> PLPR0023 ..AC:AF334959 ..OS:Zea mays ..GENE:Brittle-2 (Bt2) ..PROD:ADP-glucose pyrophosphorylase small subunit ..[ -200:  +51] ..CDS:+25 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.33   G -  0.16   T -  0.31   C -  0.21

      1  caagaacaaa tgtttacagc ttgttacacc tcccatcaag caaagaaatg
     51  gaatctttta ttttatgtac acgtgtacgg gtagctattg tttataaatt
    101  gcagaagaca cctcaacatg atggataATT GTatacgcaa aactactttc
    151  ctcgaattcc ccattcTATA AATTccagtt aaacttaatt cgtaagatca
    201  ATCATAATTC TCGAGTTGCA AACCATGGAC ATGGCTTTGG CGTCTAAAGC
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00447   Mean Expected Number 0.007   +strand   -162 : -153   AGCAAAGaAA
AC RSP00509   Mean Expected Number 0.002   +strand    -34 :  -23   TATAAATtCCAG
AC RSP00524   Mean Expected Number 0.009   +strand   -132 : -126   ACACGTG
AC RSP00524   Mean Expected Number 0.008   -strand   -125 : -131   ACACGTG
AC RSP00707   Mean Expected Number 0.000   +strand   -133 : -124   TACACGTGTA
AC RSP00707   Mean Expected Number 0.000   -strand   -124 : -133   TACACGTGTA
AC RSP00974   Mean Expected Number 0.002   +strand   -133 : -124   TACACGTGtA
AC RSP00974   Mean Expected Number 0.002   -strand   -124 : -133   TACACGTGtA
AC RSP01063   Mean Expected Number 0.001   +strand    -83 :  -72   ATGATgGATAAT
AC RSP01256   Mean Expected Number 0.003   +strand   -132 : -125   ACACGTGT
AC RSP01256   Mean Expected Number 0.003   -strand   -125 : -132   ACACGTGT

  Totally      11 motifs of     7 different REs have been found


Description of REs found

  427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1
  485. Group RE: TATA box /AC: RSP00509//OS: Avena fatua /GENE: alpha-Amy2/A/RE: TATA box /TF: unknown
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  673. Group TF: G-box binding TF /AC: RSP00707//OS: Nicotiana tabacum /GENE: OLIGO-GUS/RE: G-box 2 /TF: G-box binding TF
  897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC:  RSP00981
  982. Group RE: Fungus RE /Group TF: homeodomain TF /AC: RSP01063//OS: Arabidopsis thaliana /GENE: Nia2/RE: Fungus RE /TF: homeodomain TF
 1159. Group TF: GBF1 /AC: RSP01256//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS3 /TF: GBF1

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