> PLPR0065 ..AC:X54314 ..OS:Oryza sativa ..GENE:GluB-1 ..PROD:glutelin ..[ -200: +51] ..CDS:+45 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.30 G - 0.16 T - 0.34 C - 0.20
1 gtattactcc aaaagcacca gaagtttgtc atggctgagt catgaaatgt
51 atagttcaat cttgcaaagt tgcctttcct tttgtactgt gttttaacac
101 tacaagccat atATTGTctg tacgtgcaac aaactatatc accatgtatc
151 ccaagatgct tttttattgc TATATAAAct agcttggtct gtctttgaac
201 TCACATCAAT TAGCTTAAGT TTCCATAAGC AAGTACAAAT AGCTATGGCG
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00041 Mean Expected Number 0.000 +strand -74 : -61 CAACAAACTATATC
AC RSP00072 Mean Expected Number 0.007 +strand -81 : -75 GTACGTG
AC RSP00405 Mean Expected Number 0.005 -strand -188 : -195 TTTGGAGT
AC RSP00442 Mean Expected Number 0.007 -strand -129 : -138 cAACTTTGCA
AC RSP00694 Mean Expected Number 0.000 +strand -73 : -61 AACAAACTATATC
AC RSP00871 Mean Expected Number 0.004 +strand -167 : -158 GcTGAGTCAT
AC RSP01481 Mean Expected Number 0.000 +strand -78 : -63 CGTGCAACAAACTATA
Totally 7 motifs of 7 different REs have been found
Description of REs found
40. Group RE: AACA box (P) /AC: RSP00041//OS: Oryza sativa /GENE: GluB-1/RE: AACA box (P) /TF: unknown
71. Group RE: ACGT box /AC: RSP00072//OS: Oryza sativa /GENE: GluB-1/RE: ACGT box /TF: unknown
387. Group RE: adjb /AC: RSP00405//OS: Nicotiana tabacum /GENE: RNP2/RE: adjb /TF: unknown
422. Group TF: Dof1 /AC: RSP00442//OS: Zea mays /GENE: cyPPDK1/RE: box b /TF: Dof1
660. Group RE: AACAA motif /AC: RSP00694//OS: Oryza sativa /GENE: Gt1/RE: AACAA motif /TF: unknown ||Identical REs AC: RSP01062
807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown
1349. Group TF: OSMYB5 /AC: RSP01481//OS: Oryza sativa /GENE: GluB-1/RE: OSMYB5 BS (P) /TF: OSMYB5
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