> PLPR0066 ..AC:X58877 S76586 ..OS:Oryza sativa ..GENE:gns1 ..PROD:beta-glucanase ..[ -200: +51] ..CDS:+130 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.24 G - 0.27 T - 0.24 C - 0.25
1 gcaacggccg gccggctgcc ctagcaagaa agctggtcaa ttggaagtag
51 gctaaatgaa tgaattgtgc tggggacgtt gggccagccg caagtggatt
101 ggACAATttg gacaagataa cccttctctc tctctctctg ccttgtctcc
151 tctctactcc tcagcatcTA TATAAGggcc ttgcaggcag tggctctcac
201 ACCAACGAAA CAAGGAGAGA CTCAGAGAGG AGGCGTGTTG GTTAGCTCAT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00060 Mean Expected Number 0.001 -strand +38 : +27 ACaCGCCTCCTC
AC RSP00467 Mean Expected Number 0.003 +strand -167 : -158 TGGTCAATTG
AC RSP00864 Mean Expected Number 0.001 -strand -62 : -70 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.001 -strand -64 : -72 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.001 -strand -66 : -74 AGAGAGAGA
AC RSP00864 Mean Expected Number 0.001 -strand -68 : -76 AGAGAGAGA
AC RSP01283 Mean Expected Number 0.000 -strand -61 : -77 cAGAGAGAGAGAGAGAA
Totally 7 motifs of 4 different REs have been found
Description of REs found
59. Group TF: ABF /AC: RSP00060//OS: Zea mays /GENE: rab28/RE: CE3 /TF: ABF
445. Group RE: ERE1 /AC: RSP00467//OS: Dianthus caryophyylus /GENE: hcbt2/RE: ERE1 /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
1180. Group RE: GAGA element /AC: RSP01283//OS: OS: Glycine max /GENE: gsa1/RE: GAGA element /TF: unknown
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