS3A/TFBS: GS3A-F1 BS /BF: GS3A-F1 Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 48 TTctTCTAGTAGAaAAA 32 (Mism.= 3) TFBS AC: RSP01188//OS: Tobacco; Nicotiana tabacum /GENE: Ntl14/TFBS: as114 /BF: TGA1a Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 166 cTACGCAAcCAATGACATCT 185 (Mism.= 2) TFBS AC: RSP01331//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CArG3 (AGL15) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 199 TcACTATAaATAGTAc 214 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 214 gTACTATtTATAGTgA 199 (Mism.= 3) TFBS AC: RSP01332//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DTA4/TFBS: CArG3 (DTA4) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 199 TcACTATAaATAGTAc 214 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 214 gTACTATtTATAGTgA 199 (Mism.= 3) TFBS AC: RSP02006//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 3 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00401 Up.Conf.Int. 1 Found 1 224 tCaATGACATTC 235 (Mism.= 2) TFBS AC: RSP02095//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE1 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 7 TTCATGAA 14 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 14 TTCATGAA 7 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 211 CTATTTATAG 202 (Mism.= 1) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 57 GTCAAAAT 50 (Mism.= 0) TFBS AC: RSP02503//OS: Brachypodium distachyon /GENE: BdXCP1/TFBS: SNBE2 (BdXCP1) /BF: BdSWN5 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 111 TTTCTTGGAAaaGAAGTaT 129 (Mism.= 3) TFBS AC: RSP02527//OS: rice (Oryza sativa, japonica) /GENE: LOG/TFBS: GTAC-motif /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 209 TAGTACTA 216 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 216 TAGTACTA 209 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 202 CTATAAATAG 211 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 211 CTATTTATAG 202 (Mism.= 0) Totally 18 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0271..AC:X54046..OS:Oryza sativa..GENE:PCNA..PROD:proliferating cell nuclear antigen..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.15 G - 0.19 T - 0.24 C - 0.42 TFBS AC: RSP00015//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtCDC6/TFBS: E2F1-BE /BF: E2F1 Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 67 TTTCCCGC 60 (Mism.= 0) TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 87 ACcCGCCTCCaC 76 (Mism.= 2) TFBS AC: RSP00095//OS: maize (Zea mays) /GENE: GapC4/TFBS: GCBP-2 BS /BF: GCBP-2 Motifs on "+" Strand: Mean Exp. Number 0.00100 Up.Conf.Int. 1 Found 1 4 GTGGGCCCG 12 (Mism.= 0) TFBS AC: RSP00165//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fa /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 67 TTTCCCGC 60 (Mism.= 0) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 215 cTAGGGTTT 223 (Mism.= 1) TFBS AC: RSP00292//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIa-IIb /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 5 TGGGCCCGT 13 -- 9-- 23 TGGTCCCACA 32 (Mism.= 0/ 0) TFBS AC: RSP00295//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CC", comp) /BF: At-TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 5 TGGGCC 10 --14-- 25 GtCCCA 30 (Mism.= 0/ 1) TFBS AC: RSP00297//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II/telo-box (motifs 1 & 2) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 5 TGGGCC 10 --14-- 25 GtCCCA 30 (Mism.= 0/ 1) TFBS AC: RSP00298//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-1 /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 67 TTTCCCGC 60 (Mism.= 0) TFBS AC: RSP00300//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIa-IIb /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 5 TGGGCCCGT 13 -- 9-- 23 TGGTCCCACA 32 (Mism.= 0/ 0) TFBS AC: RSP00303//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIa /BF: PCF1;, PCF2; Motifs on "+" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 2 AGGTGGGCCCGT 13 (Mism.= 0) TFBS AC: RSP00306//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIb /BF: PCF1;, PCF2; Motifs on "-" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 32 TGTGGGACCATG 21 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 223 AAACCCTAg 215 (Mism.= 1) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 215 cTAGGGTTT 223 (Mism.= 1) TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00837 Up.Conf.Int. 1 Found 1 36 CAGCTGA 42 (Mism.= 0) TFBS AC: RSP00292//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIb-telo /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 23 TGGTCCCACA 32 --**-- 216 TAGGGTTT 223 (Mism.= 0/ 0) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 75 CCgAAATGT 67 (Mism.= 1) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 223 AAACCCTA 216 (Mism.= 0) TFBS AC: RSP02084//OS: oomycete, Phytophthora infestans /GENE: Pks1/TFBS: CATTTGTTTT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00491 Up.Conf.Int. 1 Found 1 108 CATTTtTTTT 117 (Mism.= 1) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00251 Up.Conf.Int. 1 Found 1 109 ATTTTTTTtT 118 (Mism.= 1) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 216 TAGGGTTT 223 (Mism.= 0) TFBS AC: RSP02318//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CENH3/TFBS: E2F BS /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 60 GCGGGAAA 67 (Mism.= 0) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 59 TTCTTgCA 52 (Mism.= 1) TFBS AC: RSP02516//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-2 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 50 TGGAAGaTTCAG 39 (Mism.= 1) TFBS AC: RSP02666//OS: Oryza sativa /GENE: ClpB-cyt/Hsp100/TFBS: HSE /BF: OsHsfA2c; OsHsfB4b Motifs on "+" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 41 GAATCTTC 48 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 48 GAAGATTC 41 (Mism.= 1) TFBS AC: RSP02704//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtKP1/TFBS: KPRE /BF: unknown nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00031 Up.Conf.Int. 1 Found 1 106 AgGGAGAAATTGgG 93 (Mism.= 2) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "-" Strand: Mean Exp. Number 0.00698 Up.Conf.Int. 1 Found 1 68 GTTTCCCGCT 59 (Mism.= 2) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 223 AAACCCTAg 215 (Mism.= 1) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 85 cCgCCTCCAC 76 (Mism.= 2) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 4 GTGGGCCC 11 (Mism.= 0) Totally 31 motifs of 30 different TFBSs have been found ____________________________________________________________ >PLPR0272..AC:X04333..OS:Pisum sativum..GENE:rbcS-3A..PROD:ribulose bisphosphate carboxylase..[ -200: +51]..CDS:+17..TSS:201 (+1) # Alternative TSS(s): -12 -10 -8 -4 -2 |Taxon: Dicot |Promote Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.30 C - 0.16 TFBS AC: RSP00037//OS: pea (Pisum sativum) /GENE: rbcS-3A/TFBS: Box VI /BF: 3AF1 Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 138 AAATAGATAAATAAAAACATT 158 (Mism.= 0) TFBS AC: RSP00205//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 39 GTGTGGTTAATATG 52 (Mism.= 0) TFBS AC: RSP00228//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 65 ATCATTTTCACT 76 (Mism.= 0) TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00493 Up.Conf.Int. 1 Found 1 132 aTTaTGGTCTTAA 120 (Mism.= 2) TFBS AC: RSP00627//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: GA-1 SITE /BF: GAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 6 ATGATAAGG 14 (Mism.= 0) TFBS AC: RSP00696//OS: Brassica oleracea /GENE: SLG13/TFBS: Box I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 73 GAaAATGATAaAG 61 (Mism.= 2) TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 238 CAGCTGA 232 (Mism.= 0) TFBS AC: RSP00760//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: motif III /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 126 cCATAAT 132 --23-- 156 ATTATAT 162 (Mism.= 1/ 0) TFBS AC: RSP00942//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 39 GTGTGGTTAATATGG 53 (Mism.= 0) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "+" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 58 AAACTTTATCATTT 71 (Mism.= 0) TFBS AC: RSP00999//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 3'-III element /BF: 3AF3 Motifs on "+" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 72 TCACTATCTAA 82 (Mism.= 0) TFBS AC: RSP01333//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Box II, wild) /BF: BGTF Motifs on "+" Strand: Mean Exp. Number 0.00108 Up.Conf.Int. 1 Found 1 38 TGTGTGGTTAATATG 52 (Mism.= 0) TFBS AC: RSP01398//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GATA-1 BS2 /BF: GATA-1 Motifs on "+" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 138 AAATAGATAAATAAAAACATT 158 (Mism.= 0) TFBS AC: RSP01595//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box II /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 39 GTGTGGTTAATATGG 53 (Mism.= 0) TFBS AC: RSP01809//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GT-1bx /BF: GmGT-2A Motifs on "+" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 39 GTGTGGTTAATATG 52 (Mism.= 0) TFBS AC: RSP01925//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II-BOX III /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 39 GTGTGGTTAATATG 52 --12-- 65 ATCATTTTCACT 76 (Mism.= 0/ 0) TFBS AC: RSP02087//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 39 GTGTGGTTAATATG 52 (Mism.= 0) TFBS AC: RSP02088//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 65 ATCATTTTCAC 75 (Mism.= 0) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 154 ACATTATATA 163 (Mism.= 0) TFBS AC: RSP02090//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 180 AAGCTTTGCAA 190 (Mism.= 0) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 57 GCAGCC 52 (Mism.= 0) Totally 21 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0273..AC:X02868..OS:Nicotiana plumbaginifolia..GENE:atp2-1..PROD:ATP synthase beta subunit..[ -200: +51]..CDS:+55..TSS:201 (+1) # Alternative TSS(s): -48 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.27 C - 0.24 TFBS AC: RSP00471//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS1 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00145 Up.Conf.Int. 1 Found 1 1 GTGTGGaGCaC 11 (Mism.= 2) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 68 GAAAAAGgAAAAcaAA 83 (Mism.= 3) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 201 AGAAAGAGA 193 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 2 236 AGAGAGAGA 228 (Mism.= 0) 216 AGAGAGAGA 208 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 2 239 GctAGAGAGAGAGtGAA 223 (Mism.= 3) 235 GAGAGAGAGtGAaAGgA 219 (Mism.= 3) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 200 CTCTCCTtTCtcTCT 214 (Mism.= 3) TFBS AC: RSP01599//OS: spinach (Spinacia oleracea) /GENE: RPS1/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 21 TTTCAAAT 14 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 221 CTtTCaCTCTCTCTCT 236 (Mism.= 2) TFBS AC: RSP02794//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P8 /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 125 GCTTAAAAAa 116 (Mism.= 1) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 153 GTGGGCTC 160 (Mism.= 1) Totally 12 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0274..AC:X53675 S54871..OS:Triticum aestivum..GENE:POX1..PROD:putative peroxidase..[ -200: +51]..CDS:+58..TSS+1287 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.22 T - 0.25 C - 0.24 TFBS AC: RSP00019//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box5 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 33 AGATGGTcgATT 22 (Mism.= 2) TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 105 TCCcCGTCTC 96 (Mism.= 1) TFBS AC: RSP00066//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1b /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 124 ACGTGCAGC 116 (Mism.= 1) TFBS AC: RSP00337//OS: soybean (Glycine max) /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/TFBS: SEF1 BS /BF: SEF1 Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 149 ATATTTATA 141 (Mism.= 0) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 199 CAAGTGcaGCTG 210 (Mism.= 2) TFBS AC: RSP00503//OS: tobacco (Nicotiana tabacum) /GENE: Ntltp1/TFBS: D1 box /BF: Different bZIP factors, including RITA-1 Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 48 CTAGCTAG 55 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 55 CTAGCTAG 48 (Mism.= 0) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 79 ATCCAaATTTTAtGT 65 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 140 CTATAAATA 148 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 155 TCATGCATaT 146 (Mism.= 1) TFBS AC: RSP01499//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 106 gTCCCCGTCT 97 (Mism.= 1) TFBS AC: RSP01500//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 106 gTCCCCGTCT 97 (Mism.= 1) TFBS AC: RSP02304//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS1 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00604 Up.Conf.Int. 1 Found 1 67 TgTCTGACTAgT 56 (Mism.= 2) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 119 GCACGTGA 126 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 141 TATAAATA 148 (Mism.= 0) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 127 CTCACGTGCa 118 (Mism.= 1) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 127 CTCACGTGCa 118 (Mism.= 1) Totally 17 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0275..AC:M16991..OS:Triticum aestivum..GENE:Amy3..PROD:alpha-amylase 3..[ -200: +51]..CDS:+57..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.25 C - 0.22 TFBS AC: RSP00020//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box6 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 121 GcCtAGTAAAAA 110 (Mism.= 2) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00137 Up.Conf.Int. 1 Found 1 150 TATAAATACaAG 161 (Mism.= 1) TFBS AC: RSP00551//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: TSS BB1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 124 CTAcTAAtCTCTaAG 138 (Mism.= 3) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 149 CTATAAATA 157 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 149 CTATAAATAC 158 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 149 CTATAAATAC 158 (Mism.= 0) TFBS AC: RSP02101//OS: maize (Zea mays) /GENE: A1/TFBS: P (-118) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 145 CTTGGAGCTT 136 (Mism.= 2) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0276..AC:U27982..OS:Arabidopsis thaliana..GENE:ACT12..PROD:actin-12..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.31 C - 0.22 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 87 GGACaCGTGtC 97 (Mism.= 2) TFBS AC: RSP00143//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: CE3 /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 88 GACaCGTGTC 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 97 GACaCGTGTC 88 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 88 GACACGTGtC 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 97 GACACGTGtC 88 (Mism.= 1) TFBS AC: RSP00230//OS: parsley, Petroselinum crispum /GENE: CHS-1/TFBS: MRECHS /BF: PcMYB1; (Myb1 from P. crispum) Motifs on "-" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 52 AgCCTAACCT 43 (Mism.= 1) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 88 GaCACGTGtC 97 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00768 Up.Conf.Int. 1 Found 1 97 GaCACGTGtC 88 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 97 gaCACGTGTC 88 (Mism.= 2) TFBS AC: RSP01082//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L4 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00763 Up.Conf.Int. 1 Found 1 65 AtTCTCCAACCt 76 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 88 GACACGTGTC 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00186 Up.Conf.Int. 1 Found 1 97 GACACGTGtC 88 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 89 ACACGTGT 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 96 ACACGTGT 89 (Mism.= 0) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 75 CTAAAAATAG 84 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 84 CTATTTTTAG 75 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 88 GaCACGTGTC 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00768 Up.Conf.Int. 1 Found 1 97 GaCACGTGTC 88 (Mism.= 1) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 189 GAaAaCAGAAGC 178 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00940 Up.Conf.Int. 1 Found 1 88 GACACGTGTC 97 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00940 Up.Conf.Int. 1 Found 1 97 GACACGTGTC 88 (Mism.= 0) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 88 gaCACGTGTC 97 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 1 97 gaCACGTGTC 88 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 88 GACACGTG 95 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00240 Up.Conf.Int. 1 Found 1 97 GACACGTG 90 (Mism.= 0) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 84 CTATTTTTAG 75 (Mism.= 1) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 88 GACACGTGTC 97 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 97 GACACGTGTC 88 (Mism.= 0) TFBS AC: RSP02287//OS: pea (Pisum sativum) /GENE: TRX f/TFBS: EE (TRX f) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00608 Up.Conf.Int. 1 Found 1 108 GAGATATT 115 (Mism.= 0) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 89 ACACGTGT 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 96 ACACGTGT 89 (Mism.= 0) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "-" Strand: Mean Exp. Number 0.00288 Up.Conf.Int. 1 Found 1 243 GaAAAGAAAGAg 232 (Mism.= 2) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 88 GaCACGTGTc 97 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 97 GaCACGTGTc 88 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 88 GACACGTGtc 97 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 88 gACACGTGTC 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 97 gACACGTGTC 88 (Mism.= 1) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 89 ACACGTGTcT 98 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 88 GACACGTGtc 97 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 88 GACACGTGTc 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00360 Up.Conf.Int. 1 Found 1 97 GACACGTGTc 88 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00240 Up.Conf.Int. 1 Found 1 90 CACGTGTC 97 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 95 CACGTGTC 88 (Mism.= 0) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 15 CGGAAgAATC 6 (Mism.= 1) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 88 GACACGTGtC 97 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 97 GACACGTGTC 88 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 88 gACACGTGtC 97 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 97 gACACGTGtC 88 (Mism.= 2) Totally 48 motifs of 30 different TFBSs have been found ____________________________________________________________ >PLPR0277..AC:X17031..OS:Spinacia oleracea..GENE:nir..PROD:nitrate reductase..[ -200: +51]..CDS:+146..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.13 T - 0.30 C - 0.31 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: SEF3 BS 1 /BF: SEF3 Motifs on "-" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 87 CACCCA 82 (Mism.= 0) TFBS AC: RSP00263//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Non /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 96 CATCCAACG 104 (Mism.= 0) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 44 GGCGGC 49 (Mism.= 0) TFBS AC: RSP00626//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box I /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 93 GgCCaTCCAACgTAACC 109 (Mism.= 3) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 218 TTCTCTCTCCT 228 (Mism.= 0) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 227 GGAGAGAGA 219 (Mism.= 0) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "-" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 50 AGCCGCCAA 42 (Mism.= 1) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01563//OS: wheat (Triticum aestivum) /GENE: H3 (TH012)/TFBS: HBP-2 BS /BF: WZF-1 Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 96 CATCCAACG 104 (Mism.= 0) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 75 CTAGTTTTGG 84 (Mism.= 1) TFBS AC: RSP02231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-consensus /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 50 AGCCGCCA 43 (Mism.= 0) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 50 AGCCGCC 44 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "-" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 51 tAGCCGCCAa 42 (Mism.= 2) TFBS AC: RSP02618//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE1 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 106 TACGTTGG 99 (Mism.= 0) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 49 GCCGCC 44 (Mism.= 0) TFBS AC: RSP02715//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: AC (DkANR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 47 cGCCAACCAT 38 (Mism.= 1) TFBS AC: RSP02896//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "+" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 107 ACCAAACAT 115 (Mism.= 0) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 46 gCCAACCA 39 (Mism.= 1) Totally 35 motifs of 35 different TFBSs have been found ____________________________________________________________ >PLPR0278..AC:D13975..OS:Psophocarpus tetragonolobus..GENE:major Kunitz chymotrypsin inhibitor A..PROD:chymotrypsin inhibitor A (WCI-3)..[ -200: +51]..CDS:+41..TSS:201 (+1) |Taxon: Dicot |Promoter: T Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.42 G - 0.12 T - 0.33 C - 0.14 TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 210 AGAAAGGAA 218 (Mism.= 0) TFBS AC: RSP00962//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GLM1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00706 Up.Conf.Int. 1 Found 1 205 TGAGTAG 211 (Mism.= 0) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 225 CCACAAGC 232 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 174 CTATTTATAG 165 (Mism.= 1) TFBS AC: RSP02739//OS: Arabidopsis (Arabidopsis thaliana) /GENE: E2Fa/TFBS: LBD18/LBD33 BS /BF: LBD18/LBD33 Motifs on "+" Strand: Mean Exp. Number 0.00741 Up.Conf.Int. 1 Found 1 183 CGGCG 187 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 165 CTATAAATAG 174 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 174 CTATTTATAG 165 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0279..AC:M28158..OS:Oryza sativa..GENE:GT3..PROD:glutelin 1, seed storage protein..[ -200: +51]..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.31 C - 0.24 TFBS AC: RSP00041//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (P) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 126 tAACAAACTcTATC 139 (Mism.= 2) TFBS AC: RSP00190//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: GCN4 box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 103 TGAGTCA 109 (Mism.= 0) TFBS AC: RSP00192//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: AACA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 126 TAACAAACTCTA 137 (Mism.= 0) TFBS AC: RSP00193//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 97 ATcTagTGAGTCACTTCA 114 (Mism.= 3) TFBS AC: RSP00194//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 96 TATCTAGTGAGTCACTTCA 114 (Mism.= 0) TFBS AC: RSP00196//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 77 CTTTTGTGTACCTTA 91 (Mism.= 0) TFBS AC: RSP00249//OS: Catharanthus roseus /GENE: CYM/TFBS: MSA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00838 Up.Conf.Int. 1 Found 1 28 AGACCaTTG 36 (Mism.= 1) TFBS AC: RSP00254//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: Py box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00469 Up.Conf.Int. 1 Found 1 18 CCTTTTC 12 (Mism.= 0) TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 6 AGCAAAGaAA 15 (Mism.= 1) TFBS AC: RSP00666//OS: rice (Oryza sativa), Oryza sativa /GENE: GluB-1/TFBS: GCN4 motif /BF: RISBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 103 TGAGTCA 109 (Mism.= 0) TFBS AC: RSP00676//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: PY-Box /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00469 Up.Conf.Int. 1 Found 1 18 CCTTTTC 12 (Mism.= 0) TFBS AC: RSP00690//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 97 ATcTagTGAGTCACTTCA 114 (Mism.= 3) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 77 CTTTtGTGTACCttA 91 (Mism.= 3) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00706 Up.Conf.Int. 1 Found 1 127 AACAAACTCTATC 139 (Mism.= 0) TFBS AC: RSP00959//OS: barley (Hordeum vulgare) /GENE: Hor2/TFBS: GLM2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 103 TGAGTCA 109 (Mism.= 0) TFBS AC: RSP01061//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCN4 motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00838 Up.Conf.Int. 1 Found 1 102 GTGAGTCAC 110 (Mism.= 0) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00851 Up.Conf.Int. 1 Found 1 127 AACAAACTCTATC 139 (Mism.= 0) TFBS AC: RSP02093//OS: Petunia hybrida /GENE: SSU11/TFBS: GT-motif (LRE) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00016 Up.Conf.Int. 1 Found 1 116 ATGTGGaCATTAAc 129 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 180 CCTTTTATAG 171 (Mism.= 1) TFBS AC: RSP02280//OS: rice (Oryza sativa) /GENE: OsLKR/SDH/TFBS: GSN4 box /BF: RISBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 109 TGACTCA 103 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 171 CTATAAAAGG 180 (Mism.= 1) TFBS AC: RSP02992//OS: Brassica juncea /GENE: BjCHI1/TFBS: WBl-4 /BF: BjMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 113 GaAGTGACTCAc 102 (Mism.= 2) Totally 22 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0280..AC:M64682..OS:Spinacia oleracea..GENE:GT3..PROD:nuclear-encoded plastid ribosomal protein L21..[ -200: +51]..CDS:+118..TSS:201 (+1)..NOTE: Promoter P1 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.24 C - 0.22 TFBS AC: RSP00020//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box6 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 68 cTCGAGTAtAAA 57 (Mism.= 2) TFBS AC: RSP00332//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: S1 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 2 107 ATGGTATT 114 (Mism.= 0) 131 ATGGTATT 138 (Mism.= 0) TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00078 Up.Conf.Int. 1 Found 1 33 GTTGGTTAATAAT 21 (Mism.= 0) TFBS AC: RSP00746//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 6 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00972 Up.Conf.Int. 1 Found 1 44 ATcGGGTTAcAA 55 (Mism.= 2) TFBS AC: RSP00748//OS: arabidopsis (Arabidopsis thaliana) /GENE: Pc/TFBS: PCbox1 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 95 GAtTGGTAACtA 84 (Mism.= 2) TFBS AC: RSP00953//OS: arabidopsis (Arabidopsis thaliana) /GENE: ATHB6/TFBS: ATHB6 BS /BF: ATHB6 Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 19 CAATTATTA 27 (Mism.= 0) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00854 Up.Conf.Int. 1 Found 1 96 CAAATGGAcA 105 (Mism.= 1) TFBS AC: RSP01477//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-1 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 179 TCGAGGGGCTAAAGTTGTCATTTGA 203 (Mism.= 0) TFBS AC: RSP01478//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00455 Up.Conf.Int. 1 Found 1 198 ATTTGAGCCaAAcCg 212 (Mism.= 3) TFBS AC: RSP01598//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 194 TGTCATTT 201 (Mism.= 0) TFBS AC: RSP01639//OS: tobacco (Nicotiana tabacum) /GENE: PR-Q; ACS2/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 191 AGTTGTCATT 200 (Mism.= 1) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 195 gTCATTTGAG 204 (Mism.= 1) TFBS AC: RSP02844//OS: tomato (Solanum lycopersicum) /GENE: GAME4/TFBS: P box 1 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 189 TAGCCCCTCG 180 (Mism.= 2) TFBS AC: RSP02916//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS3 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00980 Up.Conf.Int. 1 Found 1 124 TATgTACCAT 115 (Mism.= 1) Totally 15 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0281..AC:M64682..OS:Spinacia oleracea..GENE:GT3..PROD:nuclear-encoded plastid ribosomal protein L21..[ -200: +51]..CDS:+52..TSS:201 (+1)..NOTE: Promoter P2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.17 T - 0.24 C - 0.24 TFBS AC: RSP00332//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: S1 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 2 41 ATGGTATT 48 (Mism.= 0) 65 ATGGTATT 72 (Mism.= 0) TFBS AC: RSP00748//OS: arabidopsis (Arabidopsis thaliana) /GENE: Pc/TFBS: PCbox1 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00735 Up.Conf.Int. 1 Found 1 29 GAtTGGTAACtA 18 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00889 Up.Conf.Int. 1 Found 1 222 AGATAGAGA 214 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00900 Up.Conf.Int. 1 Found 3 228 TGAGAGAGA 220 (Mism.= 1) 226 AGAGAGATA 218 (Mism.= 1) 222 AGATAGAGA 214 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00910 Up.Conf.Int. 1 Found 1 228 tGAGAGAGA 220 (Mism.= 1) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 30 CAAATGGAcA 39 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00016 Up.Conf.Int. 1 Found 2 229 GtGAGAGAGAtAGAGAg 213 (Mism.= 3) 227 GAGAGAGAtAGAGAGgA 211 (Mism.= 2) TFBS AC: RSP01477//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-1 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 113 TCGAGGGGCTAAAGTTGTCATTTGA 137 (Mism.= 0) TFBS AC: RSP01478//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 132 ATTTGAGCCaAAcCg 146 (Mism.= 3) TFBS AC: RSP01598//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 128 TGTCATTT 135 (Mism.= 0) TFBS AC: RSP01639//OS: tobacco (Nicotiana tabacum) /GENE: PR-Q; ACS2/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 125 AGTTGTCATT 134 (Mism.= 1) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 129 gTCATTTGAG 138 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 3 211 tcCTCTCTaTCTCTCT 226 (Mism.= 3) 213 CTCTCTaTCTCTCTCa 228 (Mism.= 2) 215 CTCTaTCTCTCTCaCa 230 (Mism.= 3) TFBS AC: RSP02844//OS: tomato (Solanum lycopersicum) /GENE: GAME4/TFBS: P box 1 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 123 TAGCCCCtCg 114 (Mism.= 2) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 221 CTCTCTCAC 229 (Mism.= 0) TFBS AC: RSP02916//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS3 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 58 TATgTACCAT 49 (Mism.= 1) Totally 22 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0282..AC:AB073750..OS:Nicotiana tabacum..GENE:tbzF..PROD:bZIP-type transcription factor..[ -200: +51]..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.20 T - 0.45 C - 0.12 TFBS AC: RSP00663//OS: soybean (Glycine max) /GENE: VspB/TFBS: SRD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 55 CCCGAATAgATcG 67 (Mism.= 2) TFBS AC: RSP00750//OS: Catharanthus roseus /GENE: STR/TFBS: BN rev /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 114 TTATTGTtAAAT 125 (Mism.= 1) TFBS AC: RSP02125//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SOC1/TFBS: CArG1 (SVP) /BF: SVP Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 130 CTATTTTTGG 139 (Mism.= 0) TFBS AC: RSP02183//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp24/IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 90 GATTAtTTAAATAt 103 (Mism.= 2) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 130 CTATTTTTGG 139 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0283..AC:U64816..OS:Nicotiana tabacum..GENE:Sar8.2b..PROD:protein involved in systematic acquired resistance..[ -200: +51]..CDS:+43..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.34 C - 0.21 TFBS AC: RSP00541//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN B2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00018 Up.Conf.Int. 1 Found 1 172 TAAaTAGGGgAgAAaCATTA 191 (Mism.= 4) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00958 Up.Conf.Int. 1 Found 1 220 gTTtTAATTTTTT 208 (Mism.= 2) TFBS AC: RSP00960//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: MYB BS /BF: HvGAMYB Motifs on "+" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 69 CAACTAAC 76 (Mism.= 0) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00430 Up.Conf.Int. 1 Found 1 182 AGAAACAT 189 (Mism.= 0) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 68 CCAACTAACTCa 79 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00950 Up.Conf.Int. 1 Found 1 93 TGcgTGACTTTA 104 (Mism.= 2) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 143 AaAATGACaAAA 132 (Mism.= 2) TFBS AC: RSP02076//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS2 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 92 CGCCAAGG 85 (Mism.= 0) TFBS AC: RSP02117//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: AP-1 BS /BF: AP-1 Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 79 TGAGTTAG 72 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00763 Up.Conf.Int. 1 Found 1 178 CTATTTATAG 169 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00763 Up.Conf.Int. 1 Found 1 169 CTATAAATAG 178 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 178 CTATTTATAG 169 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0284..AC:AJ704770, AY466108..OS:Oryza sativa..GENE:Ltp1..PROD:lipid transfer protein..[ -200: +51]..CDS:+124..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.35 C - 0.16 TFBS AC: RSP00299//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-2 /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 215 ATTCCCGggAAT 226 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 226 ATTCCCGggAAT 215 (Mism.= 2) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 239 tcGATCGATGA 229 (Mism.= 2) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 15 gTTTTACACT 6 (Mism.= 1) TFBS AC: RSP02007//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 3 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 167 cCAAGTCAAAtG 156 (Mism.= 2) TFBS AC: RSP02776//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL6 BS /BF: NTL6 Motifs on "-" Strand: Mean Exp. Number 0.00949 Up.Conf.Int. 1 Found 1 97 TTTTCTTA 90 (Mism.= 0) TFBS AC: RSP02844//OS: tomato (Solanum lycopersicum) /GENE: GAME4/TFBS: P box 1 /BF: JRE-4 Motifs on "+" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 204 aAGCCCCCtA 213 (Mism.= 2) Totally 7 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0285..AC:U79156..OS:Arabidopsis thaliana..GENE:CCA1..PROD:Myb-related transcription factor..[ -200: +51]..CDS:+322..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.20 T - 0.33 C - 0.16 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 20 ACtCGTGGC 28 (Mism.= 1) TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 18 GaACtCGTGGC 28 (Mism.= 2) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "-" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 170 tTTAAtTTATTTATTT 155 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 1 125 TGACAtaTGGCA 136 (Mism.= 2) TFBS AC: RSP00572//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: 3'/AT-rich J1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00810 Up.Conf.Int. 1 Found 1 132 ATATGTCA 125 (Mism.= 0) TFBS AC: RSP00857//OS: maize (Zea mays) /GENE: H4C7/TFBS: NON /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00732 Up.Conf.Int. 1 Found 1 71 CCATCTtAAC 62 (Mism.= 1) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 56 GTTGATGTTA 65 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 1 136 TGCCAtaTGTCA 125 (Mism.= 2) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "-" Strand: Mean Exp. Number 0.00505 Up.Conf.Int. 1 Found 1 176 AAACTTTtTaATTT 163 (Mism.= 2) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00568 Up.Conf.Int. 1 Found 1 217 gAAATGGAGA 208 (Mism.= 1) TFBS AC: RSP01761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC13 (At1g32870)/TFBS: MRE (ANAC13) /BF: NSP1 Motifs on "-" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 50 CacAACCTTCTT 39 (Mism.= 2) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "-" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 233 GAgAcCAGAAGC 222 (Mism.= 2) TFBS AC: RSP02244//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCA1/TFBS: CCA1 BS (BOA) /BF: BOA Motifs on "+" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 59 GATGTTAAGATGGACAAGA 77 (Mism.= 0) TFBS AC: RSP02305//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS2 (W) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 121 ATgTTGACAtAT 132 (Mism.= 2) TFBS AC: RSP02923//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 28 GcCACGAGtT 19 (Mism.= 2) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0286..AC:AB012641..OS:Nicotiana sylvestris..GENE:Lhcb1*9..PROD:chlorophyll a/b-binding protein..[ -200: +51]..CDS:+69..TSS:201 (+1) # Alternative TSS(s): -2,+4,+6,+7,+8,+9 |Taxon: Dicot |Promote Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.30 C - 0.14 TFBS AC: RSP00307//OS: barley (Hordeum vulgare) /GENE: Chi26/TFBS: GCCAAG motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00999 Up.Conf.Int. 1 Found 1 64 GCCAAG 59 (Mism.= 0) TFBS AC: RSP00585//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: TSS NN /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00148 Up.Conf.Int. 1 Found 1 141 AGATAAGgACTTtGgT 156 (Mism.= 3) TFBS AC: RSP00742//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 2r /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00271 Up.Conf.Int. 1 Found 1 54 GCACCGTTAAAC 43 (Mism.= 0) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 215 AATATTcTTTCTG 227 (Mism.= 1) TFBS AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 74 CCATTATTTGG 64 (Mism.= 2) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 65 GGCCAAGT 58 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0287..AC:AB012641..OS:Nicotiana sylvestris..GENE:Lhcb1*8..PROD:chlorophyll a/b-binding protein..[ -200: +51]..CDS:+73..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.33 C - 0.14 TFBS AC: RSP00405//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adjb /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00430 Up.Conf.Int. 1 Found 1 159 TTTGGAGT 166 (Mism.= 0) TFBS AC: RSP00962//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GLM1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 54 TGAGTAG 48 (Mism.= 0) TFBS AC: RSP00988//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP I /BF: E2F/DP Motifs on "+" Strand: Mean Exp. Number 0.00194 Up.Conf.Int. 1 Found 1 199 CTCaaGCCAAAA 210 (Mism.= 2) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 71 CAAATGGAcA 80 (Mism.= 1) TFBS AC: RSP01529//OS: pea (Pisum sativum) /GENE: PsCHS3/TFBS: Box I /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 104 GtTAtCTTCCA 114 (Mism.= 2) TFBS AC: RSP01530//OS: pea (Pisum sativum) /GENE: PsCHS4/TFBS: Box I /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 104 GtTAtCTTCCA 114 (Mism.= 2) TFBS AC: RSP01531//OS: pea (Pisum sativum) /GENE: PsCHS5/TFBS: Box I /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 104 GtTAtCTTCCA 114 (Mism.= 2) TFBS AC: RSP01828//OS: purple false brome (Brachypodium distachyon) /GENE: BD ga2ox1/TFBS: KNOX BS (Os/Sb ga2ox1) /BF: KNOX Motifs on "+" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 1 68 TGACAAATGGAC 79 (Mism.= 2) TFBS AC: RSP02117//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: AP-1 BS /BF: AP-1 Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 7 TGAGTTAG 14 (Mism.= 0) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00430 Up.Conf.Int. 1 Found 1 185 CACCAAAT 178 (Mism.= 0) TFBS AC: RSP02875//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS2 /BF: GbWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 161 tGgAGTCATTTA 172 (Mism.= 2) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0288..AC:AB012641..OS:Nicotiana sylvestris..GENE:Lhcb1*3..PROD:chlorophyll a/b-binding protein..[ -200: +51]..CDS:+60..TSS:201 (+1) # Alternative TSS(s):-5,-1,+3,+4 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.31 C - 0.22 TFBS AC: RSP00009//OS: spinach (Spinacia oleracea) /GENE: NiR/TFBS: GATA /BF: NIT2 ZN-finger protein Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 175 TAcATA 170 --23-- 146 TATCTA 141 (Mism.= 1/ 0) TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 47 AATATTTTTAaT 36 (Mism.= 1) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 47 AATATTTTTAaT 36 (Mism.= 1) TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00948 Up.Conf.Int. 1 Found 1 47 AATATTTTTAat 36 (Mism.= 2) TFBS AC: RSP00324//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: cab-1B/TFBS: Ic box /BF: IBF-2a Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 131 TAGATATCACTaGATAAGgac 151 (Mism.= 4) TFBS AC: RSP00551//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: TSS BB1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 228 CTAgcAACCTCTTAc 242 (Mism.= 3) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 185 CAGAATAA 192 (Mism.= 0) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 47 AATATTTTTAaT 36 (Mism.= 1) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "-" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 217 cAAAGTTAGTTg 206 (Mism.= 2) TFBS AC: RSP00960//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: MYB BS /BF: HvGAMYB Motifs on "+" Strand: Mean Exp. Number 0.00773 Up.Conf.Int. 1 Found 1 206 CAACTAAC 213 (Mism.= 0) TFBS AC: RSP01711//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Others” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 231 CTAGTTTAAG 222 (Mism.= 0) TFBS AC: RSP02419//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 92-94 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 9 GATCCCAT 2 (Mism.= 0) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0289..AC:U30729 NM_115294..OS:Arabidopsis thaliana..GENE:APETALA3 (AP3)..PROD:floral homeotic protein..[ -200: +51]..CDS:+37..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.36 C - 0.22 TFBS AC: RSP00080//OS: arabidopsis (Arabidopsis thaliana) /GENE: STE2; other genes/TFBS: AGAMOUS MADS BS /BF: MADS domain of AGAMOUS DNA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 2 21 TTTaCATAAATGGAAA 36 (Mism.= 1) 94 TTTCCATTTTTaGTAA 109 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 2 109 TTACtAAAAATGGAAA 94 (Mism.= 1) 36 TTTCCATTTATGtAAA 21 (Mism.= 1) TFBS AC: RSP00085//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGL3-BE /BF: AGL3 Motifs on "+" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 2 21 TTTaCATAAATGGAAA 36 (Mism.= 1) 94 TTTCCATTTTTAGTAA 109 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 2 109 TTACTAAAAATGGAAA 94 (Mism.= 0) 36 TTTCCATTTATGtAAA 21 (Mism.= 1) TFBS AC: RSP00136//OS: arabidopsis (Arabidopsis thaliana) /GENE: AP3/TFBS: CArG1 /BF: AP3/PI Motifs on "+" Strand: Mean Exp. Number 0.00011 Up.Conf.Int. 1 Found 1 20 GTTTACATAAATGGAAAA 37 (Mism.= 0) TFBS AC: RSP00137//OS: arabidopsis (Arabidopsis thaliana) /GENE: AP3/TFBS: CArG2 /BF: AP3/PI Motifs on "+" Strand: Mean Exp. Number 0.00013 Up.Conf.Int. 1 Found 1 68 CTTACCTTTCATGGATTA 85 (Mism.= 0) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 220 AAcAAAGAGA 229 (Mism.= 1) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 118 CCACTTG 112 (Mism.= 0) TFBS AC: RSP00540//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 109 TTACtAAAAAtGG 97 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00514 Up.Conf.Int. 1 Found 1 153 AGAAAGAGA 145 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 149 AGAGAGAGA 141 (Mism.= 0) TFBS AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/TFBS: CLE-core /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 115 GTGGACCC 122 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 119 TCCACTTGa 111 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 97 CCATTTTTAG 106 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 4 136 CTCcaTCTCTCTCTtT 151 (Mism.= 3) 138 CcaTCTCTCTCTtTCT 153 (Mism.= 3) 140 aTCTCTCTCTtTCTaT 155 (Mism.= 3) 142 CTCTCTCTtTCTaTtT 157 (Mism.= 3) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 118 CCACTTG 112 (Mism.= 0) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 193 CACCAAAT 200 (Mism.= 0) Totally 24 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0290..AC:AJ250498..OS:Vicia faba..GENE:VfENOD5..PROD:broad bean early nidulin VfENOD5..[ -200: +51]..CDS:+71..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.32 C - 0.21 TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 96 TCATGCAA 103 (Mism.= 0) Totally 1 motifs of 1 different TFBSs have been found ____________________________________________________________ >PLPR0291..AC:L24546..OS:Volvox carteri..GENE:alpha2tub..PROD:alpha-2 tubulin ..[ -200: +51]..CDS:+140..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.24 T - 0.29 C - 0.21 TFBS AC: RSP00570//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich G1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 229 TAAATgAAAGTTtcG 215 (Mism.= 3) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 229 tAAATGAAAG 220 (Mism.= 1) TFBS AC: RSP01682//OS: pea (Pisum sativum) /GENE: FBPase/TFBS: PF1 BS /BF: PF1 Motifs on "+" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 102 ATgATTcAAAAGTTTg 117 (Mism.= 3) TFBS AC: RSP02407//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ASF1B/TFBS: E2F BS (-138) /BF: E2Fa/DPa; E2Fe; E2Ff Motifs on "-" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 86 aCTCGCGCC 78 (Mism.= 1) TFBS AC: RSP02550//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR1/TFBS: E0-1-1 /BF: CBNAC Motifs on "+" Strand: Mean Exp. Number 0.00493 Up.Conf.Int. 1 Found 1 124 ATGCTTAG 131 (Mism.= 0) TFBS AC: RSP02768//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC055 BS /BF: ANAC055 Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 222 AAGTTtCGTG 213 (Mism.= 1) TFBS AC: RSP02769//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC019 BS /BF: ANAC019 Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 222 AAGTTtCGTG 213 (Mism.= 1) TFBS AC: RSP02774//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC092 BS /BF: ANAC092 Motifs on "-" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 220 GTTtCGTGT 212 (Mism.= 1) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00503 Up.Conf.Int. 1 Found 1 17 AAAGGTCAAgaG 28 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0292..AC:L24547..OS:Volvox carteri..GENE:beta2tub..PROD:beta-2 tubulin ..[ -200: +51]..CDS:+120..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.21 T - 0.24 C - 0.29 TFBS AC: RSP00200//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 1 /BF: GmHdl56; GmHdl57; Motifs on "-" Strand: Mean Exp. Number 0.00709 Up.Conf.Int. 1 Found 1 178 CATTAAgTAG 169 (Mism.= 1) TFBS AC: RSP01276//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: Box III /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 71 GTACGTGG 64 (Mism.= 0) TFBS AC: RSP01846//OS: watermelon (Citrullus vulgaris) /GENE: AGPL1/TFBS: TCCAAAA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 113 TCCAAAA 107 (Mism.= 0) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00433 Up.Conf.Int. 1 Found 1 139 TcTTTACACT 148 (Mism.= 1) TFBS AC: RSP01988//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: 5A element W /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00784 Up.Conf.Int. 1 Found 1 112 CCAAAAA 106 (Mism.= 0) TFBS AC: RSP02531//OS: rice (Oryza sativa, japonica) /GENE: SLR1/TFBS: GTAC-motif 3 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 136 CCGTACAT 129 (Mism.= 0) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 99 cGGAATTTTT 108 (Mism.= 1) TFBS AC: RSP02701//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-1 /BF: HvHsfB2c Motifs on "-" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 108 AAAAATTCCgC 98 (Mism.= 1) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0293..AC:M88487..OS:Lycopersicon esculentum..GENE:LE-ACS4..PROD:1-aminocyclopropane-1-carboxylate synthase..[ -200: +51]..CDS:+73..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.09 T - 0.36 C - 0.24 TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 103 TTgCcTCATCGAA 91 (Mism.= 2) TFBS AC: RSP02186//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp29/V /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 212 TTTGtACTtCAAA 224 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 224 TTTGAAgTaCAAA 212 (Mism.= 2) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00830 Up.Conf.Int. 1 Found 1 63 GTCAAAAT 56 (Mism.= 0) Totally 4 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0294..AC:L46350..OS:Arabidopsis thaliana..GENE:FPS2..PROD:farnesyl diphosphate synthase..[ -200: +51]..CDS:+47..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.29 C - 0.22 TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 158 ACGTGACGC 166 (Mism.= 1) TFBS AC: RSP00066//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1b /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 158 ACGTGACGC 166 (Mism.= 1) TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 58 AAacATTTTTAAA 46 (Mism.= 2) TFBS AC: RSP00559//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 2'/box II J1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 25 TGTAATTgCAG 15 (Mism.= 1) TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 42 GTTGtTTAAaAAT 54 (Mism.= 2) TFBS AC: RSP00701//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (d) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00559 Up.Conf.Int. 1 Found 1 185 CTCGGATC 178 (Mism.= 1) TFBS AC: RSP00749//OS: Catharanthus roseus /GENE: STR/TFBS: BN /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00305 Up.Conf.Int. 1 Found 1 29 ATTTTGTAATTg 18 (Mism.= 1) TFBS AC: RSP00842//OS: maize (Zea mays) /GENE: H3C4/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 185 CTCGGATC 178 (Mism.= 0) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 155 GTCACGTGaC 164 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 164 GTCACGTGaC 155 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 155 GtCACGTGAc 164 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 164 GtCACGTGAc 155 (Mism.= 2) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 140 CTTTTTGTGG 131 (Mism.= 1) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 12 TTTCAAAG 5 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 155 GtCACGTGaC 164 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 164 GtCACGTGaC 155 (Mism.= 2) TFBS AC: RSP01892//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BCCP2/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 24 CAAAAttAGgGGTTT 38 (Mism.= 3) TFBS AC: RSP01893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BCCP2/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 24 CAAAAttAGgGGTTT 38 (Mism.= 3) TFBS AC: RSP01894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PKp-beta1/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 24 CAAAAtTAgGgGTTT 38 (Mism.= 3) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 155 GtCACGTGaC 164 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 164 GtCACGTGaC 155 (Mism.= 2) TFBS AC: RSP02035//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YUC8 (At4g28720)/TFBS: STY1 BS (YUC8) /BF: STY1 Motifs on "-" Strand: Mean Exp. Number 0.00347 Up.Conf.Int. 1 Found 1 45 CAACTCTAAaC 35 (Mism.= 1) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 164 gtCACGTGAC 155 (Mism.= 2) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00628 Up.Conf.Int. 1 Found 1 142 CCATTTAAAG 151 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 142 CCATTTAAAG 151 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 250 CCATTGATAG 241 (Mism.= 1) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 157 CACGTGAC 164 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00163 Up.Conf.Int. 1 Found 1 162 CACGTGAC 155 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 155 GtCACGTGAC 164 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 164 GtCACGTGAC 155 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 155 GtCACGTGAc 164 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 164 GtCACGTGAc 155 (Mism.= 2) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00792 Up.Conf.Int. 1 Found 1 155 gTCACGTGaC 164 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 164 gTCACGTGaC 155 (Mism.= 2) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 241 CTATCAATGG 250 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 151 CTTTAAATGG 142 (Mism.= 1) Totally 36 motifs of 26 different TFBSs have been found ____________________________________________________________ >PLPR0295..AC:U44838..OS:Glycine max..GENE:SbHRGP3..PROD:extensin..[ -200: +51]..CDS:+14..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.27 C - 0.22 TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 121 tCCACCTACC 130 (Mism.= 1) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 238 TAAGAGagGCC 228 (Mism.= 2) TFBS AC: RSP00253//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (r) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 14 AATCCGCG 21 (Mism.= 0) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 121 tCCACCTACC 130 (Mism.= 1) TFBS AC: RSP00433//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB84 BS /BF: AtMYB84 Motifs on "-" Strand: Mean Exp. Number 0.00357 Up.Conf.Int. 1 Found 1 133 CTTGGTAGGTGG 122 (Mism.= 2) TFBS AC: RSP00826//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: MRE-core (AtF3H) /BF: R2R3-type MYB Motifs on "+" Strand: Mean Exp. Number 0.00477 Up.Conf.Int. 1 Found 1 121 tCcACCTACCA 131 (Mism.= 2) TFBS AC: RSP01094//OS: pea (Pisum sativum) /GENE: GS2/TFBS: GT-1 box /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00226 Up.Conf.Int. 1 Found 1 140 TAgTTGGATAAA 151 (Mism.= 1) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 229 CCaTTGGAG 221 (Mism.= 1) TFBS AC: RSP01503//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 14 AATCCGCG 21 (Mism.= 0) TFBS AC: RSP01504//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 14 AATCCGCG 21 (Mism.= 0) TFBS AC: RSP01577//OS: potato, Solanum tuberosum /GENE: PAT21/TFBS: ICEr2 /BF: STK Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 89 cCTAAACAAT 80 (Mism.= 1) TFBS AC: RSP01578//OS: potato, Solanum tuberosum /GENE: PS20/TFBS: ICEr2 /BF: STK-related protein Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 89 cCTAAACAAT 80 (Mism.= 1) TFBS AC: RSP01579//OS: potato, Solanum tuberosum /GENE: B33/TFBS: ICEr2 /BF: STK-related protein Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 89 cCTAAACAAT 80 (Mism.= 1) TFBS AC: RSP01614//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: accD P-box /BF: GmDof4 Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 155 gTAAAAAAGTTgT 167 (Mism.= 2) TFBS AC: RSP02018//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBa /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 123 CACCTACC 130 (Mism.= 0) TFBS AC: RSP02020//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: MYB BS /BF: MYB Motifs on "-" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 130 GGTAGGTG 123 (Mism.= 0) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "+" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 29 ACCAACTTGgt 39 (Mism.= 2) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 1 231 CTCTCTtaCTCTCaCT 246 (Mism.= 3) TFBS AC: RSP02755//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS2 (HCT) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 123 CACCTACC 130 (Mism.= 0) TFBS AC: RSP02757//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS2 (CCoAOMT1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 123 CACCTACC 130 (Mism.= 0) TFBS AC: RSP02811//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: AC element (EgCCR) /BF: EgMYB2 Motifs on "-" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 130 GGTAGGTG 123 (Mism.= 0) TFBS AC: RSP02812//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 1 (EgCAD) /BF: EgMYB2 Motifs on "-" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 130 GGTAGGTG 123 (Mism.= 0) Totally 22 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0296..AC:U76610..OS:Solanum tuberosum..GENE:ci21A..PROD:ci21A, cold inducible protein..[ -200: +51]..CDS:+89..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.38 C - 0.14 TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "+" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 155 GCCACCTC 162 (Mism.= 0) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 155 GCCACcTCAt 164 (Mism.= 2) TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "+" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 160 CtCATGGCACa 170 (Mism.= 2) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 193 TGAATGAATG 202 (Mism.= 1) TFBS AC: RSP00847//OS: maize (Zea mays) /GENE: H3C4/TFBS: NON /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 156 CCACCTCATg 165 (Mism.= 1) TFBS AC: RSP00914//OS: maize (Zea mays) /GENE: b-32/TFBS: B2 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 135 GTTGATATGA 144 (Mism.= 2) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 135 GTTGATATGA 144 (Mism.= 2) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 135 GTTGATATGA 144 (Mism.= 1) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 5 TtAACCCTAA 14 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00783 Up.Conf.Int. 1 Found 1 5 TtAACCCTAA 14 (Mism.= 1) TFBS AC: RSP01305//OS: tobacco (Nicotiana tabacum) /GENE: Thio h2/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00640 Up.Conf.Int. 1 Found 1 5 TtaACCCTAA 14 (Mism.= 2) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00631 Up.Conf.Int. 1 Found 1 39 TTCACTCATTT 49 (Mism.= 1) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00849 Up.Conf.Int. 1 Found 1 97 TTTTTACACT 88 (Mism.= 0) TFBS AC: RSP02011//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_1) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 221 AGCACtTGaC 230 (Mism.= 2) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 230 gTCAaGTGCT 221 (Mism.= 2) TFBS AC: RSP02931//OS: maize (Zea mays) /GENE: GRMZM2G091201/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 163 TGagGTGGCA 154 (Mism.= 2) TFBS AC: RSP02932//OS: maize (Zea mays) /GENE: GRMZM2G097457/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 60 TGTCtTGTCA 69 (Mism.= 1) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0297..AC:M95172..OS:Hordeum vulgare..GENE:Kas12..PROD:beta-ketoacyl-acyl carrier protein (ACP) synthase I..[ -200: +51]..CDS:+169..TSS:201 (+1) # Alternative TSS(s): -3,-2,-1 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.09 T - 0.31 C - 0.29 TFBS AC: RSP00385//OS: carnation (Dianthus caryophillus) /GENE: GST1/TFBS: ERE-core /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 73 ATTTCAAA 66 (Mism.= 0) TFBS AC: RSP00706//OS: arabidopsis (Arabidopsis thaliana) /GENE: ARK3/TFBS: W-box /BF: trnascription factors of WRKY family Motifs on "-" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 36 aGTTGACTGAaA 25 (Mism.= 2) TFBS AC: RSP00846//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: GARE-DAE /BF: GAMyb and unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 161 TAACtGA 167 --32-- 200 CCAAtCcACA 209 (Mism.= 1/ 2) TFBS AC: RSP00893//OS: Solanum melongena /GENE: SmCP/TFBS: ERE 1 /BF: Dof factors Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 73 ATTTCAAA 66 (Mism.= 0) TFBS AC: RSP00988//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP I /BF: E2F/DP Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 218 CTCCCtCCAAAA 229 (Mism.= 1) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 10 GTTGATCTAA 19 (Mism.= 1) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00608 Up.Conf.Int. 1 Found 1 86 AGAAACAT 79 (Mism.= 0) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 231 TCCAtCCATCCA 242 (Mism.= 1) TFBS AC: RSP01127//OS: Petunia hybrida /GENE: Synthetic oligonucleotides/TFBS: ZPT2-2 BS 1 /BF: ZPT2-2 Motifs on "+" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 155 CAGT 158 --10-- 169 AGCG 172 (Mism.= 0/ 0) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 18 AATATTTTTTCaG 30 (Mism.= 1) TFBS AC: RSP01599//OS: spinach (Spinacia oleracea) /GENE: RPS1/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00586 Up.Conf.Int. 1 Found 1 72 TTTCAAAT 65 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 225 GGAGGGAGAG 216 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0298..AC:U17436..OS:Medicago sativa..GENE:IFR..PROD:isoflavone reductase..[ -200: +51]..CDS:+93..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.28 C - 0.17 TFBS AC: RSP00383//OS: parsley (Petroselinum crispum) /GENE: WRKY1/TFBS: WA /BF: WRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00949 Up.Conf.Int. 1 Found 1 62 GGTCAAA 56 (Mism.= 0) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 149 CACCaACTTC 140 (Mism.= 1) TFBS AC: RSP01057//OS: arabidopsis (Arabidopsis thaliana) /GENE: rbcS-1a/TFBS: GT-3a Box III /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 226 taCGTTACCAA 216 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00800 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01714//OS: Arabidopsis (Arabidopsis thaliana) /GENE: REH1/PIN3 (At1g70940)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00258 Up.Conf.Int. 1 Found 1 218 GGTaACGTATTc 229 (Mism.= 2) TFBS AC: RSP01958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MT2B/TFBS: EEr /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 166 CTATAAATATC 176 (Mism.= 0) TFBS AC: RSP01959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MT2B/TFBS: C-region /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 160 TTTgtCCTATAAATATC 176 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 240 TTTCTTGTTTT 230 (Mism.= 0) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 240 TTTCTTGTTTT 230 (Mism.= 1) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 240 TTTCTTGTTTT 230 (Mism.= 1) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00542 Up.Conf.Int. 1 Found 1 240 TTTCTTGTTTT 230 (Mism.= 1) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00837 Up.Conf.Int. 1 Found 1 73 GCAGCC 68 (Mism.= 0) TFBS AC: RSP02328//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 2 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00904 Up.Conf.Int. 1 Found 1 148 ACCAACT 142 (Mism.= 0) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 61 GTCAAAAT 54 (Mism.= 0) TFBS AC: RSP02590//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00904 Up.Conf.Int. 1 Found 1 148 ACCAACT 142 (Mism.= 0) TFBS AC: RSP02917//OS: pear (Pyrus bretschneideri) /GENE: PbANR/TFBS: PbMYB9 BS /BF: PbMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 143 GTTGGTG 149 (Mism.= 0) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0299..AC:U16727..OS:Medicago truncatula..GENE:rip1..PROD:Rhizobium-induced peroxidase..[ -200: +51]..CDS:+29..TSS:201 (+1) # Alternative TSS(s):-4 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.29 C - 0.18 TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 123 AATATTTTTATg 112 (Mism.= 1) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 123 AATATTTTTATg 112 (Mism.= 1) TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00448 Up.Conf.Int. 1 Found 1 123 AATATTTTTATg 112 (Mism.= 1) TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "-" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 13 TcCACTTTTGG 3 (Mism.= 1) TFBS AC: RSP00559//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 2'/box II J1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 29 TGTAATTTCAG 19 (Mism.= 0) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 13 TCCACTTtT 5 (Mism.= 1) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 3 CCAAAAgTGG 12 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 12 CCACTTTTGG 3 (Mism.= 1) TFBS AC: RSP02290//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: AE-box /BF: 52-kDa (b3-domain) TF Motifs on "+" Strand: Mean Exp. Number 0.00559 Up.Conf.Int. 1 Found 1 214 AAGAAACAT 222 (Mism.= 0) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 38 TTTTGTCC 31 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 38 TTTTGTCC 31 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0300..AC:L04680..OS:Nicotiana tabacum..GENE:EAS..PROD:5-epi-aristolochene synthase..[ -200: +51]..CDS:+42..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.18 T - 0.39 C - 0.14 TFBS AC: RSP01711//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Others” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00800 Up.Conf.Int. 1 Found 1 73 CTAGTATTAG 64 (Mism.= 0) TFBS AC: RSP02119//OS: fungus Trichoderma harzianum /GENE: ech-42/TFBS: Cre1 BS2 /BF: Cre1 Motifs on "+" Strand: Mean Exp. Number 0.00920 Up.Conf.Int. 1 Found 1 13 TCTGGGGg 20 (Mism.= 1) TFBS AC: RSP02538//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN1/TFBS: WUS BS 2 (KAN1) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 63 ACTAATAC 70 (Mism.= 0) Totally 3 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0301..AC:X73535..OS:Arabidopsis thaliana..GENE:hemC..PROD:hydroxymethylbilane synthase..[ -200: +51]..CDS:+104..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.31 C - 0.22 TFBS AC: RSP00664//OS: pea, Pisum sativum /GENE: psl/TFBS: C-box /BF: Opaque-2 (O2); TGA1 Motifs on "+" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 106 ATGAGTCAT 114 (Mism.= 0) TFBS AC: RSP00687//OS: barley (Hordeum vulgare) /GENE: C-hordein/TFBS: N-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 106 ATGAGTCAT 114 (Mism.= 0) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00680 Up.Conf.Int. 1 Found 1 205 CAAATGGAGt 196 (Mism.= 1) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 1 235 aAAATGAAGA 226 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 45 CTTTTaTTGG 36 (Mism.= 1) TFBS AC: RSP01278//OS: Tobacco; Nicotiana tabacum /GENE: Synthetic oligonucleotides/TFBS: B consensus /BF: AP1/GCN4 Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 106 ATGAGTCAT 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 114 ATGACTCAT 106 (Mism.= 0) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 32 CGGCCCA 38 (Mism.= 0) Totally 8 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0302..AC:X58542..OS:Cucumis sativus..GENE:hpr-A..PROD:NADH-dependent hydroxypyruvate reductase..[ -200: +51]..CDS:+62..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.23 C - 0.25 TFBS AC: RSP00397//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00710 Up.Conf.Int. 1 Found 1 217 AGTGGtGG 224 (Mism.= 1) TFBS AC: RSP00646//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C1-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 183 GAAATgAAAAATGc 196 (Mism.= 2) TFBS AC: RSP01631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZCP4/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 249 CTTGAAAGCTT 239 (Mism.= 2) TFBS AC: RSP01632//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At5g51890/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 249 CTTGAAAGCTT 239 (Mism.= 2) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 249 CTTGAAAGCTT 239 (Mism.= 2) TFBS AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Quant. Seq.) /BF: AT-Hook Proteins Motifs on "-" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 115 CAATAgAATATT 104 (Mism.= 1) TFBS AC: RSP01767//OS: maize (Zea mays) /GENE: Bz1/TFBS: AT-rich element /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 172 TAAAAATTT 164 (Mism.= 0) TFBS AC: RSP02007//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 3 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 80 ACAAGTCAAcaG 91 (Mism.= 2) TFBS AC: RSP02140//OS: maize (Zea mays) /GENE: F5H/TFBS: MBS-1 /BF: ZmMYB31 Motifs on "-" Strand: Mean Exp. Number 0.00513 Up.Conf.Int. 1 Found 1 225 TCCACC 220 (Mism.= 0) TFBS AC: RSP02415//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 45-48 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 218 GtGGTGG 224 (Mism.= 1) TFBS AC: RSP02666//OS: Oryza sativa /GENE: ClpB-cyt/Hsp100/TFBS: HSE /BF: OsHsfA2c; OsHsfB4b Motifs on "+" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 103 GAATATTC 110 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 110 GAATATTC 103 (Mism.= 0) TFBS AC: RSP02744//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmPHD BS /BF: GmPHD1; GmPHD2; GmPHD3; GmPHD4; GmPHD5 Motifs on "+" Strand: Mean Exp. Number 0.00513 Up.Conf.Int. 1 Found 1 221 GTGGAG 226 (Mism.= 0) TFBS AC: RSP02859//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: CArG-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 250 CCTTgAAAGC 241 (Mism.= 1) TFBS AC: RSP02877//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtJAZ1/TFBS: GbWRKY1 BS /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 95 TTGACTGTTGACT 83 (Mism.= 0) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00062 Up.Conf.Int. 1 Found 1 227 TCTCCaCCAC 218 (Mism.= 1) Totally 16 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0303..AC:U12171..OS:Oryza sativa..GENE:RTS2..PROD:anther specific.. [-350:+50].. ..CDS: +78..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.23 C - 0.30 TFBS AC: RSP00020//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box6 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 162 GTCGcGTAtAAA 173 (Mism.= 2) TFBS AC: RSP00314//OS: arabidopsis (Arabidopsis thaliana) /GENE: GA3/TFBS: rbe /BF: RSG, a bZIP transcriptional activator; Motifs on "+" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 9 TCCAAtTTGGA 19 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00108 Up.Conf.Int. 1 Found 1 19 TCCAAaTTGGA 9 (Mism.= 1) TFBS AC: RSP00444//OS: maize /GENE: cyPPDK1/TFBS: box d /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 224 gAaAAAGAAAGAAA 237 (Mism.= 2) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 235 TcTTtCTTTTTCTaTC 220 (Mism.= 3) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 229 AGAAAGAAA 237 (Mism.= 0) TFBS AC: RSP01136//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: TGTCACA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00849 Up.Conf.Int. 1 Found 1 84 TGTCACA 78 (Mism.= 0) TFBS AC: RSP01862//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE3 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 90 cCCTAGTGTC 81 (Mism.= 1) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 2 225 AAAAAGAAA 233 (Mism.= 0) 240 AAAAAGAAA 248 (Mism.= 0) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "+" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 225 aaAAAGAAAGAA 236 (Mism.= 2) TFBS AC: RSP02408//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS1 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 2 153 CTCTGCAT 160 (Mism.= 0) 197 CTCTGCAT 204 (Mism.= 0) TFBS AC: RSP02416//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 88-91 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 130 AGAGATGC 123 (Mism.= 0) Totally 14 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0304..AC:X00043..OS:Triticum aestivum..GENE: H4..PROD:histone H4..[ -200: +51] ..CDS: +68 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.16 T - 0.15 C - 0.49 TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00620 Up.Conf.Int. 1 Found 1 140 ACaCGCCTCCTC 151 (Mism.= 1) TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 70 TGACGTGGC 62 (Mism.= 0) TFBS AC: RSP00208//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,A /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00666 Up.Conf.Int. 1 Found 1 62 GCCACGTCAcCg 73 (Mism.= 2) TFBS AC: RSP00263//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Non /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 125 CATCCAACG 133 (Mism.= 0) TFBS AC: RSP00278//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: type I element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 63 CCACGTCACCGATCCGCG 80 (Mism.= 1) TFBS AC: RSP00701//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (d) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 80 CgCGGATC 73 (Mism.= 1) TFBS AC: RSP00839//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: OCT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00349 Up.Conf.Int. 1 Found 1 80 CGCGGATC 73 (Mism.= 0) TFBS AC: RSP00845//OS: maize (Zea mays) /GENE: H3C4/TFBS: OCT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00349 Up.Conf.Int. 1 Found 1 80 CGCGGATC 73 (Mism.= 0) TFBS AC: RSP00854//OS: maize (Zea mays) /GENE: H4C7/TFBS: OCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 77 CGCGGCATC 85 (Mism.= 0) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "-" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 173 TCTTAAAGGGG 163 (Mism.= 0) TFBS AC: RSP00877//OS: arabidopsis (Arabidopsis thaliana) /GENE: MCM3/TFBS: Site 2 E2F (D2) /BF: AtE2F Motifs on "+" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 34 CCCGCCAAA 42 (Mism.= 0) TFBS AC: RSP01106//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rHex /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00929 Up.Conf.Int. 1 Found 1 60 cgGCCACGTCA 70 (Mism.= 2) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "-" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 72 GGTGACGTGGC 62 (Mism.= 0) TFBS AC: RSP01315//OS: wheat (Triticum aestivum) /GENE: H3 (TH012)/TFBS: Type I element /BF: Nuclear factors of HBP-1a and HBP-1b family Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 63 CCACGTCACCgATCCGCG 80 (Mism.= 1) TFBS AC: RSP01316//OS: alfalfa (Medicago sativa) /GENE: H3 (ALH3-1.1)/TFBS: Type I element /BF: Nuclear factors of HBP-1a and HBP-1b family Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 63 CCACGTCAcCGATCCGCG 80 (Mism.= 1) TFBS AC: RSP01317//OS: parsley (Petroselinum crispum) /GENE: H3 (PcH3-7/PcH3-16/PcH3-20)/TFBS: Type I element /BF: Nuclear factors of HBP-1a and HBP-1b family Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 63 CCACGTCACCGATCCGCG 80 (Mism.= 0) TFBS AC: RSP01318//OS: wheat (Triticum aestivum) /GENE: H4 (TH011/TH041)/TFBS: Type I element /BF: Nuclear factors of HBP-1a and HBP-1b family Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 63 CCACGTCACCGATCCGCG 80 (Mism.= 0) TFBS AC: RSP01319//OS: maize (Zea mays) /GENE: H4 (C7/C13)/TFBS: Type I element /BF: Nuclear factors of HBP-1a and HBP-1b family Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 63 CCACGTCAcCGATCCGCG 80 (Mism.= 1) TFBS AC: RSP01511//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: OLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00349 Up.Conf.Int. 1 Found 1 78 GCGGCATC 85 (Mism.= 0) TFBS AC: RSP01512//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: OLS /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00349 Up.Conf.Int. 1 Found 1 78 GCGGCATC 85 (Mism.= 0) TFBS AC: RSP01563//OS: wheat (Triticum aestivum) /GENE: H3 (TH012)/TFBS: HBP-2 BS /BF: WZF-1 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 125 CATCCAACG 133 (Mism.= 0) TFBS AC: RSP01729//OS: Arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 72 GGTGACGTGGCC 61 (Mism.= 1) TFBS AC: RSP01887//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS1 /BF: VSF-1 Motifs on "-" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 136 tgCCGTTGGATGcGG 122 (Mism.= 3) TFBS AC: RSP01922//OS: snapdragon (Antirrhinum majus) /GENE: synthetic oligonucleotides/TFBS: bZIP910/bZIP911 BS 1 /BF: bZIP910; bZIP911 Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 72 GGTGACGTGGCC 61 (Mism.= 0) TFBS AC: RSP01924//OS: snapdragon (Antirrhinum majus) /GENE: synthetic oligonucleotides/TFBS: bZIP911 BS 2 /BF: bZIP911 Motifs on "-" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 72 GGTGACGTGGCC 61 (Mism.= 2) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 71 gTGACGTGGC 62 (Mism.= 1) TFBS AC: RSP02152//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: Hex element with ACGTCA-core motif /BF: TBZ17 Motifs on "+" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 59 TCGGCCACGTCACCgATCCG 78 (Mism.= 1) TFBS AC: RSP02387//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: Oct(II) /BF: NtWLIM2 Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 84 ATgcCGCGGATC 73 (Mism.= 2) TFBS AC: RSP02416//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 88-91 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 88 AGAGATGC 81 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 62 GCCACGTCAcC 72 (Mism.= 1) TFBS AC: RSP02979//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/1 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 175 CgTcTTAAAG 166 (Mism.= 2) Totally 31 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0305..AC:J05486..OS:Avena sativa..GENE: avenin ..PROD:seed storage protein ..[ -200: +51] ..CDS: +74 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.16 T - 0.21 C - 0.22 TFBS AC: RSP00489//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 66 TACCTACaAA 57 (Mism.= 1) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 126 GgAAAAGCAAAtGCAA 141 (Mism.= 2) TFBS AC: RSP01012//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 1 (AC-I) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 65 ACCTACA 59 (Mism.= 0) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 47 tGGATCGATcA 37 (Mism.= 2) TFBS AC: RSP01190//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: C-box /BF: C factor Motifs on "-" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 191 CCATGGTGCA 182 (Mism.= 2) TFBS AC: RSP02014//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_1) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 62 TACAAATGtT 53 (Mism.= 1) TFBS AC: RSP02916//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS3 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 171 TATCTgCCAT 162 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0306..AC:U92460.1..OS:Arabidopsis thaliana..GENE:OPR1..PROD:12-oxophytodienoate reductase..[ -200: +51] ..CDS: +71..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.28 C - 0.21 TFBS AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: Z element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 86 aCACATACGT 95 (Mism.= 1) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 67 CCACTTG 61 (Mism.= 0) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 59 tCCAAGTGGA 68 (Mism.= 1) TFBS AC: RSP00969//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: Aux28B2 /BF: STGA1 Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 27 TTGACGACAT 18 (Mism.= 2) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 40 GATGACGTAT 31 (Mism.= 1) TFBS AC: RSP01138//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region C /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 114 GACGTGGTCGTC 103 (Mism.= 2) TFBS AC: RSP01659//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/A-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 40 gATGACGTATTc 29 (Mism.= 2) TFBS AC: RSP01664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARR9 (At3g57040)/TFBS: C-box (2) /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 40 GATGACGTatTC 29 (Mism.= 2) TFBS AC: RSP01665//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF12 (At1g28360)/TFBS: C/A-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 40 GaTGACGTAtTC 29 (Mism.= 2) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 68 TCCACTTGG 60 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 67 CCACTTG 61 (Mism.= 0) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 193 TaTCCTCCAC 202 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0307..AC:U40708.1..OS:Oryza sativa (indica cultivar-group)..GENE:Osgrp-2..PROD:glycine-rich cell wall protein..[ -200: +51] ..CDS: +47..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.22 C - 0.30 TFBS AC: RSP00306//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIb /BF: PCF1;, PCF2; Motifs on "+" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 111 TtTtGGACCATG 122 (Mism.= 2) TFBS AC: RSP00943//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box III /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 58 TCATTTCACAc 68 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 168 CTATAAATA 176 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00074 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00074 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01596//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box III /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 68 gTGTGAAATGA 58 (Mism.= 1) TFBS AC: RSP01846//OS: watermelon (Citrullus vulgaris) /GENE: AGPL1/TFBS: TCCAAAA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 117 TCCAAAA 111 (Mism.= 0) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00680 Up.Conf.Int. 1 Found 1 35 CTCTCCAT 42 (Mism.= 0) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 107 CTAGTTTTGG 116 (Mism.= 1) TFBS AC: RSP02690//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: TCTAA box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00391 Up.Conf.Int. 1 Found 1 97 TCTAACGT 104 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00837 Up.Conf.Int. 1 Found 1 169 TATAAATA 176 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0308..AC:AJ002974.1..OS:Craterostigma plantagineum..GENE:CDet11-24..PROD:drought, salt and ABA response..[ -200: +51] ..CDS: +73..TSS:201 (+1)...|Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.18 T - 0.27 C - 0.30 TFBS AC: RSP00049//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 73 CaCACGTGTC 64 (Mism.= 1) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 142 GaCACTTGTC 151 (Mism.= 1) TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 87 TGACGTGTC 95 (Mism.= 1) TFBS AC: RSP00208//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,A /BF: MAT2 (ROM2) Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 95 GaCACGTCAGCc 84 (Mism.= 2) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 95 GaCACGTCAG 86 (Mism.= 1) TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 13 GCCACGTCcCtC 24 (Mism.= 2) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 1 222 GAAtAAGaAAAAaCAA 237 (Mism.= 3) TFBS AC: RSP00558//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 86 gCCTATTCgTTAG 74 (Mism.= 2) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 13 GCCACGTCCc 22 (Mism.= 1) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 211 AGAAAGGAA 203 (Mism.= 0) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 85 GCTGACGTGT 94 (Mism.= 2) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00946 Up.Conf.Int. 1 Found 1 85 GcTGACGTGt 94 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 73 caCACGTGTC 64 (Mism.= 2) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 85 GCTGACGTGT 94 (Mism.= 1) TFBS AC: RSP01009//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB1A/DREB2A BS /BF: DREB1A; DREB2A Motifs on "-" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 50 TACCGACAc 42 (Mism.= 1) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 113 AGAAACAT 106 (Mism.= 0) TFBS AC: RSP01085//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE2 /BF: HaDREB2 Motifs on "-" Strand: Mean Exp. Number 0.00651 Up.Conf.Int. 1 Found 1 49 ACCGACACC 41 (Mism.= 1) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 73 CACACGTGtC 64 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 65 ACACGTGT 72 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 72 ACACGTGT 65 (Mism.= 0) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 87 TGACGTGT 94 (Mism.= 0) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "+" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 85 GcTGACGTGtC 95 (Mism.= 2) TFBS AC: RSP01610//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 50 TACCGACAc 42 (Mism.= 1) TFBS AC: RSP01658//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 85 GcTGACGTGTCc 96 (Mism.= 2) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00558 Up.Conf.Int. 1 Found 1 151 GaCAAGTGTC 142 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 64 GACACGTGTG 73 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 73 CACACGTGTC 64 (Mism.= 1) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 86 CTGACGTGtC 95 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 73 caCACGTGTC 64 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 64 GACACGTG 71 (Mism.= 0) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 1 73 CACACGTgTC 64 (Mism.= 1) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 65 ACACGTGT 72 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 72 ACACGTGT 65 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 64 GACACGTGTG 73 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 73 CACACGTGTC 64 (Mism.= 0) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 72 ACACGTGTcT 63 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 64 GACACGTGTG 73 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 64 GACACGTGTg 73 (Mism.= 1) TFBS AC: RSP02532//OS: rice (Oryza sativa, japonica) /GENE: PIN1b/TFBS: GTAC-motif /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00491 Up.Conf.Int. 1 Found 1 173 TCGTACAT 180 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 71 CACGTGTC 64 (Mism.= 0) TFBS AC: RSP02677//OS: wild tomato (Solanum habrochaites) /GENE: Synthetic oligonucleotides/TFBS: CRT/DRE /BF: ShCBF1 Motifs on "-" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 50 TACCGACAc 42 (Mism.= 1) TFBS AC: RSP02776//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL6 BS /BF: NTL6 Motifs on "-" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 232 TTTTCTTA 225 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 95 GaCACGTCAGC 85 (Mism.= 1) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 73 CAcACGTGTC 64 (Mism.= 1) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00794 Up.Conf.Int. 1 Found 1 73 CaCACGTGtC 64 (Mism.= 2) Totally 45 motifs of 42 different TFBSs have been found ____________________________________________________________ >PLPR0309..AC:AF484252.1..OS:Nicotiana tabacum..GENE:COMT II..PROD:caffeic acid O-methyltransferase II..[ -200: +51] ..CDS: +90..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.48 G - 0.10 T - 0.20 C - 0.22 TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "+" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 128 ATTaTGACAAtT 139 (Mism.= 2) TFBS AC: RSP02959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box A /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 180 CTCAAcTGTa 189 (Mism.= 2) Totally 2 motifs of 2 different TFBSs have been found ____________________________________________________________ >PLPR0310..AC:AY267899.1..OS:Nicotiana plumbaginifolia..GENE:ABC1..PROD:plasma membrane ATP-binding cassette (ABC) transporter..[ -200: +51] ..CDS: +110..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.09 T - 0.34 C - 0.22 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP00203//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.1 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 26 TATACGTCAa 35 (Mism.= 1) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 140 GGCGGC 135 (Mism.= 0) TFBS AC: RSP00696//OS: Brassica oleracea /GENE: SLG13/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 123 aACAATGcTATAG 135 (Mism.= 2) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP01657//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MP/ARF5 (At1g19850)/TFBS: C/A-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00286 Up.Conf.Int. 1 Found 1 36 TTTGACGTAtAC 25 (Mism.= 1) TFBS AC: RSP01660//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CKX5/6 (At1g75450)/TFBS: C/A-box /BF: STF1/HY5 BS (cons) Motifs on "-" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 36 tTTGACGTATAC 25 (Mism.= 1) TFBS AC: RSP01741//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY11) BS3 /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 74 TTATTGACCtAAT 62 (Mism.= 1) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP01979//OS: Arabidopsis (Arabidopsis thaliana) /GENE: EBF2/TFBS: EIN3 BS2 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 98 ATGTATAC 105 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP02305//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS2 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00684 Up.Conf.Int. 1 Found 1 61 ATtTTGACgAAT 50 (Mism.= 2) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00684 Up.Conf.Int. 1 Found 1 61 ATTtTGACgAAT 50 (Mism.= 2) TFBS AC: RSP02331//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 5 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00931 Up.Conf.Int. 1 Found 1 68 ACCTAAT 62 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 134 AGCCGCC 140 (Mism.= 0) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "+" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 54 GTCAAAAT 61 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "+" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 133 tAGCCGCCcC 142 (Mism.= 2) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "+" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 135 GCCGCC 140 (Mism.= 0) TFBS AC: RSP02955//OS: maize (Zea mays) /GENE: FIP1/TFBS: WRI1 BS /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 134 aGCCGCCCC 142 (Mism.= 1) Totally 33 motifs of 33 different TFBSs have been found ____________________________________________________________ >PLPR0311..AC:X14172.1..OS:Oryza sativa (indica cultivar groupp)..GENE:OSPHY18..PROD:phytochrome..[ -200: +51] ..CDS:+2753..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.16 G - 0.29 T - 0.20 C - 0.36 TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 12 GACACCTCACCT 23 (Mism.= 2) TFBS AC: RSP00211//OS: parsley, Petroselinum crispum /GENE: pr2/TFBS: HD-BS /BF: HD protein Motifs on "+" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 168 CTAtTTaTTTA 178 (Mism.= 2) TFBS AC: RSP00253//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (r) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 5 AATCCGCG 12 (Mism.= 0) TFBS AC: RSP00337//OS: soybean (Glycine max) /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/TFBS: SEF1 BS /BF: SEF1 Motifs on "+" Strand: Mean Exp. Number 0.00610 Up.Conf.Int. 1 Found 2 168 cTATTTATT 176 (Mism.= 1) 172 tTATTTATT 180 (Mism.= 1) TFBS AC: RSP00709//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: I-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 169 TAtTTATTT 177 (Mism.= 1) TFBS AC: RSP00948//OS: rice (Oryza sativa), Oryza sativa /GENE: PHYA/TFBS: GT3-bx /BF: GT-2 Motifs on "+" Strand: Mean Exp. Number 0.00288 Up.Conf.Int. 1 Found 1 1 GGTAAAT 7 (Mism.= 0) TFBS AC: RSP01093//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 116 cCTAAGCAcAG 126 (Mism.= 2) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 170 ATTTATtTATTcA 182 (Mism.= 2) TFBS AC: RSP01503//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 5 AATCCGCG 12 (Mism.= 0) TFBS AC: RSP01504//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 5 AATCCGCG 12 (Mism.= 0) TFBS AC: RSP01982//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 160 TGTGATG 154 (Mism.= 0) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 170 ATTTaTTTAT 179 (Mism.= 1) TFBS AC: RSP02387//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: Oct(II) /BF: NtWLIM2 Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 66 ATCACcCcGATC 55 (Mism.= 2) Totally 14 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0312..AC:Y12636.1 X92510.1..OS:Arabidopsis thaliana..GENE:AOS..PROD:allene oxide synthase..[ -200: +51] ..CDS: +78..TSS:201 (+1) # Alternative TSS(s): +4 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.33 C - 0.22 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 35 gCACGTGGC 43 (Mism.= 1) TFBS AC: RSP00058//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: CE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 64 gGCCACCGG 56 (Mism.= 1) TFBS AC: RSP00064//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00107 Up.Conf.Int. 1 Found 1 34 AGcACGTGGC 43 (Mism.= 1) TFBS AC: RSP00067//OS: tobacco (Nicotiana tabacum) /GENE: CEVI1/TFBS: DBP1 BS /BF: DBP1 Motifs on "+" Strand: Mean Exp. Number 0.00469 Up.Conf.Int. 1 Found 1 156 TAtTATTTtCCTTT 169 (Mism.= 2) TFBS AC: RSP00075//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: Iwt /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 35 GcACGTGGCt 44 (Mism.= 2) TFBS AC: RSP00128//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 147 TGAAAAtAGTGAaTTt 132 (Mism.= 3) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 36 CACGTGGC 43 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00684 Up.Conf.Int. 1 Found 1 34 agCACGTGGC 43 (Mism.= 2) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 1 43 GCCACGTGct 34 (Mism.= 2) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 36 CACGTGGC 43 (Mism.= 0) TFBS AC: RSP00819//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: ACE-core (AtF3H) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 43 GCCACGTgcT 34 (Mism.= 2) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 43 GCCACGTgCT 34 (Mism.= 1) TFBS AC: RSP00889//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: GC motif /BF: bZIP proteins Motifs on "-" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 99 CCACGCA 93 (Mism.= 0) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 43 GcCACGTGCt 34 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 43 GcCACGTGcT 34 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 1 37 ACGTGGC 43 (Mism.= 0) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "-" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 62 CCACCGGC 55 (Mism.= 1) TFBS AC: RSP01205//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 110 CCTTTTTCAG 101 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 35 gCACGTGG 42 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00786 Up.Conf.Int. 1 Found 1 42 CCACGTGc 35 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 35 gCACGTGG 42 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 1 36 CACGTGGC 43 (Mism.= 0) TFBS AC: RSP01612//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-2 /BF: GmDof4 Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 222 TCTtTCTTTATAAc 235 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 43 GCCACGTGct 34 (Mism.= 2) TFBS AC: RSP01825//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI5/TFBS: CE1-like element /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00732 Up.Conf.Int. 1 Found 1 63 GCCACCG 57 (Mism.= 0) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 125 GGCCACT 131 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00385 Up.Conf.Int. 1 Found 1 35 gCACGTGGCt 44 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 34 AgCACGTGgC 43 (Mism.= 2) TFBS AC: RSP01995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CE1 /BF: RAP2.6 Motifs on "-" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 64 GGCCACCGG 56 (Mism.= 1) TFBS AC: RSP02008//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 4 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00220 Up.Conf.Int. 1 Found 1 25 AAGaGTCAAAgC 36 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00580 Up.Conf.Int. 1 Found 1 34 AgCACGTGgC 43 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 34 agCACGTGGC 43 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 35 gCACGTGG 42 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 42 CCACGTGc 35 (Mism.= 1) TFBS AC: RSP02220//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE3 (FHL) /BF: Motifs on "+" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 35 GCACGTGg 42 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 42 cCACGTGC 35 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00335 Up.Conf.Int. 1 Found 1 35 GCACGTGG 42 (Mism.= 0) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 35 GCACGTGg 42 (Mism.= 1) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "-" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 232 aTAAAGAAAGAA 221 (Mism.= 1) TFBS AC: RSP02415//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 45-48 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00620 Up.Conf.Int. 1 Found 1 56 cCGGTGG 62 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 43 GCCACGTGcT 34 (Mism.= 1) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 42 CCACGT 37 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 42 CCACGT 37 (Mism.= 0) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 36 CACGTGGc 43 (Mism.= 1) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 34 aGCACGTgGC 43 (Mism.= 2) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 37 ACGTGG 42 (Mism.= 0) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 43 gcCACGTGCT 34 (Mism.= 2) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 1 37 ACGTGGC 43 (Mism.= 0) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "+" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 35 GCACGTGGct 44 (Mism.= 2) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "+" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 35 GCACGTGGct 44 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 34 AgCACGTGGC 43 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 43 GcCACGTGcT 34 (Mism.= 2) TFBS AC: RSP02963//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box E /BF: BZR1 Motifs on "-" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 43 GCCAcgTGCT 34 (Mism.= 2) Totally 53 motifs of 50 different TFBSs have been found ____________________________________________________________ >PLPR0313..AC:AJ132001.1..OS:Craterostigma plantagineum..GENE:Ss1..PROD:sucrose synthase 1..[ -200: +51] ..CDS: +161..