> PLPR0099 ..AC:U42336 ..OS:Triticum aestivum ..GENE:TA-ACS2 ..PROD:ACC synthase ..[ -200: +51] ..CDS:+207 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.18 G - 0.20 T - 0.22 C - 0.39
1 gcgtcttcgg ctccacccgc cctcgctttc acggaagttt attccccgcc
51 atgcgcgcat atgccaaagc gctgtccctt ttttctctct ctcgcgaggc
101 agagtgctgt cccttgacct gcgtctctac cgcgccatgg gcagcgccag
151 cgccagcgcc acgaatcTAT AAATAggcac caacgagcag cttacccatt
201 CATCTCCCTC CCTCCCTCGC CAGCTCAAGC TCAAGAAGCT CCACCAATCT
251 C
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00163 Mean Expected Number 0.005 +strand -124 : -114 CCTTTTtTCTC
AC RSP00445 Mean Expected Number 0.005 -strand -117 : -126 AAAAAAGgGA
AC RSP00695 Mean Expected Number 0.003 +strand -33 : -27 TATAAAT
AC RSP00864 Mean Expected Number 0.003 -strand -109 : -117 AGAGAGAGA
AC RSP01296 Mean Expected Number 0.000 +strand -34 : -26 CTATAAATA
AC RSP01301 Mean Expected Number 0.003 +strand -34 : -25 CTATAAATAg
AC RSP01708 Mean Expected Number 0.001 +strand -34 : -25 CTATAAATAG
AC RSP01708 Mean Expected Number 0.001 -strand -25 : -34 CTATTTATAG
Totally 8 motifs of 7 different REs have been found
Description of REs found
158. Group TF: ARF1 /AC: RSP00163//OS: Glycine max /GENE: Synthetic OLIGO/RE: DR5 /TF: ARF1
425. Group TF: Dof1 /AC: RSP00445//OS: Zea mays /GENE: cyPPDK1/RE: box e /TF: Dof1
661. Group RE: TATA box /AC: RSP00695//OS: Oryza sativa /GENE: Gt1/RE: TATA box /TF: unknown
800. Group TF: BPC1 /AC: RSP00864//OS: Arabidopsis thaliana /GENE: STK/RE: GA-5 /TF: BPC1
1192. Group RE: TATA box /Group TF: TBF /AC: RSP01296//OS: Avena fatua /GENE: Amy2/D/RE: TATA box /TF: TBF
1195. Group RE: TATA box /Group TF: TBF /AC: RSP01301//OS: Triticum aestivum /GENE: Amy2/54/RE: TATA box /TF: TBF ||Identical REs AC: RSP01302
1516. Group TF: RIN /AC: RSP01708//OS: Solanum lycopersicum /GENE: Synthetic OLIGO/RE: RIN BSC [MEF2] /TF: RIN
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