> PLPR0021 ..AC:AF325187 ..OS:Phaseolus coccineus ..GENE:G564 ..PROD:suspensor-specific protein ..[ -200: +51] ..CDS:+57 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.18 T - 0.35 C - 0.12
1 ggaaaaatac aagcaatctc cctccagtac tttgcataac attttgtatt
51 agtgatgagt tttttatcat atatatttag aatataggaa aattttagaa
101 tcacgtggat agctatataa tagtaatatt ttaatttata atgtagttga
151 ttttatttgt caactggTAT ACATAaatat gtgttgatag tgggtgactt
201 GTGGCTTAAA GAAATGTCCA GAGGCTGACA ACAACTCTGC ACAGACTAGC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00640 Mean Expected Number 0.001 +strand -100 : -93 TCACGTGG
AC RSP01135 Mean Expected Number 0.001 -strand -127 : -139 ATATATGATAAAA
AC RSP01275 Mean Expected Number 0.003 -strand -92 : -101 TCCACGTgAT
AC RSP01699 Mean Expected Number 0.010 -strand -95 : -101 ACGTGAT
AC RSP01734 Mean Expected Number 0.008 -strand -92 : -98 TCCACGT
Totally 5 motifs of 5 different REs have been found
Description of REs found
616. Group RE: G-box /Group TF: GBF /AC: RSP00640//OS: Zea mays /GENE: GRF1/RE: G-box /TF: GBF ||Identical REs AC: RSP00641
1053. Group RE: I-box-like sequence /AC: RSP01135//OS: Cucumis melo /GENE: Cucumisin/RE: I-box-like sequence /TF: unknown
1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown
1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown
1542. Group TF: CAMTA3 /AC: RSP01734//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM4 /TF: CAMTA3
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