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.15 T - 0.33 C - 0.19 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 26 ACACGTcGC 34 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00991 Up.Conf.Int. 1 Found 1 25 tACACGTcGC 34 (Mism.= 2) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 229 TTTTtCTTTTTgTTTt 214 (Mism.= 3) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 219 AAAAAGAAA 227 (Mism.= 0) TFBS AC: RSP02299//OS: Durum wheat (Triticum durum) /GENE: Ttd1a/TFBS: CAAT motif /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 160 cTGCgTCAATATAT 173 (Mism.= 2) TFBS AC: RSP02675//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: GATA element /BF: Unknown GATA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 147 cAATAGATAaGT 158 (Mism.= 2) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 25 TaCACGTCGC 34 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0314..AC:AJ132002.1..OS:Craterostigma plantagineum..GENE:Ss2..PROD:sucrose synthase 2..[ -200: +51] ..CDS: +159..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.35 C - 0.20 TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 23 TTCACGTCGCGC 34 (Mism.= 2) TFBS AC: RSP01575//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: ICEr1 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 202 GGACAgATGTCcGA 189 (Mism.= 2) TFBS AC: RSP02299//OS: Durum wheat (Triticum durum) /GENE: Ttd1a/TFBS: CAAT motif /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 160 cTGCgTCAATATAT 173 (Mism.= 2) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "+" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 221 AAAGGCAA 228 (Mism.= 0) TFBS AC: RSP02675//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: GATA element /BF: Unknown GATA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00814 Up.Conf.Int. 1 Found 1 147 cAATAGATAaGT 158 (Mism.= 2) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 23 TtCACGTCGC 32 (Mism.= 1) TFBS AC: RSP02947//OS: maize (Zea mays) /GENE: NAD(P)-binding protein/TFBS: GBF6 BS/1 /BF: GBF6 Motifs on "+" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 26 ACGTcGCGC 34 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0315..AC:AF345985.1..OS:Pinus sylvestris..GENE:GS1b..PROD:glutamine synthetase..[ -200: +51] ..CDS: +68..TSS:201 (+1) |Other Plants | CCAAT motif on reverse strand Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.18 T - 0.36 C - 0.22 TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00604 Up.Conf.Int. 1 Found 1 58 CTTtTtGTCTTAA 70 (Mism.= 2) TFBS AC: RSP00837//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: NON /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 199 AGATCGAaGG 208 (Mism.= 1) TFBS AC: RSP01109//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rAT-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00651 Up.Conf.Int. 1 Found 1 230 ATAATTCT 223 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 51 CTATAAATA 43 (Mism.= 0) TFBS AC: RSP02724//OS: rice (Oryza sativa) /GENE: OsYSL2/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00803 Up.Conf.Int. 1 Found 1 237 caCAAGTATAA 227 (Mism.= 2) TFBS AC: RSP02794//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P8 /BF: GT-4 Motifs on "+" Strand: Mean Exp. Number 0.00650 Up.Conf.Int. 1 Found 1 65 tCTTAAAAAC 74 (Mism.= 1) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0316..AC:J02817.1..OS:Avena sativa..GENE: OGI-E1..PROD:12s globulin..[ -200: +51] ..CDS: +39 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.32 C - 0.21 TFBS AC: RSP00190//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: GCN4 box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 2 11 TGAGTCA 17 (Mism.= 0) 96 TGAGTCA 102 (Mism.= 0) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "+" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 134 tACATGTCAT 143 (Mism.= 1) TFBS AC: RSP00666//OS: rice (Oryza sativa), Oryza sativa /GENE: GluB-1/TFBS: GCN4 motif /BF: RISBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 2 11 TGAGTCA 17 (Mism.= 0) 96 TGAGTCA 102 (Mism.= 0) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 144 GATGACATGT 135 (Mism.= 1) TFBS AC: RSP00959//OS: barley (Hordeum vulgare) /GENE: Hor2/TFBS: GLM2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 2 11 TGAGTCA 17 (Mism.= 0) 96 TGAGTCA 102 (Mism.= 0) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 144 GATGACATGT 135 (Mism.= 1) TFBS AC: RSP01061//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCN4 motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00942 Up.Conf.Int. 1 Found 2 10 GTGAGTCAg 18 (Mism.= 1) 95 tTGAGTCAC 103 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00360 Up.Conf.Int. 1 Found 1 162 CTTTTTATGG 171 (Mism.= 1) TFBS AC: RSP02013//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_3) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 29 TACAGCTGgT 20 (Mism.= 1) TFBS AC: RSP02193//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00695 Up.Conf.Int. 1 Found 1 171 CCATaAAAAG 162 (Mism.= 1) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 162 CTTTTTATGG 171 (Mism.= 1) TFBS AC: RSP02280//OS: rice (Oryza sativa) /GENE: OsLKR/SDH/TFBS: GSN4 box /BF: RISBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 2 102 TGACTCA 96 (Mism.= 0) 17 TGACTCA 11 (Mism.= 0) TFBS AC: RSP02930//OS: maize (Zea mays) /GENE: GRMZM2G138689/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 1 142 TGACATGTAA 133 (Mism.= 0) Totally 18 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0317..AC:AY684928.1..OS:Hordeum vulgare (subsp. vulgare)..GENE:Lem2..PROD:jacalin related lectin-like protein LEM2..[ -200: +51] ..CDS: +70..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.28 C - 0.23 TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 166 CTATAAATAG 175 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 0) TFBS AC: RSP01827//OS: rice (Oryza sativa); sorghum bicolor (Sorghum japonicum) /GENE: Os/Sb ga2ox1/TFBS: KNOX BS (Os/Sb ga2ox1) /BF: KNOX Motifs on "+" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 1 109 TGACTAATTGAT 120 (Mism.= 1) TFBS AC: RSP01978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(P) /BF: EIN3/EIL1 Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 230 ATGTATGT 223 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 175 CtATTTATAG 166 (Mism.= 1) TFBS AC: RSP02548//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YAB3/TFBS: WUS BS (AS2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 100 ATTAATTG 93 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 166 CTATAAATAG 175 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 0) Totally 9 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0318..AC:X51474.1 NC_003076..OS:Arabidopsis thaliana..GENE:kin1..PROD:cold and ABA-inducible protein..[ -200: +51] ..CDS: +61..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.24 C - 0.25 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 139 ACtCGTGGC 147 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "-" Strand: Mean Exp. Number 0.00800 Up.Conf.Int. 1 Found 1 129 CCACGTGGat 120 (Mism.= 2) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "-" Strand: Mean Exp. Number 0.00800 Up.Conf.Int. 1 Found 1 129 CCACGTGGat 120 (Mism.= 2) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 48 GACACGTGaa 57 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 137 TtACtCGTGGCA 148 (Mism.= 2) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 1 57 TtCACGTGTC 48 (Mism.= 1) TFBS AC: RSP00426//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE1/ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 45 AaCGAcACGTG 55 (Mism.= 2) TFBS AC: RSP00471//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS1 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 154 GTGTGGtGCCa 144 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 49 ACACGTG 55 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 2 48 GaCACGTGaA 57 (Mism.= 2) 121 tCCACGTGGt 130 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 130 aCCACGTGGA 121 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 122 CCACGTGG 129 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 129 CCACGTGG 122 (Mism.= 0) TFBS AC: RSP00750//OS: Catharanthus roseus /GENE: STR/TFBS: BN rev /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 244 TTcTTGTAAAAT 233 (Mism.= 1) TFBS AC: RSP00841//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: 12 nt palindrome /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 142 cGTGGCaCCACA 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 153 TGTGGtGCCACg 142 (Mism.= 2) TFBS AC: RSP00878//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Site I /BF: RPCF-1 Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 122 CCAcGTGG 129 (Mism.= 1) TFBS AC: RSP00912//OS: barley (Hordeum vulgare) /GENE: HvABI5/TFBS: A3 /BF: HvABI5 Motifs on "+" Strand: Mean Exp. Number 0.00026 Up.Conf.Int. 1 Found 1 45 aACGaCACGTGAA 57 (Mism.= 2) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 148 TGCCACGaGTaA 137 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 148 TGCCACGaGtAA 137 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 57 tTCACGTGtC 48 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 121 TCCACGTGgt 130 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 57 TtCACGTGTC 48 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 48 GaCACGTGAa 57 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 48 gACACGTGaA 57 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 57 tTCACGTGTc 48 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 48 gACACGTGaA 57 (Mism.= 2) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 129 CCACGTGG 122 (Mism.= 1) TFBS AC: RSP01009//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB1A/DREB2A BS /BF: DREB1A; DREB2A Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP01010//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB2A BS /BF: DREB2A Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 54 ACGTGTC 48 (Mism.= 0) TFBS AC: RSP01112//OS: Brassica napus /GENE: LUC/TFBS: DRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 78 AGCTACCGACATAAGGC 94 (Mism.= 0) TFBS AC: RSP01139//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 124 ACGTGGTTT 132 (Mism.= 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00496 Up.Conf.Int. 1 Found 1 48 GACACGTGaa 57 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 122 CCACGTGG 129 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 129 CCACGTGG 122 (Mism.= 0) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00736 Up.Conf.Int. 1 Found 1 122 CcACGTGG 129 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 165 CTATAAATA 173 (Mism.= 0) TFBS AC: RSP01339//OS: Arabidopsis (Arabidopsis thaliana) /GENE: rd17/TFBS: DR1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 1) TFBS AC: RSP01610//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: DREB2C Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 120 ATCCACGTGgtT 131 (Mism.= 2) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00969 Up.Conf.Int. 1 Found 1 121 TCCACGT 127 (Mism.= 0) TFBS AC: RSP01763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: DRE /BF: TINY Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP01771//OS: barley (Hordeum vulgare) /GENE: Synthetic oligonucleotids/TFBS: DRE/CRT /BF: HvDREB1 Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP01779//OS: soybean (Glycine max L.) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 57 ttCACGTGTC 48 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 48 GACACGTGAA 57 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 57 ttCACGTGTC 48 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 122 CCACGTGGtt 131 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 129 CCACGTGGat 120 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 2 130 ACCACGTGga 121 (Mism.= 2) 57 ttCACGTGTC 48 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 48 gACACGTGaA 57 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 130 AcCACGTGgA 121 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 48 GACACGTG 55 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 48 gACACGTGAa 57 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 121 TCCACGTGGt 130 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 2 130 aCCACGTGGa 121 (Mism.= 2) 57 TtCACGTGtC 48 (Mism.= 2) TFBS AC: RSP02100//OS: maize (Zea mays) /GENE: A1/TFBS: P (-128) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 90 TATGTCGGTA 81 (Mism.= 1) TFBS AC: RSP02145//OS: dwarf apple, Malus baccata /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: MbDREB1 Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 122 CCACGTGG 129 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 129 CCACGTGG 122 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 122 cCACGTGG 129 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 129 cCACGTGG 122 (Mism.= 1) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 49 ACACGTGA 56 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 56 tCACGTGT 49 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 49 aCACGTGA 56 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 121 tCCACGTGgT 130 (Mism.= 2) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 129 CCACGT 124 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 129 CCACGT 124 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 48 GACACGTGAA 57 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 130 acCACGTGGA 121 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 57 ttCACGTGTC 48 (Mism.= 2) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 122 cCACGTGgTT 131 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 121 TcCACGTGgT 130 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 57 TtCACGTGTc 48 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 48 GACACGTGAA 57 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 130 acCACGTGGA 121 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 48 GACACGTGaa 57 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 48 GACACGTGAA 57 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00717 Up.Conf.Int. 1 Found 1 130 acCACGTGGA 121 (Mism.= 2) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 55 CACGTGTC 48 (Mism.= 1) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00736 Up.Conf.Int. 1 Found 1 123 CACGTGGT 130 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 55 CACGTGTC 48 (Mism.= 0) TFBS AC: RSP02652//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DBE /BF: DREB (At2g23340, At5g52020); ERF (At4g23750) Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP02677//OS: wild tomato (Solanum habrochaites) /GENE: Synthetic oligonucleotides/TFBS: CRT/DRE /BF: ShCBF1 Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 81 TACCGACAT 89 (Mism.= 0) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 122 CCACGTGG 129 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00049 Up.Conf.Int. 1 Found 1 129 CCACGTGG 122 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 54 ACGTGTC 48 (Mism.= 0) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 124 ACGTGG 129 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 48 GACACGTGAA 57 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 130 AcCACGTGGa 121 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 48 GaCACGTGAa 57 (Mism.= 2) TFBS AC: RSP02920//OS: Medicago truncatula /GENE: CYP93E2/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 147 gCCACGAGtA 138 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 121 tcCACGTGGT 130 (Mism.= 2) TFBS AC: RSP02924//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00538 Up.Conf.Int. 1 Found 1 147 gcCACGAGTA 138 (Mism.= 2) TFBS AC: RSP02925//OS: Medicago truncatula /GENE: UGT73K1/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 147 gcCACGAGTA 138 (Mism.= 2) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 57 TTCACGTGTC 48 (Mism.= 2) TFBS AC: RSP02927//OS: Medicago truncatula /GENE: UGT73F3/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 147 GcCACGAGtA 138 (Mism.= 2) Totally 101 motifs of 81 different TFBSs have been found ____________________________________________________________ >PLPR0319..AC:AY382595.1..OS:Craterostigma plantagineum..GENE:CpEdi-9..PROD:early dehydration inducible protein..[ -200: +51] ..CDS: +42..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.23 C - 0.29 TFBS AC: RSP00070//OS: rice (Oryza sativa) /GENE: Osem/TFBS: ABRE motif A /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 73 TACGTGTC 80 (Mism.= 0) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 150 TCCACGTAaC 159 (Mism.= 1) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 1 80 GaCACGTAAG 71 (Mism.= 1) TFBS AC: RSP00508//OS: soybean (Glycine max) /GENE: beta-conglicinin alfa'/TFBS: SEF4 BS /BF: SEF4 Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 9 cCATTTTTAaCA 20 (Mism.= 2) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "-" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 80 GaCACGTAAG 71 (Mism.= 1) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00998 Up.Conf.Int. 1 Found 1 24 AAAttGTTAAAA 13 (Mism.= 2) TFBS AC: RSP01024//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: R1 /BF: unknown BF Motifs on "-" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 60 AGAAACT 54 (Mism.= 0) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 74 ACGTGTC 80 (Mism.= 0) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 72 TtACGTGT 79 (Mism.= 1) TFBS AC: RSP01261//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS8 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 72 TTACGTGT 79 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 150 TCCACGTAaC 159 (Mism.= 1) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 41 TCCACGTtAT 50 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00714 Up.Conf.Int. 1 Found 1 169 CTATAAATAG 178 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00714 Up.Conf.Int. 1 Found 1 178 CTATTTATAG 169 (Mism.= 0) TFBS AC: RSP01756//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS2 /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 133 CCATCGAC 140 (Mism.= 0) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00496 Up.Conf.Int. 1 Found 1 71 CTtACGTGtC 80 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 178 CTATTTATAG 169 (Mism.= 1) TFBS AC: RSP02317//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DREB2A/TFBS: ABRE /BF: AREB/ABF Motifs on "-" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 80 GACACGTA 73 (Mism.= 0) TFBS AC: RSP02768//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC055 BS /BF: ANAC055 Motifs on "-" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 161 gAGTTACGTG 152 (Mism.= 1) TFBS AC: RSP02769//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC019 BS /BF: ANAC019 Motifs on "-" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 161 gAGTTACGTG 152 (Mism.= 1) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 74 ACGTGTC 80 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 169 CTATAAATAG 178 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 178 CTATTTATAG 169 (Mism.= 0) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "-" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 60 AGAAACTgCC 51 (Mism.= 1) Totally 25 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0320..AC:U55051..OS:Pseudotsuga menziesii [Mirb] Franco..GENE:gPmMTa..PROD:metallothionein-like protein..[ -200: +51] ..CDS: +91..TSS:201 (+1) |Other Plants | CCAAT motif on reverse strand Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.21 T - 0.30 C - 0.24 TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 101 GACACGTGGt 92 (Mism.= 1) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 177 GCCACGgAAG 186 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 92 aCCACGTGTC 101 (Mism.= 1) TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 206 AtCAAAGCAA 215 (Mism.= 1) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 24 CAGAATAA 17 (Mism.= 0) TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 124 CCAAaCAACA 115 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 1 92 aCCACGTGTC 101 (Mism.= 1) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 150 ATGgCCCACA 141 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 1 101 GACACGTGGT 92 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 100 ACACGTGG 93 (Mism.= 0) TFBS AC: RSP01450//OS: rice (Oryza sativa) /GENE: OsFDH/TFBS: OsFDH-OsIRO2-BS /BF: OsIRO2 Motifs on "-" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 101 GACACGTGGTggA 89 (Mism.= 2) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00463 Up.Conf.Int. 1 Found 1 91 caCCACGTGTCT 102 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 92 aCCACGTGTC 101 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00248 Up.Conf.Int. 1 Found 1 92 ACCACGTGTC 101 (Mism.= 0) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 101 GACACGTG 94 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 91 CAcCACGTGTCt 102 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 1 101 GACACGTGGt 92 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 1 101 GACACGTGGt 92 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 101 GACACGTGgT 92 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 101 GACACGTGGt 92 (Mism.= 1) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 99 CACGTGGT 92 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 94 CACGTGTC 101 (Mism.= 0) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 77 GTGGGACaGG 68 (Mism.= 1) TFBS AC: RSP02734//OS: Chlamydomonas reinhardtii /GENE: GPXH/GPX5/TFBS: ERE /BF: SOR1 Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 39 CAACGTTG 46 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 46 CAACGTTG 39 (Mism.= 0) TFBS AC: RSP02735//OS: Chlamydomonas reinhardtii /GENE: GSTS1/TFBS: ERE /BF: SOR1 Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 39 CAACGTTG 46 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 46 CAACGTTG 39 (Mism.= 0) Totally 27 motifs of 25 different TFBSs have been found ____________________________________________________________ >PLPR0321..AC:AB058924.1..OS:Hordeum vulgare (cultivar:Igri)..GENE:HvPKABA1..PROD:protein kinase..[ -200: +51] ..CDS: +193..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.18 G - 0.25 T - 0.26 C - 0.31 TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00472 Up.Conf.Int. 1 Found 1 113 CACACGTC 120 (Mism.= 0) TFBS AC: RSP00163//OS: soybean (Glycine max) /GENE: synthetic oligonucleotides/TFBS: DR5 /BF: ARF1 Motifs on "-" Strand: Mean Exp. Number 0.00889 Up.Conf.Int. 1 Found 1 147 CCTTTcGTCgC 137 (Mism.= 2) TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 113 caCACGTCGCGC 124 (Mism.= 2) TFBS AC: RSP01025//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: R2 /BF: unknown BF Motifs on "+" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 33 AGAATCT 39 (Mism.= 0) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 33 AGAATCTT 40 (Mism.= 1) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 33 AGAATCTT 40 (Mism.= 0) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 92 CcAACGTACA 83 (Mism.= 1) TFBS AC: RSP01153//OS: maize (Zea mays) /GENE: Em/TFBS: Em1c /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 92 CcAACGTACA 83 (Mism.= 1) TFBS AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Quant. Seq.) /BF: AT-Hook Proteins Motifs on "-" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 46 CgATAAAAgATT 35 (Mism.= 2) TFBS AC: RSP01703//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT2/DRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00386 Up.Conf.Int. 1 Found 1 206 CCGACGTCTC 215 (Mism.= 1) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 206 GCCAtGTGTC 197 (Mism.= 1) TFBS AC: RSP01868//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: GARP BS 1 /BF: GARP transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00734 Up.Conf.Int. 1 Found 1 33 AGAATCTTT 41 (Mism.= 0) TFBS AC: RSP02012//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 206 GCCATGTGtC 197 (Mism.= 1) TFBS AC: RSP02618//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE1 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 85 TACGTTGG 92 (Mism.= 0) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "-" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 83 AAAAgATCT 75 (Mism.= 1) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0322..AC:AF182197.1..OS:Hordeum vulgare (subsp. vulgare)..GENE:rsh1..PROD:RNAse S-like protein precursor..[ -200: +51] ..CDS: +85..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.22 C - 0.25 TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 153 CtACCAACCCCC 142 (Mism.= 1) TFBS AC: RSP00489//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00405 Up.Conf.Int. 1 Found 1 156 TgCCTACCAA 147 (Mism.= 1) TFBS AC: RSP00651//OS: maize (Zea mays) /GENE: a1/TFBS: C1 PBS/P /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 155 gCCTACCAACC 145 (Mism.= 1) TFBS AC: RSP00652//OS: maize (Zea mays) /GENE: a1/TFBS: C1 DBS /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 185 CCGGTAGT 192 (Mism.= 0) TFBS AC: RSP00739//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 1 homolog (2) /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 156 TgcCTACCAACC 145 (Mism.= 2) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 154 CCtACcAACCCC 143 (Mism.= 2) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 136 ttTATTTTTTCTG 124 (Mism.= 2) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 86 ATACGTGT 93 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 168 CTATAAATA 176 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 168 CTATAAATAC 177 (Mism.= 0) TFBS AC: RSP01454//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-II /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 151 ACCAACC 145 (Mism.= 0) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 95 ccACACGTATAA 84 (Mism.= 2) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00288 Up.Conf.Int. 1 Found 1 94 CACACGTATa 85 (Mism.= 1) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 151 ACCAACC 145 (Mism.= 0) TFBS AC: RSP02589//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 151 ACCAACC 145 (Mism.= 0) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 152 TACCAACC 145 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 169 TATAAATA 176 (Mism.= 0) TFBS AC: RSP02904//OS: rice (Oryza sativa) /GENE: Os01t0182700/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 151 ACCAACC 145 (Mism.= 0) TFBS AC: RSP02906//OS: rice (Oryza sativa) /GENE: Os05t0499400/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 151 ACCAACC 145 (Mism.= 0) TFBS AC: RSP02907//OS: rice (Oryza sativa) /GENE: Os10t0474900/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 145 GGTTGGT 151 (Mism.= 0) TFBS AC: RSP02908//OS: rice (Oryza sativa) /GENE: Os11to4358/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 151 ACCAACC 145 (Mism.= 0) Totally 22 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0323..AC:AF285176.1..OS:Musa x paradisiaca..GENE:ACT1..PROD:actin..[ -200: +51] ..CDS:+1055..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.19 T - 0.31 C - 0.24 TFBS AC: RSP00017//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF3-BE /BF: SEF3, soybean Embryo Factor 3 Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 107 AtCCCA 102 --25-- 76 AACCCA 71 (Mism.= 1/ 0) TFBS AC: RSP00020//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box6 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 135 GTCGAGTtAAtA 146 (Mism.= 2) TFBS AC: RSP00035//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: D1 /BF: DOF Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 25 CAAAAGG 31 (Mism.= 0) TFBS AC: RSP00196//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 30 CTTTTGTGTtCgTcA 16 (Mism.= 3) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 213 GAAAAAGgAAAAGaAc 198 (Mism.= 3) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 202 TTTTcCTTTTTCTcTC 217 (Mism.= 2) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 78 AATcTTTTTATT 89 (Mism.= 1) TFBS AC: RSP01208//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 73 CCAGTGTTTTGT 62 (Mism.= 2) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 120 ATACGTGT 113 (Mism.= 0) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 188 CTgTGTCTCT 179 (Mism.= 1) TFBS AC: RSP01702//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 112 AACACGTATc 121 (Mism.= 1) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 112 aACACGTATC 121 (Mism.= 1) TFBS AC: RSP02209//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: P1BS (SmPT4) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 31 GCATATTC 38 (Mism.= 0) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00371 Up.Conf.Int. 1 Found 1 121 GAtACGTGTT 112 (Mism.= 1) TFBS AC: RSP02733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS3/TFBS: P1BS /BF: PHR1 Motifs on "-" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 38 GAATATGC 31 (Mism.= 0) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0324..AC:NM_105646.1..OS:Arabidopsis thaliana..GENE:ATHB13..PROD:HD-Zip transcription factor..[ -200: +51] ..CDS: +223..TSS:201 (+1) # Alternative TSS(s): -5 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.40 C - 0.17 TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00519 Up.Conf.Int. 1 Found 1 122 AGAAAGAGA 114 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 5 244 AGAGAGAGA 236 (Mism.= 0) 242 AGAGAGAGA 234 (Mism.= 0) 155 AGAGAGAGA 147 (Mism.= 0) 153 AGAGAGAGA 145 (Mism.= 0) 151 AGAGAGAGA 143 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 5 243 GAGAGAGAGAtAGtGAA 227 (Mism.= 2) 158 ctGAGAGAGAGAGAGAg 142 (Mism.= 3) 156 GAGAGAGAGAGAGAGgg 140 (Mism.= 2) 154 GAGAGAGAGAGAGgGAc 138 (Mism.= 2) 152 GAGAGAGAGAGgGAcAt 136 (Mism.= 3) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 9 136 aTgTCcCTCTCTCTCT 151 (Mism.= 3) 138 gTCcCTCTCTCTCTCT 153 (Mism.= 2) 140 CcCTCTCTCTCTCTCT 155 (Mism.= 1) 142 CTCTCTCTCTCTCTCa 157 (Mism.= 1) 144 CTCTCTCTCTCTCagc 159 (Mism.= 3) 146 CTCTCTCTCTCagcCT 161 (Mism.= 3) 227 tTCaCTaTCTCTCTCT 242 (Mism.= 3) 229 CaCTaTCTCTCTCTCT 244 (Mism.= 2) 231 CTaTCTCTCTCTCTtT 246 (Mism.= 2) Totally 20 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0325..AC:S82324.1..OS:Zea mays=maize, cv. Merit..GENE:CaM kinase homolog MCK1..PROD:calcium/calmodulin-dependent protein kinase homolog..[ -200: +51] ..CDS: +119..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.15 G - 0.27 T - 0.21 C - 0.37 TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 157 TTCTCTCTCCT 147 (Mism.= 0) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 76 CACCCACTcC 67 (Mism.= 1) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 150 AGAgAGAAA 158 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 150 AGAGAGaAA 158 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 2 148 gGAGAGAGA 156 (Mism.= 1) 150 AGAGAGAaA 158 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00265 Up.Conf.Int. 1 Found 1 148 GGAGAGAGA 156 (Mism.= 0) TFBS AC: RSP00935//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: CT element /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 171 CCTCTCgcTCCCTC 184 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 149 CCTCcCCcTCCCTC 136 (Mism.= 2) TFBS AC: RSP01069//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: GH3/TFBS: D1 /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 191 CCTCcTGTCTC 201 (Mism.= 1) TFBS AC: RSP01090//OS: pea (Pisum sativum) /GENE: GS2/TFBS: TATA box /BF: TBF Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 161 TTATTT 156 (Mism.= 0) TFBS AC: RSP01228//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00022 Up.Conf.Int. 1 Found 1 79 ATcCACCcACTCCC 66 (Mism.= 2) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 153 CTCTCCTCcCCcTCc 139 (Mism.= 3) TFBS AC: RSP01794//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BCCP2/TFBS: AW-box 2 /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00017 Up.Conf.Int. 1 Found 1 139 CCTCGGTTACAGCG 126 (Mism.= 2) TFBS AC: RSP01817//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: GAAATA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 154 aGAAATAA 161 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 172 CTCTCgCTCcCTCcCT 187 (Mism.= 3) TFBS AC: RSP02407//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ASF1B/TFBS: E2F BS (-138) /BF: E2Fa/DPa; E2Fe; E2Ff Motifs on "+" Strand: Mean Exp. Number 0.00542 Up.Conf.Int. 1 Found 1 198 TCTCGCGCC 206 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 181 GGAGCGAGAG 172 (Mism.= 1) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 152 TCTCCTCCcC 143 (Mism.= 1) Totally 19 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0326..AC:Z25811.1..OS:Oryza sativa L...GENE:salT..PROD:salt tolerance response protein..[ -200: +51] ..CDS: +652..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.23 T - 0.20 C - 0.19 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00691 Up.Conf.Int. 1 Found 1 139 CATcCA 134 -- 6-- 127 CACcTG 122 (Mism.= 1/ 1) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "-" Strand: Mean Exp. Number 0.00364 Up.Conf.Int. 1 Found 1 30 AGCCGCCgT 22 (Mism.= 1) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00995 Up.Conf.Int. 1 Found 1 40 AGGATaGATGg 50 (Mism.= 2) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 93 aCATGCATGa 102 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 102 TCATGCATGT 93 (Mism.= 2) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 156 CTATAAATA 164 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00039 Up.Conf.Int. 1 Found 1 102 TCATGCATGT 93 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 156 CTATAAATAG 165 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 165 CTATTTATAG 156 (Mism.= 0) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP02011//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_1) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 90 AGCACATGCa 99 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 165 CTATTTATAG 156 (Mism.= 1) TFBS AC: RSP02231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-consensus /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00368 Up.Conf.Int. 1 Found 1 30 AGCCGCCG 23 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 30 AGCCGCC 24 (Mism.= 0) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "-" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 102 tCAtGCATGTG 92 (Mism.= 2) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 94 CATGCATG 101 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00256 Up.Conf.Int. 1 Found 1 101 CATGCATG 94 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 156 CTATAAATAG 165 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 165 CTATTTATAG 156 (Mism.= 0) Totally 37 motifs of 30 different TFBSs have been found ____________________________________________________________ >PLPR0327..AC:AB024081.1..OS:Cucumis sativus..GENE:NPR..PROD:NADPH-protochlorophyllide oxidoreductase..[ -200: +51] ..CDS: +62..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.09 T - 0.39 C - 0.24 TFBS AC: RSP00231//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CCAAT box 1 /BF: unknown Motifs on "-" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 47 CCAATCA 41 (Mism.= 0) TFBS AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS5 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 49 AACCAATCag 40 (Mism.= 2) TFBS AC: RSP00888//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (2) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 9 AAAAATCTA 17 (Mism.= 0) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 48 ACCAATCAG 40 (Mism.= 0) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 48 ACCAATCAG 40 (Mism.= 0) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 235 TCTCTTGTTGT 245 (Mism.= 1) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00591 Up.Conf.Int. 1 Found 1 48 ACCAAtCA 41 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0328..AC:AJ306592.1..OS:Oryza sativa (subsp. indica)..GENE:tub-16..PROD:beta-tubulin 16..[ -200: +51] ..CDS: +290..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.24 T - 0.35 C - 0.17 TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 176 TAAATGCA 169 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 111 CTATAAATcC 120 (Mism.= 1) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 111 CTATAAATcC 120 (Mism.= 1) TFBS AC: RSP01862//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE3 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 214 aCCTAGTGTC 205 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 138 CCATTTTTAG 147 (Mism.= 1) TFBS AC: RSP02767//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAP BS /BF: NAP Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 238 GTTtCGTAT 230 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 147 CTAAAAATGG 138 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0329..AC:D13718.1..OS:Nicotiana sylvestris..GENE:psaDb..PROD:PSI-D1 (precursor)..[ -200: +51] ..CDS: +23..TSS:201 (+1) # Alternative TSS(s): +9 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.11 T - 0.37 C - 0.28 TFBS AC: RSP00089//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 231/219 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00030 Up.Conf.Int. 1 Found 1 70 gGcTAGGGTGCG 81 (Mism.= 2) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 72 GCCAaGTCAG 63 (Mism.= 1) TFBS AC: RSP00561//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 9/10 L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 179 tATTTTTG 172 -- 7-- 164 gAAGAG 159 (Mism.= 1/ 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00261 Up.Conf.Int. 1 Found 1 62 GcTGACtTGG 71 (Mism.= 2) TFBS AC: RSP01046//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: NON /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 209 CAATCCAAC 217 (Mism.= 0) TFBS AC: RSP01094//OS: pea (Pisum sativum) /GENE: GS2/TFBS: GT-1 box /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00857 Up.Conf.Int. 1 Found 1 99 TAATTGGgcAAA 110 (Mism.= 2) TFBS AC: RSP01192//OS: Tobacco; Nicotiana tabacum /GENE: Adh2/TFBS: D-box /BF: D factor Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 72 CTAGGGTGCG 81 (Mism.= 2) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "+" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 62 GcTGACtTGGC 72 (Mism.= 2) TFBS AC: RSP02107//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 79 CACCCT 74 (Mism.= 0) TFBS AC: RSP02398//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: ABRE /BF: ThABF8 Motifs on "-" Strand: Mean Exp. Number 0.00471 Up.Conf.Int. 1 Found 1 97 AACGTGTG 90 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 72 GCCAaGTCAGC 62 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0330..AC:AY267899.1..OS:Nicotiana plumbaginifolia..GENE:ABC1..PROD:ABC1 protein..[ -200: +51] ..CDS: +77..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.09 T - 0.35 C - 0.20 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 106 GGCGGC 101 (Mism.= 0) TFBS AC: RSP00696//OS: Brassica oleracea /GENE: SLG13/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 89 aACAATGcTATAG 101 (Mism.= 2) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP01741//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY11) BS3 /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 40 TTATTGACCtAAT 28 (Mism.= 1) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP01979//OS: Arabidopsis (Arabidopsis thaliana) /GENE: EBF2/TFBS: EIN3 BS2 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 64 ATGTATAC 71 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 219 TTCATTTGAt 228 (Mism.= 1) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP02305//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS2 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 27 ATtTTGACgAAT 16 (Mism.= 2) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 27 ATTtTGACgAAT 16 (Mism.= 2) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 100 AGCCGCC 106 (Mism.= 0) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 20 GTCAAAAT 27 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "+" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 99 tAGCCGCCcC 108 (Mism.= 2) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 101 GCCGCC 106 (Mism.= 0) TFBS AC: RSP02955//OS: maize (Zea mays) /GENE: FIP1/TFBS: WRI1 BS /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 100 aGCCGCCCC 108 (Mism.= 1) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 219 tTCATTTGAT 228 (Mism.= 1) Totally 31 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0331..AC:AF209212.1 M73029.1..OS:Zea mays..GENE:P (P1-rr)..PROD:myb-like transcription factor (P) protein.. [-35:+50].. ..CDS: +321..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.23 T - 0.25 C - 0.27 TFBS AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 76/65 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 35 aAAGGGTcCAAA 46 (Mism.= 2) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 56 TAAATGCA 49 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 53 TTTAaAATTTTTT 65 (Mism.= 1) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 108 CAAACGTgCA 117 (Mism.= 1) TFBS AC: RSP01153//OS: maize (Zea mays) /GENE: Em/TFBS: Em1c /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 108 CAAACGTgCA 117 (Mism.= 1) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 49 AGTTTtGgaCCCTTT 35 (Mism.= 3) TFBS AC: RSP01458//OS: soybean (Glycine max) /GENE: BiP9/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 52 ATTTAAAAtTTTt 64 (Mism.= 2) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "+" Strand: Mean Exp. Number 0.00940 Up.Conf.Int. 1 Found 1 73 AAACGTGatTTT 84 (Mism.= 2) TFBS AC: RSP01682//OS: pea (Pisum sativum) /GENE: FBPase/TFBS: PF1 BS /BF: PF1 Motifs on "+" Strand: Mean Exp. Number 0.00085 Up.Conf.Int. 1 Found 1 49 tgCATTTAAAAtTTTT 64 (Mism.= 3) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 71 cTAaACGTGATT 82 (Mism.= 2) TFBS AC: RSP02036//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ORA59 (At1g06160)/TFBS: STY1 BS (ORA59) /BF: STY1 Motifs on "+" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 122 gCACTCTACtA 132 (Mism.= 2) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 59 ATTTTTTTAg 68 (Mism.= 1) TFBS AC: RSP02528//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 152 ACGTACTC 159 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0332..AC:M35868.1..OS:Arabidopsis thaliana..GENE:FedA..PROD:ferrodoxin A..[ -200: +51] ..CDS: +51..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.10 T - 0.22 C - 0.27 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 136 cCACGTGGC 128 (Mism.= 1) TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 128 GCCaCGTGGt 137 (Mism.= 2) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 134 ACGTGGCGT 126 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 128 GCCACGTGGt 137 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 137 aCCACGTGGC 128 (Mism.= 1) TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 144 CCtAtCTACC 135 (Mism.= 2) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "-" Strand: Mean Exp. Number 0.00674 Up.Conf.Int. 1 Found 1 136 CCACGTGGCg 127 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "-" Strand: Mean Exp. Number 0.00674 Up.Conf.Int. 1 Found 1 136 CCACGTGGCg 127 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 135 CACGTGGC 128 (Mism.= 0) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 137 aCCACGTgGC 128 (Mism.= 2) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 128 GcCACGTGGt 137 (Mism.= 2) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 144 CCtAtCTACC 135 (Mism.= 2) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 128 GCCACGTGGt 137 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 129 CCACGTGG 136 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 136 CCACGTGG 129 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 135 CACGTGGC 128 (Mism.= 0) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00974 Up.Conf.Int. 1 Found 1 171 AAAAGGTgAgAA 160 (Mism.= 2) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 47 TCTTAAAGTGt 57 (Mism.= 1) TFBS AC: RSP00878//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Site I /BF: RPCF-1 Motifs on "+" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 129 CCAcGTGG 136 (Mism.= 1) TFBS AC: RSP00912//OS: barley (Hordeum vulgare) /GENE: HvABI5/TFBS: A3 /BF: HvABI5 Motifs on "+" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 125 GACGCCACGTGgt 137 (Mism.= 2) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00854 Up.Conf.Int. 1 Found 1 36 GTTGAGGTGA 27 (Mism.= 1) TFBS AC: RSP00931//OS: French bean (Phaseolus vulgaris) /GENE: CHS/TFBS: H-box IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 144 CCTATC 139 (Mism.= 0) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00224 Up.Conf.Int. 1 Found 1 127 cGCCACGTGGtA 138 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 137 aCCACGTGgC 128 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 128 GcCACGTGgT 137 (Mism.= 2) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00354 Up.Conf.Int. 1 Found 1 136 CCACGTgG 129 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 134 ACGTGGC 128 (Mism.= 0) TFBS AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE II /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 137 aCCaCGTGGC 128 (Mism.= 2) TFBS AC: RSP01106//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rHex /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00186 Up.Conf.Int. 1 Found 1 126 ACGCCACGTgg 136 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 128 GCCACGTGGT 137 (Mism.= 2) TFBS AC: RSP01183//OS: Petunia hybrida /GENE: chsA/TFBS: TacPyAT module /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00066 Up.Conf.Int. 1 Found 1 145 TcCTATCTACCAc 133 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 129 CCACGTGG 136 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 136 CCACGTGG 129 (Mism.= 0) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 129 cCACGTGG 136 (Mism.= 1) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 129 CcACGTGG 136 (Mism.= 1) TFBS AC: RSP01378//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Fd-2/TFBS: fed-CMA1 I-box - G-box] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 99 ACGATAATC 107 --20-- 128 GCCACGTGGTA 138 (Mism.= 0/ 0) TFBS AC: RSP01378//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Fd-2/TFBS: fed-CMA1 [G-box - I-box-like motif] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 128 GCCACGTGGTA 138 -- 0-- 139 GATAGGA 145 (Mism.= 0/ 0) TFBS AC: RSP01379//OS: pea (Pisum sativum) /GENE: Fd-1/TFBS: fed-CMA1 [G-box - I-box-like motif] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 128 GCCACgTGGtA 138 -- 0-- 139 GATAGGa 145 (Mism.= 2/ 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 135 CACGTGGC 128 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 128 GCCACGTGgt 137 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 137 aCCACGTGgC 128 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 129 CCACGTGGta 138 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 136 CCACGTGGCg 127 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 137 ACCACGTGgC 128 (Mism.= 1) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 137 AcCACGTGgC 128 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 128 gCCACGTGGt 137 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 137 aCCACGTGGC 128 (Mism.= 1) TFBS AC: RSP02188//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp31/VI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 64 gtTTGACACAC 54 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 129 CCACGTGG 136 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 136 CCACGTGG 129 (Mism.= 0) TFBS AC: RSP02289//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: ATCT-motif /BF: 63-kDa TF; 52-kDa (b3-domain) TF Motifs on "-" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 147 AATCCTATCTA 137 (Mism.= 2) TFBS AC: RSP02296//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00414 Up.Conf.Int. 1 Found 1 14 gaCCACGTAATA 25 (Mism.= 2) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 129 cCACGTGG 136 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 136 cCACGTGG 129 (Mism.= 1) TFBS AC: RSP02409//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS2 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 56 CACTTTA 50 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 128 GCCACGTGgT 137 (Mism.= 1) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 136 CCACGT 131 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 136 CCACGT 131 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 128 GcCACGTGGt 137 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 128 GcCACGTGGt 137 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 128 GcCACGTGgT 137 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00503 Up.Conf.Int. 1 Found 1 128 GcCACGTGGt 137 (Mism.= 2) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 135 CACGTGgC 128 (Mism.= 1) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 130 CACGTGGT 137 (Mism.= 0) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 129 CCACGTGG 136 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 136 CCACGTGG 129 (Mism.= 0) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 131 ACGTGG 136 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 134 ACGTGGC 128 (Mism.= 0) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 137 AcCACGTGGC 128 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 128 GcCACGTGgT 137 (Mism.= 2) TFBS AC: RSP02916//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS3 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 142 TATCTACCAc 133 (Mism.= 1) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 128 gcCACGTGGT 137 (Mism.= 2) TFBS AC: RSP02947//OS: maize (Zea mays) /GENE: NAD(P)-binding protein/TFBS: GBF6 BS/1 /BF: GBF6 Motifs on "-" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 134 ACGTGGCGt 126 (Mism.= 1) Totally 73 motifs of 64 different TFBSs have been found ____________________________________________________________ >PLPR0333..AC:X69794.1..OS:Nicotiana tabacum..GENE:PR-2d..PROD:acidic beta-1,3-glucanase..[ -200: +51] ..CDS: +53..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.16 T - 0.39 C - 0.20 TFBS AC: RSP00039//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT56; LAT59;/TFBS: 56/59 box /BF: GT-1 related transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 212 TGAAATTGTGc 202 (Mism.= 1) TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 169 GACAaGTAGA 160 (Mism.= 1) TFBS AC: RSP00399//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: ATF /BF: AP1-like leucine zipper factor Motifs on "-" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 63 GCACGTCA 56 (Mism.= 0) TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00854 Up.Conf.Int. 1 Found 1 78 cTTGGTTAATAAa 90 (Mism.= 2) TFBS AC: RSP00727//OS: tobacco (Nicotiana tabacum) /GENE: Ubi.U4/TFBS: U-box /BF: unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 10 GCTTGAC 16 (Mism.= 0) TFBS AC: RSP00884//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: AZM /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 63 GCACGTCA 56 (Mism.= 0) TFBS AC: RSP02183//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp24/IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 234 GAaTAATTAgATAC 221 (Mism.= 2) TFBS AC: RSP02710//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 2 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00589 Up.Conf.Int. 1 Found 1 246 ATGGAAAtGAG 236 (Mism.= 1) TFBS AC: RSP02959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box A /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 214 CTCAAGTGTa 223 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0334..AC:X64352.1..OS:Spinacia oleracea..GENE:psaF..PROD:photosystem I subunit III..[ -200: +51] ..CDS: +188..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.09 T - 0.23 C - 0.29 TFBS AC: RSP00058//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: CE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 49 TGCCACCGt 57 (Mism.= 1) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 204 gTtCATATTTTgGGT 190 (Mism.= 3) TFBS AC: RSP00940//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II* /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 61 TTCcACGGTG 52 (Mism.= 1) TFBS AC: RSP00979//OS: soybean (Glycine max) /GENE: vspA/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00208 Up.Conf.Int. 1 Found 1 218 CCATACAACT 227 (Mism.= 0) TFBS AC: RSP01088//OS: sunflower (Helianthus annuus) /GENE: CYC6; CPX1; CRD1; CTR; CTH1locus;/TFBS: CuRE 2 /BF: CRR1 Motifs on "-" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 24 GGGTACCA 17 (Mism.= 0) TFBS AC: RSP01825//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI5/TFBS: CE1-like element /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 50 GCCACCG 56 (Mism.= 0) TFBS AC: RSP01995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CE1 /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 49 TGCCACCGt 57 (Mism.= 1) TFBS AC: RSP02489//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (2) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00944 Up.Conf.Int. 1 Found 1 20 ACCAAT 15 (Mism.= 0) TFBS AC: RSP02762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS2 (MYB58) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 21 TACCAAtT 14 (Mism.= 1) TFBS AC: RSP02763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS1 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 21 TACCAAtT 14 (Mism.= 1) TFBS AC: RSP02765//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS3 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00908 Up.Conf.Int. 1 Found 1 21 TACCAAtT 14 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0335..AC:X00806..OS:Pisum sativum..GENE: rbcS..PROD:small subunit of ribulose-1,5-bisphosphate carboxylase..[ -200: +51] ..CDS: +36 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.29 C - 0.18 TFBS AC: RSP00205//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 51 GTGTGGTTAATATG 64 (Mism.= 0) TFBS AC: RSP00228//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 77 ATCATTTTCACa 88 (Mism.= 1) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 148 GAAAtAGaAAAAtCAA 163 (Mism.= 3) TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00592 Up.Conf.Int. 1 Found 1 143 aTTaTGGTCTTAA 131 (Mism.= 2) TFBS AC: RSP00627//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: GA-1 SITE /BF: GAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 18 ATGATAAGG 26 (Mism.= 0) TFBS AC: RSP00760//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: motif III /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 137 cCATAAT 143 --23-- 167 ATTATAT 173 (Mism.= 1/ 0) TFBS AC: RSP00941//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box I /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 41 TTTCAATC 48 (Mism.= 0) TFBS AC: RSP00942//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 51 GTGTGGTTAATATGa 65 (Mism.= 1) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "+" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 70 AAAgTTTATCATTT 83 (Mism.= 1) TFBS AC: RSP01046//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: NON /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00143 Up.Conf.Int. 1 Found 1 87 CAATCCAAC 95 (Mism.= 0) TFBS AC: RSP01221//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: GARE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00904 Up.Conf.Int. 1 Found 1 17 TAgCCACC 10 (Mism.= 1) TFBS AC: RSP01333//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Box II, wild) /BF: BGTF Motifs on "+" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 50 TGTGTGGTTAATATG 64 (Mism.= 0) TFBS AC: RSP01361//OS: pea (Pisum sativum) /GENE: rbcS 8.0/TFBS: rbcS-CMA4 [TGG-motif - I-box] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 9 TGGTGGCTA 17 -- 0-- 18 ATGATAAGGTT 28 (Mism.= 0/ 0) TFBS AC: RSP01437//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: GATA /BF: R-GATA Motifs on "-" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 9 AATAGGATA 1 (Mism.= 0) TFBS AC: RSP01594//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 48 GATTGAAA 41 (Mism.= 0) TFBS AC: RSP01595//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box II /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 51 GTGTGGTTAATATGa 65 (Mism.= 1) TFBS AC: RSP01809//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GT-1bx /BF: GmGT-2A Motifs on "+" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 51 GTGTGGTTAATATG 64 (Mism.= 0) TFBS AC: RSP01925//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II-BOX III /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 51 GTGTGGTTAATATG 64 --12-- 77 ATCATTTTCACa 88 (Mism.= 0/ 1) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 117 GGCCACT 111 (Mism.= 0) TFBS AC: RSP02087//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 51 GTGTGGTTAATATG 64 (Mism.= 0) TFBS AC: RSP02088//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 77 ATCATTTTCAC 87 (Mism.= 0) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00248 Up.Conf.Int. 1 Found 1 165 ACATTATATA 174 (Mism.= 0) TFBS AC: RSP02090//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 191 AAGCTTTGCAA 201 (Mism.= 0) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "+" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 58 tAATATGACTGc 69 (Mism.= 2) Totally 24 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0336..AC:L08426.1..OS:Zea mays..GENE:apb4..PROD:auxin-binding protein 4..[ -200: +51] ..CDS: +99..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.24 C - 0.21 TFBS AC: RSP00211//OS: parsley, Petroselinum crispum /GENE: pr2/TFBS: HD-BS /BF: HD protein Motifs on "-" Strand: Mean Exp. Number 0.00840 Up.Conf.Int. 1 Found 1 48 CTAATTGTTTt 38 (Mism.= 1) TFBS AC: RSP01073//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em2b /BF: PvAlf Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 115 CAAGCAaAG 107 (Mism.= 1) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00665 Up.Conf.Int. 1 Found 1 189 TGtTGCTTTTtTCTg 175 (Mism.= 3) TFBS AC: RSP01632//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At5g51890/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 68 CTTAAAAGCTT 78 (Mism.= 2) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 68 CTTAAAAGCTT 78 (Mism.= 2) TFBS AC: RSP02845//OS: tomato (Solanum lycopersicum) /GENE: GAME4/TFBS: P box 2 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 16 tAACtCCGCA 7 (Mism.= 2) TFBS AC: RSP02876//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS3 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 144 AActGTCAATTG 133 (Mism.= 2) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0337..AC:X69321.1..OS:Daucus carota..GENE:Inva1*DC1..PROD:beta-fructofuranosidase..[ -200: +51] ..CDS: +99..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.06 T - 0.39 C - 0.27 TFBS AC: RSP00100//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: AuxRE /BF: ARF Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GAGAGA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 2 234 GAGAGA 239 (Mism.= 0) 236 GAGAGA 241 (Mism.= 0) TFBS AC: RSP00261//OS: soybean (Glycine max) /GENE: SAUR 15A/TFBS: NDE Box 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP00281//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif VII /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 2 240 CTCTC 236 (Mism.= 0) 238 CTCTC 234 (Mism.= 0) TFBS AC: RSP00384//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: GAGAG motif /BF: root-specific nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 2 234 GAGAG 238 (Mism.= 0) 236 GAGAG 240 (Mism.= 0) TFBS AC: RSP00462//OS: tomato (Lycopersicon esculentum) /GENE: RBCS1; RBCS2; RBCS3A;/TFBS: I-box /BF: IBF Motifs on "-" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 131 GGATGAGAgAAGA 119 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 168 TATAAATACCAc 179 (Mism.= 1) TFBS AC: RSP00597//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: GT-1/16 JJ1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 18 aTTAATTTtTGT 29 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 242 gTCTCTCTCCg 232 (Mism.= 2) TFBS AC: RSP00749//OS: Catharanthus roseus /GENE: STR/TFBS: BN /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 23 tTTTTGTAATTA 34 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 2 233 GGAGAGAGA 241 (Mism.= 1) 235 AGAGAGACA 243 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 233 GGAGAGAGA 241 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 210 GGAGAGAGA 202 (Mism.= 0) TFBS AC: RSP00937//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: I box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 119 TCTTcTCTCATCC 131 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01458//OS: soybean (Glycine max) /GENE: BiP9/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 94 ATTTAAAAATgTA 106 (Mism.= 1) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 246 aTATGTCTCT 237 (Mism.= 1) TFBS AC: RSP01798//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DRN/TFBS: AuxRE /BF: MONOPTEROS Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP01811//OS: banana (Musa acuminata subgroup Cavendish, cv Giant governor) /GENE: ARE/TFBS: ERE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP02081//OS: Humicola gricea /GENE: cbh1.1; cbh1.2; egl1; egl2; egl3; xyn1; pacC/TFBS: CreA BS (cons) /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 231 CCGGAG 236 (Mism.= 0) TFBS AC: RSP02416//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 88-91 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 206 AGAGATGC 199 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 214 GGAGGGAGAG 205 (Mism.= 1) TFBS AC: RSP02574//OS: maize (Zea mays) /GENE: RTCS/TFBS: AuRE /BF: ZmARF34 Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP02637//OS: rice (Oryza sativa) /GENE: SMOS1/TFBS: AuxRE1/AuxRE2 /BF: ARF Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP02642//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CalS5/TFBS: AuxRE /BF: ARF17 Motifs on "+" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 238 GAGACA 243 (Mism.= 0) TFBS AC: RSP02694//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LBD16/ASL18/TFBS: ARF7/ARF19 BS /BF: ARF7; ARF19 Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP02695//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LBD29/ASL16/TFBS: ARF7/ARF19 BS /BF: ARF7; ARF19 Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 243 TGTCTC 238 (Mism.= 0) TFBS AC: RSP02892//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 227 tCTcCCGGAGA 237 (Mism.= 2) Totally 34 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0338..AC:K02067..OS:Pisum sativum..GENE:LHC AB80..PROD:major light-harvesting chlorophyll a/b-binding protein (polypeptide 15) complex precursor..[ -200: +51] ..CDS: +69 |Taxon: Dicot |Promoter Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.14 T - 0.27 C - 0.19 TFBS AC: RSP00871//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 6 GtTGAGTCAT 15 (Mism.= 1) TFBS AC: RSP01082//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L4 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 116 AATCTCCAACtA 127 (Mism.= 1) TFBS AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 202 CCATTGATAAGG 213 (Mism.= 2) TFBS AC: RSP02014//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_1) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00131 Up.Conf.Int. 1 Found 1 63 TACAAATGAT 72 (Mism.= 0) TFBS AC: RSP02182//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp23/IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 247 ATTGAAAAG 239 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0339..AC:X06398..OS:Pisum sativum..GENE:cvcA..PROD:convicilin polypeptide..[ -200: +51] ..CDS: +29 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.31 C - 0.27 TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 64 GCCACCTC 71 (Mism.= 0) TFBS AC: RSP01055//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: GT-3a Box III (2) /BF: GT-3a Motifs on "+" Strand: Mean Exp. Number 0.00856 Up.Conf.Int. 1 Found 1 42 ACaGTTACAaT 52 (Mism.= 2) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00629 Up.Conf.Int. 1 Found 1 129 TCCACGTtAT 138 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 162 CTATAAATA 170 (Mism.= 0) TFBS AC: RSP01958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MT2B/TFBS: EEr /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 1 162 CTATAAATATC 172 (Mism.= 0) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00814 Up.Conf.Int. 1 Found 1 191 TTtCATCATCtAA 203 (Mism.= 2) TFBS AC: RSP02691//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: TCTAA box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00624 Up.Conf.Int. 1 Found 1 199 TCTAAAGT 206 (Mism.= 0) TFBS AC: RSP02798//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: Box I-3p /BF: SNF-A; SNF-B; SNF-C Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 80 TCAtTTCAACACtCGTCAAgTTaC 103 (Mism.= 4) TFBS AC: RSP02961//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box C /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 57 CTCAGTTGCc 66 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0340..AC:L19262.1..OS:Arabidopsis thaliana..GENE:HMG2..PROD:3-hydroxy-3-methylglutaryl-CoA reductase..[ -200: +51] ..CDS: +194..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.13 T - 0.27 C - 0.18 TFBS AC: RSP00131//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: CACA box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 97 AACACAT 91 (Mism.= 0) TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 156 TcCACTTTTGG 146 (Mism.= 1) TFBS AC: RSP00314//OS: arabidopsis (Arabidopsis thaliana) /GENE: GA3/TFBS: rbe /BF: RSG, a bZIP transcriptional activator; Motifs on "-" Strand: Mean Exp. Number 0.00109 Up.Conf.Int. 1 Found 1 55 TCCAACaTGGA 45 (Mism.= 1) TFBS AC: RSP00999//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 3'-III element /BF: 3AF3 Motifs on "-" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 184 TCACaATCTAA 174 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00669 Up.Conf.Int. 1 Found 1 156 TCCACTTTT 148 (Mism.= 1) TFBS AC: RSP02098//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE4 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 28 GAATAATTC 36 (Mism.= 0) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 146 CCAAAAGTGG 155 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 2 222 GAAGAAGAA 214 (Mism.= 0) 219 GAAGAAGAA 211 (Mism.= 0) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00041 Up.Conf.Int. 1 Found 1 225 CTCTCTCAC 233 (Mism.= 0) Totally 10 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0341..AC:L19262.1..OS:Arabidopsis thaliana..GENE:HMG2..PROD:3-hydroxy-3-methylglutaryl-CoA reductase..[ -200: +51] ..CDS: +71..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.28 C - 0.25 TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 149 ATcGAAATCAA 139 (Mism.= 1) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "+" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 134 TGACGTTG 141 (Mism.= 1) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "-" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 141 CaACGTCA 134 (Mism.= 1) TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "-" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 33 TcCACTTTTGG 23 (Mism.= 1) TFBS AC: RSP00661//OS: soybean (Glycine max) /GENE: vspB/TFBS: JA-RD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 122 ACCCaAcAACCTTgA 136 (Mism.= 3) TFBS AC: RSP00756//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif B /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 196 CTCACACT 203 (Mism.= 0) TFBS AC: RSP00872//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 1 157 TGTGTGACAT 148 (Mism.= 0) TFBS AC: RSP00999//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 3'-III element /BF: 3AF3 Motifs on "-" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 61 TCACaATCTAA 51 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 163 CTATAAATA 171 (Mism.= 0) TFBS AC: RSP01621//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E4 /BF: GmDof4; GmDof22 Motifs on "-" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 33 TcCACTTTTG 24 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 33 TCCACTTtT 25 (Mism.= 1) TFBS AC: RSP01817//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: GAAATA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 31 GGAAATAA 38 (Mism.= 0) TFBS AC: RSP02186//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp29/V /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00258 Up.Conf.Int. 1 Found 1 222 TTTGggCTCCAAA 210 (Mism.= 2) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 23 CCAAAAGTGG 32 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 32 CCACTTTTGG 23 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00188 Up.Conf.Int. 1 Found 2 99 GAAGAAGAA 91 (Mism.= 0) 96 GAAGAAGAA 88 (Mism.= 0) TFBS AC: RSP02831//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHSP70-4/TFBS: E2F2 BS /BF: E2F2 Motifs on "-" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 218 GGCtCCAAA 210 (Mism.= 1) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 102 CTCTCTCAC 110 (Mism.= 0) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00962 Up.Conf.Int. 1 Found 1 70 TCTCCTCCgt 61 (Mism.= 2) Totally 20 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0342..AC:AF331713.1..OS:Arabidopsis thaliana..GENE:WRKY6..PROD:transcription factor WRKY6..[ -200: +51] ..CDS: +127..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.26 C - 0.23 TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 150 TCCACGTCcC 159 (Mism.= 1) TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00995 Up.Conf.Int. 1 Found 1 233 CaACCAAaCCCC 244 (Mism.= 2) TFBS AC: RSP00112//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 63 TGACGTAA 70 (Mism.= 0) TFBS AC: RSP00203//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.1 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 71 TtTACGTCAG 62 (Mism.= 1) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 128 tAAAAAGaAAAAaCAA 143 (Mism.= 3) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 145 TTTTGtTTTTTCTTTt 130 (Mism.= 2) TFBS AC: RSP00674//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 2 /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 233 CAACCAAACCcCTa 246 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 2 230 AGAGAGAGA 222 (Mism.= 0) 228 AGAGAGAGA 220 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 2 230 aGAGAGAGA 222 (Mism.= 1) 228 aGAGAGAGA 220 (Mism.= 1) TFBS AC: RSP01091//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 106 ATAaAATCAAA 116 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 2 233 GAaAGAGAGAGAGAttA 217 (Mism.= 3) 229 GAGAGAGAGAttaAGAA 213 (Mism.= 3) TFBS AC: RSP01657//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MP/ARF5 (At1g19850)/TFBS: C/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00241 Up.Conf.Int. 1 Found 1 61 TcTGACGTAAAa 72 (Mism.= 2) TFBS AC: RSP01716//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00867 Up.Conf.Int. 1 Found 1 72 TTTTACGTcAGA 61 (Mism.= 1) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 129 AAAAAGAAA 137 (Mism.= 0) TFBS AC: RSP02192//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-a) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 174 CTATAAAAAG 165 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 2 215 CTtaaTCTCTCTCTCT 230 (Mism.= 3) 219 aTCTCTCTCTCTtTCa 234 (Mism.= 3) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 165 CTtTTTATAG 174 (Mism.= 1) Totally 21 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0343..AC:S71525.1..OS:Glycine max..GENE:tubB1..PROD:beta-tubulin..[ -200: +51] ..CDS: +79..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.29 C - 0.24 TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "+" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 184 AtTcATTTTTATT 196 (Mism.= 2) TFBS AC: RSP00508//OS: soybean (Glycine max) /GENE: beta-conglicinin alfa'/TFBS: SEF4 BS /BF: SEF4 Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 225 cCATTTTTcTCA 236 (Mism.= 2) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 28 CCACTTG 22 (Mism.= 0) TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 66 CTTGTGGcCTTAt 54 (Mism.= 2) TFBS AC: RSP00646//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 199 GAAAaTAAAAATGa 186 (Mism.= 2) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 207 GtCAAGTGGA 198 (Mism.= 1) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 208 TGtCAaGTGGAA 197 (Mism.= 2) TFBS AC: RSP01472//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box-I /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 36 TCTtCCTACCa 26 (Mism.= 2) TFBS AC: RSP01528//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 36 TCTtCCTACCa 26 (Mism.= 2) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 90 TCTTGTCaCT 99 (Mism.= 1) TFBS AC: RSP01819//OS: tobacco (Nicotiana tabacum) /GENE: Pr-1a/TFBS: WK box /BF: NtWRKY12 Motifs on "+" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 195 TTTTCCAC 202 (Mism.= 0) TFBS AC: RSP02188//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp31/VI /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 201 ACTTGACACAa 211 (Mism.= 1) TFBS AC: RSP02254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Ep5C/TFBS: H box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 32 CCTACC 27 (Mism.= 0) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 28 CCACTTG 22 (Mism.= 0) TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 80 TCATGCAA 87 (Mism.= 0) TFBS AC: RSP02548//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YAB3/TFBS: WUS BS (AS2) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 169 ATTAATTG 176 (Mism.= 0) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "+" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 214 AAAGGCAA 221 (Mism.= 0) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0344..AC:S71525.1 M21296.1..OS:Glycine max..GENE:tubB1..PROD:beta-tubulin..[ -200: +51] ..CDS: +38..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.10 T - 0.33 C - 0.28 TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "+" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 95 AtTcATTTTTATT 107 (Mism.= 2) TFBS AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GAGAGA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00619 Up.Conf.Int. 1 Found 1 241 GAGAGA 246 (Mism.= 0) TFBS AC: RSP00434//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF-1beta/TFBS: TFIIIA-box /BF: TFIIIA Motifs on "+" Strand: Mean Exp. Number 0.00075 Up.Conf.Int. 1 Found 1 218 CTGGATTGAAttA 230 (Mism.= 2) TFBS AC: RSP00646//OS: carrot (Daucus carota) /GENE: DC 59/TFBS: C1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 110 GAAAaTAAAAATGa 97 (Mism.= 2) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00619 Up.Conf.Int. 1 Found 1 118 GtCAAGTGGA 109 (Mism.= 1) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 123 AGAAAGGcA 131 (Mism.= 1) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00499 Up.Conf.Int. 1 Found 1 119 TGtCAaGTGGAA 108 (Mism.= 2) TFBS AC: RSP00961//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: PB1 /BF: BPBF Motifs on "-" Strand: Mean Exp. Number 0.00698 Up.Conf.Int. 1 Found 1 166 TGCAAAAG 159 (Mism.= 0) TFBS AC: RSP01039//OS: parsley, Petroselinum crispum /GENE: Icy/TFBS: DOF BS1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00619 Up.Conf.Int. 1 Found 1 124 GAAAGG 129 (Mism.= 0) TFBS AC: RSP02188//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp31/VI /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 112 ACTTGACACAa 122 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 2 193 GAAGAAGAA 185 (Mism.= 0) 190 GAAGAAGAA 182 (Mism.= 0) TFBS AC: RSP02526//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 204 TTGTACTA 211 (Mism.= 0) TFBS AC: RSP02529//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 204 TTGTACTA 211 (Mism.= 0) TFBS AC: RSP02548//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YAB3/TFBS: WUS BS (AS2) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 80 ATTAATTG 87 (Mism.= 0) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 125 AAAGGCAA 132 (Mism.= 0) Totally 16 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0345..AC:J05570.1..OS:Arabidopsis thaliana..GENE:AHA2..PROD:H+-ATPase..[ -200: +51] ..CDS: +133..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.25 C - 0.20 TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00401 Up.Conf.Int. 1 Found 1 80 AATAAaAAgggTAATAAATA 99 (Mism.= 4) TFBS AC: RSP00471//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS1 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 130 aTGTGGGtCCC 120 (Mism.= 2) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00650 Up.Conf.Int. 1 Found 1 215 CtCCTCCTC 223 (Mism.= 1) TFBS AC: RSP00635//OS: soybean (Glycine max) /GENE: SAUR 15A/TFBS: NDE Box 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00220 Up.Conf.Int. 1 Found 1 125 GGTCCCAT 118 (Mism.= 0) TFBS AC: RSP00847//OS: maize (Zea mays) /GENE: H3C4/TFBS: NON /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 204 CCACCTaATC 213 (Mism.= 1) TFBS AC: RSP00935//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: CT element /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 220 CCTCTCCTTCtCTC 233 (Mism.= 1) TFBS AC: RSP01205//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 69 CCTCTTTAAG 60 (Mism.= 1) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 1 216 tcCTCCTCTCCtTCT 230 (Mism.= 3) TFBS AC: RSP01744//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCMPG1 (At3g02840)/TFBS: WRKY11 BS /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 47 ctTTGACCGTTG 36 (Mism.= 2) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 221 CTCTCctTCTCTCTaT 236 (Mism.= 3) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 214 TCTCCTCCtC 223 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0346..AC:X60115.1..ACOS:Arabidopsis thaliana..GENE:AHA3..PROD:H+-ATPase..[ -200: +51] ..CDS: +198..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.27 C - 0.18 TFBS AC: RSP00354//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 197 TAACGTAG 204 (Mism.= 0) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 68 AAAAAAGAGA 77 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 229 AAAAAAGAGA 220 (Mism.= 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 224 AGAGAGCAA 216 (Mism.= 1) TFBS AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Quant. Seq.) /BF: AT-Hook Proteins Motifs on "+" Strand: Mean Exp. Number 0.00769 Up.Conf.Int. 1 Found 1 92 gAATAAAATATT 103 (Mism.= 1) TFBS AC: RSP01703//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT2/DRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 145 CCGACGTCGC 154 (Mism.= 2) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00147 Up.Conf.Int. 1 Found 1 155 TGCgACGTcGGT 144 (Mism.= 2) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 185 CACCAAAT 192 (Mism.= 0) TFBS AC: RSP02830//OS: poplar (Poplus trichocarpa) /GENE: PtANR1/TFBS: MdMYB9 BS (PtANR1) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00197 Up.Conf.Int. 1 Found 1 211 TTCACtTGCT 220 (Mism.= 1) Totally 9 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0347..AC:X62395.1..OS:Nicotiana tabacum..GENE:ltp1..PROD:lipid transferase..[ -200: +51] ..CDS: +107..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.31 C - 0.23 TFBS AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GAGAGA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 12 GAGAGA 17 (Mism.= 0) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 185 TTAGGGTTT 177 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 177 AAACCCTAA 185 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 185 TTAGGGTTT 177 (Mism.= 0) TFBS AC: RSP00572//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: 3'/AT-rich J1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 58 ATATGTCA 65 (Mism.= 0) TFBS AC: RSP00802//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: Box A-1 /BF: BABF Motifs on "+" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 26 ATAaATATAaATcATATAAa 45 (Mism.= 4) TFBS AC: RSP01135//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: I-box-like sequence /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00631 Up.Conf.Int. 1 Found 1 245 AGATATAATAAAT 233 (Mism.= 2) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 104 TTTCAAAG 111 (Mism.= 0) TFBS AC: RSP02181//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp22/IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00062 Up.Conf.Int. 1 Found 1 78 cAACACGAGCtGA 90 (Mism.= 2) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 177 AAACCCTAA 185 (Mism.= 0) TFBS AC: RSP02927//OS: Medicago truncatula /GENE: UGT73F3/TFBS: N-box /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 79 aACACGAGCt 88 (Mism.= 2) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0348..AC:NM_128190.2..OS:Arabidopsis thaliana..GENE:ER (ERECTA; QRP1; T1D16.3; T1D16_3)..PROD:(ER) ERECTA..[ -200: +51] ..CDS: +123..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.35 C - 0.22 TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "-" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 133 AATgATTTTTATc 121 (Mism.= 2) TFBS AC: RSP00421//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 143 ACCGAGA 137 (Mism.= 0) TFBS AC: RSP00422//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP00444//OS: maize /GENE: cyPPDK1/TFBS: box d /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 184 AtaAAAGAAAGAAA 197 (Mism.= 2) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 150 aAAAAAaCAAAAaCAA 165 (Mism.= 3) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00892 Up.Conf.Int. 1 Found 1 166 TTTGtTTTTGTttTTT 151 (Mism.= 3) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 2 27 TTCTCTCTCCa 37 (Mism.= 1) 237 TTCTCTaTCCT 247 (Mism.= 1) TFBS AC: RSP00847//OS: maize (Zea mays) /GENE: H3C4/TFBS: NON /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00953 Up.Conf.Int. 1 Found 1 117 CCAtCaCATC 108 (Mism.= 2) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 189 AGAAAGAAA 197 (Mism.= 0) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00633 Up.Conf.Int. 1 Found 1 189 AGAAAGAAA 197 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00420 Up.Conf.Int. 1 Found 1 30 AGAAAGAGA 22 (Mism.= 0) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00633 Up.Conf.Int. 1 Found 1 189 AGAAAGAAA 197 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00260 Up.Conf.Int. 1 Found 1 26 AGAGAGAGA 18 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 36 GGAGAGAGA 28 (Mism.= 0) TFBS AC: RSP00888//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (2) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00709 Up.Conf.Int. 1 Found 1 198 AAAAATCTA 206 (Mism.= 0) TFBS AC: RSP00951//OS: maize (Zea mays) /GENE: stress tolerance-related genes/TFBS: DRE 1 /BF: ZmDREB1A Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP01009//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB1A/DREB2A BS /BF: DREB1A; DREB2A Motifs on "-" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP01010//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB2A BS /BF: DREB2A Motifs on "-" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP01036//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: DRE /BF: unknown BF Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP01085//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE2 /BF: HaDREB2 Motifs on "-" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 214 ACCGACATT 206 (Mism.= 1) TFBS AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic oligonucleotides/TFBS: ZPT2-2 BS 2 /BF: ZPT2-2 Motifs on "-" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 88 CAGT 85 --12-- 72 TGCT 69 (Mism.= 0/ 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 4 43 tAGAGAtgGAGAGAGAA 27 (Mism.= 3) 35 GAGAGAGAaAGAGAGAg 19 (Mism.= 2) 33 GAGAGAaAGAGAGAGAg 17 (Mism.= 2) 31 GAGAaAGAGAGAGAGtc 15 (Mism.= 3) TFBS AC: RSP01339//OS: Arabidopsis (Arabidopsis thaliana) /GENE: rd17/TFBS: DR1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 1) TFBS AC: RSP01548//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: DRE2 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP01564//OS: Pennisetum glaucum /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: WZF-1 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP01610//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP01763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: DRE /BF: TINY Motifs on "-" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP01771//OS: barley (Hordeum vulgare) /GENE: Synthetic oligonucleotids/TFBS: DRE/CRT /BF: HvDREB1 Motifs on "-" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP01779//OS: soybean (Glycine max L.) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP01806//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GT-2bx /BF: GmGT-2A; GmGT-2B Motifs on "-" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 101 TGGCGGaAATTtACaG 86 (Mism.= 3) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 31 CTCTCCAT 38 (Mism.= 0) TFBS AC: RSP01982//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 110 TGTGATG 116 (Mism.= 0) TFBS AC: RSP02142//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE2 /BF: DREB2C Motifs on "+" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 206 AATGTCGGTa 215 (Mism.= 1) TFBS AC: RSP02145//OS: dwarf apple, Malus baccata /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: MbDREB1 Motifs on "-" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP02298//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: AtERF11 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00420 Up.Conf.Int. 1 Found 1 239 GAAGAAGAA 231 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00284 Up.Conf.Int. 1 Found 9 15 gaCTCTCTCTCTtTCT 30 (Mism.= 3) 17 CTCTCTCTCTtTCTCT 32 (Mism.= 1) 19 CTCTCTCTtTCTCTCT 34 (Mism.= 1) 21 CTCTCTtTCTCTCTCc 36 (Mism.= 2) 23 CTCTtTCTCTCTCcaT 38 (Mism.= 3) 25 CTtTCTCTCTCcaTCT 40 (Mism.= 3) 27 tTCTCTCTCcaTCTCT 42 (Mism.= 3) 29 CTCTCTCcaTCTCTaT 44 (Mism.= 3) 31 CTCTCcaTCTCTaTCT 46 (Mism.= 3) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "+" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 185 taAAAGAAAGAA 196 (Mism.= 2) TFBS AC: RSP02570//OS: foxtail millet (Setaria italica) /GENE: SiWD40/TFBS: DRE /BF: SiAP2 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP02597//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCYS4/TFBS: DRE1 /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP02652//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DBE /BF: DREB (At2g23340, At5g52020); ERF (At4g23750) Motifs on "-" Strand: Mean Exp. Number 0.00035 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP02668//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: TaDREB2; TaDREB3 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP02677//OS: wild tomato (Solanum habrochaites) /GENE: Synthetic oligonucleotides/TFBS: CRT/DRE /BF: ShCBF1 Motifs on "-" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 215 TACCGACAT 207 (Mism.= 0) TFBS AC: RSP02855//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NCED9/TFBS: cDRE /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 214 ACCGAC 209 (Mism.= 0) TFBS AC: RSP02951//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/2 /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 93 TTTCCGCCA 101 (Mism.= 1) Totally 57 motifs of 44 different TFBSs have been found ____________________________________________________________ >PLPR0349..AC:X73676.1..OS:Arabidopsis thaliana..GENE:aha9..PROD:plasma memebrane H(+)-ATPase protein..[ -200: +51] ..CDS: +232..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.20 T - 0.36 C - 0.16 TFBS AC: RSP00006//OS: soybean (Glycine max) /GENE: GS15/TFBS: ATRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 215 AAATTATTTTtTAT 202 (Mism.= 1) TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 128 ACtCGcGTCCTC 139 (Mism.= 2) TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 128 ACtCGCgTCCTC 139 (Mism.= 2) TFBS AC: RSP00208//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,A /BF: MAT2 (ROM2) Motifs on "-" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 57 GCCACGTtAtCT 46 (Mism.= 2) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 35 AAgAAAGAGA 44 (Mism.= 1) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 36 AGAAAGAGA 44 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00915 Up.Conf.Int. 1 Found 3 36 AGAaAGAGA 44 (Mism.= 1) 40 AGAGAGAGA 48 (Mism.= 0) 42 AGAGAGAtA 50 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 40 aGAGAGAGA 48 (Mism.= 1) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "+" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 20 AttAGTTAGTTA 31 (Mism.= 2) TFBS AC: RSP00999//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 3'-III element /BF: 3AF3 Motifs on "-" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 35 TCACTAaCTAA 25 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00475 Up.Conf.Int. 1 Found 1 51 ACGTGGC 57 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00015 Up.Conf.Int. 1 Found 1 35 aAGAaAGAGAGAGAtAA 51 (Mism.= 3) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 50 aACGTGGC 57 (Mism.= 1) TFBS AC: RSP01864//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE2 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 50 AACGTGGC 57 (Mism.= 0) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 48 aTaACGTGGC 57 (Mism.= 2) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00223 Up.Conf.Int. 1 Found 1 148 GAAGAAGAA 140 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 51 tTaTCTCTCTCTtTCT 36 (Mism.= 3) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00475 Up.Conf.Int. 1 Found 1 51 ACGTGGC 57 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 57 GCCACGTtAtC 47 (Mism.= 2) TFBS AC: RSP02913//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 1 57 GcCACGTTAT 48 (Mism.= 1) Totally 22 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0350..AC:U83904.1..OS:Hordeum vulgare (subsp. vulgare)..GENE:LOX1 (lipoxygenase isoenzyme 1 of LOXA (Lox:Hv1)..PROD:lipoxygenase isoenzyme 1..[ -200: +51] ..CDS: +68..TSS:201 (+1) |Monocot Plan Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.27 T - 0.13 C - 0.33 TFBS AC: RSP00021//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box7 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 197 gAAAAGTgAAAA 208 (Mism.= 2) TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 173 AcGCAACACACAtC 186 (Mism.= 2) TFBS AC: RSP00316//OS: Lemna gibba /GENE: Lhcb2*1/TFBS: REalpha /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 231 AACCAA 226 (Mism.= 0) TFBS AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS5 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 231 AACCAATggC 222 (Mism.= 2) TFBS AC: RSP00399//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: ATF /BF: AP1-like leucine zipper factor Motifs on "+" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 32 GCACGTCA 39 (Mism.= 0) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 127 TATAAAT 133 (Mism.= 0) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 61 TcCACGTGCT 52 (Mism.= 1) TFBS AC: RSP00869//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: EM1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00743 Up.Conf.Int. 1 Found 1 196 TGaAAAGTG 204 (Mism.= 1) TFBS AC: RSP00884//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: AZM /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 32 GCACGTCA 39 (Mism.= 0) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "-" Strand: Mean Exp. Number 0.00371 Up.Conf.Int. 1 Found 1 41 GGTGACGTGcC 31 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 126 CTATAAATt 134 (Mism.= 1) TFBS AC: RSP01497//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS5 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 71 GCCGTCcGAT 80 (Mism.= 1) TFBS AC: RSP01498//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS5 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 71 GCCGTCcGAT 80 (Mism.= 1) TFBS AC: RSP01505//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 81 GATCGGACG 73 (Mism.= 0) TFBS AC: RSP01506//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: NonaLS /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 81 GATCGGACG 73 (Mism.= 0) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 207 TTTCACTT 200 (Mism.= 0) TFBS AC: RSP01635//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 87 CTCCAAAGCCG 97 (Mism.= 2) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 41 GGTGACGTGC 32 (Mism.= 0) TFBS AC: RSP01729//OS: Arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 41 GGTGACGTGCCC 30 (Mism.= 2) TFBS AC: RSP01829//OS: rice (Oryza sativa) /GENE: CYP703A3/TFBS: GAMYB BS (CYP703A3) /BF: GAMYB Motifs on "-" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 232 cAACCAAT 225 (Mism.= 1) TFBS AC: RSP01924//OS: snapdragon (Antirrhinum majus) /GENE: synthetic oligonucleotides/TFBS: bZIP911 BS 2 /BF: bZIP911 Motifs on "-" Strand: Mean Exp. Number 0.00094 Up.Conf.Int. 1 Found 1 41 GGTGACGTGCCC 30 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 135 CAATTTATAG 126 (Mism.= 1) TFBS AC: RSP02197//OS: tomato (Lycopersicon esculentum) /GENE: LeEXP1/TFBS: CArG (LeEXP1) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00065 Up.Conf.Int. 1 Found 1 135 CAATTTATAG 126 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 53 GCACGTGG 60 (Mism.= 0) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00476 Up.Conf.Int. 1 Found 1 63 aGCACGTCGC 72 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 127 TATAAATT 134 (Mism.= 1) TFBS AC: RSP02830//OS: poplar (Poplus trichocarpa) /GENE: PtANR1/TFBS: MdMYB9 BS (PtANR1) /BF: MdMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 61 TcCACGTGCT 52 (Mism.= 1) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "+" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 53 GCACGTGGAG 62 (Mism.= 0) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "+" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 53 GCACGTGGAG 62 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 126 CTATAAATTG 135 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 135 CAATTTATAG 126 (Mism.= 1) Totally 31 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0351..AC:AB008795.1..OS:Oryza sativa (indica cultivar-group)..GENE:waxy (Wxa allele)..PROD:waxy protein..[ -200: +51] ..CDS:+1308..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.27 T - 0.23 C - 0.29 TFBS AC: RSP00399//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: ATF /BF: AP1-like leucine zipper factor Motifs on "-" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 47 GCACGTCA 40 (Mism.= 0) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 26 aAAAAAcCAAAAGCAA 11 (Mism.= 2) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 9 TTTTGCTTTTggTTTt 24 (Mism.= 3) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00679 Up.Conf.Int. 1 Found 1 132 gGAGAGAGA 140 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 132 GGAGAGAGA 140 (Mism.= 0) TFBS AC: RSP00884//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: AZM /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 47 GCACGTCA 40 (Mism.= 0) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00407 Up.Conf.Int. 1 Found 1 82 GATGACATGC 73 (Mism.= 1) TFBS AC: RSP00935//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: CT element /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 130 CCTCTCCcTCCCgC 117 (Mism.= 2) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 197 TCTCACCAttCC 208 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 125 GAGAGgGgGAGAGAGAt 141 (Mism.= 3) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 165 CTAcAAATA 173 (Mism.= 1) TFBS AC: RSP02006//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 3 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 84 ACGATGACATgC 73 (Mism.= 1) TFBS AC: RSP02142//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE2 /BF: DREB2C Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 1 AAaGTCGGTT 10 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 3 141 aTCTCTCTCcCcCTCT 126 (Mism.= 3) 139 CTCTCTCcCcCTCTCc 124 (Mism.= 3) 137 CTCTCcCcCTCTCcCT 122 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 120 GGAGGGAGAG 129 (Mism.= 1) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 194 CTCTCTCAC 202 (Mism.= 0) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 174 CTATTTGTAG 165 (Mism.= 1) Totally 19 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0352..AC:X07014..OS:Pisum sativum..GENE:legJ..PROD:legumin..[ -200: +51] ..CDS: +55..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.14 T - 0.31 C - 0.27 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 9 TtTGGaTATATA 20 (Mism.= 2) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 107 CATGCATG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 114 CATGCATG 107 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00854 Up.Conf.Int. 1 Found 1 141 ACACGTG 147 (Mism.= 0) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 149 AaCACGTGTg 140 (Mism.