> PLPR0083 ..AC:M62755 ..OS:Solanum tuberosum ..GENE:St4C1-1 ..PROD:4-coumarate--CoA ligase ..[ -200: +51] ..CDS:+81 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.09 T - 0.32 C - 0.26
1 cctaaccata agaactactc tcaccaacca caagagactc catttttttt
51 atatccccca aaaaggaaaa aaaaattgaa acaagtttcc atgaagttgc
101 ccctgaacaa ccctaaatac ccataaactc cctttcacct accacagact
151 tgtgtatttt ttctcaTATA TATAttcatt aatctttgca cattcatctt
201 CAGGACACCA TAGCTAAAAA TCTACTTTTC CTTTTAGCTT TTCAGTGTGC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00286 Mean Expected Number 0.008 +strand -182 : -172 TCTCACCaACC
AC RSP00286 Mean Expected Number 0.008 +strand -68 : -58 TtTCACCTACC
AC RSP00331 Mean Expected Number 0.004 +strand -116 : -108 GTTTCCATG
AC RSP00888 Mean Expected Number 0.008 +strand +16 : +24 AAAAATCTA
AC RSP00950 Mean Expected Number 0.007 +strand -181 : -171 CTCACCAACCa
AC RSP01033 Mean Expected Number 0.003 -strand -135 : -144 CCTTTTTGGG
AC RSP01044 Mean Expected Number 0.001 +strand -182 : -171 TCTCACCAACCa
AC RSP01083 Mean Expected Number 0.002 +strand -182 : -171 TCTCACCAACCa
AC RSP01184 Mean Expected Number 0.005 +strand -182 : -171 TCTCACCaACCA
AC RSP01184 Mean Expected Number 0.005 +strand -68 : -57 TtTCACCTACCA
AC RSP01214 Mean Expected Number 0.002 -strand -135 : -144 CCTTTTTGGG
AC RSP01294 Mean Expected Number 0.000 +strand -115 : -104 TTTCCATGaAGT
AC RSP01390 Mean Expected Number 0.000 +strand -104 : -56 TTGCCCCTGAACAACCCTAAATACCCATAAACTCCCTTTCACCTACCAC
Totally 13 motifs of 11 different REs have been found
Description of REs found
277. Group RE: Box L /AC: RSP00286//OS: Petroselinum crispum /GENE: PAL-1/RE: Box L /TF: unknown ||Identical REs AC: RSP01754
317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
820. Group TF: CCA1 /AC: RSP00888//OS: Arabidopsis thaliana /GENE: AtAOX1a/RE: CCA1 motif (2) /TF: CCA1
879. Group RE: CTCACCAACCC motif /AC: RSP00950//OS: Petroselinum crispum /GENE: 4CL-1/RE: CTCACCAACCC motif /TF: unknown
958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC: RSP01204
968. Group RE: box L /AC: RSP01044//OS: Petroselinum crispum /GENE: CCoAOMT/RE: box L /TF: unknown
1001. Group TF: DcMYB1 /AC: RSP01083//OS: Daucus carota /GENE: DcPAL1/RE: box-L5 /TF: DcMYB1
1096. Group RE: box 1 /AC: RSP01184//OS: Various plants /GENE: chsA/RE: box 1 /TF: unknown
1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs
1191. Group RE: Box 5 /AC: RSP01294//OS: Avena fatua /GENE: Amy2/D/RE: Box 5 /TF: unknown ||Identical REs AC: RSP01299 RSP01300
1274. Group RE: 4cl-CMA1 /AC: RSP01390//OS: Solanum tuberosum /GENE: 4CL-1/RE: 4cl-CMA1 /TF: unknown
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