> PLPR0091 ..AC:S45406 ..OS:Nicotiana tabacum ..GENE:TobRB7 ..PROD:root-specific gene regulator ..[ -200: +51] ..CDS:+77 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.33 G - 0.18 T - 0.31 C - 0.18
1 tcaaaaaaag ccaaagggcg gtgggacggc gccaatcatt tgtcctagtc
51 cactcaaata aggcccatgg tcggcaaaac caaacacaaa atgtgttatt
101 tttaattttt tcctcttttA TTGTtaaagt tgcaaaatgt gttatttttg
151 gtaagaccct atggaTATAT AAAgacaggt tatgtgaaac ttggaaaacc
201 ATCAAGTTTT AAGCAAAACC CTCTTAAGAA CTTAAATTGA GCTTCTTTTG
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00716 Mean Expected Number 0.002 +strand -126 : -118 CAAAACCAA
AC RSP00933 Mean Expected Number 0.002 +strand -102 : -90 TTTtTAATTTTTT
AC RSP01032 Mean Expected Number 0.007 -strand +51 : +42 CCAAAAGAAG
AC RSP01209 Mean Expected Number 0.006 +strand +42 : +51 CTTcTTTTGG
AC RSP01776 Mean Expected Number 0.007 -strand -77 : -87 ACAATaAAAGA
Totally 5 motifs of 5 different REs have been found
Description of REs found
681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown
862. Group RE: AT-2a /AC: RSP00933//OS: Pinus sylvestris /GENE: GS1a/RE: AT-2a /TF: unknown
957. Group TF: FLC /AC: RSP01032//OS: Arabidopsis thaliana /GENE: SOC1/RE: CArG box /TF: FLC
1119. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01209//OS: Lepidium africanum /GENE: LaCRC/RE: EM1 /TF: MADS box TFs
1575. Group TF: SIP1 /AC: RSP01776//OS: Lotus japonicus /GENE: AT-rich motif/RE: 39-bp element /TF: SIP1
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