> PLPR0101 ..AC:M63634 M38281 ..OS:Nicotiana plumbaginifolia ..GENE:beta-1,3-glucanase regulator ..PROD:beta-1,3-glucanase regulator ..[ -200: +51] ..CDS:+30 ..TSS:201 (+1) # Alternative TSS(s): +7 |Taxon: Dicot |Promoter: TATA
Nucleotide Frequencies: A - 0.37 G - 0.12 T - 0.36 C - 0.14
1 cgaaaaattg cacatttctt atcatcgtaa atgtgtcatc taatgattag
51 cttaaaatta atgatctttg aaaaatgaga acgagaaaaa tatattattt
101 ttaaatgaaa ttctttgcgt cTCAATttaa ttcaccactt gaatattttt
151 ataaaggctt aaggctatct cTATATAAAt gagatgttac gtgaaagctt
201 CATCTTAATT AGTTTCTAAC AAAAGCCATG GATACCTCAC ATAAACATAT
251 T
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00117 Mean Expected Number 0.006 +strand -108 : -96 tATTATTTTTAAA
AC RSP00135 Mean Expected Number 0.007 +strand -59 : -48 AATATTTTTATa
AC RSP00331 Mean Expected Number 0.004 -strand +35 : +27 GTATCCATG
AC RSP00404 Mean Expected Number 0.009 +strand -87 : -81 TTTGCGT
AC RSP00522 Mean Expected Number 0.004 +strand -66 : -60 CCACTTG
Totally 5 motifs of 5 different REs have been found
Description of REs found
115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown
131. Group RE: AT-1 (4) /AC: RSP00135//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (4) /TF: unknown
317. Group TF: S1F /AC: RSP00331//OS: Spinacia oleracea; Pisum sativum; Arabidopsis thaliana; /GENE: prs 1 and RPL21 (spinach), rbcS-3a (pea, tomato, Arabidopsis),/RE: S1, consensus /TF: S1F
386. Group RE: adja /AC: RSP00404//OS: Nicotiana tabacum /GENE: RNP2/RE: adja /TF: unknown
498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
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