> PLPR0075 ..AC:U46217 ..OS:Petroselinum crispum ..GENE:CPRF1 ..PROD:CPRF1 ..[ -200: +51] ..CDS+1317 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.33 G - 0.16 T - 0.25 C - 0.26
1 tcttatctaa ctacaagtaa aattaatata aacaaaaaag ataaattcac
51 atggccatgt cagccacatg accgggggta gaaatagtat agttgggctA
101 CAATaggaac cctattgtgc acgacgcgta gaccgactca tctctcgaca
151 cgtatgcatc tctttactta taattcggac agcgcgaatc cctatgcgcc
201 AGCTCATCCT ACCACCCATA CATCCTCACA CCACATTGAG ATACACAATT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00068 Mean Expected Number 0.007 +strand -78 : -69 GACgCGTAGA
AC RSP00070 Mean Expected Number 0.004 -strand -47 : -54 TACGTGTC
AC RSP00248 Mean Expected Number 0.004 +strand -147 : -138 GCCAtGTCAG
AC RSP00913 Mean Expected Number 0.005 -strand -137 : -146 GCTGACATGG
AC RSP01288 Mean Expected Number 0.006 -strand -46 : -53 ATACGTGT
Totally 5 motifs of 5 different REs have been found
Description of REs found
67. Group RE: UV LRE /AC: RSP00068//OS: Arabidopsis thaliana /GENE: CHS/RE: UV LRE /TF: unknown
69. Group TF: TRAB1 /AC: RSP00070//OS: Oryza sativa /GENE: Osem/RE: ABRE motif A /TF: TRAB1
241. Group TF: REB /AC: RSP00248//OS: Oryza sativa /GENE: alpha-globulin/RE: REB2 /TF: REB
844. Group TF: Opaque-2 /AC: RSP00913//OS: Zea mays /GENE: b-32/RE: B1 /TF: Opaque-2
1185. Group RE: Z-DNA-motif /AC: RSP01288//OS: Arabidopsis thaliana /GENE: cab1/RE: Z-DNA-motif /TF: unknown
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