> PLPR0039 ..AC:J02798 ..OS:Brassica napus ..GENE:napA ..PROD:1.7S napin seed storage protein ..[ -200:  +51] ..CDS:+45 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.33   G -  0.12   T -  0.26   C -  0.29

      1  cattagctac acgttacaca tagcatgcag ccgcggagaa ttgtttttct
     51  tcgccacttg tcactccctt caaacaccta agagcttctc tctcacagca
    101  cacacatACA ATcacatgcg tgcatgcatt attacacgtg atcgccatgc
    151  aaatctcctt tatagccTAT AAATTaactc atccgcttca ctctttactc
    201  AAACCAAAAC TCATCAATAC AAACAAGATT AAAAACATAC ACGAATGGCG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00016   Mean Expected Number 0.003   -strand    -75 :  -81   CATGCAC
AC RSP00056   Mean Expected Number 0.005   +strand   -148 : -139   GCCACTTGTC
AC RSP00061   Mean Expected Number 0.000   +strand   -148 : -123   GCCACTTGTC-- +8 bp --CAAACACC
AC RSP00062   Mean Expected Number 0.000   +strand    -78 :  -61   CATGCA-- +6 bp --CACGTG
AC RSP00350   Mean Expected Number 0.002   +strand    -82 :  -72   CGTgCATGCAT
AC RSP00524   Mean Expected Number 0.008   +strand    -67 :  -61   ACACGTG
AC RSP00817   Mean Expected Number 0.003   +strand    -68 :  -59   TACACGTGaT
AC RSP00978   Mean Expected Number 0.002   -strand    -59 :  -68   ATCACGTGTa
AC RSP00062   Mean Expected Number 0.000   +strand    -66 :  -50   CACGTG-- +5 bp --CATGCA
AC RSP01469   Mean Expected Number 0.005   +strand    -89 :  -80   TCACATGcGT
AC RSP01699   Mean Expected Number 0.008   +strand    -65 :  -59   ACGTGAT

  Totally      11 motifs of    11 different REs have been found


Description of REs found

   15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown
   55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
   60. Group RE: B-box /Group TF: ABI3 /AC: RSP00061//OS: Brassica napus /GENE: napA/RE: B-box /TF: ABI3
   61. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 1 & box 2) /TF: ABI3
  335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown
  500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
  763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
  900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown
  922. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 2 & box 3) /TF: ABI3
 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
 1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown

Download This Page
Download Promoter Sequence in FASTA Format