> PLPR0013 ..AC:AF008597 ..OS:Catharanthus roseus ..GENE:CRSD4H ..PROD:desacetoxyvindoline-4-hydroxylase ..[ -200: +51] ..CDS:+115 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.44 G - 0.11 T - 0.37 C - 0.08
1 agaaggcatg gagagaaatt tgaatttttt tacgactata atttgatttt
51 acgttattct gaatattatg ctcctaaaag tatagttatt attgtctata
101 aaggattCCA ATcatatatg acattttggg taaccatcta tactaacata
151 ttaatataat atctttttat TATAAAAAtt taataaaaaa taaatattaa
201 GGAAAAAATA AATTATAAAA AAAATATATT ATAGAAGGAA AATTTTAAAC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00231 Mean Expected Number 0.004 +strand -93 : -87 CCAATCA
AC RSP00574 Mean Expected Number 0.006 -strand -140 : -147 CAGAATAA
AC RSP01475 Mean Expected Number 0.001 -strand -72 : -80 CCAAAATGT
Totally 3 motifs of 3 different REs have been found
Description of REs found
224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown
550. Group RE: AT-rich K /AC: RSP00574//OS: Lycopersicon esculentum /GENE: rbcS1/RE: AT-rich K /TF: unknown
1343. Group RE: GCAA-like motif /AC: RSP01475//OS: Oryza sativa /GENE: GluA-3/RE: GCAA-like motif /TF: unknown
Download This Page
Download Promoter Sequence in FASTA Format