> PLPR0048 ..AC:J02817.1 ..OS:Triticum aestivum ..GENE: GIR ..PROD:gibberellin ..[ -200: +51] ..CDS: +44 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.35 G - 0.19 T - 0.14 C - 0.32
1 cgctgataat acaaaacagt cgtgtccaaa tacaaaaggc aaaaaaaaag
51 aatttaaaaa gcagaggaat ctcatctcag gaagcgcttc caagcaaagt
101 caagaacaga gcacagcacc agcagcagtc cgttgcaagc tccaccccga
151 aatccagcgc tccccacgcT ATAAAGCccg gggatatgga cggaacctcc
201 GCCAAATCCC CACGAAACCG CCACCTCCCC ACCATCGTTA CCAATGGCGA
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00132 Mean Expected Number 0.007 +strand +20 : +27 GCCACCTC
AC RSP00179 Mean Expected Number 0.010 -strand -143 : -149 TTTAAAT
AC RSP01093 Mean Expected Number 0.003 +strand -112 : -102 TCcAAGCAAAG
AC RSP01343 Mean Expected Number 0.007 +strand -181 : -176 TCGTGT
Totally 4 motifs of 4 different REs have been found
Description of REs found
130. Group TF: ROM1; ROM2 /AC: RSP00132//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: vicilin box /TF: ROM1; ROM2
173. Group RE: AT-rich motif /AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: AT-rich motif /TF: unknown
1011. Group RE: box 2 /AC: RSP01093//OS: Pisum sativum /GENE: GS2/RE: box 2 /TF: unknown
1227. Group RE: TCGTGT motif /AC: RSP01343//OS: Daucus carota /GENE: Dc3/RE: TCGTGT motif /TF: unknown
Download This Page
Download Promoter Sequence in FASTA Format