= 2) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 106 CCATGCATGC 115 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 115 GCATGCATGg 106 (Mism.= 1) TFBS AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE III /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 114 CATGCaTGGC 105 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 107 CATGCATG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 114 CATGCATG 107 (Mism.= 0) TFBS AC: RSP01170//OS: GlVicia faba /GENE: PsLegB/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 99 TCCATAGCCATGCATGCTGAAcAATG 124 (Mism.= 1) TFBS AC: RSP01171//OS: soybean (Glycine max) /GENE: GmGly/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 99 TCCATAGCCATGCATgCTGAAcAATG 124 (Mism.= 2) TFBS AC: RSP01172//OS: pea (Pisum sativum) /GENE: PsLegA/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 99 TCCATAGCCATGCAtGCTGaAcAATG 124 (Mism.= 3) TFBS AC: RSP01173//OS: pea (Pisum sativum) /GENE: PsLegJ/TFBS: CATGCATG-like motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 100 cCaTAGCCATGCATGCTGAACAATG 124 (Mism.= 2) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 141 ACACGTGT 148 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 148 ACACGTGT 141 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 107 CATGCATG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 114 CATGCATG 107 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 139 TCACAcGTGT 148 (Mism.= 1) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 150 GaACACGTGTgA 139 (Mism.= 2) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 139 TCACACGTGTtc 150 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 150 gaACACGTGTGA 139 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 140 CACACGTGTT 149 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 149 aACACGTGTg 140 (Mism.= 2) TFBS AC: RSP01910//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Inr 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 50 TTCAtTCATTc 40 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00646 Up.Conf.Int. 1 Found 1 149 AaCACGTGTg 140 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 140 cACACGTGTt 149 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 149 AACACGTGTG 140 (Mism.= 1) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 149 AACACGTGTG 140 (Mism.= 2) TFBS AC: RSP02222//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC-lke box /BF: ORA59 Motifs on "-" Strand: Mean Exp. Number 0.00415 Up.Conf.Int. 1 Found 1 58 GtAGCCGCT 50 (Mism.= 1) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00713 Up.Conf.Int. 1 Found 1 109 TGCATGCTG 117 (Mism.= 1) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "-" Strand: Mean Exp. Number 0.00108 Up.Conf.Int. 1 Found 1 150 GAACACGTGTGA 139 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 141 ACACGTGT 148 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 148 ACACGTGT 141 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 140 caCACGTGTT 149 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 1 140 CACACGTGTt 149 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00859 Up.Conf.Int. 1 Found 1 149 aACACGTGTg 140 (Mism.= 2) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 141 ACACGTGTTc 150 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 140 cACACGTGTT 149 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 149 aACACGTGTg 140 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00233 Up.Conf.Int. 1 Found 1 140 cACACGTGTT 149 (Mism.= 1) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 107 CATGCATG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 114 CATGCATG 107 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 107 CATGCATG 114 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 114 CATGCATG 107 (Mism.= 0) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 149 AACACGTGTG 140 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 140 CaCACGTGtT 149 (Mism.= 2) Totally 47 motifs of 34 different TFBSs have been found ____________________________________________________________ >PLPR0353..AC:X05350.1..OS:Petroselinum crispum..GENE:Pc4CL1..PROD:4-coumarate CoA ligase..[ -200: +51] ..CDS: +78..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.04 T - 0.30 C - 0.35 TFBS AC: RSP00459//OS: coix /GENE: alpha-coixin/TFBS: O2u /BF: O2 Motifs on "-" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 28 TTGACTAaGA 19 (Mism.= 1) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 121 AAtATGAGGTTTGgT 107 (Mism.= 2) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 183 GAaTTGttCATCATC 197 (Mism.= 3) TFBS AC: RSP00949//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: TAGTCAAC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 22 TAGTCAAC 29 (Mism.= 0) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00143 Up.Conf.Int. 1 Found 1 64 CTCACCAACCC 74 (Mism.= 0) TFBS AC: RSP01037//OS: parsley, Petroselinum crispum /GENE: 4CL1/TFBS: FP56 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00636 Up.Conf.Int. 1 Found 1 90 TCCCCATTTTACCCCT 105 (Mism.= 0) TFBS AC: RSP01038//OS: parsley, Petroselinum crispum /GENE: 4CL1/TFBS: FP7 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 121 TCCGATAAACTCCCCCTTTACCA 143 (Mism.= 0) TFBS AC: RSP01042//OS: potato (Solanum tuberosum) /GENE: St4cl-1/TFBS: FP1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 35 CCCTTCATCACCTAAC 50 (Mism.= 0) TFBS AC: RSP01043//OS: potato (Solanum tuberosum) /GENE: St4cl-1/TFBS: FP2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 63 TCTCACCAACCCC 75 (Mism.= 0) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 63 TCTCACCAACCc 74 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 63 TCTCACCAACCC 74 (Mism.= 0) TFBS AC: RSP01389//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: 4cl-CMA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 98 TTACCCCTAACCAAACCTCATATTCCGATAAACTCCCCCTTTACCAACCCC 148 (Mism.= 0) TFBS AC: RSP01391//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: 4cl-CMA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 39 TCATCACCTAACAC 52 --10-- 63 TCTCACCAACCCCA 76 (Mism.= 0/ 0) TFBS AC: RSP01392//OS: potato (Solanum tuberosum) /GENE: 4CL-1/TFBS: 4cl-CMA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 39 TCATCACCTAACAC 52 --10-- 63 TCTCACCAACCCCA 76 (Mism.= 2/ 1) TFBS AC: RSP01478//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 95 ATTTtAcCCCtAACC 109 (Mism.= 3) TFBS AC: RSP02098//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE4 /BF: tomato HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00633 Up.Conf.Int. 1 Found 1 191 GAACAATTC 183 (Mism.= 1) TFBS AC: RSP02186//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp29/V /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 231 TTTcAACaCCAAA 243 (Mism.= 2) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 210 TTCTTACA 203 (Mism.= 1) TFBS AC: RSP02520//OS: rice (Oryza sativa, japonica) /GENE: OsChia4a/TFBS: E2-box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 2 CaTCACATGCTg 13 (Mism.= 2) TFBS AC: RSP02701//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-1 /BF: HvHsfB2c Motifs on "-" Strand: Mean Exp. Number 0.00357 Up.Conf.Int. 1 Found 1 190 AAcAATTCaAC 180 (Mism.= 2) TFBS AC: RSP02930//OS: maize (Zea mays) /GENE: GRMZM2G138689/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 198 TaACATGTAA 207 (Mism.= 1) Totally 21 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0354..AC:X05351.1..OS:Petroselinum crispum..GENE:Pc4CL2..PROD:4-coumarate CoA ligase..[ -200: +51] ..CDS: +78..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.04 T - 0.30 C - 0.35 TFBS AC: RSP00459//OS: coix /GENE: alpha-coixin/TFBS: O2u /BF: O2 Motifs on "-" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 28 TTGACTAaGA 19 (Mism.= 1) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 121 AAtATGAGGTTTGgT 107 (Mism.= 2) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00558 Up.Conf.Int. 1 Found 1 183 GAaTTGttCATCATC 197 (Mism.= 3) TFBS AC: RSP00949//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: TAGTCAAC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 22 TAGTCAAC 29 (Mism.= 0) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 64 CTCACCAACCC 74 (Mism.= 0) TFBS AC: RSP01037//OS: parsley, Petroselinum crispum /GENE: 4CL1/TFBS: FP56 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 90 TCCCCATTTTACCCCT 105 (Mism.= 0) TFBS AC: RSP01038//OS: parsley, Petroselinum crispum /GENE: 4CL1/TFBS: FP7 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 121 TCCGATAAACTCCCCCTTTACCA 143 (Mism.= 0) TFBS AC: RSP01043//OS: potato (Solanum tuberosum) /GENE: St4cl-1/TFBS: FP2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00297 Up.Conf.Int. 1 Found 1 63 TCTCACCAACCCC 75 (Mism.= 0) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 63 TCTCACCAACCc 74 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00861 Up.Conf.Int. 1 Found 1 63 TCTCACCAACCC 74 (Mism.= 0) TFBS AC: RSP01389//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: 4cl-CMA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 98 TTACCCCTAACCAAACCTCATATTCCGATAAACTCCCCCTTTACCAACCCC 148 (Mism.= 0) TFBS AC: RSP01391//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: 4cl-CMA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 39 TCATCACCTAACAC 52 --10-- 63 TCTCACCAACCCCA 76 (Mism.= 0/ 0) TFBS AC: RSP01392//OS: potato (Solanum tuberosum) /GENE: 4CL-1/TFBS: 4cl-CMA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 39 TCATCACCTAACAC 52 --10-- 63 TCTCACCAACCCCA 76 (Mism.= 2/ 1) TFBS AC: RSP01478//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 95 ATTTtAcCCCtAACC 109 (Mism.= 3) TFBS AC: RSP02098//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE4 /BF: tomato HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 191 GAACAATTC 183 (Mism.= 1) TFBS AC: RSP02186//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp29/V /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 231 TTTcAACaCCAAA 243 (Mism.= 2) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 210 TTCTTACA 203 (Mism.= 1) TFBS AC: RSP02520//OS: rice (Oryza sativa, japonica) /GENE: OsChia4a/TFBS: E2-box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00289 Up.Conf.Int. 1 Found 1 2 CaTCACATGCTg 13 (Mism.= 2) TFBS AC: RSP02701//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-1 /BF: HvHsfB2c Motifs on "-" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 190 AAcAATTCaAC 180 (Mism.= 2) TFBS AC: RSP02776//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL6 BS /BF: NTL6 Motifs on "-" Strand: Mean Exp. Number 0.00265 Up.Conf.Int. 1 Found 1 212 TTTTCTTA 205 (Mism.= 0) TFBS AC: RSP02930//OS: maize (Zea mays) /GENE: GRMZM2G138689/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 198 TaACATGTAA 207 (Mism.= 1) Totally 21 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0355..AC:X64257.1..OS:Brassica napus..GENE:Bp10..PROD:protein homologous to ascorbate oxidase..[ -200: +51] ..CDS: +64..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.50 G - 0.15 T - 0.18 C - 0.18 TFBS AC: RSP00080//OS: arabidopsis (Arabidopsis thaliana) /GENE: STE2; other genes/TFBS: AGAMOUS MADS BS /BF: MADS domain of AGAMOUS DNA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00303 Up.Conf.Int. 1 Found 1 94 TTcCCAAATATGGAAA 109 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00303 Up.Conf.Int. 1 Found 1 109 TTTCCATATTTGGgAA 94 (Mism.= 1) TFBS AC: RSP00085//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGL3-BE /BF: AGL3 Motifs on "+" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 94 TTcCCAAATATGGAAA 109 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 109 TTTCCATATTTGGgAA 94 (Mism.= 1) TFBS AC: RSP00228//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00461 Up.Conf.Int. 1 Found 1 186 AgCATTTTCACa 197 (Mism.= 2) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "-" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 12 GTTTCCATG 4 (Mism.= 0) TFBS AC: RSP01438//OS: Agrobacterium rhizogenes /GENE: rolC/TFBS: 13 bp RE /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 45 TTAAGAGAaaCTA 57 (Mism.= 2) TFBS AC: RSP02088//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 186 AgCATTTTCAC 196 (Mism.= 1) TFBS AC: RSP02198//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 009F/TFBS: CArG (009F) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00892 Up.Conf.Int. 1 Found 1 73 CTATTATTAG 64 (Mism.= 1) Totally 9 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0356..AC:X63339.1..OS:Sesbania rostrata..GENE:Enod2..PROD:nodulin..[ -200: +51] ..CDS: +23..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.34 C - 0.21 TFBS AC: RSP00202//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE GRA /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 153 CATGCCcCC 161 (Mism.= 1) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 196 CGTCCATcCAT 206 (Mism.= 1) TFBS AC: RSP00356//OS: tobacco (Nicotiana tabacum) /GENE: EAS4/TFBS: TAC box /BF: TacBBF (TAC box binding factor) Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 230 tCTCTACAcTACTC 243 (Mism.= 2) TFBS AC: RSP00859//OS: maize (Zea mays) /GENE: H4C7/TFBS: GACTGGCTCC motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 173 tACTGGCTCC 182 (Mism.= 1) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "+" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 154 ATGCCCCcCA 163 (Mism.= 1) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 123 AaGATtGATGA 133 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP02514//OS: tomato (Solanum lycopersicum) /GENE: SlHsp26.1-P/TFBS: HSE (SlHsp26.1-P) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 103 AaGATaTTTCGA 92 (Mism.= 2) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0357..AC:AF081457.1..OS:Pisum sativum..GENE:rcpme1..PROD:pectin methylesterase..[ -200: +51] ..CDS: +21..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.16 T - 0.32 C - 0.13 TFBS AC: RSP01139//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 96 AtGTGGTTT 88 (Mism.= 1) TFBS AC: RSP01182//OS: pea (Pisum sativum) /GENE: GS3A/TFBS: GS3A-F1 BS /BF: GS3A-F1 Motifs on "+" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 164 TTGATCaAGTAtAcAAA 180 (Mism.= 3) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00580 Up.Conf.Int. 1 Found 1 91 CCACATGC 98 (Mism.= 1) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 94 GTGGTTTTCA 85 (Mism.= 2) TFBS AC: RSP02525//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 61 ATGTACTA 54 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0358..AC:NM_127738.2..OS:Arabidopsis thaliana..GENE:Atgrp7 (F2G1.4; GRP7)..PROD:glycine-rich RNA-binding protein..[ -200: +51] ..CDS: +58..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.11 T - 0.30 C - 0.27 TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "-" Strand: Mean Exp. Number 0.00815 Up.Conf.Int. 1 Found 1 47 CACgTGaCACT 37 (Mism.= 2) TFBS AC: RSP00892//OS: Solanum melongena /GENE: SmCP/TFBS: EE 2 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 149 TTAATATCT 157 (Mism.= 0) TFBS AC: RSP00947//OS: rice (Oryza sativa), Oryza sativa /GENE: PHYA/TFBS: GT1-bx /BF: GT-2 Motifs on "+" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 147 GGTTAAT 153 (Mism.= 0) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 40 GTCACGTGat 49 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 49 aTCACGTGaC 40 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 40 GtCACGTGAT 49 (Mism.= 1) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 40 gTCACGTGaT 49 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 49 ATCACGTGac 40 (Mism.= 2) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00938 Up.Conf.Int. 1 Found 1 21 CAAATGGAaA 12 (Mism.= 1) TFBS AC: RSP01435//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: BoxII /BF: RNFG2 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 53 TCCCCAACCA 62 (Mism.= 0) TFBS AC: RSP01699//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At2g21640/UPOX/TFBS: CARE B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 43 ACGTGAT 49 (Mism.= 0) TFBS AC: RSP01713//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PIN1 (At1g73590)/TFBS: C/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 104 aTtCACGTAAAC 115 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 49 ATCACGTGAC 40 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 49 AtCACGTGAC 40 (Mism.= 1) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 131 AAAATATCT 139 (Mism.= 0) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00837 Up.Conf.Int. 1 Found 1 41 tCACGTGA 48 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 40 GtCACGTGaT 49 (Mism.= 2) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00073 Up.Conf.Int. 1 Found 1 47 CACGTGAC 40 (Mism.= 0) TFBS AC: RSP02631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR2/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 130 GAAAATATCTAAA 142 (Mism.= 0) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 131 AAAATATCT 139 (Mism.= 0) TFBS AC: RSP02656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "+" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 131 AAAATATCT 139 (Mism.= 0) TFBS AC: RSP02657//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EEext /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 123 AAACCTAGAAAATATCTAAACCTTGgt 149 (Mism.= 2) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 131 AAAATATCT 139 (Mism.= 0) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 139 AGATATTTT 131 (Mism.= 0) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 139 AGATATTTT 131 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 40 GtCACGTGAt 49 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 49 atCACGTGAC 40 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 49 AtCACGTGaC 40 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 40 GtCACGTGAT 49 (Mism.= 1) TFBS AC: RSP02912//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 40 GtCACGtGAT 49 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 40 gTCACGTGaT 49 (Mism.= 2) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 49 aTCACGTGaC 40 (Mism.= 2) Totally 32 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0359..AC:AB097088.1..OS:Glycine max..GENE:GmPEPC7..PROD:phosphoenolpyruvate carboxylase..[ -200: +51] ..CDS: +441..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.31 C - 0.17 TFBS AC: RSP00434//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF-1beta/TFBS: TFIIIA-box /BF: TFIIIA Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 34 CTGGAcTGAAGgA 46 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 219 AGAGAGATA 211 (Mism.= 1) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 92 AaTTAGGTTC 101 (Mism.= 1) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 48 AGAATCTT 55 (Mism.= 0) TFBS AC: RSP01631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZCP4/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00796 Up.Conf.Int. 1 Found 1 61 CTTAAAAGCAT 71 (Mism.= 2) TFBS AC: RSP01632//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At5g51890/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 61 CTTAAAAGCAT 71 (Mism.= 1) TFBS AC: RSP01634//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At3g62160/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 13 CTTCAATGCGA 3 (Mism.= 1) TFBS AC: RSP01635//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 13 CTTCAATGCGA 3 (Mism.= 2) TFBS AC: RSP01638//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGP/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 61 CTTAAAAGCAT 71 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 1 13 CTTCAATGCGA 3 (Mism.= 2) TFBS AC: RSP01642//OS: tobacco (Nicotiana tabacum) /GENE: WIPK/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 150 AAATGTCTCt 159 (Mism.= 1) TFBS AC: RSP01725//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00935 Up.Conf.Int. 1 Found 1 140 AGgCACGTAAAA 151 (Mism.= 1) TFBS AC: RSP01979//OS: Arabidopsis (Arabidopsis thaliana) /GENE: EBF2/TFBS: EIN3 BS2 /BF: EIN3 Motifs on "+" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 23 ATGTATAC 30 (Mism.= 0) TFBS AC: RSP02209//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: P1BS (SmPT4) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00432 Up.Conf.Int. 1 Found 1 68 GCATATTC 75 (Mism.= 0) TFBS AC: RSP02296//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 140 AGgCACGTAAaA 151 (Mism.= 2) TFBS AC: RSP02732//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS1/TFBS: P1BS /BF: PHR1 Motifs on "+" Strand: Mean Exp. Number 0.00223 Up.Conf.Int. 1 Found 1 67 aGCATATTCC 76 (Mism.= 1) TFBS AC: RSP02733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS3/TFBS: P1BS /BF: PHR1 Motifs on "-" Strand: Mean Exp. Number 0.00432 Up.Conf.Int. 1 Found 1 75 GAATATGC 68 (Mism.= 0) Totally 17 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0360..AC:AB097087.1..OS:Glycine max..GENE:GmPEPC15..PROD:phosphoenolpyruvate carboxylase..[ -200: +51] ..CDS: +431..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.30 C - 0.20 TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 205 gTTGTGaTCTTAA 193 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 218 AGAGAGAGA 210 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 218 aGAGAGAGA 210 (Mism.= 1) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "+" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 92 AaTTAGGTTC 101 (Mism.= 1) TFBS AC: RSP01642//OS: tobacco (Nicotiana tabacum) /GENE: WIPK/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00558 Up.Conf.Int. 1 Found 1 150 AAATGTCTCt 159 (Mism.= 1) TFBS AC: RSP02209//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: P1BS (SmPT4) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 67 GCATATTC 74 (Mism.= 0) TFBS AC: RSP02525//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 12 ATGTACTA 19 (Mism.= 0) TFBS AC: RSP02732//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS1/TFBS: P1BS /BF: PHR1 Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 66 aGCATATTCC 75 (Mism.= 1) TFBS AC: RSP02733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS3/TFBS: P1BS /BF: PHR1 Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 74 GAATATGC 67 (Mism.= 0) TFBS AC: RSP02762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS2 (MYB58) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00820 Up.Conf.Int. 1 Found 1 27 TACCAACT 34 (Mism.= 0) TFBS AC: RSP02763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS1 (MYB63) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00820 Up.Conf.Int. 1 Found 1 27 TACCAACT 34 (Mism.= 0) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0361..AC: Y09417..OS:Catharanthus roseus..GENE:cpr..PROD:NADPH:cytochrome P-450 reductase..[ -200: +51] ..CDS: +284 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.33 C - 0.24 TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00048 Up.Conf.Int. 1 Found 1 112 CCCACCTAaC 103 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 56 CCACGaGGCC 65 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 56 CCACGaGGCC 65 (Mism.= 1) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00048 Up.Conf.Int. 1 Found 1 112 CCCACCTAaC 103 (Mism.= 1) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 1 tAAttAGCAAAAGCAA 16 (Mism.= 3) TFBS AC: RSP00597//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: GT-1/16 JJ1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00104 Up.Conf.Int. 1 Found 1 93 GTTAATTgGTGT 104 (Mism.= 1) TFBS AC: RSP00651//OS: maize (Zea mays) /GENE: a1/TFBS: C1 PBS/P /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00755 Up.Conf.Int. 1 Found 1 136 gCCTACCAAaC 126 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00709 Up.Conf.Int. 1 Found 1 145 TTCTCTCTgCT 155 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 164 AGAGAGAGA 156 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 166 GGAGAGAGA 158 (Mism.= 0) TFBS AC: RSP01008//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 3 (AC-III) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 109 ACCTAAC 103 (Mism.= 0) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 113 ACcCACCTAaCA 102 (Mism.= 2) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00368 Up.Conf.Int. 1 Found 1 111 CCAcCTAACaCC 100 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00145 Up.Conf.Int. 1 Found 1 161 GAGAGAagcAGAGAGAA 145 (Mism.= 3) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "-" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 69 CTGGGgCCTCg 59 (Mism.= 2) TFBS AC: RSP01455//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-III /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 109 ACCTAAC 103 (Mism.= 0) TFBS AC: RSP01821//OS: tobacco (Nicotiana tabacum) /GENE: Pr-1a/TFBS: MBSII box /BF: Myb1 Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 126 GTTTGGT 132 (Mism.= 0) TFBS AC: RSP02018//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBa /BF: MYB Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 110 CACCTAaC 103 (Mism.= 1) TFBS AC: RSP02097//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE3 /BF: tomato HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 27 TTTTAGAAAATTT 15 (Mism.= 2) TFBS AC: RSP02253//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Ep5C/TFBS: MBSII /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 103 GTTAGGT 109 (Mism.= 0) TFBS AC: RSP02254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Ep5C/TFBS: H box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00999 Up.Conf.Int. 1 Found 1 135 CCTACC 130 (Mism.= 0) TFBS AC: RSP02329//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 3 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 132 ACCAAAC 126 (Mism.= 0) TFBS AC: RSP02333//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 7 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 109 ACCTAAC 103 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 2 147 CTCTCTgctTCTCTCT 162 (Mism.= 3) 149 CTCTgctTCTCTCTCT 164 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 166 GGAGAGAGAG 157 (Mism.= 0) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "-" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 1 40 TGGAATTTTT 31 (Mism.= 0) TFBS AC: RSP02701//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-1 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 31 AAAAATTCCAt 41 (Mism.= 1) TFBS AC: RSP02750//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX14/TFBS: MYB46 BS (IRX14) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 133 TACCAAAC 126 (Mism.= 0) TFBS AC: RSP02758//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS1 (CCR1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 110 CACCTAAC 103 (Mism.= 0) TFBS AC: RSP02761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS1 (MYB58) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 133 TACCAAAC 126 (Mism.= 0) TFBS AC: RSP02811//OS: Eucalyptus gunnii /GENE: EgCCR/TFBS: AC element (EgCCR) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 103 GTTAGGTG 110 (Mism.= 1) TFBS AC: RSP02812//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 1 (EgCAD) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 103 GTTAGGTG 110 (Mism.= 1) TFBS AC: RSP02894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 110 CACCTAAC 103 (Mism.= 0) TFBS AC: RSP02905//OS: rice (Oryza sativa) /GENE: Os02t0467500/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 109 ACCTAAC 103 (Mism.= 0) TFBS AC: RSP02920//OS: Medicago truncatula /GENE: CYP93E2/TFBS: N-box /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 2 55 ACCACGAGGc 64 (Mism.= 1) 242 AaCACGAGaG 251 (Mism.= 2) TFBS AC: RSP02922//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 2 251 CTCTCGTGtT 242 (Mism.= 1) 64 gcCTCGTGGT 55 (Mism.= 2) TFBS AC: RSP02944//OS: maize (Zea mays) /GENE: RLK/TFBS: RS2 BS /BF: RS2 Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 116 CAAACCcACC 107 (Mism.= 1) Totally 40 motifs of 37 different TFBSs have been found ____________________________________________________________ >PLPR0362..AC:AJ225121.1..OS:Pinus sylvestris..GENE:gln1a..PROD:glutamine synthethase..[ -200: +51] ..CDS: +181..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.25 C - 0.28 TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 34 ATCcACAACC 25 (Mism.= 1) TFBS AC: RSP01458//OS: soybean (Glycine max) /GENE: BiP9/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 47 ATTTAAgAtTTTA 35 (Mism.= 2) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 20 TCcCATGTGT 11 (Mism.= 1) TFBS AC: RSP01755//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS1 /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 134 CAACCACC 141 (Mism.= 0) TFBS AC: RSP01757//OS: soybean (Glycine max) /GENE: a2/TFBS: BBS /BF: B Motifs on "+" Strand: Mean Exp. Number 0.00368 Up.Conf.Int. 1 Found 1 53 GTCAAGAC 60 (Mism.= 0) TFBS AC: RSP01819//OS: tobacco (Nicotiana tabacum) /GENE: Pr-1a/TFBS: WK box /BF: NtWRKY12 Motifs on "+" Strand: Mean Exp. Number 0.00633 Up.Conf.Int. 1 Found 1 102 TTTTCCAC 109 (Mism.= 0) TFBS AC: RSP02895//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00743 Up.Conf.Int. 1 Found 1 33 tCCACAACC 25 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0363..AC:AF129073.1..OS:Prunus persica..GENE:ACO1..PROD:1-aminocyclopropane-1-carboxylate oxidase..[ -200: +51] ..CDS: +83..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.14 T - 0.31 C - 0.27 TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 126 ttTATTTTTATT 137 (Mism.= 2) TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00141 Up.Conf.Int. 1 Found 1 143 gAcAAgAATAAaAATAAATA 124 (Mism.= 4) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 126 ttTATTTTTATT 137 (Mism.= 2) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "+" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 125 AtTTATTTTTATT 137 (Mism.= 1) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "+" Strand: Mean Exp. Number 0.00767 Up.Conf.Int. 1 Found 1 117 tTTAttTTATTTATTT 132 (Mism.= 3) TFBS AC: RSP00441//OS: maize /GENE: cyPPDK1/TFBS: box a /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 232 AACAAAGTGT 223 (Mism.= 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 171 TATAAATACCAc 182 (Mism.= 1) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 245 CCtCTCCTC 237 (Mism.= 1) TFBS AC: RSP01174//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 1 /BF: Zmhox1a Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 245 CCTCTCCtcTC 235 (Mism.= 2) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "-" Strand: Mean Exp. Number 0.00958 Up.Conf.Int. 1 Found 1 25 CCAGAGGC 18 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 170 CTATAAATA 178 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00104 Up.Conf.Int. 1 Found 1 170 CTATAAATAC 179 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00104 Up.Conf.Int. 1 Found 1 170 CTATAAATAC 179 (Mism.= 0) TFBS AC: RSP01635//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 11 CTACAAAGCCT 21 (Mism.= 2) TFBS AC: RSP02097//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE3 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00063 Up.Conf.Int. 1 Found 1 32 TTTTGGAATTTTT 44 (Mism.= 2) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00031 Up.Conf.Int. 1 Found 1 35 TGGAATTTTT 44 (Mism.= 0) TFBS AC: RSP02701//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-1 /BF: HvHsfB2c Motifs on "-" Strand: Mean Exp. Number 0.00163 Up.Conf.Int. 1 Found 1 44 AAAAATTCCAa 34 (Mism.= 1) TFBS AC: RSP02748//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 2 (IRX8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 188 CACCAAAC 195 (Mism.= 0) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "-" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 239 CTCTCTCAa 231 (Mism.= 1) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 1 GTGGGCCA 8 (Mism.= 1) Totally 20 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0364..AC:AF030859.1..OS:Malus domestica..GENE:ACC oxidase..PROD:1-aminocyclopropane-1-carboxylate (ACC) oxidase..[ -200: +51] ..CDS: +90..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.34 C - 0.18 TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 39 CCACTTG 45 (Mism.= 0) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 38 TCCACTTGT 46 (Mism.= 0) TFBS AC: RSP01819//OS: tobacco (Nicotiana tabacum) /GENE: Pr-1a/TFBS: WK box /BF: NtWRKY12 Motifs on "+" Strand: Mean Exp. Number 0.00620 Up.Conf.Int. 1 Found 1 35 TTTTCCAC 42 (Mism.= 0) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "-" Strand: Mean Exp. Number 0.00737 Up.Conf.Int. 1 Found 1 37 AAAAAGAAA 29 (Mism.= 0) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 168 ATTTTTTTAT 159 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00923 Up.Conf.Int. 1 Found 1 212 CAATTTATAG 203 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "+" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 39 CCACTTG 45 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00923 Up.Conf.Int. 1 Found 1 203 CTATAAATTG 212 (Mism.= 1) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0365..AC:AF031233.1..OS:Malus domestica..GENE:polygalacturonase (MdPG)..PROD:polygalacturonase..[ -200: +51] ..CDS: +272..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.22 C - 0.30 TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "+" Strand: Mean Exp. Number 0.00896 Up.Conf.Int. 1 Found 1 46 AaGTCATAGA 55 (Mism.= 1) TFBS AC: RSP00333//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: S2 /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00971 Up.Conf.Int. 1 Found 1 39 CCATgCATT 31 (Mism.= 1) TFBS AC: RSP00366//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: ERE /BF: TDBA12 Motifs on "-" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 51 TGACTTTCTGcg 40 (Mism.= 2) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00946 Up.Conf.Int. 1 Found 1 221 CAAGTGaTGaTG 210 (Mism.= 2) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 170 TATAAATACCAa 181 (Mism.= 1) TFBS AC: RSP00897//OS: Bean yellow dwarf virus (Mastrevirus) /GENE: Intergenic Region/TFBS: PAL04 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 62 AAaGACaTCATTT 74 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00104 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00104 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 33 TGCATGGCG 41 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0366..AC:AB020745 AP000372..OS:Arabidopsis thaliana..GENE:TGG3..PROD:myrosinase..[ -200: +51] ..CDS: +56..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.35 C - 0.18 TFBS AC: RSP00155//OS: cucumber (Cucumis sativus) /GENE: hpr-A/TFBS: 13 bp CytRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00367 Up.Conf.Int. 1 Found 1 191 AAGtTTaATTGAG 203 (Mism.= 2) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 2 81 GAATCCATG 89 (Mism.= 0) 214 GTTTCCATG 222 (Mism.= 0) TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00495 Up.Conf.Int. 1 Found 1 223 CAGCTGA 229 (Mism.= 0) TFBS AC: RSP01048//OS: arabidopsis (Arabidopsis thaliana) /GENE: CPC/TFBS: WBSI /BF: WER Motifs on "-" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 1 192 TTTAAAAgAAGaAGTTtTtG 173 (Mism.= 4) TFBS AC: RSP01107//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: rGC /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00063 Up.Conf.Int. 1 Found 1 91 aTCATGGaTtCCTATA 76 (Mism.= 3) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 215 TTTCCATGcAGc 226 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 215 TTTCCATGcAGc 226 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 215 TTTCCATGcAGc 226 (Mism.= 2) TFBS AC: RSP01766//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: RY /BF: FUSCA3 Motifs on "+" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 216 TTCCATGCAGCtGa 229 (Mism.= 2) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 123 CTATTTAAGG 132 (Mism.= 1) Totally 11 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0367..AC:AF031235.1..OS:Triticum aestivum..GENE:wcs120..PROD:cold specific protein..[ -200: +51] ..CDS: +82..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.21 T - 0.20 C - 0.37 TFBS AC: RSP00295//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CC", comp) /BF: At-TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 94 TGGGCT 99 --14-- 114 tGCCCA 119 (Mism.= 1/ 1) Motifs on "-" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 119 TGGGCA 114 --14-- 99 aGCCCA 94 (Mism.= 1/ 1) TFBS AC: RSP00296//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CT", comp) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 94 TGGGCT 99 --14-- 114 tGCCCA 119 (Mism.= 0/ 1) Motifs on "-" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 119 TGGGCA 114 --14-- 99 AGCCCA 94 (Mism.= 1/ 0) TFBS AC: RSP00297//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II/telo-box (motifs 1 & 2) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 94 TGGGCT 99 --14-- 114 tGCCCA 119 (Mism.= 1/ 1) Motifs on "-" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 119 TGGGCA 114 --14-- 99 aGCCCA 94 (Mism.= 1/ 1) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00420 Up.Conf.Int. 1 Found 1 167 TATAAAT 173 (Mism.= 0) TFBS AC: RSP01206//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EL1 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 30 CCACTGATGCGA 41 (Mism.= 2) TFBS AC: RSP01211//OS: Lepidium africanum /GENE: LaCRC/TFBS: EL1 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 30 CCACTGATGCGA 41 (Mism.= 2) TFBS AC: RSP01216//OS: Brassica oleracea /GENE: BoCRC/TFBS: EL1 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 30 CCACTGATGCGA 41 (Mism.= 2) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "-" Strand: Mean Exp. Number 0.00200 Up.Conf.Int. 1 Found 1 164 CCGTTGGAG 156 (Mism.= 0) TFBS AC: RSP01260//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS7 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 51 CTACGTGT 44 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00440 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00440 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01890//OS: Boea hygrometrica /GENE: BhGolS1/TFBS: W-box 1 /BF: BhWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 75 ATCTGACCAG 84 (Mism.= 1) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 43 CACACGTAgC 52 (Mism.= 1) TFBS AC: RSP02210//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: P1BS (SmPT5) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 187 GCATATGC 194 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 194 GCATATGC 187 (Mism.= 0) TFBS AC: RSP02213//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: P1BS (NtPT5) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 187 GCATATGC 194 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 194 GCATATGC 187 (Mism.= 0) TFBS AC: RSP02216//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: ACE1 (FHY1) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 44 ACACGTAG 51 (Mism.= 0) TFBS AC: RSP02684//OS: rice (Oryza sativa) /GENE: STAR1/TFBS: ASR5 BS /BF: ASR5 Motifs on "-" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 99 AGCCCAT 93 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00797 Up.Conf.Int. 1 Found 1 167 TATAAATA 174 (Mism.= 0) TFBS AC: RSP02977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: O-box (oligo3) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00477 Up.Conf.Int. 1 Found 1 23 cTGCCGACCAcT 34 (Mism.= 2) Totally 25 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0368..AC:Y12859.1..OS:Lotus japonicus..GENE:gln1..PROD:glutamine synthetase..[ -200: +51] ..CDS: +213..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.34 C - 0.24 TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 225 CTTGTtGTCA 234 (Mism.= 1) TFBS AC: RSP00285//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box P /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00800 Up.Conf.Int. 1 Found 1 44 CTCCtAaAAACCC 56 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 5 226 AGAGAGAGA 218 (Mism.= 0) 224 AGAGAGAGA 216 (Mism.= 0) 222 AGAGAGAGA 214 (Mism.= 0) 220 AGAGAGAGA 212 (Mism.= 0) 218 AGAGAGAGA 210 (Mism.= 0) TFBS AC: RSP01068//OS: barley (Hordeum vulgare) /GENE: Synthetic OLIGOs/TFBS: HvH21 BS /BF: HvH21 Motifs on "-" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 37 TCTGACAGT 29 (Mism.= 0) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "-" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 16 CaGTTGGAG 8 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 3 227 aAGAGAGAGAGAGAGAg 211 (Mism.= 2) 225 GAGAGAGAGAGAGAGAA 209 (Mism.= 0) 223 GAGAGAGAGAGAGAaAt 207 (Mism.= 2) TFBS AC: RSP02005//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 2 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 238 CagATGACAACA 227 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 222 TCTCTTGTTGT 232 (Mism.= 2) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00538 Up.Conf.Int. 1 Found 1 222 TCTCTTGTTGT 232 (Mism.= 2) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 222 TCTCTTGTTGT 232 (Mism.= 2) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00538 Up.Conf.Int. 1 Found 1 222 TCTCTTGTTGT 232 (Mism.= 2) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 222 TCTCTTGTTGT 232 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 5 207 aTtTCTCTCTCTCTCT 222 (Mism.= 2) 209 tTCTCTCTCTCTCTCT 224 (Mism.= 1) 211 CTCTCTCTCTCTCTCT 226 (Mism.= 0) 213 CTCTCTCTCTCTCTtg 228 (Mism.= 2) 215 CTCTCTCTCTCTtgtT 230 (Mism.= 3) Totally 23 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0369..AC:Y12859.1..OS:Lotus japonicus..GENE:gln1..PROD:glutamine synthetase..[ -200: +51] ..CDS: +80..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.28 C - 0.21 TFBS AC: RSP00055//OS: horseradish (Armoracia lapathifolia) /GENE: prxC2/TFBS: Box 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 66 AGAATgATTAAA 55 (Mism.= 1) TFBS AC: RSP00079//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 115 CCCACCaACC 124 (Mism.= 1) TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00419 Up.Conf.Int. 1 Found 1 92 CTTGTtGTCA 101 (Mism.= 1) TFBS AC: RSP00420//OS: Eucalyptus gunnii /GENE: CCR/TFBS: ACI /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 115 CCCACCaACC 124 (Mism.= 1) TFBS AC: RSP00601//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich R /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00096 Up.Conf.Int. 1 Found 1 114 CCCCACCAA 122 (Mism.= 0) TFBS AC: RSP00645//OS: tobacco (Nicotiana tabacum) /GENE: prxC2/TFBS: box 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 66 AGAATgATTAAA 55 (Mism.= 1) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 243 TTCTCTCTCtT 233 (Mism.= 1) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 230 AGAAAGAGA 238 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00072 Up.Conf.Int. 1 Found 1 234 AGAGAGAGA 242 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 5 93 AGAGAGAGA 85 (Mism.= 0) 91 AGAGAGAGA 83 (Mism.= 0) 89 AGAGAGAGA 81 (Mism.= 0) 87 AGAGAGAGA 79 (Mism.= 0) 85 AGAGAGAGA 77 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 234 aGAGAGAGA 242 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 5 93 aGAGAGAGA 85 (Mism.= 1) 91 aGAGAGAGA 83 (Mism.= 1) 89 aGAGAGAGA 81 (Mism.= 1) 87 aGAGAGAGA 79 (Mism.= 1) 85 aGAGAGAGA 77 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00018 Up.Conf.Int. 1 Found 3 227 aAGAGAaAGAGAGAGAA 243 (Mism.= 2) 229 GAGAaAGAGAGAGAaAg 245 (Mism.= 3) 231 GAaAGAGAGAGAaAGAA 247 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 3 94 aAGAGAGAGAGAGAGAg 78 (Mism.= 2) 92 GAGAGAGAGAGAGAGAA 76 (Mism.= 0) 90 GAGAGAGAGAGAGAaAt 74 (Mism.= 2) TFBS AC: RSP02005//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI4/TFBS: W-box 2 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 105 CagATGACAACA 94 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 89 TCTCTTGTTGT 99 (Mism.= 2) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 1 89 TCTCTTGTTGT 99 (Mism.= 2) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 1 89 TCTCTTGTTGT 99 (Mism.= 2) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 1 89 TCTCTTGTTGT 99 (Mism.= 2) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 89 TCTCTTGTTGT 99 (Mism.= 1) TFBS AC: RSP02299//OS: Durum wheat (Triticum durum) /GENE: Ttd1a/TFBS: CAAT motif /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00114 Up.Conf.Int. 1 Found 1 194 TTtCCTCAATATAT 207 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 5 74 aTtTCTCTCTCTCTCT 89 (Mism.= 2) 76 tTCTCTCTCTCTCTCT 91 (Mism.= 1) 78 CTCTCTCTCTCTCTCT 93 (Mism.= 0) 80 CTCTCTCTCTCTCTtg 95 (Mism.= 2) 82 CTCTCTCTCTCTtgtT 97 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 4 247 tTCTtTCTCTCTCTtT 232 (Mism.= 3) 245 CTtTCTCTCTCTtTCT 230 (Mism.= 2) 243 tTCTCTCTCTtTCTCT 228 (Mism.= 2) 241 CTCTCTCTtTCTCTtc 226 (Mism.= 3) TFBS AC: RSP02619//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE2 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 194 AACGTGAA 187 (Mism.= 0) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 117 CACCAACC 124 (Mism.= 0) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 117 CACCAACC 124 (Mism.= 0) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 117 CACCAACC 124 (Mism.= 0) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 117 CACCAACC 124 (Mism.= 0) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 117 CACCAACC 124 (Mism.= 0) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "+" Strand: Mean Exp. Number 0.00767 Up.Conf.Int. 1 Found 1 118 ACCAACCA 125 (Mism.= 0) Totally 49 motifs of 26 different TFBSs have been found ____________________________________________________________ >PLPR0370..AC:AF354752.1 AF280748.1 Y15253.2..OS:Pisum sativum..GENE:plc..PROD:phospholipase C..[ -200: +51] ..CDS: +102..TSS:201 (+1) # Alternative TSS(s): +9 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.28 C - 0.28 TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00567 Up.Conf.Int. 1 Found 1 72 GCCGtGTGcC 81 (Mism.= 2) TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 79 CACACGgC 72 (Mism.= 1) TFBS AC: RSP00111//OS: pea (Pisum sativum) /GENE: PS-IAA4/5/TFBS: AuxRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00800 Up.Conf.Int. 1 Found 1 48 ATGTCaCAT 40 (Mism.= 1) TFBS AC: RSP00122//OS: pea, Pisum sativum /GENE: AS1/TFBS: Box C /BF: unknown nuclear protein Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 125 gTCCCAC 119 (Mism.= 1) TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 2 17 AAaAATAATAATAATAAcaA 36 (Mism.= 3) 20 AATAATAATAATAAcAAcTc 39 (Mism.= 3) TFBS AC: RSP00534//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: LRE-TATA O2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 21 ATAATaATaATAA 33 (Mism.= 2) TFBS AC: RSP00561//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 9/10 L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 22 AtTTTTTG 15 -- 6-- 8 CAtGAG 3 (Mism.= 1/ 1) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 122 CCACGTTG 115 (Mism.= 1) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00407 Up.Conf.Int. 1 Found 1 172 CCTTGTTTGG 163 (Mism.= 1) TFBS AC: RSP01136//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: TGTCACA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 47 TGTCACA 41 (Mism.= 0) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 172 CCTTGTTTGG 163 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 115 CaACGTGG 122 (Mism.= 1) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 115 CaACGTGG 122 (Mism.= 1) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 45 TCACATGaGT 36 (Mism.= 1) TFBS AC: RSP02017//OS: rice (Oryza sativa) /GENE: BRD1/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 74 CGTGTG 79 (Mism.= 0) TFBS AC: RSP02030//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ERSE-I /BF: [bZIP28 + NF-YB3] Motifs on "+" Strand: Mean Exp. Number 0.00810 Up.Conf.Int. 1 Found 1 215 CCAAT 219 --12-- 232 CACG 235 (Mism.= 0/ 0) TFBS AC: RSP02141//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE1 /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 137 gTTGTCGGTT 128 (Mism.= 1) TFBS AC: RSP02142//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE2 /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 93 AATGTCGGaT 84 (Mism.= 1) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 122 CCACGT 117 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 122 CCACGT 117 (Mism.= 0) TFBS AC: RSP02566//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLD/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 116 AaCGTGGGAc 125 (Mism.= 2) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 119 GTGGGACCca 128 (Mism.= 2) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 117 ACGTGG 122 (Mism.= 0) TFBS AC: RSP02888//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/GATA/MADS/3RMYB/NAC BS /BF: bHLH, GATA, MADS, 3RMYB, NAC Motifs on "+" Strand: Mean Exp. Number 0.00895 Up.Conf.Int. 1 Found 1 116 AACGTGGG 123 (Mism.= 0) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 119 GTGGGACC 126 (Mism.= 1) Totally 26 motifs of 25 different TFBSs have been found ____________________________________________________________ >PLPR0371..AC:AF121139.2..OS:Oryza sativa L. subsp. indica..GENE:RIM2..PROD:RIM2 protein..[ -200: +51] ..CDS: +149..TSS:201 (+1) # Alternative TSS(s): +2 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.27 T - 0.24 C - 0.20 TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00479 Up.Conf.Int. 1 Found 1 197 ACGCaTGTCCTg 208 (Mism.= 2) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00755 Up.Conf.Int. 1 Found 1 24 ATACCACTcTGg 35 (Mism.= 2) TFBS AC: RSP01091//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 219 ATAcAATCAAA 209 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00745 Up.Conf.Int. 1 Found 1 19 CTTTTTGTGG 10 (Mism.= 1) TFBS AC: RSP01437//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: GATA /BF: R-GATA Motifs on "-" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 225 tATAGGATA 217 (Mism.= 1) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00608 Up.Conf.Int. 1 Found 1 195 TCAcGCATGT 204 (Mism.= 1) TFBS AC: RSP01917//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Hsp18.1-CI/TFBS: TATA-HSE module M6 /BF: HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00056 Up.Conf.Int. 1 Found 1 103 cAAGAACATTCTtcC 117 (Mism.= 3) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 1 63 CCATTTTTTG 54 (Mism.= 1) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "+" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 195 tCACGCATGTc 205 (Mism.= 2) TFBS AC: RSP02998//OS: rice (Oryza sativa) /GENE: OsCBF1/TFBS: DRE /BF: ROC1 Motifs on "+" Strand: Mean Exp. Number 0.00837 Up.Conf.Int. 1 Found 1 205 CCTGTTT 211 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0372..AC:AB008892.1..OS:Nicotiana tabacum..GENE:chn134..PROD:chitinase 134..AC [-348:+50]..AC ..CDS: +18 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.32 C - 0.22 TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 112 AaAGAAATCAA 102 (Mism.= 1) TFBS AC: RSP00259//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd22/TFBS: ATMYB2 BS /BF: ATMYB2 (MYB) Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 230 TGGTTAG 236 (Mism.= 0) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "+" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 1 41 cACATGTCAT 50 (Mism.= 1) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00334 Up.Conf.Int. 1 Found 1 11 TGGTCAATTt 2 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 12 cTGGTCAATTt 2 (Mism.= 2) TFBS AC: RSP00473//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS3 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 46 CATGTGTaTGaTC 34 (Mism.= 2) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 10 CAGAATAA 17 (Mism.= 0) TFBS AC: RSP00579//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: LRE-TATA M2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 215 AgAATGATgAGGTTTTg 231 (Mism.= 3) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 220 GATGAGGTTT 229 (Mism.= 2) TFBS AC: RSP01103//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: AC1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 229 AAACCTCA 222 (Mism.= 0) TFBS AC: RSP01313//OS: soybean (Glycine max) /GENE: 11S A2B1a/TFBS: Regulatory Motif 3 /BF: unknown seed embryo nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 91 gGATgATTTCATAAt 77 (Mism.= 3) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 49 TgACATGTGT 40 (Mism.= 1) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 2 aAATTGACCAg 12 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 2 aAATTGACCAg 12 (Mism.= 2) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 24 TcACACGTtATT 13 (Mism.= 2) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "-" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 114 AAAAAGAAA 106 (Mism.= 0) TFBS AC: RSP02130//OS: rice (Oryza sativa) /GENE: OsAns/TFBS: At-MYB2 BS /BF: At-MYB2 Motifs on "-" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 236 CTAACCA 230 (Mism.= 0) TFBS AC: RSP02398//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: ABRE /BF: ThABF8 Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 16 AACGTGTG 23 (Mism.= 0) TFBS AC: RSP02572//OS: mangrove tree (Avicennia marina) /GENE: AmMYB1/TFBS: AmMYB1 BS /BF: AmMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 230 TGGTTAG 236 (Mism.= 0) TFBS AC: RSP02895//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 233 ACCAaAACC 225 (Mism.= 1) Totally 20 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0373..AC:AF314254.2..OS:Chlamydomonas reinhardtii..GENE:AOX1 (nuclear gene for mitochondrial product)..PROD:alternative oxidase 1..[ -200: +51] ..CDS: +62..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.25 C - 0.27 TFBS AC: RSP00112//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 247 TGACGTAA 240 (Mism.= 0) TFBS AC: RSP01086//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: bZIP BS /BF: bZIP Motifs on "-" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 175 TaTACGTTTC 166 (Mism.= 1) TFBS AC: RSP01831//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-2 (At4g10040)/TFBS: ACGT-motif /BF: AREB2/ABF4; GBF3; GBF-like protein; bHLH080 Motifs on "+" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 167 AAACGTAT 174 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 207 CTCTCTCgCaCTCaCT 222 (Mism.= 3) TFBS AC: RSP02542//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN2/TFBS: WUS BS 2 (KAN2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 180 AGTAATAT 173 (Mism.= 0) TFBS AC: RSP02734//OS: Chlamydomonas reinhardtii /GENE: GPXH/GPX5/TFBS: ERE /BF: SOR1 Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 45 CAACGTTG 52 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 52 CAACGTTG 45 (Mism.= 0) TFBS AC: RSP02735//OS: Chlamydomonas reinhardtii /GENE: GSTS1/TFBS: ERE /BF: SOR1 Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 45 CAACGTTG 52 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 52 CAACGTTG 45 (Mism.= 0) Totally 9 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0374..AC:AY684304.1 AF530460.1..OS:Striga hermonthica (Del. Benth.)..GENE:ShAS..PROD:asparagine synthetase..[ -200: +51] ..CDS: +247..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.26 C - 0.27 TFBS AC: RSP00405//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adjb /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00814 Up.Conf.Int. 1 Found 1 212 TTTGGAGT 205 (Mism.= 0) TFBS AC: RSP00577//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: AT-rich FF2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 34 AtTAAaTAaATAgTAATTAA 53 (Mism.= 4) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 136 AGAGAGAGA 128 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00148 Up.Conf.Int. 1 Found 1 126 GGAGAGAGA 118 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 7 143 GAGAGAcAGAGAGAGAg 127 (Mism.= 2) 141 GAGAcAGAGAGAGAGgg 125 (Mism.= 3) 139 GAcAGAGAGAGAGgGAg 123 (Mism.= 3) 137 cAGAGAGAGAGgGAGAg 121 (Mism.= 3) 135 GAGAGAGAGgGAGAGAg 119 (Mism.= 2) 133 GAGAGAGgGAGAGAGAg 117 (Mism.= 2) 131 GAGAGgGAGAGAGAGtt 115 (Mism.= 3) TFBS AC: RSP01443//OS: rice (Oryza sativa) /GENE: GAMyb/TFBS: GMS-1 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 122 AgAGaGTTGCTcTAC 108 (Mism.= 3) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 44 ATTTATtTAaTTA 32 (Mism.= 2) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 133 CTcTGTCTCT 142 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 9 115 aaCTCTCTCTCcCTCT 130 (Mism.= 3) 117 CTCTCTCTCcCTCTCT 132 (Mism.= 1) 119 CTCTCTCcCTCTCTCT 134 (Mism.= 1) 121 CTCTCcCTCTCTCTCT 136 (Mism.= 1) 123 CTCcCTCTCTCTCTgT 138 (Mism.= 2) 125 CcCTCTCTCTCTgTCT 140 (Mism.= 2) 127 CTCTCTCTCTgTCTCT 142 (Mism.= 1) 129 CTCTCTCTgTCTCTCa 144 (Mism.= 2) 131 CTCTCTgTCTCTCatT 146 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 126 GGAGAGAGAG 117 (Mism.= 0) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "+" Strand: Mean Exp. Number 0.00926 Up.Conf.Int. 1 Found 1 154 CGGAAAAAcC 163 (Mism.= 1) TFBS AC: RSP02949//OS: maize (Zea mays) /GENE: OPT/TFBS: GLK2 BS /BF: GLK2 Motifs on "-" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 12 GAGAATCT 5 (Mism.= 0) Totally 26 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0375..AC:X05167.1 Y00107 M11760 M15209..OS:Hordeum vulgare..GENE:thiol protease..PROD:aleurain..[ -200: +51] ..CDS: +58..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.20 C - 0.31 TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 1 174 TTATATA 168 (Mism.= 0) TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 102 TCAcAAATATcC 113 (Mism.= 2) TFBS AC: RSP00565//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: AT-rich G /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 23 GTATTTT 29 (Mism.= 0) TFBS AC: RSP01114//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 31 CCAAAAT 25 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 176 tTtTATATAT 167 (Mism.= 2) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 3 gCACATGTGT 12 (Mism.= 1) TFBS AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Quant. Seq.) /BF: AT-Hook Proteins Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 222 CAgTAAAATAcT 233 (Mism.= 2) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 141 aCCACTTGT 133 (Mism.= 1) TFBS AC: RSP01974//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 145 CTTGACCA 138 (Mism.= 0) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "-" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 14 gCACaCATGTG 4 (Mism.= 2) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0376..AC:AF239835.1..OS:Petroselinum crispum..GENE:ELI7.1..PROD:fatty acid desaturase/hydroxylase-like protein ELI7.1..[ -200: +51] ..CDS: +171..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.23 T - 0.24 C - 0.23 TFBS AC: RSP00036//OS: Brassica napus /GENE: napA/TFBS: ABRE Bp /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 198 CAAACACC 205 (Mism.= 0) TFBS AC: RSP00345//OS: arabidopsis (Arabidopsis thaliana; transgenic lines) /GENE: synthetic oligonucleotides/TFBS: Box S /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 53 CAGCCACCAAAGAGGACCtgGAAT 76 (Mism.= 2) TFBS AC: RSP00743//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 3 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00898 Up.Conf.Int. 1 Found 1 190 GAGTaGaAAATT 179 (Mism.= 2) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 126 cCCAAGTGTC 117 (Mism.= 1) TFBS AC: RSP02037//OS: Medicago truncatula /GENE: LBD1/TFBS: HB1 BS /BF: HB1 Motifs on "+" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 152 aAATAATTG 160 (Mism.= 1) TFBS AC: RSP02447//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS2 /BF: HB05; HB12 Motifs on "-" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 160 CAATTATTT 152 (Mism.= 0) TFBS AC: RSP02711//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 3 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 237 GCCTAgAGCCC 227 (Mism.= 1) TFBS AC: RSP02846//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 1 /BF: JRE-4 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 166 AAGCACGCCA 175 (Mism.= 1) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 188 CTCATTTGtT 197 (Mism.= 1) TFBS AC: RSP02962//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box D /BF: BZR1 Motifs on "-" Strand: Mean Exp. Number 0.00347 Up.Conf.Int. 1 Found 1 197 AACAAaTGAG 188 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0377..AC:AF239835.1..OS:Petroselinum crispum..GENE:ELI7.2..PROD:fatty acid desaturase/hydroxylase-like protein ELI7.2..[ -200: +51] ..CDS: +166..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.27 C - 0.22 TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 150 AATAATAtTAtTAAgAAATg 131 (Mism.= 4) TFBS AC: RSP00345//OS: arabidopsis (Arabidopsis thaliana; transgenic lines) /GENE: synthetic oligonucleotides/TFBS: Box S /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 12 CAGCCACCAAAGAGGACCCAGAAT 35 (Mism.= 0) TFBS AC: RSP00932//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-1 /BF: nuclear proteins from cotyledons; Motifs on "-" Strand: Mean Exp. Number 0.00627 Up.Conf.Int. 1 Found 1 151 tAATAATATTaTTAAg 136 (Mism.= 3) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 32 CTGGGtCCTCt 22 (Mism.= 2) TFBS AC: RSP01880//OS: tomato (Lycopersicon esculentum) /GENE: LeACO1/TFBS: LeHB-1 BS 2 /BF: LeHB-1 Motifs on "+" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 139 AATAATATT 147 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 150 AATAATATT 142 (Mism.= 0) TFBS AC: RSP02846//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 1 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00927 Up.Conf.Int. 1 Found 1 208 CAGCACGCCA 199 (Mism.= 0) TFBS AC: RSP02850//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VITL1/TFBS: VP2 /BF: WRKY46 Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 72 TTTGGTCAgACg 83 (Mism.= 2) Totally 8 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0378..AC:D38050.1..OS:Populus kitakamiensis..GENE:prxA3a..PROD:peroxidase..[ -200: +51] ..CDS: +28..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.18 T - 0.35 C - 0.19 TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 3 TTAtTtCAATGG 14 (Mism.= 2) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 188 CcAGTGaTGCTG 177 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 62 ACACGTG 68 (Mism.= 0) TFBS AC: RSP00544//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 15/GT-1 N1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 147 ATGAttTTATTGC 159 (Mism.= 2) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 61 TACACGTGCT 70 (Mism.= 0) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 61 TACACGTGCt 70 (Mism.= 1) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00954 Up.Conf.Int. 1 Found 1 70 AgCACGTGTa 61 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 61 TACACGTGCt 70 (Mism.= 1) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00364 Up.Conf.Int. 1 Found 1 87 GTTGATTTGA 78 (Mism.= 1) TFBS AC: RSP01072//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1d /BF: PvAlf Motifs on "-" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 54 ATTACGTGgT 45 (Mism.= 1) TFBS AC: RSP01154//OS: maize (Zea mays) /GENE: Em/TFBS: Em1d /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 54 ATTACGTGgT 45 (Mism.= 1) TFBS AC: RSP01134//OS: Fusarium solani f. sp, pisi (Nectria haematococca) /GENE: Cutinase/TFBS: CTF2 BS /BF: CTF2 Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 38 GTTCaAGACC 47 (Mism.= 1) TFBS AC: RSP01221//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: GARE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 25 TAACCACC 18 (Mism.= 0) TFBS AC: RSP01227//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00046 Up.Conf.Int. 1 Found 1 244 CTTTAtCTACCAtC 231 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00719 Up.Conf.Int. 1 Found 1 70 AgCACGTGTa 61 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 70 AgCACGTGTA 61 (Mism.= 1) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 49 GTGGTCTTGA 40 (Mism.= 1) TFBS AC: RSP02296//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 44 gaCCACGTAATA 55 (Mism.= 2) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00954 Up.Conf.Int. 1 Found 1 69 GCACGTGt 62 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 61 TACACGTGcT 70 (Mism.= 1) TFBS AC: RSP02540//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN2/TFBS: WUS BS 1 (KAN2) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00783 Up.Conf.Int. 1 Found 1 192 ATTAATCG 199 (Mism.= 0) TFBS AC: RSP02830//OS: poplar (Poplus trichocarpa) /GENE: PtANR1/TFBS: MdMYB9 BS (PtANR1) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 61 TaCACGTGCT 70 (Mism.= 1) TFBS AC: RSP02914//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS1 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 241 TAtCTACCAT 232 (Mism.= 1) TFBS AC: RSP02916//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS3 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00039 Up.Conf.Int. 1 Found 1 241 TATCTACCAT 232 (Mism.= 0) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 130 GTGGGCAC 137 (Mism.= 1) Totally 25 motifs of 25 different TFBSs have been found ____________________________________________________________ >PLPR0379..AC:D38051.1..OS:Populus kitakamiensis..GENE:prxA4a..PROD:peroxidase..[ -200: +51] ..CDS: +32..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.32 C - 0.19 TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00580 Up.Conf.Int. 1 Found 1 53 CATGgA 48 -- 6-- 41 CACGTa 36 (Mism.= 1/ 1) TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00938 Up.Conf.Int. 1 Found 1 124 GCaGCGTGtC 133 (Mism.= 2) TFBS AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 76/65 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 235 GAAGctTTCAAA 246 (Mism.= 2) TFBS AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: Z element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 31 cCACATACGT 40 (Mism.= 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00638 Up.Conf.Int. 1 Found 1 45 GTATCCATG 53 (Mism.= 0) TFBS AC: RSP00979//OS: soybean (Glycine max) /GENE: vspA/TFBS: Box I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 114 CCATACAAaT 105 (Mism.= 1) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 35 ATACGTGT 42 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 36 TACGTGTACGTa 47 (Mism.= 1) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 61 GAcTgTGACTGT 72 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0380..AC:Z28347.1..OS:Hordeum vulgare (NK 1558)..GENE:plastocyanin..PROD:plastocyanin..[ -200: +51] ..CDS: +122..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.23 G - 0.23 T - 0.27 C - 0.27 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 8 TGTGGagATATA 19 (Mism.= 2) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 2 CATGCATG 9 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 9 CATGCATG 2 (Mism.= 0) TFBS AC: RSP00157//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 15 ATaTATATAtAT 26 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 26 ATaTATATAtAT 15 (Mism.= 2) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 44 GCtACCTCAcCT 55 (Mism.= 2) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 165 TATAAATcCaAG 176 (Mism.= 2) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00488 Up.Conf.Int. 1 Found 1 59 GATGAGGTGA 50 (Mism.= 1) TFBS AC: RSP01063//OS: arabidopsis (Arabidopsis thaliana) /GENE: Nia2/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 209 AgGATAGATAAa 198 (Mism.= 2) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00786 Up.Conf.Int. 1 Found 1 209 AGGATaGATaA 199 (Mism.= 2) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 1 ACATGCATGT 10 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 10 aCATGCATGt 1 (Mism.= 2) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 2 CATGCATG 9 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 9 CATGCATG 2 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00935 Up.Conf.Int. 1 Found 2 15 aTaTATATAT 24 (Mism.= 2) 17 aTaTATATAT 26 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00695 Up.Conf.Int. 1 Found 3 28 CcaTATATAT 19 (Mism.= 2) 26 aTaTATATAT 17 (Mism.= 2) 24 aTaTATATAT 15 (Mism.= 2) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 2 CATGCATG 9 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 9 CATGCATG 2 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00806 Up.Conf.Int. 1 Found 1 1 aCATGCATGT 10 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 10 aCATGCATGT 1 (Mism.= 1) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 238 GCCAAGTGTt 229 (Mism.= 1) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 70 CTCTCCAT 63 (Mism.= 0) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "+" Strand: Mean Exp. Number 0.00851 Up.Conf.Int. 1 Found 1 1 ACAtGCATGTG 11 (Mism.= 1) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 2 CATGCATG 9 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 9 CATGCATG 2 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 2 CATGCATG 9 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 9 CATGCATG 2 (Mism.= 0) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "+" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 5 GCAtGTGGAG 14 (Mism.= 1) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "+" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 5 GCAtGTGGAG 14 (Mism.= 1) Totally 32 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0381..AC:X67099.1..OS:Hordeum vulgare (NK 1558)..GENE:1,3-glucan endohydrolase isoenzyme GIII..PROD:glucan endo-1,3-beta-glucosidase..[ -200: +51] ..CDS: +40..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.25 T - 0.22 C - 0.22 TFBS AC: RSP00462//OS: tomato (Lycopersicon esculentum) /GENE: RBCS1; RBCS2; RBCS3A;/TFBS: I-box /BF: IBF Motifs on "-" Strand: Mean Exp. Number 0.00109 Up.Conf.Int. 1 Found 1 61 GcATGAGATgAGA 49 (Mism.= 2) TFBS AC: RSP00561//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 9/10 L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 2 157 AATTTTTt 164 -- 7-- 172 tAAGAG 177 (Mism.= 1/ 1) 158 AtTTTTTG 165 -- 6-- 172 tAAGAG 177 (Mism.= 1/ 1) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 68 TACACGTtCT 77 (Mism.= 1) TFBS AC: RSP00937//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: I box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00109 Up.Conf.Int. 1 Found 1 49 TCTcATCTCATgC 61 (Mism.= 2) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 212 CCTTGTTTGG 203 (Mism.= 1) Totally 6 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0382..AC:AJ012098.1 AF289201.1 AY055755..OS:Chlamydomonas reinhardtii..GENE:Fe-hydrogenase..PROD:Fe-hydrogenase..[ -200: +51] ..CDS: +159..TSS:201 (+1) |Other Plants | CCAAT motif on reverse str Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.30 T - 0.18 C - 0.28 TFBS AC: RSP00054//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: C2a-BS /BF: root-sprcific nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00797 Up.Conf.Int. 1 Found 1 197 GCTTATC 203 (Mism.= 0) TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 205 AAGATAAGc 197 (Mism.= 1) TFBS AC: RSP01862//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE3 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00640 Up.Conf.Int. 1 Found 1 120 GCCgAGTGTC 129 (Mism.= 1) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 120 GCCgAGTGTC 129 (Mism.= 1) TFBS AC: RSP01890//OS: Boea hygrometrica /GENE: BhGolS1/TFBS: W-box 1 /BF: BhWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 199 AgCTGACCAG 190 (Mism.= 1) TFBS AC: RSP01974//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 79 CTTGACCA 72 (Mism.= 0) TFBS AC: RSP02338//OS: potato (Solanum tuberosum) /GENE: StGA2ox1/TFBS: /BF: StBEL5 Motifs on "-" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 78 TTGACCAGTCA 68 (Mism.= 1) TFBS AC: RSP02341//OS: potato (Solanum tuberosum) /GENE: IPT/TFBS: /BF: StBEL5 Motifs on "-" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 78 TTGACCAGTCA 68 (Mism.= 1) TFBS AC: RSP02575//OS: Tamarix androssowii /GENE: TaeIF5A1/TFBS: W-box /BF: TaWRKY; TaRAV Motifs on "+" Strand: Mean Exp. Number 0.00843 Up.Conf.Int. 1 Found 1 64 gGGCTGACT 72 (Mism.= 1) TFBS AC: RSP02692//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: CACT box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 131 CgGACACTCGGc 120 (Mism.= 2) TFBS AC: RSP02950//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/1 /BF: E2F1 Motifs on "-" Strand: Mean Exp. Number 0.00559 Up.Conf.Int. 1 Found 1 11 AGCGCtCGAA 2 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0383..AC:X96999.1..OS:Phaseolus vulgaris..GENE:Ypr10..PROD:intracellular pathogenesis related protein..[ -200: +51] ..CDS: +69..TSS:201 (+1) # Alternative TSS(s): +8 +10 |Taxon: Dicot |Promoter Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 162 TGTGGTTATAaA 173 (Mism.= 1) TFBS AC: RSP00332//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: S1 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00747 Up.Conf.Int. 1 Found 1 122 ATGGTATT 129 (Mism.= 0) TFBS AC: RSP00546//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: 15 Z /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00503 Up.Conf.Int. 1 Found 1 219 gAGAaGAtGTTTGCT 205 (Mism.= 3) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 128 ATACCAtaGTGT 117 (Mism.= 2) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 133 AGAAACAA 140 (Mism.= 0) TFBS AC: RSP01094//OS: pea (Pisum sativum) /GENE: GS2/TFBS: GT-1 box /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 1 36 TAtTTGGATAAA 47 (Mism.= 1) TFBS AC: RSP01917//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Hsp18.1-CI/TFBS: TATA-HSE module M6 /BF: HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 60 cAAGAACATTCTCTt 46 (Mism.= 2) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0384..AC:X15711.1..OS:Zea mays..GENE:ANT-G1..PROD:adenine nucleotide translocator..[ -200: +51] ..CDS: +221..TSS:201 (+1) # Alternative TSS(s): +2 +24 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.18 T - 0.42 C - 0.16 TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 170 TCCACGTCTa 161 (Mism.= 1) TFBS AC: RSP00058//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: CE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 246 TGCCACCtG 238 (Mism.= 1) TFBS AC: RSP00611//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS O /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 131 TaTaTAATAtGCATCTT 147 (Mism.= 3) TFBS AC: RSP00773//OS: Brassica oleracea /GENE: SLR1/TFBS: Box III /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 25 TGACTTAATG 34 (Mism.= 1) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 25 TGACTTAATG 34 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00364 Up.Conf.Int. 1 Found 1 246 TGCCACcTGaAA 235 (Mism.= 2) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00942 Up.Conf.Int. 1 Found 1 169 CCACGTCT 162 (Mism.= 1) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 111 AAcATaTTTTCTG 99 (Mism.= 2) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 170 TCCACGT 164 (Mism.= 0) TFBS AC: RSP01739//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY11) BS1 /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 21 TcATTGACTTAAT 33 (Mism.= 1) TFBS AC: RSP01977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(D) /BF: EIN3/EIL1 Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 139 ATGCATCT 146 (Mism.= 0) TFBS AC: RSP01995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CE1 /BF: RAP2.6 Motifs on "-" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 246 TGCCACCtG 238 (Mism.= 1) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 223 GCAGCC 228 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0385..AC:X15712.1..OS:Zea mays..GENE:ANT-G2..PROD:adenine nucleotide translocator..[ -200: +51] ..CDS: +221..TSS:201 (+1) # Alternative TSS(s): +2 +19 +24 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.22 T - 0.45 C - 0.14 TFBS AC: RSP00160//OS: pea, Pisum sativum /GENE: pra2/TFBS: DE1 /BF: DF1 Motifs on "-" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 137 atATTTTACAGT 126 (Mism.= 2) TFBS AC: RSP00255//OS: arabidopsis (Arabidopsis thaliana) /GENE: ProDH/TFBS: ACTCAT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 138 ACTCATCCT 146 (Mism.= 0) TFBS AC: RSP00850//OS: maize (Zea mays) /GENE: H4C7/TFBS: CAT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 226 GCCAAC 231 (Mism.= 0) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 209 GTTGACATTA 218 (Mism.= 1) TFBS AC: RSP01331//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CArG3 (AGL15) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 111 TTACTcTATATtGaAA 126 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 126 TTtCaATATAgAGTAA 111 (Mism.= 3) TFBS AC: RSP01332//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DTA4/TFBS: CArG3 (DTA4) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 111 TTACTcTATATtGaAA 126 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 126 TTtCaATATAgAGTAA 111 (Mism.= 3) TFBS AC: RSP01787//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNAT2/TFBS: AS1-AS2 BS I (KNAT2 A) /BF: AS1-AS2 Motifs on "-" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 233 CTGTTG 228 (Mism.= 0) TFBS AC: RSP01878//OS: tomato (Lycopersicon esculentum) /GENE: LeACS2/TFBS: LeCp BS /BF: LeCp Motifs on "+" Strand: Mean Exp. Number 0.00680 Up.Conf.Int. 1 Found 1 130 TAAAATAT 137 (Mism.= 0) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 223 GCAGCC 228 (Mism.= 0) TFBS AC: RSP02689//OS: green algae Dunaliella bardawil (Dunaliella salina) /GENE: Dbzds/TFBS: HRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 138 ACTCATCCT 146 (Mism.= 0) Totally 12 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0386..AC:X52572.1..OS:Hordeum vulgare subsp. vulgare..GENE:(1-3,1-4)-beta-D-glucanase (EC 3.2.1.73)..PROD:(1-3,1-4)-beta-D-glucanase..[ -200: +51] ..CDS: +91..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.25 T - 0.18 C - 0.29 TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 175 TTATATA 169 (Mism.= 0) TFBS AC: RSP00394//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "-" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 229 TGTAAAG 223 (Mism.= 0) TFBS AC: RSP00396//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: P-box (s) /BF: PBF-1 Motifs on "-" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 229 TGTAAAG 223 (Mism.= 0) TFBS AC: RSP00429//OS: barley (Hordeum vulgare) /GENE: Hor2 gene/TFBS: P-box; hor2-box. /BF: BLZ1 (bZIP transcription factor); PBF; Motifs on "-" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 229 TGTAAAG 223 (Mism.= 0) TFBS AC: RSP00842//OS: maize (Zea mays) /GENE: H3C4/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00364 Up.Conf.Int. 1 Found 1 160 CTCGGATC 167 (Mism.= 0) TFBS AC: RSP00970//OS: soybean (Glycine max) /GENE: Auxin-regulated genes/TFBS: CRE (G/A) /BF: STF1; STF2; STGA1; Motifs on "+" Strand: Mean Exp. Number 0.00814 Up.Conf.Int. 1 Found 1 54 GTGACGCAt 62 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 209 AGAAACAA 216 (Mism.= 0) TFBS AC: RSP01402//OS: wheat (Triticum aestivum) /GENE: alpha-gliadin/TFBS: PB /BF: WPBF Motifs on "-" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 229 TGTAAAG 223 (Mism.= 0) TFBS AC: RSP01517//OS: wheat (Triticum aestivum) /GENE: H2B (TH 123)/TFBS: Type III element /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 167 GATCCGAG 160 --15-- 144 CCAAT 140 (Mism.= 1/ 0) TFBS AC: RSP01518//OS: wheat (Triticum aestivum) /GENE: H2B (TH 153)/TFBS: Type III element /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 167 GATCCGAG 160 --15-- 144 CCAAT 140 (Mism.= 1/ 0) TFBS AC: RSP01519//OS: maize (Zea mays) /GENE: H2B (H2B4)/TFBS: Type III element /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 167 GATCCGAG 160 --15-- 144 CCAAT 140 (Mism.= 1/ 0) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 230 CTGTAAAGCTC 220 (Mism.= 2) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 151 CTATGTCTCc 160 (Mism.= 1) TFBS AC: RSP01710//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Intermediate” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 177 CCTTATATAG 168 (Mism.= 0) TFBS AC: RSP02033//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BNQ3/TFBS: CArG box (BNQ3) /BF: [AP3+PI] heterodimer Motifs on "+" Strand: Mean Exp. Number 0.00017 Up.Conf.Int. 1 Found 1 167 CCTATATAAG 176 (Mism.= 0) TFBS AC: RSP02707//OS: rice blast fungus (Magnaporthe oryzae) /GENE: COS1-dependent genes/TFBS: A4GA3-motif /BF: COS1 Motifs on "+" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 206 AAAAGAAA 213 (Mism.= 0) TFBS AC: RSP02891//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G2-like/Zn-finger TFs BS /BF: G2-like TFs; Zn finger TFs Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 240 GCATCACCC 248 (Mism.= 0) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0387..AC:AF203033.1..OS:Chlamydomonas reinhardtii..GENE:NIT1 (Nia1)..PROD:nitrate reductase..[ -200: +51] ..CDS: +312..TSS:201 (+1) # Alternative TSS(s): +15 +19 +17 |Other Plants | CCAAT motif Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.19 G - 0.33 T - 0.21 C - 0.27 TFBS AC: RSP00090//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 120/100 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 81 ATTCGCTTCCATAGGACGC 99 (Mism.= 0) TFBS AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 76/65 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 125 GAAGGGTTCAAA 136 (Mism.= 0) TFBS AC: RSP00506//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 33/8 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 168 CGCTCCCGGCCCCGGGCTCTTGTG 191 (Mism.= 0) TFBS AC: RSP00507//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 51/33 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 150 CGAACTTTTGTCGGGGGGC 168 (Mism.= 0) TFBS AC: RSP00661//OS: soybean (Glycine max) /GENE: vspB/TFBS: JA-RD motif /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 126 tCCCTtGAACCTTCA 112 (Mism.= 2) TFBS AC: RSP01020//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: Gap box 2 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 71 ATGAAAA 77 (Mism.= 0) TFBS AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/TFBS: PLE-79 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 216 AGCAAGA 222 (Mism.= 0) TFBS AC: RSP02141//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE1 /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 241 TTgGTCGGTT 232 (Mism.= 1) TFBS AC: RSP02975//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: O-box (oligo1) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 231 gaACCGACCAAT 242 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0388..AC:AY654626.1..OS:Linum usitatissimum..GENE:PLR..PROD:pinoresinol lariciresinol reductase..[ -200: +51] ..CDS: +51..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.17 T - 0.31 C - 0.22 TFBS AC: RSP00212//OS: arabidopsis (Arabidopsis thaliana) /GENE: ATHB-2/TFBS: ATHB-2 BE /BF: ATHB-2 protein Motifs on "+" Strand: Mean Exp. Number 0.00850 Up.Conf.Int. 1 Found 1 111 TAATAATTA 119 (Mism.= 0) TFBS AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS5 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00554 Up.Conf.Int. 1 Found 1 230 AACCAATCCt 239 (Mism.= 1) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 20 AaCAACAACC 11 (Mism.= 1) TFBS AC: RSP01045//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box E /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 123 GGgCCCATCAAG 134 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00929 Up.Conf.Int. 1 Found 1 165 CTCTATATAT 174 (Mism.= 0) TFBS AC: RSP01297//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Inr element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 184 tGCCATCAG 192 (Mism.= 1) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00160 Up.Conf.Int. 1 Found 1 39 CCAAAATGT 47 (Mism.= 0) TFBS AC: RSP02117//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: AP-1 BS /BF: AP-1 Motifs on "-" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 76 TGAGTTAG 69 (Mism.= 0) TFBS AC: RSP02895//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 19 ACaACAACC 11 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0389..AC:X74217.1..OS:Zea mays..GENE:p60.1 (beta-D-glucosidase; ZmGLU1)..PROD:beta-glucosidae..[ -200: +51] ..CDS: +58..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.29 C - 0.21 TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00263 Up.Conf.Int. 1 Found 1 119 TCCAtGTCTC 110 (Mism.= 1) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 178 gATGCA 183 -- 7-- 191 CACtTG 196 (Mism.= 1/ 1) TFBS AC: RSP00072//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: ACGT box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00688 Up.Conf.Int. 1 Found 1 98 GTACGTG 104 (Mism.= 0) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 196 CAAGTGGaGCTG 185 (Mism.= 1) TFBS AC: RSP00503//OS: tobacco (Nicotiana tabacum) /GENE: Ntltp1/TFBS: D1 box /BF: Different bZIP factors, including RITA-1 Motifs on "+" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 2 152 CTAGCTAG 159 (Mism.= 0) 233 CTAGCTAG 240 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 2 240 CTAGCTAG 233 (Mism.= 0) 159 CTAGCTAG 152 (Mism.= 0) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 198 aCCAAGTGGA 189 (Mism.= 1) TFBS AC: RSP00802//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: Box A-1 /BF: BABF Motifs on "+" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 47 ATtTATATATgagATATAAT 66 (Mism.= 4) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00713 Up.Conf.Int. 1 Found 1 196 CAaGTG 191 -- 5-- 185 gATGCA 180 (Mism.= 1/ 1) TFBS AC: RSP01093//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 240 gCTAAGCAAAG 250 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 1 TCACATcTGT 10 (Mism.= 1) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00513 Up.Conf.Int. 1 Found 1 118 CcATGTCTCT 109 (Mism.= 1) TFBS AC: RSP01977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(D) /BF: EIN3/EIL1 Motifs on "-" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 184 ATGCATCT 177 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 178 CTATTTATAG 169 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 169 CTATAAATAG 178 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 178 CTATTTATAG 169 (Mism.= 0) Totally 19 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0390..AC:AY530155.1..OS:Dunaliella tertiolecta..GENE:rbcS1..PROD:ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit..[ -200: +51] ..CDS: +56..TSS:201 (+1) |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.13 T - 0.23 C - 0.38 TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 164 GTTGGTTAcTAAT 176 (Mism.= 1) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00503 Up.Conf.Int. 1 Found 1 170 aACCaACTTC 161 (Mism.= 2) TFBS AC: RSP01932//OS: soybean (Glycine max) /GENE: N23/TFBS: InvA/InvB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 165 ACtTCCCcTTGT 154 (Mism.= 2) TFBS AC: RSP02104//OS: maize (Zea mays) /GENE: A1/TFBS: B/C1 -101 element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 52 TGAgTGGAGGATGC 39 (Mism.= 1) TFBS AC: RSP02328//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 2 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 169 ACCAACT 163 (Mism.= 0) TFBS AC: RSP02492//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (5) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 169 ACCAAC 164 (Mism.= 0) TFBS AC: RSP02548//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YAB3/TFBS: WUS BS (AS2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 215 ATTAATTG 208 (Mism.= 0) TFBS AC: RSP02590//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 169 ACCAACT 163 (Mism.= 0) TFBS AC: RSP02762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS2 (MYB58) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00706 Up.Conf.Int. 1 Found 1 170 aACCAACT 163 (Mism.= 1) TFBS AC: RSP02763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS1 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00706 Up.Conf.Int. 1 Found 1 170 aACCAACT 163 (Mism.= 1) TFBS AC: RSP02917//OS: pear (Pyrus bretschneideri) /GENE: PbANR/TFBS: PbMYB9 BS /BF: PbMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 164 GTTGGTT 170 (Mism.= 1) TFBS AC: RSP02953//OS: maize (Zea mays) /GENE: SHR2/TFBS: E2F1 BS /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00815 Up.Conf.Int. 1 Found 1 91 ACCCGCTGCA 100 (Mism.= 2) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0391..AC:AY530156.1..OS:Dunaliella tertiolecta..GENE:rbcS2..PROD:ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit..[ -200: +51] ..CDS: +60..TSS:201 (+1) |Other Plants | CCAAT motif Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.18 T - 0.27 C - 0.29 TFBS AC: RSP00632//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CIV /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 133 TCGGGTgAcAATG 121 (Mism.= 2) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "+" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 104 TCCTAAAGGaG 114 (Mism.= 1) TFBS AC: RSP02872//OS: Artemisia annua /GENE: DBR2/TFBS: WRKY BS1 /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00551 Up.Conf.Int. 1 Found 1 130 GGTGACAA 123 (Mism.= 0) Totally 3 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0392..AC:AY315191.1..OS:Brassica juncea..GENE:GSTF2..PROD:phi class glutathione S-transferase..[ -200: +51] ..CDS: +72..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.34 C - 0.19 TFBS AC: RSP00838//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: CCGTCG motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 88 CCGTCG 83 (Mism.= 0) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 185 aCTTGTCTCT 194 (Mism.= 1) TFBS AC: RSP01977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(D) /BF: EIN3/EIL1 Motifs on "-" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 102 ATGCATCT 95 (Mism.= 0) TFBS AC: RSP02106//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 187 TTGTCTCTT 195 (Mism.= 0) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 190 TcTCTTGTTTc 200 (Mism.= 2) TFBS AC: RSP02204//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: MYCS (SmPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 190 TcTCTTGTTtC 200 (Mism.= 2) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0393..AC:AF064562.1..OS:Hordeum vulgare subsp. vulgare..GENE:sbeIIa..PROD:starch branching enzyme IIa..[ -200: +51] ..CDS: +453..TSS:201 (+1) # Alternative TSS(s): +3 +5 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.17 G - 0.22 T - 0.37 C - 0.25 TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 43 aTCTCTCTCaT 33 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 2 34 tGAGAGAGA 42 (Mism.= 1) 36 AGAGAGAtA 44 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 34 tGAGAGAGA 42 (Mism.= 1) TFBS AC: RSP00948//OS: rice (Oryza sativa), Oryza sativa /GENE: PHYA/TFBS: GT3-bx /BF: GT-2 Motifs on "+" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 94 GGTAAAT 100 (Mism.= 0) TFBS AC: RSP01057//OS: arabidopsis (Arabidopsis thaliana) /GENE: rbcS-1a/TFBS: GT-3a Box III /BF: GT-3a Motifs on "+" Strand: Mean Exp. Number 0.00633 Up.Conf.Int. 1 Found 1 123 GgCGTTACCAc 133 (Mism.= 2) TFBS AC: RSP02173//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp7/II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 91 GCGGGtAaATGC 102 (Mism.= 2) TFBS AC: RSP02512//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR2/TFBS: AtSGR2-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00265 Up.Conf.Int. 1 Found 1 32 TCATGCAG 25 (Mism.= 0) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 41 CTCTCTCAt 33 (Mism.= 1) Totally 9 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0394..AC:AF064563.1..OS:Hordeum vulgare subsp. vulgare..GENE:sbeIIb..PROD:starch branching enzyme IIb..[ -200: +51] ..CDS: +124..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.15 G - 0.21 T - 0.18 C - 0.45 TFBS AC: RSP00089//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 231/219 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 196 TGGTAGGGgGCG 185 (Mism.= 1) TFBS AC: RSP00217//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: motif III-motif III /BF: unknown bZIP proteins Motifs on "-" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 111 GCgGCGTGGt 102 --17-- 84 GtgGCGTGGC 75 (Mism.= 2/ 2) TFBS AC: RSP01529//OS: pea (Pisum sativum) /GENE: PsCHS3/TFBS: Box I /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 35 GCTACCaTCCA 45 (Mism.= 1) TFBS AC: RSP01530//OS: pea (Pisum sativum) /GENE: PsCHS4/TFBS: Box I /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 35 GCTACCaTCCA 45 (Mism.= 1) TFBS AC: RSP01531//OS: pea (Pisum sativum) /GENE: PsCHS5/TFBS: Box I /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 35 GCTACCaTCCA 45 (Mism.= 1) TFBS AC: RSP02085//OS: pine (Pinus taeda) /GENE: Pta4CLalpha/TFBS: AC element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 75 CCAACGCGCGCG 64 (Mism.= 2) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 245 tTAAACCcAC 236 (Mism.= 2) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 10 AAACCCcAA 18 (Mism.= 1) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0395..AC:AY137518.1..OS:Hordeum vulgare subsp. vulgare..GENE:hir1..PROD:hypersensitive-induced reaction protein 1..[ -200: +51] ..CDS:+1671..TSS:201 (+1) # Alternative TSS(s): +9 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.24 T - 0.25 C - 0.22 TFBS AC: RSP00017//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF3-BE /BF: SEF3, soybean Embryo Factor 3 Motifs on "-" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 77 AcCCCA 72 --26-- 45 AACCCA 40 (Mism.= 1/ 0) TFBS AC: RSP00230//OS: parsley, Petroselinum crispum /GENE: CHS-1/TFBS: MRECHS /BF: PcMYB1; (Myb1 from P. crispum) Motifs on "-" Strand: Mean Exp. Number 0.00783 Up.Conf.Int. 1 Found 1 45 AACCcAACCT 36 (Mism.= 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 89 GATACCATG 81 (Mism.= 0) TFBS AC: RSP00382//OS: spinach (Spinacia oleracea) /GENE: rps1/TFBS: S1F BS2 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 42 GGTtTATGTtAAAACc 57 (Mism.= 3) TFBS AC: RSP00397//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00284 Up.Conf.Int. 1 Found 1 176 AGTGGCGG 183 (Mism.= 0) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 191 CCCCTCCTC 183 (Mism.= 0) TFBS AC: RSP00669//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: PG/TFBS: B-box /BF: fruit nuclear protein extracts Motifs on "+" Strand: Mean Exp. Number 0.00248 Up.Conf.Int. 1 Found 1 12 TGATcATtTAAAAA 25 (Mism.= 2) TFBS AC: RSP00942//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 71 GTGgGGTcAAcATGG 85 (Mism.= 3) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 7 AAAtTTgATCATTT 20 (Mism.= 2) TFBS AC: RSP01073//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em2b /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00114 Up.Conf.Int. 1 Found 1 225 CAAGCAGAG 233 (Mism.= 0) TFBS AC: RSP01345//OS: cucumber, Cucumis sativus /GENE: ms/TFBS: IMH2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 46 AAACCCAaCCT 36 (Mism.= 1) TFBS AC: RSP01347//OS: cucumber, Cucumis sativus /GENE: ICL/TFBS: IMH2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 46 AAaCCCAACCT 36 (Mism.= 1) TFBS AC: RSP01595//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box II /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 71 GTGgGGTcAAcATGG 85 (Mism.= 3) TFBS AC: RSP01682//OS: pea (Pisum sativum) /GENE: FBPase/TFBS: PF1 BS /BF: PF1 Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 14 ATCATTTAAAAaaTaT 29 (Mism.= 3) TFBS AC: RSP01817//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: GAAATA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 136 GGAAATAA 129 (Mism.= 0) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 91 AAACCCTA 98 (Mism.= 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 98 TAGGGTTT 91 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 197 GAAGAAGAA 205 (Mism.= 0) Totally 18 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0396..AC:AY137517.1..OS:Hordeum vulgare subsp. vulgare..GENE:hir3..PROD:hypersensitive-induced reaction protein 3..[ -200: +51] ..CDS:+2159..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.16 G - 0.24 T - 0.21 C - 0.39 TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 160 TTTAGGG 166 (Mism.= 0) TFBS AC: RSP00744//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 4 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 179 AGCAGGgAAcAC 190 (Mism.= 2) TFBS AC: RSP01175//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 2 /BF: Zmhox1a Motifs on "+" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 6 AGCTGCCCGTt 16 (Mism.= 1) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 62 TTTCAgTT 55 (Mism.= 1) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 166 CCCTAAA 160 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0397..AC:AY137517.1..OS:Hordeum vulgare subsp. vulgare GENE:hir3..PROD:hypersensitive-induced reaction protein 3..[ -200: +51] ..CDS: +244..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.23 T - 0.33 C - 0.23 TFBS AC: RSP00195//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00192 Up.Conf.Int. 1 Found 1 202 TCCtTGTACCA 212 (Mism.