> PLPR0085 ..AC:AJ222771 ..OS:Pisum sativum ..GENE:gdcT ..PROD:T protein ..[ -200: +51] ..TSS:201 (+1) # Alternative TSS(s): +32 |Taxon: Dicot |Promoter: TATA-less
Nucleotide Frequencies: A - 0.26 G - 0.13 T - 0.42 C - 0.19
1 ggtaatgttg ctaccactca ctaaggatgg ggtatcatag gctctcttca
51 tttggggcac tcactcaatc aagatgaggt taagttgttc tcaatctcac
101 atccaccaac tccctctttt tatatttttt atttaaatta aataaatata
151 ttaatatatt atttttattt attttattca tttatgtcca acaaattcat
201 TTGATAAACG AGGTTCTCTC TTCTCGTTTC TTGTCTCTCG CAGTGTTTCA
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00078 Mean Expected Number 0.000 +strand -98 : -87 CCACCAACtCCC
AC RSP00140 Mean Expected Number 0.005 +strand -44 : -32 tATTATTTTTATT
AC RSP00230 Mean Expected Number 0.005 -strand -115 : -124 AACtTAACCT
AC RSP00358 Mean Expected Number 0.002 +strand -94 : -87 CAACTCCC
AC RSP01014 Mean Expected Number 0.002 -strand -147 : -156 CAAATGAAGA
AC RSP01228 Mean Expected Number 0.000 +strand -100 : -87 ATcCACCAACTCCC
AC RSP01463 Mean Expected Number 0.002 -strand -46 : -58 ATTaATATATTTA
AC RSP01602 Mean Expected Number 0.009 +strand -112 : -105 TCTCAATC
AC RSP01641 Mean Expected Number 0.001 +strand +29 : +38 TCTTGTCTCT
Totally 9 motifs of 9 different REs have been found
Description of REs found
77. Group RE: AC-II /AC: RSP00078//OS: Phaseolus vulgaris /GENE: PAL2/RE: AC-II /TF: unknown
136. Group RE: AT-1 (2) /Group TF: AT-1 /AC: RSP00140//OS: Pisum sativum /GENE: rbcS-3.6/RE: AT-1 (2) /TF: AT-1
223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1
343. Group RE: CARE2 /AC: RSP00358//OS: Oryza sativa /GENE: Rep-1/RE: CARE2 /TF: unknown
939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF
1133. Group RE: P-box 3 /AC: RSP01228//OS: Arabidopsis thaliana /GENE: C4H/RE: P-box 3 /TF: unknown
1333. Group RE: AT-rich ELS /AC: RSP01463//OS: Glycine max /GENE: BiP6/RE: AT-rich ELS /TF: unknown
1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
1461. Group RE: ARE /AC: RSP01641//OS: Nicotiana tabacum /GENE: P-450/RE: ARE /TF: unknown
Download This Page
Download Promoter Sequence in FASTA Format