> PLPR0057 ..AC:U26423 ..OS:Lycopersicon esculentum ..GENE:tas14 ..PROD:dehydrin TAS14 ..[ -200:  +51] ..CDS:+79 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.26   G -  0.12   T -  0.37   C -  0.25

      1  tttcgagttt ctgtgtttgg gttttagtta aatatctgtt tatttatgcc
     51  gacactctta cacttgtttc caactttcat ttgccacgat cccgctaaag
    101  gctccatcca ttactcgctt aacacctgtt gtgcctctaa tcagcctatc
    151  ctacttttac tttcccTATA TAAAtcccta ctccctgaac ctccatactt
    201  GAATGTTATC TGCAGTAGCC AAAAACAAAG TAAAAAATTA AACAGTGTTT
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00021   Mean Expected Number 0.000   +strand    +25 :  +36   AcAAAGTAAAAA
AC RSP01015   Mean Expected Number 0.001   -strand   -118 : -127   CAAATGAAAG
AC RSP01167   Mean Expected Number 0.005   +strand   -172 : -164   TAAATATCT

  Totally       3 motifs of     3 different REs have been found


Description of REs found

   20. Group TF: GT-1 /AC: RSP00021//OS: Catharantus roseus /GENE: TDC/RE: GT-1#Box7 /TF: GT-1
  940. Group TF: GAPF /AC: RSP01015//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 3 /TF: GAPF
 1079. Group RE: TATA box /Group TF: HMG proteins /AC: RSP01167//OS: Zea mays /GENE: pMS1/RE: TATA box /TF: HMG proteins

Download This Page
Download Promoter Sequence in FASTA Format