= 1) TFBS AC: RSP00243//OS: maize (Zea mays) /GENE: PEPC/TFBS: MNF1 BS core /BF: MNF1; MNB1a; MNB1b; Motifs on "+" Strand: Mean Exp. Number 0.00533 Up.Conf.Int. 1 Found 1 126 GTGCCCTT 133 (Mism.= 0) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 2 79 CCACTTG 73 (Mism.= 0) 11 CCACTTG 5 (Mism.= 0) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 14 CACCCACTTg 5 (Mism.= 1) TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 71 tCCAAGTGGA 80 (Mism.= 1) TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 211 CAGCTGA 217 (Mism.= 0) TFBS AC: RSP00867//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: GCC-box /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 147 TGCGCCCT 140 (Mism.= 0) TFBS AC: RSP00894//OS: Solanum melongena /GENE: SmCP/TFBS: ERE 2 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00295 Up.Conf.Int. 1 Found 1 239 AATTCAAG 246 (Mism.= 0) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 56 ACCAATCAG 48 (Mism.= 0) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 56 ACCAATCAG 48 (Mism.= 0) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 80 TCCACTTGg 72 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 2 79 CCACTTG 73 (Mism.= 0) 11 CCACTTG 5 (Mism.= 0) TFBS AC: RSP02973//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI1/TFBS: O-box (ABI1) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00379 Up.Conf.Int. 1 Found 1 65 TcTCCGTCCAAg 76 (Mism.= 2) Totally 15 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0398..AC:M80938.1..OS:Oryza sativa (japonica cultivar-group)..GENE:Oshsp16.9A..PROD:16.9 kDa heat shock protein..[ -200: +51] ..CDS: +131..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.22 T - 0.18 C - 0.27 TFBS AC: RSP00157//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 163 ATTccTATAAAT 174 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 174 ATTTATAggAAT 163 (Mism.= 2) TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00597 Up.Conf.Int. 1 Found 1 205 gAGgAACACACAAC 218 (Mism.= 2) TFBS AC: RSP00254//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: Py box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 67 CCTTTTC 73 (Mism.= 0) TFBS AC: RSP00337//OS: soybean (Glycine max) /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/TFBS: SEF1 BS /BF: SEF1 Motifs on "-" Strand: Mean Exp. Number 0.00503 Up.Conf.Int. 1 Found 1 176 ATATTTATA 168 (Mism.= 0) TFBS AC: RSP00676//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: PY-Box /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 67 CCTTTTC 73 (Mism.= 0) TFBS AC: RSP00939//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 1 186 agCGGTGCACAT 175 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP02446//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS1 /BF: HB05; HB12 Motifs on "+" Strand: Mean Exp. Number 0.00947 Up.Conf.Int. 1 Found 1 1 CAATCATTg 9 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 168 TATAAATA 175 (Mism.= 0) TFBS AC: RSP02909//OS: wheat (Triticum aestivum) /GENE: Synthetic oligonucleotides/TFBS: HDZ1 /BF: TaHDZipI-3; TaHDZipI-4; TaHDZipI-5 Motifs on "+" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 1 CAATCATTG 9 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 9 CAATGATTG 1 (Mism.= 0) Totally 12 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0399..AC:X06928..OS:Glycine max..GENE:lox-3..PROD:lipoxygenase-3..[ -200: +51] ..CDS: +52 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.34 C - 0.18 TFBS AC: RSP00016//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 72 CATGCAC 78 (Mism.= 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 171 TATAAATACCAc 182 (Mism.= 1) TFBS AC: RSP01715//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF6 (At1g30330)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00711 Up.Conf.Int. 1 Found 1 73 AtgCACGTATAT 84 (Mism.= 2) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 182 GTGGTATTTA 173 (Mism.= 2) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "+" Strand: Mean Exp. Number 0.00644 Up.Conf.Int. 1 Found 1 79 GtATATGACaGT 90 (Mism.= 2) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0400..AC:AJ238785.1..OS:Zea mays..GENE:mus1..PROD:putative DNA mismatch repair protein..[ -200: +51] ..CDS: +80..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.18 T - 0.22 C - 0.33 TFBS AC: RSP00015//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtCDC6/TFBS: E2F1-BE /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 171 TTTCCCGC 178 (Mism.= 0) TFBS AC: RSP00157//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 20 ATTTATATAAta 31 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 31 taTTATATAAAT 20 (Mism.= 2) TFBS AC: RSP00165//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fa /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 171 TTTCCCGC 178 (Mism.= 0) TFBS AC: RSP00298//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-1 /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 171 TTTCCCGC 178 (Mism.= 0) TFBS AC: RSP00337//OS: soybean (Glycine max) /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/TFBS: SEF1 BS /BF: SEF1 Motifs on "+" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 18 ATATTTATA 26 (Mism.= 0) TFBS AC: RSP00565//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: AT-rich G /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 65 GTATTTT 71 (Mism.= 0) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00885 Up.Conf.Int. 1 Found 1 57 AgACCACTGTaT 68 (Mism.= 2) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 36 AAcAGGTTAtAA 47 (Mism.= 2) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 17 AATATTTaTATa 28 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00495 Up.Conf.Int. 1 Found 1 80 gGAGAGAGA 88 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 80 GGAGAGAGA 88 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 41 gTTATAAgTTTTT 53 (Mism.= 2) TFBS AC: RSP01114//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 73 CCAAAAT 67 (Mism.= 0) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00302 Up.Conf.Int. 1 Found 1 51 TTTCAAAG 58 (Mism.= 0) TFBS AC: RSP01679//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Qualt. Seq.) /BF: Unknown nuclear proteins Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 143 AAACGgGgCTTT 132 (Mism.= 2) TFBS AC: RSP01878//OS: tomato (Lycopersicon esculentum) /GENE: LeACS2/TFBS: LeCp BS /BF: LeCp Motifs on "-" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 13 TAAAATAT 6 (Mism.= 0) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 32 AtATTATATA 23 (Mism.= 1) TFBS AC: RSP02318//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CENH3/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 178 GCGGGAAA 171 (Mism.= 0) TFBS AC: RSP02407//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ASF1B/TFBS: E2F BS (-138) /BF: E2Fa/DPa; E2Fe; E2Ff Motifs on "-" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 159 TCTCGCGCg 151 (Mism.= 1) TFBS AC: RSP02765//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS3 (MYB63) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00691 Up.Conf.Int. 1 Found 1 12 TACCAAAT 19 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 26 TATAAATA 19 (Mism.= 0) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "-" Strand: Mean Exp. Number 0.00619 Up.Conf.Int. 1 Found 1 87 CTCTCTCcC 79 (Mism.= 1) TFBS AC: RSP02951//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/2 /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 172 TTCCCGCCA 180 (Mism.= 0) Totally 24 motifs of 23 different TFBSs have been found ____________________________________________________________ >PLPR0401..AC:X01104..OS:Glycine max..GENE:hs6871..PROD:heat-shock protein..[ -200: +51] ..CDS: +104..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.20 T - 0.30 C - 0.19 TFBS AC: RSP00205//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 7 GTcTGGTTAAgATG 20 (Mism.= 2) TFBS AC: RSP00857//OS: maize (Zea mays) /GENE: H4C7/TFBS: NON /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 21 CCATCTtAAC 12 (Mism.= 1) TFBS AC: RSP00942//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00401 Up.Conf.Int. 1 Found 1 7 GTcTGGTTAAgATGG 21 (Mism.= 2) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 1 71 AGAAACAT 64 (Mism.= 0) TFBS AC: RSP01084//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE1 /BF: HaDREB2 Motifs on "-" Strand: Mean Exp. Number 0.00936 Up.Conf.Int. 1 Found 1 48 ACCGCAACT 40 (Mism.= 0) TFBS AC: RSP01284//OS: soybean (Glycine max) /GENE: hsp17.3-B/TFBS: HSE-like motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 125 GCATAACAAGGACTTTCTCGAAAGTACTATATTGCT 160 (Mism.= 0) TFBS AC: RSP01333//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Box II, wild) /BF: BGTF Motifs on "+" Strand: Mean Exp. Number 0.00109 Up.Conf.Int. 1 Found 1 6 TGTcTGGTTAAgATG 20 (Mism.= 2) TFBS AC: RSP01440//OS: Agrobacterium rhizogenes /GENE: rolC/TFBS: LRE /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 6 TgtcTGGTTAAGATG 20 (Mism.= 3) TFBS AC: RSP01595//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box II /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00401 Up.Conf.Int. 1 Found 1 7 GTcTGGTTAAgATGG 21 (Mism.= 2) TFBS AC: RSP01809//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GT-1bx /BF: GmGT-2A Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 7 GTcTGGTTAAgATG 20 (Mism.= 2) TFBS AC: RSP02516//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-2 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 1 40 TaGAAGTTTCgG 29 (Mism.= 2) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0402..AC:M96324.1..OS:Lycopersicon esculentum..GENE:LCA1..PROD:Ca2+-ATPase..[ -200: +51] ..CDS: +72..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.34 C - 0.13 TFBS AC: RSP00544//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 15/GT-1 N1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 213 ATGAGaTTATTGa 225 (Mism.= 2) TFBS AC: RSP00962//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GLM1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00872 Up.Conf.Int. 1 Found 1 27 TGAGTAG 21 (Mism.= 0) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 158 TCCAtCCATCCc 147 (Mism.= 2) TFBS AC: RSP01162//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: TATA/dyad motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 80 TATAAAGAAaTTC 92 (Mism.= 1) TFBS AC: RSP01742//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY11) BS4 /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 109 TGtTTGACTcTCA 121 (Mism.= 2) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 142 TATGTGGCA 134 (Mism.= 0) TFBS AC: RSP02108//OS: Sesbania rostrata /GENE: Srglb3/TFBS: ATRE-BS2* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00610 Up.Conf.Int. 1 Found 1 68 taTTTTAAATTgTTAATTAt 49 (Mism.= 4) TFBS AC: RSP02721//OS: rice (Oryza sativa) /GENE: AK065090/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00971 Up.Conf.Int. 1 Found 1 198 TACAAGTATTa 188 (Mism.= 1) TFBS AC: RSP02978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLC/TFBS: ABI4 BS /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 134 TGCCACAt 141 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0403..AC:M96324.1..OS:Lycopersicon esculentum..GENE:LCA1..PROD:Ca2+-ATPase..[ -200: +51] ..CDS:+1392..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.37 C - 0.18 TFBS AC: RSP00006//OS: soybean (Glycine max) /GENE: GS15/TFBS: ATRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00357 Up.Conf.Int. 1 Found 1 104 AAATTATTTTtTAT 91 (Mism.= 1) TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 166 GACAaGTAGA 157 (Mism.= 1) TFBS AC: RSP00368//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: tef-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 204 AaGGaCATtATGGTAA 219 (Mism.= 3) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 143 TACGcGTACGgC 154 (Mism.= 2) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "-" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 23 AATGACGTTT 14 (Mism.= 0) TFBS AC: RSP02218//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE1 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 14 AAACGTCA 21 (Mism.= 0) TFBS AC: RSP02875//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS2 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 61 GGAAGTCATTag 50 (Mism.= 2) TFBS AC: RSP02892//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 175 GtaGCCGGAGA 165 (Mism.= 2) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0404..AC:AF072725.1..OS:Zea mays..GENE:Ae..PROD:starch branching enzyme IIb..[ -200: +51] ..CDS: +100..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.13 G - 0.28 T - 0.17 C - 0.43 TFBS AC: RSP02510//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR1/TFBS: AtSGR1-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00920 Up.Conf.Int. 1 Found 1 87 TCATGCAG 94 (Mism.= 1) TFBS AC: RSP02512//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR2/TFBS: AtSGR2-RY /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 87 TCATGCAG 94 (Mism.= 0) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 192 CTAATTGTAG 201 (Mism.= 2) Totally 3 motifs of 3 different TFBSs have been found ____________________________________________________________ >PLPR0405..AC:U63117.1..OS:Lycopersicon esculentum..GENE:tomloxA..PROD:lipoxygenase tomloxA..[ -200: +51] ..CDS: +57..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.11 T - 0.42 C - 0.12 TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00983 Up.Conf.Int. 1 Found 2 125 AAgAtTAATAATAATAAAcA 106 (Mism.= 3) 122 AtTAATAATAATAAacAATA 103 (Mism.= 3) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 49 TTTGtTgTTGTaATTT 34 (Mism.= 3) TFBS AC: RSP00799//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: SURE CON /BF: SURF Motifs on "-" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 127 TAAAGATTAaTAATAatAA 109 (Mism.= 3) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 76 TACACGTtCT 67 (Mism.= 1) TFBS AC: RSP01331//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CArG3 (AGL15) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 1 136 TTgCTAgcTATAGTAA 151 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 1 151 TTACTATAgcTAGcAA 136 (Mism.= 3) TFBS AC: RSP01332//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DTA4/TFBS: CArG3 (DTA4) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 1 136 TTgCTAgcTATAGTAA 151 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 1 151 TTACTATAgcTAGcAA 136 (Mism.= 3) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 62 TCCACTTtT 54 (Mism.= 1) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00469 Up.Conf.Int. 1 Found 1 77 TTACACGTtcTT 66 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 176 CtATTTATAG 167 (Mism.= 1) TFBS AC: RSP02710//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 2 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00141 Up.Conf.Int. 1 Found 1 191 ATGGAAAtGAG 181 (Mism.= 1) TFBS AC: RSP02744//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmPHD BS /BF: GmPHD1; GmPHD2; GmPHD3; GmPHD4; GmPHD5 Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 58 GTGGAG 63 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 167 CTATAAATAG 176 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 176 CTATTTATAG 167 (Mism.= 0) Totally 16 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0406..AC:U63118.1..OS:Lycopersicon esculentum..GENE:tomloxB..PROD:lipoxygenase tomloxB..[ -200: +51] ..CDS: +65..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.41 C - 0.14 TFBS AC: RSP00129//OS: maize (Zea mays) /GENE: Bronze2/TFBS: R-motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00835 Up.Conf.Int. 1 Found 1 200 CACGAC 205 (Mism.= 0) TFBS AC: RSP00514//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: BOX 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 49 TGACaTcACCaTCAT 63 (Mism.= 3) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00772 Up.Conf.Int. 1 Found 1 138 CAGAATAA 145 (Mism.= 0) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 50 GACaTcACCATCATt 64 (Mism.= 3) TFBS AC: RSP01103//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: AC1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 194 AAACCTCA 201 (Mism.= 0) TFBS AC: RSP02098//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE4 /BF: tomato HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 140 GAATAATTC 148 (Mism.= 0) TFBS AC: RSP02186//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp29/V /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 184 TTTaAACTCgAAA 196 (Mism.= 2) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 143 ATTCTGACAAAT 132 (Mism.= 0) TFBS AC: RSP02750//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX14/TFBS: MYB46 BS (IRX14) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 100 TACCAAAC 107 (Mism.= 0) TFBS AC: RSP02761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS1 (MYB58) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 100 TACCAAAC 107 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0407..AC:AB026837.1..OS:Oryza sativa..GENE:OsPSK..PROD:preprophytosulfokine..[ -200: +51] ..CDS: +102..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.27 C - 0.24 TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 2 169 AGCAAAGCAA 178 (Mism.= 0) 174 AGCAAAGaAA 183 (Mism.= 1) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 201 GAAgAAGCAgcAGCAA 216 (Mism.= 3) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 212 TgcTGCTTcTTCTTTC 197 (Mism.= 3) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 4 117 AGAGAGAGA 109 (Mism.= 0) 115 AGAGAGAGA 107 (Mism.= 0) 113 AGAGAGAGA 105 (Mism.= 0) 111 AGAGAGAGA 103 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 119 GGAGAGAGA 111 (Mism.= 0) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00891 Up.Conf.Int. 1 Found 1 179 AGAAACAA 186 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 3 120 tgGAGAGAGAGAGAGAg 104 (Mism.= 3) 118 GAGAGAGAGAGAGAGAc 102 (Mism.= 1) 116 GAGAGAGAGAGAGAcAt 100 (Mism.= 2) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 98 CgATGTCTCT 107 (Mism.= 1) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "+" Strand: Mean Exp. Number 0.00723 Up.Conf.Int. 1 Found 1 197 GAaAGaAGAAGC 208 (Mism.= 2) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 43 GGCCACT 49 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 2 188 GAAGAAGAA 196 (Mism.= 0) 191 GAAGAAGAA 199 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 5 98 CgaTgTCTCTCTCTCT 113 (Mism.= 3) 100 aTgTCTCTCTCTCTCT 115 (Mism.= 2) 102 gTCTCTCTCTCTCTCT 117 (Mism.= 1) 104 CTCTCTCTCTCTCTCc 119 (Mism.= 1) 106 CTCTCTCTCTCTCcag 121 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 119 GGAGAGAGAG 110 (Mism.= 0) Totally 24 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0408..AC:D86594.1..OS:Canavalia gladiata..GENE:CgHMGY1..PROD:high mobility group protein..[ -200: +51] ..CDS: +429..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.49 G - 0.10 T - 0.28 C - 0.13 TFBS AC: RSP00166//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fb /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 91 TTTGCCGg 98 (Mism.= 1) TFBS AC: RSP00652//OS: maize (Zea mays) /GENE: a1/TFBS: C1 DBS /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 95 CCGGTAGa 102 (Mism.= 1) TFBS AC: RSP01103//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: AC1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 196 AAACCTCA 203 (Mism.= 0) TFBS AC: RSP01168//OS: Vicia faba /GENE: LeB4/TFBS: GC element /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 234 AgGGTCCCT 242 (Mism.= 1) TFBS AC: RSP02014//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_1) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 52 TACAAATGAT 61 (Mism.= 0) TFBS AC: RSP02631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR2/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 77 aAAAATATCTAAA 89 (Mism.= 1) TFBS AC: RSP02712//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 4 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 126 TCCtAAAGCtT 116 (Mism.= 2) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0409..AC:X87323.1..OS:Capsicum annuum..GENE:PCEL1 (cellulase)..PROD:beta-1,4-endoglycanohydrolase..[ -200: +51] ..CDS: +74..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.34 C - 0.14 TFBS AC: RSP00039//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT56; LAT59;/TFBS: 56/59 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 89 TtAATTTGTGA 99 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 170 TATAAATACCAc 181 (Mism.= 1) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00592 Up.Conf.Int. 1 Found 1 87 TTTtAaTTTGTGATTg 102 (Mism.= 3) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 28 AGAGAGaAA 36 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00828 Up.Conf.Int. 1 Found 1 28 AGAGAGAaA 36 (Mism.= 1) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01497//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS5 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 4 GCCcTCGaAT 13 (Mism.= 2) TFBS AC: RSP01498//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS5 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 4 GCCcTCGaAT 13 (Mism.= 2) TFBS AC: RSP02011//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_1) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 159 ctCACATGCC 168 (Mism.= 2) TFBS AC: RSP02012//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 168 GgCATGTGAg 159 (Mism.= 2) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 181 GTGGTATTTA 172 (Mism.= 2) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00404 Up.Conf.Int. 1 Found 1 2 CGGCCCt 8 (Mism.= 1) TFBS AC: RSP02304//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS1 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 235 TTTaTGACTATT 224 (Mism.= 1) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00741 Up.Conf.Int. 1 Found 1 159 CTCACaTGCc 168 (Mism.= 2) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0410..AC:X13509.1..OS:Ipomoea batatas Lam. cv...GENE:gSPO-A1..PROD:sporamin A..[ -200: +51] ..CDS: +72..TSS:201 (+1)... |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.11 T - 0.28 C - 0.22 TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 186 CATGCATG 193 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 193 CATGCATG 186 (Mism.= 0) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00904 Up.Conf.Int. 1 Found 1 193 CaTgCATGCAT 183 (Mism.= 2) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 185 GCATGCATGa 194 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 194 tCATGCATGC 185 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 186 CATGCATG 193 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 193 CATGCATG 186 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 186 CATGCATG 193 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 193 CATGCATG 186 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 194 TCATGCATGc 185 (Mism.= 1) TFBS AC: RSP01604//OS: sweet potato (Ipomoea batatas) /GENE: Sporamin; beta-amylase/TFBS: SP8a /BF: SPF1 Motifs on "+" Strand: Mean Exp. Number 0.00220 Up.Conf.Int. 1 Found 1 42 ACTGTGTA 49 (Mism.= 0) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00496 Up.Conf.Int. 1 Found 1 121 TttTGCTTTTtTCTT 107 (Mism.= 3) TFBS AC: RSP01744//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCMPG1 (At3g02840)/TFBS: WRKY11 BS /BF: WRKY11 Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 41 gATTGACCGaTG 30 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 181 CaATTTATAG 172 (Mism.= 1) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 161 TCTCTTGTTGT 171 (Mism.= 2) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 161 TCTCTTGTTGT 171 (Mism.= 2) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 161 TCTCTTGTTGT 171 (Mism.= 2) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 161 TCTCTTGTTGT 171 (Mism.= 2) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00146 Up.Conf.Int. 1 Found 1 161 TCTCTTGTTGT 171 (Mism.= 1) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 186 CATGCATG 193 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 193 CATGCATG 186 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 186 CATGCATG 193 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 193 CATGCATG 186 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 172 CTATAAATTG 181 (Mism.= 1) Totally 24 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0411..AC:X13510.1..OS:Ipomoea batatas Lam. cv...GENE:gSPO-B1..PROD:sporamin B..[ -200: +51] ..CDS: +67..TSS:201 (+1)... |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.25 C - 0.24 TFBS AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 185 CATGCAA 179 (Mism.= 0) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 182 CATGCATG 189 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 189 CATGCATG 182 (Mism.= 0) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "+" Strand: Mean Exp. Number 0.00610 Up.Conf.Int. 1 Found 1 53 aTaAAATTATTTAaTT 68 (Mism.= 3) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 101 GCtACGTCgT 92 (Mism.= 2) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 181 GCATGCATGa 190 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 190 TCATGCATGC 181 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 182 CATGCATG 189 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 189 CATGCATG 182 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 182 CATGCATG 189 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 189 CATGCATG 182 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 51 TCtCATGTGT 42 (Mism.= 1) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 190 TCATGCATGc 181 (Mism.= 1) TFBS AC: RSP02014//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_1) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00679 Up.Conf.Int. 1 Found 1 108 TACAAATGcT 99 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 181 CAATTTATAG 172 (Mism.= 1) TFBS AC: RSP02197//OS: tomato (Lycopersicon esculentum) /GENE: LeEXP1/TFBS: CArG (LeEXP1) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 181 CAATTTATAG 172 (Mism.= 1) TFBS AC: RSP02512//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSGR2/TFBS: AtSGR2-RY /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00998 Up.Conf.Int. 1 Found 1 190 TCATGCAt 183 (Mism.= 1) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 182 CATGCATG 189 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 189 CATGCATG 182 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 182 CATGCATG 189 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 189 CATGCATG 182 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 172 CTATAAATTG 181 (Mism.= 1) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "+" Strand: Mean Exp. Number 0.00674 Up.Conf.Int. 1 Found 1 103 TTTGTaaTATT 113 (Mism.= 2) Totally 23 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0412..AC:AF025434.1..OS:Papaver somniferum..GENE:tydc7..PROD:tyrosine/dopa decarboxylase..[ -200: +51] ..CDS: +103..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.10 T - 0.29 C - 0.22 TFBS AC: RSP00022//OS: pea, Pisum sativum /GENE: petE/TFBS: A/T-rich BOX1 /BF: PCF1 Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 14 ATAATAAAA 6 (Mism.= 0) TFBS AC: RSP00144//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: SEF3 BS 1 /BF: SEF3 Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 96 CACCCA 91 (Mism.= 0) TFBS AC: RSP00187//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: CCACC box /BF: seed-specific protein Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 97 CCACC 93 (Mism.= 0) TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 57 CAtcTGGCACT 47 (Mism.= 2) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 228 TTTTGtTTTTctTTTC 213 (Mism.= 3) TFBS AC: RSP00576//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: AT-rich FF1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00478 Up.Conf.Int. 1 Found 1 81 TtTtTtTAATTATTATTgTA 62 (Mism.= 4) TFBS AC: RSP00640//OS: maize (Zea mays) /GENE: GRF1/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 86 TCACGTGG 93 (Mism.= 0) TFBS AC: RSP00641//OS: maize (Zea mays) /GENE: GRF2/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 86 TCACGTGG 93 (Mism.= 0) TFBS AC: RSP00654//OS: spinach (Spinacia oleracea) /GENE: PetH/TFBS: CT-B /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 96 CACCCACgTg 87 (Mism.= 2) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 94 cCCACGTGaA 85 (Mism.= 2) TFBS AC: RSP00797//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: SURE-1 /BF: SURF Motifs on "+" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 1 209 TAAAGAAaAGAAAAAcaAA 227 (Mism.= 3) TFBS AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/TFBS: PLE-79 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 244 AGCAAGA 238 (Mism.= 0) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 86 tCACGTGG 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 93 CCACGTGa 86 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 86 tCACGTGG 93 (Mism.= 1) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 86 TcACGTGG 93 (Mism.= 1) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 86 TcACGTGG 93 (Mism.= 1) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 84 TttCACGTGGGT 95 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00241 Up.Conf.Int. 1 Found 1 85 TtCACGTGGg 94 (Mism.= 2) TFBS AC: RSP02107//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 96 CACCCA 91 (Mism.= 1) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 85 ttCACGTGGG 94 (Mism.= 2) TFBS AC: RSP02140//OS: maize (Zea mays) /GENE: F5H/TFBS: MBS-1 /BF: ZmMYB31 Motifs on "-" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 98 TCCACC 93 (Mism.= 0) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 86 tCACGTGG 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 93 CCACGTGa 86 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 86 tCACGTGG 93 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 93 cCACGTGA 86 (Mism.= 1) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 93 CCACGT 88 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 93 CCACGT 88 (Mism.= 0) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00796 Up.Conf.Int. 1 Found 1 92 CACGTGAa 85 (Mism.= 1) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 87 CACGTGGg 94 (Mism.= 1) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 94 GTGGaACtGG 103 (Mism.= 2) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 88 ACGTGG 93 (Mism.= 0) TFBS AC: RSP02888//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/GATA/MADS/3RMYB/NAC BS /BF: bHLH, GATA, MADS, 3RMYB, NAC Motifs on "+" Strand: Mean Exp. Number 0.00959 Up.Conf.Int. 1 Found 1 87 cACGTGGG 94 (Mism.= 1) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 85 tTCACGTGGg 94 (Mism.= 2) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 86 TcACGTGG 93 (Mism.= 1) Totally 35 motifs of 33 different TFBSs have been found ____________________________________________________________ >PLPR0413..AC:AF025430.1..OS:Papaver somniferum..GENE:bbe1..PROD:berberine bridge enzyme..[ -200: +51] ..CDS: +23..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.20 T - 0.29 C - 0.23 TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 93 ACGCGTtTaCTC 104 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 52 TGACAtGTaGCA 63 (Mism.= 2) TFBS AC: RSP00366//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: ERE /BF: TDBA12 Motifs on "-" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 91 TGACTTTCTcAa 80 (Mism.= 2) TFBS AC: RSP00551//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: TSS BB1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 126 CTAATAAaaTgTTAG 140 (Mism.= 3) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 200 AGAAAGAAA 192 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 63 TGCtACaTGTCA 52 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 144 tgCACGTGCC 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 153 GgCACGTGCa 144 (Mism.= 2) TFBS AC: RSP02035//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YUC8 (At4g28720)/TFBS: STY1 BS (YUC8) /BF: STY1 Motifs on "-" Strand: Mean Exp. Number 0.00414 Up.Conf.Int. 1 Found 1 145 CAACTCTAAca 135 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 144 TgCACGTGcC 153 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 113 TgCACGTGGg 104 (Mism.= 2) TFBS AC: RSP02220//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE3 (FHL) /BF: Motifs on "+" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 145 GCACGTGC 152 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 152 GCACGTGC 145 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 112 GCACGTGG 105 (Mism.= 0) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00991 Up.Conf.Int. 1 Found 2 104 CcCACGTGCa 113 (Mism.= 2) 144 tgCACGTGCC 153 (Mism.= 2) Totally 16 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0414..AC:AB017153.1..OS:Atropa belladonna..GENE:AbH6H..PROD:hyoscyamine 6 beta-hydroxylase..[ -200: +51] ..CDS: +73..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.38 C - 0.16 TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00895 Up.Conf.Int. 1 Found 1 91 CcTCCATtCAT 81 (Mism.= 2) TFBS AC: RSP00602//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: 2&3 C /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00493 Up.Conf.Int. 1 Found 1 209 TTCACCATATcCacA 223 (Mism.= 3) TFBS AC: RSP00858//OS: pea, Pisum sativum /GENE: pra2/TFBS: GT2 /BF: DF1 Motifs on "+" Strand: Mean Exp. Number 0.00806 Up.Conf.Int. 1 Found 1 5 GGTAATTA 12 (Mism.= 0) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 238 AGAAAGAAA 230 (Mism.= 0) TFBS AC: RSP00876//OS: arabidopsis (Arabidopsis thaliana) /GENE: MCM3/TFBS: Site 1 E2F (D1) /BF: AtE2F Motifs on "+" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 101 CGtGCCAAA 109 (Mism.= 1) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00641 Up.Conf.Int. 1 Found 1 33 ATCAAtAACC 24 (Mism.= 1) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 44 CAAATGAAAG 35 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 176 CTATTTATAG 167 (Mism.= 1) TFBS AC: RSP02831//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHSP70-4/TFBS: E2F2 BS /BF: E2F2 Motifs on "+" Strand: Mean Exp. Number 0.00627 Up.Conf.Int. 1 Found 1 101 CGTGCCAAA 109 (Mism.= 1) TFBS AC: RSP02913//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 106 GGCACGTTAa 97 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00883 Up.Conf.Int. 1 Found 1 167 CTATAAATAG 176 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 176 CTATTTATAG 167 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0415..AC:AJ224116.1..OS:Helianthus annuus..GENE:ds10 (lea group 1)..PROD:late embryogenesis-abundant protein..[ -200: +51] ..CDS: +33..TSS:201 (+1) # Alternative TSS(s): +9 |Taxon: Dicot |Promo Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.13 T - 0.25 C - 0.26 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00830 Up.Conf.Int. 1 Found 1 49 ACACGTGtC 41 (Mism.= 1) TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00223 Up.Conf.Int. 1 Found 1 49 ACaCGTGTCCTC 38 (Mism.= 1) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 112 CATGCA 107 -- 6-- 100 CACGTG 95 (Mism.= 0/ 0) TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 105 CATGCATG 112 (Mism.= 0) 169 CATGCATG 176 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 176 CATGCATG 169 (Mism.= 0) 112 CATGCATG 105 (Mism.= 0) TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00953 Up.Conf.Int. 1 Found 1 88 TGACGTGGT 80 (Mism.= 1) TFBS AC: RSP00214//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: Hex motif /BF: TGA1; GBF1; Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 88 TGACGTGG 81 (Mism.= 0) TFBS AC: RSP00215//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Hex /BF: HBP-11(17); HBP-1b(c38); Motifs on "+" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 81 CCACGTCA 88 (Mism.= 0) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 103 TGgCACGTGGtA 92 (Mism.= 2) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00232 Up.Conf.Int. 1 Found 1 50 TaCACGTGTC 41 (Mism.= 1) TFBS AC: RSP00479//OS: tobacco (Nicotiana tabacum) /GENE: ZGT/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 39 AGGACACGTGTatC 52 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 42 ACACGTG 48 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 49 ACACGTG 43 (Mism.= 0) TFBS AC: RSP00597//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: GT-1/16 JJ1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00545 Up.Conf.Int. 1 Found 1 208 GTTAAgTTGTGT 197 (Mism.= 1) TFBS AC: RSP00615//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: C-rich GG1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 40 CTCACC 35 (Mism.= 0) TFBS AC: RSP00674//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 2 /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 19 CAACCtAACgACTT 32 (Mism.= 2) TFBS AC: RSP00724//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I/G-box /BF: HY5 and other unknown transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00041 Up.Conf.Int. 1 Found 1 125 GAgAAGA 119 --18-- 100 CACGTGGt 93 (Mism.= 1/ 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 90 GATGACGTGG 81 (Mism.= 1) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 90 GATGACGTGG 81 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 92 TaCCACGTGcCA 103 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00466 Up.Conf.Int. 1 Found 1 103 TGgCACGTGGtA 92 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00573 Up.Conf.Int. 1 Found 1 93 acCACGTGCC 102 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 93 aCCACGTGcC 102 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 50 TACACGTGTC 41 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 102 GGCACGTGgT 93 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 41 gACACGTGtA 50 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 50 TACACGTGtc 41 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00922 Up.Conf.Int. 1 Found 1 41 gACACGTGtA 50 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 50 TACACGTGtc 41 (Mism.= 2) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00770 Up.Conf.Int. 1 Found 1 90 GATGACGTGG 81 (Mism.= 1) TFBS AC: RSP01003//OS: snapdragon (Antirrhinum majus) /GENE: DEFH125/TFBS: CArG1 /BF: DEF/GLO Motifs on "-" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 193 ACAATTgAGG 184 (Mism.= 1) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 47 ACGTGTC 41 (Mism.= 0) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 2 104 aCATGCATGC 113 (Mism.= 1) 168 aCATGCATGt 177 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 2 177 aCATGCATGt 168 (Mism.= 2) 113 GCATGCATGt 104 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 41 GACACGTGTA 50 (Mism.= 2) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 50 tACACGTGtC 41 (Mism.= 2) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 105 CATGCATG 112 (Mism.= 0) 169 CATGCATG 176 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 176 CATGCATG 169 (Mism.= 0) 112 CATGCATG 105 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00713 Up.Conf.Int. 1 Found 1 147 CTaTATATAT 156 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 42 ACACGTGT 49 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 49 ACACGTGT 42 (Mism.= 0) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 88 TGACGTGG 81 (Mism.= 0) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00520 Up.Conf.Int. 1 Found 1 80 aCCACGTCAT 89 (Mism.= 1) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 105 CATGCATG 112 (Mism.= 0) 169 CATGCATG 176 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 176 CATGCATG 169 (Mism.= 0) 112 CATGCATG 105 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 168 aCATGCATGT 177 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 2 177 aCATGCATGT 168 (Mism.= 1) 113 gCATGCATGT 104 (Mism.= 1) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 88 TGACGTGG 81 (Mism.= 0) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 51 ATaCACGTGTCc 40 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00573 Up.Conf.Int. 1 Found 2 41 GaCACGTGTa 50 (Mism.= 2) 93 aCCACGTGcC 102 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 50 taCACGTGTC 41 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 41 GACACGTGTa 50 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00668 Up.Conf.Int. 1 Found 1 50 tACACGTGTC 41 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "-" Strand: Mean Exp. Number 0.00166 Up.Conf.Int. 1 Found 1 103 TGgCACGTGGtA 92 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 94 CCACGTGcCa 103 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00563 Up.Conf.Int. 1 Found 1 49 aCACGTGtCC 40 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 93 ACCACGTGCC 102 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 50 taCACGTGTC 41 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 41 gACACGTGTA 50 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 50 tACACGTGTc 41 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00121 Up.Conf.Int. 1 Found 1 41 GACACGTG 48 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 50 tACACGTGtC 41 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00573 Up.Conf.Int. 1 Found 1 93 aCCACGTGcC 102 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 50 TACACGTGTC 41 (Mism.= 2) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 101 GCACGTGG 94 (Mism.= 0) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 42 ACACGTGT 49 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 49 ACACGTGT 42 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 41 GaCACGTGTa 50 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 102 GgCACGTGgT 93 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 41 GACACGTGtA 50 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 102 GgCACGTGGt 93 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 50 tACACGTGTC 41 (Mism.= 1) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 42 ACACGTGTAT 51 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 41 gACACGTGTa 50 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00272 Up.Conf.Int. 1 Found 1 50 TACACGTGTc 41 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 41 GACACGTGtA 50 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 102 GgCACGTGGt 93 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00151 Up.Conf.Int. 1 Found 1 41 GACACGTGTa 50 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 41 GACACGTGtA 50 (Mism.= 1) TFBS AC: RSP02525//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 142 ATGTACTA 149 (Mism.= 0) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 100 CACGTGGT 93 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00121 Up.Conf.Int. 1 Found 1 48 CACGTGTC 41 (Mism.= 0) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 168 ACAtGCATGTt 178 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 177 ACAtGCATGTa 167 (Mism.= 2) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 105 CATGCATG 112 (Mism.= 0) 169 CATGCATG 176 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 176 CATGCATG 169 (Mism.= 0) 112 CATGCATG 105 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 105 CATGCATG 112 (Mism.= 0) 169 CATGCATG 176 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 2 176 CATGCATG 169 (Mism.= 0) 112 CATGCATG 105 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 47 ACGTGTC 41 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 41 GACACGTGta 50 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 50 tACACGTGtC 41 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 93 AcCACGTGcC 102 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 50 tACACGTGtC 41 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00818 Up.Conf.Int. 1 Found 1 102 GGCACGTGgT 93 (Mism.= 1) TFBS AC: RSP02912//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00746 Up.Conf.Int. 1 Found 1 102 GGCACGtGgT 93 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 102 ggCACGTGGT 93 (Mism.= 2) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00717 Up.Conf.Int. 1 Found 1 93 acCACGTGCC 102 (Mism.= 2) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 88 TGACGTGG 81 (Mism.= 0) Totally 112 motifs of 72 different TFBSs have been found ____________________________________________________________ >PLPR0416..AC:AF354454.1..OS:Capsicum annuum..GENE:CaSIG4..PROD:putative acyl-CoA-synthetase..[ -200: +51] ..CDS: +117..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.36 C - 0.22 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 90 GGgCGCGTGGt 100 (Mism.= 2) TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 91 GgCGCGTGGt 100 (Mism.= 2) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "-" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 99 CCACGcGcCC 90 (Mism.= 2) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "-" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 99 CCACGcGcCC 90 (Mism.= 2) TFBS AC: RSP00535//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: LRE-TATA AA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 159 GCCT 162 -- 6-- 169 TATATA 174 (Mism.= 0/ 0) TFBS AC: RSP00867//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: GCC-box /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 96 cGCGCCCT 89 (Mism.= 1) TFBS AC: RSP01006//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 1 (AC-II) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 100 ACCACGC 94 (Mism.= 1) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00947 Up.Conf.Int. 1 Found 1 177 cCTCACCcACCG 188 (Mism.= 2) TFBS AC: RSP01217//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL2 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 163 CCAATCTATATA 174 (Mism.= 1) TFBS AC: RSP01559//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AVP1/TFBS: AtCAMTA1/AtCAMTA5 BS /BF: AtCAMTA1; AtCAMTA5 Motifs on "-" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 97 ACGCGC 92 (Mism.= 0) TFBS AC: RSP01686//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE D /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 106 CACACA 101 (Mism.= 0) TFBS AC: RSP02214//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: FHY3/FAR1 BS (FHY1) /BF: FHY3/FAR1 Motifs on "-" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 98 CACGCGC 92 (Mism.= 0) TFBS AC: RSP02215//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: FHY3/FAR1 BS (FHL) /BF: FHY3/FAR1 Motifs on "-" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 98 CACGCGC 92 (Mism.= 0) TFBS AC: RSP02227//OS: Arabidopsis (Arabidopsis thaliana) /GENE: /TFBS: MYC2/MYC3/MYC4 BS4 /BF: MYC2; MYC3; MYC4 Motifs on "-" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 98 CACGCG 93 (Mism.= 0) TFBS AC: RSP02323//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DGAT1/TFBS: CE1-like (2) /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 181 aCCCACCGATT 191 (Mism.= 1) TFBS AC: RSP02778//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: VOZ2C BS /BF: VOZ2C Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 96 CgCGCCC 90 (Mism.= 1) TFBS AC: RSP02847//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 2 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 97 ACGCgCcCTG 88 (Mism.= 2) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0417..AC:AF144649.1..OS:Pisum sativum..GENE:PsTopII..PROD:topoisomerase II..[ -200: +51] ..CDS: +121..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.09 T - 0.21 C - 0.43 TFBS AC: RSP00456//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif II /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00946 Up.Conf.Int. 1 Found 1 181 TGTTTT 186 (Mism.= 0) TFBS AC: RSP00751//OS: Catharanthus roseus /GENE: STR/TFBS: BN-2 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 195 AcAaCGATAAAA 184 (Mism.= 2) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00680 Up.Conf.Int. 1 Found 1 72 GGAGAGAGA 64 (Mism.= 0) TFBS AC: RSP01343//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: TCGTGT motif /BF: unknown nuclear actor Motifs on "+" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 178 TCGTGT 183 (Mism.= 0) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0418..AC:U85646.1..OS:Nicotiana tabacum..GENE:Nt59..PROD:putative pectate lyase Nt59..[ -200: +51] ..CDS: +206..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.20 T - 0.31 C - 0.15 TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00603 Up.Conf.Int. 1 Found 1 107 AGAAAGAAA 115 (Mism.= 0) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 211 GATGAAATGT 202 (Mism.= 2) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 214 TgTTGTCTCT 223 (Mism.= 1) TFBS AC: RSP02106//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 216 TTGTCTCTT 224 (Mism.= 0) TFBS AC: RSP02163//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS4 /BF: WRKY transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00956 Up.Conf.Int. 1 Found 1 12 TTGACTagTTC 22 (Mism.= 2) TFBS AC: RSP02194//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00816 Up.Conf.Int. 1 Found 1 140 CTATGTTTGG 149 (Mism.= 1) TFBS AC: RSP02467//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: ERE-like /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 16 GTCAAAAT 9 (Mism.= 0) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "+" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 57 AAAGGCAA 64 (Mism.= 0) TFBS AC: RSP02691//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: TCTAA box 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 109 TCTAAAGT 102 (Mism.= 0) TFBS AC: RSP02721//OS: rice (Oryza sativa) /GENE: AK065090/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "+" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 157 cACAAGTATTa 167 (Mism.= 2) TFBS AC: RSP02748//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 2 (IRX8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 151 CACCAAAC 144 (Mism.= 0) TFBS AC: RSP02896//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 150 ACCAAACAT 142 (Mism.= 0) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0419..AC:U83619.1..OS:Arabidopsis thaliana..GENE:At59..PROD:putative pectate lyase At59..[ -200: +51] ..CDS: +111..TSS:201 (+1) # Alternative TSS(s): +9 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.15 T - 0.33 C - 0.21 TFBS AC: RSP00163//OS: soybean (Glycine max) /GENE: synthetic oligonucleotides/TFBS: DR5 /BF: ARF1 Motifs on "+" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 146 CCTTTTcTCTC 156 (Mism.= 1) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 86 TTAAatCAATGG 97 (Mism.= 2) TFBS AC: RSP00285//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box P /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 69 CTCCAAaAAACCC 57 (Mism.= 1) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 78 TGGTCATTTC 69 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 79 aTGGTCAtTTC 69 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 150 TTCTCTCTCCc 160 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 159 GGAGAGAGA 151 (Mism.= 0) TFBS AC: RSP01199//OS: Chlorella vulgaris /GENE: NR/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00279 Up.Conf.Int. 1 Found 1 48 AtTTTgGATgCCTTT 34 (Mism.= 3) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 97 CCATTGATTTAA 86 (Mism.= 2) TFBS AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 97 CCATTGATTTAA 86 (Mism.= 2) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 69 GAAaTGACCAt 79 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 69 GAAaTGACCAt 79 (Mism.= 2) TFBS AC: RSP01602//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 117 TCTCAATC 124 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 58 CCAATTATAG 49 (Mism.= 1) TFBS AC: RSP02715//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: AC (DkANR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00220 Up.Conf.Int. 1 Found 1 103 AGaCAACCAT 94 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 49 CTATAAtTGG 58 (Mism.= 1) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0420..AC:AY954394.1..OS:Oryza sativa (japonica cultivar-group)..GENE:rubi3..PROD:polyubiquitin..[ -200: +51] ..CDS:+1207..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.17 G - 0.33 T - 0.21 C - 0.29 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 115 GtACGCGTGGC 125 (Mism.= 1) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 169 TTATATA 175 (Mism.= 0) TFBS AC: RSP00202//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE GRA /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00286 Up.Conf.Int. 1 Found 1 9 CATGCCGCC 1 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 62 GACACGTGtC 71 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00735 Up.Conf.Int. 1 Found 1 71 GACACGTGtC 62 (Mism.= 1) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00813 Up.Conf.Int. 1 Found 1 93 CgtGTGGTGCTG 104 (Mism.= 2) TFBS AC: RSP00479//OS: tobacco (Nicotiana tabacum) /GENE: ZGT/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 60 cGGACACGTGTCGC 73 (Mism.= 1) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 52 TaCgACCATCCA 41 (Mism.= 2) TFBS AC: RSP01122//OS: tomato (Lycopersicon esculentum) /GENE: Synthetic oligonucleotides/TFBS: RBSS5 /BF: ABZ1 Motifs on "+" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 60 cGgACACGTGTCGC 73 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00629 Up.Conf.Int. 1 Found 1 62 GACACGTGTC 71 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 71 GACACGTGTC 62 (Mism.= 1) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 98 CACACGTGtC 89 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 2 63 ACACGTGT 70 (Mism.= 0) 90 ACACGTGT 97 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 2 97 ACACGTGT 90 (Mism.= 0) 70 ACACGTGT 63 (Mism.= 0) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 92 TgTCCATGtAGT 81 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 92 TgTCCATGtAGT 81 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 92 TgTCCATGtAGT 81 (Mism.= 2) TFBS AC: RSP01673//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AT4G17550/TFBS: MYC2 BS (AT4G17550) /BF: MYC2 Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 75 gCGCGACACGTGTCCggT 58 (Mism.= 3) TFBS AC: RSP01772//OS: rice (Oryza sativa) /GENE: PR2/TFBS: WOX11 BS /BF: WOX11 Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 196 TTAATGG 190 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 62 GaCACGTGTC 71 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 71 GaCACGTGTC 62 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 2 62 GACACGTGTC 71 (Mism.= 0) 89 GACACGTGTg 98 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 2 98 cACACGTGTC 89 (Mism.= 1) 71 GACACGTGTC 62 (Mism.= 0) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 186 CTCTCCAT 193 (Mism.= 0) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 2 62 GACACGTG 69 (Mism.= 0) 89 GACACGTG 96 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 71 GACACGTG 64 (Mism.= 0) TFBS AC: RSP02030//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ERSE-I /BF: [bZIP28 + NF-YB3] Motifs on "-" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 111 CCAAT 107 --10-- 96 CACG 93 (Mism.= 0/ 0) TFBS AC: RSP02121//OS: Arabidopsis (Arabidopsis thaliana)GS AGAMOUS (AG) /GENE: ech-42/TFBS: WUS BS /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 196 TTAATGG 190 (Mism.= 0) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 98 CACACGTgTC 89 (Mism.= 1) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 62 GACACGTGTC 71 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 71 GACACGTGTC 62 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "-" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 2 99 CcACACGTGTCc 88 (Mism.= 2) 72 CgACACGTGTCc 61 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 2 63 ACACGTGT 70 (Mism.= 0) 90 ACACGTGT 97 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 2 97 ACACGTGT 90 (Mism.= 0) 70 ACACGTGT 63 (Mism.= 0) TFBS AC: RSP02431//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CT-alpha/TFBS: AW-box (CT-alpha) /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 223 CTTCGgTcGATTCG 210 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 62 gACACGTGTC 71 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 2 98 CACACGTGTC 89 (Mism.= 0) 71 gACACGTGTC 62 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 2 62 GACACGTGTc 71 (Mism.= 1) 89 GACACGTGTg 98 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 71 GACACGTGTc 62 (Mism.= 1) TFBS AC: RSP02540//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KAN2/TFBS: WUS BS 1 (KAN2) /BF: WUS Motifs on "+" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 192 ATTAATCG 199 (Mism.= 0) TFBS AC: RSP02548//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YAB3/TFBS: WUS BS (AS2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00959 Up.Conf.Int. 1 Found 1 197 ATTAATGG 190 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 64 CACGTGTC 71 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 2 96 CACGTGTC 89 (Mism.= 0) 69 CACGTGTC 62 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 62 GACACGTGtC 71 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00432 Up.Conf.Int. 1 Found 1 71 GACACGTGtC 62 (Mism.= 1) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 98 CAcACGTGTC 89 (Mism.= 1) Totally 57 motifs of 34 different TFBSs have been found ____________________________________________________________ >PLPR0421..AC:AF101032.1..OS:Solanum melongena..GENE:SmCP..PROD:cysteine proteinase precursor..[ -200: +51] ..CDS: +55..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.31 C - 0.18 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00513 Up.Conf.Int. 1 Found 1 115 ACACGTGtC 123 (Mism.= 1) TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 249 AATAATAATAAaAAgAAgaA 230 (Mism.= 4) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 114 tACACGTGtC 123 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00714 Up.Conf.Int. 1 Found 1 123 GACACGTGta 114 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 113 TtACACGTGtCA 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 124 TGACACGTGtaA 113 (Mism.= 2) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 114 TaCACGTGTC 123 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00563 Up.Conf.Int. 1 Found 1 115 ACACGTG 121 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00464 Up.Conf.Int. 1 Found 1 122 ACACGTG 116 (Mism.= 0) TFBS AC: RSP00580//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: LRE-TATA AA /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 28 TTATtATTTtATTATA 13 (Mism.= 2) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 200 CCtCTCCTC 192 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00714 Up.Conf.Int. 1 Found 1 123 GaCACGTGtA 114 (Mism.= 2) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 113 TtaCACGTGTCA 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00227 Up.Conf.Int. 1 Found 1 124 TGaCACGTGTaA 113 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 124 TGaCACGTGtAA 113 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 114 TaCACGTGTC 123 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00542 Up.Conf.Int. 1 Found 1 114 TACACGTGtc 123 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00467 Up.Conf.Int. 1 Found 1 123 gACACGTGtA 114 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00542 Up.Conf.Int. 1 Found 1 114 TACACGTGtc 123 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00467 Up.Conf.Int. 1 Found 1 123 gACACGTGtA 114 (Mism.= 2) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00464 Up.Conf.Int. 1 Found 1 117 ACGTGTC 123 (Mism.= 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 123 GACACGTGTA 114 (Mism.= 2) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00993 Up.Conf.Int. 1 Found 2 91 CACACGTatC 100 (Mism.= 2) 114 tACACGTGtC 123 (Mism.= 2) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 115 ACACGTGT 122 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 122 ACACGTGT 115 (Mism.= 0) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 99 ATACGTGT 92 (Mism.= 0) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 113 tTACACGTGTcA 124 (Mism.= 2) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 124 TgACACGTgTAA 113 (Mism.= 2) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 113 TtACACGTGTcA 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 124 TgACACGTGTaA 113 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 114 taCACGTGTC 123 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 123 GaCACGTGTa 114 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 114 tACACGTGTC 123 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 123 GACACGTGTa 114 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00068 Up.Conf.Int. 1 Found 1 113 TtACACGTGtCA 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 124 TGACACGTGtaA 113 (Mism.= 2) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 137 GCCGTTG 131 (Mism.= 0) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00407 Up.Conf.Int. 1 Found 1 114 taCACGTGTC 123 (Mism.= 2) TFBS AC: RSP02019//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBb /BF: MYB Motifs on "-" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 154 GTTAGGTA 147 (Mism.= 0) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 114 tACACGTGTc 123 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 123 gACACGTGTA 114 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 123 GACACGTG 116 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 114 tACACGTGtC 123 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 114 TaCACGTGtC 123 (Mism.= 2) TFBS AC: RSP02117//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: AP-1 BS /BF: AP-1 Motifs on "-" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 144 TGAGTTAG 137 (Mism.= 0) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 91 CACACGTATC 100 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 113 ttACACGTGTCA 124 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 115 ACACGTGT 122 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 122 ACACGTGT 115 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00127 Up.Conf.Int. 1 Found 1 228 GAAGAAGAA 220 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 123 GaCACGTGTa 114 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 123 GACACGTGtA 114 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 114 tACACGTGTC 123 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 123 gACACGTGTa 114 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 114 TACACGTGTc 123 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 123 gACACGTGTa 114 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 123 GACACGTGtA 114 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 123 GACACGTGTa 114 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00508 Up.Conf.Int. 1 Found 1 123 GACACGTGtA 114 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 116 CACGTGTC 123 (Mism.= 0) TFBS AC: RSP02747//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 1 (IRX8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 147 TACCTAAC 154 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00464 Up.Conf.Int. 1 Found 1 117 ACGTGTC 123 (Mism.= 0) TFBS AC: RSP02813//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 2 (EgCAD) /BF: EgMYB2 Motifs on "-" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 154 GTTAGGTA 147 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 114 tACACGTGtC 123 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00335 Up.Conf.Int. 1 Found 1 123 GACACGTGta 114 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 114 tACACGTGtC 123 (Mism.= 2) TFBS AC: RSP02914//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS1 /BF: IpMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 84 TAGCTACCAc 93 (Mism.= 1) Totally 68 motifs of 51 different TFBSs have been found ____________________________________________________________ >PLPR0422..AC:AJ810175.1..OS:Beta vulgaris..GENE:BvPAL..PROD:phenylalanine ammonia lyase..[ -200: +51] ..CDS: +147..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.06 T - 0.29 C - 0.31 TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 41 CaACCAACCCCC 52 (Mism.= 1) TFBS AC: RSP00174//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ATCATC motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00852 Up.Conf.Int. 1 Found 1 97 ATCATC 92 (Mism.= 0) TFBS AC: RSP00241//OS: maize (Zea mays) /GENE: Bronze2/TFBS: C1-motif (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 25 CGGTCA 30 (Mism.= 0) TFBS AC: RSP00295//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CC", comp) /BF: At-TCP20 Motifs on "-" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 124 TGGGCC 119 --13-- 105 GGCCtA 100 (Mism.= 0/ 1) TFBS AC: RSP00297//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II/telo-box (motifs 1 & 2) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "-" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 124 TGGGCC 119 --13-- 105 GGCCtA 100 (Mism.= 0/ 1) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 76 AAAAAAGAaA 85 (Mism.= 1) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 86 TTTTctTTTTTCTTTt 71 (Mism.= 3) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 188 TTCTCTCTCCT 198 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 197 GGAGAGAGA 189 (Mism.= 0) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "+" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 51 CCTTTTTTTG 60 (Mism.= 1) TFBS AC: RSP01227//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00892 Up.Conf.Int. 1 Found 1 132 CcTTACCTACCACa 145 (Mism.= 2) TFBS AC: RSP01231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: A-box (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 27 CCGTTG 22 (Mism.= 0) TFBS AC: RSP01929//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7A element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 23 AACGGT 28 (Mism.= 0) TFBS AC: RSP02082//OS: oomycete, Phytophthora infestans /GENE: Pks1/TFBS: CGTTG motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 27 CCGTTG 22 (Mism.= 0) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00251 Up.Conf.Int. 1 Found 1 77 AAAAAGAAA 85 (Mism.= 0) TFBS AC: RSP02197//OS: tomato (Lycopersicon esculentum) /GENE: LeEXP1/TFBS: CArG (LeEXP1) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 169 CtATTTAAAG 178 (Mism.= 1) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 118 CGGCCCA 124 (Mism.= 0) TFBS AC: RSP02379//OS: wheat (Triticum aestivum) /GENE: GST22/TFBS: TiMYB2R-1 BS /BF: TiMYB2R-1 Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 27 CCGTTG 22 (Mism.= 0) TFBS AC: RSP02707//OS: rice blast fungus (Magnaporthe oryzae) /GENE: COS1-dependent genes/TFBS: A4GA3-motif /BF: COS1 Motifs on "+" Strand: Mean Exp. Number 0.00745 Up.Conf.Int. 1 Found 2 71 AAAAGAAA 78 (Mism.= 0) 78 AAAAGAAA 85 (Mism.= 0) TFBS AC: RSP02858//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 124 TGGGCC 119 (Mism.= 0) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "-" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 125 GTGGGCCG 118 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 169 CTATTTAaAG 178 (Mism.= 1) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 56 TTTTGTCC 63 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00293 Up.Conf.Int. 1 Found 1 56 TTTTGTCC 63 (Mism.= 0) Totally 25 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0423..AC:AY662492.1..OS:Hordeum vulgare subsp. vulgare..GENE:Ltp6..PROD:non-specific lipid transfer protein 6..[ -200: +51] ..CDS: +80..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.16 T - 0.21 C - 0.37 TFBS AC: RSP00092//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: TAACAAA box /BF: GAmyb Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 141 TAACAAA 135 (Mism.= 0) TFBS AC: RSP00156//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 76 TCTtCAcTTACTAGg 62 (Mism.= 3) TFBS AC: RSP00393//OS: rice (Oryza sativa) (Oryza sativa) /GENE: RAmy1A/TFBS: GARE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 141 TAACAAA 135 (Mism.= 0) TFBS AC: RSP00428//OS: pea, Pisum sativum /GENE: Synthetic oligonucleotides/TFBS: Myb1 /BF: Myb26; Myb-like DNA binding protein Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 139 AcAAAACaGTTA 128 (Mism.= 2) TFBS AC: RSP00748//OS: arabidopsis (Arabidopsis thaliana) /GENE: Pc/TFBS: PCbox1 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 147 aAgTGGTAACAA 136 (Mism.= 2) TFBS AC: RSP01051//OS: barley (Hordeum vulgare) /GENE: Amy6.4/TFBS: GARE /BF: GAMYB Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 141 TAACAAA 135 (Mism.= 0) TFBS AC: RSP02675//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: GATA element /BF: Unknown GATA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 72 GAAgAGATAcGT 83 (Mism.= 2) TFBS AC: RSP02838//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ARR10 BS1 /BF: ARR10 Motifs on "+" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 76 AGATACG 82 (Mism.= 0) TFBS AC: RSP02963//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box E /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 22 GCCATCTGCa 31 (Mism.= 1) TFBS AC: RSP02983//OS: birch (Betula platyphylla) /GENE: BpMYB106/TFBS: BpMYB106 BS 2 (BpMYB106) /BF: BpMYB106 Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 141 TAACAAA 135 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0424..AC:U49977.1..OS:Pisum sativum..GENE:SBP65..PROD:seed biotinylated protein..[ -200: +51] ..CDS: +118..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.27 C - 0.29 TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00221 Up.Conf.Int. 1 Found 1 103 ACaCaTGTCCTC 114 (Mism.= 2) TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 92 CACACGTg 85 (Mism.= 1) TFBS AC: RSP00122//OS: pea, Pisum sativum /GENE: AS1/TFBS: Box C /BF: unknown nuclear protein Motifs on "-" Strand: Mean Exp. Number 0.00400 Up.Conf.Int. 1 Found 1 94 CTCaCAC 88 (Mism.= 1) TFBS AC: RSP00190//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: GCN4 box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 65 TGAGTCA 71 (Mism.= 0) TFBS AC: RSP00430//OS: barley (Hordeum vulgare) /GENE: Hor2 gene/TFBS: GSN; hor1-box; /BF: BLZ1; bZIP transcription factor; Motifs on "+" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 90 GTGAGTaAT 98 (Mism.= 1) TFBS AC: RSP00523//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E3-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 91 ACACGTG 85 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 84 ACACGTG 90 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00305 Up.Conf.Int. 1 Found 1 91 ACACGTG 85 (Mism.= 0) TFBS AC: RSP00666//OS: rice (Oryza sativa), Oryza sativa /GENE: GluB-1/TFBS: GCN4 motif /BF: RISBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 65 TGAGTCA 71 (Mism.= 0) TFBS AC: RSP00745//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 5 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 133 GAAAGGTTATTg 122 (Mism.= 1) TFBS AC: RSP00756//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif B /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 94 CTCACACg 87 (Mism.= 1) TFBS AC: RSP00883//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: GZM /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 90 GTGAGTaAT 98 (Mism.= 1) TFBS AC: RSP00959//OS: barley (Hordeum vulgare) /GENE: Hor2/TFBS: GLM2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 65 TGAGTCA 71 (Mism.= 0) TFBS AC: RSP01061//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCN4 motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 64 cTGAGTCAC 72 (Mism.= 1) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 92 CACACGTGtg 83 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 84 ACACGTGt 91 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 84 ACACGTGT 91 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 91 ACACGTGT 84 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 82 TCACAcGTGT 91 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 93 TCACAcGTGT 84 (Mism.= 1) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 82 TCACACGTGTGA 93 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 93 TCACACGTGTGA 82 (Mism.= 0) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 83 cACACGTGTg 92 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 92 cACACGTGTg 83 (Mism.= 2) TFBS AC: RSP02017//OS: rice (Oryza sativa) /GENE: BRD1/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00218 Up.Conf.Int. 1 Found 1 87 CGTGTG 92 (Mism.= 0) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 83 CACACGTGTG 92 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 92 cACACGTGTg 83 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00953 Up.Conf.Int. 1 Found 1 83 cACACGTG 90 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00908 Up.Conf.Int. 1 Found 1 92 cACACGTG 85 (Mism.= 1) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 83 CACACGTGtG 92 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 92 CACACGTGtG 83 (Mism.= 1) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 92 CACACGTgTg 83 (Mism.= 2) TFBS AC: RSP02179//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp18/IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 93 TCACAC 88 (Mism.= 0) TFBS AC: RSP02280//OS: rice (Oryza sativa) /GENE: OsLKR/SDH/TFBS: GSN4 box /BF: RISBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00394 Up.Conf.Int. 1 Found 1 71 TGACTCA 65 (Mism.= 0) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 84 ACACGTGT 91 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 91 ACACGTGT 84 (Mism.= 0) TFBS AC: RSP02398//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: ABRE /BF: ThABF8 Motifs on "+" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 85 CACGTGTG 92 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 83 CACACGTGTg 92 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 92 CACACGTGTg 83 (Mism.= 1) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 84 ACACGTGTga 93 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 83 cACACGTGTg 92 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 92 cACACGTGTg 83 (Mism.= 2) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00484 Up.Conf.Int. 1 Found 1 83 cACACGTGTg 92 (Mism.= 2) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 85 CACGTGTg 92 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 90 CACGTGTg 83 (Mism.= 1) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 83 CAcACGTGTg 92 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 92 CAcACGTGTg 83 (Mism.= 2) TFBS AC: RSP02909//OS: wheat (Triticum aestivum) /GENE: Synthetic oligonucleotides/TFBS: HDZ1 /BF: TaHDZipI-3; TaHDZipI-4; TaHDZipI-5 Motifs on "+" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 36 CAATCATTG 44 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 44 CAATGATTG 36 (Mism.= 0) Totally 49 motifs of 35 different TFBSs have been found ____________________________________________________________ >PLPR0425..AC:X51594.1..OS:Pisum sativum..GENE:P4..PROD:P4 protein..[ -200: +51] ..CDS: +44..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.10 T - 0.45 C - 0.10 TFBS AC: RSP00010//OS: Catharanthus roseus /GENE: Str/TFBS: G-box /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00064//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00962 Up.Conf.Int. 1 Found 1 131 AGcACGTGGt 140 (Mism.= 2) TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00246 Up.Conf.Int. 1 Found 24 90 AATAATAATAATAATAAtaA 71 (Mism.= 2) 87 AATAATAATAATAATAAtaA 68 (Mism.= 2) 84 AATAATAATAATAATAAtaA 65 (Mism.= 2) 81 AATAATAATAATAATAAtaA 62 (Mism.= 2) 78 AATAATAATAATAATAAtaA 59 (Mism.= 2) 75 AATAATAATAATAATAAtaA 56 (Mism.= 2) 72 AATAATAATAATAATAAtaA 53 (Mism.= 2) 69 AATAATAATAATAATAAtaA 50 (Mism.= 2) 66 AATAATAATAATAATAAtaA 47 (Mism.= 2) 63 AATAATAATAATAATAAtaA 44 (Mism.= 2) 60 AATAATAATAATAATAAtaA 41 (Mism.= 2) 57 AATAATAATAATAATAAtaA 38 (Mism.= 2) 54 AATAATAATAATAATAAtaA 35 (Mism.= 2) 51 AATAATAATAATAATAAtaA 32 (Mism.= 2) 48 AATAATAATAATAATAAtaA 29 (Mism.= 2) 45 AATAATAATAATAATAAtaA 26 (Mism.= 2) 42 AATAATAATAATAATAAtaA 23 (Mism.= 2) 39 AATAATAATAATAATAAtaA 20 (Mism.= 2) 36 AATAATAATAATAATAAtaA 17 (Mism.= 2) 33 AATAATAATAATAATAAtaA 14 (Mism.= 2) 30 AATAATAATAATAATAAtaA 11 (Mism.= 2) 27 AATAATAATAATAATAAtaA 8 (Mism.= 2) 24 AATAATAATAATAATAAtaA 5 (Mism.= 2) 21 AATAATAATAATAATAAtaA 2 (Mism.= 2) TFBS AC: RSP00134//OS: rice (Oryza sativa) /GENE: rifa-7-P-glucuronidase transgene/TFBS: G-box /BF: Different bZIP factors, including RITA-1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00096 Up.Conf.Int. 1 Found 1 132 gCACGTGGtC 141 (Mism.= 2) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00096 Up.Conf.Int. 1 Found 1 132 gCACGTGGtC 141 (Mism.= 2) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 133 CACGTGGt 140 (Mism.= 1) TFBS AC: RSP00302//OS: Brassica napus /GENE: napA/TFBS: G-box /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00390//OS: bean (Phaseolus vulgaris); tobacco /GENE: chs15/TFBS: G-BOX /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00585//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: TSS NN /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 126 AGAgAAGCACgTGGTc 141 (Mism.= 3) TFBS AC: RSP00640//OS: maize (Zea mays) /GENE: GRF1/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 2 132 gCACGTGG 139 (Mism.= 1) 144 TCACGTGa 151 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 151 TCACGTGa 144 (Mism.= 1) TFBS AC: RSP00641//OS: maize (Zea mays) /GENE: GRF2/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 2 132 gCACGTGG 139 (Mism.= 1) 144 TCACGTGa 151 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 151 TCACGTGa 144 (Mism.= 1) TFBS AC: RSP00657//OS: bean, Phaseolus vulgaris /GENE: beta-phaseolin/TFBS: G-box /BF: PG1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 132 gCACGTGG 139 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 139 CCACGTGc 132 (Mism.= 1) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 133 CACGTGGt 140 (Mism.= 1) TFBS AC: RSP00726//OS: tobacco (Nicotiana tabacum) /GENE: Ubi.U4/TFBS: G-box /BF: unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00752//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 4 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00009 Up.Conf.Int. 1 Found 1 143 ATCACGTGAT 152 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00009 Up.Conf.Int. 1 Found 1 152 ATCACGTGAT 143 (Mism.= 0) TFBS AC: RSP00786//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: G-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00815//OS: arabidopsis (Arabidopsis thaliana) /GENE: RAV1/TFBS: G box /BF: Pti4 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 140 acCACGTGCT 131 (Mism.= 2) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00124 Up.Conf.Int. 1 Found 1 140 aCCACGTgCT 131 (Mism.= 2) TFBS AC: RSP00866//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: G-box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 132 GCACGTgG 139 (Mism.= 1) TFBS AC: RSP00957//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: pin2/TFBS: G-box /BF: JAMUC1; JAMUC10 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 2 131 aGCACGTGgT 140 (Mism.= 2) 143 atCACGTGAT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 152 atCACGTGAT 143 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 2 131 AgCACGTGgT 140 (Mism.= 2) 143 ATCACGTGaT 152 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 2 152 ATCACGTGaT 143 (Mism.= 1) 140 AcCACGTGcT 131 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00106 Up.Conf.Int. 1 Found 1 132 gCACGTGG 139 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00106 Up.Conf.Int. 1 Found 1 139 CCACGTGc 132 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 132 gCACGTGG 139 (Mism.= 1) TFBS AC: RSP01276//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: Box III /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 132 GcACGTGG 139 (Mism.= 1) TFBS AC: RSP01471//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: G-box /BF: PsGBF Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 204 TCAAaAAACTaA 215 (Mism.= 2) TFBS AC: RSP01532//OS: pea (Pisum sativum) /GENE: PsCHS3/TFBS: G-box /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01533//OS: pea (Pisum sativum) /GENE: PsCHS4/TFBS: G-box /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01534//OS: pea (Pisum sativum) /GENE: PsCHS5/TFBS: G-box /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01699//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At2g21640/UPOX/TFBS: CARE B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00603 Up.Conf.Int. 1 Found 1 146 ACGTGAT 152 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00603 Up.Conf.Int. 1 Found 1 149 ACGTGAT 143 (Mism.= 0) TFBS AC: RSP01749//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: G-box /BF: AREB2/ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01770//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G box /BF: CIB1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01782//OS: wheat (Triticum aestivum) /GENE: VRN1/TFBS: G-box /BF: TaFDL2 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01832//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-2 (At4g10040)/TFBS: G-box: /BF: AREB2/ABF4; GBF3; GBF-like protein; bHLH080 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01857//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GAI/TFBS: G-box /BF: PIL5 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01859//OS: Arabidopsis (Arabidopsis thaliana) /GENE: RGA/RGA1/TFBS: G-box /BF: PIL5 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 132 gCACGTGGtC 141 (Mism.= 2) TFBS AC: RSP01955//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MT2B/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 140 ACCACGTGct 131 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00123 Up.Conf.Int. 1 Found 1 143 ATCACGTGAT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00175 Up.Conf.Int. 1 Found 1 152 AtCACGTGAt 143 (Mism.= 2) TFBS AC: RSP02162//OS: hot pepper (Capsicum annuum) /GENE: CaPR-1/TFBS: G-box /BF: CabZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 1) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 132 gCACGTGG 139 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 139 CCACGTGc 132 (Mism.= 1) TFBS AC: RSP02220//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE3 (FHL) /BF: Motifs on "+" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 132 GCACGTGg 139 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 139 cCACGTGC 132 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00072 Up.Conf.Int. 1 Found 1 132 GCACGTGG 139 (Mism.= 0) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 2 132 GCACGTGG 139 (Mism.= 1) 144 TCACGTGA 151 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 151 tCACGTGA 144 (Mism.= 1) TFBS AC: RSP02324//OS: Arabidopsis (Arabidopsis thaliana) /GENE: JAZ2/TFBS: G-box /BF: MYC2; MYC3; MYC4 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02401//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: G-box /BF: AREB2/ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02426//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA19/TFBS: G-box /BF: PIF4 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02427//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA29/TFBS: G-box /BF: PIF4 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 140 aCCACGTGcT 131 (Mism.= 2) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 139 CCACGT 134 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 139 CCACGT 134 (Mism.= 0) TFBS AC: RSP02443//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: G-box /BF: CBF1; CBF2 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02453//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: GBF1/GBF2 BS /BF: GBF1; GBF2 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 139 cCACGTGcTT 130 (Mism.= 2) TFBS AC: RSP02469//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PIL1/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02470//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PHYB/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02471//OS: Arabidopsis (Arabidopsis thaliana) /GENE: RGA1/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02475//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ATHB-2/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02478//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HAT3/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02480//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WAG2/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02482//OS: Arabidopsis (Arabidopsis thaliana) /GENE: RCI2B/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02484//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AT1G19310/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02486//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AT4G03010/TFBS: G-box /BF: PIF3 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02564//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAT1/TFBS: G-box /BF: JAM1; MYC2 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02612//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At5g64940/TFBS: G-box /BF: bHLH122 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02614//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERF6 (At4g17490)/TFBS: G-box /BF: bHLH122 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 145 CACGTGAt 152 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 150 CACGTGAt 143 (Mism.= 1) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 2 133 CACGTGGT 140 (Mism.= 0) 145 CACGTGaT 152 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 2 150 CACGTGaT 143 (Mism.= 1) 138 CACGTGcT 131 (Mism.= 1) TFBS AC: RSP02647//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ORA59/TFBS: G-box /BF: MYC2 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02680//OS: banana (Musa acuminata subgroup Cavendish) /GENE: MaNAC1/TFBS: MYC RE1 /BF: MaICE1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 134 ACGTGG 139 (Mism.= 0) TFBS AC: RSP02805//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 137 ACGTGC 132 (Mism.= 0) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00468 Up.Conf.Int. 1 Found 1 143 aTCACGTGaT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 2 152 aTCACGTGaT 143 (Mism.= 2) 140 acCACGTGCT 131 (Mism.= 2) TFBS AC: RSP02830//OS: poplar (Poplus trichocarpa) /GENE: PtANR1/TFBS: MdMYB9 BS (PtANR1) /BF: MdMYB9 Motifs on "-" Strand: Mean Exp. Number 0.00710 Up.Conf.Int. 1 Found 2 152 aTCACGTGaT 143 (Mism.= 2) 140 acCACGTGCT 131 (Mism.= 2) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 132 GCACGTGGtc 141 (Mism.= 2) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 132 GCACGTGGtc 141 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 131 AGCACGTGGT 140 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 2 131 aGCACGTGgT 140 (Mism.= 2) 143 atCACGTGAT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 152 atCACGTGAT 143 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 2 131 agCACGTGGT 140 (Mism.= 2) 143 aTCACGTGaT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 152 aTCACGTGaT 143 (Mism.= 2) TFBS AC: RSP02935//OS: Japanese yew (Taxus cuspidate) /GENE: TSalphaH/TFBS: E-box/1 /BF: TcJAMYC1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02939//OS: Japanese yew (Taxus cuspidate) /GENE: PAM/TFBS: E-box/1 /BF: TcJAMYC1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02942//OS: Japanese yew (Taxus cuspidate) /GENE: DBTNBT/TFBS: E-box/1 /BF: TcJAMYC1 Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 133 CACGTG 138 (Mism.= 0) 145 CACGTG 150 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 2 150 CACGTG 145 (Mism.= 0) 138 CACGTG 133 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 166 CTATAAATAG 175 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 0) Totally 274 motifs of 90 different TFBSs have been found ____________________________________________________________ >PLPR0426..AC:X51595.1..OS:Pisum sativum..GENE:S2..PROD:S2 protein..[ -200: +51] ..CDS: +50..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.32 C - 0.17 TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 91 AATAATAATAATAgTgtAcA 72 (Mism.= 4) TFBS AC: RSP00585//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: TSS NN /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 126 AGAgAAGCACgTGGTc 141 (Mism.= 3) TFBS AC: RSP00699//OS: Brassica oleracea /GENE: SLG13/TFBS: Box IV /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 17 aGAgAAAGTCATCtA 31 (Mism.= 3) TFBS AC: RSP00752//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 4 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 143 ATCACGTGAT 152 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 152 ATCACGTGAT 143 (Mism.= 0) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 1 140 aCCACGTgCT 131 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 2 131 aGCACGTGgT 140 (Mism.= 2) 143 atCACGTGAT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 152 atCACGTGAT 143 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 2 131 AgCACGTGgT 140 (Mism.= 2) 143 ATCACGTGaT 152 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 2 152 ATCACGTGaT 143 (Mism.= 1) 140 AcCACGTGcT 131 (Mism.= 2) TFBS AC: RSP01100//OS: Medicago truncatula /GENE: MtLec5/TFBS: RE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 218 TTTTAGTTCtTTTgATgAaT 199 (Mism.= 4) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 132 gCACGTGG 139 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 139 CCACGTGc 132 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01621//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E4 /BF: GmDof4; GmDof22 Motifs on "+" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 222 TACACTTTaG 231 (Mism.= 1) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 132 gCACGTGGtC 141 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 140 ACCACGTGct 131 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00651 Up.Conf.Int. 1 Found 1 143 AtCACGTGAt 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00525 Up.Conf.Int. 1 Found 1 152 AtCACGTGAt 143 (Mism.= 2) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 132 gCACGTGG 139 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 139 CCACGTGc 132 (Mism.= 1) TFBS AC: RSP02220//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE3 (FHL) /BF: Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 132 GCACGTGg 139 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 139 cCACGTGC 132 (Mism.= 1) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 132 GCACGTGG 139 (Mism.= 0) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 2 132 GCACGTGg 139 (Mism.= 1) 144 tCACGTGA 151 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 151 tCACGTGA 144 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 140 aCCACGTGcT 131 (Mism.= 2) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 133 CACGTGGT 140 (Mism.= 0) TFBS AC: RSP02875//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS2 /BF: GbWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 20 GaAAGTCATcTA 31 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 131 AgCACGTGGt 140 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 2 131 aGCACGTGgT 140 (Mism.= 2) 143 atCACGTGAT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 152 atCACGTGAT 143 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 2 131 agCACGTGGT 140 (Mism.= 2) 143 aTCACGTGaT 152 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 152 aTCACGTGaT 143 (Mism.= 2) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 0) Totally 41 motifs of 25 different TFBSs have been found ____________________________________________________________ >PLPR0427..AC:X61293.1..OS:Phaseolus vulgaris..GENE:gln-delta..PROD:plastid-located glutamine synthetase..[ -200: +51] ..CDS:+1619..TSS:201 (+1) # Alternative TSS(s): +13 |Taxon: Dicot |Promoter: TAT Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.17 T - 0.27 C - 0.25 TFBS AC: RSP00078//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 158 CCACCAACCCCt 169 (Mism.= 1) TFBS AC: RSP00433//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB84 BS /BF: AtMYB84 Motifs on "-" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 169 aGGGGTtGGTGG 158 (Mism.= 2) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "+" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 79 TCTTAAAGGGa 89 (Mism.= 1) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 18 TTCTTTCA 11 (Mism.= 0) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 159 CACCAACC 166 (Mism.= 0) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 159 CACCAACC 166 (Mism.= 0) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 159 CACCAACC 166 (Mism.= 0) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 159 CACCAACC 166 (Mism.= 0) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 159 CACCAACC 166 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0428..AC:X61293.1..OS:Phaseolus vulgaris..GENE:gln-delta..PROD:plastid-located glutamine synthetase..[ -200: +51] ..CDS:+1708..TSS:201 (+1) # Alternative TSS(s): +16 |Taxon: Dicot |Promoter: TAT Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.18 T - 0.28 C - 0.18 TFBS AC: RSP00158//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 1 84 TATTTGCaTAA 94 (Mism.= 1) Totally 1 motifs of 1 different TFBSs have been found ____________________________________________________________ >PLPR0429..AC:X65875.1..OS:Hordeum vulgare..GENE:Itr1..PROD:BTI-CMe..[ -200: +51] ..CDS: +26..TSS:201 (+1) # Alternative TSS(s): +2 +4 +5 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.26 C - 0.28 TFBS AC: RSP00355//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00782 Up.Conf.Int. 1 Found 1 103 TAACAGAA 110 (Mism.= 0) TFBS AC: RSP00366//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: ERE /BF: TDBA12 Motifs on "-" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 115 TGACTTTCTGtt 104 (Mism.= 2) TFBS AC: RSP00580//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: LRE-TATA AA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 155 TTcaCATTTCAcTATA 170 (Mism.= 3) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 2 164 CaCTATATAT 173 (Mism.= 1) 166 CTaTATATAT 175 (Mism.= 1) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 77 TTTCCATGcAGc 88 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 77 TTTCCATGcAGc 88 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 77 TTTCCATGcAGc 88 (Mism.= 2) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 183 TCACATGTaT 174 (Mism.= 1) TFBS AC: RSP01631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZCP4/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 238 CTTGAACGCCA 228 (Mism.= 2) TFBS AC: RSP01633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At1g08610/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 238 CTTGAACGCCA 228 (Mism.= 2) TFBS AC: RSP01635//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 238 CTTGAACGCCA 228 (Mism.= 2) TFBS AC: RSP01766//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: RY /BF: FUSCA3 Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 78 TTCCATGCAGCGGC 91 (Mism.= 0) TFBS AC: RSP01792//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Pl-PKb1/TFBS: AW-box 2 /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00017 Up.Conf.Int. 1 Found 1 139 CaTCGTAAGTaCCG 126 (Mism.= 2) TFBS AC: RSP02129//OS: rice (Oryza sativa) /GENE: OsAns/TFBS: OsC1-MYB BS /BF: OsC1 Motifs on "+" Strand: Mean Exp. Number 0.00604 Up.Conf.Int. 1 Found 1 58 AgCTACCCTTT 68 (Mism.= 1) TFBS AC: RSP02304//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS1 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00639 Up.Conf.Int. 1 Found 1 119 TTTCTGACTtTc 108 (Mism.= 2) TFBS AC: RSP02963//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box E /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 139 GCCAgCTGCT 148 (Mism.= 1) Totally 17 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0430..AC:Z12028.1..OS:Lycopersicon pimpinellifolium..GENE:vacuolar invertase..PROD:beta-fructofuranosidase..[ -200: +51] ..CDS: +18..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.34 C - 0.20 TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 72 TTGGTCAtTTt 82 (Mism.= 2) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 236 ATAaCACTGaGT 225 (Mism.= 2) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00991 Up.Conf.Int. 1 Found 1 50 AATtTTTTTATT 39 (Mism.= 1) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 24 tAAATGAAGA 33 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00961 Up.Conf.Int. 1 Found 1 178 CTaTATATAT 169 (Mism.= 1) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 8 TTTCaATGaAGT 19 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 8 TTTCaATGaAGT 19 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 8 TTTCaATGaAGT 19 (Mism.= 2) TFBS AC: RSP01333//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Box II, wild) /BF: BGTF Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 59 TGTtTGGTTAATtTt 45 (Mism.= 3) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 82 aAAaTGACCAA 72 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 82 aAAaTGACCAA 72 (Mism.= 2) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 23 TTTCACTT 16 (Mism.