> PLPR0037 ..AC:D15051 ..OS:Hordeum vulgare ..GENE:Ids-2 ..PROD:ids2 ..[ -200:  +51] ..CDS:+86 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.29   G -  0.18   T -  0.23   C -  0.29

      1  ccatactaga cgacgaggac gatttgaacg gcaagtttca cgctgtcact
     51  cccactctcg ctctcatttt attaatcact aacaaacgca tgatttgatc
    101  agacacccaa aataggaata ggagatgcta tcatcaagca tgcttcttgc
    151  tgcccagagc atcccacgac tacaaaacac ggctggccgg aggattataa
    201  CACGATCGAG CGACCAATCC AAGCACCTAC GCACTCTTCT TTGCTCTCAT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP01033   Mean Expected Number 0.008   -strand    -85 :  -94   CCTATTTTGG
AC RSP01456   Mean Expected Number 0.000   +strand    -68 :  -51   ATCAAGCATGCTTCTTGC
AC RSP01457   Mean Expected Number 0.000   +strand   -177 : -151   TTGAACGGCAAGTTTCACGCTGTCACT

  Totally       3 motifs of     3 different REs have been found


Description of REs found

  958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC:  RSP01204
 1326. Group TF: PtMYB4 /AC: RSP01456//OS: Hordeum vulgare /GENE: IDS2/RE: IDE1 /TF: PtMYB4
 1327. Group TF: PtMYB4 /AC: RSP01457//OS: Hordeum vulgare /GENE: IDS2/RE: IDE2 /TF: PtMYB4

Download This Page
Download Promoter Sequence in FASTA Format