> PLPR0050 ..AC:X60033 ..OS:Glycine max ..GENE:GH3 ..PROD:auxin-responsive GH3 product ..[ -200:  +51] ..TSS:201 (+1) # Alternative TSS(s):  +15 |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.26   G -  0.11   T -  0.31   C -  0.31

      1  accatgcacc atccctggcc ctcgtgtctc ctcaataagc tacacaattt
     51  gaaacataca cgcaatcctt tgtctcaata agttccactc aggtactgtt
    101  ttctcccgca accatgacgt aattctgtaa atcacatgtt tcatgctccc
    151  aattattttc cgcttcTATA AATAcctctc ccatttcgca acttttctcc
    201  ATCCATACTC ATCCACTTCT TGAACCGTGC CTTAACTAAA CTAGAGCTAG
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00112   Mean Expected Number 0.002   +strand    -86 :  -79   TGACGTAA
AC RSP00220   Mean Expected Number 0.000   +strand   -183 : -159   GCCCTCGTGTCTCCTCAATAAGCTA
AC RSP00236   Mean Expected Number 0.000   +strand   -142 : -111   CACGCAATCCTTTGTCTCAATAAGTTCCACTC
AC RSP00256   Mean Expected Number 0.000   +strand   -181 : -171   CCTCGTGTCTC
AC RSP01070   Mean Expected Number 0.000   +strand   -142 : -125   CACGCAATCCTTTGTCTC
AC RSP01296   Mean Expected Number 0.003   +strand    -35 :  -27   CTATAAATA
AC RSP01301   Mean Expected Number 0.001   +strand    -35 :  -26   CTATAAATAC
AC RSP01469   Mean Expected Number 0.007   +strand    -69 :  -60   TCACATGTtT
AC RSP01599   Mean Expected Number 0.004   -strand   -147 : -154   TTTCAAAT

  Totally       9 motifs of     9 different REs have been found


Description of REs found

  110. Group RE: TGA1 /AC: RSP00112//OS: Glycine max /GENE: GH3/RE: TGA1 /TF: unknown
  213. Group RE: D1 /AC: RSP00220//OS: Glycine max /GENE: GH3/RE: D1 /TF: unknown
  229. Group RE: D4 /AC: RSP00236//OS: Glycine max /GENE: GH3/RE: D4 /TF: unknown
  249. Group RE: D1 /Group TF: ARF /AC: RSP00256//OS: Glycine max /GENE: GH3; synthetic promoter constructions/RE: D1 /TF: ARF ||Identical REs AC:  RSP01069
  988. Group RE: D4 /Group TF: PvAlf /AC: RSP01070//OS: Arachis hypogea; Phaseolus vulgaris /GENE: GH3/RE: D4 /TF: PvAlf
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302
 1339. Group TF: Opaque-2 (O2) /AC: RSP01469//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z1 /TF: Opaque-2 (O2)
 1420. Group RE: Inr /AC: RSP01599//OS: Spinacia oleracea /GENE: RPS1/RE: Inr /TF: unknown