> PLPR0106 ..AC:X56240 ..OS:Vicia faba ..GENE:USP ..PROD:unknown seed protein ..[ -200:  +51] ..CDS:+52 ..TSS:201 (+1) |Taxon: Dicot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.35   G -  0.17   T -  0.31   C -  0.18

      1  taccacacac aagttttgag gtgcatgcat ggatgcccct gtggaaagtt
     51  taaaaatatt ttggaaatga tttgcatgga agccatgtgt aaaaccatga
    101  catccacttg gaggatGCAA Taatgaagaa aactacaaat ttacatgcaa
    151  ctagttatgc atgtagtcTA TATAATgagg attttgcaat actttcattc
    201  ATACACACTC ACTAAGTTTT ACACGATTAT AATTTCTTCA TAGCCAGTCA
    251  A

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00016   Mean Expected Number 0.007   -strand   -174 : -180   CATGCAC
AC RSP00108   Mean Expected Number 0.002   +strand   -177 : -170   CATGCATG
AC RSP00108   Mean Expected Number 0.002   -strand   -170 : -177   CATGCATG
AC RSP00117   Mean Expected Number 0.002   -strand   -140 : -152   AAaTATTTTTAAA
AC RSP00349   Mean Expected Number 0.001   -strand   -168 : -176   TCCATGCAT
AC RSP00350   Mean Expected Number 0.001   -strand   -166 : -176   CaTCCATGCAT
AC RSP00522   Mean Expected Number 0.007   +strand    -97 :  -91   CCACTTG
AC RSP00683   Mean Expected Number 0.003   -strand    -89 :  -98   tCCAAGTGGA
AC RSP01074   Mean Expected Number 0.001   +strand   -178 : -169   GCATGCATGg
AC RSP01074   Mean Expected Number 0.001   -strand   -169 : -178   CCATGCATGC
AC RSP01470   Mean Expected Number 0.008   +strand    -46 :  -37   TtATGCATGT

  Totally      11 motifs of     9 different REs have been found


Description of REs found

   15. Group RE: RY /AC: RSP00016//OS: Glycine max /GENE: beta-conglycinin/RE: RY /TF: unknown
  106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC:  RSP01169  RSP01452
  115. Group RE: AT-1 (2) /AC: RSP00117//OS: Nicotiana plumbaginifolia /GENE: cab-E/RE: AT-1 (2) /TF: unknown
  334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays,  Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1)
  335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown
  498. Group TF: DPBF-1; DPBF-2 /AC: RSP00522//OS: Daucus carota /GENE: Dc3/RE: E2-core /TF: DPBF-1; DPBF-2
  652. Group TF: GBF3 /AC: RSP00683//OS: Arabidopsis thaliana /GENE: Adh/RE: -190 half G-box (core) /TF: GBF3
  992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
 1340. Group TF: Opaque-2 (O2) /AC: RSP01470//OS: Zea mays /GENE: alpha-22kDa zein/RE: Z2 /TF: Opaque-2 (O2)