> PLPR0028 ..AC:M94455 ..OS:Arabidopsis thaliana ..GENE:hsp21 ..PROD:heat shock protein 21 ..[ -200: +51] ..CDS:+77 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.40 G - 0.15 T - 0.24 C - 0.21
1 gaaaaaaaga agatggttcg ggagaagatg agaaaacacg agaaaacgca
51 caaaggttaa caaatagtaa aatagataga tagaaaacaa aacgagtcga
101 gaaacttcgt atcaaatctt caaccttcaa gacctctcct tttgtcactt
151 agagccttct catcctcacc tacaTATATA CActcacttc tacaattgta
201 GTAGATACTC AACAAACTCA GAACTAGAAT TTTCTAATCT TCACTCAGCG
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00035 Mean Expected Number 0.005 -strand -57 : -63 CAAAAGG
AC RSP00163 Mean Expected Number 0.001 +strand -63 : -53 CCTTTTGTCaC
AC RSP00654 Mean Expected Number 0.007 +strand -20 : -11 CACtCACTTC
AC RSP01527 Mean Expected Number 0.004 +strand +9 : +20 TCAACAAACTCA
AC RSP01651 Mean Expected Number 0.002 -strand -105 : -113 CTCGTTTTG
Totally 5 motifs of 5 different REs have been found
Description of REs found
34. Group RE: D1 /Group TF: Dof family /AC: RSP00035//OS: Hordeum vulgare /GENE: Al21/RE: D1 /TF: Dof family
158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1
628. Group RE: CT-B /AC: RSP00654//OS: Spinacia oleracea /GENE: PetH/RE: CT-B /TF: unknown
1375. Group RE: Box II /AC: RSP01527//OS: Pisum sativum /GENE: PsCHS2/RE: Box II /TF: unknown
1470. Group TF: TaVRT2 /AC: RSP01651//OS: Triticum aestivum /GENE: TaVRN1/RE: CArG motif /TF: TaVRT2
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