> PLPR0056 ..AC:X63093 ..OS:Lycopersicon esculentum ..GENE:gast1 ..PROD:gast1 ..[ -200: +51] ..CDS:+40 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.32 G - 0.19 T - 0.30 C - 0.19
1 ccggttaata gtttggtcca aaaatattga tgcagttaat agattttgga
51 ccaaactatc gatgctgtgt atagatttat tcaattttgc ataggggata
101 ctgttggagt gtgacaacag caagtgctag gctaaagaga ttaaccactt
151 gagaagatcc ctctcTATAA ATAgaagtcg attctctcaa agctctacac
201 ACTTCACTTC CTCTCTTAGC TTCACACAAA ATTACTACAA TGGCTGGGAA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00225 Mean Expected Number 0.000 -strand +43 : +31 CCATTGTAGTAAT
AC RSP00522 Mean Expected Number 0.009 +strand -56 : -50 CCACTTG
AC RSP00863 Mean Expected Number 0.001 -strand +16 : +8 AGAGAGGAA
AC RSP01296 Mean Expected Number 0.004 +strand -36 : -28 CTATAAATA
Totally 4 motifs of 4 different REs have been found
Description of REs found
218. Group TF: LFY; WUS /AC: RSP00225//OS: Arabidopsis thaliana /GENE: AGAMAOUS (AG)/RE: LBS/WBS3 /TF: LFY; WUS
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
799. Group TF: BPC1 /AC: RSP00863//OS: Arabidopsis thaliana /GENE: STK/RE: GA-4 /TF: BPC1
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
Download This Page
Download Promoter Sequence in FASTA Format