= 0) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00393 Up.Conf.Int. 1 Found 1 221 GGCCACT 227 (Mism.= 0) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 82 AaAATGACCAAA 71 (Mism.= 1) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00334 Up.Conf.Int. 1 Found 1 49 ATTTTTTTAT 40 (Mism.= 0) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 154 GAAaATGACTGg 143 (Mism.= 2) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0431..AC:Z12027.1..OS:Lycopersicon esculentum..GENE:vacuolar invertase..PROD:beta-fructofuranosidase..[ -200: +51] ..CDS: +18..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.13 T - 0.34 C - 0.21 TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 72 TTGGTCAtTTt 82 (Mism.= 2) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00807 Up.Conf.Int. 1 Found 1 236 ATAaCACTGaGT 225 (Mism.= 2) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 50 AATtTTTTTATT 39 (Mism.= 1) TFBS AC: RSP01014//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 2 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 24 tAAATGAAGA 33 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00927 Up.Conf.Int. 1 Found 1 178 CTaTATATAT 169 (Mism.= 1) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 8 TTTCaATGaAGT 19 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 8 TTTCaATGaAGT 19 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00876 Up.Conf.Int. 1 Found 1 8 TTTCaATGaAGT 19 (Mism.= 2) TFBS AC: RSP01333//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Box II, wild) /BF: BGTF Motifs on "-" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 59 TGTtTGGTTAATtTt 45 (Mism.= 3) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 82 aAAaTGACCAA 72 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 82 aAAaTGACCAA 72 (Mism.= 2) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 23 TTTCACTT 16 (Mism.= 0) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 221 GGCCACT 227 (Mism.= 0) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 82 AaAATGACCAAA 71 (Mism.= 1) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 49 ATTTTTTTAT 40 (Mism.= 0) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 154 GAAaATGACTGg 143 (Mism.= 2) Totally 16 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0432..AC:X78337.1..OS:Zea mays (W64-A)..GENE:PRms..PROD:pathogenesis-related protein..[ -200: +51] ..CDS: +83..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.25 C - 0.27 TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00727 Up.Conf.Int. 1 Found 1 2 TAAATGCA 9 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 168 CTATAAATA 176 (Mism.= 0) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 168 CTATAAATAG 177 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 177 CTATTTATAG 168 (Mism.= 0) TFBS AC: RSP01716//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 88 TTcTACGTAtGA 77 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 177 CTATTTATAG 168 (Mism.= 1) TFBS AC: RSP02331//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 5 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 237 ACCTAAT 231 (Mism.= 0) TFBS AC: RSP02520//OS: rice (Oryza sativa, japonica) /GENE: OsChia4a/TFBS: E2-box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 152 aTTCACATGCTc 163 (Mism.= 2) TFBS AC: RSP02830//OS: poplar (Poplus trichocarpa) /GENE: PtANR1/TFBS: MdMYB9 BS (PtANR1) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 153 TTCACaTGCT 162 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 168 CTATAAATAG 177 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 177 CTATTTATAG 168 (Mism.= 0) Totally 11 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0433..AC:X54192.1..OS:Oryza sativa..GENE:GluB-2..PROD:glutelin..[ -200: +51] ..CDS: +44..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.15 T - 0.35 C - 0.19 TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 151 CCAaGTGGCC 160 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 151 CCAaGTGGCC 160 (Mism.= 1) TFBS AC: RSP00357//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 197 CAACTCAC 204 (Mism.= 0) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00529 Up.Conf.Int. 1 Found 1 158 CCACTTG 152 (Mism.= 0) TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 106 CTTGTaGTgTTAA 94 (Mism.= 2) TFBS AC: RSP00664//OS: pea, Pisum sativum /GENE: psl/TFBS: C-box /BF: Opaque-2 (O2); TGA1 Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 27 ATGAGTCAT 35 (Mism.= 0) TFBS AC: RSP00687//OS: barley (Hordeum vulgare) /GENE: C-hordein/TFBS: N-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 27 ATGAGTCAT 35 (Mism.= 0) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 128 AACAAACACTATT 140 (Mism.= 2) TFBS AC: RSP00871//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: GLM1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 37 GcTGAGTCAT 46 (Mism.= 1) TFBS AC: RSP01045//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box E /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 194 aGACCgATCAAG 183 (Mism.= 2) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 128 AACAAACACTATT 140 (Mism.= 2) TFBS AC: RSP01278//OS: Tobacco; Nicotiana tabacum /GENE: Synthetic oligonucleotides/TFBS: B consensus /BF: AP1/GCN4 Motifs on "+" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 27 ATGAGTCAT 35 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 35 ATGACTCAT 27 (Mism.= 0) TFBS AC: RSP01481//OS: rice (Oryza sativa) /GENE: GluB-1/TFBS: OSMYB5 BS (P) /BF: OSMYB5 Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 123 CtTGCAACAAACacTA 138 (Mism.= 3) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00334 Up.Conf.Int. 1 Found 1 160 GGCCACT 154 (Mism.= 0) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00529 Up.Conf.Int. 1 Found 1 158 CCACTTG 152 (Mism.= 0) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 78 AAAGGCAA 71 (Mism.= 0) TFBS AC: RSP02712//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 4 /BF: DOF2 Motifs on "+" Strand: Mean Exp. Number 0.00188 Up.Conf.Int. 1 Found 1 11 TCCAAAAGCaT 21 (Mism.= 1) TFBS AC: RSP02721//OS: rice (Oryza sativa) /GENE: AK065090/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00931 Up.Conf.Int. 1 Found 1 128 TgCAAGTATaG 118 (Mism.= 2) Totally 19 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0434..AC:X53600.1..OS:Nicotiana tabacum..GENE:gln2..PROD:glucan endo-beta-1,3-glucosidase..[ -200: +51] ..CDS: +20..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.32 C - 0.24 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP00233//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS5 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "+" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 224 TCTACcTCAC 233 (Mism.= 1) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 96 GGCGGC 101 (Mism.= 0) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 67 GTTGACATGT 76 (Mism.= 2) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 67 GTTGACATGT 76 (Mism.= 2) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 67 GTTGACATGT 76 (Mism.= 2) TFBS AC: RSP00998//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 5'-III element /BF: 3AF5 Motifs on "-" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 70 cAACTTgATCATTT 57 (Mism.= 2) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 92 GGTGACcTGGC 82 (Mism.= 1) TFBS AC: RSP01320//OS: tobacco (Nicotiana tabacum) /GENE: PRB-1b/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP01321//OS: tobacco (Nicotiana tabacum) /GENE: CHN17/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP01322//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP01323//OS: tobacco (Nicotiana tabacum) /GENE: GLN2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP01324//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn1/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP01325//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP01341//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AtEBP Motifs on "-" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00357 Up.Conf.Int. 1 Found 1 29 TCAtCAAACTCA 40 (Mism.= 1) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP02118//OS: fungus Trichoderma harzianum /GENE: ech-42/TFBS: Cre1 BS1 /BF: Cre1 Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 91 CCgGGGGC 98 (Mism.= 1) TFBS AC: RSP02177//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp13/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 24 TTaCATCATCaAA 36 (Mism.= 2) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 102 AGCCGCC 96 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "-" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 103 GAGCCGCCcC 94 (Mism.= 1) TFBS AC: RSP02650//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EBE /BF: ERF (At1g04370, At2g31230); DREB (At3g11020, At4g13620) Motifs on "-" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 106 TAAGAGCCGCC 96 (Mism.= 0) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 101 GCCGCC 96 (Mism.= 0) TFBS AC: RSP02778//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: VOZ2C BS /BF: VOZ2C Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 101 gCCGCCC 95 (Mism.= 1) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 82 GCCAgGTCAcC 92 (Mism.= 2) TFBS AC: RSP02930//OS: maize (Zea mays) /GENE: GRMZM2G138689/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00944 Up.Conf.Int. 1 Found 1 69 TGACATGTtA 78 (Mism.= 1) TFBS AC: RSP02955//OS: maize (Zea mays) /GENE: FIP1/TFBS: WRI1 BS /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00006 Up.Conf.Int. 1 Found 1 102 aGCCGCCCC 94 (Mism.= 1) Totally 44 motifs of 44 different TFBSs have been found ____________________________________________________________ >PLPR0435..AC:X66942.1..OS:Nicotiana tabacum..GENE:prb-1b..PROD:pathogenesis-related basic protein 1b..[ -200: +51] ..CDS: +13..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.11 T - 0.37 C - 0.22 TFBS AC: RSP00017//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF3-BE /BF: SEF3, soybean Embryo Factor 3 Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 173 AACCCA 178 --27-- 206 AACCCA 211 (Mism.= 0/ 0) TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP00397//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 10 AaTGGCGG 17 (Mism.= 1) TFBS AC: RSP00438//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: PR-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 13 GGCGGC 18 (Mism.= 0) TFBS AC: RSP00807//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP00809//OS: arabidopsis (Arabidopsis thaliana) /GENE: peroxidase ATP1a/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP00811//OS: arabidopsis (Arabidopsis thaliana) /GENE: BTF3/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP00814//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-4/TFBS: GCC box /BF: Pti4 Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP00921//OS: Pseudomonas syringae pv. tomato. /GENE: avrPto/TFBS: MBSII /BF: Pti4/5/6 Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP00925//OS: tobacco (Nicotiana tabacum) /GENE: Nt-chitinase/TFBS: GCC-box/ERE /BF: LeERF1, LeERF2, LeERF3, LeERF4 Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 22 AAGAGCCGCCAtTA 9 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 25 ctCACGTGAT 34 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 1 25 cTCACGTGaT 34 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00610 Up.Conf.Int. 1 Found 1 34 ATCACGTGag 25 (Mism.= 2) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "-" Strand: Mean Exp. Number 0.00051 Up.Conf.Int. 1 Found 1 19 AGCCGCCAT 11 (Mism.= 0) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 197 TCTCACCAAaaC 208 (Mism.= 2) TFBS AC: RSP01136//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: TGTCACA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 40 TGTCACA 34 (Mism.= 0) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 2 218 CCCATTTTGG 209 (Mism.= 2) 217 CCATTTTGGG 208 (Mism.= 2) TFBS AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00859 Up.Conf.Int. 1 Found 1 217 CCATTTTGGG 208 (Mism.= 1) TFBS AC: RSP01320//OS: tobacco (Nicotiana tabacum) /GENE: PRB-1b/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP01321//OS: tobacco (Nicotiana tabacum) /GENE: CHN17/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP01322//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP01323//OS: tobacco (Nicotiana tabacum) /GENE: GLN2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP01324//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn1/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP01325//OS: tobacco (Nicotiana plumbaginifolia) /GENE: gn2/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP01328//OS: tobacco (Nicotiana tabacum) /GENE: ERF3/TFBS: GCCGCC-ERE /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP01341//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AtEBP Motifs on "-" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP01699//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At2g21640/UPOX/TFBS: CARE B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 28 ACGTGAT 34 (Mism.= 0) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00898 Up.Conf.Int. 1 Found 1 48 TctTTGACTTTA 59 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 34 AtCACGTGAg 25 (Mism.= 2) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 209 CCAAAATGGG 218 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 217 CCATTTTGGG 208 (Mism.= 1) TFBS AC: RSP02231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-consensus /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 19 AGCCGCCA 12 (Mism.= 0) TFBS AC: RSP02297//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: AtERF11 Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 26 tCACGTGA 33 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 33 TCACGTGA 26 (Mism.= 1) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "-" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 19 AGCCGCC 13 (Mism.= 0) TFBS AC: RSP02568//OS: soybean (Glycine max); transgenic tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: GCC-box /BF: GmERF7 Motifs on "-" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 20 GAGCCGCCAt 11 (Mism.= 1) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00965 Up.Conf.Int. 1 Found 1 27 CACGTGaT 34 (Mism.= 1) TFBS AC: RSP02646//OS: Artemisia annua /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AaERF1 Motifs on "-" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 25 gATAAGAGCCGCCAtT 10 (Mism.= 2) TFBS AC: RSP02650//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EBE /BF: ERF (At1g04370, At2g31230); DREB (At3g11020, At4g13620) Motifs on "-" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 23 TAAGAGCCGCC 13 (Mism.= 0) TFBS AC: RSP02667//OS: wheat (Triticum durum) /GENE: Synthetic oligonucleotides/TFBS: GCC-box /BF: TaERF5a; TaERF6 Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 18 GCCGCC 13 (Mism.= 0) TFBS AC: RSP02827//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: AtERF71/HRE2 Motifs on "-" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 25 gATAAGAGCCGCCAtT 10 (Mism.= 2) TFBS AC: RSP02829//OS: apple (Malus x domestica) /GENE: MdANR/TFBS: MdMYB9 BS (MdANR) /BF: MdMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 25 CTCACGTGaT 34 (Mism.= 1) TFBS AC: RSP02874//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS1 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 59 TAAaGTCAAAGA 48 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 25 ctCACGTGAT 34 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00478 Up.Conf.Int. 1 Found 1 25 CTCACGTGaT 34 (Mism.= 1) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 25 CTCACGTGat 34 (Mism.= 2) Totally 59 motifs of 56 different TFBSs have been found ____________________________________________________________ >PLPR0436..AC:X81354.1..OS:Arabidopsis thaliana..GENE:ATK1..PROD:homeobox protein knotted-1-like 2..[ -200: +51] ..CDS: +341..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.34 C - 0.15 TFBS AC: RSP00272//OS: tobacco (Nicotiana tabacum) /GENE: artifical construction/TFBS: Type II element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 121 TCACtCGaATC 131 (Mism.= 2) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 59 GTAACCATG 67 (Mism.= 0) TFBS AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic oligonucleotides/TFBS: ZPT2-2 BS 2 /BF: ZPT2-2 Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 76 CAGT 79 -- 9-- 89 TGCT 92 (Mism.= 0/ 0) TFBS AC: RSP01682//OS: pea (Pisum sativum) /GENE: FBPase/TFBS: PF1 BS /BF: PF1 Motifs on "-" Strand: Mean Exp. Number 0.00241 Up.Conf.Int. 1 Found 1 238 ATaATTTAcAAGTTTT 223 (Mism.= 2) TFBS AC: RSP02387//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: Oct(II) /BF: NtWLIM2 Motifs on "+" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 120 ATCACtCGaATC 131 (Mism.= 2) TFBS AC: RSP02846//OS: tomato (Solanum lycopersicum) /GENE: DWF5/TFBS: P box 1 /BF: JRE-4 Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 16 tAGCACGCtA 7 (Mism.= 2) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "-" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 193 TTTGTCGTAcT 183 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0437..AC:X81354.1..OS:Arabidopsis thaliana..GENE:ATK1..PROD:homeobox protein knotted-1-like 2..[ -200: +51] ..CDS: +239..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.10 T - 0.43 C - 0.15 TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 183 CTTtTCGTCA 192 (Mism.= 1) TFBS AC: RSP00272//OS: tobacco (Nicotiana tabacum) /GENE: artifical construction/TFBS: Type II element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 18 TCACtCGaATC 28 (Mism.= 2) TFBS AC: RSP01682//OS: pea (Pisum sativum) /GENE: FBPase/TFBS: PF1 BS /BF: PF1 Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 135 ATaATTTAcAAGTTTT 120 (Mism.= 2) TFBS AC: RSP02387//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: Oct(II) /BF: NtWLIM2 Motifs on "+" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 17 ATCACtCGaATC 28 (Mism.= 2) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "-" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 90 TTTGTCGTAcT 80 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0438..AC:X14058.1..OS:Nicotiana tabacum..GENE:nia-1..PROD:nitrate reductase (EC 1.6.6.1)..[ -200: +51] ..CDS: +89..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.22 T - 0.31 C - 0.16 TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00647 Up.Conf.Int. 1 Found 1 47 TTTtATTTTGTGATgT 62 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 5 220 AGAGAGAGA 228 (Mism.= 0) 222 AGAGAGAGA 230 (Mism.= 0) 224 AGAGAGAGA 232 (Mism.= 0) 226 AGAGAGAGA 234 (Mism.= 0) 228 AGAGAGAGA 236 (Mism.= 0) TFBS AC: RSP00889//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: GC motif /BF: bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 183 CCACGCA 189 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 4 219 tAGAGAGAGAGAGAGAg 235 (Mism.= 2) 221 GAGAGAGAGAGAGAGAA 237 (Mism.= 0) 223 GAGAGAGAGAGAGAaAt 239 (Mism.= 2) 225 GAGAGAGAGAGAaAtAt 241 (Mism.= 3) TFBS AC: RSP01621//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E4 /BF: GmDof4; GmDof22 Motifs on "-" Strand: Mean Exp. Number 0.00947 Up.Conf.Int. 1 Found 1 32 TACACTTTTt 23 (Mism.= 1) TFBS AC: RSP02289//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: ATCT-motif /BF: 63-kDa TF; 52-kDa (b3-domain) TF Motifs on "+" Strand: Mean Exp. Number 0.00946 Up.Conf.Int. 1 Found 1 209 AATCAAATCTt 219 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 5 241 aTaTtTCTCTCTCTCT 226 (Mism.= 3) 239 aTtTCTCTCTCTCTCT 224 (Mism.= 2) 237 tTCTCTCTCTCTCTCT 222 (Mism.= 1) 235 CTCTCTCTCTCTCTCT 220 (Mism.= 0) 233 CTCTCTCTCTCTCTaa 218 (Mism.= 2) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 117 GTGGGACC 110 (Mism.= 1) Totally 19 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0439..AC:X14059.1..OS:Nicotiana tabacum..GENE:nia-2..PROD:nitrate reductase (EC 1.6.6.1)..[ -200: +51] ..CDS: +138..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.21 T - 0.29 C - 0.18 TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 4 235 AGAGAGAGA 243 (Mism.= 0) 237 AGAGAGAGA 245 (Mism.= 0) 239 AGAGAGAGA 247 (Mism.= 0) 241 AGAGAGAGA 249 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 233 GGAGAGAGA 241 (Mism.= 0) TFBS AC: RSP00889//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: GC motif /BF: bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00509 Up.Conf.Int. 1 Found 1 183 CCACGCA 189 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 2 232 cgGAGAGAGAGAGAGAg 248 (Mism.= 3) 234 GAGAGAGAGAGAGAGAA 250 (Mism.= 0) TFBS AC: RSP01937//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: Box-III* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00990 Up.Conf.Int. 1 Found 1 34 gaTTTACACT 25 (Mism.= 2) TFBS AC: RSP02100//OS: maize (Zea mays) /GENE: A1/TFBS: P (-128) element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 129 TATGGCGCTA 138 (Mism.= 2) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00695 Up.Conf.Int. 1 Found 1 222 TTTCTTGTTCT 212 (Mism.= 1) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 222 TTTCTTGTTCT 212 (Mism.= 0) TFBS AC: RSP02204//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: MYCS (SmPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00583 Up.Conf.Int. 1 Found 1 222 TTTCTTGTTCT 212 (Mism.= 1) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 222 TTTCTTGTTCT 212 (Mism.= 1) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 222 TTTCTTGTTCT 212 (Mism.= 0) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00626 Up.Conf.Int. 1 Found 1 222 TTTCTTGTTCT 212 (Mism.= 1) TFBS AC: RSP02289//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPol-lyambda/TFBS: ATCT-motif /BF: 63-kDa TF; 52-kDa (b3-domain) TF Motifs on "+" Strand: Mean Exp. Number 0.00244 Up.Conf.Int. 1 Found 1 222 AATCAAATCTC 232 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 3 250 tTCTCTCTCTCTCTCT 235 (Mism.= 1) 248 CTCTCTCTCTCTCTCc 233 (Mism.= 1) 246 CTCTCTCTCTCTCcga 231 (Mism.= 3) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00072 Up.Conf.Int. 1 Found 1 233 GGAGAGAGAG 242 (Mism.= 0) Totally 21 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0440..AC:X15425.1..OS:Cucumis sativus..GENE:malate synthase (EC 4.1.3.2)..PROD:malate synthase..[ -200: +51] ..CDS: +39..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.30 C - 0.25 TFBS AC: RSP00377//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS5 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 54 AcCCAATCCa 45 (Mism.= 2) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00591 Up.Conf.Int. 1 Found 1 75 GATGACGcGA 66 (Mism.= 1) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 94 CAAATGGAaA 85 (Mism.= 1) TFBS AC: RSP01346//OS: cucumber, Cucumis sativus /GENE: ms/TFBS: IMH5 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 2 CGCTATTGCAGTTC 15 (Mism.= 0) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 212 TTCAcTTGAG 221 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 44 CCATTTATTG 35 (Mism.= 1) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 25 CCAACATTGG 16 (Mism.= 1) TFBS AC: RSP02323//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DGAT1/TFBS: CE1-like (2) /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 197 aCCCACCGATT 207 (Mism.= 1) TFBS AC: RSP02419//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 92-94 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 247 GATCCCAT 240 (Mism.= 0) TFBS AC: RSP02758//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS1 (CCR1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 179 CACCTAAC 186 (Mism.= 0) TFBS AC: RSP02894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB BS /BF: R2R3-MYB TFs Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 179 CACCTAAC 186 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 35 CAATAAATGG 44 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0441..AC:X87109.1..OS:Oryza sativa (indica cultivar-group)..GENE:RC24..PROD:chitinase..[ -200: +51] ..CDS: +57..TSS:201 (+1) # Alternative TSS(s): +3 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.27 C - 0.26 TFBS AC: RSP00320//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: Box I /BF: RNFG1 Motifs on "+" Strand: Mean Exp. Number 0.00223 Up.Conf.Int. 1 Found 1 19 GATCATCtATC 29 (Mism.= 1) TFBS AC: RSP00356//OS: tobacco (Nicotiana tabacum) /GENE: EAS4/TFBS: TAC box /BF: TacBBF (TAC box binding factor) Motifs on "-" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 112 ACTCTtCAaTACTC 99 (Mism.= 2) TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 249 tGCAAAGCAA 240 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 58 TTGGTCAAaTa 48 (Mism.= 2) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 25 GATGATCTGA 16 (Mism.= 1) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 76 TCATGgATGT 67 (Mism.= 1) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 48 tAtTTGACCAA 58 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00819 Up.Conf.Int. 1 Found 1 48 tAtTTGACCAA 58 (Mism.= 2) TFBS AC: RSP01740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SIRK/FRK1 (At2g19190)/TFBS: AtSIRKp (WRKY11) BS2 /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 48 TAtTTGACCAAcA 60 (Mism.= 2) TFBS AC: RSP02323//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DGAT1/TFBS: CE1-like (2) /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00148 Up.Conf.Int. 1 Found 1 186 TCCCACCGcTT 196 (Mism.= 1) TFBS AC: RSP02566//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLD/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 121 ATCGTGGcAA 130 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0442..AC:L33677.1..OS:Arabidopsis thaliana..GENE:PALs..PROD:phenylalanine ammonia-lyase..[ -200: +51] ..CDS: +127..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.04 T - 0.32 C - 0.29 TFBS AC: RSP00003//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CArG1 (AGL3) /BF: AGL3; MADS-box containing positively transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 108 CCATATAAAG 99 (Mism.= 0) TFBS AC: RSP00241//OS: maize (Zea mays) /GENE: Bronze2/TFBS: C1-motif (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 38 CGGTCA 43 (Mism.= 0) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 113 AAAAAAGAaA 122 (Mism.= 1) TFBS AC: RSP00489//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 142 TACCTACCAA 151 (Mism.= 0) TFBS AC: RSP00618//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: 16 KK /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 40 CCGTTA 35 (Mism.= 0) TFBS AC: RSP00835//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: CCGTTA motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 40 CCGTTA 35 (Mism.= 0) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 99 CTTTATATGG 108 (Mism.= 2) TFBS AC: RSP01710//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Intermediate” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00374 Up.Conf.Int. 1 Found 1 108 CCATATAAAG 99 (Mism.= 0) TFBS AC: RSP01929//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7A element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 36 AACGGT 41 (Mism.= 0) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 114 AAAAAGAAA 122 (Mism.= 0) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 113 TTCTTCCA 106 (Mism.= 1) TFBS AC: RSP02707//OS: rice blast fungus (Magnaporthe oryzae) /GENE: COS1-dependent genes/TFBS: A4GA3-motif /BF: COS1 Motifs on "+" Strand: Mean Exp. Number 0.00643 Up.Conf.Int. 1 Found 1 115 AAAAGAAA 122 (Mism.= 0) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0443..AC:L33678.1..OS:Arabidopsis thaliana (strain Columbia)..GENE:PAL2..PROD:phenylalanine ammonia-lyase..[ -200: +51] ..CDS: +106..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.05 T - 0.35 C - 0.34 TFBS AC: RSP00241//OS: maize (Zea mays) /GENE: Bronze2/TFBS: C1-motif (2) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 42 CGGTCA 47 (Mism.= 0) TFBS AC: RSP00263//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Non /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 35 CATCCAACG 43 (Mism.= 0) TFBS AC: RSP01043//OS: potato (Solanum tuberosum) /GENE: St4cl-1/TFBS: FP2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 57 TCTCACCcACCCC 69 (Mism.= 1) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00627 Up.Conf.Int. 1 Found 1 57 TCTCACCcACCC 68 (Mism.= 1) TFBS AC: RSP01231//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: A-box (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 44 CCGTTG 39 (Mism.= 0) TFBS AC: RSP01563//OS: wheat (Triticum aestivum) /GENE: H3 (TH012)/TFBS: HBP-2 BS /BF: WZF-1 Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 35 CATCCAACG 43 (Mism.= 0) TFBS AC: RSP01929//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7A element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 40 AACGGT 45 (Mism.= 0) TFBS AC: RSP02082//OS: oomycete, Phytophthora infestans /GENE: Pks1/TFBS: CGTTG motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 44 CCGTTG 39 (Mism.= 0) TFBS AC: RSP02379//OS: wheat (Triticum aestivum) /GENE: GST22/TFBS: TiMYB2R-1 BS /BF: TiMYB2R-1 Motifs on "-" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 44 CCGTTG 39 (Mism.= 0) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 91 CGaAAAAATC 100 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0444..AC:D26058.1..OS:Catharanthus roseus..GENE:cyc07..PROD:specifically expressed at the S phase during the cell cycle in the synchronous culture..[ -200: +51] ..CDS: +96..TSS:201 (+1) |Taxon: Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.29 C - 0.24 TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 199 TTTAGGG 205 (Mism.= 0) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 200 TTAGGGTTT 208 (Mism.= 0) TFBS AC: RSP00333//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: S2 /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 95 CCATACATT 87 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 208 AAACCCTAA 200 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 200 TTAGGGTTT 208 (Mism.= 0) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 202 TAAATGCA 195 (Mism.= 0) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 1 209 aAAACCCTAA 200 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 209 aaAACCCTAA 200 (Mism.= 2) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 58 tTGGGCCCTCa 68 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 2 208 AAACCCTA 201 (Mism.= 0) 190 AAACCCTA 183 (Mism.= 0) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00347 Up.Conf.Int. 1 Found 1 221 GCCGTTG 227 (Mism.= 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 2 183 TAGGGTTT 190 (Mism.= 0) 201 TAGGGTTT 208 (Mism.= 0) TFBS AC: RSP02684//OS: rice (Oryza sativa) /GENE: STAR1/TFBS: ASR5 BS /BF: ASR5 Motifs on "-" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 98 AGCCCAT 92 (Mism.= 0) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 208 AAACCCTAA 200 (Mism.= 0) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 205 CCCTAAA 199 (Mism.= 0) Totally 17 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0445..AC:X63102.1..OS:Phaseolus vulgaris..GENE:pEP-C1a..PROD:endopeptidase..[ -200: +51] ..CDS: +37..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.13 T - 0.36 C - 0.26 TFBS AC: RSP00231//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CCAAT box 1 /BF: unknown Motifs on "-" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 82 CCAATCA 76 (Mism.= 0) TFBS AC: RSP00357//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00804 Up.Conf.Int. 1 Found 1 217 CAACTCAA 210 (Mism.= 1) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 144 aAgAAAaCAAAAGCAA 129 (Mism.= 3) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "+" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 92 ATGCCCCAtA 101 (Mism.= 1) TFBS AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 207 CCATTGAGTTGA 218 (Mism.= 2) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 83 ACCAATCAt 75 (Mism.= 1) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 83 ACCAATCAt 75 (Mism.= 1) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 222 TCAAtcAACTCA 211 (Mism.= 2) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00730 Up.Conf.Int. 1 Found 1 89 ACAATGACCAAt 78 (Mism.= 1) TFBS AC: RSP02013//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_3) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00556 Up.Conf.Int. 1 Found 1 24 TACAtCTGTT 33 (Mism.= 1) TFBS AC: RSP02692//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: CACT box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 56 CAcACACTCaGA 45 (Mism.= 2) TFBS AC: RSP02962//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box D /BF: BZR1 Motifs on "-" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 154 AACAAgTGAG 145 (Mism.= 1) Totally 12 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0446..AC:U01890.1..OS:Lycopersicon penellii..GENE:His1..PROD:histone H1 protein..[ -200: +51] ..CDS: +40..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.17 T - 0.28 C - 0.18 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 69 ACACGTGGa 61 (Mism.= 1) TFBS AC: RSP00271//OS: tobacco (Nicotiana tabacum) /GENE: artifical construction/TFBS: Type III element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 100 GATCCGtG 107 --13-- 121 ACCAATCA 128 (Mism.= 1/ 0) TFBS AC: RSP00272//OS: tobacco (Nicotiana tabacum) /GENE: artifical construction/TFBS: Type II element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 110 TgACaCGGATC 100 (Mism.= 2) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 61 TCCACGTGTg 70 (Mism.= 1) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 124 TGGTCAATTt 115 (Mism.= 1) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 125 TTGGTCAATTt 115 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 69 ACACGTG 63 (Mism.= 0) TFBS AC: RSP00701//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: Oct (d) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00372 Up.Conf.Int. 1 Found 1 107 CACGGATC 100 (Mism.= 1) TFBS AC: RSP00836//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 107 CACGGATC 100 (Mism.= 0) TFBS AC: RSP00852//OS: maize (Zea mays) /GENE: H4C7/TFBS: dOCT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 107 CACGGATC 100 (Mism.= 0) TFBS AC: RSP00919//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSI /BF: MYB.Ph3 Motifs on "+" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 202 cAgAAACGGTTA 213 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 61 TCCACGTGTg 70 (Mism.= 1) TFBS AC: RSP00969//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: Aux28B2 /BF: STGA1 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 240 aTGACGgCAA 249 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 70 cACACGTGgA 61 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 70 cACACGTGgA 61 (Mism.= 2) TFBS AC: RSP01010//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB2A BS /BF: DREB2A Motifs on "-" Strand: Mean Exp. Number 0.00966 Up.Conf.Int. 1 Found 1 248 TGCCGTCAT 240 (Mism.= 1) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00289 Up.Conf.Int. 1 Found 1 219 TCTCAatAACCG 208 (Mism.= 2) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 70 CACACGTGga 61 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 69 ACACGTGG 62 (Mism.= 0) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 115 aAATTGACCAA 125 (Mism.= 1) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 115 aAATTGACCAA 125 (Mism.= 1) TFBS AC: RSP01507//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 100 GATCCGTG 107 (Mism.= 0) TFBS AC: RSP01508//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-p /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 100 GATCCGTG 107 (Mism.= 0) TFBS AC: RSP01513//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Type III element /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 100 GATCCGTG 107 --13-- 121 ACCAATCAA 129 (Mism.= 0/ 1) TFBS AC: RSP01514//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Type III element /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 100 GATCCGTG 107 --13-- 121 ACCAATCAA 129 (Mism.= 0/ 1) TFBS AC: RSP01515//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ATH1-1/TFBS: Type III element /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 100 GATCCGtG 107 --13-- 121 ACCAATCAA 129 (Mism.= 1/ 1) TFBS AC: RSP01516//OS: tomato (Lycopersicon esculentum) /GENE: H1 (U03391)/TFBS: Type III element /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 100 GATCCGtG 107 --13-- 121 ACCAATCAA 129 (Mism.= 1/ 1) TFBS AC: RSP01518//OS: wheat (Triticum aestivum) /GENE: H2B (TH 153)/TFBS: Type III element /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 100 GATCCGTG 107 --14-- 122 CCAAT 126 (Mism.= 0/ 0) TFBS AC: RSP01519//OS: maize (Zea mays) /GENE: H2B (H2B4)/TFBS: Type III element /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00001 Up.Conf.Int. 1 Found 1 100 GATCCGTG 107 --14-- 122 CCAAT 126 (Mism.= 1/ 0) TFBS AC: RSP01633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At1g08610/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 193 CTGTAATGCAA 183 (Mism.= 2) TFBS AC: RSP01636//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XCP2/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 193 CTGTAATGCAA 183 (Mism.= 2) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 60 ATCCACGTGTga 71 (Mism.= 2) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 61 TCCACGT 67 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 61 tCCACGTGTg 70 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 61 tCCACGTGTg 70 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 70 cACACGTGgA 61 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 61 TCCACGTGtg 70 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 70 CACACGTGGa 61 (Mism.= 1) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 120 CaATTTAAGG 111 (Mism.= 1) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 225 AAAATATCT 217 (Mism.= 0) TFBS AC: RSP02287//OS: pea (Pisum sativum) /GENE: TRX f/TFBS: EE (TRX f) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00812 Up.Conf.Int. 1 Found 1 216 GAGATATT 223 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "-" Strand: Mean Exp. Number 0.00711 Up.Conf.Int. 1 Found 1 69 aCACGTGG 62 (Mism.= 1) TFBS AC: RSP02408//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS1 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 138 CTCTGCAT 131 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 61 tCCACGTGTg 70 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 70 cACACGTGGA 61 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00814 Up.Conf.Int. 1 Found 1 70 CACACGTGga 61 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 61 TcCACGTGTg 70 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00498 Up.Conf.Int. 1 Found 1 70 cACACGTGGA 61 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00710 Up.Conf.Int. 1 Found 1 70 cACACGTGGA 61 (Mism.= 1) TFBS AC: RSP02631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR2/TFBS: EE /BF: RVE8 Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 226 aAAAATATCTcAA 214 (Mism.= 2) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "-" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 225 AAAATATCT 217 (Mism.= 0) TFBS AC: RSP02656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "-" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 225 AAAATATCT 217 (Mism.= 0) TFBS AC: RSP02772//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: SND1 BS /BF: SND1 Motifs on "+" Strand: Mean Exp. Number 0.00380 Up.Conf.Int. 1 Found 1 174 TTGCGTAA 181 (Mism.= 0) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 225 AAAATATCT 217 (Mism.= 0) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 217 AGATATTTT 225 (Mism.= 0) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00387 Up.Conf.Int. 1 Found 1 217 AGATATTTT 225 (Mism.= 0) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 70 cACACGTGGa 61 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 70 CACACGTGGA 61 (Mism.= 2) Totally 58 motifs of 58 different TFBSs have been found ____________________________________________________________ >PLPR0447..AC:X53596.1..OS:Oryza sativa (indica cultivar-croup)..GENE:Osgrp-1..PROD:glycine-rich cell wall protein..[ -200: +51] ..CDS: +224..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.21 T - 0.30 C - 0.18 TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 15 AcTATTTTTATT 4 (Mism.= 1) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 15 AcTATTTTTATT 4 (Mism.= 1) TFBS AC: RSP00135//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (4) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 15 AcTATTTTTATt 4 (Mism.= 2) TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "-" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 16 gAcTATTTTTATT 4 (Mism.= 2) TFBS AC: RSP00366//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: ERE /BF: TDBA12 Motifs on "+" Strand: Mean Exp. Number 0.00947 Up.Conf.Int. 1 Found 1 220 TGACTTTCTGtt 231 (Mism.= 2) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 116 AcAAGGTTAAAA 127 (Mism.= 1) TFBS AC: RSP00744//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 4 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 34 AtCAGGTAAgAC 23 (Mism.= 2) TFBS AC: RSP00788//OS: rice (Oryza sativa) /GENE: osRACD/TFBS: AT1 box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00512 Up.Conf.Int. 1 Found 1 15 AcTATTTTTATT 4 (Mism.= 1) TFBS AC: RSP00939//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 44 TAgaGTGCACAT 33 (Mism.= 2) TFBS AC: RSP00940//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box II* /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 246 TTCTACGGTG 237 (Mism.= 0) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 164 AGAAACAA 157 (Mism.= 0) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 203 ttGATCGATGA 213 (Mism.= 2) TFBS AC: RSP01825//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI5/TFBS: CE1-like element /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 235 GCCACCG 241 (Mism.= 0) TFBS AC: RSP01983//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: HVH21 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00098 Up.Conf.Int. 1 Found 1 105 CAAGTGACA 113 (Mism.= 0) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0448..AC:X53596.1..OS:Oryza sativa (indica cultivar-croup)..GENE:Osgrp-1..PROD:glycine-rich cell wall protein..[ -200: +51] ..CDS: +34..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.18 T - 0.27 C - 0.22 TFBS AC: RSP00259//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd22/TFBS: ATMYB2 BS /BF: ATMYB2 (MYB) Motifs on "+" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 137 TGGTTAG 143 (Mism.= 0) TFBS AC: RSP00585//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: TSS NN /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 196 AaAcAAGCACTTGGTa 211 (Mism.= 3) TFBS AC: RSP00700//OS: Brassica oleracea /GENE: SLG13/TFBS: Box V /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00259 Up.Conf.Int. 1 Found 1 236 ATTTTACTTcagTGCT 221 (Mism.= 3) TFBS AC: RSP00824//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: MRE-core (AtCFI) /BF: R2R3-type MYB Motifs on "+" Strand: Mean Exp. Number 0.00371 Up.Conf.Int. 1 Found 1 114 tCTACCTACCt 124 (Mism.= 2) TFBS AC: RSP00826//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: MRE-core (AtF3H) /BF: R2R3-type MYB Motifs on "+" Strand: Mean Exp. Number 0.00439 Up.Conf.Int. 1 Found 1 114 tCTACCTACCt 124 (Mism.= 2) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00377 Up.Conf.Int. 1 Found 1 179 CTATAAATA 187 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 179 CTATAAATAC 188 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 179 CTATAAATAC 188 (Mism.= 0) TFBS AC: RSP01472//OS: pea (Pisum sativum) /GENE: PsCHS1/TFBS: Box-I /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 114 TCTACCTACCt 124 (Mism.= 1) TFBS AC: RSP01528//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box I /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 114 TCTACCTACCt 124 (Mism.= 1) TFBS AC: RSP02130//OS: rice (Oryza sativa) /GENE: OsAns/TFBS: At-MYB2 BS /BF: At-MYB2 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 143 CTAACCA 137 (Mism.= 0) TFBS AC: RSP02163//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS4 /BF: WRKY transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 44 TTGACTGaTTg 54 (Mism.= 2) TFBS AC: RSP02328//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 2 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 140 ACCAACT 134 (Mism.= 0) TFBS AC: RSP02416//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 88-91 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00305 Up.Conf.Int. 1 Found 1 25 AGAGATGC 32 (Mism.= 0) TFBS AC: RSP02572//OS: mangrove tree (Avicennia marina) /GENE: AmMYB1/TFBS: AmMYB1 BS /BF: AmMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 137 TGGTTAG 143 (Mism.= 0) TFBS AC: RSP02590//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00968 Up.Conf.Int. 1 Found 1 140 ACCAACT 134 (Mism.= 0) TFBS AC: RSP02751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS1 (PAL1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00462 Up.Conf.Int. 1 Found 1 116 TACCTACC 123 (Mism.= 0) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0449..AC:L07552.1..OS:Actinidia deliciosa..GENE:actinidin protease..PROD:actinidin protease..[ -200: +51] ..CDS: +58..TSS:201 (+1) # Alternative TSS(s): +3 +5 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.09 T - 0.31 C - 0.24 TFBS AC: RSP00171//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GAGAGA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00873 Up.Conf.Int. 1 Found 1 245 GAGAGA 250 (Mism.= 0) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 143 TAAGAcCCcCC 153 (Mism.= 2) TFBS AC: RSP00243//OS: maize (Zea mays) /GENE: PEPC/TFBS: MNF1 BS core /BF: MNF1; MNB1a; MNB1b; Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 183 GTGgCCTT 176 (Mism.= 1) TFBS AC: RSP00445//OS: maize /GENE: cyPPDK1/TFBS: box e /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 76 AAAAAAGAGA 67 (Mism.= 0) TFBS AC: RSP00616//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: C-rich GG2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 166 tGCGTGGgGGGTGGGg 151 (Mism.= 3) TFBS AC: RSP00889//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: GC motif /BF: bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00942 Up.Conf.Int. 1 Found 1 160 CCACGCA 166 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 54 TTTATAtTTTTTT 66 (Mism.= 1) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 178 GGCCACT 184 (Mism.= 0) TFBS AC: RSP02088//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 128 ATgATTTTCAC 118 (Mism.= 1) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 194 GGAGGGAGAG 185 (Mism.= 1) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0450..AC:X57005.1..OS:Helianthus annuus..GENE:GUbB1..PROD:hexaubiquitin protein..[ -200: +51] ..CDS:+1054..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.10 T - 0.33 C - 0.33 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00696 Up.Conf.Int. 1 Found 1 85 ACACGTGtC 93 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 84 tACACGTGtC 93 (Mism.= 2) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00877 Up.Conf.Int. 1 Found 1 84 TaCACGTGTC 93 (Mism.= 1) TFBS AC: RSP00432//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB15 BS /BF: AtMYB15 Motifs on "-" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 43 aCACGGTAGGTaG 31 (Mism.= 2) TFBS AC: RSP00454//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif e/f /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 123 TACGTAACATt 133 (Mism.= 1) TFBS AC: RSP00462//OS: tomato (Lycopersicon esculentum) /GENE: RBCS1; RBCS2; RBCS3A;/TFBS: I-box /BF: IBF Motifs on "-" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 1 195 GGAaGAGATAAGA 183 (Mism.= 1) TFBS AC: RSP00471//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS1 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 40 GTGTGGtGCaC 50 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 85 ACACGTG 91 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 92 ACACGTG 86 (Mism.= 0) TFBS AC: RSP00679//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: O2S /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 54 aACTTGACCccCATC 68 (Mism.= 3) TFBS AC: RSP00937//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: I box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 1 183 TCTTATCTCtTCC 195 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00822 Up.Conf.Int. 1 Found 1 84 TaCACGTGTC 93 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00665 Up.Conf.Int. 1 Found 1 84 TACACGTGtc 93 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00538 Up.Conf.Int. 1 Found 1 93 gACACGTGtA 84 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00665 Up.Conf.Int. 1 Found 1 84 TACACGTGtc 93 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00538 Up.Conf.Int. 1 Found 1 93 gACACGTGtA 84 (Mism.= 2) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "-" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 1 50 gTGCaCCACA 41 (Mism.= 2) TFBS AC: RSP01006//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 1 (AC-II) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00792 Up.Conf.Int. 1 Found 1 46 ACCACAC 40 (Mism.= 1) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 87 ACGTGTC 93 (Mism.= 0) TFBS AC: RSP01056//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: GT-3a Box III (3) /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 133 AATGTTACgTa 123 (Mism.= 2) TFBS AC: RSP01092//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 1* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 27 ATAGAATCTAg 17 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00765 Up.Conf.Int. 1 Found 1 85 ACACGTGt 92 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 85 ACACGTGT 92 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 92 ACACGTGT 85 (Mism.= 0) TFBS AC: RSP01582//OS: tomato (Lycopersicon esculentum) /GENE: rbcS-1/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 197 gcGGAaGAGATAAGA 183 (Mism.= 3) TFBS AC: RSP01584//OS: tobacco (Nicotiana tabacum) /GENE: Ntss-23/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 84 TACACGTGtCACg 96 (Mism.= 2) TFBS AC: RSP01585//OS: tobacco (Nicotiana tabacum) /GENE: Ntss-23/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 197 gcGGAaGAGATAAGA 183 (Mism.= 3) TFBS AC: RSP01587//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS-8B/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 84 TACACGTGtCACg 96 (Mism.= 2) TFBS AC: RSP01588//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS-8B/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 197 gcGGAaGAGATAAGA 183 (Mism.= 3) TFBS AC: RSP01589//OS: soybean (Glycine max) /GENE: SRS-1/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 84 TaCACGTGTCACg 96 (Mism.= 2) TFBS AC: RSP01590//OS: soybean (Glycine max) /GENE: SRS-1/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 197 GCGGAAGAGATAAGA 183 (Mism.= 2) TFBS AC: RSP01592//OS: soybean (Glycine max) /GENE: SRS-4/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 197 GCGGAAGAGATAAGA 183 (Mism.= 2) TFBS AC: RSP01716//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00533 Up.Conf.Int. 1 Found 1 131 TgTTACGTAAGt 120 (Mism.= 2) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00200 Up.Conf.Int. 1 Found 1 83 GTACACGTGTcA 94 (Mism.= 1) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00610 Up.Conf.Int. 1 Found 1 84 taCACGTGTC 93 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00334 Up.Conf.Int. 1 Found 1 93 GaCACGTGTa 84 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 84 tACACGTGTC 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 93 GACACGTGTa 84 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 84 taCACGTGTC 93 (Mism.= 2) TFBS AC: RSP02017//OS: rice (Oryza sativa) /GENE: BRD1/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 39 CGTGTG 44 (Mism.= 0) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 84 tACACGTGTc 93 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 1 93 GACACGTGTA 84 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00224 Up.Conf.Int. 1 Found 1 93 GACACGTG 86 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 84 tACACGTGtC 93 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00610 Up.Conf.Int. 1 Found 1 84 TaCACGTGtC 93 (Mism.= 2) TFBS AC: RSP02174//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp9/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00058 Up.Conf.Int. 1 Found 1 162 GaaGaAGAGGCGGTCAcGGA 143 (Mism.= 4) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 83 GTACACGTGTCA 94 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 85 ACACGTGT 92 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 92 ACACGTGT 85 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 93 GaCACGTGTa 84 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00822 Up.Conf.Int. 1 Found 1 93 GACACGTGtA 84 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 84 tACACGTGTC 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 93 gACACGTGTa 84 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 1 84 TACACGTGTc 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 93 gACACGTGTa 84 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00822 Up.Conf.Int. 1 Found 1 93 GACACGTGtA 84 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 93 GACACGTGTa 84 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 93 GACACGTGtA 84 (Mism.= 1) TFBS AC: RSP02492//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (5) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 111 ACCAAC 106 (Mism.= 0) TFBS AC: RSP02493//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (6) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 46 ACCACA 41 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00224 Up.Conf.Int. 1 Found 1 86 CACGTGTC 93 (Mism.= 0) TFBS AC: RSP02770//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: VND3 BS /BF: VND3 Motifs on "-" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 132 AtGTTACGTA 123 (Mism.= 1) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00689 Up.Conf.Int. 1 Found 1 87 ACGTGTC 93 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 84 tACACGTGtC 93 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 93 GACACGTGta 84 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 84 tACACGTGtC 93 (Mism.= 2) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00972 Up.Conf.Int. 1 Found 1 84 tAcACGTGTC 93 (Mism.= 2) TFBS AC: RSP02965//OS: potato (Solanum tuberosum) /GENE: StSP5G/TFBS: StCOL1 BS /BF: StCOL1 Motifs on "+" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 41 TGTGGT 46 (Mism.= 0) Totally 68 motifs of 57 different TFBSs have been found ____________________________________________________________ >PLPR0451..AC:X57003.1..OS:Helianthus annuus..GENE:GUbB2..PROD:polyubiquitin protein..[ -200: +51] ..CDS:+1015..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.11 T - 0.31 C - 0.33 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00874 Up.Conf.Int. 1 Found 1 86 ACACGTGtC 94 (Mism.= 1) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 23 GATTCCATG 31 (Mism.= 0) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00872 Up.Conf.Int. 1 Found 1 85 TaCACGTGTC 94 (Mism.= 1) TFBS AC: RSP00406//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE-CHR /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00490 Up.Conf.Int. 1 Found 1 158 AGaGGCGG 151 -- 6-- 144 aTTGAA 139 (Mism.= 1/ 1) TFBS AC: RSP00432//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB15 BS /BF: AtMYB15 Motifs on "-" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 46 aCACGGTAGGTaG 34 (Mism.= 2) TFBS AC: RSP00454//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif e/f /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 124 TACGTAACATt 134 (Mism.= 1) TFBS AC: RSP00462//OS: tomato (Lycopersicon esculentum) /GENE: RBCS1; RBCS2; RBCS3A;/TFBS: I-box /BF: IBF Motifs on "-" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 196 GGAaGAGATAAGA 184 (Mism.= 1) TFBS AC: RSP00471//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS1 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00096 Up.Conf.Int. 1 Found 1 43 GTGTGGtGCaC 53 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 86 ACACGTG 92 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 93 ACACGTG 87 (Mism.= 0) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 211 TGAATGAATG 202 (Mism.= 1) TFBS AC: RSP00937//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: I box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 184 TCTTATCTCtTCC 196 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 85 TaCACGTGTC 94 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 85 TACACGTGtc 94 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 94 gACACGTGtA 85 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 85 TACACGTGtc 94 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 94 gACACGTGtA 85 (Mism.= 2) TFBS AC: RSP01006//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 1 (AC-II) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00935 Up.Conf.Int. 1 Found 1 49 ACCACAC 43 (Mism.= 1) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 88 ACGTGTC 94 (Mism.= 0) TFBS AC: RSP01056//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: GT-3a Box III (3) /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00859 Up.Conf.Int. 1 Found 1 134 AATGTTACgTa 124 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 86 ACACGTGt 93 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 86 ACACGTGT 93 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 93 ACACGTGT 86 (Mism.= 0) TFBS AC: RSP01582//OS: tomato (Lycopersicon esculentum) /GENE: rbcS-1/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 198 gcGGAaGAGATAAGA 184 (Mism.= 3) TFBS AC: RSP01584//OS: tobacco (Nicotiana tabacum) /GENE: Ntss-23/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00017 Up.Conf.Int. 1 Found 1 85 TACACGTGtCACg 97 (Mism.= 2) TFBS AC: RSP01585//OS: tobacco (Nicotiana tabacum) /GENE: Ntss-23/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 198 gcGGAaGAGATAAGA 184 (Mism.= 3) TFBS AC: RSP01587//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS-8B/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00017 Up.Conf.Int. 1 Found 1 85 TACACGTGtCACg 97 (Mism.= 2) TFBS AC: RSP01588//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS-8B/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 198 gcGGAaGAGATAAGA 184 (Mism.= 3) TFBS AC: RSP01589//OS: soybean (Glycine max) /GENE: SRS-1/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 85 TaCACGTGTCACg 97 (Mism.= 2) TFBS AC: RSP01590//OS: soybean (Glycine max) /GENE: SRS-1/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 198 gcGGAAGAGATAAGA 184 (Mism.= 2) TFBS AC: RSP01592//OS: soybean (Glycine max) /GENE: SRS-4/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00020 Up.Conf.Int. 1 Found 1 198 gcGGAAGAGATAAGA 184 (Mism.= 2) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00208 Up.Conf.Int. 1 Found 1 84 GTACACGTGTcA 95 (Mism.= 1) TFBS AC: RSP01719//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (2) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 132 TGTtACGTAGGt 121 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 85 taCACGTGTC 94 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00419 Up.Conf.Int. 1 Found 1 94 GaCACGTGTa 85 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 85 tACACGTGTC 94 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 94 GACACGTGTa 85 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 85 taCACGTGTC 94 (Mism.= 2) TFBS AC: RSP02017//OS: rice (Oryza sativa) /GENE: BRD1/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00953 Up.Conf.Int. 1 Found 1 42 CGTGTG 47 (Mism.= 0) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 85 tACACGTGTc 94 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00808 Up.Conf.Int. 1 Found 1 94 gACACGTGTA 85 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 94 GACACGTG 87 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 85 tACACGTGtC 94 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 85 TaCACGTGtC 94 (Mism.= 2) TFBS AC: RSP02174//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp9/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 1 163 GaaGaAGAGGCGGTCAcGGA 144 (Mism.= 4) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00146 Up.Conf.Int. 1 Found 1 84 gtACACGTGTCA 95 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 86 ACACGTGT 93 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 93 ACACGTGT 86 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 94 GaCACGTGTa 85 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 94 GACACGTGtA 85 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 85 TACACGTGTC 94 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 94 gACACGTGTa 85 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00808 Up.Conf.Int. 1 Found 1 85 TACACGTGTc 94 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 94 gACACGTGTa 85 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 94 GACACGTGtA 85 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 94 GACACGTGTa 85 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 94 GACACGTGtA 85 (Mism.= 1) TFBS AC: RSP02492//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (5) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 112 ACCAAC 107 (Mism.= 0) TFBS AC: RSP02493//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (6) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 49 ACCACA 44 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 87 CACGTGTC 94 (Mism.= 0) TFBS AC: RSP02770//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: VND3 BS /BF: VND3 Motifs on "-" Strand: Mean Exp. Number 0.00532 Up.Conf.Int. 1 Found 1 133 ATGTTACGTA 124 (Mism.= 1) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 88 ACGTGTC 94 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 85 tACACGTGtC 94 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 94 GACACGTGta 85 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 85 tACACGTGtC 94 (Mism.= 2) TFBS AC: RSP02965//OS: potato (Solanum tuberosum) /GENE: StSP5G/TFBS: StCOL1 BS /BF: StCOL1 Motifs on "+" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 44 TGTGGT 49 (Mism.= 0) Totally 66 motifs of 55 different TFBSs have been found ____________________________________________________________ >PLPR0452..AC:X13287.1..OS:Medicago sativa..GENE:Nms-25..PROD:nodulin-25 protein..[ -200: +51] ..CDS: +31..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.09 T - 0.41 C - 0.13 TFBS AC: RSP00307//OS: barley (Hordeum vulgare) /GENE: Chi26/TFBS: GCCAAG motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 144 GCCAAG 139 (Mism.= 0) TFBS AC: RSP00838//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: CCGTCG motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 6 CCGTCG 11 (Mism.= 0) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00152 Up.Conf.Int. 1 Found 1 161 GATGACTTGT 152 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 181 CTCTATATAT 172 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 104 TCACATtTGT 113 (Mism.= 1) TFBS AC: RSP01497//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS5 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00440 Up.Conf.Int. 1 Found 1 5 GCCGTCGaAT 14 (Mism.= 1) TFBS AC: RSP01498//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS5 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00440 Up.Conf.Int. 1 Found 1 5 GCCGTCGaAT 14 (Mism.= 1) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 144 GCCAAGaGTC 135 (Mism.= 1) TFBS AC: RSP01891//OS: Boea hygrometrica /GENE: BhGolS1/TFBS: W-box 2 /BF: BhWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 109 ATGTGACCaT 100 (Mism.= 1) TFBS AC: RSP01972//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E6.1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 12 TCGACGGc 5 (Mism.= 1) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00472 Up.Conf.Int. 1 Found 1 145 aGCCAAGA 138 (Mism.= 1) TFBS AC: RSP02080//OS: Humicola gricea /GENE: cbh1.1; cbh1.2; egl1; pacC/TFBS: PacC BS (cons) /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00780 Up.Conf.Int. 1 Found 1 144 GCCAAG 139 (Mism.= 0) TFBS AC: RSP02228//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GTC-box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 5 GCCGTC 10 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0453..AC:X64114.1..OS: Brassica napus..GENE:ACP05..PROD:seed-expressed acyl carrier protein..[ -200: +51] ..CDS: +70..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.20 T - 0.30 C - 0.24 TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 188 CTcGTCGTCA 179 (Mism.= 1) TFBS AC: RSP00120//OS: pea, Pisum sativum /GENE: AS1/TFBS: Box B /BF: unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00090 Up.Conf.Int. 1 Found 1 144 tAACGACAtCGTTT 157 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 227 cTCTCTCTCCT 237 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 234 AGAGAGAGA 226 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 1 236 GGAGAGAGA 228 (Mism.= 0) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00935 Up.Conf.Int. 1 Found 1 65 aTCACGTGCC 56 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 56 GGCACGTGAT 65 (Mism.= 0) TFBS AC: RSP02189//OS: tomato (Lycopersicon esculentum) /GENE: LeACS2/TFBS: CArG (LeACS2-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 110 CTTAAATTAG 101 (Mism.= 1) TFBS AC: RSP02315//OS: tobacco (Nicotiana tabacum) /GENE: MATE1/TFBS: G-box (MATE1) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 57 GCACGTGA 64 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 236 GGAGAGAGAG 227 (Mism.= 0) TFBS AC: RSP02719//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: MYBcore (DkANR) /BF: DkMyb2 Motifs on "+" Strand: Mean Exp. Number 0.00472 Up.Conf.Int. 1 Found 1 4 CTCGGTTAaG 13 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 56 GGCACGTGAT 65 (Mism.= 0) TFBS AC: RSP02912//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00183 Up.Conf.Int. 1 Found 1 56 GGCACGtGAT 65 (Mism.= 1) TFBS AC: RSP02913//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 56 GGCACGTgAT 65 (Mism.= 1) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 65 aTCACGTGCC 56 (Mism.= 1) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0454..AC:D11433.1..OS:Oryza sativa (japonica cultivar-group)..GENE:RAG1..PROD:allergenic protein..[ -200: +51] ..CDS: +26..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.15 T - 0.29 C - 0.22 TFBS AC: RSP00561//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 9/10 L /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 2 116 AATTTTTt 109 -- 7-- 101 CAtGAG 96 (Mism.= 1/ 1) 115 AtTTTTTG 108 -- 6-- 101 CAtGAG 96 (Mism.= 1/ 1) TFBS AC: RSP00629//OS: arabidopsis (Arabidopsis thaliana) /GENE: Lhcb1*3/TFBS: CCA1 BS2 /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00859 Up.Conf.Int. 1 Found 1 209 AAAAATCT 202 (Mism.= 0) TFBS AC: RSP00711//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 1 homolog /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 207 TtTCACaAACTA 218 (Mism.= 2) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "+" Strand: Mean Exp. Number 0.00672 Up.Conf.Int. 1 Found 1 27 ATGCCCCAgA 36 (Mism.= 1) TFBS AC: RSP02964//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box F /BF: BZR1 Motifs on "-" Strand: Mean Exp. Number 0.00941 Up.Conf.Int. 1 Found 1 28 ATCATATGgA 19 (Mism.= 1) Totally 6 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0455..AC:X77233.1..OS:Lycopersicon esculentum (de Ruiter 83G38)..GENE:Adh2..PROD:alcohol dehydrogenase..[ -200: +51] ..CDS: +217..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.45 G - 0.14 T - 0.29 C - 0.12 TFBS AC: RSP00197//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box BP-1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 219 gAGCAACACAaAAC 232 (Mism.= 2) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "-" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 197 aTAtTCCAATGG 186 (Mism.= 2) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 151 CCACTTG 145 (Mism.= 0) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00770 Up.Conf.Int. 1 Found 1 36 AaCgtTATTTTAGGT 50 (Mism.= 3) TFBS AC: RSP00727//OS: tobacco (Nicotiana tabacum) /GENE: Ubi.U4/TFBS: U-box /BF: unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00251 Up.Conf.Int. 1 Found 1 200 GCTTGAC 206 (Mism.= 0) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 80 AATcTTTTTTCTG 92 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 152 TCCACTTGT 144 (Mism.= 0) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00435 Up.Conf.Int. 1 Found 1 151 CCACTTG 145 (Mism.= 0) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "+" Strand: Mean Exp. Number 0.00129 Up.Conf.Int. 1 Found 1 57 TTTGTtGTATT 67 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0456..AC:X14564.1..OS:Arabidopsis thaliana..GENE:ats1B..PROD:ribulose-1,5-biphosphate carboxylase small subunit (rbcS) (EC 4.1.1.39)..[ -200: +51] ..CDS: +35..TSS:201 (+1) |Taxon: Dicot |Promot Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.18 T - 0.24 C - 0.20 TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00533 Up.Conf.Int. 1 Found 1 64 AAGATAAGA 72 (Mism.= 0) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 20 CCACTTG 14 (Mism.= 0) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00599 Up.Conf.Int. 1 Found 1 188 CAAAACCAA 196 (Mism.= 0) TFBS AC: RSP00999//OS: tobacco (Nicotiana tabacum) /GENE: rbcS-3A/TFBS: 3'-III element /BF: 3AF3 Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 171 TCACTATaTAA 181 (Mism.= 1) TFBS AC: RSP01053//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GATA-core /BF: HvMCB1 Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 66 GATAAGATA 74 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00385 Up.Conf.Int. 1 Found 3 218 GAAGAAGAA 226 (Mism.= 0) 221 GAAGAAGAA 229 (Mism.= 0) 224 GAAGAAGAA 232 (Mism.= 0) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00934 Up.Conf.Int. 1 Found 1 20 CCACTTG 14 (Mism.= 0) TFBS AC: RSP02711//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 3 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 158 GCaaAAAGCCC 148 (Mism.= 2) Totally 10 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0457..AC:X14564.1..OS:Arabidopsis thaliana..GENE:ats2B..PROD:ribulose-1,5-biphosphate carboxylase small subunit (rbcS) (EC 4.1.1.39)..[ -200: +51] ..CDS: +57..TSS:201 (+1) |Taxon: Dicot |Promot Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.19 T - 0.24 C - 0.20 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 48 tCACGTGGC 40 (Mism.= 1) TFBS AC: RSP00058//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: CE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00781 Up.Conf.Int. 1 Found 1 107 TGCCACaGG 99 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 47 CACGTGGC 40 (Mism.= 0) TFBS AC: RSP00208//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,A /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 40 GCCACGTgAtCT 51 (Mism.= 2) TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00502 Up.Conf.Int. 1 Found 1 17 AAGATAAGA 25 (Mism.= 0) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00612 Up.Conf.Int. 1 Found 1 94 TTAATCCtgTGG 105 (Mism.= 2) TFBS AC: RSP00478//OS: barley (Hordeum vulgare); Brassica napus /GENE: rbcSF1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 39 TGCCACGTGatCTTAtCcTAGTGGTC 64 (Mism.= 4) TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 1 219 GAAAAAcCAAAAGaAg 234 (Mism.= 3) TFBS AC: RSP00640//OS: maize (Zea mays) /GENE: GRF1/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 48 TCACGTGG 41 (Mism.= 0) TFBS AC: RSP00641//OS: maize (Zea mays) /GENE: GRF2/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 48 TCACGTGG 41 (Mism.= 0) TFBS AC: RSP00716//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: GT motif /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 189 CAAAACCAA 197 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 47 CACGTGGC 40 (Mism.= 0) TFBS AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/TFBS: CLE-core /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00638 Up.Conf.Int. 1 Found 1 59 GTGGTCCA 66 (Mism.= 1) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 49 ATCACGTGGC 40 (Mism.= 2) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 40 GcCACGTGAT 49 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 46 ACGTGGC 40 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00639 Up.Conf.Int. 1 Found 1 47 CACGTGGC 40 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00608 Up.Conf.Int. 1 Found 1 40 GCCACGTGat 49 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00889 Up.Conf.Int. 1 Found 1 41 CCACGTGatC 50 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 48 tCACGTGGCa 39 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 49 AtCACGTGgC 40 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 49 AtCACGTGgC 40 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 49 atCACGTGGC 40 (Mism.= 2) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 40 GCCACGTGaT 49 (Mism.= 1) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "-" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 46 ACGTGGC 40 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 40 GcCACGTGAt 49 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 49 AtCACGTGGC 40 (Mism.= 1) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 40 GcCACGTGAT 49 (Mism.= 1) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 49 aTCACGTGGc 40 (Mism.= 2) TFBS AC: RSP02926//OS: Medicago truncatula /GENE: UGT73F3/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00712 Up.Conf.Int. 1 Found 1 49 aTCACGTGgC 40 (Mism.= 2) Totally 30 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0458..AC:X14564.1..OS:Arabidopsis thaliana..GENE:ats3B..PROD:ribulose-1,5-biphosphate carboxylase small subunit (rbcS) (EC 4.1.1.39)..[ -200: +51] ..CDS: +56..TSS:201 (+1) |Taxon: Dicot |Promot Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.23 T - 0.23 C - 0.20 TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 38 GCCaCGTGGC 47 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00253 Up.Conf.Int. 1 Found 1 47 GCCaCGTGGC 38 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00288 Up.Conf.Int. 1 Found 1 38 GCCACGTGGC 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00288 Up.Conf.Int. 1 Found 1 47 GCCACGTGGC 38 (Mism.= 0) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 39 CCACGTGGCC 48 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 46 CCACGTGGCa 37 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 39 CCACGTGGCC 48 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 46 CCACGTGGCa 37 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 40 CACGTGGC 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 45 CACGTGGC 38 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 38 GcCACGTGGC 47 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 47 GcCACGTGGC 38 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 37 TGcCACGTGGCc 48 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 48 gGcCACGTGGCA 37 (Mism.= 2) TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00469 Up.Conf.Int. 1 Found 1 15 AAGATAAGA 23 (Mism.= 0) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00611 Up.Conf.Int. 1 Found 1 92 TTAATCCtgTGG 103 (Mism.= 2) TFBS AC: RSP00274//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 1 /BF: G-box binding bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 38 GCCACGTGGC 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 47 GCCACGTGGC 38 (Mism.= 0) TFBS AC: RSP00478//OS: barley (Hordeum vulgare); Brassica napus /GENE: rbcSF1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 37 TGCCACGTGGCCTTAtCcTAGTGGTg 62 (Mism.= 3) TFBS AC: RSP00581//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: LRE-TATA LL1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 166 ggTTcTCATTATATA 180 (Mism.= 3) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 38 GCCACGTGGc 47 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 47 GCCACGTGGc 38 (Mism.= 1) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 39 CCACGTGG 46 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 46 CCACGTGG 39 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 40 CACGTGGC 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 45 CACGTGGC 38 (Mism.= 0) TFBS AC: RSP00724//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I/G-box /BF: HY5 and other unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00106 Up.Conf.Int. 1 Found 1 17 GATAAGA 23 --16-- 40 CACGTGGC 47 (Mism.= 0/ 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 37 TGCCACGTGgCc 48 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 48 gGCCACGTGgCA 37 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00759 Up.Conf.Int. 1 Found 1 37 TGCCACGTGGcc 48 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 48 gGCCACGTGGcA 37 (Mism.= 2) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00795 Up.Conf.Int. 1 Found 1 38 GcCACGTGgC 47 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 38 gCCACGTGgC 47 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 41 ACGTGGC 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 44 ACGTGGC 38 (Mism.= 0) TFBS AC: RSP01053//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GATA-core /BF: HvMCB1 Motifs on "+" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 17 GATAAGATA 25 (Mism.= 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 38 GCCACGTGGC 47 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 47 GCCACGTGGC 38 (Mism.= 1) TFBS AC: RSP01215//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00578 Up.Conf.Int. 1 Found 1 157 CCTTTAGGGGG 167 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 39 CCACGTGG 46 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 46 CCACGTGG 39 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00898 Up.Conf.Int. 1 Found 1 40 CACGTGGC 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 45 CACGTGGC 38 (Mism.= 0) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 37 TGCCACGTGGcc 48 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00795 Up.Conf.Int. 1 Found 1 38 GCCACGTGgC 47 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 47 GCCACGTGgC 38 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 37 TGcCACGTGGCc 48 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 48 gGcCACGTGGCA 37 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 39 CCACGTGGCC 48 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00170 Up.Conf.Int. 1 Found 1 46 CCACGTGGCa 37 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 38 gCCACGTGgC 47 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00795 Up.Conf.Int. 1 Found 1 38 gCCACGTGGC 47 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 1 47 gCCACGTGGC 38 (Mism.= 1) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 39 CCACGTGG 46 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 46 CCACGTGG 39 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 38 GCCACGTGgc 47 (Mism.= 2) TFBS AC: RSP02442//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: MYB BS /BF: MYB2; MYB21; MYV108; MYB112; MYB116 Motifs on "+" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 107 tAAAcGACGTTAT 119 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 47 GcCACGTGGc 38 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 47 GcCACGTGGc 38 (Mism.= 2) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 39 CCACGTGG 46 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 46 CCACGTGG 39 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 41 ACGTGGC 47 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 44 ACGTGGC 38 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 47 GcCACGTGgC 38 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 47 gcCACGTGGC 38 (Mism.= 2) Totally 65 motifs of 41 different TFBSs have been found ____________________________________________________________ >PLPR0459..AC:X54306.1..OS:Papaver somniferum..GENE:gMLP15..PROD:major latex protein..[ -200: +51] ..CDS: +214..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.31 C - 0.18 TFBS AC: RSP00960//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: MYB BS /BF: HvGAMYB Motifs on "+" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 68 CAACTAAC 75 (Mism.= 0) TFBS AC: RSP01091//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00754 Up.Conf.Int. 1 Found 1 223 AaAGAATCAAA 213 (Mism.= 1) TFBS AC: RSP01604//OS: sweet potato (Ipomoea batatas) /GENE: Sporamin; beta-amylase/TFBS: SP8a /BF: SPF1 Motifs on "+" Strand: Mean Exp. Number 0.00449 Up.Conf.Int. 1 Found 1 104 ACTGTGTA 111 (Mism.= 0) TFBS AC: RSP01968//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 90 TAGGATAAA 98 (Mism.= 0) TFBS AC: RSP02526//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00955 Up.Conf.Int. 1 Found 1 117 TTGTACTA 110 (Mism.= 0) TFBS AC: RSP02529//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00955 Up.Conf.Int. 1 Found 1 117 TTGTACTA 110 (Mism.= 0) TFBS AC: RSP02721//OS: rice (Oryza sativa) /GENE: AK065090/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 60 ccCAAGTATTG 50 (Mism.= 2) TFBS AC: RSP02765//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS3 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00806 Up.Conf.Int. 1 Found 1 156 TACCAAAT 149 (Mism.= 0) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0460..AC:X15223.1..OS:Nicotiana tabacum (common tobacco)..GENE:E2..PROD:thaumatin-like protein..[ -200: +51] ..CDS: +33..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.29 C - 0.18 TFBS AC: RSP00091//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 76/65 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 184 GAtGGGTTtAAA 173 (Mism.= 2) TFBS AC: RSP00559//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 2'/box II J1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 141 TGaAATTTCAG 151 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00690 Up.Conf.Int. 1 Found 1 150 TGaAATTTCAG 140 (Mism.= 1) TFBS AC: RSP00876//OS: arabidopsis (Arabidopsis thaliana) /GENE: MCM3/TFBS: Site 1 E2F (D1) /BF: AtE2F Motifs on "-" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 74 CGtGCCAAA 66 (Mism.= 1) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "+" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 117 cAAGGACaAGAAtAT 131 (Mism.= 3) TFBS AC: RSP02831//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHSP70-4/TFBS: E2F2 BS /BF: E2F2 Motifs on "-" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 74 CGtGCCAAA 66 (Mism.= 1) Totally 6 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0461..AC:X15224.1..OS:Nicotiana tabacum (common tobacco)..GENE:E22..PROD:thaumatin-like protein..[ -200: +51] ..CDS: +35..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.16 T - 0.28 C - 0.18 TFBS AC: RSP00039//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT56; LAT59;/TFBS: 56/59 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 34 TGAAATTGTGg 44 (Mism.= 1) TFBS AC: RSP00559//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 2'/box II J1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00367 Up.Conf.Int. 1 Found 1 143 TGaAATTTCAG 153 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 152 TGaAATTTCAG 142 (Mism.= 1) TFBS AC: RSP00876//OS: arabidopsis (Arabidopsis thaliana) /GENE: MCM3/TFBS: Site 1 E2F (D1) /BF: AtE2F Motifs on "-" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 76 CGtGCCAAA 68 (Mism.= 1) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 119 cAAGGACaAGAAtAT 133 (Mism.= 3) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 10 CAaGTG 15 -- 6-- 22 CATcCA 27 (Mism.= 1/ 1) TFBS AC: RSP01271//OS: potato (Solanum tuberosum) /GENE: Pin-II/TFBS: WRE /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00972 Up.Conf.Int. 1 Found 1 11 AAGtGTAAGT 20 (Mism.= 1) TFBS AC: RSP02831//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHSP70-4/TFBS: E2F2 BS /BF: E2F2 Motifs on "-" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 76 CGTGCCAAA 68 (Mism.= 1) Totally 8 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0462..AC:Z26333.1..OS:Hordeum vulgare..GENE:prb1..PROD:pathogenesis-related protein..[ -200: +51] ..CDS: +58..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.19 T - 0.26 C - 0.24 TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 61 CATGCATG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 68 CATGCATG 61 (Mism.= 0) TFBS AC: RSP00115//OS: pea, Pisum sativum /GENE: GS2/TFBS: BOX 1 /BF: ATBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00611 Up.Conf.Int. 1 Found 1 230 ATAGAAATCAt 240 (Mism.= 1) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 72 CGTaCATGCAT 62 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 36 tGAGAGAGA 44 (Mism.= 1) TFBS AC: RSP01058//OS: Brassica napus /GENE: extA/TFBS: GT-3a Box III /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00705 Up.Conf.Int. 1 Found 1 169 TAGTGGAT 162 (Mism.= 0) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 60 tCATGCATGt 69 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 69 aCATGCATGa 60 (Mism.= 2) TFBS AC: RSP01162//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: TATA/dyad motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 245 TATAAAtgATTTC 233 (Mism.= 2) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 61 CATGCATG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 68 CATGCATG 61 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 61 CATGCATG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 68 CATGCATG 61 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 60 TCATGCATGT 69 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 63 TgCaTGTACGTC 74 (Mism.= 2) TFBS AC: RSP01642//OS: tobacco (Nicotiana tabacum) /GENE: WIPK/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 152 AAATGTCTgC 143 (Mism.= 1) TFBS AC: RSP01644//OS: tobacco (Nicotiana tabacum) /GENE: tpoxN1/TFBS: VWRE (np5-1) /BF: WRAF1; WRAF2 Motifs on "+" Strand: Mean Exp. Number 0.00039 Up.Conf.Int. 1 Found 1 98 TccAAGAAAATTC 110 (Mism.= 2) TFBS AC: RSP02700//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-2 /BF: HvHsfB2c Motifs on "+" Strand: Mean Exp. Number 0.00773 Up.Conf.Int. 1 Found 1 82 TGGAATTcTT 91 (Mism.= 1) TFBS AC: RSP02701//OS: barley (Hordeum vulgare) /GENE: HvHsp17.5CI/TFBS: HSE-1 /BF: HvHsfB2c Motifs on "-" Strand: Mean Exp. Number 0.00164 Up.Conf.Int. 1 Found 1 91 AAgAATTCCAC 81 (Mism.= 1) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 61 CATGCATG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 68 CATGCATG 61 (Mism.= 0) TFBS AC: RSP02775//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC092-FL BS /BF: ANAC092-FL Motifs on "-" Strand: Mean Exp. Number 0.00455 Up.Conf.Int. 1 Found 1 143 CAGcTTGCGT 134 (Mism.= 1) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 61 CATGCATG 68 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 68 CATGCATG 61 (Mism.= 0) Totally 24 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0463..AC:AF316552.1..OS:Petunia hybrida..GENE:flavonol 3-O-galactosyltransferase..PROD:UDP galactose:flavonol 3-O-galactosyltransferase-like protein..[ -200: +51] ..CDS: +46..TSS:201 (+1) |Taxo Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.14 T - 0.31 C - 0.19 TFBS AC: RSP00289//OS: oat, Avena sativa /GENE: phyA3/TFBS: "-381 sequence" /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00017 Up.Conf.Int. 1 Found 1 19 GAAATAGCAAccaTTAAAAgTA 40 (Mism.= 4) TFBS AC: RSP00488//OS: soybean (Glycine max) /GENE: chs1/TFBS: UVLRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 199 CTcCGTAGCC 208 (Mism.= 1) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00194 Up.Conf.Int. 1 Found 1 242 CCAAAATGT 250 (Mism.= 0) TFBS AC: RSP02090//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 57 AAaCTTTGCAA 67 (Mism.= 1) TFBS AC: RSP02193//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00069 Up.Conf.Int. 1 Found 1 29 CCATTAAAAG 38 (Mism.= 0) TFBS AC: RSP02619//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE2 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00451 Up.Conf.Int. 1 Found 1 14 AACGTGAA 21 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0464..AC:AJ288901.1..OS:Dendrobium grex Madame Thong-IN..GENE:DOMADS1..PROD:MADS box protein DOMADS1..[ -200: +51] ..CDS: +177..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.23 G - 0.19 T - 0.29 C - 0.29 TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00070 Up.Conf.Int. 1 Found 1 36 CATcCA 41 -- 7-- 49 CACGTG 54 (Mism.= 1/ 0) TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00877 Up.Conf.Int. 1 Found 1 112 TTTAGGG 118 (Mism.= 0) TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 68 TCAAtAATATGg 79 (Mism.= 2) TFBS AC: RSP00479//OS: tobacco (Nicotiana tabacum) /GENE: ZGT/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 58 AGGACACGTGTtGg 45 (Mism.= 2) TFBS AC: RSP00530//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00441 Up.Conf.Int. 1 Found 1 205 TCcTTTTTAtCT 194 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 139 cTCTCTCTCCT 149 (Mism.= 1) TFBS AC: RSP00778//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtS1/TFBS: Box III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 1 70 TGAATAAATG 61 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00357 Up.Conf.Int. 1 Found 9 146 AGAGAGAGA 138 (Mism.= 0) 144 AGAGAGAGA 136 (Mism.= 0) 142 AGAGAGAGA 134 (Mism.= 0) 140 AGAGAGAGA 132 (Mism.= 0) 138 AGAGAGAGA 130 (Mism.= 0) 136 AGAGAGAGA 128 (Mism.= 0) 134 AGAGAGAGA 126 (Mism.= 0) 132 AGAGAGAGA 124 (Mism.= 0) 130 AGAGAGAGA 122 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 148 GGAGAGAGA 140 (Mism.= 0) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00896 Up.Conf.Int. 1 Found 1 66 tAAATGAAAG 57 (Mism.= 1) TFBS AC: RSP01058//OS: Brassica napus /GENE: extA/TFBS: GT-3a Box III /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 44 TAGTGGAT 37 (Mism.= 0) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 48 ACACGTGT 55 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 55 ACACGTGT 48 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00190 Up.Conf.Int. 1 Found 8 149 agGAGAGAGAGAGAGAg 133 (Mism.= 3) 147 GAGAGAGAGAGAGAGAg 131 (Mism.= 1) 145 GAGAGAGAGAGAGAGAg 129 (Mism.= 1) 143 GAGAGAGAGAGAGAGAg 127 (Mism.= 1) 141 GAGAGAGAGAGAGAGAg 125 (Mism.= 1) 139 GAGAGAGAGAGAGAGAg 123 (Mism.= 1) 137 GAGAGAGAGAGAGAGAA 121 (Mism.= 0) 135 GAGAGAGAGAGAGAaAc 119 (Mism.= 2) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 57 GgACACGTGTTg 46 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 47 aACACGTGTC 56 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 56 GACACGTGTt 47 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 47 AaCACGTGTC 56 (Mism.= 1) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00233 Up.Conf.Int. 1 Found 1 47 AACACGTGTc 56 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 56 GACACGTG 49 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 47 AACACGTGtC 56 (Mism.= 1) TFBS AC: RSP02105//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00867 Up.Conf.Int. 1 Found 1 191 AAAAGAT 197 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00211 Up.Conf.Int. 1 Found 1 46 CAACACGTGTCc 57 (Mism.= 1) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 48 ACACGTGT 55 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00327 Up.Conf.Int. 1 Found 1 55 ACACGTGT 48 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 9 119 gTtTCTCTCTCTCTCT 134 (Mism.= 2) 121 tTCTCTCTCTCTCTCT 136 (Mism.= 1) 123 CTCTCTCTCTCTCTCT 138 (Mism.= 0) 125 CTCTCTCTCTCTCTCT 140 (Mism.= 0) 127 CTCTCTCTCTCTCTCT 142 (Mism.= 0) 129 CTCTCTCTCTCTCTCT 144 (Mism.= 0) 131 CTCTCTCTCTCTCTCT 146 (Mism.= 0) 133 CTCTCTCTCTCTCTCc 148 (Mism.= 1) 135 CTCTCTCTCTCTCctT 150 (Mism.= 2) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00375 Up.Conf.Int. 1 Found 1 148 GGAGAGAGAG 139 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 56 GaCACGTGTT 47 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00420 Up.Conf.Int. 1 Found 1 47 aACACGTGTC 56 (Mism.= 1) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 55 ACACGTGTTg 46 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00233 Up.Conf.Int. 1 Found 1 56 gACACGTGTT 47 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 56 GACACGTGTT 47 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 49 CACGTGTC 56 (Mism.= 0) TFBS AC: RSP02710//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 2 /BF: DOF2 Motifs on "+" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 196 ATaaAAAGGAG 206 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 47 AACACGTGtC 56 (Mism.= 1) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00877 Up.Conf.Int. 1 Found 1 118 CCCTAAA 112 (Mism.= 0) Totally 59 motifs of 33 different TFBSs have been found ____________________________________________________________ >PLPR0465..AC:AJ288901.1..OS:Dendrobium grex Madame Thong-IN..GENE:DOMADS1..PROD:MADS box protein DOMADS1..[ -200: +51] ..CDS: +65..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.20 T - 0.27 C - 0.25 TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00284 Up.Conf.Int. 1 Found 1 27 cTCTCTCTCCT 37 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 9 34 AGAGAGAGA 26 (Mism.= 0) 32 AGAGAGAGA 24 (Mism.= 0) 30 AGAGAGAGA 22 (Mism.= 0) 28 AGAGAGAGA 20 (Mism.= 0) 26 AGAGAGAGA 18 (Mism.= 0) 24 AGAGAGAGA 16 (Mism.= 0) 22 AGAGAGAGA 14 (Mism.= 0) 20 AGAGAGAGA 12 (Mism.= 0) 18 AGAGAGAGA 10 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00120 Up.Conf.Int. 1 Found 1 36 GGAGAGAGA 28 (Mism.= 0) TFBS AC: RSP01208//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 224 CCAGTGTTTTAG 235 (Mism.= 2) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00378 Up.Conf.Int. 1 Found 1 224 CCAGTGTTTTAG 235 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 8 37 agGAGAGAGAGAGAGAg 21 (Mism.= 3) 35 GAGAGAGAGAGAGAGAg 19 (Mism.= 1) 33 GAGAGAGAGAGAGAGAg 17 (Mism.= 1) 31 GAGAGAGAGAGAGAGAg 15 (Mism.= 1) 29 GAGAGAGAGAGAGAGAg 13 (Mism.= 1) 27 GAGAGAGAGAGAGAGAg 11 (Mism.= 1) 25 GAGAGAGAGAGAGAGAA 9 (Mism.= 0) 23 GAGAGAGAGAGAGAaAc 7 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 167 CCATTTTTAG 158 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00657 Up.Conf.Int. 1 Found 1 167 CCATTTTTAG 158 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 9 7 gTtTCTCTCTCTCTCT 22 (Mism.= 2) 9 tTCTCTCTCTCTCTCT 24 (Mism.= 1) 11 CTCTCTCTCTCTCTCT 26 (Mism.= 0) 13 CTCTCTCTCTCTCTCT 28 (Mism.= 0) 15 CTCTCTCTCTCTCTCT 30 (Mism.= 0) 17 CTCTCTCTCTCTCTCT 32 (Mism.= 0) 19 CTCTCTCTCTCTCTCT 34 (Mism.= 0) 21 CTCTCTCTCTCTCTCc 36 (Mism.= 1) 23 CTCTCTCTCTCTCctT 38 (Mism.= 2) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00109 Up.Conf.Int. 1 Found 1 36 GGAGAGAGAG 27 (Mism.= 0) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "-" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 208 GTTTCCTTCC 199 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 158 CTAAAAATGG 167 (Mism.= 1) Totally 35 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0466..AC:AJ288901.1 AF198174.1..OS:Dendrobium grex Madame Thong-IN..GENE:DOMADS1..PROD:MADS box protein DOMADS1..[ -200: +51] ..CDS: +27..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.26 T - 0.21 C - 0.19 TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.01000 Up.Conf.Int. 1 Found 1 116 AtgAAAGCAA 107 (Mism.= 2) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 93 CCCCTCtTC 101 (Mism.= 1) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 1 220 AGAAAGAAA 228 (Mism.= 0) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 214 AGAAAGAGA 222 (Mism.= 0) TFBS AC: RSP00870//OS: wheat (Triticum aestivum) /GENE: LMWG-1D1/TFBS: EM2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 20 gGTAAAAGTG 11 (Mism.= 1) TFBS AC: RSP01006//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 1 (AC-II) /BF: PtMYB1; PtMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00736 Up.Conf.Int. 1 Found 1 18 ACCACCC 24 (Mism.= 0) TFBS AC: RSP01208//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00140 Up.Conf.Int. 1 Found 1 186 CCAGTGTTTTAG 197 (Mism.= 2) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "+" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 186 CCAGTGTTTTAG 197 (Mism.= 2) TFBS AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/TFBS: PLE-79 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 111 AGCAAGA 105 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 2 207 aAGgGAGAGAaAGAGAA 223 (Mism.= 3) 211 GAGAGAaAGAGAaAGAA 227 (Mism.= 2) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "+" Strand: Mean Exp. Number 0.00727 Up.Conf.Int. 1 Found 1 84 aTGGGgCCTCC 94 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 129 CCATTTTTAG 120 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 3 227 tTCTtTCTCTtTCTCT 212 (Mism.= 3) 225 CTtTCTCTtTCTCTCc 210 (Mism.= 3) 223 tTCTCTtTCTCTCcCT 208 (Mism.= 3) TFBS AC: RSP02777//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NTL8 BS /BF: NTL8 Motifs on "-" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 170 GTTTCCTTCC 161 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00875 Up.Conf.Int. 1 Found 1 120 CTAAAAATGG 129 (Mism.