> PLPR0107 ..AC:X52201 ..OS:Zea mays ..GENE:C1-I ..PROD:C1-I ..[ -200: +51] ..CDS:+18 ..TSS:201 (+1) |Taxon: Monocot |Promoter: TATA
Nucleotide Frequencies: A - 0.21 G - 0.32 T - 0.19 C - 0.28
1 ttttttaact gcatacgttg cccttgctca gcaccagcac agcagtgtcg
51 tgtcgtccat gcatgcactt taggttaggt gcagggcctc aactcggcca
101 cgtagttagc gccactgcta cagatcgagg caccggtcag ccggccacgc
151 acgtcgaccg cgcgcgtgca TTTAAATAcg ccgacgacgg agcttgatcg
201 ACGAGAGAGC GAGCGCGATG GGGAGGAGGG CGTGTTGCGC GAAGGAAGGC
251 G
RE motifs found (positions are given in relation to TSS at 201; Mismatches - in lower case):
AC RSP00043 Mean Expected Number 0.005 -strand -97 : -104 TACGTGGC
AC RSP00064 Mean Expected Number 0.008 -strand -95 : -104 AcTACGTGGC
AC RSP00108 Mean Expected Number 0.003 +strand -143 : -136 CATGCATG
AC RSP00108 Mean Expected Number 0.003 -strand -136 : -143 CATGCATG
AC RSP00150 Mean Expected Number 0.000 +strand -152 : -137 CGTGTCGTCCATGCAT
AC RSP00179 Mean Expected Number 0.003 +strand -30 : -24 TTTAAAT
AC RSP00179 Mean Expected Number 0.003 -strand -25 : -31 TTTAAAT
AC RSP00186 Mean Expected Number 0.001 -strand -96 : -106 CTACGTGGCCG
AC RSP00230 Mean Expected Number 0.005 -strand -120 : -129 cACCTAACCT
AC RSP00349 Mean Expected Number 0.001 +strand -145 : -137 TCCATGCAT
AC RSP00350 Mean Expected Number 0.002 +strand -147 : -137 CGTCCATGCAT
AC RSP00488 Mean Expected Number 0.010 -strand -96 : -105 CTACGTgGCC
AC RSP00516 Mean Expected Number 0.000 +strand -116 : -95 GGCCTCAACTCGGCCACGTAGT
AC RSP00634 Mean Expected Number 0.000 +strand -152 : -130 CGTGTCGTCCATGCATGCACTTT
AC RSP00642 Mean Expected Number 0.001 -strand -27 : -34 TAAATGCA
AC RSP00655 Mean Expected Number 0.003 -strand -23 : -29 TATTTAA
AC RSP00880 Mean Expected Number 0.009 -strand -175 : -184 CAAgGGCAAC
AC RSP01074 Mean Expected Number 0.002 +strand -144 : -135 cCATGCATGC
AC RSP01074 Mean Expected Number 0.002 -strand -135 : -144 GCATGCATGg
AC RSP01259 Mean Expected Number 0.005 -strand -96 : -103 CTACGTGG
Totally 20 motifs of 17 different REs have been found
Description of REs found
42. Group TF: TAF-1 /AC: RSP00043//OS: Oryza sativa /GENE: rab16A-D/RE: Motif I core /TF: TAF-1
63. Group RE: Motif I /AC: RSP00064//OS: Oryza sativa /GENE: rab16B/RE: Motif I /TF: unknown
106. Group RE: RY4 /AC: RSP00108//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: RY4 /TF: unknown ||Identical REs AC: RSP01169 RSP01452
146. Group RE: ABRE /AC: RSP00150//OS: Zea mays /GENE: C1/RE: ABRE /TF: unknown
173. Group RE: AT-rich motif /AC: RSP00179//OS: Phaseolus vulgaris /GENE: beta-phaseolin, or phas/RE: AT-rich motif /TF: unknown
180. Group RE: G-box motif /AC: RSP00186//OS: Oryza sativa /GENE: Amy3D/RE: G-box motif /TF: unknown
223. Group TF: PcMYB1 /AC: RSP00230//OS: Petroselinum crispum /GENE: CHS-1/RE: MRECHS /TF: PcMYB1
334. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00349//OS: Zea mays, Zea mays /GENE: C1/RE: Sph-core /TF: VP1 (VIVAPAROUS1)
335. Group RE: VP1 RE /AC: RSP00350//OS: Zea mays /GENE: C1/RE: VP1 RE /TF: unknown
464. Group RE: UVLRE1 /AC: RSP00488//OS: Glycine max /GENE: chs1/RE: UVLRE1 /TF: unknown
492. Group RE: LRE /AC: RSP00516//OS: Zea mays /GENE: C1/RE: LRE /TF: unknown
610. Group TF: VP1 (VIVAPAROUS1) /AC: RSP00634//OS: Zea mays, Zea mays /GENE: C1/RE: Sph /TF: VP1 (VIVAPAROUS1)
617. Group RE: L1-box /AC: RSP00642//OS: Arabidopsis thaliana /GENE: PDF1/RE: L1-box /TF: unknown
629. Group RE: TATA box /AC: RSP00655//OS: Oryza sativa /GENE: PAL/RE: TATA box /TF: unknown
816. Group TF: Dof family /AC: RSP00880//OS: Hordeum vulgare /GENE: Al21/RE: M1 /TF: Dof family
992. Group TF: PvAlf /AC: RSP01074//OS: Arachis hypogea; Phaseolus vulgaris /GENE: Em/RE: Sph /TF: PvAlf
1161. Group TF: GBF1 /AC: RSP01259//OS: Arabidopsis thaliana /GENE: Synthetic OLIGO/RE: GBF1 BS6 /TF: GBF1
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