> PLPR0087 ..AC:U28924 ..OS:Pisum sativum ..GENE:GS3B ..PROD:cytosolic glutamine synthetase ..[ -200: +51] ..CDS:+90 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.39 G - 0.07 T - 0.37 C - 0.18
1 aagtgataat ctattttatt tcatttctat ctttaagaaa ttaaaaaata
51 accattttat tccaattttc aaaattcaat tgatctagta gataaaaaga
101 ttctccgaag acaaccacta aaaagttaat aACAATttaa tagtaatttt
151 ttctacatat cattctatTA TAAATAggtt catatctcac actttctttt
201 AACCCTTACA AAAAGCCAGA GATTCCTCTG TAGCTATCTT TCAACAAAAC
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00536 Mean Expected Number 0.010 +strand -198 : -192 GTGATAA
AC RSP00756 Mean Expected Number 0.005 +strand -15 : -8 CTCACACT
AC RSP01031 Mean Expected Number 0.009 -strand -97 : -104 AGAATCTT
AC RSP01182 Mean Expected Number 0.000 +strand -121 : -105 TTGATCTAGTAGATAAA
AC RSP01250 Mean Expected Number 0.007 +strand -130 : -121 AAAATTCAAT
Totally 5 motifs of 5 different REs have been found
Description of REs found
512. Group RE: LRE-TATA AA2 /AC: RSP00536//OS: Lycopersicon esculentum /GENE: rbcS3C/RE: LRE-TATA AA2 /TF: unknown
718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown
956. Group TF: AEF /AC: RSP01031//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 2 /TF: AEF
1094. Group TF: GS3A-F1 /AC: RSP01182//OS: Pisum sativum /GENE: GS3A/RE: GS3A-F1 BS /TF: GS3A-F1
1154. Group TF: CBF-C /AC: RSP01250//OS: Arabidopsis thaliana /GENE: AtpC/RE: CBF-C BS /TF: CBF-C
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