= 1) Totally 18 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0467..AC:X98080.1..OS:Arabidopsis thaliana..GENE:dhdps..PROD:dihydrodipicolinate synthase..[ -200: +51] ..CDS: +235..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.27 C - 0.24 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 92 GGACGtGTGGg 102 (Mism.= 2) TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00126 Up.Conf.Int. 1 Found 1 100 CACACGTC 93 (Mism.= 0) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00706 Up.Conf.Int. 1 Found 1 53 ATtCATATTTTtGtT 39 (Mism.= 3) TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "+" Strand: Mean Exp. Number 0.00063 Up.Conf.Int. 1 Found 1 195 TCTCCCGCC 203 (Mism.= 0) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00365 Up.Conf.Int. 1 Found 1 105 CGGCCCA 99 (Mism.= 0) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 207 TTCTTTCA 214 (Mism.= 0) TFBS AC: RSP02738//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: LOB BS /BF: LOB Motifs on "-" Strand: Mean Exp. Number 0.00769 Up.Conf.Int. 1 Found 1 207 AaGCGGCGGGA 197 (Mism.= 1) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00913 Up.Conf.Int. 1 Found 1 98 GTGGGCCG 105 (Mism.= 1) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0468..AC:AJ223307.1..OS:Brassica napus..GENE:iMyAP..PROD:myrosinase-associated protein..[ -200: +51] ..CDS: +34..TSS:201 (+1) # Alternative TSS(s): -3 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.39 C - 0.20 TFBS AC: RSP00760//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: motif III /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 72 AaATAAT 66 --31-- 34 ATTATAT 28 (Mism.= 1/ 0) TFBS AC: RSP00880//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M1 /BF: DOF Motifs on "+" Strand: Mean Exp. Number 0.00145 Up.Conf.Int. 1 Found 1 232 CAAtGGCAAC 241 (Mism.= 1) TFBS AC: RSP01208//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 237 CCATTGTTGTGG 226 (Mism.= 1) TFBS AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 237 CCATTGTTGTGG 226 (Mism.= 2) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 176 ATTTATATATaTA 164 (Mism.= 1) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00810 Up.Conf.Int. 1 Found 1 86 TCACATGTtT 95 (Mism.= 1) TFBS AC: RSP01755//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS1 /BF: C1 Motifs on "+" Strand: Mean Exp. Number 0.00208 Up.Conf.Int. 1 Found 1 238 CAACCACC 245 (Mism.= 0) TFBS AC: RSP02003//OS: Arabidopsis (Arabidopsis thaliana)\ /GENE: ABI5/TFBS: W-box 4 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00115 Up.Conf.Int. 1 Found 1 7 CGCTGTCACttT 18 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 186 GACACGgG 193 (Mism.= 1) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 52 ATgCTGACAAAa 41 (Mism.= 2) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0469..AC:AB006777.1..OS:Arabidopsis thaliana..GENE:vsp1..PROD:vegetative storage protein..[ -200: +51] ..CDS: +40..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.26 C - 0.25 TFBS AC: RSP00382//OS: spinach (Spinacia oleracea) /GENE: rps1/TFBS: S1F BS2 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 35 GGTGTAaGTGAAAAtA 50 (Mism.= 2) TFBS AC: RSP00597//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: GT-1/16 JJ1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00673 Up.Conf.Int. 1 Found 1 205 GTTtATTTGTGT 194 (Mism.= 1) TFBS AC: RSP00635//OS: soybean (Glycine max) /GENE: SAUR 15A/TFBS: NDE Box 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 78 GGTCCCAT 71 (Mism.= 0) TFBS AC: RSP00866//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: G-box /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 21 GCACGTTG 14 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 117 TAaGTGTACGTa 106 (Mism.= 2) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 47 TTTCACTT 40 (Mism.= 0) TFBS AC: RSP01932//OS: soybean (Glycine max) /GENE: N23/TFBS: InvA/InvB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 179 ACcACCCTTTGT 190 (Mism.= 1) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 45 AAAATATCT 53 (Mism.= 0) TFBS AC: RSP02492//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (5) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00729 Up.Conf.Int. 1 Found 1 60 ACCAAC 55 (Mism.= 0) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 45 AAAATATCT 53 (Mism.= 0) TFBS AC: RSP02656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 45 AAAATATCT 53 (Mism.= 0) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 45 AAAATATCT 53 (Mism.= 0) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 53 AGATATTTT 45 (Mism.= 0) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 53 AGATATTTT 45 (Mism.= 0) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 21 GCACGTtGAG 12 (Mism.= 1) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 21 GCACGTtGAG 12 (Mism.= 1) TFBS AC: RSP02917//OS: pear (Pyrus bretschneideri) /GENE: PbANR/TFBS: PbMYB9 BS /BF: PbMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 55 GTTGGTT 61 (Mism.= 1) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0470..AC:AB006778.1..OS:Arabidopsis thaliana..GENE:vsp2..PROD:vegetative storage protein..[ -200: +51] ..CDS: +28..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.10 T - 0.27 C - 0.25 TFBS AC: RSP00382//OS: spinach (Spinacia oleracea) /GENE: rps1/TFBS: S1F BS2 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00039 Up.Conf.Int. 1 Found 1 20 GGTGTAaGTGAAAAat 35 (Mism.= 3) TFBS AC: RSP00404//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adja /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 172 TTTGCGT 178 (Mism.= 0) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00286 Up.Conf.Int. 1 Found 1 158 TATAAATACCAc 169 (Mism.= 1) TFBS AC: RSP00635//OS: soybean (Glycine max) /GENE: SAUR 15A/TFBS: NDE Box 3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00066 Up.Conf.Int. 1 Found 1 62 GGTCCCAT 55 (Mism.= 0) TFBS AC: RSP00970//OS: soybean (Glycine max) /GENE: Auxin-regulated genes/TFBS: CRE (G/A) /BF: STF1; STF2; STGA1; Motifs on "-" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 1 181 GTGACGCAA 173 (Mism.= 0) TFBS AC: RSP01006//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 1 (AC-II) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 22 ACCACTC 16 (Mism.= 1) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00805 Up.Conf.Int. 1 Found 1 244 TTTCACTT 251 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 32 TTTCACTT 25 (Mism.= 0) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 55 aTGGGACCaG 64 (Mism.= 2) Totally 9 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0471..AC:Y14572.1..OS:Solanum tuberosum..GENE:phyB..PROD:phytochrome B..[ -200: +51] ..CDS: +74..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.14 T - 0.33 C - 0.16 TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00913 Up.Conf.Int. 1 Found 1 206 TTTAGGG 212 (Mism.= 0) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 207 TTAGGGTTT 215 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 215 AAACCCTAA 207 (Mism.= 0) TFBS AC: RSP00405//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adjb /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 159 TTTGGAGT 166 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 207 TTAGGGTTT 215 (Mism.= 0) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 1 55 TTTTGtTTTTTtTcTC 40 (Mism.= 3) TFBS AC: RSP01250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtpC/TFBS: CBF-C BS /BF: CBF-C Motifs on "+" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 145 AAAATTCAAT 154 (Mism.= 0) TFBS AC: RSP01294//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 231 TTTCCATGtAaT 242 (Mism.= 2) TFBS AC: RSP01299//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Box 5 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 231 TTTCCATGtAaT 242 (Mism.= 2) TFBS AC: RSP01300//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATCSATSS element /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 231 TTTCCATGtAaT 242 (Mism.= 2) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00649 Up.Conf.Int. 1 Found 1 216 aAAACCCTAA 207 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 216 aaAACCCTAA 207 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 215 AAACCCTA 208 (Mism.= 0) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00964 Up.Conf.Int. 1 Found 1 200 TTCAgTTGAG 191 (Mism.= 1) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 208 TAGGGTTT 215 (Mism.= 0) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 215 AAACCCTAA 207 (Mism.= 0) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00913 Up.Conf.Int. 1 Found 1 212 CCCTAAA 206 (Mism.= 0) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "-" Strand: Mean Exp. Number 0.00638 Up.Conf.Int. 1 Found 1 10 AGAAACTgCC 1 (Mism.= 1) Totally 18 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0472..AC:Y14572.1..OS:Solanum tuberosum..GENE:phyB..PROD:phytochrome B..[ -200: +51] ..CDS: +137..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.14 T - 0.32 C - 0.16 TFBS AC: RSP00405//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adjb /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00284 Up.Conf.Int. 1 Found 2 53 TTTGGAGT 60 (Mism.= 0) 222 TTTGGAGT 229 (Mism.= 0) TFBS AC: RSP00960//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: MYB BS /BF: HvGAMYB Motifs on "+" Strand: Mean Exp. Number 0.00624 Up.Conf.Int. 1 Found 1 30 CAACTAAC 37 (Mism.= 0) TFBS AC: RSP01250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtpC/TFBS: CBF-C BS /BF: CBF-C Motifs on "+" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 208 AAAATTCAAT 217 (Mism.= 0) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 73 AGAAACTgCC 64 (Mism.= 1) Totally 5 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0473..AC:U45858.1..OS:Zea mays..GENE:gpc2..PROD:glyceraldehyde-3-phosphate dehydrogenase..[ -200: +51] ..CDS: +76..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.14 T - 0.27 C - 0.38 TFBS AC: RSP00157//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 88 ATTTATAccAAT 99 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 99 ATTggTATAAAT 88 (Mism.= 2) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 190 tCCACCTCAGCT 201 (Mism.= 1) TFBS AC: RSP00284//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box A /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00816 Up.Conf.Int. 1 Found 1 32 CCGTCC 27 (Mism.= 0) TFBS AC: RSP00358//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 65 CAACTCCT 58 (Mism.= 1) TFBS AC: RSP00849//OS: maize (Zea mays) /GENE: H3C4/TFBS: CCGTCC motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00816 Up.Conf.Int. 1 Found 1 32 CCGTCC 27 (Mism.= 0) TFBS AC: RSP00856//OS: maize (Zea mays) /GENE: H4C7/TFBS: CCGTCC motif /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00816 Up.Conf.Int. 1 Found 1 32 CCGTCC 27 (Mism.= 0) TFBS AC: RSP01039//OS: parsley, Petroselinum crispum /GENE: Icy/TFBS: DOF BS1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 20 GAAAGG 25 (Mism.= 0) TFBS AC: RSP01175//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 2 /BF: Zmhox1a Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 38 AcCTGtCCGTC 28 (Mism.= 2) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 80 cTTTATtTATTTA 92 (Mism.= 2) TFBS AC: RSP01678//OS: Catharanthus roseus /GENE: ORSA3/TFBS: JRE (Quant. Seq.) /BF: AT-Hook Proteins Motifs on "+" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 96 CAATAAAAaATa 107 (Mism.= 2) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00910 Up.Conf.Int. 1 Found 1 84 ATTTaTTTAT 93 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 94 TATAAATA 87 (Mism.= 0) Totally 13 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0474..AC:U45859.1..OS:Zea mays..GENE:gpc4..PROD:glyceraldehyde-3-phosphate dehydrogenase..[ -200: +51] ..CDS: +68..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.16 G - 0.20 T - 0.22 C - 0.42 TFBS AC: RSP00018//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF4 /BF: SEF4, soybean Embryo Factor 4 Motifs on "+" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 56 ATTTTTG 62 (Mism.= 0) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00246 Up.Conf.Int. 1 Found 1 158 TTATATA 164 (Mism.= 0) TFBS AC: RSP00337//OS: soybean (Glycine max) /GENE: beta-conglicinin (7S globulin) alpha' and beta subunits genes/TFBS: SEF1 BS /BF: SEF1 Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 165 ATATaTAAA 157 (Mism.= 1) TFBS AC: RSP00566//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: TATA P /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 154 CCTTtTATAT 163 (Mism.= 1) TFBS AC: RSP01065//OS: arabidopsis (Arabidopsis thaliana) /GENE: At5g64250/TFBS: Fungus RE /BF: homeodomain transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 2 238 AGGATgGATGg 228 (Mism.= 2) 218 gaGATCGATGA 208 (Mism.= 2) TFBS AC: RSP01115//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00421 Up.Conf.Int. 1 Found 1 62 CAAAAAT 56 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00180 Up.Conf.Int. 1 Found 1 156 tTtTATATAT 165 (Mism.= 2) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 97 CTGGGCCCaCC 87 (Mism.= 1) TFBS AC: RSP01478//OS: spinach (Spinacia oleracea) /GENE: RPL21/TFBS: BC-2 /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 56 ATTTttGCCgAAACC 70 (Mism.= 3) TFBS AC: RSP01599//OS: spinach (Spinacia oleracea) /GENE: RPS1/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 220 TTTCAAAT 227 (Mism.= 0) TFBS AC: RSP01889//OS: French bean (Phaseolus vulgaris) /GENE: grp1.8/TFBS: VSF-1 BS2 /BF: VSF-1 Motifs on "+" Strand: Mean Exp. Number 0.00282 Up.Conf.Int. 1 Found 1 97 GcCAGCAGcAGC 108 (Mism.= 2) TFBS AC: RSP02073//OS: maize (Zea mays) /GENE: GapC4/TFBS: 40 bp AnNRR /BF: AP2/EREBP transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 116 GCAACCGCAGtCGCAGCCGCAGCCGCCAGTCCCCAGTCCC 155 (Mism.= 1) TFBS AC: RSP02074//OS: maize (Zea mays) /GENE: GapC4/TFBS: 28 bp AnNRR /BF: AP2/EREBP transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 3 104 GCAgCCGCAGCCGCAaCCGCAGtCGCag 131 (Mism.= 5) 110 GCAgCCGCAaCCGCAGtCGCAGCCGCag 137 (Mism.= 5) 116 GCAACCGCAGtCGCAGCCGCAGCCGCCA 143 (Mism.= 1) TFBS AC: RSP02380//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ROSE7/GCC box /BF: ERF6 Motifs on "+" Strand: Mean Exp. Number 0.00010 Up.Conf.Int. 1 Found 1 124 AGtCGCaGCCGCaGCCGCC 142 (Mism.= 3) TFBS AC: RSP02872//OS: Artemisia annua /GENE: DBR2/TFBS: WRKY BS1 /BF: WRKY Motifs on "-" Strand: Mean Exp. Number 0.00635 Up.Conf.Int. 1 Found 1 28 GGTGACAA 21 (Mism.= 0) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 88 GTGGGCCC 95 (Mism.= 0) Totally 19 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0475..AC:M21415.1..OS:Arabidopsis thaliana..GENE:ABT 4..PROD:beta-tubulin-4..[ -200: +51] ..CDS: +112..TSS:201 (+1) # Alternative TSS(s): +11 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.45 G - 0.13 T - 0.25 C - 0.17 TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00187 Up.Conf.Int. 1 Found 1 11 cCCACTTGTC 2 (Mism.= 1) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00439 Up.Conf.Int. 1 Found 1 10 CCACTTG 4 (Mism.= 0) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "-" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 29 AAAATATAT 21 (Mism.= 0) TFBS AC: RSP01228//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 192 ATTCAaCAAaTCCC 205 (Mism.= 2) TFBS AC: RSP01720//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: C/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 158 gAAGACGTAAAC 169 (Mism.= 1) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00743 Up.Conf.Int. 1 Found 1 11 cCCACTTGT 3 (Mism.= 1) TFBS AC: RSP02076//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS2 /BF: PacC Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 225 aGCCAAGG 232 (Mism.= 1) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "+" Strand: Mean Exp. Number 0.00764 Up.Conf.Int. 1 Found 1 120 ACCAATTTGAA 130 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00439 Up.Conf.Int. 1 Found 1 10 CCACTTG 4 (Mism.= 0) TFBS AC: RSP02593//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE2 (AG2) /BF: AGAMOUS Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 193 ATAGGTAA 186 (Mism.= 0) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 7 GTGGGACaGt 16 (Mism.= 2) TFBS AC: RSP02849//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VITL1/TFBS: VP1 /BF: WRKY46 Motifs on "+" Strand: Mean Exp. Number 0.00695 Up.Conf.Int. 1 Found 1 209 TTTTaaACCTAT 220 (Mism.= 2) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 169 CTATATATAG 178 (Mism.= 1) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0476..AC:U74631.1..OS:Ricinus communis..GENE:calreticulin..PROD:calreticulin..[ -200: +51] ..CDS: +25..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.30 C - 0.25 TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 139 gTTAAAaTATgTATTT 124 (Mism.= 3) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 79 TCCACGTAaC 88 (Mism.= 1) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 29 GcCATGTCAT 38 (Mism.= 1) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 126 ATaCATATTTTAacT 140 (Mism.= 3) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 220 AGAGAGAGA 212 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 79 TCCACGTAaC 88 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00472 Up.Conf.Int. 1 Found 1 169 CTATAAATA 177 (Mism.= 0) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00521 Up.Conf.Int. 1 Found 1 229 cGAACCCTAA 238 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 228 CCATTTCTAG 219 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 154 GAAGAAGAA 162 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00271 Up.Conf.Int. 1 Found 2 181 CTCTCaCTCTCTtaCT 196 (Mism.= 3) 183 CTCaCTCTCTtaCTCT 198 (Mism.= 3) TFBS AC: RSP02768//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC055 BS /BF: ANAC055 Motifs on "-" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 90 cAGTTACGTG 81 (Mism.= 1) TFBS AC: RSP02769//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC019 BS /BF: ANAC019 Motifs on "-" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 90 cAGTTACGTG 81 (Mism.= 1) TFBS AC: RSP02771//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: VND7 BS /BF: VND7 Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 91 CCAGTTACGT 82 (Mism.= 1) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 241 CTCTCTCAC 249 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00678 Up.Conf.Int. 1 Found 1 219 CTAGAAATGG 228 (Mism.= 1) Totally 17 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0477..AC:AF240774.1..OS:Phaseolus vulgaris..GENE:LEA-18..PROD:late embryogenesis-abundant protein (induced to response to dehydration)..[ -200: +51] ..CDS: +23..TSS:201 (+1) |Taxon: Dicot |Prom Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.36 T - 0.20 C - 0.08 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 14 ACACGTGGg 22 (Mism.= 1) TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 134 CACACGTC 127 (Mism.= 0) TFBS AC: RSP00122//OS: pea, Pisum sativum /GENE: AS1/TFBS: Box C /BF: unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 94 CTgCCAC 100 (Mism.= 1) TFBS AC: RSP00180//OS: barley (Hordeum vulgare) /GENE: EPB-1/TFBS: GARE-4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 212 GTAAgAGAAaGaTGG 226 (Mism.= 3) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 96 GCCACGTtAG 105 (Mism.= 1) TFBS AC: RSP00248//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB2 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 96 GCCACGTtAG 105 (Mism.= 1) TFBS AC: RSP00354//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00976 Up.Conf.Int. 1 Found 1 104 TAACGTGG 97 (Mism.= 1) TFBS AC: RSP00405//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: adjb /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 11 TTTGGAGT 4 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00522 Up.Conf.Int. 1 Found 1 14 ACACGTG 20 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 22 cCCACGTGtA 13 (Mism.= 2) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 52 AACAACCTCTTTC 40 (Mism.= 2) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 96 GCCACGTtAG 105 (Mism.= 1) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00814 Up.Conf.Int. 1 Found 1 13 TACACGTGgg 22 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 22 cCCACGTGTa 13 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 13 TACACGTGgg 22 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00370 Up.Conf.Int. 1 Found 1 13 TACACGTGgg 22 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 102 ACGTGGC 96 (Mism.= 0) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "-" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 52 AACAACCTCTTTC 40 (Mism.= 2) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 21 CCACGTGt 14 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 14 ACACGTGG 21 (Mism.= 0) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00898 Up.Conf.Int. 1 Found 1 21 cCACGTGT 14 (Mism.= 1) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 104 TaACGTGG 97 (Mism.= 1) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 104 TaACGTGG 97 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 103 aACGTGGC 96 (Mism.= 1) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00137 Up.Conf.Int. 1 Found 1 95 TGCCACGTtaGT 106 (Mism.= 2) TFBS AC: RSP01778//OS: Gossypium arboreum /GENE: GaMYB2/TFBS: T/G-box /BF: GL3 (Arabidopsis); ChDEL65 (cotton Motifs on "-" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 103 AACGTG 98 (Mism.= 0) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "-" Strand: Mean Exp. Number 0.00481 Up.Conf.Int. 1 Found 1 22 cCCACGTGTa 13 (Mism.= 2) TFBS AC: RSP01864//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE2 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00707 Up.Conf.Int. 1 Found 1 103 AACGTGGC 96 (Mism.= 0) TFBS AC: RSP01883//OS: Indian mustard (Brassica juncea) /GENE: BjCHI1/TFBS: T/G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 103 AACGTG 98 (Mism.= 0) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 105 CTaACGTGGC 96 (Mism.= 1) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 21 CCACGTGtaC 12 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 22 cCCACGTGTa 13 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 22 ccCACGTGTA 13 (Mism.= 2) TFBS AC: RSP02062//OS: Chlamydomonas reinhardtii /GENE: C3/TFBS: E-box /BF: GBP1; C3 Motifs on "+" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 32 CATCTG 37 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 1 13 TaCACGTGGg 22 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 13 tACACGTGGG 22 (Mism.= 1) TFBS AC: RSP02224//OS: Arabidopsis (Arabidopsis thaliana) /GENE: /TFBS: MYC2/MYC3/MYC4 BS1 /BF: MYC2; MYC3; MYC4 Motifs on "-" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 103 AACGTG 98 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 14 ACACGTGG 21 (Mism.= 1) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00713 Up.Conf.Int. 1 Found 1 14 ACACGTGg 21 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00713 Up.Conf.Int. 1 Found 1 21 cCACGTGT 14 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00476 Up.Conf.Int. 1 Found 1 22 cCCACGTGTa 13 (Mism.= 2) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 97 CCACGT 102 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 97 CCACGT 102 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 13 tACACGTGGg 22 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 13 TACACGTGgg 22 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00658 Up.Conf.Int. 1 Found 1 13 tACACGTGGg 22 (Mism.= 2) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 102 ACGTGG 97 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "-" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 102 ACGTGGC 96 (Mism.= 0) TFBS AC: RSP02842//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HY5/TFBS: T/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00829 Up.Conf.Int. 1 Found 1 98 CACGTT 103 (Mism.= 0) TFBS AC: RSP02888//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/GATA/MADS/3RMYB/NAC BS /BF: bHLH, GATA, MADS, 3RMYB, NAC Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 103 AACGTGGc 96 (Mism.= 1) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 96 GCCACGTtAGt 106 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00476 Up.Conf.Int. 1 Found 1 13 tACACGTGGg 22 (Mism.= 2) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00625 Up.Conf.Int. 1 Found 1 105 CtAACGTGgC 96 (Mism.= 2) TFBS AC: RSP02913//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00625 Up.Conf.Int. 1 Found 1 96 GcCACGTTAg 105 (Mism.= 2) TFBS AC: RSP02931//OS: maize (Zea mays) /GENE: GRMZM2G091201/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 104 TaaCGTGGCA 95 (Mism.= 2) TFBS AC: RSP02933//OS: maize (Zea mays) /GENE: GRMZM2G086294/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00515 Up.Conf.Int. 1 Found 1 104 TaACGTGG 97 (Mism.= 1) Totally 56 motifs of 55 different TFBSs have been found ____________________________________________________________ >PLPR0478..AC:M28156.1..OS:Oryza sativa (japonica cultivar-group) Gt1..PROD:glutelin 1..[ -200: +51] ..CDS: +40..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.12 T - 0.30 C - 0.23 TFBS AC: RSP00041//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (P) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 127 tAACAAACTcTATC 140 (Mism.= 2) TFBS AC: RSP00192//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: AACA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00427 Up.Conf.Int. 1 Found 1 127 TAACAAACTCTA 138 (Mism.= 0) TFBS AC: RSP00195//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 77 TtCGTGTACCA 87 (Mism.= 1) TFBS AC: RSP00196//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00469 Up.Conf.Int. 1 Found 1 75 CTTTcGTGTACCacA 89 (Mism.= 3) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00909 Up.Conf.Int. 1 Found 1 175 TAAATGCA 182 (Mism.= 0) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 75 CTTTCGTGTACCACA 89 (Mism.= 0) TFBS AC: RSP00692//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 24 ACAATGCTGCGTCAATTA 41 (Mism.= 0) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 128 AACAAACTCTATC 140 (Mism.= 0) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 4 AGAAAGAGA 12 (Mism.= 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 8 AGAGAGaAA 16 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 2 4 AGAaAGAGA 12 (Mism.= 1) 8 AGAGAGAaA 16 (Mism.= 1) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 203 AGAAACAA 196 (Mism.= 0) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 128 AACAAACTCTATC 140 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 3 aAGAaAGAGAGAaAGAA 19 (Mism.= 3) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00694 Up.Conf.Int. 1 Found 1 78 TCGTGTAC 85 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 2 19 tTCTtTCTCTCTtTCT 4 (Mism.= 3) 17 CTtTCTCTCTtTCTtT 2 (Mism.= 3) TFBS AC: RSP02992//OS: Brassica juncea /GENE: BjCHI1/TFBS: WBl-4 /BF: BjMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 114 GaAGTGACTCtT 103 (Mism.= 2) Totally 19 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0479..AC:L36819.1..OS:Oryza sativa (japonica cultivar-group) Gt2..PROD:glutelin..[ -200: +51] ..CDS: +39..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.11 T - 0.29 C - 0.23 TFBS AC: RSP00041//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (P) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 127 tAACAAACTcTATC 140 (Mism.= 2) TFBS AC: RSP00190//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: GCN4 box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 104 TGAGTCA 110 (Mism.= 0) TFBS AC: RSP00192//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: AACA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 127 TAACAAACTCTA 138 (Mism.= 0) TFBS AC: RSP00193//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 98 ATATCATGAGTCACTTCA 115 (Mism.= 0) TFBS AC: RSP00194//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 97 TATaTcaTGAGTCACTTCA 115 (Mism.= 3) TFBS AC: RSP00195//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 79 TCCGTGTACCA 89 (Mism.= 0) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 175 TAAATGCA 182 (Mism.= 0) TFBS AC: RSP00666//OS: rice (Oryza sativa), Oryza sativa /GENE: GluB-1/TFBS: GCN4 motif /BF: RISBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 104 TGAGTCA 110 (Mism.= 0) TFBS AC: RSP00690//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 98 ATATCATGAGTCACTTCA 115 (Mism.= 0) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00336 Up.Conf.Int. 1 Found 1 77 CTTcCGTGTACCACA 91 (Mism.= 1) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00848 Up.Conf.Int. 1 Found 1 128 AACAAACTCTATC 140 (Mism.= 0) TFBS AC: RSP00696//OS: Brassica oleracea /GENE: SLG13/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 181 cACAATGATtTAG 193 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 15 AGAAAGAGA 23 (Mism.= 0) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 19 AGAGAGaAA 27 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 2 15 AGAaAGAGA 23 (Mism.= 1) 19 AGAGAGAaA 27 (Mism.= 1) TFBS AC: RSP00959//OS: barley (Hordeum vulgare) /GENE: Hor2/TFBS: GLM2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 104 TGAGTCA 110 (Mism.= 0) TFBS AC: RSP00961//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: PB1 /BF: BPBF Motifs on "+" Strand: Mean Exp. Number 0.00368 Up.Conf.Int. 1 Found 1 9 TGCAAAAG 16 (Mism.= 0) TFBS AC: RSP01017//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00381 Up.Conf.Int. 1 Found 1 203 AGAAACAA 196 (Mism.= 0) TFBS AC: RSP01061//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCN4 motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00816 Up.Conf.Int. 1 Found 1 103 aTGAGTCAC 111 (Mism.= 1) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 128 AACAAACTCTATC 140 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00004 Up.Conf.Int. 1 Found 1 14 aAGAaAGAGAGAaAGAA 30 (Mism.= 3) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 159 TCATGCATtT 150 (Mism.= 1) TFBS AC: RSP02188//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp31/VI /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00890 Up.Conf.Int. 1 Found 1 52 AaTTGACACAt 42 (Mism.= 2) TFBS AC: RSP02280//OS: rice (Oryza sativa) /GENE: OsLKR/SDH/TFBS: GSN4 box /BF: RISBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 110 TGACTCA 104 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00011 Up.Conf.Int. 1 Found 2 30 tTCTtTCTCTCTtTCT 15 (Mism.= 3) 28 CTtTCTCTCTtTCTtT 13 (Mism.= 3) TFBS AC: RSP02992//OS: Brassica juncea /GENE: BjCHI1/TFBS: WBl-4 /BF: BjMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 114 GaAGTGACTCAT 103 (Mism.= 1) Totally 28 motifs of 26 different TFBSs have been found ____________________________________________________________ >PLPR0480..AC:X05823..OS:Triticum aestivum..GENE: cab-1..PROD:chlorophyll a/b-binding protein..[ -200: +51] ..CDS: +21 f |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.13 T - 0.26 C - 0.33 TFBS AC: RSP00304//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: KN1/KIP BS /BF: KN1/KIP Motifs on "-" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 117 TGACAGCT 110 (Mism.= 0) TFBS AC: RSP00362//OS: wheat (Triticum aestivum) /GENE: Cab/TFBS: Cab1-A /BF: HvMCB1; HvMCB2 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 21 GCCACAAGTACATCTCATCCAtTTaAgG 48 (Mism.= 3) TFBS AC: RSP00439//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: -624-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00802 Up.Conf.Int. 1 Found 1 144 ATATTCTT 151 (Mism.= 0) TFBS AC: RSP00713//OS: barley (Hordeum vulgare) /GENE: HvLTP2/TFBS: MYC RS /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 114 CAGCTGA 108 (Mism.= 0) TFBS AC: RSP01369//OS: wheat (Triticum aestivum) /GENE: cab-1/TFBS: cab-CMA5 [Footprinting A" motif - G-box-like motif] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 27 AGTACATCTCATCCATTT 44 --12-- 57 TGCACCAATGGCA 69 (Mism.= 0/ 0) TFBS AC: RSP01369//OS: wheat (Triticum aestivum) /GENE: cab-1/TFBS: cab-CMA5 [G-box-like motif - LS7-like motif] /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 57 TGCACCAATGGCA 69 -- 6-- 76 CTGCAGATTTCT 87 (Mism.= 0/ 0) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00448 Up.Conf.Int. 1 Found 1 39 CCATTTAAGG 48 (Mism.= 0) TFBS AC: RSP02197//OS: tomato (Lycopersicon esculentum) /GENE: LeEXP1/TFBS: CArG (LeEXP1) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00649 Up.Conf.Int. 1 Found 1 181 CTATTTAAAG 172 (Mism.= 1) TFBS AC: RSP02548//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YAB3/TFBS: WUS BS (AS2) /BF: WUS Motifs on "-" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 137 ATTAATTG 130 (Mism.= 0) TFBS AC: RSP02707//OS: rice blast fungus (Magnaporthe oryzae) /GENE: COS1-dependent genes/TFBS: A4GA3-motif /BF: COS1 Motifs on "-" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 90 AAAAGAAA 83 (Mism.= 0) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 181 CTATTTAAAG 172 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0481..AC:X62799.1..OS:Glycine max..GENE:hsp70..PROD:heat shock 70 kDa protein..[ -200: +51] ..CDS: +106..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.11 T - 0.33 C - 0.27 TFBS AC: RSP00356//OS: tobacco (Nicotiana tabacum) /GENE: EAS4/TFBS: TAC box /BF: TacBBF (TAC box binding factor) Motifs on "+" Strand: Mean Exp. Number 0.00239 Up.Conf.Int. 1 Found 1 233 ACTCTACAaaACTC 246 (Mism.= 2) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00856 Up.Conf.Int. 1 Found 1 61 CAGAATAA 54 (Mism.= 0) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 71 AGAAAGAAA 63 (Mism.= 0) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00550 Up.Conf.Int. 1 Found 2 198 AGAGAGAGA 190 (Mism.= 0) 196 AGAGAGAGA 188 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 200 GGAGAGAGA 192 (Mism.= 0) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 12 GTTGACTTTA 3 (Mism.= 1) TFBS AC: RSP01084//OS: sunflower (Helianthus annuus) /GENE: sHSP/TFBS: DRE1 /BF: HaDREB2 Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 181 ACCGCAATT 173 (Mism.= 1) TFBS AC: RSP01219//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: TT box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00871 Up.Conf.Int. 1 Found 1 175 TTGCGGTTT 183 (Mism.= 1) TFBS AC: RSP01733//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM2 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 166 CCGCGT 161 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 177 CAATTTATAG 168 (Mism.= 1) TFBS AC: RSP02211//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: P1BS (NtPT3) /BF: PHR1 (P1) Motifs on "-" Strand: Mean Exp. Number 0.00734 Up.Conf.Int. 1 Found 1 139 GAATATAC 132 (Mism.= 0) TFBS AC: RSP02409//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS2 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 1 33 CACTTTA 27 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 200 GGAGAGAGAG 191 (Mism.= 0) TFBS AC: RSP02870//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtJIN1/TFBS: AtCAMTA3 BS /BF: AtCAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 166 CCGCGT 161 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 168 CTATAAATTG 177 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 1 177 CAATTTATAG 168 (Mism.= 1) Totally 17 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0482..AC:X71020.1..OS:Nicotiana tabacum..GENE:Npg1..PROD:polygalacturonase..[ -200: +51] ..CDS: +81..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.33 C - 0.17 TFBS AC: RSP00628//OS: arabidopsis (Arabidopsis thaliana) /GENE: Lhcb1*3/TFBS: CCA1 BS1 /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 16 AACAATCT 9 (Mism.= 0) TFBS AC: RSP01139//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00852 Up.Conf.Int. 1 Found 1 33 cCGTGGTTT 41 (Mism.= 1) TFBS AC: RSP01252//OS: carrot (Daucus carota) /GENE: Synthetic oligonucleotides/TFBS: DcE2F BS /BF: DcE2F Motifs on "+" Strand: Mean Exp. Number 0.00088 Up.Conf.Int. 1 Found 1 28 TTTcCCCGtGgTTTT 42 (Mism.= 3) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 215 TTTCAAAG 208 (Mism.= 0) TFBS AC: RSP02236//OS: rice (Oryza sativa) /GENE: Synthetic oligonucleotides/TFBS: obs1 /BF: OsEIL1; OsEIL2 Motifs on "-" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 134 AACttTGTACCTGtTC 119 (Mism.= 3) TFBS AC: RSP02523//OS: rice (Oryza sativa, japonica) /GENE: Cytochrome P450 71D10/TFBS: DBS /BF: DST Motifs on "-" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 14 CAATCTGTACCA 3 (Mism.= 2) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "+" Strand: Mean Exp. Number 0.00112 Up.Conf.Int. 1 Found 1 27 CTTTCCCC 34 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0483..AC:U26944.1..OS:Arabidopsis thaliana..GENE:sen1..PROD:senescence-associated protein..[ -200: +51] ..CDS: +52..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16 TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 147 ATACCttTGTGT 158 (Mism.= 2) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00315 Up.Conf.Int. 1 Found 1 132 GCTGACGTGA 141 (Mism.= 1) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 132 GCTGACGTGA 141 (Mism.= 1) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 61 CCAAAATGT 53 (Mism.= 0) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 233 TTTCAAAG 240 (Mism.= 0) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 133 CTGACGTGag 142 (Mism.= 2) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 142 ctCACGTCAGC 132 (Mism.= 2) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0484..AC:X76933.1..OS:Hordeum vulgare..GENE:LEA B19.1..PROD:late embryogenic abundant protein B19.1..[ -200: +51] ..CDS: +90..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.25 T - 0.16 C - 0.39 TFBS AC: RSP00004//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif g /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 175 TTTATA 170 (Mism.= 0) TFBS AC: RSP00147//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 170 TATAAA 175 (Mism.= 0) TFBS AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/TFBS: S1, consensus /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 58 GTTTCCATG 66 (Mism.= 0) TFBS AC: RSP00970//OS: soybean (Glycine max) /GENE: Auxin-regulated genes/TFBS: CRE (G/A) /BF: STF1; STF2; STGA1; Motifs on "+" Strand: Mean Exp. Number 0.00575 Up.Conf.Int. 1 Found 1 148 GTGACGCAc 156 (Mism.= 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00429 Up.Conf.Int. 1 Found 1 169 CTATAAAaA 177 (Mism.= 1) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 72 TCgCATGTGT 81 (Mism.= 1) TFBS AC: RSP01927//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: GC-rich element 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 41 CGCGCGTGCG 50 (Mism.= 0) TFBS AC: RSP02143//OS: sugar beet (Beta vulgaris) /GENE: BvNHX1/TFBS: MYB 1AT BS /BF: MYB 1AT Motifs on "+" Strand: Mean Exp. Number 0.00882 Up.Conf.Int. 1 Found 1 27 ATAACCA 33 (Mism.= 0) TFBS AC: RSP02192//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00145 Up.Conf.Int. 1 Found 1 169 CTAtAAAAAG 178 (Mism.= 1) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 70 gCtCGCATGTG 80 (Mism.= 2) TFBS AC: RSP02712//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 4 /BF: DOF2 Motifs on "+" Strand: Mean Exp. Number 0.00201 Up.Conf.Int. 1 Found 1 86 TCCAAgAGCCT 96 (Mism.= 1) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 170 TATAAAAA 177 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 178 CTtTTTATAG 169 (Mism.= 1) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0485..AC:X77157.1..OS:Hordeum vulgare (cv. Bomi)..GENE:LEA B19.1b..PROD:late embryogenic abundant protein B19.1b..[ -200: +51] ..CDS: +116..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.21 G - 0.25 T - 0.17 C - 0.37 TFBS AC: RSP00003//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CArG1 (AGL3) /BF: AGL3; MADS-box containing positively transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 179 CCTTTTATAG 170 (Mism.= 0) TFBS AC: RSP00054//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: C2a-BS /BF: root-sprcific nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 36 GCTTATC 30 (Mism.= 0) TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00294 Up.Conf.Int. 1 Found 1 153 ACGCGCCTCCTC 164 (Mism.= 0) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "+" Strand: Mean Exp. Number 0.00207 Up.Conf.Int. 1 Found 1 44 GACgTGTCAT 53 (Mism.= 1) TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 189 GCgACGTCGCcC 178 (Mism.= 2) TFBS AC: RSP01710//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC “Intermediate” /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00264 Up.Conf.Int. 1 Found 1 179 CCTTTTATAG 170 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 179 CCtTTTATAG 170 (Mism.= 1) TFBS AC: RSP02698//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: I box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00627 Up.Conf.Int. 1 Found 1 28 CGGATAAGcA 37 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 170 CTATAAAAGG 179 (Mism.= 1) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0486..AC:X81087.1..OS:Hordeum vulgare (cv. Bomi)..GENE:LEA B19.3..PROD:late embryogenic abundant protein B19.3..[ -200: +51] ..CDS: +98..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.23 T - 0.18 C - 0.34 TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 1 & box 2) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00111 Up.Conf.Int. 1 Found 1 42 CATGCA 47 -- 6-- 54 CACGTG 59 (Mism.= 0/ 0) TFBS AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00671 Up.Conf.Int. 1 Found 1 82 CATGCAA 76 (Mism.= 0) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 176 TTATATA 170 (Mism.= 0) TFBS AC: RSP00150//OS: maize (Zea mays) /GENE: C1/TFBS: ABRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 56 CGTGTCGTCCAacCAg 71 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 91 CGTGTCGTgCATGCAa 76 (Mism.= 2) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 61 GACACGTGGt 52 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 62 cGACACGTGGtA 51 (Mism.= 2) TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "+" Strand: Mean Exp. Number 0.00584 Up.Conf.Int. 1 Found 1 89 ACGTCtTAGA 98 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00848 Up.Conf.Int. 1 Found 1 52 aCCACGTGTC 61 (Mism.= 1) TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 188 GCgACGTCGCGt 177 (Mism.= 2) TFBS AC: RSP00819//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: ACE-core (AtF3H) /BF: ACE-binding factor Motifs on "+" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 86 GaCACGTCTT 95 (Mism.= 1) TFBS AC: RSP00887//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (1) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00817 Up.Conf.Int. 1 Found 1 103 AAGAgTCTA 95 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 51 TaCCACGTGTCg 62 (Mism.= 2) TFBS AC: RSP00939//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 33 TtCGGTGCcCAT 44 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 52 aCCACGTGTC 61 (Mism.= 1) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "-" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 1 93 gACGTG 88 -- 5-- 82 CATGCA 77 (Mism.= 1/ 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 61 GACACGTGGt 52 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 60 ACACGTGG 53 (Mism.= 0) TFBS AC: RSP01721//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA8 (At2g22670)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00501 Up.Conf.Int. 1 Found 1 62 CGAcACGTGGTa 51 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 52 aCCACGTGTC 61 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 62 cGACACGTGGtA 51 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 52 ACCACGTGTC 61 (Mism.= 0) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 61 GACACGTG 54 (Mism.= 0) TFBS AC: RSP02141//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE1 /BF: DREB2C Motifs on "+" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 161 cTTGTCGGcT 170 (Mism.= 2) TFBS AC: RSP02235//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY-RY /BF: LEC2 Motifs on "-" Strand: Mean Exp. Number 0.00022 Up.Conf.Int. 1 Found 1 84 TGCATG 79 --31-- 47 TGCATG 42 (Mism.= 0/ 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 61 GACACGTGGT 52 (Mism.= 1) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 61 GACACGTGGT 52 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 61 GACACGTGgT 52 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 61 GACACGTGGT 52 (Mism.= 1) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00567 Up.Conf.Int. 1 Found 1 59 CACGTGGT 52 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 54 CACGTGTC 61 (Mism.= 0) TFBS AC: RSP02950//OS: maize (Zea mays) /GENE: MCM3/TFBS: E2F1 BS/1 /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 144 AGCGCGCcAA 153 (Mism.= 1) Totally 32 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0487..AC:X81088.1..OS:Hordeum vulgare (cv. Bomi)..GENE:LEA B19.4..PROD:late embryogenic abundant protein B19.4..[ -200: +51] ..CDS: +98..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.17 C - 0.35 TFBS AC: RSP00048//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: ABRE A2; ABRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00925 Up.Conf.Int. 1 Found 1 33 CCTACaTGtCGG 44 (Mism.= 2) TFBS AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00524 Up.Conf.Int. 1 Found 1 89 CATGCAA 83 (Mism.= 0) TFBS AC: RSP00146//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: TATA1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00554 Up.Conf.Int. 1 Found 1 176 TTATATA 170 (Mism.= 0) TFBS AC: RSP00150//OS: maize (Zea mays) /GENE: C1/TFBS: ABRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 98 CGcGTCGTgCATGCAa 83 (Mism.= 3) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 1 69 TGACAtGTGGtA 58 (Mism.= 2) TFBS AC: RSP00460//OS: coix /GENE: alpha-coixin/TFBS: O2d /BF: O2 Motifs on "+" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 61 cACATGTCAT 70 (Mism.= 1) TFBS AC: RSP00759//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif D /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00554 Up.Conf.Int. 1 Found 1 177 ATTATAT 171 (Mism.= 0) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 71 GATGACATGT 62 (Mism.= 1) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00903 Up.Conf.Int. 1 Found 1 58 TaCCACaTGTCA 69 (Mism.= 2) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00671 Up.Conf.Int. 1 Found 1 71 GATGACATGT 62 (Mism.= 1) TFBS AC: RSP01009//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: DREB1A/DREB2A BS /BF: DREB1A; DREB2A Motifs on "-" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 46 cACCGACAT 38 (Mism.= 1) TFBS AC: RSP01610//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: DRE /BF: DREB2C Motifs on "-" Strand: Mean Exp. Number 0.00474 Up.Conf.Int. 1 Found 1 46 cACCGACAT 38 (Mism.= 1) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "+" Strand: Mean Exp. Number 0.00838 Up.Conf.Int. 1 Found 1 29 AAACCCTA 36 (Mism.= 0) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 124 CTCTCCAT 117 (Mism.= 0) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 179 AgATTATATA 170 (Mism.= 1) TFBS AC: RSP02142//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HsfA3/TFBS: DRE2 /BF: DREB2C Motifs on "+" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 37 cATGTCGGTg 46 (Mism.= 2) TFBS AC: RSP02235//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY-RY /BF: LEC2 Motifs on "-" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 91 TGCATG 86 --31-- 54 TGCATG 49 (Mism.= 0/ 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00838 Up.Conf.Int. 1 Found 1 36 TAGGGTTT 29 (Mism.= 0) TFBS AC: RSP02677//OS: wild tomato (Solanum habrochaites) /GENE: Synthetic oligonucleotides/TFBS: CRT/DRE /BF: ShCBF1 Motifs on "-" Strand: Mean Exp. Number 0.00614 Up.Conf.Int. 1 Found 1 46 cACCGACAT 38 (Mism.= 1) TFBS AC: RSP02712//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 4 /BF: DOF2 Motifs on "+" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 25 TCCAAAAcCCT 35 (Mism.= 1) TFBS AC: RSP02920//OS: Medicago truncatula /GENE: CYP93E2/TFBS: N-box /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00923 Up.Conf.Int. 1 Found 1 226 ACCACGAGcA 235 (Mism.= 1) Totally 21 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0488..AC:U46545.1..OS:Helianthus annuus..GENE:hsp17.7 G4..PROD:17.7 kDa heat-shock protein gene..[ -200: +51] ..CDS: +79..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.09 T - 0.26 C - 0.31 TFBS AC: RSP00833//OS: sunflower /GENE: Ha hsp17.7 G4/TFBS: HSE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 112 TTCTTCAAGCTTCAAGACAATCCTAGAAATTAC 144 (Mism.= 0) TFBS AC: RSP00834//OS: sunflower /GENE: Ha hsp17.7 G4/TFBS: HSE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 80 CTCTGGAACCTTTCAGAAATATC 102 (Mism.= 0) TFBS AC: RSP01243//OS: sunflower (Helianthus annuus) /GENE: Hahsp17.7G4/TFBS: HSE II /BF: HaHSFA9 Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 80 CTCTGGAACCTTTCAGAAATATC 102 (Mism.= 0) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 44 ATACGTGT 37 (Mism.= 0) TFBS AC: RSP01702//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00708 Up.Conf.Int. 1 Found 1 36 AACACGTATa 45 (Mism.= 1) TFBS AC: RSP01715//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF6 (At1g30330)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00844 Up.Conf.Int. 1 Found 1 35 tAACACGTATAT 46 (Mism.= 1) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 46 aTAtACGTGTTA 35 (Mism.= 2) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00709 Up.Conf.Int. 1 Found 1 35 TaACACGTATAt 46 (Mism.= 2) TFBS AC: RSP02101//OS: maize (Zea mays) /GENE: A1/TFBS: P (-118) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 127 CTTGAAGCTT 118 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0489..AC:U46544.1..OS:Helianthus annuus..GENE:hsp18.6 G2..PROD:18.6 kDa heat-shock protein gene..[ -200: +51] ..CDS: +64..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.10 T - 0.25 C - 0.27 TFBS AC: RSP00145//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: SEF3 BS 2 /BF: SEF3 Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 43 AACCCA 38 (Mism.= 0) TFBS AC: RSP00295//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CC", comp) /BF: At-TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 12 TGGGCT 17 --13-- 31 aGCCCA 36 (Mism.= 1/ 1) Motifs on "-" Strand: Mean Exp. Number 0.00030 Up.Conf.Int. 1 Found 1 36 TGGGCT 31 --13-- 17 aGCCCA 12 (Mism.= 1/ 1) TFBS AC: RSP00296//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CT", comp) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 12 TGGGCT 17 --13-- 31 AGCCCA 36 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00028 Up.Conf.Int. 1 Found 1 36 TGGGCT 31 --13-- 17 AGCCCA 12 (Mism.= 0/ 0) TFBS AC: RSP00297//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II/telo-box (motifs 1 & 2) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00014 Up.Conf.Int. 1 Found 1 12 TGGGCT 17 --13-- 31 aGCCCA 36 (Mism.= 1/ 1) Motifs on "-" Strand: Mean Exp. Number 0.00030 Up.Conf.Int. 1 Found 1 36 TGGGCT 31 --13-- 17 aGCCCA 12 (Mism.= 1/ 1) TFBS AC: RSP00338//OS: soybean (Glycine max) /GENE: beta-conglicinin alpha'/TFBS: SEF3 BS /BF: SEF3 Motifs on "-" Strand: Mean Exp. Number 0.00366 Up.Conf.Int. 1 Found 1 43 AACCCA 38 (Mism.= 0) TFBS AC: RSP00698//OS: Brassica oleracea /GENE: SLG13/TFBS: Box III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00478 Up.Conf.Int. 1 Found 1 231 TGAAgTAATCG 221 (Mism.= 1) TFBS AC: RSP01000//OS: Agrobacterium tumefaciens /GENE: T-cyt/TFBS: 3'-III element /BF: CBF Motifs on "-" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 18 AaGCCCaACA 9 (Mism.= 2) TFBS AC: RSP01078//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L0 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 128 ATAACCATCCAg 139 (Mism.= 1) TFBS AC: RSP01833//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-2 (At4g10040)/TFBS: Site II element /BF: AREB2/ABF4; GBF3; GBF-like protein; bHLH080;AtTCP20 Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 17 AGCCCA 12 (Mism.= 0) TFBS AC: RSP01834//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: Site II element /BF: TCP domain protein Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 12 TGGGCT 17 (Mism.= 0) TFBS AC: RSP02114//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: HSE3 /BF: unknown HSF(s) Motifs on "+" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 92 AGAAtAtTCCAGAAa 106 (Mism.= 3) TFBS AC: RSP02283//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-150) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 17 AGCCCA 12 (Mism.= 0) TFBS AC: RSP02515//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-1 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "+" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 137 CaGAACaTTCAA 148 (Mism.= 2) TFBS AC: RSP02533//OS: rice (Oryza sativa, japonica) /GENE: Synthetic oligonucleotides/TFBS: TGGGCC/T-motif /BF: OsTB1 Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 12 TGGGCT 17 (Mism.= 0) TFBS AC: RSP02534//OS: rice (Oryza sativa, japonica) /GENE: Synthetic oligonucleotides/TFBS: TGGGCC/T-motif /BF: [IPA1 + PCF1 + PCF2] Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 12 TGGGCT 17 (Mism.= 0) TFBS AC: RSP02666//OS: Oryza sativa /GENE: ClpB-cyt/Hsp100/TFBS: HSE /BF: OsHsfA2c; OsHsfB4b Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 93 GAATATTC 100 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 100 GAATATTC 93 (Mism.= 0) TFBS AC: RSP02860//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 17 AGCCCA 12 (Mism.= 0) Totally 21 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0490..AC:L44583.1..OS:Arabidopsis thaliana..GENE:AVA-P3..PROD:vacuolar H+-pumping ATPase 16 kDa proteolipid..[ -200: +51] ..CDS: +152..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.23 T - 0.30 C - 0.20 TFBS AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: ACGT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00339 Up.Conf.Int. 1 Found 1 187 CACACGTC 180 (Mism.= 0) TFBS AC: RSP00508//OS: soybean (Glycine max) /GENE: beta-conglicinin alfa'/TFBS: SEF4 BS /BF: SEF4 Motifs on "-" Strand: Mean Exp. Number 0.00505 Up.Conf.Int. 1 Found 1 31 GCATTTTTAcgA 20 (Mism.= 2) TFBS AC: RSP00832//OS: tobacco (Nicotiana sylvestris) /GENE: psaDb/TFBS: LRE (repressor) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 1 199 GTAGTaGTAGTATATctCAt 218 (Mism.= 4) TFBS AC: RSP00941//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3.6/TFBS: box I /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00580 Up.Conf.Int. 1 Found 1 45 TTTCAATC 52 (Mism.= 0) TFBS AC: RSP01594//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00580 Up.Conf.Int. 1 Found 1 52 GATTGAAA 45 (Mism.= 0) TFBS AC: RSP01703//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT2/DRE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 178 CCGACGTGTG 187 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00253 Up.Conf.Int. 1 Found 1 187 CACACGTcGG 178 (Mism.= 1) TFBS AC: RSP02190//OS: tomato (Lycopersicon esculentum) /GENE: LeACS4/TFBS: CArG (LeACS4-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00816 Up.Conf.Int. 1 Found 1 57 CAAATATAAG 66 (Mism.= 0) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 113 CGGCCCA 107 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0491..AC:U23482.1..OS:Arabidopsis thaliana..GENE:ASC4..PROD:1-aminocyclopropane-1-carboxylate synthase..[ -200: +51] ..CDS: +125..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.29 C - 0.20 TFBS AC: RSP00140//OS: pea,Pisum sativum /GENE: rbcS-3.6/TFBS: AT-1 (2) /BF: AT-1 Motifs on "-" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 63 AtTTATTTTTATT 51 (Mism.= 1) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 75 TTTGtTTTaGTGATTT 60 (Mism.= 2) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00845 Up.Conf.Int. 1 Found 1 236 tGAGAGAGA 228 (Mism.= 1) TFBS AC: RSP01114//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 152 CCAAAAT 146 (Mism.= 0) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00944 Up.Conf.Int. 1 Found 1 104 TACCAACA 97 (Mism.= 1) TFBS AC: RSP02931//OS: maize (Zea mays) /GENE: GRMZM2G091201/TFBS: O2 BS /BF: Opaque2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00936 Up.Conf.Int. 1 Found 1 150 TGGCGTaGCA 159 (Mism.= 1) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0492..AC:Z95153.2..OS:Helianthus annuus..GENE:hsp17.6 G1..PROD:17.6 kDa class I small heat-shock protein HSP17.6..[ -200: +51] ..CDS: +35..TSS:201 (+1) # Alternative TSS(s): -8 |Taxon: Dicot |P Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.42 G - 0.07 T - 0.25 C - 0.25 TFBS AC: RSP00011//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: C2b-BS /BF: root-sprcific nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 77 GCTTATTCTC 86 (Mism.= 1) TFBS AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: vicilin box /BF: ROM1, ROM2 Motifs on "+" Strand: Mean Exp. Number 0.00188 Up.Conf.Int. 1 Found 1 149 GCCACCTC 156 (Mism.= 0) TFBS AC: RSP00210//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,B /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00265 Up.Conf.Int. 1 Found 1 149 GCCACCTCAaCa 160 (Mism.= 2) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00376 Up.Conf.Int. 1 Found 1 170 TATAAATACCAc 181 (Mism.= 1) TFBS AC: RSP00850//OS: maize (Zea mays) /GENE: H4C7/TFBS: CAT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00148 Up.Conf.Int. 1 Found 1 134 GCCAAC 129 (Mism.= 0) TFBS AC: RSP01290//OS: sunflower (Helianthus annuus) /GENE: Ha hsp17.6 G1/TFBS: HSE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 96 AGATAAGTACAGAATATTTCAGAAC 120 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00339 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00339 Up.Conf.Int. 1 Found 1 169 CTATAAATAC 178 (Mism.= 0) TFBS AC: RSP02217//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: ACE2 (FHY1) /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 132 CAACGTAG 125 (Mism.= 0) TFBS AC: RSP02618//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE1 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00518 Up.Conf.Int. 1 Found 1 126 TACGTTGG 133 (Mism.= 0) TFBS AC: RSP02698//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: I box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00796 Up.Conf.Int. 1 Found 1 95 CaGATAAGtA 104 (Mism.= 2) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 149 GCCACcTCAaC 159 (Mism.= 2) TFBS AC: RSP02918//OS: pear (Pyrus bretschneideri) /GENE: PbUFGT1/TFBS: PbMYB10/PbMYB9 BS /BF: PbMYB10; PbMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 129 GTTGGC 134 (Mism.= 1) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0493..AC:X12737.1..OS:Nicotiana tabacum cv. Xanthi-nc..GENE:PR-1a..PROD:pathogenesis-related protein 1a..[ -200: +51] ..CDS: +29..TSS:201 (+1) # Alternative TSS(s): -2 -1 |Taxon: Dicot |Promote Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.35 C - 0.16 TFBS AC: RSP00750//OS: Catharanthus roseus /GENE: STR/TFBS: BN rev /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00980 Up.Conf.Int. 1 Found 1 22 TTgTTGTAAAAT 11 (Mism.= 1) TFBS AC: RSP01057//OS: arabidopsis (Arabidopsis thaliana) /GENE: rbcS-1a/TFBS: GT-3a Box III /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 33 GCaGTTACCAA 23 (Mism.= 1) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00163 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00163 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01437//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: GATA /BF: R-GATA Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 63 AATAGGATA 71 (Mism.= 0) TFBS AC: RSP01968//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 65 TAGGATAAA 73 (Mism.= 0) TFBS AC: RSP02468//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: AAAT-region /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00821 Up.Conf.Int. 1 Found 1 238 AAATCCC 232 (Mism.= 0) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0494..AC:X83076.1..OS:Zea mays..GENE:Fer1..PROD:ferritin..[ -200: +51] ..CDS: +106..TSS:201 (+1) # Alternative TSS(s): +6 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.24 G - 0.13 T - 0.22 C - 0.42 TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 147 GACACGTgGA 138 (Mism.= 1) TFBS AC: RSP00188//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 138 TCcACGTGTC 147 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 147 GACACGTGGa 138 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 138 TCCACGTGTC 147 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 146 ACACGTG 140 (Mism.= 0) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 147 GaCACGTGGA 138 (Mism.= 1) TFBS AC: RSP00728//OS: tobacco (Nicotiana tabacum) /GENE: ZmFer1/TFBS: IDRS /BF: unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00009 Up.Conf.Int. 1 Found 1 90 GCCACGAGCCCTCCAC 105 (Mism.= 0) TFBS AC: RSP00729//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtFer1/TFBS: IDRS /BF: unknown transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 92 CACGAGCCCTCCAC 105 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 138 TCCACGTGTC 147 (Mism.= 0) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 147 gACACGTGgA 138 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 147 gACACGTGgA 138 (Mism.= 2) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 141 ACGTGTC 147 (Mism.= 0) TFBS AC: RSP01057//OS: arabidopsis (Arabidopsis thaliana) /GENE: rbcS-1a/TFBS: GT-3a Box III /BF: GT-3a Motifs on "-" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 17 GCCGTTACtAc 7 (Mism.= 2) TFBS AC: RSP01069//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: GH3/TFBS: D1 /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 139 CCaCGTGTCTC 149 (Mism.= 1) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 212 TCCAtCCATCCA 223 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00359 Up.Conf.Int. 1 Found 1 147 GACACGTGGA 138 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 146 ACACGTGG 139 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00841 Up.Conf.Int. 1 Found 1 138 TCCACGTgTC 147 (Mism.= 1) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00425 Up.Conf.Int. 1 Found 1 137 gTCCACGTGTCT 148 (Mism.= 1) TFBS AC: RSP01723//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: C/G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 137 GTCCACGTgTcT 148 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00243 Up.Conf.Int. 1 Found 1 138 tCCACGTGTC 147 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 138 tcCACGTGTC 147 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00907 Up.Conf.Int. 1 Found 1 147 GACACGTGga 138 (Mism.= 2) TFBS AC: RSP01956//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MT2B/TFBS: A-region /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00026 Up.Conf.Int. 1 Found 1 152 TtGgaGACACGTGGA 138 (Mism.= 3) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00338 Up.Conf.Int. 1 Found 1 138 tCCACGTGTC 147 (Mism.= 1) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 147 gACACGTGgA 138 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 147 GACACGTG 140 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00243 Up.Conf.Int. 1 Found 1 138 TCCACGTGtC 147 (Mism.= 1) TFBS AC: RSP02084//OS: oomycete, Phytophthora infestans /GENE: Pks1/TFBS: CATTTGTTTT motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00436 Up.Conf.Int. 1 Found 1 47 CATTTtTTTT 38 (Mism.= 1) TFBS AC: RSP02287//OS: pea (Pisum sativum) /GENE: TRX f/TFBS: EE (TRX f) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00581 Up.Conf.Int. 1 Found 1 74 GAGATATT 67 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 138 tCCACGTGTc 147 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 147 GACACGTGGA 138 (Mism.= 0) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00935 Up.Conf.Int. 1 Found 1 139 cCACGTGTcT 148 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 138 TcCACGTGTc 147 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 147 GACACGTGGA 138 (Mism.= 0) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 147 GACACGTGGA 138 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 140 CACGTGTC 147 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 141 ACGTGTC 147 (Mism.= 0) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00582 Up.Conf.Int. 1 Found 1 65 gAAATATCT 73 (Mism.= 1) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 73 AGATATTTC 65 (Mism.= 1) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 73 AGATATTTC 65 (Mism.= 1) TFBS AC: RSP02841//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HY5/TFBS: ACG-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00857 Up.Conf.Int. 1 Found 1 11 TAACGGC 17 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 147 GACACGTGga 138 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00869 Up.Conf.Int. 1 Found 1 147 gACACGTGGa 138 (Mism.= 2) Totally 44 motifs of 43 different TFBSs have been found ____________________________________________________________ >PLPR0495..AC:X83077.1..OS:Zea mays..GENE:Fer2..PROD:ferritin..[ -200: +51] ..CDS: +109..TSS:201 (+1) # Alternative TSS(s): +6 |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.19 G - 0.17 T - 0.20 C - 0.44 TFBS AC: RSP00018//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF4 /BF: SEF4, soybean Embryo Factor 4 Motifs on "-" Strand: Mean Exp. Number 0.00558 Up.Conf.Int. 1 Found 1 67 ATTTTTG 61 (Mism.= 0) TFBS AC: RSP00060//OS: maize (Zea mays) /GENE: rab28/TFBS: CE3 /BF: ABF Motifs on "+" Strand: Mean Exp. Number 0.00527 Up.Conf.Int. 1 Found 1 131 ACGCGCCTCCTC 142 (Mism.= 0) TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 165 GACACGTgGA 156 (Mism.= 1) TFBS AC: RSP00188//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 156 TCcACGTGTC 165 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 165 GACACGTGGa 156 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 156 TCCACGTGTC 165 (Mism.= 0) TFBS AC: RSP00462//OS: tomato (Lycopersicon esculentum) /GENE: RBCS1; RBCS2; RBCS3A;/TFBS: I-box /BF: IBF Motifs on "-" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 53 GGAgGAGATAAGA 41 (Mism.= 1) TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 231 TGGAcTATGTG 221 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 165 GaCACGTGGA 156 (Mism.= 1) TFBS AC: RSP00891//OS: Solanum melongena /GENE: SmCP/TFBS: EE 1 /BF: Dof factors Motifs on "+" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 63 AAAATATcT 71 (Mism.= 1) TFBS AC: RSP00937//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: I box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 41 TCTTATCTCcTCC 53 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 156 TCCACGTGTC 165 (Mism.= 0) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 165 gACACGTGgA 156 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00846 Up.Conf.Int. 1 Found 1 165 gACACGTGgA 156 (Mism.= 2) TFBS AC: RSP00989//OS: maize (Zea mays) /GENE: RBR3/TFBS: E2F/DP IV /BF: E2F/DP Motifs on "-" Strand: Mean Exp. Number 0.00347 Up.Conf.Int. 1 Found 1 105 TCTCCCGtC 97 (Mism.= 1) TFBS AC: RSP01081//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L3 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 51 TCCAtCCATCCA 62 (Mism.= 1) TFBS AC: RSP01115//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00558 Up.Conf.Int. 1 Found 1 61 CAAAAAT 67 (Mism.= 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 165 GACACGTGGa 156 (Mism.= 1) TFBS AC: RSP01167//OS: maize (Zea mays) /GENE: pMS1/TFBS: TATA box /BF: HMG proteins Motifs on "+" Strand: Mean Exp. Number 0.00847 Up.Conf.Int. 1 Found 1 63 aAAATATCT 71 (Mism.= 1) TFBS AC: RSP01174//OS: maize (Zea mays) /GENE: Sh/TFBS: Zmhox1a BS 1 /BF: Zmhox1a Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 107 gtTCTCCCGTC 97 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 164 ACACGTGG 157 (Mism.= 0) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 156 TCCACGTgTC 165 (Mism.= 1) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00013 Up.Conf.Int. 1 Found 1 96 gTCTCgTCcCCGTCT 82 (Mism.= 3) TFBS AC: RSP01499//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 91 gTCCCCGTCT 82 (Mism.= 1) TFBS AC: RSP01500//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 91 gTCCCCGTCT 82 (Mism.= 1) TFBS AC: RSP01582//OS: tomato (Lycopersicon esculentum) /GENE: rbcS-1/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 55 aTGGAgGAGATAAGA 41 (Mism.= 2) TFBS AC: RSP01585//OS: tobacco (Nicotiana tabacum) /GENE: Ntss-23/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 55 atGGAgGAGATAAGA 41 (Mism.= 3) TFBS AC: RSP01588//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS-8B/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 55 atGGAgGAGATAAGA 41 (Mism.= 3) TFBS AC: RSP01590//OS: soybean (Glycine max) /GENE: SRS-1/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 55 AtGGAgGAGATAAGA 41 (Mism.= 2) TFBS AC: RSP01592//OS: soybean (Glycine max) /GENE: SRS-4/TFBS: Box I /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 55 AtGGAgGAGATAAGA 41 (Mism.= 2) TFBS AC: RSP01722//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA17/AXR3 (At1g04250)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 155 gTCCACGTGTCc 166 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 156 tCCACGTGTC 165 (Mism.= 1) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 157 CCACGTGtCC 166 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 156 tCCACGTGTC 165 (Mism.= 1) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 165 gACACGTGgA 156 (Mism.= 2) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 165 GACACGTG 158 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 156 TCCACGTGtC 165 (Mism.= 1) TFBS AC: RSP02252//OS: green unicellular alga (Ostreococcus tauri) /GENE: TOC1/TFBS: EE (TOC1) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00589 Up.Conf.Int. 1 Found 1 63 AAAATATCT 71 (Mism.= 0) TFBS AC: RSP02287//OS: pea (Pisum sativum) /GENE: TRX f/TFBS: EE (TRX f) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 72 GAGATATT 65 (Mism.= 0) TFBS AC: RSP02288//OS: pea (Pisum sativum) /GENE: TRX m1/TFBS: EE (TRX m1) /BF: CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00627 Up.Conf.Int. 1 Found 1 72 gAGATATT 65 (Mism.= 1) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 165 GACACGTGGA 156 (Mism.= 0) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 156 TcCACGTGTc 165 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 165 GACACGTGGA 156 (Mism.= 0) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00615 Up.Conf.Int. 1 Found 1 165 GACACGTGGA 156 (Mism.= 0) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 158 CACGTGTC 165 (Mism.= 0) TFBS AC: RSP02633//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00499 Up.Conf.Int. 1 Found 1 63 AAAATATCT 71 (Mism.= 0) TFBS AC: RSP02656//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: EE /BF: RVE1; RVE8; LHY; CCA1; RVE4; RVE7; TLP11; RVE2; RVE3 Motifs on "+" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 63 AAAATATCT 71 (Mism.= 0) TFBS AC: RSP02821//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 63 AAAATATCT 71 (Mism.= 0) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 71 AGATATTTT 63 (Mism.= 0) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 71 AGATATTTT 63 (Mism.= 0) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00769 Up.Conf.Int. 1 Found 1 95 TCTCgTCCcC 86 (Mism.= 2) Totally 51 motifs of 51 different TFBSs have been found ____________________________________________________________ >PLPR0496..AC:L21976.1..OS:Petunia hybrida..GENE:ACO1..PROD:1-aminocyclopropane-1-carboxylate oxidase..[ -200: +51] ..CDS: +78..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.08 T - 0.35 C - 0.23 TFBS AC: RSP00355//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00766 Up.Conf.Int. 1 Found 1 227 TAACAGAA 220 (Mism.= 0) TFBS AC: RSP00850//OS: maize (Zea mays) /GENE: H4C7/TFBS: CAT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 113 GCCAAC 108 (Mism.= 0) TFBS AC: RSP01072//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1d /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00854 Up.Conf.Int. 1 Found 1 101 ATTACtTGTT 110 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00736 Up.Conf.Int. 1 Found 1 185 CTTTCTTTGG 176 (Mism.= 1) TFBS AC: RSP01499//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 124 TTtCCaGTCT 115 (Mism.= 2) TFBS AC: RSP01500//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 124 TTtCCaGTCT 115 (Mism.= 2) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 1) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00540 Up.Conf.Int. 1 Found 1 166 CTATAAATAG 175 (Mism.= 1) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 175 CTATTTATAG 166 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0497..AC:AB012637.1..OS:Nicotiana sylvestris..GENE:Lhcb1*2..PROD:light harvesting chlorophyll a/b-binding protein..[ -200: +51] ..CDS: +61..TSS:201 (+1) # Alternative TSS(s): +4 |Taxon: Dicot | Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.30 C - 0.21 TFBS AC: RSP00016//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: RY /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 84 CATGCAC 78 (Mism.= 0) TFBS AC: RSP00085//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGL3-BE /BF: AGL3 Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 166 TTTCTATATATAGTgA 181 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 181 TcACTATATATAGAAA 166 (Mism.= 1) TFBS AC: RSP00180//OS: barley (Hordeum vulgare) /GENE: EPB-1/TFBS: GARE-4 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 243 GTAAgAGAtTGCTaG 229 (Mism.= 3) TFBS AC: RSP00324//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: cab-1B/TFBS: Ic box /BF: IBF-2a Motifs on "+" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 131 TAGATATCACTaGATAAGgac 151 (Mism.= 4) TFBS AC: RSP00601//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich R /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00495 Up.Conf.Int. 1 Found 1 28 CCCaACCAA 20 (Mism.= 1) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 180 CaCTATATAT 171 (Mism.= 1) TFBS AC: RSP01331//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: CArG3 (AGL15) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 166 TTtCTATATATAGTgA 181 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 181 TcACTATATATAGaAA 166 (Mism.= 2) TFBS AC: RSP01332//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DTA4/TFBS: CArG3 (DTA4) /BF: AGL15 Motifs on "+" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 166 TTtCTATATATAGTgA 181 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 181 TcACTATATATAGaAA 166 (Mism.= 2) TFBS AC: RSP02419//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 92-94 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 9 GATCCCAT 2 (Mism.= 0) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 65 CTAAACCAtC 56 (Mism.= 1) Totally 13 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0498..AC:AB002807..OS:Glycine max..GENE:nodulin-35 (N-35)..PROD:uricase II..[ -200: +51] ..CDS: +65..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.19 T - 0.25 C - 0.18 TFBS AC: RSP00069//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif j/k /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00690 Up.Conf.Int. 1 Found 1 88 CAATGATGTAA 98 (Mism.= 2) TFBS AC: RSP00114//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00262 Up.Conf.Int. 1 Found 1 156 CTTGTCcTCA 165 (Mism.= 1) TFBS AC: RSP00155//OS: cucumber (Cucumis sativus) /GENE: hpr-A/TFBS: 13 bp CytRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 222 AAGAaTGtTTGAG 210 (Mism.= 2) TFBS AC: RSP00696//OS: Brassica oleracea /GENE: SLG13/TFBS: Box I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 86 GACAATGATgTAa 98 (Mism.= 2) TFBS AC: RSP00867//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: GCC-box /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00138 Up.Conf.Int. 1 Found 1 110 TGCGCCCT 103 (Mism.= 0) TFBS AC: RSP01458//OS: soybean (Glycine max) /GENE: BiP9/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 59 ATTgAAAAATTTA 71 (Mism.= 1) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "-" Strand: Mean Exp. Number 0.00324 Up.Conf.Int. 1 Found 1 136 CTTTCCCC 129 (Mism.= 0) TFBS AC: RSP02981//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/3 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00945 Up.Conf.Int. 1 Found 1 38 CTATTTGTAG 47 (Mism.= 1) Totally 8 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0499..AC:AB012637.1..OS:Nicotiana sylvestris..GENE:Lhcb1*4..PROD:light harvesting chlorophyll a/b-binding protein..[ -200: +51] ..CDS: +61..TSS:201 (+1) # Alternative TSS(s): -4 +3 |Taxon: Dico Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.16 T - 0.30 C - 0.24 TFBS AC: RSP00125//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (3) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00756 Up.Conf.Int. 1 Found 1 46 AAgATTTTTAcT 35 (Mism.= 2) TFBS AC: RSP00133//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS-3A/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00756 Up.Conf.Int. 1 Found 1 46 AAgATTTTTAcT 35 (Mism.= 2) TFBS AC: RSP00245//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: AG2 /BF: LFU Motifs on "+" Strand: Mean Exp. Number 0.00134 Up.Conf.Int. 1 Found 1 107 TACCCAATGaGaT 119 (Mism.= 2) TFBS AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE III /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 20 CATGtGTGGC 11 (Mism.= 1) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0500..AC:AB012638.1..OS:Nicotiana sylvestris..GENE:Lhcb1*5..PROD:light harvesting chlorophyll a/b-binding protein..[ -200: +51] ..CDS: +59..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.15 T - 0.31 C - 0.18 TFBS AC: RSP00683//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -190 half G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00226 Up.Conf.Int. 1 Found 1 66 GCCAAaTGGA 75 (Mism.= 1) TFBS AC: RSP00741//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 1 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00402 Up.Conf.Int. 1 Found 1 85 AAAAGGTTAcAA 96 (Mism.= 1) TFBS AC: RSP00742//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 2r /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00329 Up.Conf.Int. 1 Found 1 57 GCACCGTTAAAg 46 (Mism.= 1) TFBS AC: RSP00888//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (2) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 32 AAAAATCTA 40 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00401 Up.Conf.Int. 1 Found 1 11 AAAAATCTA 3 (Mism.= 0) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00310 Up.Conf.Int. 1 Found 1 65 TGCCAaaTGGAA 76 (Mism.= 2) TFBS AC: RSP00961//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: PB1 /BF: BPBF Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 82 TGCAAAAG 89 (Mism.= 0) TFBS AC: RSP00996//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-1 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 216 GTTGATTTGA 207 (Mism.= 1) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 68 CAAATGGAaA 77 (Mism.= 1) TFBS AC: RSP01631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZCP4/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00492 Up.Conf.Int. 1 Found 1 237 CTTGAATGCAC 227 (Mism.= 2) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00128 Up.Conf.Int. 1 Found 1 11 TTAaACGTATAA 22 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00870 Up.Conf.Int. 1 Found 1 22 TTAtACGTtTAA 11 (Mism.= 2) TFBS AC: RSP02684//OS: rice (Oryza sativa) /GENE: STAR1/TFBS: ASR5 BS /BF: ASR5 Motifs on "+" Strand: Mean Exp. Number 0.00858 Up.Conf.Int. 1 Found 1 188 AGCCCAT 194 (Mism.= 0) TFBS AC: RSP02858//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00777 Up.Conf.Int. 1 Found 1 152 TGGGCC 157 (Mism.= 0) Totally 14 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0501..AC:AB012638.1..OS:Nicotiana sylvestris..GENE:Lhcb1*6..PROD:light harvesting chlorophyll a/b-binding protein..[ -200: +51] ..CDS: +61..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Dicot | Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.12 T - 0.28 C - 0.21 TFBS AC: RSP00041//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: AACA box (P) /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 185 CAACAGACTACATC 198 (Mism.= 2) TFBS AC: RSP00227//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX III* /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00345 Up.Conf.Int. 1 Found 1 140 AAGATAAGA 148 (Mism.= 0) TFBS AC: RSP00313//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: G-box /BF: GBF (CG-1) Motifs on "-" Strand: Mean Exp. Number 0.00717 Up.Conf.Int. 1 Found 1 79 gACATGGCACT 69 (Mism.= 1) TFBS AC: RSP00609//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: UN I1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00676 Up.Conf.Int. 1 Found 1 18 taTGTGGTCTTAA 6 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00167 Up.Conf.Int. 1 Found 1 241 TTCTtTCTCCT 251 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00801 Up.Conf.Int. 1 Found 1 125 AGAtAGAGA 133 (Mism.= 1) TFBS AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/TFBS: CLE-core /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 33 GTGGTCCA 26 (Mism.= 1) TFBS AC: RSP00913//OS: maize (Zea mays) /GENE: b-32/TFBS: B1 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 82 GTTGACATGG 73 (Mism.= 1) TFBS AC: RSP01032//OS: arabidopsis (Arabidopsis thaliana) /GENE: SOC1/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00240 Up.Conf.Int. 1 Found 1 24 CCAAAATATG 15 (Mism.= 1) TFBS AC: RSP01114//OS: Agrobacterium tumefaciens (Ti-plasmid) /GENE: ags/TFBS: CCAAT box-like motif 1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 24 CCAAAAT 18 (Mism.= 0) TFBS AC: RSP01135//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: I-box-like sequence /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00889 Up.Conf.Int. 1 Found 1 131 AGATATcATAAgA 143 (Mism.= 2) TFBS AC: RSP01280//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex motif /BF: OBF4; OBF5 Motifs on "-" Strand: Mean Exp. Number 0.00407 Up.Conf.Int. 1 Found 1 82 GtTGACaTGGC 72 (Mism.= 2) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "+" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 72 GCCAtGTCAaC 82 (Mism.= 2) TFBS AC: RSP02916//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS3 /BF: IpMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00771 Up.Conf.Int. 1 Found 1 129 TATCTACaAT 120 (Mism.= 1) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 29 tCCAACCA 22 (Mism.= 1) Totally 15 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0502..AC:AB012639.1..OS:Nicotiana sylvestris..GENE:Lhcb1*7..PROD:light harvesting chlorophyll a/b-binding protein..[ -200: +51] ..CDS: +72..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.32 C - 0.17 TFBS AC: RSP00792//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: DAE /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00496 Up.Conf.Int. 1 Found 1 200 tCAAGCAACA 209 (Mism.= 1) TFBS AC: RSP00885//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: AACA motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 206 AACAAATCAACTC 218 (Mism.= 2) TFBS AC: RSP00888//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: CCA1 motif (2) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00595 Up.Conf.Int. 1 Found 1 43 AAAAATCTA 51 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 24 AAAAATCTA 16 (Mism.= 0) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00631 Up.Conf.Int. 1 Found 1 79 CAAATGGAcA 88 (Mism.= 1) TFBS AC: RSP01509//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 110 ACCAATCAG 118 (Mism.= 0) TFBS AC: RSP01510//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CCAAT box /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 110 ACCAATCAG 118 (Mism.= 0) TFBS AC: RSP01757//OS: soybean (Glycine max) /GENE: a2/TFBS: BBS /BF: B Motifs on "+" Strand: Mean Exp. Number 0.00254 Up.Conf.Int. 1 Found 1 241 GTCAAGAC 248 (Mism.= 0) Totally 8 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0503..AC:M11395..OS:Glycine max..GENE:Gmhsp17.5-E..PROD:heat shock protein ..[ -200: +51] ..CDS: +83 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.29 C - 0.19 TFBS AC: RSP00459//OS: coix /GENE: alpha-coixin/TFBS: O2u /BF: O2 Motifs on "-" Strand: Mean Exp. Number 0.00533 Up.Conf.Int. 1 Found 1 205 TTGACGAGGA 196 (Mism.= 1) TFBS AC: RSP01163//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: AT-rich region /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 48 GAAGAAAAATAAATATAATGATGTGTAGTAAACA 81 (Mism.= 0) TFBS AC: RSP01164//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: HSE(1) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 129 TAGGATTTTTCTGGAACATACAAG 152 (Mism.= 0) TFBS AC: RSP01165//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: HSE(2) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00030 Up.Conf.Int. 1 Found 1 98 GGTGTGGAGAATTC 111 (Mism.= 0) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00609 Up.Conf.Int. 1 Found 1 160 TTTCACTT 167 (Mism.= 0) TFBS AC: RSP01751//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-1/TFBS: distalB-like /BF: AREB2/ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 49 TCCACTTCT 41 (Mism.= 1) TFBS AC: RSP01894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PKp-beta1/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00311 Up.Conf.Int. 1 Found 1 123 aAAAAGTAgGAtTTT 137 (Mism.= 3) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "+" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 113 ACCAAaTTGcA 123 (Mism.= 2) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 141 CaGAAAAATC 132 (Mism.= 1) TFBS AC: RSP02998//OS: rice (Oryza sativa) /GENE: OsCBF1/TFBS: DRE /BF: ROC1 Motifs on "+" Strand: Mean Exp. Number 0.00927 Up.Conf.Int. 1 Found 1 222 CCTGTTT 228 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0504..AC:M11318..OS:Glycine max..GENE:Gmhsp17.5-M..PROD:heat shock protein ..[ -200: +51] ..CDS: +90..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.26 C - 0.18 TFBS AC: RSP00195//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt2/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00086 Up.Conf.Int. 1 Found 1 65 TCCGTGTACgA 55 (Mism.= 1) TFBS AC: RSP00342//OS: spinach (Spinacia oleracea) /GENE: rps1/TFBS: S1F BS3 /BF: S1F Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 156 ATCcTTTcACTtACTTT 172 (Mism.= 3) TFBS AC: RSP00661//OS: soybean (Glycine max) /GENE: vspB/TFBS: JA-RD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 43 gCaCTAGAACCTTCg 57 (Mism.= 3) TFBS AC: RSP00669//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: PG/TFBS: B-box /BF: fruit nuclear protein extracts Motifs on "-" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 96 TGATtcTATAAAAA 83 (Mism.= 2) TFBS AC: RSP01164//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: HSE(1) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 129 cAcGATTTTTCTGGAACgTACAcG 152 (Mism.= 4) TFBS AC: RSP01165//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: HSE(2) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00025 Up.Conf.Int. 1 Found 1 63 GGaGTGGAGAAgTC 76 (Mism.= 2) TFBS AC: RSP01229//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00292 Up.Conf.Int. 1 Found 1 107 gTaAAACCAACCAA 120 (Mism.= 2) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 73 tTCTCCaCTCCGTgT 59 (Mism.= 3) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 160 TTTCACTT 167 (Mism.= 0) TFBS AC: RSP01651//OS: wheat (Triticum aestivum) /GENE: TaVRN1/TFBS: CArG motif /BF: TaVRT2 Motifs on "+" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 239 CTCaTTTTG 247 (Mism.= 1) TFBS AC: RSP02014//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_1) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00834 Up.Conf.Int. 1 Found 1 102 TtCAAATGAT 93 (Mism.= 1) TFBS AC: RSP02202//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: MYCS (SmPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00960 Up.Conf.Int. 1 Found 1 35 TTTCTTGTTCT 25 (Mism.= 1) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00640 Up.Conf.Int. 1 Found 1 35 TTTCTTGTTCT 25 (Mism.= 0) TFBS AC: RSP02204//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: MYCS (SmPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 35 TTTCTTGTTCT 25 (Mism.= 1) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00386 Up.Conf.Int. 1 Found 1 35 TTTCTTGTTCT 25 (Mism.= 1) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00640 Up.Conf.Int. 1 Found 1 35 TTTCTTGTTCT 25 (Mism.= 0) TFBS AC: RSP02207//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: MYCS (NtPT5) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 35 TTTCTTGTTCT 25 (Mism.= 1) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "+" Strand: Mean Exp. Number 0.00833 Up.Conf.Int. 1 Found 1 116 ACCAAaTTGcA 126 (Mism.= 2) TFBS AC: RSP02304//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS1 (W) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 196 TTTCTGACTAaT 185 (Mism.= 1) TFBS AC: RSP02308//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.5) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00715 Up.Conf.Int. 1 Found 1 196 tTTCTGACtAAT 185 (Mism.= 2) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00357 Up.Conf.Int. 1 Found 1 141 CaGAAAAATC 132 (Mism.= 1) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "+" Strand: Mean Exp. Number 0.00693 Up.Conf.Int. 1 Found 1 112 ACCAACCA 119 (Mism.= 0) Totally 22 motifs of 22 different TFBSs have been found ____________________________________________________________ >PLPR0505..AC:AJ312199.1..OS:Oryza sativa..GENE:OsEPB-89..PROD:ethylene responsive protein..[ -200: +51] ..CDS: +42..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.24 T - 0.17 C - 0.34 TFBS AC: RSP00743//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 3 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00698 Up.Conf.Int. 1 Found 1 188 GAGTGGTAAATa 177 (Mism.= 1) TFBS AC: RSP00915//OS: maize (Zea mays) /GENE: b-32/TFBS: B3 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 140 GCTGATGTGG 131 (Mism.= 1) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "-" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 26 AAAAGTTgGTTg 15 (Mism.= 2) TFBS AC: RSP00948//OS: rice (Oryza sativa), Oryza sativa /GENE: PHYA/TFBS: GT3-bx /BF: GT-2 Motifs on "-" Strand: Mean Exp. Number 0.00856 Up.Conf.Int. 1 Found 1 184 GGTAAAT 178 (Mism.= 0) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00949 Up.Conf.Int. 1 Found 1 33 ATTTTTTTAa 42 (Mism.= 1) TFBS AC: RSP02425//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: SEQ20 /BF: WRKY70 Motifs on "+" Strand: Mean Exp. Number 0.00055 Up.Conf.Int. 1 Found 1 161 acGACGACTTTT 172 (Mism.= 2) TFBS AC: RSP02437//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MINI3/TFBS: W3-box /BF: MINI3 Motifs on "+" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 52 TTGACAA 58 (Mism.= 0) TFBS AC: RSP02576//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: WT-box (cons) /BF: WRKY70 Motifs on "+" Strand: Mean Exp. Number 0.00200 Up.Conf.Int. 1 Found 1 165 CGACTTTT 172 (Mism.= 0) TFBS AC: RSP02709//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 1 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00463 Up.Conf.Int. 1 Found 1 43 CTtAAAAaAAT 33 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0506..AC:AF325673.1..OS:Petunia hybrida..GENE:LRR protein S/D4 (SHY)..PROD:LRR protein S/D4 (SHY)..[ -200: +51] ..CDS: +236..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.12 T - 0.36 C - 0.16 TFBS AC: RSP02332//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 6 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00691 Up.Conf.Int. 1 Found 1 219 ACCTACT 213 (Mism.= 0) TFBS AC: RSP02530//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 3 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 26 TAGTACAC 19 (Mism.= 0) TFBS AC: RSP02610//OS: extreme halophyte (Salicornia brachiata) /GENE: SbpAPX/TFBS: repressor-motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00059 Up.Conf.Int. 1 Found 1 149 tACCTCAAATTtG 161 (Mism.= 2) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 41 TTTTGTCC 34 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 41 TTTTGTCC 34 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0507..AC:AJ616027.1..OS:Arabidopsis thaliana..GENE:COW1..PROD:can of worms 1 protein..[ -200: +51] ..CDS: +96..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.10 T - 0.38 C - 0.25 TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00904 Up.Conf.Int. 1 Found 1 149 TGGTCAtTTa 158 (Mism.= 2) TFBS AC: RSP00468//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 148 TTGGTCAtTTa 158 (Mism.= 2) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 79 CCTCTATTGG 70 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 124 GAGAaAGctAGAGAGAA 108 (Mism.= 3) TFBS AC: RSP01435//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: BoxII /BF: RNFG2 Motifs on "+" Strand: Mean Exp. Number 0.00702 Up.Conf.Int. 1 Found 1 53 TCCCCAAaCA 62 (Mism.= 1) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00094 Up.Conf.Int. 1 Found 1 151 CCAAAATGT 143 (Mism.= 0) TFBS AC: RSP01482//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE2 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 158 TAAATGACCAA 148 (Mism.= 2) TFBS AC: RSP01483//OS: carnation (Dianthus caryophillus) /GENE: hcbt2/TFBS: ERE3 /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00486 Up.Conf.Int. 1 Found 1 158 TAAATGACCAA 148 (Mism.= 2) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00617 Up.Conf.Int. 1 Found 1 158 taAATGACCAAA 147 (Mism.= 2) TFBS AC: RSP02176//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp12/III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 94 ATTTTTTTAT 85 (Mism.= 0) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "-" Strand: Mean Exp. Number 0.00284 Up.Conf.Int. 1 Found 1 21 CTCATTTGAa 12 (Mism.= 1) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0508..AC:M11317..OS:Glycine max..GENE:Gmhsp17.6-L..PROD:heat shock protein ..AC [-326:+51]..AC ..CDS: +114 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.36 G - 0.15 T - 0.31 C - 0.18 TFBS AC: RSP00503//OS: tobacco (Nicotiana tabacum) /GENE: Ntltp1/TFBS: D1 box /BF: Different bZIP factors, including RITA-1 Motifs on "+" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 37 CTAGCTAG 44 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00212 Up.Conf.Int. 1 Found 1 44 CTAGCTAG 37 (Mism.= 0) TFBS AC: RSP01164//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: HSE(1) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 129 cAatATTTTTCTGGAACATACAAG 152 (Mism.= 3) TFBS AC: RSP01165//OS: soybean (Glycine max) /GENE: Gmhspl7.5-E Heat Shock Promoter/TFBS: HSE(2) /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 57 cGTGTGGAGAAgTC 70 (Mism.= 2) TFBS AC: RSP01601//OS: spinach (Spinacia oleracea) /GENE: PsaDb/TFBS: Inr /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00840 Up.Conf.Int. 1 Found 1 160 TTTCACTT 167 (Mism.= 0) TFBS AC: RSP02164//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS10 /BF: DOF factors Motifs on "-" Strand: Mean Exp. Number 0.00185 Up.Conf.Int. 1 Found 1 78 aaCTTCAGGACTTcTC 63 (Mism.= 3) TFBS AC: RSP02245//OS: Arabidopsis (Arabidopsis thaliana) /GENE: TAPNAC/TFBS: TCGTGT motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00860 Up.Conf.Int. 1 Found 1 56 TCGTGTGG 63 (Mism.= 1) Totally 7 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0509..AC:M76980.1..OS:Glycine max..GENE: vspB..PROD:vegetative storage protein..[ -200: +51] ..CDS: +53..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.22 T - 0.33 C - 0.10 TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 219 AACAAACTCTTGC 207 (Mism.= 2) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 82 AGAAACTT 89 (Mism.= 0) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "-" Strand: Mean Exp. Number 0.00752 Up.Conf.Int. 1 Found 1 219 AACAAACTCTTGC 207 (Mism.= 2) TFBS AC: RSP01274//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 1 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 149 TaCACGTATC 140 (Mism.= 1) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00519 Up.Conf.Int. 1 Found 1 141 ATACGTGT 148 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00414 Up.Conf.Int. 1 Found 1 142 TACGTGTAgaTC 153 (Mism.= 2) TFBS AC: RSP01621//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E4 /BF: GmDof4; GmDof22 Motifs on "+" Strand: Mean Exp. Number 0.00546 Up.Conf.Int. 1 Found 1 109 aACACTTTTG 118 (Mism.= 1) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00434 Up.Conf.Int. 1 Found 1 149 tACACGTATC 140 (Mism.= 1) TFBS AC: RSP02715//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: AC (DkANR) /BF: DkMyb2 Motifs on "+" Strand: Mean Exp. Number 0.00944 Up.Conf.Int. 1 Found 1 180 AGCtAACCcT 189 (Mism.= 2) TFBS AC: RSP02744//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmPHD BS /BF: GmPHD1; GmPHD2; GmPHD3; GmPHD4; GmPHD5 Motifs on "-" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 193 GTGGAG 188 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0510..AC:X60131.1..OS:Daucus carota..GENE:EMB-1..PROD:EMB-1 protein, expressed in embryos..