> PLPR0023 ..AC:AF334959 ..OS:Zea mays ..GENE:Brittle-2 (Bt2) ..PROD:ADP-glucose pyrophosphorylase small subunit ..[ -200: +51] ..CDS:+25 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.31 C - 0.21
1 caagaacaaa tgtttacagc ttgttacacc tcccatcaag caaagaaatg
51 gaatctttta ttttatgtac acgtgtacgg gtagctattg tttataaatt
101 gcagaagaca cctcaacatg atggataATT GTatacgcaa aactactttc
151 ctcgaattcc ccattcTATA AATTccagtt aaacttaatt cgtaagatca
201 ATCATAATTC TCGAGTTGCA AACCATGGAC ATGGCTTTGG CGTCTAAAGC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00447 Mean Expected Number 0.007 +strand -162 : -153 AGCAAAGaAA
AC RSP00509 Mean Expected Number 0.002 +strand -34 : -23 TATAAATtCCAG
AC RSP00524 Mean Expected Number 0.009 +strand -132 : -126 ACACGTG
AC RSP00524 Mean Expected Number 0.008 -strand -125 : -131 ACACGTG
AC RSP00707 Mean Expected Number 0.000 +strand -133 : -124 TACACGTGTA
AC RSP00707 Mean Expected Number 0.000 -strand -124 : -133 TACACGTGTA
AC RSP00974 Mean Expected Number 0.002 +strand -133 : -124 TACACGTGtA
AC RSP00974 Mean Expected Number 0.002 -strand -124 : -133 TACACGTGtA
AC RSP01063 Mean Expected Number 0.001 +strand -83 : -72 ATGATgGATAAT
AC RSP01256 Mean Expected Number 0.003 +strand -132 : -125 ACACGTGT
AC RSP01256 Mean Expected Number 0.003 -strand -125 : -132 ACACGTGT
Totally 11 motifs of 7 different REs have been found
Description of REs found
427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1
485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
673. Group TF: G-box binding TF /AC: RSP00707//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 2 /TF: G-box binding TF
897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981
982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF
1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1
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