> PLPR0024 ..AC:X62810 ..OS:Antirrhinum majus ..GENE:deficiens ..PROD:DEF A protein ..[ -200: +51] ..CDS:+106 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.38 G - 0.11 T - 0.33 C - 0.18
1 agagatagag ctaataaaca ttgaactcac aactcgtgaa caaaactttg
51 acgtgtgaca aataaataaa tgttacacat taataatatt tgcaacagac
101 cttctactaa ttaagaatac ttttcccttt tatcttaata gtaccgcaac
151 gatacgtaac atagatagaT ATATATAtat atctattctc ttccttactt
201 CATATCTGTA CTTGCAAATC TCAAAATCTT ATCACAGTTT TAGGAAAGTA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00110 Mean Expected Number 0.000 -strand -144 : -151 CACACGTC
AC RSP00423 Mean Expected Number 0.007 +strand -151 : -146 GACGTG
AC RSP00424 Mean Expected Number 0.007 -strand -146 : -151 CACGTC
AC RSP00454 Mean Expected Number 0.003 +strand -48 : -38 TACGTAACATa
AC RSP01136 Mean Expected Number 0.008 -strand -141 : -147 TGTCACA
AC RSP01258 Mean Expected Number 0.001 +strand -152 : -145 TGACGTGT
AC RSP01663 Mean Expected Number 0.000 +strand -154 : -143 TTTGACGTGTGA
Totally 7 motifs of 7 different REs have been found
Description of REs found
108. Group RE: ACGT motif /AC: RSP00110//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: ACGT motif /TF: unknown
404. Group RE: ABRE1 /AC: RSP00423//OS: Zea mays /GENE: rab17/RE: ABRE1 /TF: unknown ||Identical REs AC: RSP01547
405. Group RE: ABRE2 /AC: RSP00424//OS: Zea mays /GENE: rab17/RE: ABRE2 /TF: unknown ||Identical REs AC: RSP01549
432. Group RE: Motif e/f /AC: RSP00454//OS: Pisum sativum /GENE: PSPAL2/RE: Motif e/f /TF: unknown
1054. Group RE: TGTCACA motif /AC: RSP01136//OS: Cucumis melo /GENE: Cucumisin/RE: TGTCACA motif /TF: unknown
1160. Group TF: GBF1 /AC: RSP01258//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS5 /TF: GBF1
1481. Group TF: HY5 /AC: RSP01663//OS: Arabidopsis thaliana /GENE: ARR9 (At3g57040)/RE: C-box (1) /TF: HY5
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