> PLPR0098 ..AC:J05209 ..OS:Glycine max ..GENE:SbPRP3 ..PROD:cell wall protein ..[ -200: +51] ..CDS:+33 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.34 G - 0.14 T - 0.27 C - 0.25
1 ttattaatta ctatacagat tgcgtctagg ttcttcattt acaataccat
51 gggacctagg agtctcaatc ccttttgaat aatccacacc aaactttggc
101 tataatACAA Tgacaaagca agtcattaat gacctagatt gagacctagc
151 acctacaccg agcccttact agTATAAAAA ccgaacacta agtgtgagtt
201 ATGCACACCA ACACCAAAAC AAACCCACTA AGATGGCTTC CTTTGTATCC
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00635 Mean Expected Number 0.001 -strand -145 : -152 GGTCCCAT
AC RSP00756 Mean Expected Number 0.001 -strand -3 : -10 CTCACACT
AC RSP01014 Mean Expected Number 0.006 -strand -160 : -169 tAAATGAAGA
AC RSP01602 Mean Expected Number 0.009 +strand -138 : -131 TCTCAATC
AC RSP01602 Mean Expected Number 0.002 -strand -57 : -64 TCTCAATC
Totally 5 motifs of 4 different REs have been found
Description of REs found
611. Group RE: NDE Box 3 /AC: RSP00635//OS: Glycine max /GENE: SAUR 15A/RE: NDE Box 3 /TF: unknown
718. Group RE: submotif B /AC: RSP00756//OS: Solanum tuberosum /GENE: S2-RNase/RE: submotif B /TF: unknown
939. Group TF: GAPF /AC: RSP01014//OS: Arabidopsis thaliana /GENE: GapA/RE: Gap box 2 /TF: GAPF
1423. Group RE: Inr /AC: RSP01602//OS: Spinacia oleracea /GENE: PsaDb/RE: Inr /TF: unknown
Download This Page
Download Promoter Sequence in FASTA Format