> PLPR0063 ..AC:U35619 ..OS:Nicotiana tabacum ..GENE:rbcmtT ..PROD:ribulose-1,5 bisphosphate carboxylase N-methyl transferase/..[ -200: +51] ..CDS:+94 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.43 G - 0.16 T - 0.28 C - 0.13
1 gccaaataca aattaattct tattaaaaat atttcttcaa aaatactttt
51 aaaaataatt tttaaaataa ggtgatttta gaagtggggt gaaagagaat
101 attagttgct taaaggaaaa taacgtcacc tagtttgaca gaattaccgc
151 aaatgcaact caaagTACAA AAAaatgaaa aaagaaaaaa ggtcgtgtgt
201 TAACTGTATA ACTTCCTCAT CTGGAAATCT AGCAACCGTA AAGCGAGTAT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00117 Mean Expected Number 0.002 +strand -147 : -135 AATaATTTTTAAA
AC RSP00117 Mean Expected Number 0.005 -strand -141 : -153 AATTATTTTTAAA
AC RSP00129 Mean Expected Number 0.010 -strand -4 : -9 CACGAC
AC RSP00158 Mean Expected Number 0.006 +strand -98 : -88 TAgTTGCTTAA
AC RSP00207 Mean Expected Number 0.001 -strand -51 : -59 GCGGTAATT
AC RSP00918 Mean Expected Number 0.005 -strand -71 : -80 GGTGACGTTA
AC RSP01654 Mean Expected Number 0.004 -strand -71 : -80 GGTGACGTTA
Totally 7 motifs of 6 different REs have been found
Description of REs found
115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown
127. Group RE: R-motif /AC: RSP00129//OS: Zea mays /GENE: Bronze2/RE: R-motif /TF: unknown
153. Group RE: D3 /AC: RSP00158//OS: Glycine max /GENE: GmAux28/RE: D3 /TF: unknown
200. Group TF: GT-2 /AC: RSP00207//OS: Oryza sativa /GENE: PHYA/RE: GTE /TF: GT-2
849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2
1472. Group TF: STF1/HY5 /AC: RSP01654//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: STF1/HY5 BS (cons) /TF: STF1/HY5
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