> PLPR0069 ..AC:X56336 ..OS:Oryza sativa ..GENE:RAmy3A ..PROD:alpha-amylase ..[ -200:  +51] ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.26   G -  0.22   T -  0.25   C -  0.28

      1  atctcaggat tttaagaatt atgttccgaa attctgaacc atgcatgctg
     51  acaggtttgg catgccccta tggcggcgaa attaagacag tgttgcgcgc
    101  ccttatccgt ttgattcgag CCAATccaga aaaccaggag catcccggcc
    151  gtctatcccc gcactacTAT AAATActtgc ccggagacga tttcttctcc
    201  ACGCAGCAAG AGCCGATCGA TCATTGTCCA AGTCTCCAAG CGATCAGCTA
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00108   Mean Expected Number 0.004   +strand   -161 : -154   CATGCATG
AC RSP00108   Mean Expected Number 0.004   -strand   -154 : -161   CATGCATG
AC RSP00304   Mean Expected Number 0.006   +strand   -152 : -145   TGACAGGT
AC RSP01074   Mean Expected Number 0.002   +strand   -162 : -153   CCATGCATGC
AC RSP01074   Mean Expected Number 0.002   -strand   -153 : -162   GCATGCATGg
AC RSP01109   Mean Expected Number 0.004   -strand   -179 : -186   ATAATTCT
AC RSP01296   Mean Expected Number 0.001   +strand    -34 :  -26   CTATAAATA
AC RSP01301   Mean Expected Number 0.010   +strand    -34 :  -25   CTATAAATAC
AC RSP01401   Mean Expected Number 0.001   +strand   -115 : -105   GACAGTGTTgC

  Totally       9 motifs of     7 different REs have been found


Description of REs found

  106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC:  RSP01169  RSP01452
  291. Group TF: KN1/KIP /AC: RSP00304//OS: Zea mays /GENE: Synthetic OLIGO/RE: KN1/KIP BS /TF: KN1/KIP
  992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
 1027. Group RE: rAT-2 /AC: RSP01109//OS: Spinacia oleracea /GENE: rps22/RE: rAT-2 /TF: unknown
 1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
 1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC:  RSP01302
 1283. Group TF: TAC1 /AC: RSP01401//OS: Arabidopsis thaliana /GENE: BT2/RE: TAC1 BS /TF: TAC1