> PLPR0072 ..AC:U26660 ..OS:Oryza sativa ..GENE:Pdc1 ..PROD:pyruvate decarboxylase ..[ -200: +51] ..CDS:+127 ..TSS:201 (+1) # Alternative TSS(s): +5 |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.30 G - 0.19 T - 0.18 C - 0.33
1 gaccggttga cggtatacac caatgcatga cgcacaaggt ttggccagcc
51 aaaccacggc gaaaggagca cgcgaaacaa gtcaggcgat tgccagtttg
101 ccacccatct caccagaccA CAATtctgca tgcagcaacg gcgccaaaga
151 cggttttttc tccctcctcT ATATAAGccc cacaatgccc accaccagct
201 TGTCACAACT CACAGCCAAA ACCTCGTACA ATTTCAGCTA GCCACAAGCA
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00653 Mean Expected Number 0.001 +strand -43 : -33 TTCTCcCTCCT
AC RSP00918 Mean Expected Number 0.001 +strand -195 : -186 GTTGACGGTA
Totally 2 motifs of 2 different REs have been found
Description of REs found
627. Group RE: CT-LB /AC: RSP00653//OS: Spinacia oleracea /GENE: petH/RE: CT-LB /TF: unknown
849. Group TF: Opaque-2 /AC: RSP00918//OS: Zea mays /GENE: O2/RE: B5-like motif /TF: Opaque-2
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