> PLPR0059 ..AC:M72708 ..OS:Zea mays ..GENE:zein protein ..PROD:zein protein ..[ -200: +51] ..CDS:+63 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.17 T - 0.27 C - 0.23
1 gcattacaaa gttagcttca caagcgtatg aattcattga caacccttga
51 catgtaaagt tgattcatat gtataagaaa gcttaatgat ctatctgtac
101 atccaaatcc atgtactatg tttccacgtc atgcaacgca acattccaaa
151 accatggatc atcTATAAAT Ggctagctcc cacatatgaa ctagtctcta
201 TCATCATCCA ATCCAGATCA GCAAAGCGGC AGTGCGTAGA GAGGATCGTC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00214 Mean Expected Number 0.003 -strand -70 : -77 TGACGTGG
AC RSP00215 Mean Expected Number 0.003 +strand -77 : -70 CCACGTCA
AC RSP00442 Mean Expected Number 0.007 -strand -187 : -196 TAACTTTGtA
AC RSP00495 Mean Expected Number 0.005 +strand -148 : -141 TGTAAAGT
AC RSP00985 Mean Expected Number 0.005 +strand -191 : -182 AGTTAGcTTC
AC RSP01275 Mean Expected Number 0.005 +strand -78 : -69 TCCACGTCAT
Totally 6 motifs of 6 different REs have been found
Description of REs found
207. Group TF: TGA1; GBF1 /AC: RSP00214//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Hex motif /TF: TGA1; GBF1 ||Identical REs AC: RSP01257 RSP01474
208. Group TF: HBP-11(17); HBP-1b(c38) /AC: RSP00215//OS: Triticum aestivum /GENE: H3/RE: Hex /TF: HBP-11(17); HBP-1b(c38)
422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1
471. Group RE: P-box 2 /AC: RSP00495//OS: Triticum aestivum /GENE: LMW-glutenin/RE: P-box 2 /TF: unknown ||Identical REs AC: RSP00686
906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305)
1174. Group RE: ACE 2 /AC: RSP01275//OS: Petroselinum crispum /GENE: PcACO-IV/RE: ACE 2 /TF: unknown
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