> PLPR0053 ..AC:L11707 ..OS:Hevea brasiliensis ..GENE:SODMn ..PROD:superoxide dismutase (manganese) ..[ -200: +51] ..CDS:+25 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.26 G - 0.22 T - 0.24 C - 0.27
1 actccaagca cactgataat acacttaaga ctgattggac tagtttaggc
51 ccacggtttt atgcggcgaa gagtaaaacg gtcgccaacg agccagctag
101 ccgctactct aggatgacct ggcctgtctc gtgacgtcgc aaagagaaaa
151 gcaggagccg tggtttTATA TATActagca tttctttctt cccctgccgc
201 ACCACAGAAT CCTTCGACAA ATCCATGGCT CTGCGATCTC TAGTGACCCG
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00231 Mean Expected Number 0.010 -strand -163 : -169 CCAATCA
AC RSP00860 Mean Expected Number 0.001 -strand -12 : -20 AGAAAGAAA
AC RSP00913 Mean Expected Number 0.003 +strand -88 : -79 GATGACCTGG
Totally 3 motifs of 3 different REs have been found
Description of REs found
224. Group RE: CCAAT box 1 /AC: RSP00231//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: CCAAT box 1 /TF: unknown
796. Group TF: BPC1 /AC: RSP00860//OS: Arabidopsis thaliana /GENE: STK/RE: GA-1 /TF: BPC1
844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
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