[ -200: +51] ..CDS: +68..TSS:201 (+1) # Alternative TSS(s): +6 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.18 T - 0.26 C - 0.25 TFBS AC: RSP00066//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1b /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00622 Up.Conf.Int. 1 Found 1 108 ACGTGCCAC 116 (Mism.= 1) TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00573 Up.Conf.Int. 1 Found 1 145 GACACGTAGc 136 (Mism.= 1) TFBS AC: RSP00070//OS: rice (Oryza sativa) /GENE: Osem/TFBS: ABRE motif A /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 138 TACGTGTC 145 (Mism.= 0) TFBS AC: RSP00186//OS: rice (Oryza sativa), Oryza sativa /GENE: Amy3D/TFBS: G-box motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00399 Up.Conf.Int. 1 Found 1 137 CTACGTGtCaA 147 (Mism.= 2) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00246 Up.Conf.Int. 1 Found 1 145 GACACGTaGC 136 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 146 TGACACGTaGCg 135 (Mism.= 2) TFBS AC: RSP00613//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: UN Z1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00419 Up.Conf.Int. 1 Found 1 35 ATCAAGAA 28 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 135 cGCtACGTGTCA 146 (Mism.= 2) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00213 Up.Conf.Int. 1 Found 1 145 GACACGTAGC 136 (Mism.= 1) TFBS AC: RSP01260//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS7 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 137 CTACGTGT 144 (Mism.= 0) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00330 Up.Conf.Int. 1 Found 1 34 ATACGTGT 41 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 170 CTATAAATA 178 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 170 CTATAAATAC 179 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 170 CTATAAATAC 179 (Mism.= 0) TFBS AC: RSP01702//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 42 AACACGTATc 33 (Mism.= 1) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00530 Up.Conf.Int. 1 Found 1 43 TaACACGTATcA 32 (Mism.= 2) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 82 TCACACGTtTcA 93 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 93 TgAaACGTGTGA 82 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "+" Strand: Mean Exp. Number 0.00946 Up.Conf.Int. 1 Found 1 61 AAACCCTA 68 (Mism.= 0) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00973 Up.Conf.Int. 1 Found 1 22 GGCCACT 28 (Mism.= 0) TFBS AC: RSP01977//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(D) /BF: EIN3/EIL1 Motifs on "+" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 189 ATGCATCT 196 (Mism.= 0) TFBS AC: RSP02025//OS: maize (Zea mays) /GENE: ZmWBC11a/TFBS: L-box /BF: OCL1 Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 18 TAAATGTA 11 (Mism.= 0) TFBS AC: RSP02061//OS: maize (Zea mays) /GENE: ZmWBC11a/TFBS: L1 box /BF: OCL1 Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 18 TAAATGTA 11 (Mism.= 0) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00601 Up.Conf.Int. 1 Found 1 83 CACACGTtTC 92 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00231 Up.Conf.Int. 1 Found 1 42 aACACGTATC 33 (Mism.= 1) TFBS AC: RSP02216//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: ACE1 (FHY1) /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 144 ACACGTAG 137 (Mism.= 0) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00946 Up.Conf.Int. 1 Found 1 68 TAGGGTTT 61 (Mism.= 0) TFBS AC: RSP02317//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DREB2A/TFBS: ABRE /BF: AREB/ABF Motifs on "-" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 145 GACACGTA 138 (Mism.= 0) TFBS AC: RSP02398//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: ABRE /BF: ThABF8 Motifs on "-" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 90 AACGTGTG 83 (Mism.= 0) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 33 GAtACGTGTT 42 (Mism.= 1) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00953 Up.Conf.Int. 1 Found 1 19 GTGGGCCA 26 (Mism.= 1) Totally 31 motifs of 29 different TFBSs have been found ____________________________________________________________ >PLPR0511..AC:AF175275.1..OS:Pisum sativum..GENE:CYP73A9..PROD:trans-cinnamic acid hydroxylase..[ -200: +51] ..CDS: +21..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.47 G - 0.06 T - 0.24 C - 0.24 TFBS AC: RSP00017//OS: soybean (Glycine max) /GENE: beta-conglycinin/TFBS: SEF3-BE /BF: SEF3, soybean Embryo Factor 3 Motifs on "+" Strand: Mean Exp. Number 0.00495 Up.Conf.Int. 1 Found 1 142 AACCCA 147 --27-- 175 AACCCA 180 (Mism.= 0/ 0) TFBS AC: RSP00681//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 4 /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 24 TAATTAATC 32 (Mism.= 0) TFBS AC: RSP01048//OS: arabidopsis (Arabidopsis thaliana) /GENE: CPC/TFBS: WBSI /BF: WER Motifs on "-" Strand: Mean Exp. Number 0.00280 Up.Conf.Int. 1 Found 1 40 TTTAAAATgAtTAaTTATGt 21 (Mism.= 4) TFBS AC: RSP01233//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/TFBS: PLE-79 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 110 AGCAAGA 116 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00607 Up.Conf.Int. 1 Found 1 107 TCATtCATGT 98 (Mism.= 1) TFBS AC: RSP02108//OS: Sesbania rostrata /GENE: Srglb3/TFBS: ATRE-BS2* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 42 ATTTTaAAATgATTAATTAt 23 (Mism.= 3) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0512..AC:AF175278.1..OS:Pisum sativum..GENE:CYP82A1..PROD:wound-inducible P450 hydroxylase..[ -200: +51] ..CDS: +18..TSS:201 (+1) # Alternative TSS(s): +3 +8 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.08 T - 0.33 C - 0.22 TFBS AC: RSP00447//OS: maize /GENE: pepcZm2A/TFBS: box b /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 44 AGCAAAGCtA 53 (Mism.= 1) TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 210 TCAAAAATATGg 221 (Mism.= 1) TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00853 Up.Conf.Int. 1 Found 1 219 TGGATTtTGTc 229 (Mism.= 2) TFBS AC: RSP00576//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3A/TFBS: AT-rich FF1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 73 TAaATCaAATTAaTATTgTA 92 (Mism.= 4) TFBS AC: RSP00662//OS: soybean (Glycine max) /GENE: vspB/TFBS: PRD motif 2 /BF: nuclear extract protein(s) Motifs on "-" Strand: Mean Exp. Number 0.00093 Up.Conf.Int. 1 Found 1 223 ATCCATATTTTtGaT 209 (Mism.= 2) TFBS AC: RSP01073//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em2b /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00529 Up.Conf.Int. 1 Found 1 42 CAAGCAaAG 50 (Mism.= 1) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 249 GTGGTGTTAA 240 (Mism.= 1) TFBS AC: RSP02230//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AGCC-box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00602 Up.Conf.Int. 1 Found 1 136 GCAGCC 141 (Mism.= 0) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 223 TTTTGTCC 230 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "+" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 223 TTTTGTCC 230 (Mism.= 0) Totally 10 motifs of 10 different TFBSs have been found ____________________________________________________________ >PLPR0513..AC:M96073.1..OS:Arabidopsis thaliana..GENE:PAT1..PROD:phosphoribosylanthranilate transferase..[ -200: +51] ..CDS: +42..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.29 C - 0.14 TFBS AC: RSP00234//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: CArG Box 2 /BF: unknown Motifs on "-" Strand: Mean Exp. Number 0.00974 Up.Conf.Int. 1 Found 1 104 GCTTATAAAG 95 (Mism.= 2) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 209 TTtTCTCTaCT 219 (Mism.= 2) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 162 AGAGAGGAA 170 (Mism.= 0) TFBS AC: RSP01080//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L2 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00169 Up.Conf.Int. 1 Found 1 191 tCTCtCCTTCGT 202 (Mism.= 2) TFBS AC: RSP01205//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 94 CCTTTATAAG 103 (Mism.= 1) TFBS AC: RSP02717//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkLAR/TFBS: AC (DkLAR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00316 Up.Conf.Int. 1 Found 1 231 CTcAACCAAC 222 (Mism.= 1) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0514..AC:X07160..OS:Glycine max..GENE:Gmhsp18.5-C..PROD:heat shock protein ..[ -200: +51] ..CDS: +78..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.31 C - 0.16 TFBS AC: RSP00180//OS: barley (Hordeum vulgare) /GENE: EPB-1/TFBS: GARE-4 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 213 GTAACAcAATGCgaG 199 (Mism.= 3) TFBS AC: RSP00501//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em2 /BF: EmBP-1 Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 192 CGAGCAG 186 (Mism.= 0) TFBS AC: RSP02118//OS: fungus Trichoderma harzianum /GENE: ech-42/TFBS: Cre1 BS1 /BF: Cre1 Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 75 CCaGGGGC 68 (Mism.= 1) TFBS AC: RSP02920//OS: Medicago truncatula /GENE: CYP93E2/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 196 AaCACGAGcA 187 (Mism.= 2) TFBS AC: RSP02924//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 196 aACACGAGcA 187 (Mism.= 2) TFBS AC: RSP02927//OS: Medicago truncatula /GENE: UGT73F3/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00380 Up.Conf.Int. 1 Found 1 196 aACACGAGCA 187 (Mism.= 1) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0515..AC:L08425.1..OS:Zea mays (cultivar W22)..GENE:ER-abp1..PROD:auxin-binding protein..[ -200: +51] ..CDS: +111..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.25 G - 0.25 T - 0.22 C - 0.27 TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00323 Up.Conf.Int. 1 Found 1 193 CAAATGGAGc 184 (Mism.= 1) TFBS AC: RSP01046//OS: tobacco (Nicotiana tabacum) /GENE: histone genes (oligo)/TFBS: NON /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 31 gAATCCAAC 23 (Mism.= 1) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00571 Up.Conf.Int. 1 Found 1 166 CCACAGGC 173 (Mism.= 0) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 143 gCTTGTCTCT 152 (Mism.= 1) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00437 Up.Conf.Int. 1 Found 1 233 GTGGTTTTGA 224 (Mism.= 1) TFBS AC: RSP02170//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp4/I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 196 GATCAAA 190 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0516..AC:X07159..OS:Glycine max..GENE:Gmhsp17.9-D..PROD:heat shock protein ..[ -200: +51] ..CDS: +73..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.28 C - 0.27 TFBS AC: RSP00663//OS: soybean (Glycine max) /GENE: VspB/TFBS: SRD motif /BF: nuclear extract protein(s) Motifs on "+" Strand: Mean Exp. Number 0.00446 Up.Conf.Int. 1 Found 1 165 CCCGtATAAATTG 177 (Mism.= 1) TFBS AC: RSP00734//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: CDA-1 BS /BF: DET1; CDA-1 Motifs on "+" Strand: Mean Exp. Number 0.00667 Up.Conf.Int. 1 Found 1 100 CAAAACGC 107 (Mism.= 0) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00266 Up.Conf.Int. 1 Found 1 148 AGAAAGAAA 140 (Mism.= 0) TFBS AC: RSP01016//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00816 Up.Conf.Int. 1 Found 1 206 AGAAACAT 213 (Mism.= 0) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00706 Up.Conf.Int. 1 Found 2 85 AGAAACTT 92 (Mism.= 0) 129 AGAAACTT 136 (Mism.= 0) TFBS AC: RSP01981//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: S3 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 105 GTTTTGGAA 97 (Mism.= 0) TFBS AC: RSP02097//OS: tomato (Lycopersicon esculentum) /GENE: LeftsH6/TFBS: HSE3 /BF: tomato HsfA2 Motifs on "-" Strand: Mean Exp. Number 0.00226 Up.Conf.Int. 1 Found 1 220 TTTGCGAATGTTT 208 (Mism.= 2) TFBS AC: RSP02129//OS: rice (Oryza sativa) /GENE: OsAns/TFBS: OsC1-MYB BS /BF: OsC1 Motifs on "+" Strand: Mean Exp. Number 0.00736 Up.Conf.Int. 1 Found 1 184 ACCcACCCTTT 194 (Mism.= 1) TFBS AC: RSP02516//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-2 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "+" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 53 TGGAAGTTTCAc 64 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 2 139 TGGAAGTTTCtG 128 (Mism.= 1) 95 TGGAAGTTTCtG 84 (Mism.= 1) TFBS AC: RSP02719//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: MYBcore (DkANR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 47 tTCGGTTATG 38 (Mism.= 1) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "+" Strand: Mean Exp. Number 0.00053 Up.Conf.Int. 1 Found 2 85 AGAAACTTCC 94 (Mism.= 0) 129 AGAAACTTCC 138 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 63 tGAAACTTCC 54 (Mism.= 1) Totally 16 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0517..AC:M23105.1..OS:Arabidopsis thaliana..GENE:HSP70-1..PROD:heat shock protein..[ -200: +51] ..CDS: +107..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.29 C - 0.27 TFBS AC: RSP00030//OS: tobacco (Nicotiana sylvestris) /GENE: OLP/TFBS: ERRE /BF: EREBP Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP00082//OS: tobacco (Nicotiana plumbaginifolia) /GENE: GLB/TFBS: AGC-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 42 TTAGGGTTT 50 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 50 AAACCCTAA 42 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00027 Up.Conf.Int. 1 Found 1 42 TTAGGGTTT 50 (Mism.= 0) TFBS AC: RSP01011//OS: arabidopsis (Arabidopsis thaliana) /GENE: rd29A/TFBS: AtEBP BS /BF: AtEBP Motifs on "+" Strand: Mean Exp. Number 0.00401 Up.Conf.Int. 1 Found 1 219 AGCCGCCtT 227 (Mism.= 1) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00202 Up.Conf.Int. 1 Found 1 51 aAAACCCTAA 42 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 51 aaAACCCTAA 42 (Mism.= 2) TFBS AC: RSP01344//OS: rice (Oryza sativa) /GENE: Pathogenesis-related genes/TFBS: GCC box /BF: OsEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP01523//OS: potato (Solanum tuberosum) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: StEREBP1 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP01764//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HLS1 (AT4G37580)/TFBS: ERE /BF: TINY Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP01775//OS: tobacco (Nicotiana tabacum) /GENE: :/TFBS: : /BF: JERF3 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 50 AAACCCTA 43 (Mism.= 0) TFBS AC: RSP01994//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GCC box /BF: RAP2.6 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 131 CAAAAATTGG 122 (Mism.= 1) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 43 TAGGGTTT 50 (Mism.= 0) TFBS AC: RSP02348//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LEA4-5/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP02362//OS: Arabidopsis (Arabidopsis thaliana) /GENE: b-CHI/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP02363//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PDF1.2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP02364//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ELI3-2/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP02365//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GSTF7/TFBS: GCC box /BF: ERF1 Motifs on "+" Strand: Mean Exp. Number 0.00562 Up.Conf.Int. 1 Found 1 219 AGCCGCC 225 (Mism.= 0) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 50 AAACCCTAA 42 (Mism.= 0) TFBS AC: RSP02974//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI2/TFBS: O-box (ABI2) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 115 TcaTCGACCAAT 126 (Mism.= 2) TFBS AC: RSP02975//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: O-box (oligo1) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00516 Up.Conf.Int. 1 Found 1 115 TcAtCGACCAAT 126 (Mism.= 2) Totally 24 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0518..AC:M99431.1..OS:Pharbitis nil (=Ipomoea nil)..GENE:Hsp83..PROD:heat shock protein 83..[ -200: +51] ..CDS: +112..TSS:201 (+1) # Alternative TSS(s): -6 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.19 T - 0.29 C - 0.23 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 176 TGTGtTTATATA 165 (Mism.= 1) TFBS AC: RSP00117//OS: tobacco,Nicotiana plumbaginifolia /GENE: cab-E/TFBS: AT-1 (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00267 Up.Conf.Int. 1 Found 1 33 cgTTATTTTTAAA 21 (Mism.= 2) TFBS AC: RSP00744//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 4 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00915 Up.Conf.Int. 1 Found 1 160 AGtAGGgAAAAC 149 (Mism.= 2) TFBS AC: RSP00919//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSI /BF: MYB.Ph3 Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 208 cAAAAgCGGTTA 219 (Mism.= 2) TFBS AC: RSP01476//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: E motif /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00975 Up.Conf.Int. 1 Found 1 26 TTTAAAGT 19 (Mism.= 0) TFBS AC: RSP02114//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: HSE3 /BF: unknown HSF(s) Motifs on "+" Strand: Mean Exp. Number 0.00036 Up.Conf.Int. 1 Found 1 68 AGAAtAcTCCAGAAg 82 (Mism.= 3) TFBS AC: RSP02451//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: MYB BS /BF: MYB2; MYB21; MYV108; MYB112; MYB116 Motifs on "+" Strand: Mean Exp. Number 0.00136 Up.Conf.Int. 1 Found 1 208 CAAAAGCgGTTAt 220 (Mism.= 2) TFBS AC: RSP02674//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: ABRE /BF: Unknown ABRE binding factor Motifs on "+" Strand: Mean Exp. Number 0.00203 Up.Conf.Int. 1 Found 1 139 GAATACACtCGtTtT 153 (Mism.= 3) TFBS AC: RSP02692//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: CACT box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00251 Up.Conf.Int. 1 Found 1 58 CAGACACTCGac 47 (Mism.= 2) TFBS AC: RSP02848//OS: Duncan grapefruit, Citrus sinensis /GENE: CsLOB1/TFBS: EBE /BF: PthA4 Motifs on "-" Strand: Mean Exp. Number 0.00016 Up.Conf.Int. 1 Found 1 121 GAAggAAAGTTgAAGGCgAA 102 (Mism.= 4) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 45 TCTtCTCCAC 36 (Mism.= 1) TFBS AC: RSP02995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUS4/TFBS: AtIDD8 BS /BF: AtIDD8 Motifs on "-" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 213 CTTTTGTCC 205 (Mism.= 0) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 212 TTTTGTCC 205 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00422 Up.Conf.Int. 1 Found 1 212 TTTTGTCC 205 (Mism.= 0) Totally 14 motifs of 14 different TFBSs have been found ____________________________________________________________ >PLPR0519..AC:AY227363.1..OS:Zea mays..GENE:mads2..PROD:MADS-box transcription factor MADS2..[ -200: +51] ..CDS: +311..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.24 T - 0.21 C - 0.33 TFBS AC: RSP00080//OS: arabidopsis (Arabidopsis thaliana) /GENE: STE2; other genes/TFBS: AGAMOUS MADS BS /BF: MADS domain of AGAMOUS DNA binding factor Motifs on "+" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 113 TTGCtAAATAAaGCAA 128 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 128 TTGCtTTATTTaGCAA 113 (Mism.= 2) TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 5 TTTAGGG 11 (Mism.= 0) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00723 Up.Conf.Int. 1 Found 1 200 CAAACGcACA 209 (Mism.= 1) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00346 Up.Conf.Int. 1 Found 1 184 CTTTTCTTGG 175 (Mism.= 1) TFBS AC: RSP02192//OS: tomato (Lycopersicon esculentum) /GENE: RIN/TFBS: CArG (RIN-a) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00289 Up.Conf.Int. 1 Found 1 116 CTAAAtAAAG 125 (Mism.= 1) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 2 CCATTTAgGG 11 (Mism.= 1) TFBS AC: RSP02200//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 073F/TFBS: CArG (073F) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00432 Up.Conf.Int. 1 Found 1 184 CTTTTcTTGG 175 (Mism.= 1) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "-" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 146 CTTTCCCC 139 (Mism.= 0) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 11 CCCTAAA 5 (Mism.= 0) Totally 10 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0520..AC:AB008810.1..OS:Arabidopsis thaliana..GENE:erd5..PROD:proline dehydrogenase..[ -200: +51] ..CDS: +123..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.37 G - 0.16 T - 0.32 C - 0.16 TFBS AC: RSP00548//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: CAAT/13 Y /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00148 Up.Conf.Int. 1 Found 1 181 GTAACCATaGG 191 (Mism.= 1) TFBS AC: RSP00559//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: 2'/box II J1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 19 TGTAATTTtAG 29 (Mism.= 1) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 211 TTTGgTTgTGTGATTT 196 (Mism.= 2) TFBS AC: RSP00744//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 4 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00982 Up.Conf.Int. 1 Found 1 119 AaCAGGTAAAAC 130 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00537 Up.Conf.Int. 1 Found 1 161 AGCAcGTAAAAC 150 (Mism.= 1) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00506 Up.Conf.Int. 1 Found 1 128 aACGTG 133 -- 6-- 140 CATGCA 145 (Mism.= 1/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00456 Up.Conf.Int. 1 Found 1 159 CACGTa 154 -- 6-- 147 tATGCA 142 (Mism.= 1/ 1) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 163 CTATAAATA 171 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 148 TtATGCATGT 139 (Mism.= 1) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00403 Up.Conf.Int. 1 Found 1 136 aTACACGTtTTA 125 (Mism.= 2) TFBS AC: RSP01725//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00467 Up.Conf.Int. 1 Found 1 162 AagCACGTAAAA 151 (Mism.= 2) TFBS AC: RSP01938//OS: rice (Oryza sativa) /GENE: cab1R/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00351 Up.Conf.Int. 1 Found 1 172 TATGTGGCA 180 (Mism.= 0) TFBS AC: RSP02009//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00473 Up.Conf.Int. 1 Found 1 49 ACAgTGACaAAA 38 (Mism.= 2) Totally 13 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0521..AC:X99214.1..OS:Lycopersicon esculentum..GENE:TPSI1..PROD:phosphate starvation induced gene product..[ -200: +51] ..CDS: +95..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.13 T - 0.35 C - 0.19 TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 154 CCAaGTGGCC 163 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 154 CCAaGTGGCC 163 (Mism.= 1) TFBS AC: RSP00176//OS: tobacco (Nicotiana tabacum); arabidopsis (Arabidopsis thaliana) /GENE: CHN48/TFBS: GCC-box /BF: EREBP Motifs on "-" Strand: Mean Exp. Number 0.00645 Up.Conf.Int. 1 Found 1 170 TAAGAGtgGCC 160 (Mism.= 2) TFBS AC: RSP00522//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E2-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 161 CCACTTG 155 (Mism.= 0) TFBS AC: RSP00607//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich F /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00940 Up.Conf.Int. 1 Found 1 72 TTTGAgTTTaTGATaT 57 (Mism.= 3) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00428 Up.Conf.Int. 1 Found 1 195 AACAAACCCTCTC 207 (Mism.= 2) TFBS AC: RSP00885//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: AACA motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 195 AACAAACCCTCTC 207 (Mism.= 1) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 195 AACAAACCCTCTC 207 (Mism.= 2) TFBS AC: RSP01078//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L0 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00505 Up.Conf.Int. 1 Found 1 242 AaAACCATgCAA 231 (Mism.= 2) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00307 Up.Conf.Int. 1 Found 1 160 GGCCACT 166 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 163 GGCCACT 157 (Mism.= 0) TFBS AC: RSP02015//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P2_2) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 214 TTCATgTGAG 223 (Mism.= 1) TFBS AC: RSP02122//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: PY-box /BF: OSDOF3 Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 42 AAAAAGAAA 50 (Mism.= 0) TFBS AC: RSP02234//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Oleosin/TFBS: RY /BF: LEC2 Motifs on "+" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 232 TGCATGGTT 240 (Mism.= 1) TFBS AC: RSP02400//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b/TFBS: distal-motif /BF: ESE1 Motifs on "-" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 161 CCACTTG 155 (Mism.= 0) TFBS AC: RSP02995//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUS4/TFBS: AtIDD8 BS /BF: AtIDD8 Motifs on "-" Strand: Mean Exp. Number 0.00040 Up.Conf.Int. 1 Found 1 151 CTTTTGTCC 143 (Mism.= 0) TFBS AC: RSP02996//OS: rice (Oryza sativa) /GENE: OsAMT1;2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 150 TTTTGTCC 143 (Mism.= 0) TFBS AC: RSP02997//OS: rice (Oryza sativa) /GENE: OsGDH2/TFBS: OsIDD10 BS /BF: OsIDD10 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 150 TTTTGTCC 143 (Mism.= 0) Totally 18 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0522..AC:AF264749.1..OS:Arabidopsis thaliana..GENE:RCI2A..PROD:hydrophobic protein RCI2A..[ -200: +51] ..CDS: +72..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.47 G - 0.16 T - 0.25 C - 0.12 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 127 AtACGTGGC 135 (Mism.= 1) TFBS AC: RSP00043//OS: rice (Oryza sativa) (Oryza sativa) /GENE: rab16A-D/TFBS: Motif I core /BF: TAF-1,transacting factor Motifs on "+" Strand: Mean Exp. Number 0.00044 Up.Conf.Int. 1 Found 1 128 TACGTGGC 135 (Mism.= 0) TFBS AC: RSP00052//OS: rice (Oryza sativa) (Oryza sativa); /GENE: Rab-16A/TFBS: ABRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00192 Up.Conf.Int. 1 Found 1 127 aTACGTGGCtC 137 (Mism.= 2) TFBS AC: RSP00064//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif I /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00145 Up.Conf.Int. 1 Found 1 126 AaTACGTGGC 135 (Mism.= 1) TFBS AC: RSP00065//OS: wheat (Triticum aestivum) /GENE: Em/TFBS: Em1a /BF: EmBP-1 Motifs on "+" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 1 129 ACGTGGCTC 137 (Mism.= 1) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00920 Up.Conf.Int. 1 Found 1 128 tACGTGGC 135 (Mism.= 1) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00682 Up.Conf.Int. 1 Found 1 126 aAtACGTGGC 135 (Mism.= 2) TFBS AC: RSP00566//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: TATA P /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00480 Up.Conf.Int. 1 Found 1 40 CCTTGTATgT 49 (Mism.= 1) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00920 Up.Conf.Int. 1 Found 1 128 tACGTGGC 135 (Mism.= 1) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "-" Strand: Mean Exp. Number 0.00566 Up.Conf.Int. 1 Found 1 135 GCCACGTAtt 126 (Mism.= 2) TFBS AC: RSP00819//OS: arabidopsis (Arabidopsis thaliana) /GENE: F3H/TFBS: ACE-core (AtF3H) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00159 Up.Conf.Int. 1 Found 1 135 GCCACGTaTT 126 (Mism.= 1) TFBS AC: RSP00821//OS: arabidopsis (Arabidopsis thaliana) /GENE: FLS/TFBS: ACE-core (AtFLS) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 1 135 GCCACGTatT 126 (Mism.= 2) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00082 Up.Conf.Int. 1 Found 1 231 TTTATAATaTTTT 243 (Mism.= 1) TFBS AC: RSP01007//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 2 (AC-I) /BF: PtMYB1; PtMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00632 Up.Conf.Int. 1 Found 1 10 ACCTATC 16 (Mism.= 0) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 129 ACGTGGC 135 (Mism.= 0) TFBS AC: RSP01039//OS: parsley, Petroselinum crispum /GENE: Icy/TFBS: DOF BS1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00733 Up.Conf.Int. 1 Found 1 38 GAAAGG 33 (Mism.= 0) TFBS AC: RSP01076//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE III /BF: CpbZIP1; CpbZIP2 (short); Motifs on "+" Strand: Mean Exp. Number 0.00980 Up.Conf.Int. 1 Found 1 126 aATaCGTGGC 135 (Mism.= 2) TFBS AC: RSP01135//OS: melon (Cucumis melo) /GENE: Cucumisin/TFBS: I-box-like sequence /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 242 AAATATTATAAAA 230 (Mism.= 2) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00564 Up.Conf.Int. 1 Found 1 236 AATATTTTcTCaG 248 (Mism.= 2) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00724 Up.Conf.Int. 1 Found 1 127 ATACGTGG 134 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "+" Strand: Mean Exp. Number 0.00176 Up.Conf.Int. 1 Found 1 128 TACGTGGC 135 (Mism.= 1) TFBS AC: RSP01861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00957 Up.Conf.Int. 1 Found 1 128 TACGTGGC 135 (Mism.= 0) TFBS AC: RSP02089//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 171 ACATTATATA 162 (Mism.= 0) TFBS AC: RSP02296//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G/A-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00071 Up.Conf.Int. 1 Found 1 136 AGCCACGTAtTg 125 (Mism.= 2) TFBS AC: RSP02328//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 2 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 158 ACCAACT 152 (Mism.= 0) TFBS AC: RSP02420//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 33-36 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 42 AGGCGA 37 (Mism.= 0) TFBS AC: RSP02422//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 72-74 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00465 Up.Conf.Int. 1 Found 1 42 AGGCGA 37 (Mism.= 0) TFBS AC: RSP02590//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 158 ACCAACT 152 (Mism.= 0) TFBS AC: RSP02631//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR2/TFBS: EE /BF: RVE8 Motifs on "+" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 138 aAAAATATCTAAA 150 (Mism.= 1) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "+" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 129 ACGTGGC 135 (Mism.= 0) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "+" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 34 CTTTCgCC 41 (Mism.= 1) Totally 31 motifs of 31 different TFBSs have been found ____________________________________________________________ >PLPR0523..AC:AF264749.1..OS:Arabidopsis thaliana..GENE:RCI2B..PROD:hydrophobic protein RCI2B..[ -200: +51] ..CDS: +53 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.45 G - 0.16 T - 0.27 C - 0.12 TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 118 aCCACGTGGa 127 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00618 Up.Conf.Int. 1 Found 1 127 tCCACGTGGt 118 (Mism.= 2) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00502 Up.Conf.Int. 1 Found 1 119 CCACGTGGat 128 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 126 CCACGTGGtg 117 (Mism.= 2) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00502 Up.Conf.Int. 1 Found 1 119 CCACGTGGat 128 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 126 CCACGTGGtg 117 (Mism.= 2) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "+" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 120 CACGTGGa 127 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 125 CACGTGGt 118 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00717 Up.Conf.Int. 1 Found 1 118 aCCACGTGGA 127 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00404 Up.Conf.Int. 1 Found 1 127 tCCACGTGGt 118 (Mism.= 2) TFBS AC: RSP00718//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: G-box-1 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 119 CCACGTGG 126 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 126 CCACGTGG 119 (Mism.= 0) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 120 CACGTGGa 127 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00994 Up.Conf.Int. 1 Found 1 125 CACGTGGt 118 (Mism.= 1) TFBS AC: RSP00878//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Site I /BF: RPCF-1 Motifs on "-" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 126 CCAcGTGG 119 (Mism.= 1) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 127 TCCACGTGgt 118 (Mism.= 2) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "+" Strand: Mean Exp. Number 0.00367 Up.Conf.Int. 1 Found 1 119 CCACGTgG 126 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00579 Up.Conf.Int. 1 Found 1 126 CCACGTgG 119 (Mism.= 1) TFBS AC: RSP01192//OS: Tobacco; Nicotiana tabacum /GENE: Adh2/TFBS: D-box /BF: D factor Motifs on "+" Strand: Mean Exp. Number 0.00590 Up.Conf.Int. 1 Found 1 150 CTCGGGTCTA 159 (Mism.= 2) TFBS AC: RSP01195//OS: maize (Zea mays) /GENE: cab-ml/TFBS: Region II /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00758 Up.Conf.Int. 1 Found 1 221 AATATTTTcTtTG 233 (Mism.= 2) TFBS AC: RSP01221//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: GARE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 113 TAACCACC 120 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00797 Up.Conf.Int. 1 Found 2 155 gTCTATATAT 164 (Mism.= 1) 157 CTaTATATAT 166 (Mism.= 1) TFBS AC: RSP01254//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS1 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 119 CCACGTGG 126 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00438 Up.Conf.Int. 1 Found 1 126 CCACGTGG 119 (Mism.= 0) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00623 Up.Conf.Int. 1 Found 1 126 cCACGTGG 119 (Mism.= 1) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 119 CcACGTGG 126 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 126 CcACGTGG 119 (Mism.= 1) TFBS AC: RSP01281//OS: Fusarium solani f. sp, pisi (Nectria haematococca) /GENE: Cutinase/TFBS: Palindrome 1 /BF: PBP Motifs on "-" Strand: Mean Exp. Number 0.00016 Up.Conf.Int. 1 Found 1 136 ATGAGCCTATCC 125 (Mism.= 2) TFBS AC: RSP01449//OS: rice (Oryza sativa) /GENE: OsNAS1/TFBS: OsNAS1-OsIRO2-BS /BF: OsIRO2 Motifs on "-" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 1 127 TcCACGTGGTGGt 115 (Mism.= 2) TFBS AC: RSP01451//OS: rice (Oryza sativa) /GENE: MTN/TFBS: OsFDH-OsIRO2-BS /BF: OsIRO2 Motifs on "-" Strand: Mean Exp. Number 0.00002 Up.Conf.Int. 1 Found 1 127 TCCACGTGGTGGT 115 (Mism.= 1) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 236 TTTCAAAG 229 (Mism.= 0) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 127 TCCACGT 121 (Mism.= 0) TFBS AC: RSP01879//OS: tomato (Lycopersicon esculentum) /GENE: LeACO1/TFBS: LeHB-1 BS 1 /BF: LeHB-1 Motifs on "+" Strand: Mean Exp. Number 0.00970 Up.Conf.Int. 1 Found 1 217 AATAAATATT 226 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00174 Up.Conf.Int. 1 Found 1 119 CCACGTGGat 128 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00209 Up.Conf.Int. 1 Found 1 126 CCACGTGGtg 117 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 118 ACCACGTGga 127 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 118 AcCACGTGgA 127 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 118 aCCACGTGGa 127 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00242 Up.Conf.Int. 1 Found 1 127 TCCACGTGGt 118 (Mism.= 1) TFBS AC: RSP02219//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE2 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00607 Up.Conf.Int. 1 Found 1 119 CCACGTGG 126 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00607 Up.Conf.Int. 1 Found 1 126 CCACGTGG 119 (Mism.= 0) TFBS AC: RSP02313//OS: tobacco (Nicotiana tabacum) /GENE: PMT2/TFBS: G-box (PMT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00355 Up.Conf.Int. 1 Found 1 119 cCACGTGG 126 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 126 cCACGTGG 119 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 127 tCCACGTGgT 118 (Mism.= 2) TFBS AC: RSP02432//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHCB/TFBS: G-box /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 119 CCACGT 124 (Mism.= 0) TFBS AC: RSP02433//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBFA/TFBS: G-box /BF: ABI4 Motifs on "+" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 119 CCACGT 124 (Mism.= 0) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 118 acCACGTGGA 127 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 127 TcCACGTGgT 118 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00417 Up.Conf.Int. 1 Found 1 118 acCACGTGGA 127 (Mism.= 2) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "+" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 118 acCACGTGGA 127 (Mism.= 2) TFBS AC: RSP02621//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE4 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00823 Up.Conf.Int. 1 Found 1 120 CACGTGGa 127 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 125 CACGTGGT 118 (Mism.= 0) TFBS AC: RSP02740//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: [GBF1 + GIP1] Motifs on "+" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 1 119 CCACGTGG 126 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00024 Up.Conf.Int. 1 Found 1 126 CCACGTGG 119 (Mism.= 0) TFBS AC: RSP02804//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 124 ACGTGG 119 (Mism.= 0) TFBS AC: RSP02889//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH31/48/64/72/74/79/115 BS /BF: bHLH31, bHLH48, bHLH64, bHLH72, bHLH74, bHLH79, bHLH115 Motifs on "-" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 1 126 cCACGTGGtG 117 (Mism.= 2) TFBS AC: RSP02890//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH TFs BS /BF: bHLH TFs Motifs on "-" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 1 126 cCACGTGGtG 117 (Mism.= 2) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "+" Strand: Mean Exp. Number 0.00596 Up.Conf.Int. 1 Found 1 36 aTTTCCCC 43 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 118 AcCACGTGGa 127 (Mism.= 2) TFBS AC: RSP02921//OS: Medicago truncatula /GENE: CYP72a61v2/TFBS: G-box-like /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00395 Up.Conf.Int. 1 Found 1 127 tcCACGTGGT 118 (Mism.= 2) Totally 61 motifs of 44 different TFBSs have been found ____________________________________________________________ >PLPR0524..AC:M99429.1..OS:Ipomoea nil..GENE:shsp-1..PROD:small heat shock protein..[ -200: +51] ..CDS: +64..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.31 C - 0.24 TFBS AC: RSP00128//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 38 TtAAAAaAGTtAGTTA 53 (Mism.= 3) TFBS AC: RSP00208//OS: French bean (Phaseolus vulgaris) /GENE: DLEC2/TFBS: DLEC2,A /BF: MAT2 (ROM2) Motifs on "+" Strand: Mean Exp. Number 0.00183 Up.Conf.Int. 1 Found 1 202 atCACGTCAGCT 213 (Mism.= 2) TFBS AC: RSP00496//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: "2 TGAGCT" element /BF: ASF-1 (tobacco); OCSTF; Motifs on "+" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 190 TcAGCT 195 -- 9-- 205 ACGTCA 210 (Mism.= 1/ 0) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 152 AGAAAGGAA 144 (Mism.= 0) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 212 GCTGACGTGA 203 (Mism.= 1) TFBS AC: RSP00917//OS: maize (Zea mays) /GENE: b-32/TFBS: B5 /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 212 GcTGACGTGA 203 (Mism.= 1) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "+" Strand: Mean Exp. Number 0.00342 Up.Conf.Int. 1 Found 1 42 AAAAGTTAGTTA 53 (Mism.= 0) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00749 Up.Conf.Int. 1 Found 2 134 AGAAACTT 141 (Mism.= 0) 155 AGAAACTT 162 (Mism.= 0) TFBS AC: RSP01048//OS: arabidopsis (Arabidopsis thaliana) /GENE: CPC/TFBS: WBSI /BF: WER Motifs on "+" Strand: Mean Exp. Number 0.00026 Up.Conf.Int. 1 Found 1 37 TTTAAAAaAgtTAGTTAgGG 56 (Mism.= 4) TFBS AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00184 Up.Conf.Int. 1 Found 1 17 CCATTTTGGG 26 (Mism.= 1) TFBS AC: RSP01305//OS: tobacco (Nicotiana tabacum) /GENE: Thio h2/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00277 Up.Conf.Int. 1 Found 1 60 aCtACCCTAA 51 (Mism.= 2) TFBS AC: RSP01577//OS: potato, Solanum tuberosum /GENE: PAT21/TFBS: ICEr2 /BF: STK Motifs on "-" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 86 tCTAAACAAT 77 (Mism.= 1) TFBS AC: RSP01578//OS: potato, Solanum tuberosum /GENE: PS20/TFBS: ICEr2 /BF: STK-related protein Motifs on "-" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 86 tCTAAACAAT 77 (Mism.= 1) TFBS AC: RSP01579//OS: potato, Solanum tuberosum /GENE: B33/TFBS: ICEr2 /BF: STK-related protein Motifs on "-" Strand: Mean Exp. Number 0.00987 Up.Conf.Int. 1 Found 1 86 tCTAAACAAT 77 (Mism.= 1) TFBS AC: RSP01665//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF12 (At1g28360)/TFBS: C/A-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 212 GCTGACGTgATt 201 (Mism.= 2) TFBS AC: RSP01756//OS: soybean (Glycine max) /GENE: a2/TFBS: C1BS2 /BF: C1 Motifs on "-" Strand: Mean Exp. Number 0.00060 Up.Conf.Int. 1 Found 1 15 CCATCGAC 8 (Mism.= 0) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00552 Up.Conf.Int. 1 Found 1 17 CCATTTTgGG 26 (Mism.= 1) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 169 GAAGAAGAA 161 (Mism.= 0) TFBS AC: RSP02527//OS: rice (Oryza sativa, japonica) /GENE: LOG/TFBS: GTAC-motif /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 57 TAGTACTA 64 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00739 Up.Conf.Int. 1 Found 1 64 TAGTACTA 57 (Mism.= 0) TFBS AC: RSP02530//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 3 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00569 Up.Conf.Int. 1 Found 1 63 TAGTACAC 70 (Mism.= 0) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "-" Strand: Mean Exp. Number 0.00420 Up.Conf.Int. 1 Found 1 247 TTTGTgGTATT 237 (Mism.= 1) Totally 23 motifs of 21 different TFBSs have been found ____________________________________________________________ >PLPR0525..AC:AB007911.1..OS:Pisum sativum..GENE:PRA2..PROD:light-responsible GTP-binding protein..[ -200: +51] ..CDS: +197..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.43 G - 0.08 T - 0.30 C - 0.19 TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "+" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 45 TCAAAAATATcC 56 (Mism.= 1) TFBS AC: RSP00633//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CV /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 124 tTTGaTTAATAAT 136 (Mism.= 2) TFBS AC: RSP00749//OS: Catharanthus roseus /GENE: STR/TFBS: BN /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 22 ATTTTGTAATTA 33 (Mism.= 0) TFBS AC: RSP01032//OS: arabidopsis (Arabidopsis thaliana) /GENE: SOC1/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00154 Up.Conf.Int. 1 Found 1 220 CCAAATTAAG 211 (Mism.= 1) TFBS AC: RSP01166//OS: maize (Zea mays) /GENE: pMS1/TFBS: CCAAT box /BF: HMG proteins Motifs on "-" Strand: Mean Exp. Number 0.00523 Up.Conf.Int. 1 Found 1 54 ATaTTTTTGaAAATTg 39 (Mism.= 3) TFBS AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00633 Up.Conf.Int. 1 Found 1 211 CTTaaTTTGG 220 (Mism.= 2) TFBS AC: RSP01511//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: OLS /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 204 GCtGCATC 197 (Mism.= 1) TFBS AC: RSP01512//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: OLS /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00270 Up.Conf.Int. 1 Found 1 204 GCtGCATC 197 (Mism.= 1) TFBS AC: RSP01619//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E2 /BF: GmDof4; GmDosf16 Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 223 AaGcATTAAAGCG 235 (Mism.= 2) TFBS AC: RSP01632//OS: Arabidopsis (Arabidopsis thaliana) /GENE: At5g51890/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 233 CTTTAATGCTT 223 (Mism.= 2) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 233 CTTTAATGCTT 223 (Mism.= 2) TFBS AC: RSP02108//OS: Sesbania rostrata /GENE: Srglb3/TFBS: ATRE-BS2* /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 144 tTTaTTAgATTATTAATcAA 125 (Mism.= 4) TFBS AC: RSP02327//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 1 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00563 Up.Conf.Int. 1 Found 1 221 ACCAAAT 215 (Mism.= 0) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 222 tACCAAAT 215 (Mism.= 1) TFBS AC: RSP02750//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX14/TFBS: MYB46 BS (IRX14) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 222 TACCAAAT 215 (Mism.= 1) TFBS AC: RSP02761//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS1 (MYB58) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00825 Up.Conf.Int. 1 Found 1 222 TACCAAAT 215 (Mism.= 1) TFBS AC: RSP02765//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS3 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00241 Up.Conf.Int. 1 Found 1 222 TACCAAAT 215 (Mism.= 0) Totally 17 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0526..AC:X02727..OS:Glycine max..GENE:N-24..PROD:nodulin-24..[ -200: +51] ..CDS: +45..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.37 C - 0.16 TFBS AC: RSP00052//OS: rice (Oryza sativa) (Oryza sativa); /GENE: Rab-16A/TFBS: ABRE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00291 Up.Conf.Int. 1 Found 1 117 tTACcTGGCGC 107 (Mism.= 2) TFBS AC: RSP00156//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: D1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 83 TCaAaAGTTACTAaC 69 (Mism.= 3) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "+" Strand: Mean Exp. Number 0.00143 Up.Conf.Int. 1 Found 1 109 GCCAgGTAAG 118 (Mism.= 1) TFBS AC: RSP00270//OS: arabidopsis (Arabidopsis thaliana) /GENE: GST6/TFBS: OBP1 BS /BF: OBP1 Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 35 aACACTTTTGG 45 (Mism.= 1) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00314 Up.Conf.Int. 1 Found 1 202 AACAAACTCGATC 214 (Mism.= 1) TFBS AC: RSP01062//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: AACA motif /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 202 AACAAACTCGATC 214 (Mism.= 1) TFBS AC: RSP02515//OS: tomato (Solanum lycopersicum) /GENE: SlHsp21.5-ER/TFBS: HSE-1 (SlHsp21.5-ER) /BF: SlHsfA3 Motifs on "-" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 91 CaGAAtTTTCAA 80 (Mism.= 2) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0527..AC:AY052528.1..OS:Glycine max..GENE:SCaM-4..PROD:calmodulin isoform-4..[ -200: +51] ..CDS: +690..TSS:201 (+1) # Alternative TSS(s): +7 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.12 T - 0.35 C - 0.23 TFBS AC: RSP00556//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00081 Up.Conf.Int. 1 Found 1 128 GAAcAcGCAAAAGaAA 143 (Mism.= 3) TFBS AC: RSP00722//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: I-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00978 Up.Conf.Int. 1 Found 1 227 GATAAGA 233 (Mism.= 0) TFBS AC: RSP02707//OS: rice blast fungus (Magnaporthe oryzae) /GENE: COS1-dependent genes/TFBS: A4GA3-motif /BF: COS1 Motifs on "+" Strand: Mean Exp. Number 0.00620 Up.Conf.Int. 1 Found 1 136 AAAAGAAA 143 (Mism.= 0) TFBS AC: RSP02834//OS: soybean (Glycine max) /GENE: EPSPS/TFBS: GmZF1 BS /BF: GmZF1 Motifs on "+" Strand: Mean Exp. Number 0.00080 Up.Conf.Int. 1 Found 1 82 TGACAcTGTCA 92 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 92 TGACAGTGTCA 82 (Mism.= 0) Totally 5 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0528..AC:U20345.1..OS:Solanum tuberosum..GENE:UGPase..PROD:UDP-glucose pyrophosphorylase, UGPase-Lemhi10 allele..[ -200: +51] ..CDS: +85..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.12 T - 0.38 C - 0.23 TFBS AC: RSP00428//OS: pea, Pisum sativum /GENE: Synthetic oligonucleotides/TFBS: Myb1 /BF: Myb26; Myb-like DNA binding protein Motifs on "+" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 96 AAAgAACGGTTA 107 (Mism.= 1) TFBS AC: RSP00439//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: -624-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00634 Up.Conf.Int. 1 Found 1 146 ATATTCTT 139 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 152 CTATAAATA 144 (Mism.= 0) TFBS AC: RSP01814//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC2/TFBS: HD-ZIP BS /BF: HD-ZIP Motifs on "-" Strand: Mean Exp. Number 0.00454 Up.Conf.Int. 1 Found 1 57 GAAAAaTATTaTAG 44 (Mism.= 2) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0529..AC:L28831.1..OS:Glycine max..GENE:rps11..PROD:ribosomal protein S11..[ -200: +51] ..CDS: +85..TSS:201 (+1) # Alternative TSS(s): +3 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.16 T - 0.31 C - 0.19 TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 218 TTAGGGTTT 226 (Mism.= 0) TFBS AC: RSP00295//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CC", comp) /BF: At-TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 123 TGGGCT 128 --12-- 141 aGCCCA 146 (Mism.= 1/ 1) Motifs on "-" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 146 TGGGCT 141 --12-- 128 aGCCCA 123 (Mism.= 1/ 1) TFBS AC: RSP00296//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II ("CT", comp) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00057 Up.Conf.Int. 1 Found 1 123 TGGGCT 128 --12-- 141 AGCCCA 146 (Mism.= 0/ 0) Motifs on "-" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 146 TGGGCT 141 --12-- 128 AGCCCA 123 (Mism.= 0/ 0) TFBS AC: RSP00297//OS: arabidopsis (Arabidopsis thaliana) /GENE: PCNA/TFBS: Box II/telo-box (motifs 1 & 2) /BF: At-TCP20 ("TCP domain" transcription factor) Motifs on "+" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 123 TGGGCT 128 --12-- 141 aGCCCA 146 (Mism.= 1/ 1) Motifs on "-" Strand: Mean Exp. Number 0.00038 Up.Conf.Int. 1 Found 1 146 TGGGCT 141 --12-- 128 aGCCCA 123 (Mism.= 1/ 1) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 226 AAACCCTAA 218 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 218 TTAGGGTTT 226 (Mism.= 0) TFBS AC: RSP00874//OS: maize (Zea mays) /GENE: Synthetic oligonucleotids/TFBS: Dof3 BSopt /BF: Dof3 Motifs on "-" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 154 TTTTAAAGTGG 144 (Mism.= 0) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 231 CTCAaaAACCC 221 (Mism.= 2) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00703 Up.Conf.Int. 1 Found 1 227 aAAACCCTAA 218 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00649 Up.Conf.Int. 1 Found 1 227 aaAACCCTAA 218 (Mism.= 2) TFBS AC: RSP01810//OS: banana (Musa acuminata subgroup Cavendish, cv Giant governor) /GENE: SPS/TFBS: ERE /BF: 25 kDa unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 240 ACCGCCG 234 (Mism.= 0) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 226 AAACCCTA 219 (Mism.= 0) TFBS AC: RSP01892//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BCCP2/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 177 CAAAAGGAGCGTCTT 191 (Mism.= 2) TFBS AC: RSP01893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BCCP2/TFBS: SEF3 motif 1 /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 177 CAAAAGGAGCGTCTT 191 (Mism.= 2) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 219 TAGGGTTT 226 (Mism.= 0) TFBS AC: RSP02508//OS: rice (Oryza sativa, japonica) /GENE: D14/TFBS: CArG 1 /BF: [OsMADS57 + OsTB1] Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 147 CTTTAAAAAG 156 (Mism.= 0) TFBS AC: RSP02509//OS: rice (Oryza sativa, japonica) /GENE: D14/TFBS: CArG 2 /BF: [OsMADS57 + OsTB1] Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 147 CTTTAAAAAG 156 (Mism.= 1) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00097 Up.Conf.Int. 1 Found 1 226 AAACCCTAA 218 (Mism.= 0) Totally 21 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0530..AC:L28828.1..OS:Arabidopsis thaliana..GENE:rps11..PROD:ribosomal protein S11..[ -200: +51] ..CDS: +81..TSS:201 (+1) # Alternative TSS(s): +2 +5 +6 +9 +10 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.31 C - 0.21 TFBS AC: RSP00021//OS: Catharantus roseus /GENE: TDC/TFBS: GT-1#Box7 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00308 Up.Conf.Int. 1 Found 1 16 AAAAAGTAAAAc 27 (Mism.= 1) TFBS AC: RSP00260//OS: rice (Oryza sativa) /GENE: synthetic oligonucleotides/TFBS: RTBP1 BS /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 73 TTTAGGG 79 (Mism.= 0) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "+" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 192 TTAGGGTTT 200 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 200 AAACCCTAA 192 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 192 TTAGGGTTT 200 (Mism.= 0) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00298 Up.Conf.Int. 1 Found 1 26 TTTTaCTTTTTgTTTt 11 (Mism.= 3) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00576 Up.Conf.Int. 1 Found 1 201 aAAACCCTAA 192 (Mism.= 1) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00536 Up.Conf.Int. 1 Found 1 201 aaAACCCTAA 192 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 200 AAACCCTA 193 (Mism.= 0) TFBS AC: RSP02007//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB2/TFBS: W-box 3 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 53 tCAAGTCAAAGc 64 (Mism.= 2) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 193 TAGGGTTT 200 (Mism.= 0) TFBS AC: RSP02340//OS: potato (Solanum tuberosum) /GENE: YUCCAlc/TFBS: /BF: StBEL5 Motifs on "-" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 1 60 TGACTTGAC 52 (Mism.= 0) TFBS AC: RSP02468//OS: Arabidopsis (Arabidopsis thaliana) /GENE: WRKY53/TFBS: AAAT-region /BF: WHY1 Motifs on "-" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 83 AAATCCC 77 (Mism.= 0) TFBS AC: RSP02724//OS: rice (Oryza sativa) /GENE: OsYSL2/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 95 cCCAAGTATAg 85 (Mism.= 2) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 200 AAACCCTAA 192 (Mism.= 0) TFBS AC: RSP02895//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB TFs BS /BF: R2R3-MYB TFs Motifs on "-" Strand: Mean Exp. Number 0.00716 Up.Conf.Int. 1 Found 1 141 ACCACAAaC 133 (Mism.= 1) TFBS AC: RSP02971//OS: Arabidopsis (Arabidopsis thaliana) /GENE: protein/RNA genes/TFBS: TR /BF: TRB1 Motifs on "-" Strand: Mean Exp. Number 0.00855 Up.Conf.Int. 1 Found 1 79 CCCTAAA 73 (Mism.= 0) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "+" Strand: Mean Exp. Number 0.00269 Up.Conf.Int. 1 Found 1 134 TTTGTgGTATT 144 (Mism.= 1) Totally 18 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0531..AC:AJ512944.1..OS:Hordeum vulgare..GENE:cor14b (=COR14b-G1)..PROD:cold regulated protein..[ -200: +51] ..CDS: +103..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.20 G - 0.22 T - 0.15 C - 0.43 TFBS AC: RSP00035//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: D1 /BF: DOF Motifs on "+" Strand: Mean Exp. Number 0.00826 Up.Conf.Int. 1 Found 1 167 CAAAAGG 173 (Mism.= 0) TFBS AC: RSP00072//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: ACGT box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00507 Up.Conf.Int. 1 Found 1 128 GTACGTG 134 (Mism.= 0) TFBS AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: Z element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00586 Up.Conf.Int. 1 Found 1 229 GCtCATACGT 238 (Mism.= 1) TFBS AC: RSP00301//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: PROL box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00611 Up.Conf.Int. 1 Found 1 220 TGCAAAG 226 (Mism.= 0) TFBS AC: RSP00442//OS: maize /GENE: cyPPDK1/TFBS: box b /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00796 Up.Conf.Int. 1 Found 1 229 ctACTTTGCA 220 (Mism.= 2) TFBS AC: RSP00882//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: Pb 3 /BF: PBF Motifs on "+" Strand: Mean Exp. Number 0.00611 Up.Conf.Int. 1 Found 1 220 TGCAAAG 226 (Mism.= 0) TFBS AC: RSP01071//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1c /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00683 Up.Conf.Int. 1 Found 1 232 CAtACGTACA 241 (Mism.= 1) TFBS AC: RSP01153//OS: maize (Zea mays) /GENE: Em/TFBS: Em1c /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00392 Up.Conf.Int. 1 Found 1 232 CAtACGTACA 241 (Mism.= 1) TFBS AC: RSP01207//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: CL2 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 249 CCGATGGATGTA 238 (Mism.= 2) TFBS AC: RSP01212//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL2 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 249 CCGATGGATGTA 238 (Mism.= 2) TFBS AC: RSP01264//OS: rice (Oryza sativa) /GENE: rab 16D/TFBS: Motif I /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00005 Up.Conf.Int. 1 Found 1 124 GTACGTACGTGGaaCcC 140 (Mism.= 3) TFBS AC: RSP01276//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: Box III /BF: 2 unknown noncooperative nuclear factors Motifs on "+" Strand: Mean Exp. Number 0.00113 Up.Conf.Int. 1 Found 1 128 GTACGTGG 135 (Mism.= 0) TFBS AC: RSP01529//OS: pea (Pisum sativum) /GENE: PsCHS3/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 230 GCTACtTTgCA 220 (Mism.= 2) TFBS AC: RSP01530//OS: pea (Pisum sativum) /GENE: PsCHS4/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 230 GCTACtTTgCA 220 (Mism.= 2) TFBS AC: RSP01531//OS: pea (Pisum sativum) /GENE: PsCHS5/TFBS: Box I /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00839 Up.Conf.Int. 1 Found 1 230 GCTACtTTgCA 220 (Mism.= 2) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 136 TCCACGT 130 (Mism.= 0) TFBS AC: RSP01895//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PKp-beta1/TFBS: SEF3 motif 2 /BF: WRI1 Motifs on "-" Strand: Mean Exp. Number 0.00042 Up.Conf.Int. 1 Found 1 181 AGCGCCGGCCTTTTG 167 (Mism.= 3) TFBS AC: RSP01978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(P) /BF: EIN3/EIL1 Motifs on "-" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 246 ATGGATGT 239 (Mism.= 1) TFBS AC: RSP02410//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS3 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00972 Up.Conf.Int. 1 Found 1 229 cTACTTTG 222 (Mism.= 1) TFBS AC: RSP02974//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABI2/TFBS: O-box (ABI2) /BF: ORA47 Motifs on "+" Strand: Mean Exp. Number 0.00194 Up.Conf.Int. 1 Found 1 75 TTGTCGACCAcc 86 (Mism.= 2) Totally 20 motifs of 20 different TFBSs have been found ____________________________________________________________ >PLPR0532..AC:AF099203.1..OS:Oryza sativa..GENE:EP3A..PROD:cysteine endopeptidase precursor..[ -200: +51] ..CDS: +123..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.14 T - 0.25 C - 0.39 TFBS AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: AT-rich motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 136 TTTAAAT 130 (Mism.= 0) TFBS AC: RSP00180//OS: barley (Hordeum vulgare) /GENE: EPB-1/TFBS: GARE-4 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00588 Up.Conf.Int. 1 Found 1 125 GTAACAGAAaGaTGc 111 (Mism.= 3) TFBS AC: RSP00354//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00117 Up.Conf.Int. 1 Found 1 58 TAACGTAG 65 (Mism.= 0) TFBS AC: RSP00355//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: GARE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 124 TAACAGAA 117 (Mism.= 0) TFBS AC: RSP00695//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 167 TATAAAT 173 (Mism.= 0) TFBS AC: RSP01004//OS: snapdragon (Antirrhinum majus) /GENE: DEFH125/TFBS: CArG2 /BF: DEF/GLO Motifs on "-" Strand: Mean Exp. Number 0.00704 Up.Conf.Int. 1 Found 1 137 AtTTAAATGG 128 (Mism.= 1) TFBS AC: RSP01025//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: R2 /BF: unknown BF Motifs on "+" Strand: Mean Exp. Number 0.00868 Up.Conf.Int. 1 Found 1 18 AGAATCT 24 (Mism.= 0) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 18 AGAATCTT 25 (Mism.= 1) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 18 AGAATCTT 25 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00077 Up.Conf.Int. 1 Found 1 166 CTATAAATA 174 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00928 Up.Conf.Int. 1 Found 1 166 CTATAAATAC 175 (Mism.= 0) TFBS AC: RSP01714//OS: Arabidopsis (Arabidopsis thaliana) /GENE: REH1/PIN3 (At1g70940)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 181 GGagACGTATTT 170 (Mism.= 2) TFBS AC: RSP01868//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: GARP BS 1 /BF: GARP transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00917 Up.Conf.Int. 1 Found 1 18 AGAATCTTc 26 (Mism.= 1) TFBS AC: RSP02738//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: LOB BS /BF: LOB Motifs on "-" Strand: Mean Exp. Number 0.00405 Up.Conf.Int. 1 Found 1 158 TTGCGGCGGGA 148 (Mism.= 0) TFBS AC: RSP02766//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ATAF1 BS /BF: ATAF1 Motifs on "+" Strand: Mean Exp. Number 0.00741 Up.Conf.Int. 1 Found 1 39 AACTCACGTA 48 (Mism.= 2) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 167 TATAAATA 174 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00919 Up.Conf.Int. 1 Found 1 66 GCtACGTtAGC 56 (Mism.= 2) TFBS AC: RSP02953//OS: maize (Zea mays) /GENE: SHR2/TFBS: E2F1 BS /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00929 Up.Conf.Int. 1 Found 1 148 TCCCGCcGCA 157 (Mism.= 1) Totally 19 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0533..AC:M81603.1..OS:Zea mays..GENE:shrunken-2..PROD:ADP glucose pyrophosphorylase..[ -200: +51] ..CDS: +525..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.27 G - 0.16 T - 0.31 C - 0.26 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 179 TGTGtTTATATA 168 (Mism.= 1) TFBS AC: RSP00201//OS: maize (Zea mays) /GENE: rab17/TFBS: GRA /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 225 CACTtGCCtCCC 214 (Mism.= 2) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00450 Up.Conf.Int. 1 Found 1 123 ATCAACAACC 114 (Mism.= 0) TFBS AC: RSP01604//OS: sweet potato (Ipomoea batatas) /GENE: Sporamin; beta-amylase/TFBS: SP8a /BF: SPF1 Motifs on "-" Strand: Mean Exp. Number 0.00500 Up.Conf.Int. 1 Found 1 136 ACTGTGTA 129 (Mism.= 0) TFBS AC: RSP02710//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AmidP (At4g34880)/TFBS: DOF2 domain 2 /BF: DOF2 Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 70 ATGaAAAGGAG 60 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0534..AC:M76981.1..OS:Glycine max..GENE:vspA..PROD:vegetative storage protein..[ -200: +51] ..CDS: +44..TSS:201 (+1) # Alternative TSS(s): -2 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.44 G - 0.18 T - 0.27 C - 0.12 TFBS AC: RSP00011//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: C2b-BS /BF: root-sprcific nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00741 Up.Conf.Int. 1 Found 1 180 GCAAATCCTC 189 (Mism.= 2) TFBS AC: RSP00097//OS: maize (Zea mays) /GENE: GapC4/TFBS: 9-mer box /BF: tobacco nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00056 Up.Conf.Int. 1 Found 1 105 ACGGTCCA 98 (Mism.= 0) TFBS AC: RSP00881//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: M2 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00505 Up.Conf.Int. 1 Found 1 221 ATCAACAAaC 212 (Mism.= 1) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00721 Up.Conf.Int. 1 Found 1 220 tCAACAAACTCa 209 (Mism.= 2) TFBS AC: RSP01527//OS: pea (Pisum sativum) /GENE: PsCHS2/TFBS: Box II /BF:unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00066 Up.Conf.Int. 1 Found 1 220 TCAACAAACTCA 209 (Mism.= 0) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00760 Up.Conf.Int. 1 Found 1 162 TaTTGTCTaT 171 (Mism.= 2) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0535..AC:U81996.1..OS:Lycopersicon esculentum..GENE:le16..PROD:non specific lipid transfer protein protein..[ -200: +51] ..CDS: +59..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.10 T - 0.36 C - 0.20 TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00240 Up.Conf.Int. 1 Found 1 168 AGAGAGGAA 160 (Mism.= 0) TFBS AC: RSP01006//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 1 (AC-II) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00943 Up.Conf.Int. 1 Found 1 59 ACCACGC 53 (Mism.= 1) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00204 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01725//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00477 Up.Conf.Int. 1 Found 1 72 AGtCACGTAAcA 83 (Mism.= 2) TFBS AC: RSP01834//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: Site II element /BF: TCP domain protein Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 33 TGGGCC 38 (Mism.= 0) TFBS AC: RSP01908//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: Site II element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 33 TGGGCC 38 (Mism.= 0) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 46 CGATTTAAGG 37 (Mism.= 1) TFBS AC: RSP02284//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: SITE II (-128) /BF: unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 39 aGGCCCA 33 (Mism.= 1) TFBS AC: RSP02296//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00197 Up.Conf.Int. 1 Found 1 72 AGtCACGTAAcA 83 (Mism.= 2) TFBS AC: RSP02526//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00959 Up.Conf.Int. 1 Found 1 215 TTGTACTA 222 (Mism.= 0) TFBS AC: RSP02529//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00959 Up.Conf.Int. 1 Found 1 215 TTGTACTA 222 (Mism.= 0) TFBS AC: RSP02533//OS: rice (Oryza sativa, japonica) /GENE: Synthetic oligonucleotides/TFBS: TGGGCC/T-motif /BF: OsTB1 Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 33 TGGGCC 38 (Mism.= 0) TFBS AC: RSP02534//OS: rice (Oryza sativa, japonica) /GENE: Synthetic oligonucleotides/TFBS: TGGGCC/T-motif /BF: [IPA1 + PCF1 + PCF2] Motifs on "+" Strand: Mean Exp. Number 0.00986 Up.Conf.Int. 1 Found 1 33 TGGGCC 38 (Mism.= 0) TFBS AC: RSP02620//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE3 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "-" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 80 tACGTGAC 73 (Mism.= 1) TFBS AC: RSP02758//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS1 (CCR1) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 190 CACCTAAC 197 (Mism.= 0) TFBS AC: RSP02858//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 33 TGGGCC 38 (Mism.= 0) TFBS AC: RSP02894//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: R2R3-MYB BS /BF: R2R3-MYB TFs Motifs on "+" Strand: Mean Exp. Number 0.00541 Up.Conf.Int. 1 Found 1 190 CACCTAAC 197 (Mism.= 0) Totally 18 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0536..AC:M97285.1..OS:Glycine max..GENE:GmPM9..PROD:16 kDa seed maturation protein..[ -200: +51] ..CDS: +49..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.24 T - 0.24 C - 0.20 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 26 ACACGTGGC 18 (Mism.= 0) TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "-" Strand: Mean Exp. Number 0.00061 Up.Conf.Int. 1 Found 2 121 GtACGCGTGGC 111 (Mism.= 1) 28 GGACaCGTGGC 18 (Mism.= 1) TFBS AC: RSP00049//OS: barley (Hordeum vulgare) /GENE: HVA22/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 137 CaCACGTGTC 128 (Mism.= 1) TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 18 GCCACgTGTC 27 (Mism.= 1) TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00274 Up.Conf.Int. 1 Found 1 68 GCCGCGTGtC 59 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 18 GCCACGTGtC 27 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 27 GaCACGTGGC 18 (Mism.= 1) TFBS AC: RSP00089//OS: Chlamydomonas reinhardtii /GENE: Nia1/TFBS: ARE 231/219 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 171 TGGTAGcaTGCG 182 (Mism.= 2) TFBS AC: RSP00143//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: CE3 /BF: TRAB1 Motifs on "-" Strand: Mean Exp. Number 0.00431 Up.Conf.Int. 1 Found 1 68 GcCGCGTGTC 59 (Mism.= 1) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 19 CCACGTGtCC 28 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 19 CCACGTGtCC 28 (Mism.= 1) TFBS AC: RSP00170//OS: soybean (Glycine max) /GENE: lbc3/TFBS: Element 2 /BF: nodule specific factor Motifs on "+" Strand: Mean Exp. Number 0.00153 Up.Conf.Int. 1 Found 1 156 CTaAAtcTATTTATTT 171 (Mism.= 3) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 25 CACGTGGC 18 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 27 GACACGTGGC 18 (Mism.= 0) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 58 aGACACGcGGCA 69 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 28 gGACACGTGGCA 17 (Mism.= 1) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 18 gCCACGTGTC 27 (Mism.= 1) TFBS AC: RSP00444//OS: maize /GENE: cyPPDK1/TFBS: box d /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00127 Up.Conf.Int. 1 Found 1 218 AAcAAAGAAAGgAA 231 (Mism.= 2) TFBS AC: RSP00600//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: TSS N /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 29 cTAaCACTGTGT 40 (Mism.= 2) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00196 Up.Conf.Int. 1 Found 1 25 CACGTGGC 18 (Mism.= 0) TFBS AC: RSP00862//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-3 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00384 Up.Conf.Int. 1 Found 1 223 AGAAAGGAA 231 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 17 TGCCACGTGTCc 28 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 69 TGCCgCGTGTCt 58 (Mism.= 2) TFBS AC: RSP00961//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: PB1 /BF: BPBF Motifs on "+" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 136 TGCAAAAG 143 (Mism.= 0) TFBS AC: RSP00964//OS: snapdragon (Antirrhinum majus) /GENE: chs/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 18 GcCACGTGtC 27 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00873 Up.Conf.Int. 1 Found 1 18 gCCACGTGTC 27 (Mism.= 1) TFBS AC: RSP00985//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: P-box /BF: PBP (Myb305) Motifs on "-" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 213 AcTTAGGTTC 204 (Mism.= 1) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "+" Strand: Mean Exp. Number 0.00744 Up.Conf.Int. 1 Found 1 103 AGAAACTT 110 (Mism.= 0) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 24 ACGTGGC 18 (Mism.= 0) TFBS AC: RSP01072//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Em1d /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00700 Up.Conf.Int. 1 Found 1 70 ATTACGTGTa 79 (Mism.= 1) TFBS AC: RSP01122//OS: tomato (Lycopersicon esculentum) /GENE: Synthetic oligonucleotides/TFBS: RBSS5 /BF: ABZ1 Motifs on "-" Strand: Mean Exp. Number 0.00021 Up.Conf.Int. 1 Found 1 139 TGCACACGTGTCag 126 (Mism.= 2) TFBS AC: RSP01154//OS: maize (Zea mays) /GENE: Em/TFBS: Em1d /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00423 Up.Conf.Int. 1 Found 1 70 ATTACGTGTa 79 (Mism.= 1) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00173 Up.Conf.Int. 1 Found 1 27 GACACGTGGC 18 (Mism.= 0) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00273 Up.Conf.Int. 1 Found 1 137 CACACGTGTC 128 (Mism.= 1) TFBS AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/TFBS: NIT2 BS II /BF: NIT2 Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 41 TGAAGCTC 48 (Mism.= 0) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 26 ACACGTGG 19 (Mism.= 0) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 129 ACACGTGT 136 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 136 ACACGTGT 129 (Mism.= 0) TFBS AC: RSP01261//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS8 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00286 Up.Conf.Int. 1 Found 1 71 TTACGTGT 78 (Mism.= 0) TFBS AC: RSP01550//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE3a/3b /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 72 TACGTGTAaGaC 83 (Mism.= 2) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 25 CACGTGGC 18 (Mism.= 0) TFBS AC: RSP01593//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00030 Up.Conf.Int. 1 Found 1 27 gACACGTGGCAa 16 (Mism.= 2) TFBS AC: RSP01600//OS: spinach (Spinacia oleracea) /GENE: RPS22/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 248 TTTCAAAG 241 (Mism.= 0) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00442 Up.Conf.Int. 1 Found 1 138 GcACACGTGTcA 127 (Mism.= 2) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 127 TgACACGTGTGc 138 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 138 gCACACGTGTcA 127 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 2 18 GCCACGTGTC 27 (Mism.= 0) 128 GaCACGTGTg 137 (Mism.= 2) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "+" Strand: Mean Exp. Number 0.00505 Up.Conf.Int. 1 Found 1 18 GCCAcGTGTC 27 (Mism.= 1) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 80 TTACACGTaATT 69 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 2 18 GcCACGTGTC 27 (Mism.= 1) 128 GACACGTGTg 137 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 2 137 cACACGTGTC 128 (Mism.= 1) 27 GACACGTGgC 18 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "-" Strand: Mean Exp. Number 0.00178 Up.Conf.Int. 1 Found 1 28 gGACACGTGGCA 17 (Mism.= 1) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 19 CCACGTGtCC 28 (Mism.= 1) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00183 Up.Conf.Int. 1 Found 1 18 gCCACGTGTC 27 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "+" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 128 GACACGTG 135 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 27 GACACGTG 20 (Mism.= 0) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00866 Up.Conf.Int. 1 Found 1 18 gCCACGTGtC 27 (Mism.= 2) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "-" Strand: Mean Exp. Number 0.00412 Up.Conf.Int. 1 Found 1 137 CACACGTGTC 128 (Mism.= 1) TFBS AC: RSP02250//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC1/TFBS: ABRE /BF: ABA-dependent transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00046 Up.Conf.Int. 1 Found 1 27 GACACGTGGC 18 (Mism.= 1) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "-" Strand: Mean Exp. Number 0.00047 Up.Conf.Int. 1 Found 1 26 ACACGTGGC 18 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "-" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 138 gcACACGTGTCA 127 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 129 ACACGTGT 136 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 136 ACACGTGT 129 (Mism.= 0) TFBS AC: RSP02389//OS: maize (Zea mays) /GENE: GRMZM2G181358_T01/TFBS: LBD motif (GRMZM2G181358_T01) /BF: RTCS Motifs on "+" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 147 GCGCCGCa 154 (Mism.= 1) TFBS AC: RSP02391//OS: maize (Zea mays) /GENE: GRMZM2G132509_T01/TFBS: LBD motif (GRMZM2G132509_T01) /BF: RTCS Motifs on "+" Strand: Mean Exp. Number 0.00887 Up.Conf.Int. 1 Found 1 147 GCGCCGCa 154 (Mism.= 1) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 2 18 GCCACGTGTc 27 (Mism.= 1) 128 GaCACGTGTg 137 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00873 Up.Conf.Int. 1 Found 1 27 GACACGTGGc 18 (Mism.= 1) TFBS AC: RSP02447//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: HB05/HB12 BS2 /BF: HB05; HB12 Motifs on "-" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 238 CAATTATTT 230 (Mism.= 0) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 137 CACACGTGTC 128 (Mism.= 0) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00873 Up.Conf.Int. 1 Found 1 27 GACACGTGGc 18 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 128 GACACGTGTg 137 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00175 Up.Conf.Int. 1 Found 1 27 GACACGTGGc 18 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00199 Up.Conf.Int. 1 Found 1 20 CACGTGTC 27 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 135 CACGTGTC 128 (Mism.= 0) TFBS AC: RSP02765//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS3 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 175 TACCAAAT 168 (Mism.= 0) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 24 ACGTGGC 18 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 2 137 cACACGTGtC 128 (Mism.= 2) 27 GACACGTGgC 18 (Mism.= 1) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00933 Up.Conf.Int. 1 Found 2 137 cACACGTGtC 128 (Mism.= 2) 27 gACACGTGGC 18 (Mism.= 1) TFBS AC: RSP02902//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL3 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00290 Up.Conf.Int. 1 Found 1 137 CAcACGTGTC 128 (Mism.= 1) TFBS AC: RSP02924//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "+" Strand: Mean Exp. Number 0.00606 Up.Conf.Int. 1 Found 1 1 TGCACGAGTg 10 (Mism.= 1) TFBS AC: RSP02955//OS: maize (Zea mays) /GENE: FIP1/TFBS: WRI1 BS /BF: WRI1 Motifs on "+" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 148 CGCCGCaCC 156 (Mism.= 1) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "+" Strand: Mean Exp. Number 0.00905 Up.Conf.Int. 1 Found 1 103 AGAAACTTgC 112 (Mism.= 1) Totally 89 motifs of 73 different TFBSs have been found ____________________________________________________________ >PLPR0537..AC:M76546.1..OS:Helianthus annuus..GENE:HaHX3..PROD:hydroxyproline-rich protein..[ -200: +51] ..CDS: +47..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.15 T - 0.35 C - 0.12 TFBS AC: RSP00914//OS: maize (Zea mays) /GENE: b-32/TFBS: B2 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00389 Up.Conf.Int. 1 Found 1 195 GATGATATGT 204 (Mism.= 1) TFBS AC: RSP01762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC13 (At1g32870)/TFBS: UVBox (ANAC13) /BF: NSP1 Motifs on "-" Strand: Mean Exp. Number 0.00897 Up.Conf.Int. 1 Found 1 55 CCAAGG 50 (Mism.= 0) TFBS AC: RSP01814//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtSUC2/TFBS: HD-ZIP BS /BF: HD-ZIP Motifs on "-" Strand: Mean Exp. Number 0.00574 Up.Conf.Int. 1 Found 1 122 GAAAATTATTCTAc 109 (Mism.= 1) TFBS AC: RSP02762//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB58/TFBS: MYB46 BS2 (MYB58) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 111 TACCAACT 104 (Mism.= 0) TFBS AC: RSP02763//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MYB63/TFBS: MYB46 BS1 (MYB63) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00510 Up.Conf.Int. 1 Found 1 111 TACCAACT 104 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0538..AC:M86213.1..OS:Gossypium hirsutum..GENE:Mat5-A..PROD:2S albumin storage protein..[ -200: +51] ..CDS: +46..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.29 C - 0.27 TFBS AC: RSP00077//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: AC-III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00936 Up.Conf.Int. 1 Found 1 111 GTTAGGTTt 119 (Mism.= 1) TFBS AC: RSP00107//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00722 Up.Conf.Int. 1 Found 1 93 CATGCAA 87 (Mism.= 0) TFBS AC: RSP00301//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: PROL box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 148 TGCAAAG 154 (Mism.= 0) TFBS AC: RSP00882//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: Pb 3 /BF: PBF Motifs on "+" Strand: Mean Exp. Number 0.00865 Up.Conf.Int. 1 Found 1 148 TGCAAAG 154 (Mism.= 0) TFBS AC: RSP00892//OS: Solanum melongena /GENE: SmCP/TFBS: EE 2 /BF: Dof factors Motifs on "-" Strand: Mean Exp. Number 0.00252 Up.Conf.Int. 1 Found 1 10 TTAATATCT 2 (Mism.= 0) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 135 CACGTa 140 -- 5-- 146 CATGCA 151 (Mism.= 1/ 0) TFBS AC: RSP01008//OS: pine (Pinus sylvestris) /GENE: PsGS1b/TFBS: GS1b AC box 3 (AC-III) /BF: PtMYB1; PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 117 ACCTAAC 111 (Mism.= 0) TFBS AC: RSP01078//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L0 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00286 Up.Conf.Int. 1 Found 1 59 ATAACCAaCCAA 70 (Mism.= 1) TFBS AC: RSP01260//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS7 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00192 Up.Conf.Int. 1 Found 1 105 CTACGTGT 112 (Mism.= 0) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00587 Up.Conf.Int. 1 Found 1 141 ATACGTGT 134 (Mism.= 0) TFBS AC: RSP01455//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-III /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 117 ACCTAAC 111 (Mism.= 0) TFBS AC: RSP01702//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XERO2/TFBS: ACGT1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00821 Up.Conf.Int. 1 Found 1 133 CACACGTATT 142 (Mism.= 1) TFBS AC: RSP01948//OS: tobacco (Nicotiana tabacum) /GENE: UP9C/TFBS: UPE-box (TV2) /BF: NtEIL2; AtSLIM1 Motifs on "-" Strand: Mean Exp. Number 0.00790 Up.Conf.Int. 1 Found 1 159 TGAACCT 153 (Mism.= 0) TFBS AC: RSP02019//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBb /BF: MYB Motifs on "+" Strand: Mean Exp. Number 0.00551 Up.Conf.Int. 1 Found 1 111 GTTAGGTT 118 (Mism.= 1) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00656 Up.Conf.Int. 1 Found 1 133 CACACGTATt 142 (Mism.= 1) TFBS AC: RSP02195//OS: tomato (Lycopersicon esculentum) /GENE: TBG4/TFBS: CArG (TBG4-b) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00493 Up.Conf.Int. 1 Found 1 42 CCAGTTAAGG 51 (Mism.= 1) TFBS AC: RSP02216//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: ACE1 (FHY1) /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00192 Up.Conf.Int. 1 Found 1 112 ACACGTAG 105 (Mism.= 0) TFBS AC: RSP02253//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Ep5C/TFBS: MBSII /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 111 GTTAGGT 117 (Mism.= 0) TFBS AC: RSP02287//OS: pea (Pisum sativum) /GENE: TRX f/TFBS: EE (TRX f) /BF: CCA1 Motifs on "+" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 1 GAGATATT 8 (Mism.= 0) TFBS AC: RSP02333//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 7 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 117 ACCTAAC 111 (Mism.= 0) TFBS AC: RSP02758//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS1 (CCR1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00748 Up.Conf.Int. 1 Found 1 118 aACCTAAC 111 (Mism.= 1) TFBS AC: RSP02813//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 2 (EgCAD) /BF: EgMYB2 Motifs on "+" Strand: Mean Exp. Number 0.00551 Up.Conf.Int. 1 Found 1 111 GTTAGGTT 118 (Mism.= 1) TFBS AC: RSP02905//OS: rice (Oryza sativa) /GENE: Os02t0467500/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00312 Up.Conf.Int. 1 Found 1 117 ACCTAAC 111 (Mism.= 0) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00712 Up.Conf.Int. 1 Found 1 207 CTCATcTGAT 216 (Mism.= 1) Totally 24 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0539..AC:M85261.1..OS:Gossypium hirsutum..GENE:Lea4-D9..PROD:putative desiccation protectant protein..[ -200: +51] ..CDS: +70..TSS:201 (+1) # Alternative TSS(s): +2 +5 +6 |Taxon: Dicot |Promote Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.13 T - 0.26 C - 0.30 TFBS AC: RSP00015//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtCDC6/TFBS: E2F1-BE /BF: E2F1 Motifs on "+" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 184 TTTCCCGC 191 (Mism.= 0) TFBS AC: RSP00050//OS: barley (Hordeum vulgare) /GENE: HVA1 gene/TFBS: Ce3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 52 ACtCGTGTCaTC 63 (Mism.= 2) TFBS AC: RSP00153//OS: Parsley, Petroselinum crispum /GENE: CHS/TFBS: Box II /BF: CPRF-1; CPRF-2; CPRF-3; Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 115 CCACGTcGCC 124 (Mism.= 1) TFBS AC: RSP00154//OS: parsley (Petroselinum crispum) /GENE: CHS/TFBS: ACE (CHS) /BF: bZIP factors CPRF1, CPRF4 Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 115 CCACGTcGCC 124 (Mism.= 1) TFBS AC: RSP00165//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: E2Fa /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 184 TTTCCCGC 191 (Mism.= 0) TFBS AC: RSP00247//OS: rice (Oryza sativa), Oryza sativa /GENE: alpha-globulin/TFBS: REB1 /BF: REB Motifs on "-" Strand: Mean Exp. Number 0.00306 Up.Conf.Int. 1 Found 1 91 tCCACGTAAG 82 (Mism.= 1) TFBS AC: RSP00298//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-1 /BF: E2F Motifs on "+" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 184 TTTCCCGC 191 (Mism.= 0) TFBS AC: RSP00395//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: O2-like-box /BF: Opaque-1, b-ZIP transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 83 TTACGTgGAT 92 (Mism.= 1) TFBS AC: RSP00566//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: TATA P /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00811 Up.Conf.Int. 1 Found 1 182 gCTTGTATAT 173 (Mism.= 1) TFBS AC: RSP00691//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: Box II /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 82 CTTaCGTGgAtCACA 96 (Mism.= 3) TFBS AC: RSP00738//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CUF-1 BS /BF: CUF-1 Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 91 tCCACGTAAG 82 (Mism.= 1) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "+" Strand: Mean Exp. Number 0.00271 Up.Conf.Int. 1 Found 1 115 CCACGTCG 122 (Mism.= 0) TFBS AC: RSP01257//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS4 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 83 TtACGTGG 90 (Mism.= 1) TFBS AC: RSP01267//OS: cotton (Gossypium hirsutum) /GENE: D-19/TFBS: Motif I /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00000 Up.Conf.Int. 1 Found 1 78 TGTGCTTACGTGGATCAC 95 (Mism.= 0) TFBS AC: RSP01474//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: G-box /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00775 Up.Conf.Int. 1 Found 1 83 TtACGTGG 90 (Mism.= 1) TFBS AC: RSP01621//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: E4 /BF: GmDof4; GmDof22 Motifs on "-" Strand: Mean Exp. Number 0.00489 Up.Conf.Int. 1 Found 1 26 TAaACTTTTG 17 (Mism.= 1) TFBS AC: RSP01734//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CBF2/TFBS: CM4 /BF: CAMTA3 Motifs on "-" Strand: Mean Exp. Number 0.00416 Up.Conf.Int. 1 Found 1 91 TCCACGT 85 (Mism.= 0) TFBS AC: RSP01943//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Hex /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 82 CTtACGTGGa 91 (Mism.= 2) TFBS AC: RSP02318//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CENH3/TFBS: E2F BS /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00444 Up.Conf.Int. 1 Found 1 191 GCGGGAAA 184 (Mism.= 0) TFBS AC: RSP02409//OS: Arabidopsis (Arabidopsis thaliana /GENE: PIF3/TFBS: EBS2 /BF: EIN3 Motifs on "-" Strand: Mean Exp. Number 0.00852 Up.Conf.Int. 1 Found 1 11 CACTTTA 5 (Mism.= 0) TFBS AC: RSP02893//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC TF BS /BF: NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00565 Up.Conf.Int. 1 Found 1 91 tCCACGTaAGC 81 (Mism.= 2) TFBS AC: RSP02924//OS: Medicago truncatula /GENE: CYP72A67/TFBS: N-box /BF: TSAR2 Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 60 gACACGAGTA 51 (Mism.= 1) TFBS AC: RSP02925//OS: Medicago truncatula /GENE: UGT73K1/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00863 Up.Conf.Int. 1 Found 1 60 gaCACGAGTA 51 (Mism.= 2) TFBS AC: RSP02927//OS: Medicago truncatula /GENE: UGT73F3/TFBS: N-box /BF: TSAR1 Motifs on "-" Strand: Mean Exp. Number 0.00598 Up.Conf.Int. 1 Found 1 60 GACACGAGtA 51 (Mism.= 1) Totally 24 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0540..AC:M38053.1..OS:Gossypium hirsutum..GENE:LEA2..PROD:embryogensis abundant protein gene..[ -200: +51] ..CDS: +100..TSS:201 (+1) # Alternative TSS(s): +2 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.18 T - 0.34 C - 0.27 TFBS AC: RSP00044//OS: wheat (Triticum aestivum) /GENE: H3/TFBS: hex3 /BF: ASF1 (activating sequence factor 1); hex-1-spesific binding factor of toba Motifs on "+" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 1 6 GGACtCGTGtC 16 (Mism.= 2) TFBS AC: RSP00070//OS: rice (Oryza sativa) /GENE: Osem/TFBS: ABRE motif A /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00455 Up.Conf.Int. 1 Found 1 115 TACGTGTC 122 (Mism.= 0) TFBS AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: GC-rich motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 98 CGCCGCG 104 (Mism.= 0) TFBS AC: RSP00143//OS: rice (Oryza sativa), Oryza sativa /GENE: Osem/TFBS: CE3 /BF: TRAB1 Motifs on "+" Strand: Mean Exp. Number 0.00388 Up.Conf.Int. 1 Found 1 7 GACtCGTGTC 16 (Mism.= 1) TFBS AC: RSP01154//OS: maize (Zea mays) /GENE: Em/TFBS: Em1d /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 113 ATTACGTGTc 122 (Mism.= 1) TFBS AC: RSP01261//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS8 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00577 Up.Conf.Int. 1 Found 1 114 TTACGTGT 121 (Mism.= 0) TFBS AC: RSP02317//OS: Arabidopsis (Arabidopsis thaliana) /GENE: DREB2A/TFBS: ABRE /BF: AREB/ABF Motifs on "-" Strand: Mean Exp. Number 0.00455 Up.Conf.Int. 1 Found 1 122 GACACGTA 115 (Mism.= 0) TFBS AC: RSP02674//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: ABRE /BF: Unknown ABRE binding factor Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 212 GAATtCACctGGTGT 226 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00339 Up.Conf.Int. 1 Found 1 111 GAATAaACGCGGcGa 97 (Mism.= 3) Totally 9 motifs of 8 different TFBSs have been found ____________________________________________________________ >PLPR0541..AC:M25268.1..OS:Arabidopsis thaliana..GENE:dbp..PROD:DNA-binding protein..[ -200: +51] ..CDS: +52..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.17 T - 0.26 C - 0.22 TFBS AC: RSP00043//OS: rice (Oryza sativa) (Oryza sativa) /GENE: rab16A-D/TFBS: Motif I core /BF: TAF-1,transacting factor Motifs on "-" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 123 TACGTGGC 116 (Mism.= 0) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 116 GCCACGTaGC 125 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00181 Up.Conf.Int. 1 Found 1 125 GCtACGTGGC 116 (Mism.= 1) TFBS AC: RSP00186//OS: rice (Oryza sativa), Oryza sativa /GENE: Amy3D/TFBS: G-box motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00361 Up.Conf.Int. 1 Found 1 124 CTACGTGGCtt 114 (Mism.= 2) TFBS AC: RSP00189//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.3 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 116 gCCACGTAGC 125 (Mism.= 1) TFBS AC: RSP00504//OS: bean, Phaseolus vulgaris /GENE: PAL2/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00110 Up.Conf.Int. 1 Found 1 116 GCCACGTaGCaC 127 (Mism.= 2) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00848 Up.Conf.Int. 1 Found 1 20 ACACGTG 14 (Mism.= 0) TFBS AC: RSP00751//OS: Catharanthus roseus /GENE: STR/TFBS: BN-2 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00685 Up.Conf.Int. 1 Found 1 204 AAAtgGATAAAA 193 (Mism.= 2) TFBS AC: RSP00756//OS: potato (Solanum tuberosum) /GENE: S2-RNase/TFBS: submotif B /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00491 Up.Conf.Int. 1 Found 1 101 CTCACACT 108 (Mism.= 0) TFBS AC: RSP00817//OS: arabidopsis (Arabidopsis thaliana) /GENE: CFI/TFBS: ACE-core (AtCFI) /BF: ACE-binding factor Motifs on "-" Strand: Mean Exp. Number 0.00350 Up.Conf.Int. 1 Found 1 21 TACACGTGaT 12 (Mism.= 1) TFBS AC: RSP00966//OS: snapdragon (Antirrhinum majus) /GENE: pallida/TFBS: G-box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 21 taCACGTGAT 12 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 21 TACACGTGat 12 (Mism.= 2) TFBS AC: RSP00978//OS: soybean (Glycine max) /GENE: vspA/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00225 Up.Conf.Int. 1 Found 1 12 ATCACGTGTa 21 (Mism.= 1) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00884 Up.Conf.Int. 1 Found 1 21 TACACGTGat 12 (Mism.= 2) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00719 Up.Conf.Int. 1 Found 1 122 ACGTGGC 116 (Mism.= 0) TFBS AC: RSP01223//OS: rice (Oryza sativa) /GENE: Amy3E (Amy8)/TFBS: C-myb motif /BF: C-myb Motifs on "-" Strand: Mean Exp. Number 0.00982 Up.Conf.Int. 1 Found 1 135 CCGgTGGAG 127 (Mism.= 1) TFBS AC: RSP01259//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS6 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 124 CTACGTGG 117 (Mism.= 0) TFBS AC: RSP01469//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z1 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00649 Up.Conf.Int. 1 Found 1 60 TCACATGgGT 69 (Mism.= 1) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00717 Up.Conf.Int. 1 Found 1 123 tACGTGGC 116 (Mism.= 1) TFBS AC: RSP01637//OS: Arabidopsis (Arabidopsis thaliana) /GENE: XSP1/TFBS: TERE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00661 Up.Conf.Int. 1 Found 1 51 CTGTAAAGCTC 41 (Mism.= 2) TFBS AC: RSP01726//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 126 TGCtACGTGGcT 115 (Mism.= 2) TFBS AC: RSP01861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CRC/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00245 Up.Conf.Int. 1 Found 1 123 TACGTGGC 116 (Mism.= 0) TFBS AC: RSP01882//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Albumin 2S2/TFBS: G-box /BF: bZIP53 Motifs on "-" Strand: Mean Exp. Number 0.00671 Up.Conf.Int. 1 Found 1 22 TTACACGTGATT 11 (Mism.= 0) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00827 Up.Conf.Int. 1 Found 1 124 CtACGTGGCt 115 (Mism.= 2) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00937 Up.Conf.Int. 1 Found 1 84 GCCGTTG 78 (Mism.= 0) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 12 AtCACGTGTa 21 (Mism.= 2) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 12 AtCACGTGTA 21 (Mism.= 1) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 21 TACACGTGAT 12 (Mism.= 2) TFBS AC: RSP02296//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G/A-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00340 Up.Conf.Int. 1 Found 1 115 AGCCACGTAgcA 126 (Mism.= 2) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00089 Up.Conf.Int. 1 Found 2 239 GAAGAAGAA 231 (Mism.= 0) 236 GAAGAAGAA 228 (Mism.= 0) TFBS AC: RSP02454//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: HY5 BS /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 20 ACACGTGaTT 11 (Mism.= 1) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00322 Up.Conf.Int. 1 Found 1 21 TACACGTGaT 12 (Mism.= 1) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "-" Strand: Mean Exp. Number 0.00719 Up.Conf.Int. 1 Found 1 122 ACGTGGC 116 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00726 Up.Conf.Int. 1 Found 1 21 tACACGTGAt 12 (Mism.= 2) TFBS AC: RSP02911//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00901 Up.Conf.Int. 1 Found 1 21 taCACGTGAT 12 (Mism.= 2) Totally 36 motifs of 34 different TFBSs have been found ____________________________________________________________ >PLPR0542..AC:M81130.1..OS:Arabidopsis thaliana..GENE:carboxypeptidase Y-like protein..PROD:carboxypeptidase Y-like protein..[ -200: +51] ..CDS: +32..TSS:201 (+1) # Alternative TSS(s): +2 +3 +4 +5 + Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.16 T - 0.27 C - 0.25 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "-" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 150 ACACGTGGC 142 (Mism.= 0) TFBS AC: RSP00175//OS: arabidopsis (Arabidopsis thaliana) /GENE: synthetic oligonucleotides/TFBS: ABRE /BF: ABFs Motifs on "-" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 149 CACGTGGC 142 (Mism.= 0) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00195 Up.Conf.Int. 1 Found 1 151 tACACGTGGC 142 (Mism.= 1) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "-" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 152 gtACACGTGGCA 141 (Mism.= 2) TFBS AC: RSP00250//OS: pea, Pisum sativum /GENE: Synthetic oligonucleotides/TFBS: Myb2 /BF: Myb26; Myb-like DNA binding protein Motifs on "-" Strand: Mean Exp. Number 0.00923 Up.Conf.Int. 1 Found 1 249 AAAAGTTAGtTTc 237 (Mism.= 2) TFBS AC: RSP00254//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: Py box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 198 CCTTTTC 192 (Mism.= 0) TFBS AC: RSP00431//OS: arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AtMYB77 BS /BF: AtMYB77 Motifs on "-" Strand: Mean Exp. Number 0.00286 Up.Conf.Int. 1 Found 1 21 ATCGACGGTTAG 10 (Mism.= 0) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "-" Strand: Mean Exp. Number 0.00880 Up.Conf.Int. 1 Found 1 150 ACACGTG 144 (Mism.= 0) TFBS AC: RSP00676//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: PY-Box /BF: aleurone layers nuclear protein ectracts Motifs on "-" Strand: Mean Exp. Number 0.00997 Up.Conf.Int. 1 Found 1 198 CCTTTTC 192 (Mism.= 0) TFBS AC: RSP00680//OS: barley (Hordeum vulgare) /GENE: Amy32b/TFBS: GARE/Box 2 /BF: aleurone layers nuclear protein ectracts Motifs on "+" Strand: Mean Exp. Number 0.00924 Up.Conf.Int. 1 Found 1 53 TAACAGAtTC 62 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "+" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 142 GCCACGTGtA 151 (Mism.= 1) TFBS AC: RSP00723//OS: tobacco (Nicotiana plumbaginifolia) /GENE: rbcS 8B/TFBS: G-box /BF: HY5 Motifs on "-" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 149 CACGTGGC 142 (Mism.= 0) TFBS AC: RSP00783//OS: tobacco (Nicotiana tabacum) /GENE: OLIGO-GUS/TFBS: G-box 7 /BF: G-box binding bZIP proteins Motifs on "-" Strand: Mean Exp. Number 0.00011 Up.Conf.Int. 1 Found 1 151 TACACGTGGC 142 (Mism.= 0) TFBS AC: RSP00920//OS: Petunia hybrida /GENE: chsJ/TFBS: MBSII /BF: MYB.Ph3 Motifs on "-" Strand: Mean Exp. Number 0.00778 Up.Conf.Int. 1 Found 1 249 AAAAGTTAGTTt 238 (Mism.= 1) TFBS AC: RSP00922//OS: barley (Hordeum vulgare) /GENE: Amy2/32/TFBS: GARE /BF: HRT Motifs on "+" Strand: Mean Exp. Number 0.00054 Up.Conf.Int. 1 Found 1 48 TaaCGTAACAGAtTC 62 (Mism.= 3) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 141 TGCCACGTGTac 152 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00460 Up.Conf.Int. 1 Found 1 141 TGCCACGTGtAc 152 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 142 gCCACGTGTa 151 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 151 TaCACGTGgC 142 (Mism.= 2) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 151 TACACGTGgc 142 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00862 Up.Conf.Int. 1 Found 1 151 TACACGTGgc 142 (Mism.= 2) TFBS AC: RSP01013//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 1 /BF: GAPF Motifs on "+" Strand: Mean Exp. Number 0.00458 Up.Conf.Int. 1 Found 1 229 aAAATGGAGA 238 (Mism.