> PLPR0100 ..AC:L38908 ..OS:Nicotiana tabacum ..GENE:extensin ..PROD:extensin ..[ -200: +51] ..CDS:+31 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.36 G - 0.19 T - 0.29 C - 0.16
1 atcgaacaaa aagagtatac caactcaagt caatttgagc cgacaacatg
51 acaaaaccaa atcaaaatgc atactctagc ttttttactt tggtaggttt
101 taagtaatct agtgagactt ttaccttcat tcatgaaaat cttggaaagg
151 gtaattgtat aattgaaagc TATATAAAgg ggtcggagtg aagcttaaga
201 GGACAACAAC TTTTCTCATT TGTTTCAAAG ATGGGGAAAA TGGCCTCTCT
251 A
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00489 Mean Expected Number 0.009 -strand -102 : -111 aACCTACCAA
AC RSP00716 Mean Expected Number 0.002 +strand -149 : -141 CAAAACCAA
AC RSP01453 Mean Expected Number 0.009 -strand -103 : -109 ACCTACC
AC RSP01499 Mean Expected Number 0.005 -strand +38 : +29 TTCCCCaTCT
AC RSP01600 Mean Expected Number 0.009 +strand +23 : +30 TTTCAAAG
Totally 5 motifs of 5 different REs have been found
Description of REs found
465. Group RE: UVLRE2 /AC: RSP00489//OS: Glycine max /GENE: chs1/RE: UVLRE2 /TF: unknown
681. Group RE: GT motif /AC: RSP00716//OS: Arabidopsis thaliana /GENE: Adh/RE: GT motif /TF: unknown
1324. Group RE: AC-I /Group TF: PtMYB4 /AC: RSP01453//OS: Pinus taeda /GENE: Synthetic OLIGO/RE: AC-I /TF: PtMYB4
1360. Group RE: CS6 /AC: RSP01499//OS: Triticum aestivum /GENE: H1 (TH315)/RE: CS6 /TF: unknown ||Identical REs AC: RSP01500
1421. Group RE: Inr /AC: RSP01600//OS: Spinacia oleracea /GENE: RPS22/RE: Inr /TF: unknown
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