> PLPR0039 ..AC:J02798 ..OS:Brassica napus ..GENE:napA ..PROD:1.7S napin seed storage protein ..[ -200: +51] ..CDS:+45 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.12 T - 0.26 C - 0.29
1 cattagctac acgttacaca tagcatgcag ccgcggagaa ttgtttttct
51 tcgccacttg tcactccctt caaacaccta agagcttctc tctcacagca
101 cacacatACA ATcacatgcg tgcatgcatt attacacgtg atcgccatgc
151 aaatctcctt tatagccTAT AAATTaactc atccgcttca ctctttactc
201 AAACCAAAAC TCATCAATAC AAACAAGATT AAAAACATAC ACGAATGGCG
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00016 Mean Expected Number 0.003 -strand -75 : -81 CATGCAC
AC RSP00056 Mean Expected Number 0.005 +strand -148 : -139 GCCACTTGTC
AC RSP00061 Mean Expected Number 0.000 +strand -148 : -123 GCCACTTGTC-- +8 bp --CAAACACC
AC RSP00062 Mean Expected Number 0.000 +strand -78 : -61 CATGCA-- +6 bp --CACGTG
AC RSP00350 Mean Expected Number 0.002 +strand -82 : -72 CGTgCATGCAT
AC RSP00524 Mean Expected Number 0.008 +strand -67 : -61 ACACGTG
AC RSP00817 Mean Expected Number 0.003 +strand -68 : -59 TACACGTGaT
AC RSP00978 Mean Expected Number 0.002 -strand -59 : -68 ATCACGTGTa
AC RSP00062 Mean Expected Number 0.000 +strand -66 : -50 CACGTG-- +5 bp --CATGCA
AC RSP01469 Mean Expected Number 0.005 +strand -89 : -80 TCACATGcGT
AC RSP01699 Mean Expected Number 0.008 +strand -65 : -59 ACGTGAT
Totally 11 motifs of 11 different REs have been found
Description of REs found
15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown
55. Group TF: ABI3 /AC: RSP00056//OS: Brassica napus /GENE: napA/RE: ABRE Bd /TF: ABI3
60. Group RE: B-box /Group TF: ABI3 /AC: RSP00061//OS: Brassica napus /GENE: napA/RE: B-box /TF: ABI3
61. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 1 & box 2) /TF: ABI3
335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown
500. Group TF: DPBF-1; DPBF-2 /AC: RSP00524//OS: Daucus carota /GENE: Dc3/RE: E4-core /TF: DPBF-1; DPBF-2
763. Group TF: ACE-binding TF /AC: RSP00817//OS: Arabidopsis thaliana /GENE: CFI/RE: ACE-core (AtCFI) /TF: ACE-binding TF
900. Group RE: G-box /AC: RSP00978//OS: Glycine max /GENE: vspA/RE: G-box /TF: unknown
922. Group TF: ABI3 /AC: RSP00062//OS: Brassica napus /GENE: napA/RE: RY/G (box 2 & box 3) /TF: ABI3
1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
1510. Group RE: CARE B1 /AC: RSP01699//OS: Arabidopsis thaliana /GENE: At2g21640/UPOX/RE: CARE B1 /TF: unknown
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