> PLPR0016 ..AC:AF150686 ..OS:Solanum tuberosum ..GENE:St4CL ..PROD:4-coumarate:coenzyme A ligase ..[ -200:  +51] ..CDS:+79 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.33   G -  0.09   T -  0.32   C -  0.27

      1  acccaaccat aagaactact ctcaccaacc acaagagact ctattttttt
     51  atatccccaa aaaaggaaaa aaattgaaac aagtttccat gaagttgccc
    101  ctgaacaacc ctaaataccc ataaactccc tttcacctac cacagacttg
    151  tgtttttttt tctcaTATAT ATAttcatca atctttgcac attcatcttc
    201  AGGACACCAT AGCTAAAAAT CTACTTTTCC TTTTAGCTTT TCAGTGTGCT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00286   Mean Expected Number 0.008   +strand   -181 : -171   TCTCACCaACC
AC RSP00286   Mean Expected Number 0.008   +strand    -70 :  -60   TtTCACCTACC
AC RSP00331   Mean Expected Number 0.004   +strand   -118 : -110   GTTTCCATG
AC RSP00888   Mean Expected Number 0.008   +strand    +15 :  +23   AAAAATCTA
AC RSP00950   Mean Expected Number 0.007   +strand   -180 : -170   CTCACCAACCa
AC RSP01033   Mean Expected Number 0.003   -strand   -135 : -144   CCTTTTTTGG
AC RSP01044   Mean Expected Number 0.001   +strand   -181 : -170   TCTCACCAACCa
AC RSP01083   Mean Expected Number 0.002   +strand   -181 : -170   TCTCACCAACCa
AC RSP01184   Mean Expected Number 0.005   +strand   -181 : -170   TCTCACCaACCA
AC RSP01184   Mean Expected Number 0.005   +strand    -70 :  -59   TtTCACCTACCA
AC RSP01209   Mean Expected Number 0.008   -strand   -136 : -145   CTTTTTTGGG
AC RSP01214   Mean Expected Number 0.002   -strand   -135 : -144   CCTTTTTTGG
AC RSP01294   Mean Expected Number 0.000   +strand   -117 : -106   TTTCCATGaAGT
AC RSP01390   Mean Expected Number 0.000   +strand   -106 :  -58   TTGCCCCTGAACAACCCTAAATACCCATAAACTCCCTTTCACCTACCAC
AC RSP01709   Mean Expected Number 0.010   +strand   -144 : -135   CCAAAAAAGG
AC RSP01709   Mean Expected Number 0.010   -strand   -135 : -144   CCTTTTTTGG

  Totally      16 motifs of    13 different REs have been found


Description of REs found

  277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC:  RSP01754
  317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
  820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1
  879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown
  958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC:  RSP01204
  968. Group RE: box L /AC: RSP01044//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box L /TF: unknown
 1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1
 1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown
 1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs
 1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC:  RSP01299  RSP01300
 1274. Group RE: 4cl-CMA1 /AC: RSP01390//OS: Solanum tuberosum /GENE: 4CL-1/RE: 4cl-CMA1 /TF: unknown
 1517. Group TF: RIN /AC: RSP01709//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [SRF] /TF: RIN