> PLPR0090 ..AC:D21159 ..OS:Oryza sativa ..GENE:Osg4B ..PROD:rice anther specific protein ..[ -200: +51] ..CDS:+80 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.25 G - 0.26 T - 0.14 C - 0.35
1 ctccgacccc ggccgagacg cacggcgggg aagaggctta cagtccaaag
51 agcgtgacgc atgttcggta ccacgcgcac aaaactgccg tgctcggctt
101 ctccatcgat caccggcata ggtgagccat gcaaagctcg ccgggcgccc
151 ccaagctccg gccacccccT ATAAAACccg ccgctcctca ccgtcaccgg
201 CAAGCACAGC AAAGCAGCAG CAGCAAAGGT AAGGTAATAT TTGCAGCATC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00164 Mean Expected Number 0.009 +strand +35 : +40 TAATAT
AC RSP00206 Mean Expected Number 0.000 +strand +29 : +40 GTaAGGTAATAT
AC RSP00447 Mean Expected Number 0.008 +strand +8 : +17 AGCAAAGCAg
AC RSP00871 Mean Expected Number 0.002 +strand -80 : -71 GGTGAGcCAT
Totally 4 motifs of 4 different REs have been found
Description of REs found
159. Group RE: TATA3 /AC: RSP00164//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: TATA3 /TF: unknown ||Identical REs AC: RSP01047
199. Group TF: GT-1 /AC: RSP00206//OS: Pisum sativum /GENE: rbcS-3A/RE: BOX II* /TF: GT-1
427. Group TF: Dof1 /AC: RSP00447//OS: Zea mays /GENE: pepcZm2A/RE: box b /TF: Dof1
807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown
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