> PLPR0038 ..AC:M55449 ..OS:Hordeum vulgare ..GENE:RcaA1 ..PROD:ribulose 1,5-bisphosphate carboxylase activase ..[ -200:  +51] ..CDS:+91 ..TSS:201 (+1) # Alternative TSS(s):   +7 |Taxon: Monocot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.23   G -  0.25   T -  0.20   C -  0.32

      1  ttggtcttga cggtccaagt catccaaccg gccggccaag acgctcagaa
     51  cccaatctcc agcgtgtggc ctctggggat cgggaggctg atccacaagc
    101  aggggtgtgt gtatgccgcc tcctcctcca agctccccac agcagagcag
    151  caatatgcca atccacgtgt atttaaggcg tcacatagct cggcctctat
    201  ACTTTGAGCA GCAGCAGTAT TCATCACTGA TCACCAGCAC AGCCGCGCGC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00097   Mean Expected Number 0.005   +strand   -191 : -184   ACGGTCCA
AC RSP00340   Mean Expected Number 0.009   +strand    -39 :  -30   TCCACGTGTa
AC RSP00655   Mean Expected Number 0.005   +strand    -31 :  -25   TATTTAA
AC RSP00913   Mean Expected Number 0.005   -strand   -177 : -186   GATGACTTGG
AC RSP00974   Mean Expected Number 0.003   -strand    -30 :  -39   TACACGTGgA
AC RSP01255   Mean Expected Number 0.005   -strand    -31 :  -38   ACACGTGG
AC RSP01722   Mean Expected Number 0.000   +strand    -40 :  -29   ATCCACGTGTaT
AC RSP01757   Mean Expected Number 0.003   -strand   -190 : -197   GTCAAGAC

  Totally       8 motifs of     8 different REs have been found


Description of REs found

   95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown
  325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC:  RSP00965
  629. Group RE: TATA box /AC: RSP00655//OS: Oryza sativa /GENE: PAL/RE: TATA box /TF: unknown
  844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
  897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC:  RSP00981
 1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
 1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5
 1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B

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