> PLPR0043 ..AC:AJ003139 ..OS:Daucus carota ..GENE:DHFR-TS ..PROD:dihydrofolate reductase-thymidylate synthetase ..[ -200:  +51] ..CDS:+219 ..TSS:201 (+1) # Alternative TSS(s):  +72  +27 +262 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.38   G -  0.13   T -  0.38   C -  0.10

      1  tcaaatattg ttattataat aataatatta ttatataaac agtttttaat
     51  ggcaaattta ttaagttgta ttattataaa aataatttta catagataca
    101  atttatttaa ttttaaatat atataattat ttctaatATT GTagtccgta
    151  aattatttat ttaattcTAT ATAAAagtag gttgctgatg agagaaagga
    201  GAACAAGAGG AGACACAATT CACTGCACTG CCTTGGCGGC ACTCCGCGTC
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00117   Mean Expected Number 0.010   -strand   -114 : -126   AATTATTTTTAtA
AC RSP00140   Mean Expected Number 0.010   -strand   -114 : -126   AATTATTTTTATa
AC RSP00170   Mean Expected Number 0.000   +strand    -54 :  -39   CgTAAATTATTTATTT
AC RSP00307   Mean Expected Number 0.007   -strand    +37 :  +32   GCCAAG
AC RSP00438   Mean Expected Number 0.001   +strand    +35 :  +40   GGCGGC
AC RSP00483   Mean Expected Number 0.006   -strand    +40 :  +36   GCCGC
AC RSP00677   Mean Expected Number 0.005   -strand    +31 :  +26   GCAGTG
AC RSP00677   Mean Expected Number 0.005   -strand    +26 :  +21   GCAGTG
AC RSP00710   Mean Expected Number 0.007   +strand    -77 :  -65   TAATTATTTCTaA
AC RSP00807   Mean Expected Number 0.001   -strand    +40 :  +35   GCCGCC
AC RSP00881   Mean Expected Number 0.008   -strand    -12 :  -21   ATCAgCAACC
AC RSP01576   Mean Expected Number 0.005   +strand    +41 :  +46   ACTCCG
AC RSP01733   Mean Expected Number 0.002   +strand    +44 :  +49   CCGCGT
AC RSP01762   Mean Expected Number 0.007   -strand    +36 :  +31   CCAAGG

  Totally      14 motifs of    13 different REs have been found


Description of REs found

  115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown
  136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1
  164. Group RE: Element 2 /AC: RSP00170//OS: Glycine max /GENE: lbc3/RE: Element 2 /TF: unknown
  294. Group RE: GCCAAG motif /AC: RSP00307//OS: Hordeum vulgare /GENE: Chi26/RE: GCCAAG motif /TF: unknown
  418. Group RE: PR-box /AC: RSP00438//OS: Arabidopsis thaliana /GENE: PR-1/RE: PR-box /TF: unknown
  460. Group RE: GC-2 /AC: RSP00483//OS: Zea mays /GENE: Adh1/RE: GC-2 /TF: unknown
  646. Group RE: Box 1 /AC: RSP00677//OS: Hordeum vulgare /GENE: Amy32b/RE: Box 1 /TF: unknown
  676. Group RE: AT1-box /AC: RSP00710//OS: Pisum sativum /GENE: TOP2/RE: AT1-box /TF: unknown
  760. Group RE: GCC box /Group TF: Pti4 /AC: RSP00807//OS: Arabidopsis thaliana /GENE: PDF1.2/RE: GCC box /TF: Pti4 ||Identical REs AC:  RSP00809  RSP00811  RSP00814  RSP00921  RSP01328
  817. Group TF: Dof family /AC: RSP00881//OS: Hordeum vulgare /GENE: Al21/RE: M2 /TF: Dof family
 1405. Group RE: ICEr2 /AC: RSP01576//OS: Arabidopsis thaliana /GENE: CBF2/RE: ICEr2 /TF: unknown
 1541. Group TF: CAMTA3 /AC: RSP01733//OS: Arabidopsis thaliana /GENE: CBF2/RE: CM2 /TF: CAMTA3
 1567. Group TF: NSP1 /AC: RSP01762//OS: Arabidopsis thaliana /GENE: ANAC13 (At1g32870)/RE: UVBox (ANAC13) /TF: NSP1