> PLPR0085 ..AC:AJ222771 ..OS:Pisum sativum ..GENE:gdcT ..PROD:T protein ..[ -200:  +51] ..TSS:201 (+1) # Alternative TSS(s):  +32 |Taxon: Dicot |Promoter: TATA-less
  Nucleotide Frequencies:  A -  0.26   G -  0.13   T -  0.42   C -  0.19

      1  ggtaatgttg ctaccactca ctaaggatgg ggtatcatag gctctcttca
     51  tttggggcac tcactcaatc aagatgaggt taagttgttc tcaatctcac
    101  atccaccaac tccctctttt tatatttttt atttaaatta aataaatata
    151  ttaatatatt atttttattt attttattca tttatgtcca acaaattcat
    201  TTGATAAACG AGGTTCTCTC TTCTCGTTTC TTGTCTCTCG CAGTGTTTCA
    251  T

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00078   Mean Expected Number 0.000   +strand    -98 :  -87   CCACCAACtCCC
AC RSP00140   Mean Expected Number 0.005   +strand    -44 :  -32   tATTATTTTTATT
AC RSP00230   Mean Expected Number 0.005   -strand   -115 : -124   AACtTAACCT
AC RSP00358   Mean Expected Number 0.002   +strand    -94 :  -87   CAACTCCC
AC RSP01014   Mean Expected Number 0.002   -strand   -147 : -156   CAAATGAAGA
AC RSP01228   Mean Expected Number 0.000   +strand   -100 :  -87   ATcCACCAACTCCC
AC RSP01463   Mean Expected Number 0.002   -strand    -46 :  -58   ATTaATATATTTA
AC RSP01602   Mean Expected Number 0.009   +strand   -112 : -105   TCTCAATC
AC RSP01641   Mean Expected Number 0.001   +strand    +29 :  +38   TCTTGTCTCT

  Totally       9 motifs of     9 different REs have been found


Description of REs found

   77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown
  136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1
  223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1
  343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown
  939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF
 1133. Group RE: P-box 3 /AC: RSP01228//OS: Arabidopsis thaliana /GENE: C4H/RE: P-box 3 /TF: unknown
 1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown
 1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
 1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown

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