> PLPR0026 ..AC:X82841 ..OS:Arabidopsis thaliana ..GENE:Aco ..PROD:aconitase ..[ -200: +51] ..CDS+1165 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.43 G - 0.13 T - 0.25 C - 0.19
1 gatattaatt cacttgatac aaaaaaaagc aaagaatgga tattcacaaa
51 aaaaagaaag ttggataatt aagaaaatag aatataaaat aaaaaaataa
101 atcaaacagc catcagttct gacgaaaaga gcccaccacg gatctgtcag
151 atttatttcc ttcttacaTA TAAAAAaaat ctgaatcggc tcaggctcgt
201 GTAGCCTCAC CAACTCCGCT TATAAACTTT CTCTCTTCTG AAAACAGATC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00114 Mean Expected Number 0.006 -strand -72 : -81 CTTtTCGTCA
AC RSP00653 Mean Expected Number 0.001 +strand +29 : +39 TTCTCTCTtCT
AC RSP00836 Mean Expected Number 0.001 +strand -64 : -57 CACGGATC
AC RSP00950 Mean Expected Number 0.001 +strand +6 : +16 CTCACCAACtC
AC RSP01507 Mean Expected Number 0.001 -strand -57 : -64 GATCCGTG
Totally 5 motifs of 5 different REs have been found
Description of REs found
112. Group RE: B2 /AC: RSP00114//OS: Glycine max /GENE: GmAux28/RE: B2 /TF: unknown
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
781. Group RE: dOCT /AC: RSP00836//OS: Arabidopsis thaliana /GENE: H4A748/RE: dOCT /TF: unknown ||Identical REs AC: RSP00852
879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown
1363. Group RE: Oct-p /AC: RSP01507//OS: Triticum aestivum /GENE: H1 (TH315)/RE: Oct-p /TF: unknown ||Identical REs AC: RSP01508
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