> PLPR0003 ..AC:AB013815 ..OS:Arabidopsis thaliana ..GENE:DREB1A ..PROD:DREB1A ..[ -200: +51] ..CDS:+140 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.14 T - 0.30 C - 0.23
1 gaataagtca aaaaaagtct tctctggaca catggcagat cttaatgagt
51 gaatccttaa actactcatt ttacaattgc ttcgctgtgt atagtttacg
101 tggcattacc agagacacaa actccgtctt cgccttttct tttgcctcta
151 aaatatcttc cgccatTATA AAACagcatg ctctcactcc aacttttatt
201 TATCTACAAA CATTAAATCC ACCTGAACTA GAACAGAAAG AGAGAGAAAC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00043 Mean Expected Number 0.001 +strand -104 : -97 TACGTGGC
AC RSP00051 Mean Expected Number 0.002 -strand -97 : -106 GCCACGTAaA
AC RSP00247 Mean Expected Number 0.003 -strand -97 : -106 GCCACGTAAa
AC RSP00653 Mean Expected Number 0.001 -strand +48 : +38 TTCTCTCTCtT
AC RSP00857 Mean Expected Number 0.010 +strand +19 : +28 CCAcCTGAAC
AC RSP00861 Mean Expected Number 0.001 +strand +35 : +43 AGAAAGAGA
AC RSP00864 Mean Expected Number 0.000 +strand +39 : +47 AGAGAGAGA
AC RSP00943 Mean Expected Number 0.008 +strand -135 : -125 TCATTTtACAA
AC RSP01034 Mean Expected Number 0.003 +strand -103 : -97 ACGTGGC
AC RSP01575 Mean Expected Number 0.000 +strand -175 : -162 GGACACATGgCAGA
AC RSP01596 Mean Expected Number 0.008 -strand -125 : -135 TTGTaAAATGA
Totally 11 motifs of 11 different REs have been found
Description of REs found
42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown
240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC: RSP00738
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
793. Group RE: NON /AC: RSP00857//OS: Zea mays /GENE: H4C7/RE: NON /TF: unknown
797. Group TF: BPC1 /AC: RSP00861//OS: Arabidopsis thaliana /GENE: STK/RE: GA-2 /TF: BPC1
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
872. Group TF: GBF /AC: RSP00943//OS: Lycopersicon esculentum /GENE: RbcS-3.6/RE: box III /TF: GBF
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
1404. Group RE: ICEr1 /AC: RSP01575//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr1 /TF: unknown
1417. Group RE: Box III /AC: RSP01596//OS: Pisum sativum /GENE: rbcS-3.6/RE: Box III /TF: unknown
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