> PLPR0084 ..AC:X57082 ..OS:Pisum sativum ..GENE:Cab II ..PROD:chlorophyll a/..[ -200: +51] ..CDS:+74 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.36 G - 0.13 T - 0.25 C - 0.26
1 aacatctaag ccaccagatg actgcatcca catggcacaa agagagccac
51 aatatgaata caatatatca ccttggaaat ccatgtagaa attcacaacc
101 aataagatgt tgctgacttg tgcatatcct aatccACAAT atctaatatt
151 tccacactgg ccactccctg cacttctata aacctttgta gcatatcttc
201 ACTCTTCACA ACAACATTTG CTAGTAGCAT CGAAGAGAAC AACATCAAAG
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00280 Mean Expected Number 0.007 +strand -121 : -112 TCCAtGTAGA
AC RSP00313 Mean Expected Number 0.002 +strand -172 : -162 CACATGGCACa
AC RSP00683 Mean Expected Number 0.004 -strand -165 : -174 GCCAtGTGGA
Totally 3 motifs of 3 different REs have been found
Description of REs found
271. Group TF: Opaque-1 /AC: RSP00280//OS: Zea mays /GENE: alpha-22kDa zein/RE: O2-box /TF: Opaque-1
299. Group RE: G-box /Group TF: GBF (CG-1) /AC: RSP00313//OS: Pisum sativum /GENE: rbcS-3A/RE: G-box /TF: GBF (CG-1)
652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
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