> PLPR0063 ..AC:U35619 ..OS:Nicotiana tabacum ..GENE:rbcmtT ..PROD:ribulose-1,5 bisphosphate carboxylase N-methyl transferase/..[ -200:  +51] ..CDS:+94 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.43   G -  0.16   T -  0.28   C -  0.13

      1  gccaaataca aattaattct tattaaaaat atttcttcaa aaatactttt
     51  aaaaataatt tttaaaataa ggtgatttta gaagtggggt gaaagagaat
    101  attagttgct taaaggaaaa taacgtcacc tagtttgaca gaattaccgc
    151  aaatgcaact caaagTACAA AAAaatgaaa aaagaaaaaa ggtcgtgtgt
    201  TAACTGTATA ACTTCCTCAT CTGGAAATCT AGCAACCGTA AAGCGAGTAT
    251  C

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00117   Mean Expected Number 0.002   +strand   -147 : -135   AATaATTTTTAAA
AC RSP00117   Mean Expected Number 0.005   -strand   -141 : -153   AATTATTTTTAAA
AC RSP00129   Mean Expected Number 0.010   -strand     -4 :   -9   CACGAC
AC RSP00158   Mean Expected Number 0.006   +strand    -98 :  -88   TAgTTGCTTAA
AC RSP00207   Mean Expected Number 0.001   -strand    -51 :  -59   GCGGTAATT
AC RSP00918   Mean Expected Number 0.005   -strand    -71 :  -80   GGTGACGTTA
AC RSP01654   Mean Expected Number 0.004   -strand    -71 :  -80   GGTGACGTTA

  Totally       7 motifs of     6 different REs have been found


Description of REs found

  115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown
  127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown
  153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown
  200. Group TF: GT-2 /AC: RSP00207//OS: Oryza sativa /GENE: PHYA/RE: GTE /TF: GT-2
  849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2
 1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5

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