> PLPR0022 ..AC:AF326577 ..OS:Zea mays ..GENE:anthocyanin regulatory B protein ..PROD:anthocyanin regulatory B protein ..[ -200:  +51] ..CDS:+389 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.21   G -  0.26   T -  0.29   C -  0.24

      1  agaagagcga cgtcaggttc tagactattc ttgtggcctc gggcggatgg
     51  cgggtaccca tgtcttcgtt aggcttatct gaccgtggag atgaaatcta
    101  agcgctcata gaaattaaac taacgtggac actctgtcct tgctgttttg
    151  ctccctgctc ttTATATATA gaatagaatg cctgcttgca ttgcacccgt
    201  ACGTACAGCG TAGCGCGGAG TGGAGGTGAG CTCCTCCTCC GATTCTTGCC
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00115   Mean Expected Number 0.001   +strand    -93 :  -83   ATAGAAATtAA
AC RSP00248   Mean Expected Number 0.006   +strand   -194 : -185   GCgACGTCAG
AC RSP00808   Mean Expected Number 0.008   -strand    -77 :  -83   GTTAGTT
AC RSP01237   Mean Expected Number 0.003   +strand    -41 :  -32   CTtTATATAT
AC RSP01237   Mean Expected Number 0.002   -strand    -28 :  -37   tTCTATATAT

  Totally       5 motifs of     4 different REs have been found


Description of REs found

  113. Group TF: ATBP-1 /AC: RSP00115//OS: Pisum sativum /GENE: GS2/RE: BOX 1 /TF: ATBP-1
  241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB
  761. Group TF: Pti4 /AC: RSP00808//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: Myb1 /TF: Pti4 ||Identical REs AC:  RSP00810  RSP00812  RSP00813
 1142. Group RE: -23 Z-BAC+ /AC: RSP01237//OS: Phaseolus vulgaris /GENE: BAC/RE: -23 Z-BAC+ /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format