> PLPR0030 ..AC:Y10379 ..OS:Arabidopsis thaliana ..GENE:ribosomal P40 protein ..PROD:ribosomal P40 protein ..[ -200:  +51] ..CDS:+87 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.29   G -  0.22   T -  0.34   C -  0.16

      1  tcaaagtagc agaaaaagaa ttatctttgt gtctctgtgc acacttggat
     51  ttcggtttaa gacaaaacgg aagttgaacc agttattaat tttggttagc
    101  ttcgattaaa atttgggtaa ccgagtttgg gggtagaata gacattttgc
    151  aaattagggt tttgcttgaT ATATAAAatc cttcaccctt ataagccttt
    201  CGTCGCCTCT TCGTGTGATT TACTGAGTGA AAAAAGCTTA TCGCGGCGAT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00142   Mean Expected Number 0.002   -strand    +48 :  +42   CGCCGCG
AC RSP00234   Mean Expected Number 0.002   -strand     -5 :  -14   GCTTATAAGG
AC RSP00268   Mean Expected Number 0.000   +strand    -72 :  -57   GGGGGTAGAATAGACA
AC RSP00279   Mean Expected Number 0.003   +strand    -47 :  -39   TTAGGGTTT
AC RSP00291   Mean Expected Number 0.000   +strand    -72 :  -39   GGGGGTAGAATAGACA-- +9 bp --TTAGGGTTT
AC RSP00369   Mean Expected Number 0.003   -strand    -39 :  -47   AAACCCTAA
AC RSP01303   Mean Expected Number 0.007   -strand    -38 :  -47   aAAACCCTAA

  Totally       7 motifs of     7 different REs have been found


Description of REs found

  138. Group RE: GC-rich motif /AC: RSP00142//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: GC-rich motif /TF: unknown
  227. Group RE: CArG Box 2 /AC: RSP00234//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CArG Box 2 /TF: unknown
  260. Group RE: trap40 /AC: RSP00268//OS: Arabidopsis thaliana /GENE: A-p40/RE: trap40 /TF: unknown
  270. Group RE: inverted Telo box /AC: RSP00279//OS: Arabidopsis thaliana /GENE: A-p40/RE: inverted Telo box /TF: unknown ||Identical REs AC:  RSP00448
  282. Group RE: trap-telo /AC: RSP00291//OS: Arabidopsis thaliana /GENE: Ap40/RE: trap-telo /TF: unknown
  354. Group RE: telo-box /AC: RSP00369//OS: Arabidopsis thaliana /GENE: eEF1AA1/RE: telo-box /TF: unknown
 1196. Group RE: Telo box /AC: RSP01303//OS: Arabidopsis thaliana /GENE: A1 EF-1alpha/RE: Telo box /TF: unknown