> PLPR0007 ..AC:L00670 ..OS:Arabidopsis thaliana ..GENE:TMK1 ..PROD:protein kinase ..[ -200:  +51] ..CDS:+177 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.37   G -  0.10   T -  0.33   C -  0.20

      1  ttttctattt caccatttcg tttgtgtgaa gcatttgaca aaatccaact
     51  cacactacgt agtcaatata tccactacaa cctttaatta ttttccaaat
    101  aaacgttatc TCAATcctat gataaaaatt aaataaatta aaaaactcca
    151  aaataaaaTA AAAATAaaaa taaatatatc taatctgtta ccaaactgtc
    201  ATTGGCTTAG TGGGACAGAC ATCCCATGTG CAGTCTCCTT GGCTTCTGCT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00130   Mean Expected Number 0.000   +strand    -44 :  -25   AATAAaAATAAaAATAAATA
AC RSP00140   Mean Expected Number 0.004   -strand    -26 :  -38   AtTTATTTTTATT
AC RSP00357   Mean Expected Number 0.006   +strand   -155 : -148   CAACTCAC
AC RSP00488   Mean Expected Number 0.002   +strand   -146 : -137   CTACGTAGtC
AC RSP00756   Mean Expected Number 0.006   +strand   -152 : -145   CTCACACT
AC RSP01128   Mean Expected Number 0.006   +strand    +31 :  +49   CAGT-- ** bp --TGCT
AC RSP01602   Mean Expected Number 0.010   +strand    -92 :  -85   TCTCAATC
AC RSP01686   Mean Expected Number 0.009   -strand   -173 : -178   CACACA

  Totally       8 motifs of     8 different REs have been found


Description of REs found

  128. Group RE: C2 /AC: RSP00130//OS: Glycine max /GENE: GmAux28/RE: C2 /TF: unknown
  136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1
  342. Group RE: CARE1 /AC: RSP00357//OS: Oryza sativa /GENE: Rep-1/RE: CARE1 /TF: unknown
  464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown
  718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown
 1047. Group TF: ZPT2-2 /AC: RSP01128//OS: Petunia hybrida /GENE: Synthetic OLIGO/RE: ZPT2-2 BS 2 /TF: ZPT2-2
 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
 1504. Group RE: CARE D /AC: RSP01686//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE D /TF: unknown