> PLPR0104 ..AC:M76552 ..OS:Lycopersicon esculentum ..GENE:le25 ..PROD:le25 ..[ -200:  +51] ..CDS:+81 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.39   G -  0.14   T -  0.28   C -  0.19

      1  catggactat cttgttgata caaatccaaa aaaggaatta acatgtctat
     51  ctattcaatt actgaaaaac aaaacgtgtc atgacctcaa agtttctaca
    101  tctcatgact caccacgcgt acgtttataa atatttacgt ggcatcacta
    151  ggttacccat ccaactccTA TATAAAgtaa ttttcgtaat ttttcgtaat
    201  AAAACGAAAT TACGAAAGAC TCTAGAAAGA AGAAGAGAAG AAAACGAATT
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00006   Mean Expected Number 0.002   -strand    -18 :  -31   AAATTAcTTTATAT
AC RSP00043   Mean Expected Number 0.001   +strand    -65 :  -58   TACGTGGC
AC RSP00051   Mean Expected Number 0.001   -strand    -58 :  -67   GCCACGTAaA
AC RSP00247   Mean Expected Number 0.001   -strand    -58 :  -67   GCCACGTAAa
AC RSP00430   Mean Expected Number 0.001   -strand    -88 :  -96   GTGAGTCAT
AC RSP00871   Mean Expected Number 0.007   -strand    -87 :  -96   GGTGAGTCAT
AC RSP01030   Mean Expected Number 0.006   -strand   -104 : -111   AGAAACTT
AC RSP01033   Mean Expected Number 0.009   -strand   -166 : -175   CCTTTTTTGG
AC RSP01034   Mean Expected Number 0.002   +strand    -64 :  -58   ACGTGGC
AC RSP01035   Mean Expected Number 0.005   +strand   -127 : -121   ACGTGTC
AC RSP01214   Mean Expected Number 0.004   -strand   -166 : -175   CCTTTTTTGG

  Totally      11 motifs of    11 different REs have been found


Description of REs found

    6. Group RE: ATRE /AC: RSP00006//OS: Glycine max /GENE: GS15/RE: ATRE /TF: unknown
   42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
   50. Group RE: A3 /AC: RSP00051//OS: Hordeum vulgare /GENE: HVA22/RE: A3 /TF: unknown
  240. Group TF: REB /AC: RSP00247//OS: Oryza sativa /GENE: alpha-globulin/RE: REB1 /TF: REB ||Identical REs AC:  RSP00738
  410. Group TF: BLZ1 /AC: RSP00430//OS: Hordeum vulgare /GENE: Hor2 gene/RE: GSN; hor1-box; /TF: BLZ1 ||Identical REs AC:  RSP00883
  807. Group RE: GLM1 /AC: RSP00871//OS: Triticum aestivum /GENE: LMWG-1D1/RE: GLM1 /TF: unknown
  955. Group TF: AEF /AC: RSP01030//OS: Arabidopsis thaliana /GENE: GapB/RE: AE box 1 /TF: AEF
  958. Group TF: FLC /AC: RSP01033//OS: Arabidopsis thaliana /GENE: FT/RE: CArG box /TF: FLC ||Identical REs AC:  RSP01204
  959. Group TF: ABI3; ABI5; AREB1 /AC: RSP01034//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 1/2 /TF: ABI3; ABI5; AREB1
  960. Group TF: ABI3; ABI5; AREB1 /AC: RSP01035//OS: Arabidopsis thaliana /GENE: RD29B/RE: ABRE 3 /TF: ABI3; ABI5; AREB1
 1122. Group RE: EM1 /Group TF: MADS box TFs /AC: RSP01214//OS: Brassica oleracea /GENE: BoCRC/RE: EM1 /TF: MADS box TFs