> PLPR0014 ..AC:AF031649 ..OS:Arabidopsis thaliana ..GENE:NAT2 ..PROD:neutral amino acid transport system II ..[ -200: +51] ..CDS:+94 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.08 T - 0.38 C - 0.16
1 caagccgaaa ctatattaaa taaacatttt tttttcttta actaaaacat
51 ttataacatt taacaataaa agttaaaaat cgaacacgta taacgtattt
101 ttttacgtat acgtcttgtt ggcatatatg cttaaaaact tcattacata
151 catatacaag tatgtcTATA TATAtgatat tatgcaaaca caaatctgtt
201 GACTATAATT AGACTTCTTC ATTTACTCTC TCTCTGACTT AAAACATTTA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00850 Mean Expected Number 0.003 -strand -78 : -83 GCCAAC
AC RSP00864 Mean Expected Number 0.001 -strand +35 : +27 AGAGAGAGA
AC RSP00949 Mean Expected Number 0.002 -strand +5 : -3 TAGTCAAC
AC RSP01288 Mean Expected Number 0.004 -strand -110 : -117 ATACGTGT
AC RSP01550 Mean Expected Number 0.000 +strand -97 : -86 TACGTaTACGTC
AC RSP01702 Mean Expected Number 0.008 +strand -118 : -109 AACACGTATa
Totally 6 motifs of 6 different REs have been found
Description of REs found
790. Group RE: CAT /AC: RSP00850//OS: Zea mays /GENE: H4C7/RE: CAT /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
878. Group RE: TAGTCAAC motif /AC: RSP00949//OS: Petroselinum crispum /GENE: 4CL-1/RE: TAGTCAAC motif /TF: unknown
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
1389. Group RE: ABRE3a/3b /AC: RSP01550//OS: Sorghum bicolor; Sorghum vulgare /GENE: Sbdhn2/RE: ABRE3a/3b /TF: unknown
1511. Group RE: ACGT1 /AC: RSP01702//OS: Arabidopsis thaliana /GENE: XERO2/RE: ACGT1 /TF: unknown
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