> PLPR0033 ..AC:U42007 ..OS:Arabidopsis thaliana ..GENE:ACT8 ..PROD:actin 8 ..[ -200: +51] ..CDS:+634 ..TSS:201 (+1) # Alternative TSS(s): +72 +11 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.32 G - 0.14 T - 0.33 C - 0.20
1 aaattttcac aaacttttca aaaaagtata ataaaagagg ctgtctgaca
51 gccatgtcac gttatacttt ttccgtatga tcgaaatgat tcgtctttgy
101 ygaatttaat tatttccaaa ATTGAygact ctaaagaaaa aaaaatagtt
151 tttcagataa acccgcctaT ATAAATAgtt caacactcgg tttatttctt
201 CTCCCCTCAA AGAATTGCCT CGTCGTCTTC AGCTTCATCG GCCGTTGCAT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00022 Mean Expected Number 0.009 +strand -173 : -165 ATAATAAAA
AC RSP01692 Mean Expected Number 0.003 -strand -116 : -123 TTCGATCA
Totally 2 motifs of 2 different REs have been found
Description of REs found
21. Group TF: PCF1 /AC: RSP00022//OS: Pisum sativum /GENE: petE/RE: A/T-rich BOX1 /TF: PCF1
1509. Group RE: CARE J /AC: RSP01692//OS: Arabidopsis thaliana /GENE: AOX1a/RE: CARE J /TF: unknown
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