> PLPR0107 ..AC:X52201 ..OS:Zea mays ..GENE:C1-I ..PROD:C1-I ..[ -200:  +51] ..CDS:+18 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
  Nucleotide Frequencies:  A -  0.21   G -  0.32   T -  0.19   C -  0.28

      1  ttttttaact gcatacgttg cccttgctca gcaccagcac agcagtgtcg
     51  tgtcgtccat gcatgcactt taggttaggt gcagggcctc aactcggcca
    101  cgtagttagc gccactgcta cagatcgagg caccggtcag ccggccacgc
    151  acgtcgaccg cgcgcgtgca TTTAAATAcg ccgacgacgg agcttgatcg
    201  ACGAGAGAGC GAGCGCGATG GGGAGGAGGG CGTGTTGCGC GAAGGAAGGC
    251  G

  RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):

AC RSP00043   Mean Expected Number 0.005   -strand    -97 : -104   TACGTGGC
AC RSP00064   Mean Expected Number 0.008   -strand    -95 : -104   AcTACGTGGC
AC RSP00108   Mean Expected Number 0.003   +strand   -143 : -136   CATGCATG
AC RSP00108   Mean Expected Number 0.003   -strand   -136 : -143   CATGCATG
AC RSP00150   Mean Expected Number 0.000   +strand   -152 : -137   CGTGTCGTCCATGCAT
AC RSP00179   Mean Expected Number 0.003   +strand    -30 :  -24   TTTAAAT
AC RSP00179   Mean Expected Number 0.003   -strand    -25 :  -31   TTTAAAT
AC RSP00186   Mean Expected Number 0.001   -strand    -96 : -106   CTACGTGGCCG
AC RSP00230   Mean Expected Number 0.005   -strand   -120 : -129   cACCTAACCT
AC RSP00349   Mean Expected Number 0.001   +strand   -145 : -137   TCCATGCAT
AC RSP00350   Mean Expected Number 0.002   +strand   -147 : -137   CGTCCATGCAT
AC RSP00488   Mean Expected Number 0.010   -strand    -96 : -105   CTACGTgGCC
AC RSP00516   Mean Expected Number 0.000   +strand   -116 :  -95   GGCCTCAACTCGGCCACGTAGT
AC RSP00634   Mean Expected Number 0.000   +strand   -152 : -130   CGTGTCGTCCATGCATGCACTTT
AC RSP00642   Mean Expected Number 0.001   -strand    -27 :  -34   TAAATGCA
AC RSP00655   Mean Expected Number 0.003   -strand    -23 :  -29   TATTTAA
AC RSP00880   Mean Expected Number 0.009   -strand   -175 : -184   CAAgGGCAAC
AC RSP01074   Mean Expected Number 0.002   +strand   -144 : -135   cCATGCATGC
AC RSP01074   Mean Expected Number 0.002   -strand   -135 : -144   GCATGCATGg
AC RSP01259   Mean Expected Number 0.005   -strand    -96 : -103   CTACGTGG

  Totally      20 motifs of    17 different REs have been found


Description of REs found

   42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
   63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown
  106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC:  RSP01169  RSP01452
  146. Group RE: ABRE /AC: RSP00150//OS: Zea mays /GENE: C1/RE: ABRE /TF: unknown
  173. Group RE: AT-rich motif /AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: AT-rich motif /TF: unknown
  180. Group RE: G-box motif /AC: RSP00186//OS: Oryza sativa /GENE: Amy3D/RE: G-box motif /TF: unknown
  223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1
  334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays,  Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1)
  335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown
  464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown
  492. Group RE: LRE /AC: RSP00516//OS: Zea mays /GENE: C1/RE: LRE /TF: unknown
  610. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00634//OS: Zea mays,  Zea mays /GENE: C1/RE: Sph /TF: VP1 (VIVAPAROUS1)
  617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
  629. Group RE: TATA box /AC: RSP00655//OS: Oryza sativa /GENE: PAL/RE: TATA box /TF: unknown
  816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family
  992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
 1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1

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