> PLPR0057 ..AC:U26423 ..OS:Lycopersicon esculentum ..GENE:tas14 ..PROD:dehydrin TAS14 ..[ -200: +51] ..CDS:+79 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.26 G - 0.12 T - 0.37 C - 0.25
1 tttcgagttt ctgtgtttgg gttttagtta aatatctgtt tatttatgcc
51 gacactctta cacttgtttc caactttcat ttgccacgat cccgctaaag
101 gctccatcca ttactcgctt aacacctgtt gtgcctctaa tcagcctatc
151 ctacttttac tttcccTATA TAAAtcccta ctccctgaac ctccatactt
201 GAATGTTATC TGCAGTAGCC AAAAACAAAG TAAAAAATTA AACAGTGTTT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00021 Mean Expected Number 0.000 +strand +25 : +36 AcAAAGTAAAAA
AC RSP01015 Mean Expected Number 0.001 -strand -118 : -127 CAAATGAAAG
AC RSP01167 Mean Expected Number 0.005 +strand -172 : -164 TAAATATCT
Totally 3 motifs of 3 different REs have been found
Description of REs found
20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1
940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF
1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins
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