> PLPR0004 ..AC:AB013817, AB007789 ..OS:Arabidopsis thaliana ..GENE:DREB1C ..PROD:DREB1C ..[ -200: +51] ..CDS:+153 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.35 G - 0.16 T - 0.24 C - 0.24
1 cagaaacttc ccaagatggg tcaaaggaca catgtcagat tctcagtgat
51 tgacagcctt gataattaca aaaccgtggg atcgcttagc tgtttcttat
101 ccacgtggca ttcacagaga cagaaactcc gcgttcgacc ccacaaatat
151 ccaaatatct tccggccaaT ATAAACAgca agctctcact ccaacatttc
201 TATAACTTCA AACACTTACC TGAATTAGAA AAGAAAGATA GATAGAGAAA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00073 Mean Expected Number 0.002 +strand -101 : -92 tCCACGTGGC
AC RSP00073 Mean Expected Number 0.002 -strand -92 : -101 GCCACGTGGa
AC RSP00153 Mean Expected Number 0.003 +strand -100 : -91 CCACGTGGCa
AC RSP00175 Mean Expected Number 0.001 +strand -99 : -92 CACGTGGC
AC RSP00189 Mean Expected Number 0.003 +strand -101 : -92 TCCACGTgGC
AC RSP00340 Mean Expected Number 0.004 +strand -101 : -92 TCCACGTGgC
AC RSP00682 Mean Expected Number 0.002 -strand -92 : -101 GCCACGTGGA
AC RSP00683 Mean Expected Number 0.004 -strand -92 : -101 GCCAcGTGGA
AC RSP00718 Mean Expected Number 0.001 +strand -100 : -93 CCACGTGG
AC RSP00718 Mean Expected Number 0.001 -strand -93 : -100 CCACGTGG
AC RSP00749 Mean Expected Number 0.004 -strand -127 : -138 gTTTTGTAATTA
AC RSP00784 Mean Expected Number 0.000 +strand -101 : -92 TCCACGTGGC
AC RSP00938 Mean Expected Number 0.000 -strand -91 : -102 TGCCACGTGGAt
AC RSP01030 Mean Expected Number 0.009 +strand -199 : -192 AGAAACTT
AC RSP01034 Mean Expected Number 0.005 +strand -98 : -92 ACGTGGC
AC RSP01575 Mean Expected Number 0.000 +strand -175 : -162 GGACACATGTCAGA
AC RSP01593 Mean Expected Number 0.000 +strand -101 : -90 TcCACGTGGCAT
AC RSP01726 Mean Expected Number 0.000 -strand -91 : -102 TGCCACGTGGaT
AC RSP01735 Mean Expected Number 0.001 +strand -164 : -156 AGATTCTCA
Totally 19 motifs of 17 different REs have been found
Description of REs found
72. Group TF: TAF-1 /AC: RSP00073//OS: Nicotiana tabacum /GENE: Synthetic OLIGO/RE: PA /TF: TAF-1 ||Identical REs AC: RSP00274
149. Group RE: Box II /AC: RSP00153//OS: Petroselinum crispum /GENE: CHS/RE: Box II /TF: CPRF-1; CPRF-2; CPRF-3; ||Identical REs AC: RSP00154
169. Group RE: ABRE /Group TF: ABF /AC: RSP00175//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: ABRE /TF: ABF ||Identical REs AC: RSP00723 RSP01570
183. Group TF: ABI5 /AC: RSP00189//OS: Arabidopsis thaliana /GENE: AtEm1/RE: ABRE/1.3 /TF: ABI5
325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965
651. Group TF: GBF3 /AC: RSP00682//OS: Arabidopsis thaliana /GENE: Adh/RE: -214 G-box (core) /TF: GBF3
652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
683. Group TF: GBF /AC: RSP00718//OS: Arabidopsis thaliana /GENE: Adh/RE: G-box-1 /TF: GBF ||Identical REs AC: RSP01254
711. Group TF: GT-1 /AC: RSP00749//OS: Catharanthus roseus /GENE: STR/RE: BN /TF: GT-1
739. Group TF: G-box binding TF /AC: RSP00784//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 8 /TF: G-box binding TF
867. Group TF: GBF /AC: RSP00938//OS: Arabidopsis thaliana /GENE: RbcS-1A/RE: G box-2 /TF: GBF
955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
1404. Group RE: ICEr1 /AC: RSP01575//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr1 /TF: unknown
1415. Group TF: GBF /AC: RSP01593//OS: Pisum sativum /GENE: rbcS-3.6/RE: G box /TF: GBF
1534. Group TF: STF1/HY5 /AC: RSP01726//OS: Arabidopsis thaliana /GENE: SAUR-AC1-like (At3g60690)/RE: G-box (1) /TF: STF1/HY5
1543. Group TF: CAMTA3 /AC: RSP01735//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM6 /TF: CAMTA3
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