> PLPR0038 ..AC:M55449 ..OS:Hordeum vulgare ..GENE:RcaA1 ..PROD:ribulose 1,5-bisphosphate carboxylase activase ..[ -200: +51] ..CDS:+91 ..TSS:201 (+1) # Alternative TSS(s): +7 |Taxon: Monocot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.23 G - 0.25 T - 0.20 C - 0.32
1 ttggtcttga cggtccaagt catccaaccg gccggccaag acgctcagaa
51 cccaatctcc agcgtgtggc ctctggggat cgggaggctg atccacaagc
101 aggggtgtgt gtatgccgcc tcctcctcca agctccccac agcagagcag
151 caatatgcca atccacgtgt atttaaggcg tcacatagct cggcctctat
201 ACTTTGAGCA GCAGCAGTAT TCATCACTGA TCACCAGCAC AGCCGCGCGC
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00097 Mean Expected Number 0.005 +strand -191 : -184 ACGGTCCA
AC RSP00340 Mean Expected Number 0.009 +strand -39 : -30 TCCACGTGTa
AC RSP00655 Mean Expected Number 0.005 +strand -31 : -25 TATTTAA
AC RSP00913 Mean Expected Number 0.005 -strand -177 : -186 GATGACTTGG
AC RSP00974 Mean Expected Number 0.003 -strand -30 : -39 TACACGTGgA
AC RSP01255 Mean Expected Number 0.005 -strand -31 : -38 ACACGTGG
AC RSP01722 Mean Expected Number 0.000 +strand -40 : -29 ATCCACGTGTaT
AC RSP01757 Mean Expected Number 0.003 -strand -190 : -197 GTCAAGAC
Totally 8 motifs of 8 different REs have been found
Description of REs found
95. Group RE: 9-mer box /AC: RSP00097//OS: Zea mays /GENE: GapC4/RE: 9-mer box /TF: unknown
325. Group TF: SGBF-1; SGBF-2 /AC: RSP00340//OS: Glycine max /GENE: GmAux28/RE: B1-core /TF: SGBF-1; SGBF-2 ||Identical REs AC: RSP00965
629. Group RE: TATA box /AC: RSP00655//OS: Oryza sativa /GENE: PAL/RE: TATA box /TF: unknown
844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
897. Group RE: G-box /AC: RSP00974//OS: Glycine max /GENE: vspB/RE: G-box /TF: unknown ||Identical REs AC: RSP00981
1158. Group TF: GBF1 /AC: RSP01255//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS2 /TF: GBF1
1530. Group RE: G-box /Group TF: STF1/HY5 /AC: RSP01722//OS: Arabidopsis thaliana /GENE: IAA17/AXR3 (At1g04250)/RE: G-box /TF: STF1/HY5
1562. Group TF: B /AC: RSP01757//OS: Glycine max /GENE: a2/RE: BBS /TF: B
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