> PLPR0074 ..AC:X55736 ..OS:Petroselinum crispum ..GENE:PR2 ..PROD:Pathogenesis-related protein ..[ -200: +51] ..CDS:+104 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.31 G - 0.16 T - 0.34 C - 0.18
1 ttccaaggcg acaaaaaagt ccagatcata gtggccaaga atgtatgttc
51 atctttgatg tgccatgaag ttgaaattca atagtgtgct aattgtttaa
101 gagttgtgtc caatagggct cctgtACAAT tcaaacattg ttcaaacaag
151 gaacctaagt tctggcaaTA TATATAccct ctacttcatt catttttctt
201 GCACCAAATT AAGTTTTTGC TAGCTAATAC AAGTAGTATC ATCATTTTCT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00211 Mean Expected Number 0.000 +strand -112 : -102 CTAATTGTTTA
AC RSP00346 Mean Expected Number 0.000 +strand -76 : -46 TACAATTCAAACATTGTTCAAACAAGGAACC
AC RSP00985 Mean Expected Number 0.009 -strand -41 : -50 AcTTAGGTTC
AC RSP01032 Mean Expected Number 0.007 +strand +4 : +13 CCAAATTAAG
Totally 4 motifs of 4 different REs have been found
Description of REs found
204. Group TF: HD /AC: RSP00211//OS: Petroselinum crispum /GENE: pr2/RE: HD-BS /TF: HD
331. Group RE: Box D /AC: RSP00346//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: Box D /TF: unknown
906. Group TF: PBP (Myb305) /AC: RSP00985//OS: Antirrhinum majus /GENE: gPAL2/RE: P-box /TF: PBP (Myb305)
957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC
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