= 1) TFBS AC: RSP01033//OS: arabidopsis (Arabidopsis thaliana) /GENE: FT/TFBS: CArG box /BF: FLC Motifs on "-" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 235 CCATTTTTGG 226 (Mism.= 1) TFBS AC: RSP01034//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 1/2 /BF: ABI3; ABI5; AREB1 Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 148 ACGTGGC 142 (Mism.= 0) TFBS AC: RSP01204//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM1 (CArG box 1) /BF: MADS box proteins Motifs on "-" Strand: Mean Exp. Number 0.00547 Up.Conf.Int. 1 Found 1 235 CCATTTTTGG 226 (Mism.= 1) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00217 Up.Conf.Int. 1 Found 1 150 ACACGTGG 143 (Mism.= 0) TFBS AC: RSP01570//OS: rice (Oryza sativa, indica) /GENE: Synthetic oligonucleotides/TFBS: Em1a /BF: OSBZ Motifs on "-" Strand: Mean Exp. Number 0.00788 Up.Conf.Int. 1 Found 1 149 CACGTGGC 142 (Mism.= 0) TFBS AC: RSP01593//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00022 Up.Conf.Int. 1 Found 1 151 TACACGTGGCAG 140 (Mism.= 1) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00499 Up.Conf.Int. 1 Found 1 152 GTACACGTGgcA 141 (Mism.= 2) TFBS AC: RSP01721//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA8 (At2g22670)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00287 Up.Conf.Int. 1 Found 1 117 CGATACGTGccC 106 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 142 GCCACGTGTa 151 (Mism.= 1) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 142 GcCACGTGTa 151 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 151 tACACGTGgC 142 (Mism.= 2) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "-" Strand: Mean Exp. Number 0.00198 Up.Conf.Int. 1 Found 1 152 gtACACGTGGCA 141 (Mism.= 2) TFBS AC: RSP01945//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtbZIP1 Motifs on "-" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 150 aCACGTGGCa 141 (Mism.= 2) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00951 Up.Conf.Int. 1 Found 1 142 gCCACGTGTa 151 (Mism.= 2) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "-" Strand: Mean Exp. Number 0.00799 Up.Conf.Int. 1 Found 1 151 tACACGTGgC 142 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "-" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 151 TaCACGTGGC 142 (Mism.= 1) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00677 Up.Conf.Int. 1 Found 1 226 CCAAAAATGG 235 (Mism.= 1) TFBS AC: RSP02201//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 133R/TFBS: CArG (133R) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00776 Up.Conf.Int. 1 Found 1 235 CCATTTTTGG 226 (Mism.= 0) TFBS AC: RSP02251//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AK/HSD1/TFBS: G-box /BF: DPBF4 Motifs on "-" Strand: Mean Exp. Number 0.00034 Up.Conf.Int. 1 Found 1 150 ACACGTGGC 142 (Mism.= 0) TFBS AC: RSP02385//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: CG /BF: NtWLIM2 Motifs on "+" Strand: Mean Exp. Number 0.00127 Up.Conf.Int. 1 Found 1 11 tAACCGTCGATT 22 (Mism.= 1) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00567 Up.Conf.Int. 1 Found 1 225 TTCTTTCA 218 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 142 GCCACGTGTa 151 (Mism.= 1) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 142 GcCACGTGtA 151 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 151 tACACGTGGc 142 (Mism.= 2) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 1 151 tACACGTGgC 142 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 142 GcCACGTGtA 151 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 151 tACACGTGGc 142 (Mism.= 2) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00979 Up.Conf.Int. 1 Found 1 151 TaCACGTgGC 142 (Mism.= 2) TFBS AC: RSP02822//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 120 AGATATTTC 128 (Mism.= 1) TFBS AC: RSP02823//OS: Arabidopsis (Arabidopsis thaliana) /GENE: GI/TFBS: EE3 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00725 Up.Conf.Int. 1 Found 1 120 AGATATTTC 128 (Mism.= 1) TFBS AC: RSP02832//OS: foxtail millet (Setaria italica) /GENE: SiARDP/TFBS: ABRE2 /BF: SiAREB1 ; SiAREB2 Motifs on "-" Strand: Mean Exp. Number 0.00791 Up.Conf.Int. 1 Found 1 148 ACGTGGC 142 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 151 tACACGTGgC 142 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "-" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 151 tACACGTGGC 142 (Mism.= 1) TFBS AC: RSP02912//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "-" Strand: Mean Exp. Number 0.00988 Up.Conf.Int. 1 Found 1 10 GGCACGCGAg 1 (Mism.= 1) Totally 56 motifs of 52 different TFBSs have been found ____________________________________________________________ >PLPR0543..AC:NC_003074..OS:Arabidopsis thaliana..GENE:ARR5..PROD:two-component responsive regulator..[ -200: +51] ..CDS: +69..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.10 T - 0.33 C - 0.26 TFBS AC: RSP00301//OS: rice (Oryza sativa) (Oryza sativa) /GENE: GluB-1/TFBS: PROL box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 100 TGCAAAG 106 (Mism.= 0) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00619 Up.Conf.Int. 1 Found 1 45 CAGAATAA 52 (Mism.= 0) TFBS AC: RSP00709//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: I-box /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 63 TAATTATTT 55 (Mism.= 0) TFBS AC: RSP00882//OS: maize (Zea mays) /GENE: gamma-27kDa zein/TFBS: Pb 3 /BF: PBF Motifs on "+" Strand: Mean Exp. Number 0.00600 Up.Conf.Int. 1 Found 1 100 TGCAAAG 106 (Mism.= 0) TFBS AC: RSP00935//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: CT element /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00331 Up.Conf.Int. 1 Found 1 149 CCTCTCCTTCttTC 162 (Mism.= 2) TFBS AC: RSP01075//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: ABRE II /BF: CpbZIP1; CpbZIP2 (short); Motifs on "-" Strand: Mean Exp. Number 0.00483 Up.Conf.Int. 1 Found 1 73 agCGCGTGGC 64 (Mism.= 2) TFBS AC: RSP01326//OS: pea (Pisum sativum) /GENE: AB80/TFBS: AB1 heptamer /BF: ABF-2 Motifs on "-" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 38 TCTCAAA 32 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00235 Up.Conf.Int. 1 Found 2 243 GtGAGAGAGAtAGAGAg 227 (Mism.= 3) 241 GAGAGAGAtAGAGAGAA 225 (Mism.= 1) TFBS AC: RSP01326//OS: pea (Pisum sativum) /GENE: AB80/TFBS: AB1 heptamer /BF: ABF-2 Motifs on "-" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 38 TCTCAAA 32 (Mism.= 0) TFBS AC: RSP01599//OS: spinach (Spinacia oleracea) /GENE: RPS1/TFBS: Inr /BF: unknown transcriptin factor Motifs on "-" Strand: Mean Exp. Number 0.00798 Up.Conf.Int. 1 Found 1 23 TTTCAAAT 16 (Mism.= 0) TFBS AC: RSP02199//OS: tomato (Lycopersicon esculentum) /GENE: Genomic fragment 016/TFBS: CArG (016) /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00418 Up.Conf.Int. 1 Found 1 11 CCAAAATTTG 20 (Mism.= 1) TFBS AC: RSP02214//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: FHY3/FAR1 BS (FHY1) /BF: FHY3/FAR1 Motifs on "+" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 66 CACGCGC 72 (Mism.= 0) TFBS AC: RSP02215//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: FHY3/FAR1 BS (FHL) /BF: FHY3/FAR1 Motifs on "+" Strand: Mean Exp. Number 0.00337 Up.Conf.Int. 1 Found 1 66 CACGCGC 72 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00613 Up.Conf.Int. 1 Found 3 225 tTCTCTCTaTCTCTCT 240 (Mism.= 2) 227 CTCTCTaTCTCTCTCa 242 (Mism.= 2) 229 CTCTaTCTCTCTCaCg 244 (Mism.= 3) TFBS AC: RSP02394//OS: Arabidopsis (Arabidopsis thaliana) /GENE: VDD/TFBS: CArG2 /BF: STK-SEP3 Motifs on "+" Strand: Mean Exp. Number 0.00168 Up.Conf.Int. 1 Found 1 11 CCAAAATTTG 20 (Mism.= 0) TFBS AC: RSP02672//OS: rice (Oryza sativa) /GENE: SamDC/TFBS: W-box /BF: WRKY Motifs on "+" Strand: Mean Exp. Number 0.00265 Up.Conf.Int. 1 Found 1 22 aAATATGACTtT 33 (Mism.= 2) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "+" Strand: Mean Exp. Number 0.00335 Up.Conf.Int. 1 Found 1 235 CTCTCTCAC 243 (Mism.= 0) TFBS AC: RSP02912//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpbHLH2 BS1 /BF: IpbHLH2 Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 64 GcCACGCGcT 73 (Mism.= 2) TFBS AC: RSP02925//OS: Medicago truncatula /GENE: UGT73K1/TFBS: N-box /BF: TSAR1 Motifs on "+" Strand: Mean Exp. Number 0.00591 Up.Conf.Int. 1 Found 1 239 cTCACGAGTc 248 (Mism.= 2) Totally 22 motifs of 19 different TFBSs have been found ____________________________________________________________ >PLPR0544..AC:AL031004.1..OS:Arabidopsis thaliana..GENE:REM1..PROD:reproductive meristem protein 1 (=transcriptional factor B3 family protein)..[ -200: +51] ..CDS: +52..TSS:201 (+1) |Taxon: Dicot |P Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.36 C - 0.16 TFBS AC: RSP00550//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: CAAT/13 M /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00313 Up.Conf.Int. 1 Found 1 60 TGGAaTATGTG 50 (Mism.= 1) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00808 Up.Conf.Int. 1 Found 1 187 TaTTGCTTTTTCTcTC 202 (Mism.= 2) TFBS AC: RSP00744//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 4 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00916 Up.Conf.Int. 1 Found 1 124 AGaAGGTAAAAC 113 (Mism.= 1) TFBS AC: RSP00915//OS: maize (Zea mays) /GENE: b-32/TFBS: B3 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00999 Up.Conf.Int. 1 Found 1 39 GATGATGgGt 48 (Mism.= 2) TFBS AC: RSP00953//OS: arabidopsis (Arabidopsis thaliana) /GENE: ATHB6/TFBS: ATHB6 BS /BF: ATHB6 Motifs on "+" Strand: Mean Exp. Number 0.00820 Up.Conf.Int. 1 Found 1 16 CAATTATTA 24 (Mism.= 0) TFBS AC: RSP01093//OS: pea (Pisum sativum) /GENE: GS2/TFBS: box 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00253 Up.Conf.Int. 1 Found 1 136 TCTAAGaAAAG 146 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00033 Up.Conf.Int. 1 Found 2 212 GtcAGAGAGtGAGAGAA 196 (Mism.= 3) 210 cAGAGAGtGAGAGAaAA 194 (Mism.= 3) TFBS AC: RSP01639//OS: tobacco (Nicotiana tabacum) /GENE: PR-Q; ACS2/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00980 Up.Conf.Int. 1 Found 1 20 AATTGTCCAT 11 (Mism.= 1) TFBS AC: RSP02002//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 5 /BF: WRKY40 Motifs on "-" Strand: Mean Exp. Number 0.00969 Up.Conf.Int. 1 Found 1 159 TGATTGACgTTt 148 (Mism.= 2) TFBS AC: RSP02218//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHL/TFBS: ACE1 (FHL) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00405 Up.Conf.Int. 1 Found 1 148 AAACGTCA 155 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00083 Up.Conf.Int. 1 Found 2 192 CTtTtTCTCTCaCTCT 207 (Mism.= 3) 194 tTtTCTCTCaCTCTCT 209 (Mism.= 3) TFBS AC: RSP02874//OS: Empire Red Leaf Cotton (Gossypium hirsutum) /GENE: GhJAZ1/TFBS: GbWRKY1 BS1 /BF: GbWRKY1 Motifs on "-" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 216 TcAGGTCAgAGA 205 (Mism.= 2) Totally 14 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0545..AC:absent..OS:Nicotiana tabacum..GENE:TSS..PROD:squalene synthase..[ -200: +51] ..CDS: +97..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.26 G - 0.12 T - 0.37 C - 0.25 TFBS AC: RSP00011//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: RTBV promoter/TFBS: C2b-BS /BF: root-sprcific nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00840 Up.Conf.Int. 1 Found 1 243 GCTGATCCAC 234 (Mism.= 2) TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00459 Up.Conf.Int. 1 Found 1 6 TTAtTCCAcTGG 17 (Mism.= 2) TFBS AC: RSP00406//OS: tobacco (Nicotiana tabacum) /GENE: RNP2/TFBS: CDE-CHR /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00205 Up.Conf.Int. 1 Found 1 166 AGaGGCGG 159 -- 6-- 152 TTcGAA 147 (Mism.= 1/ 1) TFBS AC: RSP00802//OS: potato (Solanum tuberosum) /GENE: patatin 21/TFBS: Box A-1 /BF: BABF Motifs on "-" Strand: Mean Exp. Number 0.00237 Up.Conf.Int. 1 Found 1 204 ATATATATATAagAgAaAAT 185 (Mism.= 4) TFBS AC: RSP00889//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtAOX1a/TFBS: GC motif /BF: bZIP proteins Motifs on "+" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 42 CCACGCA 48 (Mism.= 0) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00249 Up.Conf.Int. 1 Found 1 108 CaAACAAACTCC 119 (Mism.= 1) TFBS AC: RSP01463//OS: soybean (Glycine max) /GENE: BiP6/TFBS: AT-rich ELS /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00309 Up.Conf.Int. 1 Found 1 195 ATaTATATATTTA 207 (Mism.= 1) TFBS AC: RSP01640//OS: tobacco (Nicotiana tabacum) /GENE: Beta-glucanase/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "-" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 29 CTATGTCTgT 20 (Mism.= 1) TFBS AC: RSP01944//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C-box /BF: AtbZIP1 Motifs on "+" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 86 TGCTaACGTCt 96 (Mism.= 2) TFBS AC: RSP02123//OS: rice (Oryza sativa) /GENE: CPD3/TFBS: GARE /BF: GAMYB-like Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 18 AAACAGA 24 (Mism.= 0) TFBS AC: RSP02178//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp16/IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00356 Up.Conf.Int. 1 Found 1 53 TGAATtGCGTGgAA 40 (Mism.= 2) Totally 11 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0546..AC:AF122050.1..OS:Hordeum vulgare..GENE:limit dextrinase (note: pullanase)..PROD:limit dextrinase..[ -200: +51] ..CDS: +78..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.20 T - 0.24 C - 0.18 TFBS AC: RSP00113//OS: soybean (Glycine max) /GENE: GH3/TFBS: TGA2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 177 TGACGCGGC 169 (Mism.= 1) TFBS AC: RSP02248//OS: rice (Oryza sativa) /GENE: KO2/TFBS: GDD1 BS /BF: BC12/GDD1 Motifs on "+" Strand: Mean Exp. Number 0.00718 Up.Conf.Int. 1 Found 1 19 ACCAACTTGtt 29 (Mism.= 2) TFBS AC: RSP02719//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: MYBcore (DkANR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00594 Up.Conf.Int. 1 Found 1 116 tTCGGTTATG 107 (Mism.= 1) TFBS AC: RSP02772//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: SND1 BS /BF: SND1 Motifs on "-" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 54 TTGCGTAA 47 (Mism.= 0) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0547..AC:M69188.1..OS:Gossypium hirsutum..GENE: LegA..PROD:legumin A..[ -200: +51] ..CDS: +28..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.22 G - 0.12 T - 0.33 C - 0.33 TFBS AC: RSP00068//OS: arabidopsis (Arabidopsis thaliana) /GENE: CHS/TFBS: UV LRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 217 aACACGTAGA 226 (Mism.= 1) TFBS AC: RSP00232//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS7 /BF: TGA2, by assistance (enhancement) of NPR1/NIM1 protein Motifs on "-" Strand: Mean Exp. Number 0.00728 Up.Conf.Int. 1 Found 1 86 ACaTCATAGA 77 (Mism.= 1) TFBS AC: RSP00509//OS: oat (Avena fatua) /GENE: alpha-Amy2/A/TFBS: TATA box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00952 Up.Conf.Int. 1 Found 1 168 TATAAATACCAc 179 (Mism.= 1) TFBS AC: RSP00841//OS: arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: 12 nt palindrome /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 125 TGTGtCGaCACA 136 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00326 Up.Conf.Int. 1 Found 1 136 TGTGtCGaCACA 125 (Mism.= 2) TFBS AC: RSP00918//OS: maize (Zea mays) /GENE: O2/TFBS: B5-like motif /BF: Opaque-2 Motifs on "-" Strand: Mean Exp. Number 0.00642 Up.Conf.Int. 1 Found 1 105 GTTGAGGTTA 96 (Mism.= 1) TFBS AC: RSP01042//OS: potato (Solanum tuberosum) /GENE: St4cl-1/TFBS: FP1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00497 Up.Conf.Int. 1 Found 1 192 CCCTTCTTCACCAAAT 207 (Mism.= 3) TFBS AC: RSP01260//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS7 /BF: GBF1 Motifs on "-" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 225 CTACGTGT 218 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00157 Up.Conf.Int. 1 Found 1 167 CTATAAATA 175 (Mism.= 0) TFBS AC: RSP01301//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01302//OS: wheat (Triticum aestivum) /GENE: Amy2/54/TFBS: Inr element /BF: Motifs on "+" Strand: Mean Exp. Number 0.00052 Up.Conf.Int. 1 Found 1 167 CTATAAATAC 176 (Mism.= 0) TFBS AC: RSP01715//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF6 (At1g30330)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00353 Up.Conf.Int. 1 Found 1 216 cAACACGTAgAT 227 (Mism.= 2) TFBS AC: RSP02058//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ZIP4/TFBS: ZDRE /BF: bZIP19; bZIP23 Motifs on "+" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 126 GTGTCGACAC 135 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00043 Up.Conf.Int. 1 Found 1 135 GTGTCGACAC 126 (Mism.= 0) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00734 Up.Conf.Int. 1 Found 1 179 GTGGTATTTA 170 (Mism.= 2) TFBS AC: RSP02216//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FHY1/TFBS: ACE1 (FHY1) /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00132 Up.Conf.Int. 1 Found 1 218 ACACGTAG 225 (Mism.= 0) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 200 CACCAAAT 207 (Mism.= 0) TFBS AC: RSP02802//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: TATA-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00470 Up.Conf.Int. 1 Found 1 168 TATAAATA 175 (Mism.= 0) Totally 18 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0548..AC:AJ536577.1..OS:Lycopersicon esculentum..GENE:rnale..PROD:ribonuclease T2..[ -200: +51] ..CDS: +38..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.44 G - 0.05 T - 0.33 C - 0.18 TFBS AC: RSP00440//OS: arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: -NF-kB-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00616 Up.Conf.Int. 1 Found 1 136 aGACTTTTC 144 (Mism.= 1) TFBS AC: RSP00843//OS: maize (Zea mays) /GENE: H3C4/TFBS: CAT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00567 Up.Conf.Int. 1 Found 1 33 GCCAAT 28 (Mism.= 0) TFBS AC: RSP00933//OS: pine (Pinus sylvestris) /GENE: GS1a/TFBS: AT-2a /BF: nuclear proteins from cotyledons; Motifs on "+" Strand: Mean Exp. Number 0.00789 Up.Conf.Int. 1 Found 1 155 TTTATtATTTTTT 167 (Mism.= 1) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00738 Up.Conf.Int. 1 Found 1 158 tAAATGAAAG 149 (Mism.= 1) TFBS AC: RSP01060//OS: sunflower (Helianthus annuus) /GENE: OLIGOs/TFBS: Hahb-4 BS /BF: Hahb-4 Motifs on "+" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 23 CAATAATTG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 31 CAATTATTG 23 (Mism.= 0) TFBS AC: RSP01077//OS: Craterostigma plantagineum (Scrophulariaceae) /GENE: CpC2/TFBS: HDZIP BS /BF: CpbZIP1; CpbZIP2 (short); Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 23 CAATAATTG 31 (Mism.= 0) TFBS AC: RSP01597//OS: pea (Pisum sativum) /GENE: rbcS-3.6/TFBS: Box II* /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 28 aTtGGCATCTT 38 (Mism.= 2) TFBS AC: RSP01881//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: Athb-1 BS /BF: Athb-1 Motifs on "+" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 23 CAATAATTG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 31 CAATTATTG 23 (Mism.= 0) TFBS AC: RSP02037//OS: Medicago truncatula /GENE: LBD1/TFBS: HB1 BS /BF: HB1 Motifs on "+" Strand: Mean Exp. Number 0.00301 Up.Conf.Int. 1 Found 1 23 CAATAATTG 31 (Mism.= 0) TFBS AC: RSP02211//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: P1BS (NtPT3) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00914 Up.Conf.Int. 1 Found 1 9 GAATATAC 16 (Mism.= 0) TFBS AC: RSP02508//OS: rice (Oryza sativa, japonica) /GENE: D14/TFBS: CArG 1 /BF: [OsMADS57 + OsTB1] Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 124 CTTTAAAAAG 133 (Mism.= 0) TFBS AC: RSP02509//OS: rice (Oryza sativa, japonica) /GENE: D14/TFBS: CArG 2 /BF: [OsMADS57 + OsTB1] Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 124 CTTTAAAAAG 133 (Mism.= 1) TFBS AC: RSP02691//OS: Chlorophyte Alga Dunaliella tertiolecta /GENE: Lhcb1/TFBS: TCTAA box 2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00690 Up.Conf.Int. 1 Found 1 10 TCTAAAGT 3 (Mism.= 0) TFBS AC: RSP02910//OS: wheat (Triticum aestivum) /GENE: Synthetic oligonucleotides/TFBS: HDZ2 /BF: TaHDZipI-3; TaHDZipI-4; TaHDZipI-5 Motifs on "+" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 23 CAATAATTG 31 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00528 Up.Conf.Int. 1 Found 1 31 CAATTATTG 23 (Mism.= 0) TFBS AC: RSP02959//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box A /BF: BZR1; ARF7 Motifs on "+" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 39 aTCAAtTGTG 48 (Mism.= 2) Totally 18 motifs of 15 different TFBSs have been found ____________________________________________________________ >PLPR0549..AC:NC_003075..OS:Arabidopsis thaliana..GENE:SQS1..PROD:farnesyl-diphosphate farnesyltransferase 1 (=squalene synthase 1)..[ -200: +51] ..CDS: +130..TSS:201 (+1) |Taxon: Dicot |Promoter: TA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.18 T - 0.30 C - 0.16 TFBS AC: RSP00357//OS: rice (Oryza sativa) /GENE: Rep-1/TFBS: CARE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00268 Up.Conf.Int. 1 Found 1 112 CAACTCAC 105 (Mism.= 0) TFBS AC: RSP00444//OS: maize /GENE: cyPPDK1/TFBS: box d /BF: DOF1 Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 123 AAaAAAGAAAGAAA 136 (Mism.= 1) TFBS AC: RSP00558//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3B/TFBS: UN I /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00797 Up.Conf.Int. 1 Found 1 199 TCCTATTttTTAG 187 (Mism.= 2) TFBS AC: RSP00860//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-1 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00531 Up.Conf.Int. 1 Found 1 128 AGAAAGAAA 136 (Mism.= 0) TFBS AC: RSP00062//OS: Brassica napus /GENE: napA/TFBS: RY/G (box 2 & box 3) /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 233 CAgGTG 238 -- 6-- 245 CcTGCA 250 (Mism.= 1/ 1) TFBS AC: RSP01437//OS: rice (Oryza sativa) /GENE: RSs1/TFBS: GATA /BF: R-GATA Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 193 AATAGGATA 201 (Mism.= 0) TFBS AC: RSP02001//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ABF4/TFBS: W-box 4 /BF: WRKY40 Motifs on "+" Strand: Mean Exp. Number 0.00341 Up.Conf.Int. 1 Found 1 49 GcTCTGACaTTT 60 (Mism.= 2) TFBS AC: RSP02208//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: P1BS (SmPT3) /BF: PHR1 (P1) Motifs on "-" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 204 GAATATCC 197 (Mism.= 0) TFBS AC: RSP02212//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: P1BS (NtPT4) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 197 GGATATTC 204 (Mism.= 0) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "+" Strand: Mean Exp. Number 0.00513 Up.Conf.Int. 1 Found 1 124 aaAAAGAAAGAA 135 (Mism.= 2) TFBS AC: RSP02768//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC055 BS /BF: ANAC055 Motifs on "+" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 19 AAGTTtCGTG 28 (Mism.= 1) TFBS AC: RSP02769//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC019 BS /BF: ANAC019 Motifs on "+" Strand: Mean Exp. Number 0.00517 Up.Conf.Int. 1 Found 1 19 AAGTTtCGTG 28 (Mism.= 1) TFBS AC: RSP02919//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PLA2-gamma/TFBS: gamma-MYB1 BS /BF: gamma-MYB1 Motifs on "+" Strand: Mean Exp. Number 0.00457 Up.Conf.Int. 1 Found 1 197 GGATATTC 204 (Mism.= 0) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0550..AC:NC_003075..OS:Arabidopsis thaliana..GENE:AtMLH1..PROD:DNA mismatch repair protein MLH1..[ -200: +51] ..CDS: +20..TSS:201 (+1) # Alternative TSS(s): +6 |Taxon: Dicot |Promoter: TATA-les Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.24 T - 0.29 C - 0.19 TFBS AC: RSP00632//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CIV /BF: S2F Motifs on "-" Strand: Mean Exp. Number 0.00255 Up.Conf.Int. 1 Found 1 121 TaGGGTTATAATt 109 (Mism.= 2) TFBS AC: RSP01303//OS: Arabidopsis (Arabidopsis thaliana) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00686 Up.Conf.Int. 1 Found 1 113 atAACCCTAA 122 (Mism.= 2) TFBS AC: RSP01304//OS: tomato (Lycopersicon esculentum) /GENE: A1 EF-1alpha/TFBS: Telo box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00659 Up.Conf.Int. 1 Found 1 113 atAACCCTAA 122 (Mism.= 2) TFBS AC: RSP01930//OS: maize, Zea mays /GENE: rbcSZm1/TFBS: 7B element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00756 Up.Conf.Int. 1 Found 1 132 GGCCACT 138 (Mism.= 0) TFBS AC: RSP02101//OS: maize (Zea mays) /GENE: A1/TFBS: P (-118) element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00328 Up.Conf.Int. 1 Found 1 69 CTTGCAGCTT 78 (Mism.= 1) TFBS AC: RSP02407//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ASF1B/TFBS: E2F BS (-138) /BF: E2Fa/DPa; E2Fe; E2Ff Motifs on "-" Strand: Mean Exp. Number 0.00539 Up.Conf.Int. 1 Found 1 196 cCTCGCGCC 188 (Mism.= 1) TFBS AC: RSP02898//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/bZIP/NAC TFs BS /BF: bHLH, bZIP, NAC TF Motifs on "-" Strand: Mean Exp. Number 0.00919 Up.Conf.Int. 1 Found 1 220 TCTCCTCCtC 211 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0551..AC:NC_003076..OS:Arabidopsis thaliana..GENE:MS1..PROD:male sterility 1 protein..[ -200: +51] ..CDS: +104..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.07 T - 0.34 C - 0.26 TFBS AC: RSP00235//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: LBS/WBS1 /BF: LFU; WUS Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 49 acAATCCAATGG 60 (Mism.= 2) TFBS AC: RSP00242//OS: arabidopsis (Arabidopsis thaliana) /GENE: AGAMAOUS (AG)/TFBS: AG1 /BF: LFU Motifs on "+" Strand: Mean Exp. Number 0.00125 Up.Conf.Int. 1 Found 1 51 AATCCAATGGTaA 63 (Mism.= 1) TFBS AC: RSP00306//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIb /BF: PCF1;, PCF2; Motifs on "+" Strand: Mean Exp. Number 0.00037 Up.Conf.Int. 1 Found 1 142 TGTGtGACCATc 153 (Mism.= 2) TFBS AC: RSP00426//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE1/ABRE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00757 Up.Conf.Int. 1 Found 1 210 ACCGAaAaGTG 200 (Mism.= 2) TFBS AC: RSP00548//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: CAAT/13 Y /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00143 Up.Conf.Int. 1 Found 1 64 GTtACCATTGG 54 (Mism.= 1) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00919 Up.Conf.Int. 1 Found 1 221 AACAAACCCCATC 233 (Mism.= 2) TFBS AC: RSP00745//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 5 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00534 Up.Conf.Int. 1 Found 1 95 GAAAGGTTAaTT 84 (Mism.= 1) TFBS AC: RSP00748//OS: arabidopsis (Arabidopsis thaliana) /GENE: Pc/TFBS: PCbox1 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 55 cAATGGTAACAA 66 (Mism.= 1) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00636 Up.Conf.Int. 1 Found 1 102 AGAAAGAGA 94 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00276 Up.Conf.Int. 1 Found 1 109 GAGtGAGAGAaAGAGAA 93 (Mism.= 2) TFBS AC: RSP01335//OS: tobacco (Nicotiana tabacum) /GENE: Synthetic oligonucleotides/TFBS: BGTF BS (Site1, wild) /BF: BGTF Motifs on "+" Strand: Mean Exp. Number 0.00171 Up.Conf.Int. 1 Found 1 55 caATGGTAACAATT 68 (Mism.= 2) TFBS AC: RSP01686//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AOX1a/TFBS: CARE D /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 147 CACACA 142 (Mism.= 0) TFBS AC: RSP01891//OS: Boea hygrometrica /GENE: BhGolS1/TFBS: W-box 2 /BF: BhWRKY1 Motifs on "+" Strand: Mean Exp. Number 0.00275 Up.Conf.Int. 1 Found 1 143 gTGTGACCaT 152 (Mism.= 2) TFBS AC: RSP02164//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PR-1/TFBS: LS10 /BF: DOF factors Motifs on "+" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 192 TTCcTCAacACTTTTC 207 (Mism.= 3) TFBS AC: RSP02179//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp18/IV /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00344 Up.Conf.Int. 1 Found 1 148 TCACAC 143 (Mism.= 0) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 4 91 CTtTCTCTtTCTCTCa 106 (Mism.= 3) 93 tTCTCTtTCTCTCaCT 108 (Mism.= 3) 95 CTCTtTCTCTCaCTCa 110 (Mism.= 3) 97 CTtTCTCTCaCTCaCT 112 (Mism.= 3) Totally 19 motifs of 16 different TFBSs have been found ____________________________________________________________ >PLPR0552..AC:AF265548.1..OS:Oryza sativa..GENE:DMC1A..PROD:meiotic protein Dmc1A..[ -200: +51] ..CDS: +86..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.15 G - 0.25 T - 0.22 C - 0.38 TFBS AC: RSP00674//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 2 /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00046 Up.Conf.Int. 1 Found 1 81 CAACacAACCACTT 94 (Mism.= 2) TFBS AC: RSP00292//OS: rice (Oryza sativa) /GENE: PCNA/TFBS: IIb-telo /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00149 Up.Conf.Int. 1 Found 1 61 TGtTCaCACA 70 --**-- 222 TTGGGTTT 229 (Mism.= 2/ 1) TFBS AC: RSP01104//OS: spinach (Spinacia oleracea) /GENE: rps22/TFBS: AC2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00150 Up.Conf.Int. 1 Found 1 182 AAACCTCC 175 (Mism.= 0) TFBS AC: RSP01988//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: 5A element W /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00780 Up.Conf.Int. 1 Found 1 233 CCAAAAA 227 (Mism.= 0) TFBS AC: RSP02774//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC092 BS /BF: ANAC092 Motifs on "-" Strand: Mean Exp. Number 0.00062 Up.Conf.Int. 1 Found 1 76 GTTGCGTGT 68 (Mism.= 0) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0553..AC:AF265549.1..OS:Oryza sativa..GENE:DMC1B..PROD:meiotic protein Dmc1B..[ -200: +51] ..CDS: +101..TSS:201 (+1) |Monocot Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.14 G - 0.27 T - 0.22 C - 0.37 TFBS AC: RSP00192//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: AACA motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 88 aAACAcACTCTA 77 (Mism.= 2) TFBS AC: RSP00474//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS4 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00674 Up.Conf.Int. 1 Found 1 78 tAAGTGGTGtTG 67 (Mism.= 2) TFBS AC: RSP00735//OS: arabidopsis (Arabidopsis thaliana) /GENE: CAB2/TFBS: CCA1 BS /BF: DET1; CCA1 Motifs on "-" Strand: Mean Exp. Number 0.00095 Up.Conf.Int. 1 Found 1 242 AAAAATCA 235 (Mism.= 0) TFBS AC: RSP01030//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 1 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 187 AGAACCTT 180 (Mism.= 1) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 187 AGAACCTT 180 (Mism.= 1) TFBS AC: RSP01723//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NAC1 (At1g56010)/TFBS: C/G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00519 Up.Conf.Int. 1 Found 1 208 cTCgACGTCTTT 219 (Mism.= 2) TFBS AC: RSP01835//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Cytc-1/TFBS: telo box /BF: AtPuralpha Motifs on "-" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 229 AAACCCTA 222 (Mism.= 0) TFBS AC: RSP01917//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Hsp18.1-CI/TFBS: TATA-HSE module M6 /BF: HsfA2 Motifs on "+" Strand: Mean Exp. Number 0.00018 Up.Conf.Int. 1 Found 1 176 GAgGAAggTTCTCTC 190 (Mism.= 3) TFBS AC: RSP02285//OS: rice (Oryza sativa) /GENE: rpL32_8.1/TFBS: Telo-box /BF: unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00156 Up.Conf.Int. 1 Found 1 222 TAGGGTTT 229 (Mism.= 0) TFBS AC: RSP02788//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: P2/GT-3b box /BF: GT-4 Motifs on "-" Strand: Mean Exp. Number 0.00551 Up.Conf.Int. 1 Found 1 245 CcGAAAAATC 236 (Mism.= 1) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00774 Up.Conf.Int. 1 Found 1 229 AAACCCTAg 221 (Mism.= 1) TFBS AC: RSP02991//OS: maize (Zea mays) /GENE: ZmGolS2/TFBS: HSE /BF: unknown TF Motifs on "-" Strand: Mean Exp. Number 0.00302 Up.Conf.Int. 1 Found 1 187 AGAAcCTTCC 178 (Mism.= 1) TFBS AC: RSP02994//OS: maize (Zea mays) /GENE: Synthetic oligonucleotides/TFBS: ZmID1 BS /BF: ZmID1 Motifs on "+" Strand: Mean Exp. Number 0.00780 Up.Conf.Int. 1 Found 1 86 TTTGTCGTCTC 96 (Mism.= 2) Totally 13 motifs of 13 different TFBSs have been found ____________________________________________________________ >PLPR0554..AC:AF198055.1..OS:Arabidopsis thaliana..GENE:PISTILLATA (P1)..PROD:pistillata (=floral homeotic protein)..[ -200: +51] ..CDS: +52..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.11 T - 0.29 C - 0.25 TFBS AC: RSP00205//OS: pea, Pisum sativum /GENE: rbcS-3A/TFBS: BOX II /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 182 aTGTGGTTtATATG 169 (Mism.= 2) TFBS AC: RSP00279//OS: arabidopsis (Arabidopsis thaliana) /GENE: A-p40/TFBS: inverted telo box /BF: unknown factor Motifs on "-" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 224 TTAGGGTTT 216 (Mism.= 0) TFBS AC: RSP00369//OS: arabidopsis (Arabidopsis thaliana) /GENE: eEF1AA1/TFBS: telo-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 216 AAACCCTAA 224 (Mism.= 0) TFBS AC: RSP00448//OS: pea, Pisum sativum /GENE: rp L9/TFBS: TTAGGGTTTT-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 224 TTAGGGTTT 216 (Mism.= 0) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00808 Up.Conf.Int. 1 Found 1 249 TTCTCTCTCta 239 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00803 Up.Conf.Int. 1 Found 3 230 AGAAAGAGA 238 (Mism.= 0) 236 AGAtAGAGA 244 (Mism.= 1) 240 AGAgAGAGA 248 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 1 242 AGAGAGaAA 250 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00369 Up.Conf.Int. 1 Found 4 230 AGAaAGAGA 238 (Mism.= 1) 236 AGAtAGAGA 244 (Mism.= 1) 240 AGAGAGAGA 248 (Mism.= 0) 242 AGAGAGAaA 250 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00215 Up.Conf.Int. 1 Found 1 122 AGAGAGAGA 114 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00155 Up.Conf.Int. 1 Found 1 240 AGAGAGAGA 248 (Mism.= 1) TFBS AC: RSP00971//OS: rice (Oryza sativa) tungro bacillform virus (RTBV; plant pararetrovirus) /GENE: Promoter of RTBV/TFBS: VBE /BF: VBP Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 169 GAAGaACaAGAAGAg 155 (Mism.= 3) TFBS AC: RSP01056//OS: arabidopsis (Arabidopsis thaliana) /GENE: cab2/TFBS: GT-3a Box III (3) /BF: GT-3a Motifs on "+" Strand: Mean Exp. Number 0.00257 Up.Conf.Int. 1 Found 1 131 AATGTTACTTT 141 (Mism.= 0) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00003 Up.Conf.Int. 1 Found 4 229 GAGAaAGAGAtAGAGAg 245 (Mism.= 3) 231 GAaAGAGAtAGAGAGAg 247 (Mism.= 3) 233 aAGAGAtAGAGAGAGAA 249 (Mism.= 2) 235 GAGAtAGAGAGAGAaAg 251 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 2 129 atGAGAtAGAGAGAGAA 113 (Mism.= 3) 127 GAGAtAGAGAGAGAaAt 111 (Mism.= 3) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "+" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 34 CTGtGCCCTCa 44 (Mism.= 2) TFBS AC: RSP01809//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GT-1bx /BF: GmGT-2A Motifs on "-" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 182 aTGTGGTTtATATG 169 (Mism.= 2) TFBS AC: RSP02087//OS: pea (Pisum sativum) /GENE: rbcS-E9/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 182 ATGTGGTTTATATG 169 (Mism.= 2) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 2 111 aTtTCTCTCTCTaTCT 126 (Mism.= 3) 113 tTCTCTCTCTaTCTCa 128 (Mism.= 3) Motifs on "-" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 5 251 CTtTCTCTCTCTaTCT 236 (Mism.= 2) 249 tTCTCTCTCTaTCTCT 234 (Mism.= 2) 247 CTCTCTCTaTCTCTtT 232 (Mism.= 2) 245 CTCTCTaTCTCTtTCT 230 (Mism.= 2) 243 CTCTaTCTCTtTCTCa 228 (Mism.= 3) TFBS AC: RSP02861//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: TELO-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00535 Up.Conf.Int. 1 Found 1 216 AAACCCTAA 224 (Mism.= 0) Totally 34 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0555..AC:AP004046.2..OS:Oryza sativa (japonica cultivar-group)..GENE:CAD2 (=OsCAD2)..PROD:cinnamyl-alchohol dehydrogenase..[ -200: +51] ..CDS: +135..TSS:201 (+1) # Alternative TSS(s): -4 -2 +2 | Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.18 T - 0.22 C - 0.31 TFBS AC: RSP00063//OS: rice (Oryza sativa), Oryza sativa /GENE: rab16B/TFBS: Motif III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00343 Up.Conf.Int. 1 Found 1 55 GCCGtGTGGC 64 (Mism.= 1) TFBS AC: RSP00557//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: UN U2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00210 Up.Conf.Int. 1 Found 1 39 TTTTGtTTTTTtTTTt 24 (Mism.= 3) TFBS AC: RSP00580//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: LRE-TATA AA /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00084 Up.Conf.Int. 1 Found 1 152 TTtTCcTTTaATTATA 167 (Mism.= 3) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00785 Up.Conf.Int. 1 Found 2 210 cGAGAGAGA 218 (Mism.= 1) 214 AGAGAGcGA 222 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00553 Up.Conf.Int. 1 Found 1 210 cGAGAGAGA 218 (Mism.= 1) TFBS AC: RSP01043//OS: potato (Solanum tuberosum) /GENE: St4cl-1/TFBS: FP2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00832 Up.Conf.Int. 1 Found 1 102 ctTCACCAACCCC 114 (Mism.= 2) TFBS AC: RSP01226//OS: Arabidopsis (Arabidopsis thaliana) /GENE: C4H/TFBS: P-box 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00147 Up.Conf.Int. 1 Found 1 101 CCTTCACCAACcCc 114 (Mism.= 2) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00011 Up.Conf.Int. 1 Found 1 207 cAGcGAGAGAGAGcGAA 223 (Mism.= 3) TFBS AC: RSP01499//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00892 Up.Conf.Int. 1 Found 1 117 TTCCCCcTCT 126 (Mism.= 1) TFBS AC: RSP01500//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: CS6 /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00892 Up.Conf.Int. 1 Found 1 117 TTCCCCcTCT 126 (Mism.= 1) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00032 Up.Conf.Int. 1 Found 1 223 tTCgCTCTCTCTCgCT 208 (Mism.= 3) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "-" Strand: Mean Exp. Number 0.00830 Up.Conf.Int. 1 Found 2 219 CTCTCTCtC 211 (Mism.= 1) 217 CTCTCTCgC 209 (Mism.= 1) Totally 14 motifs of 12 different TFBSs have been found ____________________________________________________________ >PLPR0556..AC:AB112028..OS:Nicotiana glutinosa..GENE:ngr1..PROD:ribonuclease NW..[ -200: +51] ..CDS: +383 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.08 T - 0.33 C - 0.18 TFBS AC: RSP00196//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00793 Up.Conf.Int. 1 Found 1 224 CTTTTGTGaACtTTA 210 (Mism.= 2) TFBS AC: RSP01129//OS: Petunia hybrida /GENE: Synthetic oligonucleotides/TFBS: ZPT2-2 BS 3 /BF: ZPT2-2 Motifs on "+" Strand: Mean Exp. Number 0.00921 Up.Conf.Int. 1 Found 1 181 AGC 183 -- 7-- 191 CAGT 194 (Mism.= 0/ 0) TFBS AC: RSP01201//OS: Chlorella vulgaris /GENE: NR/TFBS: NIT2 BS II /BF: NIT2 Motifs on "+" Strand: Mean Exp. Number 0.00102 Up.Conf.Int. 1 Found 1 113 TGAAGCTC 120 (Mism.= 0) TFBS AC: RSP02419//OS: rice (Oryza sativa. japonica) /GENE: BDP 6-5/TFBS: CRE 92-94 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 101 GATtCCAT 94 (Mism.= 1) TFBS AC: RSP02523//OS: rice (Oryza sativa, japonica) /GENE: Cytochrome P450 71D10/TFBS: DBS /BF: DST Motifs on "+" Strand: Mean Exp. Number 0.00750 Up.Conf.Int. 1 Found 1 51 CAATAATTATCA 62 (Mism.= 2) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0557..AC:AB112026..OS:Nicotiana glutinosa..GENE:ngr3..PROD:RNase NGR3..[ -200: +51] ..CDS: +450..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.11 T - 0.30 C - 0.18 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00426 Up.Conf.Int. 1 Found 1 65 ACACaTGGC 73 (Mism.= 1) TFBS AC: RSP00073//OS: tobacco (Nicotiana tabacum) /GENE: synthetic oligonucleotides/TFBS: PA /BF: TAF-1 Motifs on "+" Strand: Mean Exp. Number 0.00637 Up.Conf.Int. 1 Found 1 64 GaCACaTGGC 73 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00637 Up.Conf.Int. 1 Found 1 73 GCCAtGTGtC 64 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 63 TGACACaTGGCg 74 (Mism.= 2) TFBS AC: RSP00307//OS: barley (Hordeum vulgare) /GENE: Chi26/TFBS: GCCAAG motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00902 Up.Conf.Int. 1 Found 1 124 GCCAAG 119 (Mism.= 0) TFBS AC: RSP00423//OS: maize (Zea mays) /GENE: rab17/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 151 GACGTG 156 (Mism.= 0) TFBS AC: RSP00424//OS: maize (Zea mays) /GENE: rab17/TFBS: ABRE2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 156 CACGTC 151 (Mism.= 0) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00182 Up.Conf.Int. 1 Found 1 74 cGCCAtGTGTCA 63 (Mism.= 2) TFBS AC: RSP00986//OS: snapdragon (Antirrhinum majus) /GENE: gPAL2/TFBS: G-box /BF: GBP Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 157 aCACGTCG 150 (Mism.= 1) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 150 cGACGTGT 157 (Mism.= 1) TFBS AC: RSP01547//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE1 /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 151 GACGTG 156 (Mism.= 0) TFBS AC: RSP01549//OS: Sorghum (Sorghum bicolor; Sorghum vulgare) /GENE: Sbdhn2/TFBS: ABRE2 /BF: unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 156 CACGTC 151 (Mism.= 0) TFBS AC: RSP01863//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SUS2/TFBS: ABRE1 /BF: bZIP67 + LEC1/L1L-[NF-YC2] Motifs on "-" Strand: Mean Exp. Number 0.00135 Up.Conf.Int. 1 Found 1 73 GCCAtGTGTC 64 (Mism.= 1) TFBS AC: RSP01870//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AGAMOUS (AG)/TFBS: PAN BS /BF: PAN; ATBZIP21; TGA6; TGA5 Motifs on "-" Strand: Mean Exp. Number 0.00753 Up.Conf.Int. 1 Found 1 156 CACGTC 151 (Mism.= 0) TFBS AC: RSP02012//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_2) /BF: RAVL1 Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 73 GCCATGTGtC 64 (Mism.= 1) TFBS AC: RSP02075//OS: Humicola gricea /GENE: pacC/TFBS: PacC BS1 /BF: PacC Motifs on "-" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 125 tGCCAAGT 118 (Mism.= 1) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 176 CaATTTATAG 167 (Mism.= 1) TFBS AC: RSP02208//OS: eggplant (Solanum melongena) /GENE: SmPT3/TFBS: P1BS (SmPT3) /BF: PHR1 (P1) Motifs on "-" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 144 GAATATCC 137 (Mism.= 0) TFBS AC: RSP02212//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: P1BS (NtPT4) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 137 GGATATTC 144 (Mism.= 0) TFBS AC: RSP02397//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: DOF BS /BF: ThDof6 Motifs on "+" Strand: Mean Exp. Number 0.00485 Up.Conf.Int. 1 Found 1 236 taAAAGAAAGAA 247 (Mism.= 2) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00318 Up.Conf.Int. 1 Found 1 158 TaCACGTCGt 149 (Mism.= 2) TFBS AC: RSP02724//OS: rice (Oryza sativa) /GENE: OsYSL2/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00477 Up.Conf.Int. 1 Found 1 124 GCCAAGTATtt 114 (Mism.= 2) TFBS AC: RSP02774//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: ANAC092 BS /BF: ANAC092 Motifs on "-" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 92 GTTGCGTGT 84 (Mism.= 0) TFBS AC: RSP02919//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PLA2-gamma/TFBS: gamma-MYB1 BS /BF: gamma-MYB1 Motifs on "+" Strand: Mean Exp. Number 0.00250 Up.Conf.Int. 1 Found 1 137 GGATATTC 144 (Mism.= 0) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00888 Up.Conf.Int. 1 Found 1 167 CTATAAATTG 176 (Mism.= 1) Totally 25 motifs of 24 different TFBSs have been found ____________________________________________________________ >PLPR0558..AC:AB101032..OS:Solanum melongena ..GENE:SmCP..PROD:cysteine proteinase..[ -200: +51] ..CDS: +407..TSS:201 (+1)... |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.39 G - 0.13 T - 0.31 C - 0.17 TFBS AC: RSP00002//OS: Brassica napus /GENE: Oleosin/TFBS: ABRE-3 /BF: B.napus embryo protein factor Motifs on "+" Strand: Mean Exp. Number 0.00493 Up.Conf.Int. 1 Found 1 116 ACACGTGtC 124 (Mism.= 1) TFBS AC: RSP00130//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: C2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00630 Up.Conf.Int. 1 Found 1 250 AATAATAATAAaAAgAAgaA 231 (Mism.= 4) TFBS AC: RSP00204//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00670 Up.Conf.Int. 1 Found 1 115 tACACGTGtC 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00675 Up.Conf.Int. 1 Found 1 124 GACACGTGta 115 (Mism.= 2) TFBS AC: RSP00219//OS: arabidopsis (Arabidopsis thaliana) /GENE: RBCS-1A/TFBS: G box-1 /BF: HY5; Arabidopsis bZIP protein - transcriptionl factor Motifs on "+" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 114 TtACACGTGtCA 125 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 125 TGACACGTGtaA 114 (Mism.= 2) TFBS AC: RSP00340//OS: soybean (Glycine max) /GENE: GmAux28/TFBS: B1-core /BF: SGBF-1; SGBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 115 TaCACGTGTC 124 (Mism.= 1) TFBS AC: RSP00524//OS: carrot (Daucus carota) /GENE: Dc3/TFBS: E4-core /BF: DPBF-1; DPBF-2; Motifs on "+" Strand: Mean Exp. Number 0.00549 Up.Conf.Int. 1 Found 1 116 ACACGTG 122 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 123 ACACGTG 117 (Mism.= 0) TFBS AC: RSP00580//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: LRE-TATA AA /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00165 Up.Conf.Int. 1 Found 1 29 TTATtATTTtATTATA 14 (Mism.= 2) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 201 CCtCTCCTC 193 (Mism.= 1) TFBS AC: RSP00682//OS: arabidopsis (Arabidopsis thaliana) /GENE: Adh/TFBS: -214 G-box (core) /BF: GBF3 Motifs on "-" Strand: Mean Exp. Number 0.00675 Up.Conf.Int. 1 Found 1 124 GaCACGTGtA 115 (Mism.= 2) TFBS AC: RSP00936//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: RbcS-3A/TFBS: G box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 114 TtaCACGTGTCA 125 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00222 Up.Conf.Int. 1 Found 1 125 TGaCACGTGTaA 114 (Mism.= 2) TFBS AC: RSP00938//OS: arabidopsis (Arabidopsis thaliana) /GENE: RbcS-1A/TFBS: G box-2 /BF: GBF Motifs on "-" Strand: Mean Exp. Number 0.00230 Up.Conf.Int. 1 Found 1 125 TGaCACGTGtAA 114 (Mism.= 2) TFBS AC: RSP00965//OS: potato, Solanum tuberosum /GENE: patatin/TFBS: G-box /BF: GBF Motifs on "+" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 115 TaCACGTGTC 124 (Mism.= 1) TFBS AC: RSP00974//OS: soybean (Glycine max) /GENE: vspB/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 115 TACACGTGtc 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 124 GACACGTGTA 115 (Mism.= 2) TFBS AC: RSP00981//OS: potato, Solanum tuberosum /GENE: PI-II/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00526 Up.Conf.Int. 1 Found 1 115 TACACGTGtc 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00453 Up.Conf.Int. 1 Found 1 124 GACACGTGTA 115 (Mism.= 2) TFBS AC: RSP01035//OS: arabidopsis (Arabidopsis thaliana) /GENE: RD29B/TFBS: ABRE 3 /BF: ABI3; ABI5; AREB1 Motifs on "+" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 118 ACGTGTC 124 (Mism.= 0) TFBS AC: RSP01151//OS: maize (Zea mays) /GENE: Em/TFBS: Em1a /BF: EmBP-1 (+VP1) Motifs on "-" Strand: Mean Exp. Number 0.00463 Up.Conf.Int. 1 Found 1 124 GACACGTGTA 115 (Mism.= 2) TFBS AC: RSP01152//OS: maize (Zea mays) /GENE: Em/TFBS: Em1b /BF: EmBP-1 (+VP1) Motifs on "+" Strand: Mean Exp. Number 0.00936 Up.Conf.Int. 1 Found 2 92 CACACGTatC 101 (Mism.= 2) 115 tACACGTGtC 124 (Mism.= 2) TFBS AC: RSP01255//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS2 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00995 Up.Conf.Int. 1 Found 1 116 ACACGTGt 123 (Mism.= 1) TFBS AC: RSP01256//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS3 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 116 ACACGTGT 123 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00172 Up.Conf.Int. 1 Found 1 123 ACACGTGT 116 (Mism.= 0) TFBS AC: RSP01288//OS: Arabidopsis (Arabidopsis thaliana) /GENE: cab1/TFBS: Z-DNA-motif /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00522 Up.Conf.Int. 1 Found 1 100 ATACGTGT 93 (Mism.= 0) TFBS AC: RSP01717//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF18 (At1g23750)/TFBS: G-box /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00297 Up.Conf.Int. 1 Found 1 114 tTACACGTGTcA 125 (Mism.= 2) TFBS AC: RSP01718//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IAA3/SHY2 (At1g04240)/TFBS: G/A-box (1) /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00879 Up.Conf.Int. 1 Found 1 125 TgACACGTgTAA 114 (Mism.= 2) TFBS AC: RSP01727//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At3g60690)/TFBS: G-box (2) /BF: STF1/HY5 Motifs on "+" Strand: Mean Exp. Number 0.00194 Up.Conf.Int. 1 Found 1 114 TtACACGTGTcA 125 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00194 Up.Conf.Int. 1 Found 1 125 TgACACGTGTaA 114 (Mism.= 2) TFBS AC: RSP01816//OS: tobacco (Nicotiana tabacum) /GENE: PNZIP/TFBS: G-box /BF: NtbZIP Motifs on "+" Strand: Mean Exp. Number 0.00240 Up.Conf.Int. 1 Found 1 115 taCACGTGTC 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00247 Up.Conf.Int. 1 Found 1 124 GaCACGTGTa 115 (Mism.= 2) TFBS AC: RSP01907//OS: Arabidopsis (Arabidopsis thaliana) /GENE: COX5b-2 (At1g80230)/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 115 tACACGTGTC 124 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00362 Up.Conf.Int. 1 Found 1 124 GACACGTGTa 115 (Mism.= 1) TFBS AC: RSP01942//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: G-box /BF: AtMYC2/JIN1 (ZBF1) Motifs on "+" Strand: Mean Exp. Number 0.00067 Up.Conf.Int. 1 Found 1 114 TtACACGTGtCA 125 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 125 TGACACGTGtaA 114 (Mism.= 2) TFBS AC: RSP01984//OS: Arabidopsis (Arabidopsis thaliana) /GENE: NIA1/TFBS: Myb-2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 138 GCCGTTG 132 (Mism.= 0) TFBS AC: RSP01986//OS: Arabidopsis (Arabidopsis thaliana) /GENE: LHY/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00390 Up.Conf.Int. 1 Found 1 115 taCACGTGTC 124 (Mism.= 2) TFBS AC: RSP02019//OS: Eucalyptus gunnii /GENE: EgCAD2/TFBS: MYBb /BF: MYB Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 155 GTTAGGTA 148 (Mism.= 0) TFBS AC: RSP02024//OS: CLCuMV DNA beta /GENE: betaC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 115 tACACGTGTc 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 124 gACACGTGTA 115 (Mism.= 1) TFBS AC: RSP02028//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bZIP28 BS /BF: bZIP28 Motifs on "-" Strand: Mean Exp. Number 0.00076 Up.Conf.Int. 1 Found 1 124 GACACGTG 117 (Mism.= 0) TFBS AC: RSP02038//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MFT/TFBS: G-box /BF: ABI3; ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00572 Up.Conf.Int. 1 Found 1 115 tACACGTGtC 124 (Mism.= 2) TFBS AC: RSP02063//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PSY/TFBS: G-box /BF: PIF1 Motifs on "+" Strand: Mean Exp. Number 0.00240 Up.Conf.Int. 1 Found 1 115 TaCACGTGtC 124 (Mism.= 2) TFBS AC: RSP02117//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtHsp90-1/TFBS: AP-1 BS /BF: AP-1 Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 145 TGAGTTAG 138 (Mism.= 0) TFBS AC: RSP02132//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: motif Y /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00317 Up.Conf.Int. 1 Found 1 92 CACACGTATC 101 (Mism.= 0) TFBS AC: RSP02295//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtERF11/TFBS: G-box /BF: OsHsfA2c; OsHsfA9 Motifs on "+" Strand: Mean Exp. Number 0.00094 Up.Conf.Int. 1 Found 1 114 ttACACGTGTCA 125 (Mism.= 2) TFBS AC: RSP02314//OS: tobacco (Nicotiana tabacum) /GENE: QPT2/TFBS: G-box (QPT2) /BF: NtMYC2 Motifs on "+" Strand: Mean Exp. Number 0.00821 Up.Conf.Int. 1 Found 1 116 ACACGTGT 123 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00821 Up.Conf.Int. 1 Found 1 123 ACACGTGT 116 (Mism.= 0) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "-" Strand: Mean Exp. Number 0.00119 Up.Conf.Int. 1 Found 1 229 GAAGAAGAA 221 (Mism.= 0) TFBS AC: RSP02428//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtNCED3/TFBS: G-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 124 GaCACGTGTa 115 (Mism.= 2) TFBS AC: RSP02444//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 124 GACACGTGtA 115 (Mism.= 1) TFBS AC: RSP02449//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC019/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00504 Up.Conf.Int. 1 Found 1 115 tACACGTGTC 124 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00445 Up.Conf.Int. 1 Found 1 124 gACACGTGTa 115 (Mism.= 2) TFBS AC: RSP02455//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "+" Strand: Mean Exp. Number 0.00570 Up.Conf.Int. 1 Found 1 115 TACACGTGTc 124 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00660 Up.Conf.Int. 1 Found 1 124 GACACGTGTA 115 (Mism.= 2) TFBS AC: RSP02457//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC055/TFBS: PIF7 BS2 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 124 GACACGTGtA 115 (Mism.= 1) TFBS AC: RSP02462//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS1 /BF: PIF7 Motifs on "-" Strand: Mean Exp. Number 0.00229 Up.Conf.Int. 1 Found 1 124 GACACGTGTa 115 (Mism.= 1) TFBS AC: RSP02465//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ANAC072/TFBS: PIF7 BS2 /BF: CBF1; CBF2; CBF3; CBF4 Motifs on "-" Strand: Mean Exp. Number 0.00482 Up.Conf.Int. 1 Found 1 124 GACACGTGtA 115 (Mism.= 1) TFBS AC: RSP02622//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE5 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 117 CACGTGTC 124 (Mism.= 0) TFBS AC: RSP02747//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 1 (IRX8) /BF: MYB46 Motifs on "+" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 148 TACCTAAC 155 (Mism.= 0) TFBS AC: RSP02803//OS: rose (Rosa hybrid) /GENE: RhNAC3/TFBS: ABRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00447 Up.Conf.Int. 1 Found 1 118 ACGTGTC 124 (Mism.= 0) TFBS AC: RSP02813//OS: Eucalyptus gunnii /GENE: EgCAD/TFBS: AC element 2 (EgCAD) /BF: EgMYB2 Motifs on "-" Strand: Mean Exp. Number 0.00701 Up.Conf.Int. 1 Found 1 155 GTTAGGTA 148 (Mism.= 0) TFBS AC: RSP02900//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL1 BS /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 115 tACACGTGtC 124 (Mism.= 2) Motifs on "-" Strand: Mean Exp. Number 0.00321 Up.Conf.Int. 1 Found 1 124 GACACGTGta 115 (Mism.= 2) TFBS AC: RSP02901//OS: Arabidopsis (Arabidopsis thaliana) /GENE: OLE1/TFBS: GBL2 /BF: B3 AFL TFs Motifs on "+" Strand: Mean Exp. Number 0.00406 Up.Conf.Int. 1 Found 1 115 tACACGTGtC 124 (Mism.= 2) TFBS AC: RSP02914//OS: common morning glory (Ipomoea purpurea) /GENE: CHS-D us1/TFBS: IpMYB1 BS1 /BF: IpMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00939 Up.Conf.Int. 1 Found 1 85 TAGCTACCAc 94 (Mism.= 1) Totally 69 motifs of 52 different TFBSs have been found ____________________________________________________________ >PLPR0559..AC:M20363..OS:Glycine max..GENE:Gmhsp26-A..PROD:heat shock protein ..[ -200: +51] ..CDS: +73..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.31 G - 0.14 T - 0.33 C - 0.22 TFBS AC: RSP00103//OS: Agrobacterium tumefaciens /GENE: nos/TFBS: Z element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 143 GCAgATACGT 134 (Mism.= 1) TFBS AC: RSP00211//OS: parsley, Petroselinum crispum /GENE: pr2/TFBS: HD-BS /BF: HD protein Motifs on "+" Strand: Mean Exp. Number 0.00896 Up.Conf.Int. 1 Found 1 124 CTAATTGaTTA 134 (Mism.= 1) TFBS AC: RSP00503//OS: tobacco (Nicotiana tabacum) /GENE: Ntltp1/TFBS: D1 box /BF: Different bZIP factors, including RITA-1 Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 150 CTAGCTAG 157 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 157 CTAGCTAG 150 (Mism.= 0) TFBS AC: RSP01205//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCRC/TFBS: EM2 (CArG box 2) /BF: MADS box proteins Motifs on "+" Strand: Mean Exp. Number 0.00833 Up.Conf.Int. 1 Found 1 239 CCTTTTGAAG 248 (Mism.= 1) TFBS AC: RSP01642//OS: tobacco (Nicotiana tabacum) /GENE: WIPK/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00640 Up.Conf.Int. 1 Found 1 1 cAATGTCTCC 10 (Mism.= 1) TFBS AC: RSP02175//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp11/III /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00319 Up.Conf.Int. 1 Found 1 182 GAGAATAC 189 (Mism.= 0) TFBS AC: RSP02196//OS: tomato (Lycopersicon esculentum) /GENE: LeMAN4/TFBS: CArG (LeMAN4) /BF: RIN Motifs on "-" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 182 CCTTTTATAG 173 (Mism.= 1) TFBS AC: RSP02721//OS: rice (Oryza sativa) /GENE: AK065090/TFBS: IDE2 (1) /BF: IDEF2 Motifs on "-" Strand: Mean Exp. Number 0.00878 Up.Conf.Int. 1 Found 1 238 aACAAGTATaG 228 (Mism.= 2) TFBS AC: RSP02980//OS: tomato (Solanum lycopersicum) /GENE: alpha-Man/TFBS: CArG box/2 /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00779 Up.Conf.Int. 1 Found 1 173 CTATAAAAGG 182 (Mism.= 1) Totally 10 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0560..AC:X60159..OS:Glycine max..GENE:N-20..PROD:nodulin-20..[ -200: +51] ..CDS: +25..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.36 C - 0.14 TFBS AC: RSP00366//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: ERE /BF: TDBA12 Motifs on "-" Strand: Mean Exp. Number 0.00932 Up.Conf.Int. 1 Found 1 56 TGcCTTTCTaAC 45 (Mism.= 2) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "-" Strand: Mean Exp. Number 0.00742 Up.Conf.Int. 1 Found 1 199 TCATGtATGT 190 (Mism.= 1) TFBS AC: RSP01978//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLS2/TFBS: FLS2 EIN3/EIL1 BS(P) /BF: EIN3/EIL1 Motifs on "-" Strand: Mean Exp. Number 0.00831 Up.Conf.Int. 1 Found 1 197 ATGTATGT 190 (Mism.= 0) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00561 Up.Conf.Int. 1 Found 1 231 GTGGTATTAA 240 (Mism.= 2) TFBS AC: RSP02307//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: WRKY28 BS (m2.1) /BF: WRKY28 Motifs on "-" Strand: Mean Exp. Number 0.00404 Up.Conf.Int. 1 Found 1 95 ATCcTGACtCAT 84 (Mism.= 2) TFBS AC: RSP02591//OS: Arabidopsis (Arabidopsis thaliana) /GENE: KNU/TFBS: PRE1 (AG1) /BF: AGAMOUS Motifs on "+" Strand: Mean Exp. Number 0.00420 Up.Conf.Int. 1 Found 1 50 AAAGGCAA 57 (Mism.= 0) TFBS AC: RSP02960//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BAS1 (At2g26710)/TFBS: E-box B /BF: BZR1; ARF7 Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 88 CTCATTTGcT 79 (Mism.= 1) Totally 7 motifs of 7 different TFBSs have been found ____________________________________________________________ >PLPR0561..AC:AF081457..OS:Pisum sativum..GENE:rcpme1..PROD:pectin methylesterase..[ -200: +51] ..CDS: +394 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.16 T - 0.33 C - 0.12 TFBS AC: RSP01139//OS: maize (Zea mays) /GENE: Adh1/TFBS: Region B1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00720 Up.Conf.Int. 1 Found 1 119 ATGTGGTTT 111 (Mism.= 1) TFBS AC: RSP01182//OS: pea (Pisum sativum) /GENE: GS3A/TFBS: GS3A-F1 BS /BF: GS3A-F1 Motifs on "+" Strand: Mean Exp. Number 0.00296 Up.Conf.Int. 1 Found 1 187 TTGATCaAGTAtAcAAA 203 (Mism.= 3) TFBS AC: RSP01191//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: A-box /BF: A factor Motifs on "+" Strand: Mean Exp. Number 0.00382 Up.Conf.Int. 1 Found 1 114 CCACATGC 121 (Mism.= 1) TFBS AC: RSP02011//OS: rice (Oryza sativa) /GENE: BRI1/TFBS: E-box (BRI1, P1_1) /BF: RAVL1 Motifs on "+" Strand: Mean Exp. Number 0.00930 Up.Conf.Int. 1 Found 1 113 ACCACATGCT 122 (Mism.= 2) TFBS AC: RSP02102//OS: maize (Zea mays) /GENE: A1/TFBS: P (-108) element /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00320 Up.Conf.Int. 1 Found 1 117 GTGGTTTTCA 108 (Mism.= 2) TFBS AC: RSP02525//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 1 /BF: IPA1 Motifs on "-" Strand: Mean Exp. Number 0.00995 Up.Conf.Int. 1 Found 1 84 ATGTACTA 77 (Mism.= 0) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0562..AC:X90996..OS:Pisum sativum..GENE:GR..PROD:glutathione reductase..[ -200: +51] ..CDS: +383 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.41 G - 0.14 T - 0.34 C - 0.11 TFBS AC: RSP00241//OS: maize (Zea mays) /GENE: Bronze2/TFBS: C1-motif (2) /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00815 Up.Conf.Int. 1 Found 1 80 CGGTCA 75 (Mism.= 0) TFBS AC: RSP00288//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Motif VI /BF: epicotyl-specific nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 37 TGGTCC 42 (Mism.= 0) TFBS AC: RSP00467//OS: carnation, Dianthus caryophyylus /GENE: hcbt2/TFBS: ERE1 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00894 Up.Conf.Int. 1 Found 1 80 CGGTCAATTA 71 (Mism.= 2) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00857 Up.Conf.Int. 1 Found 1 130 TAAATGCA 123 (Mism.= 0) TFBS AC: RSP01190//OS: Tobacco; Nicotiana tabacum /GENE: Adhl/TFBS: C-box /BF: C factor Motifs on "-" Strand: Mean Exp. Number 0.00191 Up.Conf.Int. 1 Found 1 83 CCCCGGTCAA 74 (Mism.= 2) TFBS AC: RSP01213//OS: Lepidium africanum /GENE: LaCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 114 CCATTGATTTAC 103 (Mism.= 2) TFBS AC: RSP01218//OS: Brassica oleracea /GENE: BoCRC/TFBS: CL3 /BF: LFY Motifs on "-" Strand: Mean Exp. Number 0.00236 Up.Conf.Int. 1 Found 1 114 CCATTGATTTAC 103 (Mism.= 2) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "-" Strand: Mean Exp. Number 0.00122 Up.Conf.Int. 1 Found 1 39 CCAAAATGT 31 (Mism.= 0) TFBS AC: RSP01744//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtCMPG1 (At3g02840)/TFBS: WRKY11 BS /BF: WRKY11 Motifs on "+" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 72 AATTGACCGggG 83 (Mism.= 2) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0563..AC:X05024..OS:Glycine max..GENE:N-22..PROD:nodulin-22..[ -200: +51] ..CDS: +61..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.38 G - 0.13 T - 0.35 C - 0.14 TFBS AC: RSP00196//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt3/TFBS: Box II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00836 Up.Conf.Int. 1 Found 1 227 CTTTTGaGaACtTTA 213 (Mism.= 3) TFBS AC: RSP00366//OS: tobacco (Nicotiana tabacum) /GENE: CHN50/TFBS: ERE /BF: TDBA12 Motifs on "-" Strand: Mean Exp. Number 0.00881 Up.Conf.Int. 1 Found 1 51 TGtCTTTCTaAC 40 (Mism.= 2) TFBS AC: RSP01614//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: accD P-box /BF: GmDof4 Motifs on "+" Strand: Mean Exp. Number 0.00787 Up.Conf.Int. 1 Found 1 209 CcAAtAAAGTTCT 221 (Mism.= 2) TFBS AC: RSP02386//OS: Arabidopsis (Arabidopsis thaliana) /GENE: H4A748/TFBS: NON /BF: NtWLIM2 Motifs on "+" Strand: Mean Exp. Number 0.00896 Up.Conf.Int. 1 Found 1 102 AGATCaAaGGT 112 (Mism.= 2) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0564..AC:AB009385..OS:Pyrus serotina..GENE:S4-RNase..PROD:S4-RNase..[ -200: +51] ..CDS: +93..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.32 C - 0.17 TFBS AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/TFBS: RY4 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 137 CATGCATG 144 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 144 CATGCATG 137 (Mism.= 0) TFBS AC: RSP00350//OS: maize (Zea mays) /GENE: C1/TFBS: VP1 RE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 148 CGTaCATGCAT 138 (Mism.= 1) TFBS AC: RSP00895//OS: Geminiviruses (Nicotiana species); Pepper Huasteco Virus (PHV) /GENE: Intergenic Regions; PHV coat protein (CP)/TFBS: CLE-core /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 1 119 GTGGACCC 126 (Mism.= 1) TFBS AC: RSP01074//OS: Arachis hypogea; bean (Phaseolus vulgaris); /GENE: Em/TFBS: Sph /BF: PvAlf Motifs on "+" Strand: Mean Exp. Number 0.00226 Up.Conf.Int. 1 Found 1 136 GCATGCATGt 145 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00226 Up.Conf.Int. 1 Found 1 145 ACATGCATGC 136 (Mism.= 1) TFBS AC: RSP01169//OS: Vicia faba /GENE: LeB4/TFBS: Legumin box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 137 CATGCATG 144 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 144 CATGCATG 137 (Mism.= 0) TFBS AC: RSP01296//OS: oat (Avena fatua) /GENE: Amy2/D/TFBS: TATA box /BF: TBF Motifs on "+" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 168 CTATAAATA 176 (Mism.= 0) TFBS AC: RSP01452//OS: rice (Oryza sativa) /GENE: Ehd1/TFBS: A flowering promoting gene from Oryza sativa. /BF: OsLFL1 Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 137 CATGCATG 144 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 144 CATGCATG 137 (Mism.= 0) TFBS AC: RSP01470//OS: maize (Zea mays) /GENE: alpha-22kDa zein/TFBS: Z2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00767 Up.Conf.Int. 1 Found 2 92 TCATGgATGT 101 (Mism.= 1) 136 gCATGCATGT 145 (Mism.= 1) TFBS AC: RSP01714//OS: Arabidopsis (Arabidopsis thaliana) /GENE: REH1/PIN3 (At1g70940)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00455 Up.Conf.Int. 1 Found 1 93 GaTCACGTATaT 82 (Mism.= 2) TFBS AC: RSP01715//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ARF6 (At1g30330)/TFBS: G/A-box /BF: STF1/HY5 Motifs on "-" Strand: Mean Exp. Number 0.00886 Up.Conf.Int. 1 Found 1 93 gAtCACGTATAT 82 (Mism.= 2) TFBS AC: RSP02173//OS: soybean (Glycine max) /GENE: CHS8/TFBS: Fp7/II /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00189 Up.Conf.Int. 1 Found 1 159 GtaGGCATATGC 148 (Mism.= 2) TFBS AC: RSP02210//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: P1BS (SmPT5) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 148 GCATATGC 155 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 155 GCATATGC 148 (Mism.= 0) TFBS AC: RSP02213//OS: tobacco (Nicotiana tabacum) /GENE: NtPT5/TFBS: P1BS (NtPT5) /BF: PHR1 (P1) Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 148 GCATATGC 155 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 155 GCATATGC 148 (Mism.= 0) TFBS AC: RSP02527//OS: rice (Oryza sativa, japonica) /GENE: LOG/TFBS: GTAC-motif /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00931 Up.Conf.Int. 1 Found 1 163 TAGTACTA 170 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00931 Up.Conf.Int. 1 Found 1 170 TAGTACTA 163 (Mism.= 0) TFBS AC: RSP02708//OS: rice (Oryza sativa, japonica) /GENE: Ehd1/TFBS: RY /BF: BF (OsLFL1) Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 137 CATGCATG 144 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 144 CATGCATG 137 (Mism.= 0) TFBS AC: RSP02732//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtIPS1/TFBS: P1BS /BF: PHR1 Motifs on "+" Strand: Mean Exp. Number 0.00223 Up.Conf.Int. 1 Found 1 147 CGCATATgCC 156 (Mism.= 1) TFBS AC: RSP02746//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FRA8/TFBS: MYB46 BS (FRA8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00385 Up.Conf.Int. 1 Found 1 121 CACCAAAT 114 (Mism.= 0) TFBS AC: RSP02801//OS: soybean (Glycine max) /GENE: beta-conglycinin (alpha)/TFBS: RY /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 137 CATGCATG 144 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00228 Up.Conf.Int. 1 Found 1 144 CATGCATG 137 (Mism.= 0) Totally 28 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0565..AC:AF126810..OS:Nicotiana tabacum..GENE:NtPMT1a..PROD:Putrescine N-methyltransferase..[ -200: +51] ..CDS: +74 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.34 G - 0.15 T - 0.32 C - 0.19 TFBS AC: RSP00421//OS: maize (Zea mays) /GENE: rab17/TFBS: DRE1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00756 Up.Conf.Int. 1 Found 1 55 ACCGAGA 61 (Mism.= 0) TFBS AC: RSP00473//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS3 /BF: Alfin1 Motifs on "-" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 27 tATGTGTGTGcTC 15 (Mism.= 2) TFBS AC: RSP00621//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS2/TFBS: C-rich Q /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00824 Up.Conf.Int. 1 Found 1 150 CCaCTCCTC 158 (Mism.= 1) TFBS AC: RSP00642//OS: arabidopsis (Arabidopsis thaliana) /GENE: PDF1/TFBS: L1-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00942 Up.Conf.Int. 1 Found 1 176 TAAATGCA 183 (Mism.= 0) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 12 TTCTCTCTCCa 2 (Mism.= 1) TFBS AC: RSP00863//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-4 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 1 5 AGAGAGaAA 13 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00842 Up.Conf.Int. 1 Found 2 3 gGAGAGAGA 11 (Mism.= 1) 5 AGAGAGAaA 13 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00452 Up.Conf.Int. 1 Found 1 3 GGAGAGAGA 11 (Mism.= 0) TFBS AC: RSP00866//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: G-box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00101 Up.Conf.Int. 1 Found 1 101 GCACGTTG 108 (Mism.= 0) TFBS AC: RSP00867//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: GCC-box /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00074 Up.Conf.Int. 1 Found 1 142 TGCGCCCT 149 (Mism.= 0) TFBS AC: RSP00868//OS: tobacco (Nicotiana tabacum) /GENE: NiPMT1a/TFBS: TA-rich motif /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00992 Up.Conf.Int. 1 Found 1 124 TATTATATTATA 135 (Mism.= 0) TFBS AC: RSP00879//OS: barley (Hordeum vulgare) /GENE: Al21/TFBS: D2 /BF: DOF Motifs on "-" Strand: Mean Exp. Number 0.00654 Up.Conf.Int. 1 Found 1 217 CGAAAGC 211 (Mism.= 0) TFBS AC: RSP00953//OS: arabidopsis (Arabidopsis thaliana) /GENE: ATHB6/TFBS: ATHB6 BS /BF: ATHB6 Motifs on "-" Strand: Mean Exp. Number 0.00511 Up.Conf.Int. 1 Found 1 53 CAATTATTA 45 (Mism.= 0) TFBS AC: RSP01351//OS: Arabidopsis (Arabidopsis thaliana) /GENE: APX1/TFBS: DNase I footprint /BF: CPRF1 Motifs on "+" Strand: Mean Exp. Number 0.00409 Up.Conf.Int. 1 Found 1 141 tTGcGCCCTCC 151 (Mism.= 2) TFBS AC: RSP01475//OS: rice (Oryza sativa) /GENE: GluA-3/TFBS: GCAA-like motif /BF: Unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00179 Up.Conf.Int. 1 Found 1 80 CCAAAATGT 88 (Mism.= 0) TFBS AC: RSP01967//OS: rice (Oryza sativa) /GENE: SAG39/TFBS: E3.2 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00144 Up.Conf.Int. 1 Found 1 8 CTCTCCAT 1 (Mism.= 0) TFBS AC: RSP02699//OS: cotton (Gossypium hirsutum) /GENE: RLC1/TFBS: G-box /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00784 Up.Conf.Int. 1 Found 1 100 TGCACGTtGt 109 (Mism.= 2) Totally 18 motifs of 17 different TFBSs have been found ____________________________________________________________ >PLPR0566..AC:X61915..OS:Pinus thunbergii..GENE:LHC cab-6..PROD:light-harvesting complex chlorophyll a/b-binding protein..[ -200: +51] ..CDS: +69 |Other Plants Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.29 G - 0.23 T - 0.27 C - 0.20 TFBS AC: RSP00057//OS: maize (Zea mays) /GENE: rab28/TFBS: ABRE B /BF: ABF Motifs on "-" Strand: Mean Exp. Number 0.00690 Up.Conf.Int. 1 Found 1 102 TCCACaTCTC 93 (Mism.= 1) TFBS AC: RSP00379//OS: Lemna gibba /GENE: Lhcb2 (cabAB19)/TFBS: LS7 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00339 Up.Conf.Int. 1 Found 1 142 CGGATAaGGC 151 (Mism.= 1) TFBS AC: RSP00574//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS1/TFBS: AT-rich K /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00655 Up.Conf.Int. 1 Found 1 200 CAGAATAA 207 (Mism.= 0) TFBS AC: RSP01031//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapB/TFBS: AE box 2 /BF: AEF Motifs on "-" Strand: Mean Exp. Number 0.00585 Up.Conf.Int. 1 Found 1 16 AGAATCTT 9 (Mism.= 0) TFBS AC: RSP01237//OS: bean (Phaseolus vulgaris) /GENE: BAC/TFBS: -23 Z-BAC+ /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00443 Up.Conf.Int. 1 Found 1 166 CgCTATATAT 175 (Mism.= 1) Totally 5 motifs of 5 different TFBSs have been found ____________________________________________________________ >PLPR0567..AC:unknown [PMID:15563624]..OS:Betula pendula..GENE:Bplti36..PROD:low temperature-induced protein..[ -200: +51] ..CDS: +312..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.44 G - 0.18 T - 0.30 C - 0.08 TFBS AC: RSP00056//OS: Brassica napus /GENE: napA/TFBS: ABRE Bd /BF: ABI3 Motifs on "+" Strand: Mean Exp. Number 0.00663 Up.Conf.Int. 1 Found 1 163 GaCAgTTGTC 172 (Mism.= 2) TFBS AC: RSP00289//OS: oat, Avena sativa /GENE: phyA3/TFBS: "-381 sequence" /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00139 Up.Conf.Int. 1 Found 1 135 GAAATAGCAAAgGTTAAAAATA 156 (Mism.= 1) TFBS AC: RSP00299//OS: tobacco (Nicotiana benthamiana) /GENE: PCNA/TFBS: E2F-2 /BF: E2F Motifs on "-" Strand: Mean Exp. Number 0.00731 Up.Conf.Int. 1 Found 1 192 ATaCtCGCCAAT 181 (Mism.= 2) TFBS AC: RSP00727//OS: tobacco (Nicotiana tabacum) /GENE: Ubi.U4/TFBS: U-box /BF: unknown transcription factors Motifs on "-" Strand: Mean Exp. Number 0.00283 Up.Conf.Int. 1 Found 1 176 GCTTGAC 170 (Mism.= 0) TFBS AC: RSP01234//OS: Collettrichum lindemuthianum (bean pathogen) /GENE: CLPG2/TFBS: PLE-71 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00714 Up.Conf.Int. 1 Found 1 171 TCAAGCA 177 (Mism.= 0) TFBS AC: RSP01503//OS: wheat (Triticum aestivum) /GENE: H1 (TH315)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 206 AATCCGaG 213 (Mism.= 1) TFBS AC: RSP01504//OS: wheat (Triticum aestivum) /GENE: H1 (TH325)/TFBS: Oct-d /BF:unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00809 Up.Conf.Int. 1 Found 1 206 AATCCGaG 213 (Mism.= 1) TFBS AC: RSP02526//OS: rice (Oryza sativa, japonica) /GENE: OsTB1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 106 TTGTACTA 113 (Mism.= 0) TFBS AC: RSP02529//OS: rice (Oryza sativa, japonica) /GENE: DEP1/TFBS: GTAC-motif 2 /BF: IPA1 Motifs on "+" Strand: Mean Exp. Number 0.00560 Up.Conf.Int. 1 Found 1 106 TTGTACTA 113 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0568..AC:Z54183..OS:Petroselinum crispum..GENE:CCoAOMT gene..PROD:trans-coffeoyl-CoAO-methyltransferase..[ -200: +51] ..CDS: +0 |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.12 T - 0.27 C - 0.28 TFBS AC: RSP00286//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 82 TCTCACCaACC 92 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 111 TtTCACCaACC 101 (Mism.= 2) TFBS AC: RSP00950//OS: parsley, Petroselinum crispum /GENE: 4CL-1/TFBS: CTCACCAACCC motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00864 Up.Conf.Int. 1 Found 1 83 CTCACCAACCg 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00116 Up.Conf.Int. 1 Found 1 110 tTCACCAACCC 100 (Mism.= 1) TFBS AC: RSP01015//OS: arabidopsis (Arabidopsis thaliana) /GENE: GapA/TFBS: Gap box 3 /BF: GAPF Motifs on "-" Strand: Mean Exp. Number 0.00697 Up.Conf.Int. 1 Found 1 195 gAAATGAAAG 186 (Mism.= 1) TFBS AC: RSP01044//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box L /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00130 Up.Conf.Int. 1 Found 1 82 TCTCACCAACCG 93 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00078 Up.Conf.Int. 1 Found 1 111 TtTCACCAACCc 100 (Mism.= 2) TFBS AC: RSP01045//OS: parsley (Petroselinum crispum) /GENE: CCoAOMT/TFBS: box E /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00699 Up.Conf.Int. 1 Found 1 59 GGACCCATCAAG 70 (Mism.= 0) TFBS AC: RSP01079//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L1 /BF: DcMYB1 Motifs on "-" Strand: Mean Exp. Number 0.00048 Up.Conf.Int. 1 Found 1 111 tTTCACCaACCC 100 (Mism.= 2) TFBS AC: RSP01083//OS: carrot (Daucus carota) /GENE: DcPAL1/TFBS: box-L5 /BF: DcMYB1 Motifs on "+" Strand: Mean Exp. Number 0.00216 Up.Conf.Int. 1 Found 1 82 TCTCACCAACCg 93 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 1 111 TtTCACCAACCC 100 (Mism.= 1) TFBS AC: RSP01184//OS: Various plants /GENE: chsA/TFBS: box 1 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00487 Up.Conf.Int. 1 Found 1 82 TCTCACCaACCG 93 (Mism.= 1) TFBS AC: RSP01454//OS: pine (Pinus taeda) /GENE: Synthetic oligonucleotides/TFBS: AC-II /BF: PtMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 107 ACCAACC 101 (Mism.= 0) TFBS AC: RSP01754//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: GmMYB92 BS3 /BF: GmMYB92 Motifs on "+" Strand: Mean Exp. Number 0.00740 Up.Conf.Int. 1 Found 1 82 TCTCACCaACC 92 (Mism.= 1) Motifs on "-" Strand: Mean Exp. Number 0.00285 Up.Conf.Int. 1 Found 1 111 TtTCACCaACC 101 (Mism.= 2) TFBS AC: RSP02131//OS: carrot (Daucus carota) /GENE: DcECP31/TFBS: At-MYB2 BS /BF: DcBZ1 Motifs on "+" Strand: Mean Exp. Number 0.00105 Up.Conf.Int. 1 Found 1 51 CAaACGTGGG 60 (Mism.= 1) TFBS AC: RSP02138//OS: maize (Zea mays) /GENE: ZmCOMT/TFBS: AC-II /BF: ZmMYB31 Motifs on "+" Strand: Mean Exp. Number 0.00396 Up.Conf.Int. 1 Found 1 83 CTCACCAACCgCa 95 (Mism.= 2) TFBS AC: RSP02326//OS: Arabidopsis (Arabidopsis thaliana) /GENE: BiP2/TFBS: TL1 /BF: TBF1 Motifs on "+" Strand: Mean Exp. Number 0.00048 Up.Conf.Int. 1 Found 1 231 GAAGAAGAA 239 (Mism.= 0) TFBS AC: RSP02330//OS: poplar (Populus trichocarpa) /GENE: Synthetic oligonucleotides/TFBS: SMRE 4 /BF: PtrMYB3; PtrMYB20; PtrMYB2; PtrMYB21 Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 107 ACCAACC 101 (Mism.= 0) TFBS AC: RSP02414//OS: rice (Oryza sativa. japonica) /GENE: BDP 2-273/TFBS: CRE 36-39 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00977 Up.Conf.Int. 1 Found 1 184 TTCTTTCA 191 (Mism.= 0) TFBS AC: RSP02492//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (5) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00963 Up.Conf.Int. 1 Found 1 107 ACCAAC 102 (Mism.= 0) TFBS AC: RSP02566//OS: Arabidopsis (Arabidopsis thaliana) /GENE: FLD/TFBS: BRRE /BF: BZR1 Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 53 AaCGTGGGAc 62 (Mism.= 2) TFBS AC: RSP02589//OS: white spruce (Picea glauca [Moench] Voss) /GENE: PgDHS2/TFBS: AC-II /BF: PgMYB8 Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 107 ACCAACC 101 (Mism.= 0) TFBS AC: RSP02643//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: TCP20 BS /BF: TCP20 Motifs on "+" Strand: Mean Exp. Number 0.00761 Up.Conf.Int. 1 Found 1 56 GTGGGACCca 65 (Mism.= 2) TFBS AC: RSP02748//OS: Arabidopsis (Arabidopsis thaliana) /GENE: IRX8/TFBS: MYB46 BS 2 (IRX8) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00664 Up.Conf.Int. 1 Found 1 108 CACCAAcC 101 (Mism.= 1) TFBS AC: RSP02752//OS: Arabidopsis (Arabidopsis thaliana) /GENE: PAL1/TFBS: MYB46 BS2 (PAL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 108 CACCAACC 101 (Mism.= 0) TFBS AC: RSP02753//OS: Arabidopsis (Arabidopsis thaliana) /GENE: 4CL1/TFBS: MYB46 BS (4CL1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 108 CACCAACC 101 (Mism.= 0) TFBS AC: RSP02754//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS1 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00751 Up.Conf.Int. 1 Found 1 108 cACCAACC 101 (Mism.= 1) TFBS AC: RSP02755//OS: Arabidopsis (Arabidopsis thaliana) /GENE: HCT/TFBS: MYB46 BS2 (HCT) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 108 CACCaACC 101 (Mism.= 1) TFBS AC: RSP02756//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS1 (CCoAOMT1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 108 CACCAACC 101 (Mism.= 0) TFBS AC: RSP02757//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCoAOMT1/TFBS: MYB46 BS2 (CCoAOMT1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00413 Up.Conf.Int. 1 Found 1 108 CACCaACC 101 (Mism.= 1) TFBS AC: RSP02759//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CCR1/TFBS: MYB46 BS2 (CCR1) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 108 CACCAACC 101 (Mism.= 0) TFBS AC: RSP02760//OS: Arabidopsis (Arabidopsis thaliana) /GENE: CAD6/TFBS: MYB46 BS (CAD6) /BF: MYB46 Motifs on "-" Strand: Mean Exp. Number 0.00363 Up.Conf.Int. 1 Found 1 108 CACCAACC 101 (Mism.= 0) TFBS AC: RSP02888//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: bHLH/GATA/MADS/3RMYB/NAC BS /BF: bHLH, GATA, MADS, 3RMYB, NAC Motifs on "+" Strand: Mean Exp. Number 0.00045 Up.Conf.Int. 1 Found 1 53 AACGTGGG 60 (Mism.= 0) TFBS AC: RSP02904//OS: rice (Oryza sativa) /GENE: Os01t0182700/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 107 ACCAACC 101 (Mism.= 0) TFBS AC: RSP02906//OS: rice (Oryza sativa) /GENE: Os05t0499400/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 107 ACCAACC 101 (Mism.= 0) TFBS AC: RSP02907//OS: rice (Oryza sativa) /GENE: Os10t0474900/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 101 GGTTGGT 107 (Mism.= 0) TFBS AC: RSP02908//OS: rice (Oryza sativa) /GENE: Os11to4358/TFBS: OsMYB4 BS /BF: OsMYB4 Motifs on "-" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 107 ACCAACC 101 (Mism.= 0) TFBS AC: RSP02917//OS: pear (Pyrus bretschneideri) /GENE: PbANR/TFBS: PbMYB9 BS /BF: PbMYB9 Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 102 GTTGGTG 108 (Mism.= 0) TFBS AC: RSP02945//OS: maize (Zea mays) /GENE: CRY2/TFBS: MYB59 /BF: MYB59 Motifs on "-" Strand: Mean Exp. Number 0.00605 Up.Conf.Int. 1 Found 1 107 ACCAACCC 100 (Mism.= 1) TFBS AC: RSP02958//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ICS1/TFBS: TCP8 BS /BF: TCP8 Motifs on "+" Strand: Mean Exp. Number 0.00304 Up.Conf.Int. 1 Found 1 56 GTGGGACC 63 (Mism.= 1) Totally 41 motifs of 36 different TFBSs have been found ____________________________________________________________ >PLPR0569..AC:X66135..OS:Spinacia oleracea..GENE:rps1..ACPROD:chloroplastic ribosomal protein S1 {+350:+50}..AC ..CDS: +0 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.11 T - 0.24 C - 0.32 TFBS AC: RSP00450//OS: bean, Phaseolus vulgaris /GENE: CHS/TFBS: AIV /BF: Unknown nuclear protein Motifs on "-" Strand: Mean Exp. Number 0.00544 Up.Conf.Int. 1 Found 1 115 cCAAcAATATGC 104 (Mism.= 2) TFBS AC: RSP00631//OS: spinach (Spinacia oleracea), Spinacia oleracea /GENE: RPL21/TFBS: CII /BF: S2F Motifs on "+" Strand: Mean Exp. Number 0.00019 Up.Conf.Int. 1 Found 1 101 TGTGcaTATTGTT 113 (Mism.= 2) TFBS AC: RSP00694//OS: rice (Oryza sativa), Oryza sativa /GENE: Gt1/TFBS: AACAA motif /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00893 Up.Conf.Int. 1 Found 1 135 AACAACCTCTCTC 147 (Mism.= 2) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00206 Up.Conf.Int. 1 Found 1 177 AGAGAGAGA 169 (Mism.= 0) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00278 Up.Conf.Int. 1 Found 1 179 GGAGAGAGA 171 (Mism.= 0) TFBS AC: RSP02034//OS: Arabidopsis (Arabidopsis thaliana) /GENE: YUC4 (At5g11320)/TFBS: STY1 BS (YUC4) /BF: STY1 Motifs on "+" Strand: Mean Exp. Number 0.00348 Up.Conf.Int. 1 Found 1 178 CcACTCTACTC 188 (Mism.= 1) TFBS AC: RSP02168//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: LBS /BF: LUX Motifs on "-" Strand: Mean Exp. Number 0.00133 Up.Conf.Int. 1 Found 1 208 AGATACGC 201 (Mism.= 0) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00373 Up.Conf.Int. 1 Found 1 179 GGAGAGAGAG 170 (Mism.= 0) TFBS AC: RSP02858//OS: Arabidopsis (Arabidopsis thaliana) /GENE: AtPES/TFBS: site-II motif 1 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00762 Up.Conf.Int. 1 Found 1 113 TGGGCC 118 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0570..AC:M13938..OS:Lycopersicon esculentum..GENE:proteinase inhibitor I gene..PROD:Proteinase inhibitor I..[ -200: +51] ..CDS: +36..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.28 G - 0.12 T - 0.36 C - 0.24 TFBS AC: RSP00188//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm1/TFBS: ABRE/1.2 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 104 TCAACGTGTG 113 (Mism.= 1) TFBS AC: RSP00471//OS: alfalfa (Medicago sativa) /GENE: MSPRP2/TFBS: Alfin1 BS1 /BF: Alfin1 Motifs on "+" Strand: Mean Exp. Number 0.00091 Up.Conf.Int. 1 Found 1 178 GTGTGGTGCAC 188 (Mism.= 2) TFBS AC: RSP00739//OS: pea (Pisum sativum) /GENE: PSPAL2/TFBS: Box 1 homolog (2) /BF: epicotyl-specific nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00281 Up.Conf.Int. 1 Found 1 124 TgTCTAaCAACC 113 (Mism.= 2) TFBS AC: RSP01003//OS: snapdragon (Antirrhinum majus) /GENE: DEFH125/TFBS: CArG1 /BF: DEF/GLO Motifs on "+" Strand: Mean Exp. Number 0.00681 Up.Conf.Int. 1 Found 1 148 ACAATgAAGG 157 (Mism.= 1) TFBS AC: RSP02398//OS: Tamarix hispida /GENE: ThWRKY4/TFBS: ABRE /BF: ThABF8 Motifs on "+" Strand: Mean Exp. Number 0.00103 Up.Conf.Int. 1 Found 1 106 AACGTGTG 113 (Mism.= 0) TFBS AC: RSP02662//OS: Eutrema salsugineum /GENE: EsCathB3/TFBS: G-box /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00064 Up.Conf.Int. 1 Found 1 103 TTCAACGTGtgG 114 (Mism.= 2) Totally 6 motifs of 6 different TFBSs have been found ____________________________________________________________ >PLPR0571..AC:X13437..OS:Lycopersicon esculentum..GENE:ethylene-responsive fruit ripening gene E8..PROD:E8 protein..[ -200: +51] ..CDS: +36 ... |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.30 G - 0.14 T - 0.41 C - 0.16 TFBS AC: RSP00163//OS: soybean (Glycine max) /GENE: synthetic oligonucleotides/TFBS: DR5 /BF: ARF1 Motifs on "+" Strand: Mean Exp. Number 0.00325 Up.Conf.Int. 1 Found 1 76 aCTTTTGTCTC 86 (Mism.= 1) TFBS AC: RSP00444//OS: maize /GENE: cyPPDK1/TFBS: box d /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00333 Up.Conf.Int. 1 Found 1 148 AAcAAAGAAAGAgA 135 (Mism.= 2) TFBS AC: RSP00861//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-2 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00411 Up.Conf.Int. 1 Found 2 143 AGAAAGAGA 135 (Mism.= 0) 91 AGAAAGAGA 83 (Mism.= 0) TFBS AC: RSP00961//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: PB1 /BF: BPBF Motifs on "+" Strand: Mean Exp. Number 0.00238 Up.Conf.Int. 1 Found 1 225 TGCAAAAG 232 (Mism.= 0) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00621 Up.Conf.Int. 1 Found 1 70 CaAACAAACTtC 59 (Mism.= 2) TFBS AC: RSP01641//OS: tobacco (Nicotiana tabacum) /GENE: P-450/TFBS: ARE /BF: Unknown nuclear factor(s) Motifs on "+" Strand: Mean Exp. Number 0.00981 Up.Conf.Int. 1 Found 1 78 TtTTGTCTCT 87 (Mism.= 1) TFBS AC: RSP02106//OS: Sesbania rostrata /GENE: Srglb3/TFBS: NICE element 2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00358 Up.Conf.Int. 1 Found 1 80 TTGTCTCTT 88 (Mism.= 0) TFBS AC: RSP02203//OS: eggplant (Solanum melongena) /GENE: SmPT4/TFBS: MYCS (SmPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 87 TTTCTTGTTCC 97 (Mism.= 1) TFBS AC: RSP02204//OS: eggplant (Solanum melongena) /GENE: SmPT5/TFBS: MYCS (SmPT5) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00299 Up.Conf.Int. 1 Found 1 87 TTTCTTGTTCC 97 (Mism.= 0) TFBS AC: RSP02206//OS: tobacco (Nicotiana tabacum) /GENE: NtPT4/TFBS: MYCS (NtPT4) /BF: MYC Motifs on "+" Strand: Mean Exp. Number 0.00548 Up.Conf.Int. 1 Found 1 87 TTTCTTGTTCC 97 (Mism.= 1) TFBS AC: RSP02279//OS: rice (Oryza sativa) /GENE: OsLKR/SDH/TFBS: Pb2 /BF: RPBF Motifs on "+" Strand: Mean Exp. Number 0.00687 Up.Conf.Int. 1 Found 1 237 TGGAAAG 243 (Mism.= 0) Totally 12 motifs of 11 different TFBSs have been found ____________________________________________________________ >PLPR0572..AC:X15855..OS:Lycopersicon esculentum..GENE:LAT52 gene..ACPROD:anther specific LAT52 protein..[ -200: +51] ..CDS: +111..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.48 G - 0.08 T - 0.30 C - 0.14 TFBS AC: RSP00038//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: LAT52; LAT56;/TFBS: 52/56 box /BF: GT-1 related transcription factors Motifs on "+" Strand: Mean Exp. Number 0.00050 Up.Conf.Int. 1 Found 1 105 TGTGGTTATATA 116 (Mism.= 0) TFBS AC: RSP00745//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 5 /BF: GT-1 Motifs on "+" Strand: Mean Exp. Number 0.00996 Up.Conf.Int. 1 Found 1 177 aAAAGGcTATTT 188 (Mism.= 2) TFBS AC: RSP01311//OS: soybean (Glycine max) /GENE: 11S A2B1a/TFBS: Regulatory Motif 1 /BF: unknown seed embryo nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00158 Up.Conf.Int. 1 Found 1 139 cTATtATTTCTCTAaC 124 (Mism.= 3) TFBS AC: RSP01445//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-2 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00424 Up.Conf.Int. 1 Found 1 61 GTCaATtGCTACaAT 75 (Mism.= 3) TFBS AC: RSP02143//OS: sugar beet (Beta vulgaris) /GENE: BvNHX1/TFBS: MYB 1AT BS /BF: MYB 1AT Motifs on "-" Strand: Mean Exp. Number 0.00593 Up.Conf.Int. 1 Found 1 113 ATAACCA 107 (Mism.= 0) TFBS AC: RSP02205//OS: tobacco (Nicotiana tabacum) /GENE: NtPT3/TFBS: MYCS (NtPT3) /BF: MYC Motifs on "-" Strand: Mean Exp. Number 0.00352 Up.Conf.Int. 1 Found 1 209 TGTCTTGTTTT 199 (Mism.= 1) TFBS AC: RSP02421//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 39-42 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00867 Up.Conf.Int. 1 Found 1 145 GtGGAGC 139 (Mism.= 1) TFBS AC: RSP02493//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: AC-I (6) /BF: AtMYB61 Motifs on "-" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 110 ACCACA 105 (Mism.= 0) TFBS AC: RSP02965//OS: potato (Solanum tuberosum) /GENE: StSP5G/TFBS: StCOL1 BS /BF: StCOL1 Motifs on "+" Strand: Mean Exp. Number 0.00332 Up.Conf.Int. 1 Found 1 105 TGTGGT 110 (Mism.= 0) Totally 9 motifs of 9 different TFBSs have been found ____________________________________________________________ >PLPR0573..AC:X02408..OS:Phaseolus vulgaris..GENE:dlec1..PROD:phytohemagglutinin PHA-E..[ -200: +51] ..CDS: +16..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.32 G - 0.15 T - 0.37 C - 0.16 TFBS AC: RSP00537//OS: tomato (Lycopersicon esculentum), Lycopersicon esculentum /GENE: rbcS3C/TFBS: TSS CC /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00967 Up.Conf.Int. 1 Found 1 17 AACTAATTATTTCAT 31 (Mism.= 2) TFBS AC: RSP00689//OS: barley (Hordeum vulgare) /GENE: C-hordein/TFBS: n+e element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00079 Up.Conf.Int. 1 Found 1 132 AaGAaTcCATAAAGTAG 148 (Mism.= 3) TFBS AC: RSP00710//OS: pea (Pisum sativum) /GENE: TOP2/TFBS: AT1-box /BF: unknown transcription factor Motifs on "+" Strand: Mean Exp. Number 0.00397 Up.Conf.Int. 1 Found 1 20 TAATTATTTCaTA 32 (Mism.= 1) TFBS AC: RSP00864//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-5 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 3 147 AGAGAGAGA 155 (Mism.= 0) 149 AGAGAGAGA 157 (Mism.= 0) 185 AGAGAGtGA 193 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "+" Strand: Mean Exp. Number 0.00398 Up.Conf.Int. 1 Found 2 147 AGAGAGAGA 155 (Mism.= 1) 149 AGAGAGAGA 157 (Mism.= 1) TFBS AC: RSP00916//OS: maize (Zea mays) /GENE: b-32/TFBS: B4 /BF: Opaque-2 Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 49 GATGACGTGT 58 (Mism.= 1) TFBS AC: RSP00997//OS: maize (Zea mays) /GENE: cyPPDK1/TFBS: O2 BS-2 /BF: Opaque-2 (O2) Motifs on "+" Strand: Mean Exp. Number 0.00223 Up.Conf.Int. 1 Found 1 49 GATGACGTGT 58 (Mism.= 0) TFBS AC: RSP01123//OS: tomato (Lycopersicon esculentum) /GENE: Synthetic oligonucleotides/TFBS: RBSS6.1 /BF: ABZ1 Motifs on "+" Strand: Mean Exp. Number 0.00007 Up.Conf.Int. 1 Found 1 48 tGATGACGTGTAtG 61 (Mism.= 2) TFBS AC: RSP01185//OS: Petunia hybrida /GENE: chsA/TFBS: box 2 /BF: Unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00662 Up.Conf.Int. 1 Found 1 226 CCAACTtACTCt 237 (Mism.= 2) TFBS AC: RSP01258//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: GBF1 BS5 /BF: GBF1 Motifs on "+" Strand: Mean Exp. Number 0.00219 Up.Conf.Int. 1 Found 1 51 TGACGTGT 58 (Mism.= 0) TFBS AC: RSP01275//OS: parsley (Petroselinum crispum) /GENE: PcACO-IV/TFBS: ACE 2 /BF: 2 unknown noncooperative nuclear factors Motifs on "-" Strand: Mean Exp. Number 0.00214 Up.Conf.Int. 1 Found 1 59 TaCACGTCAT 50 (Mism.= 1) TFBS AC: RSP01283//OS: OS: soybean (Glycine max) /GENE: gsa1/TFBS: GAGA element /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 146 tAGAGAGAGAGAGtGcA 162 (Mism.= 3) TFBS AC: RSP01312//OS: soybean (Glycine max) /GENE: 11S A2B1a/TFBS: Regulatory Motif 2 /BF: unknown seed embryo nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00246 Up.Conf.Int. 1 Found 1 20 TAATTATTTCaTAtT 34 (Mism.= 2) TFBS AC: RSP01616//OS: soybean (Glycine max) /GENE: Synthetic oligonucleotides/TFBS: CRA1-I /BF: GmDof11 Motifs on "-" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 139 gGATtCTTTTtTCTT 125 (Mism.= 3) TFBS AC: RSP01654//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: STF1/HY5 BS (cons) /BF: STF1/HY5 BS (cons) Motifs on "+" Strand: Mean Exp. Number 0.00494 Up.Conf.Int. 1 Found 1 49 GATGACGTGT 58 (Mism.= 0) TFBS AC: RSP01658//OS: Arabidopsis (Arabidopsis thaliana) /GENE: SAUR-AC1-like (At4g38810)/TFBS: C/G-box /BF: HY5 Motifs on "+" Strand: Mean Exp. Number 0.00118 Up.Conf.Int. 1 Found 1 49 GATGACGTGTat 60 (Mism.= 2) TFBS AC: RSP02375//OS: Catharanthus roseus /GENE: CrWRKY1/TFBS: CT-rich /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00023 Up.Conf.Int. 1 Found 3 162 tgCaCTCTCTCTCTCT 147 (Mism.= 3) 160 CaCTCTCTCTCTCTac 145 (Mism.= 3) 158 CTCTCTCTCTCTactT 143 (Mism.= 3) TFBS AC: RSP02897//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: NAC/bZIP TFs BS /BF: NAC TF; bZIP TFs Motifs on "-" Strand: Mean Exp. Number 0.00861 Up.Conf.Int. 1 Found 2 158 CTCTCTCtC 150 (Mism.= 1) 156 CTCTCTCtC 148 (Mism.= 1) Totally 24 motifs of 18 different TFBSs have been found ____________________________________________________________ >PLPR0574..AC:X59139..OS:Lycopersicon esculentum ..GENE:ACC2..PROD:1-aminocyclopropane-1-carboxylic acid synthase 2..[ -200: +51] ..CDS: +153..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.33 G - 0.08 T - 0.41 C - 0.18 TFBS AC: RSP00203//OS: arabidopsis (Arabidopsis thaliana) /GENE: AtEm6/TFBS: ABRE/6.1 /BF: ABI5 Motifs on "+" Strand: Mean Exp. Number 0.00300 Up.Conf.Int. 1 Found 1 102 TATACGTtAG 111 (Mism.= 1) TFBS AC: RSP00285//OS: parsley (Petroselinum crispum) /GENE: PAL-1/TFBS: Box P /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00234 Up.Conf.Int. 1 Found 1 195 CTaCAACAAACaC 207 (Mism.= 2) TFBS AC: RSP00747//OS: tobacco (Nicotiana plumbaginifolia) /GENE: Cab-E/TFBS: box 7 /BF: GT-1 Motifs on "-" Strand: Mean Exp. Number 0.00177 Up.Conf.Int. 1 Found 1 92 CATCAGaAAATA 81 (Mism.= 1) TFBS AC: RSP02899//OS: Arabidopsis (Arabidopsis thaliana) /GENE: Synthetic oligonucleotides/TFBS: C3HC4/MYB/WRKY BS /BF: C3HC4, MYB, WRKY Motifs on "+" Strand: Mean Exp. Number 0.00339 Up.Conf.Int. 1 Found 1 140 CTTTCCCC 147 (Mism.= 0) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0575..AC:S80135..OS:Arabidopsis thaliana..GENE:HMG1..PROD:enzyme 3-hidroxy-3-methylglutaryl-CoA reductase..[ -200: +51] ..CDS: +42 |Taxon: Dicot |Promoter: TATA-less Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.48 G - 0.12 T - 0.25 C - 0.14 TFBS AC: RSP00850//OS: maize (Zea mays) /GENE: H4C7/TFBS: CAT /BF: Unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00432 Up.Conf.Int. 1 Found 1 17 GCCAAC 12 (Mism.= 0) TFBS AC: RSP02238//OS: sunflower (Helianthus annuus) /GENE: HAHB4/TFBS: ABRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00012 Up.Conf.Int. 1 Found 1 143 AACaAcAACGTGaAAACcTA 162 (Mism.= 4) TFBS AC: RSP02619//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE2 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00711 Up.Conf.Int. 1 Found 1 149 AACGTGAA 156 (Mism.= 0) TFBS AC: RSP02715//OS: persimmon (Diospyros kaki Thunb.) /GENE: DkANR/TFBS: AC (DkANR) /BF: DkMyb2 Motifs on "-" Strand: Mean Exp. Number 0.00653 Up.Conf.Int. 1 Found 1 18 AGCCAACCtg 9 (Mism.= 2) Totally 4 motifs of 4 different TFBSs have been found ____________________________________________________________ >PLPR0576..AC:S80135..OS:Arabidopsis thaliana..GENE:HMG1..PROD:enzyme 3-hidroxy-3-methylglutaryl-CoA reductase..[ -200: +51] ..CDS: +71..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA Length of Query Sequence: 251 bp | Nucleotide Frequencies: A - 0.40 G - 0.11 T - 0.23 C - 0.26 TFBS AC: RSP00092//OS: barley (Hordeum vulgare) /GENE: Amy pHV19/TFBS: TAACAAA box /BF: GAmyb Motifs on "-" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 183 TAACAAA 177 (Mism.= 0) TFBS AC: RSP00393//OS: rice (Oryza sativa) (Oryza sativa) /GENE: RAmy1A/TFBS: GARE /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 183 TAACAAA 177 (Mism.= 0) TFBS AC: RSP00441//OS: maize /GENE: cyPPDK1/TFBS: box a /BF: DOF1 Motifs on "-" Strand: Mean Exp. Number 0.00410 Up.Conf.Int. 1 Found 1 182 AACAAAGTtT 173 (Mism.= 1) TFBS AC: RSP00653//OS: spinach (Spinacia oleracea) /GENE: petH/TFBS: CT-LB /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00161 Up.Conf.Int. 1 Found 1 224 TcCTCTCTCCT 234 (Mism.= 1) TFBS AC: RSP00865//OS: arabidopsis (Arabidopsis thaliana) /GENE: STK/TFBS: GA-6 /BF: BPC1 Motifs on "-" Strand: Mean Exp. Number 0.00087 Up.Conf.Int. 1 Found 1 242 GGAGAGAGA 234 (Mism.= 0) TFBS AC: RSP00963//OS: barley (Hordeum vulgare) /GENE: ITR1/TFBS: GLM2 /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00555 Up.Conf.Int. 1 Found 1 50 TGAGTTA 56 (Mism.= 0) TFBS AC: RSP01051//OS: barley (Hordeum vulgare) /GENE: Amy6.4/TFBS: GARE /BF: GAMYB Motifs on "-" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 183 TAACAAA 177 (Mism.= 0) TFBS AC: RSP01444//OS: rice (Oryza sativa) /GENE: RPBF (OsDof3)/TFBS: RPS-1 /BF: unknown transcriptin factor Motifs on "+" Strand: Mean Exp. Number 0.00162 Up.Conf.Int. 1 Found 1 228 CTCTCCTCTCtcTCc 242 (Mism.= 3) TFBS AC: RSP01708//OS: tomato (Solanum lycopersicum) /GENE: Synthetic oligonucleotides/TFBS: RIN BSC [“MEF2”] /BF: RIN Motifs on "+" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 39 CTAAAATTAG 48 (Mism.= 0) Motifs on "-" Strand: Mean Exp. Number 0.00911 Up.Conf.Int. 1 Found 1 48 CTAATTTTAG 39 (Mism.= 0) TFBS AC: RSP02238//OS: sunflower (Helianthus annuus) /GENE: HAHB4/TFBS: ABRE /BF: unknown nuclear factor Motifs on "+" Strand: Mean Exp. Number 0.00008 Up.Conf.Int. 1 Found 1 22 AACaAcAACGTGaAAACcTA 41 (Mism.= 4) TFBS AC: RSP02423//OS: rice (Oryza sativa. japonica) /GENE: BDP 4-431/TFBS: CRE 78-81/83-87 /BF: unknown nuclear factor Motifs on "-" Strand: Mean Exp. Number 0.00099 Up.Conf.Int. 1 Found 1 242 GGAGAGAGAG 233 (Mism.= 0) TFBS AC: RSP02619//OS: Arabidopsis (Arabidopsis thaliana) /GENE: MIR168a/TFBS: ABRE2 /BF: ABF1; ABF2; ABF3; ABF4 Motifs on "+" Strand: Mean Exp. Number 0.00432 Up.Conf.Int. 1 Found 1 28 AACGTGAA 35 (Mism.= 0) TFBS AC: RSP02664//OS: Arabidopsis (Arabidopsis thaliana) /GENE: ERD1/TFBS: NACRS /BF: ANAC019; ANAC055; ANAC072 Motifs on "-" Strand: Mean Exp. Number 0.00383 Up.Conf.Int. 1 Found 1 160 ACtCGCATGTc 150 (Mism.= 2) TFBS AC: RSP02983//OS: birch (Betula platyphylla) /GENE: BpMYB106/TFBS: BpMYB106 BS 2 (BpMYB106) /BF: BpMYB106 Motifs on "-" Strand: Mean Exp. Number 0.00692 Up.Conf.Int. 1 Found 1 183 TAACAAA 177 (Mism.= 0) Totally 15 motifs of 14 different TFBSs have been found ____________________________________________________________