> PLPR0012 ..AC:AF002277 ..OS:Lupinus luteus ..GENE:Ypr10.1a ..PROD:LlPR10.1A ..[ -200: +51] ..CDS:+86 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.35 C - 0.16
1 attgggtaga ataaatatat ttaaattaaa atttaattat taagtatttt
51 tatgacgaat cataaattca tgacacatgg agttaaccaa actatgcgac
101 aatagatatg ctcctcacta gctaaataaa ATTGCattaa tttatgagta
151 aaggtggtaa ccagtttcTA TAAATAgagc attctctctt tgccataatt
201 CACATCTCAA ACAAGCTTAT ATTTATACTC TATAACACTC CCACTATCTT
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00122 Mean Expected Number 0.004 +strand +38 : +44 CTCCCAC
AC RSP00340 Mean Expected Number 0.001 -strand -120 : -129 TCCAtGTGTC
AC RSP00790 Mean Expected Number 0.002 -strand -130 : -140 aTGAATTTATG
AC RSP00999 Mean Expected Number 0.009 +strand -86 : -76 TCACTAgCTAA
Totally 4 motifs of 4 different REs have been found
Description of REs found
120. Group RE: Box C /AC: RSP00122//OS: Pisum sativum /GENE: AS1/RE: Box C /TF: unknown
325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965
743. Group RE: A segment /AC: RSP00790//OS: Flaveria trinervia /GENE: ppcA1/RE: A segment /TF: unknown
920. Group TF: 3AF3 /AC: RSP00999//OS: Nicotiana tabacum /GENE: rbcS-3A/RE: 3'-III element /TF: 3AF3
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